BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254781000|ref|YP_003065413.1| tRNA (uracil-5-)-methyltransferase [Candidatus Liberibacter asiaticus str. psy62] (371 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done Results from round 1 >gi|254781000|ref|YP_003065413.1| tRNA (uracil-5-)-methyltransferase [Candidatus Liberibacter asiaticus str. psy62] gi|254040677|gb|ACT57473.1| tRNA (uracil-5-)-methyltransferase [Candidatus Liberibacter asiaticus str. psy62] Length = 371 Score = 773 bits (1996), Expect = 0.0, Method: Compositional matrix adjust. Identities = 371/371 (100%), Positives = 371/371 (100%) Query: 1 MSGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60 MSGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH Sbjct: 1 MSGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60 Query: 61 IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVT 120 IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVT Sbjct: 61 IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVT 120 Query: 121 LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIY 180 LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIY Sbjct: 121 LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIY 180 Query: 181 RQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240 RQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA Sbjct: 181 RQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240 Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP Sbjct: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300 Query: 301 RSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360 RSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV Sbjct: 301 RSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360 Query: 361 LLVRKPSGWHQ 371 LLVRKPSGWHQ Sbjct: 361 LLVRKPSGWHQ 371 >gi|85060132|ref|YP_455834.1| tRNA (uracil-5-)-methyltransferase [Sodalis glossinidius str. 'morsitans'] gi|123518780|sp|Q2NQZ6|TRMA_SODGM RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|84780652|dbj|BAE75429.1| tRNA (uracil-5)-methyltransferase [Sodalis glossinidius str. 'morsitans'] Length = 370 Score = 637 bits (1642), Expect = e-180, Method: Compositional matrix adjust. Identities = 305/365 (83%), Positives = 325/365 (89%) Query: 4 TLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63 TL IDQYEQQLAEK RLRQMMLAFQ P QIFRS+P HYRMRAEF IWHD DDLYHIMF Sbjct: 5 TLPIDQYEQQLAEKAARLRQMMLAFQAPEAQIFRSQPAHYRMRAEFRIWHDEDDLYHIMF 64 Query: 64 DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIY 123 D QTK R+RID+FMPGS LINALM EMM IR EPLLRAKLFQIDYLT+QS +A+VTLIY Sbjct: 65 DPQTKARIRIDHFMPGSPLINALMAEMMTAIRPEPLLRAKLFQIDYLTTQSGEAVVTLIY 124 Query: 124 HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQI 183 HR LDDAWRECA LRDAL AR Y IQ IGRANKTKI LDRDYVDERLTVAGRTLIY+QI Sbjct: 125 HRPLDDAWRECAAGLRDALRARGYHIQFIGRANKTKIYLDRDYVDERLTVAGRTLIYQQI 184 Query: 184 ENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 ENSFTQPNAGINVHMLEW LAAT+G QGDLLELYCGNGNFSL LARHFDRVLA EIAK S Sbjct: 185 ENSFTQPNAGINVHMLEWALAATEGAQGDLLELYCGNGNFSLALARHFDRVLATEIAKLS 244 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 VEAA YNIAANH++NV+IVRMS++EFTQAMR+EREF RLK+ID+ SYR +TIFVDPPRSG Sbjct: 245 VEAAHYNIAANHIDNVQIVRMSAEEFTQAMRKEREFTRLKEIDLQSYRCETIFVDPPRSG 304 Query: 304 LDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363 LD+ATV MVQAYP ILYISCNPDSLCR+LS LSTTHTIERLALFDQFPYT HMECGVLLV Sbjct: 305 LDEATVSMVQAYPQILYISCNPDSLCRNLSTLSTTHTIERLALFDQFPYTHHMECGVLLV 364 Query: 364 RKPSG 368 RK + Sbjct: 365 RKATA 369 >gi|156935907|ref|YP_001439823.1| tRNA (uracil-5-)-methyltransferase [Cronobacter sakazakii ATCC BAA-894] gi|156534161|gb|ABU78987.1| hypothetical protein ESA_03801 [Cronobacter sakazakii ATCC BAA-894] Length = 367 Score = 527 bits (1358), Expect = e-148, Method: Compositional matrix adjust. Identities = 248/361 (68%), Positives = 293/361 (81%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L IDQY+ QLAEK +RL+ MM F P ++FRS HYRMRAEF +WHDGDDLYHI+FD Sbjct: 7 LPIDQYDAQLAEKTERLQSMMAPFAAPAPEVFRSPVSHYRMRAEFRLWHDGDDLYHIIFD 66 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 Q+T+ R+R+D F S LINALM M+A IR LR KLFQIDYLT++S QA+V+L+YH Sbjct: 67 QETRSRIRVDSFPAASELINALMPRMIAGIRDNRTLRHKLFQIDYLTTRSQQAVVSLLYH 126 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 R LDDAWRE A RLRDAL A + + IGRA KTKI LD+DY+DERL VAG +IYRQ+E Sbjct: 127 RALDDAWREEATRLRDALRADGFDVHFIGRATKTKIMLDQDYIDERLPVAGTEMIYRQVE 186 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+HMLEW L T+G +GDLLELYCGNGNFSL LAR+F+RVLA EIAKPSV Sbjct: 187 NSFTQPNAAMNIHMLEWALDVTQGSKGDLLELYCGNGNFSLALARNFNRVLATEIAKPSV 246 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAANH++NV+I+RM+++EFTQAM REFNRL+ ID+ SY+ +TIFVDPPRSGL Sbjct: 247 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 306 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D TV MVQAYPHILYISCNP +LC +L LS TH +ERLALFDQFPYT HMECGVLL R Sbjct: 307 DQETVKMVQAYPHILYISCNPQTLCENLDTLSQTHRVERLALFDQFPYTHHMECGVLLTR 366 Query: 365 K 365 + Sbjct: 367 R 367 >gi|171769880|sp|A7ML95|TRMA_ENTS8 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT Length = 366 Score = 527 bits (1357), Expect = e-147, Method: Compositional matrix adjust. Identities = 248/361 (68%), Positives = 293/361 (81%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L IDQY+ QLAEK +RL+ MM F P ++FRS HYRMRAEF +WHDGDDLYHI+FD Sbjct: 6 LPIDQYDAQLAEKTERLQSMMAPFAAPAPEVFRSPVSHYRMRAEFRLWHDGDDLYHIIFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 Q+T+ R+R+D F S LINALM M+A IR LR KLFQIDYLT++S QA+V+L+YH Sbjct: 66 QETRSRIRVDSFPAASELINALMPRMIAGIRDNRTLRHKLFQIDYLTTRSQQAVVSLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 R LDDAWRE A RLRDAL A + + IGRA KTKI LD+DY+DERL VAG +IYRQ+E Sbjct: 126 RALDDAWREEATRLRDALRADGFDVHFIGRATKTKIMLDQDYIDERLPVAGTEMIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+HMLEW L T+G +GDLLELYCGNGNFSL LAR+F+RVLA EIAKPSV Sbjct: 186 NSFTQPNAAMNIHMLEWALDVTQGSKGDLLELYCGNGNFSLALARNFNRVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAANH++NV+I+RM+++EFTQAM REFNRL+ ID+ SY+ +TIFVDPPRSGL Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D TV MVQAYPHILYISCNP +LC +L LS TH +ERLALFDQFPYT HMECGVLL R Sbjct: 306 DQETVKMVQAYPHILYISCNPQTLCENLDTLSQTHRVERLALFDQFPYTHHMECGVLLTR 365 Query: 365 K 365 + Sbjct: 366 R 366 >gi|238892362|ref|YP_002917096.1| tRNA (uracil-5-)-methyltransferase [Klebsiella pneumoniae NTUH-K2044] gi|330001331|ref|ZP_08303948.1| tRNA (uracil-5-)-methyltransferase [Klebsiella sp. MS 92-3] gi|238544678|dbj|BAH61029.1| tRNA (uracil-5-)-methyltransferase [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|328537722|gb|EGF63927.1| tRNA (uracil-5-)-methyltransferase [Klebsiella sp. MS 92-3] Length = 366 Score = 524 bits (1350), Expect = e-147, Method: Compositional matrix adjust. Identities = 246/361 (68%), Positives = 290/361 (80%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L +QYE QLAEKV RL+ MM F P ++FRS HYRMRAEF +WHDGDDLYHI+FD Sbjct: 6 LPTEQYEAQLAEKVVRLQTMMAPFAAPVPEVFRSPVSHYRMRAEFRLWHDGDDLYHIIFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQT+ R+R+D F S LIN LM M+ +R P+LR KLFQIDYLT+ S+QA+V+L+YH Sbjct: 66 QQTRSRIRVDSFPAASALINQLMTAMLEGVRNNPVLRQKLFQIDYLTTLSNQAVVSLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + LDDAWRE A LRDAL A+ + LIGRA KTKI LD+DY+DERL V GR +IYRQ+E Sbjct: 126 KKLDDAWREQAEALRDALRAQGLNVHLIGRATKTKIELDQDYIDERLPVGGREMIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+ MLEW L TKG GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKGATGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAANH++NV+I+RM+++EFTQAM R+FNRL+ ID+HSY+ +TIFVDPPRSGL Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVRQFNRLQGIDLHSYQCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D T MVQAYP ILYISCNP++LCR+L LS TH + RLALFDQFPYT HMECGVLL R Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCRNLETLSQTHNVTRLALFDQFPYTHHMECGVLLTR 365 Query: 365 K 365 K Sbjct: 366 K 366 >gi|261343029|ref|ZP_05970887.1| tRNA (uracil-5-)-methyltransferase [Enterobacter cancerogenus ATCC 35316] gi|288314783|gb|EFC53721.1| tRNA (uracil-5-)-methyltransferase [Enterobacter cancerogenus ATCC 35316] Length = 366 Score = 524 bits (1350), Expect = e-147, Method: Compositional matrix adjust. Identities = 247/361 (68%), Positives = 291/361 (80%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L +QY+ QLAEKV RL+ MM F P ++FRS HYRMRAEF IWHDGDDLYHI+FD Sbjct: 6 LPTEQYDAQLAEKVVRLQSMMTPFNAPVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTK R+R++ F S LIN LM MM +R P+LR KLFQIDYLT+QS+QAIV+L+YH Sbjct: 66 QQTKSRIRVNSFPAASELINQLMTLMMDGVRNNPVLRHKLFQIDYLTTQSNQAIVSLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + L+D WRE A LRDAL A+ + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E Sbjct: 126 KALNDEWREQAEALRDALRAQNLNVHLIGRATKTKIMLDQDYIDERLPVAGKEMIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +NV MLEW L ATKG GDLLELYCGNGNFSL LAR+F+RVLA EIAKPSV Sbjct: 186 NSFTQPNAAMNVQMLEWALNATKGSTGDLLELYCGNGNFSLALARNFERVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAANH++NV+I+RM+++EFTQAM REFNRL+ ID+ SY+ +TIFVDPPRSGL Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D T MVQAYP ILYISCNP++LC++L LS TH +ERLALFDQFPYT HMECGVLL Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHNVERLALFDQFPYTHHMECGVLLTA 365 Query: 365 K 365 K Sbjct: 366 K 366 >gi|152972754|ref|YP_001337900.1| tRNA (uracil-5-)-methyltransferase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|172052447|sp|A6TGE9|TRMA_KLEP7 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|150957603|gb|ABR79633.1| tRNA (uracil-5-)-methyltransferase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 366 Score = 523 bits (1348), Expect = e-146, Method: Compositional matrix adjust. Identities = 245/361 (67%), Positives = 290/361 (80%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L +QYE QLAEKV RL+ MM F P ++FRS HYRMRAEF +WHDGDDLYHI+FD Sbjct: 6 LPTEQYEAQLAEKVVRLQTMMAPFAAPVPEVFRSPVSHYRMRAEFRLWHDGDDLYHIIFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQT+ R+R+D F S LIN LM M+ +R P+LR KLFQIDYLT+ S+QA+V+++YH Sbjct: 66 QQTRSRIRVDSFPAASALINQLMTAMLEGVRNNPVLRQKLFQIDYLTTLSNQAVVSVLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + LDDAWRE A LRDAL A+ + LIGRA KTKI LD+DY+DERL V GR +IYRQ+E Sbjct: 126 KKLDDAWREQAEALRDALRAQGLNVHLIGRATKTKIELDQDYIDERLPVGGREMIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+ MLEW L TKG GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKGATGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAANH++NV+I+RM+++EFTQAM R+FNRL+ ID+HSY+ +TIFVDPPRSGL Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVRQFNRLQGIDLHSYQCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D T MVQAYP ILYISCNP++LCR+L LS TH + RLALFDQFPYT HMECGVLL R Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCRNLETLSQTHNVTRLALFDQFPYTHHMECGVLLTR 365 Query: 365 K 365 K Sbjct: 366 K 366 >gi|262041733|ref|ZP_06014924.1| tRNA (uracil-5-)-methyltransferase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259040920|gb|EEW42000.1| tRNA (uracil-5-)-methyltransferase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 366 Score = 523 bits (1346), Expect = e-146, Method: Compositional matrix adjust. Identities = 245/361 (67%), Positives = 289/361 (80%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L +QYE QLAEKV RL+ MM F P ++FRS HYRMRAEF +WHDGDDLYHI+FD Sbjct: 6 LPTEQYEAQLAEKVVRLQTMMAPFAAPVPEVFRSPVSHYRMRAEFRLWHDGDDLYHIIFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQT+ R+R+D F S LIN LM M+ +R P+LR KLFQIDYLT+ S+QA+V+L+YH Sbjct: 66 QQTRSRIRVDSFPAASALINQLMTAMLEGVRNNPVLRQKLFQIDYLTTLSNQAVVSLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + LDDAWRE A LRD L A+ + LIGRA KTKI LD+DY+DERL V GR +IYRQ+E Sbjct: 126 KKLDDAWREQAEALRDTLRAQGLNVHLIGRATKTKIELDQDYIDERLPVGGREMIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+ MLEW L TKG GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKGATGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAANH++NV+I+RM+++EFTQAM R+FNRL+ ID+HSY+ +TIFVDPPRSGL Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVRQFNRLQGIDLHSYQCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D T MVQAYP ILYISCNP++LCR+L LS TH + RLALFDQFPYT HMECGVLL R Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCRNLETLSQTHNVTRLALFDQFPYTHHMECGVLLTR 365 Query: 365 K 365 K Sbjct: 366 K 366 >gi|290513037|ref|ZP_06552400.1| tRNA (uracil-5-)-methyltransferase [Klebsiella sp. 1_1_55] gi|289774419|gb|EFD82424.1| tRNA (uracil-5-)-methyltransferase [Klebsiella sp. 1_1_55] Length = 366 Score = 523 bits (1346), Expect = e-146, Method: Compositional matrix adjust. Identities = 246/361 (68%), Positives = 289/361 (80%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L +QYE QLAEKV RL+ MM F P ++FRS HYRMRAEF +WHDGDDLYHI+FD Sbjct: 6 LPTEQYEAQLAEKVVRLQTMMAPFATPVPEVFRSPVSHYRMRAEFRLWHDGDDLYHIIFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQT+ R+R+D F S LIN LM M+ +R P+LR KLFQIDYLT+ S+QA+V+L+YH Sbjct: 66 QQTRSRIRVDSFPAASALINQLMTAMLEGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + LDDAWRE A LRDAL A+ + LIGRA KTKI LD+DY+DERL V GR +IYRQ+E Sbjct: 126 KKLDDAWREQAEALRDALRAQGLNVHLIGRATKTKIELDQDYIDERLPVGGREMIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+ MLEW L TKG GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKGATGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAANH++NV+I+RM+++EFTQAM REFNRL+ ID+ SY+ +TIFVDPPRSGL Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLQSYQCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D T MVQAYP ILYISCNP++LCR+L LS TH + RLALFDQFPYT HMECGVLL R Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCRNLETLSQTHNVTRLALFDQFPYTHHMECGVLLTR 365 Query: 365 K 365 K Sbjct: 366 K 366 >gi|332998394|gb|EGK17992.1| tRNA (uracil-5-)-methyltransferase [Shigella flexneri K-272] gi|333014087|gb|EGK33444.1| tRNA (uracil-5-)-methyltransferase [Shigella flexneri K-227] Length = 366 Score = 522 bits (1345), Expect = e-146, Method: Compositional matrix adjust. Identities = 247/361 (68%), Positives = 291/361 (80%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L +QYE QLAEKV RL+ MM F ++FRS HYRMRAEF IWHDGDDLYHI+FD Sbjct: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTK R+R+D F S LIN LM M+A +R P+LR KLFQIDYLT+ S+QA+V+L+YH Sbjct: 66 QQTKNRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + LDD WR+ A LRDAL A+ + LIGRA KTKI LD+DY+DERL VAG+ +IYRQIE Sbjct: 126 KKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIALDQDYIDERLPVAGKEMIYRQIE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+ MLEW L TKG +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAANH++NV+I+RM+++EFTQAM REFNRL+ ID+ SY+F+TIFVDPPRSGL Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQFETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D T MVQAYP ILYISCNP++LC++L LS TH +ERLALFDQFPYT HMECGVLL Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTA 365 Query: 365 K 365 K Sbjct: 366 K 366 >gi|24115259|ref|NP_709769.1| tRNA (uracil-5-)-methyltransferase [Shigella flexneri 2a str. 301] gi|30064744|ref|NP_838915.1| tRNA (uracil-5-)-methyltransferase [Shigella flexneri 2a str. 2457T] gi|82546316|ref|YP_410263.1| tRNA (uracil-5-)-methyltransferase [Shigella boydii Sb227] gi|50401541|sp|Q820Z9|TRMA_SHIFL RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|123558094|sp|Q31U23|TRMA_SHIBS RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|24054550|gb|AAN45476.1| tRNA (uracil-5-)-methyltransferase [Shigella flexneri 2a str. 301] gi|30043004|gb|AAP18726.1| tRNA (uracil-5-)-methyltransferase [Shigella flexneri 2a str. 2457T] gi|81247727|gb|ABB68435.1| tRNA (uracil-5-)-methyltransferase [Shigella boydii Sb227] gi|281603359|gb|ADA76343.1| tRNA (uracil-5-)-methyltransferase [Shigella flexneri 2002017] gi|313648863|gb|EFS13302.1| tRNA (uracil-5-)-methyltransferase [Shigella flexneri 2a str. 2457T] gi|332751536|gb|EGJ81935.1| tRNA (uracil-5-)-methyltransferase [Shigella flexneri 4343-70] gi|332751807|gb|EGJ82204.1| tRNA (uracil-5-)-methyltransferase [Shigella flexneri K-671] gi|332752553|gb|EGJ82939.1| tRNA (uracil-5-)-methyltransferase [Shigella flexneri 2747-71] gi|332764486|gb|EGJ94718.1| tRNA (uracil-5-)-methyltransferase [Shigella flexneri 2930-71] gi|332997951|gb|EGK17557.1| tRNA (uracil-5-)-methyltransferase [Shigella flexneri VA-6] gi|333014014|gb|EGK33374.1| tRNA (uracil-5-)-methyltransferase [Shigella flexneri K-304] Length = 366 Score = 522 bits (1344), Expect = e-146, Method: Compositional matrix adjust. Identities = 246/361 (68%), Positives = 291/361 (80%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L +QYE QLAEKV RL+ MM F ++FRS HYRMRAEF IWHDGDDLYHI+FD Sbjct: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTK R+R+D F S LIN LM M+A +R P+LR KLFQIDYLT+ S+QA+V+L+YH Sbjct: 66 QQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + LDD WR+ A LRDAL A+ + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E Sbjct: 126 KKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIALDQDYIDERLPVAGKEMIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+ MLEW L TKG +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAANH++NV+I+RM+++EFTQAM REFNRL+ ID+ SY+F+TIFVDPPRSGL Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQFETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D T MVQAYP ILYISCNP++LC++L LS TH +ERLALFDQFPYT HMECGVLL Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTA 365 Query: 365 K 365 K Sbjct: 366 K 366 >gi|288937811|ref|YP_003441870.1| tRNA (uracil-5-)-methyltransferase [Klebsiella variicola At-22] gi|288892520|gb|ADC60838.1| tRNA (uracil-5-)-methyltransferase [Klebsiella variicola At-22] Length = 366 Score = 521 bits (1343), Expect = e-146, Method: Compositional matrix adjust. Identities = 246/361 (68%), Positives = 288/361 (79%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L +QYE QLAEKV RL+ MM F P ++FRS HYRMRAEF +WHDGDDLYHI+FD Sbjct: 6 LPTEQYEAQLAEKVVRLQTMMAPFAAPVPEVFRSPVSHYRMRAEFRLWHDGDDLYHIIFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQT+ R+R+D F S LIN LM M+ +R P LR KLFQIDYLT+ S+QA+V+L+YH Sbjct: 66 QQTRSRIRVDSFPAASALINQLMTAMLEGVRNNPELRHKLFQIDYLTTLSNQAVVSLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + LDDAWRE A LRDAL A+ + LIGRA KTKI LD+DY+DERL V GR +IYRQ+E Sbjct: 126 KKLDDAWREQAEALRDALRAQGLNVHLIGRATKTKIELDQDYIDERLPVGGREMIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+ MLEW L TKG GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKGATGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAANH++NV+I+RM+++EFTQAM REFNRL+ ID+ SY+ +TIFVDPPRSGL Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLQSYQCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D T MVQAYP ILYISCNP++LCR+L LS TH + RLALFDQFPYT HMECGVLL R Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCRNLETLSQTHNVTRLALFDQFPYTHHMECGVLLTR 365 Query: 365 K 365 K Sbjct: 366 K 366 >gi|110807824|ref|YP_691344.1| tRNA (uracil-5-)-methyltransferase [Shigella flexneri 5 str. 8401] gi|123146465|sp|Q0SY26|TRMA_SHIF8 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|110617372|gb|ABF06039.1| tRNA (uracil-5-)-methyltransferase [Shigella flexneri 5 str. 8401] Length = 366 Score = 520 bits (1340), Expect = e-145, Method: Compositional matrix adjust. Identities = 245/361 (67%), Positives = 290/361 (80%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L +QYE QLAEKV RL+ MM F ++FRS HYRMRAEF IWHDGDDLYHI+FD Sbjct: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTK R+R+D F S LIN LM M+A +R P+LR KLFQIDYLT+ S+QA+V+L+YH Sbjct: 66 QQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + LDD WR+ A LRDAL A+ + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E Sbjct: 126 KKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIALDQDYIDERLPVAGKEMIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+ MLEW L TKG +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNI ANH++NV+I+RM+++EFTQAM REFNRL+ ID+ SY+F+TIFVDPPRSGL Sbjct: 246 AAAQYNITANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQFETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D T MVQAYP ILYISCNP++LC++L LS TH +ERLALFDQFPYT HMECGVLL Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTA 365 Query: 365 K 365 K Sbjct: 366 K 366 >gi|295095109|emb|CBK84199.1| tRNA (uracil-5-)-methyltransferase [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 366 Score = 520 bits (1340), Expect = e-145, Method: Compositional matrix adjust. Identities = 244/361 (67%), Positives = 291/361 (80%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L +QY+ QLAEKV RL+ MM F P ++FRS HYRMRAEF IWHDGDDLYHI+FD Sbjct: 6 LPTEQYDAQLAEKVVRLQSMMTPFNAPVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTK R+R+D F S LIN LM M+ +R P+LR KLFQIDYLT+QS+QAIV+L+YH Sbjct: 66 QQTKSRIRVDSFPAASELINQLMTLMIDGVRNNPVLRNKLFQIDYLTTQSNQAIVSLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + L D WRE A LRDAL A+ + LIGRA KTKI LD+DY+DERL VAG+ ++YRQ+E Sbjct: 126 KALTDEWREQAEALRDALRAQNINVHLIGRATKTKIMLDQDYIDERLPVAGKEMVYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +NV MLEW L AT+G +GDLLELYCGNGNFSL LAR+F+RVLA EIAKPSV Sbjct: 186 NSFTQPNAAMNVQMLEWALKATEGSKGDLLELYCGNGNFSLALARNFERVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAANH++NV+I+RM+++EFTQAM REFNRL+ ID+ SY+ +TIFVDPPRSGL Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D T MVQAYP ILYISCNP++LC++L LS TH +ERLALFDQFPYT HMECGVLL Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTA 365 Query: 365 K 365 + Sbjct: 366 R 366 >gi|296105348|ref|YP_003615494.1| tRNA (uracil-5-)-methyltransferase [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295059807|gb|ADF64545.1| tRNA (uracil-5-)-methyltransferase [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 366 Score = 519 bits (1336), Expect = e-145, Method: Compositional matrix adjust. Identities = 242/361 (67%), Positives = 292/361 (80%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L +QY+ QLAEKV RL+ MM F P ++FRS HYRMRAEF IWHDGDDLYHI+FD Sbjct: 6 LPTEQYDAQLAEKVVRLQSMMTPFNAPVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTK R+R++ F S LIN LM M+ +R P+LR KLFQIDYLT+QS+QAIV+L+YH Sbjct: 66 QQTKSRIRVNSFPAASELINQLMTLMIDGVRNNPVLRHKLFQIDYLTTQSNQAIVSLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + L+D WRE A LRDAL A+ + LIGRA KTKI LD+DY+DERL+VAG+ ++YRQ+E Sbjct: 126 KALNDEWREQAEALRDALRAQNINVHLIGRATKTKIMLDQDYIDERLSVAGKEMVYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +NV MLEW L AT+G +GDLLELYCGNGNFSL LAR+F+RVLA EIAKPSV Sbjct: 186 NSFTQPNAAMNVQMLEWALKATEGSKGDLLELYCGNGNFSLALARNFERVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAANH++NV+I+RM+++EFTQAM REFNRL+ ID+ Y+ +TIFVDPPRSGL Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLEGIDLKGYQCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D T MVQAYP ILYISCNP++LC++L LS TH +ERLALFDQFPYT HMECGVLL Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTA 365 Query: 365 K 365 + Sbjct: 366 R 366 >gi|146313653|ref|YP_001178727.1| tRNA (uracil-5-)-methyltransferase [Enterobacter sp. 638] gi|172046005|sp|A4WG46|TRMA_ENT38 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|145320529|gb|ABP62676.1| tRNA (uracil-5-)-methyltransferase [Enterobacter sp. 638] Length = 366 Score = 519 bits (1336), Expect = e-145, Method: Compositional matrix adjust. Identities = 244/361 (67%), Positives = 292/361 (80%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L +QY+ QLAEKV RL+ MM F P ++FRS HYRMRAEF IWHDGDDLYHI+FD Sbjct: 6 LPTEQYDAQLAEKVVRLQSMMTPFAAPVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTK R+R++ F S LIN LM M+ +R P LR KLFQIDYLT+QS+QAIV+++YH Sbjct: 66 QQTKSRIRVNSFPAASELINQLMTLMIEGVRNNPQLRHKLFQIDYLTTQSNQAIVSMLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + L D WR+ A LRDAL A+ + LIGRA KTKI LD+DYVDERL VAG+ +IYRQ+E Sbjct: 126 KKLGDEWRKEAEVLRDALRAQNINVHLIGRATKTKIMLDQDYVDERLPVAGKEMIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +NV MLEW L+AT+G +GDLLELYCGNGNFSL LAR+F+RVLA EIAKPSV Sbjct: 186 NSFTQPNAAMNVQMLEWALSATEGSKGDLLELYCGNGNFSLALARNFERVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 +A+YNIAANH++NV+I+RM+++EFTQAM EREFNRL+ ID+ SY+ +TIFVDPPRSGL Sbjct: 246 ASAQYNIAANHIDNVQIIRMAAEEFTQAMNGEREFNRLQGIDLKSYQCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D T MVQAYP ILYISCNP++LC++L LS TH +ERLALFDQFPYT HMECGVLL Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTL 365 Query: 365 K 365 K Sbjct: 366 K 366 >gi|323974255|gb|EGB69385.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli TW10509] Length = 366 Score = 519 bits (1336), Expect = e-145, Method: Compositional matrix adjust. Identities = 245/361 (67%), Positives = 290/361 (80%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L +QYE QLAEKV RL+ MM F ++FRS HYRMRAEF IWHDGDDLYHI+FD Sbjct: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTK R+R+D F S LIN LM M+A +R P+LR KLFQIDYLT+ S+QA+V+L+YH Sbjct: 66 QQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + LDD WR+ A LRDAL A+ + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E Sbjct: 126 KKLDDEWRQQAEALRDALRAQNLNVHLIGRATKTKIALDQDYIDERLPVAGKEMIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+ MLEW L TKG +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAANH++NV+I+RM+++EFTQAM REFNRL+ ID+ SY+ +TIFVDPPRSGL Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D T MVQAYP ILYISCNP++LC++L LS TH +ERLALFDQFPYT HMECGVLL Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTA 365 Query: 365 K 365 K Sbjct: 366 K 366 >gi|15804563|ref|NP_290604.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O157:H7 EDL933] gi|15834150|ref|NP_312923.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O157:H7 str. Sakai] gi|168761641|ref|ZP_02786648.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O157:H7 str. EC4501] gi|168786833|ref|ZP_02811840.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O157:H7 str. EC869] gi|168799442|ref|ZP_02824449.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O157:H7 str. EC508] gi|217326606|ref|ZP_03442690.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O157:H7 str. TW14588] gi|261226409|ref|ZP_05940690.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O157:H7 str. FRIK2000] gi|261256809|ref|ZP_05949342.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O157:H7 str. FRIK966] gi|291285387|ref|YP_003502205.1| tRNA (uracil-5-)-methyltransferase (tRNA(M-5-U54)- methyltransferase) [Escherichia coli O55:H7 str. CB9615] gi|293417475|ref|ZP_06660099.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli B185] gi|20178144|sp|Q8X723|TRMA_ECO57 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|12518892|gb|AAG59169.1|AE005628_5 tRNA (uracil-5-)-methyltransferase [Escherichia coli O157:H7 str. EDL933] gi|13364372|dbj|BAB38319.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O157:H7 str. Sakai] gi|189367875|gb|EDU86291.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O157:H7 str. EC4501] gi|189373235|gb|EDU91651.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O157:H7 str. EC869] gi|189378014|gb|EDU96430.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O157:H7 str. EC508] gi|209751938|gb|ACI74276.1| outer membrane vitamin B12 receptor protein BtuB [Escherichia coli] gi|209751940|gb|ACI74277.1| outer membrane vitamin B12 receptor protein BtuB [Escherichia coli] gi|209751942|gb|ACI74278.1| outer membrane vitamin B12 receptor protein BtuB [Escherichia coli] gi|209751944|gb|ACI74279.1| outer membrane vitamin B12 receptor protein BtuB [Escherichia coli] gi|217322827|gb|EEC31251.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O157:H7 str. TW14588] gi|290765260|gb|ADD59221.1| tRNA (uracil-5-)-methyltransferase (tRNA(M-5-U54)- methyltransferase) [Escherichia coli O55:H7 str. CB9615] gi|291430995|gb|EFF03991.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli B185] gi|320190931|gb|EFW65581.1| tRNA uracil-5--methyltransferase [Escherichia coli O157:H7 str. EC1212] gi|320639141|gb|EFX08777.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O157:H7 str. G5101] gi|320644533|gb|EFX13594.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O157:H- str. 493-89] gi|320649857|gb|EFX18372.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O157:H- str. H 2687] gi|320665949|gb|EFX32975.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O157:H7 str. LSU-61] gi|326338015|gb|EGD61845.1| tRNA uracil-5-methyltransferase [Escherichia coli O157:H7 str. 1044] gi|326342690|gb|EGD66463.1| tRNA uracil-5--methyltransferase [Escherichia coli O157:H7 str. 1125] Length = 366 Score = 518 bits (1335), Expect = e-145, Method: Compositional matrix adjust. Identities = 245/361 (67%), Positives = 290/361 (80%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L +QYE QLAEKV RL+ MM F ++FRS HYRMRAEF IWHDGDDLYHI+FD Sbjct: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTK R+R+D F S LIN LM M+A +R P+LR KLFQIDYLT+ S+QA+V+L+YH Sbjct: 66 QQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + LDD WR+ A LRDAL A+ + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E Sbjct: 126 KKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIALDQDYIDERLPVAGKEMIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+ MLEW L TKG +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAANH++NV+I+RM+++EFTQAM REFNRL+ ID+ SY+ +TIFVDPPRSGL Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D T MVQAYP ILYISCNP++LC++L LS TH +ERLALFDQFPYT HMECGVLL Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTA 365 Query: 365 K 365 K Sbjct: 366 K 366 >gi|301023751|ref|ZP_07187490.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 69-1] gi|300396895|gb|EFJ80433.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 69-1] Length = 366 Score = 518 bits (1335), Expect = e-145, Method: Compositional matrix adjust. Identities = 245/361 (67%), Positives = 290/361 (80%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L +QYE QLAEKV RL+ MM F ++FRS HYRMRAEF IWHDGDDLYHI+FD Sbjct: 6 LPTEQYEAQLAEKVVRLQSMMAPFSNLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTK R+R+D F S LIN LM M+A +R P+LR KLFQIDYLT+ S+QA+V+L+YH Sbjct: 66 QQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + LDD WR+ A LRDAL A+ + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E Sbjct: 126 KKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIALDQDYIDERLPVAGKEMIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+ MLEW L TKG +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAANH++NV+I+RM+++EFTQAM REFNRL+ ID+ SY+ +TIFVDPPRSGL Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D T MVQAYP ILYISCNP++LC++L LS TH +ERLALFDQFPYT HMECGVLL Sbjct: 306 DGETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTA 365 Query: 365 K 365 K Sbjct: 366 K 366 >gi|301645162|ref|ZP_07245119.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 146-1] gi|307140664|ref|ZP_07500020.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli H736] gi|331644703|ref|ZP_08345822.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli H736] gi|301076541|gb|EFK91347.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 146-1] gi|315617762|gb|EFU98367.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli 3431] gi|331036165|gb|EGI08401.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli H736] Length = 366 Score = 518 bits (1335), Expect = e-145, Method: Compositional matrix adjust. Identities = 246/361 (68%), Positives = 290/361 (80%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L +QYE QLAEKV RL+ MM F ++FRS HYRMRAEF IWHDGDDLYHI+FD Sbjct: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTK R+R+D F S LIN LM M+A +R P+LR KLFQIDYLT+ S+QA+V+L+YH Sbjct: 66 QQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + LDD WR+ A LRDAL A+ + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E Sbjct: 126 KKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+ MLEW L TKG +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAANH++NV+I+RMS++EFTQAM REFNRL+ ID+ SY+ +TIFVDPPRSGL Sbjct: 246 AAAQYNIAANHIDNVQIIRMSAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D T MVQAYP ILYISCNP++LC++L LS TH +ERLALFDQFPYT HMECGVLL Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTA 365 Query: 365 K 365 K Sbjct: 366 K 366 >gi|320660831|gb|EFX28281.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O55:H7 str. USDA 5905] Length = 366 Score = 518 bits (1335), Expect = e-145, Method: Compositional matrix adjust. Identities = 245/361 (67%), Positives = 290/361 (80%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L +QYE QLAEKV RL+ MM F ++FRS HYRMRAEF IWHDGDDLYHI+FD Sbjct: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTK R+R+D F S LIN LM M+A +R P+LR KLFQIDYLT+ S+QA+V+L+YH Sbjct: 66 QQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRYKLFQIDYLTTLSNQAVVSLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + LDD WR+ A LRDAL A+ + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E Sbjct: 126 KKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIALDQDYIDERLPVAGKEMIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+ MLEW L TKG +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAANH++NV+I+RM+++EFTQAM REFNRL+ ID+ SY+ +TIFVDPPRSGL Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D T MVQAYP ILYISCNP++LC++L LS TH +ERLALFDQFPYT HMECGVLL Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTA 365 Query: 365 K 365 K Sbjct: 366 K 366 >gi|331655665|ref|ZP_08356657.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli M718] gi|331046766|gb|EGI18851.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli M718] Length = 366 Score = 518 bits (1335), Expect = e-145, Method: Compositional matrix adjust. Identities = 245/361 (67%), Positives = 290/361 (80%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L +QYE QLAEKV RL+ MM F ++FRS HYRMRAEF IWHDGDDLYHI+FD Sbjct: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTK R+R+D F S LIN LM M+A +R P+LR KLFQIDYLT+ S+QA+V+L+YH Sbjct: 66 QQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + LDD WR+ A LRDAL A+ + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E Sbjct: 126 KKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIALDQDYIDERLPVAGKEMIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+ MLEW L TKG +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAANH++NV+I+RM+++EFTQAM REFNRL+ ID+ SY+ +TIFVDPPRSGL Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D T MVQAYP ILYISCNP++LC++L LS TH +ERLALFDQFPYT HMECGVLL Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTA 365 Query: 365 K 365 K Sbjct: 366 K 366 >gi|206579514|ref|YP_002241174.1| tRNA (uracil-5-)-methyltransferase [Klebsiella pneumoniae 342] gi|226705982|sp|B5XZ11|TRMA_KLEP3 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|206568572|gb|ACI10348.1| tRNA (uracil-5-)-methyltransferase [Klebsiella pneumoniae 342] Length = 366 Score = 518 bits (1334), Expect = e-145, Method: Compositional matrix adjust. Identities = 244/361 (67%), Positives = 287/361 (79%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L +QYE QLAEKV RL+ MM F P ++FRS HYRMRAEF +WHDGDDLYHI+FD Sbjct: 6 LPTEQYEAQLAEKVVRLQTMMAPFAAPVPEVFRSPVSHYRMRAEFRLWHDGDDLYHIIFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQT+ R+R+D F S LIN LM M+ +R P+LR KLFQIDYLT+ S+QA+V+L+YH Sbjct: 66 QQTRSRIRVDSFPAASALINQLMTAMLEGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + LDD WRE A LRDAL A+ + LIGRA KTKI LD+DY+DERL V GR +IYRQ+E Sbjct: 126 KKLDDTWREQAEALRDALRAQGLNVHLIGRATKTKIELDQDYIDERLPVGGREMIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+ MLEW L TK GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKEATGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAANH++NV+I+RM+++EFTQAM REFNRL+ ID+ SY+ +TIFVDPPRSGL Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLQSYQCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D T MVQAYP ILYISCNP++LCR+L LS TH + RLALFDQFPYT HMECGVLL R Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCRNLETLSQTHNVTRLALFDQFPYTHHMECGVLLTR 365 Query: 365 K 365 K Sbjct: 366 K 366 >gi|331685711|ref|ZP_08386294.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli H299] gi|331077182|gb|EGI48397.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli H299] Length = 366 Score = 518 bits (1334), Expect = e-145, Method: Compositional matrix adjust. Identities = 245/361 (67%), Positives = 290/361 (80%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L +QYE QLAEKV RL+ MM F ++FRS HYRMRAEF IWHDGDDLYHI+FD Sbjct: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPASHYRMRAEFRIWHDGDDLYHIIFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTK R+R+D F S LIN LM M+A +R P+LR KLFQIDYLT+ S+QA+V+L+YH Sbjct: 66 QQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPILRHKLFQIDYLTTLSNQAVVSLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + LDD WR+ A LRDAL A+ + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E Sbjct: 126 KKLDDEWRQQAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+ MLEW L TKG +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAANH++NV+I+RM+++EFTQAM REFNRL+ ID+ SY+ +TIFVDPPRSGL Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D T MVQAYP ILYISCNP++LC++L LS TH +ERLALFDQFPYT HMECGVLL Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTA 365 Query: 365 K 365 K Sbjct: 366 K 366 >gi|91213517|ref|YP_543503.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli UTI89] gi|110644309|ref|YP_672039.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli 536] gi|117626238|ref|YP_859561.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli APEC O1] gi|191172684|ref|ZP_03034222.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli F11] gi|218561040|ref|YP_002393953.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli S88] gi|227885284|ref|ZP_04003089.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli 83972] gi|237703006|ref|ZP_04533487.1| tRNA (uracil-5-)-methyltransferase [Escherichia sp. 3_2_53FAA] gi|300975975|ref|ZP_07173247.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 45-1] gi|331660529|ref|ZP_08361463.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli TA206] gi|122421621|sp|Q1R3U2|TRMA_ECOUT RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|123343349|sp|Q0TA91|TRMA_ECOL5 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|134035058|sp|A1AIE7|TRMA_ECOK1 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|226705972|sp|B7MIA5|TRMA_ECO45 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|91075091|gb|ABE09972.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli UTI89] gi|110345901|gb|ABG72138.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli 536] gi|115515362|gb|ABJ03437.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli APEC O1] gi|190906988|gb|EDV66589.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli F11] gi|218367809|emb|CAR05603.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli S88] gi|222035685|emb|CAP78430.1| hypothetical protein LF82_2304 [Escherichia coli LF82] gi|226902943|gb|EEH89202.1| tRNA (uracil-5-)-methyltransferase [Escherichia sp. 3_2_53FAA] gi|227837736|gb|EEJ48202.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli 83972] gi|294493983|gb|ADE92739.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli IHE3034] gi|300410165|gb|EFJ93703.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 45-1] gi|307556117|gb|ADN48892.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli ABU 83972] gi|307629046|gb|ADN73350.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli UM146] gi|312948548|gb|ADR29375.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O83:H1 str. NRG 857C] gi|315289657|gb|EFU49050.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 110-3] gi|315292667|gb|EFU52019.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 153-1] gi|315298484|gb|EFU57739.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 16-3] gi|320196760|gb|EFW71382.1| tRNA uracil-5--methyltransferase [Escherichia coli WV_060327] gi|323949463|gb|EGB45352.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli H252] gi|323954256|gb|EGB50041.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli H263] gi|324012462|gb|EGB81681.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 60-1] gi|331052478|gb|EGI24515.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli TA206] Length = 366 Score = 518 bits (1334), Expect = e-145, Method: Compositional matrix adjust. Identities = 244/361 (67%), Positives = 290/361 (80%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L +QYE QLAEKV RL+ MM F ++FRS HYRMRAEF IWHDGDDLYHI+FD Sbjct: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTK R+R+D F S LIN LM M+A +R P+LR KLFQIDYLT+ S+QA+V+L+YH Sbjct: 66 QQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPILRHKLFQIDYLTTLSNQAVVSLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + LDD WR+ A LRDAL A+ + LIGRA KTKI LD+DY+DERL +AG+ +IYRQ+E Sbjct: 126 KKLDDEWRQQAEALRDALRAQNLNVHLIGRATKTKIALDQDYIDERLPIAGKEMIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+ MLEW L TKG +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAANH++NV+I+RM+++EFTQAM REFNRL+ ID+ SY+ +TIFVDPPRSGL Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D T MVQAYP ILYISCNP++LC++L LS TH +ERLALFDQFPYT HMECGVLL Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTA 365 Query: 365 K 365 K Sbjct: 366 K 366 >gi|306813764|ref|ZP_07447940.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli NC101] gi|305852762|gb|EFM53209.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli NC101] gi|324006693|gb|EGB75912.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 57-2] Length = 366 Score = 518 bits (1333), Expect = e-145, Method: Compositional matrix adjust. Identities = 245/361 (67%), Positives = 289/361 (80%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L +QYE QLAEKV RL+ MM F ++FRS HYRMRAEF IWHDGDDLYHI+FD Sbjct: 6 LPTEQYEAQLAEKVVRLQSMMAPFSNLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTK R+R+D F S LIN LM M+A +R P LR KLFQIDYLT+ S+QA+V+L+YH Sbjct: 66 QQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPFLRHKLFQIDYLTTLSNQAVVSLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + LDD WR+ A LRDAL A+ + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E Sbjct: 126 KKLDDGWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+ MLEW L TKG +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAANH++NV+I+RM+++EFTQAM REFNRL+ ID+ SY+ +TIFVDPPRSGL Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D T MVQAYP ILYISCNP++LC++L LS TH +ERLALFDQFPYT HMECGVLL Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTA 365 Query: 365 K 365 K Sbjct: 366 K 366 >gi|260595992|ref|YP_003208563.1| tRNA (uracil-5-)-methyltransferase [Cronobacter turicensis z3032] gi|260215169|emb|CBA26983.1| tRNA (uracil-5-)-methyltransferase [Cronobacter turicensis z3032] Length = 367 Score = 518 bits (1333), Expect = e-145, Method: Compositional matrix adjust. Identities = 244/361 (67%), Positives = 289/361 (80%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L IDQY+ QLAEK +RL+ MM F P ++FRS HYRMRAEF +WHDGDDLYHI+FD Sbjct: 6 LPIDQYDAQLAEKTERLQSMMAPFAAPAPEVFRSPVSHYRMRAEFRLWHDGDDLYHIIFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 Q+T+ R+R+D F S LINALM M+ IR LR KLFQIDYLT++S QA+V+L+YH Sbjct: 66 QETRSRIRVDSFPAASELINALMPRMIEGIRGNRTLRHKLFQIDYLTTRSQQAVVSLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 R L D WRE A RLRDAL A + + IGRA KTKI LD+DY+DERL VAG +IYRQ+E Sbjct: 126 RALGDDWREEATRLRDALRADGFDVHFIGRATKTKIMLDQDYIDERLPVAGTEMIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+HMLEW L AT G +GDLLELYCGNGNFSL LAR+F+RVLA EIAKPSV Sbjct: 186 NSFTQPNAAMNIHMLEWALDATLGSKGDLLELYCGNGNFSLALARNFNRVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAANH++NV+I+RM+++EFTQAM REFNRL+ +D+ SY+ +TIFVDPPRSGL Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGVDLKSYQCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D TV MVQAYP ILYISCNP +LC +L LS TH +ERLALFDQFPYT HMECGVLL R Sbjct: 306 DQETVKMVQAYPRILYISCNPQTLCENLETLSQTHRVERLALFDQFPYTHHMECGVLLTR 365 Query: 365 K 365 + Sbjct: 366 R 366 >gi|331665621|ref|ZP_08366519.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli TA143] gi|331057306|gb|EGI29296.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli TA143] Length = 366 Score = 517 bits (1332), Expect = e-145, Method: Compositional matrix adjust. Identities = 245/361 (67%), Positives = 290/361 (80%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L +QYE QLAEKV RL+ MM F ++FRS HYRMRAEF IWHDGDDLYHI+FD Sbjct: 6 LPTEQYEAQLAEKVVRLQSMMAPFSNLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTK R+R+D F S LIN LM M+A +R P+LR KLFQIDYLT+ S+QA+V+L+YH Sbjct: 66 QQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + LDD WR+ A LRDAL A+ + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E Sbjct: 126 KKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+ MLEW L TKG +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAANH++NV+I+RM+++EFTQAM REFNRL+ ID+ SY+ +TIFVDPPRSGL Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D T MVQAYP ILYISCNP++LC++L LS TH +ERLALFDQFPYT HMECGVLL Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTA 365 Query: 365 K 365 K Sbjct: 366 K 366 >gi|215489306|ref|YP_002331737.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O127:H6 str. E2348/69] gi|312965374|ref|ZP_07779607.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli 2362-75] gi|254789075|sp|B7UNU5|TRMA_ECO27 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|215267378|emb|CAS11829.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O127:H6 str. E2348/69] gi|312290048|gb|EFR17935.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli 2362-75] Length = 366 Score = 517 bits (1332), Expect = e-145, Method: Compositional matrix adjust. Identities = 245/361 (67%), Positives = 290/361 (80%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L +QYE QLAEKV RL+ MM F ++FRS HYRMRAEF IWHDGDDLYHI+FD Sbjct: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTK R+R+D F S LIN LM M+A +R P+LR KLFQIDYLT+ S+QA+V+L+YH Sbjct: 66 QQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + LDD WR+ A LRDAL A+ + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E Sbjct: 126 KKLDDEWRQQAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+ MLEW L TKG +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAANH++NV+I+RM+++EFTQAM REFNRL+ ID+ SY+ +TIFVDPPRSGL Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D T MVQAYP ILYISCNP++LC++L LS TH +ERLALFDQFPYT HMECGVLL Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTA 365 Query: 365 K 365 K Sbjct: 366 K 366 >gi|323964325|gb|EGB59808.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli M863] gi|327250611|gb|EGE62319.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli STEC_7v] Length = 366 Score = 517 bits (1332), Expect = e-144, Method: Compositional matrix adjust. Identities = 244/361 (67%), Positives = 289/361 (80%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L +QYE QLAEKV RL+ MM F ++FRS HYRMRAEF IWHDGDDLYHI+FD Sbjct: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTK R+R+D F S LIN LM M+ +R P+LR KLFQIDYLT+ S+QA+V+L+YH Sbjct: 66 QQTKSRIRVDSFPAASELINQLMTAMITGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + LDD WR+ A LRDAL A+ + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E Sbjct: 126 KKLDDEWRQQAEALRDALRAQNLNVHLIGRATKTKIALDQDYIDERLPVAGKEMIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+ MLEW L TKG +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAANH++NV+I+RM+++EFTQAM REFNRL+ ID+ SY+ +TIFVDPPRSGL Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D T MVQAYP ILYISCNP++LC++L LS TH +ERLALFDQFPYT HMECGVLL Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTA 365 Query: 365 K 365 K Sbjct: 366 K 366 >gi|188496220|ref|ZP_03003490.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli 53638] gi|188491419|gb|EDU66522.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli 53638] Length = 366 Score = 517 bits (1332), Expect = e-144, Method: Compositional matrix adjust. Identities = 245/361 (67%), Positives = 290/361 (80%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L +QYE QLAEKV RL+ MM F ++FRS HYRMRAEF IWHDGDDLYHI+FD Sbjct: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTK R+R+D F S LIN LM M+A +R P+LR KLFQIDYLT+ S+QA+V+L+YH Sbjct: 66 QQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + LDD WR+ A LRDAL A+ + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E Sbjct: 126 KKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+ MLEW L TKG +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAANH++NV+I+RM+++EFTQAM REFNRL+ ID+ SY+ +TIFVDPPRSGL Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D T MVQAYP ILYISCNP++LC++L LS TH +ERLALFDQFPYT HMECGVLL Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTA 365 Query: 365 K 365 K Sbjct: 366 K 366 >gi|16131803|ref|NP_418400.1| tRNA m(5)U54 methyltransferase, SAM-dependen [Escherichia coli str. K-12 substr. MG1655] gi|89110065|ref|AP_003845.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli str. K-12 substr. W3110] gi|157155127|ref|YP_001465464.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli E24377A] gi|157163442|ref|YP_001460760.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli HS] gi|170022023|ref|YP_001726977.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli ATCC 8739] gi|170083434|ref|YP_001732754.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli str. K-12 substr. DH10B] gi|191169527|ref|ZP_03031257.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli B7A] gi|193064005|ref|ZP_03045091.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli E22] gi|193068008|ref|ZP_03048973.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli E110019] gi|194429393|ref|ZP_03061917.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli B171] gi|194433193|ref|ZP_03065474.1| tRNA (uracil-5-)-methyltransferase [Shigella dysenteriae 1012] gi|194438266|ref|ZP_03070357.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli 101-1] gi|209921451|ref|YP_002295535.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli SE11] gi|218556528|ref|YP_002389442.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli IAI1] gi|218697681|ref|YP_002405348.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli 55989] gi|238903030|ref|YP_002928826.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli BW2952] gi|253775396|ref|YP_003038227.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254039227|ref|ZP_04873277.1| tRNA (uracil-5-)-methyltransferase [Escherichia sp. 1_1_43] gi|254163915|ref|YP_003047023.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli B str. REL606] gi|256021670|ref|ZP_05435535.1| tRNA (uracil-5-)-methyltransferase [Shigella sp. D9] gi|256025996|ref|ZP_05439861.1| tRNA (uracil-5-)-methyltransferase [Escherichia sp. 4_1_40B] gi|260846774|ref|YP_003224552.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O103:H2 str. 12009] gi|300819387|ref|ZP_07099585.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 107-1] gi|300824362|ref|ZP_07104477.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 119-7] gi|300902586|ref|ZP_07120562.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 84-1] gi|300926199|ref|ZP_07142005.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 182-1] gi|300928748|ref|ZP_07144264.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 187-1] gi|300954725|ref|ZP_07167159.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 175-1] gi|301024174|ref|ZP_07187883.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 196-1] gi|301307107|ref|ZP_07213140.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 124-1] gi|301324909|ref|ZP_07218470.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 78-1] gi|309797136|ref|ZP_07691533.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 145-7] gi|312971741|ref|ZP_07785915.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli 1827-70] gi|331670823|ref|ZP_08371659.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli TA271] gi|331680089|ref|ZP_08380751.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli H591] gi|332282911|ref|ZP_08395324.1| tRNA (uracil-5-)-methyltransferase [Shigella sp. D9] gi|136247|sp|P23003|TRMA_ECOLI RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|171855253|sp|A7ZUI5|TRMA_ECO24 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|172044453|sp|A8A773|TRMA_ECOHS RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|189036039|sp|B1IVB3|TRMA_ECOLC RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|226705975|sp|B7M721|TRMA_ECO8A RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|226705976|sp|B1XBX6|TRMA_ECODH RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|226705978|sp|B6I5I3|TRMA_ECOSE RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|254789076|sp|B7LA67|TRMA_ECO55 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|259547823|sp|C5A0R4|TRMA_ECOBW RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|262827689|sp|C5WBK5|TRMA_ECOBB RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|262827695|sp|C6UJK3|TRMA_ECOBR RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|148051|gb|AAA24691.1| m-5-U54 transfer RNA methyltransferase [Escherichia coli] gi|396312|gb|AAC43071.1| tRNA (uracil-5)-methyltransferase [Escherichia coli str. K-12 substr. MG1655] gi|1790403|gb|AAC76947.1| tRNA m(5)U54 methyltransferase, SAM-dependen [Escherichia coli str. K-12 substr. MG1655] gi|85676096|dbj|BAE77346.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli str. K12 substr. W3110] gi|157069122|gb|ABV08377.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli HS] gi|157077157|gb|ABV16865.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli E24377A] gi|169756951|gb|ACA79650.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli ATCC 8739] gi|169891269|gb|ACB04976.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli str. K-12 substr. DH10B] gi|190900432|gb|EDV60251.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli B7A] gi|192929470|gb|EDV83078.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli E22] gi|192958628|gb|EDV89066.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli E110019] gi|194412540|gb|EDX28838.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli B171] gi|194418477|gb|EDX34565.1| tRNA (uracil-5-)-methyltransferase [Shigella dysenteriae 1012] gi|194422703|gb|EDX38699.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli 101-1] gi|209914710|dbj|BAG79784.1| tRNA (uracil-5)-methyltransferase [Escherichia coli SE11] gi|218354413|emb|CAV01205.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli 55989] gi|218363297|emb|CAR00946.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli IAI1] gi|226838663|gb|EEH70692.1| tRNA (uracil-5-)-methyltransferase [Escherichia sp. 1_1_43] gi|238863708|gb|ACR65706.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli BW2952] gi|242379501|emb|CAQ34316.1| tRNA m[5]U54 methyltransferase [Escherichia coli BL21(DE3)] gi|253326440|gb|ACT31042.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253975816|gb|ACT41487.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli B str. REL606] gi|253979973|gb|ACT45643.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli BL21(DE3)] gi|257761921|dbj|BAI33418.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O103:H2 str. 12009] gi|260451199|gb|ACX41621.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli DH1] gi|299880533|gb|EFI88744.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 196-1] gi|300318306|gb|EFJ68090.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 175-1] gi|300405346|gb|EFJ88884.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 84-1] gi|300417764|gb|EFK01075.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 182-1] gi|300463273|gb|EFK26766.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 187-1] gi|300523168|gb|EFK44237.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 119-7] gi|300528070|gb|EFK49132.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 107-1] gi|300837690|gb|EFK65450.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 124-1] gi|300848193|gb|EFK75953.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 78-1] gi|308119215|gb|EFO56477.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 145-7] gi|309704389|emb|CBJ03738.1| tRNA (uracil-5)-methyltransferase [Escherichia coli ETEC H10407] gi|310334118|gb|EFQ00323.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli 1827-70] gi|315138530|dbj|BAJ45689.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli DH1] gi|315253601|gb|EFU33569.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 85-1] gi|320180305|gb|EFW55237.1| tRNA uracil-5--methyltransferase [Shigella boydii ATCC 9905] gi|320201540|gb|EFW76118.1| tRNA uracil-5--methyltransferase [Escherichia coli EC4100B] gi|323161256|gb|EFZ47169.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli E128010] gi|323182070|gb|EFZ67480.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli 1357] gi|323934454|gb|EGB30867.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli E1520] gi|323939046|gb|EGB35264.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli E482] gi|323943618|gb|EGB39725.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli H120] gi|323959266|gb|EGB54927.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli H489] gi|323969717|gb|EGB65001.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli TA007] gi|324019674|gb|EGB88893.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 117-3] gi|324115514|gb|EGC09455.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli E1167] gi|331062078|gb|EGI34001.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli TA271] gi|331072415|gb|EGI43748.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli H591] gi|332083983|gb|EGI89192.1| tRNA (uracil-5-)-methyltransferase [Shigella boydii 5216-82] gi|332085302|gb|EGI90476.1| tRNA (uracil-5-)-methyltransferase [Shigella dysenteriae 155-74] gi|332105263|gb|EGJ08609.1| tRNA (uracil-5-)-methyltransferase [Shigella sp. D9] gi|332345962|gb|AEE59296.1| tRNA (uracil-5-)-methyltransferase TrmA [Escherichia coli UMNK88] Length = 366 Score = 517 bits (1332), Expect = e-144, Method: Compositional matrix adjust. Identities = 245/361 (67%), Positives = 290/361 (80%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L +QYE QLAEKV RL+ MM F ++FRS HYRMRAEF IWHDGDDLYHI+FD Sbjct: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTK R+R+D F S LIN LM M+A +R P+LR KLFQIDYLT+ S+QA+V+L+YH Sbjct: 66 QQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + LDD WR+ A LRDAL A+ + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E Sbjct: 126 KKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+ MLEW L TKG +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAANH++NV+I+RM+++EFTQAM REFNRL+ ID+ SY+ +TIFVDPPRSGL Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D T MVQAYP ILYISCNP++LC++L LS TH +ERLALFDQFPYT HMECGVLL Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTA 365 Query: 365 K 365 K Sbjct: 366 K 366 >gi|218692255|ref|YP_002400467.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli ED1a] gi|254789077|sp|B7MR93|TRMA_ECO81 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|218429819|emb|CAR10781.2| tRNA (uracil-5-)-methyltransferase [Escherichia coli ED1a] Length = 366 Score = 517 bits (1331), Expect = e-144, Method: Compositional matrix adjust. Identities = 245/361 (67%), Positives = 289/361 (80%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L +QYE QLAEKV RL+ MM F ++FRS HYRMRAEF IWHDGDDLYHI+FD Sbjct: 6 LPTEQYEAQLAEKVVRLQSMMAPFSNLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTK R+R+D F S LIN LM M+A +R P LR KLFQIDYLT+ S+QA+V+L+YH Sbjct: 66 QQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPFLRHKLFQIDYLTTLSNQAVVSLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + LDD WR+ A LRDAL A+ + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E Sbjct: 126 KKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+ MLEW L TKG +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAANH++NV+I+RM+++EFTQAM REFNRL+ ID+ SY+ +TIFVDPPRSGL Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D T MVQAYP ILYISCNP++LC++L LS TH +ERLALFDQFPYT HMECGVLL Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTA 365 Query: 365 K 365 K Sbjct: 366 K 366 >gi|170681986|ref|YP_001746357.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli SMS-3-5] gi|218707592|ref|YP_002415111.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli UMN026] gi|293407586|ref|ZP_06651505.1| tRNA (Uracil54-C5-)-methyltransferase [Escherichia coli FVEC1412] gi|298383334|ref|ZP_06992927.1| tRNA (Uracil54-C5-)-methyltransferase [Escherichia coli FVEC1302] gi|300896470|ref|ZP_07114997.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 198-1] gi|226705977|sp|B7NFR5|TRMA_ECOLU RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|226705979|sp|B1LNS5|TRMA_ECOSM RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|170519704|gb|ACB17882.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli SMS-3-5] gi|218434689|emb|CAR15622.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli UMN026] gi|284924066|emb|CBG37165.1| tRNA (uracil-5)-methyltransferase [Escherichia coli 042] gi|291425503|gb|EFE98542.1| tRNA (Uracil54-C5-)-methyltransferase [Escherichia coli FVEC1412] gi|298276368|gb|EFI17888.1| tRNA (Uracil54-C5-)-methyltransferase [Escherichia coli FVEC1302] gi|300359663|gb|EFJ75533.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 198-1] Length = 366 Score = 517 bits (1331), Expect = e-144, Method: Compositional matrix adjust. Identities = 245/361 (67%), Positives = 290/361 (80%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L +QYE QLAEKV RL+ MM F ++FRS HYRMRAEF IWHDGDDLYHI+FD Sbjct: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTK R+R+D F S LIN LM M+A +R P+LR KLFQIDYLT+ S+QA+V+L+YH Sbjct: 66 QQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + LDD WR+ A LRDAL A+ + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E Sbjct: 126 KKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+ MLEW L TKG +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAANH++NV+I+RM+++EFTQAM REFNRL+ ID+ SY+ +TIFVDPPRSGL Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D T MVQAYP ILYISCNP++LC++L LS TH +ERLALFDQFPYT HMECGVLL Sbjct: 306 DGETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTA 365 Query: 365 K 365 K Sbjct: 366 K 366 >gi|170769705|ref|ZP_02904158.1| tRNA (uracil-5-)-methyltransferase [Escherichia albertii TW07627] gi|170121513|gb|EDS90444.1| tRNA (uracil-5-)-methyltransferase [Escherichia albertii TW07627] Length = 366 Score = 516 bits (1330), Expect = e-144, Method: Compositional matrix adjust. Identities = 245/361 (67%), Positives = 290/361 (80%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L +QYE QLAEKV RL+ MM F ++FRS HYRMRAEF IWHDGDDLYHI+FD Sbjct: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTK R+R++ F S LIN LM M+A +R P+LR KLFQIDYLT+ S+QA+V+L+YH Sbjct: 66 QQTKSRIRVESFPAASELINQLMTAMIAGVRNNPVLRNKLFQIDYLTTLSNQAVVSLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + LDD WR+ A LRDAL A+ + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E Sbjct: 126 KKLDDEWRQQAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+ MLEW L TKG +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAANH++NV+I+RM+++EFTQAM REFNRL+ ID+ SY+ +TIFVDPPRSGL Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D T MVQAYP ILYISCNP++LC++L LS TH IERLALFDQFPYT HMECGVLL Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKIERLALFDQFPYTHHMECGVLLTA 365 Query: 365 K 365 K Sbjct: 366 K 366 >gi|301048610|ref|ZP_07195623.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 185-1] gi|300299530|gb|EFJ55915.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 185-1] Length = 366 Score = 516 bits (1329), Expect = e-144, Method: Compositional matrix adjust. Identities = 243/361 (67%), Positives = 289/361 (80%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L +QYE QLAEKV RL+ MM F ++FRS HYRMRAEF IWHDGDDLYHI+FD Sbjct: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTK R+R+D F S LIN LM M+A +R P+LR KLFQIDYLT+ S+QA+V+L+YH Sbjct: 66 QQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPILRHKLFQIDYLTTLSNQAVVSLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + LDD WR+ A LRDAL A+ + LIGRA KTKI LD+DY+DERL +AG+ +IYRQ+E Sbjct: 126 KKLDDEWRQQAEALRDALRAQNLNVHLIGRATKTKIALDQDYIDERLPIAGKEMIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+ MLEW L TKG +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAANH++NV+I+RM+++EFTQAM REFNRL+ ID+ SY+ + IFVDPPRSGL Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCEAIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D T MVQAYP ILYISCNP++LC++L LS TH +ERLALFDQFPYT HMECGVLL Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTA 365 Query: 365 K 365 K Sbjct: 366 K 366 >gi|74314467|ref|YP_312886.1| tRNA (uracil-5-)-methyltransferase [Shigella sonnei Ss046] gi|187731935|ref|YP_001882659.1| tRNA (uracil-5-)-methyltransferase [Shigella boydii CDC 3083-94] gi|260858083|ref|YP_003231974.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O26:H11 str. 11368] gi|260870685|ref|YP_003237087.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O111:H- str. 11128] gi|123615618|sp|Q3YV11|TRMA_SHISS RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|226705994|sp|B2TWG0|TRMA_SHIB3 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|73857944|gb|AAZ90651.1| tRNA (uracil-5-)-methyltransferase [Shigella sonnei Ss046] gi|187428927|gb|ACD08201.1| tRNA (uracil-5-)-methyltransferase [Shigella boydii CDC 3083-94] gi|257756732|dbj|BAI28234.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O26:H11 str. 11368] gi|257767041|dbj|BAI38536.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O111:H- str. 11128] gi|320182827|gb|EFW57704.1| tRNA uracil-5--methyltransferase [Shigella flexneri CDC 796-83] gi|323155496|gb|EFZ41675.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli EPECa14] gi|323167444|gb|EFZ53152.1| tRNA (uracil-5-)-methyltransferase [Shigella sonnei 53G] gi|323174292|gb|EFZ59918.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli LT-68] gi|323177991|gb|EFZ63575.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli 1180] gi|332088253|gb|EGI93373.1| tRNA (uracil-5-)-methyltransferase [Shigella boydii 3594-74] Length = 366 Score = 516 bits (1329), Expect = e-144, Method: Compositional matrix adjust. Identities = 245/361 (67%), Positives = 290/361 (80%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L +QYE QLAEKV RL+ MM F ++FRS HYRMRAEF IWHDGDDLYHI+FD Sbjct: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTK R+R+D F S LIN LM M+A +R P+LR KLFQIDYLT+ S+QA+V+L+YH Sbjct: 66 QQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + LDD WR+ A LRDAL A+ + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E Sbjct: 126 KKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+ MLEW L TKG +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAANH++NV+I+RM+++EFTQAM REFNRL+ ID+ SY+ +TIFVDPPRSGL Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D T MVQAYP ILYISCNP++LC++L LS TH +ERLALFDQFPYT HMECGVLL Sbjct: 306 DSETEKMVQAYPCILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTA 365 Query: 365 K 365 K Sbjct: 366 K 366 >gi|168748726|ref|ZP_02773748.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O157:H7 str. EC4113] gi|168755661|ref|ZP_02780668.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O157:H7 str. EC4401] gi|168768279|ref|ZP_02793286.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O157:H7 str. EC4486] gi|168775188|ref|ZP_02800195.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O157:H7 str. EC4196] gi|168780894|ref|ZP_02805901.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O157:H7 str. EC4076] gi|195937617|ref|ZP_03082999.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O157:H7 str. EC4024] gi|208808578|ref|ZP_03250915.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O157:H7 str. EC4206] gi|208813900|ref|ZP_03255229.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O157:H7 str. EC4045] gi|208821447|ref|ZP_03261767.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O157:H7 str. EC4042] gi|209397508|ref|YP_002273489.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O157:H7 str. EC4115] gi|254795972|ref|YP_003080809.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O157:H7 str. TW14359] gi|226705973|sp|B5Z069|TRMA_ECO5E RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|187769134|gb|EDU32978.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O157:H7 str. EC4196] gi|188016809|gb|EDU54931.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O157:H7 str. EC4113] gi|189001468|gb|EDU70454.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O157:H7 str. EC4076] gi|189357216|gb|EDU75635.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O157:H7 str. EC4401] gi|189362699|gb|EDU81118.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O157:H7 str. EC4486] gi|208728379|gb|EDZ77980.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O157:H7 str. EC4206] gi|208735177|gb|EDZ83864.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O157:H7 str. EC4045] gi|208741570|gb|EDZ89252.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O157:H7 str. EC4042] gi|209158908|gb|ACI36341.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O157:H7 str. EC4115] gi|209751946|gb|ACI74280.1| outer membrane vitamin B12 receptor protein BtuB [Escherichia coli] gi|254595372|gb|ACT74733.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O157:H7 str. TW14359] Length = 366 Score = 516 bits (1329), Expect = e-144, Method: Compositional matrix adjust. Identities = 244/361 (67%), Positives = 289/361 (80%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L +QYE QLAEKV RL+ MM F ++FRS HYRMRAEF IWHDGDDLYHI+FD Sbjct: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTK R+R+D F S LIN LM M+A +R P+LR KLFQIDYLT+ S+QA+V+L+YH Sbjct: 66 QQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + LDD WR+ A LRDAL A+ + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E Sbjct: 126 KKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIALDQDYIDERLPVAGKEMIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+ MLEW L TKG +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAANH++NV+I+RM+++EFTQAM REFNRL+ ID+ SY+ +TIFVDPPRSGL Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D T MVQAYP ILYISCNP++LC++L LS TH +ERLALFDQFPYT HMEC VLL Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECSVLLTA 365 Query: 365 K 365 K Sbjct: 366 K 366 >gi|82778852|ref|YP_405201.1| tRNA (uracil-5-)-methyltransferase [Shigella dysenteriae Sd197] gi|309783924|ref|ZP_07678569.1| tRNA (uracil-5-)-methyltransferase [Shigella dysenteriae 1617] gi|123561308|sp|Q32AE5|TRMA_SHIDS RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|81243000|gb|ABB63710.1| tRNA (uracil-5-)-methyltransferase [Shigella dysenteriae Sd197] gi|308928295|gb|EFP73757.1| tRNA (uracil-5-)-methyltransferase [Shigella dysenteriae 1617] Length = 366 Score = 516 bits (1329), Expect = e-144, Method: Compositional matrix adjust. Identities = 244/361 (67%), Positives = 289/361 (80%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L +QYE QLAEKV RL+ MM F ++FRS HYRMRAEF IWHDGDDLYHI+FD Sbjct: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTK R+R+D F S LIN LM M+A +R P+LR KLFQIDYLT+ S+QA+V+L+YH Sbjct: 66 QQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + LDD WR+ A LRDAL A+ + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E Sbjct: 126 KKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIALDQDYIDERLPVAGKEMIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+ MLEW L TKG +GDLLELYCGNGNFSL LA +FDRVLA EIAKPSV Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALAHNFDRVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAANH++NV+I+RM+++EFTQAM REFNRL+ ID+ SY+ +TIFVDPPRSGL Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D T MVQAYP ILYISCNP++LC++L LS TH +ERLALFDQFPYT HMECGVLL Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTA 365 Query: 365 K 365 K Sbjct: 366 K 366 >gi|300916978|ref|ZP_07133676.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 115-1] gi|300415730|gb|EFJ99040.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 115-1] Length = 366 Score = 516 bits (1328), Expect = e-144, Method: Compositional matrix adjust. Identities = 244/361 (67%), Positives = 290/361 (80%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L +QYE QLA+KV RL+ MM F ++FRS HYRMRAEF IWHDGDDLYHI+FD Sbjct: 6 LPTEQYEAQLAKKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTK R+R+D F S LIN LM M+A +R P+LR KLFQIDYLT+ S+QA+V+L+YH Sbjct: 66 QQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + LDD WR+ A LRDAL A+ + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E Sbjct: 126 KKLDDEWRQEAESLRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+ MLEW L TKG +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAANH++NV+I+RM+++EFTQAM REFNRL+ ID+ SY+ +TIFVDPPRSGL Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D T MVQAYP ILYISCNP++LC++L LS TH +ERLALFDQFPYT HMECGVLL Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTA 365 Query: 365 K 365 K Sbjct: 366 K 366 >gi|186972974|pdb|3BT7|A Chain A, Structure Of E. Coli 5-Methyluridine Methyltransferase Trma In Complex With 19 Nucleotide T-Arm Analogue gi|186972975|pdb|3BT7|B Chain B, Structure Of E. Coli 5-Methyluridine Methyltransferase Trma In Complex With 19 Nucleotide T-Arm Analogue Length = 369 Score = 516 bits (1328), Expect = e-144, Method: Compositional matrix adjust. Identities = 244/361 (67%), Positives = 290/361 (80%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L +QYE QLAEKV RL+ MM F ++FRS HYRMRAEF IWHDGDDLYHI+FD Sbjct: 9 LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 68 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTK R+R+D F S LIN LM M+A +R P+LR KLFQIDYLT+ S+QA+V+L+YH Sbjct: 69 QQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYH 128 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + LDD WR+ A LRDAL A+ + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E Sbjct: 129 KKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVE 188 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+ MLEW L TKG +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV Sbjct: 189 NSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 248 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAANH++NV+I+RM+++EFTQAM REFNRL+ ID+ SY+ +TIFVDPPRSGL Sbjct: 249 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 308 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D T MVQAYP ILYISCNP++LC++L LS TH +ERLALFDQFPYT HM+CGVLL Sbjct: 309 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMQCGVLLTA 368 Query: 365 K 365 K Sbjct: 369 K 369 >gi|311281561|ref|YP_003943792.1| tRNA (uracil-5-)-methyltransferase [Enterobacter cloacae SCF1] gi|308750756|gb|ADO50508.1| tRNA (uracil-5-)-methyltransferase [Enterobacter cloacae SCF1] Length = 367 Score = 516 bits (1328), Expect = e-144, Method: Compositional matrix adjust. Identities = 240/361 (66%), Positives = 287/361 (79%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L +QYE QLAEKV RL+ MM F P ++FRS HYRMRAEF +WH+GDDLYHI+FD Sbjct: 6 LPTEQYEAQLAEKVVRLQSMMTPFAAPVPEVFRSPVSHYRMRAEFRLWHEGDDLYHIIFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 Q TK+R+R+D F S LIN LM ++A ++ EP+LR KLFQ+DYLT+ S+QAIV+L+YH Sbjct: 66 QATKQRIRVDSFPAASQLINVLMKAVIAGVKDEPVLRHKLFQVDYLTTMSNQAIVSLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + L D W+ A RLRDAL A +QLIGRA KTKI LDRDY+DERL V GR +IYRQ+E Sbjct: 126 KALGDEWQSAATRLRDALRAANLNVQLIGRATKTKIALDRDYIDERLPVGGREMIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+ MLEW T G GDLLELYCGNGNFSL LAR+F RVLA EIAKPSV Sbjct: 186 NSFTQPNAAMNIQMLEWAQDVTTGATGDLLELYCGNGNFSLALARNFTRVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 +A+YNIAANH++NV+I+RMS++EFTQAM R+FNRL+ ID+ SY+ +TIFVDPPRSGL Sbjct: 246 ASAQYNIAANHIDNVQIIRMSAEEFTQAMNGVRQFNRLQGIDLQSYQCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D T MVQAYP ILYISCNP++LC++L LS TH +ERLALFDQFPYT HMECGVLL R Sbjct: 306 DGETEKMVQAYPRILYISCNPETLCKNLETLSQTHRVERLALFDQFPYTHHMECGVLLTR 365 Query: 365 K 365 K Sbjct: 366 K 366 >gi|307314707|ref|ZP_07594304.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli W] gi|306905762|gb|EFN36288.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli W] gi|315063300|gb|ADT77627.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli W] gi|323380637|gb|ADX52905.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli KO11] Length = 366 Score = 516 bits (1328), Expect = e-144, Method: Compositional matrix adjust. Identities = 244/361 (67%), Positives = 290/361 (80%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L +QYE QLAEKV RL+ MM F ++FRS HYRMRAEF IWHDGDDLYHI+FD Sbjct: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTK R+R+D F S LIN LM M+A +R P+LR KLFQIDYLT+ S+QA+V+L+YH Sbjct: 66 QQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + LDD WR+ A LRDAL A+ + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E Sbjct: 126 KKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+ MLEW L TKG +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAANH++NV+I+RM+++EFTQAM REFNRL+ ID+ SY+ +TIFVDPPRSGL Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D T MVQAYP ILYISCNP++LC++L LS TH +ERLALFDQFPYT H+ECGVLL Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHIECGVLLTA 365 Query: 365 K 365 K Sbjct: 366 K 366 >gi|26250742|ref|NP_756782.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli CFT073] gi|34222850|sp|Q8CXW3|TRMA_ECOL6 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|26111173|gb|AAN83356.1|AE016770_156 tRNA (Uracil-5-)-methyltransferase [Escherichia coli CFT073] Length = 366 Score = 515 bits (1327), Expect = e-144, Method: Compositional matrix adjust. Identities = 243/361 (67%), Positives = 289/361 (80%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L +QYE QLAEKV RL+ MM F ++FRS HYRMRAEF IWHDGDDLYHI+FD Sbjct: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTK R+R+D F S LIN LM M+A +R P+LR KLFQIDYLT+ +QA+V+L+YH Sbjct: 66 QQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPILRHKLFQIDYLTTLRNQAVVSLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + LDD WR+ A LRDAL A+ + LIGRA KTKI LD+DY+DERL +AG+ +IYRQ+E Sbjct: 126 KKLDDEWRQQAEALRDALRAQNLNVHLIGRATKTKIALDQDYIDERLPIAGKEMIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+ MLEW L TKG +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAANH++NV+I+RM+++EFTQAM REFNRL+ ID+ SY+ +TIFVDPPRSGL Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D T MVQAYP ILYISCNP++LC++L LS TH +ERLALFDQFPYT HMECGVLL Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTA 365 Query: 365 K 365 K Sbjct: 366 K 366 >gi|323190169|gb|EFZ75447.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli RN587/1] Length = 366 Score = 515 bits (1327), Expect = e-144, Method: Compositional matrix adjust. Identities = 244/361 (67%), Positives = 290/361 (80%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L +QYE QLAEKV RL+ MM F ++FRS HYRMRAEF IWHDGDDLYHI+FD Sbjct: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTK R+R+D F S LI+ LM M+A +R P+LR KLFQIDYLT+ S+QA+V+L+YH Sbjct: 66 QQTKSRIRVDSFPAASELIDQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + LDD WR+ A LRDAL A+ + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E Sbjct: 126 KKLDDEWRQQAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+ MLEW L TKG +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAANH++NV+I+RM+++EFTQAM REFNRL+ ID+ SY+ +TIFVDPPRSGL Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D T MVQAYP ILYISCNP++LC++L LS TH +ERLALFDQFPYT HMECGVLL Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTA 365 Query: 365 K 365 K Sbjct: 366 K 366 >gi|300986809|ref|ZP_07177799.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 200-1] gi|300306386|gb|EFJ60906.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 200-1] Length = 366 Score = 515 bits (1327), Expect = e-144, Method: Compositional matrix adjust. Identities = 243/361 (67%), Positives = 289/361 (80%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L +QYE QLAEKV RL+ MM F ++FRS HYRMRAEF IWHDGDDLYHI+FD Sbjct: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTK R+R+D S LIN LM M+A +R P+LR KLFQIDYLT+ S+QA+V+L+YH Sbjct: 66 QQTKSRIRVDSSPAASELINQLMTAMIAGVRNNPILRHKLFQIDYLTTLSNQAVVSLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + LDD WR+ A LRDAL A+ + LIGRA KTKI LD+DY+DERL +AG+ +IYRQ+E Sbjct: 126 KKLDDEWRQQAEALRDALRAQNLNVHLIGRATKTKIALDQDYIDERLPIAGKEMIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+ MLEW L TKG +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAANH++NV+I+RM+++EFTQAM REFNRL+ ID+ SY+ +TIFVDPPRSGL Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D T MVQAYP ILYISCNP++LC++L LS TH +ERLALFDQFPYT HMECGVLL Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTA 365 Query: 365 K 365 K Sbjct: 366 K 366 >gi|307128964|ref|YP_003880980.1| tRNA (uracil-5-)-methyltransferase [Dickeya dadantii 3937] gi|306526493|gb|ADM96423.1| tRNA (uracil-5-)-methyltransferase [Dickeya dadantii 3937] Length = 367 Score = 515 bits (1326), Expect = e-144, Method: Compositional matrix adjust. Identities = 241/361 (66%), Positives = 291/361 (80%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L IDQY+ QL EK RL MM F P +FRS HYRMRAEF IWHDGDDLYHI+FD Sbjct: 6 LPIDQYDAQLEEKTGRLGAMMAPFDAPAPTVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTK+R+R+D F S LIN LM +++ +R EP+LR KLFQIDYL++ S + +V+L+YH Sbjct: 66 QQTKQRIRVDRFPAASELINRLMPALISALRAEPVLRRKLFQIDYLSTLSGEIVVSLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + LDD W++CA LRD LHA+ + +QLIGRA KTKICLDRDYVDE L VAGR +IYRQ+E Sbjct: 126 KALDDEWQQCARLLRDQLHAQGFALQLIGRATKTKICLDRDYVDECLPVAGRQMIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+ MLEW L+AT+G GDLLELYCGNGNFSL LAR+F+RVLA EIAKPSV Sbjct: 186 NSFTQPNAMMNIQMLEWALSATQGSTGDLLELYCGNGNFSLALARNFERVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAAN ++NV+I+RM+++EFTQAM R+FNRL+ ID+ YR +TIFVDPPRSGL Sbjct: 246 AAAQYNIAANQIDNVQIIRMAAEEFTQAMNGVRQFNRLQGIDLAGYRCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 DD TV +VQAYP ILYISCNP++LC +L LS TH I +LALFDQFPYT HMECGVLL + Sbjct: 306 DDDTVKLVQAYPRILYISCNPETLCANLETLSQTHRISQLALFDQFPYTHHMECGVLLEK 365 Query: 365 K 365 + Sbjct: 366 R 366 >gi|300937124|ref|ZP_07151982.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 21-1] gi|300457798|gb|EFK21291.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 21-1] Length = 366 Score = 514 bits (1325), Expect = e-144, Method: Compositional matrix adjust. Identities = 244/361 (67%), Positives = 290/361 (80%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L +QYE QLAEKV RL+ MM F ++FRS HYRMRAEF IWHDGDDLYHI+FD Sbjct: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTK R+R+D F S LIN LM M+A +R P+LR KLFQIDYLT+ S+QA+V+L+YH Sbjct: 66 QQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + LDD WR+ A LRDAL A+ + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E Sbjct: 126 KKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+ MLEW L TKG +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAANH++NV+I+RM+++EFTQAM REF+RL+ ID+ SY+ +TIFVDPPRSGL Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFHRLQGIDLKSYQCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D T MVQAYP ILYISCNP++LC++L LS TH +ERLALFDQFPYT HMECGVLL Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTA 365 Query: 365 K 365 K Sbjct: 366 K 366 >gi|218551042|ref|YP_002384833.1| tRNA (uracil-5-)-methyltransferase [Escherichia fergusonii ATCC 35469] gi|226705981|sp|B7LUM8|TRMA_ESCF3 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|218358583|emb|CAQ91231.1| tRNA (uracil-5-)-methyltransferase [Escherichia fergusonii ATCC 35469] gi|325499293|gb|EGC97152.1| tRNA (uracil-5-)-methyltransferase [Escherichia fergusonii ECD227] Length = 366 Score = 514 bits (1325), Expect = e-144, Method: Compositional matrix adjust. Identities = 245/361 (67%), Positives = 289/361 (80%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L +QYE QLAEKV RL+ MM F ++FRS HYRMRAEF IWHDGDDLYHI+FD Sbjct: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTK R+R+D F S LIN LM M+A +R P+LR KLFQIDYLT+ S+QA+V+L+YH Sbjct: 66 QQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + LDD WR+ A LRDAL A+ + LIGRA KTKI LD+DY+DERL VAGR +IYRQ+E Sbjct: 126 KKLDDEWRQQAEVLRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGREMIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+ MLEW L TK +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKDSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAANH++NV+I+RM+++EFTQAM REFNRL+ ID+ SY+ +TIFVDPPRSGL Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D T MVQAYP ILYISCNP++LC++L LS TH +ERLALFDQFPYT HMECGVLL Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTA 365 Query: 365 K 365 K Sbjct: 366 K 366 >gi|281181038|dbj|BAI57368.1| tRNA (uracil-5)-methyltransferase [Escherichia coli SE15] Length = 366 Score = 514 bits (1325), Expect = e-144, Method: Compositional matrix adjust. Identities = 243/361 (67%), Positives = 289/361 (80%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L +QYE QLAEKV RL+ MM F ++FRS HYRMRAEF IWHDGDDLYHI+FD Sbjct: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTK R+R+D F S LIN LM M+A +R P+LR KLFQIDYLT+ S+QA+V+L+YH Sbjct: 66 QQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPILRHKLFQIDYLTTLSNQAVVSLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + LDD W + A LRDAL A+ + LIGRA KTKI LD+DY+DERL +AG+ +IYRQ+E Sbjct: 126 KKLDDEWCQQAEALRDALRAQNLNVHLIGRATKTKIALDQDYIDERLPIAGKEMIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+ MLEW L TKG +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAANH++NV+I+RM+++EFTQAM REFNRL+ ID+ SY+ +TIFVDPPRSGL Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D T MVQAYP ILYISCNP++LC++L LS TH +ERLALFDQFPYT HMECGVLL Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTA 365 Query: 365 K 365 K Sbjct: 366 K 366 >gi|331649822|ref|ZP_08350902.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli M605] gi|330908290|gb|EGH36809.1| tRNA (Uracil54-C5-)-methyltransferase [Escherichia coli AA86] gi|331041455|gb|EGI13605.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli M605] Length = 366 Score = 514 bits (1323), Expect = e-143, Method: Compositional matrix adjust. Identities = 243/361 (67%), Positives = 289/361 (80%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L +QYE QLAEKV RL+ MM F ++FRS HYRMRAEF IWHDGDDLYHI+FD Sbjct: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTK R+R+D F S LIN LM M+A +R P+LR KLFQIDYLT+ S+QA+V+L+YH Sbjct: 66 QQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPILRHKLFQIDYLTTLSNQAVVSLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + LDD W + A LRDAL A+ + LIGRA KTKI LD+DY+DERL +AG+ +IYRQ+E Sbjct: 126 KKLDDDWCQQAEALRDALRAQNLNVHLIGRATKTKIALDQDYIDERLPIAGKEMIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+ MLEW L TKG +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAANH++NV+I+RM+++EFTQAM REFNRL+ ID+ SY+ +TIFVDPPRSGL Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D T MVQAYP ILYISCNP++LC++L LS TH +ERLALFDQFPYT HMECGVLL Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTA 365 Query: 365 K 365 K Sbjct: 366 K 366 >gi|324111410|gb|EGC05391.1| tRNA (uracil-5-)-methyltransferase [Escherichia fergusonii B253] Length = 366 Score = 514 bits (1323), Expect = e-143, Method: Compositional matrix adjust. Identities = 245/361 (67%), Positives = 288/361 (79%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L +QYE QLAEKV RL+ MM F ++FRS HYRMRAEF IWHDGDDLYHI+FD Sbjct: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTK R+R+D F S LIN LM M+A +R P+LR KLFQIDYLT+ S+QA+V+L+YH Sbjct: 66 QQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + LDD WR+ A LRDAL A+ + LIGRA KTKI LD+DY+DERL VAGR +IYRQ+E Sbjct: 126 KKLDDEWRQQAEVLRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGREMIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+ MLEW L TK +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKDSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAANH++NV+I+RM+++EFTQAM REFNRL+ ID+ SY+ +TIFVDPPRSGL Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D T MVQAYP ILYISCNP +LC++L LS TH +ERLALFDQFPYT HMECGVLL Sbjct: 306 DSETEKMVQAYPRILYISCNPKTLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTA 365 Query: 365 K 365 K Sbjct: 366 K 366 >gi|227113201|ref|ZP_03826857.1| tRNA (uracil-5-)-methyltransferase [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 367 Score = 513 bits (1322), Expect = e-143, Method: Compositional matrix adjust. Identities = 245/361 (67%), Positives = 292/361 (80%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L I+QY+ QLAEK +RLR MM F P +FRS HYRMRAEF IWHDGD+LYHIMFD Sbjct: 6 LPIEQYDDQLAEKTERLRGMMAPFNAPEPVVFRSPVSHYRMRAEFRIWHDGDELYHIMFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTK+R+R+D F S LIN LM E++A I+ + +LR KLFQIDYL++ S + IV+L+YH Sbjct: 66 QQTKQRIRVDRFPAASELINRLMPELLAAIQPDSVLRRKLFQIDYLSTLSGEVIVSLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 R LD+ W+E A LRD+L A+ +++QLIGRA KTKICLDRDYVDE L VAGR +IYRQ+E Sbjct: 126 RALDEEWQEHARALRDSLTAQGFRLQLIGRATKTKICLDRDYVDECLPVAGRDMIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA IN+ MLEW L AT G GDLLELYCGNGNFSL LAR+F+RVLA EIAKPSV Sbjct: 186 NSFTQPNAAINIQMLEWALDATAGSTGDLLELYCGNGNFSLALARNFERVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAAN + NV+I+RM+++EFTQAM+ R+FNRLK ID+ SY+ +TIFVDPPRSGL Sbjct: 246 AAAQYNIAANQIENVQIIRMAAEEFTQAMQGVRQFNRLKGIDLTSYQCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 DD TV +VQAYP ILYISCNP++L +L LS TH I RLALFDQFPYT HMECGVLL R Sbjct: 306 DDETVKLVQAYPRILYISCNPETLSNNLQTLSETHDIRRLALFDQFPYTHHMECGVLLER 365 Query: 365 K 365 + Sbjct: 366 R 366 >gi|50123159|ref|YP_052326.1| tRNA (uracil-5-)-methyltransferase [Pectobacterium atrosepticum SCRI1043] gi|115305868|sp|Q6CZB4|TRMA_ERWCT RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|49613685|emb|CAG77136.1| tRNA (uracil-5)-methyltransferase [Pectobacterium atrosepticum SCRI1043] Length = 367 Score = 513 bits (1321), Expect = e-143, Method: Compositional matrix adjust. Identities = 242/361 (67%), Positives = 292/361 (80%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L I+ Y+ QLAEK +RLR MM F P +FRS HYRMRAEF IWHDGD+LYHIMFD Sbjct: 6 LPIEDYDDQLAEKTERLRGMMAPFNAPEPAVFRSPVSHYRMRAEFRIWHDGDELYHIMFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTK+R+R+D F S LIN LM EM+A I+ +P+LR KLFQIDYL++ S + IV+L+YH Sbjct: 66 QQTKQRIRVDRFPAASELINRLMPEMLAAIQPDPVLRRKLFQIDYLSTLSGEVIVSLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 R L++ W+E A LRD+L A+ + +QLIGRA KTKICLDRDYVDE L VAGR +IYRQ+E Sbjct: 126 RALNEEWQEHARALRDSLTAQGFNLQLIGRATKTKICLDRDYVDECLPVAGRNMIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+ MLEW L AT G +GDLLELYCGNGNFSL LAR+F+RVLA EIAKPSV Sbjct: 186 NSFTQPNAAVNIQMLEWALDATAGSKGDLLELYCGNGNFSLALARNFERVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAAN + NV+I+RM+++EFTQAM+ R+FNRL+ ID+ SY+ +TIFVDPPRSGL Sbjct: 246 AAAQYNIAANQIENVQIIRMAAEEFTQAMQGVRQFNRLQGIDLTSYQCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 DD TV +VQAYP ILYISCNP++L +L LS TH I RLALFDQFPYT HMECGVLL + Sbjct: 306 DDETVKLVQAYPRILYISCNPETLSNNLKTLSETHDIRRLALFDQFPYTHHMECGVLLEK 365 Query: 365 K 365 + Sbjct: 366 R 366 >gi|218701325|ref|YP_002408954.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli IAI39] gi|226705974|sp|B7NU35|TRMA_ECO7I RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|218371311|emb|CAR19143.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli IAI39] Length = 366 Score = 513 bits (1321), Expect = e-143, Method: Compositional matrix adjust. Identities = 243/361 (67%), Positives = 290/361 (80%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L +QYE QLAEKV RL+ MM F ++FRS HYRMRAEF IWHDGDDLYHI+FD Sbjct: 6 LPTEQYEAQLAEKVVRLQSMMAPFSNLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTK R+R+D F S LIN LM M+A +R P+LR KLFQIDYLT+ S+QA+V+L+YH Sbjct: 66 QQTKSRIRVDSFPAASELINQLMSAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + L+D WR+ A LRDAL A+ + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E Sbjct: 126 KKLNDEWRQQAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+ MLEW L TKG +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAANH++NV+I+RM+++EFTQAM REF+RL+ ID+ SY+ +TIFVDPPRSGL Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFHRLQGIDLKSYQCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D T MVQAYP ILYISCNP++LC++L LS TH +ERLALFDQFPYT HMECGVLL Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTA 365 Query: 365 K 365 K Sbjct: 366 K 366 >gi|332998875|gb|EGK18469.1| tRNA (uracil-5-)-methyltransferase [Shigella flexneri K-218] Length = 362 Score = 513 bits (1321), Expect = e-143, Method: Compositional matrix adjust. Identities = 243/361 (67%), Positives = 289/361 (80%), Gaps = 4/361 (1%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L +QYE QLAEKV RL+ MM F ++FRS HYRMRAEF IWHDGDDLYHI+FD Sbjct: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTK R+R+D F S LIN LM M+A +R P+LR KLFQIDYLT+ S+QA+V+L+YH Sbjct: 66 QQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + LDD WR+ A +AL A+ + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E Sbjct: 126 KKLDDEWRQEA----EALRAQNLNVHLIGRATKTKIALDQDYIDERLPVAGKEMIYRQVE 181 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+ MLEW L TKG +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV Sbjct: 182 NSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 241 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAANH++NV+I+RM+++EFTQAM REFNRL+ ID+ SY+F+TIFVDPPRSGL Sbjct: 242 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQFETIFVDPPRSGL 301 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D T MVQAYP ILYISCNP++LC++L LS TH +ERLALFDQFPYT HMECGVLL Sbjct: 302 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTA 361 Query: 365 K 365 K Sbjct: 362 K 362 >gi|300948246|ref|ZP_07162365.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 116-1] gi|300452224|gb|EFK15844.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 116-1] Length = 360 Score = 511 bits (1315), Expect = e-143, Method: Compositional matrix adjust. Identities = 241/355 (67%), Positives = 286/355 (80%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L +QYE QLAEKV RL+ MM F ++FRS HYRMRAEF IWHDGDDLYHI+FD Sbjct: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTK R+R+D F S LIN LM M+A +R P+LR KLFQIDYLT+ S+QA+V+L+YH Sbjct: 66 QQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + LDD WR+ A LRDAL A+ + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E Sbjct: 126 KKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+ MLEW L TKG +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAANH++NV+I+RM+++EFTQAM REFNRL+ ID+ SY+ +TIFVDPPRSGL Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359 D T MVQAYP ILYISCNP++LC++L LS TH +ERLALFDQFPYT HMECG Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECG 360 >gi|283787354|ref|YP_003367219.1| tRNA (uracil-5)-methyltransferase [Citrobacter rodentium ICC168] gi|282950808|emb|CBG90484.1| tRNA (uracil-5)-methyltransferase [Citrobacter rodentium ICC168] Length = 366 Score = 510 bits (1313), Expect = e-142, Method: Compositional matrix adjust. Identities = 242/361 (67%), Positives = 287/361 (79%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L +QY+ QLAEKV RL+ MM F ++FRS HYRMRAEF IWHDGDDLYHI+FD Sbjct: 6 LPTEQYDAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTK R+R+D F S LIN LM M+A +R P+LR KLFQIDYLT+ S+QA+V+L+YH Sbjct: 66 QQTKSRIRVDSFPAASELINQLMSAMIAGVRNNPVLRQKLFQIDYLTTMSNQAVVSLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + LD+AWR+ A LRDAL A+ + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E Sbjct: 126 KKLDEAWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+ MLEW L T+G +GDLLELYCGNGNFSL LAR+FD VLA EIAKPSV Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTRGSKGDLLELYCGNGNFSLALARNFDHVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAAN + NV+I+RM+++EFTQAM REFNRLK +D+ SY+ +TIFVDPPRSGL Sbjct: 246 AAAQYNIAANGIENVQIIRMAAEEFTQAMNGVREFNRLKGVDLKSYQCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D T MVQAYP ILYISCNP +LC++L LS TH IERLALFDQFPYT HMECGVLL Sbjct: 306 DSETEKMVQAYPRILYISCNPQTLCKNLETLSQTHKIERLALFDQFPYTHHMECGVLLTA 365 Query: 365 K 365 K Sbjct: 366 K 366 >gi|291619388|ref|YP_003522130.1| TrmA [Pantoea ananatis LMG 20103] gi|291154418|gb|ADD79002.1| TrmA [Pantoea ananatis LMG 20103] gi|327395711|dbj|BAK13133.1| tRNA (uracil-5-)-methyltransferase TrmA [Pantoea ananatis AJ13355] Length = 367 Score = 509 bits (1312), Expect = e-142, Method: Compositional matrix adjust. Identities = 240/361 (66%), Positives = 287/361 (79%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L ++QY+ QLAEKV RL MM F P +++FRS HYRMRAEF IWH+GDDLYHI+FD Sbjct: 6 LPVEQYDAQLAEKVSRLETMMTPFAAPAVEVFRSPVSHYRMRAEFRIWHEGDDLYHIIFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 Q+TK+R+R+D F S LIN +M +MMA IR LLR KLFQIDYL++ S Q +++L+YH Sbjct: 66 QETKQRIRVDQFPAASELINQVMPKMMAAIRDNRLLRHKLFQIDYLSTMSHQIVISLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 R LD+ W++ A LRD L A +QLIGRA KTKICLDRDYVDERL VAG+ +IYRQ+E Sbjct: 126 RKLDEEWQQAASTLRDQLRAEGIDVQLIGRATKTKICLDRDYVDERLPVAGKEMIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+ MLEW L T G +GDLLELYCGNGNFSL LAR+F RVLA EIAKPSV Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTTGSRGDLLELYCGNGNFSLALARNFRRVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 +A+YNIAAN V+NV+I+RM+++EFTQAM R FNRL+ ID+ SY +TIFVDPPRSGL Sbjct: 246 ASAQYNIAANQVDNVQIIRMAAEEFTQAMNGVRSFNRLEGIDLKSYDCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D+ TV MVQAYP ILYISCNP +LC +L IL+ TH + RLALFDQFPYT HMECGVLL R Sbjct: 306 DEETVKMVQAYPAILYISCNPQTLCDNLRILAQTHDVTRLALFDQFPYTHHMECGVLLTR 365 Query: 365 K 365 K Sbjct: 366 K 366 >gi|168237752|ref|ZP_02662810.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194737076|ref|YP_002117041.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197249955|ref|YP_002149050.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|226705985|sp|B5F0V3|TRMA_SALA4 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|226705992|sp|B4TQI0|TRMA_SALSV RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|194712578|gb|ACF91799.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197213658|gb|ACH51055.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197289385|gb|EDY28750.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] Length = 366 Score = 509 bits (1312), Expect = e-142, Method: Compositional matrix adjust. Identities = 241/361 (66%), Positives = 286/361 (79%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L +QYE QLAEKV RL+ MM F ++FRS HYRMRAEF +WHDGDDLYHIMFD Sbjct: 6 LPTEQYEAQLAEKVARLQSMMAPFSGLVPEVFRSPVSHYRMRAEFRLWHDGDDLYHIMFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTK R+R+D F S LIN LM M+A +R LR KLFQIDYLT+ S+QA+V+L+YH Sbjct: 66 QQTKSRIRVDTFPAASQLINTLMKAMIAGVRDNHALRHKLFQIDYLTTLSNQAVVSLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + LD+ WRE A LRDAL A+ + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E Sbjct: 126 KKLDEEWREAATALRDALRAQGLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+ MLEW L TK +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV Sbjct: 186 NSFTQPNAAMNIQMLEWALEVTKDSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAANH++NV+I+RM+++EFTQAM REFNRL+ ID+ Y+ +TIFVDPPRSGL Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKRYQCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D T MVQAYP ILYISCNP++LC++L LS THT+ RLALFDQFPYT HMECGVLL Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHTVSRLALFDQFPYTHHMECGVLLTA 365 Query: 365 K 365 + Sbjct: 366 R 366 >gi|322613117|gb|EFY10061.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322619255|gb|EFY16138.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322626121|gb|EFY22933.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322626419|gb|EFY23225.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322632467|gb|EFY29215.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322635050|gb|EFY31771.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322642747|gb|EFY39337.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322646428|gb|EFY42939.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322648557|gb|EFY45007.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322654818|gb|EFY51136.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322657285|gb|EFY53565.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322662228|gb|EFY58443.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322669771|gb|EFY65915.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322672034|gb|EFY68149.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322675755|gb|EFY71827.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322681829|gb|EFY77855.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322683976|gb|EFY79985.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323193247|gb|EFZ78462.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323197605|gb|EFZ82738.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323202191|gb|EFZ87246.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323207174|gb|EFZ92126.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323211376|gb|EFZ96217.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323218579|gb|EGA03287.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323220939|gb|EGA05371.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323226064|gb|EGA10282.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323231595|gb|EGA15707.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323236903|gb|EGA20974.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323239423|gb|EGA23472.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323243984|gb|EGA27995.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323249347|gb|EGA33264.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323250410|gb|EGA34293.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323258864|gb|EGA42516.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323260888|gb|EGA44488.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323265228|gb|EGA48725.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323270450|gb|EGA53896.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 366 Score = 509 bits (1311), Expect = e-142, Method: Compositional matrix adjust. Identities = 241/361 (66%), Positives = 286/361 (79%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L +QYE QLAEKV RL+ MM F ++FRS HYRMRAEF +WHDGDDLYHIMFD Sbjct: 6 LPTEQYEAQLAEKVARLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRLWHDGDDLYHIMFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTK R+R+D F S LIN LM M+A +R LR KLFQIDYLT+ S+QA+V+L+YH Sbjct: 66 QQTKSRIRVDTFPAASQLINTLMKAMIAGVRDNHALRHKLFQIDYLTTLSNQAVVSLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + LD+ WRE A LRDAL A+ + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E Sbjct: 126 KKLDEEWREAATALRDALRAQGLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+ MLEW L TK +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV Sbjct: 186 NSFTQPNAAMNIQMLEWALEVTKDSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAANH++NV+I+RM+++EFTQAM REFNRL+ ID+ Y+ +TIFVDPPRSGL Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKRYQCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D T MVQAYP ILYISCNP++LC++L LS THT+ RLALFDQFPYT HMECGVLL Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHTVSRLALFDQFPYTHHMECGVLLTA 365 Query: 365 K 365 + Sbjct: 366 R 366 >gi|227329571|ref|ZP_03833595.1| tRNA (uracil-5-)-methyltransferase [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 367 Score = 509 bits (1311), Expect = e-142, Method: Compositional matrix adjust. Identities = 242/361 (67%), Positives = 292/361 (80%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L I+QY+ QLAEK +RLR MM F P +FRS HYRMRAEF IWH+GD+LYHIMFD Sbjct: 6 LPIEQYDDQLAEKTERLRGMMAPFNAPEPVVFRSPVSHYRMRAEFRIWHEGDELYHIMFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTK+R+R+D F S LIN LM E++A I+ + +LR KLFQIDYL++ S + IV+L+YH Sbjct: 66 QQTKQRIRVDRFPAASELINRLMPELLAAIQPDSVLRRKLFQIDYLSTLSGEVIVSLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 R LD+ W+E A LRD+L A+ +++QLIGRA KTKICLDRDYVDE L VAGR +IYRQ+E Sbjct: 126 RALDEEWQEHARALRDSLTAQGFRLQLIGRATKTKICLDRDYVDECLPVAGRDMIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA IN+ MLEW L AT G GDLLELYCGNGNFSL LAR+F+RVLA EIAKPSV Sbjct: 186 NSFTQPNAAINIQMLEWALDATAGSTGDLLELYCGNGNFSLALARNFERVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAAN + NV+I+RM+++EFTQAM+ R+FNRL+ ID+ SY+ +TIFVDPPRSGL Sbjct: 246 AAAQYNIAANQIENVQIIRMAAEEFTQAMQGVRQFNRLQGIDLTSYQCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 DD TV +VQAYP ILYISCNP++L +L LS TH I RLALFDQFPYT HMECGVLL + Sbjct: 306 DDETVKLVQAYPRILYISCNPETLSNNLQTLSETHDIRRLALFDQFPYTHHMECGVLLEK 365 Query: 365 K 365 + Sbjct: 366 R 366 >gi|168262959|ref|ZP_02684932.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|238912269|ref|ZP_04656106.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|205348285|gb|EDZ34916.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] Length = 366 Score = 509 bits (1310), Expect = e-142, Method: Compositional matrix adjust. Identities = 240/361 (66%), Positives = 286/361 (79%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L +QYE QLAEKV RL+ MM F ++FRS HYRMRAEF +WHDGDDLYHIMFD Sbjct: 6 LPTEQYEAQLAEKVARLQSMMAPFSGLVPEVFRSPVSHYRMRAEFRLWHDGDDLYHIMFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTK R+R+D F S LIN LM M+A +R LR KLFQIDYLT+ S+QA+V+L+YH Sbjct: 66 QQTKSRIRVDTFPAASQLINTLMKAMIAGVRDNHALRHKLFQIDYLTTLSNQAVVSLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + LD+ WRE A LRDAL A+ + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E Sbjct: 126 KKLDEEWREAATALRDALRAQGLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+ MLEW L TK +GDLLELYCGNGNFSL LAR+F+RVLA EIAKPSV Sbjct: 186 NSFTQPNAAMNIQMLEWALEVTKDSKGDLLELYCGNGNFSLALARNFNRVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAANH++NV+I+RM+++EFTQAM REFNRL+ ID+ Y+ +TIFVDPPRSGL Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKGYQCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D T MVQAYP ILYISCNP++LC++L LS THT+ RLALFDQFPYT HMECGVLL Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHTVSRLALFDQFPYTHHMECGVLLTA 365 Query: 365 K 365 + Sbjct: 366 R 366 >gi|253686597|ref|YP_003015787.1| tRNA (uracil-5-)-methyltransferase [Pectobacterium carotovorum subsp. carotovorum PC1] gi|259547828|sp|C6DHQ1|TRMA_PECCP RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|251753175|gb|ACT11251.1| tRNA (uracil-5-)-methyltransferase [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 367 Score = 509 bits (1310), Expect = e-142, Method: Compositional matrix adjust. Identities = 242/361 (67%), Positives = 292/361 (80%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L I+QY+ QLAEK +RLR MM F P +FRS HYRMRAEF IWH+GD+LYHIMFD Sbjct: 6 LPIEQYDDQLAEKTERLRGMMAPFNAPEPVVFRSPVSHYRMRAEFRIWHEGDELYHIMFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTK+R+R+D F S LIN LM E++A I+ + +LR KLFQIDYL++ S + IV+L+YH Sbjct: 66 QQTKQRIRVDRFPAASELINRLMPELLAAIQPDSVLRRKLFQIDYLSTLSGEVIVSLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 R LD+ W+E A LRD+L A+ +++QLIGRA KTKICLDRDYVDE L VAGR +IYRQ+E Sbjct: 126 RALDEEWQEHARALRDSLTAQGFRLQLIGRATKTKICLDRDYVDECLPVAGRDMIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA IN+ MLEW L AT G GDLLELYCGNGNFSL LAR+F+RVLA EIAKPSV Sbjct: 186 NSFTQPNAAINIQMLEWALDATAGSTGDLLELYCGNGNFSLALARNFERVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAAN + NV+I+RM+++EFTQAM+ R+FNRL+ ID+ SY+ +TIFVDPPRSGL Sbjct: 246 AAAQYNIAANQIENVQIIRMAAEEFTQAMQGVRQFNRLQGIDLTSYQCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 DD TV +VQAYP ILYISCNP++L +L LS TH I RLALFDQFPYT HMECGVLL + Sbjct: 306 DDETVKLVQAYPRILYISCNPETLSHNLQTLSETHDIRRLALFDQFPYTHHMECGVLLEK 365 Query: 365 K 365 + Sbjct: 366 R 366 >gi|161617272|ref|YP_001591237.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|189036044|sp|A9N0H5|TRMA_SALPB RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|161366636|gb|ABX70404.1| hypothetical protein SPAB_05114 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] Length = 366 Score = 508 bits (1309), Expect = e-142, Method: Compositional matrix adjust. Identities = 240/361 (66%), Positives = 286/361 (79%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L +QYE QLAEKV RL+ MM F ++FRS HYRMRAEF +WHDGDDLYHIMFD Sbjct: 6 LPTEQYEAQLAEKVSRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRLWHDGDDLYHIMFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTK R+R+D F S LIN LM M+A +R LR KLFQIDYLT+ S+QA+V+L+YH Sbjct: 66 QQTKSRIRVDTFPAASQLINTLMKAMIAGVRDNHALRHKLFQIDYLTTLSNQAVVSLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + LD+ WRE A LRDAL A+ + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E Sbjct: 126 KKLDEEWREAATALRDALRAQGLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+ MLEW L TK +GDLLELYCGNGNFSL LAR+F+RVLA EIAKPSV Sbjct: 186 NSFTQPNAAMNIQMLEWALEVTKDSKGDLLELYCGNGNFSLALARNFNRVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAANH++NV+I+RM+++EFTQAM REFNRL+ ID+ Y+ +TIFVDPPRSGL Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKRYQCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D T MVQAYP ILYISCNP++LC++L LS THT+ RLALFDQFPYT HMECGVLL Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHTVSRLALFDQFPYTHHMECGVLLTA 365 Query: 365 K 365 + Sbjct: 366 R 366 >gi|168467481|ref|ZP_02701318.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|200388499|ref|ZP_03215111.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|195630197|gb|EDX48837.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|199605597|gb|EDZ04142.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Virchow str. SL491] Length = 366 Score = 508 bits (1308), Expect = e-142, Method: Compositional matrix adjust. Identities = 240/361 (66%), Positives = 286/361 (79%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L +QYE QLAEKV RL+ MM F ++FRS HYRMRAEF +WHDGDDLYHIMFD Sbjct: 6 LPTEQYEAQLAEKVARLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRLWHDGDDLYHIMFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTK R+R+D F S LIN LM M+A +R LR KLFQIDYLT+ S+QA+V+L+YH Sbjct: 66 QQTKSRIRVDTFPAASQLINTLMKAMIAGVRDNHALRHKLFQIDYLTTLSNQAVVSLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + LD+ WRE A LRDAL A+ + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E Sbjct: 126 KKLDEEWREAATALRDALRAQGLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+ MLEW L TK +GDLLELYCGNGNFSL LAR+F+RVLA EIAKPSV Sbjct: 186 NSFTQPNAAMNIQMLEWALEVTKDSKGDLLELYCGNGNFSLALARNFNRVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAANH++NV+I+RM+++EFTQAM REFNRL+ ID+ Y+ +TIFVDPPRSGL Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKGYQCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D T MVQAYP ILYISCNP++LC++L LS THT+ RLALFDQFPYT HMECGVLL Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHTVSRLALFDQFPYTHHMECGVLLTA 365 Query: 365 K 365 + Sbjct: 366 R 366 >gi|16767393|ref|NP_463008.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|62182588|ref|YP_219005.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|167991710|ref|ZP_02572809.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168233071|ref|ZP_02658129.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168821519|ref|ZP_02833519.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194469976|ref|ZP_03075960.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|197261617|ref|ZP_03161691.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|198243648|ref|YP_002218056.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205354295|ref|YP_002228096.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207859318|ref|YP_002245969.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|17865778|sp|P22038|TRMA_SALTY RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|75479266|sp|Q57H88|TRMA_SALCH RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|226705986|sp|B5FPX9|TRMA_SALDC RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|226705987|sp|B5QXR0|TRMA_SALEP RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|226705988|sp|B5REZ3|TRMA_SALG2 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|16422696|gb|AAL22967.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|62130221|gb|AAX67924.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|194456340|gb|EDX45179.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|197239872|gb|EDY22492.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197938164|gb|ACH75497.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205274076|emb|CAR39083.1| tRNA (uracil-5)-methyltransferase [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205330014|gb|EDZ16778.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205332855|gb|EDZ19619.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205341900|gb|EDZ28664.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|206711121|emb|CAR35495.1| tRNA (uracil-5)-methyltransferase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|261249244|emb|CBG27106.1| tRNA (uracil-5)-methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267996435|gb|ACY91320.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301160635|emb|CBW20166.1| tRNA (uracil-5)-methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312915245|dbj|BAJ39219.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320088533|emb|CBY98292.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321225421|gb|EFX50479.1| tRNA Uracil54-C5--methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322717089|gb|EFZ08660.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323132474|gb|ADX19904.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|326625849|gb|EGE32194.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326629419|gb|EGE35762.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] gi|332990957|gb|AEF09940.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 366 Score = 508 bits (1308), Expect = e-142, Method: Compositional matrix adjust. Identities = 240/361 (66%), Positives = 286/361 (79%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L +QYE QLAEKV RL+ MM F ++FRS HYRMRAEF +WHDGDDLYHIMFD Sbjct: 6 LPTEQYEAQLAEKVARLQSMMAPFSGLVPEVFRSPVSHYRMRAEFRLWHDGDDLYHIMFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTK R+R+D F S LIN LM M+A +R LR KLFQIDYLT+ S+QA+V+L+YH Sbjct: 66 QQTKSRIRVDTFPAASQLINTLMKAMIAGVRDNHALRHKLFQIDYLTTLSNQAVVSLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + LD+ WRE A LRDAL A+ + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E Sbjct: 126 KKLDEEWREAATALRDALRAQGLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+ MLEW L TK +GDLLELYCGNGNFSL LAR+F+RVLA EIAKPSV Sbjct: 186 NSFTQPNAAMNIQMLEWALEVTKDSKGDLLELYCGNGNFSLALARNFNRVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAANH++NV+I+RM+++EFTQAM REFNRL+ ID+ Y+ +TIFVDPPRSGL Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKRYQCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D T MVQAYP ILYISCNP++LC++L LS THT+ RLALFDQFPYT HMECGVLL Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHTVSRLALFDQFPYTHHMECGVLLTA 365 Query: 365 K 365 + Sbjct: 366 R 366 >gi|161505380|ref|YP_001572492.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|189036043|sp|A9MHG7|TRMA_SALAR RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|160866727|gb|ABX23350.1| hypothetical protein SARI_03534 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 366 Score = 508 bits (1308), Expect = e-142, Method: Compositional matrix adjust. Identities = 240/361 (66%), Positives = 286/361 (79%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L +QY+ QLAEKV RL+ MM F ++FRS HYRMRAEF +WHDGDDLYHIMFD Sbjct: 6 LPTEQYDAQLAEKVARLQSMMAPFSGLVPEVFRSPASHYRMRAEFRLWHDGDDLYHIMFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTK R+R+D F S LIN LM M+A +R LR KLFQIDYLT+ S+QA+V+L+YH Sbjct: 66 QQTKSRIRVDSFPAASQLINTLMKAMIAGVRDNHALRHKLFQIDYLTTLSNQAVVSLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + LD+ WRE A LRDAL A+ + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E Sbjct: 126 KKLDEEWREAATALRDALRAQGLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+ MLEW L TK +GDLLELYCGNGNFSL LAR+F+RVLA EIAKPSV Sbjct: 186 NSFTQPNAAMNIQMLEWALEVTKDSKGDLLELYCGNGNFSLALARNFNRVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAANH++NV+I+RM+++EFTQAM REFNRL+ ID+ Y+ +TIFVDPPRSGL Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKRYQCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D T MVQAYP ILYISCNP++LC++L LS THT+ RLALFDQFPYT HMECGVLL Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHTVSRLALFDQFPYTHHMECGVLLTA 365 Query: 365 K 365 K Sbjct: 366 K 366 >gi|238794888|ref|ZP_04638487.1| tRNA (uracil-5-)-methyltransferase [Yersinia intermedia ATCC 29909] gi|238725763|gb|EEQ17318.1| tRNA (uracil-5-)-methyltransferase [Yersinia intermedia ATCC 29909] Length = 367 Score = 508 bits (1308), Expect = e-142, Method: Compositional matrix adjust. Identities = 240/361 (66%), Positives = 285/361 (78%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L D Y+QQLAEK RL+ MM FQ P +IFRS HYRMRAEF +WHD DDLYHIMFD Sbjct: 6 LPTDSYDQQLAEKSARLQAMMSPFQAPAAEIFRSPAEHYRMRAEFRVWHDEDDLYHIMFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTK+R+R++ F SLLIN LM +M IR EP+LR KLFQIDYL++ S + I +L+YH Sbjct: 66 QQTKQRIRVEQFPVASLLINRLMSALMTAIRAEPILRRKLFQIDYLSTLSGKLIASLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 R LD+ W++ A+ LRD L A+ + +QLIGRA KTKI LD DY+DE L VAGR +IYRQ+E Sbjct: 126 RQLDEEWQQKALELRDQLRAQGFDLQLIGRAAKTKIMLDHDYIDEVLPVAGREMIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+HMLEW + TK GDLLELYCGNGNFSL LAR+F RVLA EIAKPSV Sbjct: 186 NSFTQPNAAVNIHMLEWAIDTTKNASGDLLELYCGNGNFSLALARNFARVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAAN+++NV+I+RMS++EFTQAM REFNRLK ID+ SY +TIFVDPPRSGL Sbjct: 246 AAAQYNIAANNIDNVQIIRMSAEEFTQAMLGVREFNRLKGIDLSSYNCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 DD TV +VQ YP ILYISCNP++LC +L L TH I RLALFDQFPYT HMECGVLL + Sbjct: 306 DDETVKLVQGYPRILYISCNPETLCANLEQLQQTHKISRLALFDQFPYTHHMECGVLLEK 365 Query: 365 K 365 + Sbjct: 366 R 366 >gi|167551369|ref|ZP_02345124.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205323670|gb|EDZ11509.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 366 Score = 508 bits (1307), Expect = e-142, Method: Compositional matrix adjust. Identities = 240/361 (66%), Positives = 286/361 (79%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L +QYE QLAEKV RL+ MM F ++FRS HYRMRAEF +WHDGDDLYHIMFD Sbjct: 6 LPTEQYEAQLAEKVARLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRLWHDGDDLYHIMFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTK R+R+D F S LIN LM M+A +R LR KLFQIDYLT+ S+QA+V+L+YH Sbjct: 66 QQTKSRIRVDTFPAASQLINTLMKAMIAGVRDNHALRHKLFQIDYLTTLSNQAVVSLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + LD+ WRE A LRDAL A+ + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E Sbjct: 126 KKLDEEWREAATALRDALRAQGLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+ MLEW L TK +GDLLELYCGNGNFSL LAR+F+RVLA EIAKPSV Sbjct: 186 NSFTQPNAAMNIQMLEWALEVTKDSKGDLLELYCGNGNFSLALARNFNRVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAANH++NV+I+RM+++EFTQAM REFNRL+ ID+ Y+ +TIFVDPPRSGL Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKRYQCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D T MVQAYP ILYISCNP++LC++L LS THT+ RLALFDQFPYT HMECGVLL Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLKTLSQTHTVSRLALFDQFPYTHHMECGVLLTA 365 Query: 365 K 365 + Sbjct: 366 R 366 >gi|168244113|ref|ZP_02669045.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|194448074|ref|YP_002048126.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|226705989|sp|B4TCR0|TRMA_SALHS RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|194406378|gb|ACF66597.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|205336861|gb|EDZ23625.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] Length = 366 Score = 508 bits (1307), Expect = e-142, Method: Compositional matrix adjust. Identities = 239/361 (66%), Positives = 286/361 (79%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L +QYE QLAEKV RL+ MM F ++FRS HYRMRAEF +WHDGDDLYHIMFD Sbjct: 6 LPTEQYEAQLAEKVARLQSMMAPFSGLVPEVFRSPVSHYRMRAEFRLWHDGDDLYHIMFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTK R+R+D F S LIN LM M+A +R LR KLFQ+DYLT+ S+QA+V+L+YH Sbjct: 66 QQTKSRIRVDTFPAASQLINTLMKAMIAGVRDNHALRHKLFQMDYLTTLSNQAVVSLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + LD+ WRE A LRDAL A+ + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E Sbjct: 126 KKLDEEWREAATALRDALRAQGLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+ MLEW L TK +GDLLELYCGNGNFSL LAR+F+RVLA EIAKPSV Sbjct: 186 NSFTQPNAAMNIQMLEWALEVTKDSKGDLLELYCGNGNFSLALARNFNRVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAANH++NV+I+RM+++EFTQAM REFNRL+ ID+ Y+ +TIFVDPPRSGL Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKGYQCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D T MVQAYP ILYISCNP++LC++L LS THT+ RLALFDQFPYT HMECGVLL Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHTVSRLALFDQFPYTHHMECGVLLTA 365 Query: 365 K 365 + Sbjct: 366 R 366 >gi|56415966|ref|YP_153041.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197364893|ref|YP_002144530.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|81599682|sp|Q5PK68|TRMA_SALPA RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|226705991|sp|B5BJN9|TRMA_SALPK RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|56130223|gb|AAV79729.1| tRNA (uracil-5)-methyltransferase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197096370|emb|CAR61975.1| tRNA (uracil-5)-methyltransferase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 366 Score = 508 bits (1307), Expect = e-142, Method: Compositional matrix adjust. Identities = 240/361 (66%), Positives = 286/361 (79%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L +QYE QLAEKV RL+ MM F ++FRS HYRMRAEF +WHDGDDLYHIMFD Sbjct: 6 LPTEQYEAQLAEKVARLQSMMAPFSGLVPEVFRSPVSHYRMRAEFRLWHDGDDLYHIMFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTK R+R+D F S LIN LM M+A +R LR KLFQIDYLT+ S+QA+V+L+YH Sbjct: 66 QQTKSRIRVDTFPAASQLINTLMKAMIAGVRDNHALRHKLFQIDYLTTLSNQAVVSLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + LD+ WRE A LRDAL A+ + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E Sbjct: 126 KKLDEEWREAATALRDALRAQGLNVHLIGRATKTKIELDQDYIDERLPVAGKEIIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+ MLEW L TK +GDLLELYCGNGNFSL LAR+F+RVLA EIAKPSV Sbjct: 186 NSFTQPNAAMNIQMLEWALEVTKDSKGDLLELYCGNGNFSLALARNFNRVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAANH++NV+I+RM+++EFTQAM REFNRL+ ID+ Y+ +TIFVDPPRSGL Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKRYQCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D T MVQAYP ILYISCNP++LC++L LS THT+ RLALFDQFPYT HMECGVLL Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHTVSRLALFDQFPYTHHMECGVLLTA 365 Query: 365 K 365 + Sbjct: 366 R 366 >gi|292486641|ref|YP_003529511.1| tRNA (uracil-5-)-methyltransferase [Erwinia amylovora CFBP1430] gi|292897878|ref|YP_003537247.1| tRNA (uracil-5)-methyltransferase [Erwinia amylovora ATCC 49946] gi|291197726|emb|CBJ44821.1| tRNA (uracil-5)-methyltransferase [Erwinia amylovora ATCC 49946] gi|291552058|emb|CBA19095.1| tRNA (uracil-5-)-methyltransferase [Erwinia amylovora CFBP1430] Length = 367 Score = 507 bits (1305), Expect = e-141, Method: Compositional matrix adjust. Identities = 238/361 (65%), Positives = 287/361 (79%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L I+QYE QL EKV RL MM AF VP +++FRS HYRMRAEF IWH+GDDLYHI+FD Sbjct: 6 LPIEQYEDQLTEKVTRLTSMMSAFNVPEVEVFRSAVSHYRMRAEFRIWHEGDDLYHIIFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQT+ER+R+D F S LIN LM ++ +R + +LR KLFQIDYL++ S Q +V+++YH Sbjct: 66 QQTRERIRVDSFPAASELINRLMPRLINRLRDQHVLRFKLFQIDYLSTVSGQMVVSMLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 R LD+ W+ A LRD L A + + LIGRA KTKICLD+DYVDERLTV GR + YRQ+E Sbjct: 126 RKLDEEWQRAATALRDGLRAEGFDLHLIGRATKTKICLDQDYVDERLTVDGREMTYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +NV MLEW L +T+ GDLLELYCGNGNFSL LAR+F+RVLA EIAKPSV Sbjct: 186 NSFTQPNAAVNVKMLEWALDSTRNASGDLLELYCGNGNFSLALARNFNRVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 +A+YNIA N ++NV+I+RM+++EFTQAM ER F RL+ ID+ SY+ +TIFVDPPRSGL Sbjct: 246 ASAQYNIAVNQIDNVQIIRMAAEEFTQAMNGERRFKRLEGIDLTSYQCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 DD TV MVQAYP ILYISCNP +LC +L+ LSTTH I RLALFDQFPYT HMECGVLL R Sbjct: 306 DDETVKMVQAYPCILYISCNPQTLCDNLATLSTTHDITRLALFDQFPYTHHMECGVLLTR 365 Query: 365 K 365 + Sbjct: 366 R 366 >gi|22124241|ref|NP_667664.1| tRNA (uracil-5-)-methyltransferase [Yersinia pestis KIM 10] gi|45442891|ref|NP_994430.1| tRNA (uracil-5-)-methyltransferase [Yersinia pestis biovar Microtus str. 91001] gi|51594482|ref|YP_068673.1| tRNA (uracil-5-)-methyltransferase [Yersinia pseudotuberculosis IP 32953] gi|108806109|ref|YP_650025.1| tRNA (uracil-5-)-methyltransferase [Yersinia pestis Antiqua] gi|108810222|ref|YP_645989.1| tRNA (uracil-5-)-methyltransferase [Yersinia pestis Nepal516] gi|145600770|ref|YP_001164846.1| tRNA (uracil-5-)-methyltransferase [Yersinia pestis Pestoides F] gi|150261126|ref|ZP_01917854.1| tRNA (uracil-5)-methyltransferase [Yersinia pestis CA88-4125] gi|153948502|ref|YP_001399141.1| tRNA (uracil-5-)-methyltransferase [Yersinia pseudotuberculosis IP 31758] gi|162420223|ref|YP_001604758.1| tRNA (uracil-5-)-methyltransferase [Yersinia pestis Angola] gi|165928371|ref|ZP_02224203.1| tRNA (uracil-5-)-methyltransferase [Yersinia pestis biovar Orientalis str. F1991016] gi|165936942|ref|ZP_02225508.1| tRNA (uracil-5-)-methyltransferase [Yersinia pestis biovar Orientalis str. IP275] gi|166009523|ref|ZP_02230421.1| tRNA (uracil-5-)-methyltransferase [Yersinia pestis biovar Antiqua str. E1979001] gi|166213748|ref|ZP_02239783.1| tRNA (uracil-5-)-methyltransferase [Yersinia pestis biovar Antiqua str. B42003004] gi|167401208|ref|ZP_02306708.1| tRNA (uracil-5-)-methyltransferase [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167420927|ref|ZP_02312680.1| tRNA (uracil-5-)-methyltransferase [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167425969|ref|ZP_02317722.1| tRNA (uracil-5-)-methyltransferase [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167467895|ref|ZP_02332599.1| tRNA (uracil-5-)-methyltransferase [Yersinia pestis FV-1] gi|170026281|ref|YP_001722786.1| tRNA (uracil-5-)-methyltransferase [Yersinia pseudotuberculosis YPIII] gi|186893475|ref|YP_001870587.1| tRNA (uracil-5-)-methyltransferase [Yersinia pseudotuberculosis PB1/+] gi|218930911|ref|YP_002348786.1| tRNA (uracil-5-)-methyltransferase [Yersinia pestis CO92] gi|229839607|ref|ZP_04459766.1| tRNA (uracil-5-)-methyltransferase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229841692|ref|ZP_04461848.1| tRNA (uracil-5-)-methyltransferase [Yersinia pestis biovar Orientalis str. India 195] gi|229896696|ref|ZP_04511861.1| tRNA (uracil-5-)-methyltransferase [Yersinia pestis Pestoides A] gi|229904754|ref|ZP_04519865.1| tRNA (uracil-5-)-methyltransferase [Yersinia pestis Nepal516] gi|270488737|ref|ZP_06205811.1| tRNA (uracil-5-)-methyltransferase [Yersinia pestis KIM D27] gi|294505561|ref|YP_003569623.1| tRNA (uracil-5-)-methyltransferase [Yersinia pestis Z176003] gi|20178150|sp|Q8ZAA0|TRMA_YERPE RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|116256438|sp|Q66G58|TRMA_YERPS RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|123246049|sp|Q1CBU2|TRMA_YERPA RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|123373576|sp|Q1CNP1|TRMA_YERPN RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|171704396|sp|A7FD13|TRMA_YERP3 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|172045573|sp|A4TRG1|TRMA_YERPP RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|226705996|sp|B2JZF7|TRMA_YERPB RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|226705997|sp|A9R6N8|TRMA_YERPG RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|226705998|sp|B1JQ46|TRMA_YERPY RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|21957006|gb|AAM83915.1|AE013632_3 tRNA (uracil-5-)-methyltransferase [Yersinia pestis KIM 10] gi|45437758|gb|AAS63307.1| tRNA (uracil-5)-methyltransferase [Yersinia pestis biovar Microtus str. 91001] gi|51587764|emb|CAH19364.1| tRNA (uracil-5)-methyltransferase [Yersinia pseudotuberculosis IP 32953] gi|108773870|gb|ABG16389.1| tRNA (uracil-5-)-methyltransferase [Yersinia pestis Nepal516] gi|108778022|gb|ABG12080.1| tRNA (uracil-5-)-methyltransferase [Yersinia pestis Antiqua] gi|115349522|emb|CAL22496.1| tRNA (uracil-5)-methyltransferase [Yersinia pestis CO92] gi|145212466|gb|ABP41873.1| tRNA (uracil-5-)-methyltransferase [Yersinia pestis Pestoides F] gi|149290534|gb|EDM40611.1| tRNA (uracil-5)-methyltransferase [Yersinia pestis CA88-4125] gi|152959997|gb|ABS47458.1| tRNA (uracil-5-)-methyltransferase [Yersinia pseudotuberculosis IP 31758] gi|162353038|gb|ABX86986.1| tRNA (uracil-5-)-methyltransferase [Yersinia pestis Angola] gi|165915184|gb|EDR33795.1| tRNA (uracil-5-)-methyltransferase [Yersinia pestis biovar Orientalis str. IP275] gi|165919601|gb|EDR36934.1| tRNA (uracil-5-)-methyltransferase [Yersinia pestis biovar Orientalis str. F1991016] gi|165991445|gb|EDR43746.1| tRNA (uracil-5-)-methyltransferase [Yersinia pestis biovar Antiqua str. E1979001] gi|166205150|gb|EDR49630.1| tRNA (uracil-5-)-methyltransferase [Yersinia pestis biovar Antiqua str. B42003004] gi|166961056|gb|EDR57077.1| tRNA (uracil-5-)-methyltransferase [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167049233|gb|EDR60641.1| tRNA (uracil-5-)-methyltransferase [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167055117|gb|EDR64916.1| tRNA (uracil-5-)-methyltransferase [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169752815|gb|ACA70333.1| tRNA (uracil-5-)-methyltransferase [Yersinia pseudotuberculosis YPIII] gi|186696501|gb|ACC87130.1| tRNA (uracil-5-)-methyltransferase [Yersinia pseudotuberculosis PB1/+] gi|229678872|gb|EEO74977.1| tRNA (uracil-5-)-methyltransferase [Yersinia pestis Nepal516] gi|229691031|gb|EEO83084.1| tRNA (uracil-5-)-methyltransferase [Yersinia pestis biovar Orientalis str. India 195] gi|229695973|gb|EEO86020.1| tRNA (uracil-5-)-methyltransferase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229700303|gb|EEO88337.1| tRNA (uracil-5-)-methyltransferase [Yersinia pestis Pestoides A] gi|262363628|gb|ACY60349.1| tRNA (uracil-5-)-methyltransferase [Yersinia pestis D106004] gi|262367558|gb|ACY64115.1| tRNA (uracil-5-)-methyltransferase [Yersinia pestis D182038] gi|270337241|gb|EFA48018.1| tRNA (uracil-5-)-methyltransferase [Yersinia pestis KIM D27] gi|294356020|gb|ADE66361.1| tRNA (uracil-5-)-methyltransferase [Yersinia pestis Z176003] gi|320013491|gb|ADV97062.1| tRNA uracil-5--methyltransferase [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 367 Score = 507 bits (1305), Expect = e-141, Method: Compositional matrix adjust. Identities = 241/361 (66%), Positives = 288/361 (79%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L I+ Y+ QLAEK RL+ MML FQ P +IFRS HYRMRAEF +WHD DDLYHIMFD Sbjct: 6 LPIESYDHQLAEKSARLKAMMLPFQAPEPEIFRSPADHYRMRAEFRVWHDEDDLYHIMFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTK+R+R++ F S LIN LM +M IR EPLLR KLFQIDYL++ S + I +L+YH Sbjct: 66 QQTKQRIRVEQFPVASRLINRLMDALMTAIRAEPLLRRKLFQIDYLSTLSGKLIASLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 R LD+ W++ A+ LRD L A+ + +QLIGRA KTKI LD DY+DE L VAGR +IYRQ+E Sbjct: 126 RQLDEEWQQKALELRDQLRAQGFDLQLIGRAAKTKIMLDHDYIDEVLPVAGREMIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+HMLEW L T+G GDLLELYCGNGNFSL LAR+F+RVLA EIAKPSV Sbjct: 186 NSFTQPNAAVNIHMLEWALDVTQGATGDLLELYCGNGNFSLALARNFERVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAAN+++NV+I+RMS++EFTQAM+ REFNRLK ID+ SY +TIFVDPPRSGL Sbjct: 246 AAAQYNIAANNIDNVQIIRMSAEEFTQAMQGVREFNRLKGIDLGSYNCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D TV +VQAYP ILYISCNP++LC +L L TH I RLALFDQFPYT HMECGVLL + Sbjct: 306 DHETVKLVQAYPRILYISCNPETLCANLEQLQHTHKISRLALFDQFPYTHHMECGVLLEK 365 Query: 365 K 365 + Sbjct: 366 R 366 >gi|317050044|ref|YP_004117692.1| tRNA (uracil-5-)-methyltransferase [Pantoea sp. At-9b] gi|316951661|gb|ADU71136.1| tRNA (uracil-5-)-methyltransferase [Pantoea sp. At-9b] Length = 367 Score = 507 bits (1305), Expect = e-141, Method: Compositional matrix adjust. Identities = 237/361 (65%), Positives = 288/361 (79%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L I+QY+ QLAEKV RL+ MM F P +++FRS HYRMRAEF IWHDGDDLYHI+FD Sbjct: 6 LPIEQYDAQLAEKVSRLQAMMAPFAAPEVEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTK+R+R+D F S LIN LM +M+ IR LR KLFQIDYL++ S+Q +++L+YH Sbjct: 66 QQTKQRIRVDQFPAASALINQLMPKMINAIRDNRALRHKLFQIDYLSTLSNQIVISLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 R L++ W+ A LRDAL A + +QLIGRA KTKICLDRDY+DERL VAG+ +IYRQ+E Sbjct: 126 RKLEEEWQLAASALRDALRAEGFDVQLIGRATKTKICLDRDYIDERLPVAGKEMIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+ MLEW L T+ +GDLLELYCGNGNFSL LAR+F RVLA EIAKPSV Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTQNARGDLLELYCGNGNFSLALARNFRRVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA++NIAANH++NV+I+RM+++EFTQAM R FNRL+ ID+ SY+ +TIFVDPPRSGL Sbjct: 246 AAAQFNIAANHIDNVQIIRMAAEEFTQAMNGVRSFNRLEGIDLQSYQCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D TV MVQAYP ILYISCNP +LC +L+ L+ TH + RLALFDQFPYT HME GVLL R Sbjct: 306 DAETVKMVQAYPRILYISCNPQTLCDNLATLAETHEVARLALFDQFPYTHHMESGVLLTR 365 Query: 365 K 365 K Sbjct: 366 K 366 >gi|300721342|ref|YP_003710613.1| tRNA (uracil-5-)-methyltransferase [Xenorhabdus nematophila ATCC 19061] gi|297627830|emb|CBJ88365.1| tRNA (uracil-5-)-methyltransferase [Xenorhabdus nematophila ATCC 19061] Length = 366 Score = 506 bits (1304), Expect = e-141, Method: Compositional matrix adjust. Identities = 234/365 (64%), Positives = 295/365 (80%) Query: 1 MSGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60 M L + YE QL EKV RL+ MM F VP +FRS HYRMRAEF IWH+ DDLYH Sbjct: 1 MQNALPTENYENQLMEKVHRLKGMMSPFSVPEPDVFRSPASHYRMRAEFRIWHEEDDLYH 60 Query: 61 IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVT 120 IMFDQQTK+R+RID F + LIN++M ++A ++ P+LR KLFQ+DYL+++S++ IV+ Sbjct: 61 IMFDQQTKQRIRIDQFPVANQLINSMMQAIIAGVKDNPVLRHKLFQVDYLSTRSNKIIVS 120 Query: 121 LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIY 180 L+YH+ L+D WRE AI LR+ L A + +QLIGRA+KTKI LD DY+DE L+VAG+T+IY Sbjct: 121 LLYHKKLNDEWREQAIDLRNQLIAEGFDVQLIGRASKTKIMLDHDYIDEELSVAGKTMIY 180 Query: 181 RQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240 RQ+ENSFTQPNA IN+HMLEW + TK +GDLLELYCGNGNFSL LA++F+RVLA EIA Sbjct: 181 RQVENSFTQPNASINIHMLEWAIDITKDSKGDLLELYCGNGNFSLALAQNFERVLATEIA 240 Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300 KPSV AA++NIAAN ++NV+I+RMS++EFTQAM EREFNRL+ ID+ SY+ +TIFVDPP Sbjct: 241 KPSVAAAQFNIAANQIDNVQIIRMSAEEFTQAMNGEREFNRLQGIDLKSYQCETIFVDPP 300 Query: 301 RSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360 RSGLD+ TV MVQAYP ILYISCNP++LC++L L+ TH + +LALFDQFPYT HMECGV Sbjct: 301 RSGLDEKTVRMVQAYPRILYISCNPETLCQNLETLTQTHHVSKLALFDQFPYTHHMECGV 360 Query: 361 LLVRK 365 LL ++ Sbjct: 361 LLEKR 365 >gi|16762314|ref|NP_457931.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29143802|ref|NP_807144.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213427062|ref|ZP_03359812.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213584060|ref|ZP_03365886.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213646314|ref|ZP_03376367.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|289830047|ref|ZP_06547496.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|20178149|sp|Q8Z313|TRMA_SALTI RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|25512146|pir||AC0935 tRNA (uracil-5)-methyltransferase [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16504618|emb|CAD09501.1| tRNA (uracil-5)-methyltransferase [Salmonella enterica subsp. enterica serovar Typhi] gi|29139437|gb|AAO71004.1| tRNA (uracil-5)-methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 366 Score = 506 bits (1304), Expect = e-141, Method: Compositional matrix adjust. Identities = 239/361 (66%), Positives = 286/361 (79%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L +QYE QLAEKV RL+ MM F ++FRS HYRMRAEF +WHDGD+LYHIMFD Sbjct: 6 LPTEQYEAQLAEKVARLQSMMAPFSGLVPEVFRSPVSHYRMRAEFRLWHDGDNLYHIMFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTK R+R+D F S LIN LM M+A +R LR KLFQIDYLT+ S+QA+V+L+YH Sbjct: 66 QQTKSRIRVDTFPAASQLINTLMKAMIAGVRDNHALRHKLFQIDYLTTLSNQAVVSLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + LD+ WRE A LRDAL A+ + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E Sbjct: 126 KKLDEEWREAATALRDALRAQGLNVHLIGRATKTKIELDQDYIDERLPVAGKEIIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+ MLEW L TK +GDLLELYCGNGNFSL LAR+F+RVLA EIAKPSV Sbjct: 186 NSFTQPNAAMNIQMLEWALEVTKDSKGDLLELYCGNGNFSLALARNFNRVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAANH++NV+I+RM+++EFTQAM REFNRL+ ID+ Y+ +TIFVDPPRSGL Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKRYQCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D T MVQAYP ILYISCNP++LC++L LS THT+ RLALFDQFPYT HMECGVLL Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHTVSRLALFDQFPYTHHMECGVLLTA 365 Query: 365 K 365 + Sbjct: 366 R 366 >gi|204930249|ref|ZP_03221226.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|204320653|gb|EDZ05855.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] Length = 366 Score = 506 bits (1303), Expect = e-141, Method: Compositional matrix adjust. Identities = 239/361 (66%), Positives = 285/361 (78%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L +QYE QLAEKV RL+ MM F ++FRS HYRMRAEF +WHDGDDLYHIMFD Sbjct: 6 LPTEQYEAQLAEKVARLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRLWHDGDDLYHIMFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTK R+R+D F S LIN LM M+A +R LR KLFQIDYLT+ S+QA+V+L+YH Sbjct: 66 QQTKSRIRVDTFPAASQLINTLMKAMIAGVRDNHALRHKLFQIDYLTTLSNQAVVSLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + LD+ WR+ A LRDAL A+ + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E Sbjct: 126 KKLDEEWRKAATALRDALRAQGLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+ MLEW L TK +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV Sbjct: 186 NSFTQPNAAMNIQMLEWALEVTKDSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNI ANH++NV+I+RM+++EFTQAM REFNRL+ ID+ Y+ +TIFVDPPRSGL Sbjct: 246 AAAQYNITANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKRYQCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D T MVQAYP ILYISCNP++LC++L LS THT+ RLALFDQFPYT HMECGVLL Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHTVSRLALFDQFPYTHHMECGVLLTA 365 Query: 365 K 365 + Sbjct: 366 R 366 >gi|224585942|ref|YP_002639741.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|254789079|sp|C0Q481|TRMA_SALPC RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|224470470|gb|ACN48300.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] Length = 366 Score = 506 bits (1303), Expect = e-141, Method: Compositional matrix adjust. Identities = 239/361 (66%), Positives = 285/361 (78%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L +QYE QLAEKV RL+ MM F ++FRS HYRMRAEF +WHDGDDLYHIMFD Sbjct: 6 LPTEQYEAQLAEKVARLQSMMAPFSGLVPEVFRSPVSHYRMRAEFRLWHDGDDLYHIMFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTK R+R+D F S LIN LM M+A +R LR KLFQIDYLT+ S+QA+V+L+YH Sbjct: 66 QQTKSRIRVDTFPAASQLINTLMKAMIAGVRDNHALRHKLFQIDYLTTLSNQAVVSLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + LD+ WRE A LRDAL A+ + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E Sbjct: 126 KKLDEEWREAATALRDALRAQGLNVHLIGRATKTKIELDQDYIDERLPVAGKEIIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+ MLEW L TK +GDLLELYCGNGNFSL L R+F+RVLA EIAKPSV Sbjct: 186 NSFTQPNAAMNIQMLEWALEVTKDSKGDLLELYCGNGNFSLALTRNFNRVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAANH++NV+I+RM+++EFTQAM REFNRL+ ID+ Y+ +TIFVDPPRSGL Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKRYQCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D T MVQAYP ILYISCNP++LC++L LS THT+ RLALFDQFPYT HMECGVLL Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHTVSRLALFDQFPYTHHMECGVLLTA 365 Query: 365 K 365 + Sbjct: 366 R 366 >gi|238799430|ref|ZP_04642858.1| tRNA (uracil-5-)-methyltransferase [Yersinia mollaretii ATCC 43969] gi|238716724|gb|EEQ08612.1| tRNA (uracil-5-)-methyltransferase [Yersinia mollaretii ATCC 43969] Length = 367 Score = 506 bits (1302), Expect = e-141, Method: Compositional matrix adjust. Identities = 240/361 (66%), Positives = 286/361 (79%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L D YE QLAEK RL+ MML FQ P +IFRS HYRMRAEF +WHD DDLYHIMFD Sbjct: 6 LPTDGYENQLAEKSARLQAMMLPFQAPAPEIFRSPAEHYRMRAEFRVWHDEDDLYHIMFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTK+R+R++ F SLLIN LM +M IR EP+LR KLFQIDYL++ S + I +L+YH Sbjct: 66 QQTKQRIRVEQFPVASLLINRLMSALMTAIRAEPILRRKLFQIDYLSTLSGKLIASLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 R LD+ W++ A LRD L + + +QLIGRA+KTKI LD DY+DE L VAGR +IYRQ+E Sbjct: 126 RPLDEEWQQKARELRDQLREQGFDLQLIGRASKTKIMLDHDYIDEVLPVAGREMIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+HMLEW + T+ GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV Sbjct: 186 NSFTQPNAAVNIHMLEWAIDVTQQASGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAAN+++NV+I+RMS++EFTQAM+ REFNRLK ID+ SY +TIFVDPPRSGL Sbjct: 246 AAAQYNIAANNIDNVQIIRMSAEEFTQAMQGAREFNRLKGIDLSSYNCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 DD TV +VQAYP ILYISCNP++LC +L L TH I RLALFDQFPYT HMECGV L + Sbjct: 306 DDETVKLVQAYPRILYISCNPETLCANLEQLQHTHKISRLALFDQFPYTHHMECGVWLEK 365 Query: 365 K 365 + Sbjct: 366 R 366 >gi|188532302|ref|YP_001906099.1| tRNA (uracil-5-)-methyltransferase [Erwinia tasmaniensis Et1/99] gi|226705980|sp|B2VGA5|TRMA_ERWT9 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|188027344|emb|CAO95189.1| tRNA (uracil-5-)-methyltransferase [Erwinia tasmaniensis Et1/99] Length = 367 Score = 506 bits (1302), Expect = e-141, Method: Compositional matrix adjust. Identities = 236/361 (65%), Positives = 288/361 (79%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L I+ YE QLAEKV RL MM AF P +++FRS HYRMRAEF IWH+GDDLYHI+FD Sbjct: 6 LPIEHYEDQLAEKVTRLTTMMSAFNAPEVEVFRSAVSHYRMRAEFRIWHEGDDLYHIIFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQT+ER+R+D F S LIN LM ++ IR + LLR KLFQ+DYL++ S Q +V+++YH Sbjct: 66 QQTRERIRVDSFPAASELINRLMPRLIEKIRDQRLLRFKLFQVDYLSTVSGQIVVSMLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 R LD+ W++ A LRD+L A + + LIGRA KTKICLD+DYVDERLTV GR ++YRQ+E Sbjct: 126 RKLDEEWQQAAAALRDSLRAEGFDLHLIGRATKTKICLDQDYVDERLTVDGREMVYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +NV MLEW L +T+ GDLLELYCGNGNFSL LAR+F+RVLA EIAKPSV Sbjct: 186 NSFTQPNAAVNVKMLEWALDSTRHSAGDLLELYCGNGNFSLALARNFNRVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 +A+YNIA N ++NV+I+RM+++EFTQAM ER F RL+ ID+ Y+ +TIFVDPPRSGL Sbjct: 246 ASAQYNIAVNQIDNVQIIRMAAEEFTQAMNGERSFRRLEGIDLTRYQCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 DD TV MVQAYP ILYISCNP +LC +L+ LSTTH + RLALFDQFPYT HMECGVLL R Sbjct: 306 DDETVKMVQAYPRILYISCNPQTLCENLTALSTTHDVTRLALFDQFPYTHHMECGVLLTR 365 Query: 365 K 365 + Sbjct: 366 R 366 >gi|290477206|ref|YP_003470123.1| tRNA (uracil-5-)-methyltransferase [Xenorhabdus bovienii SS-2004] gi|289176556|emb|CBJ83365.1| tRNA (uracil-5-)-methyltransferase [Xenorhabdus bovienii SS-2004] Length = 366 Score = 505 bits (1301), Expect = e-141, Method: Compositional matrix adjust. Identities = 235/365 (64%), Positives = 288/365 (78%) Query: 1 MSGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60 M L + YE QL EKV RL+ MM+ F P ++FRS HYRMRAEF IWH+ DDLYH Sbjct: 1 MQNVLPTEDYENQLMEKVHRLKGMMMPFSAPEPEVFRSPASHYRMRAEFRIWHEQDDLYH 60 Query: 61 IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVT 120 IMFDQQTK+R+RID F + LIN +M ++A ++ LLR KLFQ+DYL++ S++ IV+ Sbjct: 61 IMFDQQTKQRIRIDQFPVANELINQMMQSIIAGVKDNSLLRHKLFQVDYLSTLSNKIIVS 120 Query: 121 LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIY 180 L+YH+ L+D WRE AI LRD L A + +QLIGRA+KTKI LD DY+DE L +AG+T+IY Sbjct: 121 LLYHKKLNDEWREHAITLRDQLKANGFDVQLIGRASKTKIILDHDYIDEELPIAGKTMIY 180 Query: 181 RQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240 RQ+ENSFTQPNA IN HMLEW + TKG +GDLLELYCGNGNFSL LA++FDRVLA EIA Sbjct: 181 RQVENSFTQPNASINTHMLEWAVGITKGAKGDLLELYCGNGNFSLALAQNFDRVLATEIA 240 Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300 KPSV AA++NI AN ++NV+I+RMS++EFTQAM EREFNRL ID+ SY+ +TIFVDPP Sbjct: 241 KPSVAAAQFNIEANQIDNVQIIRMSAEEFTQAMNGEREFNRLHGIDLKSYQCETIFVDPP 300 Query: 301 RSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360 RSGLDDATV MVQ Y ILYISCNP++L ++L L+ TH I RLALFDQFPYT HMECGV Sbjct: 301 RSGLDDATVKMVQGYSQILYISCNPETLSQNLETLTQTHKISRLALFDQFPYTHHMECGV 360 Query: 361 LLVRK 365 LL ++ Sbjct: 361 LLEKR 365 >gi|238921674|ref|YP_002935189.1| tRNA (uracil-5-)-methyltransferase [Edwardsiella ictaluri 93-146] gi|259547825|sp|C5BC48|TRMA_EDWI9 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|238871243|gb|ACR70954.1| tRNA (uracil-5-)-methyltransferase, putative [Edwardsiella ictaluri 93-146] Length = 366 Score = 505 bits (1300), Expect = e-141, Method: Compositional matrix adjust. Identities = 240/361 (66%), Positives = 287/361 (79%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L + Y+ QL+EK+ RL QMM F P +Q FRS HYRMRAEF IWHDGDDLYHIMFD Sbjct: 6 LPTEHYDDQLSEKIHRLEQMMQPFGAPAVQPFRSPVSHYRMRAEFRIWHDGDDLYHIMFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 Q+K+R+R+D F S LIN LM ++ +R P LR KLFQIDYL+++S Q IV+L+YH Sbjct: 66 PQSKQRIRVDQFPAASELINRLMPLLLDALRPNPTLRHKLFQIDYLSTRSGQIIVSLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 R LDDAW++ A LRDAL + + IQLIGRA+KTKICLD+D+VDE L VAGR +IYRQ+E Sbjct: 126 RTLDDAWKQAAEALRDALRGQGFAIQLIGRASKTKICLDQDWVDEVLPVAGRQMIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA IN+ MLEW L AT+G +GDLLELYCGNGNFSL LA +F +VLA EIAKPSV Sbjct: 186 NSFTQPNAAINIQMLEWALDATRGAEGDLLELYCGNGNFSLALAHNFRQVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAAN +NNV+I+RMS++EFTQAM+ R FNRL+ ID+HSY TIFVDPPRSGL Sbjct: 246 AAAQYNIAANQINNVQIIRMSAEEFTQAMQGVRAFNRLQGIDLHSYECNTIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D T+GMVQ YP+ILYISCNP +LC +L L+ +H I RLALFDQFPYT HMECGVLL R Sbjct: 306 DTETLGMVQGYPNILYISCNPLTLCDNLHTLNQSHRITRLALFDQFPYTHHMECGVLLER 365 Query: 365 K 365 + Sbjct: 366 R 366 >gi|312170705|emb|CBX78968.1| tRNA (uracil-5-)-methyltransferase [Erwinia amylovora ATCC BAA-2158] Length = 367 Score = 505 bits (1300), Expect = e-141, Method: Compositional matrix adjust. Identities = 237/361 (65%), Positives = 287/361 (79%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L I+QYE QL EKV RL MM AF VP +++FRS HYRMRAEF IWH+GDDLYHI+FD Sbjct: 6 LPIEQYEDQLTEKVTRLTSMMSAFNVPEVEVFRSAVSHYRMRAEFRIWHEGDDLYHIIFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 Q+T+ER+R+D F S LIN LM ++ +R + +LR KLFQIDYL++ S Q +V+++YH Sbjct: 66 QRTRERIRVDSFPAASELINRLMPRLINRLRDQHVLRFKLFQIDYLSTVSGQMVVSMLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 R LD+ W+ A LRD L A + + LIGRA KTKICLD+DYVDERLTV GR + YRQ+E Sbjct: 126 RKLDEEWQRAATALRDGLRAEGFDLHLIGRATKTKICLDQDYVDERLTVDGREMTYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +NV MLEW L +T+ GDLLELYCGNGNFSL LAR+F+RVLA EIAKPSV Sbjct: 186 NSFTQPNAAVNVKMLEWALDSTRNASGDLLELYCGNGNFSLALARNFNRVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 +A+YNIA N ++NV+I+RM+++EFTQAM ER F RL+ ID+ SY+ +TIFVDPPRSGL Sbjct: 246 ASAQYNIAVNQIDNVQIIRMAAEEFTQAMNGERRFKRLEGIDLTSYQCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 DD TV MVQAYP ILYISCNP +LC +L+ LSTTH I RLALFDQFPYT HMECGVLL R Sbjct: 306 DDETVKMVQAYPCILYISCNPQTLCDNLATLSTTHDITRLALFDQFPYTHHMECGVLLTR 365 Query: 365 K 365 + Sbjct: 366 R 366 >gi|242241178|ref|YP_002989359.1| tRNA (uracil-5-)-methyltransferase [Dickeya dadantii Ech703] gi|262827665|sp|C6C5A0|TRMA_DICDC RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|242133235|gb|ACS87537.1| tRNA (uracil-5-)-methyltransferase [Dickeya dadantii Ech703] Length = 367 Score = 505 bits (1300), Expect = e-141, Method: Compositional matrix adjust. Identities = 234/363 (64%), Positives = 289/363 (79%) Query: 3 GTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIM 62 TL IDQY+ QLAEK RL+ MM ++ P Q+FRS HYRMRAEF IWHDGDDLYHIM Sbjct: 4 STLPIDQYDAQLAEKTGRLKAMMASYHAPEPQVFRSPVSHYRMRAEFRIWHDGDDLYHIM 63 Query: 63 FDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122 FDQQTK R+R+D F S LIN LM ++ +R LR KLFQIDYL++ S++ +V+L+ Sbjct: 64 FDQQTKHRIRVDQFPVASELINRLMPALLNALRPHLTLRRKLFQIDYLSTMSNEIVVSLL 123 Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182 YH+ LDD WR+ AI LRD L + + +QLIGRA KTKICLD DYVDE L VAG+ ++YRQ Sbjct: 124 YHKTLDDEWRQQAIALRDQLRQQGFNLQLIGRATKTKICLDHDYVDECLPVAGKQMVYRQ 183 Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 +ENSFTQPNA +N+ MLEW L+ T+G +GDLLELYCGNGNFSL LAR+F+RVLA EIAKP Sbjct: 184 VENSFTQPNAAMNIQMLEWALSVTEGSKGDLLELYCGNGNFSLALARNFERVLATEIAKP 243 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302 SV+AA+YNI AN + NV+I+RM+++EFTQAMR R+FNRL+ ID+ SYR TIFVDPPRS Sbjct: 244 SVQAAQYNITANQIGNVQIIRMAAEEFTQAMRGVRQFNRLEGIDLASYRCDTIFVDPPRS 303 Query: 303 GLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362 GLD+ TV +VQ YP ILYISCNP++LC +L+ L+ TH + +LALFDQFPYT HMECGVLL Sbjct: 304 GLDEETVRLVQEYPRILYISCNPETLCANLATLTQTHRVSQLALFDQFPYTHHMECGVLL 363 Query: 363 VRK 365 ++ Sbjct: 364 EKR 366 >gi|318603892|emb|CBY25390.1| tRNA (Uracil54-C5-)-methyltransferase [Yersinia enterocolitica subsp. palearctica Y11] Length = 367 Score = 504 bits (1299), Expect = e-141, Method: Compositional matrix adjust. Identities = 242/361 (67%), Positives = 285/361 (78%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L D YE QLAEK RL+ MM FQ P +IFRS HYRMRAEF +WHD DDLYHIMFD Sbjct: 6 LPTDGYEHQLAEKSARLQAMMSPFQAPAAEIFRSPAEHYRMRAEFRVWHDEDDLYHIMFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTK+R+R++ F SLLIN LM +M I EP+LR KLFQIDYL++ S + + TL+YH Sbjct: 66 QQTKQRIRVEQFPVASLLINRLMSALMTAIIAEPILRRKLFQIDYLSTLSGKLLATLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 R LD+ W++ A LRD L + + +QLIGRA+KTKI LD DYVDE L VAGR +IYRQIE Sbjct: 126 RPLDEEWQQKARELRDQLREQGFDLQLIGRASKTKIMLDHDYVDEVLPVAGRDMIYRQIE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+HMLEW + T+ GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV Sbjct: 186 NSFTQPNAAVNIHMLEWAIDVTQHASGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAANH++NV+I+RMS++EFTQAM+ REFNRLK ID+ SY +TIFVDPPRSGL Sbjct: 246 AAAQYNIAANHIDNVQIIRMSAEEFTQAMQGVREFNRLKGIDLTSYNCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 DD TV +VQAYP ILYISCNP++LC +L L TH I RLALFDQFPYT HMECGVLL + Sbjct: 306 DDETVKLVQAYPRILYISCNPETLCANLEQLQHTHKISRLALFDQFPYTHHMECGVLLEK 365 Query: 365 K 365 + Sbjct: 366 R 366 >gi|157147235|ref|YP_001454554.1| tRNA (uracil-5-)-methyltransferase [Citrobacter koseri ATCC BAA-895] gi|172045587|sp|A8AKV5|TRMA_CITK8 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|157084440|gb|ABV14118.1| hypothetical protein CKO_03026 [Citrobacter koseri ATCC BAA-895] Length = 366 Score = 504 bits (1299), Expect = e-141, Method: Compositional matrix adjust. Identities = 238/361 (65%), Positives = 287/361 (79%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L +QY+ QLAEKV RL+ MM F ++FRS HYRMRAEF +WHDGDDLYHI+F+ Sbjct: 6 LPTEQYDAQLAEKVVRLQSMMAPFSDLVPEVFRSPASHYRMRAEFRLWHDGDDLYHIIFE 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTK R+R+D F S LIN LM M+ +R +LR KLFQIDYLT+ S+QA+V+L+YH Sbjct: 66 QQTKSRIRVDSFPAASELINQLMTAMIEGVRHNRVLRHKLFQIDYLTTMSNQAVVSLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + LDD WR+ A LRDAL A+ + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E Sbjct: 126 KKLDDEWRQEAETLRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+ MLEW L ATK +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV Sbjct: 186 NSFTQPNAAMNIQMLEWALDATKASKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAANH++NV+I+RM+++EFTQAM REFNRL+ ID+ SY+ +TIFVDPPRSGL Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D T MVQAYP ILYISCNP++LC++L LS TH + RLALFDQFPYT HMECGVLL Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHNVSRLALFDQFPYTHHMECGVLLTA 365 Query: 365 K 365 + Sbjct: 366 R 366 >gi|123440536|ref|YP_001004530.1| tRNA (uracil-5-)-methyltransferase [Yersinia enterocolitica subsp. enterocolitica 8081] gi|262827716|sp|A1JI40|TRMA_YERE8 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|122087497|emb|CAL10278.1| tRNA (uracil-5)-methyltransferase [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 367 Score = 504 bits (1299), Expect = e-141, Method: Compositional matrix adjust. Identities = 241/361 (66%), Positives = 285/361 (78%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L D YE QLAEK RL+ MM FQ P +IFRS HYRMRAEF +WHD DDLYHIMFD Sbjct: 6 LPTDGYEHQLAEKSARLQAMMSPFQAPAAEIFRSPAEHYRMRAEFRVWHDEDDLYHIMFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTK R+R++ F SLLIN LM +M IR EP+LR KLFQIDYL++ S + + TL+YH Sbjct: 66 QQTKLRIRVEQFPVASLLINRLMSALMTAIRAEPILRHKLFQIDYLSTLSGKLLATLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 R LD+ W++ A LRD L + + +QLIGRA+KTKI LD DY+DE L VAGR +IYRQ+E Sbjct: 126 RPLDEEWQQKARELRDQLREQGFDLQLIGRASKTKIMLDHDYIDEVLPVAGRDMIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+HMLEW + T+ GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV Sbjct: 186 NSFTQPNAAVNIHMLEWAIDVTQHASGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAANH++NV+I+RMS++EFTQAM+ REFNRLK ID+ SY +TIFVDPPRSGL Sbjct: 246 AAAQYNIAANHIDNVQIIRMSAEEFTQAMQGVREFNRLKGIDLTSYNCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 DD TV +VQAYP ILYISCNP++LC +L L TH I RLALFDQFPYT HMECGVLL + Sbjct: 306 DDETVKLVQAYPRILYISCNPETLCANLEQLQYTHKISRLALFDQFPYTHHMECGVLLEK 365 Query: 365 K 365 + Sbjct: 366 R 366 >gi|270265153|ref|ZP_06193415.1| tRNA (uracil-5-)-methyltransferase [Serratia odorifera 4Rx13] gi|270040787|gb|EFA13889.1| tRNA (uracil-5-)-methyltransferase [Serratia odorifera 4Rx13] Length = 367 Score = 504 bits (1298), Expect = e-141, Method: Compositional matrix adjust. Identities = 235/362 (64%), Positives = 292/362 (80%) Query: 4 TLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63 L I++Y+ QLAEK RL+ +M F P ++FRS+ HYRMRAEF IWHD D++YHIMF Sbjct: 5 NLPIERYDDQLAEKTARLKTLMSPFTAPEPEVFRSQVEHYRMRAEFRIWHDEDEMYHIMF 64 Query: 64 DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIY 123 DQQTK+R+R+D F S LIN LM ++A I+ EP+LR KLFQIDYL+++S + I +L+Y Sbjct: 65 DQQTKQRIRVDRFPAASELINRLMSALIAAIKPEPILRHKLFQIDYLSTRSGKIIASLLY 124 Query: 124 HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQI 183 HR LD+AW++ A +LRD+L A+ + +QLIGRA+K KI LD+DYVDE L VAGR +IYRQ+ Sbjct: 125 HRKLDEAWQQQAEKLRDSLRAQGFDLQLIGRASKMKIMLDQDYVDEVLPVAGRDMIYRQV 184 Query: 184 ENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 ENSFTQPNA +N+ MLEW L T G +GDLLELYCGNGNFSL LAR+F+RVLA EIAKPS Sbjct: 185 ENSFTQPNAAMNIQMLEWALDVTTGSKGDLLELYCGNGNFSLALARNFERVLATEIAKPS 244 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 V AA+YNIAANH++NV+I+RM++++FTQAM REFNRLK ID+ SY +TIFVDPPRSG Sbjct: 245 VAAAQYNIAANHIDNVQIIRMAAEDFTQAMNGVREFNRLKGIDLSSYNCETIFVDPPRSG 304 Query: 304 LDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363 LDD TV MVQAYP ILYISCNP++LC +L L TH + RLALFDQFPYT HMECGVLL Sbjct: 305 LDDETVKMVQAYPRILYISCNPETLCANLETLQETHRVSRLALFDQFPYTHHMECGVLLE 364 Query: 364 RK 365 ++ Sbjct: 365 KR 366 >gi|332159760|ref|YP_004296337.1| tRNA (uracil-5-)-methyltransferase [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325663990|gb|ADZ40634.1| tRNA (uracil-5-)-methyltransferase [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330861647|emb|CBX71825.1| tRNA (uracil-5-)-methyltransferase [Yersinia enterocolitica W22703] Length = 367 Score = 504 bits (1298), Expect = e-141, Method: Compositional matrix adjust. Identities = 241/361 (66%), Positives = 285/361 (78%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L D YE QLAEK RL+ MM FQ P +IFRS HYRMRAEF +WHD DDLYHIMFD Sbjct: 6 LPTDGYEHQLAEKSARLQAMMSPFQAPAAEIFRSPAEHYRMRAEFRVWHDEDDLYHIMFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTK+R+R++ F SLLIN LM +M IR EP+LR KLFQIDYL++ S + + TL+YH Sbjct: 66 QQTKQRIRVEQFPVASLLINRLMSALMTAIRAEPILRRKLFQIDYLSTLSGKLLATLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 R LD+ W++ A L+D L + + +QLIGRA+KTKI LD DYVDE L VAGR +IYRQIE Sbjct: 126 RPLDEEWQQKARELQDQLREQGFDLQLIGRASKTKIMLDHDYVDEVLPVAGRDMIYRQIE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 N FTQPNA +N+HMLEW + T+ GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV Sbjct: 186 NCFTQPNAAVNIHMLEWAIDVTQHASGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAANH++NV+I+RMS++EFTQAM+ REFNRLK ID+ SY +TIFVDPPRSGL Sbjct: 246 AAAQYNIAANHIDNVQIIRMSAEEFTQAMQGVREFNRLKGIDLTSYNCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 DD TV +VQAYP ILYISCNP++LC +L L TH I RLALFDQFPYT HMECGVLL + Sbjct: 306 DDETVKLVQAYPRILYISCNPETLCANLEQLQHTHKISRLALFDQFPYTHHMECGVLLEK 365 Query: 365 K 365 + Sbjct: 366 R 366 >gi|238764509|ref|ZP_04625457.1| tRNA (uracil-5-)-methyltransferase [Yersinia kristensenii ATCC 33638] gi|238697321|gb|EEP90090.1| tRNA (uracil-5-)-methyltransferase [Yersinia kristensenii ATCC 33638] Length = 390 Score = 504 bits (1298), Expect = e-141, Method: Compositional matrix adjust. Identities = 240/361 (66%), Positives = 287/361 (79%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L D YE QLAEK RL+ MM FQ P+ Q+FRS HYRMRAEF +WHD DDLYHIMFD Sbjct: 6 LPTDGYEHQLAEKSARLQAMMSPFQAPDPQVFRSPAQHYRMRAEFRVWHDDDDLYHIMFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTK+R+R++ F SLLIN LM +M IR EP+LR KLFQIDYL++ S + I +L+YH Sbjct: 66 QQTKQRIRVEQFPVASLLINRLMSVLMTAIRAEPILRRKLFQIDYLSTLSGKLIASLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 R LD+ W++ A LRD L + + +QLIGRA+KTKI LD DY+DE L VAGR +IYRQ+E Sbjct: 126 RPLDEEWQQKARELRDQLREQGFDLQLIGRASKTKIMLDHDYIDEVLPVAGREMIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+HMLEW + T+ GDLLELYCGNGNFSL LAR+F+RVLA EIAKPSV Sbjct: 186 NSFTQPNAAVNIHMLEWAIDVTQHASGDLLELYCGNGNFSLALARNFERVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAANH++NV+I+RMS++EFTQAM+ REFNRLK ID+ SY +TIFVDPPRSGL Sbjct: 246 AAAQYNIAANHIDNVQIIRMSAEEFTQAMQGVREFNRLKYIDLSSYNCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 DD TV +VQAYP ILYISCNP++LC +L L TH I RLALFDQFPYT HMECGVLL + Sbjct: 306 DDETVKLVQAYPRILYISCNPETLCANLEQLQHTHKISRLALFDQFPYTHHMECGVLLEK 365 Query: 365 K 365 + Sbjct: 366 E 366 >gi|253991701|ref|YP_003043057.1| tRNA (uracil-5-)-methyltransferase [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253783151|emb|CAQ86316.1| tRNA (uracil-5-)-methyltransferase [Photorhabdus asymbiotica] Length = 366 Score = 504 bits (1297), Expect = e-140, Method: Compositional matrix adjust. Identities = 232/364 (63%), Positives = 292/364 (80%) Query: 1 MSGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60 M L + YEQQL EKV RL+ MM +FQ P ++FRS HYRMRAEF IWH+ DDLYH Sbjct: 1 MQNPLPTESYEQQLTEKVSRLKSMMASFQTPEPEVFRSPVSHYRMRAEFRIWHEQDDLYH 60 Query: 61 IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVT 120 IMFDQQTK+R+RI+ F S LIN +M ++ +IR E LR KLFQIDYL++ S++ +V+ Sbjct: 61 IMFDQQTKQRVRINQFPVASNLINKMMEGLIDSIRSEQTLRHKLFQIDYLSTCSNKILVS 120 Query: 121 LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIY 180 L+YH+ L D W + A++LR+ L + + ++LIGRA KTKI LD DY+DE L+VAGR +IY Sbjct: 121 LLYHKKLGDEWTQQALKLRNELRNKGFDVELIGRAAKTKIMLDHDYIDEVLSVAGREMIY 180 Query: 181 RQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240 RQ+ENSFTQPNA +N+HMLEW + TKG +GDLLELYCGNGNFSL LA++F++VLA EIA Sbjct: 181 RQVENSFTQPNASVNIHMLEWAIDITKGSKGDLLELYCGNGNFSLALAQNFEKVLATEIA 240 Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300 KPSV AA+YNI AN+++NV+I+RMS++EFTQAM EREFNRL++ID+ SY+ +TIFVDPP Sbjct: 241 KPSVAAAQYNITANNIDNVQIIRMSAEEFTQAMNGEREFNRLQNIDLKSYQCETIFVDPP 300 Query: 301 RSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360 RSGLD+ TV MVQAYP ILYISCNP++LC +L L+ TH I RLALFDQFPYT HMECGV Sbjct: 301 RSGLDEKTVKMVQAYPRILYISCNPETLCHNLETLTQTHKISRLALFDQFPYTHHMECGV 360 Query: 361 LLVR 364 LL + Sbjct: 361 LLEK 364 >gi|194442689|ref|YP_002043391.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|226705990|sp|B4T0X5|TRMA_SALNS RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|194401352|gb|ACF61574.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Newport str. SL254] Length = 366 Score = 504 bits (1297), Expect = e-140, Method: Compositional matrix adjust. Identities = 238/361 (65%), Positives = 285/361 (78%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L +QYE QLAEKV RL+ MM F ++FRS HYRMRAEF +WHDGDDLYHIMFD Sbjct: 6 LPTEQYEAQLAEKVARLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRLWHDGDDLYHIMFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTK R+R+D F S LIN LM M+A +R LR KLFQ+DYLT+ S+QA+V+L+YH Sbjct: 66 QQTKSRIRVDTFPAASQLINTLMKAMIAGVRDNHALRHKLFQMDYLTTLSNQAVVSLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + LD+ WRE A LRDAL A+ + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E Sbjct: 126 KKLDEEWREAATALRDALRAQGLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+ MLEW L TK +GDLLELYCGNGNFSL LAR+F+RVLA EIAKPSV Sbjct: 186 NSFTQPNAAMNIQMLEWALEVTKDSKGDLLELYCGNGNFSLALARNFNRVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAANH++NV+I+RM+++EFT AM REFNRL+ ID+ Y+ +TIFVDPPRSGL Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTLAMNGVREFNRLQGIDLKGYQCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D T MVQAYP ILYISCNP++LC++L LS THT+ RLALFDQFPYT HMECGVLL Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHTVSRLALFDQFPYTHHMECGVLLTA 365 Query: 365 K 365 + Sbjct: 366 R 366 >gi|238785773|ref|ZP_04629745.1| tRNA (uracil-5-)-methyltransferase [Yersinia bercovieri ATCC 43970] gi|238713307|gb|EEQ05347.1| tRNA (uracil-5-)-methyltransferase [Yersinia bercovieri ATCC 43970] Length = 367 Score = 504 bits (1297), Expect = e-140, Method: Compositional matrix adjust. Identities = 239/361 (66%), Positives = 286/361 (79%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L D Y+ QLAEK RL+ MML FQ P +IFRS HYRMRAEF +WHD DDLYHIMFD Sbjct: 6 LPTDGYDHQLAEKSARLQAMMLPFQAPAPEIFRSPAEHYRMRAEFRVWHDDDDLYHIMFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTK+R+R++ F SLLIN LM +M IR EP+LR KLFQIDYL++ S + I +L+YH Sbjct: 66 QQTKQRIRVEQFPVASLLINRLMSALMTAIRAEPILRRKLFQIDYLSTLSGKLIASLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 R LD+ W++ A+ LRD L + + +QLIGRA KTKI LD DY+DE L VAGR +IYRQ+E Sbjct: 126 RQLDEEWQQKALELRDQLREQGFDLQLIGRAAKTKIMLDHDYIDEVLPVAGREMIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+HMLEW + T+ GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV Sbjct: 186 NSFTQPNAAVNIHMLEWAIDVTQHASGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAAN+++NV+I+RMS++EFTQAM+ REF RLK ID+ SY +TIFVDPPRSGL Sbjct: 246 AAAQYNIAANNIDNVQIIRMSAEEFTQAMQGVREFTRLKGIDLKSYNCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 DD TV +VQAYP ILYISCNP++LC +L L TH I RLALFDQFPYT HMECGVLL + Sbjct: 306 DDETVKLVQAYPRILYISCNPETLCANLEQLQHTHKISRLALFDQFPYTHHMECGVLLEK 365 Query: 365 K 365 + Sbjct: 366 R 366 >gi|294634277|ref|ZP_06712819.1| tRNA (uracil-5-)-methyltransferase [Edwardsiella tarda ATCC 23685] gi|291092317|gb|EFE24878.1| tRNA (uracil-5-)-methyltransferase [Edwardsiella tarda ATCC 23685] Length = 372 Score = 503 bits (1296), Expect = e-140, Method: Compositional matrix adjust. Identities = 238/361 (65%), Positives = 285/361 (78%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L + Y++QL EK+ RL QMM F P +Q FRS HYRMRAEF IWH+GDDLYHIMFD Sbjct: 12 LPTEHYDEQLQEKIHRLAQMMQPFGAPAVQAFRSPASHYRMRAEFRIWHEGDDLYHIMFD 71 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QTK R+R+D F S LIN LM ++ +R P LR KLFQIDYL+++S+QAI++L+YH Sbjct: 72 AQTKRRIRVDQFPAASELINRLMPLLIDALRPNPTLRHKLFQIDYLSTRSNQAIISLLYH 131 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 R LDDAWR A LR+ L A+ Y +QLIGRA+KTKICLDRD+VDE L +AGR +IYRQ+E Sbjct: 132 RPLDDAWRHAAQTLRNQLQAQGYDVQLIGRASKTKICLDRDWVDEVLPIAGRDMIYRQVE 191 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA IN+ MLEW L AT+ +GDLLELYCGNGNFSL LAR+F RVLA EIAKPSV Sbjct: 192 NSFTQPNAAINIQMLEWALDATQDARGDLLELYCGNGNFSLALARNFRRVLATEIAKPSV 251 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNI AN ++NV+I+RMS++EFTQAM+ R FNRL+ ID+HSY TIFVDPPRSGL Sbjct: 252 AAAQYNITANQIDNVQIIRMSAEEFTQAMQGVRAFNRLQGIDLHSYACNTIFVDPPRSGL 311 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D T+ MVQ YP ILYISCNP++LC +L LS +H + RLALFDQFPYT HMECGVLL R Sbjct: 312 DAETLNMVQGYPQILYISCNPETLCANLQTLSQSHRMTRLALFDQFPYTHHMECGVLLER 371 Query: 365 K 365 + Sbjct: 372 R 372 >gi|238789624|ref|ZP_04633408.1| tRNA (uracil-5-)-methyltransferase [Yersinia frederiksenii ATCC 33641] gi|238722377|gb|EEQ14033.1| tRNA (uracil-5-)-methyltransferase [Yersinia frederiksenii ATCC 33641] Length = 367 Score = 503 bits (1294), Expect = e-140, Method: Compositional matrix adjust. Identities = 237/361 (65%), Positives = 287/361 (79%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L D Y+ QLAEK RL+ MM FQ P ++FRS HYRMRAEF +WHD DDLYHIMFD Sbjct: 6 LPTDGYDHQLAEKSARLQAMMSPFQAPAPEVFRSPAEHYRMRAEFRVWHDEDDLYHIMFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTK+R+R++ F S+LIN LM +M IR EP+LR KLFQIDYL++ S + I +L+YH Sbjct: 66 QQTKQRIRVEQFPVASVLINRLMSALMTAIRAEPILRRKLFQIDYLSTLSGKLIASLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 R LD+ W++ A+ LRD L + + +QLIGRA+KTKI LD DY+DE L VAGR +IYRQ+E Sbjct: 126 RQLDEEWQQKALELRDQLREQGFDLQLIGRASKTKIMLDHDYIDEVLPVAGREMIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+HMLEW + T+ GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV Sbjct: 186 NSFTQPNAAVNIHMLEWAIDVTQHASGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAAN+++NV+I+RMS++EFTQAM+ REFNRLK ID+ SY +TIFVDPPRSGL Sbjct: 246 AAAQYNIAANNIDNVQIIRMSAEEFTQAMQGVREFNRLKGIDLSSYNCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 DD TV +VQAYP ILYISCNP++LC +L L TH I RLALFDQFPYT HMECGVLL + Sbjct: 306 DDETVKLVQAYPRILYISCNPETLCANLEQLQHTHKISRLALFDQFPYTHHMECGVLLEQ 365 Query: 365 K 365 + Sbjct: 366 R 366 >gi|283834733|ref|ZP_06354474.1| tRNA (uracil-5-)-methyltransferase [Citrobacter youngae ATCC 29220] gi|291069663|gb|EFE07772.1| tRNA (uracil-5-)-methyltransferase [Citrobacter youngae ATCC 29220] Length = 366 Score = 503 bits (1294), Expect = e-140, Method: Compositional matrix adjust. Identities = 234/361 (64%), Positives = 287/361 (79%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L +QY+ QLAEKV RL+ +M F ++FRS HYRMRAEF +WHDGDDLYHIMFD Sbjct: 6 LPTEQYDAQLAEKVVRLQSLMTPFYAQAPEVFRSPVSHYRMRAEFRLWHDGDDLYHIMFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QTK R+R+D F S LIN LM M+ +R P+LR KLFQIDYLT+ SD+A+V+++YH Sbjct: 66 SQTKRRIRVDSFPAASELINTLMTAMIEGVRNNPVLRHKLFQIDYLTTLSDRAVVSMLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + LDD WR+ A LRDAL A+ + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E Sbjct: 126 KKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEIIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+ MLEW + T+G +GDLLELYCGNGNFSL LA++F+RVLA EIAKPSV Sbjct: 186 NSFTQPNAAMNIQMLEWAIDVTRGSKGDLLELYCGNGNFSLALAQNFNRVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAAN ++NV+I+RM+++EFTQAM REFNRL ID+ SY+ +TIFVDPPRSGL Sbjct: 246 AAAQYNIAANQIDNVQIIRMAAEEFTQAMNGVREFNRLLGIDLKSYQCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D T MVQAYP I+YISCNP++LC++L LS TH +ERLALFDQFPYT HMECGVLL + Sbjct: 306 DSETEKMVQAYPRIMYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTK 365 Query: 365 K 365 K Sbjct: 366 K 366 >gi|157373003|ref|YP_001480992.1| tRNA (uracil-5-)-methyltransferase [Serratia proteamaculans 568] gi|172047791|sp|A8GL74|TRMA_SERP5 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|157324767|gb|ABV43864.1| tRNA (uracil-5-)-methyltransferase [Serratia proteamaculans 568] Length = 367 Score = 502 bits (1293), Expect = e-140, Method: Compositional matrix adjust. Identities = 235/362 (64%), Positives = 289/362 (79%) Query: 4 TLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63 L I++Y+ QLAEK RL+ +M F P ++FRS HYRMRAEF IWHD D++YHIMF Sbjct: 5 NLPIERYDDQLAEKTARLKTLMSPFTAPEPEVFRSPVSHYRMRAEFRIWHDEDEMYHIMF 64 Query: 64 DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIY 123 DQQTK+R+R+D F S LIN LM ++A I+ EP+LR KLFQIDYL+++S + I +L+Y Sbjct: 65 DQQTKQRIRVDKFPAASELINRLMSALIAAIKPEPILRRKLFQIDYLSTRSGKIIASLLY 124 Query: 124 HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQI 183 HR LDD W++ A +LRD L A+ + +QLIGRA+K KI LD+DYVDE L VAGR +IYRQ+ Sbjct: 125 HRKLDDEWQQQAEKLRDDLRAQGFDLQLIGRASKMKIMLDQDYVDEVLPVAGRDMIYRQV 184 Query: 184 ENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 ENSFTQPNA +N+ MLEW L T G +GDLLELYCGNGNFSL LAR+F+RVLA EIAKPS Sbjct: 185 ENSFTQPNAALNIQMLEWALDVTTGSKGDLLELYCGNGNFSLALARNFERVLATEIAKPS 244 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 V AA+YNIAAN ++NV+I+RM++++FTQAM REFNRLK ID+ SY +TIFVDPPRSG Sbjct: 245 VAAAQYNIAANQIDNVQIIRMAAEDFTQAMNGVREFNRLKGIDLSSYNCETIFVDPPRSG 304 Query: 304 LDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363 LDD TV MVQAYP ILYISCNP++LC +L L TH+I RLALFDQFPYT HMECGVLL Sbjct: 305 LDDETVKMVQAYPRILYISCNPETLCANLETLQQTHSISRLALFDQFPYTHHMECGVLLE 364 Query: 364 RK 365 ++ Sbjct: 365 KR 366 >gi|259906846|ref|YP_002647202.1| tRNA (uracil-5-)-methyltransferase [Erwinia pyrifoliae Ep1/96] gi|224962468|emb|CAX53923.1| tRNA (Uracil-5-)-methyltransferase [Erwinia pyrifoliae Ep1/96] gi|283476638|emb|CAY72466.1| tRNA (uracil-5-)-methyltransferase [Erwinia pyrifoliae DSM 12163] Length = 367 Score = 502 bits (1293), Expect = e-140, Method: Compositional matrix adjust. Identities = 236/361 (65%), Positives = 287/361 (79%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L I+QYE QL EKV RL MM AF P +++FRS HYRMRAEF IWH+GDDLYHI+FD Sbjct: 6 LPIEQYEDQLTEKVTRLTSMMSAFNAPEVEVFRSAVSHYRMRAEFRIWHEGDDLYHIIFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQT+ER+R+D F S LIN LM ++ IR + +LR KLFQIDYL++ S Q +V+++YH Sbjct: 66 QQTRERIRVDNFPAASELINRLMPRLIDRIRDQRVLRFKLFQIDYLSTVSGQMVVSMLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 R LD+ W++ A LRD+L A + + LIGRA KTKICLD+DYVDERLTV G + YRQ+E Sbjct: 126 RKLDEEWQQAAKALRDSLRAEGFDLHLIGRATKTKICLDQDYVDERLTVDGHEITYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +NV MLEW L +T+ +GDLLELYCGNGNFSL LAR+F+RVLA EIAKPSV Sbjct: 186 NSFTQPNAAVNVKMLEWALDSTRHARGDLLELYCGNGNFSLALARNFNRVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 +A+YNIA N + NV+I+RM+++EFTQAM ER F RL+ ID+ SY+ +T+FVDPPRSGL Sbjct: 246 ASAQYNIAVNQIENVQIIRMAAEEFTQAMNGERRFKRLEGIDLTSYQCETLFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 DD TV MVQAYP ILYISCNP +LC +L+ LSTTH I RLALFDQFPYT HMECGVLL R Sbjct: 306 DDETVKMVQAYPRILYISCNPQTLCDNLATLSTTHDITRLALFDQFPYTHHMECGVLLTR 365 Query: 365 K 365 + Sbjct: 366 R 366 >gi|310766062|gb|ADP11012.1| tRNA (uracil-5-)-methyltransferase [Erwinia sp. Ejp617] Length = 367 Score = 502 bits (1293), Expect = e-140, Method: Compositional matrix adjust. Identities = 235/363 (64%), Positives = 287/363 (79%) Query: 3 GTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIM 62 G L I+QYE QL EKV RL MM AF P +++FRS HYRMRAEF IWH+GDDLYHI+ Sbjct: 4 GQLPIEQYEDQLTEKVTRLTSMMSAFNAPEVEVFRSAVSHYRMRAEFRIWHEGDDLYHII 63 Query: 63 FDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122 FDQQT+ER+R+D F S LIN +M ++ IR + +LR KLFQIDYL++ S Q +V+++ Sbjct: 64 FDQQTRERIRVDSFPAASELINRVMPRLIDRIRDQRVLRFKLFQIDYLSTVSGQMVVSML 123 Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182 YHR LD+ W++ A LRD+L A + + LIGRA KTKICLD+DYVDERL V G + YRQ Sbjct: 124 YHRKLDEEWQQAATALRDSLRAEGFDLHLIGRATKTKICLDQDYVDERLIVDGHEMTYRQ 183 Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 +ENSFTQPNA +NV MLEW L +T+ +GDLLELYCGNGNFSL LAR+F+RVLA EIAKP Sbjct: 184 VENSFTQPNAAVNVKMLEWALDSTRHARGDLLELYCGNGNFSLALARNFNRVLATEIAKP 243 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302 SV +A+YNIA N + NV+I+RM+++EFTQAM ER F RL+ ID+ SY+ +T+FVDPPRS Sbjct: 244 SVASAQYNIAVNQIENVQIIRMAAEEFTQAMNGERRFKRLEGIDLTSYQCETLFVDPPRS 303 Query: 303 GLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362 GLDD TV MVQAYP ILYISCNP +LC +L+ LSTTH I RLALFDQFPYT HMECGVLL Sbjct: 304 GLDDETVKMVQAYPRILYISCNPQTLCDNLATLSTTHDITRLALFDQFPYTHHMECGVLL 363 Query: 363 VRK 365 R+ Sbjct: 364 TRR 366 >gi|271502435|ref|YP_003335461.1| tRNA (uracil-5-)-methyltransferase [Dickeya dadantii Ech586] gi|270345990|gb|ACZ78755.1| tRNA (uracil-5-)-methyltransferase [Dickeya dadantii Ech586] Length = 367 Score = 502 bits (1293), Expect = e-140, Method: Compositional matrix adjust. Identities = 238/361 (65%), Positives = 286/361 (79%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L IDQY+ QL EK RL MM F P +FRS HYRMRAEF IWHDGDDLYHIMFD Sbjct: 6 LPIDQYDAQLEEKTGRLGAMMAPFDAPAPVVFRSPVSHYRMRAEFRIWHDGDDLYHIMFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTK+R+R+D F S LIN LM ++ +R EP+LR KLFQIDYL++ S + V+L+YH Sbjct: 66 QQTKQRIRVDQFPAASELINRLMPVLLNALRAEPVLRRKLFQIDYLSTLSGEIAVSLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + LDD W++ A L D L A+ + +QLIGRA KTKICLDRDYVDE L VAGR +IYRQ+E Sbjct: 126 KALDDEWQQQARLLCDGLRAQGFALQLIGRATKTKICLDRDYVDECLPVAGRQMIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+ MLEW L+ T+G GDLLELYCGNGNFSL LAR+F+RVLA EIAKPSV Sbjct: 186 NSFTQPNAMMNIQMLEWALSVTQGATGDLLELYCGNGNFSLALARNFERVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAAN ++NV+I+RM+++EFTQAM R+FNRL+ ID+ SYR +TIFVDPPRSGL Sbjct: 246 AAAQYNIAANQIDNVQIIRMAAEEFTQAMTGVRQFNRLQGIDLKSYRCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D+ TV +VQAYP ILYISCNP++LC +L LS TH I +LALFDQFPYT HMECGVLL + Sbjct: 306 DNETVKLVQAYPRILYISCNPETLCANLETLSQTHQISQLALFDQFPYTHHMECGVLLEK 365 Query: 365 K 365 + Sbjct: 366 R 366 >gi|251787782|ref|YP_003002503.1| tRNA (uracil-5-)-methyltransferase [Dickeya zeae Ech1591] gi|262827675|sp|C6CG41|TRMA_DICZE RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|247536403|gb|ACT05024.1| tRNA (uracil-5-)-methyltransferase [Dickeya zeae Ech1591] Length = 367 Score = 502 bits (1293), Expect = e-140, Method: Compositional matrix adjust. Identities = 237/361 (65%), Positives = 284/361 (78%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L IDQY+ QL EK RL MM F P +FRS HYRMRAEF IWHDGDDLYHIMFD Sbjct: 6 LPIDQYDAQLEEKTGRLGAMMAPFDAPAPAVFRSPVSHYRMRAEFRIWHDGDDLYHIMFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTK+R+R+D F S LIN LM ++ +R EP+LR KLFQ+DYL++ S + V+L+YH Sbjct: 66 QQTKQRIRVDQFPAASELINRLMPVLLNALRAEPVLRRKLFQLDYLSTLSGEIAVSLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + LDD WR+ A L D L A+ + +QLIGRA KTKICLDRDYVDE L VAGR +IYRQ+E Sbjct: 126 KALDDEWRQRARELCDELRAQGFALQLIGRATKTKICLDRDYVDECLPVAGRQMIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+ MLEW L+ T+G GDLLELYCGNGNFSL LAR+F+RVLA EIAKPSV Sbjct: 186 NSFTQPNAMMNIQMLEWALSVTQGSTGDLLELYCGNGNFSLALARNFERVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAAN ++NV+I+RM+++EFTQAM R+FNRL+ ID+ YR +TIFVDPPRSGL Sbjct: 246 AAAQYNIAANQIDNVQIIRMAAEEFTQAMNGVRQFNRLQGIDLAGYRCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 DD T +VQAYP ILYISCNP++LC +L LS TH I +LALFDQFPYT HMECGVLL + Sbjct: 306 DDGTAKLVQAYPRILYISCNPETLCANLETLSQTHRISQLALFDQFPYTHHMECGVLLEK 365 Query: 365 K 365 + Sbjct: 366 R 366 >gi|304398951|ref|ZP_07380820.1| tRNA (uracil-5-)-methyltransferase [Pantoea sp. aB] gi|304353411|gb|EFM17789.1| tRNA (uracil-5-)-methyltransferase [Pantoea sp. aB] Length = 367 Score = 501 bits (1291), Expect = e-140, Method: Compositional matrix adjust. Identities = 237/361 (65%), Positives = 283/361 (78%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L I+ Y+ QLAEKV RL MM F P++++FRS HYRMRAEF +WHDGDD+YHI+FD Sbjct: 6 LPIEDYDAQLAEKVSRLETMMTPFAAPDVEVFRSPVSHYRMRAEFRLWHDGDDIYHIIFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQT+ER+R+D F S LIN LM +M+A IR LR KLFQIDYL++ S+Q +++L+YH Sbjct: 66 QQTRERIRVDQFPAASQLINQLMPKMIAAIRDNRTLRHKLFQIDYLSTMSNQIVISLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 R LDD W++ A LRD L A +QLIGRA KTKICLDRDYVDE L VAGR +IYRQ+E Sbjct: 126 RKLDDEWQQAAAALRDQLRAEGLDVQLIGRATKTKICLDRDYVDECLPVAGREIIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+ MLEW L T+ QGDLLELYCGNGNFSL LAR+F RVLA EIAKPSV Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTQDSQGDLLELYCGNGNFSLALARNFRRVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 +A+YNIA N ++NV+I+RM+++EFTQAM R FNRL+ ID+ SY +TIFVDPPRSGL Sbjct: 246 ASAQYNIAVNQIDNVQIIRMAAEEFTQAMNGVRSFNRLEGIDLTSYECETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D+ TV MVQAYP ILYISCNP +L +L LS TH + RLALFDQFPYT HMECGVLL R Sbjct: 306 DEETVKMVQAYPRILYISCNPQTLSDNLQTLSETHDVTRLALFDQFPYTHHMECGVLLTR 365 Query: 365 K 365 K Sbjct: 366 K 366 >gi|238760129|ref|ZP_04621277.1| tRNA (uracil-5-)-methyltransferase [Yersinia aldovae ATCC 35236] gi|238701627|gb|EEP94196.1| tRNA (uracil-5-)-methyltransferase [Yersinia aldovae ATCC 35236] Length = 367 Score = 501 bits (1290), Expect = e-140, Method: Compositional matrix adjust. Identities = 237/361 (65%), Positives = 287/361 (79%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L D Y+QQLAEK RL+ MM FQ P +IFRS HYRMRAEF +WHD DDLYHIMFD Sbjct: 6 LPTDSYDQQLAEKSARLQAMMSPFQAPAAEIFRSPVEHYRMRAEFRVWHDEDDLYHIMFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTK+R+R++ F +LLIN+LM +M IR EPLLR KLFQIDYL++ S + I +L+YH Sbjct: 66 QQTKQRIRVEQFPVANLLINSLMSVLMTAIRAEPLLRRKLFQIDYLSTMSGKLIASLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 R LD+ W++ A+ LRD L A+ + +QLIGRA KTKI LD DY+DE L VAGR +IYRQ+E Sbjct: 126 RQLDEEWQQKALVLRDQLRAQGFDVQLIGRAAKTKIMLDHDYIDEVLPVAGRDMIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+HMLEW + T+ GDLLELYCGNGNFSL LAR+F+RVLA EIAKPSV Sbjct: 186 NSFTQPNAAVNIHMLEWAIDVTQNASGDLLELYCGNGNFSLALARNFERVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNI+AN+++NV+I+RMS++EFTQAM+ REFNRLK ID+ SY +TIFVDPPRSGL Sbjct: 246 AAAQYNISANNIDNVQIIRMSAEEFTQAMQGIREFNRLKGIDLSSYNCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 DD T+ MVQ YP ILYISCN ++LC +L L TH I RLALFDQFPYT HMECGVLL + Sbjct: 306 DDETLKMVQGYPRILYISCNLETLCANLEQLQHTHKISRLALFDQFPYTHHMECGVLLEK 365 Query: 365 K 365 + Sbjct: 366 R 366 >gi|300714766|ref|YP_003739569.1| tRNA (Uracil-5-)-methyltransferase [Erwinia billingiae Eb661] gi|299060602|emb|CAX57709.1| tRNA (Uracil-5-)-methyltransferase [Erwinia billingiae Eb661] Length = 366 Score = 500 bits (1288), Expect = e-139, Method: Compositional matrix adjust. Identities = 231/361 (63%), Positives = 289/361 (80%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L I+ Y+ QL EKV RL+ +M F P + +FRS HYRMRAEF +WH+GDDLYHI+FD Sbjct: 6 LPIEHYDAQLEEKVTRLQTLMTPFAAPEVDVFRSPVSHYRMRAEFRLWHEGDDLYHIIFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQT+ER+R+D F S LINALM ++A +R LR KLFQ+DYL++ S+Q +V+++YH Sbjct: 66 QQTRERIRVDSFPAASQLINALMPRLIAAVRDNKTLRHKLFQVDYLSTLSNQIVVSMLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 R L + W++ A LRDAL A + +QLIGRA KTKICLDRDYVDE L VAG+ +IYRQ+E Sbjct: 126 RALTEEWQQEAEALRDALRAEGFDLQLIGRATKTKICLDRDYVDECLPVAGKDIIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+ MLEW L TK GDLLELYCGNGNFSL LAR+F+RVLA EIAKPSV Sbjct: 186 NSFTQPNAAMNIQMLEWALEVTKDSSGDLLELYCGNGNFSLALARNFNRVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 +A+YNIA N+++NV+I+RMS++EFT+AM+ +R+F RL+ ID+ SY+ +TIFVDPPRSGL Sbjct: 246 ASAQYNIAVNNIDNVQIIRMSAEEFTEAMKGKRQFRRLEGIDLQSYQCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D TV MVQAYP ILYISCNP +LC +L+ LS THT+E+LALFDQFPYT HMECGVLL R Sbjct: 306 DADTVKMVQAYPRILYISCNPQTLCENLATLSETHTVEKLALFDQFPYTHHMECGVLLTR 365 Query: 365 K 365 + Sbjct: 366 R 366 >gi|308188584|ref|YP_003932715.1| tRNA (uracil-5-)-methyltransferase [Pantoea vagans C9-1] gi|308059094|gb|ADO11266.1| tRNA (uracil-5-)-methyltransferase [Pantoea vagans C9-1] Length = 367 Score = 500 bits (1288), Expect = e-139, Method: Compositional matrix adjust. Identities = 236/361 (65%), Positives = 283/361 (78%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L I++Y+ QLAEKV RL MM F P++++FRS HYRMRAEF +WHDGDD+YHI+FD Sbjct: 6 LPIEEYDAQLAEKVSRLETMMTPFAAPDVEVFRSPVSHYRMRAEFRLWHDGDDIYHIIFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQT+ER+R+D F S LIN LM +M+A IR LR KLFQIDYL++ S+Q +++L+YH Sbjct: 66 QQTRERIRVDQFPAASQLINQLMPKMIAAIRDNRTLRHKLFQIDYLSTMSNQIVISLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 R LDD W + A LRD L A +QLIGRA KTKICLDRD+VDE L VAGR +IYRQ+E Sbjct: 126 RKLDDEWLQAAAALRDQLRAEGLDVQLIGRATKTKICLDRDFVDECLPVAGREIIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+ MLEW L T+ QGDLLELYCGNGNFSL LAR+F RVLA EIAKPSV Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTQDSQGDLLELYCGNGNFSLALARNFRRVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 +A+YNIA N ++NV+I+RM+++EFTQAM R FNRL+ ID+ SY +TIFVDPPRSGL Sbjct: 246 ASAQYNIAVNQIDNVQIIRMAAEEFTQAMNGVRSFNRLEGIDLTSYECETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D+ TV MVQAYP ILYISCNP +L +L LS TH + RLALFDQFPYT HMECGVLL R Sbjct: 306 DEETVKMVQAYPRILYISCNPQTLSDNLQTLSETHEVTRLALFDQFPYTHHMECGVLLTR 365 Query: 365 K 365 K Sbjct: 366 K 366 >gi|261819553|ref|YP_003257659.1| tRNA (uracil-5-)-methyltransferase [Pectobacterium wasabiae WPP163] gi|261603566|gb|ACX86052.1| tRNA (uracil-5-)-methyltransferase [Pectobacterium wasabiae WPP163] Length = 367 Score = 500 bits (1287), Expect = e-139, Method: Compositional matrix adjust. Identities = 236/361 (65%), Positives = 288/361 (79%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L I+ Y+ QLAEK +RLR MM F P +FRS HYRMRAEF IWHDGD+LYHIMFD Sbjct: 6 LPIEDYDDQLAEKTERLRGMMAPFNAPEPVVFRSPVSHYRMRAEFRIWHDGDELYHIMFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTK+R+R+D F S LIN LM +++A I+ + +LR KLFQIDYL++ S + IV+L+YH Sbjct: 66 QQTKQRIRVDKFPAASELINRLMPKLLAAIQPDSVLRRKLFQIDYLSTLSGEVIVSLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 R L++ W+E A LRD+L A+ + +QLIGRA KTKICLDRDYVDE L VAGR +IYRQ+E Sbjct: 126 RPLNEEWQEHACALRDSLTAQGFNLQLIGRATKTKICLDRDYVDECLPVAGRNMIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+ MLEW L AT +GDLLELYCGNGNFSL LAR+F+RVLA EIAKPSV Sbjct: 186 NSFTQPNAAVNIKMLEWALDATASSKGDLLELYCGNGNFSLALARNFERVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNI AN + NV+I+RM+++EFTQAM+ R+F RL+ ID+ SY+ +TIFVDPPRSGL Sbjct: 246 AAAQYNITANQIENVQIIRMAAEEFTQAMQGVRQFKRLQGIDLTSYQCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 DD TV +VQAYP ILYISCNP++L +L LS TH I RLALFDQFPYT HMECGVLL + Sbjct: 306 DDETVKLVQAYPRILYISCNPETLSNNLQTLSETHDIRRLALFDQFPYTHHMECGVLLEK 365 Query: 365 K 365 + Sbjct: 366 R 366 >gi|237728078|ref|ZP_04558559.1| tRNA (uracil-5-)-methyltransferase [Citrobacter sp. 30_2] gi|226910335|gb|EEH96253.1| tRNA (uracil-5-)-methyltransferase [Citrobacter sp. 30_2] Length = 366 Score = 499 bits (1284), Expect = e-139, Method: Compositional matrix adjust. Identities = 233/361 (64%), Positives = 284/361 (78%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L +QY+ QLAEKV RL+ +M F ++FRS HYRMRAEF +WHDGDDLYHIMFD Sbjct: 6 LPTEQYDAQLAEKVVRLQSLMTPFYAQAPEVFRSPVSHYRMRAEFRLWHDGDDLYHIMFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QTK R+R+D F S LIN LM M+ +R +LR KLFQIDYLT+ S QA+V+++YH Sbjct: 66 SQTKNRIRVDSFPAASELINTLMTAMIEGVRNNYVLRHKLFQIDYLTTLSGQAVVSMLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + LDD WR+ A LRDAL A+ + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E Sbjct: 126 KKLDDEWRQEAEALRDALRAKNLNVHLIGRATKTKIELDQDYIDERLPVAGKEIIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+ MLEW + T+G +GDLLELYCGNGNFSL LA++F+RVLA EIAKPSV Sbjct: 186 NSFTQPNAAMNIQMLEWAIDVTRGSKGDLLELYCGNGNFSLALAQNFNRVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAAN + NV+I+RM+++EFTQAM REFNRL+ ID+ SY+ +TIFVDPPRSGL Sbjct: 246 AAAQYNIAANQIENVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D T MVQAYP ILYISCNP++LC++L LS TH + RLALFDQFPYT HMECGVLL + Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHNVSRLALFDQFPYTHHMECGVLLTK 365 Query: 365 K 365 K Sbjct: 366 K 366 >gi|269140813|ref|YP_003297514.1| tRNA (uracil-5-)-methyltransferase [Edwardsiella tarda EIB202] gi|267986474|gb|ACY86303.1| tRNA (uracil-5-)-methyltransferase [Edwardsiella tarda EIB202] gi|304560573|gb|ADM43237.1| tRNA (Uracil54-C5-)-methyltransferase [Edwardsiella tarda FL6-60] Length = 366 Score = 499 bits (1284), Expect = e-139, Method: Compositional matrix adjust. Identities = 238/361 (65%), Positives = 285/361 (78%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L + Y+ QL+EK+ RL QMM F P +Q FRS HYRMRAEF IWHDGDDLYHIMFD Sbjct: 6 LPTEHYDDQLSEKIHRLEQMMQPFGAPAVQAFRSPASHYRMRAEFRIWHDGDDLYHIMFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 Q+K+R+R+D F S LIN LM ++ +R P LR KLFQIDYL+++S Q IV+L+YH Sbjct: 66 PQSKQRIRVDRFPAASELINRLMPLLLDALRPNPTLRHKLFQIDYLSTRSGQIIVSLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 R LDDAW++ A LRDAL + + IQLIGRA+KTKICLD+D+VDE L VAGR +IYRQ+E Sbjct: 126 RALDDAWKQAAEALRDALRGQGFAIQLIGRASKTKICLDQDWVDEVLPVAGRQMIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA IN+ MLEW L AT+G GDLLELYCGNGNFSL LAR+F RVLA EIAKPSV Sbjct: 186 NSFTQPNAAINIQMLEWALDATRGAVGDLLELYCGNGNFSLALARNFRRVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNI+AN ++NV+I+RMS++EFTQAM+ R FNRL+ ID+HSY TIFVDPPRSGL Sbjct: 246 AAAQYNISANQIDNVQIIRMSAEEFTQAMQGVRAFNRLQGIDLHSYECNTIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D T+ MVQ Y +ILYISCNP +LC +L L+ +H I RLALFDQFPYT HMECGVLL R Sbjct: 306 DTDTLSMVQGYQNILYISCNPLTLCDNLHTLTQSHRITRLALFDQFPYTHHMECGVLLER 365 Query: 365 K 365 + Sbjct: 366 R 366 >gi|238754702|ref|ZP_04616054.1| tRNA (uracil-5-)-methyltransferase [Yersinia ruckeri ATCC 29473] gi|238707010|gb|EEP99375.1| tRNA (uracil-5-)-methyltransferase [Yersinia ruckeri ATCC 29473] Length = 367 Score = 498 bits (1283), Expect = e-139, Method: Compositional matrix adjust. Identities = 234/361 (64%), Positives = 284/361 (78%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L + Y+ QLAEK+ L++MM F+ P ++FRS HYRMRAEF +WHD DDLYHIMFD Sbjct: 6 LPTENYDHQLAEKIASLKEMMSPFKAPEPEVFRSPAEHYRMRAEFRVWHDEDDLYHIMFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 Q TK+R+R++ F S+LIN LM +M IR +P+LR KLFQIDYL+++S + I +L+YH Sbjct: 66 QHTKQRIRVEQFPVASVLINRLMSALMTAIRAQPILRRKLFQIDYLSTRSGKIIASLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 R LD+ W++ AI LRD L + +QLIGRA KTKI LD DYVDE L VAGR +IYRQ+E Sbjct: 126 RQLDEEWQQHAIALRDQLRTEGFDLQLIGRAAKTKIMLDNDYVDEILPVAGRDMIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+HMLEW L TK GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV Sbjct: 186 NSFTQPNAAVNIHMLEWALDVTKDASGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA++NIAANH++NV+I+RMS++EFTQAM+ REFNRLK ID+ SY +TIFVDPPRSGL Sbjct: 246 AAAQFNIAANHIDNVQIIRMSAEEFTQAMQGVREFNRLKGIDLQSYHCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 DD T+ MVQ YP ILYISCNP++L +L L THTI RLALFDQFPYT HMECGV L + Sbjct: 306 DDETIKMVQGYPRILYISCNPETLSANLEQLQHTHTISRLALFDQFPYTHHMECGVWLEK 365 Query: 365 K 365 + Sbjct: 366 R 366 >gi|238750874|ref|ZP_04612372.1| tRNA (uracil-5-)-methyltransferase [Yersinia rohdei ATCC 43380] gi|238711018|gb|EEQ03238.1| tRNA (uracil-5-)-methyltransferase [Yersinia rohdei ATCC 43380] Length = 367 Score = 496 bits (1278), Expect = e-138, Method: Compositional matrix adjust. Identities = 233/356 (65%), Positives = 283/356 (79%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69 YE QLAEK RL+ MML FQ P +IFRS HYRMRAEF +WHD DLYHIMFDQQTK+ Sbjct: 11 YEHQLAEKSARLQAMMLPFQAPAPEIFRSPAEHYRMRAEFRVWHDEGDLYHIMFDQQTKQ 70 Query: 70 RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDD 129 R+R++ F S LIN+LM +M IR EP+LR KLFQIDYL++ S + + +L+YHR LD+ Sbjct: 71 RIRVEQFPVASRLINSLMNVLMTAIRAEPILRRKLFQIDYLSTLSGKLVASLLYHRQLDE 130 Query: 130 AWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQ 189 W++ A LRD L A+ + +QLIGRA+KTKI LD DY+DE L +AGR +IYRQ+ENSFTQ Sbjct: 131 EWQQKARELRDQLRAQGFDLQLIGRASKTKIMLDHDYIDEVLPIAGREMIYRQVENSFTQ 190 Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249 PNA +N+HMLEW + T+ GDLLELYCGNGNFSL LAR+F+RVLA EIAKPSV AA+Y Sbjct: 191 PNAAVNIHMLEWAIDVTQDASGDLLELYCGNGNFSLALARNFNRVLATEIAKPSVAAAQY 250 Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309 NIAANH++NV+I+RMS++EFTQAM+ REF RL+ ID+ SY +TIFVDPPRSGLDD TV Sbjct: 251 NIAANHIDNVQIIRMSAEEFTQAMQGVREFRRLQGIDLSSYNCETIFVDPPRSGLDDETV 310 Query: 310 GMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 +VQ YP ILYISCNP++LC +L L TH I RLALFDQFPYT HMECGVLL ++ Sbjct: 311 KLVQTYPRILYISCNPETLCANLEQLQHTHKISRLALFDQFPYTHHMECGVLLEKR 366 >gi|293393499|ref|ZP_06637809.1| tRNA (uracil-5-)-methyltransferase [Serratia odorifera DSM 4582] gi|291423834|gb|EFE97053.1| tRNA (uracil-5-)-methyltransferase [Serratia odorifera DSM 4582] Length = 367 Score = 491 bits (1263), Expect = e-137, Method: Compositional matrix adjust. Identities = 234/362 (64%), Positives = 283/362 (78%) Query: 4 TLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63 L I++Y++QL EK RL MM F P ++FRS HYRMRAEF IWHD D++YHIMF Sbjct: 5 NLPIERYDEQLTEKTQRLASMMSPFGAPEPEVFRSPVSHYRMRAEFRIWHDDDEMYHIMF 64 Query: 64 DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIY 123 DQQTK+R+R+D F S LIN LM ++A I+ +P+LR KLFQIDYL+++S + I +L+Y Sbjct: 65 DQQTKQRIRVDRFPAASELINRLMTALIAAIKPQPVLRRKLFQIDYLSTRSGKIIASLLY 124 Query: 124 HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQI 183 HR LDD W+ A +LRD L A+ + +QLIGRA+K KI LD DY+DE L VAGR +IYRQ+ Sbjct: 125 HRKLDDEWQRHAEQLRDDLRAQGFDLQLIGRASKMKITLDHDYIDEVLPVAGRDMIYRQV 184 Query: 184 ENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 ENSFTQPNA INV MLEW L T+ +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPS Sbjct: 185 ENSFTQPNAAINVAMLEWALDVTRHAKGDLLELYCGNGNFSLALARNFDRVLATEIAKPS 244 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 V AA+YNIAAN V+NV+I+RM+++EFTQAM R FNRL+ ID+ SY +TIFVDPPRSG Sbjct: 245 VAAAQYNIAANQVDNVQIIRMAAEEFTQAMNGVRSFNRLQGIDLSSYNCETIFVDPPRSG 304 Query: 304 LDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363 LDD TV MVQAYP ILYISCNP++L +L L TH I RLALFDQFPYT HMECGVLL Sbjct: 305 LDDETVKMVQAYPRILYISCNPETLSANLDTLQATHDITRLALFDQFPYTHHMECGVLLE 364 Query: 364 RK 365 ++ Sbjct: 365 KR 366 >gi|317494786|ref|ZP_07953198.1| tRNA (uracil-5-)-methyltransferase [Enterobacteriaceae bacterium 9_2_54FAA] gi|316917388|gb|EFV38735.1| tRNA (uracil-5-)-methyltransferase [Enterobacteriaceae bacterium 9_2_54FAA] Length = 367 Score = 490 bits (1262), Expect = e-136, Method: Compositional matrix adjust. Identities = 229/363 (63%), Positives = 283/363 (77%) Query: 3 GTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIM 62 TL DQY+ QL EK+ RL MM F P ++ FRS HYRMRAEF +WHD DLYHIM Sbjct: 4 NTLPTDQYDAQLTEKITRLANMMTPFAAPEIEAFRSPASHYRMRAEFRVWHDESDLYHIM 63 Query: 63 FDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122 FDQQTK+R+R+D F S LIN LM MM +R +LR KLFQIDYL++ +++ +V+L+ Sbjct: 64 FDQQTKQRIRVDQFPAASELINRLMTVMMDELRPNQVLRFKLFQIDYLSTMNNKVVVSLL 123 Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182 YHR LD+ W+ A LRD L + + IQLIGRA KTKICLD+DYVDE L VAGR ++YRQ Sbjct: 124 YHRKLDEEWKAQAEALRDRLRTQGFDIQLIGRATKTKICLDQDYVDECLPVAGRDMVYRQ 183 Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 +ENSFTQPNA +N+ MLEW L TK +GDLLELYCGNGNFSL LAR+F+RVLA EIAKP Sbjct: 184 VENSFTQPNAAVNIKMLEWALDVTKNSKGDLLELYCGNGNFSLALARNFNRVLATEIAKP 243 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302 SV AA++NI+ANH++NV+I+RM++++FTQAM REF RL+ ID+ SY+ +TIFVDPPRS Sbjct: 244 SVAAAQFNISANHIDNVQIIRMAAEDFTQAMNGVREFKRLEGIDLKSYQCETIFVDPPRS 303 Query: 303 GLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362 GLDD T+ MVQAYP ILYISCNP++L +L L TH ++RLALFDQFPYT HMECGVLL Sbjct: 304 GLDDDTLRMVQAYPRILYISCNPETLSANLETLHETHQVKRLALFDQFPYTHHMECGVLL 363 Query: 363 VRK 365 ++ Sbjct: 364 EKR 366 >gi|37528553|ref|NP_931898.1| tRNA (uracil-5-)-methyltransferase [Photorhabdus luminescens subsp. laumondii TTO1] gi|50401483|sp|Q7MAX6|TRMA_PHOLL RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|36787991|emb|CAE17108.1| tRNA (Uracil-5-)-methyltransferase [Photorhabdus luminescens subsp. laumondii TTO1] Length = 366 Score = 486 bits (1251), Expect = e-135, Method: Compositional matrix adjust. Identities = 227/362 (62%), Positives = 286/362 (79%) Query: 1 MSGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60 M L + YEQQL EKV RL+ MM FQ P ++FRS HYRMRAEF IWH+ DDLYH Sbjct: 1 MQNLLPTESYEQQLTEKVSRLKNMMAPFQPPRPEVFRSPLSHYRMRAEFRIWHEQDDLYH 60 Query: 61 IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVT 120 IMFDQQTK+R+R+ F S LIN +M+ ++ +IR E +L KLFQIDYL++ S++ +V+ Sbjct: 61 IMFDQQTKQRIRLVQFPVASKLINKMMVVLIDSIRSEQILCHKLFQIDYLSTCSNKILVS 120 Query: 121 LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIY 180 L+YH+ L + W + A+RLR+AL + + ++LIGRA KTKI LD DY+DE L VAGR +IY Sbjct: 121 LLYHKKLGEEWTQQALRLREALRHKGFDVELIGRAAKTKITLDHDYIDEVLPVAGRKMIY 180 Query: 181 RQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240 RQ+ENSFTQPNA +N+HMLEW + TK +GDLLELYCGNGNFSL LA++F+RVLA EIA Sbjct: 181 RQVENSFTQPNASVNIHMLEWAINITKDSKGDLLELYCGNGNFSLALAQNFERVLATEIA 240 Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300 KPSV AA+YNI AN ++NV+I+RMS++EFTQAM EREFNRL+ I++ SY+ +TIFVDPP Sbjct: 241 KPSVAAAQYNITANGIDNVQIIRMSAEEFTQAMNGEREFNRLQGINLKSYQCETIFVDPP 300 Query: 301 RSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360 RSGLD+ T+ MV+AYP ILYISCNP++LC +L L+ TH I LALFDQFPYT HMECGV Sbjct: 301 RSGLDEKTLEMVRAYPRILYISCNPETLCHNLETLTQTHKISHLALFDQFPYTHHMECGV 360 Query: 361 LL 362 LL Sbjct: 361 LL 362 >gi|213857560|ref|ZP_03384531.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 352 Score = 483 bits (1244), Expect = e-134, Method: Compositional matrix adjust. Identities = 229/347 (65%), Positives = 275/347 (79%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L +QYE QLAEKV RL+ MM F ++FRS HYRMRAEF +WHDGD+LYHIMFD Sbjct: 6 LPTEQYEAQLAEKVARLQSMMAPFSGLVPEVFRSPVSHYRMRAEFRLWHDGDNLYHIMFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTK R+R+D F S LIN LM M+A +R LR KLFQIDYLT+ S+QA+V+L+YH Sbjct: 66 QQTKSRIRVDTFPAASQLINTLMKAMIAGVRDNHALRHKLFQIDYLTTLSNQAVVSLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + LD+ WRE A LRDAL A+ + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E Sbjct: 126 KKLDEEWREAATALRDALRAQGLNVHLIGRATKTKIELDQDYIDERLPVAGKEIIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+ MLEW L TK +GDLLELYCGNGNFSL LAR+F+RVLA EIAKPSV Sbjct: 186 NSFTQPNAAMNIQMLEWALEVTKDSKGDLLELYCGNGNFSLALARNFNRVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAANH++NV+I+RM+++EFTQAM REFNRL+ ID+ Y+ +TIFVDPPRSGL Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKRYQCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFP 351 D T MVQAYP ILYISCNP++LC++L LS THT+ RLALFDQFP Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHTVSRLALFDQFP 352 >gi|322834974|ref|YP_004215001.1| tRNA (uracil-5-)-methyltransferase [Rahnella sp. Y9602] gi|321170175|gb|ADW75874.1| tRNA (uracil-5-)-methyltransferase [Rahnella sp. Y9602] Length = 366 Score = 478 bits (1231), Expect = e-133, Method: Compositional matrix adjust. Identities = 228/359 (63%), Positives = 274/359 (76%) Query: 4 TLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63 L I+ Y+ QLAEK RL MM + P +FRS HYRMRAEF +WHD DLYHIMF Sbjct: 5 NLPIEHYDDQLAEKTARLTAMMSPYNAPQPDVFRSPVSHYRMRAEFRVWHDEGDLYHIMF 64 Query: 64 DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIY 123 DQQTK R+R+D F S LIN LM +++A I+ +P LR K+FQIDYL+++S + I +L+Y Sbjct: 65 DQQTKARVRVDQFPTASELINRLMPKLIAAIKQDPALRRKIFQIDYLSTRSGKIIASLLY 124 Query: 124 HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQI 183 HR LDD W++ A LRD L A + IQLIGRA KTKI LD+DYVDE L VAGR +IYRQ+ Sbjct: 125 HRKLDDEWQQAATALRDQLRADGFDIQLIGRAAKTKIMLDQDYVDEVLPVAGRDMIYRQV 184 Query: 184 ENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 ENSFTQPNA +N+ MLEW L AT+ GDLLELYCGNGNFSL LAR+F RVLA EIAKPS Sbjct: 185 ENSFTQPNAEMNIQMLEWALKATENSTGDLLELYCGNGNFSLALARNFRRVLATEIAKPS 244 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 V AA++NIAANH++NV+I+RM++++FTQA+ REF RL+DID+ Y TIFVDPPRSG Sbjct: 245 VTAAQFNIAANHIDNVQIIRMAAEDFTQALNGVREFRRLQDIDLSGYECNTIFVDPPRSG 304 Query: 304 LDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362 LDD TV MV Y ILYISCNP++LC +L LS TH + RLALFDQFPYT HME GVLL Sbjct: 305 LDDETVKMVAGYDRILYISCNPETLCANLETLSKTHRVTRLALFDQFPYTHHMESGVLL 363 >gi|197287058|ref|YP_002152930.1| tRNA (uracil-5-)-methyltransferase [Proteus mirabilis HI4320] gi|262827918|sp|B4F1H4|TRMA_PROMH RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|194684545|emb|CAR46359.1| tRNA (uracil-5)-methyltransferase [Proteus mirabilis HI4320] Length = 365 Score = 475 bits (1223), Expect = e-132, Method: Compositional matrix adjust. Identities = 219/365 (60%), Positives = 282/365 (77%) Query: 1 MSGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60 M +L Y+ QL EK +RL++MM F PN+++F S HYRMRAEF IWH+ D LYH Sbjct: 1 MQNSLPTQTYQSQLNEKTERLQKMMAPFNAPNVEVFSSPEQHYRMRAEFRIWHEQDALYH 60 Query: 61 IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVT 120 IMFDQ+TK+R+R+D F S LIN +M+ ++A I+ +P LR KLFQIDYL++ S++ IV+ Sbjct: 61 IMFDQETKQRIRVDQFPVASQLINQMMVALLAEIKDKPTLRHKLFQIDYLSTLSNKIIVS 120 Query: 121 LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIY 180 L+YH+ +D+ W++ A LR L A+ + +QLIGRA KTKI LD D+VDE L VAG+ +IY Sbjct: 121 LLYHKKIDETWQQEATALRQTLIAQGFDVQLIGRAYKTKIMLDNDFVDEVLPVAGQQMIY 180 Query: 181 RQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240 RQ+ENSFTQPNA +N+ MLEW L+ T+ GDLLELYCGNGNFSL LAR+F RVLA EIA Sbjct: 181 RQVENSFTQPNAQVNIKMLEWALSVTENSTGDLLELYCGNGNFSLALARNFKRVLATEIA 240 Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300 KPSV AA+YNIA NH++NVKI+RMS+++FTQAM REF RL+ I++ Y+ +TIFVDPP Sbjct: 241 KPSVHAAQYNIAMNHIDNVKIIRMSAEDFTQAMNGVREFKRLEGINLQDYQCETIFVDPP 300 Query: 301 RSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360 RSGLD+ TV +V+ Y ILYISCNP +LC++L L TH I +LALFDQFPYT HMECGV Sbjct: 301 RSGLDEKTVELVKNYSRILYISCNPQTLCQNLETLIKTHKISKLALFDQFPYTHHMECGV 360 Query: 361 LLVRK 365 LL ++ Sbjct: 361 LLEKR 365 >gi|227354694|ref|ZP_03839113.1| tRNA (uracil-5)-methyltransferase [Proteus mirabilis ATCC 29906] gi|227165204|gb|EEI50029.1| tRNA (uracil-5)-methyltransferase [Proteus mirabilis ATCC 29906] Length = 393 Score = 474 bits (1219), Expect = e-131, Method: Compositional matrix adjust. Identities = 219/365 (60%), Positives = 282/365 (77%) Query: 1 MSGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60 M +L Y+ QL EK +RL++MM F PN+++F S HYRMRAEF IWH+ D LYH Sbjct: 29 MQNSLPTQTYQSQLNEKTERLQKMMAPFNAPNVEVFSSPEQHYRMRAEFRIWHEQDALYH 88 Query: 61 IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVT 120 IMFDQ+TK+R+R+D F S LIN +M+ ++A I+ +P LR KLFQIDYL++ S++ IV+ Sbjct: 89 IMFDQETKQRIRVDQFPVASQLINQMMVALLAEIKDKPTLRHKLFQIDYLSTLSNKIIVS 148 Query: 121 LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIY 180 L+YH+ +D+ W++ A LR L A+ + +QLIGRA KTKI LD D+VDE L VAG+ +IY Sbjct: 149 LLYHKKIDETWQQEATALRQTLIAQGFDVQLIGRAYKTKIMLDNDFVDEILPVAGQQMIY 208 Query: 181 RQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240 RQ+ENSFTQPNA +N+ MLEW L+ T+ GDLLELYCGNGNFSL LAR+F RVLA EIA Sbjct: 209 RQVENSFTQPNAQVNIKMLEWALSVTENSTGDLLELYCGNGNFSLALARNFKRVLATEIA 268 Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300 KPSV AA+YNIA NH++NVKI+RMS+++FTQAM REF RL+ I++ Y+ +TIFVDPP Sbjct: 269 KPSVHAAQYNIAMNHIDNVKIIRMSAEDFTQAMNGVREFKRLEGINLQDYQCETIFVDPP 328 Query: 301 RSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360 RSGLD+ TV +V+ Y ILYISCNP +LC++L L TH I +LALFDQFPYT HMECGV Sbjct: 329 RSGLDEKTVELVKNYSRILYISCNPQTLCQNLETLIKTHKISKLALFDQFPYTHHMECGV 388 Query: 361 LLVRK 365 LL ++ Sbjct: 389 LLEKR 393 >gi|188025467|ref|ZP_02958774.2| hypothetical protein PROSTU_00526 [Providencia stuartii ATCC 25827] gi|188023296|gb|EDU61336.1| hypothetical protein PROSTU_00526 [Providencia stuartii ATCC 25827] Length = 367 Score = 473 bits (1216), Expect = e-131, Method: Compositional matrix adjust. Identities = 221/358 (61%), Positives = 281/358 (78%) Query: 8 DQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQT 67 + YE QLAEKV+RL+ MM + ++F S HYRMRAEF +WHDGDDL+HIMFD++T Sbjct: 10 EHYELQLAEKVERLKTMMAPYTAMEPEVFTSPESHYRMRAEFRVWHDGDDLFHIMFDKET 69 Query: 68 KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLL 127 KER+RID F S LIN +M E++ I+ LLR KLFQIDYL++ S++ IV+L+YH+ L Sbjct: 70 KERVRIDQFPVASQLINNIMAEILPLIKENALLRHKLFQIDYLSTLSNKLIVSLLYHKKL 129 Query: 128 DDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSF 187 + W E A +L+ L + + +QLIGRA+KTKI LD DYVDE L V G+ +IYRQ+ENSF Sbjct: 130 TEEWIEAAKQLKTTLINKGFDLQLIGRASKTKIMLDNDYVDEILPVNGKNMIYRQVENSF 189 Query: 188 TQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA 247 TQPNA +N+ MLEW + AT+G GDLLELYCGNGNFSL LA++F+RVLA EIAKPSV AA Sbjct: 190 TQPNAQVNIKMLEWAIDATQGATGDLLELYCGNGNFSLALAQNFERVLATEIAKPSVAAA 249 Query: 248 RYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307 +YNIAAN ++NV+I+RMS+++FTQAMR REF RL I++ Y+ TIFVDPPRSGLDD Sbjct: 250 QYNIAANQIDNVQIIRMSAEDFTQAMRGVREFKRLDGINLADYQCNTIFVDPPRSGLDDK 309 Query: 308 TVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 TV +VQ Y +ILYISCNP++LC +LS+L+ TH I++LALFDQFPYT HME GVLL R+ Sbjct: 310 TVQLVQEYDNILYISCNPETLCDNLSVLNATHKIKKLALFDQFPYTHHMESGVLLTRR 367 >gi|212712482|ref|ZP_03320610.1| hypothetical protein PROVALCAL_03577 [Providencia alcalifaciens DSM 30120] gi|212684698|gb|EEB44226.1| hypothetical protein PROVALCAL_03577 [Providencia alcalifaciens DSM 30120] Length = 366 Score = 473 bits (1216), Expect = e-131, Method: Compositional matrix adjust. Identities = 221/365 (60%), Positives = 284/365 (77%) Query: 1 MSGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60 M TL + Y+ QLAEKVDRL+ +M + P +IF S HYRMRAEF IWH+GDDL+H Sbjct: 2 MQNTLHTEDYQLQLAEKVDRLKSLMAPYAAPEPEIFSSPTSHYRMRAEFRIWHEGDDLFH 61 Query: 61 IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVT 120 IMFD++TKER+R+ F S LIN +M E++ ++ LLR KLFQIDYL++ S++ IV+ Sbjct: 62 IMFDKETKERIRMTSFPVASQLINDMMAELLPLLKRTELLRHKLFQIDYLSTLSNKLIVS 121 Query: 121 LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIY 180 L+YH+ L D W E A +L++ L A+ + +Q+IGRA+KTKI LD DYVDE L V G+ ++Y Sbjct: 122 LLYHKKLGDEWTEQAKQLKEDLVAKGFDVQIIGRASKTKIMLDHDYVDEILPVKGKDMVY 181 Query: 181 RQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240 RQ+ENSFTQPNA +N+ MLEW + AT+ GDLLELYCGNGNFSL LA++F++VLA EIA Sbjct: 182 RQVENSFTQPNAQVNIKMLEWAIDATQHSTGDLLELYCGNGNFSLALAQNFNKVLATEIA 241 Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300 KPSV AA+YNI AN +NNV+I+RMS+++FTQAM REFNRL+ I++ Y+ TIFVDPP Sbjct: 242 KPSVHAAQYNIEANKINNVQIIRMSAEDFTQAMNGVREFNRLEGINLADYQCNTIFVDPP 301 Query: 301 RSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360 RSGLDD TV +VQ Y HILYISCNP++LC +L+ L+ TH IE+LALFDQFPYT HME GV Sbjct: 302 RSGLDDKTVQLVQEYDHILYISCNPETLCDNLAELTKTHRIEKLALFDQFPYTHHMESGV 361 Query: 361 LLVRK 365 LL R+ Sbjct: 362 LLTRR 366 >gi|261346835|ref|ZP_05974479.1| tRNA (uracil-5-)-methyltransferase [Providencia rustigianii DSM 4541] gi|282565014|gb|EFB70549.1| tRNA (uracil-5-)-methyltransferase [Providencia rustigianii DSM 4541] Length = 365 Score = 470 bits (1210), Expect = e-130, Method: Compositional matrix adjust. Identities = 217/365 (59%), Positives = 284/365 (77%) Query: 1 MSGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60 M TL + YE QLAEK++RL+ +M + P ++F S HYRMRAEF IWHDGDDL+H Sbjct: 1 MQNTLHTEDYELQLAEKINRLKSLMAPYAAPEPEVFSSSKSHYRMRAEFRIWHDGDDLFH 60 Query: 61 IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVT 120 IMFD++TKER+RI+ F S LIN +M+E++ ++ LLR KLFQIDYL++ S++ I++ Sbjct: 61 IMFDKETKERIRIESFPVASQLINDMMVELLPLLKKSELLRHKLFQIDYLSTLSNKLIIS 120 Query: 121 LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIY 180 L+YH+ L D W A +L+ L A+ + +Q+IGRA+KTKI LD DYVDE L V G+ +IY Sbjct: 121 LLYHKKLGDEWITEAKQLKADLIAKGFDVQVIGRASKTKIMLDHDYVDEILPVNGKEMIY 180 Query: 181 RQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240 RQ+ENSFTQPNA +N+ MLEW + AT+ GDLLELYCGNGNFSL LA++F++VLA EIA Sbjct: 181 RQVENSFTQPNAQVNIKMLEWAINATQNSTGDLLELYCGNGNFSLALAQNFNKVLATEIA 240 Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300 KPSV+AA+YNI AN ++NV+I+RMS+++FTQAM+ REF RL I++ Y+ TIFVDPP Sbjct: 241 KPSVQAAQYNIEANKIDNVQIIRMSAEDFTQAMKGVREFRRLDGINLADYQCNTIFVDPP 300 Query: 301 RSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360 RSGLDD TV +VQ Y HILYISCNP++LC +L+ L+ TH +E+LALFDQFPYT HME GV Sbjct: 301 RSGLDDKTVQLVQEYDHILYISCNPETLCDNLAELTKTHKVEKLALFDQFPYTHHMESGV 360 Query: 361 LLVRK 365 LL R+ Sbjct: 361 LLTRR 365 >gi|284009190|emb|CBA76252.1| tRNA (uracil-5)-methyltransferase [Arsenophonus nasoniae] Length = 367 Score = 465 bits (1196), Expect = e-129, Method: Compositional matrix adjust. Identities = 215/365 (58%), Positives = 283/365 (77%) Query: 1 MSGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60 M L I QY QL EK+ L +ML + P +IFRS+ +YRMRAEF +WH+G DL+H Sbjct: 1 MLNNLSITQYNSQLTEKIKYLNSIMLPYNAPKPEIFRSDFSYYRMRAEFRLWHEGQDLFH 60 Query: 61 IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVT 120 IMFDQ TK+R+RID LIN +M+ ++ I+ + +LR KLFQ+DYL++ S++ IV+ Sbjct: 61 IMFDQTTKQRIRIDQLPIACKLINQMMVALIPLIKSKSVLRYKLFQVDYLSTLSNKIIVS 120 Query: 121 LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIY 180 LIYH+ L++ W E A +LR AL + + IQLIGRA KTKI L++D++DE L +AG+++IY Sbjct: 121 LIYHKKLNEEWIEQAKQLRIALINQGFDIQLIGRAAKTKIILEQDHIDEVLPIAGKSIIY 180 Query: 181 RQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240 RQIENSFTQPNAGIN+ MLEW + TK +GDLLELYCGNGNFS+ LA++F+R+LA EIA Sbjct: 181 RQIENSFTQPNAGINIKMLEWAIDCTKNAKGDLLELYCGNGNFSIALAQNFNRILATEIA 240 Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300 KPSV AA+YNI AN +NNVKI+RMS+++FTQA++ ER+F RL+ +D+ SY+ TI +DPP Sbjct: 241 KPSVAAAQYNIEANKINNVKIIRMSAEDFTQAIQGERQFRRLEGVDLMSYKCNTILIDPP 300 Query: 301 RSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360 R GLD+ TV +VQ YP ILYISCNP++LC +L+IL+ TH I RLALFDQFPYT H+ECGV Sbjct: 301 RCGLDEKTVALVQKYPRILYISCNPNTLCHNLNILNKTHKIHRLALFDQFPYTHHIECGV 360 Query: 361 LLVRK 365 LL K Sbjct: 361 LLENK 365 >gi|291327277|ref|ZP_06127642.2| tRNA (uracil-5-)-methyltransferase [Providencia rettgeri DSM 1131] gi|291311120|gb|EFE51573.1| tRNA (uracil-5-)-methyltransferase [Providencia rettgeri DSM 1131] Length = 369 Score = 460 bits (1183), Expect = e-127, Method: Compositional matrix adjust. Identities = 220/364 (60%), Positives = 277/364 (76%) Query: 1 MSGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60 M TL + YEQQL EK DRL+ MM F P +IF S HYRMRAEF IWH+GDDL+H Sbjct: 5 MPNTLHTEDYEQQLVEKTDRLKAMMAPFNAPEPEIFSSPTSHYRMRAEFRIWHEGDDLFH 64 Query: 61 IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVT 120 IMF+++TKER+RID F S LIN +M ++ I+ LLR KLFQIDYL++ S++ IV+ Sbjct: 65 IMFNKETKERIRIDQFPVASQLINDMMAALLPLIKQNELLRHKLFQIDYLSTLSNKLIVS 124 Query: 121 LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIY 180 L+YH+ L + W A L+ AL + + +QLIGRA+KTKI LD DYVDE L V G+ ++Y Sbjct: 125 LLYHKKLGEEWMAEAKALKAALVEQGFDVQLIGRASKTKIMLDNDYVDEVLPVMGKNMVY 184 Query: 181 RQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240 RQ+ENSFTQPNA +N+ MLEW + +T+ GDLLELYCGNGNFSL LA++F+RVLA EIA Sbjct: 185 RQVENSFTQPNAQVNIKMLEWAIESTQNSTGDLLELYCGNGNFSLALAQNFERVLATEIA 244 Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300 KPSV AA+YNI AN++ NV+I+RMS+++FTQAM+ REF RL+ I + Y+ TIFVDPP Sbjct: 245 KPSVAAAQYNIEANNIENVQIIRMSAEDFTQAMQGAREFRRLEGISLADYQCNTIFVDPP 304 Query: 301 RSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360 RSGLD TV +VQ Y HILYISCNP++LC +L+ L+ TH IE+LALFDQFPYT HME GV Sbjct: 305 RSGLDAETVKLVQGYEHILYISCNPETLCDNLAELTKTHKIEKLALFDQFPYTHHMESGV 364 Query: 361 LLVR 364 LL R Sbjct: 365 LLSR 368 >gi|251793563|ref|YP_003008292.1| tRNA (uracil-5-)-methyltransferase [Aggregatibacter aphrophilus NJ8700] gi|262827621|sp|C6AQU6|TRMA_AGGAN RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|247534959|gb|ACS98205.1| tRNA (uracil-5-)-methyltransferase [Aggregatibacter aphrophilus NJ8700] Length = 365 Score = 451 bits (1161), Expect = e-125, Method: Compositional matrix adjust. Identities = 210/362 (58%), Positives = 269/362 (74%) Query: 4 TLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63 L + Y LAEK ++L ++ F PNLQ+F S H+RMRAEF IWH+GDD YHIMF Sbjct: 3 NLPVTHYSALLAEKQEKLTALLAPFNAPNLQVFASPTQHFRMRAEFRIWHEGDDFYHIMF 62 Query: 64 DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIY 123 DQQ+K+R R+D F S LIN +M ++ ++ + +L +LFQIDYL++QS IV+L+Y Sbjct: 63 DQQSKQRYRVDNFPIASELINRMMTALLPLLKQQTVLHHRLFQIDYLSTQSQHIIVSLLY 122 Query: 124 HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQI 183 H+ LD+ W+ A LR L + + +Q++GRA+K KICL++DYVDE L V G+ IYRQ+ Sbjct: 123 HKALDEDWQAAAQTLRSQLQQQGFNVQIVGRASKQKICLEQDYVDEILRVHGKDYIYRQV 182 Query: 184 ENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 ENSFTQPNA +N MLEW + T+ GDLLELYCGNGNFS+ LA++F +VLA EIAKPS Sbjct: 183 ENSFTQPNATVNSKMLEWAVDCTRNSHGDLLELYCGNGNFSIALAQNFRKVLATEIAKPS 242 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 V AA++NIAAN +NN++I+RMS++EFTQAM+ REFNRLK ID+ +Y TIFVDPPR+G Sbjct: 243 VAAAQFNIAANQINNLQIIRMSAEEFTQAMQGVREFNRLKGIDLKAYECNTIFVDPPRAG 302 Query: 304 LDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363 LD TV +VQ Y ILYISCNP +LC +L LS TH IE+ ALFDQFPYT HME GV LV Sbjct: 303 LDADTVKLVQQYERILYISCNPHTLCDNLQTLSQTHRIEKAALFDQFPYTEHMEAGVWLV 362 Query: 364 RK 365 RK Sbjct: 363 RK 364 >gi|315635167|ref|ZP_07890445.1| tRNA (uracil-5-)-methyltransferase [Aggregatibacter segnis ATCC 33393] gi|315476129|gb|EFU66883.1| tRNA (uracil-5-)-methyltransferase [Aggregatibacter segnis ATCC 33393] Length = 368 Score = 451 bits (1160), Expect = e-125, Method: Compositional matrix adjust. Identities = 210/362 (58%), Positives = 270/362 (74%) Query: 4 TLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63 L +D+Y + L EK +L ++ F P+LQ+F S H+RMRAEF IWH+GDD YHIMF Sbjct: 6 NLPVDRYAKLLEEKQQKLTALLSPFDAPDLQVFASPTQHFRMRAEFRIWHEGDDFYHIMF 65 Query: 64 DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIY 123 DQQ+K+R R+D F S LIN +M ++ ++ + +L +LFQIDYL++QS Q IV+L+Y Sbjct: 66 DQQSKQRYRVDNFPITSELINRMMTALLPLLKQQMVLHHRLFQIDYLSTQSQQIIVSLLY 125 Query: 124 HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQI 183 H+ LD+ W+ A LR L + + +Q++GRA+K KICL++DYVDE L V G+ IYRQ+ Sbjct: 126 HKALDENWQTAAQTLRSQLQQQGFNVQIVGRASKQKICLEQDYVDEILQVQGKDYIYRQV 185 Query: 184 ENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 ENSFTQPNA +N MLEW + T+ GDLLELYCGNGNFS+ LA++F +VLA EIAKPS Sbjct: 186 ENSFTQPNAAVNSKMLEWAVDCTRNSHGDLLELYCGNGNFSIALAQNFRKVLATEIAKPS 245 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 V AA++NIAAN V N++I+RMS++EFTQAM+ REFNRLK ID+ +Y TIFVDPPR+G Sbjct: 246 VAAAQFNIAANEVENLQIIRMSAEEFTQAMQGVREFNRLKGIDLKAYECNTIFVDPPRAG 305 Query: 304 LDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363 LD TV +VQ Y ILYISCNP +LC +L LS TH IE+ ALFDQFPYT HME GV LV Sbjct: 306 LDAETVKLVQQYERILYISCNPHTLCDNLKTLSQTHRIEKAALFDQFPYTEHMEAGVWLV 365 Query: 364 RK 365 RK Sbjct: 366 RK 367 >gi|261866761|ref|YP_003254683.1| tRNA (uracil-5-)-methyltransferase [Aggregatibacter actinomycetemcomitans D11S-1] gi|261412093|gb|ACX81464.1| tRNA (uracil-5-)-methyltransferase [Aggregatibacter actinomycetemcomitans D11S-1] Length = 365 Score = 449 bits (1155), Expect = e-124, Method: Compositional matrix adjust. Identities = 209/362 (57%), Positives = 270/362 (74%) Query: 4 TLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63 L +++Y LAEK +L + F P LQ+F S H+RMRAEF IWH+ DD YHIMF Sbjct: 3 NLPVERYSALLAEKQKKLTALFAPFNAPELQVFASPTQHFRMRAEFRIWHEQDDFYHIMF 62 Query: 64 DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIY 123 DQQ+K+R R+D F + L+N +M ++ ++ + +L KLFQIDYL++QS Q IV+L+Y Sbjct: 63 DQQSKQRYRVDCFPIANELVNRMMTALLPLLKQQIVLHHKLFQIDYLSTQSQQIIVSLLY 122 Query: 124 HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQI 183 H+ LDDAW+ A LR LH + + +QLIGRA+K KICL++DYVDE L+V G+ IYRQ+ Sbjct: 123 HKTLDDAWQTAARTLRSQLHQQGFNVQLIGRASKQKICLEQDYVDEILSVHGKQYIYRQV 182 Query: 184 ENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 ENSF QPNA +N MLEW + T+ GDLLELYCGNGNFS+ LA++F +VLA EIAKPS Sbjct: 183 ENSFIQPNAAVNSKMLEWAVDCTRNSHGDLLELYCGNGNFSITLAQNFRQVLATEIAKPS 242 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 V AA++NIAAN V N++I+RMS++EFTQAM+ R FNRLK ID+ +Y+ TIFVDPPR+G Sbjct: 243 VAAAQFNIAANKVENLQIIRMSAEEFTQAMQGVRAFNRLKGIDLTAYQCNTIFVDPPRAG 302 Query: 304 LDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363 LD+ T+ +VQ Y +LYISCNP +LC +L IL TH IE+ ALFDQFPYT HME GV LV Sbjct: 303 LDNETLKLVQQYERVLYISCNPHTLCDNLQILCQTHRIEKAALFDQFPYTEHMEAGVWLV 362 Query: 364 RK 365 RK Sbjct: 363 RK 364 >gi|332289572|ref|YP_004420424.1| hypothetical protein UMN179_01510 [Gallibacterium anatis UMN179] gi|330432468|gb|AEC17527.1| hypothetical protein UMN179_01510 [Gallibacterium anatis UMN179] Length = 365 Score = 448 bits (1153), Expect = e-124, Method: Compositional matrix adjust. Identities = 209/356 (58%), Positives = 276/356 (77%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69 Y QQL +KV L Q++ F +++ RS HYRMRAEF +WHDGDDLYHIMFD ++K Sbjct: 10 YNQQLEDKVYYLTQLLKPFFQGEIKVHRSALKHYRMRAEFRVWHDGDDLYHIMFDPKSKR 69 Query: 70 RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDD 129 R RID F S LINA+M ++ ++ +P+LR +LFQIDYL++ S++ IV+L+YH+ LD+ Sbjct: 70 RYRIDQFPIASTLINAIMSALVPLLKQQPILRNQLFQIDYLSTVSNKIIVSLLYHKKLDE 129 Query: 130 AWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQ 189 W A +L+ L +++ +Q+IGRANK KICLD+D++DE L + G+ IYRQ+ENSFTQ Sbjct: 130 TWIAAAKQLKQQLEQQQFDVQIIGRANKQKICLDQDFIDEVLPINGKNYIYRQVENSFTQ 189 Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249 PNAGIN M+EW L+ T+ +GDLLELYCGNGNFS+ LA+HF +VLA EIAKPSV+AA++ Sbjct: 190 PNAGINCQMIEWALSCTENAEGDLLELYCGNGNFSVALAQHFRKVLATEIAKPSVQAAQF 249 Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309 NI ANH++N++I+RMS++EFTQA++ REF RLK ID+ Y+ TIFVDPPR+GLD T+ Sbjct: 250 NITANHIDNLQIIRMSAEEFTQALQGVREFYRLKGIDLKQYQCNTIFVDPPRAGLDAETL 309 Query: 310 GMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 MVQ Y HILYISCNP +L +L++LS TH IE+ ALFDQFPYTRH+E GV LVRK Sbjct: 310 KMVQQYDHILYISCNPQTLAENLTVLSQTHHIEKAALFDQFPYTRHIESGVYLVRK 365 >gi|304415290|ref|ZP_07395981.1| tRNA (uracil-5-)-methyltransferase [Candidatus Regiella insecticola LSR1] gi|304282856|gb|EFL91328.1| tRNA (uracil-5-)-methyltransferase [Candidatus Regiella insecticola LSR1] Length = 357 Score = 446 bits (1148), Expect = e-123, Method: Compositional matrix adjust. Identities = 209/357 (58%), Positives = 274/357 (76%) Query: 14 LAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRI 73 +A+KVD L+ ++ F+VP +++F S HYRMRAEF +WHDGDDLYHIMF +TK+R+R+ Sbjct: 1 MAKKVDCLKDILSQFEVPEVEVFSSPIEHYRMRAEFRVWHDGDDLYHIMFAPKTKQRIRV 60 Query: 74 DYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRE 133 ++F S LIN LM +++ ++ +P+LR KLFQIDYL++ S++ I +L+YHR LD+ W++ Sbjct: 61 EHFPIASQLINRLMKILISIVKNQPILRHKLFQIDYLSTYSNKIIASLLYHRKLDEEWQQ 120 Query: 134 CAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAG 193 AIRLRD L + + +QLIGRA KTKI LD+D+VDE L++AGR +IYRQIENSFTQPNA Sbjct: 121 QAIRLRDQLRLQGFDLQLIGRAAKTKIVLDQDHVDEVLSIAGRDIIYRQIENSFTQPNAA 180 Query: 194 INVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAA 253 +N+HMLEW + +K QGDLLE YCGNGNFSL LAR+F RVLA EIAKPSV AA++NIA Sbjct: 181 VNIHMLEWAIDVSKNFQGDLLEPYCGNGNFSLALARNFRRVLATEIAKPSVAAAQFNIAV 240 Query: 254 NHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ 313 N ++NV I+RMS++E QA+ +R+FNRL+ I++ SY +TI VDPPR GLDD TV M Sbjct: 241 NGIDNVTIIRMSAQELVQALAGQRQFNRLRGIELKSYHCETILVDPPRCGLDDTTVKMAS 300 Query: 314 AYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRKPSGWH 370 Y I+YISCNP SL +L L T+ I RLALFDQFPYT H+ECGVLL ++ H Sbjct: 301 TYSRIIYISCNPISLRSNLEQLQHTYKISRLALFDQFPYTEHIECGVLLEKREPVNH 357 >gi|260914579|ref|ZP_05921047.1| tRNA (uracil-5-)-methyltransferase [Pasteurella dagmatis ATCC 43325] gi|260631370|gb|EEX49553.1| tRNA (uracil-5-)-methyltransferase [Pasteurella dagmatis ATCC 43325] Length = 365 Score = 446 bits (1147), Expect = e-123, Method: Compositional matrix adjust. Identities = 209/365 (57%), Positives = 272/365 (74%) Query: 1 MSGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60 M L I+QY+ LAEK +L ++ F P++++F S +YRMRAEF IWH+ D YH Sbjct: 1 MQSKLPIEQYDSLLAEKQQKLTALLAPFNPPSIEVFSSPVQNYRMRAEFRIWHNQGDFYH 60 Query: 61 IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVT 120 IMFDQQT++R R+D F S LIN +M ++ ++ E L KLFQIDYL++ S++ IV+ Sbjct: 61 IMFDQQTRQRYRVDTFPIASELINQMMTALLPLLKTERALHHKLFQIDYLSTLSNKIIVS 120 Query: 121 LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIY 180 L+YH+ LD+ W E A +L+ AL + + +Q+IGRA+K KICLD ++VDE LTV + +Y Sbjct: 121 LLYHKTLDEQWEEAAKQLKLALEQQGFDVQIIGRASKQKICLDNEFVDEVLTVHSKPYVY 180 Query: 181 RQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240 RQ+ENSFTQPNA +N MLEW + TKG QGDLLELYCGNGNFS+ LA++F +VLA EIA Sbjct: 181 RQVENSFTQPNAMVNQKMLEWAIDCTKGSQGDLLELYCGNGNFSIALAQNFRKVLATEIA 240 Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300 KPSV AA++NIA N V+N++I+RMS++EFTQA+ REFNRLK ID+ +Y TIFVDPP Sbjct: 241 KPSVAAAQFNIAENGVDNLQIIRMSAEEFTQAINGVREFNRLKGIDLKAYECNTIFVDPP 300 Query: 301 RSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360 R+GLD+ TV +VQ Y ILYISCNP +LC +L LS TH IE+ ALFDQFPYT HME GV Sbjct: 301 RAGLDEETVKLVQGYDRILYISCNPHTLCDNLQTLSQTHYIEKAALFDQFPYTDHMETGV 360 Query: 361 LLVRK 365 L+RK Sbjct: 361 WLIRK 365 >gi|145297241|ref|YP_001140082.1| tRNA (uracil-5-)-methyltransferase [Aeromonas salmonicida subsp. salmonicida A449] gi|166988115|sp|A4SHG2|TRMA_AERS4 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|142850013|gb|ABO88334.1| tRNA (uracil-5)-methyltransferase [Aeromonas salmonicida subsp. salmonicida A449] Length = 377 Score = 444 bits (1143), Expect = e-123, Method: Compositional matrix adjust. Identities = 211/356 (59%), Positives = 272/356 (76%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69 Y+ QL EK +RL Q+ F P L++ S HYRMRAEF IWH+GDDL+H M+ Q TKE Sbjct: 20 YQAQLDEKRERLTQLFAGFNPPALEVHASPAEHYRMRAEFRIWHEGDDLFHCMYAQATKE 79 Query: 70 RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDD 129 +R+D+F SLLIN LM ++A +R +LR KLFQIDYL++QS Q IV+L+YHR L+ Sbjct: 80 IIRVDHFPTASLLINQLMPVLLAGLRPHFVLRRKLFQIDYLSTQSGQIIVSLLYHRKLEA 139 Query: 130 AWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQ 189 W++ A L+ L A+ + ++LIGRA+K KICL D+V E+L VAGR L Y+Q+ENSFTQ Sbjct: 140 EWQQAAETLQADLQAQGFDLRLIGRAHKQKICLGDDFVIEQLNVAGRQLTYKQVENSFTQ 199 Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249 PNA IN ML W L T+G +GDLLELYCGNGNFS+ LA++F +VLA EIAKPSV++A++ Sbjct: 200 PNAAINEQMLGWALDVTRGSEGDLLELYCGNGNFSIALAQNFRKVLATEIAKPSVDSAQF 259 Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309 NIAAN V+N+ I+RMS++EFT AMR EREFNRLK +D+ SY+ TIFVDPPR+GLDDATV Sbjct: 260 NIAANGVDNLIILRMSAEEFTMAMRGEREFNRLKGVDLKSYQCNTIFVDPPRAGLDDATV 319 Query: 310 GMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 +VQ Y +ILYISCNP++L ++++L TH + R ALFDQFP+T HME GV L RK Sbjct: 320 KLVQEYDNILYISCNPETLQANMAVLGETHEVARFALFDQFPWTHHMEAGVYLKRK 375 >gi|330827816|ref|YP_004390768.1| tRNA (uracil-5-)-methyltransferase [Aeromonas veronii B565] gi|328802952|gb|AEB48151.1| tRNA (uracil-5-)-methyltransferase [Aeromonas veronii B565] Length = 377 Score = 443 bits (1140), Expect = e-122, Method: Compositional matrix adjust. Identities = 211/356 (59%), Positives = 272/356 (76%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69 Y+ QL EK RL ++ F +P L++ S +YRMRAEF IWH+GDDL+H M+ TKE Sbjct: 20 YQAQLDEKRARLTELFAGFTLPALEVHSSPAEYYRMRAEFRIWHEGDDLFHCMYAPATKE 79 Query: 70 RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDD 129 ++ID+F S LIN LM ++ +R P+LR KLFQIDYL++QS Q IV+L+YHR L+ Sbjct: 80 IIKIDHFPTASRLINQLMPLLLEGLRPHPVLRRKLFQIDYLSTQSGQIIVSLLYHRKLEA 139 Query: 130 AWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQ 189 W++ A L+ L A+ +++QLIGRA+K KICL D+V E+L VAGR LIY+Q+ENSFTQ Sbjct: 140 EWQQAAEALQADLRAKGFELQLIGRAHKQKICLGDDFVIEQLNVAGRQLIYKQVENSFTQ 199 Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249 PNA IN ML W L TKG +GDLLELYCGNGNFS+ LA++F +VLA EIAKPSV++A++ Sbjct: 200 PNATINEQMLAWALDVTKGSEGDLLELYCGNGNFSIALAQNFRKVLATEIAKPSVDSAQF 259 Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309 NIAAN V+N+ I+RMS++EFT AMR EREFNRLK +D+ SY+ TIFVDPPR+GLDDATV Sbjct: 260 NIAANGVDNLIILRMSAEEFTMAMRGEREFNRLKGVDLKSYQCNTIFVDPPRAGLDDATV 319 Query: 310 GMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 +VQ Y +ILYISCNP++L ++++L TH I R ALFDQFP+T HME GV L RK Sbjct: 320 KLVQEYDNILYISCNPETLQANMAVLGETHEIARFALFDQFPWTHHMEAGVYLRRK 375 >gi|117621352|ref|YP_858614.1| tRNA (uracil-5-)-methyltransferase [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|134035054|sp|A0KQR3|TRMA_AERHH RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|117562759|gb|ABK39707.1| tRNA (uracil-5-)-methyltransferase [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 377 Score = 443 bits (1139), Expect = e-122, Method: Compositional matrix adjust. Identities = 211/356 (59%), Positives = 270/356 (75%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69 Y+ QL EK +RL + F +P L++ S HYRMRAEF IWHDGDDLYH M+ TKE Sbjct: 20 YQAQLDEKRERLCGLFADFTLPALEVHASPAEHYRMRAEFRIWHDGDDLYHCMYAPATKE 79 Query: 70 RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDD 129 +R+D F S LIN LM ++ +R P+LR KLFQIDYL++QS Q V+L+YHR L+ Sbjct: 80 IIRVDQFPTASRLINQLMPVLLEGLRPHPVLRRKLFQIDYLSTQSGQICVSLLYHRKLES 139 Query: 130 AWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQ 189 W++ A L+ L A+ +++QLIGRA+K KICL ++V ERLTV GR L+Y+Q+ENSFTQ Sbjct: 140 EWQQAAEALQADLRAKGFELQLIGRAHKQKICLGEEFVIERLTVQGRQLVYKQVENSFTQ 199 Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249 PNA IN ML W L TKG +GDLLELYCGNGNFS+ LA++F +VLA EIAKPSV++A++ Sbjct: 200 PNAAINEQMLGWALDVTKGSEGDLLELYCGNGNFSIALAQNFRKVLATEIAKPSVDSAQF 259 Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309 NIAAN V+N+ I+RMS++EFT AMR EREFNRLK +D+ +Y+ TIFVDPPR+GLDDATV Sbjct: 260 NIAANGVDNLIILRMSAEEFTMAMRGEREFNRLKGVDLGAYQCNTIFVDPPRAGLDDATV 319 Query: 310 GMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 +VQ Y +ILYISCNP++L ++++L TH I R ALFDQFP+T HME GV L RK Sbjct: 320 KLVQDYDNILYISCNPETLQANMAVLGETHEIARFALFDQFPWTHHMEAGVYLKRK 375 >gi|237807152|ref|YP_002891592.1| tRNA (uracil-5-)-methyltransferase [Tolumonas auensis DSM 9187] gi|259547838|sp|C4L9A7|TRMA_TOLAT RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|237499413|gb|ACQ92006.1| tRNA (uracil-5-)-methyltransferase [Tolumonas auensis DSM 9187] Length = 367 Score = 442 bits (1138), Expect = e-122, Method: Compositional matrix adjust. Identities = 211/357 (59%), Positives = 267/357 (74%), Gaps = 1/357 (0%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDG-DDLYHIMFDQQTK 68 Y+QQL EK RL Q++ FQ P ++F S P HYRMRAEF IWH+G D+LY++MF+ +TK Sbjct: 11 YQQQLHEKQQRLTQLLAPFQAPEPEVFASAPSHYRMRAEFRIWHEGVDELYYVMFNSETK 70 Query: 69 ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLD 128 +R + F GS LIN LM ++ IR L+ KLFQID+LT+ S +A+++L+YH+ L+ Sbjct: 71 QRYYVHEFPTGSQLINRLMPRLLELIRGNHTLKYKLFQIDFLTTLSGEALISLLYHKTLN 130 Query: 129 DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFT 188 +AW+ A LR AL A ++ ++GRA+K KI L+R+YV E+L V RTL Y Q+ENSFT Sbjct: 131 EAWQPAATELRQALRAEFGEVDVVGRAHKQKIVLEREYVLEQLQVGDRTLEYMQVENSFT 190 Query: 189 QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248 QPNAG+N ML W T QGDLLELYCGNGNFSL LA++F+RVLA EIAKPSV AA+ Sbjct: 191 QPNAGMNQQMLGWATDVTADCQGDLLELYCGNGNFSLALAKNFNRVLATEIAKPSVHAAQ 250 Query: 249 YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDAT 308 +NIA N ++NV+I+RMS++EFTQAM EREFNRLK ID+ SY+ TI VDPPR+GLD AT Sbjct: 251 HNIAVNKIDNVQILRMSAEEFTQAMNGEREFNRLKGIDLQSYQCNTILVDPPRAGLDPAT 310 Query: 309 VGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 V M+QAY ILYISCNP++LC +L L TH I R ALFDQFP+T HME GV LVRK Sbjct: 311 VAMIQAYEQILYISCNPETLCDNLKTLCQTHNIARCALFDQFPFTHHMESGVWLVRK 367 >gi|293391475|ref|ZP_06635809.1| hypothetical protein D7S_1630 [Aggregatibacter actinomycetemcomitans D7S-1] gi|290952009|gb|EFE02128.1| hypothetical protein D7S_1630 [Aggregatibacter actinomycetemcomitans D7S-1] Length = 365 Score = 442 bits (1138), Expect = e-122, Method: Compositional matrix adjust. Identities = 207/362 (57%), Positives = 265/362 (73%) Query: 4 TLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63 L +++Y LAEK +L + F P LQ+F S H+RMRAEF IWH+ DD YHIMF Sbjct: 3 NLPVERYAALLAEKQKKLTALFAPFDAPELQVFASPTQHFRMRAEFRIWHEQDDFYHIMF 62 Query: 64 DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIY 123 DQQ+K+R R+D F S LIN +M ++ ++ + +L +LFQIDYL++QS Q IV+L+Y Sbjct: 63 DQQSKQRYRVDRFPVASELINRMMTALLPLLKQQTVLHHRLFQIDYLSTQSQQIIVSLLY 122 Query: 124 HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQI 183 H+ LDDAW+ LR L + + +QLIGRA+K KICL++DYVDE L V + +YRQ+ Sbjct: 123 HKTLDDAWQTATRTLRSQLQQQGFNVQLIGRASKQKICLEQDYVDEILNVHDKQYVYRQV 182 Query: 184 ENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 ENSFTQPNA +N MLEW + T+ GDLLELYCGNGNFS+ LA++F VLA EIAKPS Sbjct: 183 ENSFTQPNAAVNSKMLEWAVDCTRNSHGDLLELYCGNGNFSIALAQNFRNVLATEIAKPS 242 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 V AA++NIAAN V N++I+RMS++EFTQAM+ R FNRLK ID+ +Y+ TIFVDPPR+G Sbjct: 243 VAAAQFNIAANKVENLQIIRMSAEEFTQAMQGVRAFNRLKGIDLSAYQCNTIFVDPPRAG 302 Query: 304 LDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363 LD+ T+ +VQ Y ILYISCNP +LC +L L TH IE+ ALFDQFPYT HME GV LV Sbjct: 303 LDEETLKLVQQYERILYISCNPHTLCDNLQTLCQTHRIEKAALFDQFPYTEHMEAGVWLV 362 Query: 364 RK 365 RK Sbjct: 363 RK 364 >gi|209696286|ref|YP_002264217.1| tRNA (uracil-5-)-methyltransferase [Aliivibrio salmonicida LFI1238] gi|226706003|sp|B6ENT4|TRMA_ALISL RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|208010240|emb|CAQ80571.1| tRNA (uracil-5)-methyltransferase [Aliivibrio salmonicida LFI1238] Length = 368 Score = 441 bits (1134), Expect = e-122, Method: Compositional matrix adjust. Identities = 204/360 (56%), Positives = 268/360 (74%), Gaps = 2/360 (0%) Query: 8 DQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQT 67 + Y+ QL EK + L M F VP L++F S +YRMRAEF IWH+GDD+Y++MFDQ+T Sbjct: 9 ENYQVQLDEKTEALSAMFSEFDVPELEVFSSPAENYRMRAEFRIWHEGDDMYYVMFDQKT 68 Query: 68 KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLL 127 KE+ R+DYF+P + LIN LM + I+ LR K+FQ+D+L++ S + +V+++YHR L Sbjct: 69 KEKYRVDYFLPATRLINDLMPLLAEAIKGSKTLRYKMFQVDFLSTLSGEILVSMLYHRQL 128 Query: 128 DDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSF 187 DDAW+E A L+ L+ + + + LIGRA K KI LD+++V E+L V L Y+Q+ENSF Sbjct: 129 DDAWKEEAAVLKQQLNEKGFNLNLIGRARKMKIVLDQEFVIEKLKVNDDILTYKQVENSF 188 Query: 188 TQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA 247 TQPN + MLEW + T+ QGDLLELYCGNGNFSL LA++FDRVLA E+AKPSVE+A Sbjct: 189 TQPNGVVAQKMLEWAVDCTQDSQGDLLELYCGNGNFSLALAKNFDRVLATELAKPSVESA 248 Query: 248 RYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGLD 305 +YNIAAN+++NV+IVRMS+++FT AM +REF RLKD +D+ SY TIFVDPPRSG+D Sbjct: 249 QYNIAANNIDNVQIVRMSAEDFTDAMEGKREFRRLKDQNVDLKSYNCNTIFVDPPRSGMD 308 Query: 306 DATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 + T MVQ Y I+YISCNPD+L +L+ILS TH I R ALFDQFPYT HME G+ L RK Sbjct: 309 EGTCKMVQGYERIMYISCNPDTLKENLAILSKTHNITRFALFDQFPYTHHMEAGIFLERK 368 >gi|325576854|ref|ZP_08147469.1| tRNA (uracil-5-)-methyltransferase [Haemophilus parainfluenzae ATCC 33392] gi|325161060|gb|EGC73178.1| tRNA (uracil-5-)-methyltransferase [Haemophilus parainfluenzae ATCC 33392] Length = 363 Score = 441 bits (1134), Expect = e-121, Method: Compositional matrix adjust. Identities = 206/361 (57%), Positives = 265/361 (73%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L I QY + L +K ++L ++ F P + +F S HYRMRAEF IWHD D YHIMFD Sbjct: 3 LPISQYTELLQKKTEKLTALLQPFNAPEIAVFDSPTSHYRMRAEFRIWHDKGDFYHIMFD 62 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 Q T +R R+D F S LIN +M ++ ++ + +L KLFQIDYL++ S++ IV+L+YH Sbjct: 63 QSTLQRYRVDEFPIASKLINRMMKTLLPLLKTQEVLHKKLFQIDYLSTLSNKIIVSLLYH 122 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + L + W+ A L+D L + +QLIGRA+K KICL++D+VDE L V GR +YRQ+E Sbjct: 123 KQLTEEWQNAAENLKDELQQLDFDVQLIGRASKQKICLEQDFVDEVLPVKGRNYVYRQVE 182 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N MLEW + T+G QGDLLELYCGNGNFS+ LA++F +VLA EIAKPSV Sbjct: 183 NSFTQPNAAVNCKMLEWAIDCTQGSQGDLLELYCGNGNFSIALAQNFRKVLATEIAKPSV 242 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA++NIA N ++N++I+RMS++EFTQAM REFNRLK ID+ +Y+ TIFVDPPR+GL Sbjct: 243 AAAQFNIAENGIDNLQIIRMSAEEFTQAMNGVREFNRLKGIDLKAYQCNTIFVDPPRAGL 302 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D TV +VQ Y ILYISCNP +LC +L LS TH IE+ ALFDQFPYT HME GV LVR Sbjct: 303 DPDTVKLVQNYDRILYISCNPHTLCENLQTLSQTHRIEKAALFDQFPYTDHMESGVWLVR 362 Query: 365 K 365 K Sbjct: 363 K 363 >gi|309973661|gb|ADO96862.1| tRNA m(5)U54 methyltransferase [Haemophilus influenzae R2846] Length = 377 Score = 439 bits (1128), Expect = e-121, Method: Compositional matrix adjust. Identities = 205/365 (56%), Positives = 268/365 (73%) Query: 1 MSGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60 +S L I QY + L +K+++L ++ F P++Q+F S HYRMRAEF IWH+ DD YH Sbjct: 13 ISMQLPISQYNELLQKKLEKLTALLRPFNAPDIQVFDSPTSHYRMRAEFRIWHEQDDFYH 72 Query: 61 IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVT 120 IMFDQ T +R R+D F S+LIN +M ++ ++ + +L KLFQIDYL++ S++ IV+ Sbjct: 73 IMFDQATLQRYRVDEFPIASMLINRMMQTLLPLLKQQEVLHKKLFQIDYLSTLSNKIIVS 132 Query: 121 LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIY 180 L+YH+ L + W A L+D L + + +Q+IGRA+K KIC ++DYVDE L V GR +Y Sbjct: 133 LLYHKTLTEEWESAAKNLKDLLEKQGFNVQIIGRASKQKICFEQDYVDEVLPVNGRNYVY 192 Query: 181 RQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240 RQ+ENSFTQPNA +N MLEW + T+ +GDLLELYCGNGNFS+ LA++F +VLA EIA Sbjct: 193 RQVENSFTQPNATVNCKMLEWAIDCTQNSEGDLLELYCGNGNFSIALAQNFRKVLATEIA 252 Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300 KPSV AA++NIA N V+N++I+RMS++EFTQAM R FNRLK ID+ SY TIFVDPP Sbjct: 253 KPSVAAAQFNIAENKVDNLQIIRMSAEEFTQAMNGVRAFNRLKGIDLKSYECNTIFVDPP 312 Query: 301 RSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360 R+GLD TV +VQ Y ILYISCNP +LC +L LS TH IE+ ALFDQFPYT HME GV Sbjct: 313 RAGLDPDTVKLVQNYDRILYISCNPHTLCDNLVELSKTHRIEKAALFDQFPYTDHMESGV 372 Query: 361 LLVRK 365 L+RK Sbjct: 373 WLIRK 377 >gi|170718062|ref|YP_001783531.1| tRNA (uracil-5-)-methyltransferase [Haemophilus somnus 2336] gi|189036040|sp|B0UVN9|TRMA_HAES2 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|168826191|gb|ACA31562.1| tRNA (uracil-5-)-methyltransferase [Haemophilus somnus 2336] Length = 366 Score = 439 bits (1128), Expect = e-121, Method: Compositional matrix adjust. Identities = 205/363 (56%), Positives = 268/363 (73%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L I+QY LAEK +L ++ F P L +F SE H+RMRAEF IWH+ DD YHIMFD Sbjct: 4 LPIEQYSALLAEKQQKLTALLAPFNSPPLDVFASETSHFRMRAEFRIWHEQDDFYHIMFD 63 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 Q+TK+R RID F S LIN +M+ ++ ++ +L +LFQIDYL++ S++ IV+L+YH Sbjct: 64 QKTKQRFRIDQFPIASQLINQMMLALLPLLKQHNILTHRLFQIDYLSTLSNKIIVSLLYH 123 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + L++ W + A +L+ L + + +Q+IGRANK KICL +D+VDE L V + IYRQ+E Sbjct: 124 KTLNEEWLQAATQLKQQLIKQGFDVQIIGRANKQKICLQQDFVDEILPVKNQQYIYRQVE 183 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N MLEW + TK QGDLLELYCGNGNFS+ LA++F +VLA EIAKPSV Sbjct: 184 NSFTQPNATVNCKMLEWAINCTKNSQGDLLELYCGNGNFSIALAQNFRKVLATEIAKPSV 243 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA++NIAAN ++N+ I+RMS+++FTQAM R FNRLK I++ Y+ TIFVDPPRSGL Sbjct: 244 SAAQFNIAANKIDNLHIIRMSAEDFTQAMNGVRAFNRLKGINLQDYQCNTIFVDPPRSGL 303 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D ATV +VQ Y ILYISCNP +LC +L L+ TH IE+ ALFDQFPYT HME GV L++ Sbjct: 304 DMATVKLVQNYERILYISCNPYTLCENLQELTKTHRIEKAALFDQFPYTEHMESGVWLIK 363 Query: 365 KPS 367 K + Sbjct: 364 KSN 366 >gi|301155200|emb|CBW14665.1| tRNA (uracil-5-)-methyltransferase [Haemophilus parainfluenzae T3T1] Length = 363 Score = 439 bits (1128), Expect = e-121, Method: Compositional matrix adjust. Identities = 205/361 (56%), Positives = 264/361 (73%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L I QY + L +K ++L ++ F P + +F S HYRMRAEF IWHD D YHIMFD Sbjct: 3 LPISQYTELLQKKTEKLTALLQPFNAPEIAVFDSPTSHYRMRAEFRIWHDKGDFYHIMFD 62 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 Q T +R R+D F S LIN +M ++ ++ + +L KLFQIDYL++ S++ IV+L+YH Sbjct: 63 QTTLQRYRVDEFPIASELINRMMKALLPLLKTQEVLHKKLFQIDYLSTLSNKIIVSLLYH 122 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + L + W+ A L+ L + +QLIGRA+K KICL++D+VDE L V GR +YRQ+E Sbjct: 123 KQLTEEWQSAAANLKGELQQLGFDVQLIGRASKQKICLEQDFVDEVLPVKGRNYVYRQVE 182 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N MLEW + T+G QGDLLELYCGNGNFS+ LA++F +VLA EIAKPSV Sbjct: 183 NSFTQPNAAVNCKMLEWAIDCTQGSQGDLLELYCGNGNFSIALAQNFRKVLATEIAKPSV 242 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA++NIA N ++N++I+RMS++EFTQAM REFNRLK ID+ +Y+ TIFVDPPR+GL Sbjct: 243 AAAQFNIAENGIDNLQIIRMSAEEFTQAMNGVREFNRLKGIDLKTYQCNTIFVDPPRAGL 302 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D TV +VQ Y ILYISCNP +LC +L LS TH IE+ ALFDQFPYT HME GV LVR Sbjct: 303 DPDTVKLVQNYDRILYISCNPHTLCENLQTLSQTHRIEKAALFDQFPYTDHMESGVWLVR 362 Query: 365 K 365 K Sbjct: 363 K 363 >gi|113460452|ref|YP_718514.1| tRNA (uracil-5-)-methyltransferase [Haemophilus somnus 129PT] gi|112822495|gb|ABI24584.1| tRNA (uracil-5-)-methyltransferase [Haemophilus somnus 129PT] Length = 399 Score = 438 bits (1126), Expect = e-121, Method: Compositional matrix adjust. Identities = 204/363 (56%), Positives = 269/363 (74%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L I+QY LAEK +L +++ F P L +F SE H+RMRAEF IWH+ DD YHIMFD Sbjct: 37 LPIEQYSALLAEKQQKLTELLAPFNSPPLDVFASETSHFRMRAEFRIWHEQDDFYHIMFD 96 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 Q+TK+R RID F S LIN +M+ ++ ++ +L +LFQIDYL++ S++ IV+L+YH Sbjct: 97 QKTKQRFRIDQFPIASQLINQMMLALLPLLKQHNILTHRLFQIDYLSTLSNKIIVSLLYH 156 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + L++ W + A +L+ L + + +Q+IGRANK KICL +D+VDE L V + IYRQ+E Sbjct: 157 KTLNEEWLQAATQLKQQLIKQGFDVQIIGRANKQKICLQQDFVDEILPVKNQQYIYRQVE 216 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N MLEW + TK QGDLLELYCGNGNFS+ LA++F +VLA EIAKPSV Sbjct: 217 NSFTQPNATVNCKMLEWAIDCTKNSQGDLLELYCGNGNFSIALAQNFRKVLATEIAKPSV 276 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA++NIAAN ++N+ I+RMS+++FTQAM R FNRLK I++ Y+ TIFVDPPR+GL Sbjct: 277 SAAQFNIAANKIDNLHIIRMSAEDFTQAMNGVRAFNRLKGINLQDYQCNTIFVDPPRAGL 336 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D ATV +VQ Y ILYISCNP +LC +L L+ TH IE+ ALFDQFPYT HME GV L++ Sbjct: 337 DMATVKLVQNYERILYISCNPYTLCENLQELTKTHRIEKAALFDQFPYTEHMESGVWLIK 396 Query: 365 KPS 367 K + Sbjct: 397 KSN 399 >gi|229525047|ref|ZP_04414452.1| tRNA (uracil-5-)-methyltransferase [Vibrio cholerae bv. albensis VL426] gi|229338628|gb|EEO03645.1| tRNA (uracil-5-)-methyltransferase [Vibrio cholerae bv. albensis VL426] Length = 369 Score = 438 bits (1126), Expect = e-121, Method: Compositional matrix adjust. Identities = 203/358 (56%), Positives = 269/358 (75%), Gaps = 2/358 (0%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69 Y+ QLA+K+ RL+ M + + +P L++F S +YRMRAEF IWH+GDD+Y+IMF+Q+T+E Sbjct: 11 YQAQLADKIARLKAMFVDYSMPELEVFESPVANYRMRAEFRIWHEGDDMYYIMFNQETRE 70 Query: 70 RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDD 129 + R+D F S LIN LM +M ++ P+LR KLFQ+D+L++ S + +V+L+YHR L + Sbjct: 71 KYRVDQFPAASRLINDLMPLLMDAMKGSPILRHKLFQVDFLSTLSGEILVSLLYHRQLSE 130 Query: 130 AWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQ 189 W A L+ L+ + + LIGRA K K+ LDRDYV E+L V G+ +Y+Q+ENSFTQ Sbjct: 131 EWITAAQALKQRLNDEGFNLNLIGRARKMKVVLDRDYVVEKLQVNGQPYVYKQVENSFTQ 190 Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249 PNAG+ MLEW + T+ +GDLLELYCGNGNFSL LA++F+RVLA E+AKPSVEAA++ Sbjct: 191 PNAGVAEKMLEWAVDCTQESKGDLLELYCGNGNFSLALAQNFERVLATELAKPSVEAAQF 250 Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGLDDA 307 NIAAN + NV+I+RMS++EFTQAM +REFNRLKD +D+ SYR TIFVDPPRSG+D Sbjct: 251 NIAANQIGNVQIIRMSAEEFTQAMEGKREFNRLKDAGVDLQSYRCNTIFVDPPRSGMDID 310 Query: 308 TVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 T MVQ Y ILYISCNP++L +L +L TH + R ALFDQFPYT HME GV+L RK Sbjct: 311 TCKMVQGYERILYISCNPETLQENLQVLGETHQVVRFALFDQFPYTHHMEAGVMLERK 368 >gi|134035059|sp|Q0I1I7|TRMA_HAES1 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT Length = 366 Score = 437 bits (1124), Expect = e-120, Method: Compositional matrix adjust. Identities = 204/363 (56%), Positives = 269/363 (74%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L I+QY LAEK +L +++ F P L +F SE H+RMRAEF IWH+ DD YHIMFD Sbjct: 4 LPIEQYSALLAEKQQKLTELLAPFNSPPLDVFASETSHFRMRAEFRIWHEQDDFYHIMFD 63 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 Q+TK+R RID F S LIN +M+ ++ ++ +L +LFQIDYL++ S++ IV+L+YH Sbjct: 64 QKTKQRFRIDQFPIASQLINQMMLALLPLLKQHNILTHRLFQIDYLSTLSNKIIVSLLYH 123 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + L++ W + A +L+ L + + +Q+IGRANK KICL +D+VDE L V + IYRQ+E Sbjct: 124 KTLNEEWLQAATQLKQQLIKQGFDVQIIGRANKQKICLQQDFVDEILPVKNQQYIYRQVE 183 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N MLEW + TK QGDLLELYCGNGNFS+ LA++F +VLA EIAKPSV Sbjct: 184 NSFTQPNATVNCKMLEWAIDCTKNSQGDLLELYCGNGNFSIALAQNFRKVLATEIAKPSV 243 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA++NIAAN ++N+ I+RMS+++FTQAM R FNRLK I++ Y+ TIFVDPPR+GL Sbjct: 244 SAAQFNIAANKIDNLHIIRMSAEDFTQAMNGVRAFNRLKGINLQDYQCNTIFVDPPRAGL 303 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D ATV +VQ Y ILYISCNP +LC +L L+ TH IE+ ALFDQFPYT HME GV L++ Sbjct: 304 DMATVKLVQNYERILYISCNPYTLCENLQELTKTHRIEKAALFDQFPYTEHMESGVWLIK 363 Query: 365 KPS 367 K + Sbjct: 364 KSN 366 >gi|260581665|ref|ZP_05849462.1| tRNA (uracil-5-)-methyltransferase [Haemophilus influenzae NT127] gi|260095258|gb|EEW79149.1| tRNA (uracil-5-)-methyltransferase [Haemophilus influenzae NT127] Length = 363 Score = 437 bits (1124), Expect = e-120, Method: Compositional matrix adjust. Identities = 204/361 (56%), Positives = 266/361 (73%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L I QY + L +K+++L ++ F P++Q+F S HYRMRAEF IWH+ DD YHIMFD Sbjct: 3 LPISQYNELLQKKLEKLTALLHPFNAPDIQVFDSPTSHYRMRAEFRIWHEQDDFYHIMFD 62 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 Q T +R R+D F S+LIN +M ++ ++ + +L KLFQIDYL++ S++ IV+L+YH Sbjct: 63 QATLQRYRVDEFPIASMLINRMMQTLLPLLKQQEVLHKKLFQIDYLSTLSNKIIVSLLYH 122 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + L + W A L+D L + + +Q+IGRA+K KIC ++DYVDE L V GR +YRQ+E Sbjct: 123 KTLTEEWESAAKNLKDLLEKQGFDVQIIGRASKQKICFEQDYVDEVLPVNGRNYVYRQVE 182 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N MLEW + T+ +GDLLELYCGNGNFS+ LA++F +VLA EIAKPSV Sbjct: 183 NSFTQPNATVNCKMLEWTIDCTQNSEGDLLELYCGNGNFSIALAQNFRKVLATEIAKPSV 242 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA++NIA N V+N++I+RMS++EFTQAM R FNRLK ID+ SY TIFVDPPR+GL Sbjct: 243 AAAQFNIAENKVDNLQIIRMSAEEFTQAMNGARAFNRLKGIDLESYECNTIFVDPPRAGL 302 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D TV +VQ Y ILYISCNP +LC +L LS TH IE+ ALFDQFPYT HME GV L+R Sbjct: 303 DPDTVKLVQNYDCILYISCNPHTLCDNLVELSKTHRIEKAALFDQFPYTDHMESGVWLIR 362 Query: 365 K 365 K Sbjct: 363 K 363 >gi|52426422|ref|YP_089559.1| tRNA (uracil-5-)-methyltransferase [Mannheimia succiniciproducens MBEL55E] gi|115305869|sp|Q65PY6|TRMA_MANSM RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|52308474|gb|AAU38974.1| TrmA protein [Mannheimia succiniciproducens MBEL55E] Length = 364 Score = 437 bits (1124), Expect = e-120, Method: Compositional matrix adjust. Identities = 204/361 (56%), Positives = 265/361 (73%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L I++Y + L +K +L ++ F P L +F S +YRMRAEF +WHD DLYHIMF+ Sbjct: 4 LPIEKYSELLTKKQQKLTALLAPFNAPELSVFVSPVQNYRMRAEFRVWHDKGDLYHIMFN 63 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTK+R R+D F SLLIN +M ++ ++ + +L KLFQIDYL++ S++ IV+L+YH Sbjct: 64 QQTKQRYRVDCFPIASLLINRMMENLIPLLKEQEILTKKLFQIDYLSTLSNKIIVSLLYH 123 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + L + W+ A L+ L + +Q++GRA K KICL+RDY DE L V GR +YRQIE Sbjct: 124 KTLTEEWQAAAQALKVRLEKLDFDVQIVGRATKQKICLERDYADEVLPVNGRNYVYRQIE 183 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N MLEW + TK GDLLELYCGNGNFS+ LA++F +VLA EIAKPSV Sbjct: 184 NSFTQPNAAVNCKMLEWAIGCTKNSSGDLLELYCGNGNFSIALAQNFRKVLATEIAKPSV 243 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA++NIA N ++N++I+RMS++EFTQAM REFNRLK ID+ SY TIFVDPPR+GL Sbjct: 244 AAAQFNIAENGIDNLQIIRMSAEEFTQAMNGVREFNRLKGIDLKSYECNTIFVDPPRAGL 303 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D TV +VQ Y ILYISCNP++LC +L+ L+ TH IE+ ALFDQFPYT HME GV L+R Sbjct: 304 DPDTVKLVQNYDRILYISCNPNTLCNNLTELTKTHRIEKAALFDQFPYTDHMESGVWLIR 363 Query: 365 K 365 K Sbjct: 364 K 364 >gi|315178788|gb|ADT85702.1| tRNA (uracil-5-)-methyltransferase [Vibrio furnissii NCTC 11218] Length = 376 Score = 436 bits (1121), Expect = e-120, Method: Compositional matrix adjust. Identities = 207/360 (57%), Positives = 268/360 (74%), Gaps = 2/360 (0%) Query: 8 DQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQT 67 + Y+ QL +KV RL M A+QVP L++F S HYRMRAEF +WHDGDD+Y+IMF+ +T Sbjct: 16 NHYQAQLDDKVTRLTDMFQAYQVPELEVFESPQQHYRMRAEFRVWHDGDDMYYIMFNPET 75 Query: 68 KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLL 127 +E+ R+D F S LIN LM +M ++ + LR KLFQ+D+L++ S + +V+L+YHR L Sbjct: 76 REKYRVDQFPAASRLINDLMPLLMDAMKGDDTLRRKLFQVDFLSTLSGEVLVSLLYHRQL 135 Query: 128 DDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSF 187 D+AW A +L+ L+ + + LIGRA K KI LDRD+V E+L V G+ IY+Q+ENSF Sbjct: 136 DNAWTAAAKKLKQRLNDEGFNLNLIGRARKMKIVLDRDFVVEKLHVNGQPYIYQQVENSF 195 Query: 188 TQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA 247 TQPN + MLEW + T+ QGDLLELYCGNGNFSL LA++FDRVLA E+AKPSVE+A Sbjct: 196 TQPNGKVAEKMLEWAVDCTQESQGDLLELYCGNGNFSLALAQNFDRVLATELAKPSVESA 255 Query: 248 RYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGLD 305 +YNIAAN ++NV+I+RMS++EFTQAM +REFNRLKD +D+ SY TIFVDPPR+G+D Sbjct: 256 QYNIAANAIDNVQIIRMSAEEFTQAMEGKREFNRLKDAGVDLKSYNCNTIFVDPPRAGMD 315 Query: 306 DATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 T MVQ Y ILYISCNP++L +L +L TH + R ALFDQFPYT HME GVLL RK Sbjct: 316 IDTCKMVQGYERILYISCNPETLKDNLDVLCETHRVTRFALFDQFPYTHHMEAGVLLERK 375 >gi|320154991|ref|YP_004187370.1| tRNA (Uracil54-C5-)-methyltransferase [Vibrio vulnificus MO6-24/O] gi|319930303|gb|ADV85167.1| tRNA (Uracil54-C5-)-methyltransferase [Vibrio vulnificus MO6-24/O] Length = 369 Score = 436 bits (1121), Expect = e-120, Method: Compositional matrix adjust. Identities = 208/359 (57%), Positives = 267/359 (74%), Gaps = 2/359 (0%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTK 68 +Y+QQLAEKV RL M +Q P L++F S HYRMRAEF +WH+G+++Y+IMF+Q+T+ Sbjct: 10 RYQQQLAEKVQRLTDMFAPYQAPELEVFESPEQHYRMRAEFRVWHEGEEMYYIMFNQETR 69 Query: 69 ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLD 128 E+ R+D F S LIN LM ++ ++ LR KLFQ+D+L++ S + +V+L+YHR LD Sbjct: 70 EKYRVDQFPAASRLINDLMPLLIDAMKDNESLRRKLFQVDFLSTLSGEILVSLLYHRQLD 129 Query: 129 DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFT 188 DAW E A L+ L+ + + LIGRA K KI LDRDYV E+L V G+ +Y+Q+ENSFT Sbjct: 130 DAWIENAKALKQRLNDEGFNLNLIGRARKMKIVLDRDYVVEKLDVNGKPYVYQQVENSFT 189 Query: 189 QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248 QPN + MLEW + T+ QGDLLELYCGNGNFSL LA++F+RVLA E+AKPSVE+A+ Sbjct: 190 QPNGKVAEKMLEWAVDCTQESQGDLLELYCGNGNFSLALAQNFERVLATELAKPSVESAQ 249 Query: 249 YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGLDD 306 YNIAAN + NV+I+RMS++EFT+AM +REF RLKD ID+ SY TIFVDPPRSG+D Sbjct: 250 YNIAANKIENVQIIRMSAEEFTEAMEGKREFRRLKDNGIDLKSYNCNTIFVDPPRSGMDV 309 Query: 307 ATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 T MVQ Y ILYISCNP++L +L ILS TH I R ALFDQFPYT HME GV+L RK Sbjct: 310 DTCKMVQGYERILYISCNPETLKENLDILSETHHITRFALFDQFPYTHHMEAGVMLERK 368 >gi|37678313|ref|NP_932922.1| tRNA (uracil-5-)-methyltransferase [Vibrio vulnificus YJ016] gi|50401488|sp|Q7MQ79|TRMA_VIBVY RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|37197052|dbj|BAC92893.1| SAM-dependent methyltransferase [Vibrio vulnificus YJ016] Length = 369 Score = 436 bits (1120), Expect = e-120, Method: Compositional matrix adjust. Identities = 208/359 (57%), Positives = 267/359 (74%), Gaps = 2/359 (0%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTK 68 +Y+QQLAEKV RL M +Q P L++F S HYRMRAEF +WH+G+++Y+IMF+Q+T+ Sbjct: 10 RYQQQLAEKVQRLTDMFAPYQAPELEVFESPEQHYRMRAEFRVWHEGEEMYYIMFNQETR 69 Query: 69 ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLD 128 E+ R+D F S LIN LM ++ ++ LR KLFQ+D+L++ S + +V+L+YHR LD Sbjct: 70 EKYRVDQFPAASRLINDLMPLLIDAMKDNESLRRKLFQVDFLSTLSGEILVSLLYHRQLD 129 Query: 129 DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFT 188 DAW E A L+ L+ + + LIGRA K KI LDRDYV E+L V G+ +Y+Q+ENSFT Sbjct: 130 DAWIENAKALKQRLNDEGFDLNLIGRARKMKIVLDRDYVVEKLDVNGKPYVYQQVENSFT 189 Query: 189 QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248 QPN + MLEW + T+ QGDLLELYCGNGNFSL LA++F+RVLA E+AKPSVE+A+ Sbjct: 190 QPNGKVAEKMLEWAVDCTQESQGDLLELYCGNGNFSLALAQNFERVLATELAKPSVESAQ 249 Query: 249 YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGLDD 306 YNIAAN + NV+I+RMS++EFT+AM +REF RLKD ID+ SY TIFVDPPRSG+D Sbjct: 250 YNIAANKIENVQIIRMSAEEFTEAMEGKREFRRLKDNGIDLKSYNCNTIFVDPPRSGMDV 309 Query: 307 ATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 T MVQ Y ILYISCNP++L +L ILS TH I R ALFDQFPYT HME GV+L RK Sbjct: 310 DTCKMVQGYERILYISCNPETLKENLDILSETHHITRFALFDQFPYTHHMEAGVMLERK 368 >gi|329122854|ref|ZP_08251426.1| tRNA (uracil-5-)-methyltransferase [Haemophilus aegyptius ATCC 11116] gi|327472118|gb|EGF17556.1| tRNA (uracil-5-)-methyltransferase [Haemophilus aegyptius ATCC 11116] Length = 363 Score = 436 bits (1120), Expect = e-120, Method: Compositional matrix adjust. Identities = 204/361 (56%), Positives = 266/361 (73%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L I QY + L +K+++L ++ F P++Q+F S HYRMRAEF IWH+ DD YHIMFD Sbjct: 3 LPIFQYNELLQKKLEKLTALLRPFNAPDIQVFDSPTSHYRMRAEFRIWHEQDDFYHIMFD 62 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 Q T +R R+D F S+LIN +M ++ ++ + +L KLFQIDYL++ S++ IV+L+YH Sbjct: 63 QATLQRYRVDEFPIASMLINRMMQTLLPLLKQQEVLHKKLFQIDYLSTLSNKIIVSLLYH 122 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + L + W A L+D L + + +Q+IGRA+K KIC ++DYVDE L V GR +YRQ+E Sbjct: 123 KTLTEEWESAAKNLKDLLEKQDFDVQVIGRASKQKICFEQDYVDEVLPVNGRNYVYRQVE 182 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N MLEW + T+ +GDLLELYCGNGNFS+ LA++F +VLA EIAKPSV Sbjct: 183 NSFTQPNATVNCKMLEWAIDCTQNSEGDLLELYCGNGNFSIALAQNFRKVLATEIAKPSV 242 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA++NIA N V+N++I+RMS++EFTQAM R FNRLK ID+ SY TIFVDPPR+GL Sbjct: 243 AAAQFNIAENKVDNLQIIRMSAEEFTQAMNGVRAFNRLKGIDLKSYECNTIFVDPPRAGL 302 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D TV +VQ Y ILYISCNP +LC +L LS TH IE+ ALFDQFPYT HME GV L+R Sbjct: 303 DPDTVKLVQNYDRILYISCNPHTLCDNLVELSKTHRIEKAALFDQFPYTDHMESGVWLIR 362 Query: 365 K 365 K Sbjct: 363 K 363 >gi|229845900|ref|ZP_04466012.1| tRNA (uracil-5-)-methyltransferase [Haemophilus influenzae 7P49H1] gi|229810904|gb|EEP46621.1| tRNA (uracil-5-)-methyltransferase [Haemophilus influenzae 7P49H1] Length = 363 Score = 436 bits (1120), Expect = e-120, Method: Compositional matrix adjust. Identities = 204/361 (56%), Positives = 265/361 (73%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L I QY + L +K+++L ++ F P++Q+F S HYRMRAEF IWH+ DD YHIMFD Sbjct: 3 LPISQYNELLQKKLEKLTALLRPFNAPDIQVFDSPTSHYRMRAEFRIWHEQDDFYHIMFD 62 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 Q T +R R+D F S IN +M ++ ++ + +L KLFQIDYL++ S++ IV+L+YH Sbjct: 63 QATLQRYRVDEFPIASTQINRMMQTLLPLLKQQEVLHKKLFQIDYLSTLSNKIIVSLLYH 122 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + L + W A L+D L + + +Q+IGRA+K KIC D+DYVDE L+V GR +YRQ+E Sbjct: 123 KTLTEEWESAAKNLKDLLEKQGFDVQIIGRASKQKICFDQDYVDEILSVNGRNYVYRQVE 182 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N MLEW + T+ +GDLLELYCGNGNFS+ LA++F +VLA EIAKPSV Sbjct: 183 NSFTQPNATVNCKMLEWAIDCTQNSEGDLLELYCGNGNFSIALAQNFRKVLATEIAKPSV 242 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA++NIA N V+N++I+RMS++EFTQAM R FNRLK ID+ SY TIFVDPPR+GL Sbjct: 243 AAAQFNIAENKVDNLQIIRMSAEEFTQAMNGVRAFNRLKGIDLKSYECNTIFVDPPRAGL 302 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D TV +VQ Y ILYISCNP +LC +L LS TH IE+ ALFDQFPYT HME GV L+R Sbjct: 303 DPDTVKLVQNYDRILYISCNPHTLCDNLVELSKTHRIEKAALFDQFPYTDHMESGVWLIR 362 Query: 365 K 365 K Sbjct: 363 K 363 >gi|260767615|ref|ZP_05876551.1| tRNA (uracil-5-)-methyltransferase [Vibrio furnissii CIP 102972] gi|260617515|gb|EEX42698.1| tRNA (uracil-5-)-methyltransferase [Vibrio furnissii CIP 102972] Length = 376 Score = 436 bits (1120), Expect = e-120, Method: Compositional matrix adjust. Identities = 206/359 (57%), Positives = 267/359 (74%), Gaps = 2/359 (0%) Query: 8 DQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQT 67 + Y+ QL +KV RL M A+QVP L++F S HYRMRAEF +WHDGDD+Y+IMF+ +T Sbjct: 16 NHYQAQLDDKVTRLTDMFQAYQVPELEVFESPQQHYRMRAEFRVWHDGDDMYYIMFNPET 75 Query: 68 KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLL 127 +E+ R+D F S LIN LM +M ++ + LR KLFQ+D+L++ S + +V+L+YHR L Sbjct: 76 REKYRVDQFPAASRLINDLMPLLMDAMKGDDTLRRKLFQVDFLSTLSGEVLVSLLYHRQL 135 Query: 128 DDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSF 187 DDAW A +L+ L+ + + LIGRA K KI LDRD+V E+L V G+ IY+Q+ENSF Sbjct: 136 DDAWTAAAKKLKQRLNDEGFNLNLIGRARKMKIVLDRDFVVEKLHVNGQPYIYQQVENSF 195 Query: 188 TQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA 247 TQPN + MLEW + T+ QGDLLELYCGNGNFSL LA++FDRVLA E+AKPSVE+A Sbjct: 196 TQPNGKVAEKMLEWAVDCTQESQGDLLELYCGNGNFSLALAQNFDRVLATELAKPSVESA 255 Query: 248 RYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGLD 305 +YNIAAN ++NV+I+RMS++EFTQAM +REFNRLKD +D+ SY TIFVDPPR+G+D Sbjct: 256 QYNIAANAIDNVQIIRMSAEEFTQAMEGKREFNRLKDAGVDLKSYNCNTIFVDPPRAGMD 315 Query: 306 DATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 T MVQ Y ILYISCNP++L +L +L TH + R ALFDQFPYT HME GV+L R Sbjct: 316 IDTCKMVQGYERILYISCNPETLKENLDVLCETHRVTRFALFDQFPYTHHMEAGVMLER 374 >gi|152978112|ref|YP_001343741.1| tRNA (uracil-5-)-methyltransferase [Actinobacillus succinogenes 130Z] gi|171472956|sp|A6VLF9|TRMA_ACTSZ RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|150839835|gb|ABR73806.1| tRNA (uracil-5-)-methyltransferase [Actinobacillus succinogenes 130Z] Length = 369 Score = 435 bits (1119), Expect = e-120, Method: Compositional matrix adjust. Identities = 207/366 (56%), Positives = 268/366 (73%), Gaps = 5/366 (1%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHD-----GDDLY 59 L I++Y++ LAEK +L ++ F P L +F S H+RMRAEF +WHD G +LY Sbjct: 4 LPIEKYDELLAEKCRKLTALLAPFDAPALTVFPSPTQHFRMRAEFRLWHDYSENRGGNLY 63 Query: 60 HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119 HIMFD+ TK+R R+D F S LIN +M ++ ++ + +L KLFQIDYL++ S+Q IV Sbjct: 64 HIMFDKTTKQRYRVDQFPVASQLINRMMATILPLLKEQDVLSRKLFQIDYLSTLSEQIIV 123 Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179 +L+YH+ L D W+E A L+ L + +Q+IGRA K KICLD+D+VDE L+V + + Sbjct: 124 SLLYHKTLTDEWQEAAQALKVRLRNLGFSVQIIGRATKQKICLDQDFVDEELSVGDKKYV 183 Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEI 239 YRQ+ENSFTQPNA +N MLEW + T+ QGDLLELYCGNGNFS+ LA++F +VLA EI Sbjct: 184 YRQVENSFTQPNAALNCKMLEWAIDCTRDSQGDLLELYCGNGNFSIALAQNFRKVLATEI 243 Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299 AKPSV AA++NIAAN V+N++I+RMS++EFTQA+ R FNRLK ID+ +Y TIFVDP Sbjct: 244 AKPSVAAAQFNIAANQVDNLQIIRMSAEEFTQAVNGVRAFNRLKGIDLQAYECHTIFVDP 303 Query: 300 PRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359 PR+GLD TV +VQ Y ILYISCNP +LC +L ILS TH IER ALFDQFPYT HME G Sbjct: 304 PRAGLDSDTVKLVQKYDRILYISCNPQTLCENLQILSQTHRIERAALFDQFPYTEHMEAG 363 Query: 360 VLLVRK 365 V L+RK Sbjct: 364 VWLMRK 369 >gi|16272789|ref|NP_439008.1| tRNA (uracil-5-)-methyltransferase [Haemophilus influenzae Rd KW20] gi|68249442|ref|YP_248554.1| tRNA (uracil-5-)-methyltransferase [Haemophilus influenzae 86-028NP] gi|260579939|ref|ZP_05847769.1| tRNA (uracil-5-)-methyltransferase [Haemophilus influenzae RdAW] gi|1174775|sp|P31812|TRMA_HAEIN RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|81336130|sp|Q4QM53|TRMA_HAEI8 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|1573862|gb|AAC22505.1| tRNA (uracil-5-)-methyltransferase (trmA) [Haemophilus influenzae Rd KW20] gi|68057641|gb|AAX87894.1| tRNA (Uracil-5-)-methyltransferase [Haemophilus influenzae 86-028NP] gi|260093223|gb|EEW77156.1| tRNA (uracil-5-)-methyltransferase [Haemophilus influenzae RdAW] Length = 363 Score = 435 bits (1119), Expect = e-120, Method: Compositional matrix adjust. Identities = 203/361 (56%), Positives = 266/361 (73%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L I QY + L +K+++L ++ F P++Q+F S HYRMRAEF IWH+ DD YHIMFD Sbjct: 3 LPISQYNELLQKKLEKLTALLHPFNAPDIQVFDSPTSHYRMRAEFRIWHEQDDFYHIMFD 62 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 Q T +R R+D F S+LIN +M ++ ++ + +L KLFQIDYL++ S++ IV+L+YH Sbjct: 63 QATLQRYRVDEFPIASMLINRMMQTLLPLLKQQEVLHKKLFQIDYLSTLSNKIIVSLLYH 122 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + L + W A L+D L + + +Q+IGRA+K KIC ++DYVDE L V GR +YRQ+E Sbjct: 123 KTLTEEWESAAKNLKDLLEKQDFDVQIIGRASKQKICFEQDYVDEVLPVNGRNYVYRQVE 182 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N MLEW + T+ +GDLLELYCGNGNFS+ LA++F +VLA EIAKPSV Sbjct: 183 NSFTQPNATVNCKMLEWAIDCTQNSEGDLLELYCGNGNFSIALAQNFRKVLATEIAKPSV 242 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA++NIA N V+N++I+RMS++EFTQAM R FNRLK ID+ SY TIFVDPPR+GL Sbjct: 243 AAAQFNIAENKVDNLQIIRMSAEEFTQAMNGVRAFNRLKGIDLKSYECNTIFVDPPRAGL 302 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D TV +VQ Y ILYISCNP +LC +L LS TH IE+ ALFDQFPYT HME G+ L+R Sbjct: 303 DPDTVKLVQNYDRILYISCNPHTLCDNLVELSKTHRIEKAALFDQFPYTDHMESGLWLIR 362 Query: 365 K 365 K Sbjct: 363 K 363 >gi|229520057|ref|ZP_04409485.1| tRNA (uracil-5-)-methyltransferase [Vibrio cholerae TM 11079-80] gi|229342845|gb|EEO07835.1| tRNA (uracil-5-)-methyltransferase [Vibrio cholerae TM 11079-80] Length = 369 Score = 435 bits (1119), Expect = e-120, Method: Compositional matrix adjust. Identities = 203/358 (56%), Positives = 268/358 (74%), Gaps = 2/358 (0%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69 Y+ QLA+K+ RL+ M + + +P L++F S +YRMRAEF IWH+GDD+Y+IMF+Q+T+E Sbjct: 11 YQAQLADKIARLKAMFVDYSMPELEVFESPVANYRMRAEFRIWHEGDDMYYIMFNQETRE 70 Query: 70 RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDD 129 + R+D F S LIN LM +M ++ P+LR KLFQ+D+L++ S + +V+L+YHR L + Sbjct: 71 KYRVDQFPAASRLINDLMPLLMDAMKGSPILRHKLFQVDFLSTLSGEILVSLLYHRQLSE 130 Query: 130 AWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQ 189 W A L+ L+ + + LIGRA K K+ LDRDYV E+L V G+ IY+Q+ENSFTQ Sbjct: 131 EWITAAQALKQRLNDEGFNLNLIGRARKMKVVLDRDYVVEKLQVNGQPYIYKQVENSFTQ 190 Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249 PNA + MLEW + T+ +GDLLELYCGNGNFSL LA++F+RVLA E+AKPSVEAA++ Sbjct: 191 PNAKVAEKMLEWAVDCTQESKGDLLELYCGNGNFSLALAQNFERVLATELAKPSVEAAQF 250 Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGLDDA 307 NIAAN + NV+I+RMS++EFTQAM +REFNRLKD +D+ SYR TIFVDPPRSG+D Sbjct: 251 NIAANQIGNVQIIRMSAEEFTQAMEGKREFNRLKDAGVDLQSYRCNTIFVDPPRSGMDID 310 Query: 308 TVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 T MVQ Y ILYISCNP++L +L +L TH + R ALFDQFPYT HME GV+L RK Sbjct: 311 TCKMVQGYERILYISCNPETLKENLQVLGETHQVVRFALFDQFPYTHHMEAGVMLERK 368 >gi|262404889|ref|ZP_06081443.1| tRNA (uracil-5-)-methyltransferase [Vibrio sp. RC586] gi|262348973|gb|EEY98112.1| tRNA (uracil-5-)-methyltransferase [Vibrio sp. RC586] Length = 369 Score = 435 bits (1118), Expect = e-120, Method: Compositional matrix adjust. Identities = 202/358 (56%), Positives = 269/358 (75%), Gaps = 2/358 (0%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69 Y+ QLA+K+ RL+ M + + +P L++F S +YRMRAEF IWH+GDD+Y+IMF+Q+T+E Sbjct: 11 YQAQLADKIARLKAMFVDYSMPELEVFESPVANYRMRAEFRIWHEGDDMYYIMFNQETRE 70 Query: 70 RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDD 129 + R+D F S LIN LM +M ++ P+LR KLFQ+D+L++ S + +V+L+YHR L + Sbjct: 71 KYRVDQFPAASRLINDLMPLLMDAMKGSPILRHKLFQVDFLSTLSGEILVSLLYHRQLSE 130 Query: 130 AWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQ 189 W A L+ L+ + + LIGRA K K+ LDRDYV E+L V G+ +Y+Q+ENSFTQ Sbjct: 131 EWITAAQALKQRLNDEGFNLNLIGRARKMKMVLDRDYVVEKLQVNGQPYVYKQVENSFTQ 190 Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249 PNA + MLEW + T+ +GDLLELYCGNGNFSL LA++F+RVLA E+AKPSVEAA++ Sbjct: 191 PNAKVAEKMLEWAVDCTQESKGDLLELYCGNGNFSLALAQNFERVLATELAKPSVEAAQF 250 Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGLDDA 307 NIAAN ++NV+I+RMS++EFTQAM +REFNRLKD +D+ SYR TIFVDPPRSG+D Sbjct: 251 NIAANQIDNVQIIRMSAEEFTQAMEGKREFNRLKDAGVDLQSYRCNTIFVDPPRSGMDIN 310 Query: 308 TVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 T MVQ Y ILYISCNP++L +L +L TH + R ALFDQFPYT HME GV+L RK Sbjct: 311 TCKMVQGYERILYISCNPETLQENLQVLGETHQVVRFALFDQFPYTHHMEAGVMLERK 368 >gi|153826308|ref|ZP_01978975.1| tRNA (uracil-5-)-methyltransferase [Vibrio cholerae MZO-2] gi|149739976|gb|EDM54155.1| tRNA (uracil-5-)-methyltransferase [Vibrio cholerae MZO-2] Length = 369 Score = 434 bits (1117), Expect = e-120, Method: Compositional matrix adjust. Identities = 202/358 (56%), Positives = 268/358 (74%), Gaps = 2/358 (0%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69 Y+ QLA+K+ RL+ M + + +P L++F S +YRMRAEF IWH+GDD+Y+IMF+Q+T+E Sbjct: 11 YQAQLADKIARLKAMFVDYSMPELEVFESPVANYRMRAEFRIWHEGDDMYYIMFNQETRE 70 Query: 70 RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDD 129 + R+D F S LIN LM +M ++ P+LR KLFQ+D+L++ S + +V+L+YHR L + Sbjct: 71 KYRVDQFPAASRLINDLMPLLMDAMKGSPILRHKLFQVDFLSTLSGEILVSLLYHRQLSE 130 Query: 130 AWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQ 189 W A L+ L+ + + LIGRA K K+ LDRDYV E+L V G+ +Y+Q+ENSFTQ Sbjct: 131 EWITAAQALKQRLNDEGFNLNLIGRARKMKVVLDRDYVVEKLQVNGQPYVYKQVENSFTQ 190 Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249 PNA + MLEW + T+ +GDLLELYCGNGNFSL LA++F+RVLA E+AKPSVEAA++ Sbjct: 191 PNAKVAEKMLEWAVDCTQESKGDLLELYCGNGNFSLALAQNFERVLATELAKPSVEAAQF 250 Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGLDDA 307 NIAAN + NV+I+RMS++EFTQAM +REFNRLKD +D+ SYR TIFVDPPRSG+D Sbjct: 251 NIAANQIGNVQIIRMSAEEFTQAMEGKREFNRLKDAGVDLQSYRCNTIFVDPPRSGMDID 310 Query: 308 TVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 T MVQ Y ILYISCNP++L +L +L TH + R ALFDQFPYT HME GV+L RK Sbjct: 311 TCKMVQGYERILYISCNPETLKENLQVLGETHQVVRFALFDQFPYTHHMEAGVMLERK 368 >gi|301169567|emb|CBW29168.1| tRNA (uracil-5-)-methyltransferase [Haemophilus influenzae 10810] Length = 363 Score = 434 bits (1117), Expect = e-120, Method: Compositional matrix adjust. Identities = 203/361 (56%), Positives = 265/361 (73%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L I QY + L +K+++L ++ F P++Q+F S HYRMRAEF IWH+ DD YHIMFD Sbjct: 3 LPISQYNELLQKKLEKLTALLHPFNAPDIQVFDSPTSHYRMRAEFRIWHEQDDFYHIMFD 62 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 Q T +R R+D F S+LIN +M ++ ++ + +L KLFQIDYL++ S++ IV+L+YH Sbjct: 63 QATLQRYRVDEFPIASMLINRMMQTLLPLLKQQEVLHKKLFQIDYLSTLSNKIIVSLLYH 122 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + L + W A L+D L + + +Q+IGRA+K KIC ++DYVDE L V GR +YRQ+E Sbjct: 123 KTLTEEWESAAKNLKDLLEKQDFDVQIIGRASKQKICFEQDYVDEVLPVNGRNYVYRQVE 182 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N MLEW + T+ +GDLLELYCGNGNFS+ LA++F +VLA EIAKPSV Sbjct: 183 NSFTQPNATVNCKMLEWAIDCTQNSEGDLLELYCGNGNFSIALAQNFRKVLATEIAKPSV 242 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA++NIA N V+N++I+RMS++EFTQAM R FNRLK ID+ SY TIFVDPPR+GL Sbjct: 243 AAAQFNIAENKVDNLQIIRMSAEEFTQAMNGVRAFNRLKGIDLKSYECNTIFVDPPRAGL 302 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D TV +VQ Y ILYISCNP + C +L LS TH IE+ ALFDQFPYT HME GV L+R Sbjct: 303 DPDTVKLVQNYDRILYISCNPHTQCDNLVELSKTHRIEKAALFDQFPYTDHMESGVWLIR 362 Query: 365 K 365 K Sbjct: 363 K 363 >gi|27364587|ref|NP_760115.1| tRNA (uracil-5-)-methyltransferase [Vibrio vulnificus CMCP6] gi|33301727|sp|Q8DD43|TRMA_VIBVU RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|27360706|gb|AAO09642.1| tRNA (uracil-5-)-methyltransferase [Vibrio vulnificus CMCP6] Length = 369 Score = 434 bits (1117), Expect = e-120, Method: Compositional matrix adjust. Identities = 208/359 (57%), Positives = 266/359 (74%), Gaps = 2/359 (0%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTK 68 +Y+QQLAEKV RL M +Q P L++F S HYRMRAEF +WH+G+++Y+IMF+Q+T+ Sbjct: 10 RYQQQLAEKVQRLTDMFAPYQAPELEVFESPDQHYRMRAEFRVWHEGEEMYYIMFNQETR 69 Query: 69 ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLD 128 E+ R+D F S LIN LM ++ ++ LR KLFQ+D+L++ S + +V+L+YHR LD Sbjct: 70 EKYRVDQFPAASRLINDLMPLLIDAMKDNESLRRKLFQVDFLSTLSGEILVSLLYHRQLD 129 Query: 129 DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFT 188 DAW E A L+ L+ + + LIGRA K KI LDRDYV E+L V G+ Y+Q+ENSFT Sbjct: 130 DAWIENAKALKQRLNDEGFNLNLIGRARKMKIVLDRDYVVEKLDVNGKPYTYQQVENSFT 189 Query: 189 QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248 QPN + MLEW + T+ QGDLLELYCGNGNFSL LA++F+RVLA E+AKPSVE+A+ Sbjct: 190 QPNGKVAEKMLEWAVDCTQESQGDLLELYCGNGNFSLALAQNFERVLATELAKPSVESAQ 249 Query: 249 YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGLDD 306 YNIAAN + NV+I+RMS++EFT+AM +REF RLKD ID+ SY TIFVDPPRSG+D Sbjct: 250 YNIAANKIENVQIIRMSAEEFTEAMEGKREFRRLKDNGIDLKSYNCNTIFVDPPRSGMDV 309 Query: 307 ATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 T MVQ Y ILYISCNP++L +L ILS TH I R ALFDQFPYT HME GV+L RK Sbjct: 310 DTCKMVQGYERILYISCNPETLKENLDILSETHHITRFALFDQFPYTHHMEAGVMLERK 368 >gi|15603668|ref|NP_246742.1| tRNA (uracil-5-)-methyltransferase [Pasteurella multocida subsp. multocida str. Pm70] gi|20178160|sp|Q9CK32|TRMA_PASMU RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|12722224|gb|AAK03887.1| TrmA [Pasteurella multocida subsp. multocida str. Pm70] Length = 365 Score = 434 bits (1117), Expect = e-120, Method: Compositional matrix adjust. Identities = 204/365 (55%), Positives = 271/365 (74%) Query: 1 MSGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60 M L I+QY+ LAEK +L ++ F P L +F S HYRMRAEF IWHD D YH Sbjct: 1 MQALLPIEQYDSLLAEKQKKLTALLAPFHAPALAVFPSPVQHYRMRAEFRIWHDKGDFYH 60 Query: 61 IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVT 120 IMFDQ+T++R R+D F S LIN +M ++ ++ +L KLFQIDYL++ S++ IV+ Sbjct: 61 IMFDQRTRQRYRVDCFPMASQLINQMMDTLLPLLKTNRVLHHKLFQIDYLSTLSNKIIVS 120 Query: 121 LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIY 180 L+YH+ LD+ W + A +L+ +L + + +QLIGRA+K KICL++++VDE LTV G++ +Y Sbjct: 121 LLYHKTLDEEWEQAAKQLKASLLQQGFDLQLIGRASKQKICLEQEFVDEVLTVHGKSYVY 180 Query: 181 RQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240 RQ+ENSFTQPNA +N MLEW + T+ +GDLLELYCGNGNFS+ LA++F +VLA EIA Sbjct: 181 RQVENSFTQPNAIVNQKMLEWAVDCTQNSEGDLLELYCGNGNFSIALAQNFRKVLATEIA 240 Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300 KPSV AA++NIA N + N++I+RMS++EFTQAM REF+RLK ID+++Y TIFVDPP Sbjct: 241 KPSVAAAQFNIAENSIKNLQIIRMSAEEFTQAMNGVREFHRLKGIDLNAYECNTIFVDPP 300 Query: 301 RSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360 R+GLD+ TV +VQ Y ILYISCNP +LC +L L TH IE+ ALFDQFPYT HME GV Sbjct: 301 RAGLDEETVKLVQNYDRILYISCNPHTLCDNLQHLCQTHRIEKAALFDQFPYTEHMEAGV 360 Query: 361 LLVRK 365 L+RK Sbjct: 361 WLIRK 365 >gi|148826507|ref|YP_001291260.1| tRNA (uracil-5-)-methyltransferase [Haemophilus influenzae PittEE] gi|166988117|sp|A5UDM6|TRMA_HAEIE RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|148716667|gb|ABQ98877.1| tRNA (uracil-5-)-methyltransferase [Haemophilus influenzae PittEE] Length = 363 Score = 434 bits (1116), Expect = e-119, Method: Compositional matrix adjust. Identities = 203/361 (56%), Positives = 264/361 (73%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L I QY + L +K+++L ++ F P++Q+F S HYRMRAEF IWH+ DD YHIMFD Sbjct: 3 LPISQYNELLQKKLEKLTALLRPFNAPDIQVFDSPTSHYRMRAEFRIWHEQDDFYHIMFD 62 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 Q T +R R+D F S IN +M ++ ++ + +L KLFQIDYL++ S++ IV+L+YH Sbjct: 63 QATLQRYRVDEFPIASTQINRMMQTLLPLLKQQEVLHKKLFQIDYLSTLSNKIIVSLLYH 122 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + L + W A L+D L + + +Q+IGRA+K KIC ++DYVDE L V GR +YRQ+E Sbjct: 123 KTLTEEWESAAKNLKDLLEKQGFNVQIIGRASKQKICFEQDYVDEVLPVNGRNYVYRQVE 182 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N MLEW + T+ +GDLLELYCGNGNFS+ LA++F +VLA EIAKPSV Sbjct: 183 NSFTQPNATVNCKMLEWAIDCTQNSEGDLLELYCGNGNFSIALAQNFRKVLATEIAKPSV 242 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA++NIA N V+N++I+RMS++EFTQAM R FNRLK ID+ SY TIFVDPPR+GL Sbjct: 243 AAAQFNIAENKVDNLQIIRMSAEEFTQAMNGVRAFNRLKGIDLKSYECNTIFVDPPRAGL 302 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D TV +VQ Y ILYISCNP +LC +L LS TH IE+ ALFDQFPYT HME GV L+R Sbjct: 303 DPDTVKLVQNYDRILYISCNPHTLCDNLVELSKTHRIEKAALFDQFPYTDHMESGVWLIR 362 Query: 365 K 365 K Sbjct: 363 K 363 >gi|15640185|ref|NP_229812.1| tRNA (uracil-5-)-methyltransferase [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121591770|ref|ZP_01678974.1| tRNA (uracil-5-)-methyltransferase [Vibrio cholerae 2740-80] gi|147674711|ref|YP_001218267.1| tRNA (uracil-5-)-methyltransferase [Vibrio cholerae O395] gi|153820136|ref|ZP_01972803.1| tRNA (uracil-5-)-methyltransferase [Vibrio cholerae NCTC 8457] gi|227080389|ref|YP_002808940.1| tRNA (uracil-5-)-methyltransferase [Vibrio cholerae M66-2] gi|229508429|ref|ZP_04397933.1| tRNA (uracil-5-)-methyltransferase [Vibrio cholerae BX 330286] gi|254851540|ref|ZP_05240890.1| tRNA (uracil-5-)-methyltransferase [Vibrio cholerae MO10] gi|262167005|ref|ZP_06034723.1| tRNA (Uracil54-C5-)-methyltransferase [Vibrio cholerae RC27] gi|298501084|ref|ZP_07010884.1| tRNA (uracil-5-)-methyltransferase [Vibrio cholerae MAK 757] gi|20178172|sp|Q9KVJ0|TRMA_VIBCH RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|172047522|sp|A5F4M4|TRMA_VIBC3 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|254789081|sp|C3LPZ5|TRMA_VIBCM RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|9654556|gb|AAF93331.1| tRNA (uracil-5-)-methyltransferase [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121546367|gb|EAX56626.1| tRNA (uracil-5-)-methyltransferase [Vibrio cholerae 2740-80] gi|126509317|gb|EAZ71911.1| tRNA (uracil-5-)-methyltransferase [Vibrio cholerae NCTC 8457] gi|146316594|gb|ABQ21133.1| tRNA (uracil-5-)-methyltransferase [Vibrio cholerae O395] gi|227008277|gb|ACP04489.1| tRNA (uracil-5-)-methyltransferase [Vibrio cholerae M66-2] gi|227011845|gb|ACP08055.1| tRNA (uracil-5-)-methyltransferase [Vibrio cholerae O395] gi|229354702|gb|EEO19624.1| tRNA (uracil-5-)-methyltransferase [Vibrio cholerae BX 330286] gi|254847245|gb|EET25659.1| tRNA (uracil-5-)-methyltransferase [Vibrio cholerae MO10] gi|262024589|gb|EEY43272.1| tRNA (Uracil54-C5-)-methyltransferase [Vibrio cholerae RC27] gi|297540118|gb|EFH76179.1| tRNA (uracil-5-)-methyltransferase [Vibrio cholerae MAK 757] Length = 369 Score = 434 bits (1115), Expect = e-119, Method: Compositional matrix adjust. Identities = 202/358 (56%), Positives = 267/358 (74%), Gaps = 2/358 (0%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69 Y+ QLA+K+ RL+ M + + +P L++F S +YRMRAEF IWH+GDD+Y+IMF+Q+T+E Sbjct: 11 YQAQLADKIARLKAMFVDYSMPELEVFESPVANYRMRAEFRIWHEGDDMYYIMFNQETRE 70 Query: 70 RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDD 129 + R+D F S LIN LM +M ++ P+LR KLFQ+D+L++ S + +V+L+YHR L + Sbjct: 71 KYRVDQFPAASRLINDLMPLLMDAMKGSPILRHKLFQVDFLSTLSGEILVSLLYHRQLSE 130 Query: 130 AWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQ 189 W A L+ L+ + + LIGRA K K+ LDRDYV E L V G+ +Y+Q+ENSFTQ Sbjct: 131 EWITAAQALKQRLNDEGFNLNLIGRARKMKVVLDRDYVVENLQVNGQPYVYKQVENSFTQ 190 Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249 PNA + MLEW + T+ +GDLLELYCGNGNFSL LA++F+RVLA E+AKPSVEAA++ Sbjct: 191 PNAKVAEKMLEWAVDCTQESKGDLLELYCGNGNFSLALAQNFERVLATELAKPSVEAAQF 250 Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGLDDA 307 NIAAN + NV+I+RMS++EFTQAM +REFNRLKD +D+ SYR TIFVDPPRSG+D Sbjct: 251 NIAANQIGNVQIIRMSAEEFTQAMEGKREFNRLKDAGVDLQSYRCNTIFVDPPRSGMDID 310 Query: 308 TVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 T MVQ Y ILYISCNP++L +L +L TH + R ALFDQFPYT HME GV+L RK Sbjct: 311 TCKMVQGYERILYISCNPETLQENLQVLGETHQVVRFALFDQFPYTHHMEAGVMLERK 368 >gi|145628253|ref|ZP_01784054.1| tRNA (uracil-5-)-methyltransferase [Haemophilus influenzae 22.1-21] gi|144980028|gb|EDJ89687.1| tRNA (uracil-5-)-methyltransferase [Haemophilus influenzae 22.1-21] Length = 363 Score = 434 bits (1115), Expect = e-119, Method: Compositional matrix adjust. Identities = 202/361 (55%), Positives = 265/361 (73%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L I QY + L +K+++L ++ F P++Q+F S HYRMRAEF IWH+ DD YHIMFD Sbjct: 3 LPISQYNELLQKKLEKLTALLHPFNAPDIQVFNSPTSHYRMRAEFRIWHEQDDFYHIMFD 62 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 Q T +R R+D F S+LIN +M ++ ++ + +L KLFQIDYL++ S++ IV+L+YH Sbjct: 63 QATLKRYRVDEFPIASMLINRMMQTLLPLLKQQEVLHKKLFQIDYLSTLSNKIIVSLLYH 122 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + L + W A L+D L + + +Q+IGRA+K KIC ++DYVDE L V GR +YRQ+E Sbjct: 123 KTLTEEWESAAKNLKDLLEKQDFDVQIIGRASKQKICFEQDYVDEVLPVNGRNYVYRQVE 182 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N MLEW + T+ +GDLLELYCGNGNFS+ LA++F +VLA EIAKPSV Sbjct: 183 NSFTQPNATVNCKMLEWAIDCTQNSEGDLLELYCGNGNFSIALAQNFRKVLATEIAKPSV 242 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA++NIA N V+N++I+RMS++EFTQAM R FNRLK ID+ SY TIFVDPPR+GL Sbjct: 243 AAAQFNIAENKVDNLQIIRMSAEEFTQAMNGVRAFNRLKGIDLKSYECNTIFVDPPRAGL 302 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D TV +VQ Y ILYISCNP + C +L LS TH IE+ ALFDQFPYT HME G+ L+R Sbjct: 303 DPDTVKLVQNYDRILYISCNPHTQCDNLVELSKTHRIEKAALFDQFPYTDHMESGLWLIR 362 Query: 365 K 365 K Sbjct: 363 K 363 >gi|229508890|ref|ZP_04398380.1| tRNA (uracil-5-)-methyltransferase [Vibrio cholerae B33] gi|229606702|ref|YP_002877350.1| tRNA (uracil-5-)-methyltransferase [Vibrio cholerae MJ-1236] gi|255743897|ref|ZP_05417852.1| tRNA (uracil-5-)-methyltransferase [Vibrio cholera CIRS 101] gi|229354007|gb|EEO18940.1| tRNA (uracil-5-)-methyltransferase [Vibrio cholerae B33] gi|229369357|gb|ACQ59780.1| tRNA (uracil-5-)-methyltransferase [Vibrio cholerae MJ-1236] gi|255738380|gb|EET93770.1| tRNA (uracil-5-)-methyltransferase [Vibrio cholera CIRS 101] Length = 369 Score = 433 bits (1114), Expect = e-119, Method: Compositional matrix adjust. Identities = 202/358 (56%), Positives = 267/358 (74%), Gaps = 2/358 (0%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69 Y+ QLA+K+ RL+ M + + +P L++F S +YRMRAEF IWH+GDD+Y+IMF+Q+T+E Sbjct: 11 YQAQLADKIARLKAMFVDYSMPELEVFESPVANYRMRAEFRIWHEGDDMYYIMFNQETRE 70 Query: 70 RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDD 129 + R+D F S LIN LM +M ++ P+LR KLFQ+D+L++ S + +V+L+YHR L + Sbjct: 71 KYRVDQFPAASRLINDLMPLLMDAMKGSPILRHKLFQVDFLSTLSGEILVSLLYHRQLSE 130 Query: 130 AWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQ 189 W A L+ L+ + + LIGRA K K+ LDRDYV E L V G+ +Y+Q+ENSFTQ Sbjct: 131 EWITVAQALKQRLNDEGFNLNLIGRARKMKVVLDRDYVVENLQVNGQPYVYKQVENSFTQ 190 Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249 PNA + MLEW + T+ +GDLLELYCGNGNFSL LA++F+RVLA E+AKPSVEAA++ Sbjct: 191 PNAKVAEKMLEWAVDCTQESKGDLLELYCGNGNFSLALAQNFERVLATELAKPSVEAAQF 250 Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGLDDA 307 NIAAN + NV+I+RMS++EFTQAM +REFNRLKD +D+ SYR TIFVDPPRSG+D Sbjct: 251 NIAANQIGNVQIIRMSAEEFTQAMEGKREFNRLKDAGVDLQSYRCNTIFVDPPRSGMDID 310 Query: 308 TVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 T MVQ Y ILYISCNP++L +L +L TH + R ALFDQFPYT HME GV+L RK Sbjct: 311 TCKMVQGYERILYISCNPETLQENLQVLGETHQVVRFALFDQFPYTHHMEAGVMLERK 368 >gi|59713043|ref|YP_205819.1| tRNA (uracil-5-)-methyltransferase [Vibrio fischeri ES114] gi|197336423|ref|YP_002157222.1| tRNA (uracil-5-)-methyltransferase [Vibrio fischeri MJ11] gi|75431447|sp|Q5E215|TRMA_VIBF1 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|226705995|sp|B5FCA6|TRMA_VIBFM RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|59481144|gb|AAW86931.1| tRNA (uracil-5-)-methyltransferase [Vibrio fischeri ES114] gi|197317913|gb|ACH67360.1| tRNA (uracil-5-)-methyltransferase [Vibrio fischeri MJ11] Length = 368 Score = 433 bits (1114), Expect = e-119, Method: Compositional matrix adjust. Identities = 199/360 (55%), Positives = 266/360 (73%), Gaps = 2/360 (0%) Query: 8 DQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQT 67 + Y+ QL EK + L M F VP L++F S +YRMRAEF +WH+GD++Y++MF+Q+T Sbjct: 9 ENYQVQLDEKAEALSAMFSEFNVPELEVFSSPAENYRMRAEFRVWHEGDEMYYVMFNQET 68 Query: 68 KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLL 127 KE+ R+DYF+P S LIN LM + ++ LR K+FQ+D+L++ S + +V+++YHR L Sbjct: 69 KEKYRVDYFLPASRLINDLMPLLTEAVKESKTLRYKMFQVDFLSTLSGEILVSMLYHRQL 128 Query: 128 DDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSF 187 DDAW+E A L+ L+ + + +IGRA K KI LD+++V E+L V L Y+Q+ENSF Sbjct: 129 DDAWKEEAKALKQRLNDEGFNLNIIGRARKMKIVLDQEFVIEKLKVNDDILTYKQVENSF 188 Query: 188 TQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA 247 TQPN + MLEW + T+ QGDLLELYCGNGNFSL LA++FDRVLA E+AKPSV++A Sbjct: 189 TQPNGIVAQKMLEWAVDCTQNSQGDLLELYCGNGNFSLALAKNFDRVLATELAKPSVDSA 248 Query: 248 RYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGLD 305 +YNIAAN+++NV+I+RMS+++FT AM +REF RLKD ID+ SY TIFVDPPRSG+D Sbjct: 249 QYNIAANNIDNVQIIRMSAEDFTDAMEGKREFRRLKDQNIDLKSYNCNTIFVDPPRSGMD 308 Query: 306 DATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 + T MVQ Y I+YISCNP++L +L ILS TH I R ALFDQFPYT HME GV L RK Sbjct: 309 EGTCKMVQGYERIMYISCNPETLKENLEILSQTHNITRFALFDQFPYTHHMEAGVFLERK 368 >gi|145636589|ref|ZP_01792256.1| tRNA (uracil-5-)-methyltransferase [Haemophilus influenzae PittHH] gi|145270115|gb|EDK10051.1| tRNA (uracil-5-)-methyltransferase [Haemophilus influenzae PittHH] Length = 363 Score = 433 bits (1114), Expect = e-119, Method: Compositional matrix adjust. Identities = 202/361 (55%), Positives = 265/361 (73%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L I QY + L +K+++L ++ F P++Q+F S HYRMRAEF IWH+ DD YHIMFD Sbjct: 3 LPISQYNELLQKKLEKLTALLHPFNAPDIQVFDSPTSHYRMRAEFRIWHEQDDFYHIMFD 62 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 Q T +R R+D F S+LIN +M ++ ++ + +L KLFQIDYL++ S++ IV+L+YH Sbjct: 63 QATLQRYRVDEFPIASMLINRMMQTLLPLLKQQEVLHKKLFQIDYLSTLSNKIIVSLLYH 122 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + L + W A L+D L + + +Q+IGRA+K KIC ++DYVDE L V GR +YRQ+E Sbjct: 123 KTLAEEWESAAKNLKDLLEKQGFNVQIIGRASKQKICFEQDYVDEVLPVNGRNYVYRQVE 182 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N MLEW + T+ +GDLLELYCGNGNFS+ LA++F +VLA EIAKPSV Sbjct: 183 NSFTQPNATVNCKMLEWAIDCTQNSEGDLLELYCGNGNFSIALAQNFRKVLATEIAKPSV 242 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA++NIA N V+N++I+RMS++EFTQAM R FNRLK ID+ SY TIFVDPPR+GL Sbjct: 243 AAAQFNIAENKVDNLQIIRMSAEEFTQAMNGVRAFNRLKGIDLKSYECNTIFVDPPRAGL 302 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D TV +VQ Y ILYISCNP + C +L LS TH IE+ ALFDQFPYT HME G+ L+R Sbjct: 303 DPDTVKLVQNYDRILYISCNPHTQCDNLVELSKTHRIEKAALFDQFPYTDHMESGLWLIR 362 Query: 365 K 365 K Sbjct: 363 K 363 >gi|229527105|ref|ZP_04416499.1| tRNA (uracil-5-)-methyltransferase [Vibrio cholerae 12129(1)] gi|229335336|gb|EEO00819.1| tRNA (uracil-5-)-methyltransferase [Vibrio cholerae 12129(1)] Length = 369 Score = 433 bits (1114), Expect = e-119, Method: Compositional matrix adjust. Identities = 202/358 (56%), Positives = 267/358 (74%), Gaps = 2/358 (0%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69 Y+ QLA+K+ RL+ M + + +P L++F S +YRMRAEF IWH+GDD+Y+IMF+Q+T+E Sbjct: 11 YQAQLADKIARLKAMFVDYSMPKLEVFESPVANYRMRAEFRIWHEGDDMYYIMFNQETRE 70 Query: 70 RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDD 129 + R+D F S LIN LM +M ++ P+LR KLFQ+D+L++ S + +V+L+YHR L + Sbjct: 71 KYRVDQFPAASRLINDLMPLLMDAMKGSPILRHKLFQVDFLSTLSGEILVSLLYHRQLSE 130 Query: 130 AWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQ 189 W A L+ L+ + + LIGRA K K+ LDRDYV E+L V G+ +Y+Q+ENSFTQ Sbjct: 131 EWITAAQALKQRLNDEGFNLNLIGRARKMKVVLDRDYVVEKLQVNGQPYVYKQVENSFTQ 190 Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249 PNA + MLEW + T +GDLLELYCGNGNFSL LA++F+RVLA E+AKPSVEAA++ Sbjct: 191 PNAKVAEKMLEWAVDCTHESKGDLLELYCGNGNFSLALAQNFERVLATELAKPSVEAAQF 250 Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGLDDA 307 NIAAN + NV+I+RMS++EFTQAM +REFNRLKD +D+ SYR TIFVDPPRSG+D Sbjct: 251 NIAANQIGNVQIIRMSAEEFTQAMEGKREFNRLKDAGVDLQSYRCNTIFVDPPRSGMDID 310 Query: 308 TVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 T MVQ Y ILYISCNP++L +L +L TH + R ALFDQFPYT HME GV+L RK Sbjct: 311 TCKMVQGYERILYISCNPETLQENLQVLGETHQVVRFALFDQFPYTHHMEAGVMLERK 368 >gi|319775220|ref|YP_004137708.1| tRNA (uracil-5-)-methyltransferase [Haemophilus influenzae F3047] gi|317449811|emb|CBY86019.1| tRNA (uracil-5-)-methyltransferase [Haemophilus influenzae F3047] Length = 363 Score = 433 bits (1114), Expect = e-119, Method: Compositional matrix adjust. Identities = 203/361 (56%), Positives = 265/361 (73%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L I QY + L +K+++L ++ F P++Q+F S HYRMRAEF IWH+ DD YHIMFD Sbjct: 3 LPIFQYNELLQKKLEKLTALLRPFNAPDIQVFDSPTNHYRMRAEFRIWHEQDDFYHIMFD 62 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 Q T +R R+D F S+LIN +M ++ ++ + +L KLFQIDYL++ S++ IV+L+YH Sbjct: 63 QATLQRYRVDEFPIASMLINRMMQTLLPLLKQQEVLHKKLFQIDYLSTLSNKIIVSLLYH 122 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + L + W A L+D L + + +Q+IGRA+K KIC ++DYVDE L V GR +YRQ+E Sbjct: 123 KTLTEEWESAAKNLKDLLEKQDFDVQIIGRASKQKICFEQDYVDEVLPVNGRNYVYRQVE 182 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N MLEW + T+ +GDLLELYCGNGNFS+ LA++F +VLA EIAKPSV Sbjct: 183 NSFTQPNATVNCKMLEWAIDCTQNSEGDLLELYCGNGNFSIALAQNFRKVLATEIAKPSV 242 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA++NIA N V+N++I+RMS++EFTQAM R FNRLK ID+ SY TIFVDPPR+GL Sbjct: 243 AAAQFNIAENKVDNLQIIRMSAEEFTQAMNGVRAFNRLKGIDLKSYECNTIFVDPPRAGL 302 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D TV +VQ Y ILYISCNP + C +L LS TH IE+ ALFDQFPYT HME GV L+R Sbjct: 303 DPDTVKLVQNYDRILYISCNPHTQCDNLVELSKTHCIEKAALFDQFPYTDHMESGVWLIR 362 Query: 365 K 365 K Sbjct: 363 K 363 >gi|262163703|ref|ZP_06031444.1| tRNA (uracil-5-)-methyltransferase [Vibrio mimicus VM223] gi|262027919|gb|EEY46583.1| tRNA (uracil-5-)-methyltransferase [Vibrio mimicus VM223] Length = 369 Score = 433 bits (1113), Expect = e-119, Method: Compositional matrix adjust. Identities = 201/358 (56%), Positives = 268/358 (74%), Gaps = 2/358 (0%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69 Y+ QLA+K+ RL+ M + + +P L++F S +YRMRAEF IWH+GDD+Y+IMF+Q+T+E Sbjct: 11 YQAQLADKIARLKAMFVNYSMPELEVFESPVANYRMRAEFRIWHEGDDMYYIMFNQETRE 70 Query: 70 RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDD 129 + R+D F S LIN LM +M ++ +LR KLFQ+D+L++ S + +V+L+YHR L++ Sbjct: 71 KYRVDQFPAASRLINDLMPLLMDAMKGSHILRHKLFQVDFLSTLSGEVLVSLLYHRQLNE 130 Query: 130 AWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQ 189 W A L+ L+ + + LIGRA K K+ LDRDYV E+L V G+ +Y+Q+ENSFTQ Sbjct: 131 EWNTAAQALKQRLNDEGFNLNLIGRARKMKVVLDRDYVVEKLQVNGQPYVYKQVENSFTQ 190 Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249 PNA + MLEW + T+ GDLLELYCGNGNFSL LA++FDRVLA E+AKPSVEAA++ Sbjct: 191 PNAKVAEKMLEWAVDCTQDSNGDLLELYCGNGNFSLALAQNFDRVLATELAKPSVEAAQF 250 Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGLDDA 307 NIAAN ++NV+I+RMS++EFTQAM +REFNRLKD +++ SYR TIFVDPPRSG+D Sbjct: 251 NIAANQIDNVQIIRMSAEEFTQAMEGKREFNRLKDAGVNLQSYRCNTIFVDPPRSGMDID 310 Query: 308 TVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 T MVQ Y ILYISCNP++L +L +L TH + R ALFDQFPYT HME GV+L RK Sbjct: 311 TCKMVQGYERILYISCNPETLQENLQVLGETHQVVRFALFDQFPYTHHMEAGVMLERK 368 >gi|145638350|ref|ZP_01793960.1| tRNA (uracil-5-)-methyltransferase [Haemophilus influenzae PittII] gi|145272679|gb|EDK12586.1| tRNA (uracil-5-)-methyltransferase [Haemophilus influenzae PittII] gi|309751491|gb|ADO81475.1| tRNA m(5)U54 methyltransferase [Haemophilus influenzae R2866] Length = 363 Score = 433 bits (1113), Expect = e-119, Method: Compositional matrix adjust. Identities = 202/361 (55%), Positives = 265/361 (73%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L I QY + L +K+++L ++ F P++Q+F S HYRMRAEF IWH+ DD YHIMFD Sbjct: 3 LPISQYNELLQKKLEKLTALLHPFNAPDIQVFDSPTSHYRMRAEFRIWHEQDDFYHIMFD 62 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 Q T +R R+D F S+LIN +M ++ ++ + +L KLFQIDYL++ S++ IV+L+YH Sbjct: 63 QATLKRYRVDEFPIASMLINRMMQTLLPLLKQQEVLHKKLFQIDYLSTLSNKIIVSLLYH 122 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + L + W A L+D L + + +Q+IGRA+K KIC ++DYVDE L V GR +YRQ+E Sbjct: 123 KTLTEEWESAAKNLKDLLEKQDFDVQIIGRASKQKICFEQDYVDEVLPVNGRNYVYRQVE 182 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N MLEW + T+ +GDLLELYCGNGNFS+ LA++F +VLA EIAKPSV Sbjct: 183 NSFTQPNATVNCKMLEWAIDCTQNSEGDLLELYCGNGNFSIALAQNFRKVLATEIAKPSV 242 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA++NIA N V+N++I+RMS++EFTQAM R FNRLK ID+ SY TIFVDPPR+GL Sbjct: 243 AAAQFNIAENKVDNLQIIRMSAEEFTQAMNGVRAFNRLKGIDLKSYECNTIFVDPPRAGL 302 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D TV +VQ Y ILYISCNP + C +L LS TH IE+ ALFDQFPYT HME G+ L+R Sbjct: 303 DPDTVKLVQNYDRILYISCNPHTQCDNLVELSKTHRIEKAALFDQFPYTDHMESGLWLIR 362 Query: 365 K 365 K Sbjct: 363 K 363 >gi|28899713|ref|NP_799318.1| tRNA (uracil-5-)-methyltransferase [Vibrio parahaemolyticus RIMD 2210633] gi|260361664|ref|ZP_05774691.1| tRNA (uracil-5-)-methyltransferase [Vibrio parahaemolyticus K5030] gi|260879374|ref|ZP_05891729.1| tRNA (uracil-5-)-methyltransferase [Vibrio parahaemolyticus AN-5034] gi|260897201|ref|ZP_05905697.1| tRNA (uracil-5-)-methyltransferase [Vibrio parahaemolyticus Peru-466] gi|33301718|sp|Q87KN8|TRMA_VIBPA RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|28807965|dbj|BAC61202.1| tRNA (uracil-5-)-methyltransferase [Vibrio parahaemolyticus RIMD 2210633] gi|308089331|gb|EFO39026.1| tRNA (uracil-5-)-methyltransferase [Vibrio parahaemolyticus Peru-466] gi|308092833|gb|EFO42528.1| tRNA (uracil-5-)-methyltransferase [Vibrio parahaemolyticus AN-5034] gi|308111286|gb|EFO48826.1| tRNA (uracil-5-)-methyltransferase [Vibrio parahaemolyticus K5030] gi|328472459|gb|EGF43325.1| tRNA (uracil-5-)-methyltransferase [Vibrio parahaemolyticus 10329] Length = 369 Score = 433 bits (1113), Expect = e-119, Method: Compositional matrix adjust. Identities = 204/359 (56%), Positives = 268/359 (74%), Gaps = 2/359 (0%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTK 68 +Y++QLAEKV+RL M + VP L++F S HYRMRAEF +WH+G+DLY+IMF+Q+T+ Sbjct: 10 RYQEQLAEKVERLTDMFAPYNVPELEVFESPEQHYRMRAEFRVWHEGEDLYYIMFNQETR 69 Query: 69 ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLD 128 E+ R+D F S LIN LM ++ ++ LR KLFQ+D+L++ S + +V+L+YHR LD Sbjct: 70 EKYRVDQFPAASRLINDLMPLLVEAMKDNESLRRKLFQVDFLSTLSGEILVSLLYHRQLD 129 Query: 129 DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFT 188 + W E A L+ L+ + + +IGRA K KI LDRDYV E+L V G++ IY+Q+ENSFT Sbjct: 130 EEWIENAKALKQRLNDEGFNLNIIGRARKMKIILDRDYVIEKLDVNGQSYIYQQVENSFT 189 Query: 189 QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248 QPN + MLEW + T+ GDLLELYCGNGNFSL LA++FDRVLA E+AKPSVE+A+ Sbjct: 190 QPNGKVAEKMLEWAVDCTQESTGDLLELYCGNGNFSLALAQNFDRVLATELAKPSVESAQ 249 Query: 249 YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGLDD 306 YNIAAN ++NV+I+RMS++EFT+AM +REF RLKD +D+ SY TIFVDPPR+G+D Sbjct: 250 YNIAANKIDNVQIIRMSAEEFTEAMEGKREFRRLKDNGVDLKSYNCNTIFVDPPRAGMDV 309 Query: 307 ATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 T MVQ Y I+YISCNP++L +L ILS TH + R ALFDQFPYT HME GVLL RK Sbjct: 310 DTCKMVQGYERIMYISCNPETLKENLDILSETHNVTRFALFDQFPYTHHMEAGVLLERK 368 >gi|319897658|ref|YP_004135855.1| tRNA (uracil-5-)-methyltransferase [Haemophilus influenzae F3031] gi|317433164|emb|CBY81538.1| tRNA (uracil-5-)-methyltransferase [Haemophilus influenzae F3031] Length = 363 Score = 432 bits (1112), Expect = e-119, Method: Compositional matrix adjust. Identities = 203/361 (56%), Positives = 265/361 (73%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L I QY + L +K+++L ++ F P++Q+F S HYRMRAEF IWH+ DD YHIMFD Sbjct: 3 LPIFQYNELLQKKLEKLTALLRPFNAPDIQVFDSPTNHYRMRAEFRIWHEQDDFYHIMFD 62 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 Q T +R R+D F S+LIN +M ++ ++ + +L KLFQIDYL++ S++ IV+L+YH Sbjct: 63 QATLQRYRVDEFPIASMLINRMMQTLLPLLKQQEVLHKKLFQIDYLSTLSNKIIVSLLYH 122 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + L + W A L+D L + + +Q+IGRA+K KIC ++DYVDE L V GR +YRQ+E Sbjct: 123 KTLTEEWESAAKNLKDLLEKQDFDVQIIGRASKQKICFEQDYVDEVLPVNGRNYVYRQVE 182 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N MLEW + T+ +GDLLELYCGNGNFS+ LA++F +VLA EIAKPSV Sbjct: 183 NSFTQPNATVNCKMLEWAIDCTQNSEGDLLELYCGNGNFSIALAQNFRKVLATEIAKPSV 242 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA++NIA N V+N++I+RMS++EFTQAM R FNRLK ID+ SY TIFVDPPR+GL Sbjct: 243 AAAQFNIAENKVDNLQIIRMSAEEFTQAMNGVRAFNRLKGIDLKSYECNTIFVDPPRAGL 302 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D TV +VQ Y ILYISCNP + C +L LS TH IE+ ALFDQFPYT HME GV L+R Sbjct: 303 DPDTVKLVQNYDRILYISCNPHTQCDNLVELSKTHRIEKAALFDQFPYTDHMESGVWLIR 362 Query: 365 K 365 K Sbjct: 363 K 363 >gi|254292223|ref|ZP_04962988.1| tRNA (uracil-5-)-methyltransferase [Vibrio cholerae AM-19226] gi|150421859|gb|EDN13841.1| tRNA (uracil-5-)-methyltransferase [Vibrio cholerae AM-19226] Length = 369 Score = 432 bits (1112), Expect = e-119, Method: Compositional matrix adjust. Identities = 202/358 (56%), Positives = 266/358 (74%), Gaps = 2/358 (0%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69 Y+ QLA+K+ RL+ M + +P L++F S +YRMRAEF IWH+GDD+Y+IMF+Q+T+E Sbjct: 11 YQAQLADKIARLKAMFADYSMPELEVFESPVANYRMRAEFRIWHEGDDMYYIMFNQETRE 70 Query: 70 RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDD 129 + R+D F S LIN LM +M ++ P+LR KLFQ+D+L++ S + +V+L+YHR L + Sbjct: 71 KYRVDQFPAASRLINDLMPLLMDAMKGSPILRHKLFQVDFLSTLSGEILVSLLYHRQLSE 130 Query: 130 AWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQ 189 W A L+ L+ + + LIGRA K K+ LDRDYV E+L V G+ +Y+Q+ENSFTQ Sbjct: 131 EWITAAQALKQRLNDEGFNLNLIGRARKMKVVLDRDYVVEKLQVNGQPYVYKQVENSFTQ 190 Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249 PNA + MLEW + T +GDLLELYCGNGNFSL LA++F+RVLA E+AKPSVEAA++ Sbjct: 191 PNAKVAEKMLEWAVDCTHESKGDLLELYCGNGNFSLALAQNFERVLATELAKPSVEAAQF 250 Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGLDDA 307 NIAAN + NV+I+RMS++EFTQAM +REFNRLKD +D+ SYR TIFVDPPRSG+D Sbjct: 251 NIAANQIGNVQIIRMSAEEFTQAMEGKREFNRLKDAGVDLQSYRCNTIFVDPPRSGMDID 310 Query: 308 TVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 T MVQ Y ILYISCNP++L +L +L TH + R ALFDQFPYT HME GV+L RK Sbjct: 311 TCKMVQGYERILYISCNPETLKENLQVLGETHQVVRFALFDQFPYTHHMEAGVMLERK 368 >gi|145630596|ref|ZP_01786376.1| tRNA (uracil-5-)-methyltransferase [Haemophilus influenzae R3021] gi|144983986|gb|EDJ91428.1| tRNA (uracil-5-)-methyltransferase [Haemophilus influenzae R3021] Length = 363 Score = 432 bits (1112), Expect = e-119, Method: Compositional matrix adjust. Identities = 202/361 (55%), Positives = 265/361 (73%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L I QY + L +K+++L ++ F P++Q+F S HYRMRAEF IWH+ DD YHIMFD Sbjct: 3 LPISQYNELLQKKLEKLTALLHPFNAPDIQVFDSPTSHYRMRAEFRIWHEQDDFYHIMFD 62 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 Q T +R R+D F S+LIN +M ++ ++ + +L KLFQIDYL++ S++ IV+L+YH Sbjct: 63 QATLQRYRVDEFPIASMLINRMMQTLLPLLKQQEVLHKKLFQIDYLSTLSNKIIVSLLYH 122 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + L + W A L+D L + + +Q+IGRA+K KIC ++DYVDE L V GR +YRQ+E Sbjct: 123 KTLTEEWESAAKNLKDLLKEQGFDVQIIGRASKQKICFEQDYVDEVLPVNGRNYVYRQVE 182 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N MLEW + T+ +GDLLELYCGNGNFS+ LA++F +VLA EIAKPSV Sbjct: 183 NSFTQPNATVNCKMLEWAIDCTQNSEGDLLELYCGNGNFSIALAQNFRKVLATEIAKPSV 242 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA++NIA N V+N++I+RMS++EFTQAM R FNRLK ID+ SY TIFVDPPR+GL Sbjct: 243 AAAQFNIAENKVDNLQIIRMSAEEFTQAMNGVRAFNRLKGIDLKSYECNTIFVDPPRAGL 302 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D TV +VQ Y ILYISCNP + C +L LS TH IE+ ALFDQFPYT HME G+ L+R Sbjct: 303 DPDTVKLVQNYDRILYISCNPHTQCDNLVELSKTHRIEKAALFDQFPYTDHMESGLWLIR 362 Query: 365 K 365 K Sbjct: 363 K 363 >gi|254227154|ref|ZP_04920690.1| tRNA (uracil-5-)-methyltransferase [Vibrio cholerae V51] gi|125620322|gb|EAZ48720.1| tRNA (uracil-5-)-methyltransferase [Vibrio cholerae V51] Length = 369 Score = 432 bits (1112), Expect = e-119, Method: Compositional matrix adjust. Identities = 201/357 (56%), Positives = 267/357 (74%), Gaps = 2/357 (0%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69 Y+ QLA+K+ RL+ M + + +P L++F S +YRMRAEF IWH+GDD+Y+IMF+Q+T+E Sbjct: 11 YQAQLADKIARLKAMFVDYSMPELEVFESPVANYRMRAEFRIWHEGDDMYYIMFNQETRE 70 Query: 70 RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDD 129 + R+D F S LIN LM +M ++ P+LR KLFQ+D+L++ S + +V+L+YHR L + Sbjct: 71 KYRVDQFPAASRLINDLMPLLMDAMKGSPILRHKLFQVDFLSTLSGEILVSLLYHRQLSE 130 Query: 130 AWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQ 189 W A L+ L+ + + LIGRA K K+ LDRDYV E+L V G+ +Y+Q+ENSFTQ Sbjct: 131 EWISAAQALKQRLNDEGFNLNLIGRARKMKVVLDRDYVVEKLQVNGQPYVYKQVENSFTQ 190 Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249 PNA + MLEW + T+ +GDLLELYCGNGNFSL LA++F+RVLA E+AKPSVEAA++ Sbjct: 191 PNAKVAEKMLEWAVDCTQENKGDLLELYCGNGNFSLALAQNFERVLATELAKPSVEAAQF 250 Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGLDDA 307 NIAAN + NV+I+RMS++EFTQAM +REFNRLKD +D+ SYR TIFVDPPRSG+D Sbjct: 251 NIAANQIGNVQIIRMSAEEFTQAMEGKREFNRLKDAGVDLQSYRCNTIFVDPPRSGMDID 310 Query: 308 TVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 T MVQ Y ILYISCNP++L +L +L TH + R ALFDQFPYT HME GV+L R Sbjct: 311 TCKMVQGYERILYISCNPETLQENLQVLGETHQVVRFALFDQFPYTHHMEAGVMLER 367 >gi|258622817|ref|ZP_05717834.1| tRNA (uracil-5-)-methyltransferase [Vibrio mimicus VM573] gi|258584878|gb|EEW09610.1| tRNA (uracil-5-)-methyltransferase [Vibrio mimicus VM573] Length = 369 Score = 432 bits (1112), Expect = e-119, Method: Compositional matrix adjust. Identities = 201/358 (56%), Positives = 268/358 (74%), Gaps = 2/358 (0%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69 Y+ QLA+K+ RL+ M + + +P L++F S +YRMRAEF IWH+GDD+Y+IMF+Q+T+E Sbjct: 11 YQAQLADKIARLKAMFVNYSMPELEVFESPVANYRMRAEFRIWHEGDDMYYIMFNQETRE 70 Query: 70 RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDD 129 + R+D F S LIN LM +M ++ +LR KLFQ+D+L++ S + +V+L+YHR L++ Sbjct: 71 KYRVDQFPAASRLINDLMPLLMDAMKGSHILRHKLFQVDFLSTLSGEVLVSLLYHRQLNE 130 Query: 130 AWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQ 189 W A L+ L+ + + LIGRA K K+ LDRDYV E+L V G+ +Y+Q+ENSFTQ Sbjct: 131 EWVTAAQALKQRLNDEGFNLNLIGRARKMKVVLDRDYVVEKLQVNGQPYVYKQVENSFTQ 190 Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249 PNA + MLEW + T+ GDLLELYCGNGNFSL LA++FDRVLA E+AKPSVEAA++ Sbjct: 191 PNAKVAEKMLEWAVDCTQDSNGDLLELYCGNGNFSLALAQNFDRVLATELAKPSVEAAQF 250 Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGLDDA 307 NIAAN ++NV+I+RMS++EFTQAM +REFNRLKD +++ SYR TIFVDPPRSG+D Sbjct: 251 NIAANQIDNVQIIRMSAEEFTQAMEGKREFNRLKDAGVNLQSYRCNTIFVDPPRSGMDID 310 Query: 308 TVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 T MVQ Y ILYISCNP++L +L +L TH + R ALFDQFPYT HME GV+L RK Sbjct: 311 TCKMVQGYERILYISCNPETLQENLQVLGETHQVVRFALFDQFPYTHHMEAGVMLERK 368 >gi|260771656|ref|ZP_05880576.1| tRNA (Uracil54-C5-)-methyltransferase [Vibrio metschnikovii CIP 69.14] gi|260613433|gb|EEX38632.1| tRNA (Uracil54-C5-)-methyltransferase [Vibrio metschnikovii CIP 69.14] Length = 369 Score = 432 bits (1111), Expect = e-119, Method: Compositional matrix adjust. Identities = 204/360 (56%), Positives = 268/360 (74%), Gaps = 2/360 (0%) Query: 8 DQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQT 67 + Y QLAEK+ RL +M + VP L++F S +YRMRAEF +WH+GD++Y++MF+ T Sbjct: 9 EHYSAQLAEKITRLTEMFQPYHVPKLEVFESPKQYYRMRAEFRVWHEGDEMYYVMFNPTT 68 Query: 68 KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLL 127 +E+ R+D F S LIN LM ++ ++ LR KLFQ+D+L++ S + +V+LIYHR L Sbjct: 69 REKYRVDQFPAASRLINDLMPLLIEAMQGNKTLRHKLFQVDFLSTLSGELLVSLIYHRQL 128 Query: 128 DDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSF 187 D+AW A +L+ L+ + + +IGRA K KI LDRDYV E+L V + +Y+Q+ENSF Sbjct: 129 DEAWTSEAKQLKQRLNDEGFNLNVIGRARKMKIVLDRDYVVEKLHVNDKAYLYQQVENSF 188 Query: 188 TQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA 247 TQPN + MLEW + T+ QGDLLELYCGNGNFSL LA++FDRVLA E+AKPSVE+A Sbjct: 189 TQPNGKVAEKMLEWAVDCTQESQGDLLELYCGNGNFSLALAQNFDRVLATELAKPSVESA 248 Query: 248 RYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGLD 305 +YNIAANH++NV+I+RMS+++FTQAM +REFNRLK+ ID+ SYR TIFVDPPR+G+D Sbjct: 249 QYNIAANHIDNVQIIRMSAEDFTQAMEGKREFNRLKEAGIDLKSYRCNTIFVDPPRAGMD 308 Query: 306 DATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 T MVQ Y ILYISCNP++L +L ILSTTH I R ALFDQFPYT HME GV+L RK Sbjct: 309 VDTCKMVQGYERILYISCNPETLKENLDILSTTHNITRFALFDQFPYTHHMEAGVMLERK 368 >gi|229844717|ref|ZP_04464856.1| tRNA (uracil-5-)-methyltransferase [Haemophilus influenzae 6P18H1] gi|229812431|gb|EEP48121.1| tRNA (uracil-5-)-methyltransferase [Haemophilus influenzae 6P18H1] Length = 363 Score = 432 bits (1111), Expect = e-119, Method: Compositional matrix adjust. Identities = 202/361 (55%), Positives = 264/361 (73%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L I QY + L +K+++L ++ F P++Q+F S HYRMRAEF IWH+ D YHIMFD Sbjct: 3 LPISQYNELLQKKLEKLTALLHPFNAPDIQVFDSPTSHYRMRAEFRIWHEQSDFYHIMFD 62 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 Q T +R R+D F S LIN +M ++ ++ + +L KLFQIDYL++ S++ IV+L+YH Sbjct: 63 QATLQRYRVDEFPIASTLINRMMQILLPLLKQQEVLHKKLFQIDYLSTLSNKIIVSLLYH 122 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + L + W A L+D L + + +Q+IGRA+K KIC ++DYVDE L V GR +YRQ+E Sbjct: 123 KTLTEEWESAAKNLKDLLEKQDFDVQIIGRASKQKICFEQDYVDEVLPVNGRNYVYRQVE 182 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N MLEW + T+ +GDLLELYCGNGNFS+ LA++F +VLA EI+KPSV Sbjct: 183 NSFTQPNATVNCKMLEWAIDCTQNSEGDLLELYCGNGNFSIALAQNFRKVLATEISKPSV 242 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA++NIA N V+N++I+RMS++EFTQAM R FNRLK ID+ SY TIFVDPPR+GL Sbjct: 243 AAAQFNIAENKVDNLQIIRMSAEEFTQAMNGARAFNRLKGIDLKSYECNTIFVDPPRAGL 302 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D TV +VQ Y ILYISCNP +LC +L LS TH IE+ ALFDQFPYT HME GV L+R Sbjct: 303 DPDTVKLVQNYDRILYISCNPHTLCDNLVELSKTHRIEKAALFDQFPYTDHMESGVWLIR 362 Query: 365 K 365 K Sbjct: 363 K 363 >gi|297581790|ref|ZP_06943711.1| tRNA (uracil-5-)-methyltransferase [Vibrio cholerae RC385] gi|297533884|gb|EFH72724.1| tRNA (uracil-5-)-methyltransferase [Vibrio cholerae RC385] Length = 369 Score = 432 bits (1110), Expect = e-119, Method: Compositional matrix adjust. Identities = 201/357 (56%), Positives = 266/357 (74%), Gaps = 2/357 (0%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69 Y+ QLA+K+ RL+ M + + +P L++F S +YRMRAEF IWH+GDD+Y+IMF+Q+T+E Sbjct: 11 YQAQLADKIARLKAMFVDYSMPELEVFESPVANYRMRAEFRIWHEGDDMYYIMFNQETRE 70 Query: 70 RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDD 129 + R+D F S LIN LM +M ++ P+LR KLFQ+D+L++ S + +V+L+YHR L + Sbjct: 71 KYRVDQFPAASRLINDLMPLLMDAMKGSPILRHKLFQVDFLSTLSGEILVSLLYHRQLSE 130 Query: 130 AWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQ 189 W A L+ L+ + + LIGRA K K+ LDRDYV E+L V G+ +Y+Q+ENSFTQ Sbjct: 131 EWITAAQALKQRLNDEGFNLNLIGRARKMKVVLDRDYVVEKLQVNGQPYVYKQVENSFTQ 190 Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249 PNA + MLEW + T+ +GDLLELYCGNGNFSL LA++F+RVLA E+AKPSVEAA++ Sbjct: 191 PNAKVAEKMLEWAVDCTQESKGDLLELYCGNGNFSLALAQNFERVLATELAKPSVEAAQF 250 Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGLDDA 307 NIAAN + NV+I+RMS++EFTQAM +REFNRLKD +D+ SYR TIFVDPPRSG+D Sbjct: 251 NIAANQIGNVQIIRMSAEEFTQAMEGKREFNRLKDAGVDLQSYRCNTIFVDPPRSGMDID 310 Query: 308 TVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 T MVQ Y ILYISCNP++L +L +L TH + R ALFDQFPY HME GVLL R Sbjct: 311 TCKMVQGYERILYISCNPETLQENLQVLGETHQVVRFALFDQFPYAHHMEAGVLLER 367 >gi|262172910|ref|ZP_06040588.1| tRNA (uracil-5-)-methyltransferase [Vibrio mimicus MB-451] gi|261893986|gb|EEY39972.1| tRNA (uracil-5-)-methyltransferase [Vibrio mimicus MB-451] Length = 369 Score = 432 bits (1110), Expect = e-119, Method: Compositional matrix adjust. Identities = 201/358 (56%), Positives = 268/358 (74%), Gaps = 2/358 (0%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69 Y+ QLA+K+ RL+ M + + +P L++F S +YRMRAEF IWH+GDD+Y+IMF+Q+T+E Sbjct: 11 YQAQLADKIARLKAMFVNYSMPELEVFESPVANYRMRAEFRIWHEGDDMYYIMFNQETRE 70 Query: 70 RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDD 129 + R+D F S LIN LM +M ++ +LR KLFQ+D+L++ S + +V+L+YHR L++ Sbjct: 71 KYRVDQFPAASRLINDLMPLLMDAMKGSHILRHKLFQVDFLSTLSGEVLVSLLYHRQLNE 130 Query: 130 AWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQ 189 W A L+ L+ + + LIGRA K K+ LDRDYV E+L V G+ +Y+Q+ENSFTQ Sbjct: 131 EWITAAQALKQRLNDEGFNLNLIGRARKMKVVLDRDYVVEKLQVNGQPYVYKQVENSFTQ 190 Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249 PNA + MLEW + T+ GDLLELYCGNGNFSL LA++FDRVLA E+AKPSVEAA++ Sbjct: 191 PNAKVAEKMLEWAVDCTQDSNGDLLELYCGNGNFSLALAQNFDRVLATELAKPSVEAAQF 250 Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGLDDA 307 NIAAN ++NV+I+RMS++EFTQAM +REFNRLKD +++ SYR TIFVDPPRSG+D Sbjct: 251 NIAANQIDNVQIIRMSAEEFTQAMEGKREFNRLKDAGVNLQSYRCNTIFVDPPRSGMDID 310 Query: 308 TVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 T MVQ Y ILYISCNP++L +L +L TH + R ALFDQFPYT HME GV+L RK Sbjct: 311 TCKMVQGYERILYISCNPETLQENLQVLGETHQVVRFALFDQFPYTHHMEAGVILERK 368 >gi|119773334|ref|YP_926074.1| tRNA (uracil-5-)-methyltransferase [Shewanella amazonensis SB2B] gi|262827940|sp|A1S1Z8|TRMA_SHEAM RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|119765834|gb|ABL98404.1| tRNA (uracil-5-)-methyltransferase [Shewanella amazonensis SB2B] Length = 365 Score = 431 bits (1108), Expect = e-119, Method: Compositional matrix adjust. Identities = 205/357 (57%), Positives = 260/357 (72%), Gaps = 1/357 (0%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTK 68 QYEQQL +K L + + P L++F S P HYRMR EF +WHDGDDLY+ MFD K Sbjct: 10 QYEQQLEQKCQALTEAFAHYNPPALEVFPSAPAHYRMRCEFRVWHDGDDLYYCMFDNVAK 69 Query: 69 ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLD 128 E++R D F+P S LIN +M ++ +R LR KLFQ+D+L++ S + +V+L+YHR LD Sbjct: 70 EKVRTDQFLPASELINRMMPALLDELRPNRALRHKLFQVDFLSTLSGEILVSLLYHRQLD 129 Query: 129 DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFT 188 D W A L+ L +++ +IGRA K K LDRD+V E L V G+TL Y+Q+ENSFT Sbjct: 130 DQWLTEARALKARL-GEHFKVDIIGRARKQKFVLDRDFVVESLDVDGKTLHYKQVENSFT 188 Query: 189 QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248 QPNAG+ V MLEW L ATK GDLLELYCGNGNFS+ LA +F +VLA E+AKPSVEAA+ Sbjct: 189 QPNAGVAVKMLEWALDATKQSSGDLLELYCGNGNFSIALAPNFGKVLATELAKPSVEAAQ 248 Query: 249 YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDAT 308 YNI N V+N+ IVRMS++EFT+AM+ E+ FNRL DID+ SY+ TIFVDPPR+GLDD T Sbjct: 249 YNIQVNKVSNLDIVRMSAEEFTEAMKGEKRFNRLGDIDLQSYQCNTIFVDPPRAGLDDET 308 Query: 309 VGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 V +VQ Y +ILYISCNPD+L +L +LS TH + R ALFDQFPYT H E GV+L R+ Sbjct: 309 VKLVQGYENILYISCNPDTLNDNLKVLSETHEVVRFALFDQFPYTHHTEAGVMLKRR 365 >gi|260774785|ref|ZP_05883687.1| tRNA (Uracil54-C5-)-methyltransferase [Vibrio coralliilyticus ATCC BAA-450] gi|260609210|gb|EEX35365.1| tRNA (Uracil54-C5-)-methyltransferase [Vibrio coralliilyticus ATCC BAA-450] Length = 369 Score = 431 bits (1108), Expect = e-118, Method: Compositional matrix adjust. Identities = 203/356 (57%), Positives = 267/356 (75%), Gaps = 2/356 (0%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTK 68 +Y++QLAEKV+RL +M + VP L++F S HYRMRAEF +WH+GDDLY+IMF+Q+T+ Sbjct: 10 RYQEQLAEKVERLNEMFAPYHVPELEVFESPEQHYRMRAEFRVWHEGDDLYYIMFNQETR 69 Query: 69 ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLD 128 E+ R+D F S LIN LM ++ ++ LR KLFQ+D+L++ S + +V+L+YHR LD Sbjct: 70 EKYRVDQFPAASRLINDLMPLLIDAMKDNDSLRRKLFQVDFLSTLSGEILVSLLYHRQLD 129 Query: 129 DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFT 188 D W + A L+ L+ + + LIGRA K KI LDRDYV E+L V G+ +Y+Q+ENSFT Sbjct: 130 DEWTKNAKALKQRLNDEGFNLNLIGRARKMKIVLDRDYVIEKLDVNGQPYVYQQVENSFT 189 Query: 189 QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248 QPN + MLEW + T QGDLLELYCGNGNFSL LA++F+RVLA E+AKPSVE+A+ Sbjct: 190 QPNGKVAEKMLEWAIDCTNESQGDLLELYCGNGNFSLALAQNFNRVLATELAKPSVESAQ 249 Query: 249 YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGLDD 306 YNIAAN+++NV+I+R+S++EFTQA+ +REF RLKD +D+ SY TIFVDPPRSG+D Sbjct: 250 YNIAANNIDNVQILRLSAEEFTQAIEGKREFRRLKDAGVDLKSYNCNTIFVDPPRSGMDI 309 Query: 307 ATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362 T MVQ Y ILYISCNP++L +L +LS TH I R ALFDQFPYT HME G+LL Sbjct: 310 DTCKMVQGYERILYISCNPETLKDNLDVLSETHNITRFALFDQFPYTHHMEAGILL 365 >gi|261210143|ref|ZP_05924440.1| tRNA (uracil-5-)-methyltransferase [Vibrio sp. RC341] gi|260840683|gb|EEX67232.1| tRNA (uracil-5-)-methyltransferase [Vibrio sp. RC341] Length = 369 Score = 431 bits (1107), Expect = e-118, Method: Compositional matrix adjust. Identities = 202/358 (56%), Positives = 266/358 (74%), Gaps = 2/358 (0%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69 Y+ QLA+K+ RL+ M + + +P L++F S +YRMRAEF IWH+GDD+Y+IMF+Q+T+E Sbjct: 11 YQAQLADKIARLKAMFVDYSMPELEVFESPVANYRMRAEFRIWHEGDDMYYIMFNQETRE 70 Query: 70 RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDD 129 + R+D F S LIN LM +M ++ P+LR KLFQ+D+L++ S + +V+L+YHR L + Sbjct: 71 KYRVDQFPAASRLINDLMPLLMDAMKGSPILRHKLFQVDFLSTLSGEILVSLLYHRQLSE 130 Query: 130 AWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQ 189 W A L+ L+ + + LIGRA K K+ LDRDYV E+L V G+ IY+Q+ENSFTQ Sbjct: 131 EWITAAQALKQRLNDEGFNLNLIGRARKMKVVLDRDYVVEKLQVNGQPYIYKQVENSFTQ 190 Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249 PNA + MLEW + T+ GDLLELYCGNGNFSL LA++F+RVLA E+AKPSVEAA++ Sbjct: 191 PNAKVAEKMLEWAVDCTQESNGDLLELYCGNGNFSLALAQNFERVLATELAKPSVEAAQF 250 Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGLDDA 307 NIAAN ++NV+I+RMS++EFTQAM +REFNRLKD + + SYR TIFVDPPRSG+D Sbjct: 251 NIAANQIDNVQIIRMSAEEFTQAMEGKREFNRLKDAGVVLQSYRCNTIFVDPPRSGMDID 310 Query: 308 TVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 T MVQ Y ILYISCNP +L +L +L TH + R ALFDQFPYT HME GV+L RK Sbjct: 311 TCKMVQGYERILYISCNPKTLQENLQVLGETHQVVRFALFDQFPYTHHMEAGVMLERK 368 >gi|153831375|ref|ZP_01984042.1| tRNA (uracil-5-)-methyltransferase [Vibrio cholerae 623-39] gi|148873143|gb|EDL71278.1| tRNA (uracil-5-)-methyltransferase [Vibrio cholerae 623-39] Length = 355 Score = 430 bits (1106), Expect = e-118, Method: Compositional matrix adjust. Identities = 200/354 (56%), Positives = 265/354 (74%), Gaps = 2/354 (0%) Query: 14 LAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRI 73 LA+K+ RL+ M + + +P L++F S +YRMRAEF IWH+GDD+Y+IMF+Q+T+E+ R+ Sbjct: 1 LADKIARLKAMFVDYSMPELEVFESPVANYRMRAEFRIWHEGDDMYYIMFNQETREKYRV 60 Query: 74 DYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRE 133 D F S LIN LM +M ++ P+LR KLFQ+D+L++ S + +V+L+YHR L + W Sbjct: 61 DQFPAASRLINDLMPLLMDAMKGSPILRHKLFQVDFLSTLSGEILVSLLYHRQLSEEWIT 120 Query: 134 CAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAG 193 A L+ L+ + + LIGRA K K+ LDRDYV E+L V G+ +Y+Q+ENSFTQPNA Sbjct: 121 AAQALKQRLNDEGFNLNLIGRARKMKVVLDRDYVVEKLQVNGQPYVYKQVENSFTQPNAK 180 Query: 194 INVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAA 253 + MLEW + T+ +GDLLELYCGNGNFSL LA++F+RVLA E+AKPSVEAA++NIAA Sbjct: 181 VAEKMLEWAVDCTQESKGDLLELYCGNGNFSLALAQNFERVLATELAKPSVEAAQFNIAA 240 Query: 254 NHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGLDDATVGM 311 N + NV+I+RMS++EFTQAM +REFNRLKD +D+ SYR TIFVDPPRSG+D T M Sbjct: 241 NQIGNVQIIRMSAEEFTQAMEGKREFNRLKDAGVDLQSYRCNTIFVDPPRSGMDIDTCKM 300 Query: 312 VQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 VQ Y ILYISCNP++L +L +L TH + R ALFDQFPYT HME GV+L RK Sbjct: 301 VQGYERILYISCNPETLKENLQVLGETHQVVRFALFDQFPYTHHMEAGVMLERK 354 >gi|145632206|ref|ZP_01787941.1| tRNA (uracil-5-)-methyltransferase [Haemophilus influenzae 3655] gi|145634738|ref|ZP_01790446.1| tRNA (uracil-5-)-methyltransferase [Haemophilus influenzae PittAA] gi|144987113|gb|EDJ93643.1| tRNA (uracil-5-)-methyltransferase [Haemophilus influenzae 3655] gi|145267904|gb|EDK07900.1| tRNA (uracil-5-)-methyltransferase [Haemophilus influenzae PittAA] Length = 363 Score = 430 bits (1105), Expect = e-118, Method: Compositional matrix adjust. Identities = 202/361 (55%), Positives = 263/361 (72%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L I QY + L +K+++L ++ F P++Q+F S HYRMRAEF IWH+ D YHIMFD Sbjct: 3 LPISQYNELLQKKLEKLTALLHPFNAPDIQVFDSPTSHYRMRAEFRIWHEQSDFYHIMFD 62 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 Q T +R R+D F S LIN +M ++ ++ + +L KLFQIDYL++ S++ IV+L+YH Sbjct: 63 QATLQRYRVDEFPIASTLINRMMQILLPLLKQQEVLHKKLFQIDYLSTLSNKIIVSLLYH 122 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + L + W A L+D L + + +Q+IGRA+K KIC ++DYVDE L V GR +YRQ+E Sbjct: 123 KTLTEEWESAAKNLKDLLEKQDFDVQIIGRASKQKICFEQDYVDEVLPVNGRNYVYRQVE 182 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N MLEW + T+ +GDLLELYCGNGNFS+ LA++F +VLA EIAKPSV Sbjct: 183 NSFTQPNATVNCKMLEWAIDCTQNSEGDLLELYCGNGNFSIALAQNFRKVLATEIAKPSV 242 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA++NIA N V+N++I+RMS++EFTQAM R FNRLK ID+ SY TIFVDPPR+GL Sbjct: 243 AAAQFNIAENKVDNLQIIRMSAEEFTQAMNGVRAFNRLKGIDLKSYECNTIFVDPPRAGL 302 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D TV +VQ Y ILYISCNP + C +L LS TH IE+ ALFDQFPYT HME GV L+R Sbjct: 303 DPDTVKLVQNYDRILYISCNPHTQCDNLVELSKTHRIEKAALFDQFPYTDHMESGVWLIR 362 Query: 365 K 365 K Sbjct: 363 K 363 >gi|262273152|ref|ZP_06050968.1| tRNA (Uracil54-C5-)-methyltransferase [Grimontia hollisae CIP 101886] gi|262222730|gb|EEY74039.1| tRNA (Uracil54-C5-)-methyltransferase [Grimontia hollisae CIP 101886] Length = 368 Score = 429 bits (1104), Expect = e-118, Method: Compositional matrix adjust. Identities = 207/368 (56%), Positives = 269/368 (73%), Gaps = 3/368 (0%) Query: 1 MSGTLL-IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLY 59 MS TL+ QY+ QL EK+ R++ AF P L++F S HYRMRAEF +WH+GDDLY Sbjct: 1 MSNTLIDTTQYQAQLDEKIARMQSAFEAFNAPELEVFPSPDKHYRMRAEFRVWHEGDDLY 60 Query: 60 HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119 +IMF+Q+TK++ R+D F S +IN LM ++ I+ LR KLFQ+D+L++ S + +V Sbjct: 61 YIMFNQETKQKYRVDQFPQASRIINDLMPLLLDAIKPVESLRRKLFQVDFLSTLSGEVLV 120 Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179 +++YHR LD+ W A L+ L+ + + LIGRA K KI +DRDYV E+L+V RTL Sbjct: 121 SMLYHRQLDEEWEANARMLKQRLNDEGFNLNLIGRARKQKIVIDRDYVVEKLSVNDRTLT 180 Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEI 239 Y+Q+ENSFTQPN + MLEW + T+ GDLLELYCGNGNFSL LA +FDRVLA E+ Sbjct: 181 YQQVENSFTQPNGKVAEKMLEWAIDCTQDSTGDLLELYCGNGNFSLALAENFDRVLATEL 240 Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFV 297 AKPSVE+A++NIAAN+++NV+I+RMS++EFT+AM +REF RL+ ID+ SY TIFV Sbjct: 241 AKPSVESAQWNIAANNIDNVQIIRMSAEEFTEAMEGKREFRRLQQAGIDLKSYHCNTIFV 300 Query: 298 DPPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHME 357 DPPRSG+D+ T MVQ Y ILYISCNP++L +L ILS TH I R ALFDQFPYT HME Sbjct: 301 DPPRSGMDEGTCRMVQGYDRILYISCNPETLKENLEILSETHRITRFALFDQFPYTHHME 360 Query: 358 CGVLLVRK 365 GVLL RK Sbjct: 361 AGVLLERK 368 >gi|261249984|ref|ZP_05942561.1| tRNA (Uracil54-C5-)-methyltransferase [Vibrio orientalis CIP 102891] gi|260939488|gb|EEX95473.1| tRNA (Uracil54-C5-)-methyltransferase [Vibrio orientalis CIP 102891] Length = 369 Score = 429 bits (1103), Expect = e-118, Method: Compositional matrix adjust. Identities = 201/358 (56%), Positives = 267/358 (74%), Gaps = 2/358 (0%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69 Y++QLA+KVDRL +M ++ VP L++F S HYRMRAEF +WH+G+DLY+IMF+Q+T+E Sbjct: 11 YQEQLADKVDRLNEMFASYNVPELEVFESPEQHYRMRAEFRVWHEGEDLYYIMFNQETRE 70 Query: 70 RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDD 129 + R+D F S LIN LM ++ ++ LR KLFQ+D+L++ S + +V+L+YHR LDD Sbjct: 71 KYRVDQFPAASRLINDLMPLLVDAMKDNDSLRRKLFQVDFLSTLSGEILVSLLYHRQLDD 130 Query: 130 AWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQ 189 W + A L+ L+ + + +IGRA K KI LDRDYV E+L V G+ IY+Q+ENSFTQ Sbjct: 131 EWTQNAKALKQRLNDEGFNLNIIGRARKMKIVLDRDYVIEKLDVNGKPYIYQQVENSFTQ 190 Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249 PN + MLEW + T+ GDLLELYCGNGNFSL LA++FDRVLA E+AKPSV +A+Y Sbjct: 191 PNGKVAEKMLEWAVDCTQESTGDLLELYCGNGNFSLALAQNFDRVLATELAKPSVVSAQY 250 Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGLDDA 307 NIAAN ++NV+I+R+S++EFT+A+ +REF RLKD +D+HSY TIFVDPPRSG+D Sbjct: 251 NIAANKIDNVQILRLSAEEFTEAIEGKREFRRLKDAGVDLHSYNCNTIFVDPPRSGMDID 310 Query: 308 TVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 T MVQ Y I+YISCNP++L +L +L TH + R ALFDQFPYT HME GVLL RK Sbjct: 311 TCKMVQGYERIMYISCNPETLKENLDVLCETHNVTRFALFDQFPYTHHMEAGVLLERK 368 >gi|258626050|ref|ZP_05720905.1| tRNA (uracil-5-)-methyltransferase [Vibrio mimicus VM603] gi|258581670|gb|EEW06564.1| tRNA (uracil-5-)-methyltransferase [Vibrio mimicus VM603] Length = 369 Score = 429 bits (1103), Expect = e-118, Method: Compositional matrix adjust. Identities = 200/355 (56%), Positives = 266/355 (74%), Gaps = 2/355 (0%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69 Y+ QLA+K+ RL+ M + + +P L++F S +YRMRAEF IWH+GDD+Y+IMF+Q+T+E Sbjct: 11 YQAQLADKIARLKAMFVNYSMPELEVFESPVANYRMRAEFRIWHEGDDMYYIMFNQETRE 70 Query: 70 RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDD 129 + R+D F S LIN LM +M ++ +LR KLFQ+D+L++ S + +V+L+YHR L++ Sbjct: 71 KYRVDQFPAASRLINDLMPLLMDAMKGSHILRHKLFQVDFLSTLSGEVLVSLLYHRQLNE 130 Query: 130 AWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQ 189 W A L+ L+ + + LIGRA K K+ LDRDYV E+L V G+ +Y+Q+ENSFTQ Sbjct: 131 EWITAAQALKQRLNDEGFNLNLIGRARKMKVVLDRDYVVEKLQVNGQPYVYKQVENSFTQ 190 Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249 PNA + MLEW + T+ GDLLELYCGNGNFSL LA++FDRVLA E+AKPSVEAA++ Sbjct: 191 PNAKVAEKMLEWAVDCTQDSNGDLLELYCGNGNFSLALAQNFDRVLATELAKPSVEAAQF 250 Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGLDDA 307 NIAAN ++NV+I+RMS++EFTQAM +REFNRLKD +++ SYR TIFVDPPRSG+D Sbjct: 251 NIAANQIDNVQIIRMSAEEFTQAMEGKREFNRLKDAGVNLQSYRCNTIFVDPPRSGMDID 310 Query: 308 TVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362 T MVQ Y ILYISCNP++L +L +L TH + R ALFDQFPYT HME GVLL Sbjct: 311 TCKMVQGYERILYISCNPETLQENLQVLGETHQVVRFALFDQFPYTHHMEAGVLL 365 >gi|239994745|ref|ZP_04715269.1| tRNA (uracil-5-)-methyltransferase [Alteromonas macleodii ATCC 27126] Length = 365 Score = 428 bits (1101), Expect = e-118, Method: Compositional matrix adjust. Identities = 192/357 (53%), Positives = 264/357 (73%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTK 68 +Y+ QL EKV+RL ++ F P+L +F S+P HYRMRAEF +WH+GDDL+HIMF+Q+TK Sbjct: 8 RYQAQLDEKVERLTALLSPFNAPDLTVFPSQPTHYRMRAEFRVWHEGDDLFHIMFNQETK 67 Query: 69 ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLD 128 E+ R+D F P IN M ++ +R LR KLFQIDYL++ S + +++L+YHR LD Sbjct: 68 EKYRVDSFPPACKAINDAMALLLKEVRPNEALRKKLFQIDYLSALSGELVISLLYHRQLD 127 Query: 129 DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFT 188 + W+E A L+ L A ++ +IGRA K K+ +D D+V ERL V G+ I++ IENSFT Sbjct: 128 EKWQEAAKELKAKLEAHFPKVNIIGRARKQKLIIDNDFVIERLPVNGKEFIFKHIENSFT 187 Query: 189 QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248 QPNA +N M+EW L K + GDLLE+YCG GNFSL LA HFD V+ EIAKPSV+AA+ Sbjct: 188 QPNAEVNCSMIEWALDCVKPLSGDLLEMYCGAGNFSLPLALHFDNVVGTEIAKPSVQAAQ 247 Query: 249 YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDAT 308 +NI N +NNVKIVR++++EFTQAM+ ER F+RL+ ID+ +Y F T+ VDPPR+GLD+ + Sbjct: 248 FNIEQNQLNNVKIVRLAAEEFTQAMKGERTFSRLEGIDLSAYNFTTVLVDPPRAGLDEDS 307 Query: 309 VGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 + M+Q Y +I+YISCNP++L ++L +LS TH + + ALFDQFP+T H+E GVLL RK Sbjct: 308 LRMIQDYDNIVYISCNPETLAQNLELLSETHDVAQSALFDQFPFTHHIEAGVLLTRK 364 >gi|153835643|ref|ZP_01988310.1| tRNA (uracil-5-)-methyltransferase [Vibrio harveyi HY01] gi|148867739|gb|EDL66997.1| tRNA (uracil-5-)-methyltransferase [Vibrio harveyi HY01] Length = 369 Score = 427 bits (1097), Expect = e-117, Method: Compositional matrix adjust. Identities = 202/359 (56%), Positives = 266/359 (74%), Gaps = 2/359 (0%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTK 68 +Y++QLAEKV+RL M + VP L++F S HYRMRAEF +WH+G+DLY+IMF+Q+T+ Sbjct: 10 RYQEQLAEKVERLNDMFAPYNVPELEVFESPEQHYRMRAEFRVWHEGEDLYYIMFNQETR 69 Query: 69 ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLD 128 E+ R+D F S LIN LM ++ ++ LR KLFQ+D+L++ S + +V+L+YHR LD Sbjct: 70 EKYRVDQFPAASRLINDLMPLLVEAMKDNESLRRKLFQVDFLSTLSGEILVSLLYHRQLD 129 Query: 129 DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFT 188 + W E A L+ L+ + + +IGRA K KI LDRDYV E+L V G++ IY+Q+ENSFT Sbjct: 130 EEWIENAKALKQRLNDEGFNLNIIGRARKMKIVLDRDYVIEKLDVNGQSYIYQQVENSFT 189 Query: 189 QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248 QPN + MLEW + T+ GDLLELYCGNGNFSL LA++FDRVLA E+AKPSV +A+ Sbjct: 190 QPNGKVAEKMLEWAVDCTQESTGDLLELYCGNGNFSLALAQNFDRVLATELAKPSVVSAQ 249 Query: 249 YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGLDD 306 YNIAAN ++NV+I+R+S++EFTQA+ +REF RL+D +D+ SY TIFVDPPRSG+D Sbjct: 250 YNIAANEIDNVQILRLSAEEFTQAIEGKREFRRLQDAGVDLKSYNCNTIFVDPPRSGMDV 309 Query: 307 ATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 T MVQ Y I+YISCNPD+L +L IL TH + R ALFDQFPYT HME GVLL RK Sbjct: 310 DTCKMVQGYERIMYISCNPDTLKENLDILCETHNVTRFALFDQFPYTHHMEAGVLLERK 368 >gi|303250361|ref|ZP_07336560.1| tRNA (uracil-5-)-methyltransferase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307253670|ref|ZP_07535537.1| tRNA (uracil-5-)-methyltransferase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|302650831|gb|EFL80988.1| tRNA (uracil-5-)-methyltransferase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306858906|gb|EFM90952.1| tRNA (uracil-5-)-methyltransferase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 368 Score = 427 bits (1097), Expect = e-117, Method: Compositional matrix adjust. Identities = 205/367 (55%), Positives = 265/367 (72%), Gaps = 5/367 (1%) Query: 4 TLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDD-----L 58 L I+QY LAEK L ++ F P L++F SE H+RMRAEF +WHD ++ L Sbjct: 2 NLPIEQYADLLAEKAKNLTALLAPFNPPELEVFESETSHFRMRAEFRVWHDTNEVGENEL 61 Query: 59 YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAI 118 YHIMFDQ+TK+R R+D F + LIN +M ++A I+ LL KLFQ+DYL++ S + Sbjct: 62 YHIMFDQETKQRYRVDQFPIANHLINKMMSSLLAEIKGNELLTRKLFQVDYLSTLSGEIA 121 Query: 119 VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTL 178 V+++YH+ L++ W+ A L+ L + +++QLIGRA K KI LDRDYV+E L V GR L Sbjct: 122 VSMLYHKKLNEEWQTEAAALKVRLEHQGFKVQLIGRATKQKIALDRDYVEEVLPVDGRNL 181 Query: 179 IYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVE 238 IYRQ+ENSFTQPNA +N+ MLEW + TK GDLLELYCGNGNFS+ LA +F +VLA E Sbjct: 182 IYRQVENSFTQPNAKMNIKMLEWARSCTKNSTGDLLELYCGNGNFSIALAENFRQVLATE 241 Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298 I+K SV++A+YNI N ++N++I+RMS++EFTQAM REFNRLK ID+ +Y TIFVD Sbjct: 242 ISKSSVQSAQYNIEQNGIDNLQIIRMSAEEFTQAMSGVREFNRLKGIDLKAYDCNTIFVD 301 Query: 299 PPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMEC 358 PPR+GLD T+ MVQAY ILYISCNP +L +L LS TH IER ALFDQFPYT H+E Sbjct: 302 PPRAGLDQDTLNMVQAYERILYISCNPHTLAENLQQLSQTHRIERAALFDQFPYTHHVES 361 Query: 359 GVLLVRK 365 GV L+RK Sbjct: 362 GVWLIRK 368 >gi|323495308|ref|ZP_08100388.1| tRNA (uracil-5-)-methyltransferase [Vibrio brasiliensis LMG 20546] gi|323310443|gb|EGA63627.1| tRNA (uracil-5-)-methyltransferase [Vibrio brasiliensis LMG 20546] Length = 369 Score = 427 bits (1097), Expect = e-117, Method: Compositional matrix adjust. Identities = 199/358 (55%), Positives = 268/358 (74%), Gaps = 2/358 (0%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTK 68 +Y++QLAEKVDRL +M ++ VP L++F S HYRMRAEF +WH+G+DLY+IMF+Q+T+ Sbjct: 10 RYQEQLAEKVDRLNEMFASYNVPELEVFESPEQHYRMRAEFRVWHEGEDLYYIMFNQETR 69 Query: 69 ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLD 128 E+ R+D F S LIN LM ++ ++ LR KLFQ+D+L++ S + +V+L+YHR LD Sbjct: 70 EKYRVDQFPVASRLINDLMPLLIEAMKGSDSLRRKLFQVDFLSTLSGEILVSLLYHRQLD 129 Query: 129 DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFT 188 D W + A L+ L+ + + +IGRA K KI LDRDYV E+L V G+ +Y+Q+ENSFT Sbjct: 130 DEWTQNAKALKQRLNDEGFNLNIIGRARKMKIVLDRDYVIEKLDVNGQPYVYQQVENSFT 189 Query: 189 QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248 QPN + MLEW + T+ GDLLELYCGNGNFSL LA++FDRVLA E+AKPSVE+A+ Sbjct: 190 QPNGKVAEKMLEWAVDCTQESTGDLLELYCGNGNFSLALAQNFDRVLATELAKPSVESAQ 249 Query: 249 YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGLDD 306 YNI AN+++NV+I+R+S++EFTQA+ +REF RLKD +D++SY TIFVDPPR+G+D Sbjct: 250 YNIKANNIDNVQILRLSAEEFTQAIEGKREFRRLKDAGVDLNSYNCNTIFVDPPRAGMDI 309 Query: 307 ATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 T MVQ Y I+YISCNP++L +L IL TH + R ALFDQFP+T HME GVLL R Sbjct: 310 DTCKMVQGYERIMYISCNPETLKENLDILCETHKVTRFALFDQFPFTHHMEAGVLLER 367 >gi|323498754|ref|ZP_08103741.1| tRNA (uracil-5-)-methyltransferase [Vibrio sinaloensis DSM 21326] gi|323316182|gb|EGA69206.1| tRNA (uracil-5-)-methyltransferase [Vibrio sinaloensis DSM 21326] Length = 368 Score = 426 bits (1096), Expect = e-117, Method: Compositional matrix adjust. Identities = 200/359 (55%), Positives = 268/359 (74%), Gaps = 2/359 (0%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTK 68 +Y++QLAEKV+RL +M + VP L++F S HYRMRAEF +WH+G+DLY+IMF+Q+T+ Sbjct: 10 RYQEQLAEKVERLTEMFSPYNVPELEVFESPEQHYRMRAEFRVWHEGEDLYYIMFNQETR 69 Query: 69 ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLD 128 E+ R+D F S LIN LM +M ++ LR KLFQ+D+L++ S + +V+L+YHR LD Sbjct: 70 EKYRVDQFPTASRLINDLMPLLMDAMKDNDSLRRKLFQVDFLSTLSGEILVSLLYHRQLD 129 Query: 129 DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFT 188 D W + A L+ L+ + + +IGRA K KI LDRDYV E+L V G++ +Y+Q+ENSFT Sbjct: 130 DEWTQNAKALKQRLNDEGFNLNIIGRARKMKIVLDRDYVIEKLDVNGQSYVYQQVENSFT 189 Query: 189 QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248 QPN + MLEW + T+ GDLLELYCGNGNFSL LA++FDRVLA E+AKPSV +A+ Sbjct: 190 QPNGKVAEKMLEWAVDCTQDSSGDLLELYCGNGNFSLALAQNFDRVLATELAKPSVVSAQ 249 Query: 249 YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGLDD 306 YNIAAN ++NV+I+R+S++EFTQA+ +REF RL+D +D+ SY TIFVDPPR+G+D Sbjct: 250 YNIAANKIDNVQILRLSAEEFTQAIEGKREFRRLQDAGVDLKSYNCNTIFVDPPRAGMDV 309 Query: 307 ATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 T MVQ Y I+YISCNP++L +L ILS TH + R ALFDQFP+T HME GVLL RK Sbjct: 310 DTCKMVQGYERIMYISCNPETLKDNLDILSETHKVTRFALFDQFPFTHHMEAGVLLERK 368 >gi|90407368|ref|ZP_01215553.1| tRNA (uracil-5-)-methyltransferase [Psychromonas sp. CNPT3] gi|90311519|gb|EAS39619.1| tRNA (uracil-5-)-methyltransferase [Psychromonas sp. CNPT3] Length = 365 Score = 426 bits (1096), Expect = e-117, Method: Compositional matrix adjust. Identities = 192/358 (53%), Positives = 270/358 (75%), Gaps = 1/358 (0%) Query: 8 DQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQT 67 D Y+ QL K + + F +P+L+IF S +HYRMR+EF +WH+GDDLY+IMFD++T Sbjct: 9 DNYDMQLNAKKTLFNEQFVDFNLPDLEIFASPKLHYRMRSEFRVWHEGDDLYYIMFDKET 68 Query: 68 KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLL 127 K+++R+D F P S LINALM +++ I++ LR KLFQID+L++ S Q +V+L+YH+ L Sbjct: 69 KQKIRVDQFPPASELINALMPQLINLIKVSKTLRFKLFQIDFLSTLSGQILVSLLYHKQL 128 Query: 128 DDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSF 187 D+ W E L+ L ++++ I +GRA K K+ LD+D+V E L V G+TLIY+Q+ENSF Sbjct: 129 DEQWVEELNALKATL-SKQFDINFMGRAKKQKLILDKDHVIESLEVDGKTLIYQQVENSF 187 Query: 188 TQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA 247 TQPN +++ MLEW + T+ +GDLLELYCGNGNFS+ LA++F++VLA EIAKPSV +A Sbjct: 188 TQPNTEVSIKMLEWAIDCTRNSEGDLLELYCGNGNFSIALAKNFNKVLATEIAKPSVHSA 247 Query: 248 RYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307 +YNIAANH++N+ I+RMS++EFTQA+ + R F+RL+ I++ Y+ TIFVDPPR+GLDD Sbjct: 248 QYNIAANHIDNLTIIRMSAEEFTQALNKVRVFHRLEGINLDDYQCNTIFVDPPRAGLDDE 307 Query: 308 TVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 T+ MVQ Y +ILYISCNP++L +L TH +ER ALFDQFPYT H E GV L+++ Sbjct: 308 TIKMVQTYDNILYISCNPETLKSNLQQFDATHKVERFALFDQFPYTHHTEAGVYLIKR 365 >gi|156972610|ref|YP_001443517.1| tRNA (uracil-5-)-methyltransferase [Vibrio harveyi ATCC BAA-1116] gi|166988122|sp|A7MXY6|TRMA_VIBHB RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|156524204|gb|ABU69290.1| hypothetical protein VIBHAR_00262 [Vibrio harveyi ATCC BAA-1116] Length = 369 Score = 425 bits (1093), Expect = e-117, Method: Compositional matrix adjust. Identities = 201/359 (55%), Positives = 266/359 (74%), Gaps = 2/359 (0%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTK 68 +Y++QLAEKV+RL M + VP L++F S HYRMRAEF +WH+G+DLY+IMF+Q+T+ Sbjct: 10 RYQEQLAEKVERLNDMFAPYNVPELEVFESPEQHYRMRAEFRVWHEGEDLYYIMFNQETR 69 Query: 69 ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLD 128 E+ R+D F S LIN LM ++ ++ LR KLFQ+D+L++ S + +V+L+YHR LD Sbjct: 70 EKYRVDQFPAASRLINDLMPLLVEAMKDNESLRRKLFQVDFLSTLSGEILVSLLYHRQLD 129 Query: 129 DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFT 188 + W E A L+ L+ + + +IGRA K KI LDRDYV E+L V G++ IY+Q+ENSFT Sbjct: 130 EEWIENAKALKQRLNDEGFNLNIIGRARKMKIVLDRDYVIEKLDVNGQSYIYQQVENSFT 189 Query: 189 QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248 QPN + MLEW + T+ GDLLELYCGNGNFSL LA++FDRVLA E+AKPSV +A+ Sbjct: 190 QPNGKVAEKMLEWAVDCTQESTGDLLELYCGNGNFSLALAQNFDRVLATELAKPSVVSAQ 249 Query: 249 YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGLDD 306 YNIAAN ++NV+I+R+S++EFTQA+ +REF RL+D +D+ SY TIFVDPPRSG+D Sbjct: 250 YNIAANEIDNVQILRLSAEEFTQAIEGKREFRRLQDAGVDLKSYNCNTIFVDPPRSGMDV 309 Query: 307 ATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 T MVQ Y I+YISCNP++L +L IL TH + R ALFDQFPYT HME GVLL RK Sbjct: 310 DTCKMVQGYERIMYISCNPETLKENLDILCETHNVTRFALFDQFPYTHHMEAGVLLERK 368 >gi|127511072|ref|YP_001092269.1| tRNA (uracil-5-)-methyltransferase [Shewanella loihica PV-4] gi|171855240|sp|A3Q962|TRMA_SHELP RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|126636367|gb|ABO22010.1| tRNA (uracil-5-)-methyltransferase [Shewanella loihica PV-4] Length = 365 Score = 425 bits (1093), Expect = e-117, Method: Compositional matrix adjust. Identities = 191/357 (53%), Positives = 269/357 (75%), Gaps = 1/357 (0%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTK 68 QY+ QL K +L Q+ + F+ P L++F S+ HYRMRAEF +WH+G+DLY+ MFD+ Sbjct: 10 QYDAQLDVKRQKLAQLFVDFETPELEVFASQKAHYRMRAEFRVWHEGEDLYYYMFDKAQN 69 Query: 69 ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLD 128 +++R + F+P S LIN +M E+MA +R P+LR KLFQ+D+L++ S + +V+L+YH+ LD Sbjct: 70 QKIRCEQFLPASQLINDMMPELMAALRPNPVLRHKLFQVDFLSTLSGEILVSLLYHKQLD 129 Query: 129 DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFT 188 W+E A L++AL + K+++ +IGRA K K+ +DRD+V E L V G+ L Y+Q+ENSFT Sbjct: 130 AQWQEEAQALKEALSS-KFKVDIIGRARKQKLVMDRDFVIESLPVNGKQLTYKQVENSFT 188 Query: 189 QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248 QPN + + MLEW + T+ GDLLELYCGNGNFS+ LA++F+RVLA E+AKPSV++A+ Sbjct: 189 QPNGEVAIKMLEWAIDITRDSSGDLLELYCGNGNFSIALAQNFNRVLATELAKPSVDSAQ 248 Query: 249 YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDAT 308 YNI AN ++N++I+RMS+++FT A+ ++R F RL+ +D+ SY TIFVDPPR+GLDD T Sbjct: 249 YNIEANQIDNLQIIRMSAEDFTDALAKKRSFRRLEGVDLDSYDCNTIFVDPPRAGLDDNT 308 Query: 309 VGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 + MVQ Y ILYISCNP++L +L +L TH I R ALFDQFPYT HME GVLL R+ Sbjct: 309 LSMVQGYERILYISCNPNTLLDNLKVLDKTHKITRFALFDQFPYTDHMESGVLLERR 365 >gi|269961495|ref|ZP_06175858.1| tRNA (uracil-5-)-methyltransferase [Vibrio harveyi 1DA3] gi|269833724|gb|EEZ87820.1| tRNA (uracil-5-)-methyltransferase [Vibrio harveyi 1DA3] Length = 369 Score = 425 bits (1092), Expect = e-117, Method: Compositional matrix adjust. Identities = 201/359 (55%), Positives = 266/359 (74%), Gaps = 2/359 (0%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTK 68 +Y++QLAEKV+RL M + VP L++F S HYRMRAEF +WH+G+DLY+IMF+Q+T+ Sbjct: 10 RYQEQLAEKVERLTDMFAPYNVPELEVFESPEQHYRMRAEFRVWHEGEDLYYIMFNQETR 69 Query: 69 ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLD 128 E+ R+D F S LIN LM ++ ++ LR KLFQ+D+L++ S + +V+L+YHR LD Sbjct: 70 EKYRVDQFPAASRLINDLMPLLVEAMKDNESLRRKLFQVDFLSTLSGEILVSLLYHRQLD 129 Query: 129 DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFT 188 + W E A L+ L+ + + +IGRA K KI LDRDYV E+L V G++ IY+Q+ENSFT Sbjct: 130 EEWIENAKALKQRLNDEGFNLNIIGRARKMKIVLDRDYVIEKLDVNGQSYIYQQVENSFT 189 Query: 189 QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248 QPN + MLEW + T+ GDLLELYCGNGNFSL LA++FDRVLA E+AKPSV +A+ Sbjct: 190 QPNGKVAEKMLEWAVDCTQESTGDLLELYCGNGNFSLALAQNFDRVLATELAKPSVVSAQ 249 Query: 249 YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGLDD 306 YNIAAN ++NV+I+R+S++EFTQA+ +REF RL+D +D+ SY TIFVDPPRSG+D Sbjct: 250 YNIAANEIDNVQILRLSAEEFTQAIEGKREFRRLQDAGVDLKSYNCNTIFVDPPRSGMDV 309 Query: 307 ATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 T MVQ Y I+YISCNP++L +L IL TH + R ALFDQFPYT HME GVLL RK Sbjct: 310 DTCKMVQGYERIMYISCNPETLKENLDILCETHNVTRFALFDQFPYTHHMEAGVLLERK 368 >gi|88861402|ref|ZP_01136031.1| tRNA (Uracil-5-)-methyltransferase (tRNA(M-5-U54)-methyltransferase) (RUMT) [Pseudoalteromonas tunicata D2] gi|88816577|gb|EAR26403.1| tRNA (Uracil-5-)-methyltransferase (tRNA(M-5-U54)-methyltransferase) (RUMT) [Pseudoalteromonas tunicata D2] Length = 365 Score = 424 bits (1091), Expect = e-117, Method: Compositional matrix adjust. Identities = 194/356 (54%), Positives = 264/356 (74%), Gaps = 1/356 (0%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69 YEQQL EK + F V +L++F SE HYR RAEF +WHDG+DL+HIMFDQQ+KE Sbjct: 11 YEQQLNEKKHTIAAQFARFGVNDLEVFASEEKHYRQRAEFRVWHDGEDLFHIMFDQQSKE 70 Query: 70 RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDD 129 ++R++ F P + LI ALM ++A ++ + +LR KLFQIDYL++ S + +V+++YH+ LDD Sbjct: 71 KIRVEQFDPAAPLIFALMPRLIAELKTKEVLRRKLFQIDYLSTLSGEILVSMLYHKALDD 130 Query: 130 AWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQ 189 W L++ L ++ I IGRA K KI L ++YV E+LTVAG+ L+Y+Q+ENSFTQ Sbjct: 131 EWLTAIKELKNKLSG-EFNIDFIGRARKQKIALGKEYVVEKLTVAGKQLVYQQVENSFTQ 189 Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249 PNA +N MLEW L ++ + DLLELYCGNGNFS+ LA F+RVLA EI+K SV +A++ Sbjct: 190 PNAKVNQKMLEWALDISQNLSNDLLELYCGNGNFSIALAPAFNRVLATEISKSSVASAQF 249 Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309 NIA N + N+ I+RMSS+EFT+AM+ E+EF+RLK ID+ SY ++I VDPPR+GLD+ T Sbjct: 250 NIAENKITNLDIIRMSSEEFTEAMKGEKEFSRLKGIDLKSYNCQSILVDPPRAGLDEGTT 309 Query: 310 GMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 +VQ Y +I+YISCNP +L RDL +L+ TH +ER A+FDQFPYT H+E GV L RK Sbjct: 310 RLVQNYDNIIYISCNPQTLERDLEVLTQTHKVERFAIFDQFPYTHHIESGVFLTRK 365 >gi|89074503|ref|ZP_01160980.1| tRNA (uracil-5-)-methyltransferase [Photobacterium sp. SKA34] gi|89049791|gb|EAR55341.1| tRNA (uracil-5-)-methyltransferase [Photobacterium sp. SKA34] Length = 368 Score = 424 bits (1091), Expect = e-116, Method: Compositional matrix adjust. Identities = 202/368 (54%), Positives = 271/368 (73%), Gaps = 3/368 (0%) Query: 1 MSGTLL-IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLY 59 M+ T+L Y+QQL EK +R++ + F P L++F S HYRMRAEF +WH+G+DL+ Sbjct: 1 MTSTILNTADYQQQLDEKTERIQNICADFDTPELEVFASPAEHYRMRAEFRVWHEGEDLF 60 Query: 60 HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119 +IMF+Q+T+E+ R+D F S LIN LM ++ I+ LR KLFQ+D+L++ S + +V Sbjct: 61 YIMFNQETREKYRVDQFPAASRLINDLMPMLVDAIKPIKALRHKLFQVDFLSTLSGEILV 120 Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179 +++YHR LDD W A +L+ L+ +++ LIGRA K KI LD+DYV E+L V RTL Sbjct: 121 SMLYHRQLDDEWTAEAKQLKQRLNDEGFKLNLIGRARKMKIVLDQDYVIEQLKVHDRTLT 180 Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEI 239 Y+Q+ENSFTQPN + MLEW + T+ +GDLLELYCGNGNFSL LA++F+RVLA E+ Sbjct: 181 YKQVENSFTQPNGEVAQKMLEWAVDCTQDSKGDLLELYCGNGNFSLALAQNFERVLATEL 240 Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFV 297 AKPSV++A+YNIA N+++NV+I+RMS+++FT AM +REF RLKD +D+ SY TIFV Sbjct: 241 AKPSVDSAQYNIAVNNIDNVQIIRMSAEDFTDAMEGKREFRRLKDQNVDLQSYNCNTIFV 300 Query: 298 DPPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHME 357 DPPRSG+D+ T MVQ Y I+YISCNP++L +L IL TH I R ALFDQFPYT HME Sbjct: 301 DPPRSGMDEGTCRMVQGYERIMYISCNPETLKENLDILCQTHKITRFALFDQFPYTHHME 360 Query: 358 CGVLLVRK 365 GVLLVRK Sbjct: 361 AGVLLVRK 368 >gi|307246918|ref|ZP_07528983.1| tRNA (uracil-5-)-methyltransferase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307255900|ref|ZP_07537701.1| tRNA (uracil-5-)-methyltransferase [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307260353|ref|ZP_07542060.1| tRNA (uracil-5-)-methyltransferase [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306852203|gb|EFM84443.1| tRNA (uracil-5-)-methyltransferase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306861168|gb|EFM93161.1| tRNA (uracil-5-)-methyltransferase [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306865604|gb|EFM97485.1| tRNA (uracil-5-)-methyltransferase [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 368 Score = 424 bits (1089), Expect = e-116, Method: Compositional matrix adjust. Identities = 202/367 (55%), Positives = 266/367 (72%), Gaps = 5/367 (1%) Query: 4 TLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDD-----L 58 L I+QY LAEK L +++ F P L++F SE H+RMRAEF +WHD ++ L Sbjct: 2 NLPIEQYADLLAEKAKNLTALLVPFNPPELEVFESETSHFRMRAEFRVWHDTNEVGENEL 61 Query: 59 YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAI 118 YHIMFDQ+TK+R R++ F + LIN +M ++A I+ LL KLFQ+DYL++ S + Sbjct: 62 YHIMFDQETKQRYRVEQFPIANHLINKMMSSLLAEIKGNELLTRKLFQVDYLSTLSGEIA 121 Query: 119 VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTL 178 V+++YH+ L++ W+ A L+ L + +++Q+IGRA K KI LDRDYV+E L V GR L Sbjct: 122 VSMLYHKKLNEEWQAEAAALKARLEHQGFKVQIIGRATKQKIALDRDYVEEVLPVDGRNL 181 Query: 179 IYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVE 238 IYRQ+ENSFTQPNA +N+ MLEW + T+ GDLLELYCGNGNFS+ LA +F +VLA E Sbjct: 182 IYRQVENSFTQPNAKMNIKMLEWARSCTRHSSGDLLELYCGNGNFSIALAENFRQVLATE 241 Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298 I+K SV++A+YNI N ++N++I+RMS++EFTQAM REFNRLK ID+ +Y TIFVD Sbjct: 242 ISKSSVQSAQYNIEQNGIDNLQIIRMSAEEFTQAMNGVREFNRLKGIDLKAYDCNTIFVD 301 Query: 299 PPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMEC 358 PPR+GLD T+ MVQAY ILYISCNP +L +L LS TH IER ALFDQFPYT H+E Sbjct: 302 PPRAGLDQDTLNMVQAYERILYISCNPHTLAENLQQLSQTHRIERAALFDQFPYTHHVES 361 Query: 359 GVLLVRK 365 GV L+RK Sbjct: 362 GVWLIRK 368 >gi|254509266|ref|ZP_05121360.1| tRNA (uracil-5-)-methyltransferase [Vibrio parahaemolyticus 16] gi|219547820|gb|EED24851.1| tRNA (uracil-5-)-methyltransferase [Vibrio parahaemolyticus 16] Length = 368 Score = 424 bits (1089), Expect = e-116, Method: Compositional matrix adjust. Identities = 198/359 (55%), Positives = 267/359 (74%), Gaps = 2/359 (0%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTK 68 +Y++QLAEKV+RL +M + P L++F S HYRMRAEF +WH+G+DLY+IMF+Q+T+ Sbjct: 10 RYQEQLAEKVERLTEMFAPYNAPELEVFESPEQHYRMRAEFRVWHEGEDLYYIMFNQETR 69 Query: 69 ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLD 128 E+ R+D F S LIN LM ++ ++ LR KLFQ+D+L++ S + +V+L+YHR LD Sbjct: 70 EKYRVDQFPAASRLINDLMPLLVDAMKDNDSLRRKLFQVDFLSTLSGEILVSLLYHRQLD 129 Query: 129 DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFT 188 D W + A L+ L+ + + +IGRA K KI LDRDYV E+L V G+ IY+Q+ENSFT Sbjct: 130 DEWTKNAKALKQRLNDEGFNLNIIGRARKMKIVLDRDYVIEKLDVNGKPYIYQQVENSFT 189 Query: 189 QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248 QPN + MLEW + T+ QGDLLELYCGNGNFSL LA++F+RVLA E+AKPSV +A+ Sbjct: 190 QPNGKVAEKMLEWAVDCTQDSQGDLLELYCGNGNFSLALAQNFERVLATELAKPSVISAQ 249 Query: 249 YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGLDD 306 YNIAAN ++NV+I+R+S++EFT+A+ +REF RLKD +D+ SY TIFVDPPR+G+D Sbjct: 250 YNIAANKIDNVQILRLSAEEFTEAIEGKREFRRLKDAGVDLKSYNCNTIFVDPPRAGMDI 309 Query: 307 ATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 T MVQ Y ILYISCNP++L +L +LS TH + R ALFDQFP+T HME GV+L RK Sbjct: 310 DTCKMVQGYERILYISCNPETLKENLDVLSETHNVTRFALFDQFPFTHHMEAGVMLERK 368 >gi|312884418|ref|ZP_07744123.1| tRNA (uracil-5-)-methyltransferase [Vibrio caribbenthicus ATCC BAA-2122] gi|309367940|gb|EFP95487.1| tRNA (uracil-5-)-methyltransferase [Vibrio caribbenthicus ATCC BAA-2122] Length = 369 Score = 423 bits (1088), Expect = e-116, Method: Compositional matrix adjust. Identities = 198/367 (53%), Positives = 268/367 (73%), Gaps = 4/367 (1%) Query: 3 GTLLID--QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60 TL +D Y++QL++KV L + +F P L++F S HYRMRAEF +WH+GDDLY+ Sbjct: 2 ATLDVDPRHYQKQLSDKVSCLNDLFASFDTPELEVFESPKQHYRMRAEFRVWHEGDDLYY 61 Query: 61 IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVT 120 +MF+QQT+E+ R+D F S LIN LM E++ +++ LR KLFQ+D+L++ S + +V+ Sbjct: 62 VMFNQQTREKYRVDQFPAASQLINDLMPELIDAMKVNDSLRHKLFQVDFLSTLSGEVLVS 121 Query: 121 LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIY 180 L+YHR LDD W E A L+ L + + + +IGRA K K+ LDRDYV E+L V G+ Y Sbjct: 122 LLYHRQLDDEWTENAKALKQQLIDKGFNLNIIGRARKMKVVLDRDYVIEKLDVNGKAYTY 181 Query: 181 RQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240 +Q+ENSFTQPN + MLEW + T+ QGDLLELYCGNGNFSL LA++F+RVLA E+A Sbjct: 182 QQVENSFTQPNGKVAEKMLEWAIDCTQDSQGDLLELYCGNGNFSLALAQNFNRVLATELA 241 Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVD 298 KPSVE+A+YNI N + NV+I+R+S++EFTQA+ +REF RLKD +++ SY TIFVD Sbjct: 242 KPSVESAQYNIQVNQIENVQILRLSAEEFTQAIEGKREFRRLKDAGVELDSYNCNTIFVD 301 Query: 299 PPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMEC 358 PPRSG+D T MVQ Y I+YISCNP++L +LS+LS TH I R ALFDQFPYT HME Sbjct: 302 PPRSGMDIDTCKMVQGYERIIYISCNPETLKDNLSLLSQTHKITRFALFDQFPYTHHMEA 361 Query: 359 GVLLVRK 365 G++L ++ Sbjct: 362 GIVLEKR 368 >gi|114561313|ref|YP_748826.1| tRNA (uracil-5-)-methyltransferase [Shewanella frigidimarina NCIMB 400] gi|122301133|sp|Q089S7|TRMA_SHEFN RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|114332606|gb|ABI69988.1| tRNA (uracil-5-)-methyltransferase [Shewanella frigidimarina NCIMB 400] Length = 365 Score = 423 bits (1088), Expect = e-116, Method: Compositional matrix adjust. Identities = 197/356 (55%), Positives = 266/356 (74%), Gaps = 1/356 (0%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69 Y+ QL +K +L + F P L++F SEP+HYRMRAEF +WH GDDLY+ MFD+ Sbjct: 11 YDAQLQQKRIKLEKAFADFNPPALEVFASEPMHYRMRAEFRMWHQGDDLYYYMFDKALNA 70 Query: 70 RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDD 129 ++R D ++P L+IN +M ++A + P LR +LFQ+D+L++ S + +V+L+YHR LD+ Sbjct: 71 KVRCDQYLPAGLIINQMMAALIAELTPNPALRYRLFQVDFLSTLSGEILVSLLYHRQLDE 130 Query: 130 AWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQ 189 WRE A +L+ L A ++ + +IGRA K KI LD+D+V E LTV + L Y+QIENSFTQ Sbjct: 131 EWREQATQLKAKLSA-QFNVNIIGRARKQKIDLDKDFVVETLTVNEQVLHYKQIENSFTQ 189 Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249 PNA ++V MLEW + ATK QGDLLELYCGNGNF++ LAR+F+RVLA E+AKPSV+AA+Y Sbjct: 190 PNAKVSVKMLEWAIDATKDSQGDLLELYCGNGNFTIALARNFNRVLATELAKPSVDAAQY 249 Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309 NI NHV+NV+I+RMS+++F+ AM ++R+F RL+ ID+ SY TIFVDPPR+G+D T+ Sbjct: 250 NIDINHVDNVQIIRMSAEDFSDAMAKKRQFRRLEGIDLDSYDCNTIFVDPPRAGIDPETL 309 Query: 310 GMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 ++Q Y ILYISCNP++L +L L TH I R ALFDQFPYT HME GVLLVRK Sbjct: 310 KLIQGYERILYISCNPETLNDNLLTLGQTHKITRFALFDQFPYTDHMESGVLLVRK 365 >gi|90581101|ref|ZP_01236901.1| tRNA (uracil-5-)-methyltransferase [Vibrio angustum S14] gi|90437797|gb|EAS62988.1| tRNA (uracil-5-)-methyltransferase [Vibrio angustum S14] Length = 368 Score = 423 bits (1088), Expect = e-116, Method: Compositional matrix adjust. Identities = 201/368 (54%), Positives = 271/368 (73%), Gaps = 3/368 (0%) Query: 1 MSGTLL-IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLY 59 M+ T+L Y+QQL EK +R++ + + F P L++F S HYRMRAEF +WH+G+DL+ Sbjct: 1 MTSTILNTAGYQQQLDEKAERIQNIFVDFDTPELEVFASPAEHYRMRAEFRVWHEGEDLF 60 Query: 60 HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119 +IMF+Q+T+E+ R+D F S LIN LM ++ I+ LR KLFQ+D+L++ S + +V Sbjct: 61 YIMFNQETREKYRVDQFPAASRLINDLMPMLVDAIKPIKALRHKLFQVDFLSTLSGEILV 120 Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179 +++YHR LDD W A +L+ L+ +++ LIGRA K KI LD+DYV E+L V RTL Sbjct: 121 SMLYHRQLDDEWTAEAKQLKQRLNDEGFKLNLIGRARKMKIVLDQDYVIEQLKVHDRTLT 180 Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEI 239 Y+Q+ENSFTQPN + MLEW + T+ +GDLLELYCGNGNFSL LA++F+RVLA E+ Sbjct: 181 YKQVENSFTQPNGEVAQKMLEWAVDCTQDSEGDLLELYCGNGNFSLALAQNFERVLATEL 240 Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFV 297 AKPSV++A+YNIA N+++NV+I+RMS+++FT AM +REF RLKD +D+ SY TIFV Sbjct: 241 AKPSVDSAQYNIAVNNIDNVQIIRMSAEDFTDAMEGKREFRRLKDQNVDLQSYNCNTIFV 300 Query: 298 DPPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHME 357 DPPRSG+D+ T MVQ Y I+YISCNP++L +L IL TH I R ALFDQFPYT HME Sbjct: 301 DPPRSGMDEGTCRMVQGYERIMYISCNPETLKENLDILCETHKITRFALFDQFPYTHHME 360 Query: 358 CGVLLVRK 365 GVLL RK Sbjct: 361 AGVLLERK 368 >gi|269968661|ref|ZP_06182658.1| tRNA (uracil-5-)-methyltransferase [Vibrio alginolyticus 40B] gi|269826748|gb|EEZ81085.1| tRNA (uracil-5-)-methyltransferase [Vibrio alginolyticus 40B] Length = 369 Score = 423 bits (1087), Expect = e-116, Method: Compositional matrix adjust. Identities = 200/359 (55%), Positives = 266/359 (74%), Gaps = 2/359 (0%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTK 68 +Y++QLAEKV+RL M + VP L++F S HYRMRAEF +WH+G+DLY+IMF+Q+T+ Sbjct: 10 RYQEQLAEKVERLTDMFAPYNVPELEVFESPEQHYRMRAEFRVWHEGEDLYYIMFNQETR 69 Query: 69 ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLD 128 E+ R+D F S LIN LM ++ ++ LR KLFQ+D+L++ S + +V+L+YHR LD Sbjct: 70 EKYRVDQFPAASRLINDLMPLLVEAMKDNDSLRRKLFQVDFLSTLSGEILVSLLYHRQLD 129 Query: 129 DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFT 188 + W E A L+ L+ + + +IGRA K KI LDRDYV E+L V G++ IY+Q+ENSFT Sbjct: 130 EEWIENAKALKQRLNDEGFNLNIIGRARKMKIVLDRDYVIEKLDVNGQSYIYQQVENSFT 189 Query: 189 QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248 QPN + MLEW + T+ GDLLELYCGNGNFSL LA++FDRVLA E+AKPSV +A+ Sbjct: 190 QPNGKVAEKMLEWAVDCTQESTGDLLELYCGNGNFSLALAQNFDRVLATELAKPSVVSAQ 249 Query: 249 YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGLDD 306 YNIAAN ++NV+I+R+S++EFTQA+ +REF RL+D +D+ SY TIFVDPPR+G+D Sbjct: 250 YNIAANKIDNVQILRLSAEEFTQAIEGKREFRRLQDAGVDLKSYNCNTIFVDPPRAGMDV 309 Query: 307 ATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 T MVQ Y I+YISCNP++L +L IL TH + R ALFDQFPYT HME GVLL RK Sbjct: 310 DTCKMVQGYERIMYISCNPETLKENLDILCETHNVTRFALFDQFPYTHHMEAGVLLERK 368 >gi|262392929|ref|YP_003284783.1| tRNA (Uracil54-C5-)-methyltransferase [Vibrio sp. Ex25] gi|262336523|gb|ACY50318.1| tRNA (Uracil54-C5-)-methyltransferase [Vibrio sp. Ex25] Length = 369 Score = 422 bits (1086), Expect = e-116, Method: Compositional matrix adjust. Identities = 199/359 (55%), Positives = 266/359 (74%), Gaps = 2/359 (0%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTK 68 +Y++QLAEKV+RL M + +P L++F S HYRMRAEF +WH+G+DLY+IMF+Q+T+ Sbjct: 10 RYQEQLAEKVERLTDMFAPYNMPELEVFESPEQHYRMRAEFRVWHEGEDLYYIMFNQETR 69 Query: 69 ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLD 128 E+ R+D F S LIN LM ++ ++ LR KLFQ+D+L++ S + +V+L+YHR LD Sbjct: 70 EKYRVDQFPAASRLINDLMPLLVEAMKDNDSLRRKLFQVDFLSTLSGEILVSLLYHRQLD 129 Query: 129 DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFT 188 + W E A L+ L+ + + +IGRA K KI LDRDYV E+L V G++ IY+Q+ENSFT Sbjct: 130 EEWIENAKALKQRLNDEGFNLNIIGRARKMKIVLDRDYVIEKLDVNGQSYIYQQVENSFT 189 Query: 189 QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248 QPN + MLEW + T+ GDLLELYCGNGNFSL LA++FDRVLA E+AKPSV +A+ Sbjct: 190 QPNGKVAEKMLEWAVDCTQESTGDLLELYCGNGNFSLALAQNFDRVLATELAKPSVVSAQ 249 Query: 249 YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGLDD 306 YNIAAN ++NV+I+R+S++EFTQA+ +REF RL+D +D+ SY TIFVDPPR+G+D Sbjct: 250 YNIAANKIDNVQILRLSAEEFTQAIEGKREFRRLQDAGVDLKSYNCNTIFVDPPRAGMDA 309 Query: 307 ATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 T MVQ Y I+YISCNP++L +L IL TH + R ALFDQFPYT HME GVLL RK Sbjct: 310 DTCKMVQGYERIMYISCNPETLKENLDILCETHNVTRFALFDQFPYTHHMEAGVLLERK 368 >gi|307258085|ref|ZP_07539837.1| tRNA (uracil-5-)-methyltransferase [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306863448|gb|EFM95379.1| tRNA (uracil-5-)-methyltransferase [Actinobacillus pleuropneumoniae serovar 10 str. D13039] Length = 368 Score = 422 bits (1086), Expect = e-116, Method: Compositional matrix adjust. Identities = 201/367 (54%), Positives = 266/367 (72%), Gaps = 5/367 (1%) Query: 4 TLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDD-----L 58 L I+QY LAEK L +++ F P L++F SE H+RMRAEF +WHD ++ L Sbjct: 2 NLPIEQYADLLAEKAKNLTALLVPFNPPELEVFESETSHFRMRAEFRVWHDTNEVGENEL 61 Query: 59 YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAI 118 YHIMFDQ+TK+R R+D F + LIN +M ++A I+ LL KLFQ+DYL++ S + Sbjct: 62 YHIMFDQETKQRYRVDQFPIANHLINKMMSSLLAEIKGNELLTRKLFQVDYLSTLSGEIA 121 Query: 119 VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTL 178 V+++YH+ L++ W+ A L+ L + +++Q+IGRA K KI LDRDYV+E L V GR L Sbjct: 122 VSMLYHKKLNEEWQAEAAALKARLEHQGFKVQIIGRATKQKIALDRDYVEEVLPVDGRNL 181 Query: 179 IYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVE 238 IYRQ+ENSFTQPNA +N+ MLEW + T+ GDLLELYCGNGNFS+ LA +F +VLA E Sbjct: 182 IYRQVENSFTQPNAKMNIKMLEWARSCTRHSSGDLLELYCGNGNFSIALAENFRKVLATE 241 Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298 I+K SV++A+YNI N ++N++I+RMS++EFTQAM REFNRLK ID+ +Y TIFVD Sbjct: 242 ISKSSVQSAQYNIEQNGIDNLQIIRMSAEEFTQAMNGVREFNRLKGIDLKAYDCNTIFVD 301 Query: 299 PPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMEC 358 PPR+GLD T+ MVQAY ILYISCNP +L +L+ L+ TH IER ALFDQFPYT H+E Sbjct: 302 PPRAGLDQDTLNMVQAYERILYISCNPHTLAENLAQLTRTHRIERAALFDQFPYTHHVES 361 Query: 359 GVLLVRK 365 V L+RK Sbjct: 362 SVWLIRK 368 >gi|54310518|ref|YP_131538.1| tRNA (uracil-5-)-methyltransferase [Photobacterium profundum SS9] gi|50401422|sp|Q6LLU2|TRMA_PHOPR RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|46914961|emb|CAG21736.1| putative tRNA (uracil-5-)-methyltransferase [Photobacterium profundum SS9] Length = 368 Score = 422 bits (1085), Expect = e-116, Method: Compositional matrix adjust. Identities = 197/358 (55%), Positives = 263/358 (73%), Gaps = 2/358 (0%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69 Y+QQL EK +R++ + F+ P L++F S HYRMRAEF +WH+G+DLY++MF+Q+T+E Sbjct: 11 YQQQLDEKAERIQNIFEDFETPELEVFASPAEHYRMRAEFRMWHEGEDLYYVMFNQETRE 70 Query: 70 RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDD 129 + R+D F S LIN LM ++ ++ LR KLFQ+D+L++ S + +V+L+YHR LD+ Sbjct: 71 KYRVDQFPAASRLINDLMPLLVEALKPSQTLRHKLFQVDFLSTLSGEILVSLLYHRQLDE 130 Query: 130 AWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQ 189 W +L+ L+ + + +IGRA K KI DRDYV E+L V +TL Y+Q+ENSFTQ Sbjct: 131 EWEVEIKKLKQCLNDEGFNLNIIGRARKMKIVADRDYVIEKLNVFDQTLTYKQVENSFTQ 190 Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249 PN + MLEW + T+ GDLLELYCGNGNFSL LA++F+RVLA E+AKPSVE+A+Y Sbjct: 191 PNGEVAQKMLEWAVDCTQDSDGDLLELYCGNGNFSLALAKNFERVLATELAKPSVESAQY 250 Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK--DIDIHSYRFKTIFVDPPRSGLDDA 307 NIA N+++NV+IVRMS+++FT AM +REF RLK ++D+ SY TIFVDPPRSG+D+ Sbjct: 251 NIAVNNIDNVQIVRMSAEDFTDAMAGKREFRRLKAQNVDLQSYNCNTIFVDPPRSGMDEG 310 Query: 308 TVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 T MVQ Y I+YISCNPD+L +L ILS TH I R ALFDQFPYT HME GVLL RK Sbjct: 311 TCRMVQGYERIMYISCNPDTLKENLEILSQTHKITRFALFDQFPYTHHMEAGVLLERK 368 >gi|307262483|ref|ZP_07544128.1| tRNA (uracil-5-)-methyltransferase [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306867860|gb|EFM99691.1| tRNA (uracil-5-)-methyltransferase [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 368 Score = 422 bits (1084), Expect = e-116, Method: Compositional matrix adjust. Identities = 201/367 (54%), Positives = 265/367 (72%), Gaps = 5/367 (1%) Query: 4 TLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDD-----L 58 L I+QY LAEK L ++ F P L++F SE H+RMRAEF +WHD ++ L Sbjct: 2 NLPIEQYADLLAEKAKNLTALLAPFNPPELEVFESETSHFRMRAEFRVWHDTNEVGENEL 61 Query: 59 YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAI 118 YHIMFDQ+TK+R R++ F + LIN +M ++A I+ LL KLFQ+DYL++ S + Sbjct: 62 YHIMFDQETKQRYRVEQFPIANHLINKMMSSLLAEIKGNELLTRKLFQVDYLSTLSGEIA 121 Query: 119 VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTL 178 V+++YH+ L++ W+ A L+ L + +++Q+IGRA K KI LDRDYV+E L V GR L Sbjct: 122 VSMLYHKKLNEEWQAEAAALKARLEHQGFKVQIIGRATKQKIALDRDYVEEVLLVDGRNL 181 Query: 179 IYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVE 238 IYRQ+ENSFTQPNA +N+ MLEW + TK GDLLELYCGNGNFS+ LA +F +VLA E Sbjct: 182 IYRQVENSFTQPNAKMNIKMLEWARSCTKNSTGDLLELYCGNGNFSIALAENFRQVLATE 241 Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298 I+K SV++A+YNI N ++N++I+RMS++EFTQAM REFNRLK ID+ +Y TIFVD Sbjct: 242 ISKSSVQSAQYNIEQNGIDNLQIIRMSAEEFTQAMNGVREFNRLKGIDLKAYDCNTIFVD 301 Query: 299 PPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMEC 358 PPR+GLD T+ MVQAY ILYISCNP +L +L+ L+ TH IER ALFDQFPYT H+E Sbjct: 302 PPRAGLDQDTLNMVQAYERILYISCNPHTLAENLAQLTRTHRIERAALFDQFPYTHHVES 361 Query: 359 GVLLVRK 365 V L+RK Sbjct: 362 SVWLIRK 368 >gi|254362737|ref|ZP_04978821.1| tRNA (uracil-5-)-methyltransferase [Mannheimia haemolytica PHL213] gi|153094362|gb|EDN75217.1| tRNA (uracil-5-)-methyltransferase [Mannheimia haemolytica PHL213] Length = 363 Score = 422 bits (1084), Expect = e-116, Method: Compositional matrix adjust. Identities = 198/362 (54%), Positives = 264/362 (72%) Query: 4 TLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63 TL I+QY LA+K + L ++ F P +++F S+P H+RMRAEF +WH+ +LYHIMF Sbjct: 2 TLPIEQYSDLLAKKTENLTALLKPFNPPAIEVFASKPSHFRMRAEFRVWHEEGELYHIMF 61 Query: 64 DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIY 123 + +TK R R+D F S LIN +M ++A I+ LL KLFQIDYL++ S + V+++Y Sbjct: 62 NPETKARYRVDSFPIASELINHMMTALLAEIKGNELLTRKLFQIDYLSTLSGEIAVSMLY 121 Query: 124 HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQI 183 H+ L++ W E A L+ L + +++Q+IGRANK KI LD DYV+E L V G+ +YRQ+ Sbjct: 122 HKSLNEEWVEQANALKSRLEQQGFKVQIIGRANKQKIALDCDYVEEILPVHGKNYVYRQV 181 Query: 184 ENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 ENSFTQPNA +N+ MLEW TK +GDLLELYCGNGNFS+ LA +F +VLA EI+K S Sbjct: 182 ENSFTQPNAEMNIKMLEWARNCTKNSEGDLLELYCGNGNFSIALAENFRKVLATEISKSS 241 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 V++A+YNI N + N++I+RMS++EFTQAM R F RLK ID+++Y TIFVDPPR+G Sbjct: 242 VQSAQYNIEKNGIVNLQIIRMSAEEFTQAMNGVRAFYRLKGIDLNAYECNTIFVDPPRAG 301 Query: 304 LDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363 LD AT+ MVQAY ILYISCNP++L +L LS TH IE+ ALFDQFPYT H+E GV L+ Sbjct: 302 LDQATLNMVQAYERILYISCNPETLAENLQQLSQTHRIEKAALFDQFPYTHHIESGVWLI 361 Query: 364 RK 365 RK Sbjct: 362 RK 363 >gi|165977424|ref|YP_001653017.1| tRNA (uracil-5-)-methyltransferase [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|226706004|sp|B0BU06|TRMA_ACTPJ RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|165877525|gb|ABY70573.1| tRNA (uracil-5-)-methyltransferase [Actinobacillus pleuropneumoniae serovar 3 str. JL03] Length = 368 Score = 422 bits (1084), Expect = e-116, Method: Compositional matrix adjust. Identities = 201/367 (54%), Positives = 265/367 (72%), Gaps = 5/367 (1%) Query: 4 TLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDD-----L 58 L I+QY LAEK L ++ F P L++F SE H+RMRAEF +WHD ++ L Sbjct: 2 NLPIEQYADLLAEKAKNLTALLAPFNPPELEVFESETSHFRMRAEFRVWHDTNEVGENEL 61 Query: 59 YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAI 118 YHIMFDQ+TK+R R+D F + LIN +M ++A I+ LL KLFQ+DYL++ S + Sbjct: 62 YHIMFDQETKQRYRVDQFPIANHLINKMMSSLLAEIKGNELLTRKLFQVDYLSTLSGEIA 121 Query: 119 VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTL 178 V+++YH+ L++ W+ A L+ L + +++Q++GRA K KI LDRDYV+E L V GR L Sbjct: 122 VSMLYHKKLNEEWQAEAAALKARLEHQGFKVQILGRATKQKIALDRDYVEEVLPVDGRNL 181 Query: 179 IYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVE 238 IYRQ+ENSFTQPNA +N+ MLEW + T+ GDLLELYCGNGNFS+ LA +F +VLA E Sbjct: 182 IYRQVENSFTQPNAKMNIKMLEWARSCTRHSSGDLLELYCGNGNFSIALAENFRKVLATE 241 Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298 I+K SV++A+YNI N ++N++I+RMS++EFTQAM REFNRLK ID+ +Y TIFVD Sbjct: 242 ISKSSVQSAQYNIEQNGIDNLQIIRMSAEEFTQAMNGVREFNRLKGIDLKAYDCNTIFVD 301 Query: 299 PPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMEC 358 PPR+GLD T+ MVQAY ILYISCNP +L +L L+ TH IER ALFDQFPYT H+E Sbjct: 302 PPRAGLDQDTLNMVQAYERILYISCNPHTLADNLQQLTQTHRIERAALFDQFPYTHHVES 361 Query: 359 GVLLVRK 365 GV L+RK Sbjct: 362 GVWLIRK 368 >gi|261491879|ref|ZP_05988458.1| hypothetical protein COK_0317 [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261312534|gb|EEY13658.1| hypothetical protein COK_0317 [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 363 Score = 421 bits (1082), Expect = e-115, Method: Compositional matrix adjust. Identities = 198/362 (54%), Positives = 263/362 (72%) Query: 4 TLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63 TL I+QY LA+K + L ++ F P +++F S+P H+RMRAEF +WH+ +LYHIMF Sbjct: 2 TLPIEQYSDLLAKKTENLTALLKPFNPPAIEVFASKPSHFRMRAEFRVWHEEGELYHIMF 61 Query: 64 DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIY 123 + TK R R+D F S LIN +M ++A I+ LL KLFQIDYL++ S + V+++Y Sbjct: 62 NPATKARYRVDSFPIASELINHMMTALLAEIKGNELLTRKLFQIDYLSTLSGEIAVSMLY 121 Query: 124 HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQI 183 H+ L++ W E A L+ L + +++Q+IGRANK KI LD DYV+E L V G+ +YRQ+ Sbjct: 122 HKSLNEEWVEQANALKSRLEQQGFKVQIIGRANKQKIALDCDYVEEILPVHGKNYVYRQV 181 Query: 184 ENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 ENSFTQPNA +N+ MLEW TK +GDLLELYCGNGNFS+ LA +F +VLA EI+K S Sbjct: 182 ENSFTQPNAEMNIKMLEWARNCTKNSEGDLLELYCGNGNFSIALAENFRKVLATEISKSS 241 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 V++A+YNI N + N++I+RMS++EFTQAM R F RLK ID+++Y TIFVDPPR+G Sbjct: 242 VQSAQYNIEKNGIVNLQIIRMSAEEFTQAMNGVRAFYRLKGIDLNAYECNTIFVDPPRAG 301 Query: 304 LDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363 LD AT+ MVQAY ILYISCNP++L +L LS TH IE+ ALFDQFPYT H+E GV L+ Sbjct: 302 LDQATLNMVQAYERILYISCNPETLAENLQQLSQTHRIEKAALFDQFPYTHHIESGVWLI 361 Query: 364 RK 365 RK Sbjct: 362 RK 363 >gi|308047961|ref|YP_003911527.1| tRNA (uracil-5-)-methyltransferase [Ferrimonas balearica DSM 9799] gi|307630151|gb|ADN74453.1| tRNA (uracil-5-)-methyltransferase [Ferrimonas balearica DSM 9799] Length = 364 Score = 421 bits (1081), Expect = e-115, Method: Compositional matrix adjust. Identities = 203/357 (56%), Positives = 262/357 (73%), Gaps = 5/357 (1%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTK 68 QY+ QL EK +R+R + F P L++F SEP HYRMRAEF +WHDGDDL +IMFDQ + Sbjct: 10 QYQTQLDEKCERMRALFAPFNAPELEVFPSEPEHYRMRAEFRVWHDGDDLNYIMFDQTQQ 69 Query: 69 ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLD 128 ++ + ++P S LIN M ++ ++ +P+LR KLFQ+D+L++ S + +++L+YHR LD Sbjct: 70 AKVEVTQYLPASALINEYMPRLIEALKPDPVLRRKLFQVDFLSTLSGELVISLLYHRQLD 129 Query: 129 DAWRECAIRLRDALHAR-KYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSF 187 DAW + AIR L AR ++ IGRA K K+ L++DYVDE L V G+ YRQIEN+F Sbjct: 130 DAWCD-AIR---ELRARWDNKVHFIGRARKQKVTLEQDYVDEVLHVHGQPYHYRQIENAF 185 Query: 188 TQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA 247 TQPN + MLEW + AT+ GDLLELYCGNGNFSL LA++F+RVLA E+AKPSVEAA Sbjct: 186 TQPNGKVAEKMLEWAVDATRNSDGDLLELYCGNGNFSLALAQNFERVLATELAKPSVEAA 245 Query: 248 RYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307 +YNIA N+++NV I+RMS+++FT A+ REF RLK ID+ YR TIFVDPPR+GLD A Sbjct: 246 QYNIAKNNIDNVTILRMSAEDFTDAINGVREFRRLKGIDLSGYRCNTIFVDPPRAGLDPA 305 Query: 308 TVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 T MVQ Y ILYISCNP++L +L LS TH + RLALFDQFPYT HME GVLL R Sbjct: 306 TEKMVQGYDRILYISCNPETLLENLKTLSQTHKLSRLALFDQFPYTHHMEAGVLLER 362 >gi|307251253|ref|ZP_07533174.1| tRNA (uracil-5-)-methyltransferase [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306856769|gb|EFM88904.1| tRNA (uracil-5-)-methyltransferase [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 368 Score = 421 bits (1081), Expect = e-115, Method: Compositional matrix adjust. Identities = 201/367 (54%), Positives = 266/367 (72%), Gaps = 5/367 (1%) Query: 4 TLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDD-----L 58 L I++Y LAEK L +++ F P L++F SE H+RMRAEF +WHD ++ L Sbjct: 2 NLPIERYADLLAEKAKNLTALLVPFNPPELEVFESETSHFRMRAEFRVWHDTNEVGENEL 61 Query: 59 YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAI 118 YHIMFDQ+TK+R R++ F + LIN +M ++A I+ LL KLFQ+DYL++ S + Sbjct: 62 YHIMFDQETKQRYRVEQFPIANHLINKMMSSLLAEIKGNELLTRKLFQVDYLSTLSGEIA 121 Query: 119 VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTL 178 V+++YH+ L++ W+ A L+ L + +++Q+IGRA K KI LDRDYV+E L V GR L Sbjct: 122 VSMLYHKKLNEEWQAEAAALKARLEHQGFKVQIIGRATKQKIALDRDYVEEVLPVDGRNL 181 Query: 179 IYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVE 238 IYRQ+ENSFTQPNA +N+ MLEW + T+ GDLLELYCGNGNFS+ LA +F +VLA E Sbjct: 182 IYRQVENSFTQPNAKMNIKMLEWARSCTRHSSGDLLELYCGNGNFSIALAENFRKVLATE 241 Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298 I+K SV++A+YNI N ++N++I+RMS++EFTQAM REFNRLK ID+ +Y TIFVD Sbjct: 242 ISKSSVQSAQYNIEQNGIDNLQIIRMSAEEFTQAMNGVREFNRLKGIDLKAYDCNTIFVD 301 Query: 299 PPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMEC 358 PPR+GLD T+ MVQAY ILYISCNP +L +L LS TH IER ALFDQFPYT H+E Sbjct: 302 PPRAGLDQDTLNMVQAYERILYISCNPYTLAENLRQLSLTHRIERAALFDQFPYTHHVES 361 Query: 359 GVLLVRK 365 GV L+RK Sbjct: 362 GVWLIRK 368 >gi|330444843|ref|ZP_08308498.1| tRNA (uracil-5-)-methyltransferase [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328489153|dbj|GAA02995.1| tRNA (uracil-5-)-methyltransferase [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 368 Score = 421 bits (1081), Expect = e-115, Method: Compositional matrix adjust. Identities = 198/368 (53%), Positives = 270/368 (73%), Gaps = 3/368 (0%) Query: 1 MSGTLL-IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLY 59 M+ T+L Y+QQL EK +R++ + F P L++F S HYRMRAEF +WH+G+DL+ Sbjct: 1 MTSTILNTADYQQQLDEKAERIQNIFADFDTPELEVFASPAEHYRMRAEFRVWHEGEDLF 60 Query: 60 HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119 +IMF+Q+T+E+ R+D F S LIN LM ++ I+ LR KLFQ+D+L++ S + +V Sbjct: 61 YIMFNQETREKYRVDQFPAASRLINDLMPMLVDAIKPIKALRHKLFQVDFLSTLSGEILV 120 Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179 +++YHR LDD W A +L+ L+ +++ +IGRA K KI LD+DYV E+L + RTL Sbjct: 121 SMLYHRQLDDEWTAEAKQLKQRLNDEGFKLNIIGRARKMKIVLDQDYVIEQLKINDRTLT 180 Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEI 239 Y+Q+ENSFTQPN + MLEW + T+ +GDLLELYCGNGNFSL LA++F+RVLA E+ Sbjct: 181 YKQVENSFTQPNGEVAQKMLEWAVDCTQDSEGDLLELYCGNGNFSLALAQNFERVLATEL 240 Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFV 297 AKPSV++A+YNIA N+++NV+I+RMS+++FT AM +REF RLK+ +D+ SY TIFV Sbjct: 241 AKPSVDSAQYNIAVNNIDNVQIIRMSAEDFTDAMEGKREFRRLKEQNVDLQSYNCNTIFV 300 Query: 298 DPPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHME 357 DPPRSG+D+ T MVQ Y I+YISCNP++L +L IL TH I R ALFDQFPYT HME Sbjct: 301 DPPRSGMDEGTCRMVQGYDRIMYISCNPETLKENLDILGETHRITRFALFDQFPYTHHME 360 Query: 358 CGVLLVRK 365 GVLL RK Sbjct: 361 AGVLLERK 368 >gi|261494651|ref|ZP_05991131.1| hypothetical protein COI_0439 [Mannheimia haemolytica serotype A2 str. OVINE] gi|261309616|gb|EEY10839.1| hypothetical protein COI_0439 [Mannheimia haemolytica serotype A2 str. OVINE] Length = 363 Score = 420 bits (1080), Expect = e-115, Method: Compositional matrix adjust. Identities = 198/362 (54%), Positives = 264/362 (72%) Query: 4 TLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63 TL I+QY LA+K + L ++ F P +++F S+P H+RMRAEF +WH+ +LYHIMF Sbjct: 2 TLPIEQYSDLLAKKTENLTALLKPFNPPAIEVFASKPSHFRMRAEFRVWHEEGELYHIMF 61 Query: 64 DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIY 123 + +TK R R+D F S LIN +M ++A I+ LL KLFQIDYL++ S + V+++Y Sbjct: 62 NPETKARYRVDSFPIASELINHMMTALLAEIKGNELLTRKLFQIDYLSTLSGEIAVSMLY 121 Query: 124 HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQI 183 H+ L++ W E A L+ L + +++Q+IGRANK KI LD DYV+E L V G+ +YRQ+ Sbjct: 122 HKSLNEEWVEQANALKSRLEQQGFKMQIIGRANKQKIALDCDYVEEILPVHGKNYVYRQV 181 Query: 184 ENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 ENSFTQPNA +N+ MLEW TK +GDLLELYCGNGNFS+ LA +F +VLA EI+K S Sbjct: 182 ENSFTQPNAEMNIKMLEWARNCTKNSEGDLLELYCGNGNFSIALAENFRKVLATEISKSS 241 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 V++A+YNI N + N++I+RMS++EFTQAM R F RLK ID+++Y TIFVDPPR+G Sbjct: 242 VQSAQYNIEKNGIVNLQIIRMSAEEFTQAMNGVRAFYRLKGIDLNAYECNTIFVDPPRAG 301 Query: 304 LDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363 LD AT+ MVQAY ILYISCNP++L +L LS TH IE+ ALFDQFPYT H+E GV L+ Sbjct: 302 LDQATLDMVQAYERILYISCNPETLAENLQQLSQTHRIEKAALFDQFPYTHHIESGVWLI 361 Query: 364 RK 365 RK Sbjct: 362 RK 363 >gi|190151336|ref|YP_001969861.1| tRNA (uracil-5-)-methyltransferase [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|303251754|ref|ZP_07337925.1| tRNA (uracil-5-)-methyltransferase [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307249054|ref|ZP_07531062.1| tRNA (uracil-5-)-methyltransferase [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307264691|ref|ZP_07546271.1| tRNA (uracil-5-)-methyltransferase [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|226706005|sp|B3GZC6|TRMA_ACTP7 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|189916467|gb|ACE62719.1| tRNA (uracil-5-)-methyltransferase [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|302649184|gb|EFL79369.1| tRNA (uracil-5-)-methyltransferase [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|306854512|gb|EFM86707.1| tRNA (uracil-5-)-methyltransferase [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306870003|gb|EFN01767.1| tRNA (uracil-5-)-methyltransferase [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 368 Score = 420 bits (1080), Expect = e-115, Method: Compositional matrix adjust. Identities = 201/367 (54%), Positives = 266/367 (72%), Gaps = 5/367 (1%) Query: 4 TLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDD-----L 58 L I++Y LAEK L +++ F P L++F SE H+RMRAEF +WHD ++ L Sbjct: 2 NLPIERYADLLAEKAKNLTALLVPFNPPELEVFESETSHFRMRAEFRVWHDTNEVGENEL 61 Query: 59 YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAI 118 YHIMFDQ+TK+R R++ F + LIN +M ++A I+ LL KLFQ+DYL++ S + Sbjct: 62 YHIMFDQETKQRYRVEQFPIANHLINKMMSSLLAEIKGNELLTRKLFQVDYLSTLSGEIA 121 Query: 119 VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTL 178 V+++YH+ L++ W+ A L+ L + +++Q+IGRA K KI LDRDYV+E L V GR L Sbjct: 122 VSMLYHKKLNEEWQAEAAALKARLEHQGFKVQIIGRATKQKIALDRDYVEEVLPVDGRNL 181 Query: 179 IYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVE 238 IYRQ+ENSFTQPNA +N+ MLEW + T+ GDLLELYCGNGNFS+ LA +F +VLA E Sbjct: 182 IYRQVENSFTQPNAKMNIKMLEWARSCTRHSSGDLLELYCGNGNFSIALAENFRQVLATE 241 Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298 I+K SV++A+YNI N ++N++I+RMS++EFTQAM REFNRLK ID+ +Y TIFVD Sbjct: 242 ISKSSVQSAQYNIEQNGIDNLQIIRMSAEEFTQAMNGVREFNRLKGIDLKAYDCNTIFVD 301 Query: 299 PPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMEC 358 PPR+GLD T+ MVQAY ILYISCNP +L +L LS TH IER ALFDQFPYT H+E Sbjct: 302 PPRAGLDQDTLNMVQAYERILYISCNPYTLAENLRQLSLTHRIERAALFDQFPYTHHVES 361 Query: 359 GVLLVRK 365 GV L+RK Sbjct: 362 GVWLIRK 368 >gi|90414701|ref|ZP_01222672.1| tRNA (uracil-5-)-methyltransferase [Photobacterium profundum 3TCK] gi|90324243|gb|EAS40818.1| tRNA (uracil-5-)-methyltransferase [Photobacterium profundum 3TCK] Length = 368 Score = 420 bits (1079), Expect = e-115, Method: Compositional matrix adjust. Identities = 196/358 (54%), Positives = 263/358 (73%), Gaps = 2/358 (0%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69 Y+QQL EK +R++ + F+ P L++F S HYRMRAEF +WH+G+DLY++MF+Q+T+E Sbjct: 11 YQQQLDEKAERIQNIFEDFETPELEVFASPAEHYRMRAEFRMWHEGEDLYYVMFNQETRE 70 Query: 70 RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDD 129 + R+D F S LIN LM ++ ++ LR KLFQ+D+L++ S + +V+L+YHR LD+ Sbjct: 71 KYRVDQFPAASRLINDLMPLLIEALKPNQALRHKLFQVDFLSTLSGEILVSLLYHRQLDE 130 Query: 130 AWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQ 189 W +L+ L+ + + +IGRA K KI DRDYV E+L V + L Y+Q+ENSFTQ Sbjct: 131 EWEIEIKKLKQCLNDEGFNLNIIGRARKMKIVADRDYVIEKLNVFDQPLTYKQVENSFTQ 190 Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249 PN + MLEW + T+ +GDLLELYCGNGNFSL LA++F+RVLA E+AKPSVE+A+Y Sbjct: 191 PNGEVAQKMLEWAVDCTQDSEGDLLELYCGNGNFSLALAKNFERVLATELAKPSVESAQY 250 Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK--DIDIHSYRFKTIFVDPPRSGLDDA 307 NIA N+++NV+IVRMS+++FT AM +REF RLK ++D+ SY TIFVDPPRSG+D+ Sbjct: 251 NIAVNNIDNVQIVRMSAEDFTDAMAGKREFRRLKAQNVDLQSYNCNTIFVDPPRSGMDEG 310 Query: 308 TVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 T MVQ Y I+YISCNPD+L +L ILS TH I R ALFDQFPYT HME GVLL RK Sbjct: 311 TCRMVQGYERIMYISCNPDTLKENLEILSQTHKITRFALFDQFPYTHHMEAGVLLERK 368 >gi|148981485|ref|ZP_01816425.1| tRNA (uracil-5-)-methyltransferase [Vibrionales bacterium SWAT-3] gi|145960840|gb|EDK26172.1| tRNA (uracil-5-)-methyltransferase [Vibrionales bacterium SWAT-3] Length = 369 Score = 420 bits (1079), Expect = e-115, Method: Compositional matrix adjust. Identities = 199/359 (55%), Positives = 264/359 (73%), Gaps = 2/359 (0%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTK 68 +Y++QLAEK RL +M + VP L+++ S HYRMRAEF +WH+GDD+Y++MF+Q+TK Sbjct: 10 RYQEQLAEKTKRLTEMFSEYNVPELEVYESPEQHYRMRAEFRVWHEGDDMYYVMFNQETK 69 Query: 69 ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLD 128 E+ R+D F S LIN LM ++ ++ LR KLFQ+D+L++ S + +V+L+YHR L Sbjct: 70 EKYRVDQFPAASRLINDLMPLLVDAMKDNHSLRHKLFQVDFLSTLSGEILVSLLYHRQLG 129 Query: 129 DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFT 188 + W + A L+ L+ + + LIGRA K KI LDRDYV E+L V G + IY+Q+ENSFT Sbjct: 130 EQWIQDAKALKQQLNDEGFNLNLIGRARKMKIVLDRDYVIEKLDVNGDSYIYQQVENSFT 189 Query: 189 QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248 QPN + MLEW + T+ +GDLLELYCGNGNFSL LA++F+RVLA E+AKPSVE+A+ Sbjct: 190 QPNGKVAEKMLEWAVDCTQDSKGDLLELYCGNGNFSLALAQNFERVLATELAKPSVESAQ 249 Query: 249 YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK--DIDIHSYRFKTIFVDPPRSGLDD 306 YNIAAN ++NV+I+RMS+++FT AM +REF RL+ +ID+ SY TIFVDPPRSG+D Sbjct: 250 YNIAANKIDNVQIIRMSAEDFTVAMEGKREFRRLQQANIDLKSYNCNTIFVDPPRSGMDV 309 Query: 307 ATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 T MVQ Y I+YISCNP++L +L ILS TH I R ALFDQFPYT HME GV L RK Sbjct: 310 DTCKMVQGYERIMYISCNPETLKENLEILSETHDITRFALFDQFPYTHHMEAGVFLERK 368 >gi|84394318|ref|ZP_00993041.1| tRNA (uracil-5-)-methyltransferase [Vibrio splendidus 12B01] gi|84375048|gb|EAP91972.1| tRNA (uracil-5-)-methyltransferase [Vibrio splendidus 12B01] Length = 369 Score = 420 bits (1079), Expect = e-115, Method: Compositional matrix adjust. Identities = 199/358 (55%), Positives = 263/358 (73%), Gaps = 2/358 (0%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69 Y++QLAEK +RL +M + VP L+++ S HYRMRAEF +WH+GDD+Y++MF+Q+TKE Sbjct: 11 YQEQLAEKTERLTEMFSQYDVPELEVYESPEQHYRMRAEFRVWHEGDDMYYVMFNQETKE 70 Query: 70 RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDD 129 + R+D F S LIN LM + ++ LR KLFQ+D+L++ S + +V+L+YHR L + Sbjct: 71 KYRVDQFPAASRLINDLMPLLTDAMKDNHSLRHKLFQVDFLSTLSGEILVSLLYHRQLGE 130 Query: 130 AWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQ 189 W + A L+ L+ + + LIGRA K KI LDRDYV E+L V G + IY+Q+ENSFTQ Sbjct: 131 QWIQDAKALKQQLNDEGFNLNLIGRARKMKIVLDRDYVIEKLDVNGDSYIYQQVENSFTQ 190 Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249 PN + MLEW + T+ +GDLLELYCGNGNFSL LA++F+RVLA E+AKPSVE+A+Y Sbjct: 191 PNGKVAEKMLEWAVDCTQDSKGDLLELYCGNGNFSLALAQNFERVLATELAKPSVESAQY 250 Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK--DIDIHSYRFKTIFVDPPRSGLDDA 307 NIAAN ++NV+I+RMS+++FT AM +REF RL+ +ID+ SY TIFVDPPRSG+D Sbjct: 251 NIAANKIDNVQIIRMSAEDFTVAMEGKREFRRLQQANIDLKSYNCNTIFVDPPRSGMDVD 310 Query: 308 TVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 T MVQ Y I+YISCNP++L +L ILS TH I R ALFDQFPYT HME GV L RK Sbjct: 311 TCKMVQGYERIMYISCNPETLKENLDILSETHDITRFALFDQFPYTHHMEAGVFLERK 368 >gi|86148652|ref|ZP_01066933.1| tRNA (uracil-5-)-methyltransferase [Vibrio sp. MED222] gi|218710898|ref|YP_002418519.1| tRNA (uracil-5-)-methyltransferase [Vibrio splendidus LGP32] gi|254789082|sp|B7VM88|TRMA_VIBSL RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|85833571|gb|EAQ51748.1| tRNA (uracil-5-)-methyltransferase [Vibrio sp. MED222] gi|218323917|emb|CAV20278.1| tRNA (uracil-5-)-methyltransferase [Vibrio splendidus LGP32] Length = 369 Score = 420 bits (1079), Expect = e-115, Method: Compositional matrix adjust. Identities = 199/358 (55%), Positives = 262/358 (73%), Gaps = 2/358 (0%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69 Y++QLAEK +RL +M + VP L+++ S HYRMRAEF +WH+GDD+Y++MF+Q+TKE Sbjct: 11 YQEQLAEKTERLTEMFSEYNVPELEVYESPEQHYRMRAEFRVWHEGDDMYYVMFNQETKE 70 Query: 70 RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDD 129 + R+D F S LIN LM + ++ LR KLFQ+D+L++ S + +V+L+YHR L + Sbjct: 71 KYRVDQFPAASRLINDLMPLLTDAMKDNHSLRHKLFQVDFLSTLSGEILVSLLYHRQLGE 130 Query: 130 AWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQ 189 W + A L+ L+ + + LIGRA K KI LDRDYV E+L V G + IY+Q+ENSFTQ Sbjct: 131 QWIQDAKALKQQLNDEGFNLNLIGRARKMKIVLDRDYVIEKLDVNGDSYIYQQVENSFTQ 190 Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249 PN + MLEW + T+ +GDLLELYCGNGNFSL LA++F+RVLA E+AKPSVE+A+Y Sbjct: 191 PNGKVAEKMLEWAVDCTQDSKGDLLELYCGNGNFSLALAQNFERVLATELAKPSVESAQY 250 Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK--DIDIHSYRFKTIFVDPPRSGLDDA 307 NIAAN + NV+I+RMS+++FT AM +REF RL+ +ID+ SY TIFVDPPRSG+D Sbjct: 251 NIAANKIENVQIIRMSAEDFTVAMEGKREFRRLQQANIDLKSYNCNTIFVDPPRSGMDVD 310 Query: 308 TVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 T MVQ Y I+YISCNP++L +L ILS TH I R ALFDQFPYT HME GV L RK Sbjct: 311 TCKMVQGYERIMYISCNPETLKENLDILSETHDITRFALFDQFPYTHHMEAGVFLERK 368 >gi|262827630|sp|B4RYR7|TRMA_ALTMD RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT Length = 369 Score = 419 bits (1078), Expect = e-115, Method: Compositional matrix adjust. Identities = 189/357 (52%), Positives = 258/357 (72%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTK 68 +Y+ QL EKVDRL ++ F P ++ S+P HYRMRAEF +WH+GDDL+HIMFDQ+TK Sbjct: 12 RYQAQLDEKVDRLSALLSPFNAPKTSVYPSQPTHYRMRAEFRVWHEGDDLFHIMFDQETK 71 Query: 69 ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLD 128 E+ R+D F P IN M +++ IR +LR KLFQIDYL++ S + +++L+YHR LD Sbjct: 72 EKYRVDSFPPACKTINDAMEKLLNEIRPNEILRKKLFQIDYLSALSGELVISLLYHRQLD 131 Query: 129 DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFT 188 D W A L+ L ++ +IGRA K K +D D+V ERL V G +++ IENSFT Sbjct: 132 DEWEAAAKSLKSTLETHFPKVNIIGRARKQKRIIDNDFVIERLPVKGNEFVFKHIENSFT 191 Query: 189 QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248 QPNA +N M+EW L K + GDLLE+YCG GNFSL LA HFD V+ EIAKPSV+AA+ Sbjct: 192 QPNAEVNCKMIEWALDCVKPLSGDLLEMYCGAGNFSLPLALHFDNVVGTEIAKPSVQAAQ 251 Query: 249 YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDAT 308 +NI N ++NVKIVR++++EFTQAM+ +R F+RL+ ID+ Y F T+ VDPPR+GLD+ + Sbjct: 252 FNIEQNRLHNVKIVRLAAEEFTQAMKGKRTFSRLEGIDLSEYNFTTVLVDPPRAGLDEDS 311 Query: 309 VGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 + M+Q Y +I+YISCNP++L ++L +LS TH + + ALFDQFP+T H+E GVLL RK Sbjct: 312 LRMIQDYDNIVYISCNPETLAQNLELLSETHDVAQSALFDQFPFTHHIEAGVLLTRK 368 >gi|269103682|ref|ZP_06156379.1| tRNA (Uracil54-C5-)-methyltransferase [Photobacterium damselae subsp. damselae CIP 102761] gi|268163580|gb|EEZ42076.1| tRNA (Uracil54-C5-)-methyltransferase [Photobacterium damselae subsp. damselae CIP 102761] Length = 368 Score = 419 bits (1078), Expect = e-115, Method: Compositional matrix adjust. Identities = 196/358 (54%), Positives = 261/358 (72%), Gaps = 2/358 (0%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69 Y+ QL EK R++ + F P L+++ S HYRMRAEF +WH+G+DLY+IMF+QQT+E Sbjct: 11 YQHQLDEKAQRIQNIFADFDTPELEVYASPAEHYRMRAEFRVWHEGEDLYYIMFNQQTRE 70 Query: 70 RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDD 129 + R+D F S LIN LM ++ ++ LR KLFQ+D+L++ S + +V+++YHR LD+ Sbjct: 71 KYRVDQFPAASRLINDLMPLLIEAVKPHRSLRHKLFQVDFLSTLSGEILVSMLYHRQLDE 130 Query: 130 AWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQ 189 W A L+ L+ +++ +IGRA K K LD+++V E+L V RTL Y+Q+ENSFTQ Sbjct: 131 EWETLAKALKQQLNDEGFKLNIIGRARKQKKVLDQEFVIEKLNVFDRTLTYKQVENSFTQ 190 Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249 PN + MLEW + T+ QGDLLELYCGNGNFSL LA++F+RVLA E+AKPSVE+A+Y Sbjct: 191 PNGTVAQKMLEWAVDCTRDSQGDLLELYCGNGNFSLALAQNFERVLATELAKPSVESAQY 250 Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGLDDA 307 NIA N+++NV+I+RMS++EFT+AM REF RLKD ID+ SY TIFVDPPRSG+D+ Sbjct: 251 NIAVNNIDNVQIIRMSAEEFTEAMEGRREFRRLKDNNIDLQSYNCNTIFVDPPRSGMDEG 310 Query: 308 TVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 T MVQ Y I+YISCNP++L +L ILS TH I R ALFDQFPYT HME GV L RK Sbjct: 311 TCRMVQGYERIMYISCNPETLKENLDILSETHRITRFALFDQFPYTHHMEAGVFLERK 368 >gi|332142722|ref|YP_004428460.1| tRNA (uracil-5-)-methyltransferase [Alteromonas macleodii str. 'Deep ecotype'] gi|332142856|ref|YP_004428594.1| tRNA (uracil-5-)-methyltransferase [Alteromonas macleodii str. 'Deep ecotype'] gi|327552744|gb|AEA99462.1| tRNA (uracil-5-)-methyltransferase [Alteromonas macleodii str. 'Deep ecotype'] gi|327552878|gb|AEA99596.1| tRNA (uracil-5-)-methyltransferase [Alteromonas macleodii str. 'Deep ecotype'] Length = 365 Score = 419 bits (1078), Expect = e-115, Method: Compositional matrix adjust. Identities = 189/357 (52%), Positives = 258/357 (72%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTK 68 +Y+ QL EKVDRL ++ F P ++ S+P HYRMRAEF +WH+GDDL+HIMFDQ+TK Sbjct: 8 RYQAQLDEKVDRLSALLSPFNAPKTSVYPSQPTHYRMRAEFRVWHEGDDLFHIMFDQETK 67 Query: 69 ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLD 128 E+ R+D F P IN M +++ IR +LR KLFQIDYL++ S + +++L+YHR LD Sbjct: 68 EKYRVDSFPPACKTINDAMEKLLNEIRPNEILRKKLFQIDYLSALSGELVISLLYHRQLD 127 Query: 129 DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFT 188 D W A L+ L ++ +IGRA K K +D D+V ERL V G +++ IENSFT Sbjct: 128 DEWEAAAKSLKSTLETHFPKVNIIGRARKQKRIIDNDFVIERLPVKGNEFVFKHIENSFT 187 Query: 189 QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248 QPNA +N M+EW L K + GDLLE+YCG GNFSL LA HFD V+ EIAKPSV+AA+ Sbjct: 188 QPNAEVNCKMIEWALDCVKPLSGDLLEMYCGAGNFSLPLALHFDNVVGTEIAKPSVQAAQ 247 Query: 249 YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDAT 308 +NI N ++NVKIVR++++EFTQAM+ +R F+RL+ ID+ Y F T+ VDPPR+GLD+ + Sbjct: 248 FNIEQNRLHNVKIVRLAAEEFTQAMKGKRTFSRLEGIDLSEYNFTTVLVDPPRAGLDEDS 307 Query: 309 VGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 + M+Q Y +I+YISCNP++L ++L +LS TH + + ALFDQFP+T H+E GVLL RK Sbjct: 308 LRMIQDYDNIVYISCNPETLAQNLELLSETHDVAQSALFDQFPFTHHIEAGVLLTRK 364 >gi|223041752|ref|ZP_03611945.1| tRNA (uracil-5-)-methyltransferase [Actinobacillus minor 202] gi|223017436|gb|EEF15854.1| tRNA (uracil-5-)-methyltransferase [Actinobacillus minor 202] Length = 369 Score = 419 bits (1078), Expect = e-115, Method: Compositional matrix adjust. Identities = 200/366 (54%), Positives = 265/366 (72%), Gaps = 5/366 (1%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDD-----LY 59 L +QY LA+KV L ++ FQ P L++F S+P H+RMRAEF +WHD ++ LY Sbjct: 3 LATEQYADLLAKKVANLTALLSPFQAPELEVFASKPQHFRMRAEFRVWHDKNEKGENELY 62 Query: 60 HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119 HIMFD +TK+R R+D F + LIN +M ++A I+ LL KLFQIDYL++ S + V Sbjct: 63 HIMFDPETKQRYRVDQFPIANELINKMMKSLLAEIQGSELLTRKLFQIDYLSTLSGEIAV 122 Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179 +L+YH+ L++ W E A L+ L + +++QLIGRA K KI LD DYV+E L + G+ + Sbjct: 123 SLLYHKALNEEWVEQAQLLKQRLTEQGFRVQLIGRATKQKIALDHDYVEEVLPIHGKNYV 182 Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEI 239 YRQ+ENSFTQPNA IN+ MLEW + T+ QGDLLELYCGNGNFS+ LA +F +VLA EI Sbjct: 183 YRQVENSFTQPNAEINIKMLEWARSCTQNSQGDLLELYCGNGNFSIALAENFRKVLATEI 242 Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299 +K SV++A+YNI N ++N++I+RMS++EFTQAM REFNRLK ID+ SY TIFVDP Sbjct: 243 SKSSVQSAQYNIEQNGIDNLQIIRMSAEEFTQAMNGVREFNRLKGIDLKSYDCNTIFVDP 302 Query: 300 PRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359 PR+GLD T+ MVQ Y ILYISCNP++L +L LS TH IER ALFDQFP+T H+E G Sbjct: 303 PRAGLDPDTLNMVQDYERILYISCNPNTLAENLQQLSQTHRIERAALFDQFPFTHHIESG 362 Query: 360 VLLVRK 365 V L+++ Sbjct: 363 VWLIKR 368 >gi|304412674|ref|ZP_07394278.1| tRNA (uracil-5-)-methyltransferase [Shewanella baltica OS183] gi|307307284|ref|ZP_07587021.1| tRNA (uracil-5-)-methyltransferase [Shewanella baltica BA175] gi|304349018|gb|EFM13432.1| tRNA (uracil-5-)-methyltransferase [Shewanella baltica OS183] gi|306910339|gb|EFN40771.1| tRNA (uracil-5-)-methyltransferase [Shewanella baltica BA175] gi|315265533|gb|ADT92386.1| tRNA (uracil-5-)-methyltransferase [Shewanella baltica OS678] Length = 383 Score = 419 bits (1077), Expect = e-115, Method: Compositional matrix adjust. Identities = 192/356 (53%), Positives = 265/356 (74%), Gaps = 1/356 (0%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69 Y+ QL K +L Q F+ P++++F SEP +YRMRAEF +WHDGDDLY+ MFD+ E Sbjct: 29 YDTQLEHKRIKLEQAFAQFETPSVEVFASEPANYRMRAEFRMWHDGDDLYYYMFDKVLNE 88 Query: 70 RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDD 129 ++R D ++P S+LIN +M ++A ++ P LR KLFQ+D+L++ S + +V+L+YHR LDD Sbjct: 89 KVRCDQYLPASVLINQMMSALIAELKPNPSLRHKLFQVDFLSTLSGEILVSLLYHRQLDD 148 Query: 130 AWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQ 189 WR A L+ L + ++ + +IGRA K KI LD+D+V E L V +T +Y+QIENSFTQ Sbjct: 149 QWRADATALKAKLSS-QFNVNIIGRARKQKIDLDKDFVVESLQVNDKTFLYKQIENSFTQ 207 Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249 PNA ++V MLEW + AT+ QGDLLELYCGNGNFS+ LA++F+RVLA E+AKPSV+AA+Y Sbjct: 208 PNAKVSVKMLEWAIDATQNSQGDLLELYCGNGNFSIALAQNFNRVLATELAKPSVDAAQY 267 Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309 NI N + N++I+RMS+++F+ AM ++R F RL+ ID+ SY TIFVDPPR+G+D T+ Sbjct: 268 NIEVNGIENLQIIRMSAEDFSDAMAKKRSFRRLEGIDLDSYVCNTIFVDPPRAGIDPDTL 327 Query: 310 GMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 +VQ Y ILYISCNP++L +L L+ TH + R ALFDQFPYT HME GVLL R+ Sbjct: 328 ALVQGYERILYISCNPETLKDNLQQLNETHKVTRFALFDQFPYTDHMETGVLLERR 383 >gi|91228523|ref|ZP_01262444.1| tRNA (uracil-5-)-methyltransferase [Vibrio alginolyticus 12G01] gi|91187899|gb|EAS74210.1| tRNA (uracil-5-)-methyltransferase [Vibrio alginolyticus 12G01] Length = 369 Score = 419 bits (1077), Expect = e-115, Method: Compositional matrix adjust. Identities = 197/358 (55%), Positives = 265/358 (74%), Gaps = 2/358 (0%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTK 68 +Y++QLAEKV+RL M + +P L++F S HYRMRAEF +WH+G+DLY+IMF+Q+T+ Sbjct: 10 RYQEQLAEKVERLTDMFAPYNMPELEVFESPEQHYRMRAEFRVWHEGEDLYYIMFNQETR 69 Query: 69 ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLD 128 E+ R+D F S LIN LM ++ ++ LR KLFQ+D+L++ S + +V+L+YHR LD Sbjct: 70 EKYRVDQFPAASRLINDLMPLLVEAMKDNDSLRRKLFQVDFLSTLSGEILVSLLYHRQLD 129 Query: 129 DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFT 188 + W E A L+ L+ + + +IGRA K KI LDRDYV E+L V G++ IY+Q+ENSFT Sbjct: 130 EEWIENAKALKQRLNDEGFNLNIIGRARKMKIVLDRDYVIEKLDVNGQSYIYQQVENSFT 189 Query: 189 QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248 QPN + MLEW + T+ GDLLELYCGNGNFSL LA++FDRVLA E+AKPSV +A+ Sbjct: 190 QPNGKVAEKMLEWAVDCTQESTGDLLELYCGNGNFSLALAQNFDRVLATELAKPSVVSAQ 249 Query: 249 YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGLDD 306 YNIAAN ++NV+I+R+S++EFTQA+ +REF RL+D +D+ SY TIFVDPPR+G+D Sbjct: 250 YNIAANKIDNVQILRLSAEEFTQAIEGKREFRRLQDAGVDLESYNCNTIFVDPPRAGMDV 309 Query: 307 ATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 T MVQ Y I+YISCNP++L +L IL TH + R ALFDQFPYT HME GV+L R Sbjct: 310 DTCKMVQGYERIMYISCNPETLKENLDILCETHNVTRFALFDQFPYTHHMEAGVMLER 367 >gi|152998729|ref|YP_001364410.1| tRNA (uracil-5-)-methyltransferase [Shewanella baltica OS185] gi|171704511|sp|A6WHQ8|TRMA_SHEB8 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|151363347|gb|ABS06347.1| tRNA (uracil-5-)-methyltransferase [Shewanella baltica OS185] Length = 365 Score = 419 bits (1076), Expect = e-115, Method: Compositional matrix adjust. Identities = 191/356 (53%), Positives = 266/356 (74%), Gaps = 1/356 (0%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69 Y+ QL K +L Q F+ P++++F SEP +YRMRAEF +WHDGDDLY+ MFD+ E Sbjct: 11 YDTQLEHKRIKLEQAFAQFETPSVEVFASEPANYRMRAEFRMWHDGDDLYYYMFDKVLNE 70 Query: 70 RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDD 129 ++R D ++P S+LIN +M ++A ++ P LR KLFQ+D+L++ S + +V+L+YHR LDD Sbjct: 71 KVRCDQYLPASVLINQMMSALIAELKPNPSLRHKLFQVDFLSTLSGEILVSLLYHRQLDD 130 Query: 130 AWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQ 189 WR A L+ L + ++ + +IGRA K KI LD+D+V E L V +T +Y+QIENSFTQ Sbjct: 131 QWRADAAALKTKLSS-QFNVNIIGRARKQKIDLDKDFVVESLQVNDKTFLYKQIENSFTQ 189 Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249 PNA ++V MLEW + AT+ +GDLLELYCGNGNFS+ LA++F+RVLA E+AKPSV+AA+Y Sbjct: 190 PNAKVSVKMLEWAIDATQDSEGDLLELYCGNGNFSIALAQNFNRVLATELAKPSVDAAQY 249 Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309 NI N + N++I+RMS+++F+ AM ++R F RL+ ID+ SY TIFVDPPR+G+D T+ Sbjct: 250 NIEVNGIENLQIIRMSAEDFSDAMAKKRSFRRLEGIDLDSYVCNTIFVDPPRAGIDPDTL 309 Query: 310 GMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 +VQ Y ILYISCNP++L +L +L+ TH + R ALFDQFPYT HME GVLL R+ Sbjct: 310 ALVQGYERILYISCNPETLKDNLQLLNETHKVTRFALFDQFPYTEHMETGVLLERR 365 >gi|149911328|ref|ZP_01899948.1| tRNA (uracil-5-)-methyltransferase [Moritella sp. PE36] gi|149805568|gb|EDM65571.1| tRNA (uracil-5-)-methyltransferase [Moritella sp. PE36] Length = 365 Score = 419 bits (1076), Expect = e-115, Method: Compositional matrix adjust. Identities = 196/360 (54%), Positives = 268/360 (74%), Gaps = 3/360 (0%) Query: 8 DQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQT 67 D Y+ QL +K R R++ F P L++F S +YR+RAEF +WHDGDDLY+IMFD++T Sbjct: 7 DNYQSQLDDKAARQREIFKKFSPPELEVFDSPAENYRLRAEFRVWHDGDDLYYIMFDKET 66 Query: 68 KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLL 127 K++++IDYF+PGS LIN +M ++ ++ LLR KLFQ+D+L++ S + +V+L+YHR L Sbjct: 67 KQKIKIDYFLPGSKLINEIMPALLFELKKSNLLRFKLFQVDFLSTLSGELLVSLLYHRQL 126 Query: 128 DDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSF 187 D W A L++ L + + I +IGRA K K+ LDR++V E L VAG+ L Y+Q+ENSF Sbjct: 127 SDEWITEAKALKEKL-SEHFNIDIIGRARKQKVVLDREFVVEELNVAGKKLKYKQVENSF 185 Query: 188 TQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA 247 TQPN +N MLEW L TK GDLLELYCGNGNFS+ LA +F++VLA EI+K SV++A Sbjct: 186 TQPNGIVNQKMLEWSLDVTKNCSGDLLELYCGNGNFSIALAPNFEKVLATEISKSSVQSA 245 Query: 248 RYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK--DIDIHSYRFKTIFVDPPRSGLD 305 +YNIA N ++N+ I+R+S++EFT A+ EREFNRLK ++D+ ++ TIFVDPPR+GLD Sbjct: 246 QYNIAENGLDNLTILRLSAEEFTIAINGEREFNRLKAANVDLTTFNCNTIFVDPPRAGLD 305 Query: 306 DATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 TV MVQ Y +I+YISC+P++L +L LS THTIER ALFDQFPYT H+E GV LV+K Sbjct: 306 ADTVKMVQGYDNIVYISCSPETLSDNLEALSQTHTIERFALFDQFPYTHHVESGVYLVKK 365 >gi|240948863|ref|ZP_04753219.1| tRNA (uracil-5-)-methyltransferase [Actinobacillus minor NM305] gi|240296678|gb|EER47289.1| tRNA (uracil-5-)-methyltransferase [Actinobacillus minor NM305] Length = 369 Score = 419 bits (1076), Expect = e-115, Method: Compositional matrix adjust. Identities = 200/366 (54%), Positives = 265/366 (72%), Gaps = 5/366 (1%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDD-----LY 59 L +QY LA+KV L ++ FQ P L++F S+P H+RMRAEF +WHD ++ LY Sbjct: 3 LATEQYADLLAKKVANLTALLSPFQAPELEVFASKPQHFRMRAEFRVWHDKNEKGENELY 62 Query: 60 HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119 HIMFD +TK+R R+D F + LIN +M ++A I+ LL KLFQIDYL++ S + V Sbjct: 63 HIMFDPETKQRYRVDQFPIANELINKMMQSLLAEIQGNELLTRKLFQIDYLSTLSGEIAV 122 Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179 +L+YH+ L++ W E A L+ L + ++IQLIGRA K KI LD DYV+E L + G+ + Sbjct: 123 SLLYHKALNEEWVEQAKLLKHRLTEQGFRIQLIGRATKQKIALDYDYVEEVLPIHGKNYV 182 Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEI 239 YRQ+ENSFTQPNA +N+ MLEW + T+ QGDLLELYCGNGNFS+ LA +F +VLA EI Sbjct: 183 YRQVENSFTQPNAEMNIKMLEWARSCTQNSQGDLLELYCGNGNFSIALAENFRKVLATEI 242 Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299 +K SV++A+YNI N ++N++I+RMS++EFTQAM REFNRLK ID+ SY TIFVDP Sbjct: 243 SKSSVQSAQYNIEQNGIDNLQIIRMSAEEFTQAMNGVREFNRLKGIDLKSYDCNTIFVDP 302 Query: 300 PRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359 PR+GLD T+ MVQ Y ILYISCNP++L +L LS TH IER ALFDQFP+T H+E G Sbjct: 303 PRAGLDPDTLNMVQGYERILYISCNPNTLAENLQQLSQTHRIERAALFDQFPFTHHIESG 362 Query: 360 VLLVRK 365 V L+++ Sbjct: 363 VWLIKR 368 >gi|126176363|ref|YP_001052512.1| tRNA (uracil-5-)-methyltransferase [Shewanella baltica OS155] gi|160873306|ref|YP_001552622.1| tRNA (uracil-5-)-methyltransferase [Shewanella baltica OS195] gi|217975221|ref|YP_002359972.1| tRNA (uracil-5-)-methyltransferase [Shewanella baltica OS223] gi|171769982|sp|A3DA80|TRMA_SHEB5 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|189036045|sp|A9KW82|TRMA_SHEB9 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|254789080|sp|B8EBM5|TRMA_SHEB2 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|125999568|gb|ABN63643.1| tRNA (uracil-5-)-methyltransferase [Shewanella baltica OS155] gi|160858828|gb|ABX47362.1| tRNA (uracil-5-)-methyltransferase [Shewanella baltica OS195] gi|217500356|gb|ACK48549.1| tRNA (uracil-5-)-methyltransferase [Shewanella baltica OS223] Length = 365 Score = 419 bits (1076), Expect = e-115, Method: Compositional matrix adjust. Identities = 192/356 (53%), Positives = 265/356 (74%), Gaps = 1/356 (0%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69 Y+ QL K +L Q F+ P++++F SEP +YRMRAEF +WHDGDDLY+ MFD+ E Sbjct: 11 YDTQLEHKRIKLEQAFAQFETPSVEVFASEPANYRMRAEFRMWHDGDDLYYYMFDKVLNE 70 Query: 70 RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDD 129 ++R D ++P S+LIN +M ++A ++ P LR KLFQ+D+L++ S + +V+L+YHR LDD Sbjct: 71 KVRCDQYLPASVLINQMMSALIAELKPNPSLRHKLFQVDFLSTLSGEILVSLLYHRQLDD 130 Query: 130 AWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQ 189 WR A L+ L + ++ + +IGRA K KI LD+D+V E L V +T +Y+QIENSFTQ Sbjct: 131 QWRADATALKAKLSS-QFNVNIIGRARKQKIDLDKDFVVESLQVNDKTFLYKQIENSFTQ 189 Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249 PNA ++V MLEW + AT+ QGDLLELYCGNGNFS+ LA++F+RVLA E+AKPSV+AA+Y Sbjct: 190 PNAKVSVKMLEWAIDATQNSQGDLLELYCGNGNFSIALAQNFNRVLATELAKPSVDAAQY 249 Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309 NI N + N++I+RMS+++F+ AM ++R F RL+ ID+ SY TIFVDPPR+G+D T+ Sbjct: 250 NIEVNGIENLQIIRMSAEDFSDAMAKKRSFRRLEGIDLDSYVCNTIFVDPPRAGIDPDTL 309 Query: 310 GMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 +VQ Y ILYISCNP++L +L L+ TH + R ALFDQFPYT HME GVLL R+ Sbjct: 310 ALVQGYERILYISCNPETLKDNLQQLNETHKVTRFALFDQFPYTDHMETGVLLERR 365 >gi|119944400|ref|YP_942080.1| tRNA (uracil-5-)-methyltransferase [Psychromonas ingrahamii 37] gi|262827937|sp|A1SSL6|TRMA_PSYIN RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|119863004|gb|ABM02481.1| tRNA (uracil-5-)-methyltransferase [Psychromonas ingrahamii 37] Length = 365 Score = 418 bits (1075), Expect = e-115, Method: Compositional matrix adjust. Identities = 201/358 (56%), Positives = 259/358 (72%), Gaps = 1/358 (0%) Query: 8 DQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQT 67 + YE LA K + L + F P L+ F S +HYRMRAE +WHDGD+LY+IMFD++T Sbjct: 9 ENYETLLAAKKEHLNKQFAIFNPPALECFASPKLHYRMRAELRVWHDGDELYYIMFDKKT 68 Query: 68 KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLL 127 K++ R++ F P S LIN LM ++ ++ +LR KLFQID+L++ Q IV+L+YH+ L Sbjct: 69 KQKFRVEQFPPASELINNLMPVLLELVKSSEILRYKLFQIDFLSNLKGQVIVSLLYHKQL 128 Query: 128 DDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSF 187 DD W A R++ L +++ I IGRA K KI LD DYV E L V G L Y+QIENSF Sbjct: 129 DDNWLVEAKRIKAEL-LKQFDINFIGRARKQKILLDYDYVIEELQVDGNKLFYQQIENSF 187 Query: 188 TQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA 247 TQPNA + MLEW + T+ QGDLLELYCGNGNFSL LA++F++VLA EIAKPSVE+A Sbjct: 188 TQPNAKVCEKMLEWAIDCTRDSQGDLLELYCGNGNFSLALAKNFNKVLATEIAKPSVESA 247 Query: 248 RYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307 ++N+A N +NNV ++RMS++EFTQA+ EREF RLK+I + Y+ TI VDPPRSGLDD Sbjct: 248 QFNMAQNGINNVTVIRMSAEEFTQAINGEREFYRLKEITLSDYQCNTILVDPPRSGLDDE 307 Query: 308 TVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 TV MVQ Y +ILYISCN D+L R+L +LS TH I+R ALFDQFPYT H E GV LV++ Sbjct: 308 TVKMVQHYDNILYISCNADTLSRNLEVLSKTHEIKRFALFDQFPYTYHSEAGVYLVKR 365 >gi|322515262|ref|ZP_08068260.1| tRNA (uracil-5-)-methyltransferase [Actinobacillus ureae ATCC 25976] gi|322118767|gb|EFX90973.1| tRNA (uracil-5-)-methyltransferase [Actinobacillus ureae ATCC 25976] Length = 368 Score = 418 bits (1075), Expect = e-115, Method: Compositional matrix adjust. Identities = 199/367 (54%), Positives = 263/367 (71%), Gaps = 5/367 (1%) Query: 4 TLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDD-----L 58 L I+QY LA+K + L +++ F P L++F+SE H+RMRAEF +WHD ++ L Sbjct: 2 NLPIEQYSDLLAKKAENLTALLVPFNPPALEVFQSETSHFRMRAEFRVWHDTNEAGENEL 61 Query: 59 YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAI 118 YHIMFDQ+TK+R R+D F + LIN +M ++ I+ LL KLFQ+DYL++ S + Sbjct: 62 YHIMFDQETKQRYRVDQFPIANHLINNMMSTLLTEIKGNELLTRKLFQVDYLSTLSGEIA 121 Query: 119 VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTL 178 V+++YH+ L++ W+ A L+ L + +Q+IGRA K KI L+RDYV+E L V G L Sbjct: 122 VSMLYHKKLNEEWQAEAAALKKRLENHGFNVQIIGRATKQKIALERDYVEEVLPVDGHNL 181 Query: 179 IYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVE 238 IYRQ+ENSFTQPNA +N+ MLEW + T+ GDLLELYCGNGNFS+ LA +F +VLA E Sbjct: 182 IYRQVENSFTQPNAKMNIKMLEWARSCTQNSTGDLLELYCGNGNFSIALAENFRQVLATE 241 Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298 I+K SV +A+YNI N +NN++I+RMS++EFTQAM REFNRLK ID+ +Y TIFVD Sbjct: 242 ISKSSVHSAQYNIEQNRINNLQIIRMSAEEFTQAMNGVREFNRLKGIDLKAYDCNTIFVD 301 Query: 299 PPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMEC 358 PPR+GLD T+ MVQAY ILYISCNP +L +L L+ TH IER ALFDQFPYT H+E Sbjct: 302 PPRAGLDQDTLNMVQAYERILYISCNPHTLADNLQQLTQTHRIERAALFDQFPYTHHVES 361 Query: 359 GVLLVRK 365 GV L+RK Sbjct: 362 GVWLIRK 368 >gi|163803389|ref|ZP_02197264.1| tRNA (uracil-5-)-methyltransferase [Vibrio sp. AND4] gi|159172793|gb|EDP57638.1| tRNA (uracil-5-)-methyltransferase [Vibrio sp. AND4] Length = 369 Score = 418 bits (1074), Expect = e-115, Method: Compositional matrix adjust. Identities = 196/359 (54%), Positives = 266/359 (74%), Gaps = 2/359 (0%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTK 68 +Y++QLAEKV+RL M ++VP L++F S HYRMRAEF +WH+G+DLY+IMF+Q+T+ Sbjct: 10 RYQEQLAEKVERLNNMFAPYKVPELEVFESPEQHYRMRAEFRVWHEGEDLYYIMFNQETR 69 Query: 69 ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLD 128 E+ R+D F S LIN LM ++ ++ LR KLFQ+D+L++ S + +V+L+YHR LD Sbjct: 70 EKYRVDQFPAASRLINDLMPLLVDAMKDNESLRRKLFQVDFLSTLSGEILVSLLYHRQLD 129 Query: 129 DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFT 188 + W E A L+ L+ + + +IGRA K KI LDRD+V E+L V G++ Y+Q+ENSFT Sbjct: 130 EQWIENARALKQRLNDEGFNLNIIGRARKMKIVLDRDFVIEKLDVNGQSYTYQQVENSFT 189 Query: 189 QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248 QPN + MLEW + T+ GDLLELYCGNGNFSL LA++FDRVLA E+AKPSV +A+ Sbjct: 190 QPNGKVAEKMLEWAVDCTQESTGDLLELYCGNGNFSLALAQNFDRVLATELAKPSVVSAQ 249 Query: 249 YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGLDD 306 YNIAAN ++NV+I+R+S++EFTQA+ +REF RL++ +D+ SY TIFVDPPR+G+D Sbjct: 250 YNIAANEIDNVQILRLSAEEFTQAIEGKREFRRLQEAGVDLKSYNCNTIFVDPPRAGMDV 309 Query: 307 ATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 T MVQ Y I+YISCNP++L +L +L TH + R ALFDQFPYT HME GVLL RK Sbjct: 310 DTCKMVQGYERIMYISCNPETLKENLDMLCETHKVTRFALFDQFPYTHHMEAGVLLERK 368 >gi|126209433|ref|YP_001054658.1| tRNA (uracil-5-)-methyltransferase [Actinobacillus pleuropneumoniae L20] gi|166988114|sp|A3N3R7|TRMA_ACTP2 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|126098225|gb|ABN75053.1| tRNA (uracil-5-)-methyltransferase [Actinobacillus pleuropneumoniae serovar 5b str. L20] Length = 368 Score = 417 bits (1073), Expect = e-114, Method: Compositional matrix adjust. Identities = 201/367 (54%), Positives = 264/367 (71%), Gaps = 5/367 (1%) Query: 4 TLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDD-----L 58 L I+QY LAEK L ++ F P L++F SE H+RMRAEF +WHD ++ L Sbjct: 2 NLPIEQYADLLAEKAKNLTALLAPFNPPELEVFESETGHFRMRAEFRVWHDTNEVGENEL 61 Query: 59 YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAI 118 YHIMFDQ+TK+R ++ F + LIN +M ++A I+ LL KLFQ+DYL++ S + Sbjct: 62 YHIMFDQETKQRYCVEQFPIANHLINKMMSSLLAEIKGNELLTRKLFQVDYLSTLSGEIA 121 Query: 119 VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTL 178 V+++YH+ L++ W+ A L+ L + +++Q+IGRA K KI LDRDYV+E L V GR L Sbjct: 122 VSMLYHKKLNEEWQAEAAALKARLEHQGFKVQIIGRATKQKIALDRDYVEEVLPVDGRNL 181 Query: 179 IYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVE 238 IYRQ+ENSFTQPNA +N+ MLEW + T+ GDLLELYCGNGNFS+ LA +F +VLA E Sbjct: 182 IYRQVENSFTQPNAKMNIKMLEWARSCTRHSSGDLLELYCGNGNFSIALAENFRKVLATE 241 Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298 I+K SV++A+YNI N ++N++I+RMS++EFTQAM REFNRLK ID+ +Y TIFVD Sbjct: 242 ISKSSVQSAQYNIEQNGIDNLQIIRMSAEEFTQAMNGVREFNRLKGIDLKAYDCNTIFVD 301 Query: 299 PPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMEC 358 PPR+GLD T+ MVQAY ILYISCNP +L +L LS TH IER ALFDQFPYT H+E Sbjct: 302 PPRAGLDQDTLNMVQAYERILYISCNPYTLAENLRQLSLTHRIERAALFDQFPYTHHVES 361 Query: 359 GVLLVRK 365 GV L+RK Sbjct: 362 GVWLIRK 368 >gi|120600466|ref|YP_965040.1| tRNA (uracil-5-)-methyltransferase [Shewanella sp. W3-18-1] gi|262827710|sp|A1RP91|TRMA_SHESW RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|120560559|gb|ABM26486.1| tRNA (uracil-5-)-methyltransferase [Shewanella sp. W3-18-1] Length = 365 Score = 417 bits (1072), Expect = e-114, Method: Compositional matrix adjust. Identities = 193/356 (54%), Positives = 263/356 (73%), Gaps = 1/356 (0%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69 Y+ QL K +L Q F+ P++++F SEP +YRMRAEF +WHDGDDLY+ MFD+ E Sbjct: 11 YDAQLEHKRIKLEQAFAQFETPSVEVFASEPANYRMRAEFRMWHDGDDLYYYMFDKVLNE 70 Query: 70 RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDD 129 ++R D ++P S+LIN +M ++A ++ P LR KLFQ+D+L++ S + +V+L+YHR LDD Sbjct: 71 KVRCDQYLPASVLINQMMSALIAELKPNPSLRHKLFQVDFLSTLSGEILVSLLYHRQLDD 130 Query: 130 AWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQ 189 WR A L+ L + ++ + +IGRA K KI LD+D+V E L V +T +Y+QIENSFTQ Sbjct: 131 QWRTNAAALKAKLSS-QFNVNIIGRARKQKIDLDKDFVVESLQVNDKTFLYKQIENSFTQ 189 Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249 PNA + V MLEW + T+ QGDLLELYCGNGNFS+ LA++F+RVLA E+AKPSVEAA+Y Sbjct: 190 PNAKVAVKMLEWAIDVTQDSQGDLLELYCGNGNFSIALAQNFNRVLATELAKPSVEAAQY 249 Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309 NI AN + N++I+RMS+++F+ AM ++R F RL+ ID+ SY TIFVDPPR+G+D T+ Sbjct: 250 NIEANGIKNLQIIRMSAEDFSDAMAKKRSFRRLEGIDLDSYVCNTIFVDPPRAGIDPDTL 309 Query: 310 GMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 +VQ Y ILYISCNPD+L +L L TH + + ALFDQFPYT HME GVLL R+ Sbjct: 310 ALVQGYERILYISCNPDTLKDNLEQLYKTHRVTQFALFDQFPYTDHMETGVLLERR 365 >gi|91791600|ref|YP_561251.1| tRNA (uracil-5-)-methyltransferase [Shewanella denitrificans OS217] gi|123061360|sp|Q12SP8|TRMA_SHEDO RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|91713602|gb|ABE53528.1| tRNA (uracil-5-)-methyltransferase [Shewanella denitrificans OS217] Length = 365 Score = 417 bits (1071), Expect = e-114, Method: Compositional matrix adjust. Identities = 193/356 (54%), Positives = 266/356 (74%), Gaps = 1/356 (0%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69 Y+ QLAEK +L + F P L++F SEP HYRMRAEF +WH+GDDLY+ MFD+ Sbjct: 11 YDAQLAEKKRKLSEGFAEFAPPELEVFASEPAHYRMRAEFRVWHEGDDLYYYMFDKVLDA 70 Query: 70 RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDD 129 ++R + ++P S LINA+M ++ +R LR +LFQ+D+L++ S + +V+L+YHR LD+ Sbjct: 71 KVRCEQYLPASTLINAIMTSLVEELRPNHSLRHRLFQVDFLSTLSGEILVSLLYHRQLDE 130 Query: 130 AWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQ 189 W+ A L+ L + ++ + +IGRA K KI LD+D+V E + V G+ L Y+QIENSFTQ Sbjct: 131 QWQVEAAALKQRLSS-QFNVNIIGRARKQKIDLDKDFVVETIKVNGQDLHYKQIENSFTQ 189 Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249 PNA +++ MLEW + ATK QGDLLELYCGNGNF++ LA++F+RVLA E+AKPSV AA+Y Sbjct: 190 PNAKVSIKMLEWAIDATKQSQGDLLELYCGNGNFTIALAQNFNRVLATELAKPSVGAAQY 249 Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309 NIA N+V+NV+I+RMS+++F+ AM ++R F RL+ ID+ SY TIFVDPPR+G+DD T+ Sbjct: 250 NIAINNVDNVQIIRMSAEDFSDAMAKKRSFRRLEGIDLDSYNCNTIFVDPPRAGIDDETL 309 Query: 310 GMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 ++Q Y ILYISCNP++L +L LS++H I R ALFDQFPYT HME GVLL RK Sbjct: 310 KLIQGYERILYISCNPETLKDNLQTLSSSHKITRFALFDQFPYTHHMESGVLLERK 365 >gi|170729029|ref|YP_001763055.1| tRNA (uracil-5-)-methyltransferase [Shewanella woodyi ATCC 51908] gi|226705993|sp|B1KN03|TRMA_SHEWM RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|169814376|gb|ACA88960.1| tRNA (uracil-5-)-methyltransferase [Shewanella woodyi ATCC 51908] Length = 365 Score = 417 bits (1071), Expect = e-114, Method: Compositional matrix adjust. Identities = 194/358 (54%), Positives = 258/358 (72%), Gaps = 1/358 (0%) Query: 8 DQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQT 67 + Y+ QL EK +L + F PNL++F SE HYRMRAEF IWHDG+D+Y+ MFD+ Sbjct: 9 NTYDAQLEEKRIKLENIFTDFDTPNLEVFSSEQAHYRMRAEFRIWHDGEDMYYYMFDKAL 68 Query: 68 KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLL 127 ++R D F+P S LIN +M ++A ++ PLLR +LFQID+L++ S + +V+L+YH+ L Sbjct: 69 NSKVRCDQFLPASKLINEMMPALIAELKPNPLLRHRLFQIDFLSTLSGEILVSLLYHKQL 128 Query: 128 DDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSF 187 D+ W A L++ L A K+ + +IGRA K K+ D+D+V E L V G L Y QIENSF Sbjct: 129 DEQWETEAKSLKERL-ASKFNVNIIGRARKQKLIFDKDFVVESLQVNGEQLQYHQIENSF 187 Query: 188 TQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA 247 TQPN ++V MLEW + TK GDLLELYCGNGNFS+ LA++FDRVLA E+AKPSVE+A Sbjct: 188 TQPNGKVSVKMLEWAIDVTKNSSGDLLELYCGNGNFSIALAQNFDRVLATELAKPSVESA 247 Query: 248 RYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307 +YNI N ++N++I+RMS+++FT AM ++R F RL+ ID+ SY TIFVDPPR+G+D Sbjct: 248 QYNIKINKIDNLQIIRMSAEDFTDAMAKKRSFRRLEGIDLDSYNCNTIFVDPPRAGMDPD 307 Query: 308 TVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 TV +VQ Y I+YISCNP++L +L LS TH I R ALFDQFPYT HME GV L RK Sbjct: 308 TVKLVQGYERIVYISCNPNTLIDNLVELSKTHKITRFALFDQFPYTDHMESGVFLERK 365 >gi|146294594|ref|YP_001185018.1| tRNA (uracil-5-)-methyltransferase [Shewanella putrefaciens CN-32] gi|172046872|sp|A4YB86|TRMA_SHEPC RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|145566284|gb|ABP77219.1| tRNA (uracil-5-)-methyltransferase [Shewanella putrefaciens CN-32] Length = 366 Score = 417 bits (1071), Expect = e-114, Method: Compositional matrix adjust. Identities = 193/355 (54%), Positives = 262/355 (73%), Gaps = 1/355 (0%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69 Y+ QL K +L Q F+ P++++F SEP +YRMRAEF +WHDGDDLY+ MFD+ E Sbjct: 11 YDAQLEHKRIKLEQAFAQFETPSVEVFASEPANYRMRAEFRMWHDGDDLYYYMFDKVLNE 70 Query: 70 RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDD 129 ++R D ++P S+LIN +M ++A ++ P LR KLFQ+D+L++ S + +V+L+YHR LDD Sbjct: 71 KVRCDQYLPASVLINQMMSALIAELKPNPSLRHKLFQVDFLSTLSGEILVSLLYHRQLDD 130 Query: 130 AWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQ 189 WR A L+ L + ++ + +IGRA K KI LD+D+V E L V +T +Y+QIENSFTQ Sbjct: 131 QWRTNAAALKAKLSS-QFNVNIIGRARKQKIDLDKDFVVESLQVNDKTFLYKQIENSFTQ 189 Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249 PNA + V MLEW + T+ QGDLLELYCGNGNFS+ LA++F+RVLA E+AKPSVEAA+Y Sbjct: 190 PNAKVAVKMLEWAIDVTQDSQGDLLELYCGNGNFSIALAQNFNRVLATELAKPSVEAAQY 249 Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309 NI AN + N++I+RMS+++F+ AM ++R F RL+ ID+ SY TIFVDPPR+G+D T+ Sbjct: 250 NIEANGIKNLQIIRMSAEDFSDAMAKKRSFRRLEGIDLDSYVCNTIFVDPPRAGIDPDTL 309 Query: 310 GMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 +VQ Y ILYISCNPD+L +L L TH + + ALFDQFPYT HME GVLL R Sbjct: 310 ALVQGYERILYISCNPDTLKDNLEQLYKTHRVTQFALFDQFPYTDHMETGVLLER 364 >gi|332991663|gb|AEF01718.1| tRNA (uracil-5-)-methyltransferase [Alteromonas sp. SN2] Length = 364 Score = 416 bits (1070), Expect = e-114, Method: Compositional matrix adjust. Identities = 191/362 (52%), Positives = 258/362 (71%) Query: 4 TLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63 T Y+ QL EKVDRL ++ F P+L ++ S+P +YRMRAEF +WHDGDDLYHIMF Sbjct: 3 TTTAKDYQAQLDEKVDRLGTLLTPFNAPSLSVYPSKPENYRMRAEFRVWHDGDDLYHIMF 62 Query: 64 DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIY 123 DQ +KE+ R+D F P S IN+ M +++ ++ LLR KLFQIDYLT S + +++L+Y Sbjct: 63 DQGSKEKYRVDTFPPASETINSAMQQLIEYLKPNELLRKKLFQIDYLTGLSGELVISLLY 122 Query: 124 HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQI 183 H+ LDD W A LR L + + +IGRA K K + D++ ERL + GR ++ I Sbjct: 123 HKPLDDEWEVQAELLRTFLATQFTAVSIIGRARKQKRIVGNDFIIERLPINGREFEFKHI 182 Query: 184 ENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 ENSFTQPNA +N M+EW L + + GDLLE+YCG GNFS+ LA HFD V+ EIAKPS Sbjct: 183 ENSFTQPNAEVNCSMIEWSLECSAPLTGDLLEMYCGAGNFSMPLAVHFDNVIGTEIAKPS 242 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 V+AA+YNIAANH++NVKIVR+S++EFT+AM ER F+RL+ I++ Y F T+ VDPPR+G Sbjct: 243 VQAAQYNIAANHLDNVKIVRLSAEEFTEAMNGERTFSRLEGINLTEYNFTTVLVDPPRAG 302 Query: 304 LDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363 LD ++ M+Q Y +I+YISCNP++L +LS+L TH + ALFDQFP+T H+E GVLL Sbjct: 303 LDVDSLKMIQGYDNIIYISCNPETLAENLSLLCETHEVANAALFDQFPFTHHIEAGVLLT 362 Query: 364 RK 365 +K Sbjct: 363 KK 364 >gi|213612916|ref|ZP_03370742.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 451 Score = 415 bits (1066), Expect = e-114, Method: Compositional matrix adjust. Identities = 198/304 (65%), Positives = 239/304 (78%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L +QYE QLAEKV RL+ MM F ++FRS HYRMRAEF +WHDGD+LYHIMFD Sbjct: 8 LPTEQYEAQLAEKVARLQSMMAPFSGLVPEVFRSPVSHYRMRAEFRLWHDGDNLYHIMFD 67 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTK R+R+D F S LIN LM M+A +R LR KLFQIDYLT+ S+QA+V+L+YH Sbjct: 68 QQTKSRIRVDTFPAASQLINTLMKAMIAGVRDNHALRHKLFQIDYLTTLSNQAVVSLLYH 127 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + LD+ WRE A LRDAL A+ + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E Sbjct: 128 KKLDEEWREAATALRDALRAQGLNVHLIGRATKTKIELDQDYIDERLPVAGKEIIYRQVE 187 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+ MLEW L TK +GDLLELYCGNGNFSL LAR+F+RVLA EIAKPSV Sbjct: 188 NSFTQPNAAMNIQMLEWALEVTKDSKGDLLELYCGNGNFSLALARNFNRVLATEIAKPSV 247 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAANH++NV+I+RM+++EFTQAM REFNRL+ ID+ Y+ +TIFVDPPRSGL Sbjct: 248 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKRYQCETIFVDPPRSGL 307 Query: 305 DDAT 308 D T Sbjct: 308 DSET 311 >gi|157377468|ref|YP_001476068.1| tRNA (uracil-5-)-methyltransferase [Shewanella sediminis HAW-EB3] gi|189036048|sp|A8G1G7|TRMA_SHESH RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|157319842|gb|ABV38940.1| tRNA (uracil-5-)-methyltransferase [Shewanella sediminis HAW-EB3] Length = 365 Score = 415 bits (1066), Expect = e-114, Method: Compositional matrix adjust. Identities = 195/358 (54%), Positives = 258/358 (72%), Gaps = 1/358 (0%) Query: 8 DQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQT 67 + Y+ QL EK +L Q+ F P L++F SEP HYRMRAEF IWHDG+D+Y+ MFD+ Sbjct: 9 NTYDAQLEEKRIKLEQIFTDFDTPKLEVFSSEPAHYRMRAEFRIWHDGEDMYYYMFDKAL 68 Query: 68 KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLL 127 ++R D F+P S LIN +M +M +R P LR +LFQID+L++ S + +V+L+YH+ L Sbjct: 69 DSKVRCDQFLPASELINKVMPALMEELRPNPTLRHRLFQIDFLSTLSGEILVSLLYHKQL 128 Query: 128 DDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSF 187 D W A L++ L A + I +IGRA K K+ +D+D+V E LTV L Y QIENSF Sbjct: 129 DAQWEIEAKALKEKLAA-TFNINIIGRARKQKLIIDKDFVIESLTVNNEQLQYHQIENSF 187 Query: 188 TQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA 247 TQPN ++V MLEW + TK QGDLLELYCGNGNFS+ LA++FDRVLA E+AKPSVE+A Sbjct: 188 TQPNGKVSVKMLEWAIDVTKNSQGDLLELYCGNGNFSIALAQNFDRVLATELAKPSVESA 247 Query: 248 RYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307 +YNI N ++N++I+RMS+++FT AM ++R F RL+ ID+ SY TIFVDPPR+G+D Sbjct: 248 QYNIKINKIDNLQIIRMSAEDFTDAMAKKRTFRRLEGIDLDSYNCNTIFVDPPRAGMDPD 307 Query: 308 TVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 TV +VQ Y I+YISCNP++L +L+ LS TH I R ALFDQFPYT HME GV L R+ Sbjct: 308 TVKLVQGYDRIVYISCNPNTLIDNLAELSKTHKITRFALFDQFPYTDHMESGVFLERR 365 >gi|24371805|ref|NP_715847.1| tRNA (uracil-5-)-methyltransferase [Shewanella oneidensis MR-1] gi|50401568|sp|Q8CX51|TRMA_SHEON RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|24345607|gb|AAN53292.1|AE015470_5 tRNA (uracil-5-)-methyltransferase [Shewanella oneidensis MR-1] Length = 366 Score = 415 bits (1066), Expect = e-114, Method: Compositional matrix adjust. Identities = 191/355 (53%), Positives = 262/355 (73%), Gaps = 1/355 (0%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69 Y+ QL K +L Q F+ P++++F S+P HYRMRAEF +WH+GDDLY+ MFD+ + Sbjct: 11 YDAQLEAKRIKLEQAFAQFETPSIEVFASDPEHYRMRAEFRVWHEGDDLYYYMFDKALND 70 Query: 70 RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDD 129 ++R D ++P S LIN +M ++A ++ P LR KLFQ+D+L++ S + +V+L+YHR LDD Sbjct: 71 KVRCDQYLPASTLINEMMAALIAELKPNPSLRHKLFQVDFLSTLSGEILVSLLYHRQLDD 130 Query: 130 AWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQ 189 WR AI L+ L + ++++ +IGRA K KI LD+D+V E L V + Y+QIENSFTQ Sbjct: 131 QWRAEAIALKAKLSS-QFKVNIIGRARKQKIDLDKDFVVESLQVNDKVFHYKQIENSFTQ 189 Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249 PNA + + MLEW + T+ QGDLLELYCGNGNFS+ LA++F+RVLA E+AKPSV+AA+Y Sbjct: 190 PNAKVAIKMLEWAIDVTQNSQGDLLELYCGNGNFSIALAQNFNRVLATELAKPSVDAAQY 249 Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309 NI N ++N++I+RMS++EF+ AM ++R F RL+ ID+ SY TIFVDPPR+G+D AT+ Sbjct: 250 NIEINGIDNLQIIRMSAEEFSDAMAKKRSFRRLEGIDLDSYLCNTIFVDPPRAGIDPATL 309 Query: 310 GMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 +VQ Y ILYISCNPD+L +L L TH + R ALFDQFPYT HME GVLL R Sbjct: 310 DLVQGYERILYISCNPDTLKDNLQQLYKTHKVTRFALFDQFPYTDHMETGVLLER 364 >gi|119472791|ref|ZP_01614728.1| tRNA (uracil-5-)-methyltransferase [Alteromonadales bacterium TW-7] gi|119444750|gb|EAW26055.1| tRNA (uracil-5-)-methyltransferase [Alteromonadales bacterium TW-7] Length = 365 Score = 414 bits (1064), Expect = e-113, Method: Compositional matrix adjust. Identities = 198/358 (55%), Positives = 262/358 (73%), Gaps = 3/358 (0%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTK 68 QY+ QL+EK R+ F V L++F SEPI+YR RAEF +WHDGDDL+HIMFDQQTK Sbjct: 10 QYQAQLSEKEQRITSQFQRFGVEQLEVFSSEPINYRQRAEFRVWHDGDDLFHIMFDQQTK 69 Query: 69 ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLD 128 E++R+D F P + L+ +M M+ ++ +LR KLFQIDYL++ S + +V+L+YH+ LD Sbjct: 70 EKIRVDTFDPAAPLVGEIMQVMIENLKPCEVLRRKLFQIDYLSTLSGEILVSLLYHKPLD 129 Query: 129 DAW-RECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSF 187 D W RE I+ A + KY+I IGRA K K L D+V E+LTV G+ LIY+Q+ENSF Sbjct: 130 DEWLRE--IKSLKAKLSEKYKIDFIGRARKQKEVLGDDFVTEQLTVNGQELIYQQVENSF 187 Query: 188 TQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA 247 TQPNA +N+ MLEW K ++ DLLELYCGNGNFS+ LA F++VLA EI+K SV +A Sbjct: 188 TQPNAKVNISMLEWAQDLCKPLKNDLLELYCGNGNFSIALAGSFNKVLATEISKSSVHSA 247 Query: 248 RYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307 +YNIA N+V+N+ I+RMSS+EFTQAM ER F+RL ID+ SY +TI VDPPR+G+D+ Sbjct: 248 QYNIAKNNVDNLDIIRMSSEEFTQAMNGERTFSRLDGIDLKSYDCQTILVDPPRAGMDEL 307 Query: 308 TVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 T +V Y +I+YISCNPD+L RDL L+ +H ++R A+FDQFPYT H+E GV L RK Sbjct: 308 TCDLVANYENIIYISCNPDTLERDLDHLTRSHNVKRFAIFDQFPYTHHIESGVFLQRK 365 >gi|157959994|ref|YP_001500028.1| tRNA (uracil-5-)-methyltransferase [Shewanella pealeana ATCC 700345] gi|189036047|sp|A8GYV6|TRMA_SHEPA RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|157844994|gb|ABV85493.1| tRNA (uracil-5-)-methyltransferase [Shewanella pealeana ATCC 700345] Length = 365 Score = 414 bits (1064), Expect = e-113, Method: Compositional matrix adjust. Identities = 191/356 (53%), Positives = 258/356 (72%), Gaps = 1/356 (0%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69 Y+ QL K +L+Q+ F P L+ F SEP HYRMRAEF +WH+G+DLY+ MFD++ Sbjct: 11 YDVQLEAKCVKLKQLFADFDTPELETFSSEPAHYRMRAEFRVWHEGEDLYYYMFDKELNS 70 Query: 70 RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDD 129 ++R D F+P S LIN +M ++ ++ +LR +LFQID+L++ S + +V+L+YH+ LD Sbjct: 71 KVRCDQFLPASELINKMMPALVELLKPNTILRHRLFQIDFLSTLSGEILVSLLYHKQLDS 130 Query: 130 AWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQ 189 W + A L+ L + ++ + LIGRA K KI D+D+V E L VAG+ L Y QIENSFTQ Sbjct: 131 EWEQQAKILKQTL-STQFNVNLIGRARKQKIIFDKDFVVESLNVAGKQLQYHQIENSFTQ 189 Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249 PN ++V MLEW + TK GDLLELYCGNGNFS+ LA++F+RVLA E+AKPSVE+A+Y Sbjct: 190 PNGKVSVKMLEWAIDITKNSSGDLLELYCGNGNFSIALAQNFERVLATELAKPSVESAQY 249 Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309 NI N V N++I+RMS+++FT+AM ++R F RL+ ID+ SY TIFVDPPR+GLD TV Sbjct: 250 NIKVNQVENLQIIRMSAEDFTEAMAKKRSFRRLEGIDLDSYNCNTIFVDPPRAGLDADTV 309 Query: 310 GMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 +VQ Y I+YISCNP++L +L+ LS TH I R ALFDQFPYT HME GV L +K Sbjct: 310 KLVQGYERIVYISCNPNTLIDNLAELSKTHKITRFALFDQFPYTDHMESGVFLEKK 365 >gi|332304646|ref|YP_004432497.1| tRNA (uracil-5-)-methyltransferase [Glaciecola agarilytica 4H-3-7+YE-5] gi|332171975|gb|AEE21229.1| tRNA (uracil-5-)-methyltransferase [Glaciecola agarilytica 4H-3-7+YE-5] Length = 365 Score = 413 bits (1062), Expect = e-113, Method: Compositional matrix adjust. Identities = 189/356 (53%), Positives = 265/356 (74%), Gaps = 1/356 (0%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69 Y++QLA+KVD + Q AF +PN+++F S ++YRMRAEF IWHDGD+L H+MFDQ TK+ Sbjct: 11 YDKQLAQKVDSVEQSFAAFSMPNVEVFTSAALNYRMRAEFRIWHDGDNLDHVMFDQATKQ 70 Query: 70 RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDD 129 + ++ F P S++IN +M++++ ++ +LR KLFQIDYL++ +D+ +VTL+YH+ L++ Sbjct: 71 KYSVNQFPPASVVINKVMVKLVPLLKDNEVLRRKLFQIDYLSTLTDEVLVTLVYHKPLEE 130 Query: 130 AWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQ 189 W A LR L +++I LIGRA K K+ LD+DYV E L V R ++QIENSFTQ Sbjct: 131 EWLIEATALRTVLR-EEFKIDLIGRAKKQKVLLDKDYVLEALPVNERIYTFKQIENSFTQ 189 Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249 PNAG+N MLEW L T+ +GDLLELYCG GNFSL LA++F +VLA EI+K SV AA++ Sbjct: 190 PNAGVNSKMLEWALDVTQDCEGDLLELYCGAGNFSLPLAQNFKQVLATEISKSSVAAAQH 249 Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309 NI N+++NV I+RMSS+EF QA+ ER F RL+ +++ Y +T+ VDPPRSGLDD T+ Sbjct: 250 NIRLNNIDNVTILRMSSEEFVQALNNERSFRRLEGVNLQKYNCQTVLVDPPRSGLDDETL 309 Query: 310 GMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 MVQ Y +I+YISCNP++L +L++LS TH + R ALFDQFP+T H+E GV L ++ Sbjct: 310 AMVQGYANIVYISCNPETLKDNLAVLSETHDVVRFALFDQFPFTHHVESGVFLQKR 365 >gi|149192330|ref|ZP_01870537.1| tRNA (uracil-5-)-methyltransferase [Vibrio shilonii AK1] gi|148833841|gb|EDL50871.1| tRNA (uracil-5-)-methyltransferase [Vibrio shilonii AK1] Length = 369 Score = 413 bits (1061), Expect = e-113, Method: Compositional matrix adjust. Identities = 196/358 (54%), Positives = 264/358 (73%), Gaps = 2/358 (0%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69 Y+ QL EK RL MM + P L++F S HYRMRAEF +WH+G+D+Y+IMF+Q+T+E Sbjct: 11 YQIQLEEKSQRLIDMMAPYSAPELEVFTSPEKHYRMRAEFRVWHEGEDMYYIMFNQETRE 70 Query: 70 RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDD 129 + R+D F S LIN LM +M ++ +LR KLFQ+D+L++ S + +V+L+YHR LDD Sbjct: 71 KYRVDQFPAASRLINDLMPLLMDAMKGNDVLRKKLFQVDFLSTLSGEILVSLLYHRQLDD 130 Query: 130 AWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQ 189 AW+ A L+ L+ +++ LIGRA K KI LD+DYV E L V G+ Y+Q+ENSFTQ Sbjct: 131 AWKAEAKALKQRLNDEGFKLNLIGRARKMKIVLDQDYVLETLHVNGQPYHYQQVENSFTQ 190 Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249 PN + MLEW + T+ +GDLLELYCGNGNFSL LA++F+RVLA E+AKPSV++A++ Sbjct: 191 PNGPVAQKMLEWAVDCTQESKGDLLELYCGNGNFSLALAQNFERVLATELAKPSVDSAQF 250 Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRL--KDIDIHSYRFKTIFVDPPRSGLDDA 307 NIA N ++NV+I+RMS++EFT+AM +REF RL +++D+ SY TIFVDPPR+G+D Sbjct: 251 NIAENKIDNVQIIRMSAEEFTEAMEGKREFRRLQQQNVDLKSYNCNTIFVDPPRAGMDID 310 Query: 308 TVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 T MVQ Y ILYISCNP++L +L +LS THTI R ALFDQFP+T H+E GVLL RK Sbjct: 311 TCKMVQGYQRILYISCNPETLKDNLDVLSETHTITRFALFDQFPFTHHIEAGVLLERK 368 >gi|114045686|ref|YP_736236.1| tRNA (uracil-5-)-methyltransferase [Shewanella sp. MR-7] gi|122945065|sp|Q0I0C6|TRMA_SHESR RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|113887128|gb|ABI41179.1| tRNA (uracil-5-)-methyltransferase [Shewanella sp. MR-7] Length = 365 Score = 412 bits (1059), Expect = e-113, Method: Compositional matrix adjust. Identities = 190/356 (53%), Positives = 263/356 (73%), Gaps = 1/356 (0%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69 Y+ QL K +L Q F+ P++++F SEP HYRMRAEF +WH+GDDLY+ MFD+ + Sbjct: 11 YDAQLTAKRIKLEQAFAQFETPSVEVFASEPAHYRMRAEFRVWHEGDDLYYYMFDKVLND 70 Query: 70 RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDD 129 ++R D ++P S LIN +M ++A ++ LR KLFQ+D+L++ S + +V+L+YHR LDD Sbjct: 71 KVRCDQYLPASALINQMMAALIAELKPNHSLRHKLFQVDFLSTLSGEILVSLLYHRQLDD 130 Query: 130 AWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQ 189 WR A L+ L + ++++ +IGRA K KI LD+D+V E L V + Y+QIENSFTQ Sbjct: 131 QWRSEAAALKARLSS-QFKVNIIGRARKQKIDLDKDFVVESLQVNDKVFHYKQIENSFTQ 189 Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249 PNA + + MLEW + T+ QGDLLELYCGNGNFS+ LA++F+RVLA E+AKPSV+AA+Y Sbjct: 190 PNAKVAIKMLEWAIDVTQNSQGDLLELYCGNGNFSIALAQNFNRVLATELAKPSVDAAQY 249 Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309 NI N+++N++I+RMS++EF+ AM ++R F RL+ ID+ SY TIFVDPPR+G+D AT+ Sbjct: 250 NIEVNNIDNLQIIRMSAEEFSDAMAKKRSFRRLEGIDLDSYVCNTIFVDPPRAGIDPATL 309 Query: 310 GMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 +VQ Y ILYISCNPD+L +L L+ TH + R ALFDQFPYT HME GVLL R+ Sbjct: 310 ELVQGYERILYISCNPDTLKDNLQQLNQTHKVTRFALFDQFPYTDHMETGVLLERR 365 >gi|113968523|ref|YP_732316.1| tRNA (uracil-5-)-methyltransferase [Shewanella sp. MR-4] gi|123325499|sp|Q0HNV8|TRMA_SHESM RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|113883207|gb|ABI37259.1| tRNA (uracil-5-)-methyltransferase [Shewanella sp. MR-4] Length = 365 Score = 412 bits (1058), Expect = e-113, Method: Compositional matrix adjust. Identities = 191/356 (53%), Positives = 263/356 (73%), Gaps = 1/356 (0%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69 Y+ QL K +L Q F+ P++++F SEP HYRMRAEF IWH+GDDLY+ MFD+ + Sbjct: 11 YDAQLTAKRIKLEQAFAQFETPSVEVFASEPAHYRMRAEFRIWHEGDDLYYYMFDKVLND 70 Query: 70 RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDD 129 ++R D ++P S LIN +M ++A ++ LR KLFQ+D+L++ S + +V+L+YHR LDD Sbjct: 71 KVRCDQYLPASALINQMMAALIAELKPNHSLRHKLFQVDFLSTLSGEILVSLLYHRQLDD 130 Query: 130 AWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQ 189 WR A L+ L + ++++ +IGRA K KI LD+D+V E L V + Y+QIENSFTQ Sbjct: 131 QWRSEAAALKARLSS-QFKVNIIGRARKQKIDLDKDFVVESLQVNDKVFHYKQIENSFTQ 189 Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249 PNA + + MLEW + T+ QGDLLELYCGNGNFS+ LA++F+RVLA E+AKPSV+AA+Y Sbjct: 190 PNAKVAIKMLEWAIDVTQHSQGDLLELYCGNGNFSIALAQNFNRVLATELAKPSVDAAQY 249 Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309 NI N+++N++I+RMS++EF+ AM ++R F RL+ ID+ SY TIFVDPPR+G+D AT+ Sbjct: 250 NIEVNNIDNLQIIRMSAEEFSDAMAKKRSFRRLEGIDLDSYVCNTIFVDPPRAGIDPATL 309 Query: 310 GMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 +VQ Y ILYISCNPD+L +L L+ TH + R ALFDQFPYT HME GVLL R+ Sbjct: 310 ELVQGYERILYISCNPDTLKDNLQQLNQTHKVTRFALFDQFPYTDHMETGVLLERR 365 >gi|167626059|ref|YP_001676353.1| tRNA (uracil-5-)-methyltransferase [Shewanella halifaxensis HAW-EB4] gi|189036046|sp|B0TMV6|TRMA_SHEHH RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|167356081|gb|ABZ78694.1| tRNA (uracil-5-)-methyltransferase [Shewanella halifaxensis HAW-EB4] Length = 365 Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust. Identities = 191/356 (53%), Positives = 256/356 (71%), Gaps = 1/356 (0%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69 Y+ QL K +L Q+ F P L+ F SEP HYRMRAEF +WH+G+DLY+ MFD++ Sbjct: 11 YDVQLETKRVKLTQLFADFDTPELETFSSEPAHYRMRAEFRVWHEGEDLYYYMFDKELNS 70 Query: 70 RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDD 129 ++R D F+P S LIN +M ++ ++ +LR +LFQID+L++ S + +V+L+YH+ LD Sbjct: 71 KVRCDQFLPASELINKMMPALVELLKPNTILRHRLFQIDFLSTLSGEILVSLLYHKQLDS 130 Query: 130 AWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQ 189 W + A L+ L + ++ + LIGRA K KI D+D+V E L VAG+ L Y QIENSFTQ Sbjct: 131 EWEQQAKILKQTL-STQFNVNLIGRARKQKIIFDKDFVVESLNVAGKQLQYHQIENSFTQ 189 Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249 PN ++V MLEW + TK GDLLELYCGNGNFS+ LA++FDRVLA E+AKPSVE+A+Y Sbjct: 190 PNGKVSVKMLEWAIDVTKNSTGDLLELYCGNGNFSIALAQNFDRVLATELAKPSVESAQY 249 Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309 NI N V N++I+RMS+++FT+AM ++R F RL+ ID+ SY TIFVDPPR+GLD TV Sbjct: 250 NIKVNQVENLQIIRMSAEDFTEAMAKKRSFRRLEGIDLDSYNCNTIFVDPPRAGLDADTV 309 Query: 310 GMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 +VQ Y I+YISCNP +L +L+ LS TH I R ALFDQFPYT HME GV L ++ Sbjct: 310 KLVQGYERIVYISCNPHTLLDNLAELSKTHKITRFALFDQFPYTDHMESGVFLEKR 365 >gi|332535185|ref|ZP_08410992.1| tRNA (uracil54-C5-)-methyltransferase [Pseudoalteromonas haloplanktis ANT/505] gi|332035404|gb|EGI71904.1| tRNA (uracil54-C5-)-methyltransferase [Pseudoalteromonas haloplanktis ANT/505] Length = 365 Score = 410 bits (1054), Expect = e-112, Method: Compositional matrix adjust. Identities = 195/357 (54%), Positives = 258/357 (72%), Gaps = 1/357 (0%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTK 68 QY+ QL+EK R+ F V L++F SEP +YR RAEF +WHDGDDL+HIMFDQQTK Sbjct: 10 QYQAQLSEKEQRISTQFQRFGVEQLEVFSSEPTNYRQRAEFRVWHDGDDLFHIMFDQQTK 69 Query: 69 ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLD 128 E++R+D F P + L+ +M M+ ++ +LR KLFQIDYL++ S + +V+L+YH+ LD Sbjct: 70 EKIRVDTFDPAAPLVGEIMQVMIENLKPCEILRRKLFQIDYLSTLSGEILVSLLYHKPLD 129 Query: 129 DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFT 188 D W L++ L + KY+I IGRA K K L D+V ERLT+ G+ LIY+Q+ENSFT Sbjct: 130 DEWLSEIKALKEKLSS-KYKIDFIGRARKQKEVLGDDFVTERLTINGQELIYQQVENSFT 188 Query: 189 QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248 QPNA +N++MLEW K ++ DLLELYCGNGNFS+ LA F++VLA EI+K SV +A+ Sbjct: 189 QPNAKVNINMLEWAQDLCKPLKNDLLELYCGNGNFSIALAGCFNKVLATEISKSSVHSAQ 248 Query: 249 YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDAT 308 YNIA N+V N+ I+RMSS+EFTQAM ER F+RL ID+ SY +TI VDPPR+G+D T Sbjct: 249 YNIAKNNVENLDIIRMSSEEFTQAMNGERTFSRLDGIDLKSYDCQTILVDPPRAGMDALT 308 Query: 309 VGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 +V Y I+YISCNP++L RDL L+ TH ++R A+FDQFPYT H+E GV L RK Sbjct: 309 CDLVANYESIIYISCNPETLERDLDHLTRTHNVKRFAIFDQFPYTHHIESGVFLQRK 365 >gi|33151895|ref|NP_873248.1| tRNA (uracil-5-)-methyltransferase [Haemophilus ducreyi 35000HP] gi|50401509|sp|Q7U339|TRMA_HAEDU RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|33148116|gb|AAP95637.1| tRNA (uracil-5-)-methyltransferase [Haemophilus ducreyi 35000HP] Length = 369 Score = 410 bits (1054), Expect = e-112, Method: Compositional matrix adjust. Identities = 200/368 (54%), Positives = 262/368 (71%), Gaps = 6/368 (1%) Query: 4 TLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGD-----DL 58 +L I+QY + LA+KVD L ++ F P IF SE H+RMRAEF +WH + DL Sbjct: 2 SLPIEQYPELLAQKVDNLTALLAPFNPPPFDIFASETSHFRMRAEFRVWHQKNEQGENDL 61 Query: 59 YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAI 118 YHIMFD TK+R R+D + LIN +M +++ I+ P+L KLFQ+DYLT+ S + Sbjct: 62 YHIMFDPTTKQRYRVDQLPIANQLINTMMQKLLTQIQGIPVLTHKLFQVDYLTTLSGEIA 121 Query: 119 VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTL 178 ++L+YH+ L D W A L+ L + +IGRA+K KI +D DYV E+L VAG+TL Sbjct: 122 ISLLYHKKLTDEWLAQAKLLKQRLSEPGLTVHIIGRASKQKIAIDCDYVKEKLNVAGKTL 181 Query: 179 IYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNFSLVLARHFDRVLAV 237 IYRQ+ENSFTQPNA +N++MLEW T Q DLLELYCGNGNFS+ LA +F +VLA Sbjct: 182 IYRQVENSFTQPNAKMNINMLEWAQKCTANSQDSDLLELYCGNGNFSIALAGNFRKVLAT 241 Query: 238 EIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFV 297 EI K SV +A+YNIA N ++N++I+RMS++EFTQA+ R+FNRL+ ID+ +Y+ TIFV Sbjct: 242 EICKSSVHSAQYNIAQNGIDNLQIIRMSAEEFTQAINGVRQFNRLQGIDLSAYQCNTIFV 301 Query: 298 DPPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHME 357 DPPR+GLD AT+ MVQ YP ILYISCNP +L +L L+TTH IER+ALFDQFPYT H+E Sbjct: 302 DPPRAGLDQATLNMVQNYPRILYISCNPATLADNLRQLTTTHRIERVALFDQFPYTHHIE 361 Query: 358 CGVLLVRK 365 GV L+RK Sbjct: 362 SGVWLIRK 369 >gi|109900328|ref|YP_663583.1| tRNA (uracil-5-)-methyltransferase [Pseudoalteromonas atlantica T6c] gi|123064065|sp|Q15NK9|TRMA_PSEA6 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|109702609|gb|ABG42529.1| tRNA (uracil-5-)-methyltransferase [Pseudoalteromonas atlantica T6c] Length = 365 Score = 409 bits (1051), Expect = e-112, Method: Compositional matrix adjust. Identities = 190/356 (53%), Positives = 265/356 (74%), Gaps = 1/356 (0%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69 YEQQLA+KV+ ++Q F +P L+ F S P++YRMRAEF +WHDGD+L H+MFDQ TK+ Sbjct: 11 YEQQLAQKVNSVQQAFKTFSMPALEAFSSAPLNYRMRAEFRMWHDGDNLDHVMFDQSTKQ 70 Query: 70 RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDD 129 + ++ F P S++IN +M+++++ ++ +LR KLFQIDYL++ +++ +VTL+YH+ L+D Sbjct: 71 KYAVNQFPPASIVINEVMMKLLSLVKKNEVLRRKLFQIDYLSTLTNEILVTLVYHKPLED 130 Query: 130 AWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQ 189 W + A LR AL +++I +IGRA K K+ LD+DYV E L V R ++QIENSFTQ Sbjct: 131 EWLKEAKALR-ALLRDEFKIDIIGRAKKQKVLLDKDYVIETLPVNDRLYTFKQIENSFTQ 189 Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249 PNAG+N MLEW L T+ QGDLLELYCG GNFSL LA++F +VLA EI+K SV AA+ Sbjct: 190 PNAGVNSKMLEWALDVTQDCQGDLLELYCGAGNFSLPLAQNFRQVLATEISKSSVAAAQD 249 Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309 NI N++ NV I+RMSS+EF QA+ ER F RL+ I++ Y +T+ VDPPRSGLDD T+ Sbjct: 250 NIRLNNIENVTILRMSSEEFVQALNNERSFRRLEGINLQDYDCQTVLVDPPRSGLDDDTL 309 Query: 310 GMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 M++ Y +I+YISCNP++L +L++LS TH + R ALFDQFPYT H+E GV L ++ Sbjct: 310 DMIKEYQNIVYISCNPETLNNNLAVLSETHNVVRFALFDQFPYTHHVESGVYLQKR 365 >gi|77359221|ref|YP_338796.1| tRNA (uracil-5-)-methyltransferase [Pseudoalteromonas haloplanktis TAC125] gi|123589634|sp|Q3ILM2|TRMA_PSEHT RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|76874132|emb|CAI85353.1| tRNA (Uracil-5-)-methyltransferase (tRNA(M-5-U54)-methyltransferase) (RUMT) [Pseudoalteromonas haloplanktis TAC125] Length = 367 Score = 409 bits (1050), Expect = e-112, Method: Compositional matrix adjust. Identities = 194/357 (54%), Positives = 259/357 (72%), Gaps = 1/357 (0%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTK 68 QY+ QL+EK R+ F V L++F SEPI+YR RAEF +WHDGDDL+HIMFDQQTK Sbjct: 10 QYDAQLSEKEQRIAAQFQRFGVDKLEVFSSEPINYRQRAEFRVWHDGDDLFHIMFDQQTK 69 Query: 69 ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLD 128 +++R+D F P + L+ +M M+ ++ +LR KLFQIDYL++ S + +V+L+YH+ LD Sbjct: 70 DKIRVDSFDPAAPLVGEVMQVMIDNLKSCEILRRKLFQIDYLSTLSGEILVSLLYHKPLD 129 Query: 129 DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFT 188 + W L++ L + KY+I IGRA K K L DYV ERL V G+ LIY+Q+ENSFT Sbjct: 130 EHWLSEINTLKEKL-SSKYKIDFIGRARKQKEMLGDDYVTERLNVNGQELIYQQVENSFT 188 Query: 189 QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248 QPNA +N+ MLEW K ++ DLLELYCGNGNFS+ LA F++VLA EI+K SV +A+ Sbjct: 189 QPNAKVNIKMLEWAQDLCKPLKNDLLELYCGNGNFSIALAGSFNKVLATEISKSSVHSAQ 248 Query: 249 YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDAT 308 YNIA N V+N+ I+RMSS+EFTQAM ER F+RL+ ID++SY +TI VDPPR+G+D T Sbjct: 249 YNIAQNKVDNLDIIRMSSEEFTQAMNGERSFSRLEGIDLNSYNCQTILVDPPRAGMDTLT 308 Query: 309 VGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 +V Y I+YISCNP++L RDL L+ TH ++R A+FDQFPYT H+E GV L +K Sbjct: 309 CDLVANYESIIYISCNPETLERDLDHLTRTHEVKRFAIFDQFPYTHHIESGVFLQKK 365 >gi|117918637|ref|YP_867829.1| tRNA (uracil-5-)-methyltransferase [Shewanella sp. ANA-3] gi|134035337|sp|A0KRK4|TRMA_SHESA RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|117610969|gb|ABK46423.1| tRNA (uracil-5-)-methyltransferase [Shewanella sp. ANA-3] Length = 365 Score = 409 bits (1050), Expect = e-112, Method: Compositional matrix adjust. Identities = 188/356 (52%), Positives = 262/356 (73%), Gaps = 1/356 (0%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69 Y+ QL K +L Q F+ P++++F SEP HYRMRAEF +WH+GDDLY+ MFD+ + Sbjct: 11 YDAQLTAKRIKLEQAFAQFETPSVEVFASEPAHYRMRAEFRVWHEGDDLYYYMFDKVLND 70 Query: 70 RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDD 129 ++R D ++P S LIN +M ++ ++ LR KLFQ+D+L++ S + +V+L+YHR LDD Sbjct: 71 KVRCDQYLPASALINQMMAALITELKPNHSLRHKLFQVDFLSTLSGEILVSLLYHRQLDD 130 Query: 130 AWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQ 189 WR A L+ L + ++++ +IGRA K KI LD+D+V E L V + Y+QIENSFTQ Sbjct: 131 QWRSEAAALKARLSS-QFKVNIIGRARKQKIDLDKDFVVESLQVNDKVFHYKQIENSFTQ 189 Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249 PNA + + MLEW + T+ QGDLLELYCGNGNFS+ LA++F+RVLA E+AKPSV+AA+Y Sbjct: 190 PNAKVAIKMLEWAIDVTQNSQGDLLELYCGNGNFSIALAQNFNRVLATELAKPSVDAAQY 249 Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309 NI N+++N++I+RMS++EF+ AM ++R F RL+ ID+ SY TIFVDPPR+G+D AT+ Sbjct: 250 NIEVNNIDNLQIIRMSAEEFSDAMAKKRSFRRLEGIDLDSYVCNTIFVDPPRAGIDPATL 309 Query: 310 GMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 +V+ Y ILYISCNPD+L +L L+ TH + R ALFDQFPYT HME GVLL R+ Sbjct: 310 ELVRGYERILYISCNPDTLKDNLQQLNQTHKVTRFALFDQFPYTDHMETGVLLERR 365 >gi|294142953|ref|YP_003558931.1| tRNA (uracil-5-)-methyltransferase [Shewanella violacea DSS12] gi|293329422|dbj|BAJ04153.1| tRNA (uracil-5-)-methyltransferase [Shewanella violacea DSS12] Length = 365 Score = 408 bits (1048), Expect = e-112, Method: Compositional matrix adjust. Identities = 190/356 (53%), Positives = 256/356 (71%), Gaps = 1/356 (0%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69 Y+ QL EK +L Q+ F P L+ F SE +YRMR EF IWHDGDD+Y+ MFD+ Sbjct: 11 YDAQLEEKRIKLEQIFTDFDTPRLETFGSETANYRMRCEFRIWHDGDDMYYYMFDKALDS 70 Query: 70 RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDD 129 ++R D F+P S LIN +M ++ ++ +LR +LFQID+L++ S + +V+L+YH+ LD Sbjct: 71 KVRCDQFLPASSLINEMMPALIEELKPNTILRHRLFQIDFLSTLSGEILVSLLYHKQLDQ 130 Query: 130 AWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQ 189 W A L+D L A K+++ LIGRA K K+ D+D+V E L+V G L Y QIENSFTQ Sbjct: 131 EWEAEAKSLKDRL-ASKFKVNLIGRARKQKLIFDKDFVVETLSVNGEQLHYHQIENSFTQ 189 Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249 PN ++V MLEW + TK GDLLELYCGNGNFS+ LA++FDRVLA E+AKPSV++A+Y Sbjct: 190 PNGKVSVKMLEWAIDVTKNSTGDLLELYCGNGNFSIALAQNFDRVLATELAKPSVQSAQY 249 Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309 NI N+++N++I+RMS+++FT AM ++R F RL+ ID+ SY TIFVDPPR+GLD TV Sbjct: 250 NIEINNIDNLQIIRMSAEDFTDAMAKKRSFRRLEGIDLDSYNCNTIFVDPPRAGLDSNTV 309 Query: 310 GMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 +VQ Y I+YISCNP++L +L+ L+ TH I R ALFDQFPYT HME GV L +K Sbjct: 310 KLVQGYERIVYISCNPNTLIENLTELTKTHKITRFALFDQFPYTDHMESGVFLEKK 365 >gi|219872016|ref|YP_002476391.1| tRNA (uracil-5-)-methyltransferase [Haemophilus parasuis SH0165] gi|254789078|sp|B8F7Z1|TRMA_HAEPS RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|219692220|gb|ACL33443.1| tRNA (uracil-5-)-methyltransferase [Haemophilus parasuis SH0165] Length = 369 Score = 408 bits (1048), Expect = e-112, Method: Compositional matrix adjust. Identities = 200/361 (55%), Positives = 251/361 (69%) Query: 4 TLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63 TL I QY LA+K + L ++ F P L +F S+ H+R+RAEF +WHD DLYHIMF Sbjct: 2 TLPIHQYPALLAKKAENLTALLAPFNAPELDVFASDTSHFRLRAEFRVWHDNGDLYHIMF 61 Query: 64 DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIY 123 DQ TK+R R+D F S LIN +M ++A I+ LL KLFQIDYL++ S Q V+++Y Sbjct: 62 DQATKQRYRVDQFPIASQLINRMMTVLLAEIKGNELLTRKLFQIDYLSTLSGQIAVSMLY 121 Query: 124 HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQI 183 H+ L + W E A L+ L + +QLIGRA K KI LD DYV+E L V G+ YRQ+ Sbjct: 122 HKSLTEEWIEQAKLLKQRLIGYGFDVQLIGRATKQKIALDCDYVEEALNVDGQIYRYRQV 181 Query: 184 ENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 ENSFTQPN +N+ MLEW A T +GDLLELYCGNGNFS+ LA F +VLA EI+K S Sbjct: 182 ENSFTQPNGKMNIKMLEWARACTANSKGDLLELYCGNGNFSIALANQFRKVLATEISKSS 241 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 VE+A+YNIA N V+N++I+RMS++EFT+AM R F RL+ ID+ Y TIFVDPPR G Sbjct: 242 VESAQYNIAVNGVDNLQIIRMSAEEFTEAMNGVRVFYRLRGIDLKQYDCNTIFVDPPRVG 301 Query: 304 LDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363 LD AT+ MVQ Y ILYISCNP +L +L L+ TH IER ALFDQFPYT H+E GV L+ Sbjct: 302 LDQATLEMVQGYEKILYISCNPHTLADNLKQLTQTHRIERCALFDQFPYTEHIESGVWLI 361 Query: 364 R 364 R Sbjct: 362 R 362 >gi|262831394|sp|B8CH56|TRMA_SHEPW RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT Length = 365 Score = 408 bits (1048), Expect = e-112, Method: Compositional matrix adjust. Identities = 189/356 (53%), Positives = 257/356 (72%), Gaps = 1/356 (0%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69 Y+ QL K +L+Q+ F P L+ F SE HYRMRAEF +WH+G+DLY+ MFD++ Sbjct: 11 YDVQLEAKRVKLKQLFTDFDTPELESFSSETAHYRMRAEFRMWHEGEDLYYYMFDKELNS 70 Query: 70 RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDD 129 ++R D F+P S LIN +M ++ ++ +LR +LFQID+L++ S + +V+L+YH+ LD Sbjct: 71 KVRCDQFLPASELINKMMPVLVELLKPNTILRHRLFQIDFLSTLSGEILVSLLYHKQLDA 130 Query: 130 AWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQ 189 W E A L+ L + ++ + LIGRA K K+ D+D+V E L VAG+ L Y QIENSFTQ Sbjct: 131 EWEEQAKILKQTL-SSQFNVNLIGRARKQKLIFDKDFVVESLNVAGKQLQYHQIENSFTQ 189 Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249 PN ++V MLEW + TK GDLLELYCGNGNFS+ LA++F+RVLA E+AKPSVE+A+Y Sbjct: 190 PNGKVSVKMLEWAIDVTKNSTGDLLELYCGNGNFSIALAQNFERVLATELAKPSVESAQY 249 Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309 NI NHV+N++I+RMS+++FT AM ++R + RL+ ID+ SY TIFVDPPR+GLD+ TV Sbjct: 250 NIKMNHVDNLQIIRMSAEDFTDAMAKKRSYRRLEGIDLDSYNCNTIFVDPPRAGLDENTV 309 Query: 310 GMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 +VQ Y I+YISCNP++L +L LS TH I R LFDQFPYT HME GV L +K Sbjct: 310 KLVQGYERIVYISCNPNTLLDNLKELSKTHNITRFVLFDQFPYTDHMESGVFLEKK 365 >gi|212633111|ref|YP_002309636.1| tRNA (uracil-5-)-methyltransferase [Shewanella piezotolerans WP3] gi|212554595|gb|ACJ27049.1| tRNA (uracil-5-)-methyltransferase [Shewanella piezotolerans WP3] Length = 360 Score = 407 bits (1047), Expect = e-111, Method: Compositional matrix adjust. Identities = 189/356 (53%), Positives = 257/356 (72%), Gaps = 1/356 (0%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69 Y+ QL K +L+Q+ F P L+ F SE HYRMRAEF +WH+G+DLY+ MFD++ Sbjct: 6 YDVQLEAKRVKLKQLFTDFDTPELESFSSETAHYRMRAEFRMWHEGEDLYYYMFDKELNS 65 Query: 70 RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDD 129 ++R D F+P S LIN +M ++ ++ +LR +LFQID+L++ S + +V+L+YH+ LD Sbjct: 66 KVRCDQFLPASELINKMMPVLVELLKPNTILRHRLFQIDFLSTLSGEILVSLLYHKQLDA 125 Query: 130 AWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQ 189 W E A L+ L + ++ + LIGRA K K+ D+D+V E L VAG+ L Y QIENSFTQ Sbjct: 126 EWEEQAKILKQTL-SSQFNVNLIGRARKQKLIFDKDFVVESLNVAGKQLQYHQIENSFTQ 184 Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249 PN ++V MLEW + TK GDLLELYCGNGNFS+ LA++F+RVLA E+AKPSVE+A+Y Sbjct: 185 PNGKVSVKMLEWAIDVTKNSTGDLLELYCGNGNFSIALAQNFERVLATELAKPSVESAQY 244 Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309 NI NHV+N++I+RMS+++FT AM ++R + RL+ ID+ SY TIFVDPPR+GLD+ TV Sbjct: 245 NIKMNHVDNLQIIRMSAEDFTDAMAKKRSYRRLEGIDLDSYNCNTIFVDPPRAGLDENTV 304 Query: 310 GMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 +VQ Y I+YISCNP++L +L LS TH I R LFDQFPYT HME GV L +K Sbjct: 305 KLVQGYERIVYISCNPNTLLDNLKELSKTHNITRFVLFDQFPYTDHMESGVFLEKK 360 >gi|319424830|gb|ADV52904.1| tRNA (uracil-5-)-methyltransferase [Shewanella putrefaciens 200] Length = 365 Score = 407 bits (1047), Expect = e-111, Method: Compositional matrix adjust. Identities = 190/356 (53%), Positives = 261/356 (73%), Gaps = 1/356 (0%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69 Y+ QL K +L Q F+ P++++F SEP +YRMRAEF +WHDGDDLY+ MFD+ E Sbjct: 11 YDAQLEAKRIKLEQAFAQFETPSVEVFASEPANYRMRAEFRVWHDGDDLYYYMFDKVLNE 70 Query: 70 RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDD 129 ++R + ++P S+LIN +M ++A ++ LR KLFQ+D+L++ S + +V+L+YHR LDD Sbjct: 71 KVRCNQYLPASVLINQMMSALIAELKPNHSLRHKLFQVDFLSTLSGEILVSLLYHRQLDD 130 Query: 130 AWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQ 189 W A L+ L ++++ +IGRA K KI LD+D+V E L V +T +Y+QIENSFTQ Sbjct: 131 QWLAEANMLKTKL-GHQFKVNIIGRARKQKIDLDKDFVVESLQVNDKTFLYKQIENSFTQ 189 Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249 PNA + V MLEW + T+ QGDLLELYCGNGNFS+ LA++F+RVLA E+AKPSVEAA+Y Sbjct: 190 PNAKVAVKMLEWAIDVTQDSQGDLLELYCGNGNFSIALAQNFNRVLATELAKPSVEAAQY 249 Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309 NI AN + N++I+RMS+++F+ A+ ++R F RL+ ID+ SY TIFVDPPR+G+D T+ Sbjct: 250 NIEANGIKNLQIIRMSAEDFSDAIAKKRSFRRLEGIDLDSYVCNTIFVDPPRAGIDPDTL 309 Query: 310 GMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 +VQ Y ILYISCNPD+L +L L TH + R ALFDQFPYT HME GVLL R+ Sbjct: 310 ALVQGYERILYISCNPDTLKDNLEQLYKTHRVTRFALFDQFPYTDHMETGVLLERR 365 >gi|167856458|ref|ZP_02479177.1| tRNA (uracil-5-)-methyltransferase [Haemophilus parasuis 29755] gi|167852418|gb|EDS23713.1| tRNA (uracil-5-)-methyltransferase [Haemophilus parasuis 29755] Length = 364 Score = 407 bits (1047), Expect = e-111, Method: Compositional matrix adjust. Identities = 200/362 (55%), Positives = 251/362 (69%) Query: 4 TLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63 TL I QY LA+K + L ++ F P L +F S+ H+R+RAEF +WHD DLYHIMF Sbjct: 2 TLPIHQYPALLAKKAENLTALLAPFNAPELDVFASDTSHFRLRAEFRVWHDNGDLYHIMF 61 Query: 64 DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIY 123 DQ TK+R R+D F S LIN +M ++A I+ LL KLFQIDYL++ S Q V+++Y Sbjct: 62 DQATKQRYRVDQFPIASQLINRMMTVLLAEIKDNELLTRKLFQIDYLSTLSGQIAVSMLY 121 Query: 124 HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQI 183 H+ L + W E A L+ L + +QLIGRA K KI LD DYV+E L V G+ YRQ+ Sbjct: 122 HKSLTEEWIEQAKLLKQRLIGYGFDVQLIGRATKQKIALDCDYVEEALNVDGQIYRYRQV 181 Query: 184 ENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 ENSFTQPN +N+ MLEW A T +GDLLELYCGNGNFS+ LA F +VLA EI+K S Sbjct: 182 ENSFTQPNGKMNIKMLEWARACTANSKGDLLELYCGNGNFSIALANQFRKVLATEISKSS 241 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 VE+A+YNIA N V+N++I+RMS++EFT+AM R F RL+ ID+ Y TIFVDPPR G Sbjct: 242 VESAQYNIAVNGVDNLQIIRMSAEEFTEAMNGVRVFYRLRGIDLKQYDCNTIFVDPPRVG 301 Query: 304 LDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363 LD AT+ MVQ Y ILYISCNP +L +L L+ TH IER ALFDQFPYT H+E GV L+ Sbjct: 302 LDQATLEMVQGYERILYISCNPHTLADNLKQLTQTHRIERCALFDQFPYTEHIESGVWLI 361 Query: 364 RK 365 R Sbjct: 362 RN 363 >gi|315125842|ref|YP_004067845.1| tRNA (uracil-5-)-methyltransferase [Pseudoalteromonas sp. SM9913] gi|315014356|gb|ADT67694.1| tRNA (uracil-5-)-methyltransferase [Pseudoalteromonas sp. SM9913] Length = 365 Score = 406 bits (1044), Expect = e-111, Method: Compositional matrix adjust. Identities = 193/357 (54%), Positives = 257/357 (71%), Gaps = 1/357 (0%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTK 68 QY+ QL EK R+ + F V L++F SEPI+YR RAEF +WHDGDDL+HIMFDQQTK Sbjct: 10 QYDAQLNEKEQRITEQFQRFGVKQLEVFSSEPINYRQRAEFRVWHDGDDLFHIMFDQQTK 69 Query: 69 ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLD 128 +++R+D F P + L+ +M M+ ++ +LR KLFQIDYL++ S + +V+L+YH+ LD Sbjct: 70 DKIRVDTFDPAAPLVGEIMQVMIDNLKGCEVLRRKLFQIDYLSTLSGEILVSLLYHKPLD 129 Query: 129 DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFT 188 + W L++ L + +Y+I IGRA K K L D+V ERL V G+ LIY+Q+ENSFT Sbjct: 130 EHWLTEINALKEKL-SSQYKIDFIGRARKQKEKLGDDFVTERLMVNGQELIYQQVENSFT 188 Query: 189 QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248 QPNA +N+ MLEW K + DLLELYCGNGNFS+ LA F++VLA EI+K SV +A+ Sbjct: 189 QPNAKVNIKMLEWAQELCKPLNNDLLELYCGNGNFSIALAGSFNKVLATEISKSSVHSAQ 248 Query: 249 YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDAT 308 YNIA N V N+ I+RMSS+EFTQAM+ ER F+RL ID+ SY +TI VDPPR+G+D T Sbjct: 249 YNIAQNQVTNLDIIRMSSEEFTQAMKGERTFSRLDGIDLSSYNCQTILVDPPRAGMDTLT 308 Query: 309 VGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 +V Y +I+YISCNPD+L RDL L+ TH ++R A+FDQFPYT H+E GV L +K Sbjct: 309 CDLVANYENIIYISCNPDTLERDLEHLTQTHEVKRFAIFDQFPYTHHIESGVFLQKK 365 >gi|163749943|ref|ZP_02157188.1| tRNA (uracil-5-)-methyltransferase [Shewanella benthica KT99] gi|161330457|gb|EDQ01436.1| tRNA (uracil-5-)-methyltransferase [Shewanella benthica KT99] Length = 365 Score = 405 bits (1042), Expect = e-111, Method: Compositional matrix adjust. Identities = 189/356 (53%), Positives = 255/356 (71%), Gaps = 1/356 (0%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69 Y+ QL +K +L Q+ F P L++F SE HYRMR EF IWHDGDD+Y+ MFD+ Sbjct: 11 YDAQLEKKRIKLEQIFTDFDTPRLEVFGSETAHYRMRCEFRIWHDGDDMYYYMFDKALDS 70 Query: 70 RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDD 129 ++R D F+P S LIN +M ++ ++ +LR +LFQID+L++ S + +V+L+YH+ LD Sbjct: 71 KVRCDQFLPASSLINEMMPALIEELKPNTILRHRLFQIDFLSTLSGEILVSLLYHKQLDQ 130 Query: 130 AWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQ 189 W A L++ L +R +++ LIGRA K K+ D+D+V E L V G L Y QIENSFTQ Sbjct: 131 QWEVEAKVLKEKLASR-FKVNLIGRARKQKLIFDKDFVVESLNVNGEQLHYHQIENSFTQ 189 Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249 PN + V MLEW + TK GDLLELYCGNGNFS+ LA++FDRVLA E+AKPSV++A+Y Sbjct: 190 PNGKVAVKMLEWAIDVTKNSTGDLLELYCGNGNFSIALAQNFDRVLATELAKPSVQSAQY 249 Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309 NI N ++N++I+RMS+++FT AM ++R F RL+ ID+ SY TIFVDPPR+GLD TV Sbjct: 250 NIEINKIDNLQIIRMSAEDFTDAMAKKRSFRRLEGIDLDSYNCNTIFVDPPRAGLDSNTV 309 Query: 310 GMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 +VQ Y I+YISCNP++L +L+ L+ TH I R ALFDQFPYT HME GVLL +K Sbjct: 310 KLVQGYERIVYISCNPNTLTENLAELTKTHNITRFALFDQFPYTDHMESGVLLEKK 365 >gi|221135408|ref|ZP_03561711.1| tRNA (uracil-5-)-methyltransferase [Glaciecola sp. HTCC2999] Length = 361 Score = 403 bits (1036), Expect = e-110, Method: Compositional matrix adjust. Identities = 188/359 (52%), Positives = 257/359 (71%), Gaps = 4/359 (1%) Query: 10 YEQQLAEKVDRLRQMMLAFQVP---NLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66 Y QL+EK RL ++ F P N+ I+ S+ HYR RAEF +WHDGDDLYHIMF+Q+ Sbjct: 4 YASQLSEKNARLTSLLSPFTHPSNLNIDIYPSQASHYRQRAEFRVWHDGDDLYHIMFNQE 63 Query: 67 TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL 126 TK++ R+D+F SLLIN +M ++ I+ P+LR KLFQIDYL++ ++Q +V+++YH+ Sbjct: 64 TKQQYRVDHFPVASLLINQVMDALITRIKTIPILRDKLFQIDYLSATTNQIVVSMLYHKK 123 Query: 127 LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS 186 L D W E L + ++ YQIQ IGRA K K ++ DYV E+L++ G+ ++ IENS Sbjct: 124 LSDEWVEKINELHTEM-SKTYQIQFIGRAKKQKTIINHDYVIEKLSIHGKEYTFKHIENS 182 Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246 FTQPNA +N HM+EWV + T+ I GDLLELYCG GNF++ L+ +FD V+A EI+K SV A Sbjct: 183 FTQPNAEVNCHMIEWVASHTQSIAGDLLELYCGAGNFTIPLSDYFDNVMATEISKTSVNA 242 Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306 A+ NIA N + N I+RMSS+EF A +ER + RL+ ID+ SY F T+ VDPPR+GLD Sbjct: 243 AQDNIAYNDIQNCTILRMSSEEFVSAKNKERAYRRLEGIDLDSYDFTTVLVDPPRAGLDM 302 Query: 307 ATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 AT+ M+ Y +I+YISCNPD+L +L L+ THTIER ALFDQFP+T H+E GV+L R+ Sbjct: 303 ATINMINQYEYIIYISCNPDTLAHNLQELTKTHTIERAALFDQFPFTHHIESGVILKRR 361 >gi|254229783|ref|ZP_04923190.1| tRNA (uracil-5-)-methyltransferase [Vibrio sp. Ex25] gi|151937682|gb|EDN56533.1| tRNA (uracil-5-)-methyltransferase [Vibrio sp. Ex25] Length = 337 Score = 399 bits (1024), Expect = e-109, Method: Compositional matrix adjust. Identities = 188/335 (56%), Positives = 249/335 (74%), Gaps = 2/335 (0%) Query: 33 LQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMA 92 L++F S HYRMRAEF +WH+G+DLY+IMF+Q+T+E+ R+D F S LIN LM ++ Sbjct: 2 LEVFESPEQHYRMRAEFRVWHEGEDLYYIMFNQETREKYRVDQFPAASRLINDLMPLLVE 61 Query: 93 TIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLI 152 ++ LR KLFQ+D+L++ S + +V+L+YHR LD+ W E A L+ L+ + + +I Sbjct: 62 AMKDNDSLRRKLFQVDFLSTLSGEILVSLLYHRQLDEEWIENAKALKQRLNDEGFNLNII 121 Query: 153 GRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD 212 GRA K KI LDRDYV E+L V G++ IY+Q+ENSFTQPN + MLEW + T+ GD Sbjct: 122 GRARKMKIVLDRDYVIEKLDVNGQSYIYQQVENSFTQPNGKVAEKMLEWAVDCTQESTGD 181 Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 LLELYCGNGNFSL LA++FDRVLA E+AKPSV +A+YNIAAN ++NV+I+R+S++EFTQA Sbjct: 182 LLELYCGNGNFSLALAQNFDRVLATELAKPSVVSAQYNIAANKIDNVQILRLSAEEFTQA 241 Query: 273 MRREREFNRLKD--IDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYISCNPDSLCR 330 + +REF RL+D +D+ SY TIFVDPPR+G+D T MVQ Y I+YISCNP++L Sbjct: 242 IEGKREFRRLQDAGVDLKSYNCNTIFVDPPRAGMDADTCKMVQGYERIMYISCNPETLKE 301 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 +L IL TH + R ALFDQFPYT HME GVLL RK Sbjct: 302 NLDILCETHNVTRFALFDQFPYTHHMEAGVLLERK 336 >gi|229517004|ref|ZP_04406450.1| tRNA (uracil-5-)-methyltransferase [Vibrio cholerae RC9] gi|229346067|gb|EEO11039.1| tRNA (uracil-5-)-methyltransferase [Vibrio cholerae RC9] Length = 372 Score = 390 bits (1002), Expect = e-106, Method: Compositional matrix adjust. Identities = 182/333 (54%), Positives = 246/333 (73%), Gaps = 2/333 (0%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69 Y+ QLA+K+ RL+ M + + +P L++F S +YRMRAEF IWH+GDD+Y+IMF+Q+T+E Sbjct: 11 YQAQLADKIARLKAMFVDYSMPELEVFESPVANYRMRAEFRIWHEGDDMYYIMFNQETRE 70 Query: 70 RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDD 129 + R+D F S LIN LM +M ++ P+LR KLFQ+D+L++ S + +V+L+YHR L + Sbjct: 71 KYRVDQFPAASRLINDLMPLLMDAMKGSPILRHKLFQVDFLSTLSGEILVSLLYHRQLSE 130 Query: 130 AWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQ 189 W A L+ L+ + + LIGRA K K+ LDRDYV E L V G+ +Y+Q+ENSFTQ Sbjct: 131 EWITAAQALKQRLNDEGFNLNLIGRARKMKVVLDRDYVVENLQVNGQPYVYKQVENSFTQ 190 Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249 PNA + MLEW + T+ +GDLLELYCGNGNFSL LA++F+RVLA E+AKPSVEAA++ Sbjct: 191 PNAKVAEKMLEWAVDCTQESKGDLLELYCGNGNFSLALAQNFERVLATELAKPSVEAAQF 250 Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGLDDA 307 NIAAN + NV+I+RMS++EFTQAM +REFNRLKD +D+ SYR TIFVDPPRSG+D Sbjct: 251 NIAANQIGNVQIIRMSAEEFTQAMEGKREFNRLKDAGVDLQSYRCNTIFVDPPRSGMDID 310 Query: 308 TVGMVQAYPHILYISCNPDSLCRDLSILSTTHT 340 T MVQ Y ILYISCNP++L +L +L + Sbjct: 311 TCKMVQGYERILYISCNPETLQENLQVLGGNPS 343 >gi|71279320|ref|YP_267102.1| tRNA (uracil-5-)-methyltransferase [Colwellia psychrerythraea 34H] gi|123634093|sp|Q48A12|TRMA_COLP3 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|71145060|gb|AAZ25533.1| tRNA (uracil-5-)-methyltransferase [Colwellia psychrerythraea 34H] Length = 364 Score = 389 bits (999), Expect = e-106, Method: Compositional matrix adjust. Identities = 179/358 (50%), Positives = 259/358 (72%), Gaps = 1/358 (0%) Query: 8 DQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQT 67 D Y+ QL++K + ++ F +P ++ S P++YR RAEF +WH+GDDLY+IMFD +T Sbjct: 8 DNYDAQLSKKQQDMAKLFSDFNLPAPDLYPSVPLNYRQRAEFRVWHEGDDLYYIMFDSKT 67 Query: 68 KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLL 127 KE+ R+D F S LIN M ++ATI+ + LR KLFQ+D+L++ S + +++++YH+ L Sbjct: 68 KEKFRVDDFPVASELINNAMKALLATIKDQRELRFKLFQVDFLSTLSGELLISMLYHKPL 127 Query: 128 DDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSF 187 +D W+ A +L+ L + +IGRA K KI +D+DYV E L V G+T +Y+Q+ENSF Sbjct: 128 EDNWQIEAEKLKAQLSTIA-PVDIIGRAKKQKIIVDKDYVMESLNVGGKTYVYQQVENSF 186 Query: 188 TQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA 247 TQPNAG+N ML W AT+ GDL+ELYCGNGNFS+ LA +F+RVL EI+K SV +A Sbjct: 187 TQPNAGVNEQMLLWAQQATQNAGGDLIELYCGNGNFSIALAENFERVLGTEISKTSVRSA 246 Query: 248 RYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307 + NI+ N ++N+ IVRMSS+EF+QAM ER+F RL+D D+ +Y + T+ VDPPR+GLD Sbjct: 247 QINISENGIDNIDIVRMSSEEFSQAMNGERKFRRLEDFDLTTYNYDTVLVDPPRAGLDRD 306 Query: 308 TVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 +V +V+ + I+YISCNP++L +L++L TH I++ ALFDQFPYT H+E GV+L RK Sbjct: 307 SVELVRRFNKIIYISCNPETLKDNLALLVETHQIDKFALFDQFPYTDHIETGVILTRK 364 >gi|297518619|ref|ZP_06937005.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli OP50] Length = 286 Score = 388 bits (996), Expect = e-105, Method: Compositional matrix adjust. Identities = 186/281 (66%), Positives = 223/281 (79%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L +QYE QLAEKV RL+ MM F ++FRS HYRMRAEF IWHDGDDLYHI+FD Sbjct: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTK R+R+D F S LIN LM M+A +R P+LR KLFQIDYLT+ S+QA+V+L+YH Sbjct: 66 QQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + LDD WR+ A LRDAL A+ + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E Sbjct: 126 KKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPN +N+ MLEW L TKG +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV Sbjct: 186 NSFTQPNTAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285 AA+YNIAANH++NV+I+RM+++EFTQAM REFNRL+ I Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGI 286 >gi|153840002|ref|ZP_01992669.1| tRNA (uracil-5-)-methyltransferase [Vibrio parahaemolyticus AQ3810] gi|149746450|gb|EDM57461.1| tRNA (uracil-5-)-methyltransferase [Vibrio parahaemolyticus AQ3810] Length = 318 Score = 385 bits (988), Expect = e-105, Method: Compositional matrix adjust. Identities = 181/317 (57%), Positives = 238/317 (75%), Gaps = 2/317 (0%) Query: 51 IWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYL 110 +WH+G+DLY+IMF+Q+T+E+ R+D F S LIN LM ++ ++ LR KLFQ+D+L Sbjct: 1 VWHEGEDLYYIMFNQETREKYRVDQFPAASRLINDLMPLLVEAMKDNESLRRKLFQVDFL 60 Query: 111 TSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDER 170 ++ S + +V+L+YHR LD+ W E A L+ L+ + + +IGRA K KI LDRDYV E+ Sbjct: 61 STLSGEILVSLLYHRQLDEEWIENAKALKQRLNDEGFNLNIIGRARKMKIILDRDYVIEK 120 Query: 171 LTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARH 230 L V G++ IY+Q+ENSFTQPN + MLEW + T+ GDLLELYCGNGNFSL LA++ Sbjct: 121 LDVNGQSYIYQQVENSFTQPNGKVAEKMLEWAVDCTQESTGDLLELYCGNGNFSLALAQN 180 Query: 231 FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIH 288 FDRVLA E+AKPSVE+A+YNIAAN ++NV+I+RMS++EFT+AM +REF RLKD +D+ Sbjct: 181 FDRVLATELAKPSVESAQYNIAANKIDNVQIIRMSAEEFTEAMEGKREFRRLKDNGVDLK 240 Query: 289 SYRFKTIFVDPPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFD 348 SY TIFVDPPR+G+D T MVQ Y I+YISCNP++L +L ILS TH + R ALFD Sbjct: 241 SYNCNTIFVDPPRAGMDVDTCKMVQGYERIMYISCNPETLKENLDILSETHNVTRFALFD 300 Query: 349 QFPYTRHMECGVLLVRK 365 QFPYT HME GVLL RK Sbjct: 301 QFPYTHHMEAGVLLERK 317 >gi|134035060|sp|Q5QVT1|TRMA_IDILO RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT Length = 366 Score = 384 bits (986), Expect = e-104, Method: Compositional matrix adjust. Identities = 179/357 (50%), Positives = 256/357 (71%), Gaps = 1/357 (0%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTK 68 +Y QQLA+K DR+R+M F + +++F S HYRMRAEF +WH+GDDLY+IMF+ +T+ Sbjct: 10 EYPQQLAQKADRVREMFRPFHLNEVEVFESPASHYRMRAEFRVWHEGDDLYYIMFNPETR 69 Query: 69 ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLD 128 E++R++ F+PGSLLIN LM E+++ ++ +LR KLFQ+D+LT+ + +AI++L+YHR LD Sbjct: 70 EKIRMNEFIPGSLLINELMKELISLLKPNDVLRRKLFQVDFLTTTTGEAIISLLYHRPLD 129 Query: 129 DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFT 188 D W + AI+LR+AL + ++++IGRA K K L ++ V E + V G++ + Q ENSFT Sbjct: 130 DQWEQEAIQLREALTSIA-KVEVIGRARKQKRVLYKESVTEEVKVDGKSYLSLQTENSFT 188 Query: 189 QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248 QPNA IN M+ W DLLELYCGNGNF+L LA +F+RVLA EI+K SV AAR Sbjct: 189 QPNAIINQQMISWAKRHAGNNSHDLLELYCGNGNFTLPLAENFNRVLATEISKSSVAAAR 248 Query: 249 YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDAT 308 N N++ NV +VRMS++EF+ A+ E E R D +IHS+ +T+ VDPPR+GLD T Sbjct: 249 ENAELNNIKNVTVVRMSAEEFSAALSGELESKRAADAEIHSFDCQTVLVDPPRAGLDKDT 308 Query: 309 VGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 + +V Y I+YISCNP++L ++ LS++H + A+FDQFPYT H+E GV+L RK Sbjct: 309 LKLVSQYQRIIYISCNPETLTENIHDLSSSHKVTAAAMFDQFPYTDHIETGVVLERK 365 >gi|119478185|ref|ZP_01618241.1| tRNA (uracil-5-)-methyltransferase [marine gamma proteobacterium HTCC2143] gi|119448694|gb|EAW29938.1| tRNA (uracil-5-)-methyltransferase [marine gamma proteobacterium HTCC2143] Length = 380 Score = 382 bits (981), Expect = e-104, Method: Compositional matrix adjust. Identities = 177/357 (49%), Positives = 255/357 (71%), Gaps = 6/357 (1%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQT-K 68 Y QQL K D + F P L IF S +HYR+RAEF IWH+GDD ++ MF++ K Sbjct: 24 YSQQLQTKADLITSRFADFDAPALTIFNSPALHYRVRAEFKIWHEGDDSFYAMFNKAAPK 83 Query: 69 ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLD 128 + +RID F GS LIN+LM ++M+ IR + +LR KLFQ+++LT+ S ++++T+IYH+ L+ Sbjct: 84 QPVRIDTFPIGSELINSLMSKLMSEIRSDSMLRLKLFQVEFLTTLSGESLITMIYHKPLN 143 Query: 129 DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFT 188 D WR A L+ L R +IGR+ K ++ L +D V E LTV GR +Y+Q+ENSFT Sbjct: 144 DDWRRLAEILQQKLDTR-----IIGRSKKQRMVLSQDCVTETLTVDGRQYLYQQVENSFT 198 Query: 189 QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248 QPNA +N ML W L ++ + GDL+ELYCGNGNF+ VLA +FD+VLA EI+K SV++A+ Sbjct: 199 QPNAQVNQKMLSWALTSSADLGGDLVELYCGNGNFTAVLAANFDKVLATEISKTSVKSAQ 258 Query: 249 YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDAT 308 +N N +NNV I RMS++EF+ A+ +R F RLKD+D+ SY F T+ VDPPR+GLD AT Sbjct: 259 HNFEMNGINNVHIARMSAEEFSSALAGDRTFRRLKDVDLSSYTFSTVLVDPPRAGLDTAT 318 Query: 309 VGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 ++ + +ILYISCNP++L ++++ L+ TH I ++A+FDQFPYT H+ECG++L ++ Sbjct: 319 TQLISRFDNILYISCNPETLYQNVADLNKTHRITKIAIFDQFPYTDHIECGIMLKKR 375 >gi|89092512|ref|ZP_01165465.1| tRNA (uracil-5-)-methyltransferase [Oceanospirillum sp. MED92] gi|89083024|gb|EAR62243.1| tRNA (uracil-5-)-methyltransferase [Oceanospirillum sp. MED92] Length = 362 Score = 375 bits (964), Expect = e-102, Method: Compositional matrix adjust. Identities = 182/359 (50%), Positives = 247/359 (68%), Gaps = 6/359 (1%) Query: 8 DQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQT 67 + YE QL EK + Q F +P +++F S HYRMR EF +WHD DDLY++MF++ Sbjct: 9 ENYESQLVEKKTKTAQQFAEFDLPEIEVFESPRSHYRMRCEFRVWHDEDDLYYVMFEKGN 68 Query: 68 KE-RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL 126 K R+RID+ S I+ +M E++ I+ +LR KLFQID+L++ S + +VTL+YHR Sbjct: 69 KHARIRIDHCPMVSERIHNVMFELLEAIKPSEVLRRKLFQIDFLSTLSGELLVTLLYHRP 128 Query: 127 LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS 186 +D+ W E A L++ K+ IQLIGR+ KTKI LD+D+V E L V G Y+Q+ENS Sbjct: 129 IDEVWAEEARVLKE-----KFNIQLIGRSRKTKILLDQDFVVETLNVKGGEFHYKQVENS 183 Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246 F+QPNA + HM+ W + AT+G GD++ELYCGNGNF+L LA++F RV+A EI+K SV A Sbjct: 184 FSQPNAEVCQHMINWAIDATEGAGGDMVELYCGNGNFTLPLAQNFRRVVATEISKTSVRA 243 Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306 A+YNI N V NV +VR+SS+EF+Q + E R KD+ + F T+ VDPPRSGLDD Sbjct: 244 AQYNIEVNGVENVDVVRISSEEFSQVLSGAVEKRRTKDLGLKECNFTTVLVDPPRSGLDD 303 Query: 307 ATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 TV VQ Y +ILYISCNP++L +L ++ TH +ER A+FDQFPYT H+E GV L RK Sbjct: 304 DTVKQVQNYDNILYISCNPETLKTNLEEITKTHKLERFAIFDQFPYTDHLESGVFLTRK 362 >gi|145640957|ref|ZP_01796539.1| tRNA (uracil-5-)-methyltransferase [Haemophilus influenzae R3021] gi|145274471|gb|EDK14335.1| tRNA (uracil-5-)-methyltransferase [Haemophilus influenzae 22.4-21] Length = 304 Score = 374 bits (959), Expect = e-101, Method: Compositional matrix adjust. Identities = 175/304 (57%), Positives = 227/304 (74%) Query: 62 MFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTL 121 MFDQ T +R R+D F S+LIN +M ++ ++ + +L KLFQIDYL++ S++ IV+L Sbjct: 1 MFDQATLQRYRVDEFPIASMLINRMMQTLLPLLKQQEVLHKKLFQIDYLSTLSNKIIVSL 60 Query: 122 IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYR 181 +YH+ L + W A L+D L + + +Q+IGRA+K KIC ++DYVDE L V GR +YR Sbjct: 61 LYHKTLTEEWESAAKNLKDLLEKQGFNVQIIGRASKQKICFEQDYVDEVLPVNGRNYVYR 120 Query: 182 QIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241 Q+ENSFTQPNA +N MLEW + T+ +GDLLELYCGNGNFS+ LA++F +VLA EIAK Sbjct: 121 QVENSFTQPNAMVNCKMLEWAIDCTQNSEGDLLELYCGNGNFSIALAQNFRKVLATEIAK 180 Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301 PSV AA++NIA N V+N++I+RMS++EFTQAM R FNRLK ID+ SY TIFVDPPR Sbjct: 181 PSVAAAQFNIAENKVDNLQIIRMSAEEFTQAMNGVRAFNRLKGIDLKSYECNTIFVDPPR 240 Query: 302 SGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVL 361 +GLD TV +VQ Y ILYISCNP +LC +L LS TH IE+ ALFDQFPYT HME G+ Sbjct: 241 AGLDPDTVKLVQNYDRILYISCNPHTLCDNLVELSKTHRIEKAALFDQFPYTDHMESGLW 300 Query: 362 LVRK 365 L+RK Sbjct: 301 LIRK 304 >gi|326797231|ref|YP_004315051.1| tRNA (uracil-5-)-methyltransferase [Marinomonas mediterranea MMB-1] gi|326547995|gb|ADZ93215.1| tRNA (uracil-5-)-methyltransferase [Marinomonas mediterranea MMB-1] Length = 364 Score = 372 bits (956), Expect = e-101, Method: Compositional matrix adjust. Identities = 178/358 (49%), Positives = 245/358 (68%), Gaps = 6/358 (1%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ-TK 68 YEQQL EKVD L+ +M F +P L +++S HYRMRAEF +WHDGDD+Y+ MFD + + Sbjct: 11 YEQQLDEKVDALKALMAEFSMPELNVYKSAETHYRMRAEFRVWHDGDDMYYAMFDSKDPR 70 Query: 69 ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLD 128 +R+D F S LIN LM ++ +R P+LR KLFQ+D+LT+Q+ +A+++L+YH+ +D Sbjct: 71 TPIRVDQFPVASKLINELMPALLEAVRHVPILRHKLFQVDFLTTQTGEALISLLYHKPID 130 Query: 129 DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFT 188 D W + A L + A IGR+ K K L RD+V E LTV G+ Y+Q+ENSFT Sbjct: 131 DEWEDAAKELNKSFPA----CHFIGRSRKKKKVLTRDFVMETLTVNGQKYHYQQVENSFT 186 Query: 189 QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248 QPNAGI+ MLEW + T+G GDLLE+YCGNGNFS+ LAR FD+V+ EIAK SV +A Sbjct: 187 QPNAGISEKMLEWAMDVTQGCSGDLLEMYCGNGNFSIPLARRFDQVIGTEIAKVSVNSAS 246 Query: 249 YNIAANHVNNVKIVRMSSKEFTQAMRREREFNR-LKDIDIHSYRFKTIFVDPPRSGLDDA 307 NIA N + NV++V+M+S++ + A+ E E + L + + + VDPPR+GLDDA Sbjct: 247 LNIAMNGMKNVQVVKMASEDVSAALNGEGELPKALVQAGMANLSPSVVLVDPPRAGLDDA 306 Query: 308 TVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 TV +V+ ILYISCNP++L ++ LS+TH + R ALFDQFPYT H+E GV L R+ Sbjct: 307 TVELVRKVDKILYISCNPETLKNNMQALSSTHDVTRFALFDQFPYTHHVEAGVFLERR 364 >gi|262831412|sp|B3PJ74|TRMA_CELJU RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT Length = 366 Score = 371 bits (953), Expect = e-100, Method: Compositional matrix adjust. Identities = 186/356 (52%), Positives = 241/356 (67%), Gaps = 5/356 (1%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69 YE QL +K+ RL Q +F +P + +FRS H+RMR EF IWH+ ++MF Q K Sbjct: 16 YEAQLQQKLIRLNQDFASFNLPEISVFRSPEKHFRMRTEFRIWHERGTAMYVMFSQTDKR 75 Query: 70 RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDD 129 I F GS IN LM E+MA + LR KLFQ+++LTS S+QA++TL+YH+ LD+ Sbjct: 76 PYPIREFPIGSERINQLMPELMALVNRHECLRHKLFQVEFLTSLSNQALITLVYHKPLDE 135 Query: 130 AWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQ 189 W A LR L+ +++IGR+ K KI L+RD++ E L V GR Y+Q+E SFTQ Sbjct: 136 EWISAATDLRKQLN-----VEIIGRSRKQKILLERDHIIECLKVNGREYRYQQVEGSFTQ 190 Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249 PNA + ML W T+ GDLLELYCGNGNF+L LA++FDRVLA EI+K SV++A Y Sbjct: 191 PNARVCEQMLSWAQEQTRHTGGDLLELYCGNGNFTLPLAQNFDRVLATEISKTSVDSALY 250 Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309 N N V N++I RMSS+EFTQAM REFNRLK I ++ YRF TIFVDPPR+GLD AT Sbjct: 251 NSRLNQVENLQIARMSSEEFTQAMDGVREFNRLKHISLNDYRFSTIFVDPPRAGLDPATC 310 Query: 310 GMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 + Q + +I+YISCNP++L +L L+ TH I A FDQFPYT H+ECGVLL R+ Sbjct: 311 HLAQRFDNIVYISCNPETLKDNLQTLTQTHQICTFAAFDQFPYTHHLECGVLLQRR 366 >gi|192359782|ref|YP_001982649.1| tRNA (uracil-5-)-methyltransferase [Cellvibrio japonicus Ueda107] gi|190685947|gb|ACE83625.1| tRNA (uracil-5-)-methyltransferase [Cellvibrio japonicus Ueda107] Length = 374 Score = 371 bits (952), Expect = e-100, Method: Compositional matrix adjust. Identities = 186/356 (52%), Positives = 241/356 (67%), Gaps = 5/356 (1%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69 YE QL +K+ RL Q +F +P + +FRS H+RMR EF IWH+ ++MF Q K Sbjct: 24 YEAQLQQKLIRLNQDFASFNLPEISVFRSPEKHFRMRTEFRIWHERGTAMYVMFSQTDKR 83 Query: 70 RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDD 129 I F GS IN LM E+MA + LR KLFQ+++LTS S+QA++TL+YH+ LD+ Sbjct: 84 PYPIREFPIGSERINQLMPELMALVNRHECLRHKLFQVEFLTSLSNQALITLVYHKPLDE 143 Query: 130 AWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQ 189 W A LR L+ +++IGR+ K KI L+RD++ E L V GR Y+Q+E SFTQ Sbjct: 144 EWISAATDLRKQLN-----VEIIGRSRKQKILLERDHIIECLKVNGREYRYQQVEGSFTQ 198 Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249 PNA + ML W T+ GDLLELYCGNGNF+L LA++FDRVLA EI+K SV++A Y Sbjct: 199 PNARVCEQMLSWAQEQTRHTGGDLLELYCGNGNFTLPLAQNFDRVLATEISKTSVDSALY 258 Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309 N N V N++I RMSS+EFTQAM REFNRLK I ++ YRF TIFVDPPR+GLD AT Sbjct: 259 NSRLNQVENLQIARMSSEEFTQAMDGVREFNRLKHISLNDYRFSTIFVDPPRAGLDPATC 318 Query: 310 GMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 + Q + +I+YISCNP++L +L L+ TH I A FDQFPYT H+ECGVLL R+ Sbjct: 319 HLAQRFDNIVYISCNPETLKDNLQTLTQTHQICTFAAFDQFPYTHHLECGVLLQRR 374 >gi|56475741|ref|YP_157330.1| tRNA (uracil-5-)-methyltransferase [Aromatoleum aromaticum EbN1] gi|81599034|sp|Q5P8D0|TRMA_AZOSE RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|56311784|emb|CAI06429.1| tRNA (Uracil-5-)-methyltransferase [Aromatoleum aromaticum EbN1] Length = 368 Score = 369 bits (947), Expect = e-100, Method: Compositional matrix adjust. Identities = 179/358 (50%), Positives = 242/358 (67%), Gaps = 6/358 (1%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ-QT 67 +Y QLA+KV + + F VP +F S P+HYR+RAEF +WHDG+ + + MFD + Sbjct: 10 EYASQLADKVTQFKHAFTPFAVPEPTVFPSAPLHYRLRAEFRMWHDGERIDYAMFDPAEP 69 Query: 68 KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLL 127 K+ + I+ F + I A M + +R L+ +LFQ+++L + S + +++LIYHR L Sbjct: 70 KQPIAIEQFDIAAEPICAAMPRLRERLRASETLKRRLFQVEFLATLSGELMISLIYHRPL 129 Query: 128 DDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSF 187 D++W A L L+ +QLIGR+ K KI LDRD+V ER + GR L Y+QIE SF Sbjct: 130 DESWEAAARELAAELN-----VQLIGRSRKQKIVLDRDWVLERFALDGRPLQYKQIEGSF 184 Query: 188 TQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA 247 TQPN G+N ML W +G+ GDLLELYCGNGNF++ LA FDRVLA E++K SVEAA Sbjct: 185 TQPNGGVNRQMLGWACEQVRGVGGDLLELYCGNGNFTVALAPLFDRVLATEVSKTSVEAA 244 Query: 248 RYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307 YN+AAN + NV +VRMSS E + A+ R REF R+KD+D+ YRF T+FVDPPRSGLD Sbjct: 245 HYNLAANDIGNVAMVRMSSDEISAALARTREFRRMKDVDLDRYRFSTLFVDPPRSGLDAP 304 Query: 308 TVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 TV + + + ILYISCNP +L +++ L TH I A+FDQFPYTRH+ECG+LL R+ Sbjct: 305 TVELARGFDRILYISCNPQTLQENVAALQATHGIAGAAVFDQFPYTRHLECGLLLTRR 362 >gi|87121190|ref|ZP_01077081.1| tRNA (uracil-5-)-methyltransferase [Marinomonas sp. MED121] gi|86163682|gb|EAQ64956.1| tRNA (uracil-5-)-methyltransferase [Marinomonas sp. MED121] Length = 367 Score = 368 bits (944), Expect = e-100, Method: Compositional matrix adjust. Identities = 178/361 (49%), Positives = 247/361 (68%), Gaps = 6/361 (1%) Query: 7 IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66 IDQY+ QLAEK+ RL ++M +P +IF SE HYRMRAEF IWHDGDD+Y+ MFD Sbjct: 8 IDQYQPQLAEKISRLDELMATLDLPAAEIFESEASHYRMRAEFRIWHDGDDMYYAMFDSN 67 Query: 67 -TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHR 125 + +R+D F S LIN LM ++ ++ P+LR KLFQ+D+LT+Q+ +A+++++YH+ Sbjct: 68 DPRTPIRVDQFPVASELINELMPALLDAVKTVPVLRHKLFQVDFLTTQTGEALISMLYHK 127 Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIEN 185 +D+ W A L +A IGR+ K K+ L RD+V E LTV G+ Y+Q+EN Sbjct: 128 PIDEDWFAAAQTLNEAFP----HCHFIGRSRKKKMILTRDFVMETLTVNGKKYHYQQVEN 183 Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 SFTQPNAGIN ML W L T+ GDLLE+YCGNGNFS+ LAR FDRV+A EI+K SV Sbjct: 184 SFTQPNAGINESMLSWALDVTQNESGDLLEMYCGNGNFSIPLARRFDRVVATEISKVSVN 243 Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR-LKDIDIHSYRFKTIFVDPPRSGL 304 +A+ NIA N ++NV++V+M+S++ + A+ + E + L + S + VDPPR+GL Sbjct: 244 SAQLNIAINGMSNVQVVKMASEDVSAALNGQTELPKQLIQAGMESLEPSVVLVDPPRAGL 303 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D TV +++ ILYISCNP++L +L LS TH++ER A+FDQFPYT H+E GV LVR Sbjct: 304 DSDTVELIRKVDKILYISCNPETLKANLDALSDTHSVERYAVFDQFPYTHHIETGVYLVR 363 Query: 365 K 365 + Sbjct: 364 R 364 >gi|262372741|ref|ZP_06066020.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter junii SH205] gi|262312766|gb|EEY93851.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter junii SH205] Length = 361 Score = 365 bits (937), Expect = 7e-99, Method: Compositional matrix adjust. Identities = 178/361 (49%), Positives = 246/361 (68%), Gaps = 11/361 (3%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF----DQ 65 Y+QQL EKV+R+ F P L++F+S H+RMRAEF IWH DDL++ MF D Sbjct: 5 YQQQLQEKVERITAQFAPFNPPALEVFQSPEQHFRMRAEFRIWHTEDDLFYAMFERAEDG 64 Query: 66 QTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHR 125 + K +RID F IN LM ++ ++ P+L ++F+ D+L++ S + +VTLIYHR Sbjct: 65 KQKAVIRIDDFPIADSSINNLMPLLLEELKATPILSQRIFEADFLSTLSGEMLVTLIYHR 124 Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIEN 185 LD W A L D L+ I+++GR+ K+ + DYV E+L V GRT Y+QIE+ Sbjct: 125 RLDAEWESAAKALADKLN-----IKIMGRSRGQKVIIGDDYVVEQLNVHGRTFKYKQIES 179 Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 SFTQPNA + HMLEW A +G Q DLLELYCGNGNF+L L+ F RVLA E+AK SV Sbjct: 180 SFTQPNAQVCQHMLEWACDAAEGAQKDLLELYCGNGNFTLPLSLKFKRVLATELAKSSVH 239 Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL--KDIDIHSYRFKTIFVDPPRSG 303 AA++NI N ++N+++ R+S++EFTQA + ER F RL +IDI SY F T+FVDPPR+G Sbjct: 240 AAQWNIEQNQIDNIQVARLSAEEFTQAYQGERTFRRLLEAEIDIQSYDFDTVFVDPPRAG 299 Query: 304 LDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363 +DD T+ ++Q + I+YISCNPD+L +L IL+ TH I++ A+FDQFP+T H+E GVLL Sbjct: 300 IDDETLKLLQGFERIIYISCNPDTLHDNLKILTQTHRIQKFAMFDQFPFTHHVESGVLLE 359 Query: 364 R 364 + Sbjct: 360 K 360 >gi|56461373|ref|YP_156654.1| tRNA (uracil-5-)-methyltransferase [Idiomarina loihiensis L2TR] gi|56180383|gb|AAV83105.1| tRNA (uracil-5-)-methyltransferase [Idiomarina loihiensis L2TR] Length = 342 Score = 363 bits (932), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 170/342 (49%), Positives = 243/342 (71%), Gaps = 1/342 (0%) Query: 24 MMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLI 83 M F + +++F S HYRMRAEF +WH+GDDLY+IMF+ +T+E++R++ F+PGSLLI Sbjct: 1 MFRPFHLNEVEVFESPASHYRMRAEFRVWHEGDDLYYIMFNPETREKIRMNEFIPGSLLI 60 Query: 84 NALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALH 143 N LM E+++ ++ +LR KLFQ+D+LT+ + +AI++L+YHR LDD W + AI+LR+AL Sbjct: 61 NELMKELISLLKPNDVLRRKLFQVDFLTTTTGEAIISLLYHRPLDDQWEQEAIQLREALT 120 Query: 144 ARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL 203 + ++++IGRA K K L ++ V E + V G++ + Q ENSFTQPNA IN M+ W Sbjct: 121 SIA-KVEVIGRARKQKRVLYKESVTEEVKVDGKSYLSLQTENSFTQPNAIINQQMISWAK 179 Query: 204 AATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVR 263 DLLELYCGNGNF+L LA +F+RVLA EI+K SV AAR N N++ NV +VR Sbjct: 180 RHAGNNSHDLLELYCGNGNFTLPLAENFNRVLATEISKSSVAAARENAELNNIKNVTVVR 239 Query: 264 MSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYISC 323 MS++EF+ A+ E E R D +IHS+ +T+ VDPPR+GLD T+ +V Y I+YISC Sbjct: 240 MSAEEFSAALSGELESKRAADAEIHSFDCQTVLVDPPRAGLDKDTLKLVSQYQRIIYISC 299 Query: 324 NPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 NP++L ++ LS++H + A+FDQFPYT H+E GV+L RK Sbjct: 300 NPETLTENIHDLSSSHKVTAAAMFDQFPYTDHIETGVVLERK 341 >gi|226326751|ref|ZP_03802269.1| hypothetical protein PROPEN_00611 [Proteus penneri ATCC 35198] gi|225204588|gb|EEG86942.1| hypothetical protein PROPEN_00611 [Proteus penneri ATCC 35198] Length = 292 Score = 363 bits (932), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 170/287 (59%), Positives = 219/287 (76%) Query: 1 MSGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60 M +L Y+ QL EK RL+ MM F P ++F S HYRMRAEF IWH+ D LYH Sbjct: 1 MQNSLPTQTYQSQLNEKTQRLQTMMAPFNAPEAEVFSSPEQHYRMRAEFRIWHEDDSLYH 60 Query: 61 IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVT 120 IMFDQ+TK+R+R+D F S LIN +M+ ++A I+ +P LR KLFQIDYL++ S++ IV+ Sbjct: 61 IMFDQETKQRIRVDQFPVASQLINKMMVVLLAEIKDKPTLRKKLFQIDYLSTLSNKIIVS 120 Query: 121 LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIY 180 L+YH+ +D+ W++ A LR L A+ + +QLIGRA KTKI LD D++DE L VAG+ +IY Sbjct: 121 LLYHKKIDETWQQEAQALRQILIAQGFDVQLIGRAYKTKIMLDNDFIDEVLPVAGKEMIY 180 Query: 181 RQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240 RQ+ENSFTQPNA +N+ MLEW L AT+ +GDLLELYCGNGNFSL LAR+FDRVLA EIA Sbjct: 181 RQVENSFTQPNAQVNIKMLEWALKATENAKGDLLELYCGNGNFSLALARNFDRVLATEIA 240 Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDI 287 KPSV AA+YNIA NH++NVKI+RMS+++FTQAM REF RL+ ID+ Sbjct: 241 KPSVYAAQYNIAMNHIDNVKIIRMSAEDFTQAMNGVREFKRLEGIDL 287 >gi|50084803|ref|YP_046313.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter sp. ADP1] gi|115305867|sp|Q6FBS0|TRMA_ACIAD RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|49530779|emb|CAG68491.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter sp. ADP1] Length = 361 Score = 362 bits (929), Expect = 5e-98, Method: Compositional matrix adjust. Identities = 178/359 (49%), Positives = 238/359 (66%), Gaps = 11/359 (3%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF----DQ 65 Y+QQL K++R+ F P L++F S H+RMRAEF IWH +DL++ MF D Sbjct: 5 YQQQLQSKIERITHQFAEFNPPALEVFESPEQHFRMRAEFRIWHTDNDLFYAMFERNEDG 64 Query: 66 QTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHR 125 + KE +R+D F IN LM ++ ++ P L ++F+ D+LT+ S + +VTLIYHR Sbjct: 65 KQKEVIRVDEFPIADQSINQLMPRLLEELKANPTLSQRIFEADFLTTLSGEMLVTLIYHR 124 Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIEN 185 LD W A L A K I+++GR+ K+ + DYV E+L V GRT Y+QIE+ Sbjct: 125 KLDTEWESAAKAL-----AEKLNIKIMGRSRGQKVIIGDDYVVEQLNVHGRTFKYKQIES 179 Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 SFTQPNA + ML W +G DLLELYCGNGNF+L L+ HF RVLA E+AK SV Sbjct: 180 SFTQPNAEVCQKMLTWACDVIQGSNQDLLELYCGNGNFTLPLSLHFRRVLATELAKSSVY 239 Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSG 303 AA++NI N + N++I R+S++EFTQA + EREF RL++ IDI SY F TIFVDPPR+G Sbjct: 240 AAQWNIEQNQIENIQIARLSAEEFTQAYQGEREFRRLQEANIDIQSYEFDTIFVDPPRAG 299 Query: 304 LDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362 +DD T+ +++ + ILYISCNPD+L +L LS TH I R ALFDQFP+T H+E GVLL Sbjct: 300 IDDETLKLLKGFKRILYISCNPDTLYNNLKTLSQTHKITRFALFDQFPFTHHVESGVLL 358 >gi|226954161|ref|ZP_03824625.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter sp. ATCC 27244] gi|226835110|gb|EEH67493.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter sp. ATCC 27244] Length = 361 Score = 361 bits (927), Expect = 9e-98, Method: Compositional matrix adjust. Identities = 177/361 (49%), Positives = 241/361 (66%), Gaps = 11/361 (3%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF----DQ 65 Y+QQL EKV+R+ F P L++F+S H+RMRAEF +WH DDL++ MF D Sbjct: 5 YQQQLQEKVERITAQFAPFNPPALEVFQSPEQHFRMRAEFRLWHTDDDLFYAMFERAEDG 64 Query: 66 QTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHR 125 + K +RID F IN LM ++ ++ P+L ++F+ D+L + S + +VTLIYHR Sbjct: 65 KQKTVIRIDEFPIADQSINDLMPRLLEELKAVPILSQRIFEADFLATLSGEMLVTLIYHR 124 Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIEN 185 LD W A L A K I+++GR+ K+ + DYV E+L V GR Y+QIE+ Sbjct: 125 RLDSEWEAAAKTL-----AEKLNIKIMGRSRGQKVIVGDDYVVEQLNVHGRIFKYKQIES 179 Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 SFTQPN + HMLEW A + Q DLLELYCGNGNF+L L+ F+RVLA E+AK SV Sbjct: 180 SFTQPNTQVCKHMLEWACDAAQNSQKDLLELYCGNGNFTLPLSLKFNRVLATELAKSSVY 239 Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSG 303 AA++NI N + N+++ R+S++EFTQA EREF RL++ IDI SY F TIFVDPPR+G Sbjct: 240 AAQWNIEQNQIENIQVARLSAEEFTQAYEGEREFRRLQEANIDIQSYHFDTIFVDPPRAG 299 Query: 304 LDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363 +DDAT+ ++Q + I+YISCNPD+L +L L+ TH I + ALFDQFP+T H+E GVLL Sbjct: 300 IDDATLALMQGFERIIYISCNPDTLHDNLKTLTQTHRISKFALFDQFPFTHHIESGVLLE 359 Query: 364 R 364 + Sbjct: 360 K 360 >gi|329120742|ref|ZP_08249404.1| tRNA (uracil-5-)-methyltransferase [Neisseria bacilliformis ATCC BAA-1200] gi|327460539|gb|EGF06875.1| tRNA (uracil-5-)-methyltransferase [Neisseria bacilliformis ATCC BAA-1200] Length = 364 Score = 361 bits (927), Expect = 9e-98, Method: Compositional matrix adjust. Identities = 176/362 (48%), Positives = 240/362 (66%), Gaps = 11/362 (3%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69 Y +QLA+K D LR++ +P +F S HYRMRAEF IWH+G + MF+ K Sbjct: 6 YARQLADKTDFLRRLFAGVAMPEWAVFPSPERHYRMRAEFRIWHEGGGTSYAMFENGKKA 65 Query: 70 R----MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHR 125 +R+ F S INALM E++A + +P+L+ +LFQ ++L++ S +V+LIYHR Sbjct: 66 GGASVVRLAQFPAASAAINALMPELLAALSTKPVLKNRLFQCEFLSTLSGDMLVSLIYHR 125 Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIEN 185 LDDAW+ A L+ R+ I LIGR+ KI L RD+V E L GR YRQ E Sbjct: 126 KLDDAWQAAAQDLQ-----RRLGIALIGRSKGQKIVLSRDFVTEELEAGGRIFRYRQPEG 180 Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 +F+QPNA + MLEW G+ GDLLELYCGNGNF+L LARHF RVLA E++K SV Sbjct: 181 AFSQPNAAVCAKMLEWACGCAAGLGGDLLELYCGNGNFTLPLARHFGRVLATEVSKTSVR 240 Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSG 303 AA++NI A+ +N++I R+S++EF QA REF RL++ I + Y F TIFVDPPR+G Sbjct: 241 AAQWNIEADGADNIRIARLSAEEFAQAYGGGREFRRLREQGISLSDYAFSTIFVDPPRAG 300 Query: 304 LDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363 +D+AT+ ++Q + +I+YISCNP++L +L +L TH I+ ALFDQFP+T H+E GVLL Sbjct: 301 VDEATLRLMQGFDNIIYISCNPETLRANLDVLLQTHEIKAAALFDQFPFTAHIESGVLLR 360 Query: 364 RK 365 RK Sbjct: 361 RK 362 >gi|213417764|ref|ZP_03350880.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 239 Score = 361 bits (926), Expect = 1e-97, Method: Compositional matrix adjust. Identities = 165/239 (69%), Positives = 197/239 (82%) Query: 127 LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS 186 +D+ WRE A LRDAL A+ + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+ENS Sbjct: 1 MDEEWREAATALRDALRAQGLNVHLIGRATKTKIELDQDYIDERLPVAGKEIIYRQVENS 60 Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246 FTQPNA +N+ MLEW L TK +GDLLELYCGNGNFSL LAR+F+RVLA EIAKPSV A Sbjct: 61 FTQPNAAMNIQMLEWALEVTKDSKGDLLELYCGNGNFSLALARNFNRVLATEIAKPSVAA 120 Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306 A+YNIAANH++NV+I+RM+++EFTQAM REFNRL+ ID+ Y+ +TIFVDPPRSGLD Sbjct: 121 AQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKRYQCETIFVDPPRSGLDS 180 Query: 307 ATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 T MVQAYP ILYISCNP++LC++L LS THT+ RLALFDQFPYT HMECGVLL + Sbjct: 181 ETEKMVQAYPRILYISCNPETLCKNLETLSQTHTVSRLALFDQFPYTHHMECGVLLTAR 239 >gi|152998306|ref|YP_001343141.1| tRNA (uracil-5-)-methyltransferase [Marinomonas sp. MWYL1] gi|189036041|sp|A6W3C7|TRMA_MARMS RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|150839230|gb|ABR73206.1| tRNA (uracil-5-)-methyltransferase [Marinomonas sp. MWYL1] Length = 366 Score = 360 bits (925), Expect = 1e-97, Method: Compositional matrix adjust. Identities = 175/362 (48%), Positives = 244/362 (67%), Gaps = 6/362 (1%) Query: 8 DQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ-Q 66 + YE+QL +K L ++M +P +++F S+P HYRMRAEF IWHDGDDLY+ MFD Sbjct: 9 EMYEKQLQDKQAELAKLMATLSLPEMEVFASQPTHYRMRAEFRIWHDGDDLYYAMFDSAD 68 Query: 67 TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL 126 + +R D F+ S LIN LM +++ +R P+LR KLFQ+D+LT+ + +A+++L+YH+ Sbjct: 69 PRTPIRTDQFLAASRLINELMPKLLDAVRDVPVLRYKLFQVDFLTTTTGEALISLLYHKP 128 Query: 127 LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS 186 +D W +L +A A IGR+ K K + RD+V E LTV G+ Y+Q+ENS Sbjct: 129 IDAEWNAAVQQLNNAFPA----CHFIGRSRKKKQIITRDFVMETLTVNGQKFHYQQVENS 184 Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246 FTQPNAGI+ MLEW L TK GDLLE+YCGNGNFS+ LAR FDRV+A EI+K SV + Sbjct: 185 FTQPNAGISEKMLEWALDVTKEASGDLLEMYCGNGNFSIPLARRFDRVVATEISKVSVNS 244 Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR-LKDIDIHSYRFKTIFVDPPRSGLD 305 A+ NIA N ++NV++V+M+S++ + A+ + E + L + + VDPPR+GLD Sbjct: 245 AQLNIAINGMHNVQVVKMASEDVSAALNGDVELPKSLVQAGVSELTPSVVLVDPPRAGLD 304 Query: 306 DATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 DATV +++ ILYISCNP++L +L LS TH + R A+FDQFPYT H+E GV L RK Sbjct: 305 DATVELIRKIDSILYISCNPETLKANLEALSNTHEVVRYAMFDQFPYTHHVETGVFLRRK 364 Query: 366 PS 367 S Sbjct: 365 AS 366 >gi|294650226|ref|ZP_06727599.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter haemolyticus ATCC 19194] gi|292823883|gb|EFF82713.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter haemolyticus ATCC 19194] Length = 361 Score = 359 bits (922), Expect = 3e-97, Method: Compositional matrix adjust. Identities = 176/361 (48%), Positives = 243/361 (67%), Gaps = 11/361 (3%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF----DQ 65 Y+QQL EKV+R+ F P L++F+S H+RMRAEF +WH DDL++ MF D Sbjct: 5 YQQQLQEKVERITAQFAPFNPPALEVFQSPEQHFRMRAEFRLWHTDDDLFYAMFERAEDG 64 Query: 66 QTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHR 125 + K +RI+ F IN LM ++ ++ P+L ++F+ D+L + + +VTLIYHR Sbjct: 65 KQKTVIRINEFPIADQSINDLMPRLLEELKAVPILSQRIFEADFLATLCGEMLVTLIYHR 124 Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIEN 185 LD W A L A K I+++GR+ K+ + DYV E+L V GR Y+QIE+ Sbjct: 125 RLDSEWEAAAKTL-----AEKLNIKIMGRSRGQKVIVGDDYVVEQLNVHGRIFKYKQIES 179 Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 SFTQPNA + HMLEW A + Q DLLELYCGNGNF+L L+ F+RVLA E+AK SV Sbjct: 180 SFTQPNAQVCKHMLEWACDAAQNSQKDLLELYCGNGNFTLPLSLKFNRVLATELAKSSVY 239 Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSG 303 AA++NI N + N+++ R+S++EFTQA + EREF RL++ IDI SY+F TIFVDPPR+G Sbjct: 240 AAQWNIEQNQIENIQVARLSAEEFTQAYQGEREFRRLQEANIDIQSYQFDTIFVDPPRAG 299 Query: 304 LDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363 +DDAT+ ++Q + I+YISCNPD+L +L L+ TH I + ALFDQFP+T H+E GVLL Sbjct: 300 IDDATLTLMQGFERIIYISCNPDTLHDNLKTLTQTHRISKFALFDQFPFTHHIESGVLLE 359 Query: 364 R 364 + Sbjct: 360 K 360 >gi|261379800|ref|ZP_05984373.1| tRNA (uracil-5-)-methyltransferase [Neisseria subflava NJ9703] gi|284797485|gb|EFC52832.1| tRNA (uracil-5-)-methyltransferase [Neisseria subflava NJ9703] Length = 360 Score = 357 bits (916), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 172/362 (47%), Positives = 246/362 (67%), Gaps = 11/362 (3%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69 Y+QQLA+K L+Q+ P +++F S HYRMRAEF IWH+G ++++ MF++ K Sbjct: 4 YQQQLADKKQYLQQLFQGLDFPEIEVFESPEQHYRMRAEFRIWHEGGEMFYAMFERGQKA 63 Query: 70 R----MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHR 125 +R D F S INALM +++ P L+ + + +++L++ S + +VT+IYH+ Sbjct: 64 SGASLIRCDQFPAASESINALMPKLIEAASNHPELKNRWYAVEFLSTLSGEMLVTMIYHK 123 Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIEN 185 L++AW++ A L A I +IGR+ KI L +D+V E LTV G+T YRQIE Sbjct: 124 KLNEAWQQAAQEL-----AHNLGIHIIGRSRGQKIVLSQDFVTEALTVNGKTFRYRQIEG 178 Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 SFTQPNA + ML W A K + DLLELYCGNGNF+L L++HF++VLA E++K SV Sbjct: 179 SFTQPNAQVCQKMLTWACDAAKNLGKDLLELYCGNGNFTLPLSQHFNQVLATEVSKTSVN 238 Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSG 303 AA++NI AN + N+KI R+S++EFT+A + REF RL++ ID+ +Y F TIFVDPPR+G Sbjct: 239 AAQWNIEANQITNLKIARLSAEEFTEAYTQNREFRRLQEQGIDLKNYDFSTIFVDPPRAG 298 Query: 304 LDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363 +DD T+ +V + ++LYISCNP++L +L L THTIER ALFDQFP+T H+E GV L Sbjct: 299 VDDETLKLVARFDNVLYISCNPETLRANLDTLCQTHTIERAALFDQFPFTHHIESGVWLK 358 Query: 364 RK 365 +K Sbjct: 359 KK 360 >gi|260550065|ref|ZP_05824279.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter sp. RUH2624] gi|260406820|gb|EEX00299.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter sp. RUH2624] Length = 361 Score = 356 bits (913), Expect = 3e-96, Method: Compositional matrix adjust. Identities = 169/365 (46%), Positives = 244/365 (66%), Gaps = 11/365 (3%) Query: 6 LIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ 65 + Y QQL K+DR+ F P L++F S H+RMRAEF IWH D+++ MF++ Sbjct: 1 MTSSYRQQLQAKIDRITTQFSEFTPPTLEVFESPEQHFRMRAEFRIWHTESDMFYAMFER 60 Query: 66 QTKER----MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTL 121 +++ +RID F IN LM ++A ++ EPLL +LF++D+L + S + +VTL Sbjct: 61 NDEDKQKTVVRIDEFPIADKSINDLMPSLLAELKAEPLLSQRLFEVDFLATLSGEMLVTL 120 Query: 122 IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYR 181 IYHR L+ W + A L A K I+++GR+ K+ + D+V E ++ RT Y+ Sbjct: 121 IYHRKLNQEWEQSAKAL-----AEKLNIKIMGRSRGQKVVIGDDFVVEEFELSNRTFKYK 175 Query: 182 QIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241 QIE+SFTQPNA + ML+W A +G + LLELYCGNGNF+L L+ F+RVLA E+AK Sbjct: 176 QIESSFTQPNAQVCKKMLQWACDAAEGSKKHLLELYCGNGNFTLPLSLKFERVLATELAK 235 Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDP 299 SV AA++NI N ++N+++ R+S++EFTQA + EREF RL++ IDI SY F T+FVDP Sbjct: 236 SSVYAAQWNIEQNQIDNIQVARLSAEEFTQAYQGEREFRRLQEANIDIRSYDFDTVFVDP 295 Query: 300 PRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359 PR+G+DD T+ ++Q + I+YISCNPD+L +L L+ TH + + ALFDQFPYT H+E G Sbjct: 296 PRAGIDDETLKLLQGFERIIYISCNPDTLYENLKTLTKTHRVTKFALFDQFPYTHHVESG 355 Query: 360 VLLVR 364 VLL + Sbjct: 356 VLLEK 360 >gi|117617414|gb|ABK51296.1| BryS [Candidatus Endobugula sertula] Length = 365 Score = 355 bits (912), Expect = 4e-96, Method: Compositional matrix adjust. Identities = 171/362 (47%), Positives = 247/362 (68%), Gaps = 9/362 (2%) Query: 8 DQYEQQLAEKV----DRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63 DQY+QQL KV D+L Q+ V ++ ++ S +YRMRAEF +WH G+ ++ M+ Sbjct: 9 DQYQQQLDNKVNIFKDQLTQLNHNMNVDHIAVYNSPHCYYRMRAEFKVWHTGNTSHYAMY 68 Query: 64 DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIY 123 D+ KE + ++ F + IN LM +MA I +LR KLFQI++LT+Q++ +V+LIY Sbjct: 69 DKNKKEPVFLEKFPVAAQSINQLMPLVMAEITQHEMLRKKLFQIEFLTTQTNDTLVSLIY 128 Query: 124 HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQI 183 H+ L++ W ++D L I +IGR+ K K+ LDRD+V+E LTV G+ Y+Q Sbjct: 129 HKSLNEQWVHTISPIKDKL-----GINIIGRSRKQKMILDRDFVNEELTVNGKIFYYQQN 183 Query: 184 ENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 E SFTQPNA + ML W + +K GDLLELYCGNGNF+L L+++F+RV+A E++K S Sbjct: 184 EGSFTQPNAKVCEKMLAWAVNNSKNNHGDLLELYCGNGNFTLPLSQNFNRVIATEVSKSS 243 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 V +A+ NI N+++NV I+RMSS++F+ A+ + R F RLK+ D+ SY F T+FVDPPR+G Sbjct: 244 VHSAQKNIQKNNIDNVSILRMSSEDFSLAIDKIRPFRRLKEYDLESYHFSTVFVDPPRAG 303 Query: 304 LDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363 LDD T+ M++ + +I+YISCNP +L +L L TH IE LA FDQFPYT H+E GV+L Sbjct: 304 LDDGTIEMIKRFENIIYISCNPKTLINNLDSLCRTHNIEALAAFDQFPYTEHLEAGVILK 363 Query: 364 RK 365 +K Sbjct: 364 KK 365 >gi|313667944|ref|YP_004048228.1| tRNA (uracil-5-)-methyltransferase [Neisseria lactamica ST-640] gi|313005406|emb|CBN86840.1| tRNA (uracil-5-)-methyltransferase [Neisseria lactamica 020-06] Length = 367 Score = 355 bits (912), Expect = 5e-96, Method: Compositional matrix adjust. Identities = 175/368 (47%), Positives = 243/368 (66%), Gaps = 11/368 (2%) Query: 7 IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66 ++ Y QQL +K DRL+ + VP +++ S HYRMRAEF IWH+G ++++ MF++ Sbjct: 1 MNDYTQQLQDKKDRLKTLFADLDVPEWEVYESPDKHYRMRAEFRIWHEGGEMFYAMFEKG 60 Query: 67 TKER----MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122 K +R D F S +N LM E++A LR + + +++L++ + +VT+I Sbjct: 61 QKAGGASLIRCDRFDAASEAVNRLMPELIALAAQSAELRNRWYAVEFLSTLGGEMLVTMI 120 Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182 YH+ LDD W IR AL ++ I +IGR+ KI L +DYV E L V R YRQ Sbjct: 121 YHKRLDDEW----IRAAQALQ-QQLDISVIGRSRGQKIVLKQDYVTETLKVGNRDFRYRQ 175 Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 IE SFTQPNA + MLEW A +G+ GDLLELYCGNGNF+L L+ F+RVLA EI+K Sbjct: 176 IEGSFTQPNAAVCQKMLEWACGAAEGLDGDLLELYCGNGNFTLPLSEKFERVLATEISKT 235 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPP 300 SV AA++NI AN + N+KI R+S++EFT+A +REF RLK+ I + Y F TIFVDPP Sbjct: 236 SVSAAQWNIEANRIGNIKITRLSAEEFTEAYTGKREFKRLKEGGIALADYAFSTIFVDPP 295 Query: 301 RSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360 R+G+D T+ +V + +I+YISCNP++L +L L+ THT+ER ALFDQFP+T H+E GV Sbjct: 296 RAGIDGETLKLVSQFDNIIYISCNPETLRANLDTLAQTHTVERAALFDQFPFTPHIESGV 355 Query: 361 LLVRKPSG 368 LL +K G Sbjct: 356 LLKKKILG 363 >gi|261378870|ref|ZP_05983443.1| tRNA (uracil-5-)-methyltransferase [Neisseria cinerea ATCC 14685] gi|269144685|gb|EEZ71103.1| tRNA (uracil-5-)-methyltransferase [Neisseria cinerea ATCC 14685] Length = 367 Score = 355 bits (910), Expect = 8e-96, Method: Compositional matrix adjust. Identities = 173/365 (47%), Positives = 241/365 (66%), Gaps = 11/365 (3%) Query: 7 IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66 ++ Y QQL K D L+ + VP +++ S HYRMRAEF IWH+G ++++ MF++ Sbjct: 1 MNDYTQQLQGKKDYLKTLFAGLDVPEWEVYESPDKHYRMRAEFRIWHEGGEMFYAMFEKG 60 Query: 67 TKER----MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122 K +R D F S +N LM E++A LR + + +++L++ S + +VT+I Sbjct: 61 QKASGASLIRCDRFDAASEAVNCLMPELIAVAAQSAELRNRWYAVEFLSTLSGEMLVTMI 120 Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182 YH+ LDD W IR AL ++ I +IGR+ KI L +DYV E L V R YRQ Sbjct: 121 YHKRLDDEW----IRAAQALQ-QQLDISVIGRSRGQKIVLKQDYVTETLKVGNRDFHYRQ 175 Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 IE FTQPNA + MLEW A +G+ GDLLELYCGNGNF+L L+ F+RVLA EI+K Sbjct: 176 IEGGFTQPNAAVCQKMLEWACGAAEGLGGDLLELYCGNGNFTLPLSEKFERVLATEISKT 235 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPP 300 SV AA++NI AN + N+KI R+S++EFT+A +REF RLK+ I + Y F TIFVDPP Sbjct: 236 SVGAAQWNIEANGIGNIKIARLSAEEFTEAYTGKREFTRLKEGGIALTDYAFSTIFVDPP 295 Query: 301 RSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360 R+G+D+ T+ +V + +I+YISCNP++L +L L+ THT+ER ALFDQFP+T H+E GV Sbjct: 296 RAGIDEETLKLVSQFDNIIYISCNPETLRANLDTLAETHTVERAALFDQFPFTHHIESGV 355 Query: 361 LLVRK 365 LL +K Sbjct: 356 LLKKK 360 >gi|78484518|ref|YP_390443.1| tRNA (uracil-5-)-methyltransferase [Thiomicrospira crunogena XCL-2] gi|123755299|sp|Q31JA4|TRMA_THICR RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|78362804|gb|ABB40769.1| tRNA (uracil-5-)-methyltransferase [Thiomicrospira crunogena XCL-2] Length = 374 Score = 355 bits (910), Expect = 8e-96, Method: Compositional matrix adjust. Identities = 187/373 (50%), Positives = 243/373 (65%), Gaps = 21/373 (5%) Query: 8 DQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQT 67 + Y +Q AEK RL Q++ +PN F SEP HYR RAEF +WH+GD +IMFDQQ+ Sbjct: 8 ETYAEQFAEKTHRLEQLL--GDLPNFDAFASEPEHYRARAEFRVWHEGDQTDYIMFDQQS 65 Query: 68 KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLL 127 KE++ I + I LM ++MA I P+LR KLFQ+D+L + S + +VTLIY + L Sbjct: 66 KEKVAIHHCPMALESIATLMPKLMAHIVQTPVLRQKLFQVDFLATLSGEMLVTLIYRKSL 125 Query: 128 ----------DDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRT 177 D AW + A LR L +IGRA K KICLD+DYV E+L V +T Sbjct: 126 QTKTETGVENDVAWVDAANALRCELPI----THIIGRARKQKICLDKDYVIEKLQVDHQT 181 Query: 178 LIYRQIENSFTQPNAGINVHMLEWV----LAATKGIQGDLLELYCGNGNFSLVLARHFDR 233 IY+QIENSFTQPNA + +ML W A Q DL+ELYCGNG+FS+ L+ F R Sbjct: 182 FIYQQIENSFTQPNAEMAQNMLHWARKVAAKANPDQQNDLIELYCGNGHFSIALSDQFHR 241 Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293 VLA EI+K SV +A++NI AN V+NV +V+M+++E + A++ E F RLKDID+ +Y F Sbjct: 242 VLATEISKTSVASAQFNIEANKVDNVTVVKMAAEEISAALQGET-FFRLKDIDLSAYAFN 300 Query: 294 TIFVDPPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYT 353 TIFVDPPRSGLDD T MV + +I+YISCNP++L DL + TH + ALFDQFPYT Sbjct: 301 TIFVDPPRSGLDDLTRQMVTEFDYIIYISCNPETLAHDLEAIRQTHEVLETALFDQFPYT 360 Query: 354 RHMECGVLLVRKP 366 H+E GV L RKP Sbjct: 361 HHIESGVFLKRKP 373 >gi|121624856|gb|ABM63534.1| BryS [Candidatus Endobugula sertula] Length = 365 Score = 354 bits (908), Expect = 1e-95, Method: Compositional matrix adjust. Identities = 170/362 (46%), Positives = 246/362 (67%), Gaps = 9/362 (2%) Query: 8 DQYEQQLAEKV----DRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63 DQY+QQ KV D+L+Q+ V ++ ++ S +YRMRAEF +WH G+ ++ M+ Sbjct: 9 DQYQQQPDNKVNIFKDQLKQLNHNMNVDHIAVYSSPNCYYRMRAEFKVWHTGNTSHYAMY 68 Query: 64 DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIY 123 D+ KE + ++ F + IN LM +MA I +LR KLFQI++LT+Q++ +V+LIY Sbjct: 69 DKNKKEPVFLEKFPVAAQSINQLMPLVMAEITQHEMLRKKLFQIEFLTTQTNDTLVSLIY 128 Query: 124 HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQI 183 H+ L++ W ++D L I +IGR+ K K+ LDRD+V+E LTV G+ Y+Q Sbjct: 129 HKSLNEQWVHTISPIKDKL-----GINIIGRSRKQKMILDRDFVNEELTVNGKIFYYQQN 183 Query: 184 ENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 E SFTQPNA + ML W + +K GDLLELYCGNGNF+L L+++F+RV+A E++K S Sbjct: 184 EGSFTQPNAKVCEKMLAWAVNNSKNNHGDLLELYCGNGNFTLPLSQNFNRVIATEVSKSS 243 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 V +A+ NI N+++NV I+RMSS++F+ A+ + R F RLK D+ SY F T+FVDPPR+G Sbjct: 244 VHSAQKNIKKNNIDNVSILRMSSEDFSLAIDKIRPFRRLKKYDLESYHFSTVFVDPPRAG 303 Query: 304 LDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363 LDD T+ M++ + +I+YISCNP +L +L L TH IE LA FDQFPYT H+E GV+L Sbjct: 304 LDDGTIEMIKRFENIIYISCNPKTLINNLDSLCRTHNIEALAAFDQFPYTEHLEAGVILK 363 Query: 364 RK 365 +K Sbjct: 364 KK 365 >gi|262278877|ref|ZP_06056662.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter calcoaceticus RUH2202] gi|262259228|gb|EEY77961.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter calcoaceticus RUH2202] Length = 361 Score = 354 bits (908), Expect = 1e-95, Method: Compositional matrix adjust. Identities = 172/365 (47%), Positives = 241/365 (66%), Gaps = 11/365 (3%) Query: 6 LIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF-- 63 + Y QQL K+DR+ F P L++F S H+RMRAEF IWH +D+++ MF Sbjct: 1 MTSSYHQQLQTKIDRITAQFSEFTPPTLEVFESPEQHFRMRAEFRIWHTENDMFYAMFER 60 Query: 64 --DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTL 121 D + K +RID F IN LM +++ ++ EP L ++LF+ D+L + S + +VTL Sbjct: 61 NDDDKQKTVLRIDEFPIADQSINDLMPKLLEELKAEPKLSSRLFEADFLATLSGEMLVTL 120 Query: 122 IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYR 181 IYHR LD W + A L A K I+++GR+ KI + D+V E + R+ Y+ Sbjct: 121 IYHRKLDQEWEQAAKAL-----AEKLDIKIMGRSRGQKIIIGDDFVVEEFELLNRSFKYK 175 Query: 182 QIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241 QIE+SFTQPNA + ML+W A +G + LLELYCGNGNF+L L+ F+RVLA E+AK Sbjct: 176 QIESSFTQPNAQVCKKMLQWACDAAEGSKKHLLELYCGNGNFTLPLSLKFERVLATELAK 235 Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDP 299 SV AA++NI N ++N+++ R+S++EFTQA + EREF RL++ IDI SY F T+FVDP Sbjct: 236 SSVYAAQWNIEQNQIDNIQVARLSAEEFTQAYQGEREFRRLQEANIDIQSYDFDTVFVDP 295 Query: 300 PRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359 PR+G+DD T+ ++Q + I+YISCNPD+L +L IL TH I + ALFDQFPYT H+E G Sbjct: 296 PRAGIDDETLKLLQGFERIIYISCNPDTLYENLKILGLTHRITKFALFDQFPYTHHVESG 355 Query: 360 VLLVR 364 VLL + Sbjct: 356 VLLEK 360 >gi|225075787|ref|ZP_03718986.1| hypothetical protein NEIFLAOT_00803 [Neisseria flavescens NRL30031/H210] gi|224952869|gb|EEG34078.1| hypothetical protein NEIFLAOT_00803 [Neisseria flavescens NRL30031/H210] Length = 360 Score = 353 bits (907), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 169/362 (46%), Positives = 245/362 (67%), Gaps = 11/362 (3%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69 Y+QQLA+K L+Q+ P +++F S HYRMRAEF IWH+G ++++ MF++ K Sbjct: 4 YQQQLADKKQYLQQLFQGLDCPEIEVFESPEQHYRMRAEFRIWHEGGEMFYAMFERGQKA 63 Query: 70 R----MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHR 125 +R D F S +NALM +++ P L+ + + +++L++ S + +VT+IYH+ Sbjct: 64 SGASLIRCDQFPAASESVNALMPKLIEAASNHPELKNRWYAVEFLSTLSGEMLVTMIYHK 123 Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIEN 185 L++AW++ A L A I +IGR+ KI L +D+V E L V G+T YRQIE Sbjct: 124 KLNEAWQQAAQEL-----AHNLGIHIIGRSRGQKIVLSQDFVTEALEVNGKTFRYRQIEG 178 Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 SFTQPNA + ML W A + + DLLELYCGNGNF+L L++HF++VLA E++K SV Sbjct: 179 SFTQPNAQVCQKMLTWACDAAQNLGKDLLELYCGNGNFTLPLSQHFNQVLATEVSKTSVN 238 Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSG 303 AA++NI AN + N+KI R+S++EFT+A + REF RL++ ID+ +Y F TIFVDPPR+G Sbjct: 239 AAQWNIEANQITNLKIARLSAEEFTEAYTQNREFRRLQEQGIDLKNYDFSTIFVDPPRAG 298 Query: 304 LDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363 +DD T+ +V + ++LYISCNP++L +L L THTIER ALFDQFP+T H+E GV L Sbjct: 299 VDDETLKLVAQFDNVLYISCNPETLRANLDTLCQTHTIERAALFDQFPFTHHIESGVWLK 358 Query: 364 RK 365 +K Sbjct: 359 KK 360 >gi|319637755|ref|ZP_07992521.1| tRNA (uracil-5-)-methyltransferase [Neisseria mucosa C102] gi|317400910|gb|EFV81565.1| tRNA (uracil-5-)-methyltransferase [Neisseria mucosa C102] Length = 361 Score = 353 bits (907), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 169/362 (46%), Positives = 244/362 (67%), Gaps = 11/362 (3%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69 Y+QQLA+K L+Q+ P +++F S HYRMRAEF IWH+G ++++ MF++ K Sbjct: 4 YQQQLADKKQYLQQLFQGLDFPEIEVFESPEQHYRMRAEFRIWHEGGEMFYAMFERGQKA 63 Query: 70 R----MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHR 125 +R D F S INALM +++ P L+ + + +++L++ S + +VT+IYH+ Sbjct: 64 SGASLIRCDQFPAASESINALMPKLIEAASNHPELKNRWYAVEFLSTLSGEMLVTMIYHK 123 Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIEN 185 L++AW++ L A I +IGR+ KI L +D+V E L V G+T YRQIE Sbjct: 124 KLNEAWQQATQEL-----AHNLGIHIIGRSRGQKIVLSQDFVTEALEVNGKTFCYRQIEG 178 Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 SFTQPNA + ML W A + + DLLELYCGNGNF+L L++HF++VLA E++K SV Sbjct: 179 SFTQPNAQVCQKMLTWACNAAQNLGKDLLELYCGNGNFTLPLSQHFNQVLATEVSKTSVN 238 Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSG 303 AA++NI AN + N+KI R+S++EFT+A + REF RL++ ID+ +Y F TIFVDPPR+G Sbjct: 239 AAQWNIEANQITNLKIARLSAEEFTEAYTQNREFRRLQEQGIDLKNYDFSTIFVDPPRAG 298 Query: 304 LDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363 +DD T+ +V + ++LYISCNP++L +L L THTIER ALFDQFP+T H+E GV L Sbjct: 299 VDDETLKLVARFDNVLYISCNPETLRANLDTLCQTHTIERAALFDQFPFTHHIESGVWLK 358 Query: 364 RK 365 +K Sbjct: 359 KK 360 >gi|261399937|ref|ZP_05986062.1| tRNA (uracil-5-)-methyltransferase [Neisseria lactamica ATCC 23970] gi|269210388|gb|EEZ76843.1| tRNA (uracil-5-)-methyltransferase [Neisseria lactamica ATCC 23970] Length = 367 Score = 353 bits (905), Expect = 3e-95, Method: Compositional matrix adjust. Identities = 174/368 (47%), Positives = 241/368 (65%), Gaps = 11/368 (2%) Query: 7 IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66 + Y QQL +K DRL+ + VP +++ S HYRMRAEF IWH+G ++++ MF++ Sbjct: 1 MSDYTQQLQDKKDRLKTLFAGLDVPEWEVYESLDKHYRMRAEFRIWHEGGEMFYAMFEKG 60 Query: 67 TKER----MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122 K +R D F S +N LM E++A LR + + +++L++ + +VT+I Sbjct: 61 QKAGGASLIRCDRFDAASEAVNRLMPELIALAAQSAELRNRWYAVEFLSTLGGEMLVTMI 120 Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182 YH+ LDD W IR AL ++ I +IGR+ KI L +DYV E L V R YRQ Sbjct: 121 YHKRLDDEW----IRAAQALQ-QQLDISVIGRSRGQKIVLKQDYVTETLKVGNRDFHYRQ 175 Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 IE FTQPNA + MLEW A +G+ GDLLELYCGNGNF+L L+ F+RVLA EI+K Sbjct: 176 IEGGFTQPNAAVCQKMLEWACGAAEGLGGDLLELYCGNGNFTLPLSEKFERVLATEISKT 235 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPP 300 SV AA++NI AN + N+KI R+S++EFT+A +REF RLK+ I + Y F TIFVDPP Sbjct: 236 SVGAAQWNIEANGIGNIKIARLSAEEFTEAYTGKREFKRLKEGGIALADYAFSTIFVDPP 295 Query: 301 RSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360 R+G+D T+ +V + +I+YISCNP++L +L L+ THT+ER ALFDQFP+T H+E GV Sbjct: 296 RAGIDGETLKLVSQFDNIIYISCNPETLRANLDTLAQTHTVERAALFDQFPFTPHIESGV 355 Query: 361 LLVRKPSG 368 LL +K G Sbjct: 356 LLKKKILG 363 >gi|241760255|ref|ZP_04758350.1| tRNA-methyltransferase [Neisseria flavescens SK114] gi|241319133|gb|EER55611.1| tRNA-methyltransferase [Neisseria flavescens SK114] Length = 360 Score = 353 bits (905), Expect = 3e-95, Method: Compositional matrix adjust. Identities = 170/362 (46%), Positives = 244/362 (67%), Gaps = 11/362 (3%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69 Y+QQLA+K L+Q+ P +++F S HYRMRAEF IWH+G ++++ MF++ K Sbjct: 4 YQQQLADKKQYLQQLFQGLDFPEIEVFESPEQHYRMRAEFRIWHEGGEMFYAMFERGQKA 63 Query: 70 R----MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHR 125 +R D F S INALM +++ P L+ + + +++L++ S + +VT+IYH+ Sbjct: 64 SGASLIRCDQFPAASESINALMPKLIEAASNHPELKNRWYAVEFLSTLSGEMLVTMIYHK 123 Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIEN 185 L++AW++ A L A I +IGR+ KI L +D+V E L V G+T YRQIE Sbjct: 124 KLNEAWQQAAQEL-----AHNLGIHIIGRSRGQKIVLSQDFVTEALEVNGKTFRYRQIEG 178 Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 SFTQPNA + ML W A + + DLLELYCGNGNF+L L++HF +VLA E++K SV Sbjct: 179 SFTQPNAQVCQKMLTWACDAAQNLGKDLLELYCGNGNFTLPLSQHFTQVLATEVSKTSVN 238 Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSG 303 AA++NI AN + N+KI R+S++EFT+A + REF RL++ ID+ +Y F TIFVDPPR+G Sbjct: 239 AAQWNIEANQITNLKIARLSAEEFTEAYTQNREFRRLQEQGIDLKNYDFSTIFVDPPRAG 298 Query: 304 LDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363 +DD T+ +V + ++LYISCNP++L +L L THTIER ALFDQFP+T H+E GV L Sbjct: 299 VDDETLKLVARFDNVLYISCNPETLRTNLDTLCQTHTIERAALFDQFPFTHHIESGVWLK 358 Query: 364 RK 365 +K Sbjct: 359 KK 360 >gi|299770439|ref|YP_003732465.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter sp. DR1] gi|298700527|gb|ADI91092.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter sp. DR1] Length = 361 Score = 353 bits (905), Expect = 3e-95, Method: Compositional matrix adjust. Identities = 171/365 (46%), Positives = 241/365 (66%), Gaps = 11/365 (3%) Query: 6 LIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF-- 63 + Y QQL K+DR+ F P L++F S H+RMRAEF IWH +D+++ MF Sbjct: 1 MTSSYHQQLQTKIDRITAQFSEFTPPTLEVFESPEQHFRMRAEFRIWHTENDMFYAMFER 60 Query: 64 --DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTL 121 D + K +RID F IN LM +++ ++ EP L +++F+ D+L + S + +VTL Sbjct: 61 NDDDKQKTVVRIDEFPIADQSINDLMPKLLEELKAEPKLSSRIFEADFLATLSGEMLVTL 120 Query: 122 IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYR 181 IYHR LD W + A L A K I+++GR+ KI + D+V E + R+ Y+ Sbjct: 121 IYHRKLDQEWEQAAKAL-----AEKLDIKIMGRSRGQKIIIGNDFVVEEFELLNRSFKYK 175 Query: 182 QIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241 QIE+SFTQPNA + ML+W A +G + LLELYCGNGNF+L L+ F+RVLA E+AK Sbjct: 176 QIESSFTQPNAQVCKKMLQWACDAAEGSKKHLLELYCGNGNFTLPLSLKFERVLATELAK 235 Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDP 299 SV AA++NI N ++N+++ R+S++EFTQA + EREF RL++ IDI SY F T+FVDP Sbjct: 236 SSVYAAQWNIEQNQIDNIQVARLSAEEFTQAYQGEREFRRLQEANIDIQSYDFDTVFVDP 295 Query: 300 PRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359 PR+G+DD T+ ++Q + I+YISCNPD+L +L IL TH I + ALFDQFPYT H+E G Sbjct: 296 PRAGIDDETLKLLQGFERIIYISCNPDTLYENLKILGLTHRITKFALFDQFPYTHHVESG 355 Query: 360 VLLVR 364 VLL + Sbjct: 356 VLLEK 360 >gi|293608290|ref|ZP_06690593.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292828863|gb|EFF87225.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 361 Score = 352 bits (904), Expect = 4e-95, Method: Compositional matrix adjust. Identities = 171/365 (46%), Positives = 241/365 (66%), Gaps = 11/365 (3%) Query: 6 LIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF-- 63 + Y QQL K++R+ F P L++F S H+RMRAEF IWH +D+++ MF Sbjct: 1 MTSSYRQQLQAKIERITTQFSEFTPPTLEVFESPEQHFRMRAEFRIWHTENDMFYAMFER 60 Query: 64 --DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTL 121 D + K +RID F IN LM +++ ++ EP L +LF+ D+L + S + +VTL Sbjct: 61 NDDDKQKTVVRIDEFPIADQSINDLMPKLLEELKAEPKLSNRLFEADFLATLSGEMLVTL 120 Query: 122 IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYR 181 IYHR LD W + A L A K I+++GR+ KI + D+V E + R+ Y+ Sbjct: 121 IYHRKLDQEWEQAAKAL-----AYKLDIKIMGRSRGQKIVIGDDFVVEEFELLNRSFKYK 175 Query: 182 QIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241 QIE+SFTQPNA + ML+W A +G + LLELYCGNGNF+L L+ F+RVLA E+AK Sbjct: 176 QIESSFTQPNAQVCKKMLQWACDAAEGSKKHLLELYCGNGNFTLPLSLKFERVLATELAK 235 Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDP 299 SV AA++NI N ++N+++ R+S++EFTQA + EREF RL++ IDI SY F T+FVDP Sbjct: 236 SSVYAAQWNIEQNQIDNIQVARLSAEEFTQAYQGEREFRRLQEANIDIQSYDFDTVFVDP 295 Query: 300 PRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359 PR+G+DD T+ ++Q + HI+YISCNPD+L +L LS TH + + ALFDQFPYT H+E G Sbjct: 296 PRAGIDDETLKLLQGFEHIIYISCNPDTLYENLKTLSQTHRLTKFALFDQFPYTHHVESG 355 Query: 360 VLLVR 364 VLL + Sbjct: 356 VLLEK 360 >gi|254785733|ref|YP_003073162.1| tRNA (uracil-5-)-methyltransferase [Teredinibacter turnerae T7901] gi|259547835|sp|C5BTY4|TRMA_TERTT RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|237686461|gb|ACR13725.1| tRNA-methyltransferase [Teredinibacter turnerae T7901] Length = 364 Score = 352 bits (902), Expect = 7e-95, Method: Compositional matrix adjust. Identities = 177/366 (48%), Positives = 239/366 (65%), Gaps = 8/366 (2%) Query: 3 GTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDD---LY 59 G+ + Y+ Q +EK++R R F + FRS YRMRAEF IWHD D Y Sbjct: 4 GSAPTETYDVQFSEKIERTRDQFKDFFNGEIDAFRSPASEYRMRAEFKIWHDKDTGRACY 63 Query: 60 HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119 + + + + I+ F GS I LM +++A + LL+ KLFQI++LT+ S A+V Sbjct: 64 AMHQPKVKNQVIPIEDFEIGSARIRELMPDVLAAVNNSTLLKQKLFQIEFLTATSGDAVV 123 Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179 +LIYHR L + W+ A +L+ L + QLIGR+ K KI L RDYV E L V ++ Sbjct: 124 SLIYHRPLSEQWQAEAEQLQSTL-----RCQLIGRSRKQKIALGRDYVLETLLVNDKSYT 178 Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEI 239 Y+Q+E FTQPNA + ML W + I GDLLELYCGNGNF+L LA++F RVLA E+ Sbjct: 179 YQQVETGFTQPNAAVCQKMLTWAQTVSADIGGDLLELYCGNGNFTLPLAQNFSRVLATEV 238 Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299 +K SV++A YNI N N+ I R+SS+EFT+AM + R F RL++ID+ SY+F TIFVDP Sbjct: 239 SKTSVKSALYNIEQNGATNIAIARLSSEEFTEAMNKVRRFRRLENIDLDSYQFSTIFVDP 298 Query: 300 PRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359 PR+GLD TV + + +I+YISCNPD+L +L+ L+TTH + RLALFDQFPYT H ECG Sbjct: 299 PRAGLDTDTVKLASRFDNIIYISCNPDTLADNLASLATTHEVTRLALFDQFPYTEHRECG 358 Query: 360 VLLVRK 365 V+L R+ Sbjct: 359 VILRRR 364 >gi|254805435|ref|YP_003083656.1| tRNA (uracil-5-)-methyltransferase [Neisseria meningitidis alpha14] gi|254668977|emb|CBA07299.1| tRNA (uracil-5-)-methyltransferase [Neisseria meningitidis alpha14] Length = 362 Score = 351 bits (900), Expect = 1e-94, Method: Compositional matrix adjust. Identities = 170/365 (46%), Positives = 238/365 (65%), Gaps = 11/365 (3%) Query: 7 IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66 + Y QQL +K D L+ + VP +++ S HYRMRAEF IWH+G ++++ MF++ Sbjct: 1 MSDYTQQLQDKKDHLKTLFAGLDVPEWEVYESPDKHYRMRAEFRIWHEGGEMFYAMFEKG 60 Query: 67 TKER----MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122 K +R D F S +N LM E++A LR + + +++L++ S + +VT+I Sbjct: 61 QKAGGASLIRCDRFEAASEAVNRLMPELIAVAAQSAELRNRWYAVEFLSTLSGEMLVTMI 120 Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182 YH+ LD+ W ++ I +IGR+ KI L +DYV E L V R YRQ Sbjct: 121 YHKRLDNEWM-----QAAQALQQQLDISVIGRSRGQKIVLKQDYVTETLKVGNRDFRYRQ 175 Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 IE SFTQPNA + MLEW A +G+ GDLLELYCGNGNF+L L+ F+RVLA EI+K Sbjct: 176 IEGSFTQPNAAVCQKMLEWACGAAEGLDGDLLELYCGNGNFTLPLSEKFERVLATEISKT 235 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPP 300 SV AA++NI AN + N+KI R+S++EFT+A R+REF RLKD I + Y F TIFVDPP Sbjct: 236 SVSAAQWNIEANRIGNIKIARLSAEEFTEAYTRKREFKRLKDGGIALTDYAFSTIFVDPP 295 Query: 301 RSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360 R+G+D+ T+ +V + +I+YISCNP++L +L L+ TH +ER ALFDQFP+T H+E GV Sbjct: 296 RAGIDEETLKLVSQFDNIIYISCNPETLRANLDTLAETHAVERAALFDQFPFTHHIESGV 355 Query: 361 LLVRK 365 LL +K Sbjct: 356 LLKKK 360 >gi|121635320|ref|YP_975565.1| tRNA (uracil-5-)-methyltransferase [Neisseria meningitidis FAM18] gi|262827905|sp|A1KV88|TRMA_NEIMF RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|262831406|sp|A9M1Q1|TRMA_NEIM0 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|120867026|emb|CAM10789.1| tRNA (uracil-5-)-methyltransferase [Neisseria meningitidis FAM18] gi|325132825|gb|EGC55505.1| tRNA (uracil-5-)-methyltransferase [Neisseria meningitidis M6190] gi|325138728|gb|EGC61280.1| tRNA (uracil-5-)-methyltransferase [Neisseria meningitidis ES14902] gi|325198777|gb|ADY94233.1| tRNA (uracil-5-)-methyltransferase [Neisseria meningitidis G2136] Length = 367 Score = 350 bits (899), Expect = 1e-94, Method: Compositional matrix adjust. Identities = 172/368 (46%), Positives = 241/368 (65%), Gaps = 11/368 (2%) Query: 7 IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66 + Y QQL +K D L+ + VP +++ S HYRMRAEF IWH+G ++++ MF++ Sbjct: 1 MSDYTQQLQDKKDHLKTLFAGLDVPEWEVYESPDKHYRMRAEFRIWHEGGEMFYAMFEKG 60 Query: 67 TKER----MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122 K +R D F S +N LM E++A LR + + +++L++ S + +VT+I Sbjct: 61 QKAGGASLIRCDRFEAASEAVNRLMPELIAVAAQSAELRNRWYAVEFLSTLSGEMLVTMI 120 Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182 YH+ LD+ W + A ++ I +IGR+ KI L +DYV E L V R YRQ Sbjct: 121 YHKRLDNEWMQAA-----QALQQQLDISVIGRSRGQKIVLKQDYVTETLKVGNRDFRYRQ 175 Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 IE SFTQPNA + MLEW A +G+ GDLLELYCGNGNF+L L+ F+RVLA EI+K Sbjct: 176 IEGSFTQPNAAVCQKMLEWACGAAEGLDGDLLELYCGNGNFTLPLSEKFERVLATEISKT 235 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPP 300 SV AA++NI AN + N+KI R+S++EFT+A +REF RLKD I + Y F TIFVDPP Sbjct: 236 SVSAAQWNIEANRIGNIKIARLSAEEFTEAYTGKREFKRLKDGGIALTDYAFSTIFVDPP 295 Query: 301 RSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360 R+G+D+ T+ +V + +I+YISCNP++L +L L+ THT+ER ALFDQFP+T H+E GV Sbjct: 296 RAGIDEETLKLVSQFDNIIYISCNPETLRTNLDTLAETHTVERAALFDQFPFTHHIESGV 355 Query: 361 LLVRKPSG 368 LL +K G Sbjct: 356 LLKKKILG 363 >gi|325130700|gb|EGC53439.1| tRNA (uracil-5-)-methyltransferase [Neisseria meningitidis OX99.30304] gi|325136672|gb|EGC59272.1| tRNA (uracil-5-)-methyltransferase [Neisseria meningitidis M0579] gi|325201664|gb|ADY97118.1| tRNA (uracil-5-)-methyltransferase [Neisseria meningitidis M01-240149] gi|325208601|gb|ADZ04053.1| tRNA (uracil-5-)-methyltransferase [Neisseria meningitidis NZ-05/33] Length = 362 Score = 350 bits (899), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 169/365 (46%), Positives = 237/365 (64%), Gaps = 11/365 (3%) Query: 7 IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66 ++ Y QQL K D L+ + VP +++ S HYRMRAEF IWH+G ++++ MF++ Sbjct: 1 MNDYTQQLQGKKDYLKTLFAGLDVPEWEVYESPDKHYRMRAEFRIWHEGGEMFYAMFEKG 60 Query: 67 TKER----MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122 K +R D F S +N LM E++A P L+ + + +++L++ S + +VT+I Sbjct: 61 QKASGASMIRCDRFEAASEAVNRLMPELIAAAAQSPELKKRWYAVEFLSTLSGEMLVTMI 120 Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182 YH+ LD W ++ I +IGR+ KI L +DYV E L V R YRQ Sbjct: 121 YHKRLDAEWM-----QAAQALQQQLDISVIGRSRGQKIVLKQDYVTETLKVGNRDFRYRQ 175 Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 IE SFTQPNA + MLEW A +G+ GDLLELYCGNGNF+L L+ F+RVLA EI+K Sbjct: 176 IEGSFTQPNAAVCQKMLEWACGAAEGLDGDLLELYCGNGNFTLPLSEKFERVLATEISKT 235 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPP 300 S+ AA++NI AN + N+KI R+S++EFT+A R+REF RLKD I + Y F TIFVDPP Sbjct: 236 SISAAQWNIEANRIGNIKIARLSAEEFTEAYTRKREFKRLKDGGIALTDYAFSTIFVDPP 295 Query: 301 RSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360 R+G+D+ T+ +V + +I+YISCNP++L +L L TH +ER ALFDQFP+T H+E GV Sbjct: 296 RAGIDEETLKLVSQFDNIIYISCNPETLRANLDTLVETHAVERAALFDQFPFTHHIESGV 355 Query: 361 LLVRK 365 LL +K Sbjct: 356 LLKKK 360 >gi|213051818|ref|ZP_03344696.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] Length = 262 Score = 350 bits (898), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 168/257 (65%), Positives = 201/257 (78%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L +QYE QLAEKV RL+ MM F ++FRS HYRMRAEF +WHDGD+LYHIMFD Sbjct: 6 LPTEQYEAQLAEKVARLQSMMAPFSGLVPEVFRSPVSHYRMRAEFRLWHDGDNLYHIMFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTK R+R+D F S LIN LM M+A +R LR KLFQIDYLT+ S+QA+V+L+YH Sbjct: 66 QQTKSRIRVDTFPAASQLINTLMKAMIAGVRDNHALRHKLFQIDYLTTLSNQAVVSLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + LD+ WRE A LRDAL A+ + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E Sbjct: 126 KKLDEEWREAATALRDALRAQGLNVHLIGRATKTKIELDQDYIDERLPVAGKEIIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+ MLEW L TK +GDLLELYCGNGNFSL LAR+F+RVLA EIAKPSV Sbjct: 186 NSFTQPNAAMNIQMLEWALEVTKDSKGDLLELYCGNGNFSLALARNFNRVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKI 261 AA+YNIAANH++NV+I Sbjct: 246 AAAQYNIAANHIDNVQI 262 >gi|325121978|gb|ADY81501.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter calcoaceticus PHEA-2] Length = 361 Score = 350 bits (898), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 170/365 (46%), Positives = 240/365 (65%), Gaps = 11/365 (3%) Query: 6 LIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF-- 63 + Y QQL K++R+ F P L++F S H+RMRAEF IWH +D+++ MF Sbjct: 1 MTSSYRQQLQAKIERITTQFSEFTPPTLEVFESPEQHFRMRAEFRIWHTENDMFYAMFER 60 Query: 64 --DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTL 121 D + K +RID F IN LM +++ ++ EP L +LF+ D+L + S + +VTL Sbjct: 61 NDDDKQKTVVRIDEFPIADHSINDLMPKLLEELKAEPKLSNRLFEADFLATLSGEMLVTL 120 Query: 122 IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYR 181 IYHR LD W + A L D L I+++GR+ KI + D+V E + R+ Y+ Sbjct: 121 IYHRKLDQEWEQAAKALADKL-----DIKIMGRSRGQKIVIGDDFVVEEFELLNRSFKYK 175 Query: 182 QIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241 QIE+SFTQPNA + ML+W A +G + LLELYCGNGNF+L L+ F+RVLA E+AK Sbjct: 176 QIESSFTQPNAQVCKKMLQWACDAAEGSKKHLLELYCGNGNFTLPLSLKFERVLATELAK 235 Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDP 299 SV AA++NI N ++N+++ R+S++EFTQA + EREF RL++ IDI SY F T+FVDP Sbjct: 236 SSVYAAQWNIEQNQIDNIQVARLSAEEFTQAYQGEREFRRLQEANIDIQSYDFDTVFVDP 295 Query: 300 PRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359 PR+G+DD T+ ++Q + I+YISCNPD+L +L LS TH + + ALFDQFPYT H+E G Sbjct: 296 PRAGIDDETLKLLQGFERIIYISCNPDTLYENLKTLSQTHRVTKFALFDQFPYTHHVESG 355 Query: 360 VLLVR 364 VLL + Sbjct: 356 VLLEK 360 >gi|169796179|ref|YP_001713972.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter baumannii AYE] gi|262827608|sp|B0VCX5|TRMA_ACIBY RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|169149106|emb|CAM86983.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter baumannii AYE] Length = 361 Score = 350 bits (898), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 170/365 (46%), Positives = 240/365 (65%), Gaps = 11/365 (3%) Query: 6 LIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF-- 63 + Y QQL K+DR+ F P L++F S H+RMRAEF IWH +D+++ MF Sbjct: 1 MTSSYRQQLQAKIDRITTQFSEFTPPTLEVFESPEQHFRMRAEFRIWHTENDMFYAMFER 60 Query: 64 --DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTL 121 D + K +RID F IN LM ++A ++ LL +LF++D+L + S + +VTL Sbjct: 61 NGDGKQKTVVRIDEFPIADKSINDLMPLLLAELKANSLLSQRLFEVDFLATLSGEMLVTL 120 Query: 122 IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYR 181 IYHR L+ W + A L A K I+++GR+ KI + D+V E + R+ Y+ Sbjct: 121 IYHRKLNQEWEQAAKAL-----AEKLNIKIMGRSRGQKIVIGDDFVVEEFELLNRSFKYK 175 Query: 182 QIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241 QIE+SFTQPNA + ML+W A +G + LLELYCGNGNF+L L+ F+RVLA E+AK Sbjct: 176 QIESSFTQPNAQVCKKMLQWACDAAEGSKKHLLELYCGNGNFTLPLSLKFERVLATELAK 235 Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK--DIDIHSYRFKTIFVDP 299 SV AA++NI N ++N+++ R+S++EFTQA + EREF RL+ DIDI SY F T+FVDP Sbjct: 236 SSVYAAQWNIEQNQIDNIQVARLSAEEFTQAYQGEREFRRLQEADIDIQSYDFGTVFVDP 295 Query: 300 PRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359 PR+G+DD T+ ++Q + I+YISCNPD+L +L L+ TH + + ALFDQFPYT H+E G Sbjct: 296 PRAGIDDETLKLLQGFERIIYISCNPDTLYENLKTLTQTHRVTKFALFDQFPYTHHVESG 355 Query: 360 VLLVR 364 VLL + Sbjct: 356 VLLEK 360 >gi|169633681|ref|YP_001707417.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter baumannii SDF] gi|213157087|ref|YP_002319132.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter baumannii AB0057] gi|215483633|ref|YP_002325854.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter baumannii AB307-0294] gi|301348206|ref|ZP_07228947.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter baumannii AB056] gi|301510993|ref|ZP_07236230.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter baumannii AB058] gi|301597930|ref|ZP_07242938.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter baumannii AB059] gi|332850564|ref|ZP_08432840.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter baumannii 6013150] gi|332865774|ref|ZP_08436569.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter baumannii 6013113] gi|262827573|sp|B7H3Q6|TRMA_ACIB3 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|262827592|sp|B7I4Y4|TRMA_ACIB5 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|262827605|sp|B0VR22|TRMA_ACIBS RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|169152473|emb|CAP01441.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter baumannii] gi|213056247|gb|ACJ41149.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter baumannii AB0057] gi|213988998|gb|ACJ59297.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter baumannii AB307-0294] gi|332730626|gb|EGJ61940.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter baumannii 6013150] gi|332735115|gb|EGJ66199.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter baumannii 6013113] Length = 361 Score = 350 bits (897), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 170/365 (46%), Positives = 240/365 (65%), Gaps = 11/365 (3%) Query: 6 LIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF-- 63 + Y QQL K+DR+ F P L++F S H+RMRAEF IWH +D+++ MF Sbjct: 1 MTSSYRQQLQAKIDRITTQFSEFTPPTLEVFESPEQHFRMRAEFRIWHTENDMFYAMFER 60 Query: 64 --DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTL 121 D + K +RID F IN LM ++A ++ LL +LF++D+L + S + +VTL Sbjct: 61 NDDGKQKTVVRIDEFPIADKSINDLMPLLLAELKANSLLSQRLFEVDFLATLSGEMLVTL 120 Query: 122 IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYR 181 IYHR L+ W + A L A K I+++GR+ KI + D+V E + R+ Y+ Sbjct: 121 IYHRKLNQEWEQAAKAL-----AEKLNIKIMGRSRGQKIVIGDDFVVEEFELLNRSFKYK 175 Query: 182 QIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241 QIE+SFTQPNA + ML+W A +G + LLELYCGNGNF+L L+ F+RVLA E+AK Sbjct: 176 QIESSFTQPNAQVCKKMLQWACDAAEGSKKHLLELYCGNGNFTLPLSLKFERVLATELAK 235 Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK--DIDIHSYRFKTIFVDP 299 SV AA++NI N ++N+++ R+S++EFTQA + EREF RL+ DIDI SY F T+FVDP Sbjct: 236 SSVYAAQWNIEQNQIDNIQVARLSAEEFTQAYQGEREFRRLQEADIDIQSYDFGTVFVDP 295 Query: 300 PRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359 PR+G+DD T+ ++Q + I+YISCNPD+L +L L+ TH + + ALFDQFPYT H+E G Sbjct: 296 PRAGIDDETLKLLQGFERIIYISCNPDTLYENLKTLTQTHRVTKFALFDQFPYTHHVESG 355 Query: 360 VLLVR 364 VLL + Sbjct: 356 VLLEK 360 >gi|261363848|ref|ZP_05976731.1| tRNA (uracil-5-)-methyltransferase [Neisseria mucosa ATCC 25996] gi|288568441|gb|EFC90001.1| tRNA (uracil-5-)-methyltransferase [Neisseria mucosa ATCC 25996] Length = 360 Score = 350 bits (897), Expect = 3e-94, Method: Compositional matrix adjust. Identities = 167/362 (46%), Positives = 242/362 (66%), Gaps = 11/362 (3%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69 Y QQL +K+ L+Q+ P +Q+F S HYRMRAEF IWH+G ++++ MF++ K Sbjct: 4 YTQQLDQKIQYLQQLFQGLDFPEIQVFESPEQHYRMRAEFRIWHEGGEMFYAMFERGQKA 63 Query: 70 R----MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHR 125 +R D F S IN LM +++ P L+ + + +++L++ S + +VT+IYH+ Sbjct: 64 SGASLIRCDQFPAASESINTLMPKLIEAATQNPELKKRWYAVEFLSALSSEMLVTMIYHK 123 Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIEN 185 LD+AW+ A L AR+ I +IGR+ KI L +DY+ E L V G+T YRQ+E Sbjct: 124 KLDEAWQRAAETL-----ARELGIHIIGRSRGQKIVLTQDYITEELNVNGKTFRYRQVEG 178 Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 SFTQPNA + ML W + + GDLLELYCGNGNF+L L++HF +VLA E++K SV Sbjct: 179 SFTQPNARVCEKMLGWACDVAQNLSGDLLELYCGNGNFTLPLSQHFHQVLATEVSKTSVY 238 Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSG 303 AA++NI AN +N+KI R+S++EFT+A + R+F+RL++ + + Y F TIFVDPPR+G Sbjct: 239 AAQWNIEANQRDNIKIARLSAEEFTEAYTQSRKFHRLQEQGVSLKDYGFSTIFVDPPRAG 298 Query: 304 LDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363 +DD T+ +V + +I+YISCNP++L +L L THTIER ALFDQFP+T H+E GV L Sbjct: 299 VDDETLKLVSQFDNIIYISCNPETLRANLDTLCQTHTIERAALFDQFPFTHHIESGVYLK 358 Query: 364 RK 365 +K Sbjct: 359 KK 360 >gi|85711838|ref|ZP_01042893.1| tRNA (uracil-5-)-methyltransferase [Idiomarina baltica OS145] gi|85694235|gb|EAQ32178.1| tRNA (uracil-5-)-methyltransferase [Idiomarina baltica OS145] Length = 368 Score = 350 bits (897), Expect = 3e-94, Method: Compositional matrix adjust. Identities = 169/362 (46%), Positives = 244/362 (67%) Query: 4 TLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63 T+ +Y Q AEK L+Q++ + L++ S HYRMRAEF +WH+ +DLY+IMF Sbjct: 5 TIDPSEYPLQFAEKAKHLQQLLSPYYKGELELHESPRTHYRMRAEFRVWHEQNDLYYIMF 64 Query: 64 DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIY 123 + +T+E++R+D F+PGS LIN LM + + +P+LR KLFQ+D+LT+ +++A+++ +Y Sbjct: 65 NPETREKIRMDEFVPGSGLINTLMKAVRDYVIDKPILRNKLFQVDFLTTTTNEAVISCLY 124 Query: 124 HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQI 183 H+ LD W E A ++ + L ++ LIGRA K K + D V E L + R Q Sbjct: 125 HKQLDAEWEESAKQMHETLSPITDKLGLIGRARKQKHVIGTDEVVECLNIGNRHWKTVQT 184 Query: 184 ENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 EN+FTQPNA IN M+ W + + + DLLELYCGNGNF+L L+ F+ VLA EI+K S Sbjct: 185 ENAFTQPNAEINKQMITWAINSVGTPKHDLLELYCGNGNFTLPLSTQFEHVLATEISKRS 244 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 V +A+ N +NNV+ VRMSS+EF++A++ + E RL++ID+ SY F T+ VDPPR+G Sbjct: 245 VASAQVATEMNGINNVEFVRMSSEEFSEALKGDVEKRRLQNIDLTSYDFGTVLVDPPRAG 304 Query: 304 LDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363 LD T+ +V Y ILYISCNPD+L ++++ LS T+ + ALFDQFPYT H+E GVLL Sbjct: 305 LDALTLNVVSQYQRILYISCNPDTLIQNINDLSDKFTVTKAALFDQFPYTHHIEAGVLLE 364 Query: 364 RK 365 RK Sbjct: 365 RK 366 >gi|296313486|ref|ZP_06863427.1| tRNA (uracil-5-)-methyltransferase [Neisseria polysaccharea ATCC 43768] gi|296840005|gb|EFH23943.1| tRNA (uracil-5-)-methyltransferase [Neisseria polysaccharea ATCC 43768] Length = 367 Score = 349 bits (896), Expect = 3e-94, Method: Compositional matrix adjust. Identities = 171/368 (46%), Positives = 239/368 (64%), Gaps = 11/368 (2%) Query: 7 IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66 + Y QQL +K DRL+ + P +++ S HYRMRAEF IWH+G ++++ MF++ Sbjct: 1 MSDYTQQLQDKKDRLKTLFAGLDFPEWEVYESPDKHYRMRAEFRIWHEGSEMFYAMFEKG 60 Query: 67 TKER----MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122 K +R D F S +N LM E++A LR + + +++L++ S + +VT+I Sbjct: 61 QKASGASLIRCDRFEAASEAVNRLMPELIAVAAQSAELRNRWYAVEFLSTLSGEMLVTMI 120 Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182 YH+ LD+ W + A ++ I +IGR+ KI L +DY E L V R YRQ Sbjct: 121 YHKRLDNEWMQAA-----QALQQQLDISVIGRSRGQKIVLKQDYATETLKVGNRDFRYRQ 175 Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 IE SFTQPNA + MLEW A +G+ GDLLELYCGNGNF+L L+ F+RVLA EI+K Sbjct: 176 IEGSFTQPNAAVCQKMLEWACGAAEGLDGDLLELYCGNGNFTLPLSEKFERVLATEISKT 235 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPP 300 SV AA++NI AN + N+KI R+S++EFT+A +REF RLKD I + Y F TIFVDPP Sbjct: 236 SVSAAQWNIEANRIGNIKITRLSAEEFTEAYTGKREFKRLKDGGIALTDYAFSTIFVDPP 295 Query: 301 RSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360 R+G+D+ T+ +V + +I+YISCNP++L +L L THT+ER ALFDQFP+T H+E GV Sbjct: 296 RAGIDEETLKLVSQFDNIIYISCNPETLRANLDTLVETHTVERAALFDQFPFTHHIESGV 355 Query: 361 LLVRKPSG 368 LL +K G Sbjct: 356 LLKKKILG 363 >gi|308389801|gb|ADO32121.1| tRNA (uracil-5-)-methyltransferase [Neisseria meningitidis alpha710] Length = 362 Score = 349 bits (895), Expect = 4e-94, Method: Compositional matrix adjust. Identities = 169/365 (46%), Positives = 237/365 (64%), Gaps = 11/365 (3%) Query: 7 IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66 + Y QQL +K D L+ + VP +++ S HYRMRAEF IWH+G ++++ MF++ Sbjct: 1 MSDYTQQLQDKKDHLKTLFAGLDVPEWEVYESPDKHYRMRAEFRIWHEGGEMFYAMFEKG 60 Query: 67 TKER----MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122 K +R D F S +N LM E++A LR + + +++L++ S + +VT+I Sbjct: 61 QKAGGASLIRCDRFEAASEAVNRLMPELIAVAAQSAELRNRWYAVEFLSTLSGEMLVTMI 120 Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182 YH+ LD+ W ++ I +IGR+ KI L +DYV E L V R YRQ Sbjct: 121 YHKRLDNEWM-----QAAQALQQQLDISVIGRSRGQKIVLKQDYVTETLKVGNRDFRYRQ 175 Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 IE SFTQPNA + MLEW A +G+ GDLLELYCGNGNF+L L+ F+RVLA EI+K Sbjct: 176 IEGSFTQPNAAVCQKMLEWACGAAEGLDGDLLELYCGNGNFTLPLSEKFERVLATEISKT 235 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPP 300 S+ AA++NI AN + N+KI R+S++EFT+A R+REF RLKD I + Y F TIFVDPP Sbjct: 236 SISAAQWNIEANRIGNIKIARLSAEEFTEAYTRKREFKRLKDGGIALTDYAFSTIFVDPP 295 Query: 301 RSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360 R+G+D+ T+ +V + +I+YISCNP++L +L L TH +ER ALFDQFP+T H+E GV Sbjct: 296 RAGIDEETLKLVSQFDNIIYISCNPETLRANLDTLVETHAVERAALFDQFPFTHHIESGV 355 Query: 361 LLVRK 365 LL +K Sbjct: 356 LLKKK 360 >gi|260555229|ref|ZP_05827450.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter baumannii ATCC 19606] gi|260411771|gb|EEX05068.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter baumannii ATCC 19606] Length = 361 Score = 349 bits (895), Expect = 4e-94, Method: Compositional matrix adjust. Identities = 170/365 (46%), Positives = 241/365 (66%), Gaps = 11/365 (3%) Query: 6 LIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF-- 63 + Y QQL K+DR+ F P L++F S H+RMRAEF IWH +D+++ MF Sbjct: 1 MTSSYRQQLQAKIDRITTQFSEFTPPTLEVFESPEQHFRMRAEFRIWHTENDMFYAMFER 60 Query: 64 --DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTL 121 D + K +RID F IN LM ++A ++ LL +LF++D+L + S + +VTL Sbjct: 61 NDDGKQKTVVRIDEFPIADKSINDLMPLLLAELKANSLLSQRLFEVDFLATLSGEMLVTL 120 Query: 122 IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYR 181 IYHR L+ W + A L A K I+++GR+ KI + D+V E + R+ Y+ Sbjct: 121 IYHRKLNQEWEQEAKAL-----AEKLNIKIMGRSRGQKIVIGDDFVVEEFELLNRSFKYK 175 Query: 182 QIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241 QIE+SFTQPNA + ML+W A +G + LLELYCGNGNF+L L+ F+RVLA E+AK Sbjct: 176 QIESSFTQPNAQVCKKMLQWACDAAEGSKKHLLELYCGNGNFTLPLSLKFERVLATELAK 235 Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK--DIDIHSYRFKTIFVDP 299 SV AA++NI N ++N+++ R+S++EFTQA + EREF RL+ DIDI SY F T+FVDP Sbjct: 236 SSVYAAQWNIEQNQIDNIQVARLSAEEFTQAYQGEREFRRLQEADIDIQSYDFDTVFVDP 295 Query: 300 PRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359 PR+G+DD T+ ++Q++ I+YISCNPD+L +L L+ TH + + ALFDQFPYT H+E G Sbjct: 296 PRAGIDDETLKLLQSFERIIYISCNPDTLYENLKTLTQTHRVTKFALFDQFPYTHHVESG 355 Query: 360 VLLVR 364 VLL + Sbjct: 356 VLLEK 360 >gi|319943226|ref|ZP_08017509.1| tRNA (uracil-5-)-methyltransferase [Lautropia mirabilis ATCC 51599] gi|319743768|gb|EFV96172.1| tRNA (uracil-5-)-methyltransferase [Lautropia mirabilis ATCC 51599] Length = 425 Score = 349 bits (895), Expect = 5e-94, Method: Compositional matrix adjust. Identities = 173/377 (45%), Positives = 245/377 (64%), Gaps = 21/377 (5%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHI 61 S T + Y++QL K + L+ + +P +++F S P HYRMRAEF IWH+ D + + Sbjct: 41 SETSVAADYDRQLDAKHEALKALFAGLDIPAIEVFASAPQHYRMRAEFRIWHEDDAICYA 100 Query: 62 MFDQQTKER----MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQA 117 MF K R++ F P INALM ++A +P+LR + +Q+++L + S + Sbjct: 101 MFSPGQKASSATLQRVEQFAPACEAINALMPRLLAATSADPVLRRRWYQVEFLATLSGEM 160 Query: 118 IVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRT 177 +VT++YHR LDDAW A +L+ L I +IGR+ K L +D+V ERL + G Sbjct: 161 LVTMVYHRPLDDAWEAAARQLQATLG-----IHVIGRSRGQKRVLSQDFVTERLEIPGPA 215 Query: 178 ------LIYRQIENSFTQPNAGINVHMLEWVLAATK--GIQ--GDLLELYCGNGNFSLVL 227 +YRQ E +FTQPNA + M+ W A + GI DLLELYCGNGNF+L L Sbjct: 216 GTPAAPFLYRQPEGAFTQPNARMCERMIGWACEAVQQAGISPASDLLELYCGNGNFTLPL 275 Query: 228 ARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--I 285 +RHF +VLA E++K SV+AA++NI AN NV+I R+S++E+TQAM+ ER F RL++ I Sbjct: 276 SRHFRQVLATEVSKTSVQAAQWNIQANARPNVRIARLSAEEYTQAMQGERSFRRLREQEI 335 Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLA 345 + + F T+ VDPPR+G+DDAT+ ++Q +P+I+YISCNP +LC +L L THTIER+A Sbjct: 336 SLAEHDFSTVLVDPPRAGVDDATLALLQRFPNIVYISCNPHTLCANLDTLCQTHTIERMA 395 Query: 346 LFDQFPYTRHMECGVLL 362 LFDQFP+T H ECGVLL Sbjct: 396 LFDQFPFTPHTECGVLL 412 >gi|254671646|emb|CBA09369.1| tRNA (uracil-5-)-methyltransferase [Neisseria meningitidis alpha153] Length = 362 Score = 349 bits (895), Expect = 5e-94, Method: Compositional matrix adjust. Identities = 169/365 (46%), Positives = 237/365 (64%), Gaps = 11/365 (3%) Query: 7 IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66 + Y QQL +K D L+ + VP +++ S HYRMRAEF IWH+G ++++ MF++ Sbjct: 1 MSDYTQQLQDKKDHLKTLFAGLDVPEWEVYESPDKHYRMRAEFRIWHEGGEMFYAMFEKG 60 Query: 67 TKER----MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122 K +R D F S +N LM E++A LR + + +++L++ S + +VT+I Sbjct: 61 QKAGGASLIRCDRFEAASEAVNRLMPELIAVAAQSAELRNRWYAVEFLSTLSGEMLVTMI 120 Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182 YH+ LD+ W ++ I +IGR+ KI L +DYV E L V R YRQ Sbjct: 121 YHKRLDNEWM-----QAAQALQQQLDISVIGRSRGQKIVLKQDYVTETLKVGNRDFRYRQ 175 Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 IE SFTQPNA + MLEW A +G+ GDLLELYCGNGNF+L L+ F+RVLA EI+K Sbjct: 176 IEGSFTQPNAAVCQKMLEWACGAAEGLDGDLLELYCGNGNFTLPLSEKFERVLATEISKT 235 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPP 300 SV AA++NI AN + N+KI R+S++EFT+A +REF RLKD I + Y F TIFVDPP Sbjct: 236 SVSAAQWNIEANRIGNIKIARLSAEEFTEAYTGKREFKRLKDGGIALTDYAFSTIFVDPP 295 Query: 301 RSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360 R+G+D+ T+ +V + +I+YISCNP++L +L L+ TH +ER ALFDQFP+T H+E GV Sbjct: 296 RAGIDEETLKLVSQFDNIIYISCNPETLRTNLDTLAETHAVERAALFDQFPFTHHIESGV 355 Query: 361 LLVRK 365 LL +K Sbjct: 356 LLKKK 360 >gi|254673083|emb|CBA07765.1| tRNA (uracil-5-)-methyltransferase [Neisseria meningitidis alpha275] gi|261392096|emb|CAX49593.1| tRNA (uracil-5-)-methyltransferase (tRNA(M-5-U54)-methyltransferase; RUMT) [Neisseria meningitidis 8013] gi|325204641|gb|ADZ00095.1| tRNA (uracil-5-)-methyltransferase [Neisseria meningitidis M01-240355] Length = 362 Score = 349 bits (895), Expect = 5e-94, Method: Compositional matrix adjust. Identities = 169/365 (46%), Positives = 237/365 (64%), Gaps = 11/365 (3%) Query: 7 IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66 + Y QQL +K D L+ + VP +++ S HYRMRAEF IWH+G ++++ MF++ Sbjct: 1 MSDYTQQLQDKKDHLKTLFAGLDVPEWEVYESPDKHYRMRAEFRIWHEGGEMFYAMFEKG 60 Query: 67 TKER----MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122 K +R D F S +N LM E++A LR + + +++L++ S + +VT+I Sbjct: 61 QKAGGASLIRCDRFEAASEAVNRLMPELIAVAAQSAELRNRWYAVEFLSTLSGEMLVTMI 120 Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182 YH+ LD+ W ++ I +IGR+ KI L +DYV E L V R YRQ Sbjct: 121 YHKRLDNEWM-----QAAQALQQQLDISVIGRSRGQKIVLKQDYVTETLKVGNRDFRYRQ 175 Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 IE SFTQPNA + MLEW A +G+ GDLLELYCGNGNF+L L+ F+RVLA EI+K Sbjct: 176 IEGSFTQPNAAVCQKMLEWACGAAEGLDGDLLELYCGNGNFTLPLSEKFERVLATEISKT 235 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPP 300 SV AA++NI AN + N+KI R+S++EFT+A +REF RLKD I + Y F TIFVDPP Sbjct: 236 SVSAAQWNIEANRIGNIKIARLSAEEFTEAYTGKREFKRLKDGGIALTDYAFSTIFVDPP 295 Query: 301 RSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360 R+G+D+ T+ +V + +I+YISCNP++L +L L+ TH +ER ALFDQFP+T H+E GV Sbjct: 296 RAGIDEETLKLVSQFDNIIYISCNPETLRANLDTLAETHAVERAALFDQFPFTHHIESGV 355 Query: 361 LLVRK 365 LL +K Sbjct: 356 LLKKK 360 >gi|59801680|ref|YP_208392.1| tRNA (uracil-5-)-methyltransferase [Neisseria gonorrhoeae FA 1090] gi|194099095|ref|YP_002002180.1| tRNA (uracil-5-)-methyltransferase [Neisseria gonorrhoeae NCCP11945] gi|239999401|ref|ZP_04719325.1| tRNA (uracil-5-)-methyltransferase [Neisseria gonorrhoeae 35/02] gi|240014578|ref|ZP_04721491.1| tRNA (uracil-5-)-methyltransferase [Neisseria gonorrhoeae DGI18] gi|240017023|ref|ZP_04723563.1| tRNA (uracil-5-)-methyltransferase [Neisseria gonorrhoeae FA6140] gi|240081341|ref|ZP_04725884.1| tRNA (uracil-5-)-methyltransferase [Neisseria gonorrhoeae FA19] gi|240113550|ref|ZP_04728040.1| tRNA (uracil-5-)-methyltransferase [Neisseria gonorrhoeae MS11] gi|240116100|ref|ZP_04730162.1| tRNA (uracil-5-)-methyltransferase [Neisseria gonorrhoeae PID18] gi|240118384|ref|ZP_04732446.1| tRNA (uracil-5-)-methyltransferase [Neisseria gonorrhoeae PID1] gi|240121100|ref|ZP_04734062.1| tRNA (uracil-5-)-methyltransferase [Neisseria gonorrhoeae PID24-1] gi|240123929|ref|ZP_04736885.1| tRNA (uracil-5-)-methyltransferase [Neisseria gonorrhoeae PID332] gi|240126129|ref|ZP_04739015.1| tRNA (uracil-5-)-methyltransferase [Neisseria gonorrhoeae SK-92-679] gi|240128606|ref|ZP_04741267.1| tRNA (uracil-5-)-methyltransferase [Neisseria gonorrhoeae SK-93-1035] gi|254494120|ref|ZP_05107291.1| tRNA (uracil-5-)-methyltransferase [Neisseria gonorrhoeae 1291] gi|260440090|ref|ZP_05793906.1| tRNA (uracil-5-)-methyltransferase [Neisseria gonorrhoeae DGI2] gi|268595221|ref|ZP_06129388.1| tRNA (uracil-5-)-methyltransferase [Neisseria gonorrhoeae 35/02] gi|268597443|ref|ZP_06131610.1| tRNA (uracil-5-)-methyltransferase [Neisseria gonorrhoeae FA19] gi|268599615|ref|ZP_06133782.1| tRNA (uracil-5-)-methyltransferase [Neisseria gonorrhoeae MS11] gi|268601766|ref|ZP_06135933.1| tRNA (uracil-5-)-methyltransferase [Neisseria gonorrhoeae PID18] gi|268604096|ref|ZP_06138263.1| tRNA (uracil-5-)-methyltransferase [Neisseria gonorrhoeae PID1] gi|268682554|ref|ZP_06149416.1| tRNA (uracil-5-)-methyltransferase [Neisseria gonorrhoeae PID332] gi|268684715|ref|ZP_06151577.1| tRNA (uracil-5-)-methyltransferase [Neisseria gonorrhoeae SK-92-679] gi|268686994|ref|ZP_06153856.1| tRNA (uracil-5-)-methyltransferase [Neisseria gonorrhoeae SK-93-1035] gi|291043378|ref|ZP_06569101.1| tRNA (uracil-5-)-methyltransferase [Neisseria gonorrhoeae DGI2] gi|293398682|ref|ZP_06642860.1| tRNA (uracil-5-)-methyltransferase [Neisseria gonorrhoeae F62] gi|75432439|sp|Q5F757|TRMA_NEIG1 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|262827706|sp|B4RN45|TRMA_NEIG2 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|59718575|gb|AAW89980.1| putative tRNA (uracil-5-)-methyltransferase [Neisseria gonorrhoeae FA 1090] gi|193934385|gb|ACF30209.1| tRNA (uracil-5-)-methyltransferase [Neisseria gonorrhoeae NCCP11945] gi|226513160|gb|EEH62505.1| tRNA (uracil-5-)-methyltransferase [Neisseria gonorrhoeae 1291] gi|268548610|gb|EEZ44028.1| tRNA (uracil-5-)-methyltransferase [Neisseria gonorrhoeae 35/02] gi|268551231|gb|EEZ46250.1| tRNA (uracil-5-)-methyltransferase [Neisseria gonorrhoeae FA19] gi|268583746|gb|EEZ48422.1| tRNA (uracil-5-)-methyltransferase [Neisseria gonorrhoeae MS11] gi|268585897|gb|EEZ50573.1| tRNA (uracil-5-)-methyltransferase [Neisseria gonorrhoeae PID18] gi|268588227|gb|EEZ52903.1| tRNA (uracil-5-)-methyltransferase [Neisseria gonorrhoeae PID1] gi|268622838|gb|EEZ55238.1| tRNA (uracil-5-)-methyltransferase [Neisseria gonorrhoeae PID332] gi|268624999|gb|EEZ57399.1| tRNA (uracil-5-)-methyltransferase [Neisseria gonorrhoeae SK-92-679] gi|268627278|gb|EEZ59678.1| tRNA (uracil-5-)-methyltransferase [Neisseria gonorrhoeae SK-93-1035] gi|291012984|gb|EFE04967.1| tRNA (uracil-5-)-methyltransferase [Neisseria gonorrhoeae DGI2] gi|291611153|gb|EFF40250.1| tRNA (uracil-5-)-methyltransferase [Neisseria gonorrhoeae F62] gi|317164649|gb|ADV08190.1| tRNA (uracil-5-)-methyltransferase [Neisseria gonorrhoeae TCDC-NG08107] Length = 362 Score = 348 bits (894), Expect = 6e-94, Method: Compositional matrix adjust. Identities = 172/365 (47%), Positives = 240/365 (65%), Gaps = 11/365 (3%) Query: 7 IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66 ++ Y QQL K D L+ + VP +++ S HYRMRAEF IWH+G ++++ MF++ Sbjct: 1 MNDYTQQLQGKKDYLKTLFAGLDVPEWEVYESPDKHYRMRAEFRIWHEGGEMFYAMFEKG 60 Query: 67 TKER----MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122 K +R D F S +N LM E++A LR + +++L++ S + +VT+I Sbjct: 61 QKASGASLIRCDRFDAASEAVNCLMPELIAVAAQSAELRNHWYAVEFLSTLSGEMLVTMI 120 Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182 YH+ LDD W + A L+ L I +IGR+ KI L +DYV E L V R YRQ Sbjct: 121 YHKRLDDEWMKAAQALQQQL-----DISVIGRSRGQKIVLKQDYVTETLRVGDRDFHYRQ 175 Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 IE SFTQPNA + MLEW A +G+ GDLLELYCGNGNF+L L+R+F +VLA EI+K Sbjct: 176 IEGSFTQPNAAVCRKMLEWACRAAEGLGGDLLELYCGNGNFTLPLSRYFRQVLATEISKT 235 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPP 300 SV AA++NI AN + N+KI R+S++EFT+A +REF RLK+ I + Y F TIFVDPP Sbjct: 236 SVSAAQWNIEANWIGNIKIARLSAEEFTEAYTGKREFTRLKESGIVLTDYAFSTIFVDPP 295 Query: 301 RSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360 R+G+D+ T+ +V + +I+YISCNP++L +L L+ THT+ R ALFDQFP+T H+E GV Sbjct: 296 RAGIDEETLKLVSQFDNIIYISCNPETLRANLDTLTETHTVGRAALFDQFPFTHHIESGV 355 Query: 361 LLVRK 365 LL +K Sbjct: 356 LLKKK 360 >gi|239502231|ref|ZP_04661541.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter baumannii AB900] Length = 361 Score = 348 bits (894), Expect = 6e-94, Method: Compositional matrix adjust. Identities = 170/365 (46%), Positives = 240/365 (65%), Gaps = 11/365 (3%) Query: 6 LIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF-- 63 + Y QQL K+DR+ F P L++F S H+RMRAEF IWH +D+++ MF Sbjct: 1 MTSSYRQQLQAKIDRITTQFSEFTPPTLEVFESPEQHFRMRAEFRIWHTENDMFYAMFER 60 Query: 64 --DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTL 121 D + K +RID F IN LM ++A ++ LL +LF+ID+L + S + +VTL Sbjct: 61 NDDGKQKTVVRIDEFPIADKSINDLMPLLLAELKANSLLSQRLFEIDFLATLSGEMLVTL 120 Query: 122 IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYR 181 IYHR L+ W + A L A K I+++GR+ KI + D+V E + R+ Y+ Sbjct: 121 IYHRKLNQEWEQAAKAL-----AEKLNIKIMGRSRGQKIVIGDDFVVEEFELLNRSFKYK 175 Query: 182 QIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241 QIE+SFTQPNA + ML+W A +G + LLELYCGNGNF+L L+ F+RVLA E+AK Sbjct: 176 QIESSFTQPNAQVCKKMLQWACDAAEGSKKHLLELYCGNGNFTLPLSLKFERVLATELAK 235 Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK--DIDIHSYRFKTIFVDP 299 SV AA++NI N ++N+++ R+S++EFTQA + EREF RL+ DIDI SY F T+FVDP Sbjct: 236 SSVYAAQWNIEQNQIDNIQVARLSAEEFTQAYQGEREFRRLQEADIDIQSYDFDTVFVDP 295 Query: 300 PRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359 PR+G+D+ T+ ++Q + I+YISCNPD+L +L L+ TH + + ALFDQFPYT H+E G Sbjct: 296 PRAGIDNETLKLLQGFERIIYISCNPDTLYENLKTLTQTHRVTKFALFDQFPYTHHVESG 355 Query: 360 VLLVR 364 VLL + Sbjct: 356 VLLEK 360 >gi|262831423|sp|A3M4W0|TRMA_ACIBT RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|193077167|gb|ABO11954.2| tRNA (uracil-5-)-methyltransferase [Acinetobacter baumannii ATCC 17978] Length = 361 Score = 348 bits (893), Expect = 8e-94, Method: Compositional matrix adjust. Identities = 169/365 (46%), Positives = 240/365 (65%), Gaps = 11/365 (3%) Query: 6 LIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF-- 63 + Y QQL K+DR+ F P L++F S H+RMRAEF IWH +D+++ MF Sbjct: 1 MTSSYRQQLQAKIDRITTQFSEFTPPTLEVFESPEQHFRMRAEFRIWHTENDMFYAMFER 60 Query: 64 --DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTL 121 D + K +RID F IN LM ++A ++ LL +LF++D+L + S + +VTL Sbjct: 61 NDDGKQKTVVRIDEFPIADKSINDLMPLLLAELKANSLLSQRLFEVDFLATLSGEMLVTL 120 Query: 122 IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYR 181 IYHR L+ W + A L A K I+++GR+ KI + D+V E + R+ Y+ Sbjct: 121 IYHRKLNQEWEQAAKAL-----AEKLNIKIMGRSRGQKIVIGDDFVVEEFELLNRSFKYK 175 Query: 182 QIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241 QIE+SFTQPNA + ML+W A +G + LLELYCGNGNF+L L+ F+RVLA E+AK Sbjct: 176 QIESSFTQPNAQVCKKMLQWACDAAEGSKKHLLELYCGNGNFTLPLSLKFERVLATELAK 235 Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDP 299 SV AA++NI N ++N+++ R+S++EFTQA + EREF RL++ IDI SY F T+FVDP Sbjct: 236 SSVYAAQWNIEQNQIDNIQVARLSAEEFTQAYQGEREFRRLQEAYIDIQSYDFGTVFVDP 295 Query: 300 PRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359 PR+G+DD T+ ++Q + I+YISCNPD+L +L L+ TH + + ALFDQFPYT H+E G Sbjct: 296 PRAGIDDETLKLLQGFERIIYISCNPDTLYENLKTLTQTHRVTKFALFDQFPYTHHVESG 355 Query: 360 VLLVR 364 VLL + Sbjct: 356 VLLEK 360 >gi|254448334|ref|ZP_05061795.1| tRNA (uracil-5-)-methyltransferase [gamma proteobacterium HTCC5015] gi|198261947|gb|EDY86231.1| tRNA (uracil-5-)-methyltransferase [gamma proteobacterium HTCC5015] Length = 364 Score = 348 bits (892), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 177/367 (48%), Positives = 240/367 (65%), Gaps = 13/367 (3%) Query: 7 IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD-- 64 ++ Y QQL K RL Q++ FQ P L+++ S P++ R+RAEF IWH+G+D + MF+ Sbjct: 1 MNDYAQQLERKRQRLSQLLAPFQAPALEVYESAPLNCRLRAEFRIWHEGEDCCYAMFEPG 60 Query: 65 --QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122 +K +RI+ S IN LM ++ ++ + L R +L+QI++L++ S +VTLI Sbjct: 61 QKASSKSLIRIEQLPIASRAINELMPPLLDALKSKELTRKRLYQIEFLSTLSGDMLVTLI 120 Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182 YH+ LDD WR A +L++ L I +IGR+ K K L RDYV E+ TVA R Y+Q Sbjct: 121 YHKKLDDDWRTAAAQLQEQLG-----IAIIGRSRKQKCVLSRDYVLEQFTVAQRHYEYQQ 175 Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQ--GDLLELYCGNGNFSLVLARHFDRVLAVEIA 240 +E FTQPN + ML W K +Q GDLLELYCGNGNF+L L+RHF RVLA E+A Sbjct: 176 LEGGFTQPNGAMCEIMLNWASDCAKTMQARGDLLELYCGNGNFTLPLSRHFRRVLATEVA 235 Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL--KDIDIHSYRFKTIFVD 298 K SV AA +NI N +N+ ++R+SS+E TQA+ EREF RL K I++ Y F +FVD Sbjct: 236 KTSVYAAEWNIQRNACDNITVIRLSSEELTQALNGEREFRRLQQKAIELDQYDFDAVFVD 295 Query: 299 PPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMEC 358 PPRSG+D T + + HILYISCNP++L RDL++L TH IER ALFDQFP T H+E Sbjct: 296 PPRSGMDVNTCQLTARFEHILYISCNPETLARDLALLCETHRIERAALFDQFPQTDHIEA 355 Query: 359 GVLLVRK 365 GV L R+ Sbjct: 356 GVWLKRQ 362 >gi|309378436|emb|CBX22931.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 367 Score = 347 bits (891), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 173/368 (47%), Positives = 238/368 (64%), Gaps = 11/368 (2%) Query: 7 IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66 + Y QQL K D L+ + VP +++ S HYRMRAEF IWH+G ++++ MF++ Sbjct: 1 MSDYTQQLQGKKDYLKTLFAGLDVPEWEVYESPDKHYRMRAEFRIWHEGGEMFYAMFEKG 60 Query: 67 TKER----MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122 K +R D F S +N LM E++A LR + + +++L++ + +VT+I Sbjct: 61 QKAGGASLIRCDRFDAASEAVNRLMPELIALAAQSAELRNRWYAVEFLSTLGGEMLVTMI 120 Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182 YH+ LDD W IR AL ++ I +IGR+ KI L +DYV E L V R YRQ Sbjct: 121 YHKRLDDEW----IRAAQALQ-QQLDISVIGRSRGQKIVLKQDYVTETLRVGDRDFHYRQ 175 Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 IE FTQPNA + MLEW A +G+ GDLLELYCGNGNF+L L+ F+RVLA EI+K Sbjct: 176 IEGGFTQPNAAVCQKMLEWACGAAEGLGGDLLELYCGNGNFTLPLSEKFERVLATEISKT 235 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPP 300 SV AA++NI AN + N+KI R+S++EFT+A +REF RLK+ I + Y F TIFVDPP Sbjct: 236 SVGAAQWNIEANRIGNIKIARLSAEEFTEAYTGKREFKRLKEGGIALTDYAFSTIFVDPP 295 Query: 301 RSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360 R+G+D T+ +V + +I+YISCNP++L +L L THT+ER ALFDQFP+T H+E GV Sbjct: 296 RAGIDGETLKLVSQFDNIIYISCNPETLRANLDTLVETHTVERAALFDQFPFTPHIESGV 355 Query: 361 LLVRKPSG 368 LL +K G Sbjct: 356 LLKKKILG 363 >gi|294788983|ref|ZP_06754223.1| tRNA (uracil-5-)-methyltransferase [Simonsiella muelleri ATCC 29453] gi|294483085|gb|EFG30772.1| tRNA (uracil-5-)-methyltransferase [Simonsiella muelleri ATCC 29453] Length = 363 Score = 347 bits (891), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 173/365 (47%), Positives = 242/365 (66%), Gaps = 14/365 (3%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69 Y +QL +K + L + + F P LQ+F S HYR RAEF IWH+GD + + MF K Sbjct: 4 YNEQLQQKTNYLTEKLRPFHAPKLQVFPSAEQHYRQRAEFRIWHEGDAMSYAMFQAGQKA 63 Query: 70 R----MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQS--DQAIVTLIY 123 +++D F + IN LM ++M I P+LR + +Q+++L + S + +VTLIY Sbjct: 64 SSASLIKLDNFPTAAHSINDLMPKLMHAISDCPVLRERWYQVEFLATLSVDSKILVTLIY 123 Query: 124 HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQI 183 H+ LDDAW A +L++ L+ I +IGR+ KI L +D+V E+LTV GR YRQ+ Sbjct: 124 HKRLDDAWEAAARQLQNDLN-----IWIIGRSRGQKIVLTQDFVTEKLTVHGREFQYRQL 178 Query: 184 ENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 E FTQPNA I ML W AA Q DLLELYCGNGNF+L L++HF RVLA EI+K Sbjct: 179 EGGFTQPNAQICEKMLAWACNAAGNSKQFDLLELYCGNGNFTLPLSQHFRRVLATEISKT 238 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL--KDIDIHSYRFKTIFVDPP 300 SV AA++NI+AN +NN++I R+S++E T+A R F RL + ID+ Y F TIF+DPP Sbjct: 239 SVAAAQWNISANQINNIQIARLSAEELTEAFSGSRAFQRLTTQGIDLQHYDFSTIFIDPP 298 Query: 301 RSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360 R+G+DD T+ +V + HI+Y+SCNP++LC +L L+ H I+ +ALFDQFP+T H+E GV Sbjct: 299 RAGVDDETLKLVAKFEHIIYVSCNPETLCENLQYLTQMHKIQEVALFDQFPFTHHIETGV 358 Query: 361 LLVRK 365 LL++K Sbjct: 359 LLIKK 363 >gi|184157892|ref|YP_001846231.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter baumannii ACICU] gi|332872728|ref|ZP_08440694.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter baumannii 6014059] gi|262827600|sp|B2HYZ7|TRMA_ACIBC RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|183209486|gb|ACC56884.1| SAM-dependent methyltransferase related to tRNA (uracil-5-)-methyltransferase [Acinetobacter baumannii ACICU] gi|322508211|gb|ADX03665.1| trmA [Acinetobacter baumannii 1656-2] gi|323517837|gb|ADX92218.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter baumannii TCDC-AB0715] gi|332739025|gb|EGJ69886.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter baumannii 6014059] Length = 361 Score = 347 bits (891), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 169/365 (46%), Positives = 241/365 (66%), Gaps = 11/365 (3%) Query: 6 LIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF-- 63 + Y QQL K+DR+ F P L++F S H+RMRAEF IWH +D+++ MF Sbjct: 1 MTSSYHQQLQAKIDRITTQFSEFTPPTLEVFESPEQHFRMRAEFRIWHTENDMFYAMFER 60 Query: 64 --DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTL 121 D + K +RID F IN LM ++A ++ LL +LF++D+L + S + +VTL Sbjct: 61 NDDGKQKTVVRIDEFPIADKSINDLMPLLLAELKANSLLSQRLFEVDFLATLSGEMLVTL 120 Query: 122 IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYR 181 IYHR L+ W + A L A K I+++GR+ KI + D+V E + R+ Y+ Sbjct: 121 IYHRKLNQEWEQEAKAL-----AEKLNIKIMGRSRGQKIVIGDDFVVEEFELLNRSFKYK 175 Query: 182 QIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241 QIE+SFTQPNA + ML+W A +G + LLELYCGNGNF+L L+ F+RVLA E+AK Sbjct: 176 QIESSFTQPNAQVCKKMLQWACDAAEGSKKHLLELYCGNGNFTLPLSLKFERVLATELAK 235 Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK--DIDIHSYRFKTIFVDP 299 SV AA++NI N ++N+++ R+S++EFTQA + EREF RL+ DIDI SY F T+FVDP Sbjct: 236 SSVYAAQWNIEQNQIDNIQVARLSAEEFTQAYQGEREFRRLQEADIDIQSYDFDTVFVDP 295 Query: 300 PRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359 PR+G+DD T+ ++Q++ I+YISCNP++L +L L+ TH + + ALFDQFPYT H+E G Sbjct: 296 PRAGIDDETLKLLQSFERIIYISCNPNTLYENLKTLTQTHRVTKFALFDQFPYTHHVESG 355 Query: 360 VLLVR 364 VLL + Sbjct: 356 VLLEK 360 >gi|294669701|ref|ZP_06734768.1| hypothetical protein NEIELOOT_01602 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291308614|gb|EFE49857.1| hypothetical protein NEIELOOT_01602 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 364 Score = 347 bits (890), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 171/362 (47%), Positives = 241/362 (66%), Gaps = 11/362 (3%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ--- 66 Y QQL +K LR++ +P Q+F S HYRMRAEF IWH+GD + + MF++ Sbjct: 6 YLQQLDDKTALLRRLFSGIPMPEWQVFPSPEQHYRMRAEFRIWHEGDGISYAMFERGQKA 65 Query: 67 -TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHR 125 T +R+ F S IN LM ++A + +PLL+ +L+Q ++L++ S + +V+LIYHR Sbjct: 66 GTASLIRLTDFPAASASINRLMPLLLAELSADPLLKNRLYQCEFLSTLSGEMLVSLIYHR 125 Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIEN 185 LDD W+ A+ L+ +K I +IGR+ K+ L +D+V E LTV G T YRQ E Sbjct: 126 KLDDGWKHAALALQ-----KKLGIFIIGRSKGQKLVLAQDFVTETLTVNGETFRYRQTEG 180 Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 FTQPNA + MLEW + GDLLELYCGNGNF+L L+R F RVLA E++K SV+ Sbjct: 181 GFTQPNAAVCEKMLEWTCDCAQTPNGDLLELYCGNGNFTLPLSRRFRRVLATEVSKTSVQ 240 Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL--KDIDIHSYRFKTIFVDPPRSG 303 AA++NI+AN +N++I R+S++EFT+A REF RL + ID+ Y F T+FVDPPR+G Sbjct: 241 AAQWNISANGADNIRIARLSAEEFTEAFNGSREFRRLQKQQIDLAEYGFSTVFVDPPRAG 300 Query: 304 LDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363 +DD T+ ++ + I+YISCNP++L +L L THT+ER ALFDQFP+T H+E G+LL Sbjct: 301 VDDDTLKLLARFDRIIYISCNPETLRANLDALLQTHTVERAALFDQFPFTGHIESGLLLH 360 Query: 364 RK 365 +K Sbjct: 361 KK 362 >gi|325205604|gb|ADZ01057.1| tRNA (uracil-5-)-methyltransferase [Neisseria meningitidis M04-240196] Length = 362 Score = 347 bits (890), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 168/365 (46%), Positives = 235/365 (64%), Gaps = 11/365 (3%) Query: 7 IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66 + Y QQL +K D L+ + VP +++ S HYRMRAEF IWH+G ++++ MF++ Sbjct: 1 MSDYTQQLQDKKDHLKTLFAGLDVPEWEVYESPDKHYRMRAEFRIWHEGGEMFYAMFEKG 60 Query: 67 TKER----MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122 K +R D F S +N LM E++A LR + + +++L++ S + +VT+I Sbjct: 61 QKAGGASLIRCDRFDAASEAVNCLMPELIAVAAQSAELRNRWYAVEFLSTLSGEMLVTMI 120 Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182 YH+ LDD W ++ +IGR+ KI L +DYV E L V R YRQ Sbjct: 121 YHKRLDDEWM-----QAAQALQQQLDTSVIGRSRGQKIVLKQDYVTETLKVGNRDFRYRQ 175 Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 IE FTQPNA + MLEW A +G+ GDLLELYCGNGNF+L L+ F+RVLA EI+K Sbjct: 176 IEGGFTQPNAAVCQKMLEWACGAAEGLDGDLLELYCGNGNFTLPLSEKFERVLATEISKT 235 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPP 300 SV AA++NI AN + N+KI R+S++EFT+A +REF RLKD I + Y F TIFVDPP Sbjct: 236 SVSAAQWNIEANRIGNIKIARLSAEEFTEAYTGKREFKRLKDGGIALTDYAFSTIFVDPP 295 Query: 301 RSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360 R+G+D+ T+ +V + +I+YISCNP++L +L L+ TH +ER ALFDQFP+T H+E GV Sbjct: 296 RAGIDEETLKLVSQFDNIIYISCNPETLRANLDTLAETHAVERAALFDQFPFTHHIESGV 355 Query: 361 LLVRK 365 LL +K Sbjct: 356 LLKKK 360 >gi|325128707|gb|EGC51571.1| tRNA (uracil-5-)-methyltransferase [Neisseria meningitidis N1568] gi|325134787|gb|EGC57424.1| tRNA (uracil-5-)-methyltransferase [Neisseria meningitidis M13399] Length = 362 Score = 347 bits (889), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 168/365 (46%), Positives = 236/365 (64%), Gaps = 11/365 (3%) Query: 7 IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66 + Y QQL +K D L+ + VP +++ S HYRMRAEF IWH+G ++++ MF++ Sbjct: 1 MSDYTQQLQDKKDHLKTLFAGLDVPEWEVYESPDKHYRMRAEFRIWHEGGEMFYAMFEKG 60 Query: 67 TKER----MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122 K +R D F S +N LM E++A LR + + +++L++ S + +VT+I Sbjct: 61 QKAGGASLIRCDRFEAASEAVNRLMPELIAVAAQSAELRNRWYAVEFLSTLSGEMLVTMI 120 Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182 YH+ LD+ W ++ I +IGR+ KI L +DYV E L V R YRQ Sbjct: 121 YHKRLDNEWM-----QAAQALQQQLDISVIGRSRGQKIVLKQDYVTETLKVGNRDFRYRQ 175 Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 IE SFTQPNA + MLEW A +G+ GDLLELYCGNGNF+L L+ F+RVLA EI+K Sbjct: 176 IEGSFTQPNAAVCQKMLEWACGAAEGLDGDLLELYCGNGNFTLPLSEKFERVLATEISKT 235 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPP 300 S+ AA++NI AN + N+KI R+S++EFT+A +REF RLKD I + Y F TIFVDPP Sbjct: 236 SISAAQWNIEANRIGNIKIARLSAEEFTEAYTGKREFKRLKDGGIALTDYAFSTIFVDPP 295 Query: 301 RSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360 R+G+D+ T+ +V + +I+YISCNP++L +L L TH +ER ALFDQFP+T H+E GV Sbjct: 296 RAGIDEETLKLVSQFDNIIYISCNPETLRANLDTLVETHAVERAALFDQFPFTHHIESGV 355 Query: 361 LLVRK 365 LL +K Sbjct: 356 LLKKK 360 >gi|254480467|ref|ZP_05093714.1| tRNA (uracil-5-)-methyltransferase [marine gamma proteobacterium HTCC2148] gi|214039050|gb|EEB79710.1| tRNA (uracil-5-)-methyltransferase [marine gamma proteobacterium HTCC2148] Length = 371 Score = 346 bits (888), Expect = 3e-93, Method: Compositional matrix adjust. Identities = 169/364 (46%), Positives = 245/364 (67%), Gaps = 3/364 (0%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 ++ +QYE+ LA KV+R+ +++ + VP IFRS +RMRAEF +WH GD L ++MF Sbjct: 6 VIPEQYEELLAAKVERVSRLLDPYAVPEPSIFRSALTGFRMRAEFRMWHQGDALDYVMFR 65 Query: 65 QQ-TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIY 123 + K + I F I LM ++ I+ LR KLFQ+++L++ + ++++TL+Y Sbjct: 66 RDDPKTPVPIKTFPIACDSIQQLMPALLDIIKGNQELRRKLFQVEFLSTLAGESLITLVY 125 Query: 124 HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQI 183 HR L+ +W A +L D L ++ LIGR+ K KI L +++V E L + G++ Y+Q Sbjct: 126 HRKLEPSWEAEAQKLHDDLSTLCPELSLIGRSRKQKIILGQEWVCETLDIEGQSFRYQQY 185 Query: 184 ENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 E +FTQPNA +N+ M+ W + GDLLELYCGNGNF+L LA+ FD V+A E+AK S Sbjct: 186 EQAFTQPNARVNIKMISWACEQALNLSGDLLELYCGNGNFTLPLAQRFDNVIATELAKVS 245 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDID--IHSYRFKTIFVDPPR 301 V AAR N+ N V N +I+R++++E TQAM + REF RL+D+ +H Y +T+FVDPPR Sbjct: 246 VRAARNNLGMNAVRNTQIIRLAAEEVTQAMNQVREFRRLQDLSKPLHEYDLRTVFVDPPR 305 Query: 302 SGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVL 361 +GLD+ TV MV + I+YISCNP++L +L++L THT+E ALFDQFPYT HMECGVL Sbjct: 306 AGLDEQTVEMVSHFETIIYISCNPETLASNLAVLCNTHTVEMFALFDQFPYTDHMECGVL 365 Query: 362 LVRK 365 L +K Sbjct: 366 LKQK 369 >gi|325144927|gb|EGC67211.1| tRNA (uracil-5-)-methyltransferase [Neisseria meningitidis M01-240013] Length = 362 Score = 345 bits (885), Expect = 6e-93, Method: Compositional matrix adjust. Identities = 167/365 (45%), Positives = 234/365 (64%), Gaps = 11/365 (3%) Query: 7 IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66 + Y QQL +K D L+ + VP +++ S HYRMRAEF IWH+G ++++ MF++ Sbjct: 1 MSDYTQQLQDKKDHLKTLFAGLDVPEWEVYESPDKHYRMRAEFRIWHEGGEMFYAMFEKG 60 Query: 67 TKER----MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122 K +R D F S +N LM E++A LR + + +++L++ S + +VT+I Sbjct: 61 QKAGGASLIRCDRFDAASEAVNCLMPELIAVAAQSAELRNRWYAVEFLSTLSGEMLVTMI 120 Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182 YH+ LDD W ++ +IGR+ KI L +DYV E L V R YRQ Sbjct: 121 YHKRLDDEWM-----QAAQALQQQLDTSVIGRSRGQKIVLKQDYVTETLKVGNRDFRYRQ 175 Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 IE FTQPNA + MLEW A +G+ GDLLELYCGNGNF+L L+ F+RVLA EI+K Sbjct: 176 IEGGFTQPNAAVCQKMLEWACGAAEGLDGDLLELYCGNGNFTLPLSEKFERVLATEISKT 235 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPP 300 S+ AA++NI AN + N+KI R+S++EFT+A +REF RLKD I + Y F TIFVDPP Sbjct: 236 SISAAQWNIEANGIGNIKIARLSAEEFTEAYTGKREFKRLKDGGIALTDYAFSTIFVDPP 295 Query: 301 RSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360 R+G+D+ T+ +V + +I+YISCNP++L +L L TH +ER ALFDQFP+T H+E GV Sbjct: 296 RAGIDEETLKLVSQFDNIIYISCNPETLRANLDTLVETHAVERAALFDQFPFTHHIESGV 355 Query: 361 LLVRK 365 LL +K Sbjct: 356 LLKKK 360 >gi|332974198|gb|EGK11131.1| tRNA (uracil-5-)-methyltransferase [Kingella kingae ATCC 23330] Length = 359 Score = 345 bits (884), Expect = 9e-93, Method: Compositional matrix adjust. Identities = 166/362 (45%), Positives = 237/362 (65%), Gaps = 11/362 (3%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69 Y QL EK +RL + F +L I S YRMRAEF IWH+G+++ + MF +K Sbjct: 3 YLTQLQEKTERLHAQLAPFGASSLHIVPSAEQGYRMRAEFRIWHEGEEISYAMFQAGSKA 62 Query: 70 R----MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHR 125 +++ F INALM ++ I +L+ +L+Q ++L + S + ++TLIYH+ Sbjct: 63 SSASLIKLQQFPAAYSSINALMPVLLQRIAGCSVLKTRLYQCEFLATLSGEMLITLIYHK 122 Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIEN 185 LDD W++ A L+ L + +IGR+ KI L +D+V ERL V G T YRQ+E Sbjct: 123 KLDDEWQQAACTLQQELG-----VWIIGRSRGQKIVLQQDFVTERLNVHGETFQYRQLEG 177 Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 FTQPNA + MLEW +G GDLLELYCGNGNF+L L+RHF+RVLA E++K SV Sbjct: 178 GFTQPNAQVCEKMLEWACEQAQGAGGDLLELYCGNGNFTLPLSRHFNRVLATEVSKTSVA 237 Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK--DIDIHSYRFKTIFVDPPRSG 303 AA++NIAAN +N++I R+S++EF+ A REF RLK I++ Y F TIF+DPPR+G Sbjct: 238 AAQWNIAANRADNIRIARLSAEEFSAAFAGGREFTRLKQNGIELADYDFSTIFIDPPRAG 297 Query: 304 LDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363 +DD + +V + I+Y+SCNPD+LC +L+ L+ THT++ ALFDQFP+T H+E GV+L+ Sbjct: 298 VDDEMLKLVAQFDRIIYVSCNPDTLCANLATLTQTHTLQSAALFDQFPFTHHIESGVILL 357 Query: 364 RK 365 +K Sbjct: 358 KK 359 >gi|325142850|gb|EGC65218.1| tRNA (uracil-5-)-methyltransferase [Neisseria meningitidis 961-5945] Length = 362 Score = 344 bits (883), Expect = 1e-92, Method: Compositional matrix adjust. Identities = 167/365 (45%), Positives = 236/365 (64%), Gaps = 11/365 (3%) Query: 7 IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66 + Y QQL +K D L+ + VP +++ S HYRMRAEF IWH+G ++++ MF++ Sbjct: 1 MSDYTQQLQDKKDHLKTLFAGLDVPEWEVYESPDKHYRMRAEFRIWHEGGEMFYAMFEKG 60 Query: 67 TKER----MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122 K +R D F S +N LM E++A LR + + +++L++ S + +VT+I Sbjct: 61 QKAGGASLIRCDRFEAASEAVNRLMPELIAVAAQSAELRNRWYAVEFLSTLSGEMLVTMI 120 Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182 YH+ LD+ W ++ I +IGR+ KI L +DYV E L V R YRQ Sbjct: 121 YHKRLDNEWM-----QAAQALQQQLDISVIGRSRGQKIVLKQDYVTETLKVGNRDFHYRQ 175 Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 IE FTQPNA + MLEW A +G+ GDLLELYCGNGNF+L L+ F+RVLA EI+K Sbjct: 176 IEGGFTQPNAAVCRKMLEWACRAAEGLGGDLLELYCGNGNFTLPLSEKFERVLATEISKT 235 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPP 300 S+ AA++NI AN + N+KI R+S++EFT+A +REF RLKD I + Y F TIFVDPP Sbjct: 236 SISAAQWNIEANGIGNIKIARLSAEEFTEAYTGKREFKRLKDGGIALTDYAFSTIFVDPP 295 Query: 301 RSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360 R+G+D+ T+ +V + +I+YISCNP++L +L L+ TH +ER ALFDQFP+T H+E GV Sbjct: 296 RAGIDEETLKLVSQFDNIIYISCNPETLRANLDTLAETHAVERAALFDQFPFTHHIESGV 355 Query: 361 LLVRK 365 LL +K Sbjct: 356 LLKKK 360 >gi|218768699|ref|YP_002343211.1| tRNA (uracil-5-)-methyltransferase [Neisseria meningitidis Z2491] gi|304386842|ref|ZP_07369106.1| tRNA (uracil-5-)-methyltransferase [Neisseria meningitidis ATCC 13091] gi|20178169|sp|Q9JT82|TRMA_NEIMA RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|121052707|emb|CAM09050.1| tRNA (uracil-5-)-methyltransferase [Neisseria meningitidis Z2491] gi|304339096|gb|EFM05186.1| tRNA (uracil-5-)-methyltransferase [Neisseria meningitidis ATCC 13091] gi|319410932|emb|CBY91327.1| tRNA (uracil-5-)-methyltransferase (tRNA(M-5-U54)-methyltransferase; RUMT) [Neisseria meningitidis WUE 2594] Length = 362 Score = 344 bits (883), Expect = 1e-92, Method: Compositional matrix adjust. Identities = 168/365 (46%), Positives = 234/365 (64%), Gaps = 11/365 (3%) Query: 7 IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66 + Y QQL +K D L+ + VP +++ S HYRMRAEF IWH+G ++++ MF++ Sbjct: 1 MSDYTQQLQDKKDHLKTLFAGLDVPEWEVYESPDKHYRMRAEFRIWHEGGEMFYAMFEKG 60 Query: 67 TKER----MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122 K +R D F S +N LM E++A LR + + +++L++ S + +VT+I Sbjct: 61 QKAGGASLIRCDRFEAASEAVNRLMPELIAVAAQSAELRNRWYAVEFLSTLSGEMLVTMI 120 Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182 YH+ LDD W ++ +IGR+ KI L +DYV E L V R YRQ Sbjct: 121 YHKRLDDEWM-----QAAQALQQQLDTSVIGRSRGQKIVLKQDYVTETLKVGNRDFRYRQ 175 Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 IE FTQPNA + MLEW A +G+ GDLLELYCGNGNF+L L+ F+RVLA EI+K Sbjct: 176 IEGGFTQPNAAVCQKMLEWACGAAEGLGGDLLELYCGNGNFTLPLSEKFERVLATEISKT 235 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPP 300 SV AA++NI AN + N+KI R+S++EFT+A +REF RLKD I + Y F TIFVDPP Sbjct: 236 SVGAAQWNIEANGIGNIKIARLSAEEFTEAYTGKREFARLKDGGIALTDYAFSTIFVDPP 295 Query: 301 RSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360 R+G+D+ T+ +V + +I+YISCNP++L +L L TH +ER ALFDQFP+T H+E GV Sbjct: 296 RAGIDEETLKLVSQFDNIIYISCNPETLRANLDTLVETHVVERAALFDQFPFTHHIESGV 355 Query: 361 LLVRK 365 LL +K Sbjct: 356 LLKKK 360 >gi|15677527|ref|NP_274683.1| tRNA (uracil-5-)-methyltransferase [Neisseria meningitidis MC58] gi|20178170|sp|Q9JYA0|TRMA_NEIMB RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|7226932|gb|AAF42027.1| tRNA (uracil-5-)-methyltransferase [Neisseria meningitidis MC58] gi|316984826|gb|EFV63783.1| tRNA (uracil-5-)-methyltransferase [Neisseria meningitidis H44/76] gi|325140858|gb|EGC63368.1| tRNA (uracil-5-)-methyltransferase [Neisseria meningitidis CU385] gi|325199727|gb|ADY95182.1| tRNA (uracil-5-)-methyltransferase [Neisseria meningitidis H44/76] Length = 362 Score = 343 bits (881), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 167/365 (45%), Positives = 236/365 (64%), Gaps = 11/365 (3%) Query: 7 IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66 ++ Y QQL K D L+ + VP +++ S HYRMRAEF IWH+G ++++ MF++ Sbjct: 1 MNDYTQQLQGKKDYLKTLFAGLDVPEWEVYESPDKHYRMRAEFRIWHEGGEMFYAMFEKG 60 Query: 67 TKER----MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122 K +R D F S +N LM E++A P L+ + + +++L++ S + +VT+I Sbjct: 61 QKASGASMIRCDRFEAASEAVNRLMPELIAAAAQSPELKKRWYAVEFLSTLSGEMLVTMI 120 Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182 YH+ LD W ++ I +IGR+ KI L +DYV E L V R YRQ Sbjct: 121 YHKRLDAEWM-----QAAQALQQQLDISVIGRSRGQKIVLKQDYVTETLKVGNRDFRYRQ 175 Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 IE SFTQPNA + MLEW +G+ DLLELYCGNGNF+L L+R+F +VLA EI+K Sbjct: 176 IEGSFTQPNAAVCQKMLEWACRTAEGLGSDLLELYCGNGNFTLPLSRYFRQVLATEISKT 235 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPP 300 SV AA++NI AN + N+KI R+S++EFT+A +REF RLKD I + Y F TIFVDPP Sbjct: 236 SVSAAQWNIEANRIGNIKIARLSAEEFTEAYTGKREFKRLKDGGIALTDYAFSTIFVDPP 295 Query: 301 RSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360 R+G+D+ T+ +V + +I+YISCNP++L +L L+ TH +ER ALFDQFP+T H+E GV Sbjct: 296 RAGIDEETLKLVSQFDNIIYISCNPETLRANLDTLAETHAVERAALFDQFPFTHHIESGV 355 Query: 361 LLVRK 365 LL +K Sbjct: 356 LLKKK 360 >gi|327483052|gb|AEA77459.1| tRNA (Uracil54-C5-)-methyltransferase [Vibrio cholerae LMA3894-4] Length = 282 Score = 343 bits (880), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 160/278 (57%), Positives = 208/278 (74%), Gaps = 2/278 (0%) Query: 90 MMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQI 149 +M ++ P+LR KLFQ+D+L++ S + +V+L+YHR L + W A L+ L+ + + Sbjct: 4 LMDAMKGSPILRHKLFQVDFLSTLSGEILVSLLYHRQLSEEWITAAQALKQRLNDEGFNL 63 Query: 150 QLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGI 209 LIGRA K K+ LDRDYV E+L V G+ +Y+Q+EN FTQPNA + MLEW + T+ Sbjct: 64 NLIGRARKMKVVLDRDYVVEKLQVNGQPYVYKQVENCFTQPNAKVAEKMLEWAVDCTQES 123 Query: 210 QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269 +GDLLELYCGNGNFSL LA++F+RVLA E+AKPSVEAA++NIAAN + NV+I+RMS++EF Sbjct: 124 KGDLLELYCGNGNFSLALAQNFERVLATELAKPSVEAAQFNIAANQIGNVQIIRMSAEEF 183 Query: 270 TQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYISCNPDS 327 TQAM +REFNRLKD +D+ SYR TIFVDPPRSG+D T MVQ Y ILYISCNP++ Sbjct: 184 TQAMEGKREFNRLKDAGVDLQSYRCNTIFVDPPRSGMDIDTCKMVQGYERILYISCNPET 243 Query: 328 LCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 L +L +L TH + R ALFDQFPYT HME GV+L RK Sbjct: 244 LQENLQVLGETHQVVRFALFDQFPYTHHMEAGVMLERK 281 >gi|90021263|ref|YP_527090.1| tRNA (uracil-5-)-methyltransferase [Saccharophagus degradans 2-40] gi|122996287|sp|Q21KA1|TRMA_SACD2 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|89950863|gb|ABD80878.1| tRNA (uracil-5-)-methyltransferase [Saccharophagus degradans 2-40] Length = 365 Score = 342 bits (878), Expect = 4e-92, Method: Compositional matrix adjust. Identities = 164/358 (45%), Positives = 243/358 (67%), Gaps = 7/358 (1%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ-QTK 68 Y+QQL +K ++ F ++++ S P HYRMRAEF +W G + ++ M+ + K Sbjct: 13 YQQQLDDKEKATKEQFSDFWQGDIEVHPSPPSHYRMRAEFKMWQQGAEAFYAMYQPGEYK 72 Query: 69 ERMRIDY-FMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLL 127 + + +++ F G+ I LM +++ + LLR +LFQ+++LT+ + +++ TLIYH+ L Sbjct: 73 KPVTLEWEFSVGAEKIVELMPKLLEIVNASELLRKRLFQVEFLTTTTGESVTTLIYHKPL 132 Query: 128 DDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSF 187 + W+ A L +L+ +IGR+ K KI L +DYV+E LT++G Y+QIE+ F Sbjct: 133 TEEWQAEANALASSLNT-----HIIGRSKKQKIVLTQDYVEETLTISGTPFTYKQIESGF 187 Query: 188 TQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA 247 TQPNA + ML+W + AT + GDL+ELYCGNGNF+L L+++FD+VLA E++K SV+AA Sbjct: 188 TQPNAAVCQKMLQWAVDATANLGGDLVELYCGNGNFTLPLSKNFDKVLATEVSKTSVKAA 247 Query: 248 RYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307 YNI N N+ I RMSS+EFT+A+ REF RLKDI++ SY F T+FVDPPR+GLD+ Sbjct: 248 EYNIEKNGCKNITIARMSSEEFTEALNGVREFRRLKDIELDSYNFSTVFVDPPRAGLDED 307 Query: 308 TVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 T ++ + +I+YISCNPD+L +L+ L TH +ER ALFDQFPYT H ECGV+L +K Sbjct: 308 TEALISRFDNIIYISCNPDTLANNLANLCKTHKVERFALFDQFPYTDHRECGVILTKK 365 >gi|71907452|ref|YP_285039.1| tRNA (uracil-5-)-methyltransferase [Dechloromonas aromatica RCB] gi|123627504|sp|Q47F12|TRMA_DECAR RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|71847073|gb|AAZ46569.1| tRNA (uracil-5-)-methyltransferase [Dechloromonas aromatica RCB] Length = 362 Score = 342 bits (876), Expect = 7e-92, Method: Compositional matrix adjust. Identities = 177/357 (49%), Positives = 230/357 (64%), Gaps = 6/357 (1%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD-QQTK 68 Y QLA KV Q F V N I S P+HYRMRAEF IWH+GDDL + MFD K Sbjct: 11 YPTQLATKVAHFEQNFAPFGVANTAIHASAPLHYRMRAEFRIWHEGDDLNYAMFDPADPK 70 Query: 69 ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLD 128 + + ++ F P + I LM + +R LR +LFQ D+L + S + +VTLIYHR LD Sbjct: 71 QPITLETFPPAAESICHLMPRLRDKLRGNESLRRRLFQADFLATLSGEMLVTLIYHRQLD 130 Query: 129 DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFT 188 +AW A + L I LIGR+ KI LDRD+V E + GR L Y+Q+E SFT Sbjct: 131 EAWEAAAREMAAEL-----GIGLIGRSRGQKIVLDRDWVLEGFELNGRQLRYKQVEGSFT 185 Query: 189 QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248 QPN G+N ML W G G+L+ELYCGNGNF++ L+ F+RVLA E++K SV AA+ Sbjct: 186 QPNGGVNRQMLGWACQQAAGFGGNLVELYCGNGNFTIALSPLFERVLATEVSKSSVHAAQ 245 Query: 249 YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDAT 308 YN+AAN V NV +VRMSS+EF+ A+ EF RLKDID+ +R T+FVDPPRSGLD T Sbjct: 246 YNLAANQVENVALVRMSSEEFSNALAGREEFQRLKDIDLEPFRHATLFVDPPRSGLDAVT 305 Query: 309 VGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 + + + + ILYISCN ++L ++ L TH I+ A+FDQFPYT H+ECG+LL R+ Sbjct: 306 LELARGFDRILYISCNQETLRENVIALQDTHEIKASAVFDQFPYTHHLECGLLLTRR 362 >gi|217970373|ref|YP_002355607.1| tRNA (uracil-5-)-methyltransferase [Thauera sp. MZ1T] gi|217507700|gb|ACK54711.1| tRNA (uracil-5-)-methyltransferase [Thauera sp. MZ1T] Length = 368 Score = 340 bits (872), Expect = 2e-91, Method: Compositional matrix adjust. Identities = 170/364 (46%), Positives = 234/364 (64%), Gaps = 12/364 (3%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ-QT 67 +YE QLA K+ R R F +P +FRS P+HYR+RAEF +WH D + + MFD Sbjct: 10 RYEDQLAAKLARYRSDFAEFDLPEPAVFRSAPLHYRLRAEFRLWHHEDRIDYAMFDSADP 69 Query: 68 KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLL 127 K+ + ++ F + I LM + ++ LR K+FQ+D+L + S + +V+L+YHR L Sbjct: 70 KQPILLETFPAAAEPIAKLMPRLRDALQASEALRRKIFQVDFLATLSGECLVSLVYHRPL 129 Query: 128 DDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSF 187 D W A A IQ+IGR+ K KI L+RD+V E L V G+ L Y+Q E SF Sbjct: 130 DADWETAAR-----ALAAALDIQVIGRSRKQKIVLERDWVQEVLEVDGQRLRYQQFEGSF 184 Query: 188 TQPNAGINVHMLEWVLAATKGI------QGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241 TQPN G+N HML W A K + GDLLELYCGNGNF++ LA F RVLA E++K Sbjct: 185 TQPNGGVNQHMLAWARAQAKAVGARPQGPGDLLELYCGNGNFTVALAPLFGRVLATEMSK 244 Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301 SV AA N+A N V NV +VRM+S+E + A+ RE+ R++ +D+ YRF T+FVDPPR Sbjct: 245 TSVRAAHTNLADNGVANVTMVRMASEEISDALAGGREYRRMQGVDLAGYRFSTLFVDPPR 304 Query: 302 SGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVL 361 +GLD+ T+ + + + HILYISCNP++L +++ L+TTH I A FDQFPYT H+ECG+L Sbjct: 305 AGLDEGTIALAKGFEHILYISCNPETLRANVAALATTHRIAAAAAFDQFPYTHHLECGLL 364 Query: 362 LVRK 365 L R+ Sbjct: 365 LQRR 368 >gi|307545640|ref|YP_003898119.1| tRNA (uracil-5-)-methyltransferase [Halomonas elongata DSM 2581] gi|307217664|emb|CBV42934.1| tRNA (uracil-5-)-methyltransferase [Halomonas elongata DSM 2581] Length = 368 Score = 340 bits (871), Expect = 3e-91, Method: Compositional matrix adjust. Identities = 175/363 (48%), Positives = 239/363 (65%), Gaps = 11/363 (3%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF----D 64 +Y++QL K RL + F P L+++ S P HYR R EF +WH+GDDL++ MF D Sbjct: 10 RYDEQLDAKRARLVETFAPFAPPALEVYPSPPSHYRQRCEFRLWHEGDDLFYAMFEVDPD 69 Query: 65 QQTKERM-RIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIY 123 + K+R+ R+D + IN LM ++ +R P+LR KLFQ+++LT+ S +A+VTLIY Sbjct: 70 EPGKKRVVRLDDYPVAGRRINELMPRLLDAVRDRPVLRHKLFQVEFLTTLSGEALVTLIY 129 Query: 124 HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQI 183 HR LD+ W E A L AL I +IGRA K + L RD+V E L V GR L Y+Q+ Sbjct: 130 HRQLDEDWDEAARELEQAL-----DIMIIGRARKQRRVLTRDHVWECLEVDGRRLHYQQV 184 Query: 184 ENSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 ENSFTQPNA I ML W T G Q DL+ELYCGN NF++ LA +F RVLA EI++ Sbjct: 185 ENSFTQPNAEICRAMLTWARDVTAGSQQRDLVELYCGNANFTVALADNFRRVLATEISRT 244 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302 SV +AR N+ AN ++NV + RMS++EFTQA++ ++ R++ + Y F T+ VDPPR+ Sbjct: 245 SVASARENLEANGIDNVTVGRMSAEEFTQALKGDKGGRRVEAWALDEYDFSTVLVDPPRA 304 Query: 303 GLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362 GLD+A+ + Y I+YISCNPD+L +L L+ TH + R ALFDQFP+T H ECGVLL Sbjct: 305 GLDEASCRQLSEYERIVYISCNPDTLAHNLETLTQTHAVTRFALFDQFPWTHHCECGVLL 364 Query: 363 VRK 365 R+ Sbjct: 365 ERR 367 >gi|262370456|ref|ZP_06063782.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter johnsonii SH046] gi|262314798|gb|EEY95839.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter johnsonii SH046] Length = 360 Score = 339 bits (869), Expect = 4e-91, Method: Compositional matrix adjust. Identities = 168/364 (46%), Positives = 242/364 (66%), Gaps = 10/364 (2%) Query: 6 LIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ 65 + Y+QQL K++R+ F P+L++F+S H+RMRAEF IWH DD+++ MF++ Sbjct: 1 MTSSYQQQLDAKIERITAQFAEFTPPSLEVFQSPEKHFRMRAEFRIWHTEDDMFYAMFER 60 Query: 66 ---QTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122 K+ +RID F IN LM ++A ++ LL +LF++ +L + + +V+LI Sbjct: 61 DEDNQKKVIRIDDFPIADASINQLMPVLLAELKSNDLLSKRLFEVHFLATLKGEMLVSLI 120 Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182 Y LD+ W+ A +L + L+ I+LIGR+ K+ L ++V E L V R Y+Q Sbjct: 121 YRCPLDEQWQVLAKQLSEKLN-----IKLIGRSRGQKVVLTDEFVVEELQVFERKYQYKQ 175 Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 IE+SFTQPNA + MLEW A + DLLELYCGNGNF+L L+ F+RVLA E+AK Sbjct: 176 IESSFTQPNAQVCQKMLEWACNAAQQSNKDLLELYCGNGNFTLPLSTRFNRVLATELAKS 235 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPP 300 SV AA++NI NH++N+++ R+S+++FTQA EREF RL++ ID+ SY F T+FVDPP Sbjct: 236 SVYAAQWNIEQNHIDNIQVARLSAEDFTQAYNGEREFRRLQEANIDMSSYEFDTVFVDPP 295 Query: 301 RSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360 R+G+DD T+ ++Q + I+YISCNPD+L +L LS TH I + ALFDQFPYT H+E GV Sbjct: 296 RAGIDDETLKLIQRFERIIYISCNPDTLHDNLKTLSQTHKISQFALFDQFPYTHHVESGV 355 Query: 361 LLVR 364 LL + Sbjct: 356 LLEK 359 >gi|262376153|ref|ZP_06069383.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter lwoffii SH145] gi|262308754|gb|EEY89887.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter lwoffii SH145] Length = 360 Score = 338 bits (868), Expect = 7e-91, Method: Compositional matrix adjust. Identities = 170/364 (46%), Positives = 237/364 (65%), Gaps = 10/364 (2%) Query: 6 LIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ 65 + Y+QQL K++R+ +Q P L++F+S ++RMRAEF IWH DDL++ MF++ Sbjct: 1 MTSSYQQQLDAKIERISAQFAEYQPPALEVFQSPEKYFRMRAEFRIWHTEDDLFYAMFER 60 Query: 66 ---QTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122 K+ +RID F IN LM +++ + + L +LF++ +L + S Q +V+LI Sbjct: 61 DENNNKKVIRIDEFPIADRSINDLMPQLLEAFKADANLGHRLFEVHFLATLSGQVLVSLI 120 Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182 YHR LD++W A L A K I+LIGR+ K L +YV E L+V R Y+Q Sbjct: 121 YHRKLDESWEPAAKAL-----AEKLNIKLIGRSRGQKFVLTDEYVVEELSVFDRRYKYKQ 175 Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 IE+SFTQPNA + MLEW A + DLLELYCGNGNF+L L+ F RVLA E+AK Sbjct: 176 IESSFTQPNAQVCQKMLEWACDAAEQSDKDLLELYCGNGNFTLPLSTKFRRVLATELAKS 235 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPP 300 SV AA +NI N + N+++ R+S++EFTQA ER F RL++ IDI +Y F T+FVDPP Sbjct: 236 SVYAAEWNIEQNQIENIQVARLSAEEFTQAYNGERVFRRLQEAQIDISTYDFDTVFVDPP 295 Query: 301 RSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360 R+G+DD T+ ++Q + I+YISCNPD+L +L LS TH I + A+FDQFPYT H+E GV Sbjct: 296 RAGIDDETLKLLQRFQRIIYISCNPDTLYDNLKQLSQTHRISKFAMFDQFPYTHHVETGV 355 Query: 361 LLVR 364 LL + Sbjct: 356 LLEK 359 >gi|146281305|ref|YP_001171458.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas stutzeri A1501] gi|166988121|sp|A4VI15|TRMA_PSEU5 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|145569510|gb|ABP78616.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas stutzeri A1501] Length = 362 Score = 338 bits (867), Expect = 9e-91, Method: Compositional matrix adjust. Identities = 171/358 (47%), Positives = 234/358 (65%), Gaps = 6/358 (1%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTK 68 QY QLAEK RL +++ F P ++F S HYR+RAEF +W +G ++ MF+Q K Sbjct: 10 QYAAQLAEKAARLEELLAPFDAPAAEVFDSPREHYRLRAEFRLWREGGQRHYAMFEQGDK 69 Query: 69 ER-MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLL 127 + + ID F S IN LM ++ A + +L KLFQ+++LT+ S A++TL YHR L Sbjct: 70 HKAILIDDFPIASRRINELMPQLKAAWQASEVLSFKLFQVEFLTTLSGDALITLAYHRPL 129 Query: 128 DDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSF 187 D+AW+ A +L A + L+GR+ +I + RDYV+E+L VAGR+ YRQ E +F Sbjct: 130 DEAWQAEAEQL-----AADLGVSLVGRSKGKRIVIGRDYVEEQLVVAGRSFRYRQPEGAF 184 Query: 188 TQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA 247 TQPN + ML W A DLLELYCGNGNF+L LA RVLA EI+K SV AA Sbjct: 185 TQPNGEVCQKMLNWAHEALGERDDDLLELYCGNGNFTLPLATRVRRVLATEISKTSVNAA 244 Query: 248 RYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307 NI N ++N+++VR+S++E TQA+ R F RL ID+ SY F ++FVDPPR+G+D Sbjct: 245 LANIEDNGLDNIELVRLSAEELTQALNEVRPFRRLAGIDLKSYSFGSVFVDPPRAGMDPD 304 Query: 308 TVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 T + + + ILYISCNP++L ++++ L+ TH IER ALFDQFPYT HME GVLLVR+ Sbjct: 305 TCELTRRFERILYISCNPETLAQNIAQLADTHRIERCALFDQFPYTHHMEAGVLLVRR 362 >gi|255319354|ref|ZP_05360571.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter radioresistens SK82] gi|262379796|ref|ZP_06072952.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter radioresistens SH164] gi|255303747|gb|EET82947.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter radioresistens SK82] gi|262299253|gb|EEY87166.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter radioresistens SH164] Length = 361 Score = 338 bits (866), Expect = 1e-90, Method: Compositional matrix adjust. Identities = 168/361 (46%), Positives = 236/361 (65%), Gaps = 11/361 (3%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ---- 65 Y+ QL K+ R+ F P L++F S H+RMRAEF IWH D+++ MF++ Sbjct: 5 YQAQLEAKIQRISTQFAEFNPPALEVFGSPEQHFRMRAEFRIWHTDQDMFYAMFERNPED 64 Query: 66 QTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHR 125 Q K +R+D F IN LM ++A ++ +PLL +LF++D+L + S + +VTLIYHR Sbjct: 65 QQKTVIRVDEFPIADHSINQLMPILLAELKADPLLEKRLFEVDFLATLSGEMLVTLIYHR 124 Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIEN 185 LD+ W + A L A K I++IGR+ K+ L D+V E L V + Y+QIE Sbjct: 125 KLDNEWEKAARTL-----AEKLNIKIIGRSRGQKLVLTDDFVVEELQVLEQKFKYKQIEG 179 Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 FTQPNA + MLEW A + Q LLELYCGNGNF+L L+ F+RVLA E+AK SV Sbjct: 180 GFTQPNAIVCQKMLEWACKAAEASQKHLLELYCGNGNFTLPLSLKFERVLATELAKSSVY 239 Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK--DIDIHSYRFKTIFVDPPRSG 303 AA++NI N ++N+++ R+S++EFTQA EREF RL+ +IDI SY F T+FVDPPR+G Sbjct: 240 AAQWNIEQNGIDNIQVARLSAEEFTQAFNGEREFRRLQEAEIDIQSYEFDTVFVDPPRAG 299 Query: 304 LDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363 +D T+ ++Q + I+YISCNPD+L +L IL +H I + A+FDQFPYT H+E G+LL Sbjct: 300 IDLDTLKLLQRFDRIIYISCNPDTLHDNLKILLESHKILKFAMFDQFPYTHHVETGILLE 359 Query: 364 R 364 + Sbjct: 360 K 360 >gi|331005274|ref|ZP_08328666.1| tRNA (Uracil54-C5-)-methyltransferase [gamma proteobacterium IMCC1989] gi|330420951|gb|EGG95225.1| tRNA (Uracil54-C5-)-methyltransferase [gamma proteobacterium IMCC1989] Length = 384 Score = 338 bits (866), Expect = 1e-90, Method: Compositional matrix adjust. Identities = 168/366 (45%), Positives = 244/366 (66%), Gaps = 10/366 (2%) Query: 4 TLLIDQYEQQLAEKVDRLRQMML---AFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60 ++ +QY+ QL K+ RL+Q + + + P +++F S HYRMRAEF +WH+G+ ++ Sbjct: 24 SVFPEQYQAQLDTKITRLQQQLSEISSVEFPEIEVFESATEHYRMRAEFKVWHEGETSHY 83 Query: 61 IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVT 120 M D++TK+ + + F S IN LM ++A I +LR KLFQI++LT+ ++ +VT Sbjct: 84 AMSDKETKKPIFLTEFPVASQSINTLMPLLLAEINRCDVLRKKLFQIEFLTTLTEDMLVT 143 Query: 121 LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIY 180 IYH L + W E +++ ++ + +IGR+ K KI LDR YV+E L V RT Y Sbjct: 144 FIYHHPLSEKWVEKITPIKE-----QFSLNIIGRSRKQKIVLDRAYVNEELEVNKRTYSY 198 Query: 181 RQIENSFTQPNAGINVHMLEWVL--AATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVE 238 +Q E SFTQPNA + ML W + +A+ + DLLELYCGNGNF+L LA++F +V+A E Sbjct: 199 QQNEGSFTQPNAKVCEKMLSWAVKKSASAEPKKDLLELYCGNGNFTLPLAQNFRQVMATE 258 Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298 I+K SV +A+ NI N++ NV IVRMSS++F++AM + R F RLKDID+ SY F T+FVD Sbjct: 259 ISKSSVYSAQENIRRNNIENVTIVRMSSEDFSEAMDKVRPFRRLKDIDLDSYDFSTVFVD 318 Query: 299 PPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMEC 358 PPR+GLD T+ M+Q + I+Y+SCNP +L +L L TH++ LA FDQFPYT H+E Sbjct: 319 PPRAGLDQHTLQMIQKFDTIIYVSCNPTTLVENLHQLCKTHSVTDLAAFDQFPYTDHLES 378 Query: 359 GVLLVR 364 V+L R Sbjct: 379 AVILKR 384 >gi|254283016|ref|ZP_04957984.1| tRNA (uracil-5-)-methyltransferase [gamma proteobacterium NOR51-B] gi|219679219|gb|EED35568.1| tRNA (uracil-5-)-methyltransferase [gamma proteobacterium NOR51-B] Length = 366 Score = 337 bits (865), Expect = 1e-90, Method: Compositional matrix adjust. Identities = 166/360 (46%), Positives = 230/360 (63%), Gaps = 8/360 (2%) Query: 8 DQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ-Q 66 D+Y+ L KV L LA +F S +RMRAEF +WHD DDLY++MF Sbjct: 9 DRYQTLLDAKVKSLVPRFLALGASEPDVFTSPTTGFRMRAEFRVWHDDDDLYYVMFKPGD 68 Query: 67 TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL 126 K +RID+F I +M ++ +R +PLLR KLFQ+++L + + + +VTL+YHR Sbjct: 69 GKAPVRIDHFPIACDTIQQIMPRLLTAVRNKPLLRRKLFQVEFLATTTGELLVTLVYHRP 128 Query: 127 LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS 186 LD W+E A LR+ L+ + LIGR+ K KI L RD+V+ERLTV R +RQ E + Sbjct: 129 LDGQWQEAAEHLRNELN-----VSLIGRSRKQKIILGRDWVEERLTVDDRVYRFRQPEQA 183 Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246 FTQPNA +N M+ W I GDLLELYCG GNF+L LA FDRV+A E++KP+ A Sbjct: 184 FTQPNARVNTAMITWAKTQCHDIDGDLLELYCGIGNFTLPLASEFDRVIATEMSKPATAA 243 Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI--DIHSYRFKTIFVDPPRSGL 304 A YN N ++NV+ R+S+++ T A+R ER F RL + + YR T+ VDPPR+GL Sbjct: 244 ANYNREVNGIDNVEFARLSAEDMTAALRGERLFRRLAHLHKPLSDYRLSTLLVDPPRAGL 303 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D AT + + +LY+SCNP++L ++L +L+ TH I++ A+FDQFPYT H+EC VLL R Sbjct: 304 DPATEALATGFDTVLYVSCNPETLLKNLDVLTATHAIKQFAVFDQFPYTHHLECAVLLKR 363 >gi|94500651|ref|ZP_01307181.1| tRNA (uracil-5-)-methyltransferase [Oceanobacter sp. RED65] gi|94427206|gb|EAT12186.1| tRNA (uracil-5-)-methyltransferase [Oceanobacter sp. RED65] Length = 361 Score = 337 bits (864), Expect = 2e-90, Method: Compositional matrix adjust. Identities = 169/358 (47%), Positives = 234/358 (65%), Gaps = 6/358 (1%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTK 68 +Y QL EKV R+ + +F +PN+++F S P H+R RAEF +WHDGD +H MF+ K Sbjct: 8 EYSSQLNEKVTRIHKQFSSFAIPNIEVFESVPQHFRQRAEFRVWHDGDSCFHAMFEPGKK 67 Query: 69 -ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLL 127 + ++I +F S I LM +MM I LL+ KLFQI+YL + S +VTLIYH+ + Sbjct: 68 NDPIKIVHFDIASEAICELMPKMMERINDSHLLKHKLFQIEYLGTSSGDMLVTLIYHKPI 127 Query: 128 DDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSF 187 + W E A ++D L I +IGRA K ++ LD+D+V E L V G+ + Y+Q+E SF Sbjct: 128 TEEWIEKASAIKDEL-----GIHIIGRARKMRVPLDQDFVIETLEVDGKPIHYKQVEASF 182 Query: 188 TQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA 247 TQPNA IN ML W DLLELYCGNGNFSL LA + RV+A EI+K SV+AA Sbjct: 183 TQPNAYINQKMLSWARKQNCDSDRDLLELYCGNGNFSLALADRYRRVVATEISKTSVKAA 242 Query: 248 RYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307 A N+++NV R+S++EFT+ M+ ++ RL+D+ + S F T+ VDPPR+GLD+ Sbjct: 243 LDGKAMNNIDNVDFARVSAEEFTEHMKGGKQRRRLQDMGLESADFGTVLVDPPRAGLDED 302 Query: 308 TVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 + ++ Y +I+YISCNPD+L +L LS TH IE A+FDQFPYT H+ECGV L R+ Sbjct: 303 SCQLISEYDNIIYISCNPDTLQDNLEQLSKTHHIESFAVFDQFPYTHHIECGVYLTRR 360 >gi|90415962|ref|ZP_01223895.1| tRNA (uracil-5-)-methyltransferase [marine gamma proteobacterium HTCC2207] gi|90332336|gb|EAS47533.1| tRNA (uracil-5-)-methyltransferase [marine gamma proteobacterium HTCC2207] Length = 367 Score = 337 bits (863), Expect = 3e-90, Method: Compositional matrix adjust. Identities = 175/360 (48%), Positives = 230/360 (63%), Gaps = 9/360 (2%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69 Y L K++R + P +++F S +RMRAEF IWH+ ++ M K Sbjct: 11 YPAALNNKLERFYGTLDGLSFPEVEVFDSAASGFRMRAEFRIWHEDGVAHYAMNRPGEKR 70 Query: 70 RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDD 129 I F LI LM ++A+I L KLF +++LT+ S +A++TLIYHR +D+ Sbjct: 71 PYVISEFPIAGQLIGELMTPLLASINASTTLSRKLFSLEFLTTLSGEALITLIYHRPVDE 130 Query: 130 AWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQ 189 W+ A AL A ++ I +IGR+ K K L RDYV E LTV G Y+QIE+ FTQ Sbjct: 131 QWQLAA----KALEA-EHSIMVIGRSRKQKTVLTRDYVTECLTVDGVQYHYQQIESGFTQ 185 Query: 190 PNAGINVHMLEWVLAATKGI----QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 PNA +N ML W K I GDL+ELYCGNGNF+ VLA+HF VLA EI+K SV Sbjct: 186 PNAKVNEKMLSWASGCCKSIDDVASGDLVELYCGNGNFTAVLAQHFKSVLATEISKISVR 245 Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD 305 +A+ N A N VNNV +VRMSS+EFTQA+ ER F RLKDID++SY F TIFVDPPR+GLD Sbjct: 246 SAQTNFALNDVNNVTVVRMSSEEFTQALNGERPFRRLKDIDLNSYGFSTIFVDPPRAGLD 305 Query: 306 DATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 + T+ + Q + +ILYISCNP++L +L L+ TH I R A+FDQFP+T H+E GVLL R+ Sbjct: 306 EGTLQLAQRFDNILYISCNPETLRANLDSLTETHDIVRSAIFDQFPWTHHLESGVLLKRR 365 >gi|255065084|ref|ZP_05316939.1| tRNA (uracil-5-)-methyltransferase [Neisseria sicca ATCC 29256] gi|255050505|gb|EET45969.1| tRNA (uracil-5-)-methyltransferase [Neisseria sicca ATCC 29256] Length = 360 Score = 336 bits (861), Expect = 4e-90, Method: Compositional matrix adjust. Identities = 162/362 (44%), Positives = 238/362 (65%), Gaps = 11/362 (3%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69 Y QQL +K+ L+Q+ P +++F S HYRMRAEF IWH+G ++++ MF++ K Sbjct: 4 YTQQLDQKIQYLQQLFQGLDFPEIEVFESPEQHYRMRAEFRIWHEGGEMFYAMFERGQKA 63 Query: 70 R----MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHR 125 +R D F S INALM +++ P L+ + + +++L++ S + +VT+IYH+ Sbjct: 64 SGASLIRCDQFPAASESINALMPKLIEAAAQNPELKNRWYAVEFLSALSGEMLVTMIYHK 123 Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIEN 185 L +AW+ A L AR+ I +IGR+ KI L +DY+ E L V G+T YRQ+E Sbjct: 124 KLGEAWQRAAETL-----ARELGIHIIGRSRGQKIVLTQDYITEELNVNGKTFRYRQVEG 178 Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 SFTQPNA + ML W + + GDLLELYCGNGNF+L L++HF +VLA E++K SV Sbjct: 179 SFTQPNARVCEKMLGWACDVAQNLSGDLLELYCGNGNFTLPLSQHFRQVLATEVSKTSVY 238 Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSG 303 AA++NI AN +N+KI R+S++EFT+A + REF RL++ I + Y F IFVDPPR+G Sbjct: 239 AAQWNIEANRRDNIKIARLSAEEFTEAYTQSREFRRLQEQGISLKDYGFSAIFVDPPRAG 298 Query: 304 LDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363 +D+ T+ +V + +I+YISCN ++L +L L TH ++R ALFDQFP+T H+E GV L Sbjct: 299 VDEETLKLVSQFDNIIYISCNLETLRANLDTLCRTHAVKRAALFDQFPFTHHIESGVYLK 358 Query: 364 RK 365 +K Sbjct: 359 KK 360 >gi|104783723|ref|YP_610221.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas entomophila L48] gi|122401746|sp|Q1I4J8|TRMA_PSEE4 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|95112710|emb|CAK17438.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas entomophila L48] Length = 361 Score = 336 bits (861), Expect = 4e-90, Method: Compositional matrix adjust. Identities = 171/366 (46%), Positives = 231/366 (63%), Gaps = 6/366 (1%) Query: 1 MSGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60 MS QY+ QLA K RLR+++ F P +F S HYR+RAEF +W +G ++ Sbjct: 1 MSAVFDPSQYDAQLAAKAARLRELLAPFGAPEPSVFDSPREHYRLRAEFRLWREGGQRHY 60 Query: 61 IMFDQQTKER-MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119 MF K + + ID F S IN LM + A + L +LFQ+++LT+ + A+V Sbjct: 61 AMFAPGEKHKAILIDDFPIASQRINELMPRLKAAWQGNEDLNNRLFQVEFLTTLAGDAMV 120 Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179 TL YHR LD+AW A +L A + + +IGR+ ++ + RDY E L +AGRT Sbjct: 121 TLCYHRPLDEAWEAAAQQL-----ASELNVSVIGRSKGKRVVIGRDYAVENLDIAGRTFS 175 Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEI 239 YRQ E +FTQPN +N ML W A DLLELYCGNGNF+L LA +VLA EI Sbjct: 176 YRQPEGAFTQPNGAVNQKMLGWAFEAMGERDDDLLELYCGNGNFTLPLATRARQVLATEI 235 Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299 +K SV AA +N+ N V+NV++VR+S++E TQA+ R F RL+ ID+ SY F T+FVDP Sbjct: 236 SKTSVNAALHNLDENGVDNVRLVRLSAEELTQALNEVRPFRRLEGIDLKSYDFGTVFVDP 295 Query: 300 PRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359 PR+G+D T + + + ILYISCNP++L ++++ L TH IER ALFDQFPYT HME G Sbjct: 296 PRAGMDPDTCELTRRFERILYISCNPETLAQNIAQLQDTHRIERCALFDQFPYTHHMESG 355 Query: 360 VLLVRK 365 VLLVR+ Sbjct: 356 VLLVRR 361 >gi|327479464|gb|AEA82774.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas stutzeri DSM 4166] Length = 362 Score = 335 bits (860), Expect = 5e-90, Method: Compositional matrix adjust. Identities = 170/358 (47%), Positives = 234/358 (65%), Gaps = 6/358 (1%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTK 68 QY+ QLAEK RL +++ F P ++F S HYR+RAEF +W + ++ MF+Q K Sbjct: 10 QYDAQLAEKAARLEELLAPFDAPAAEVFDSPREHYRLRAEFRLWREDGQRHYAMFEQGDK 69 Query: 69 ER-MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLL 127 + + ID F S IN LM ++ A + +L KLFQ+++LT+ S A++TL YHR L Sbjct: 70 HKAILIDDFPIASRRINELMPQLKAAWQASEVLSFKLFQVEFLTTLSGDALITLAYHRPL 129 Query: 128 DDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSF 187 D+AW+ A +L A + L+GR+ +I + RDYV+E+L VAGR+ YRQ E +F Sbjct: 130 DEAWQAEAEQL-----AADLGVSLVGRSKGKRIVIGRDYVEEQLVVAGRSFRYRQPEGAF 184 Query: 188 TQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA 247 TQPN + ML W A DLLELYCGNGNF+L LA RVLA EI+K SV AA Sbjct: 185 TQPNGEVCQKMLNWTHEALGERDDDLLELYCGNGNFTLPLATRVRRVLATEISKTSVNAA 244 Query: 248 RYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307 NI N ++N+++VR+S++E TQA+ R F RL ID+ SY F ++FVDPPR+G+D Sbjct: 245 LANIEDNGLDNIELVRLSAEELTQALNEVRPFRRLAGIDLKSYSFGSVFVDPPRAGMDPD 304 Query: 308 TVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 T + + + ILYISCNP++L ++++ L+ TH IER ALFDQFPYT HME GVLLVR+ Sbjct: 305 TCELTRRFERILYISCNPETLAQNIAQLADTHRIERCALFDQFPYTHHMEAGVLLVRR 362 >gi|298369430|ref|ZP_06980748.1| tRNA (uracil-5-)-methyltransferase [Neisseria sp. oral taxon 014 str. F0314] gi|298283433|gb|EFI24920.1| tRNA (uracil-5-)-methyltransferase [Neisseria sp. oral taxon 014 str. F0314] Length = 362 Score = 335 bits (860), Expect = 6e-90, Method: Compositional matrix adjust. Identities = 162/362 (44%), Positives = 239/362 (66%), Gaps = 11/362 (3%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69 Y+QQL +K D L+++ P +++F S HYRMRAEF IWH+G ++++ MF++ K Sbjct: 4 YQQQLRDKTDYLKKLFQGLDFPEIEVFESPEQHYRMRAEFRIWHEGGEMFYAMFERGQKA 63 Query: 70 R----MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHR 125 +R D F S INALM +++ P L+ + + ++L++ S + +VT+IYH+ Sbjct: 64 SGASLIRCDQFPAASESINALMPKLIEAAAQNPELKNRWYAAEFLSALSGEMLVTMIYHK 123 Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIEN 185 L +AW+ A + AR+ I +IGR+ KI L + Y+ E L V G+T YRQ+E Sbjct: 124 KLGEAWQRAA-----EILARELGIHIIGRSRGQKIVLTQGYITEELNVNGKTFRYRQVEG 178 Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 SFTQPNA + ML W + + GDLLELYCGNGNF+L L+++F +VLA E++K SV Sbjct: 179 SFTQPNARVCEKMLGWACDVAQNLSGDLLELYCGNGNFTLPLSQYFRQVLATEVSKTSVY 238 Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSG 303 AA++NI AN +N+KI R+S++EFT+A + REF RL++ I + Y F IFVDPPR+G Sbjct: 239 AAQWNIEANQRDNIKIARLSAEEFTKAYTQSREFRRLQEQGILLKDYVFSAIFVDPPRAG 298 Query: 304 LDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363 +D+ T+ +V + +I+YISCNP++L +L L THT++R ALFDQFP+T H+E GV L Sbjct: 299 VDEETLKLVSQFDNIIYISCNPETLRANLDTLCRTHTVKRAALFDQFPFTHHIESGVWLE 358 Query: 364 RK 365 RK Sbjct: 359 RK 360 >gi|170719970|ref|YP_001747658.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas putida W619] gi|226705984|sp|B1J3Q4|TRMA_PSEPW RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|169757973|gb|ACA71289.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas putida W619] Length = 361 Score = 334 bits (856), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 172/366 (46%), Positives = 230/366 (62%), Gaps = 6/366 (1%) Query: 1 MSGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60 MS Y+ QL KV RLR+++ F P +F S HYR+RAEF +W + ++ Sbjct: 1 MSAAFDPSAYDAQLQAKVTRLRELLAPFGAPQPAVFDSPREHYRLRAEFRLWREDGQRHY 60 Query: 61 IMFDQQTKER-MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119 MF K + + ID F S INALM + A + L +LFQ+++LT+ + A+V Sbjct: 61 AMFAPGEKHKAILIDDFPIASERINALMPRLKAAWQASDELSNRLFQVEFLTTLAGDAMV 120 Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179 T+ YHR LDDAW A +L A + + LIGR+ ++ + RDY E+L VAGR Sbjct: 121 TMCYHRPLDDAWEVAARQL-----AEELGVSLIGRSKGKRLVIGRDYAVEKLDVAGRVFS 175 Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEI 239 YRQ E +FTQPN +N ML W A DLLELYCGNGNF+L LA +VLA EI Sbjct: 176 YRQPEGAFTQPNGAVNQKMLSWAYDAIGERDDDLLELYCGNGNFTLPLATRVRQVLATEI 235 Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299 +K SV AA N++ N V+NV++VR+S++E TQA+ R F RL+ ID+ SY F T+FVDP Sbjct: 236 SKTSVNAALSNLSENAVDNVRLVRLSAEELTQALNEVRPFRRLEGIDLKSYAFGTVFVDP 295 Query: 300 PRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359 PR+G+D T + + + ILYISCNP++L +++S L TH IER ALFDQFPYT HME G Sbjct: 296 PRAGMDPDTCELTRRFERILYISCNPETLAQNISQLQDTHRIERCALFDQFPYTHHMESG 355 Query: 360 VLLVRK 365 VLLVR+ Sbjct: 356 VLLVRR 361 >gi|258545841|ref|ZP_05706075.1| tRNA (uracil-5-)-methyltransferase [Cardiobacterium hominis ATCC 15826] gi|258518857|gb|EEV87716.1| tRNA (uracil-5-)-methyltransferase [Cardiobacterium hominis ATCC 15826] Length = 354 Score = 333 bits (855), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 169/358 (47%), Positives = 231/358 (64%), Gaps = 9/358 (2%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69 Y+ QL +K RLR ++ F P +IF S P YRMRAEF +WHDGD+ + M K Sbjct: 4 YQSQLDDKTRRLRALLAPFAAPEAEIFPSPPEGYRMRAEFRVWHDGDNCHFAMTGADGKP 63 Query: 70 RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDD 129 +RID F P IN LM ++ + P LR +LFQ ++ T+Q+ + +++LIYHR LDD Sbjct: 64 -LRIDTFPPAHAAINRLMPRVITALHDRPALRHRLFQAEFQTTQAGETMLSLIYHRPLDD 122 Query: 130 AWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQ 189 AW+E A A + + LIGRA + K + +D++ E V GR YRQ ENSF+Q Sbjct: 123 AWQEAA-----EALAAERGVHLIGRARREKRIIGQDHITETFCVGGRDYHYRQYENSFSQ 177 Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249 PNA + HML+W A G + DLLELYCGNGNF+L LA + RVLA E++K + A R Sbjct: 178 PNATVCQHMLDWA-TAQAGSRADLLELYCGNGNFTLPLAARYRRVLATEVSKNGIRALRA 236 Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK--DIDIHSYRFKTIFVDPPRSGLDDA 307 N+A N + N+ + R+S++E +A+R R F RL+ ID+ +Y F T+FVDPPR+G+D A Sbjct: 237 NLAENGIENIAVARLSAEELGEALRGVRPFRRLQQDGIDLATYDFDTVFVDPPRAGIDAA 296 Query: 308 TVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 T+ ++ YP ILYISCNP++L +L LS TH I ALFDQFP+T H+E GV+LVRK Sbjct: 297 TLALIARYPRILYISCNPETLADNLHTLSQTHRIRACALFDQFPFTPHIESGVVLVRK 354 >gi|325272411|ref|ZP_08138803.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas sp. TJI-51] gi|324102452|gb|EGB99906.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas sp. TJI-51] Length = 361 Score = 333 bits (853), Expect = 3e-89, Method: Compositional matrix adjust. Identities = 170/366 (46%), Positives = 230/366 (62%), Gaps = 6/366 (1%) Query: 1 MSGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60 MS Y QL KV RLR+++ F P +F S HYR+RAEF +W + ++ Sbjct: 1 MSAAFDPSSYAIQLDAKVARLRELLAPFGAPEPAVFDSPREHYRLRAEFRLWREDGQRHY 60 Query: 61 IMFDQQTKER-MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119 MF K + + ID F SL IN LM + A + L +LFQ+++LT+ + A++ Sbjct: 61 AMFAPGEKHKAILIDDFPIASLRINELMPRLKAAWQASEALGNRLFQVEFLTTLAGDAMI 120 Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179 TL YHR LD+AW A +L +AL + +IGR+ ++ + RDY E+L VAGR Sbjct: 121 TLCYHRPLDEAWEVAARQLSEAL-----SVSVIGRSKGKRLVIGRDYAVEKLDVAGRVFS 175 Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEI 239 YRQ E +FTQPN +N ML W A + DLLELYCGNGNF+L LA +VLA EI Sbjct: 176 YRQPEGAFTQPNGAVNQKMLSWAFEAMGEREDDLLELYCGNGNFTLPLATRVRQVLATEI 235 Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299 +K SV AA N+ N VNNV++VR+S++E TQA+ R F RL+ ID+ +Y F T+FVDP Sbjct: 236 SKTSVNAALSNLDENAVNNVRLVRLSAEELTQALNEVRPFRRLEGIDLKAYDFGTVFVDP 295 Query: 300 PRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359 PR+G+D T + + + ILYISCNP++L ++++ L TH IER ALFDQFPYT HME G Sbjct: 296 PRAGMDPDTCELTRRFERILYISCNPETLAQNIAQLQDTHRIERCALFDQFPYTHHMESG 355 Query: 360 VLLVRK 365 VLLVR+ Sbjct: 356 VLLVRR 361 >gi|325266048|ref|ZP_08132734.1| tRNA (uracil-5-)-methyltransferase [Kingella denitrificans ATCC 33394] gi|324982686|gb|EGC18312.1| tRNA (uracil-5-)-methyltransferase [Kingella denitrificans ATCC 33394] Length = 391 Score = 332 bits (850), Expect = 7e-89, Method: Compositional matrix adjust. Identities = 166/366 (45%), Positives = 233/366 (63%), Gaps = 15/366 (4%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69 Y QL K+ RL ++ F P +++F S YRMRAEF IWH+G + + MF+ +K Sbjct: 31 YNTQLNAKIQRLHTLLAPFGAPEIEVFASAEQGYRMRAEFRIWHEGGAMNYAMFEPGSKA 90 Query: 70 R----MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHR 125 +++ F P INALM ++ + + + R +L+Q ++L + S + +VTLIYH+ Sbjct: 91 SSASLIKLAQFPPAHERINALMPRLLDALSQQDVFRHRLYQCEFLCTLSGEMLVTLIYHK 150 Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIEN 185 LDD W++ A L+DAL I +IGR+ KI L DYV E LTV G+T YRQ+E Sbjct: 151 RLDDEWQKAACTLQDALG-----ISIIGRSRGQKIVLREDYVTETLTVCGQTYRYRQLEG 205 Query: 186 SFTQPNAGINVHMLEWVLAATKGIQG----DLLELYCGNGNFSLVLARHFDRVLAVEIAK 241 FTQPNA + MLEW A + DLLELYCGNGNF+L L+R F RVLA E++K Sbjct: 206 GFTQPNARVCEKMLEWACAQAEKAACTPPRDLLELYCGNGNFTLPLSRRFRRVLATEVSK 265 Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL--KDIDIHSYRFKTIFVDP 299 SV AA++NI AN +N+ I R+S++EFT+A R+F RL + I + Y F TIF+DP Sbjct: 266 TSVAAAQWNIQANGTDNIAIARLSAEEFTEAYTGARDFQRLTAQGIRLSDYDFSTIFIDP 325 Query: 300 PRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359 PR+G+D T+ +V + I+Y+SCNPD+L +L L+ THT++ ALFDQFP+T H+E G Sbjct: 326 PRAGVDSETLKLVAQFESIIYVSCNPDTLADNLQTLTQTHTVQAAALFDQFPFTPHIESG 385 Query: 360 VLLVRK 365 VLL +K Sbjct: 386 VLLAKK 391 >gi|238020705|ref|ZP_04601131.1| hypothetical protein GCWU000324_00595 [Kingella oralis ATCC 51147] gi|237867685|gb|EEP68691.1| hypothetical protein GCWU000324_00595 [Kingella oralis ATCC 51147] Length = 361 Score = 331 bits (849), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 172/364 (47%), Positives = 234/364 (64%), Gaps = 11/364 (3%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69 Y QLAEK RL ++ F P Q+F S YRMRAEF IWHD D + + MF K Sbjct: 3 YTAQLAEKTQRLAALLAPFAAPAPQVFPSPESGYRMRAEFRIWHDSDQISYAMFAHGQKA 62 Query: 70 R----MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHR 125 +++ +F INALM ++ + P L+ +L+Q ++L + S + +VTLIYHR Sbjct: 63 SSASLIKLTHFQAVHSSINALMPRLLHRLSGCPALQTRLYQCEFLATLSGEMLVTLIYHR 122 Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIEN 185 LDD W+ A L AR I +IGR+ KI L +D+V ERLTV G++ YRQ E Sbjct: 123 KLDDDWQVAARAL-----ARDLGIHIIGRSKGQKIVLSQDFVTERLTVNGQSYAYRQYEG 177 Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 SFTQPNA + ML W +G GDLLELYCGNGNF+L L+RHF RVLA E++K SV Sbjct: 178 SFTQPNAIVCQKMLAWACQQAQGAGGDLLELYCGNGNFTLPLSRHFRRVLATEVSKTSVA 237 Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSG 303 AA++NIA N V+N++I R+S++EFT+A R F RL + I + Y F TIF+DPPR+G Sbjct: 238 AAQWNIAHNQVDNIQIARLSAEEFTEAFSGCRTFRRLAESGIALADYDFSTIFIDPPRAG 297 Query: 304 LDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363 +D+AT+ +V + I+Y+SCNP++L +L L+ TH I+ ALFDQFP+T H+E GV+L Sbjct: 298 VDNATLQLVARFDRIIYVSCNPETLAANLQTLTQTHRIQAAALFDQFPFTPHIESGVMLT 357 Query: 364 RKPS 367 RK + Sbjct: 358 RKAA 361 >gi|146305866|ref|YP_001186331.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas mendocina ymp] gi|166988119|sp|A4XQI3|TRMA_PSEMY RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|145574067|gb|ABP83599.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas mendocina ymp] Length = 362 Score = 330 bits (846), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 169/357 (47%), Positives = 227/357 (63%), Gaps = 6/357 (1%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69 Y+ QLAEK RL +++ F P ++F S HYR+RAEF +W + ++ MF K Sbjct: 11 YDAQLAEKQQRLIELLAPFAAPEPEVFDSPREHYRLRAEFRLWREDGQRHYAMFAPGDKH 70 Query: 70 R-MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLD 128 + +D F SL IN LM + A R L KLFQ+++LT+ + A++TL YHR LD Sbjct: 71 TPILLDDFPIASLRINELMPRLRAAWRASEALSFKLFQVEFLTTLAGDALITLAYHRPLD 130 Query: 129 DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFT 188 +AW+ A +L A + + L+GR+ ++ + RDYV+E LTVAGR YRQ E +FT Sbjct: 131 EAWQAAAEKL-----ASELNVSLVGRSRGQRLVIGRDYVEEELTVAGRRFRYRQPEGAFT 185 Query: 189 QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248 QPN + ML W A DLLELYCGNGNF+L LA RVLA EI+K SV AA Sbjct: 186 QPNGAVCEKMLGWAYEALGERDDDLLELYCGNGNFTLPLATRVRRVLATEISKTSVNAAL 245 Query: 249 YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDAT 308 N+A N VNNV++VR+S++E TQA+ R F RL ID+ SY F ++FVDPPR+G+D T Sbjct: 246 ANLADNGVNNVELVRLSAEELTQALNEVRPFRRLAGIDLKSYDFGSVFVDPPRAGMDPDT 305 Query: 309 VGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 + + + ILYISCNP++L +++ LS TH + R ALFDQFPYT HME GVLL R+ Sbjct: 306 CELTRRFERILYISCNPETLAANIAQLSDTHQVTRCALFDQFPYTHHMEAGVLLERR 362 >gi|167035640|ref|YP_001670871.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas putida GB-1] gi|189036042|sp|B0KHR5|TRMA_PSEPG RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|166862128|gb|ABZ00536.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas putida GB-1] Length = 361 Score = 330 bits (846), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 170/366 (46%), Positives = 229/366 (62%), Gaps = 6/366 (1%) Query: 1 MSGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60 MS Y QL KV RLR+++ F P +F S HYR+RAEF +W + ++ Sbjct: 1 MSAAFDPSSYATQLDAKVARLRELLAPFGAPEPAVFDSPREHYRLRAEFRLWREDGQRHY 60 Query: 61 IMFDQQTKER-MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119 MF Q K + + ID F S INALM + A + L +LFQ+++LT+ + A++ Sbjct: 61 AMFAQGDKHKAILIDDFPIASQRINALMPRLKAAWQASEELGNRLFQVEFLTTLAGDAMI 120 Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179 T+ YHR LD+AW A +L +AL + +IGR+ ++ + RDY E L VAGR Sbjct: 121 TMCYHRPLDEAWEVEARQLAEALG-----VSVIGRSKGKRLVIGRDYAIEELDVAGRVFS 175 Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEI 239 YRQ E +FTQPN +N ML W A + DLLELYCGNGNF+L LA +VLA EI Sbjct: 176 YRQPEGAFTQPNGAVNQKMLSWAFEAIGEREDDLLELYCGNGNFTLPLATRVRQVLATEI 235 Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299 +K SV AA N+ N V+NV++VR+S++E TQA+ R F RL+ ID+ SY F T+FVDP Sbjct: 236 SKTSVNAALSNLDENAVDNVRLVRLSAEELTQALNEVRPFRRLEGIDLKSYEFGTVFVDP 295 Query: 300 PRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359 PR+G+D T + + + ILYISCNP++L +++ L TH IER ALFDQFPYT HME G Sbjct: 296 PRAGMDPDTCELTRRFERILYISCNPETLAANIAQLQDTHRIERCALFDQFPYTHHMESG 355 Query: 360 VLLVRK 365 VLLVR+ Sbjct: 356 VLLVRR 361 >gi|148549718|ref|YP_001269820.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas putida F1] gi|166988120|sp|A5W926|TRMA_PSEP1 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|148513776|gb|ABQ80636.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas putida F1] Length = 361 Score = 330 bits (845), Expect = 3e-88, Method: Compositional matrix adjust. Identities = 169/366 (46%), Positives = 230/366 (62%), Gaps = 6/366 (1%) Query: 1 MSGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60 MS Y QL KV RLR+++ F P +F S HYR+RAEF +W + ++ Sbjct: 1 MSAAFDPSSYATQLDAKVARLRELLAPFGAPEPAVFDSPREHYRLRAEFRLWREDGQRHY 60 Query: 61 IMFDQQTKER-MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119 MF K + + ID F S INALM + A + L +LFQ+++LT+ + A++ Sbjct: 61 AMFAPGEKHKAILIDDFPIASERINALMPRLKAAWQASEELGNRLFQVEFLTTLAGDAMI 120 Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179 T+ YHR LD+AW A +L +AL + +IGR+ ++ + RDY E+L VAGR Sbjct: 121 TMCYHRPLDEAWEVEARQLAEALG-----VSVIGRSKGKRLVIGRDYAVEKLDVAGRVFS 175 Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEI 239 YRQ E +FTQPN +N ML W A + DLLELYCGNGNF+L LA +VLA EI Sbjct: 176 YRQPEGAFTQPNGAVNQKMLSWAFEAMGDREDDLLELYCGNGNFTLPLATRVRQVLATEI 235 Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299 +K SV AA N+ N V+NV++VR+S++E TQA+ R F RL+ ID+ SY+F T+FVDP Sbjct: 236 SKTSVNAALSNLDENAVDNVRLVRLSAEELTQALNEVRPFRRLEGIDLKSYQFGTVFVDP 295 Query: 300 PRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359 PR+G+D T + + + ILYISCNP++L +++ L TH IER ALFDQFPYT HME G Sbjct: 296 PRAGMDPDTCELTRRFERILYISCNPETLAANIAQLQDTHRIERCALFDQFPYTHHMESG 355 Query: 360 VLLVRK 365 VLLVR+ Sbjct: 356 VLLVRR 361 >gi|28871786|ref|NP_794405.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas syringae pv. tomato str. DC3000] gi|50401547|sp|Q87WA0|TRMA_PSESM RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|28855038|gb|AAO58100.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas syringae pv. tomato str. DC3000] Length = 361 Score = 330 bits (845), Expect = 3e-88, Method: Compositional matrix adjust. Identities = 169/358 (47%), Positives = 225/358 (62%), Gaps = 6/358 (1%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF-DQQT 67 Y++QL EK RLR+++ F P Q+F S HYR+RAEF +W + Y+ MF Sbjct: 9 SYDRQLEEKTARLRELLAPFDAPEPQVFDSPREHYRLRAEFRLWREDQKRYYAMFAPGDN 68 Query: 68 KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLL 127 K + ++ S INALM + P L KLFQ+D+LT+ + A++T+ YHR L Sbjct: 69 KTPILLEGLPIASQRINALMPVLRERWEASPTLNHKLFQVDFLTTLAGDAMITMCYHRPL 128 Query: 128 DDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSF 187 DD W A +L A + + LIGR+ K+ + DYV E+L VAGRT YRQ E +F Sbjct: 129 DDEWLAAAEQL-----AVELDVSLIGRSKGQKLIIGHDYVTEKLDVAGRTFSYRQPEGAF 183 Query: 188 TQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA 247 TQPN +N ML W A Q DLLELYCGNGNF+L LA +VLA EI+K SV AA Sbjct: 184 TQPNGTVNGKMLNWAFDALGERQDDLLELYCGNGNFTLPLATRVRKVLATEISKTSVNAA 243 Query: 248 RYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307 N+ N V+NV +VR+S++E T+A+ R F RL+ ID+ SY F ++FVDPPR+G+D Sbjct: 244 LSNLDDNGVDNVTLVRLSAEELTEALNEVRPFRRLQGIDLKSYDFGSVFVDPPRAGMDPD 303 Query: 308 TVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 T + + + ILYISCNP++L +++ L TH IER ALFDQFPYT HME GVLLVR+ Sbjct: 304 TCELTRRFERILYISCNPETLAANIAQLYDTHRIERCALFDQFPYTHHMESGVLLVRR 361 >gi|26991338|ref|NP_746763.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas putida KT2440] gi|50401549|sp|Q88E14|TRMA_PSEPK RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|24986400|gb|AAN70227.1|AE016662_3 tRNA (uracil-5-)-methyltransferase [Pseudomonas putida KT2440] gi|313500558|gb|ADR61924.1| TrmA [Pseudomonas putida BIRD-1] Length = 361 Score = 329 bits (844), Expect = 4e-88, Method: Compositional matrix adjust. Identities = 169/366 (46%), Positives = 230/366 (62%), Gaps = 6/366 (1%) Query: 1 MSGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60 MS Y QL KV RLR+++ F P +F S HYR+RAEF +W + ++ Sbjct: 1 MSAAFDPSSYATQLDAKVARLRELLAPFGAPEPAVFDSPREHYRLRAEFRLWREDGQRHY 60 Query: 61 IMFDQQTKER-MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119 MF K + + ID F S INALM + A + L +LFQ+++LT+ + A++ Sbjct: 61 AMFAPGEKHKAILIDDFPIASERINALMPRLKAAWQASEELGNRLFQVEFLTTLAGDAMI 120 Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179 T+ YHR LD+AW A +L +AL + +IGR+ ++ + RDY E+L VAGR Sbjct: 121 TMCYHRPLDEAWEVEARQLAEALG-----VSVIGRSKGKRLVIGRDYAVEKLDVAGRVFS 175 Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEI 239 YRQ E +FTQPN +N ML W A + DLLELYCGNGNF+L LA +VLA EI Sbjct: 176 YRQPEGAFTQPNGAVNQKMLSWAFEAIGEREDDLLELYCGNGNFTLPLATRVRQVLATEI 235 Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299 +K SV AA N+ N V+NV++VR+S++E TQA+ R F RL+ ID+ SY+F T+FVDP Sbjct: 236 SKTSVNAALSNLDENAVDNVRLVRLSAEELTQALNEVRPFRRLEGIDLKSYQFGTVFVDP 295 Query: 300 PRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359 PR+G+D T + + + ILYISCNP++L +++ L TH IER ALFDQFPYT HME G Sbjct: 296 PRAGMDPDTCELTRRFERILYISCNPETLAANIAQLQDTHRIERCALFDQFPYTHHMESG 355 Query: 360 VLLVRK 365 VLLVR+ Sbjct: 356 VLLVRR 361 >gi|119897603|ref|YP_932816.1| tRNA (uracil-5-)-methyltransferase [Azoarcus sp. BH72] gi|262827635|sp|A1K524|TRMA_AZOSB RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|119670016|emb|CAL93929.1| tRNA (uracil-5-)-methyltransferase [Azoarcus sp. BH72] Length = 364 Score = 329 bits (844), Expect = 4e-88, Method: Compositional matrix adjust. Identities = 170/355 (47%), Positives = 230/355 (64%), Gaps = 6/355 (1%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTK 68 +YE QLA K+ R + +P ++FRSEP+HYR+RAEF IWH L + MFD Sbjct: 10 EYETQLAAKIARFKSDFAPLDLPEPEVFRSEPLHYRLRAEFRIWHSEGRLDYAMFDPADP 69 Query: 69 ER-MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLL 127 +R + ID F + I A M + + LR KLFQ+++L + S + +++L+YHR L Sbjct: 70 KRPVLIDGFPAAAAPIAAAMPVLRERVMASEPLRRKLFQVEFLATLSGELMISLVYHRPL 129 Query: 128 DDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSF 187 + W A L A+ +QLIGR+ K KI L+RD+V E + GRTL Y+QIE SF Sbjct: 130 EADWEAAARELAAAM-----GVQLIGRSRKQKIVLERDWVLESFELDGRTLHYQQIEGSF 184 Query: 188 TQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA 247 +QPN G+N ML W +G DLLELYCGNGNF++ LA F +VLA E++K SV AA Sbjct: 185 SQPNGGVNRQMLVWARRQAEGSGADLLELYCGNGNFTVALAPLFGKVLATEMSKSSVRAA 244 Query: 248 RYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307 YN+AAN V+NV +VRM+S+E + A+ R + R++ ID+ YRF T+FVDPPRSGLD+A Sbjct: 245 HYNLAANAVDNVTMVRMASEEISDALAGGRAYRRMQGIDLAGYRFGTLFVDPPRSGLDEA 304 Query: 308 TVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362 TV + + + ILYISCNP +L +++ L TH I A FDQFPYT H+ECGVLL Sbjct: 305 TVALARRFDRILYISCNPQTLHDNIAALRDTHGIAAAAAFDQFPYTHHLECGVLL 359 >gi|225024625|ref|ZP_03713817.1| hypothetical protein EIKCOROL_01502 [Eikenella corrodens ATCC 23834] gi|224942588|gb|EEG23797.1| hypothetical protein EIKCOROL_01502 [Eikenella corrodens ATCC 23834] Length = 364 Score = 328 bits (841), Expect = 7e-88, Method: Compositional matrix adjust. Identities = 169/363 (46%), Positives = 241/363 (66%), Gaps = 11/363 (3%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTK 68 +Y QL +K L+Q F Q+F S HYRMRAEF +WHDGD++ + MF+ K Sbjct: 7 EYTAQLQQKAGYLKQRFAEFSPSEWQVFASPEKHYRMRAEFRVWHDGDNISYAMFEPGQK 66 Query: 69 ERM----RIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 RID S INA+M ++A ++ +PLLR + +Q ++L++ S +V +IYH Sbjct: 67 AGSASLRRIDSLPAASAAINAVMPRLLAAVQADPLLRERWYQCEFLSTLSGDMLVGMIYH 126 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + L W+ A RL+ R+ I +IGR+ K+ L +D+V ERL GR +YRQ E Sbjct: 127 KRLCGQWQAAAARLQ-----RELGIMIIGRSRGQKLVLAQDFVTERLHADGRDWLYRQYE 181 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 F+QPNA + ML+W A G+ GDLLELYCGNGNF+L LAR+F RVLA E++K SV Sbjct: 182 GGFSQPNALVCQKMLDWACGAAAGLGGDLLELYCGNGNFTLPLARYFRRVLATELSKTSV 241 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRS 302 +AA++NI AN V N+++ R+S++EFTQA R F RL++ I++ Y F T+FVDPPR+ Sbjct: 242 QAAQWNIEANGVANIRLARLSAEEFTQAYHGVRTFRRLQEQGIELADYAFSTVFVDPPRA 301 Query: 303 GLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362 G+DDAT+ ++Q + +I+Y+SCNP++L +L+ L+ TH IER ALFDQFP+T H+E GVLL Sbjct: 302 GIDDATLRLLQNFDNIIYVSCNPETLHANLTTLTQTHRIERAALFDQFPFTPHIESGVLL 361 Query: 363 VRK 365 R+ Sbjct: 362 RRR 364 >gi|213966776|ref|ZP_03394927.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas syringae pv. tomato T1] gi|301383285|ref|ZP_07231703.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas syringae pv. tomato Max13] gi|302062476|ref|ZP_07254017.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas syringae pv. tomato K40] gi|302133458|ref|ZP_07259448.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213928626|gb|EEB62170.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas syringae pv. tomato T1] gi|331018924|gb|EGH98980.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 361 Score = 328 bits (841), Expect = 8e-88, Method: Compositional matrix adjust. Identities = 168/358 (46%), Positives = 225/358 (62%), Gaps = 6/358 (1%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF-DQQT 67 Y++QL EK RLR+++ F P Q+F S HYR+RAEF +W + Y+ MF Sbjct: 9 SYDRQLEEKTVRLRELLAPFDAPEPQVFDSPREHYRLRAEFRLWREDQKRYYAMFAPGDN 68 Query: 68 KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLL 127 K + ++ S INALM + P L KLFQ+D+LT+ + A++T+ YHR L Sbjct: 69 KTPILLEGLPIASERINALMPVLRERWEASPTLNHKLFQVDFLTTLAGDAMITMCYHRPL 128 Query: 128 DDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSF 187 DD W A +L A + + LIGR+ K+ + DYV E+L VAGRT YRQ E +F Sbjct: 129 DDEWLAAAEQL-----AVELDVSLIGRSKGQKLIIGHDYVTEKLDVAGRTFSYRQPEGAF 183 Query: 188 TQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA 247 TQPN +N ML W A Q DLLELYCGNGNF+L LA +VLA EI+K SV AA Sbjct: 184 TQPNGTVNGKMLNWAFDALGERQDDLLELYCGNGNFTLPLATRVRKVLATEISKTSVNAA 243 Query: 248 RYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307 N+ N V+NV +VR+S++E T+A+ R F RL+ +D+ SY F ++FVDPPR+G+D Sbjct: 244 LSNLDDNGVDNVTLVRLSAEELTEALNEVRPFRRLQGVDLKSYDFGSVFVDPPRAGMDPD 303 Query: 308 TVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 T + + + ILYISCNP++L +++ L TH IER ALFDQFPYT HME GVLLVR+ Sbjct: 304 TCELTRRFERILYISCNPETLAANIAQLYDTHRIERCALFDQFPYTHHMESGVLLVRR 361 >gi|92113465|ref|YP_573393.1| tRNA (uracil-5-)-methyltransferase [Chromohalobacter salexigens DSM 3043] gi|91796555|gb|ABE58694.1| tRNA (uracil-5-)-methyltransferase [Chromohalobacter salexigens DSM 3043] Length = 391 Score = 328 bits (840), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 171/364 (46%), Positives = 234/364 (64%), Gaps = 11/364 (3%) Query: 8 DQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF---- 63 ++YE QL K +R+ F P L++F S P HYR R EF +WH+GDDL++ MF Sbjct: 27 ERYEAQLDAKRERVTAQFARFSPPALEVFPSPPSHYRQRCEFRLWHEGDDLFYAMFEVDP 86 Query: 64 -DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122 D + KE +R+D + S INALM + + +LR KLFQ+++LT+ S +A+VTLI Sbjct: 87 SDPKRKEVIRLDDYPVASERINALMPALREALLASDVLRRKLFQVEFLTTLSGEALVTLI 146 Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182 YHR LD AW + A L+ L + +IGRA K ++ LDRD+V ERL V GR +Y+Q Sbjct: 147 YHRQLDAAWEQEARALQTTLG-----VSIIGRARKQRLVLDRDHVWERLQVEGREFVYQQ 201 Query: 183 IENSFTQPNAGINVHMLEWVLAATK-GIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241 +ENSFTQPNA I ML W T+ +GDL+E YCGNGNF++ LA +F RV+A EI++ Sbjct: 202 VENSFTQPNAAICQSMLGWARDVTRESREGDLVEFYCGNGNFTVALAENFRRVVATEISR 261 Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301 SV +A N+ AN V N + RMS++EF+ A+ E+ R+ + + + F T VDPPR Sbjct: 262 TSVASANVNLEANAVANAVVARMSAEEFSAALAGEKTGRRVAALALDEHTFTTALVDPPR 321 Query: 302 SGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVL 361 +GLD + ++ Y I+YISCNPD+L +L LS TH + R ALFDQFPYT H ECGVL Sbjct: 322 AGLDAHSCEQLKVYERIVYISCNPDTLEANLEQLSATHVVTRFALFDQFPYTDHCECGVL 381 Query: 362 LVRK 365 L R+ Sbjct: 382 LERR 385 >gi|134035057|sp|Q1QXW4|TRMA_CHRSD RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT Length = 373 Score = 327 bits (839), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 171/364 (46%), Positives = 234/364 (64%), Gaps = 11/364 (3%) Query: 8 DQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF---- 63 ++YE QL K +R+ F P L++F S P HYR R EF +WH+GDDL++ MF Sbjct: 9 ERYEAQLDAKRERVTAQFARFSPPALEVFPSPPSHYRQRCEFRLWHEGDDLFYAMFEVDP 68 Query: 64 -DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122 D + KE +R+D + S INALM + + +LR KLFQ+++LT+ S +A+VTLI Sbjct: 69 SDPKRKEVIRLDDYPVASERINALMPALREALLASDVLRRKLFQVEFLTTLSGEALVTLI 128 Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182 YHR LD AW + A L+ L + +IGRA K ++ LDRD+V ERL V GR +Y+Q Sbjct: 129 YHRQLDAAWEQEARALQTTLG-----VSIIGRARKQRLVLDRDHVWERLQVEGREFVYQQ 183 Query: 183 IENSFTQPNAGINVHMLEWVLAATK-GIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241 +ENSFTQPNA I ML W T+ +GDL+E YCGNGNF++ LA +F RV+A EI++ Sbjct: 184 VENSFTQPNAAICQSMLGWARDVTRESREGDLVEFYCGNGNFTVALAENFRRVVATEISR 243 Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301 SV +A N+ AN V N + RMS++EF+ A+ E+ R+ + + + F T VDPPR Sbjct: 244 TSVASANVNLEANAVANAVVARMSAEEFSAALAGEKTGRRVAALALDEHTFTTALVDPPR 303 Query: 302 SGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVL 361 +GLD + ++ Y I+YISCNPD+L +L LS TH + R ALFDQFPYT H ECGVL Sbjct: 304 AGLDAHSCEQLKVYERIVYISCNPDTLEANLEQLSATHVVTRFALFDQFPYTDHCECGVL 363 Query: 362 LVRK 365 L R+ Sbjct: 364 LERR 367 >gi|88800040|ref|ZP_01115610.1| tRNA (uracil-5-)-methyltransferase [Reinekea sp. MED297] gi|88777166|gb|EAR08371.1| tRNA (uracil-5-)-methyltransferase [Reinekea sp. MED297] Length = 362 Score = 327 bits (839), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 166/364 (45%), Positives = 237/364 (65%), Gaps = 15/364 (4%) Query: 8 DQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF-DQQ 66 DQY++QLA+K DRL+ ++ A+ P L IF S HYRMRAEF WH+G+ Y+ MF + Sbjct: 8 DQYDRQLADKTDRLKVLLDAWDHPELNIFSSTSAHYRMRAEFRFWHEGERSYYAMFRPED 67 Query: 67 TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL 126 + + + F + L N LM ++ + +P LR +LFQ+++LT+QS A++TLIYHR Sbjct: 68 RRTPVEVVDFPVATELCNDLMTKVRNAVHEDPELRNRLFQVEFLTTQSGDALITLIYHRQ 127 Query: 127 LDDAWRECAIRLRDALHARKYQIQ----LIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182 LD W E AR +Q Q +IGRA K ++ LDRDYV E L++ GR + Q Sbjct: 128 LDSNWEE---------RARYWQEQWGYPVIGRARKLRLVLDRDYVTETLSILGRDFHFHQ 178 Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241 ENSFTQPNAG+ M++W + ++G + DLLELYCGNGNFS+ LA++F RVL EI++ Sbjct: 179 YENSFTQPNAGVCEQMIQWAVEHSQGRESADLLELYCGNGNFSIPLAQNFRRVLGTEISR 238 Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301 SV++A+ NIA N V+NV I RM+S++ ++A R ++ I Y F TI VDPPR Sbjct: 239 TSVKSAQENIALNQVDNVSIARMASEDLSKAWLHNEPNRRFREFRIDDYDFDTILVDPPR 298 Query: 302 SGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVL 361 +GLD+ TV +++ + I+YISCNP+S+ +++ L + + ALFDQFPYT HME GV+ Sbjct: 299 AGLDEDTVELLKKFRRIIYISCNPESMVKNIEALRGQYRMTATALFDQFPYTHHMEAGVI 358 Query: 362 LVRK 365 L R Sbjct: 359 LERN 362 >gi|330938145|gb|EGH41857.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas syringae pv. pisi str. 1704B] Length = 361 Score = 324 bits (830), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 166/358 (46%), Positives = 222/358 (62%), Gaps = 6/358 (1%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTK 68 Y++QL EK RLR+++ F P Q+F S HYR+RAEF +W + Y+ MF Sbjct: 9 SYDRQLEEKTVRLRELLAPFDAPEPQVFDSPREHYRLRAEFRLWREDQKRYYAMFAPGDN 68 Query: 69 ERMRIDYFMP-GSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLL 127 + +P S INALM + P L KLFQ+D+LT+ + A++TL YHR L Sbjct: 69 RTPILLEGLPIASERINALMPVLRERWEASPTLNHKLFQVDFLTTLAGDAMITLCYHRPL 128 Query: 128 DDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSF 187 D W+ +L A + + LIGR+ K+ + DYV E+L VAGRT YRQ E +F Sbjct: 129 DAEWQAAVEQL-----AAELDVSLIGRSKGQKLVIGHDYVTEKLDVAGRTFSYRQPEGAF 183 Query: 188 TQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA 247 TQPN +N ML W A Q DLLELYCGNGNF+L LA +VLA EI+K SV AA Sbjct: 184 TQPNGTVNGKMLNWAFDALGERQDDLLELYCGNGNFTLPLASRVRKVLATEISKTSVNAA 243 Query: 248 RYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307 N+ N V+NV +VR+S++E T+A+ R F RL +D+ SY F ++FVDPPR+G+D Sbjct: 244 LSNLDDNGVDNVTLVRLSAEELTEALNEVRPFRRLHGVDLKSYDFGSVFVDPPRAGMDPD 303 Query: 308 TVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 T + + + ILYISCNP++L +++ L TH +ER ALFDQFPYT HME GVLLVR+ Sbjct: 304 TCELTRRFERILYISCNPETLAANIAQLHDTHRVERCALFDQFPYTHHMESGVLLVRR 361 >gi|330961636|gb|EGH61896.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas syringae pv. maculicola str. ES4326] Length = 361 Score = 323 bits (828), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 166/358 (46%), Positives = 225/358 (62%), Gaps = 6/358 (1%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF-DQQT 67 Y++QL EK RLR+++ F P Q+F S HYR+RAEF +W + Y+ MF + Sbjct: 9 SYDRQLEEKTVRLRELLAPFDAPEPQVFDSPREHYRLRAEFRLWREDQKRYYAMFAPGEN 68 Query: 68 KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLL 127 + + ++ S INALM + P L KLFQ+D+LT+ + A++T+ YHR L Sbjct: 69 RTPILLEGLPIASERINALMPVLRERWEASPTLNHKLFQVDFLTTLAGDAMITMCYHRPL 128 Query: 128 DDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSF 187 DDAW+ A A+ + LIGR+ K+ + DYV E+L VA RT YRQ E +F Sbjct: 129 DDAWQAEA-----EALAQALDVSLIGRSKGQKLVIGHDYVTEKLDVASRTFSYRQPEGAF 183 Query: 188 TQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA 247 TQPN +N ML W A Q DLLELYCGNGNF+L LA +VLA EI+K SV AA Sbjct: 184 TQPNGTVNGKMLNWAYDALGERQDDLLELYCGNGNFTLPLATRVRKVLATEISKTSVNAA 243 Query: 248 RYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307 N+ N VNNV +VR+S++E T+A+ R F RL+ +D+ SY F ++FVDPPR+G+D Sbjct: 244 LSNLDDNGVNNVTLVRLSAEELTEALNEVRPFRRLQGVDLKSYEFGSVFVDPPRAGMDPD 303 Query: 308 TVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 T + + + ILYISCNP++L +++ L TH +ER ALFDQFPYT HME GVLLVR+ Sbjct: 304 TCELTRRFERILYISCNPETLAANIAQLHDTHRVERCALFDQFPYTHHMESGVLLVRR 361 >gi|146329832|ref|YP_001210047.1| tRNA (uracil-5-)-methyltransferase [Dichelobacter nodosus VCS1703A] gi|262827669|sp|A5EXH9|TRMA_DICNV RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|146233302|gb|ABQ14280.1| tRNA (uracil-5)-methyltransferase [Dichelobacter nodosus VCS1703A] Length = 361 Score = 323 bits (828), Expect = 3e-86, Method: Compositional matrix adjust. Identities = 163/366 (44%), Positives = 233/366 (63%), Gaps = 10/366 (2%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 + + Y++QL K +L ++ F P ++I+ S HYRMRAEF IW D + L++ M Sbjct: 1 MTMSNYQRQLFAKHQQLHALLRPFSAPKIRIYPSPEKHYRMRAEFRIWRDDEQLFYAMSR 60 Query: 65 Q---QTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTL 121 + +R+ F P + I+ M ++ +R +P+L KL+++ +L S + +V+L Sbjct: 61 GGALTAQNIVRLHNFPPAYITIDRCMPLLLDALRADPVLHHKLYEVHFLASLRGELLVSL 120 Query: 122 IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYR 181 IYHR L D W A L A+++ I LIGR+ K KI L+RD++ E L V GR Y Sbjct: 121 IYHRALTDEWTAAAKAL-----AKRFHILLIGRSRKQKITLERDFILETLNVDGRAFHYH 175 Query: 182 QIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241 Q E SF+QPNA + ML W A GDLLELYCGNGNF+L LA HF RVLA EI+K Sbjct: 176 QYEQSFSQPNAYVCQKMLRWACAQAGENAGDLLELYCGNGNFTLPLASHFRRVLATEISK 235 Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDP 299 S+ A + NI N NN+ + R+S++EFTQA ++ER+F RLK I++ Y+F+T+FVDP Sbjct: 236 SSITALQENIFLNQTNNIAVARLSAEEFTQAWQKERDFYRLKQAGIELADYQFETVFVDP 295 Query: 300 PRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359 PR+G+DD T+ ++Q +P I+YISCNP +L +L L+ TH + ALFDQFP T H+ECG Sbjct: 296 PRAGIDDNTLFLLQKFPKIIYISCNPHTLAANLQTLTQTHELCAAALFDQFPDTPHIECG 355 Query: 360 VLLVRK 365 V+L +K Sbjct: 356 VVLRKK 361 >gi|237801466|ref|ZP_04589927.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas syringae pv. oryzae str. 1_6] gi|331024325|gb|EGI04382.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas syringae pv. oryzae str. 1_6] Length = 361 Score = 323 bits (828), Expect = 3e-86, Method: Compositional matrix adjust. Identities = 168/366 (45%), Positives = 227/366 (62%), Gaps = 6/366 (1%) Query: 1 MSGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60 MS + Y++QL EK RLR+++ F P Q+F S HYR+RAEF +W + Y+ Sbjct: 1 MSVSFDPASYDRQLEEKTVRLRELLAPFDAPEPQVFDSPREHYRLRAEFRLWREDQKRYY 60 Query: 61 IMF-DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119 MF K + ++ S INALM + L KLFQ+D+LT+ + A++ Sbjct: 61 AMFAPGDNKTPILLEGLPIASERINALMPVLRERWEASLTLNHKLFQVDFLTTLAGDAMI 120 Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179 TL YHR LDD W A L A++ + +IGR+ K+ + DYV E+L VAGRT Sbjct: 121 TLCYHRPLDDQWMAEAETL-----AKELDVSVIGRSKGQKLIIGHDYVTEKLDVAGRTFS 175 Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEI 239 YRQ E +FTQPN +N ML W A + DLLELYCGNGNF+L LA +VLA EI Sbjct: 176 YRQPEGAFTQPNGTVNGKMLNWAFDALGEREDDLLELYCGNGNFTLPLATRVRKVLATEI 235 Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299 +K SV AA N+ N V+NV +VR+S++E T+A+ R F RLK +D+ SY F ++FVDP Sbjct: 236 SKTSVNAALSNLDDNGVDNVTLVRLSAEELTEALNEVRPFRRLKGVDLKSYDFGSVFVDP 295 Query: 300 PRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359 PR+G+D T + + + ILYISCNP++L +++ L TH +ER ALFDQFPYT HME G Sbjct: 296 PRAGMDADTCELTRRFERILYISCNPETLAANIAQLHDTHRVERCALFDQFPYTHHMESG 355 Query: 360 VLLVRK 365 VLLVR+ Sbjct: 356 VLLVRR 361 >gi|289806801|ref|ZP_06537430.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 244 Score = 323 bits (827), Expect = 4e-86, Method: Compositional matrix adjust. Identities = 155/239 (64%), Positives = 184/239 (76%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L +QYE QLAEKV RL+ MM F ++FRS HYRMRAEF +WHDGD+LYHIMFD Sbjct: 6 LPTEQYEAQLAEKVARLQSMMAPFSGLVPEVFRSPVSHYRMRAEFRLWHDGDNLYHIMFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTK R+R+D F S LIN LM M+A +R LR KLFQIDYLT+ S+QA+V+L+YH Sbjct: 66 QQTKSRIRVDTFPAASQLINTLMKAMIAGVRDNHALRHKLFQIDYLTTLSNQAVVSLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + LD+ WRE A LRDAL A+ + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E Sbjct: 126 KKLDEEWREAATALRDALRAQGLNVHLIGRATKTKIELDQDYIDERLPVAGKEIIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 NSFTQPNA +N+ MLEW L TK +GDLLELYCGNGNFSL LAR+F+RVLA EIAKPS Sbjct: 186 NSFTQPNAAMNIQMLEWALEVTKDSKGDLLELYCGNGNFSLALARNFNRVLATEIAKPS 244 >gi|330873496|gb|EGH07645.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 361 Score = 323 bits (827), Expect = 4e-86, Method: Compositional matrix adjust. Identities = 165/358 (46%), Positives = 223/358 (62%), Gaps = 6/358 (1%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTK 68 Y++QL EK RLR+++ F P Q+F S HYR+RAEF +W + Y+ MF Sbjct: 9 SYDRQLEEKTVRLRELLAPFDAPKPQVFDSPREHYRLRAEFRLWREDQKRYYAMFAPGDN 68 Query: 69 ERMRIDYFMP-GSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLL 127 + +P S INALM + P L KLFQ+D+LT+ + A++T+ YHR L Sbjct: 69 RTPILLEGLPIASQRINALMPVLRERWEASPTLNHKLFQVDFLTTLAGDAMITMCYHRPL 128 Query: 128 DDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSF 187 +D W A L A++ + LIGR+ ++ + DYV E+L VAGRT YRQ E +F Sbjct: 129 NDEWLAEAEAL-----AKELDVSLIGRSRGQRLVIGHDYVTEKLDVAGRTFSYRQPEGAF 183 Query: 188 TQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA 247 TQPN +N ML W A Q DLLELYCGNGNF+L LA +VLA EI+K SV AA Sbjct: 184 TQPNGTVNGKMLNWAFDALGERQDDLLELYCGNGNFTLPLATRVRKVLATEISKTSVNAA 243 Query: 248 RYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307 N+ N V+NV +VR+S++E T+A+ R F RL+ ID+ SY F ++FVDPPR+G+D Sbjct: 244 LSNLDDNGVDNVTLVRLSAEELTEALNEVRPFRRLQGIDLKSYDFGSVFVDPPRAGMDPD 303 Query: 308 TVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 T + + + ILYISCNP++L +++ L TH +ER ALFDQFPYT HME GVLL R+ Sbjct: 304 TCELTRRFERILYISCNPETLAANIAQLHDTHRVERCALFDQFPYTHHMESGVLLARR 361 >gi|307109771|gb|EFN58008.1| hypothetical protein CHLNCDRAFT_20361 [Chlorella variabilis] Length = 461 Score = 323 bits (827), Expect = 4e-86, Method: Compositional matrix adjust. Identities = 168/370 (45%), Positives = 234/370 (63%), Gaps = 20/370 (5%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF--DQQ 66 QY+ QL K R+R + F P LQ FRS P HYRMRAEF +WH+GDDL++IM+ D + Sbjct: 47 QYDSQLEAKEQRIRNLFAEFNPPPLQAFRSRPEHYRMRAEFRVWHEGDDLFYIMYEKDGE 106 Query: 67 TKER-MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLF---------QIDYLTSQSDQ 116 K R +R+D F S L+N LM + I+ P+LR KL Q ++ T+ S Q Sbjct: 107 GKNRDVRVDSFPVASELLNELMGLLRDHIKASPILRHKLGHQPRKVSLPQANFHTTLSGQ 166 Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALH---ARKYQIQLIGRANKTKICLDRDYVDERLTV 173 ++V+LIYH+ L + W+E LR L + Q+IGR+ K+C+D D V E L+V Sbjct: 167 SMVSLIYHKKLGEEWKE---ELRGVLAKAPSSTATPQIIGRSRGQKVCVDADEVQEVLSV 223 Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKG-IQGDLLELYCGNGNFSLVLARHFD 232 G+ L Q+E SF+QPN G+ HML W +AT G G+LLELYCGNGNF++ LA +F Sbjct: 224 DGQQLKQVQVEASFSQPNGGMCQHMLSWARSATAGSTGGELLELYCGNGNFTVALAPNF- 282 Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292 R + +++K SV AA+ N N V NV + RMSS+EFT A + R+ RL+ +D+ S F Sbjct: 283 RKASSQVSKSSVAAAKRNFELNGVGNVFVARMSSEEFTAAWKEGRQMRRLEGLDLQSLSF 342 Query: 293 KTIFVDPPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPY 352 T+ VDPPR+GLD TV +++ + ++YISCNPD+L +L+ + I+R A+FDQFPY Sbjct: 343 TTLLVDPPRAGLDSQTVQLLKDFQSVVYISCNPDTLHANLAEVRDLFEIKRFAMFDQFPY 402 Query: 353 TRHMECGVLL 362 T H+ECGV L Sbjct: 403 THHVECGVYL 412 >gi|330501841|ref|YP_004378710.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas mendocina NK-01] gi|328916127|gb|AEB56958.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas mendocina NK-01] Length = 362 Score = 322 bits (826), Expect = 4e-86, Method: Compositional matrix adjust. Identities = 167/357 (46%), Positives = 227/357 (63%), Gaps = 6/357 (1%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69 Y+ QLAEK RL +++ F P ++F S HYRMRAEF +W + ++ MF K Sbjct: 11 YDAQLAEKKARLVELLAPFAAPEPEVFDSPREHYRMRAEFRLWREDGQRHYAMFAPGDKH 70 Query: 70 R-MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLD 128 + +D F SL IN LM + A + L KLFQ+++LT+ + A++TL YHR LD Sbjct: 71 TPILLDDFPIASLRINELMPRLRAAWQASEALSFKLFQVEFLTTLAGDALITLAYHRPLD 130 Query: 129 DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFT 188 +AW+ A +L A + + L+GR+ ++ + RDYV+E L+VAGRT YRQ E +FT Sbjct: 131 EAWQAEAEKL-----AAELNVNLVGRSRGQRLVIGRDYVEEALSVAGRTFRYRQPEGAFT 185 Query: 189 QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248 QPN + ML W DLLELYCGNGNF+L LA RVLA EI+K SV AA Sbjct: 186 QPNGRVCEKMLGWAHDVLGERDDDLLELYCGNGNFTLPLATRVRRVLATEISKTSVNAAL 245 Query: 249 YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDAT 308 N+A N V+NV++VR+S++E TQA+ R F RL ID+ SY F ++FVDPPR+G+D T Sbjct: 246 ANLADNGVDNVELVRLSAEELTQALNEVRPFRRLAGIDLKSYDFGSVFVDPPRAGMDPDT 305 Query: 309 VGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 + + + ILYISCNP++L +++ LS TH + R ALFDQFPYT HME GVLL R+ Sbjct: 306 CELTRRFQRILYISCNPETLAANIAQLSDTHKVTRSALFDQFPYTHHMEAGVLLERR 362 >gi|159462564|ref|XP_001689512.1| tRNA (uracil-5-)-methyltransferase [Chlamydomonas reinhardtii] gi|158283500|gb|EDP09250.1| tRNA (uracil-5-)-methyltransferase [Chlamydomonas reinhardtii] Length = 364 Score = 322 bits (826), Expect = 5e-86, Method: Compositional matrix adjust. Identities = 170/369 (46%), Positives = 234/369 (63%), Gaps = 21/369 (5%) Query: 8 DQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQT 67 + Y+ QL K+ +L+Q+ F P L++F S P HYRMR+EF + L+ + Sbjct: 6 EDYDGQLDRKLTKLKQLFQEFDPPQLEVFTSPPTHYRMRSEFTVEQRDGPLHFKGGKPKG 65 Query: 68 KERMRIDYFMPGSLLINALMIEMMATIRLE----PLLRAKLFQIDYLTSQSDQAIVTLIY 123 R+R+D F + +N E+MA +R E P LR +LFQ+++ T+ + A+VTL+Y Sbjct: 66 PRRVRVDTFPVATKQVN----ELMAVVREEADKTPELRQRLFQVNFHTTLAGDAMVTLLY 121 Query: 124 HRLLDDAWRECAIRLRDALHARKY------QIQLIGRANKTKICLDRDYVDERLTVAGRT 177 HR L W+ A RLRDAL A + +IGR+ K KI LD D+V ERLTV GRT Sbjct: 122 HRKLGPEWQAAAERLRDALAATPTAAAAGVRPHVIGRSRKQKIALDADFVLERLTVGGRT 181 Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAV 237 + +Q+E SF+QPN + HML W DLLELYCGNGNF++ L+ +F RV+A Sbjct: 182 FVQKQVEGSFSQPNGHVCQHMLTWAQ------DDDLLELYCGNGNFTIPLSANFRRVVAT 235 Query: 238 EIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDID-IHSYRFKTIF 296 E+AK SVEAARYN+ AN V+NV + RM+S+EF MR RL+ ++ + R +TI Sbjct: 236 EVAKSSVEAARYNMEANGVSNVFLARMASEEFAVTMRERGSRRRLEGLEGWEALRLRTIL 295 Query: 297 VDPPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHM 356 VDPPR+GLDD TV +++ + I+YISCNPD+LC +L ++ TH I R A FDQFPYT H+ Sbjct: 296 VDPPRAGLDDFTVELLKEFDRIVYISCNPDTLCANLKAIAPTHRIARFAAFDQFPYTHHL 355 Query: 357 ECGVLLVRK 365 ECGV LVR+ Sbjct: 356 ECGVYLVRR 364 >gi|213028321|ref|ZP_03342768.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 205 Score = 322 bits (825), Expect = 7e-86, Method: Compositional matrix adjust. Identities = 145/204 (71%), Positives = 173/204 (84%) Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNG 221 LD+DY+DERL VAG+ +IYRQ+ENSFTQPNA +N+ MLEW L TK +GDLLELYCGNG Sbjct: 2 LDQDYIDERLPVAGKEIIYRQVENSFTQPNAAMNIQMLEWALEVTKDSKGDLLELYCGNG 61 Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281 NFSL LAR+F+RVLA EIAKPSV AA+YNIAANH++NV+I+RM+++EFTQAM REFNR Sbjct: 62 NFSLALARNFNRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNR 121 Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTI 341 L+ ID+ Y+ +TIFVDPPRSGLD T MVQAYP ILYISCNP++LC++L LS THT+ Sbjct: 122 LQGIDLKRYQCETIFVDPPRSGLDSETEKMVQAYPRILYISCNPETLCKNLETLSQTHTV 181 Query: 342 ERLALFDQFPYTRHMECGVLLVRK 365 RLALFDQFPYT HMECGVLL + Sbjct: 182 SRLALFDQFPYTHHMECGVLLTAR 205 >gi|330967678|gb|EGH67938.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas syringae pv. actinidiae str. M302091] Length = 359 Score = 321 bits (822), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 165/355 (46%), Positives = 222/355 (62%), Gaps = 6/355 (1%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69 Y++QL +K RLR+++ F P Q+F S HYR+RAEF +W + Y+ MF Sbjct: 10 YDRQLEKKTVRLRELLAPFDAPEPQVFDSPREHYRLRAEFRLWREDQKRYYAMFAPGDNR 69 Query: 70 RMRIDYFMP-GSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLD 128 + +P S INALM + P L KLFQ+D+LT+ + A++T+ YHR LD Sbjct: 70 TPILLEGLPIASQRINALMQVLRERWEASPTLNHKLFQVDFLTTLAGDAMITMCYHRPLD 129 Query: 129 DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFT 188 D W A L A++ + LIGR+ ++ + DYV E+L VAGRT YRQ E +FT Sbjct: 130 DEWLAEAEAL-----AKELDVSLIGRSRGQRLVIGHDYVTEKLDVAGRTFSYRQPEGAFT 184 Query: 189 QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248 QPN +N ML W A Q DLLELYCGNGNF+L LA +VLA EI+K SV AA Sbjct: 185 QPNGTVNGKMLNWAFDALGERQDDLLELYCGNGNFTLPLATRVRKVLATEISKTSVNAAL 244 Query: 249 YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDAT 308 N+ N V+NV +VR+S++E T+A+ R F RL+ ID+ SY F ++FVDPPR+G+D T Sbjct: 245 SNLDDNGVDNVTLVRLSAEELTEALNEVRPFRRLQGIDLKSYDFGSVFVDPPRAGMDPDT 304 Query: 309 VGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363 + + + ILYISCNP++L +++ L TH +ER ALFDQFPYT HME GVLLV Sbjct: 305 CELTRRFERILYISCNPETLAANIAQLHDTHRVERCALFDQFPYTHHMESGVLLV 359 >gi|77461119|ref|YP_350626.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas fluorescens Pf0-1] gi|123603199|sp|Q3K6G9|TRMA_PSEPF RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|77385122|gb|ABA76635.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas fluorescens Pf0-1] Length = 359 Score = 320 bits (819), Expect = 3e-85, Method: Compositional matrix adjust. Identities = 163/357 (45%), Positives = 223/357 (62%), Gaps = 6/357 (1%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69 Y QL +KV RLR ++ F P +F S ++R+RAEF +W +G + ++ MF Q K Sbjct: 8 YAAQLEDKVTRLRDLLAPFDAPEPTVFDSPLQNFRLRAEFRLWREGGERHYAMFSQDDKR 67 Query: 70 R-MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLD 128 + I+ F SL IN LM ++ A + L KLFQ+++LT+ + A++TL YHR LD Sbjct: 68 TPILIEEFPIASLRINQLMPQLKAAWQASAALSHKLFQVEFLTTLAGDAMITLCYHRPLD 127 Query: 129 DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFT 188 + W A +L A + +IGR+ + L DYV E+L V GRT YRQ E +FT Sbjct: 128 EHWHAAATKL-----ATDLGVSIIGRSKGKREVLGLDYVVEKLDVGGRTFSYRQPEGAFT 182 Query: 189 QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248 QPN +N ML W A DLLELYCGNGNF+L LA +VLA EI+K SV AA Sbjct: 183 QPNGTVNQKMLNWAYEALGDRSDDLLELYCGNGNFTLPLATRVRKVLATEISKTSVNAAL 242 Query: 249 YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDAT 308 N+A N V+NV +VR+S++E T+A+ R F RL ID+ SY F ++FVDPPR+G+D T Sbjct: 243 SNLAENAVDNVTLVRLSAEELTEALNEVRPFRRLHGIDLKSYEFGSVFVDPPRAGMDPDT 302 Query: 309 VGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 + + + +ILYISCNP++L +++ L TH I R ALFDQFP+T HME GVLL R+ Sbjct: 303 CELTRRFDNILYISCNPETLAANIAQLHDTHRITRCALFDQFPWTHHMESGVLLTRR 359 >gi|20178175|sp|Q9RHS9|TRMA_PSEFL RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|6624218|dbj|BAA88495.1| (uracil-5-)methyltransferase [Pseudomonas fluorescens] Length = 363 Score = 319 bits (817), Expect = 5e-85, Method: Compositional matrix adjust. Identities = 161/357 (45%), Positives = 224/357 (62%), Gaps = 6/357 (1%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69 Y QL +KV RLR ++ F P Q+F S ++R+RAEF +W +G + ++ MF Q K Sbjct: 12 YTAQLQDKVTRLRDLLAPFDAPEPQVFDSPLQNFRLRAEFRLWREGGERHYAMFSQDDKR 71 Query: 70 R-MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLD 128 + I+ F SL IN LM ++ A + L KLFQ+++LT+ + A++TL YHR LD Sbjct: 72 TPILIEEFPIASLRINQLMPQLKAAWQASAALSHKLFQVEFLTTLAGDAMITLCYHRPLD 131 Query: 129 DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFT 188 + W A +L A + +IGR+ + + RDYV E+L V GRT YRQ E +FT Sbjct: 132 EHWHTAANKL-----AADLNVSIIGRSKGKRDVIGRDYVVEKLDVGGRTFSYRQPEGAFT 186 Query: 189 QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248 QPN +N ML W A DLLELYCGNGNF+L LA +VLA EI+K SV AA Sbjct: 187 QPNGTVNQKMLNWAFEALGDRSDDLLELYCGNGNFTLPLATRVRKVLATEISKTSVNAAL 246 Query: 249 YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDAT 308 N+ N V+NV +VR+S++E T+A+ R F RL ID+ SY F ++FVDPPR+G+D T Sbjct: 247 SNLDENAVDNVTLVRLSAEELTEALNEVRPFRRLHGIDLKSYEFGSVFVDPPRAGMDPDT 306 Query: 309 VGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 + + + +ILYISCNP++L +++ L TH I + A+FDQFP+T HME GVLL R+ Sbjct: 307 CELTRRFENILYISCNPETLAANIAQLHDTHRITQCAMFDQFPWTHHMESGVLLTRR 363 >gi|289675862|ref|ZP_06496752.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas syringae pv. syringae FF5] Length = 361 Score = 319 bits (817), Expect = 5e-85, Method: Compositional matrix adjust. Identities = 165/358 (46%), Positives = 223/358 (62%), Gaps = 6/358 (1%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF-DQQT 67 Y++QL EK RLR+++ F P Q+F S HYR+RAEF +W + Y+ MF + Sbjct: 9 SYDRQLEEKTVRLRELLAPFDAPEPQVFDSPREHYRLRAEFRLWREDQKRYYAMFAPGEN 68 Query: 68 KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLL 127 + + ++ S INALM + P L KLFQ+D+LT+ + A++TL YHR L Sbjct: 69 RTPILLEGLPIASERINALMPVLRERWEASPTLNHKLFQVDFLTTLAGDAMITLCYHRPL 128 Query: 128 DDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSF 187 D W+ A A + + LIGR+ K+ + DYV E+L VAGRT YRQ E +F Sbjct: 129 DAEWQAAA-----EQLAAELDVSLIGRSKGQKLVIGHDYVTEKLDVAGRTFSYRQPEGAF 183 Query: 188 TQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA 247 TQPN +N ML W A Q DLLELYCGNGNF+L LA +VLA EI+K SV AA Sbjct: 184 TQPNGTVNGKMLNWAFDALGERQDDLLELYCGNGNFTLPLATRVRKVLATEISKTSVNAA 243 Query: 248 RYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307 N+ N V+NV +VR+S++E T+A+ R F RL +D+ SY F ++FVDPPR+G+D Sbjct: 244 LSNLDDNGVDNVTLVRLSAEELTEALNEVRPFRRLHGVDLKSYDFGSVFVDPPRAGMDPD 303 Query: 308 TVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 T + + + ILYISCNP++L +++ L TH +ER ALFDQFPYT HME GVLLVR+ Sbjct: 304 TCELTRRFERILYISCNPETLAANIAQLHDTHRVERCALFDQFPYTHHMESGVLLVRR 361 >gi|126641572|ref|YP_001084556.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter baumannii ATCC 17978] Length = 322 Score = 319 bits (817), Expect = 5e-85, Method: Compositional matrix adjust. Identities = 155/326 (47%), Positives = 220/326 (67%), Gaps = 11/326 (3%) Query: 45 MRAEFHIWHDGDDLYHIMF----DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLL 100 MRAEF IWH +D+++ MF D + K +RID F IN LM ++A ++ LL Sbjct: 1 MRAEFRIWHTENDMFYAMFERNDDGKQKTVVRIDEFPIADKSINDLMPLLLAELKANSLL 60 Query: 101 RAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKI 160 +LF++D+L + S + +VTLIYHR L+ W + A L A K I+++GR+ KI Sbjct: 61 SQRLFEVDFLATLSGEMLVTLIYHRKLNQEWEQAAKAL-----AEKLNIKIMGRSRGQKI 115 Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGN 220 + D+V E + R+ Y+QIE+SFTQPNA + ML+W A +G + LLELYCGN Sbjct: 116 VIGDDFVVEEFELLNRSFKYKQIESSFTQPNAQVCKKMLQWACDAAEGSKKHLLELYCGN 175 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 GNF+L L+ F+RVLA E+AK SV AA++NI N ++N+++ R+S++EFTQA + EREF Sbjct: 176 GNFTLPLSLKFERVLATELAKSSVYAAQWNIEQNQIDNIQVARLSAEEFTQAYQGEREFR 235 Query: 281 RLKD--IDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTT 338 RL++ IDI SY F T+FVDPPR+G+DD T+ ++Q + I+YISCNPD+L +L L+ T Sbjct: 236 RLQEAYIDIQSYDFGTVFVDPPRAGIDDETLKLLQGFERIIYISCNPDTLYENLKTLTQT 295 Query: 339 HTIERLALFDQFPYTRHMECGVLLVR 364 H + + ALFDQFPYT H+E GVLL + Sbjct: 296 HRVTKFALFDQFPYTHHVESGVLLEK 321 >gi|254457842|ref|ZP_05071269.1| tRNA (uracil-5-)-methyltransferase [Campylobacterales bacterium GD 1] gi|207085235|gb|EDZ62520.1| tRNA (uracil-5-)-methyltransferase [Campylobacterales bacterium GD 1] Length = 368 Score = 318 bits (816), Expect = 6e-85, Method: Compositional matrix adjust. Identities = 155/358 (43%), Positives = 233/358 (65%), Gaps = 6/358 (1%) Query: 8 DQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQT 67 + YE QL++K++ R F N+ +F+S HYR R+EF IWH D++++ M + Sbjct: 17 NGYEGQLSDKLELNRDRFTPFYTKNISVFKSPDSHYRSRSEFKIWHIEDEIHYGMNHLEH 76 Query: 68 KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLL 127 K + +D + I+ LM +++ +I+ + + KLF D+L+S + +V+LIYHR L Sbjct: 77 KGVVLVDDCPQVNAFIHTLMPKLLVSIKDKGIC-FKLFGADFLSSSRGEMVVSLIYHRKL 135 Query: 128 DDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSF 187 D W++ A + A++ I +IGR+ K K+ + +DY+ E L + + ++ IENSF Sbjct: 136 DQEWQDKATEI-----AKELGIYIIGRSRKQKLVIGQDYITESLNIDEKIYRFKYIENSF 190 Query: 188 TQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA 247 TQPN+ +N M+ W L + GDLLELYCG GNF++ A+ F++VLA EI+KPS+ AA Sbjct: 191 TQPNSKVNEQMISWALKSLSDCGGDLLELYCGAGNFTIPFAKKFNKVLATEISKPSINAA 250 Query: 248 RYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307 + N+ N V N++ VRMS +EF QA+ E+EF R+ +IDI +Y TIFVDPPRSG+DDA Sbjct: 251 KENMLLNDVENIEFVRMSVEEFVQALDGEKEFRRMNEIDIDAYNINTIFVDPPRSGMDDA 310 Query: 308 TVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 + + +ILYISCNP++L RDL ILS TH + +ALFDQFPYT H+E GV L+++ Sbjct: 311 SCRFASRHDNILYISCNPETLVRDLKILSETHDVVDMALFDQFPYTHHVEMGVKLIKR 368 >gi|330952946|gb|EGH53206.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas syringae Cit 7] Length = 361 Score = 318 bits (816), Expect = 7e-85, Method: Compositional matrix adjust. Identities = 166/358 (46%), Positives = 221/358 (61%), Gaps = 6/358 (1%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTK 68 Y++QL EK RLR+++ F P Q+F S HYR+RAEF +W + Y+ MF Sbjct: 9 SYDRQLEEKTVRLRELLAPFDAPEPQVFDSPREHYRLRAEFRLWREDQKRYYAMFAPGDN 68 Query: 69 ERMRIDYFMP-GSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLL 127 + +P S INALM + P L KLFQ+D+LT+ + A++TL YHR L Sbjct: 69 RTPILLEGLPIASERINALMPVLRERWEASPTLNHKLFQVDFLTTLAGDAMITLCYHRPL 128 Query: 128 DDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSF 187 D W+ A A + + LIGR+ K+ + DYV E+L VAGRT YRQ E +F Sbjct: 129 DAEWQAAA-----EQLAAELDVSLIGRSKGQKLVIGHDYVTEKLDVAGRTFSYRQPEGAF 183 Query: 188 TQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA 247 TQPN +N ML W A Q DLLELYCGNGNF+L LA +VLA EI+K SV AA Sbjct: 184 TQPNGTVNGKMLNWAFDALGERQDDLLELYCGNGNFTLPLATRVRKVLATEISKTSVNAA 243 Query: 248 RYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307 N+ N V+NV +VR+S++E T+A+ R F RL +D+ SY F ++FVDPPR+G+D Sbjct: 244 LSNLDDNGVDNVTLVRLSAEELTEALNEVRPFRRLHGVDLKSYDFGSVFVDPPRAGMDPE 303 Query: 308 TVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 T + + + ILYISCNP++L +++ L TH +ER ALFDQFPYT HME GVLLVR+ Sbjct: 304 TCELTRRFERILYISCNPETLAANIAQLHDTHRVERCALFDQFPYTHHMESGVLLVRR 361 >gi|330969518|gb|EGH69584.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas syringae pv. aceris str. M302273PT] Length = 361 Score = 318 bits (815), Expect = 9e-85, Method: Compositional matrix adjust. Identities = 166/358 (46%), Positives = 221/358 (61%), Gaps = 6/358 (1%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTK 68 Y++QL EK RLR+++ F P Q+F S HYR+RAEF +W + Y+ MF Sbjct: 9 SYDRQLEEKTVRLRELLAPFDAPEPQVFDSPREHYRLRAEFRLWREDQKRYYAMFAPGDN 68 Query: 69 ERMRIDYFMP-GSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLL 127 + +P S INALM + P L KLFQ+D+LT+ + A++TL YHR L Sbjct: 69 RTPILLEGLPIASERINALMPVLRERWEASPTLNHKLFQVDFLTTLAGDAMITLCYHRPL 128 Query: 128 DDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSF 187 D W+ A A + + LIGR+ K+ + DYV E+L VAGRT YRQ E +F Sbjct: 129 DAEWQAAA-----EQLAAELDVSLIGRSKGQKLVIGHDYVTEKLDVAGRTFSYRQPEGAF 183 Query: 188 TQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA 247 TQPN +N ML W A Q DLLELYCGNGNF+L LA +VLA EI+K SV AA Sbjct: 184 TQPNGTVNGKMLNWAFDALGERQDDLLELYCGNGNFTLPLATRVRKVLATEISKTSVNAA 243 Query: 248 RYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307 N+ N V+NV +VR+S++E T+A+ R F RL +D+ SY F ++FVDPPR+G+D Sbjct: 244 LSNLDDNGVDNVTLVRLSAEELTEALNEVRPFRRLHGVDLKSYDFGSVFVDPPRAGMDPD 303 Query: 308 TVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 T + + + ILYISCNP++L +++ L TH +ER ALFDQFPYT HME GVLLVR+ Sbjct: 304 TCELTRRFERILYISCNPETLAANIAQLHDTHRVERCALFDQFPYTHHMESGVLLVRR 361 >gi|71734845|ref|YP_276461.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas syringae pv. phaseolicola 1448A] gi|257482160|ref|ZP_05636201.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289625706|ref|ZP_06458660.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289647718|ref|ZP_06479061.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas syringae pv. aesculi str. 2250] gi|123635080|sp|Q48DT0|TRMA_PSE14 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|71555398|gb|AAZ34609.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas syringae pv. phaseolicola 1448A] gi|115265670|dbj|BAF32931.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas syringae pv. phaseolicola] gi|320322638|gb|EFW78731.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas syringae pv. glycinea str. B076] gi|320330577|gb|EFW86556.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas syringae pv. glycinea str. race 4] gi|330868981|gb|EGH03690.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330987567|gb|EGH85670.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas syringae pv. lachrymans str. M301315] gi|331011373|gb|EGH91429.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 361 Score = 318 bits (814), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 165/358 (46%), Positives = 222/358 (62%), Gaps = 6/358 (1%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTK 68 Y++QL EK RLR+++ F P Q+F S HYR+RAEF +W + Y+ MF Sbjct: 9 SYDRQLEEKTVRLRELLAPFDAPEPQVFDSPREHYRLRAEFRLWREDQKRYYAMFAPGDN 68 Query: 69 ERMRIDYFMP-GSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLL 127 + +P S INALM + P L KLFQ+D+LT+ + A++T+ YHR L Sbjct: 69 RTPILLEGLPIASERINALMPVLRERWEASPTLNHKLFQVDFLTTLAGDAMITMCYHRPL 128 Query: 128 DDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSF 187 D W+ A A + + LIGR+ K+ + +DYV E+L VAGRT YRQ E +F Sbjct: 129 DAEWQAAA-----EQLAAELNVSLIGRSKGQKLIIGQDYVTEKLDVAGRTFSYRQPEGAF 183 Query: 188 TQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA 247 TQPN +N ML W A Q DLLELYCGNGNF+L LA +VLA EI+K SV AA Sbjct: 184 TQPNGTVNGKMLNWAFDALGERQDDLLELYCGNGNFTLPLATRVRKVLATEISKTSVNAA 243 Query: 248 RYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307 N+ N V+NV +VR+S++E T+A+ R F RL +D+ SY F ++FVDPPR+G+D Sbjct: 244 LSNLDDNGVDNVTLVRLSAEELTEALNEVRPFRRLHGVDLKSYDFGSVFVDPPRAGMDPD 303 Query: 308 TVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 T + + + ILYISCNP++L +++ L TH +ER ALFDQFPYT HME GVLLVR+ Sbjct: 304 TCELTRRFERILYISCNPETLAANIAQLHDTHRVERCALFDQFPYTHHMESGVLLVRR 361 >gi|330888777|gb|EGH21438.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas syringae pv. mori str. 301020] Length = 361 Score = 317 bits (813), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 165/358 (46%), Positives = 222/358 (62%), Gaps = 6/358 (1%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTK 68 Y++QL EK RLR+++ F P Q+F S HYR+RAEF +W + Y+ MF Sbjct: 9 SYDRQLEEKTVRLRELLAPFDAPEPQVFDSPREHYRLRAEFRLWREDQKRYYAMFAPGDN 68 Query: 69 ERMRIDYFMP-GSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLL 127 + +P S INALM + P L KLFQ+D+LT+ + A++T+ YHR L Sbjct: 69 RTPILLEGLPIASERINALMPVLRERWEASPTLNHKLFQVDFLTTLAGDAMITMCYHRPL 128 Query: 128 DDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSF 187 D W+ A A + + LIGR+ K+ + +DYV E+L VAGRT YRQ E +F Sbjct: 129 DAEWQAAA-----EQLAAELNVSLIGRSKGQKLIIGQDYVTEKLDVAGRTFSYRQPEGAF 183 Query: 188 TQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA 247 TQPN +N ML W A Q DLLELYCGNGNF+L LA +VLA EI+K SV AA Sbjct: 184 TQPNGTVNGKMLNWAFDALGERQDDLLELYCGNGNFTLPLATRVRKVLATEISKTSVNAA 243 Query: 248 RYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307 N+ N V+NV +VR+S++E T+A+ R F RL +D+ SY F ++FVDPPR+G+D Sbjct: 244 LNNLDDNGVDNVTLVRLSAEELTEALNEVRPFRRLHGVDLKSYDFGSVFVDPPRAGMDPD 303 Query: 308 TVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 T + + + ILYISCNP++L +++ L TH +ER ALFDQFPYT HME GVLLVR+ Sbjct: 304 TCELTRRFERILYISCNPETLAANIAQLHDTHRVERCALFDQFPYTHHMESGVLLVRR 361 >gi|70732678|ref|YP_262441.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas fluorescens Pf-5] gi|123652774|sp|Q4K5P2|TRMA_PSEF5 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|68346977|gb|AAY94583.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas fluorescens Pf-5] Length = 359 Score = 317 bits (813), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 160/357 (44%), Positives = 226/357 (63%), Gaps = 6/357 (1%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69 Y QL +KV RLR ++ F P Q+F S ++R+RAEF +W + + ++ MF Q K Sbjct: 8 YTTQLNDKVARLRDLLAPFDAPEPQVFDSPLQNFRLRAEFRLWREAGERHYAMFSQDDKR 67 Query: 70 R-MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLD 128 + I+ F S IN LM + A + L KLFQ+++LT+ + A++TL YHR LD Sbjct: 68 TPILIEEFPIASQRINQLMPRLKAAWQASAPLSHKLFQVEFLTTLAGDAMITLCYHRPLD 127 Query: 129 DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFT 188 + W + A +L A ++ +IGR+ + + +DYV E+L V GRT YRQ E +FT Sbjct: 128 EHWHKAASQL-----AADLKVSVIGRSKGKREVIGQDYVVEKLEVGGRTFSYRQPEGAFT 182 Query: 189 QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248 QPN +N ML W A Q DLLELYCGNGNF+L LA +VLA EI+K SV AA Sbjct: 183 QPNGTVNQKMLNWAYEALGERQDDLLELYCGNGNFTLPLATRVRKVLATEISKTSVNAAL 242 Query: 249 YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDAT 308 N++ N V+NV +VR+S++E T+A+ R F RL+ +D+ SY F ++FVDPPR+G+D T Sbjct: 243 SNLSENAVDNVTLVRLSAEELTEALNEVRPFRRLQGVDLKSYEFGSVFVDPPRAGMDPDT 302 Query: 309 VGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 + + + +ILYISCNP++L +++ L TH I R ALFDQFP+T HME GVLL R+ Sbjct: 303 CELTRRFDNILYISCNPETLAANIAQLHDTHRITRCALFDQFPWTHHMESGVLLTRR 359 >gi|302189046|ref|ZP_07265719.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas syringae pv. syringae 642] Length = 361 Score = 317 bits (812), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 165/358 (46%), Positives = 221/358 (61%), Gaps = 6/358 (1%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTK 68 Y++QL EK RLR+++ F P Q+F S HYR+RAEF +W + Y+ MF Sbjct: 9 SYDRQLEEKTVRLRELLAPFDAPEPQVFDSPREHYRLRAEFRLWREDQKRYYAMFAPGDN 68 Query: 69 ERMRIDYFMP-GSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLL 127 + +P S INALM + P L KLFQ+D+LT+ + A++T+ YHR L Sbjct: 69 RTPILLEGLPIASERINALMPVLRERWEASPTLNHKLFQVDFLTTLAGDAMITMCYHRPL 128 Query: 128 DDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSF 187 D W+ A A + + LIGR+ K+ + DYV E+L VAGRT YRQ E +F Sbjct: 129 DAEWQAAA-----EQLAAELDVSLIGRSKGQKLVIGHDYVTEKLDVAGRTFSYRQPEGAF 183 Query: 188 TQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA 247 TQPN +N ML W A Q DLLELYCGNGNF+L LA +VLA EI+K SV AA Sbjct: 184 TQPNGTVNGKMLNWAFDALGERQDDLLELYCGNGNFTLPLATRVRKVLATEISKTSVNAA 243 Query: 248 RYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307 N+ N V+NV +VR+S++E T+A+ R F RL +D+ SY F ++FVDPPR+G+D Sbjct: 244 LSNLDDNGVDNVTLVRLSAEELTEALNEVRPFRRLHGVDLKSYDFGSVFVDPPRAGMDPD 303 Query: 308 TVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 T + + + ILYISCNP++L +++ L TH +ER ALFDQFPYT HME GVLLVR+ Sbjct: 304 TCELTRRFERILYISCNPETLAANIAQLHDTHRVERCALFDQFPYTHHMESGVLLVRR 361 >gi|330811870|ref|YP_004356332.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327379978|gb|AEA71328.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 359 Score = 316 bits (810), Expect = 3e-84, Method: Compositional matrix adjust. Identities = 161/357 (45%), Positives = 222/357 (62%), Gaps = 6/357 (1%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69 Y QL KV RLR ++ F P +F S ++R+RAEF +W + + ++ MF Q K Sbjct: 8 YTAQLQGKVTRLRDLLAPFDAPEPAVFDSPLKNFRLRAEFRLWREAGERHYAMFSQDDKR 67 Query: 70 R-MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLD 128 + I+ F SL IN LM ++ A + L KLFQ+++LT+ + A++TL YHR LD Sbjct: 68 TPILIEEFPIASLRINQLMPQLKAAWQASAPLSHKLFQVEFLTTLAGDAMITLCYHRPLD 127 Query: 129 DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFT 188 + W A +L A + +IGR+ + + DYV E+L V GRT YRQ E +FT Sbjct: 128 EHWHAAASKL-----ATDLGVSIIGRSKGKREVIGHDYVVEKLEVGGRTFSYRQPEGAFT 182 Query: 189 QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248 QPN +N ML W A DLLELYCGNGNF+L LA +VLA EI+K SV AA Sbjct: 183 QPNGTVNQKMLNWAYDALGDRSDDLLELYCGNGNFTLPLATRVRKVLATEISKTSVNAAL 242 Query: 249 YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDAT 308 N++ N V+NV +VR+S++E T+A+ R F RL ID+ SY F ++FVDPPR+G+D T Sbjct: 243 SNLSENAVDNVTLVRLSAEELTEALNEVRPFRRLHGIDLKSYEFGSVFVDPPRAGMDPDT 302 Query: 309 VGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 + + + +ILYISCNPD+L +++ L+ TH I R ALFDQFP+T HME GVLL R+ Sbjct: 303 CELTRRFDNILYISCNPDTLAANIAQLNDTHRITRCALFDQFPWTHHMESGVLLTRR 359 >gi|329895439|ref|ZP_08271020.1| tRNA (Uracil54-C5-)-methyltransferase [gamma proteobacterium IMCC3088] gi|328922322|gb|EGG29668.1| tRNA (Uracil54-C5-)-methyltransferase [gamma proteobacterium IMCC3088] Length = 365 Score = 315 bits (808), Expect = 5e-84, Method: Compositional matrix adjust. Identities = 164/361 (45%), Positives = 222/361 (61%), Gaps = 8/361 (2%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQT- 67 +Y+ L EK R ++ F + S +RMRAEF IWHDGDDL++ MFD+ Sbjct: 10 RYQALLNEKTRRCTELFAPFTDLQPSVHDSPQDAFRMRAEFRIWHDGDDLFYAMFDKDNP 69 Query: 68 KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLL 127 KE +RID + GS I LM + I +P+LR +LFQI++LTS + +A+VTLIYH+ L Sbjct: 70 KEPLRIDSYPFGSPTIQRLMPALRTAIIDKPVLRERLFQIEFLTSTTKEALVTLIYHKAL 129 Query: 128 DDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSF 187 D W A L L R +IGR+ K K+ L+ + E L + YR E F Sbjct: 130 SDDWEASARALAKTLDCR-----IIGRSRKQKVVLNGSSISETLNINHSNYHYRYYEQGF 184 Query: 188 TQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA 247 TQPNA IN+ M+EWV DL+ELYCG GNF++ L++ F RVLA E+AK SV AA Sbjct: 185 TQPNAAINIKMIEWVSQHFGDTSRDLIELYCGLGNFTVPLSQKFRRVLATEVAKSSVHAA 244 Query: 248 RYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDID--IHSYRFKTIFVDPPRSGLD 305 NIA N++ N+ I R+++ E QA+R ER F RL + + Y F I VDPPR+GLD Sbjct: 245 HENIALNNIENIAIARLNAAETAQALRGERAFKRLAALPHALGEYDFAAILVDPPRAGLD 304 Query: 306 DATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 + ++ + Q+ I YISCNP++L RDL L+ THTI+ A+FDQFPYT H ECGV+L ++ Sbjct: 305 EDSLRLAQSIDSIAYISCNPETLARDLEPLTQTHTIDAWAVFDQFPYTHHTECGVILSKR 364 Query: 366 P 366 P Sbjct: 365 P 365 >gi|254514426|ref|ZP_05126487.1| tRNA (uracil-5-)-methyltransferase [gamma proteobacterium NOR5-3] gi|219676669|gb|EED33034.1| tRNA (uracil-5-)-methyltransferase [gamma proteobacterium NOR5-3] Length = 366 Score = 315 bits (806), Expect = 9e-84, Method: Compositional matrix adjust. Identities = 159/361 (44%), Positives = 224/361 (62%), Gaps = 8/361 (2%) Query: 8 DQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQT 67 + YEQ A+K R+ + M +P Q F S YR+RAEF IWHD DDL ++MFD ++ Sbjct: 11 ENYEQLFAQKCARVEKDMQFGSLPPAQRFSSPSQSYRVRAEFRIWHDEDDLNYVMFDPES 70 Query: 68 -KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL 126 + + I F+P I LM + ++L P LR KLFQ +++ + + + +VTLIYHR Sbjct: 71 PRTPVIIREFVPALEPIRQLMPRLREYLKLRPTLRRKLFQAEFMATTTGELLVTLIYHRA 130 Query: 127 LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS 186 LDDAW E A L +A + + L+GR+ K K + D+V + V GR YRQ E S Sbjct: 131 LDDAWEEEATTLAEA-----FGVSLVGRSRKQKRVIGHDFVTDEFVVNGRIYSYRQYEQS 185 Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246 F QPNA +N ML W + GDLLELYCGNGNF+L LA F +V+A E++K A Sbjct: 186 FVQPNAPVNQKMLNWAWEQSAHCGGDLLELYCGNGNFTLPLASQFPQVIATELSKSGTRA 245 Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDID--IHSYRFKTIFVDPPRSGL 304 A N++ANH+ NV++VR+S++E +QAM REF RL + + Y +T+FVDPPR+GL Sbjct: 246 ALENLSANHIENVEVVRLSAEEVSQAMAGVREFRRLASLPKALGDYDLRTVFVDPPRAGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D AT+ V+ + I+Y+SCN +L ++ L +TH++ ALFDQFPYT H+E V+L R Sbjct: 306 DPATLDCVRQFEAIIYVSCNLQTLKANIHALESTHSVASFALFDQFPYTHHIESAVVLRR 365 Query: 365 K 365 Sbjct: 366 S 366 >gi|313109698|ref|ZP_07795639.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas aeruginosa 39016] gi|310882141|gb|EFQ40735.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas aeruginosa 39016] Length = 363 Score = 314 bits (805), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 169/359 (47%), Positives = 229/359 (63%), Gaps = 9/359 (2%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHD--GDDLYHIMFDQQT 67 Y QL +K RL ++ F P ++F S HYR+RAEF +W + + Y+ MF+Q Sbjct: 11 YAAQLEDKKSRLAGLLAPFAAPAPEVFESPREHYRLRAEFRLWRETGNEKRYYAMFEQGD 70 Query: 68 KER-MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL 126 K + I+ F S IN LM + A +P L KLFQ+++LT+ + A++TL YHR Sbjct: 71 KHTPILIEDFPIASRRINELMPRLKAAW-ADPALGFKLFQVEFLTTLAGDALITLCYHRP 129 Query: 127 LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS 186 +DDAWR+ A +L A + + L+GR+ +I + RDYV+E L+VAGR YRQ E + Sbjct: 130 IDDAWRQAAEKL-----AAELGVNLVGRSRGKRIVVGRDYVEEELSVAGRRFRYRQPEGA 184 Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246 FTQPN +N ML W A DLLELYCGNGNF+L LA +VLA EI+K SV A Sbjct: 185 FTQPNGEVNQKMLGWAYEALGQRDDDLLELYCGNGNFTLPLATRVRKVLATEISKSSVNA 244 Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306 A N+A N V+NV +VR+S++E TQA+ R F RL DID+ SY F ++FVDPPR+G+D Sbjct: 245 ALANLADNAVDNVSLVRLSAEELTQALNEVRPFRRLADIDLKSYAFGSVFVDPPRAGMDP 304 Query: 307 ATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 T + + + ILYISCNP++L ++++ L TH I R ALFDQFPYT HME GVLL R+ Sbjct: 305 DTCELTRRFERILYISCNPETLAQNIAQLHDTHRISRCALFDQFPYTHHMESGVLLERR 363 >gi|291333829|gb|ADD93512.1| tRNA uracil 5 methyltransferase [uncultured marine bacterium MedDCM-OCT-S04-C13] Length = 365 Score = 314 bits (805), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 165/361 (45%), Positives = 226/361 (62%), Gaps = 8/361 (2%) Query: 7 IDQYEQQLAEKVDRLRQMML--AFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 +DQY+ QL +K+ Q+M + + ++ S +RMRAEF +WH+ + + M Sbjct: 8 LDQYQSQLDKKLVNFYQIMAEAGVSIDSATVYPSPSSGFRMRAEFRLWHEHGRVNYAMNR 67 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 K I F G+ LIN LM ++A + L K F ++LT+ S +A++TLIYH Sbjct: 68 PGEKRPYIIQDFPIGAPLINQLMPPLLAALNGNETLSRKCFSAEFLTTSSGEALITLIYH 127 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 R LD+ W A L+ L+ +IGR+ K K+ LD+DYV E L V R Y+Q+E Sbjct: 128 RPLDEQWEVEARALQSELNT-----AIIGRSRKQKLVLDQDYVTEVLQVGDRQYSYQQVE 182 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 + FTQPNA IN ML W G DLLELYCGNGNF+ LARHF+ VLA EI+K S Sbjct: 183 SGFTQPNATINSQMLNWASNCLAGSNKRDLLELYCGNGNFTAPLARHFNAVLATEISKVS 242 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 V +A N AAN ++N+++VR+S++E TQA+ ++R F RL IDI SY F T+FVDPPR+G Sbjct: 243 VNSALTNFAANQIDNIEVVRLSAEELTQALNKQRPFRRLAHIDIDSYDFSTVFVDPPRAG 302 Query: 304 LDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363 LD T +V + ILYISCNP++L ++L +S TH IE A+FDQFP+T H+E GVLL Sbjct: 303 LDADTEKLVCRFDRILYISCNPNTLAQNLVQISKTHRIEAAAVFDQFPWTAHLESGVLLS 362 Query: 364 R 364 R Sbjct: 363 R 363 >gi|66047514|ref|YP_237355.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas syringae pv. syringae B728a] gi|75500625|sp|Q4ZNF5|TRMA_PSEU2 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|63258221|gb|AAY39317.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas syringae pv. syringae B728a] Length = 361 Score = 313 bits (802), Expect = 3e-83, Method: Compositional matrix adjust. Identities = 165/358 (46%), Positives = 220/358 (61%), Gaps = 6/358 (1%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTK 68 Y++QL EK RLR+++ F P Q+F S HYR+RAEF +W + Y+ MF Sbjct: 9 SYDRQLEEKTVRLRELLAPFDAPEPQVFDSPREHYRLRAEFRLWREDQKRYYAMFAPGDN 68 Query: 69 ERMRIDYFMP-GSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLL 127 + +P S INALM + P L KLFQ+D+LT+ + A++TL YHR L Sbjct: 69 RTPILLEGLPIASERINALMPVLRERWEASPTLNHKLFQVDFLTTLAGDAMITLCYHRPL 128 Query: 128 DDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSF 187 D + A A + + LIGR+ K+ + DYV E+L VAGRT YRQ E +F Sbjct: 129 D-----AEWQAAAAQLAAELDVSLIGRSKGQKLVIGHDYVTEKLDVAGRTFSYRQPEGAF 183 Query: 188 TQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA 247 TQPN +N ML W A Q DLLELYCGNGNF+L LA +VLA EI+K SV AA Sbjct: 184 TQPNGTVNGKMLNWAFDALGERQDDLLELYCGNGNFTLPLATRVRKVLATEISKTSVNAA 243 Query: 248 RYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307 N+ N V+NV +VR+S++E T+A+ R F RL +D+ SY F ++FVDPPR+G+D Sbjct: 244 LSNLDDNGVDNVTLVRLSAEELTEALNEVRPFRRLHGVDLKSYDFGSVFVDPPRAGMDPD 303 Query: 308 TVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 T + + + ILYISCNP++L +++ L TH +ER ALFDQFPYT HME GVLLVR+ Sbjct: 304 TCELTRRFERILYISCNPETLAANIAQLHDTHRVERCALFDQFPYTHHMESGVLLVRR 361 >gi|254244378|ref|ZP_04937700.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas aeruginosa 2192] gi|126197756|gb|EAZ61819.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas aeruginosa 2192] Length = 363 Score = 313 bits (802), Expect = 3e-83, Method: Compositional matrix adjust. Identities = 170/359 (47%), Positives = 230/359 (64%), Gaps = 9/359 (2%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHD-GDDLYH-IMFDQQT 67 Y QL +K RL ++ F P ++F S HYR+RAEF +W + G++ H MF+Q Sbjct: 11 YAAQLEDKKSRLAGLLAPFAAPAPEVFESPREHYRLRAEFRLWRETGNEKRHYAMFEQGD 70 Query: 68 KER-MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL 126 K + I+ F S IN LM + A +P L KLFQ+++LT+ + A++TL YHR Sbjct: 71 KHTPILIENFPIASRRINELMPRLKAAW-ADPALGFKLFQVEFLTTLAGDALITLCYHRP 129 Query: 127 LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS 186 +DDAWR+ A +L A + + L+GR+ +I + RDYV+E L+VAGR YRQ E + Sbjct: 130 IDDAWRQAAEKL-----AAELGVNLVGRSRGKRIVVGRDYVEEELSVAGRRFRYRQPEGA 184 Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246 FTQPN +N ML W A DLLELYCGNGNF+L LA +VLA EI+K SV A Sbjct: 185 FTQPNGEVNQKMLGWAYEALGQRDDDLLELYCGNGNFTLPLATRVRKVLATEISKSSVNA 244 Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306 A N+A N V+NV +VR+S++E TQA+ R F RL DID+ SY F ++FVDPPR+G+D Sbjct: 245 ALANLADNAVDNVSLVRLSAEELTQALNEVRPFRRLADIDLKSYAFGSVFVDPPRAGMDP 304 Query: 307 ATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 T + + + ILYISCNP++L ++++ L TH I R ALFDQFPYT HME GVLL R+ Sbjct: 305 DTCELARRFERILYISCNPETLAQNIAQLHDTHRISRCALFDQFPYTHHMESGVLLERR 363 >gi|298488848|ref|ZP_07006874.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298156648|gb|EFH97742.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 361 Score = 313 bits (801), Expect = 4e-83, Method: Compositional matrix adjust. Identities = 163/358 (45%), Positives = 221/358 (61%), Gaps = 6/358 (1%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTK 68 Y++QL EK RLR+++ F P Q+F S +YR+RAEF +W + Y+ MF Sbjct: 9 SYDRQLEEKTVRLRELLAPFDAPEPQVFDSPREYYRLRAEFRLWREDQKRYYAMFAPGDN 68 Query: 69 ERMRIDYFMP-GSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLL 127 + +P S INALM + P L KLFQ+D+LT+ + A++T+ YHR L Sbjct: 69 RTPILLEGLPIASERINALMPVLRERWEASPTLNHKLFQVDFLTTLAGDAMITMCYHRPL 128 Query: 128 DDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSF 187 D W+ A A + + LIGR+ K+ + +DYV E+L VAG T YRQ E +F Sbjct: 129 DAEWQAAA-----EQLAAELNVSLIGRSKGQKLIIGQDYVTEKLDVAGHTFSYRQPEGAF 183 Query: 188 TQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA 247 TQPN +N ML W A Q DLLELYCGNGNF+L LA +VLA EI+K SV AA Sbjct: 184 TQPNGTVNGKMLNWAFDALGERQDDLLELYCGNGNFTLPLATRVRKVLATEISKTSVNAA 243 Query: 248 RYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307 N+ N V+NV +VR+S++E T+A+ R F RL +D+ SY F ++FVDPPR+G+D Sbjct: 244 LSNLDDNGVDNVTLVRLSAEELTEALNEVRPFRRLHGVDLKSYDFGSVFVDPPRAGMDPD 303 Query: 308 TVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 T + + + ILYISCNP++L +++ L TH +ER ALFDQFPYT HME GVLLVR+ Sbjct: 304 TCELTRRFERILYISCNPETLAANIAQLHDTHRVERCALFDQFPYTHHMESGVLLVRR 361 >gi|107103819|ref|ZP_01367737.1| hypothetical protein PaerPA_01004890 [Pseudomonas aeruginosa PACS2] gi|218893815|ref|YP_002442684.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas aeruginosa LESB58] gi|254238543|ref|ZP_04931866.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas aeruginosa C3719] gi|226705983|sp|B7V1D2|TRMA_PSEA8 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|126170474|gb|EAZ55985.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas aeruginosa C3719] gi|218774043|emb|CAW29859.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas aeruginosa LESB58] Length = 363 Score = 313 bits (801), Expect = 4e-83, Method: Compositional matrix adjust. Identities = 170/359 (47%), Positives = 230/359 (64%), Gaps = 9/359 (2%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHD-GDDLYH-IMFDQQT 67 Y QL +K RL ++ F P ++F S HYR+RAEF +W + G++ H MF+Q Sbjct: 11 YAAQLEDKKSRLAGLLAPFAAPAPEVFESPREHYRLRAEFRLWRETGNEKRHYAMFEQGD 70 Query: 68 KER-MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL 126 K + I+ F S IN LM + A +P L KLFQ+++LT+ + A++TL YHR Sbjct: 71 KHTPILIEDFPIASRRINELMPRLKAAW-ADPALGFKLFQVEFLTTLAGDALITLCYHRP 129 Query: 127 LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS 186 +DDAWR+ A +L A + + L+GR+ +I + RDYV+E L+VAGR YRQ E + Sbjct: 130 IDDAWRQAAEKL-----AAELGVNLVGRSRGKRIVVGRDYVEEELSVAGRRFRYRQPEGA 184 Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246 FTQPN +N ML W A DLLELYCGNGNF+L LA +VLA EI+K SV A Sbjct: 185 FTQPNGEVNQKMLGWAYEALGQRDDDLLELYCGNGNFTLPLATRVRKVLATEISKSSVNA 244 Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306 A N+A N V+NV +VR+S++E TQA+ R F RL DID+ SY F ++FVDPPR+G+D Sbjct: 245 ALANLADNAVDNVSLVRLSAEELTQALNEVRPFRRLADIDLKSYAFGSVFVDPPRAGMDP 304 Query: 307 ATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 T + + + ILYISCNP++L ++++ L TH I R ALFDQFPYT HME GVLL R+ Sbjct: 305 DTCELARRFERILYISCNPETLAQNIAQLHDTHRISRCALFDQFPYTHHMESGVLLERR 363 >gi|116052866|ref|YP_793183.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas aeruginosa UCBPP-PA14] gi|122257123|sp|Q02FV3|TRMA_PSEAB RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|115588087|gb|ABJ14102.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas aeruginosa UCBPP-PA14] Length = 363 Score = 313 bits (801), Expect = 4e-83, Method: Compositional matrix adjust. Identities = 171/359 (47%), Positives = 229/359 (63%), Gaps = 9/359 (2%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHD-GDDLYH-IMFDQQT 67 Y QL +K RL ++ F P +IF S HYR+RAEF +W + G++ H MF+Q Sbjct: 11 YAAQLEDKKSRLAGLLAPFAAPAPEIFESPREHYRLRAEFRLWRETGNEKRHYAMFEQGD 70 Query: 68 KER-MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL 126 K + I+ F S IN LM + A +P L KLFQ+++LT+ + A++TL YHR Sbjct: 71 KHTPILIEDFPIASRRINELMPRLKAAW-ADPALGFKLFQVEFLTTLAGDALITLCYHRP 129 Query: 127 LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS 186 +DDAWR+ A +L A + + L+GR+ +I + RDYV+E L+VAGR YRQ E + Sbjct: 130 IDDAWRQAAEKL-----AAELGVNLVGRSRGKRIVVGRDYVEEELSVAGRRFRYRQPEGA 184 Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246 FTQPN +N ML W A DLLELYCGNGNF+L LA +VLA EI+K SV A Sbjct: 185 FTQPNGEVNQKMLGWAYEALGQRDDDLLELYCGNGNFTLPLATRVRKVLATEISKSSVNA 244 Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306 A N+A N V+NV +VR+S++E TQA+ R F RL DID+ SY F +FVDPPR+G+D Sbjct: 245 ALANLADNAVDNVSLVRLSAEELTQALNEVRPFRRLADIDLKSYAFGNVFVDPPRAGMDP 304 Query: 307 ATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 T + + + ILYISCNP++L ++++ L TH I R ALFDQFPYT HME GVLL R+ Sbjct: 305 DTCELTRRFERILYISCNPETLAQNIAQLHDTHRISRCALFDQFPYTHHMESGVLLERR 363 >gi|296391546|ref|ZP_06881021.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas aeruginosa PAb1] Length = 363 Score = 312 bits (800), Expect = 4e-83, Method: Compositional matrix adjust. Identities = 170/359 (47%), Positives = 230/359 (64%), Gaps = 9/359 (2%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHD-GDDLYH-IMFDQQT 67 Y QL +K RL ++ F P ++F S HYR+RAEF +W + G++ H MF+Q Sbjct: 11 YAAQLEDKKSRLAGLLAPFAAPAPEVFESPREHYRLRAEFRLWRETGNEKRHYAMFEQGD 70 Query: 68 KER-MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL 126 K + I+ F S IN LM + A +P L KLFQ+++LT+ + A++TL YHR Sbjct: 71 KHTPILIEDFPIASRRINELMPRLKAAW-ADPALGFKLFQVEFLTTLAGDALITLCYHRP 129 Query: 127 LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS 186 +DDAWR+ A +L A + + L+GR+ +I + RDYV+E L+VAGR YRQ E + Sbjct: 130 IDDAWRQAAEKL-----AAELGVNLVGRSRGKRIVVGRDYVEEELSVAGRRFRYRQPEGA 184 Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246 FTQPN +N ML W A DLLELYCGNGNF+L LA +VLA EI+K SV A Sbjct: 185 FTQPNGEVNQKMLGWAYEALGQRDDDLLELYCGNGNFTLPLATRVRKVLATEISKSSVNA 244 Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306 A N+A N V+NV +VR+S++E TQA+ R F RL DID+ SY F ++FVDPPR+G+D Sbjct: 245 ALANLADNAVDNVSLVRLSAEELTQALNEVRPFRRLADIDLKSYAFGSVFVDPPRAGMDP 304 Query: 307 ATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 T + + + ILYISCNP++L ++++ L TH I R ALFDQFPYT HME GVLL R+ Sbjct: 305 DTCELTRRFERILYISCNPETLAQNIAQLHDTHRISRCALFDQFPYTHHMESGVLLERR 363 >gi|312963175|ref|ZP_07777660.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas fluorescens WH6] gi|311282686|gb|EFQ61282.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas fluorescens WH6] Length = 359 Score = 312 bits (800), Expect = 4e-83, Method: Compositional matrix adjust. Identities = 159/358 (44%), Positives = 221/358 (61%), Gaps = 6/358 (1%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTK 68 +Y QL +KV RLR ++ F P Q+F S H+R+RAEF +W + + ++ MF Q K Sbjct: 7 RYTAQLQDKVTRLRDLLAPFDAPEPQVFDSPLQHFRLRAEFRLWREAGERHYAMFSQDDK 66 Query: 69 ER-MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLL 127 + I+ F S IN LM ++ A + L KLFQ+++LT+ + A++TL YHR L Sbjct: 67 RTPILIEEFPIASQRINQLMPQLKAAWQASAALSHKLFQVEFLTTLAGDAMITLCYHRPL 126 Query: 128 DDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSF 187 D+ W A +L A + +IGR+ + + DYV E+L V GRT YRQ E +F Sbjct: 127 DEHWHTAANKL-----AADLNVSIIGRSKGKRDVIGHDYVVEKLEVGGRTFSYRQPEGAF 181 Query: 188 TQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA 247 TQPN +N ML W A DLLELYCGNGNF+L LA VLA EI+K SV AA Sbjct: 182 TQPNGTVNQKMLNWAYEALGDRPDDLLELYCGNGNFTLPLATRVRNVLATEISKTSVNAA 241 Query: 248 RYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307 N+ N V+NV +VR+S++E T+A+ R F RL ID+ SY F ++FVDPPR+G+D Sbjct: 242 LSNLDENAVDNVTLVRLSAEELTEALNEVRPFRRLHGIDLKSYEFGSVFVDPPRAGMDPD 301 Query: 308 TVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 T + + + +ILYISCNP++L +++ L TH I + A+FDQFP+T HME GVLL R+ Sbjct: 302 TCELTRRFDNILYISCNPETLAANIAQLHDTHRITQCAMFDQFPWTHHMESGVLLTRR 359 >gi|15599914|ref|NP_253408.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas aeruginosa PAO1] gi|20178166|sp|Q9HV78|TRMA_PSEAE RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|9950979|gb|AAG08106.1|AE004885_11 tRNA (uracil-5-)-methyltransferase [Pseudomonas aeruginosa PAO1] Length = 363 Score = 312 bits (799), Expect = 6e-83, Method: Compositional matrix adjust. Identities = 169/359 (47%), Positives = 230/359 (64%), Gaps = 9/359 (2%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHD-GDDLYH-IMFDQQT 67 Y QL +K RL ++ F P ++F S HYR+RAEF +W + G++ H MF+Q Sbjct: 11 YAAQLEDKKSRLAGLLAPFAAPAPEVFESPREHYRLRAEFRLWRETGNEKRHYAMFEQGD 70 Query: 68 KER-MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL 126 K + ++ F S IN LM + A +P L KLFQ+++LT+ + A++TL YHR Sbjct: 71 KHTPILLEDFPIASRRINELMPRLKAAW-ADPALGFKLFQVEFLTTLAGDALITLCYHRP 129 Query: 127 LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS 186 +DDAWR+ A +L A + + L+GR+ +I + RDYV+E L+VAGR YRQ E + Sbjct: 130 IDDAWRQAAEKL-----AAELGVNLVGRSRGKRIVVGRDYVEEELSVAGRRFRYRQPEGA 184 Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246 FTQPN +N ML W A DLLELYCGNGNF+L LA +VLA EI+K SV A Sbjct: 185 FTQPNGEVNQKMLGWAYEALGQRDDDLLELYCGNGNFTLPLATRVRKVLATEISKSSVNA 244 Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306 A N+A N V+NV +VR+S++E TQA+ R F RL DID+ SY F ++FVDPPR+G+D Sbjct: 245 ALANLADNAVDNVSLVRLSAEELTQALNEVRPFRRLADIDLKSYAFGSVFVDPPRAGMDP 304 Query: 307 ATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 T + + + ILYISCNP++L ++++ L TH I R ALFDQFPYT HME GVLL R+ Sbjct: 305 DTCELARRFERILYISCNPETLAQNIAQLHDTHRISRCALFDQFPYTHHMESGVLLERR 363 >gi|229592733|ref|YP_002874852.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas fluorescens SBW25] gi|262827930|sp|C3K2F6|TRMA_PSEFS RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|229364599|emb|CAY52496.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas fluorescens SBW25] Length = 359 Score = 311 bits (798), Expect = 8e-83, Method: Compositional matrix adjust. Identities = 158/358 (44%), Positives = 221/358 (61%), Gaps = 6/358 (1%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTK 68 +Y QL +KV RLR ++ F P Q+F S ++R+RAEF +W +G + ++ MF Q K Sbjct: 7 RYTAQLQDKVTRLRDLLAPFDAPEPQVFDSPLQNFRLRAEFRLWREGGERHYAMFSQDDK 66 Query: 69 ER-MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLL 127 + I+ F S IN LM ++ A + L KLFQ+++LT+ + A++TL YHR L Sbjct: 67 RTPILIEEFPIASQRINQLMPQLKAAWQASAALSHKLFQVEFLTTLAGDAMITLCYHRPL 126 Query: 128 DDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSF 187 D+ W A +L A + +IGR+ + + DYV E+L V GRT YRQ E +F Sbjct: 127 DEHWHTAANKL-----ATDLNVSIIGRSKGKRDVIGHDYVVEKLEVGGRTFSYRQPEGAF 181 Query: 188 TQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA 247 TQPN +N ML W A DLLELYCGNGNF+L LA +VLA EI+K SV AA Sbjct: 182 TQPNGTVNQKMLNWAYDALGDRPDDLLELYCGNGNFTLPLATRVRKVLATEISKTSVNAA 241 Query: 248 RYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307 N+ N V NV +VR+S++E T+A+ R F RL ID+ Y F ++FVDPPR+G+D Sbjct: 242 LSNLDENAVGNVTLVRLSAEELTEALNEVRPFRRLHGIDLKRYEFSSVFVDPPRAGMDPD 301 Query: 308 TVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 T + + + +ILYISCNP++L +++ L TH I + A+FDQFP+T HME GVLL R+ Sbjct: 302 TCELTRRFDNILYISCNPETLAANIAQLHDTHRITKCAMFDQFPWTHHMESGVLLTRR 359 >gi|119503351|ref|ZP_01625435.1| tRNA (uracil-5-)-methyltransferase [marine gamma proteobacterium HTCC2080] gi|119460997|gb|EAW42088.1| tRNA (uracil-5-)-methyltransferase [marine gamma proteobacterium HTCC2080] Length = 366 Score = 311 bits (797), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 161/361 (44%), Positives = 224/361 (62%), Gaps = 8/361 (2%) Query: 8 DQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQT 67 D YEQ LA K+ L P + +S P+ +R+RAEF IWHDGDDL++ MF + Sbjct: 9 DNYEQLLALKIAPLIDAFTELGAPAPVVVKSPPLAFRLRAEFRIWHDGDDLFYAMFRPGS 68 Query: 68 -KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL 126 K+ + ++ F S I LM E++ +R LR +LFQI++L++ + +VTLIYHR Sbjct: 69 PKDPVAVERFPIASQAIQQLMPELLQGLRNNTQLRQRLFQIEFLSTLTGDMLVTLIYHRA 128 Query: 127 LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS 186 LDD+W A L A+ I+LIGR+ K K L+ D V E L + + ++Q + + Sbjct: 129 LDDSWEIEAKEL-----AQHLGIKLIGRSRKQKKVLELDSVQETLCINDKQYHFKQPDQA 183 Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246 FTQPN +N M+EW A K + DLLELYCG GNFSL LA F+RVLA E++K ++ A Sbjct: 184 FTQPNGHVNQRMIEWADRACKDLSADLLELYCGIGNFSLPLAHRFNRVLATEVSKAAIAA 243 Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK--DIDIHSYRFKTIFVDPPRSGL 304 A N N +NNV+ +R+S++E T+AM R F RL + + Y+ T+ VDPPR+GL Sbjct: 244 AIENRKRNAINNVEFIRLSAQEMTEAMSGARPFRRLAHLPVPLTEYQLDTLLVDPPRAGL 303 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 DDAT+ + + +ILYISCNP +L +L L TH I +LA FDQFPYT H+E GVLL R Sbjct: 304 DDATLALASGFRNILYISCNPHTLLENLKALEPTHQITQLAFFDQFPYTHHLESGVLLTR 363 Query: 365 K 365 + Sbjct: 364 R 364 >gi|308801713|ref|XP_003078170.1| tRNA (ISS) [Ostreococcus tauri] gi|116056621|emb|CAL52910.1| tRNA (ISS) [Ostreococcus tauri] Length = 415 Score = 310 bits (793), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 167/375 (44%), Positives = 228/375 (60%), Gaps = 25/375 (6%) Query: 8 DQYEQQLAEKVDRLRQ-----MMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIM 62 + Y ++LAEK+ R L Q + R+E +RMRAEF +WHDGD Y+ M Sbjct: 49 ESYSEELAEKIAIARSHFDDVCALPTQTETHESARTE---FRMRAEFKVWHDGDRSYYAM 105 Query: 63 FDQ-QTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTL 121 D + KE + I F S I LM ++ + LR KLFQ ++LT+ + A+V+L Sbjct: 106 SDSDRPKEPVEIADFPMASKKIRELMPALLREVTKTETLRRKLFQANFLTTTTGDAVVSL 165 Query: 122 IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYR 181 +YHR LDD W R +A+ AR I +IGRA K K L +D+V E++ V GR Y+ Sbjct: 166 LYHRQLDDNWE----REAEAMRAR-LGIDIIGRARKQKKVLAKDFVTEKVVVDGREFSYK 220 Query: 182 QIENSFTQPNAGINVHMLEWV--LAATKGIQG---------DLLELYCGNGNFSLVLARH 230 Q+E SFTQPNAGI MLEW +A G DLLELYCGNG+F++ LA Sbjct: 221 QLEGSFTQPNAGIAAQMLEWARSVATNDSPDGEGSVDVSTRDLLELYCGNGHFTIALAPL 280 Query: 231 FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY 290 F + LA EI+K SV AA+ N+AAN V+N+ I R+S++E + A+ RE+ RLKDI++ SY Sbjct: 281 FRKCLATEISKSSVAAAQVNMAANGVDNLVIARLSAEELSDALNGGREYTRLKDINLASY 340 Query: 291 RFKTIFVDPPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQF 350 TI VDPPR+G+ D + I+YISCNP++L RD +LS TH ++R A+FDQF Sbjct: 341 DLSTILVDPPRAGMGDEVSTFCAQFERIIYISCNPETLARDCRVLSKTHDVKRFAVFDQF 400 Query: 351 PYTRHMECGVLLVRK 365 PYT H+E GVLL ++ Sbjct: 401 PYTPHLESGVLLKKR 415 >gi|152990451|ref|YP_001356173.1| tRNA (uracil-5-)-methyltransferase [Nitratiruptor sp. SB155-2] gi|262827911|sp|A6Q2V7|TRMA_NITSB RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|151422312|dbj|BAF69816.1| tRNA (uracil-5-)-methyltransferase [Nitratiruptor sp. SB155-2] Length = 360 Score = 309 bits (792), Expect = 4e-82, Method: Compositional matrix adjust. Identities = 158/367 (43%), Positives = 240/367 (65%), Gaps = 21/367 (5%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHI 61 S +L YE+QL +KV ++ +IF S+ YR RAEF + DG+ H Sbjct: 11 SCSLYEGGYEEQLQKKVHEFEKLFGL----EPEIFPSKQSRYRARAEFR-YIDGEYAMHR 65 Query: 62 MFDQQTKERMRIDYFMPGSLLINALMIEMMATIRL----EPLLRAKLFQIDYLTSQSDQA 117 + + K + ID ++ + E+M+ +RL +L +L+++D+L+ S ++ Sbjct: 66 LHE---KGLVTID----ACEMVLESIYELMSKLRLLINKHEILSNRLYRVDFLSGLSGES 118 Query: 118 IVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRT 177 +VT++YHR +D+AW + A + ALH I ++GR+ KI + ++Y+ E+L V + Sbjct: 119 LVTMVYHRPIDEAWEKAANEIAKALH-----IDIVGRSRGKKIVIGKEYITEKLPVFEKE 173 Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAV 237 ++R E SFTQPN +N+ M+EW K +QGDLLELYCG GNF+L L+R+F++VLA Sbjct: 174 FLFRHYEGSFTQPNPYVNIKMIEWAGRIAKDLQGDLLELYCGAGNFTLPLSRYFEKVLAT 233 Query: 238 EIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFV 297 E+ K S++AA+ N+A N + NV+ VR+SS+E TQA+R R+F RL++ID+HSY F+T+FV Sbjct: 234 EVNKSSIKAAKENVALNGIENVEFVRLSSQEVTQALRGVRDFRRLENIDLHSYNFQTVFV 293 Query: 298 DPPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHME 357 DPPR GLDD T +V+ + +I+YISCNP +L RDL LS THT++++A+FDQFPYT H+E Sbjct: 294 DPPRCGLDDDTRELVREFDNIVYISCNPQTLHRDLEELSKTHTVQKVAVFDQFPYTPHLE 353 Query: 358 CGVLLVR 364 GV L R Sbjct: 354 SGVYLTR 360 >gi|226942928|ref|YP_002798001.1| tRNA (uracil-5-)-methyltransferase [Azotobacter vinelandii DJ] gi|259547819|sp|C1DLS8|TRMA_AZOVD RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|226717855|gb|ACO77026.1| tRNA (uracil-5-)-methyltransferase [Azotobacter vinelandii DJ] Length = 361 Score = 306 bits (783), Expect = 5e-81, Method: Compositional matrix adjust. Identities = 160/358 (44%), Positives = 221/358 (61%), Gaps = 7/358 (1%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTK 68 Y+ QLA+K RL ++ F P ++F S HYR+RAEF +W +G+ ++ MFD K Sbjct: 10 HYDAQLADKQARLSGLLAPFAAPEPEVFDSPREHYRLRAEFRLWREGEARHYAMFDPGDK 69 Query: 69 ER-MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLL 127 + + +D F S IN LM + A L KLFQ+++LT+ + A++TL YHR L Sbjct: 70 RKPILLDDFPIASERINDLMPRLKAAWE-NAALGFKLFQVEFLTTLAGDALITLCYHRPL 128 Query: 128 DDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSF 187 D W+ A RL A + + ++GR+ ++ + RDYV+E L VAGR YRQ E +F Sbjct: 129 DTFWQTAAERL-----AAELGVSIVGRSRGQRLVVGRDYVEEELEVAGRRFRYRQPEGAF 183 Query: 188 TQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA 247 TQPN + ML W DLLELYCGNGNF+L LA RVLA EI+K SV AA Sbjct: 184 TQPNGVVCRKMLNWAHDVLGERDDDLLELYCGNGNFTLPLATRVRRVLATEISKTSVNAA 243 Query: 248 RYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307 N+ +N V+NV +VR+S++E TQA+ R F RL +D+ Y F ++FVDPPR+G+D Sbjct: 244 LTNLESNGVDNVTLVRLSAEELTQALNEVRPFRRLAGVDLKGYDFGSLFVDPPRAGMDPD 303 Query: 308 TVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 T + + + ILYISCNP++L +++ L TH + R ALFDQFPYT HME GVLL R+ Sbjct: 304 TCELARRFGRILYISCNPETLAANIARLHDTHRVVRCALFDQFPYTHHMESGVLLERR 361 >gi|313682239|ref|YP_004059977.1| tRNA (uracil-5-)-methyltransferase [Sulfuricurvum kujiense DSM 16994] gi|313155099|gb|ADR33777.1| tRNA (uracil-5-)-methyltransferase [Sulfuricurvum kujiense DSM 16994] Length = 371 Score = 304 bits (778), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 154/358 (43%), Positives = 219/358 (61%), Gaps = 6/358 (1%) Query: 8 DQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQT 67 + YE QL KV ++++ N+ + S YR RAEF I+HD + + M Sbjct: 17 EGYEGQLERKVSAVQELFFPLYSGNITVCPSPAERYRSRAEFKIYHDDGGISYAMNRLDR 76 Query: 68 KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLL 127 + ++I+ S I ++M +++ I + + KLF +D+L S + ++++YH+ L Sbjct: 77 QGALKIERCGIVSPSIASVMEKLLIEIS-DLGISHKLFGVDFLASGEGEITLSMLYHKAL 135 Query: 128 DDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSF 187 DD W+ A L ++ + +IGR+ K K+ L +DYV E L + GR Y IENSF Sbjct: 136 DDEWKSKAHELE-----KRLGVYVIGRSRKQKVVLSQDYVTETLNIGGRMYRYIHIENSF 190 Query: 188 TQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA 247 TQPN +N M+ W L I GDLLELYCG GNF++ A FDRVLA EI+K S+ AA Sbjct: 191 TQPNPRVNEQMITWSLGQIDKIGGDLLELYCGAGNFTIPFATKFDRVLATEISKASIHAA 250 Query: 248 RYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307 + N+A N V N++ VR+S++EFTQA+ REF RL+ +++ Y KT+FVDPPR+GL + Sbjct: 251 KQNMALNGVGNIEFVRLSAEEFTQALDGVREFRRLEGLNVADYHLKTLFVDPPRAGLGEE 310 Query: 308 TVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 + HILYISCNP++L RDL ILS THTIE +A FDQFPYT H+E GV L +K Sbjct: 311 PCAFASRFDHILYISCNPETLLRDLEILSRTHTIEAMAAFDQFPYTHHLEMGVKLTKK 368 >gi|78777216|ref|YP_393531.1| tRNA (uracil-5-)-methyltransferase [Sulfurimonas denitrificans DSM 1251] gi|123550331|sp|Q30RT5|TRMA_SULDN RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|78497756|gb|ABB44296.1| tRNA (uracil-5-)-methyltransferase [Sulfurimonas denitrificans DSM 1251] Length = 369 Score = 304 bits (778), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 156/357 (43%), Positives = 223/357 (62%), Gaps = 7/357 (1%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69 YE QL++KV+ +++ F + + +F S +YR R+EF IWH+GD+ + ++ K Sbjct: 19 YETQLSQKVELNKELFAPFYMGKISVFESPRSNYRSRSEFKIWHEGDEKINYAMNRADKG 78 Query: 70 R-MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLD 128 + ID S I ALM +++ I+ + KLF +D+L+S S + +V+L+YHR LD Sbjct: 79 GVILIDECPQVSSAIFALMPKLLRAIKRHKI-DFKLFGVDFLSSNSGEIVVSLLYHRALD 137 Query: 129 DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFT 188 ++E A + D L I +IGR+ K+ + +DYV E L V G + IENSFT Sbjct: 138 STFKEIAEIISDEL-----DIYIIGRSRGQKVVIKQDYVTEILHVDGVEFKFNYIENSFT 192 Query: 189 QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248 QPNA +N M+ W L + DLLELYCG GNF++ A + ++LA EI+K S+ AA+ Sbjct: 193 QPNAKVNEQMIGWALRELPNMDADLLELYCGAGNFTIPFASKYRKILATEISKSSINAAK 252 Query: 249 YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDAT 308 N++ N V N+ VRM +EF +A+ R FNR+K+IDI SY KTIFVDPPRSG+D+AT Sbjct: 253 SNMSLNKVKNISFVRMGVEEFVEALDGVRIFNRMKEIDIDSYEIKTIFVDPPRSGMDEAT 312 Query: 309 VGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 Y +I+YISCNP +L RDL +L+ TH + +ALFDQFPYT H E G LV+K Sbjct: 313 CRFASRYENIIYISCNPQTLLRDLELLTKTHNVIDMALFDQFPYTHHAEMGAKLVKK 369 >gi|307721190|ref|YP_003892330.1| tRNA (uracil-5-)-methyltransferase [Sulfurimonas autotrophica DSM 16294] gi|306979283|gb|ADN09318.1| tRNA (uracil-5-)-methyltransferase [Sulfurimonas autotrophica DSM 16294] Length = 370 Score = 301 bits (772), Expect = 9e-80, Method: Compositional matrix adjust. Identities = 154/356 (43%), Positives = 221/356 (62%), Gaps = 6/356 (1%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69 YE QL EK+ ++ + ++ +++S HYR R+EF IWH DD+ + M K Sbjct: 19 YEAQLNEKLQINKERFAPYFSGDISVYKSLDEHYRARSEFKIWHIDDDISYAMNHIDKKG 78 Query: 70 RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDD 129 + ID + I ALM ++++ I++ + KLF D+L+S S + +V+L+YHR LD Sbjct: 79 VVLIDECPQVNEYIAALMPQLLSAIKVNDI-DFKLFGADFLSSSSGEIVVSLLYHRALDV 137 Query: 130 AWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQ 189 W+E A ++ A+ I +IGR+ K K+ + +DY+ E L V ++ IENSFTQ Sbjct: 138 VWQEKAKKI-----AQDLNIYIIGRSRKQKVIIGQDYITETLHVNNDVYKFKYIENSFTQ 192 Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249 PN +N M+ W A Q DLLELYCG GNF++ A+ F++VLA EI+K S+ AA+ Sbjct: 193 PNPRVNEQMIAWAAAKFSDTQDDLLELYCGAGNFTIPFAKKFNKVLATEISKSSINAAKA 252 Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309 N+ N V+N++ VRMS +EF A+ REF R+KDIDI +Y +IFVDPPRSG+ + + Sbjct: 253 NMHLNDVHNIEFVRMSVEEFVDALEGVREFRRMKDIDIKNYTINSIFVDPPRSGMGEYSC 312 Query: 310 GMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 Y HI+YISCNP +L DL IL TH I +ALFDQFPYT H+E GV L++K Sbjct: 313 KFASRYNHIVYISCNPQTLLDDLDILCKTHDITDMALFDQFPYTHHVEMGVKLIKK 368 >gi|161870527|ref|YP_001599699.1| tRNA (uracil-5-)-methyltransferase [Neisseria meningitidis 053442] gi|161596080|gb|ABX73740.1| tRNA (uracil-5-)-methyltransferase [Neisseria meningitidis 053442] Length = 316 Score = 300 bits (769), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 149/317 (47%), Positives = 208/317 (65%), Gaps = 11/317 (3%) Query: 58 LYHIMFDQQTKER----MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQ 113 +++ MF++ K +R D F S +N LM E++A LR + + +++L++ Sbjct: 1 MFYAMFEKGQKAGGASLIRCDRFEAASEAVNRLMPELIAVAAQSAELRNRWYAVEFLSTL 60 Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTV 173 S + +VT+IYH+ LD+ W ++ I +IGR+ KI L +DYV E L V Sbjct: 61 SGEMLVTMIYHKRLDNEWM-----QAAQALQQQLDISVIGRSRGQKIVLKQDYVTETLKV 115 Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDR 233 R YRQIE SFTQPNA + MLEW A +G+ GDLLELYCGNGNF+L L+ F+R Sbjct: 116 GNRDFRYRQIEGSFTQPNAAVCQKMLEWACGAAEGLDGDLLELYCGNGNFTLPLSEKFER 175 Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYR 291 VLA EI+K SV AA++NI AN + N+KI R+S++EFT+A +REF RLKD I + Y Sbjct: 176 VLATEISKTSVSAAQWNIEANRIGNIKIARLSAEEFTEAYTGKREFKRLKDGGIALTDYA 235 Query: 292 FKTIFVDPPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFP 351 F TIFVDPPR+G+D+ T+ +V + +I+YISCNP++L +L L+ THT+ER ALFDQFP Sbjct: 236 FSTIFVDPPRAGIDEETLKLVSQFDNIIYISCNPETLRTNLDTLAETHTVERAALFDQFP 295 Query: 352 YTRHMECGVLLVRKPSG 368 +T H+E GVLL +K G Sbjct: 296 FTHHIESGVLLKKKILG 312 >gi|157738407|ref|YP_001491091.1| tRNA (uracil-5-)-methyltransferase [Arcobacter butzleri RM4018] gi|172045655|sp|A8EWU8|TRMA_ARCB4 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|157700261|gb|ABV68421.1| tRNA (uracil-5-)-methyltransferase [Arcobacter butzleri RM4018] Length = 375 Score = 300 bits (767), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 148/365 (40%), Positives = 227/365 (62%), Gaps = 9/365 (2%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIW-HDGDDLYH 60 S TL YE+QL K+ R ++ F + I +S ++R RAEF IW G++ Sbjct: 11 SCTLFDKTYEEQLNYKIQREKERFSNFTNIDFDIIKSNESNFRNRAEFRIWWEKGENNKE 70 Query: 61 IM---FDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQA 117 I+ + K ++I+ S I LM +++ ++ + L KLF +++L S + Sbjct: 71 ILSYAMNDFKKNILKINSCEMVSFHIKELMPKLIDELQNDLELSFKLFAVEFLGSSTKDM 130 Query: 118 IVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRT 177 +VTLIYH+ L+++W + A + +K I++IGR+ K ++ L DY++E L ++ + Sbjct: 131 LVTLIYHKKLEESWIQKAKEIE-----KKLNIKIIGRSKKQRLVLTNDYINETLNISNQN 185 Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAV 237 + EN FTQPN +NV M+EWVL TK DL ELYCG GNF++ L+ F +VLA Sbjct: 186 FFFAYEENGFTQPNTNVNVQMIEWVLENTKNSSKDLCELYCGGGNFTIPLSTKFRKVLAT 245 Query: 238 EIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFV 297 EI+K S+++A N + N + ++ +RMS+++F QA+ + R FNRLKDI++ Y F TIF+ Sbjct: 246 EISKTSIKSALRNCSLNKIESISFIRMSAEDFVQALNKVRAFNRLKDINLDDYEFDTIFM 305 Query: 298 DPPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHME 357 DPPRSGLDD T + + + +I+YISCNP++L RDL L+ TH IE+ ALFDQF +T H+E Sbjct: 306 DPPRSGLDDTTRNLAKDFENIIYISCNPETLHRDLEELTKTHEIEKFALFDQFAFTNHIE 365 Query: 358 CGVLL 362 GV+L Sbjct: 366 SGVIL 370 >gi|145344269|ref|XP_001416659.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144576885|gb|ABO94952.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 418 Score = 300 bits (767), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 160/373 (42%), Positives = 222/373 (59%), Gaps = 21/373 (5%) Query: 9 QYEQQLAEKVDRLRQMM--LAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ- 65 Y+++L EK R +A + F S +RMRAEF +WHDGD Y M D Sbjct: 50 SYDEELREKTAHARAHFDGVATLPSRTETFESAREEFRMRAEFKVWHDGDRSYFAMCDSD 109 Query: 66 QTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHR 125 + K+ + + F S I LM E++ + LR KLFQ ++LT+ + A+V+L+YHR Sbjct: 110 RPKDPVEVVDFPMASARIRELMPELLREVTATETLRRKLFQANFLTTTTGDAVVSLLYHR 169 Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIEN 185 LD+ W R +A+ AR I +IGRA K K+ L +D+V E++ + G+ Y+Q+E Sbjct: 170 QLDEDWE----REAEAMRAR-LGIDVIGRARKQKLVLAKDFVTEKVLIDGKEFSYKQLEG 224 Query: 186 SFTQPNAGINVHMLEW------------VLAAT-KGIQGDLLELYCGNGNFSLVLARHFD 232 SFTQPNAGI ML W V AAT + D LELYCGNG+F++ LA F Sbjct: 225 SFTQPNAGIAAQMLAWARSAAVSDSPDVVAAATPRDANRDFLELYCGNGHFTIALAPLFR 284 Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292 + LA EI+K SV AA N+AAN ++NV R+S++E A+ RE+ RLKDID+ +Y Sbjct: 285 KCLATEISKSSVAAAHVNMAANGIDNVVTARLSAEELCDALDGGREYTRLKDIDLTTYDL 344 Query: 293 KTIFVDPPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPY 352 T+ VDPPR+G+ D + I+YISCNP++L RD IL TH I+R A+FDQFPY Sbjct: 345 STVLVDPPRAGMGDEVSKFCARFDRIIYISCNPETLARDCKILGETHEIKRFAVFDQFPY 404 Query: 353 TRHMECGVLLVRK 365 T H+E G LLV++ Sbjct: 405 TPHLESGALLVKR 417 >gi|330895517|gb|EGH27828.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas syringae pv. japonica str. M301072PT] Length = 333 Score = 299 bits (765), Expect = 5e-79, Method: Compositional matrix adjust. Identities = 157/336 (46%), Positives = 207/336 (61%), Gaps = 6/336 (1%) Query: 31 PNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMP-GSLLINALMIE 89 P Q+F S HYR+RAEF +W + Y+ MF + +P S INALM Sbjct: 3 PEPQVFDSPREHYRLRAEFRLWREDQKRYYAMFAPGDNRTPILLEGLPIASERINALMPV 62 Query: 90 MMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQI 149 + P L KLFQ+D+LT+ + A++TL YHR LD W+ A A + + Sbjct: 63 LRERWEASPTLNHKLFQVDFLTTLAGDAMITLCYHRPLDAEWQAAA-----EQLAAELDV 117 Query: 150 QLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGI 209 LIGR+ K+ + DYV E+L VAGRT YRQ E +FTQPN +N ML W A Sbjct: 118 SLIGRSKGQKLVIGHDYVTEKLDVAGRTFSYRQPEGAFTQPNGTVNGKMLNWAFDALGER 177 Query: 210 QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269 Q DLLELYCGNGNF+L LA +VLA EI+K SV AA N+ N V+NV +VR+S++E Sbjct: 178 QDDLLELYCGNGNFTLPLATRVRKVLATEISKTSVNAALSNLDENGVDNVTLVRLSAEEL 237 Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYISCNPDSLC 329 T+A+ R F RL +D+ SY F ++FVDPPR+G+D T + + + ILYISCNP++L Sbjct: 238 TEALNEVRPFRRLHGVDLKSYDFGSVFVDPPRAGMDPDTCELTRRFERILYISCNPETLA 297 Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 +++ L TH +ER ALFDQFPYT HME GVLLVR+ Sbjct: 298 ANIAQLHDTHRVERCALFDQFPYTHHMESGVLLVRR 333 >gi|260899154|ref|ZP_05907549.1| tRNA (uracil-5-)-methyltransferase [Vibrio parahaemolyticus AQ4037] gi|308107497|gb|EFO45037.1| tRNA (uracil-5-)-methyltransferase [Vibrio parahaemolyticus AQ4037] Length = 229 Score = 298 bits (763), Expect = 8e-79, Method: Compositional matrix adjust. Identities = 140/226 (61%), Positives = 174/226 (76%), Gaps = 2/226 (0%) Query: 142 LHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEW 201 L+ + + +IGRA K KI LDRDYV E+L V G++ IY+Q+ENSFTQPN + MLEW Sbjct: 3 LNDEGFNLNIIGRARKMKIILDRDYVIEKLDVNGQSYIYQQVENSFTQPNGKVAEKMLEW 62 Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261 + T+ GDLLELYCGNGNFSL LA++FDRVLA E+AKPSVE+A+YNIAAN ++NV+I Sbjct: 63 AVDCTQESTGDLLELYCGNGNFSLALAQNFDRVLATELAKPSVESAQYNIAANKIDNVQI 122 Query: 262 VRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHIL 319 +RMS++EFT+AM +REF RLKD +D+ SY TIFVDPPR+G+D T MVQ Y I+ Sbjct: 123 IRMSAEEFTEAMEGKREFRRLKDNGVDLKSYNCNTIFVDPPRAGMDVDTCKMVQGYERIM 182 Query: 320 YISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 YISCNP++L +L ILS TH + R ALFDQFPYT HME GVLL RK Sbjct: 183 YISCNPETLKENLDILSETHNVTRFALFDQFPYTHHMEAGVLLERK 228 >gi|319956633|ref|YP_004167896.1| tRNA (uracil-5-)-methyltransferase [Nitratifractor salsuginis DSM 16511] gi|319419037|gb|ADV46147.1| tRNA (uracil-5-)-methyltransferase [Nitratifractor salsuginis DSM 16511] Length = 374 Score = 297 bits (760), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 152/365 (41%), Positives = 221/365 (60%), Gaps = 6/365 (1%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHI 61 S TL YE+QL K +RLR ++ F ++ F S HYR RAEF IWH+G + Sbjct: 11 SCTLYKLDYEKQLERKAERLRGLLAPFYDGEIERFASPDSHYRARAEFRIWHEGGRADYA 70 Query: 62 MFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTL 121 M + + I+ + M ++ + P+L KLF +++L + + + ++T+ Sbjct: 71 MGNLSKDGNVIIEECPKVIRPVEERMEPLLEAVNASPVLSRKLFGVEFLAATTGECLITM 130 Query: 122 IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYR 181 +YHR LD++W A L + L+A +IGRA K K+ L R++V E L + + YR Sbjct: 131 LYHRPLDESWAREARALEEQLNA-----SIIGRARKQKVVLSREFVTEELEIDSKKYKYR 185 Query: 182 QIENSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHFDRVLAVEIA 240 E FTQPN +N M+ W G DLLE YCG GNF++ LA +F +VLA EI+ Sbjct: 186 HYEGGFTQPNPYVNTRMIAWARERAAEAGGGDLLEAYCGLGNFTIPLAENFSKVLATEIS 245 Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300 K S++AA+ N A N V N++ VR+SS+E T A+R+ER+FNRLK I+I Y FK + VDPP Sbjct: 246 KNSIKAAKENCALNGVENIEFVRLSSEEMTSALRKERQFNRLKGINIDEYDFKCVLVDPP 305 Query: 301 RSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360 R+GLD+AT ++ + +I+YISCNP++L RDL LS +H + A FDQFP+T H+E GV Sbjct: 306 RAGLDEATRELITTFENIIYISCNPETLARDLERLSQSHEVHAAASFDQFPHTEHLESGV 365 Query: 361 LLVRK 365 L R+ Sbjct: 366 FLQRR 370 >gi|152993415|ref|YP_001359136.1| tRNA (uracil-5-)-methyltransferase [Sulfurovum sp. NBC37-1] gi|172048743|sp|A6QBC0|TRMA_SULNB RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|151425276|dbj|BAF72779.1| tRNA (uracil-5-)-methyltransferase [Sulfurovum sp. NBC37-1] Length = 371 Score = 296 bits (757), Expect = 5e-78, Method: Compositional matrix adjust. Identities = 151/366 (41%), Positives = 222/366 (60%), Gaps = 7/366 (1%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHI 61 S L Y QQL K R+ +++ F L++F S YR RAEF IWH+ + + Sbjct: 11 SCALYNQNYTQQLQLKEQRVSELLSPFYTGELELFDSPDSRYRARAEFRIWHESERCDYA 70 Query: 62 MFDQQTKERMRIDYFMPGSLLINALMIEMMATIRL-EPLLRAKLFQIDYLTSQSDQAIVT 120 M + + K + I+ I M +++ I + +L+ +LF +++L + +D+ +VT Sbjct: 71 MGNIEKKGAVTIEECPKVIEPIEKRMWKLLEKINASQEVLKQRLFAVEFLATTTDECLVT 130 Query: 121 LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIY 180 ++YHR LD+AW E A L L+ R ++GR+ K K+ L ++V E L + G+ Y Sbjct: 131 MLYHRKLDEAWSEEAKMLERELNCR-----VMGRSRKQKVILSDEFVTETLEIDGKEFTY 185 Query: 181 RQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNFSLVLARHFDRVLAVEI 239 Q E+ FTQPN +NV M+EW + K + GD LE YCG GNF+L L+ +FD VLA EI Sbjct: 186 VQYESGFTQPNPAVNVKMIEWAIWQAKKVGYGDFLESYCGLGNFTLPLSHYFDNVLATEI 245 Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299 +K S+ AA N N V N+ R++S+E T+A+ REF+RLK ID+ SY F T+ VDP Sbjct: 246 SKRSIHAALQNCELNAVENITFARLASEEMTEALNGVREFSRLKGIDLKSYDFSTVLVDP 305 Query: 300 PRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359 PR+GLD+ T+ ++ +I+YISCNP++L RDL L THT+ ALFDQFP+T H+E G Sbjct: 306 PRAGLDEGTIELISNIDNIIYISCNPETLARDLETLIKTHTVMEAALFDQFPHTEHVESG 365 Query: 360 VLLVRK 365 V L +K Sbjct: 366 VFLQKK 371 >gi|315636702|ref|ZP_07891932.1| tRNA (uracil-5-)-methyltransferase [Arcobacter butzleri JV22] gi|315479017|gb|EFU69720.1| tRNA (uracil-5-)-methyltransferase [Arcobacter butzleri JV22] Length = 375 Score = 295 bits (755), Expect = 7e-78, Method: Compositional matrix adjust. Identities = 147/365 (40%), Positives = 227/365 (62%), Gaps = 9/365 (2%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIW-HDGDDLYH 60 S TL YE+QL K+ R ++ F + I +S ++R RAEF IW G++ Sbjct: 11 SCTLFDKTYEEQLNYKIQREKERFSNFTNIDFDIIKSNESNFRNRAEFRIWWEKGENNKE 70 Query: 61 IM---FDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQA 117 I+ + K ++I+ S I LM +++ ++ + L KLF +++L S + Sbjct: 71 ILSYAMNDFKKNILKINSCEMVSHHIKELMPKLIDELQNDLELSFKLFAVEFLGSSTKDM 130 Query: 118 IVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRT 177 +VTLIYH+ L+++W + A + L+ I++IGR+ K ++ L DY++E L ++ + Sbjct: 131 LVTLIYHKKLEESWIQKAKEIEKRLN-----IKIIGRSKKQRLVLTNDYINETLNISNQN 185 Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAV 237 + EN FTQPN +NV M+EWVL TK DL ELYCG GNF++ L+ F +VLA Sbjct: 186 FFFAYEENGFTQPNTNVNVQMIEWVLKNTKNSSKDLCELYCGGGNFTIPLSTKFRKVLAT 245 Query: 238 EIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFV 297 EI+K S+++A N + N + ++ +RMS+++F QA+ + R FNRLKDI++ Y F TIF+ Sbjct: 246 EISKTSIKSALRNCSLNKIESISFIRMSAEDFVQALNKVRAFNRLKDINLDDYEFDTIFM 305 Query: 298 DPPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHME 357 DPPRSGLD+ T + + + +I+YISCNP++L RDL L+ TH IE+ ALFDQF +T H+E Sbjct: 306 DPPRSGLDNTTRNLAKDFENIIYISCNPETLHRDLEELTKTHKIEKFALFDQFAFTNHIE 365 Query: 358 CGVLL 362 GV+L Sbjct: 366 SGVIL 370 >gi|88705120|ref|ZP_01102832.1| tRNA (Uracil-5-)-methyltransferase [Congregibacter litoralis KT71] gi|88700815|gb|EAQ97922.1| tRNA (Uracil-5-)-methyltransferase [Congregibacter litoralis KT71] Length = 373 Score = 293 bits (751), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 153/355 (43%), Positives = 218/355 (61%), Gaps = 8/355 (2%) Query: 8 DQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ-Q 66 + Y A+K + + ML ++P + F S YR+RAEF IWHDGDD+ ++MFD Sbjct: 9 ENYATLFAKKCSDVEKDMLTLRLPPAERFASPVESYRVRAEFRIWHDGDDIDYVMFDPGH 68 Query: 67 TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL 126 + + I F P I LM +++A ++ P+LR KLFQ +++ + + + ++TLIYHR Sbjct: 69 PRTPVVIKDFAPALAPIRTLMPQLLAFLKSRPVLRRKLFQAEFMATTTGELLLTLIYHRP 128 Query: 127 LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS 186 LDDAW + A L AR++ + L+GR+ K K + RD+V + TV GR YRQ E S Sbjct: 129 LDDAWEDEARAL-----AREFDVSLVGRSRKQKRIIGRDFVVDAFTVDGRCYRYRQYEQS 183 Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246 F QPNA IN ML W GDLLELYCGNGNF+L LA F V+A E++K A Sbjct: 184 FVQPNAPINEAMLTWAWQQGASCPGDLLELYCGNGNFTLPLASRFPAVIATELSKSGTRA 243 Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI--DIHSYRFKTIFVDPPRSGL 304 A NI N V+NV+++R+S++E ++AM REF RL + + Y +T+FVDPPR+GL Sbjct: 244 ALENIRDNGVDNVQVIRLSAEEVSEAMSGVREFRRLATLPKPLGDYDLRTVFVDPPRAGL 303 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359 D T+ V+ + ILY+SCNP +L ++ L+ +H + ALFDQFPYT H+E Sbjct: 304 DPGTLDCVRDFEAILYVSCNPKTLKSNIEALTDSHVVTHYALFDQFPYTPHIESA 358 >gi|149193955|ref|ZP_01871053.1| tRNA (uracil-5-)-methyltransferase [Caminibacter mediatlanticus TB-2] gi|149135908|gb|EDM24386.1| tRNA (uracil-5-)-methyltransferase [Caminibacter mediatlanticus TB-2] Length = 363 Score = 293 bits (749), Expect = 4e-77, Method: Compositional matrix adjust. Identities = 145/357 (40%), Positives = 218/357 (61%), Gaps = 15/357 (4%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69 YE+QL K D+L++M F++P +++ + H+R RAEF +WH+GD Y+ M ++ + Sbjct: 19 YEEQLKMKKDKLKEMFSKFEIPEIEVIYDKDEHFRARAEFRVWHEGDKTYYAMRKRKEEG 78 Query: 70 R--MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLL 127 R + I+ I LM ++M+ I LR KL+++ +L++ + IVTLIYHR + Sbjct: 79 RGVIPIEECKIVDKAIYELMPKLMSEIEKNQNLRLKLYEVHFLSNSKGEVIVTLIYHRKV 138 Query: 128 DDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSF 187 D++ E RL+D + I R K D++Y+ E L + G+T Y+ IEN+F Sbjct: 139 DESIAEDIKRLKDKFK----NVDFIVRKKGRKYIFDKNYLIEELEIKGKTYKYKIIENTF 194 Query: 188 TQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA 247 TQPN IN M+ WVL T ++GDL+ELYCGNGNF++ L+ +F +V+A EI S+EAA Sbjct: 195 TQPNREINKKMISWVLDNTSNLKGDLVELYCGNGNFTIPLSENFRKVVATEINPESIEAA 254 Query: 248 RYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307 YN N+ N+ + MS+ EF++ +++ FN SY K + +DPPR+GLD+ Sbjct: 255 TYNAEINNRKNISFLAMSAAEFSE-LKKTGFFN--------SYDLKNVLIDPPRAGLDEK 305 Query: 308 TVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 + V + +I+YISCNP++L RDL LS I+ A FDQFPYT HMECGV+L R Sbjct: 306 SRKFVNEFDNIIYISCNPETLKRDLETLSKNRKIKAFAFFDQFPYTNHMECGVVLER 362 >gi|296274443|ref|YP_003657074.1| tRNA (uracil-5-)-methyltransferase [Arcobacter nitrofigilis DSM 7299] gi|296098617|gb|ADG94567.1| tRNA (uracil-5-)-methyltransferase [Arcobacter nitrofigilis DSM 7299] Length = 373 Score = 291 bits (744), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 153/370 (41%), Positives = 223/370 (60%), Gaps = 16/370 (4%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDD---- 57 S TL YE+QLA K+ R +Q + +I RSE H+R RAEF W + DD Sbjct: 11 SCTLYHMNYEEQLAYKLSREKQRFQDITTMDFEIIRSEEEHFRNRAEFRFWKNYDDEKNP 70 Query: 58 -LYHIM--FDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQS 114 L + M FD K + +D S I+ LM +++ I +L K++ +++L S + Sbjct: 71 TLSYGMTSFD---KNILEVDKCSIVSKQIDELMPKLLDEISQSEILNYKIYSVEFLGSTT 127 Query: 115 DQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVA 174 + +VTLIYH+ LD W + A +++ L+ I++IGR+ K KI L D++ E L + Sbjct: 128 NDMLVTLIYHKKLDTTWEKVAKEVQERLN-----IKIIGRSRKQKIVLKEDFIKEELNIN 182 Query: 175 GRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRV 234 + E FTQPN +N+ M+EWVL + + DL ELYCG GNF++ L+ F++V Sbjct: 183 DNVFKFHYKEGGFTQPNTKVNIKMIEWVLNNIE-TKDDLCELYCGGGNFTIPLSTKFNKV 241 Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294 LA EI+K S+ +A N N++ N+ +RMS++EF +A+ REF RLKDI++ Y F T Sbjct: 242 LATEISKTSINSALLNCELNNITNIDFIRMSAEEFVEALNSVREFRRLKDINLSDYNFST 301 Query: 295 IFVDPPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTR 354 IFVDPPRSGLDD T +V+ Y I+YISCNP++L RDL L +H I +LFDQF Y+ Sbjct: 302 IFVDPPRSGLDDTTRELVKNYEQIIYISCNPETLHRDLKELIKSHQILNFSLFDQFSYSG 361 Query: 355 HMECGVLLVR 364 H+E GV+L + Sbjct: 362 HIETGVILKK 371 >gi|152985732|ref|YP_001350760.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas aeruginosa PA7] gi|166988118|sp|A6VCH5|TRMA_PSEA7 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|150960890|gb|ABR82915.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas aeruginosa PA7] Length = 363 Score = 291 bits (744), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 163/359 (45%), Positives = 223/359 (62%), Gaps = 9/359 (2%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHD--GDDLYHIMFDQQT 67 Y QL +K RL ++ F P ++F S HYR+RAEF +W + ++ ++ MF+Q Sbjct: 11 YAAQLEDKKARLAGLLAPFAAPAPEVFESPREHYRLRAEFRLWRETGNENRHYAMFEQGD 70 Query: 68 KER-MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL 126 K + I+ F S IN LM + EP L KLFQ+++LT+ + A++TL YHR Sbjct: 71 KHTPILIEDFPIASRRINELMPRLKDAW-AEPALGFKLFQVEFLTTLAGDALITLCYHRP 129 Query: 127 LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS 186 +D A + A + + L+GR+ +I + RDYV+E L VAGR YRQ E + Sbjct: 130 IDAA-----WQQAAEALAAELGVSLVGRSRGKRIVVGRDYVEEELLVAGRRFRYRQPEGA 184 Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246 FTQPN +N ML W A + DLLELYCGNGNF+L LA +VLA EI+K SV A Sbjct: 185 FTQPNGEVNQKMLGWAYEALGEREDDLLELYCGNGNFTLPLATRVRKVLATEISKSSVNA 244 Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306 A N+A N V+NV +VR+S++E TQA+ R F RL DID+ SY F ++FVDPPR+G+D Sbjct: 245 ALANLADNAVDNVSLVRLSAEELTQALNEVRPFRRLADIDLKSYAFGSVFVDPPRAGMDP 304 Query: 307 ATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 T + + + ILYISCNP++L ++++ L TH I R ALFDQFPYT HME GVLL R+ Sbjct: 305 DTCELTRRFERILYISCNPETLAQNIAQLHDTHRISRCALFDQFPYTHHMESGVLLERR 363 >gi|323144069|ref|ZP_08078712.1| tRNA (uracil-5-)-methyltransferase [Succinatimonas hippei YIT 12066] gi|322416145|gb|EFY06836.1| tRNA (uracil-5-)-methyltransferase [Succinatimonas hippei YIT 12066] Length = 378 Score = 287 bits (735), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 155/366 (42%), Positives = 226/366 (61%), Gaps = 9/366 (2%) Query: 9 QYEQQLAEKVDRLRQMMLA--FQVPNLQIFRSEPIHYRMRAEFHIWH-DGDDLYHIMFDQ 65 Y+ L EK D + ++ A +P QIF S P +YRMRAEF I+H + + M+D+ Sbjct: 13 NYQNYLNEKTDHVLNLLKAKGITLPPPQIFPSIPSNYRMRAEFAIFHTETTGFEYCMYDK 72 Query: 66 Q--TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIY 123 + K+R+ I+YF SL IN M + + ++ +LF+ D+L + I+TL Y Sbjct: 73 EGGKKKRVFINYFDGVSLAINKAMSLLKEYALTDLQIKNRLFEADFLCNLQGDVIITLNY 132 Query: 124 HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQI 183 H+ LD+A+ +LR LH + +++ RA K KI D + E L V G+ + QI Sbjct: 133 HKKLDEAFAASLEKLRSFLHEKSLNAEIVARARKQKITCKDDTLLECLKVNGKNVYLYQI 192 Query: 184 ENSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 E +FTQPNA MLE+ L ++ +Q DLLELYCG+G F+ LA + +VLA E+A+ Sbjct: 193 EGTFTQPNAVTCEKMLEFALNCSEDMQNTDLLELYCGSGTFTATLAPCYRKVLATEVARV 252 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL--KDIDIHSYRFKTIFVDPP 300 + A N+ N+++NVK+VR+S+ E TQA+ RER FNRL KD+D++ Y FKT+ +DPP Sbjct: 253 PTQNALRNLEKNNIDNVKLVRLSAVEVTQALNRERTFNRLQQKDVDLNEYDFKTLLIDPP 312 Query: 301 RSGL-DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359 R+GL D+A + + ++YISC P+S DL L+ TH IE+LA FDQFPYTRH+E G Sbjct: 313 RAGLQDEAALKFTARFDRVIYISCGPESFASDLQFLTKTHRIEKLAFFDQFPYTRHLESG 372 Query: 360 VLLVRK 365 LLVR+ Sbjct: 373 ALLVRR 378 >gi|255075201|ref|XP_002501275.1| predicted protein [Micromonas sp. RCC299] gi|226516539|gb|ACO62533.1| predicted protein [Micromonas sp. RCC299] Length = 459 Score = 287 bits (735), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 153/393 (38%), Positives = 220/393 (55%), Gaps = 40/393 (10%) Query: 8 DQYEQQLAEKVDRLR------------------QMMLAFQVPNLQIFRSEPIHYRMRAEF 49 D Y ++L K++R R + + +P ++ S ++RMRAEF Sbjct: 70 DTYREELDVKIERARSHFAAAPAPAPTPEVPHPKPLEEIHLPPTEVHESARSNFRMRAEF 129 Query: 50 HIWHDGDDLYHIMFDQQ-TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQID 108 +WHDGD Y MFD K + + F GS IN LM + I ++R KLFQ++ Sbjct: 130 RVWHDGDRSYLAMFDSDDPKTPIEVPSFPMGSEKINELMPAFIEEIGRSEVIRRKLFQVN 189 Query: 109 YLTSQSDQAIVTLIYHRLLD-DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYV 167 +LT+ A+++++YH+ + D W A ++R ++ + +IGR+ K K+ L DYV Sbjct: 190 FLTTMKGDALISMLYHKPVKTDEWELEAEKMR-----QRLGVSIIGRSRKQKVVLGNDYV 244 Query: 168 DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWV--------------LAATKGIQGDL 213 E + V GR L Y+Q+E FTQPNAGI+ MLEW AA DL Sbjct: 245 MEEIEVDGRVLTYKQLEGGFTQPNAGISAKMLEWARSAAVSDSADAVGEAAAPARRNDDL 304 Query: 214 LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273 LELYCGNGNF++ +A F VLA E++K SV AA+ N AN NV R+SS+E T A+ Sbjct: 305 LELYCGNGNFTIAMAPMFRAVLATEVSKVSVAAAKLNADANGAGNVAFARLSSEELTLAL 364 Query: 274 RREREFNRLKDID-IHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYISCNPDSLCRDL 332 + ++F RL D+ + SY +T+ VDPPR+G+ + V + I+YISCNP++L D+ Sbjct: 365 DQGKQFARLDDVPPLESYDLRTVLVDPPRAGMGEEVSTFVSRFDRIVYISCNPETLAADV 424 Query: 333 SILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 L TH + R A FDQFPYT H+ECG LL+ K Sbjct: 425 RTLRDTHEVARFAAFDQFPYTPHLECGALLIAK 457 >gi|268679645|ref|YP_003304076.1| tRNA (uracil-5-)-methyltransferase [Sulfurospirillum deleyianum DSM 6946] gi|268617676|gb|ACZ12041.1| tRNA (uracil-5-)-methyltransferase [Sulfurospirillum deleyianum DSM 6946] Length = 367 Score = 285 bits (728), Expect = 9e-75, Method: Compositional matrix adjust. Identities = 145/363 (39%), Positives = 220/363 (60%), Gaps = 7/363 (1%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHI 61 S TL Y+ Q+A K ++ + V F S HYR RAEF IW +G+ +++ Sbjct: 11 SCTLYALDYQAQVAHKKTAIKTLFEPLHVKEFTFFESACEHYRGRAEFRIWKEGEKIHYA 70 Query: 62 MFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTL 121 M K + ID I+ LM +++ I +LR ++F I++L+S S+ +VTL Sbjct: 71 MGAMDKKRAVCIDACPKVEERIDTLMPKLLKAIEGVDVLRERIFAIEFLSS-SEHLLVTL 129 Query: 122 IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYR 181 IYH+ LD AW + A +L + + I +IGR+ K L +D+++ER + ++ Y Sbjct: 130 IYHKPLDKAWEKEAKKLEEV-----FNIFVIGRSRGIKKVLSQDFIEERFALEAKSYRYH 184 Query: 182 QIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241 IE F+QPN +N M+ WVL+ + + DLLELYCG GNF+L +A F++VLA EI+K Sbjct: 185 IIEGGFSQPNRTMNQTMIGWVLSHLESCE-DLLELYCGYGNFTLPMAGKFNKVLATEISK 243 Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301 S+ +A N N V+N+ +R+S++E T A+ +ER FNRL +++ Y F +FVDPPR Sbjct: 244 TSIASALKNCELNDVSNITFLRLSAEELTSALNKERTFNRLAGMNLDDYAFSHVFVDPPR 303 Query: 302 SGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVL 361 SG+D+ ++ + + +I+YISCNP +L RDL +L +TIE ALFDQFP T H+E GV+ Sbjct: 304 SGMDEKSLAFISRFENIIYISCNPQTLKRDLEVLCQNYTIEHFALFDQFPNTEHLESGVI 363 Query: 362 LVR 364 L R Sbjct: 364 LKR 366 >gi|224373183|ref|YP_002607555.1| tRNA (uracil-5-)-methyltransferase [Nautilia profundicola AmH] gi|262827704|sp|B9LA97|TRMA_NAUPA RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|223589187|gb|ACM92923.1| tRNA (uracil-5-)-methyltransferase [Nautilia profundicola AmH] Length = 365 Score = 272 bits (696), Expect = 5e-71, Method: Compositional matrix adjust. Identities = 132/357 (36%), Positives = 213/357 (59%), Gaps = 13/357 (3%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69 Y++QL K ++L++M F +P +++ H+R RAEF +WH+GD Y+ M ++ Sbjct: 19 YDEQLKMKSEKLKEMFSEFDMPEIEVVHGSDEHFRARAEFRVWHEGDKSYYAMRKRKEDG 78 Query: 70 R--MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLL 127 R + I+ I +M ++ I LR KL++ID+L++ + I+TLIYH+ + Sbjct: 79 RGVIPIEECKIVDKAIYDIMTPLLKEIEKNDNLRFKLYEIDFLSNSKGELIITLIYHKKV 138 Query: 128 DDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSF 187 D++ E +L++ + ++ GR K D++Y+ E L + +T Y+ IEN+F Sbjct: 139 DESIAEDIKKLKEKFKNADFIVRKKGR----KYVFDKNYLIEELNINSKTYKYKIIENTF 194 Query: 188 TQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA 247 +QPN +N M+EW + ++ ++GDL+ELYCGNGNF++ L+ F++V+A EI+K S+EAA Sbjct: 195 SQPNRQMNQKMIEWAMRNSEDLKGDLVELYCGNGNFTIPLSERFNKVIATEISKESIEAA 254 Query: 248 RYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307 YN N +N+ + MS+ EF++ + I Y K I +DPPR+GLDD Sbjct: 255 TYNAEINARDNITFLAMSAAEFSKLYKDRSPL-------ITKYDLKNILIDPPRAGLDDK 307 Query: 308 TVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 + V + +I+YISCNP++L RDL L+ I+ A FDQFPYT H ECGV+L + Sbjct: 308 SREFVNEFDNIIYISCNPETLQRDLKTLAKGREIKAFAFFDQFPYTNHAECGVILKK 364 >gi|303286133|ref|XP_003062356.1| predicted protein [Micromonas pusilla CCMP1545] gi|226455873|gb|EEH53175.1| predicted protein [Micromonas pusilla CCMP1545] Length = 469 Score = 267 bits (683), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 149/368 (40%), Positives = 215/368 (58%), Gaps = 33/368 (8%) Query: 26 LAFQVPN-LQIFRSEPIH-YRMRAEFHIWHDGDDLYHIMFDQQ-TKERMRIDYFMPGSLL 82 +A +P+ +++F S H +RMRAEF +WH GD + MFD + K + I+ F GS Sbjct: 106 IAVPLPDEIEVFESPKKHHFRMRAEFRVWHAGDKSFMAMFDNEDPKTPVEIETFPMGSER 165 Query: 83 INALMIEMMATIRLEPLLRAKLFQIDYLT-SQSDQAIVTLIYHRLLDDAWRECAIRLRDA 141 IN+LM E++ I+ EP LR KLFQ+++LT S +D A+V+++YHR LD AW A R Sbjct: 166 INSLMKEVLREIKDEPALRRKLFQVNFLTTSGTDDALVSMLYHRPLDAAWEAAAEEAR-- 223 Query: 142 LHARKYQIQLIGRANKTK---ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHM 198 ++ ++ +IGR+ K K I L +V E LTV G Y+Q+E FTQPN+G M Sbjct: 224 ---QRMKVSVIGRSRKQKARLIVLGNPFVMETLTVDGEKFTYKQLEGGFTQPNSGTCEKM 280 Query: 199 LEWV----------LAATKGIQG--------DLLELYCGNGNFSLVLARHFDRVLAVEIA 240 LEW + G G D LELYCGNGNF++ LA + VLA E++ Sbjct: 281 LEWARDVSVDDARAPGSGSGPAGARPRRRDDDFLELYCGNGNFTVALAPLYLNVLATEMS 340 Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI---DIHSYRFKTIFV 297 K SV AA N N N K+VR+S++E + +++ R+ + D+ +Y +T+ V Sbjct: 341 KVSVAAAVENFETNGTTNAKVVRLSAEELVLVLDSGKKYERMTNAGLDDLSAYDLRTLLV 400 Query: 298 DPPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHME 357 DPPR+G+ + + I+YISCNP +L D IL+ TH I+R A+FDQFPYT H+E Sbjct: 401 DPPRAGMGEEVSKFASRFDRIIYISCNPKTLAEDCRILAETHEIKRFAVFDQFPYTPHLE 460 Query: 358 CGVLLVRK 365 G LLV++ Sbjct: 461 SGALLVKR 468 >gi|242310595|ref|ZP_04809750.1| tRNA (uracil-5-)-methyltransferase [Helicobacter pullorum MIT 98-5489] gi|239522993|gb|EEQ62859.1| tRNA (uracil-5-)-methyltransferase [Helicobacter pullorum MIT 98-5489] Length = 369 Score = 267 bits (682), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 139/360 (38%), Positives = 215/360 (59%), Gaps = 19/360 (5%) Query: 11 EQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKER 70 E L K+ R ML FQ N ++F S+ + +R R E I+H + + + M K R Sbjct: 17 EYSLESKIARA-SAMLGFQ--NFEVFGSQEVSFRARCELGIYHKENKIIYTM----RKGR 69 Query: 71 MRIDYFMP---GSLLINAL--MIEMMATIRLEPLL---RAKLFQIDYLTSQSDQAIVTLI 122 F+P +L++ L ++++ + + R KLF I+ L++Q D ++TLI Sbjct: 70 Q----FVPIQNCPILVDNLQAFLQVLKEVLNDDFFGDFREKLFAIEALSTQMDTILLTLI 125 Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182 YH+ L+D W E A ++ L R +++++GR+ KI +D+D+V E L V + YR Sbjct: 126 YHKKLNDKWLEIARVFKEVLEKRGIKLEVVGRSRGVKIVVDKDFVIEELKVGKKGYFYRY 185 Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 E +F+QPN +N ML+W + + K DLLE+YCG GNF++ + F +VLA EI+K Sbjct: 186 DEGAFSQPNPKVNEKMLKWAMDSLKRSDEDLLEMYCGCGNFTIPFSEKFRKVLATEISKT 245 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302 S+ AA++ N NN+K VR++++E +A+ REF RL+ I + Y F ++FVDPPR+ Sbjct: 246 SIRAAKFACEKNQRNNIKFVRLNAQECIEALEGVREFRRLEGIRLQDYCFSSVFVDPPRA 305 Query: 303 GLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362 GL + +Q + +ILYISCNP +L +DL IL TH I ++A FDQFP+T H+E GVLL Sbjct: 306 GLGEEVSRFLQRFQNILYISCNPSTLAKDLEILKQTHKISKVAFFDQFPHTPHLESGVLL 365 >gi|34558377|ref|NP_908192.1| tRNA (uracil-5-)-methyltransferase [Wolinella succinogenes DSM 1740] gi|81653300|sp|Q7M7T6|TRMA_WOLSU RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|34484096|emb|CAE11092.1| TRNA (URACIL-5-)-METHYLTRANSFERASE [Wolinella succinogenes] Length = 370 Score = 265 bits (676), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 138/365 (37%), Positives = 214/365 (58%), Gaps = 12/365 (3%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIW-HDGDDLYH 60 G L YE+Q K R+++ + ++ S P +R RAEF ++ ++ L + Sbjct: 10 GGCALALPYEEQWKLKESEFRELLPLSKDTPTDLYPSAPHSFRARAEFRLYRNESGRLSY 69 Query: 61 IMFDQQTKERMRIDY---FMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQA 117 M + +K+ + I +P I ALM ++ + + +L KLF +++L+ S + Sbjct: 70 AMSQKGSKQPLPIQSCPILLPS---IQALMPSLLEALESDEILTQKLFGVEFLSGLSQEV 126 Query: 118 IVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRT 177 +V+L+YH+ LD AW E R L + LIGR+ KI L ++ E LT+ + Sbjct: 127 LVSLLYHKRLDHAWEE---RALGLLSSLPTLSSLIGRSKGQKIVLGESFITETLTIDSKP 183 Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAV 237 + E SFTQPN +N M+EW+++A QGDLLELYCG GNF+L L+ + ++LA Sbjct: 184 WRFLHYEGSFTQPNPKVNEKMIEWIISAPP--QGDLLELYCGAGNFTLPLSSRYAKILAT 241 Query: 238 EIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFV 297 E++K S+ AA+ N N V ++ VR++++E A+ EREF RL+++D+ SY F+ +FV Sbjct: 242 EVSKTSIHAAKQNCELNSVRHISFVRLNAQETQSALEGEREFYRLRELDLPSYDFQAVFV 301 Query: 298 DPPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHME 357 DPPR+GL ++ + ILYISCNP +L DL +L +H +ER ALFDQFPYT H+E Sbjct: 302 DPPRAGLGAEVASFLRRFDQILYISCNPKTLQSDLEVLQLSHDVERFALFDQFPYTPHLE 361 Query: 358 CGVLL 362 GV+L Sbjct: 362 SGVIL 366 >gi|57167831|ref|ZP_00366971.1| tRNA (uracil-5-)-methyltransferase [Campylobacter coli RM2228] gi|57020953|gb|EAL57617.1| tRNA (uracil-5-)-methyltransferase [Campylobacter coli RM2228] Length = 362 Score = 264 bits (674), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 136/351 (38%), Positives = 212/351 (60%), Gaps = 10/351 (2%) Query: 13 QLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMR 72 +L EK +++ F N ++F S+ HYR RAE +HD D++Y+ MF + K+++ Sbjct: 11 KLEEKASFIKEFFKDFYQGNFELFSSKDKHYRTRAELSFYHDKDEIYYAMF--ENKKKII 68 Query: 73 IDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWR 132 I+ I A M +++ IR L+ KLF +++L ++++ + TL+YH+ ++ + Sbjct: 69 IESLEFADEKITAFMPKLLKQIRNNTNLKEKLFGVEFLATKNELS-TTLLYHKNIELIYN 127 Query: 133 ECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNA 192 + L L A LI R+ K+ ++ + + L + GR + Y + F QPN Sbjct: 128 DLN-NLSLELDA-----NLIARSKGKKLVFKKENLRQELDIQGRKIFYEFNNDCFIQPNT 181 Query: 193 GINVHMLEWVLAATKGIQ-GDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251 IN M+ WV K + DLLELYCG GNF+L LA F+ VLA EI+K ++ A N Sbjct: 182 SINEKMITWVCENLKTQERKDLLELYCGYGNFTLALAIFFNNVLATEISKSNINFALLNC 241 Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311 N+++N+ R+SS+E +QA+++EREF RLKDID+ ++ F I VDPPR+GLD + + + Sbjct: 242 KINNISNIHFTRLSSEELSQALKKEREFFRLKDIDLDNFNFSHILVDPPRAGLDKSVIDL 301 Query: 312 VQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362 ++ Y +I+YISCNP SL +L L+ TH +E+ ALFDQF T H+ECGVLL Sbjct: 302 IKNYENIIYISCNPISLKENLKELALTHKVEKFALFDQFVNTPHLECGVLL 352 >gi|305432144|ref|ZP_07401310.1| tRNA (uracil-5-)-methyltransferase [Campylobacter coli JV20] gi|304444809|gb|EFM37456.1| tRNA (uracil-5-)-methyltransferase [Campylobacter coli JV20] Length = 362 Score = 263 bits (673), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 135/351 (38%), Positives = 212/351 (60%), Gaps = 10/351 (2%) Query: 13 QLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMR 72 +L EK +++ F N ++F S+ HYR RAE +HD D++Y+ MF + K+++ Sbjct: 11 KLEEKASFIKEFFKDFYQGNFELFSSKDKHYRTRAELSFYHDKDEIYYAMF--ENKKKII 68 Query: 73 IDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWR 132 I+ I A M +++ IR L+ KLF +++L ++++ + TL+YH+ ++ + Sbjct: 69 IESLEFADEKITAFMPKLLKQIRNNTNLKEKLFGVEFLATKNELS-TTLLYHKNIELIYN 127 Query: 133 ECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNA 192 + L L A LI R+ K+ ++ + + L + GR + Y + F QPN Sbjct: 128 DLN-NLSLELDA-----NLIARSKGKKLVFKKENLRQELDIQGRKIFYEFNNDCFIQPNT 181 Query: 193 GINVHMLEWVLAATKGIQ-GDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251 IN M+ WV K + DLLELYCG GNF+L LA F+ VLA EI+K ++ A N Sbjct: 182 SINEKMITWVCENLKTQERKDLLELYCGYGNFTLALAIFFNNVLATEISKSNINFALLNC 241 Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311 N+++N+ R+SS+E +QA+++EREF RLKDID+ ++ F I VDPPR+GLD + + + Sbjct: 242 KINNISNIHFTRLSSEELSQALKKEREFFRLKDIDLDNFNFSHILVDPPRAGLDKSVIDL 301 Query: 312 VQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362 ++ Y +I+YISCNP SL +L L+ TH +E+ ALFDQF T H+ECG+LL Sbjct: 302 IKNYENIIYISCNPISLKENLKELALTHKVEKFALFDQFVNTPHLECGILL 352 >gi|253827633|ref|ZP_04870518.1| tRNA (uracil-5-)-methyltransferase [Helicobacter canadensis MIT 98-5491] gi|253511039|gb|EES89698.1| tRNA (uracil-5-)-methyltransferase [Helicobacter canadensis MIT 98-5491] Length = 370 Score = 261 bits (667), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 143/367 (38%), Positives = 214/367 (58%), Gaps = 25/367 (6%) Query: 11 EQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKER 70 E L KVD +Q++ + I +R R E I+ D + + M ++ K+ Sbjct: 17 ECSLESKVDYAKQLL---GINQCDIVSLRQDSFRARCELGIFFKDDKINYAM--RKGKQF 71 Query: 71 MRID----------YFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVT 120 + I+ F+P +L L E R KLF I+ L++Q+D+ ++T Sbjct: 72 VCIENCCNLLESLQKFLP--VLKKKLNQEFFKD------FRQKLFAIEVLSTQNDEILLT 123 Query: 121 LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIY 180 LIYH+ L++ W E A L+ AL ++++++IGR+ K+ +++DYV E+L + G+ Y Sbjct: 124 LIYHKKLNETWLENAKELKKALQ--EFRVEIIGRSKGVKLIVEKDYVVEKLEIDGKKYYY 181 Query: 181 RQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240 R E +FTQPN IN M+EWVL +GDLLE+YCG GNF++ L++ F +VLA EI+ Sbjct: 182 RYDEGAFTQPNPKINEKMIEWVLQNISQSKGDLLEMYCGCGNFTIPLSQKFRKVLATEIS 241 Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300 K S+ AA++ N NN+ VR+S +E +A+ R+FNRL+ I++ Y F I VDPP Sbjct: 242 KVSIRAAKFACQRNGCNNITFVRLSGQECIEAIEGIRKFNRLEQINLEEYDFSMILVDPP 301 Query: 301 RSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360 R GL + +Q + ILYISCNP SL +DL ILS TH I + A FDQFP+T H+E G+ Sbjct: 302 RGGLGEEVCRFLQNFSSILYISCNPLSLAKDLKILSQTHRIVKAAFFDQFPHTSHLETGI 361 Query: 361 LLVRKPS 367 LL + S Sbjct: 362 LLQKVDS 368 >gi|237752331|ref|ZP_04582811.1| tRNA (uracil-5-)-methyltransferase [Helicobacter winghamensis ATCC BAA-430] gi|229375820|gb|EEO25911.1| tRNA (uracil-5-)-methyltransferase [Helicobacter winghamensis ATCC BAA-430] Length = 367 Score = 261 bits (667), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 129/338 (38%), Positives = 210/338 (62%), Gaps = 13/338 (3%) Query: 32 NLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKER----MRIDYFMPGSLLINALM 87 + ++F+SE H+R RAE I+HD ++++ M + KER + +P I + Sbjct: 34 DFEVFKSEQSHFRARAELGIYHDNREIFYTM--RGEKERFVKIVNCQNLLPN---IQKTL 88 Query: 88 IEMMATIRLEPL--LRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHA- 144 ++A + + + +LF ++ L +Q++ ++TLIYHR L+++W + A +L+ L Sbjct: 89 PVLLAILNSKDFNAFKERLFSLEILANQNNALLLTLIYHRKLEESWIQEAKKLQLKLEKF 148 Query: 145 RKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA 204 + +++GR+ K+ L++DY+ + L + G+ YR E +F+QPNA IN M+ WVL Sbjct: 149 LGFHFEIVGRSRGVKLVLEKDYLMQTLEILGKQFCYRYNEGAFSQPNATINQQMITWVLE 208 Query: 205 ATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRM 264 K GDLLE+YCG GNF++ L+ F +VLA E++K S+ A ++ N + N+ VR+ Sbjct: 209 HLKE-GGDLLEMYCGCGNFTIPLSFCFGKVLATEVSKTSINALKFACETNQIPNIYSVRL 267 Query: 265 SSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYISCN 324 S E +A+ +REFNRLK ID++++ FK++FVDPPR GL ++ + I+YISCN Sbjct: 268 SGAECIEALNGKREFNRLKHIDLNTFNFKSVFVDPPRCGLGLEVCAFLKRFKQIIYISCN 327 Query: 325 PDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362 P +L +DL IL TH I+ A FDQF +T+H+ECGV+L Sbjct: 328 PVTLAQDLDILKQTHKIKHAAFFDQFAHTKHLECGVIL 365 >gi|153952276|ref|YP_001398252.1| tRNA (uracil-5-)-methyltransferase [Campylobacter jejuni subsp. doylei 269.97] gi|166988116|sp|A7H422|TRMA_CAMJD RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|152939722|gb|ABS44463.1| tRNA (uracil-5-)-methyltransferase [Campylobacter jejuni subsp. doylei 269.97] Length = 357 Score = 259 bits (662), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 136/353 (38%), Positives = 209/353 (59%), Gaps = 10/353 (2%) Query: 14 LAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRI 73 L EK +++ F + ++F S+ HYR RAE +H+ D L++ MFD ++K++ I Sbjct: 12 LDEKHSFIKKYFKEFYTKDFKLFTSKDKHYRTRAELSFYHENDTLFYAMFDPKSKKKYII 71 Query: 74 DYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRE 133 +Y I A M +++ +R + L+ KLF +++LT++ + ++ TL+YH+ ++D Sbjct: 72 EYLDFADEKICAFMPKLLEYLRQDDKLKEKLFGVEFLTTKQELSL-TLLYHKNIEDIKSN 130 Query: 134 CAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAG 193 L + LH I LI R+ K+ + + + L + GR + Y + F QPN Sbjct: 131 LE-NLSNNLH-----INLIARSKGKKLIFKTENLRQTLNIQGREIFYEFNNDCFIQPNTT 184 Query: 194 INVHMLEWVLAATKGIQG--DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251 IN M+ WV IQ DLLELYCG GNF+L LA+ F +VLA EI+K S+ A N Sbjct: 185 INEKMITWVCEIL-SIQKRMDLLELYCGYGNFTLALAQFFFKVLATEISKSSINFALKNC 243 Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311 N+ N+ R+SS+E + A+++EREF RLKDI + + F + VDPPR+GLD + + + Sbjct: 244 KLNNTTNIHFARLSSEELSLAIKKEREFFRLKDIRLDDFNFSHVLVDPPRAGLDKSVIDL 303 Query: 312 VQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 ++ Y +I+YISCNP +L +L LS TH +E ALFDQF T H+ECGV L + Sbjct: 304 IKKYENIIYISCNPITLKENLKELSLTHRVENFALFDQFVNTPHLECGVFLSK 356 >gi|323451355|gb|EGB07232.1| hypothetical protein AURANDRAFT_53938 [Aureococcus anophagefferens] Length = 473 Score = 255 bits (652), Expect = 7e-66, Method: Compositional matrix adjust. Identities = 142/378 (37%), Positives = 213/378 (56%), Gaps = 23/378 (6%) Query: 10 YEQQLAEKVDRLRQMMLAF-QVPNLQIFRSEP-IHYRMRAEFHIWHD----GDDLYHIMF 63 Y+ QLA KV R+R ++ ++P P H+R R+ F +WH+ G + IM+ Sbjct: 17 YDAQLAAKVARVRALLGEVAELPETTTVVPSPKSHFRQRSNFRVWHEPEATGLGVSFIMY 76 Query: 64 DQQT--KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTL 121 + KE +R+ F G NALM ++A ++ P+LR K+ + + ++ A+V Sbjct: 77 SPSSSDKEPLRVGDFARGDAKTNALMGPVLAALKTTPVLRDKVIECRFHSTLRGGAMVLF 136 Query: 122 IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKI-----CLDRDYVDERLTVAGR 176 Y+R +D A A + +IGR+ + +I C R V+E L + Sbjct: 137 AYNRPIDADAAWKAAAEALAAQLGP-DVVVIGRSRRVQIAVGGACPGRAQVEETLEIPCE 195 Query: 177 T---LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG----DLLELYCGNGNFSLVLAR 229 L Q+E F+QPN + ML W +AATK +G DLLELYCGNGNF++ L+R Sbjct: 196 PPLRLELVQLEGEFSQPNGAVCERMLAWAMAATKPAEGAAPRDLLELYCGNGNFTIPLSR 255 Query: 230 HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDI 287 HF +VLA E+ KP+ AR N A N +NV + R+S+ E +A+RR+REF RLK+ +D+ Sbjct: 256 HFRKVLATELTKPNAAVARENAAKNGRSNVVVARLSAAEVAEALRRDREFARLKELGVDL 315 Query: 288 HSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALF 347 +Y T+FVDPPR GLD T+ + + ++Y+SC PD+L +L L+ TH + A+F Sbjct: 316 DAYDLGTLFVDPPRCGLDAPTLKLAHGFETVVYMSCGPDTLAENLHALNATHVVADFAVF 375 Query: 348 DQFPYTRHMECGVLLVRK 365 DQFPYT H E GV+L R+ Sbjct: 376 DQFPYTDHCEVGVVLKRR 393 >gi|157165225|ref|YP_001466961.1| tRNA (uracil-5-)-methyltransferase [Campylobacter concisus 13826] gi|226705971|sp|A7ZDV3|TRMA_CAMC1 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|112800933|gb|EAT98277.1| tRNA (uracil-5-)-methyltransferase [Campylobacter concisus 13826] Length = 367 Score = 255 bits (651), Expect = 9e-66, Method: Compositional matrix adjust. Identities = 132/360 (36%), Positives = 207/360 (57%), Gaps = 7/360 (1%) Query: 6 LIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ 65 L Y +Q++ K D ++Q F +F S P HYR RAEF IWH+G L + M Sbjct: 14 LFTSYSEQISFKTDLIKQNFSHFYDGKFDLFSSSPKHYRTRAEFGIWHEGSKLSYTMHAS 73 Query: 66 QTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHR 125 + +++ ID I+ LM ++ +++ + +LR KLF ++++ +S +VTL+YH+ Sbjct: 74 EKGKKVFIDECPKVCEQISHLMPRLLESLQDDEILRTKLFGVEFIACKSG-TLVTLLYHK 132 Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIEN 185 LD + E A+++ A K + ++ R+ K+ + + L V G+ + EN Sbjct: 133 KLDSEF-EAAMKIL----ASKLDVMILARSRGQKLLSGELNLVDELNVDGQIYKFSLSEN 187 Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 +F QPN +N M+ W + DLLELYCG+GNF++ L+ F VLA EI+K S+ Sbjct: 188 AFIQPNKAVNEKMIAWAKECVQS-GADLLELYCGHGNFTIPLSFKFKNVLATEISKSSIA 246 Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD 305 A N N V N+K +RM + E A REFNRLKDI + + F + VDPPR+GL Sbjct: 247 NALKNCELNGVENIKFLRMDADELMSAFAGVREFNRLKDIKLSDFNFSHVLVDPPRAGLS 306 Query: 306 DATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 ++ + ++ + +I+YISCNP++L +L+ L+ +H + + ALFDQF T H+ECGVLL K Sbjct: 307 ESVINFIRNFKNIIYISCNPETLKENLNELTKSHKVIKFALFDQFANTHHIECGVLLEAK 366 >gi|121613439|ref|YP_001000516.1| tRNA (uracil-5-)-methyltransferase [Campylobacter jejuni subsp. jejuni 81-176] gi|134035056|sp|A1VZH5|TRMA_CAMJJ RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|87249351|gb|EAQ72311.1| tRNA (uracil-5-)-methyltransferase [Campylobacter jejuni subsp. jejuni 81-176] Length = 357 Score = 254 bits (649), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 133/352 (37%), Positives = 206/352 (58%), Gaps = 8/352 (2%) Query: 14 LAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRI 73 L EK +++ F + ++F S+ HYR RAE +H+ D L++ MFD ++K++ I Sbjct: 12 LDEKHSFIKKYFKEFYTKDFKLFTSKDKHYRTRAELSFYHENDTLFYAMFDPKSKKKYII 71 Query: 74 DYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRE 133 +Y I A M +++ +R + L+ KLF +++LT++ + + VTL+YH+ ++D Sbjct: 72 EYLDFADEKICAFMPKLLEYLRQDDKLKEKLFGVEFLTTKQELS-VTLLYHKNIEDIKSN 130 Query: 134 CAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAG 193 L + LH I LI R+ K+ + + + L + R + Y + F QPN Sbjct: 131 LE-NLSNNLH-----INLIARSKGKKLIFKTENLRQTLNIQDRKIFYEFNNDCFIQPNTA 184 Query: 194 INVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIA 252 IN M+ WV + DLLELYCG GNF+L LA F +VLA EI+K ++ A N Sbjct: 185 INEKMITWVCEILNTQKRMDLLELYCGYGNFTLALAPFFFKVLATEISKSNINFALKNCE 244 Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312 N+ N+ R+SS+E + A+++EREF RLKDI + + F + VDPPR+GLD + + ++ Sbjct: 245 LNNTTNIHFARLSSEELSLAIKKEREFFRLKDIRLDDFNFSHVLVDPPRAGLDKSVIDLI 304 Query: 313 QAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 + Y +I+YISCNP +L +L LS TH +E ALFDQF T H+ECGV L + Sbjct: 305 KKYENIIYISCNPITLKENLKELSLTHRVEEFALFDQFVNTPHLECGVFLSK 356 >gi|148926533|ref|ZP_01810215.1| tRNA (uracil-5-)-methyltransferase [Campylobacter jejuni subsp. jejuni CG8486] gi|145845227|gb|EDK22321.1| tRNA (uracil-5-)-methyltransferase [Campylobacter jejuni subsp. jejuni CG8486] Length = 380 Score = 254 bits (648), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 133/352 (37%), Positives = 205/352 (58%), Gaps = 8/352 (2%) Query: 14 LAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRI 73 L EK +++ F + ++F S+ HYR RAE +H+ D L++ MFD + K++ I Sbjct: 35 LDEKHSFIKKYFKEFYTKDFKLFASKDKHYRTRAELSFYHENDTLFYAMFDPKNKKKYII 94 Query: 74 DYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRE 133 +Y I A M +++ +R + L+ KLF +++LT++ + + VTL+YH+ ++D Sbjct: 95 EYLDFADEKICAFMPKLLEYLRQDNKLKEKLFGVEFLTTKQELS-VTLLYHKNIEDIKSN 153 Query: 134 CAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAG 193 L + LH I LI R+ K+ + + + L + GR + Y + F QPN Sbjct: 154 LE-NLSNNLH-----INLIARSKGKKLIFKTENLRQTLNIQGRKIFYEFNNDCFIQPNTT 207 Query: 194 INVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIA 252 IN M+ WV + DLLELYCG GNF+L LA F ++LA EI+K ++ A N Sbjct: 208 INEKMITWVCEILNTQKRMDLLELYCGYGNFTLALAPFFFKILATEISKSNINFALKNCE 267 Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312 N+ N+ R+SS+E + A+++EREF RLKDI + + F + VDPPR+GLD + + ++ Sbjct: 268 LNNTTNIHFARLSSEELSLAIKKEREFFRLKDIRLDDFNFSHVLVDPPRAGLDKSVIDLI 327 Query: 313 QAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 + Y +I+YISCNP +L +L LS TH E ALFDQF T H+ECGV L + Sbjct: 328 KKYENIIYISCNPITLKENLKELSLTHRAEEFALFDQFVNTPHLECGVFLSK 379 >gi|157415098|ref|YP_001482354.1| tRNA (uracil-5-)-methyltransferase [Campylobacter jejuni subsp. jejuni 81116] gi|172047119|sp|A8FLP0|TRMA_CAMJ8 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|157386062|gb|ABV52377.1| tRNA (uracil-5-)-methyltransferase [Campylobacter jejuni subsp. jejuni 81116] gi|307747739|gb|ADN91009.1| tRNA (uracil-5-)-methyltransferase [Campylobacter jejuni subsp. jejuni M1] gi|315931160|gb|EFV10133.1| tRNA (uracil-5-)-methyltransferase [Campylobacter jejuni subsp. jejuni 327] Length = 357 Score = 253 bits (647), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 133/352 (37%), Positives = 206/352 (58%), Gaps = 8/352 (2%) Query: 14 LAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRI 73 L EK +++ F + ++F S+ HYR RAE +H+ D L++ MFD ++K++ I Sbjct: 12 LDEKHSFIKKYFKEFYTKDFKLFASKDKHYRTRAELSFYHENDTLFYAMFDPKSKKKYII 71 Query: 74 DYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRE 133 +Y I A M +++ +R + L+ KLF +++LT++ + +I TL+YH+ ++D Sbjct: 72 EYLDFADEKICAFMPKLLEYLRQDNKLKEKLFGVEFLTTKQELSI-TLLYHKNIEDIKSN 130 Query: 134 CAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAG 193 L + LH I LI R+ K+ + + + L + R + Y + F QPN Sbjct: 131 LE-NLSNILH-----INLIARSKGKKLIFKTENLRQTLNIQDRKIFYEFNNDCFIQPNTT 184 Query: 194 INVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIA 252 IN M+ WV + DLLELYCG GNF+L LA F +VLA EI+K ++ A N Sbjct: 185 INEKMITWVCEILNTQKRMDLLELYCGYGNFTLALAPFFFKVLATEISKSNINFALKNCK 244 Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312 N+ N+ R+SS+E + A+++EREF RLKDI + + F + VDPPR+GLD + + ++ Sbjct: 245 LNNTTNIHFARLSSEELSLAIKKEREFFRLKDIRLDDFNFSHVLVDPPRAGLDKSVIDLI 304 Query: 313 QAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 + Y +I+YISCNP +L +L LS TH +E ALFDQF T H+ECGV L + Sbjct: 305 KKYENIIYISCNPITLKENLKELSLTHRVEEFALFDQFVNTPHLECGVFLSK 356 >gi|283957181|ref|ZP_06374645.1| tRNA (uracil-5-)-methyltransferase [Campylobacter jejuni subsp. jejuni 1336] gi|283791357|gb|EFC30162.1| tRNA (uracil-5-)-methyltransferase [Campylobacter jejuni subsp. jejuni 1336] Length = 357 Score = 253 bits (647), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 133/354 (37%), Positives = 207/354 (58%), Gaps = 12/354 (3%) Query: 14 LAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRI 73 L EK +++ F ++F S+ HYR R E +H+ D L++ MFD ++K++ I Sbjct: 12 LDEKHSFIKKYFKEFYTKEFKLFASKDKHYRTRVELSFYHENDTLFYAMFDPKSKKKYII 71 Query: 74 DYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRE 133 +Y I A M +++ +R + L+ KLF +++LT++ + +I TL+YH+ ++D Sbjct: 72 EYLDFADEKICAFMPKLLECLRQDSKLKEKLFGVEFLTTKQELSI-TLLYHKNIEDIKSN 130 Query: 134 CAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAG 193 L + LH I LI R+ K+ + + + L + R + Y + F QPN Sbjct: 131 LE-NLSNILH-----INLIARSKGKKLIFKTENLRQTLNIQDRKIFYEFNNDCFIQPNTA 184 Query: 194 INVHMLEWV---LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN 250 IN M+ WV L+ K + DLLELYCG GNF+L LA F ++LA EI+K ++ A N Sbjct: 185 INEKMITWVCEILSTQKRM--DLLELYCGYGNFTLALAPFFFKILATEISKSNINFALKN 242 Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310 N+ N+ R+SS+E + A+++EREF RLKDI + + F + VDPPR+GLD + + Sbjct: 243 CELNNTTNIHFARLSSEELSLAIKKEREFFRLKDIRLDDFNFSHVLVDPPRAGLDKSVID 302 Query: 311 MVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 +++ Y +I+YISCNP +L +L LS TH +E ALFDQF T H+ECGV L + Sbjct: 303 LIKKYENIIYISCNPITLKENLKELSLTHRVEEFALFDQFANTPHLECGVFLSK 356 >gi|205356330|ref|ZP_03223095.1| tRNA (uracil-5-)-methyltransferase [Campylobacter jejuni subsp. jejuni CG8421] gi|205345715|gb|EDZ32353.1| tRNA (uracil-5-)-methyltransferase [Campylobacter jejuni subsp. jejuni CG8421] Length = 357 Score = 252 bits (644), Expect = 6e-65, Method: Compositional matrix adjust. Identities = 133/352 (37%), Positives = 205/352 (58%), Gaps = 8/352 (2%) Query: 14 LAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRI 73 L EK +++ F + ++F S+ HYR RAE +H+ D L++ MFD + K++ I Sbjct: 12 LDEKHSFIKKYFKEFYTKDFKLFASKDKHYRTRAELSFYHENDTLFYAMFDPKNKKKYII 71 Query: 74 DYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRE 133 +Y I A M +++ +R + L+ KLF +++LT++ + + VTL+YH+ ++D Sbjct: 72 EYLDFADEKICAFMPKLLEYLRQDNKLKEKLFGVEFLTTKQELS-VTLLYHKNIEDIKSN 130 Query: 134 CAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAG 193 L + LH I LI R+ K+ + + + L + GR + Y + F QPN Sbjct: 131 LE-NLSNNLH-----INLIARSKGKKLIFKTENLRQTLNIQGRKIFYEFNNDCFIQPNTT 184 Query: 194 INVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIA 252 IN M+ WV + DLLELYCG GNF+L LA F ++LA EI+K ++ A N Sbjct: 185 INEKMITWVCEILNTQKRMDLLELYCGYGNFTLALAPFFFKILATEISKSNINFALKNCE 244 Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312 N+ N+ R+SS+E + A+++EREF RLKDI + + F + VDPPR+GLD + + ++ Sbjct: 245 LNNTINIHFARLSSEELSLAIKKEREFFRLKDIRLDDFNFSHVLVDPPRAGLDKSVIDLI 304 Query: 313 QAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 + Y +I+YISCNP +L +L LS TH E ALFDQF T H+ECGV L + Sbjct: 305 KKYENIIYISCNPITLKENLKELSLTHRAEEFALFDQFVNTPHLECGVFLSK 356 >gi|86150214|ref|ZP_01068441.1| tRNA (uracil-5-)-methyltransferase [Campylobacter jejuni subsp. jejuni CF93-6] gi|88597584|ref|ZP_01100818.1| tRNA (uracil-5-)-methyltransferase [Campylobacter jejuni subsp. jejuni 84-25] gi|85839330|gb|EAQ56592.1| tRNA (uracil-5-)-methyltransferase [Campylobacter jejuni subsp. jejuni CF93-6] gi|88190176|gb|EAQ94151.1| tRNA (uracil-5-)-methyltransferase [Campylobacter jejuni subsp. jejuni 84-25] gi|284926076|gb|ADC28428.1| tRNA (uracil-5-)-methyltransferase [Campylobacter jejuni subsp. jejuni IA3902] gi|315927708|gb|EFV07037.1| tRNA-uracil-5-methyltransferase [Campylobacter jejuni subsp. jejuni DFVF1099] gi|315929085|gb|EFV08317.1| tRNA (uracil-5-)-methyltransferase [Campylobacter jejuni subsp. jejuni 305] Length = 357 Score = 252 bits (644), Expect = 6e-65, Method: Compositional matrix adjust. Identities = 132/352 (37%), Positives = 205/352 (58%), Gaps = 8/352 (2%) Query: 14 LAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRI 73 L EK +++ F + ++F S+ HYR RAE +H+ D L++ MFD ++K++ I Sbjct: 12 LDEKHSFIKKYFKEFYTKDFKLFASKDKHYRTRAELSFYHENDTLFYAMFDPKSKKKYII 71 Query: 74 DYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRE 133 +Y I A M ++ +R + L+ KLF +++LT++ + +I TL+YH+ ++D Sbjct: 72 EYLDFADEKICAFMPRLLEYLRQDNKLKEKLFGVEFLTTKQELSI-TLLYHKNIEDIKSN 130 Query: 134 CAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAG 193 L + LH I LI R+ K+ + + + L + R + Y + F QPN Sbjct: 131 LE-NLSNILH-----INLIARSKGKKLIFKTENLRQTLNIQDRKIFYEFNNDCFIQPNTA 184 Query: 194 INVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIA 252 IN M+ WV + DLLELYCG GNF+L LA F ++LA EI+K ++ A N Sbjct: 185 INEKMITWVCEILNTQKRMDLLELYCGYGNFTLALAPFFFKILATEISKSNINFALKNCE 244 Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312 N+ N+ R+SS+E + A+++EREF RLKDI + + F + VDPPR+GLD + + ++ Sbjct: 245 LNNTTNIHFARLSSEELSLAIKKEREFFRLKDIRLDDFNFSHVLVDPPRAGLDKSVIDLI 304 Query: 313 QAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 + Y +I+YISCNP +L +L LS TH +E ALFDQF T H+ECGV L + Sbjct: 305 KKYGNIIYISCNPITLKENLKELSLTHRVEEFALFDQFVNTPHLECGVFLSK 356 >gi|86152063|ref|ZP_01070275.1| tRNA (uracil-5-)-methyltransferase [Campylobacter jejuni subsp. jejuni 260.94] gi|86153337|ref|ZP_01071541.1| tRNA (uracil-5-)-methyltransferase [Campylobacter jejuni subsp. jejuni HB93-13] gi|315124348|ref|YP_004066352.1| tRNA (uracil-5-)-methyltransferase [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|85840848|gb|EAQ58098.1| tRNA (uracil-5-)-methyltransferase [Campylobacter jejuni subsp. jejuni 260.94] gi|85843063|gb|EAQ60274.1| tRNA (uracil-5-)-methyltransferase [Campylobacter jejuni subsp. jejuni HB93-13] gi|315018070|gb|ADT66163.1| tRNA (uracil-5-)-methyltransferase [Campylobacter jejuni subsp. jejuni ICDCCJ07001] Length = 357 Score = 252 bits (643), Expect = 7e-65, Method: Compositional matrix adjust. Identities = 132/352 (37%), Positives = 205/352 (58%), Gaps = 8/352 (2%) Query: 14 LAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRI 73 L EK +++ F + ++F S+ HYR RAE +H+ D L++ MFD ++K++ I Sbjct: 12 LDEKHSFIKKYFKEFYTKDFKLFTSKDKHYRTRAELSFYHENDTLFYAMFDPKSKKKYII 71 Query: 74 DYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRE 133 +Y I A M +++ + + L+ KLF +++LT++ + + VTL+YH+ ++D Sbjct: 72 EYLDFADEKICAFMPKLLEYLHQDNKLKEKLFGVEFLTTKQELS-VTLLYHKNIEDIKSN 130 Query: 134 CAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAG 193 L + LH I LI R+ K+ + + + L + R + Y + F QPN Sbjct: 131 LE-NLSNNLH-----INLIARSKGKKLIFKTENLRQTLNIQDRKIFYEFNNDCFIQPNTA 184 Query: 194 INVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIA 252 IN M+ WV + DLLELYCG GNF+L LA F +VLA EI+K ++ A N Sbjct: 185 INEKMITWVCEILNTQKRMDLLELYCGYGNFTLALAPFFFKVLATEISKSNINFALKNCE 244 Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312 N+ N+ R+SS+E + A+++EREF RLKDI + + F + VDPPR+GLD + + ++ Sbjct: 245 LNNTTNIHFARLSSEELSLAIKKEREFFRLKDIRLDDFNFSHVLVDPPRAGLDKSVIDLI 304 Query: 313 QAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 + Y +I+YISCNP +L +L LS TH +E ALFDQF T H+ECGV L + Sbjct: 305 KKYENIIYISCNPITLKENLKELSLTHRVEEFALFDQFVNTPHLECGVFLSK 356 >gi|218562459|ref|YP_002344238.1| tRNA (uracil-5-)-methyltransferase [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|20178174|sp|Q9PP92|TRMA_CAMJE RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|112360165|emb|CAL34959.1| tRNA (uracil-5-)-methyltransferase [Campylobacter jejuni subsp. jejuni NCTC 11168] Length = 357 Score = 252 bits (643), Expect = 7e-65, Method: Compositional matrix adjust. Identities = 132/352 (37%), Positives = 205/352 (58%), Gaps = 8/352 (2%) Query: 14 LAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRI 73 L EK +++ F + ++F S+ HYR RAE +H+ D L++ MFD ++K++ I Sbjct: 12 LDEKHSFIKKYFKEFYTKDFKLFASKDKHYRTRAELSFYHENDTLFYAMFDPKSKKKYII 71 Query: 74 DYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRE 133 +Y I A M ++ +R + L+ KLF +++LT++ + +I TL+YH+ ++D Sbjct: 72 EYLDFADEKICAFMPRLLEYLRQDNKLKEKLFGVEFLTTKQELSI-TLLYHKNIEDIKSN 130 Query: 134 CAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAG 193 L + LH I LI R+ K+ + + + L + R + Y + F QPN Sbjct: 131 LE-NLSNILH-----INLIARSKGKKLIFKTENLRQTLNIQDRKIFYEFNNDCFIQPNTA 184 Query: 194 INVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIA 252 IN M+ WV + DLLELYCG GNF+L LA F ++LA EI+K ++ A N Sbjct: 185 INEKMITWVCEILNTQKRMDLLELYCGYGNFTLALAPFFFKILATEISKSNINFALKNCE 244 Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312 N+ N+ R+SS+E + A+++EREF RLKDI + + F + VDPPR+GLD + + ++ Sbjct: 245 LNNTTNIHFARLSSEELSLAIKKEREFFRLKDIRLDDFNFSHVLVDPPRAGLDKSVIDLI 304 Query: 313 QAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 + Y +I+YISCNP +L +L LS TH +E ALFDQF T H+ECGV L + Sbjct: 305 KKYGNIIYISCNPMTLKENLKELSLTHRVEEFALFDQFVNTPHLECGVFLSK 356 >gi|255322717|ref|ZP_05363861.1| tRNA (uracil-5-)-methyltransferase [Campylobacter showae RM3277] gi|255300278|gb|EET79551.1| tRNA (uracil-5-)-methyltransferase [Campylobacter showae RM3277] Length = 377 Score = 252 bits (643), Expect = 8e-65, Method: Compositional matrix adjust. Identities = 140/370 (37%), Positives = 213/370 (57%), Gaps = 14/370 (3%) Query: 3 GTLLIDQ-YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHD----GDD 57 G+ +D YE+Q+ K D +R+ F + F S+ YR RAEF IWHD D Sbjct: 13 GSCTLDMPYEEQVKFKTDFIRREFEPFYSGEFEFFASQSAAYRTRAEFGIWHDIWHSAVD 72 Query: 58 LYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQA 117 L + M +TK R+ ID + I LM ++ + +L+ +LF ++++ S Sbjct: 73 LAYTMHGAKTK-RIMIDECPKVAAPIANLMPRLLEALAKNQILKERLFGAEFISCASG-I 130 Query: 118 IVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRT 177 + TL+YH+ L +A + L AL ++ + RA K+ + + L + G+ Sbjct: 131 LATLLYHKRLGEAEQSEIESL--ALKFADLRVTIAARAKGQKLLSGELNLQDSLNIGGKI 188 Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ--GDLLELYCGNGNFSLVLARHFDRVL 235 + + +F QPN +N M+ W A + ++ DLLELYCG+GNF++ ++ F RVL Sbjct: 189 YKFTFGDGAFIQPNTAVNEKMIAW---AKRCVERGADLLELYCGHGNFTVPMSEKFKRVL 245 Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295 A EI+K S+ A N N VNN++ +RMS++E A RREREFNRL+++DI SY F + Sbjct: 246 ATEISKSSIANALKNCELNGVNNIEFLRMSAEELMSAFRREREFNRLRELDIFSYDFSHV 305 Query: 296 FVDPPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRH 355 VDPPR+GLD++ + ++ Y +I+YISC+P SL RDL+ L+ TH + A+FDQF T H Sbjct: 306 LVDPPRAGLDESVINFIKNYENIIYISCSPQSLKRDLTQLAATHEAVKFAVFDQFANTTH 365 Query: 356 MECGVLLVRK 365 +ECGVLL K Sbjct: 366 IECGVLLKGK 375 >gi|283954401|ref|ZP_06371921.1| LOW QUALITY PROTEIN: tRNA (uracil-5-)-methyltransferase [Campylobacter jejuni subsp. jejuni 414] gi|283794018|gb|EFC32767.1| LOW QUALITY PROTEIN: tRNA (uracil-5-)-methyltransferase [Campylobacter jejuni subsp. jejuni 414] Length = 354 Score = 249 bits (637), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 133/354 (37%), Positives = 206/354 (58%), Gaps = 12/354 (3%) Query: 14 LAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRI 73 L EK ++ F + ++F S+ HYR R E +H+ D L++ MFD + K++ I Sbjct: 9 LDEKHSFVKTYFKEFYTKDFKLFSSKAKHYRTRVELSFYHENDTLFYAMFDSKNKKKYII 68 Query: 74 DYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRE 133 + I M +++ +R + L+ KLF +++LT++ + +I TL+YH+ ++D + Sbjct: 69 KHLDFADEKICTFMPKLLEYLRQDDRLKEKLFGVEFLTTKQELSI-TLLYHKNIEDIKQN 127 Query: 134 CAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAG 193 L + LH I LI R+ K+ + + + L + R + Y + F QPN Sbjct: 128 LE-NLSNILH-----INLIARSKGKKLVFKTENLRQTLNIQDREIFYEFNNDCFIQPNTA 181 Query: 194 INVHMLEWV---LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN 250 IN M+ WV L+ K I DLLELYCG GNF+L LA+ F +VLA EI+K ++ A N Sbjct: 182 INEKMITWVYEILSTQKRI--DLLELYCGYGNFTLALAQLFFKVLATEISKNNINFALKN 239 Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310 N+ N+ R+SS+E + A+++ER+F RL+DI + + F + VDPPR+GLD + + Sbjct: 240 CKLNNTTNIHFARLSSEELSLAIKKERDFFRLRDIQLDDFNFSHVLVDPPRAGLDKSVID 299 Query: 311 MVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 +V+ Y +I+YISCNP +L +L LS TH IE ALFDQF T H+ECGV L + Sbjct: 300 LVKKYENIIYISCNPITLKENLKELSLTHKIENFALFDQFVNTPHLECGVFLSK 353 >gi|223041073|ref|ZP_03611330.1| tRNA (uracil-5-)-methyltransferase [Campylobacter rectus RM3267] gi|222877686|gb|EEF12810.1| tRNA (uracil-5-)-methyltransferase [Campylobacter rectus RM3267] Length = 374 Score = 246 bits (629), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 136/365 (37%), Positives = 206/365 (56%), Gaps = 8/365 (2%) Query: 3 GTLLIDQ-YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHI 61 G+ +D YE+Q+ K +R+ F + F S+ YR RAEF IW +G++L + Sbjct: 13 GSCTLDAPYEEQVEFKKGFIRREFEPFYSGEFEFFASQKAGYRTRAEFGIWREGEELSYT 72 Query: 62 MFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTL 121 M + K R+ ID + I LM ++ + +L+ KLF ++++ S + TL Sbjct: 73 MHGAKAK-RVFIDECPKVAAPIANLMPRLLGALVKNQILKEKLFGAEFISCASG-ILATL 130 Query: 122 IYHRLLDDAWR-ECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIY 180 +YH+ L A + E R+ + R + + RA K+ + +RL + + + Sbjct: 131 LYHKHLGKAEQGEIESLAREFVGHR---VTIAARAKGQKLLSGELNLQDRLNIGDKIYKF 187 Query: 181 RQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240 + +F QPN +N M+ W + DLLELYCG+GNF++ +A F RVLA EI+ Sbjct: 188 TFGDGAFIQPNTAVNEKMIAWAKGCVE-RGADLLELYCGHGNFTVAMAEKFKRVLATEIS 246 Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300 K S+ A N N VNN+K +RMS++E A REREFNRL+++DI SY F + VDPP Sbjct: 247 KSSIANALKNCELNGVNNIKFLRMSAEELISAFGREREFNRLRELDIFSYDFSHVLVDPP 306 Query: 301 RSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360 R+GLD + + ++ Y +I+YISC+P SL RD++ L TH + A+FDQF T H+ECGV Sbjct: 307 RAGLDASVINFIKNYENIVYISCSPQSLKRDMAQLDATHEAVKFAVFDQFANTAHIECGV 366 Query: 361 LLVRK 365 LL K Sbjct: 367 LLRSK 371 >gi|57237672|ref|YP_178920.1| tRNA (uracil-5-)-methyltransferase [Campylobacter jejuni RM1221] gi|81557510|sp|Q5HUW5|TRMA_CAMJR RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|57166476|gb|AAW35255.1| tRNA (uracil-5-)-methyltransferase [Campylobacter jejuni RM1221] gi|315058281|gb|ADT72610.1| tRNA (uracil-5-)-methyltransferase [Campylobacter jejuni subsp. jejuni S3] Length = 357 Score = 243 bits (621), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 133/352 (37%), Positives = 204/352 (57%), Gaps = 8/352 (2%) Query: 14 LAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRI 73 L EK +++ F + ++F S+ HYR RAE +H+ D L++ MFD + K++ I Sbjct: 12 LDEKHSFIKKYFKEFYTKDFKLFASKDKHYRTRAELSFYHENDTLFYAMFDPKNKKKYII 71 Query: 74 DYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRE 133 Y I M +++ +R + L+ KLF +++LT++ + + VTL+YH+ ++D Sbjct: 72 KYLDFADEKICTFMPKLLEYLRQDNKLKEKLFGVEFLTTKQELS-VTLLYHKNIEDIKSN 130 Query: 134 CAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAG 193 L + LH I LI R+ K+ + + + L + GR + Y + F QPN Sbjct: 131 LE-NLSNILH-----INLIARSKGKKLIFKTENLRQTLNIQGRKIFYEFNNDCFIQPNTT 184 Query: 194 INVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIA 252 IN M+ WV + DLLELYCG GNF+L LA F +VLA EI+K ++ A N Sbjct: 185 INEKMITWVCEILNTQKRMDLLELYCGYGNFTLALAPFFFKVLATEISKSNINFALKNCE 244 Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312 N+ N+ R+SS+E + A+++EREF RLKDI + + F + VDPPR+GLD + + ++ Sbjct: 245 LNNTTNIHFARLSSEELSLAIKKEREFFRLKDIRLDDFNFSHVLVDPPRAGLDKSVIDLI 304 Query: 313 QAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 + Y +I+YISCNP +L +L LS TH +E ALFDQF T H+ECGV L + Sbjct: 305 KKYENIIYISCNPITLKENLKELSLTHRVEEFALFDQFVNTPHLECGVFLSK 356 >gi|154175098|ref|YP_001408132.1| tRNA (uracil-5-)-methyltransferase [Campylobacter curvus 525.92] gi|262827638|sp|A7GY40|TRMA_CAMC5 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|112803124|gb|EAU00468.1| tRNA (uracil-5-)-methyltransferase [Campylobacter curvus 525.92] Length = 364 Score = 236 bits (602), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 124/358 (34%), Positives = 204/358 (56%), Gaps = 13/358 (3%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69 YE QL K + + F L+IF S+P YR RAEF IWH+ D++Y+ M ++K Sbjct: 18 YEDQLNFKANFIADKFREFFDGELEIFSSKPQRYRSRAEFGIWHENDEIYYTMHGSRSK- 76 Query: 70 RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL--L 127 ++I + I ALM ++ + L++K+F ++++++ A++ L + RL L Sbjct: 77 FIKISECLKVDESIAALMPRLLEELGTSNELKSKIFGVEFISTSELCAVILLYHKRLEGL 136 Query: 128 DDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSF 187 + A+ E A RL ++++ R+ KI D + + + G +++F Sbjct: 137 EAAFSELAKRL---------GVKIVARSRGQKISSDERELCDSFEINGLRYALNFGDSAF 187 Query: 188 TQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA 247 QPN +N M+ W + A + + D+LE+YCG+GNF++ LA F RVLA EI+K S+ A Sbjct: 188 IQPNKCVNEKMISWAMNAVQNAE-DMLEMYCGHGNFTIPLAGKFRRVLATEISKSSIANA 246 Query: 248 RYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307 N N + N+K +RMS++E A ER F RL+ +++ + F + VDPPR+GL+ + Sbjct: 247 LKNCERNGIGNIKFLRMSAEELMSAFSGERGFRRLEGVNLADFTFSHVLVDPPRAGLEAS 306 Query: 308 TVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 + ++ Y +I+YISCNP +L +L LS TH + A+FDQF T H+ECGV+L ++ Sbjct: 307 VINFIKNYENIVYISCNPQTLYENLKELSLTHKATKFAMFDQFANTNHIECGVVLKKR 364 >gi|222823969|ref|YP_002575543.1| tRNA (uracil-5-)-methyltransferase [Campylobacter lari RM2100] gi|262827649|sp|B9KCK3|TRMA_CAMLR RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|222539191|gb|ACM64292.1| tRNA (uracil-5-)-methyltransferase [Campylobacter lari RM2100] Length = 346 Score = 234 bits (598), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 127/349 (36%), Positives = 210/349 (60%), Gaps = 13/349 (3%) Query: 16 EKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWH-DGDDLYHIMFDQQTKERMRID 74 EK+ + + + +Q F+S YR RAEF I+H + ++ + M+ + K+++ I Sbjct: 5 EKIALNKALFSSLYDKEIQCFKSPLKAYRTRAEFCIYHHENGEISYAMY--ENKKKIPIK 62 Query: 75 YFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWREC 134 F I A M ++ L L+ KLF +++L ++ D +I TL+YH+ ++ ++ Sbjct: 63 NFEIADEKIQAYMPILLDN--LNENLKHKLFGVEFLATKIDLSI-TLLYHKNIESITQD- 118 Query: 135 AIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGI 194 L++ ++K ++LI R+ K+ + + + + L + + + Y + F QPN I Sbjct: 119 ---LQEL--SKKLNLKLIARSRGKKLVFNGENLKQILNIKNKEIFYEFNNDCFIQPNTTI 173 Query: 195 NVHMLEWVL-AATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAA 253 N M+EWV+ K + DLLELYCG GNF++ LA++F+++LA EI+K ++E A N Sbjct: 174 NEKMIEWVIDLLEKEERKDLLELYCGYGNFTIALAKYFNKILATEISKKNIEFALKNCDL 233 Query: 254 NHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ 313 N + N+ R+SS+E +QA+++EREFNRLK ID+ + + VDPPR+GLD + + +++ Sbjct: 234 NSIKNISFTRLSSEELSQALKKEREFNRLKGIDLDGFNISHVLVDPPRAGLDVSVIELIK 293 Query: 314 AYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362 Y +I+YISCNP +L +L ILS +H I LA FDQF T H+ECGV L Sbjct: 294 KYENIIYISCNPITLRENLEILSQSHEILNLAFFDQFANTSHLECGVHL 342 >gi|315638470|ref|ZP_07893647.1| tRNA (uracil-5-)-methyltransferase [Campylobacter upsaliensis JV21] gi|315481461|gb|EFU72088.1| tRNA (uracil-5-)-methyltransferase [Campylobacter upsaliensis JV21] Length = 354 Score = 234 bits (596), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 128/358 (35%), Positives = 210/358 (58%), Gaps = 15/358 (4%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWH-DGDDLYHIMFDQQT 67 +EQ++ E +++ F ++F S H+R R E +H + ++++ MFD + Sbjct: 4 NFEQKILEA----KELFKPFYKGEFELFSSPTSHFRTRVELSFFHSENGEIFYAMFDGRK 59 Query: 68 KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLL 127 K + F+ + + LM +++ + + L+ KLF +++L S+ + + VTL+YH+ + Sbjct: 60 KYIVENLDFVDEKICL--LMPKLLKALNDDNTLKNKLFGVEFLASKKELS-VTLLYHKDI 116 Query: 128 DDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSF 187 ++ A AR + LI R+ K+ ++ + + L + G + Y + F Sbjct: 117 S------TLKENLANLARNLNLNLIARSKGKKLVFGKENLRQVLDIKGEAIHYEFDNDCF 170 Query: 188 TQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246 QPN IN M+EWVL + G + DLLELYCG GNF+L LA F ++LA E++K ++ Sbjct: 171 IQPNTYINEKMIEWVLKQISTGEKNDLLELYCGYGNFTLALASSFKQILATELSKKNIAY 230 Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306 A N N+ N+ R+SS+E ++A+++EREF RLKDID+ S+ F I +DPPR+GL++ Sbjct: 231 ALKNCTLNNATNIHFARLSSEELSKALKKEREFFRLKDIDLDSFHFSHILLDPPRAGLEE 290 Query: 307 ATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 + + + Q Y HI+YISCNP SL +L+ L+ THTI ALFDQF T H+E GV+L + Sbjct: 291 SVIELAQNYHHIIYISCNPTSLKENLTKLTKTHTITNFALFDQFALTPHLESGVILKK 348 >gi|32034047|ref|ZP_00134291.1| COG2265: SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] Length = 229 Score = 233 bits (595), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 113/227 (49%), Positives = 154/227 (67%), Gaps = 5/227 (2%) Query: 4 TLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDD-----L 58 L I+QY LAEK L ++ F P L++F SE H+RMRAEF +WHD ++ L Sbjct: 2 NLPIEQYADLLAEKAKNLTALLAPFNPPELEVFESETGHFRMRAEFRVWHDTNEVGENEL 61 Query: 59 YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAI 118 YHIMFDQ+TK+R ++ F + LIN +M ++A I+ LL KLFQ+DYL++ S + Sbjct: 62 YHIMFDQETKQRYCVEQFPIANHLINKMMSSLLAEIKGNELLTRKLFQVDYLSTLSGEIA 121 Query: 119 VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTL 178 V+++YH+ L++ W+ A L+ L + +++Q+IGRA K KI LDRDYV+E L V GR L Sbjct: 122 VSMLYHKKLNEEWQAEAAALKARLEHQGFKVQIIGRATKQKIALDRDYVEEVLPVDGRNL 181 Query: 179 IYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSL 225 IYRQ+ENSFTQPNA +N+ MLEW + T+ GDLLELYCGNG F L Sbjct: 182 IYRQVENSFTQPNAKMNIKMLEWARSCTRHSSGDLLELYCGNGIFRL 228 >gi|323448927|gb|EGB04820.1| hypothetical protein AURANDRAFT_12344 [Aureococcus anophagefferens] Length = 343 Score = 233 bits (595), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 136/348 (39%), Positives = 204/348 (58%), Gaps = 18/348 (5%) Query: 31 PNLQIFRSEPIHYRMRAEFHIWHDGDDLYH-------IMFDQQTKERMRIDY--FMPGSL 81 P ++F SE +RMRA F +W +G L H +M+++ + R ++ F GS Sbjct: 1 PAAEVFESERSGFRMRASFQVWREGS-LDHGNQTRHLVMYERGDEARNPVECLDFPMGSD 59 Query: 82 LINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDA 141 + +L+ + A ++ E L K+ LT+ + A+++L Y+R L A A Sbjct: 60 RLRSLLPPLTAALQGE-TLGYKINDARLLTTLAGDALLSLTYNRPLAGDD---AWDAAAA 115 Query: 142 LHARKYQIQLIGRANKTKICLDRDYVDERLTVAGR-TLIYRQIENSFTQPNAGINVHMLE 200 A + ++++GR+ K K + D V E L V GR T Y Q E +FTQPNA + ML Sbjct: 116 DFAAAHDVKVVGRSRKYKTAVGADEVREVLDVPGRGTCAYWQTEGAFTQPNANVCRSMLG 175 Query: 201 WVLAATKG-IQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259 W +AAT GDL ELYCGNG F++ LA +F RV+A E++K SV AR N+AAN +N Sbjct: 176 WAVAATANRGHGDLCELYCGNGCFTVALAPNFRRVVATELSKASVALARRNLAANGNDNA 235 Query: 260 KIVRMSSKEFTQAMRREREFNRLKDID--IHSYRFKTIFVDPPRSGLDDATVGMVQAYPH 317 ++ ++S++EF +A R F RL D + T+FVDPPR+GLD V + + + Sbjct: 236 RVAKLSAEEFVEAFDGARTFGRLLDAGETLAFDALDTLFVDPPRAGLDATCVELARRFAT 295 Query: 318 ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 ++Y+SCNP++L RD+++L+ TH + RLA FDQFPYT H+E GV+L RK Sbjct: 296 VVYVSCNPETLARDVALLAATHDVSRLAAFDQFPYTHHLEAGVVLERK 343 >gi|118475420|ref|YP_892144.1| tRNA (uracil-5-)-methyltransferase [Campylobacter fetus subsp. fetus 82-40] gi|134035055|sp|A0RPL1|TRMA_CAMFF RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|118414646|gb|ABK83066.1| tRNA (uracil-5-)-methyltransferase [Campylobacter fetus subsp. fetus 82-40] Length = 367 Score = 232 bits (592), Expect = 6e-59, Method: Compositional matrix adjust. Identities = 125/363 (34%), Positives = 214/363 (58%), Gaps = 10/363 (2%) Query: 3 GTLLIDQ-YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHI 61 G+ +D Y +Q+ K + +++ F + FRS +R RAEF ++HD + L + Sbjct: 13 GSCTLDMPYSEQIDFKKNFIKEHFKDFHNGEIIFFRSPISKFRSRAEFGLYHDDNSLSYT 72 Query: 62 MFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTL 121 M + ++ID I+ +M ++ ++ L+AKLF ++++T++ D+ ++ L Sbjct: 73 M-RRADGGYLKIDKCSIVDEKISVIMPVLLDLLKENQNLKAKLFGVEFITTR-DEILIIL 130 Query: 122 IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYR 181 +YH+ +E K ++ LI R+ K+ ++E+L + G++ Y Sbjct: 131 LYHKDASTIIQELTWL------QSKLKVGLIARSKGKKLVFGSSSLNEKLFINGKSYHYV 184 Query: 182 QIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241 + +F QPN IN +M+ WVL T + DLLELYCG+GNF++ L+ F++VLA EI+K Sbjct: 185 FGDAAFIQPNRNINENMISWVLDHTTDCK-DLLELYCGHGNFTIPLSFKFNKVLATEISK 243 Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301 S+ +A N N V+N+K R+S++E +A +R+F RL+DID+ SY F I VDPPR Sbjct: 244 ASINSALKNCELNGVDNIKFTRLSAEELMEAFLFKRDFRRLQDIDLRSYEFSHILVDPPR 303 Query: 302 SGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVL 361 +G D + + ++ Y +I+YISCNP +L +L +L TH++++ A+FDQF +T H+EC V+ Sbjct: 304 AGCDKSVLDFIRNYENIIYISCNPLTLKENLKLLCKTHSVDKFAIFDQFVHTNHIECAVV 363 Query: 362 LVR 364 L + Sbjct: 364 LKK 366 >gi|57242357|ref|ZP_00370296.1| tRNA (uracil-5-)-methyltransferase [Campylobacter upsaliensis RM3195] gi|57017037|gb|EAL53819.1| tRNA (uracil-5-)-methyltransferase [Campylobacter upsaliensis RM3195] Length = 354 Score = 231 bits (588), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 127/358 (35%), Positives = 210/358 (58%), Gaps = 15/358 (4%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGD-DLYHIMFDQQT 67 +EQ++ E +++ F ++F S H+R R E +H D ++++ MF+ + Sbjct: 4 NFEQKILEA----KELFKPFYKGEFELFSSPTSHFRTRVELSFFHSEDGEIFYAMFNGRK 59 Query: 68 KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLL 127 K + F+ + + LM +++ + + L+ KLF +++L S+ + + VTL+YH+ + Sbjct: 60 KYIVENLDFVDEKICL--LMPKLLKALNDDNTLKNKLFGVEFLASKKELS-VTLLYHKDI 116 Query: 128 DDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSF 187 ++ A AR + LI R+ K+ ++ + + L + G + Y + F Sbjct: 117 S------TLKENLANLARNLNLNLIARSKGKKLVFGKENLRQVLDIKGEAIHYEFDNDCF 170 Query: 188 TQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246 QPN IN M+EWVL + + DLLELYCG GNF+L LA F ++LA E++K ++ Sbjct: 171 IQPNTYINEKMIEWVLKQISTEEKNDLLELYCGYGNFTLALASSFKQILATELSKKNIAY 230 Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306 A N N+ N++ R+SS+E ++A+++EREF RLKDID+ S+ F I +DPPR+GL++ Sbjct: 231 ALKNCTLNNATNIRFARLSSEELSKALKKEREFFRLKDIDLDSFHFSHILLDPPRAGLEE 290 Query: 307 ATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 + + + Q Y HI+YISCNP SL +L+ L+ THTI ALFDQF T H+E GV+L + Sbjct: 291 SVIELAQNYHHIIYISCNPTSLKENLTKLTKTHTITNFALFDQFALTPHLESGVILKK 348 >gi|153217640|ref|ZP_01951321.1| tRNA (uracil-5-)-methyltransferase (tRNA(M-5-U54)-methyltransferase) [Vibrio cholerae 1587] gi|124113414|gb|EAY32234.1| tRNA (uracil-5-)-methyltransferase (tRNA(M-5-U54)-methyltransferase) [Vibrio cholerae 1587] Length = 168 Score = 228 bits (582), Expect = 9e-58, Method: Compositional matrix adjust. Identities = 107/163 (65%), Positives = 130/163 (79%), Gaps = 2/163 (1%) Query: 205 ATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRM 264 T+ +GDLLELYCGNGNFSL LA++F+RVLA E+AK SVEAA++NIAAN + NV+I+RM Sbjct: 5 CTQESKGDLLELYCGNGNFSLALAQNFERVLATELAKLSVEAAQFNIAANQIGNVQIIRM 64 Query: 265 SSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYIS 322 S++EFTQAM +REFNRLKD +D+ SYR TIFVDPPRSG+D T MVQ Y ILYIS Sbjct: 65 SAEEFTQAMEGKREFNRLKDAGVDLQSYRCNTIFVDPPRSGMDIDTCKMVQGYERILYIS 124 Query: 323 CNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 CNP++L +L +L TH + R ALFDQFPYT HME GV+L RK Sbjct: 125 CNPETLKENLQVLGETHQVVRFALFDQFPYTHHMEAGVMLERK 167 >gi|154147974|ref|YP_001406923.1| tRNA (uracil-5-)-methyltransferase [Campylobacter hominis ATCC BAA-381] gi|262827640|sp|A7I332|TRMA_CAMHC RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|153803983|gb|ABS50990.1| tRNA (uracil-5-)-methyltransferase [Campylobacter hominis ATCC BAA-381] Length = 357 Score = 224 bits (572), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 127/357 (35%), Positives = 208/357 (58%), Gaps = 19/357 (5%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69 Y +++ K D L+ F ++IF+S+ ++R AEF IWH+ D+++ M + E Sbjct: 18 YNDEISFKTDFLKSEFKEFYQGEIEIFKSDEWNFRNHAEFGIWHEKGDVFYTM-RGNSNE 76 Query: 70 RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDD 129 R++I+ I +M +++ +R L+ +LF I+++ ++ D + L+YH+ + Sbjct: 77 RVKIETCPKMDKKIVEMMPKLLQNLRENKNLKERLFGIEFIATKFD-FMAILLYHKDI-- 133 Query: 130 AWRECAIRLRDALH--ARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSF 187 ++D L A I++ R+ + + + E++ + IYR ++F Sbjct: 134 ------FNIKDDLAKLAEILDIKISARSRGKFLNFGGEILREKV----QNFIYRFNADAF 183 Query: 188 TQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA 247 Q N +N M+ +VL A K + DLLE+YCG+GNF+L LA F ++LA EI+K S++ A Sbjct: 184 FQSNTKVNEKMILFVLNAVKNGK-DLLEMYCGHGNFTLPLASEFGKILANEISKNSIKNA 242 Query: 248 RYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307 R N + + +N+ VRMS+KE A REFNRLKDIDI + F + VDPPR+G++ Sbjct: 243 REN--SKNKDNINFVRMSAKELIDAFNGVREFNRLKDIDITDFDFSHVLVDPPRAGIEPE 300 Query: 308 TVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 + +Q + +I+YISCNP SL ++L IL TH I + ALFDQF +T H+ECGV+L + Sbjct: 301 VLDFIQNFKNIIYISCNPASLKQNLQILCETHKITKFALFDQFVHTEHIECGVVLQK 357 >gi|32266192|ref|NP_860224.1| tRNA (uracil-5-)-methyltransferase [Helicobacter hepaticus ATCC 51449] gi|50401508|sp|Q7U326|TRMA_HELHP RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|32262242|gb|AAP77290.1| tRNA (uracil-5-)-methyltransferase TrmA [Helicobacter hepaticus ATCC 51449] Length = 404 Score = 214 bits (546), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 127/357 (35%), Positives = 199/357 (55%), Gaps = 25/357 (7%) Query: 28 FQVPN----LQIFRSEPIHYRMRAEF---HIWHDGDDLYHIMFDQQTKERMRID---YFM 77 FQ P +++F S +R RAEF H++ + L M R+ I + Sbjct: 44 FQYPTNPLAIEVFASPQEGFRARAEFRFSHVFQNKSGLDFAMNAFGYNHRVPIKKCPILL 103 Query: 78 PGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIR 137 P I L++ + T L L KL+ + L+S ++ I+TLIYH+ LD W A++ Sbjct: 104 PTLQDIMPLLLHYLNTYDL---LNHKLYACNLLSSLQNEIIITLIYHKSLDSHWESLALK 160 Query: 138 LRDAL-HARKYQIQLIGRANKTKICLDRDYVDERLTVAG-----RTLIYRQIENSFTQPN 191 ++ L + I +IGR+ K L D + E LT+ RT + + E+ F QPN Sbjct: 161 IQKELEYTLNTNIHIIGRSKNHKHILSNDIICEHLTLFANTPKERTYTFFKQESRFCQPN 220 Query: 192 AGINVHMLEWVLAATKGI-----QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246 IN MLE++++A I D+LELYCG+GNF++ LA F + A E+ K ++ Sbjct: 221 PFINTQMLEFIVSALSSIYTPQTPCDMLELYCGSGNFTIPLASIFRHIFATEVVKSAITL 280 Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL-D 305 + N+A N++ N+ R+++ E QA+R+ER F RLK+ID+ ++ F + +DPPRSG+ + Sbjct: 281 LQKNMAKNNIENIIPARLNAFESIQALRKERVFFRLKNIDLDAFAFDCVLIDPPRSGVGE 340 Query: 306 DATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362 + + +Q + I+Y+SCNP +L DL ILS +H + R LFDQFP+T H EC V+L Sbjct: 341 EEVLYFLQNFNTIIYVSCNPHTLLNDLRILSQSHYVMRFGLFDQFPHTYHRECIVIL 397 >gi|291276449|ref|YP_003516221.1| tRNA (uracil-5)-methyltransferase [Helicobacter mustelae 12198] gi|290963643|emb|CBG39475.1| tRNA (uracil-5)-methyltransferase [Helicobacter mustelae 12198] Length = 401 Score = 213 bits (541), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 116/277 (41%), Positives = 165/277 (59%), Gaps = 14/277 (5%) Query: 95 RLEPLLRA-----KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQI 149 +L PLL+ KL+ I+ L Q I+++IYHR L+D+W A L A + Sbjct: 130 QLPPLLQPEILSYKLYAINLLGV--GQGILSMIYHRKLEDSWEHAARNL-----AHSLGV 182 Query: 150 QLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKG- 208 +IGR+ KI + D + L VAGR LIY E +F+QPN IN ML ++LA + Sbjct: 183 SIIGRSKNQKILIGSDLQESSLNVAGRKLIYLHKEGNFSQPNPFINEKMLNFILACLQDH 242 Query: 209 IQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268 + DLLELYCG+GNFS+ LA F+RV A E+ K ++ N N + N+ R+S E Sbjct: 243 PRRDLLELYCGSGNFSIALADSFERVFATEVVKSAIPVLLENARRNDITNLTAARLSGLE 302 Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD-ATVGMVQAYPHILYISCNPDS 327 QA+ ER+F RL+ +D+ + F I VDPPRSG+ D + +Q +P+I+Y+SCNP S Sbjct: 303 TMQALSFERDFFRLRGVDLRDFNFSHILVDPPRSGIGDIKMLHFLQKFPYIIYVSCNPHS 362 Query: 328 LCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 L RD ILS +H + ALFDQFP+T H+E ++L + Sbjct: 363 LKRDFLILSQSHKVIHSALFDQFPHTHHVESIMILQK 399 >gi|224438395|ref|ZP_03659322.1| tRNA (uracil-5-)-methyltransferase [Helicobacter cinaedi CCUG 18818] gi|313144837|ref|ZP_07807030.1| tRNA (uracil-5-)-methyltransferase [Helicobacter cinaedi CCUG 18818] gi|313129868|gb|EFR47485.1| tRNA (uracil-5-)-methyltransferase [Helicobacter cinaedi CCUG 18818] Length = 395 Score = 213 bits (541), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 129/378 (34%), Positives = 206/378 (54%), Gaps = 22/378 (5%) Query: 10 YEQQLAEKVDRLRQMMLA------FQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63 YE+QL K+ + +Q + F NL + S +R RAEF + + + ++ M Sbjct: 18 YEKQLESKLKQTQQEFSSLFSSNGFSSANLSVHNSVEWGFRARAEFRFYTEQNRIHFAMS 77 Query: 64 DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTS-QSDQAIVTLI 122 +++ R I +I M ++ ++ + LR K++ ++L + +S + I++LI Sbjct: 78 NREKNHRTPITQCPILLPIIQKAMPLVIESLEADETLRTKVYACNFLANIESQEIIISLI 137 Query: 123 YHRLLDDAWRECAIRLRDALH-ARKYQIQLIGRANKTKICL-DRDY---VDERLTVAG-- 175 YH+ LD W + A +RD LH A +IGRA KI + D DY V E L + Sbjct: 138 YHKRLDSIWEQKAQNMRDRLHTALNATAHIIGRAKNQKILVGDFDYDSCVRESLRLFADS 197 Query: 176 ---RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGI----QGDLLELYCGNGNFSLVLA 228 + + + E+SF+QPN IN MLE+V+ K + D+LELYCG GNFS+ L+ Sbjct: 198 KQKQNYTFFKQESSFSQPNPFINTKMLEFVITHLKALYPQPDNDMLELYCGGGNFSIALS 257 Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288 F ++LA E+ K ++ + N+ N N+ VR+++ E A+ EREF RL+ IDI Sbjct: 258 GVFRQILATEVVKSAISLLQQNMEQNFCENITPVRLNALETQVALSGEREFFRLRGIDIK 317 Query: 289 SYRFKTIFVDPPRSGLDDATV-GMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALF 347 + F + +DPPRSG+++ + +Q + I+Y+SC P +L +DL L +H I LF Sbjct: 318 RFSFDCVLIDPPRSGVNELKILHFLQQFNTIVYVSCKPHTLLQDLQTLIQSHNILHFGLF 377 Query: 348 DQFPYTRHMECGVLLVRK 365 DQFP+T H EC V+L +K Sbjct: 378 DQFPHTHHRECIVILRQK 395 >gi|330873515|gb|EGH07664.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas syringae pv. glycinea str. race 4] Length = 189 Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 101/189 (53%), Positives = 130/189 (68%) Query: 177 TLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLA 236 T YRQ E +FTQPN +N ML W A Q DLLELYCGNGNF+L LA +VLA Sbjct: 1 TFSYRQPEGAFTQPNGTVNGKMLNWAFDALGERQDDLLELYCGNGNFTLPLATRVRKVLA 60 Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296 EI+K SV AA N+ N V+NV +VR+S++E T+A+ R F RL +D+ SY F ++F Sbjct: 61 TEISKTSVNAALSNLDDNGVDNVTLVRLSAEELTEALNEVRPFRRLHGVDLKSYDFGSVF 120 Query: 297 VDPPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHM 356 VDPPR+G+D T + + + ILYISCNP++L +++ L TH +ER ALFDQFPYT HM Sbjct: 121 VDPPRAGMDPDTCELTRRFERILYISCNPETLAANIAQLHDTHRVERCALFDQFPYTHHM 180 Query: 357 ECGVLLVRK 365 E GVLLVR+ Sbjct: 181 ESGVLLVRR 189 >gi|1717750|sp|P55134|TRMA_NEIGO RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|551910|gb|AAA63404.1| ORF [Neisseria gonorrhoeae] Length = 225 Score = 210 bits (534), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 111/230 (48%), Positives = 147/230 (63%), Gaps = 7/230 (3%) Query: 71 MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDA 130 +R D F S +N LM E++A LR + +++L++ S + +VT+IYH+ LDD Sbjct: 1 IRCDRFDAASEAVNCLMPELIAVAAQSAELRNHWYAVEFLSTLSGEMLVTMIYHKRLDDE 60 Query: 131 WRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQP 190 W + A L+ L I +IGR+ KI L +DYV E L V R YRQIE SFTQP Sbjct: 61 WMKAAQALQQQL-----DISVIGRSRGQKIVLKQDYVTETLRVGDRDFHYRQIEGSFTQP 115 Query: 191 NAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN 250 NA + MLEW A K GDLLELYCGNGNF+L L+R+F +VLA EI+K SV AA++N Sbjct: 116 NAAVCRKMLEWACARRKAWGGDLLELYCGNGNFTLPLSRYFRQVLATEISKTSVSAAQWN 175 Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVD 298 I AN + N+KI R+S++EFT+A +REF RLK+ I + Y F TIFVD Sbjct: 176 IEANWIGNIKIARLSAEEFTEAYTGKREFTRLKESGIVLTDYAFSTIFVD 225 >gi|121730717|ref|ZP_01682830.1| cell division protein FtsY [Vibrio cholerae V52] gi|121627713|gb|EAX60357.1| cell division protein FtsY [Vibrio cholerae V52] Length = 209 Score = 207 bits (526), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 95/198 (47%), Positives = 138/198 (69%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69 Y+ QLA+K+ RL+ M + + +P L++F S +YRMRAEF IWH+GDD+Y+IMF+Q+T+E Sbjct: 11 YQAQLADKIARLKAMFVDYSMPELEVFESPVANYRMRAEFRIWHEGDDMYYIMFNQETRE 70 Query: 70 RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDD 129 + R+D F S LIN LM +M ++ P+LR KLFQ+D+L++ S + +V+L+YHR L + Sbjct: 71 KYRVDQFPAASRLINDLMPLLMDAMKGSPILRHKLFQVDFLSTLSGEILVSLLYHRQLSE 130 Query: 130 AWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQ 189 W A L+ L+ + + LIGRA K K+ LDRDYV E L V G+ +Y+Q+ENSFTQ Sbjct: 131 EWITAAQALKQRLNDEGFNLNLIGRARKMKVVLDRDYVVENLQVNGQPYVYKQVENSFTQ 190 Query: 190 PNAGINVHMLEWVLAATK 207 PNA + MLEW + T+ Sbjct: 191 PNAKVAEKMLEWAVDCTQ 208 >gi|157056867|gb|ABV02450.1| hypothetical protein [Arcobacter nitrofigilis DSM 7299] Length = 179 Score = 200 bits (508), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 91/178 (51%), Positives = 125/178 (70%), Gaps = 1/178 (0%) Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246 FTQPN +N+ M+EWVL + + DL ELYCG GNF++ L+ F++VLA EI+K S+ + Sbjct: 1 FTQPNTKVNIKMIEWVLNNIE-TKDDLCELYCGGGNFTIPLSTKFNKVLATEISKTSINS 59 Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306 A N N++ N+ +RMS++EF +A+ REF RLKDI++ Y F TIFVDPPRSGLDD Sbjct: 60 ALLNCELNNITNIDFIRMSAEEFVEALNSVREFRRLKDINLSDYNFSTIFVDPPRSGLDD 119 Query: 307 ATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 T +V+ Y I+YISCNP++L RDL L +H I +LFDQF Y+ H+E GV+L + Sbjct: 120 TTRELVKNYEQIIYISCNPETLHRDLKELIKSHQILNFSLFDQFSYSGHIETGVILKK 177 >gi|297171088|gb|ADI22100.1| SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [uncultured Planctomycetales bacterium HF0200_11L05] Length = 298 Score = 197 bits (500), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 105/283 (37%), Positives = 170/283 (60%), Gaps = 12/283 (4%) Query: 82 LINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDA 141 LI+ L I+++++ + + KLFQ + S+S + IV+LIYH+ LD W + A +L Sbjct: 23 LISQLKIKLLSSDEM----KEKLFQTEIQVSRSGEGIVSLIYHKPLDANWIKKAKKLSSE 78 Query: 142 LHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEW 201 + A ++GR+ K K+ + +D+V E + + E F+QPN I ML W Sbjct: 79 IGA-----SIVGRSRKQKLVVGKDFVTETYDAHIKKIKVNLYEQCFSQPNPYICDEMLAW 133 Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261 V + +K + + EL+CG G F+++ + RVLA E ++PSV+A N+ N + NV+ Sbjct: 134 V-SKSKKLHHHVTELHCGVGTFTILXXXXYSRVLATENSRPSVKALEKNMHINSIENVET 192 Query: 262 VRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHIL 319 RMS E +A+ ++REFNR+K I++ +R +F+DPPRSGLD ++ +++ Y I+ Sbjct: 193 ARMSGLETLEALIKKREFNRMKHINLIDFRKDVLFLDPPRSGLDVDSINLIKQLKYKEII 252 Query: 320 YISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362 Y+SC SL +L L T + +++ ALFDQFPYT H+E GV+L Sbjct: 253 YLSCGFKSLKSNLKELLTNYKVKKAALFDQFPYTDHIETGVIL 295 >gi|270700645|ref|ZP_06223015.1| tRNA (Uracil-5-)-methyltransferase [Haemophilus influenzae HK1212] gi|270315913|gb|EFA27990.1| tRNA (Uracil-5-)-methyltransferase [Haemophilus influenzae HK1212] Length = 144 Score = 187 bits (476), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 83/144 (57%), Positives = 110/144 (76%) Query: 105 FQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR 164 FQIDYL++ S++ IV+L+YH+ L + W A L+D L + + +Q+IGRA+K KIC ++ Sbjct: 1 FQIDYLSTLSNKIIVSLLYHKTLTEEWESAAKNLKDLLEKQDFDVQIIGRASKQKICFEQ 60 Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFS 224 DYVDE L V GR +YRQ+ENSFTQPNA +N MLEW + T+ +GDLLELYCGNGNFS Sbjct: 61 DYVDEVLPVNGRNYVYRQVENSFTQPNATVNCKMLEWAIDCTQNSEGDLLELYCGNGNFS 120 Query: 225 LVLARHFDRVLAVEIAKPSVEAAR 248 + LA++F +VLA EIAKPSV AA+ Sbjct: 121 IALAQNFRKVLATEIAKPSVAAAQ 144 >gi|302841023|ref|XP_002952057.1| hypothetical protein VOLCADRAFT_118051 [Volvox carteri f. nagariensis] gi|300262643|gb|EFJ46848.1| hypothetical protein VOLCADRAFT_118051 [Volvox carteri f. nagariensis] Length = 454 Score = 180 bits (456), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 85/157 (54%), Positives = 114/157 (72%), Gaps = 1/157 (0%) Query: 210 QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269 Q DLLELYCGNGNF++ LA++F RV+A E+AK SVEAAR+N+ AN V+NV + RM+S+EF Sbjct: 298 QDDLLELYCGNGNFTVPLAQNFRRVVATEVAKSSVEAARFNLEANGVSNVFLARMASEEF 357 Query: 270 TQAMRREREFNRLKDIDI-HSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYISCNPDSL 328 + MR RL+ + R +TI VDPPR+GLD TV +++ + I+YISCNP++L Sbjct: 358 AETMRSRGSRRRLEGLGPWEELRLRTILVDPPRAGLDGFTVELLKEFDRIVYISCNPETL 417 Query: 329 CRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 +L ++TTH I R A FDQFPYT H+ECGV L R+ Sbjct: 418 HANLRAIATTHKIARFAAFDQFPYTHHLECGVYLTRR 454 Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 71/214 (33%), Positives = 106/214 (49%), Gaps = 31/214 (14%) Query: 8 DQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYR-----MRAEFHIWHDGDDLYHIM 62 QY QL KV +L+++ F P+L++F S P ++ L H+ Sbjct: 33 SQYGSQLQAKVFKLKELFREFDPPDLEVFESPPRRAPPQPPPLKTALKAPLPQPALRHL- 91 Query: 63 FDQQTKERMRIDYFMPGSLLINALMIEMMATIRLE----PLLRAKLFQIDYLTSQSDQAI 118 Q +R ++ +N E+M +R E P LR +LFQ+++ T+ + A+ Sbjct: 92 ---QQWQRRHVE--------VN----ELMEAVRQECIQCPELRNRLFQVNFHTTLAGDAM 136 Query: 119 VTLIYHRLLDDAWRECAIRLRDALHARKY------QIQLIGRANKTKICLDRDYVDERLT 172 VTL+YHR L W A RLRD L A + +IGR+ K K+ LD +V ERL Sbjct: 137 VTLLYHRKLGAEWTAAAERLRDVLAATPTAAAAGRRPHVIGRSRKQKVDLDASFVLERLR 196 Query: 173 VAGRTLIYRQIENSFTQPNAGINVHMLEWVLAAT 206 V GR + +Q+E +F+QPN + HML W L T Sbjct: 197 VGGREYVQKQVEGAFSQPNGTVCQHMLGWALDVT 230 >gi|53729021|ref|ZP_00134290.2| COG2265: SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] Length = 132 Score = 175 bits (443), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 83/132 (62%), Positives = 103/132 (78%) Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293 +LA EI+K SV++A+YNI N ++N++I+RMS++EFTQAM REFNRLK ID+ +Y Sbjct: 1 MLATEISKSSVQSAQYNIEQNGIDNLQIIRMSAEEFTQAMNGVREFNRLKGIDLKAYDCN 60 Query: 294 TIFVDPPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYT 353 TIFVDPPR+GLD T+ MVQAY ILYISCNP +L +L LS TH IER ALFDQFPYT Sbjct: 61 TIFVDPPRAGLDQDTLNMVQAYERILYISCNPYTLAENLRQLSLTHRIERAALFDQFPYT 120 Query: 354 RHMECGVLLVRK 365 H+E GV L+RK Sbjct: 121 HHVESGVWLIRK 132 >gi|257460625|ref|ZP_05625726.1| trna (uracil-5-)-methyltransferase (trna(m-5-u54)-methyltransferase) [Campylobacter gracilis RM3268] gi|257441956|gb|EEV17098.1| trna (uracil-5-)-methyltransferase (trna(m-5-u54)-methyltransferase) [Campylobacter gracilis RM3268] Length = 519 Score = 169 bits (427), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 77/154 (50%), Positives = 105/154 (68%) Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271 DLLELYCG+GNF++ LA F+RVLA EI+K S+ AR N N V N + VR+S+ E Sbjct: 365 DLLELYCGHGNFTIPLAAKFNRVLASEISKSSIANARINCELNGVCNAQFVRLSADELMS 424 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYISCNPDSLCRD 331 A R REF RLK IDI Y F + +DPPR+GL+ + + ++ + +++YISCNP +L + Sbjct: 425 AFARRREFERLKGIDIFGYDFSHVLIDPPRAGLEPSVIDFIKNFENLIYISCNPQTLFEN 484 Query: 332 LSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 L L TH + R A+FDQF +T H+ECGVLL R+ Sbjct: 485 LRSLCATHEVRRFAIFDQFAHTAHIECGVLLKRR 518 Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 59/193 (30%), Positives = 99/193 (51%), Gaps = 14/193 (7%) Query: 38 SEPIHYRMRAEFHIWHD----GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMAT 93 S+P +YR+RAEF IWHD DL + M ++K ++ I+ +L I LM ++ Sbjct: 46 SQPQNYRIRAEFGIWHDIWHSAFDLAYTMGGARSK-KILINECPKVALPIANLMPRLLEV 104 Query: 94 IRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIG 153 +R L+ KLF +++++ S + TL+YH+ L + +E L A K I+++ Sbjct: 105 LRRSEALKEKLFGVEFISCASG-ILATLLYHKRLGEREQEAICEL-----AGKLGIRVMA 158 Query: 154 RANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATK-GIQGD 212 RA K+ + + L V R +R EN+F QPN G+N M+ W + G +G Sbjct: 159 RARGQKLLSGELSLTDELCVDERVYKFRFGENAFIQPNRGVNEKMIAWARSCVDFGKEG- 217 Query: 213 LLELYCGNGNFSL 225 + + C NF++ Sbjct: 218 -MGVVCAAQNFAV 229 >gi|213419975|ref|ZP_03353041.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 137 Score = 161 bits (407), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 79/131 (60%), Positives = 96/131 (73%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L +QYE QLAEKV RL+ MM F ++FRS HYRMRAEF +WHDGD+LYHIMFD Sbjct: 7 LPTEQYEAQLAEKVARLQSMMAPFSGLVPEVFRSPVSHYRMRAEFRLWHDGDNLYHIMFD 66 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTK R+R+D F S LIN LM M+A +R LR KLFQIDYLT+ S+QA+V+L+YH Sbjct: 67 QQTKSRIRVDTFPAASQLINTLMKAMIAGVRDNHALRHKLFQIDYLTTLSNQAVVSLLYH 126 Query: 125 RLLDDAWRECA 135 + LD+ WRE A Sbjct: 127 KKLDEEWREAA 137 >gi|213161654|ref|ZP_03347364.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] Length = 102 Score = 156 bits (394), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 70/102 (68%), Positives = 83/102 (81%) Query: 264 MSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYISC 323 M+++EFTQAM REFNRL+ ID+ Y+ +TIFVDPPRSGLD T MVQAYP ILYISC Sbjct: 1 MAAEEFTQAMNGVREFNRLQGIDLKRYQCETIFVDPPRSGLDSETEKMVQAYPRILYISC 60 Query: 324 NPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 NP++LC++L LS THT+ RLALFDQFPYT HMECGVLL + Sbjct: 61 NPETLCKNLETLSQTHTVSRLALFDQFPYTHHMECGVLLTAR 102 >gi|255073729|ref|XP_002500539.1| predicted protein [Micromonas sp. RCC299] gi|226515802|gb|ACO61797.1| predicted protein [Micromonas sp. RCC299] Length = 1143 Score = 150 bits (378), Expect = 4e-34, Method: Composition-based stats. Identities = 128/450 (28%), Positives = 197/450 (43%), Gaps = 121/450 (26%) Query: 34 QIFRSEPIHYRMRAEFHI-WHD------------------GDDLYHIMFDQQTKERMRID 74 ++F S P+++R R F + W D G L + M+++ K + I Sbjct: 696 EVFPSPPLNFRSRCRFQVMWEDAPVTAESTGITPGESVEPGRRLSYRMWNK-GKPTVPIT 754 Query: 75 YFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQA--IVTLIYHRLLDDAWR 132 F I LM ++ P L L I +L S+ + +VT++Y R +D+AW+ Sbjct: 755 EFPMALREIEELMPAVLREAEAHPELGDGLQAIHFLASRGIRGGMLVTMVYGRPIDEAWK 814 Query: 133 ECA----IRLRDAL---HARKYQ------------------------IQLIGRANKTKIC 161 A RL+ A+ R Y + ++GR+ T+I Sbjct: 815 MAAEGPRARLKAAMVDIRERVYGGGDDDGFDGFAGPRGDDEELDATALNILGRSRGTQIV 874 Query: 162 L-DRDYVDERLTVA-GRTLIYRQIENSFTQPNAGINVHMLEWVL--AAT----------- 206 + D +V E L + GR L YRQ E +F+ PN+ + L+W+ AAT Sbjct: 875 VGDACHVFETLALRDGRRLRYRQAEGAFSNPNSFMAESTLDWLCDCAATTVREALGGTSE 934 Query: 207 ---KGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVR 263 + LLELY GNGN ++ LA++FD V AVE++ EAAR N+ N V N K++ Sbjct: 935 HSAEAAPPSLLELYSGNGNHTVALAKYFDSVAAVELSGVLCEAARENLERNGVENAKVLH 994 Query: 264 MSSKEFTQAMRRER---EFNRLK-----------------------DIDIHSYRFKTIFV 297 S+ + M R + E R+ + DI++Y + V Sbjct: 995 SPSESVARGMLRRKKRHEEGRVGKAAMAAAATGAGDGSKRGDGSGMEFDINAY--DVVLV 1052 Query: 298 DPPRSGLDDATVGMVQAYPHILYISCNP----------------------DSLCRDLSIL 335 DPPR+GLD T+ +V + +LYISC+P + + S L Sbjct: 1053 DPPRAGLDPDTLDLVSRFDVVLYISCDPRKGLLENAVGPHAARALDTGEFEGEFKGWSGL 1112 Query: 336 STTHTIERLALFDQFPYTRHMECGVLLVRK 365 + TH + R A+FD FPYTRH+ECG VR+ Sbjct: 1113 ARTHDLVRFAVFDHFPYTRHIECGACFVRR 1142 >gi|167533187|ref|XP_001748274.1| hypothetical protein [Monosiga brevicollis MX1] gi|163773394|gb|EDQ87035.1| predicted protein [Monosiga brevicollis MX1] Length = 401 Score = 150 bits (378), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 97/290 (33%), Positives = 149/290 (51%), Gaps = 22/290 (7%) Query: 81 LLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDD-AWRECAIRLR 139 LL+ A + + + RL R+ F + + SD +++ L+Y LD+ WRE A R Sbjct: 116 LLMRAFLEHLASDDRLAKSCRSLNFHV----TLSDDSMLALVYEEPLDEVGWREAAEACR 171 Query: 140 DALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS-FTQPNAGINVHM 198 AL ++GRA K I L R +V ER + +Y+Q E S F+ P+A + + Sbjct: 172 TALGLGT----IVGRAKKQCIALPRTHVLERFPLQPGLDVYQQQEESIFSNPSAPMCLQT 227 Query: 199 LEWVLAATKGIQG---DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH 255 ++W++ + G +LLELY G+G ++ + F VL+VEI + VEAAR N+ NH Sbjct: 228 MQWLVEVARQFGGTDLNLLELYSGSGTYTPAMCSVFAHVLSVEIQRTLVEAARRNLELNH 287 Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY 315 + V + EF + + R RE R+ + +DPPR GLDD T + + Sbjct: 288 CESRATVHRAPVEFCRRLLRSREHE--------GRRYDAVLLDPPRDGLDDFTRSQLHNF 339 Query: 316 PHILYISCNP-DSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 ++ ISC+P L D L TTH + R+ + D FP TRH+E V+ VR Sbjct: 340 EVVMLISCSPLRKLILDAEALHTTHRLARMVILDHFPGTRHLEAAVVFVR 389 >gi|308798903|ref|XP_003074231.1| tRNA (ISS) [Ostreococcus tauri] gi|116000403|emb|CAL50083.1| tRNA (ISS) [Ostreococcus tauri] Length = 351 Score = 150 bits (378), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 103/361 (28%), Positives = 166/361 (45%), Gaps = 21/361 (5%) Query: 13 QLAEKVDRLRQMMLAFQVPN--LQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKER 70 L KV RLR P+ +I S +R R F + D Sbjct: 2 SLENKVARLRVAFADVLTPSTSFEIAESANSGHRSRCRFQVVRDDAGALKYALWANGGPN 61 Query: 71 MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDA 130 ++ F I +M ++ L +L S + ++ + L +D Sbjct: 62 AIVETFPDAVGAIQDVMKGVLRAAERRKACERGLEAAHFLASVASGRVLVTLVEMLANDG 121 Query: 131 WRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTV-AGRTLIYRQIENSFTQ 189 D + A+ ++L+GR+ + D V+E + G TL Y E SF+ Sbjct: 122 ---------DGVFAK---VELMGRSKGVVVKTGSDRVEETYELRDGTTLRYHHAEGSFSN 169 Query: 190 PNAGINVHMLEWVLAATKGIQGD-----LLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 PN I + +E++ A I GD LELYCG N S LA FDR++AVEI V Sbjct: 170 PNRAITIATMEFLRACACEIVGDGKNVSALELYCGCANHSCALATIFDRIVAVEINPSLV 229 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AAR ++ N ++NV++V S+ ++M + F ++ + S F + VDPPR+GL Sbjct: 230 TAARESLEMNEIDNVEVVLADSQNVARSMMAGK-FVDVQGKALSSTDFDVVLVDPPRAGL 288 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D T+ +V + H+LY+SC P++L +++ +TH +E+ + D FP TRH+E V + R Sbjct: 289 DPDTLRLVSTFDHVLYVSCGPENLLQNIRNGLSTHVVEKFIVLDHFPNTRHIEVAVYMRR 348 Query: 365 K 365 + Sbjct: 349 R 349 >gi|183179753|ref|ZP_02957964.1| tRNA (uracil-5-)-methyltransferase (tRNA(M-5-U54)-methyltransferase) [Vibrio cholerae MZO-3] gi|183013164|gb|EDT88464.1| tRNA (uracil-5-)-methyltransferase (tRNA(M-5-U54)-methyltransferase) [Vibrio cholerae MZO-3] Length = 105 Score = 142 bits (357), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 67/104 (64%), Positives = 79/104 (75%), Gaps = 2/104 (1%) Query: 264 MSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYI 321 MS++EFTQAM +REFNRLKD +D+ SYR TIFVDPPRSG+D T MVQ Y ILYI Sbjct: 1 MSAEEFTQAMEGKREFNRLKDAGVDLQSYRCNTIFVDPPRSGMDIDTCKMVQGYERILYI 60 Query: 322 SCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 SCNP++L +L +L TH + R ALFDQFPYT HME GV+L RK Sbjct: 61 SCNPETLQENLQVLGETHQVVRFALFDQFPYTHHMEAGVMLERK 104 >gi|145340680|ref|XP_001415448.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144575671|gb|ABO93740.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 308 Score = 142 bits (357), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 96/311 (30%), Positives = 156/311 (50%), Gaps = 10/311 (3%) Query: 62 MFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD-QAIVT 120 M+D+ M +D F I +M ++ LR L +L ++ + + T Sbjct: 1 MWDRGAPTVM-VDDFPMARRAIRDVMGRLLREASAVAALRDGLEATHFLCGVAEGKVLAT 59 Query: 121 LIYHRLLD-DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVA-GRTL 178 L+Y ++ DAW A RL A ++L+GR D+V E + G L Sbjct: 60 LVYSTPINVDAWTLAARRLL-ATKFDDVSLELMGRCKGVVAKTGDDFVWEEYELGDGSVL 118 Query: 179 IYRQIENSFTQPNAGINVHMLEWVLAATK---GIQGDLLELYCGNGNFSLVLARHFDRVL 235 Y+ E +F+ PN I + +E++ A K + LLELYCGN N + LA ++RV+ Sbjct: 119 TYKHTEGAFSNPNRTITIATMEFLRDAAKKKFSRRKMLLELYCGNANHTCALANLYERVV 178 Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295 AVE+ V+AAR ++ N V+NV I+ S+ +++ R + F I F + Sbjct: 179 AVEVNPVLVDAARESLDMNSVSNVDIILSPSESVAKSLLRGK-FKDAAGATIRVEDFDAV 237 Query: 296 FVDPPRSGLDDATVGMVQAYPHILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTR 354 VDPPR+GLD T+ +V H+LY+SC P++L ++ L TH ++ + D FP+TR Sbjct: 238 LVDPPRAGLDADTLALVSQIDHVLYVSCGPENLLANIRDGLDATHAVDDFIVLDHFPWTR 297 Query: 355 HMECGVLLVRK 365 H+E V + ++ Sbjct: 298 HIEVAVSMRKR 308 >gi|289807568|ref|ZP_06538197.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 91 Score = 140 bits (352), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 64/91 (70%), Positives = 78/91 (85%) Query: 238 EIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFV 297 EIAKPSV AA+YNIAANH++NV+I+RM+++EFTQAM REFNRL+ ID+ Y+ +TIFV Sbjct: 1 EIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKRYQCETIFV 60 Query: 298 DPPRSGLDDATVGMVQAYPHILYISCNPDSL 328 DPPRSGLD T MVQAYP ILYISCNP++L Sbjct: 61 DPPRSGLDSETEKMVQAYPRILYISCNPETL 91 >gi|297518334|ref|ZP_06936720.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli OP50] Length = 86 Score = 138 bits (347), Expect = 1e-30, Method: Composition-based stats. Identities = 62/86 (72%), Positives = 71/86 (82%) Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTH 339 NRL+ ID+ SY+ +TIFVDPPRSGLD T MVQAYP ILYISCNP++LC++L LS TH Sbjct: 1 NRLQGIDLKSYQCETIFVDPPRSGLDSETEKMVQAYPRILYISCNPETLCKNLETLSQTH 60 Query: 340 TIERLALFDQFPYTRHMECGVLLVRK 365 +ERLALFDQFPYT HMECGVLL K Sbjct: 61 KVERLALFDQFPYTHHMECGVLLTAK 86 >gi|255080342|ref|XP_002503751.1| predicted protein [Micromonas sp. RCC299] gi|226519018|gb|ACO65009.1| predicted protein [Micromonas sp. RCC299] Length = 512 Score = 135 bits (341), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 130/455 (28%), Positives = 196/455 (43%), Gaps = 92/455 (20%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-VP--NLQIFRSEPIH-YRMRAEFHIWHD-GD 56 S T D Y + LA+K R+R++ +P ++++ S YR R F I D G Sbjct: 58 SDTSTNDAYLELLADKTKRVRELFHGGGFIPARGVEVYASPKTRGYRSRCRFAIARDDGG 117 Query: 57 DLYHIMFDQQ---------TKERMRIDYFMPGSLLINALM---IEMMATIRLEPLLRA-- 102 L + +F+ E D F S I +M +E++ P RA Sbjct: 118 RLRYALFENGEVVMLGDDDADEDGDTDVFPWASEPIARVMPVLLELLNDADGSPNARALT 177 Query: 103 -KLFQIDYLTSQSDQAIVTLIYHRLLDDA-----------------WRECAIRLRDALHA 144 L + +L S+ + +VTL ++R+ D+A W + A L +L + Sbjct: 178 TGLSAVGFLASRGGEVVVTL-WNRMTDNAGDTNTAGDANTAIGDAEWNDDANGLLSSLRS 236 Query: 145 RKYQIQLIGRANKTKICLDR-DYVDERLTVAG---------------------------- 175 + R KT + + ++V E +TV G Sbjct: 237 VGVTGVVTRRRRKTLVASNGVNHVWEPMTVPGDIPGDIEIIAAVPGDIPGDVGTGTTRSQ 296 Query: 176 -RTLIYRQIENSFTQPNAGINVHMLEWVLAAT---------KGIQ-GD--------LLEL 216 R L Y+Q+E +F+ PN + W+ A KG+ G LLEL Sbjct: 297 SRHLRYKQVEGAFSNPNGDVAEVTARWLHDACEDILLARNKKGLGLGSTPLSTLPWLLEL 356 Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276 YCGNGN ++ L+ F RV AVEI V AA N A N V N + + ++ F +A Sbjct: 357 YCGNGNHAVSLSPRFGRVTAVEIEPRLVAAANENFAVNGVANATVTALPAEVFARARTGT 416 Query: 277 REFNRLKDIDI-----HSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYISCNPDSLCRD 331 L D+ ++R T+ VDPPR+GLD+ T+ +V + +LY++C+ SL RD Sbjct: 417 GSRGLLDGDDVDQLLADAWRDGTVLVDPPRAGLDEDTLALVAGFGSVLYVACDCASLARD 476 Query: 332 L-SILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 L S L TH + R+ALFD FP +R E V L K Sbjct: 477 LKSTLGKTHEVRRMALFDHFPGSRFCEVVVWLEAK 511 >gi|303277405|ref|XP_003057996.1| predicted protein [Micromonas pusilla CCMP1545] gi|226460653|gb|EEH57947.1| predicted protein [Micromonas pusilla CCMP1545] Length = 484 Score = 133 bits (335), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 89/248 (35%), Positives = 123/248 (49%), Gaps = 29/248 (11%) Query: 141 ALHARKYQIQ-LIGRANKTKICLDRDYVDERLTVA-GRTLIYRQIENSFTQPNAGINVHM 198 AL AR + G A+ + YV E L + G Y+ E +F+ PNA + H Sbjct: 229 ALSARVVPVPGAAGDASPSPSRPGETYVVETLRLDDGDAFAYKNAEGAFSNPNAWMAEHT 288 Query: 199 LEWV------LAATKGIQG-DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251 L W+ +AA +G G LLELYCG GN ++ LA F RV+AVEI++ +AAR N+ Sbjct: 289 LTWLRSCARAIAAERGGAGASLLELYCGCGNHTVALAGMFTRVVAVEISEELCDAARDNL 348 Query: 252 AANHVN-NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310 N + V IV S + RE + + F + VDPPR+GLD T+ Sbjct: 349 RRNGIEEGVSIVHAPSASVS----RELLRGGGGGLGLGLDAFDVVLVDPPRAGLDADTLA 404 Query: 311 MVQAYPHILYISCNPDSLCRDLSI---------------LSTTHTIERLALFDQFPYTRH 355 +V+ + ++LYISC+P SL RD LS TH + + A+FD FPYTRH Sbjct: 405 LVKRFEYVLYISCDPASLARDAMGGEEGNGNGKGGGTLRLSDTHDVVKFAVFDHFPYTRH 464 Query: 356 MECGVLLV 363 E G Sbjct: 465 AEVGACFA 472 >gi|323452203|gb|EGB08078.1| hypothetical protein AURANDRAFT_64406 [Aureococcus anophagefferens] Length = 918 Score = 127 bits (318), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 83/229 (36%), Positives = 116/229 (50%), Gaps = 20/229 (8%) Query: 149 IQLIGR-ANKTKICLDRDYVDERLTVA-GRTLIYRQIENSFTQPNAGINVHMLEWVLA-- 204 + ++GR T + D+V + L +A GR Y E SF+ P N L+W++A Sbjct: 595 VHVVGRFKGSTLLSGTNDFVVDALDLADGRRPRYEFPEGSFSHPCGSANERSLDWLVARV 654 Query: 205 ----ATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK 260 A G +LLELYCG GN ++ LA R +AVE+ AA+ N+ N V N Sbjct: 655 DNIRANLGRAPNLLELYCGCGNHTVALAPATGRTVAVEVDARLTAAAKRNLDRNGVANAT 714 Query: 261 IVR---MSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH 317 IV +S+ +A+R +R + F + VDPPR GLD AT + AY H Sbjct: 715 IVTDTVGASRGVHRALRAKRSGDVC---------FDLLLVDPPRRGLDAATRTCLAAYDH 765 Query: 318 ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRKP 366 +L++SCNP +L DL L TH + A+ D FP T H EC V R+P Sbjct: 766 VLFVSCNPAALAEDLKALEPTHAVAAAAVVDGFPGTPHCECLVHFARRP 814 >gi|96865|pir||B37321 tRNA (uracil-5-)-methyltransferase (EC 2.1.1.35) - Salmonella typhimurium (fragment) Length = 111 Score = 118 bits (295), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 63/106 (59%), Positives = 74/106 (69%), Gaps = 1/106 (0%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPI-HYRMRAEFHIWHDGDDLYHIMF 63 L +QYE QLAEKV RL+ MM F ++F+ P+ HYRMRAEF +WHDGDDLYHIMF Sbjct: 6 LPTEQYEAQLAEKVARLQSMMAPFSGLVPEVFQLMPVSHYRMRAEFRLWHDGDDLYHIMF 65 Query: 64 DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDY 109 DQQT R+R+D F S LIN LM M+A +R LR KLFQIDY Sbjct: 66 DQQTFCRIRVDTFPAASQLINTLMKAMIAGVRDNHALRHKLFQIDY 111 >gi|326428288|gb|EGD73858.1| hypothetical protein PTSG_12338 [Salpingoeca sp. ATCC 50818] Length = 440 Score = 115 bits (288), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 86/313 (27%), Positives = 137/313 (43%), Gaps = 70/313 (22%) Query: 109 YLTSQSDQAIVTLIYHRLLDDA--WRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY 166 + + +D A++T IY ++D WR A RL +RK+ L+ R+ ++ + DY Sbjct: 142 FHCTTTDDAMITFIYDAAIEDEGRWRHEAQRL-----SRKWGCHLLARSKGQRLVVGNDY 196 Query: 167 VDERLTV-------------------------------------------------AGRT 177 V+E LT+ A Sbjct: 197 VEEVLTLPPLNDDNTGGTSYPGSSRRQADTTALTTTTTTTTTSNSQSGTTARSSGAAALR 256 Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD---LLELYCGNGNFSLVLARHFDRV 234 ++ RQ E +F+ PN I + + W+ ++ D +LELY G G ++ +L FD V Sbjct: 257 IVLRQPEGAFSNPNPYICLRTMLWLRQRAALVRADVRHMLELYAGAGTYTPILGHLFDAV 316 Query: 235 LAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293 VEI+ V AA++N AN V+ V++VR +A+R + + F Sbjct: 317 TTVEISTALVAAAQHNATANGVDERVRVVRAP----VEAVR-----HIISSASHEGVTFD 367 Query: 294 TIFVDPPRSGLDDATVGMVQAYPHILYISCNP-DSLCRDLSILSTTHTIERLALFDQFPY 352 + +DPPR+G D T+ + Y HI+ +SCNP + RDL +L TH I D FP Sbjct: 368 AVMLDPPRAGADAFTISCLGQYKHIILLSCNPLHTFPRDLRVLCRTHRIASAIALDHFPQ 427 Query: 353 TRHMECGVLLVRK 365 T H E + L+R+ Sbjct: 428 TPHFEAAMHLIRR 440 >gi|303280081|ref|XP_003059333.1| predicted protein [Micromonas pusilla CCMP1545] gi|226459169|gb|EEH56465.1| predicted protein [Micromonas pusilla CCMP1545] Length = 459 Score = 114 bits (284), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 72/211 (34%), Positives = 104/211 (49%), Gaps = 26/211 (12%) Query: 177 TLIYRQIENSFTQPNAGINVHMLEWV--------LAATKGIQG------------DLLEL 216 TL Y+Q+E +F+ PN + V + A K G L EL Sbjct: 250 TLTYKQVEGAFSCPNGDVAEETARSVVTEIAYERIGAGKTKNGFSEDVTEFPTLSSLTEL 309 Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276 YCGNGN + LA +FD V AVEI AA N AN V N + + ++ F E Sbjct: 310 YCGNGNHTCSLAPYFDEVSAVEIDPRLCAAAAENFKANGVANATVRALPAEAFAA----E 365 Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLS--I 334 E K ++ + VDPPR+GLD+ T+ + + + I+YI+C+ ++L RDL Sbjct: 366 TEGEDAKKLNGALNTEGVVLVDPPRAGLDEKTLALARKFRSIIYIACDFNALHRDLEERG 425 Query: 335 LSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 L TH ++ LALFD FP++ +E V L R+ Sbjct: 426 LRRTHVVKELALFDHFPFSAFVEVAVRLERR 456 >gi|213029277|ref|ZP_03343724.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 100 Score = 113 bits (282), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 55/91 (60%), Positives = 65/91 (71%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L +QYE QLAEKV RL+ MM F ++FRS HYRMRAEF +WHDGD+LYHIMFD Sbjct: 6 LPTEQYEAQLAEKVARLQSMMAPFSGLVPEVFRSPVSHYRMRAEFRLWHDGDNLYHIMFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIR 95 QQTK R+R+D F S LIN LM M+A +R Sbjct: 66 QQTKSRIRVDTFPAASQLINTLMKAMIAGVR 96 >gi|330883013|gb|EGH17162.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas syringae pv. glycinea str. race 4] Length = 171 Score = 107 bits (266), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 63/167 (37%), Positives = 91/167 (54%), Gaps = 6/167 (3%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69 Y++QL EK RLR+++ F P Q+F S HYR+RAEF +W + Y+ MF Sbjct: 10 YDRQLEEKTVRLRELLAPFDAPEPQVFDSPREHYRLRAEFRLWREDQKRYYAMFAPGDNR 69 Query: 70 RMRIDYFMP-GSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLD 128 + +P S INALM + P L KLFQ+D+LT+ + A++T+ YHR LD Sbjct: 70 TPILLEGLPIASERINALMPVLRERWEASPTLNHKLFQVDFLTTLAGDAMITMCYHRPLD 129 Query: 129 DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175 W+ A A + + LIGR+ K+ + +DYV E+L VAG Sbjct: 130 AEWQAAA-----EQLAAELNVSLIGRSKGQKLIIGQDYVTEKLDVAG 171 >gi|192362323|ref|YP_001983036.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Cellvibrio japonicus Ueda107] gi|190688488|gb|ACE86166.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Cellvibrio japonicus Ueda107] Length = 485 Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 99/351 (28%), Positives = 160/351 (45%), Gaps = 42/351 (11%) Query: 33 LQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMA 92 L RSE + YR RA +W++ D + F QQ +R + S+L+ AL ++ Sbjct: 158 LPPLRSESLGYRSRARLGVWYEADSSVTLGFRQQ--QRKTLTNIESCSVLLPALN-RLIG 214 Query: 93 TIR--LEPLLRAK-LFQIDYLTSQSDQAIV---TLIYHRLLDDAWRECAIRLRDALHARK 146 +R L+ + K + I+ + +QS A++ T L A E A R Sbjct: 215 PLRQWLQARVANKAVTHIELVAAQSGPAVIVRHTKPLVALQRQALAELAQR-------ES 267 Query: 147 YQIQLIGRANKTKICLDRDYVDERLT--VAGRTLIYRQIENSFTQPNAGINVHMLEWVLA 204 Q+ L N+ L+ VD L VAG L + FTQ N +N M++ L Sbjct: 268 CQVWLEPNGNQGLTDLEGSPVDPHLVLDVAGLPLHFH--PQDFTQVNPAVNGRMVQQALE 325 Query: 205 ATKGIQGDL-LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVR 263 DL L+ +CG GNF+L +A RV+ +E+ +P V A+ N ++N+ Sbjct: 326 LLAPGTNDLVLDFFCGMGNFTLPMASRVARVIGLEVVEPMVTRAQANATRLGLDNL---- 381 Query: 264 MSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV--------GMVQAY 315 EF +A + + RL+ + + I +DPPR G + G + A Sbjct: 382 ----EFLKADLSQMDSPRLRQL---CSQASAILLDPPRDGAKELVTQLRDLRRKGQLSAQ 434 Query: 316 PHILYISCNPDSLCRDLSILS-TTHTIERLALFDQFPYTRHMECGVLLVRK 365 I+Y+SCNP +L RD ++L+ + ++ L + D FP+T H+E L + K Sbjct: 435 -RIVYVSCNPATLARDAALLAEAGYGLDALGVMDMFPHTSHVESMALFLYK 484 >gi|552024|gb|AAA27233.1| m-5-U54 transfer RNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium] Length = 102 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 54/92 (58%), Positives = 65/92 (70%), Gaps = 1/92 (1%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPI-HYRMRAEFHIWHDGDDLYHIMF 63 L +QYE QLAEKV RL+ MM F ++F+ P+ HYRMRAEF +WHDGDDLYHIMF Sbjct: 6 LPTEQYEAQLAEKVARLQSMMAPFSGLVPEVFQLMPVSHYRMRAEFRLWHDGDDLYHIMF 65 Query: 64 DQQTKERMRIDYFMPGSLLINALMIEMMATIR 95 DQQT R+R+D F S LIN LM M+A +R Sbjct: 66 DQQTFCRIRVDTFPAASQLINTLMKAMIAGVR 97 >gi|219110143|ref|XP_002176823.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217411358|gb|EEC51286.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 403 Score = 103 bits (256), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 108/368 (29%), Positives = 159/368 (43%), Gaps = 66/368 (17%) Query: 43 YRMRAEFHIWH-----DGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLE 97 YR R F I H DG Y + +Q E + I F +L I M ++A + Sbjct: 55 YRCRCSFQIVHGDMKSDGHLRYAV---RQNHEPVCITAFPVANLRIQRSMWNVLALFN-D 110 Query: 98 P-----LLRAKLFQIDYLTSQSDQ-AIVTLIYHRLLDD--AWRECAIRLRDALHARKYQI 149 P L+ L + TS + +VTL Y + D AW A + L Sbjct: 111 PEEQFGQLKQSLTSATFSTSWDETMCVVTLHYMNPVSDESAWETEAQNMCQRLEL----A 166 Query: 150 QLIGRANK---------TKICLDRDY-----------VDERLTVAGRTLI-YRQIENSFT 188 QL GR+ K T I D + +++ LT + R + Y + E++F Sbjct: 167 QLTGRSRKRILRTRNEGTTIICDTIWMERVGSNWNVSLEKTLTSSDRIAVHYNKPEDAFY 226 Query: 189 QPNAGINVHMLEWVLAATKGIQGDL-------LELYCGNGNFSLVLARH--FDRVLAVEI 239 PN+ + LEW+L+ I DL LE+YCG G ++ LA+ ++LA+E+ Sbjct: 227 HPNSRAMCNALEWMLSRIVLIVADLETLTPRLLEMYCGCGAHTIPLAKTGLLSKILAIEL 286 Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299 + V A + NI N +++ I +S + R E F+ I VDP Sbjct: 287 DERLVRACQQNILLNGIDSELIDMVSQDAGKWSQRCESSFD-------------IILVDP 333 Query: 300 PRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHME 357 PR GLD++ M + H+LYISC D+L RDL L + +E L D FP T +E Sbjct: 334 PRQGLDESVCQMATRGDFQHMLYISCGRDALVRDLERLGGSFAVENCTLLDLFPTTGAVE 393 Query: 358 CGVLLVRK 365 V L RK Sbjct: 394 SLVHLKRK 401 >gi|300814888|ref|ZP_07095119.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300510978|gb|EFK38247.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 428 Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 54/157 (34%), Positives = 84/157 (53%), Gaps = 14/157 (8%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + +LY G G SL +A + L VEI + ++E AR N N + + + S+E + Sbjct: 284 IADLYSGVGTLSLEIASRKAQTLGVEIVEEAIEDARINAQKNKLQ-ARFICGKSEEILEK 342 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCR 330 ++++ + + I VDPPR G+D V + +Y I+YISCNP +L R Sbjct: 343 IQKDEKI-----------KMDKILVDPPRKGMDKKLVDYLNKNSYEKIVYISCNPATLAR 391 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRKPS 367 DL IL + +E++ +FD FPYT H+EC L+ R S Sbjct: 392 DLKILKEKYKVEKVEIFDLFPYTSHVECIALIQRVKS 428 >gi|260901362|ref|ZP_05909757.1| tRNA (uracil-5-)-methyltransferase [Vibrio parahaemolyticus AQ4037] gi|308108437|gb|EFO45977.1| tRNA (uracil-5-)-methyltransferase [Vibrio parahaemolyticus AQ4037] Length = 98 Score = 100 bits (250), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 44/79 (55%), Positives = 60/79 (75%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTK 68 +Y++QLAEKV+RL M + VP L++F S HYRMRAEF +WH+G+DLY+IMF+Q+T+ Sbjct: 10 RYQEQLAEKVERLTDMFAPYNVPELEVFESPEQHYRMRAEFRVWHEGEDLYYIMFNQETR 69 Query: 69 ERMRIDYFMPGSLLINALM 87 E+ R+D F S LIN LM Sbjct: 70 EKYRVDQFPAASRLINDLM 88 >gi|152995281|ref|YP_001340116.1| RNA methyltransferase [Marinomonas sp. MWYL1] gi|150836205|gb|ABR70181.1| RNA methyltransferase, TrmA family [Marinomonas sp. MWYL1] Length = 440 Score = 100 bits (250), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 105/386 (27%), Positives = 171/386 (44%), Gaps = 80/386 (20%) Query: 11 EQQLAEKVDRLR-QMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69 EQQL+ K D L+ Q+ L+ P YR RA I D+ K Sbjct: 103 EQQLSAKADWLQGQLRNLITTQELETLSDTPTGYRRRARLAI-----DI--------KKG 149 Query: 70 RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDD 129 RM + + S I I + + L P L++ + ++D A V L + LL+D Sbjct: 150 RMVLGFRGKASKEI----ISIDQCVVLTPNLQSTFLLLKLKLLENDLAGV-LGHVELLED 204 Query: 130 --------------------AWRECAIRLRDALHARKYQIQLIGRANKTKICLDR----D 165 AW + A + R AL+ +Q +G+A ++ L++ D Sbjct: 205 TKGVSALFRLTSPISDELKNAWEDWAEKGRVALY---WQAPKVGKA---EVALEKMRYYD 258 Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGIN----VHMLEWVLAATKGIQGDLLELYCGNG 221 D RL + F Q NA +N V ++W+ + + + +L+L+CG G Sbjct: 259 LGDLRL---------KYHPQDFIQVNAAMNQKMVVQAMDWLNPSKQDV---ILDLFCGVG 306 Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281 NFSL LA H V+ VE+ + VEAAR N N +N+ V + + T+ + E Sbjct: 307 NFSLPLAVHAQAVIGVEVQETMVEAARENARVNGFDNLSFV---AADLTKPVNNE----- 358 Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDLS-ILSTTH 339 + + +DPPR+G + +++ P ILY+SCN +L RD +++ + Sbjct: 359 -----LFKQTITKVLLDPPRAGAFEFLDSIIKIGPTQILYVSCNASTLARDAEYLVAKGY 413 Query: 340 TIERLALFDQFPYTRHMECGVLLVRK 365 + R++L D FP T H+E +LL +K Sbjct: 414 RVLRVSLMDMFPQTSHVETMMLLQKK 439 >gi|325478688|gb|EGC81799.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Anaerococcus prevotii ACS-065-V-Col13] Length = 415 Score = 100 bits (249), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 99/375 (26%), Positives = 181/375 (48%), Gaps = 50/375 (13%) Query: 4 TLLIDQYEQQLAEKVDRLRQMM---LAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60 T++ YE QL K + ++ + + +++I SE + YR + + + G Y+ Sbjct: 78 TIMDTNYETQLKLKENLIKNALKKTCGINLEHIEILPSEKLGYRNKIKVQVDEKGRLAYN 137 Query: 61 IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIR--LEPLLRAKLFQIDYLTSQSD-QA 117 + + + + ID LL N + E + IR E + + +I ++ +SD + Sbjct: 138 ---KKSSNDLVAID----DCLLANNHIRENLPNIRKLTEDITKNLGKKIREISIRSDGEE 190 Query: 118 IVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKI-CLDRDYVDERLTVAGR 176 I+ IY + + L++ + Y I LI N KI + DY++ +L + Sbjct: 191 ILLNIYTNDEEKLYN----YLKEEYPNQVYNINLI---NGRKIMTIGNDYLNFKL----K 239 Query: 177 TLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGD--LLELYCGNGNFSLVLARHFDR 233 I++ ++ F Q +N + +E + A A K ++ D LL+L+CG+G S+ L + D Sbjct: 240 DKIFKVSKDDFYQ----VNDYQIENLYASARKYLEKDKKLLDLFCGSGISSIAL--NDDH 293 Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293 ++ +EI K ++E A+ N AN++ + K + ++K Q I + K Sbjct: 294 IVGIEINKSAIEDAKQNALANNLKDYKFISKNAKYIDQKF-------------IKKEKIK 340 Query: 294 TIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLS-ILSTTHTIERLALFDQF 350 + VDPPR+GLD + + +I+YISCNP +L RD+ + + +E++ D F Sbjct: 341 AVTVDPPRAGLDKEIIKTLTKTKIENIIYISCNPQTLARDIKRFMDRGYKLEKIKAVDMF 400 Query: 351 PYTRHMECGVLLVRK 365 P T H+E VL+ RK Sbjct: 401 PQTMHVETVVLMSRK 415 >gi|323705003|ref|ZP_08116579.1| RNA methyltransferase, TrmA family [Thermoanaerobacterium xylanolyticum LX-11] gi|323535429|gb|EGB25204.1| RNA methyltransferase, TrmA family [Thermoanaerobacterium xylanolyticum LX-11] Length = 453 Score = 100 bits (249), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 87/349 (24%), Positives = 159/349 (45%), Gaps = 35/349 (10%) Query: 35 IFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFM-PGSLLINAL--MIEMM 91 I ++P+HYR +AE+ + + + ++ E + ID M S+ +NA+ ++E Sbjct: 119 IGMADPLHYRDKAEYPLSIKNGKIEGGFYASKSHEVVGIDSCMIQSSVSVNAMKTVVEWA 178 Query: 92 ATIRL--------EPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALH 143 ++ + LR + ++ + T + +V ++ + +E RL+ + Sbjct: 179 NDYKITVYDKKTGKGFLRHVITKVGFATKE---VMVIIVANSRDIPHKKELVSRLKGKIE 235 Query: 144 ARKYQIQLIGRANKTKICLDRD---YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLE 200 K + + R+N ++ + + Y D+ +T + SF Q N + E Sbjct: 236 NLKSVVLNVNRSNGKQVMGNENIVIYGDDYITDFIGDKKFEISPLSFFQVNPVQTKVLYE 295 Query: 201 WVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN 258 L ++GD + ++YCG G S+ A+H +V +E+ +VE AR N A N VNN Sbjct: 296 KALEYAD-LKGDEIVFDVYCGIGTISIFFAKHARKVYGIEVIPDAVEDARQNAAINGVNN 354 Query: 259 VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD-DATVGMVQAYPH 317 + + +++ + + + I DPPR GLD D ++ P Sbjct: 355 AEFIAGKAEDIMIELCNK------------GLKPDVIVFDPPRKGLDKDVVEASIKMNPE 402 Query: 318 -ILYISCNPDSLCRDLSILS-TTHTIERLALFDQFPYTRHMECGVLLVR 364 I+Y+SCNP +L RDL I + +++ D FPYT H+EC VL+ R Sbjct: 403 KIIYVSCNPTTLARDLRIFEDNGYRTKKVQPVDMFPYTYHVECVVLMSR 451 >gi|160901890|ref|YP_001567471.1| RNA methyltransferase [Petrotoga mobilis SJ95] gi|160359534|gb|ABX31148.1| RNA methyltransferase, TrmA family [Petrotoga mobilis SJ95] Length = 387 Score = 100 bits (248), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 68/214 (31%), Positives = 106/214 (49%), Gaps = 22/214 (10%) Query: 154 RANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL 213 +A++ +I RDY E++ L ++ SF Q N + + L+ + D+ Sbjct: 190 KADEMEILYGRDYFYEKIL----DLTFKIGPFSFFQTNTKGTEVLYQTALSYAE--NSDV 243 Query: 214 L-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + + Y G G SL+LA +V +EI K +VEAA+ N N++NNV+ V K+F + Sbjct: 244 VYDFYSGTGTISLLLANKAKKVYGIEIIKEAVEAAKQNAILNNINNVEFVNKDVKDFVKQ 303 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCR 330 + + I VDPPR+GL + + Q + I+YISCNP +L Sbjct: 304 QSSTEKPDY-------------IVVDPPRAGLHPNLIKFIKTQQFNKIIYISCNPKTLIP 350 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 +L LS +TI L D FP+T H+E VL+ R Sbjct: 351 NLKELSDLYTISDFHLVDMFPHTDHVESVVLMTR 384 >gi|326794412|ref|YP_004312232.1| RNA methyltransferase, TrmA family [Marinomonas mediterranea MMB-1] gi|326545176|gb|ADZ90396.1| RNA methyltransferase, TrmA family [Marinomonas mediterranea MMB-1] Length = 435 Score = 99.4 bits (246), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 66/185 (35%), Positives = 100/185 (54%), Gaps = 22/185 (11%) Query: 187 FTQPNAGINVHMLE----WVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 F Q NA +N M+E W LA TK + +L+L+CG+GNFSL LAR VL VE + Sbjct: 267 FIQVNASMNEKMVEQAMRW-LAPTK--EDIVLDLFCGSGNFSLPLARRAGEVLGVEGLET 323 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302 VE AR N N ++NV+ + + + T+ + + S + + +DPPRS Sbjct: 324 MVEFARLNAQENDLDNVQFI---AADLTKPAPKV----------LKSKKVTKVLLDPPRS 370 Query: 303 GLDDATVGMVQAYP-HILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGV 360 G + +V+ P ILY+SCN +L RD +++ + + R++L + FP T H E + Sbjct: 371 GAFEFLETLVKFKPEQILYVSCNASTLARDAEYLIANGYVVSRVSLMEMFPQTAHAEAMM 430 Query: 361 LLVRK 365 LL RK Sbjct: 431 LLQRK 435 >gi|39996847|ref|NP_952798.1| RNA methyltransferase [Geobacter sulfurreducens PCA] gi|51316710|sp|Q74CC6|Y1748_GEOSL RecName: Full=Uncharacterized RNA methyltransferase GSU1748 gi|39983735|gb|AAR35125.1| RNA methyltransferase, TrmA family [Geobacter sulfurreducens PCA] gi|307634915|gb|ADI84585.2| RNA methyltransferase, TrmA family [Geobacter sulfurreducens KN400] Length = 438 Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 105/342 (30%), Positives = 152/342 (44%), Gaps = 38/342 (11%) Query: 40 PIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEM-MATIRL-- 96 P YR RA+F I G L H+ F ++ + ID P +I I + + +RL Sbjct: 119 PFGYRCRAQFKIRWSGGRL-HMGFYRRGSHYV-ID--APAECVICDPAINLTLRDLRLVL 174 Query: 97 ----EPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALH-ARKYQIQL 151 EP K+ QID T + V L+ H + D+ R H A I L Sbjct: 175 PDFSEP---DKIPQIDAATGEDGH--VLLVVHYIGDNPGRAADFFRSIQPHLASVTGIHL 229 Query: 152 -IGRANKTKICLDRD---YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AAT 206 GR + D Y L GR L F+Q N N ++ L A Sbjct: 230 QCGRKDSIMHVWGVDSLSYTVPGLGDQGRPLSLSFRRGGFSQVNYRQNRVLVSKALHLAG 289 Query: 207 KGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266 G +L+L+CGNGNFSL LA +++ VE PS++ AR N N + +V+ + + + Sbjct: 290 VGPGRRVLDLFCGNGNFSLPLASGGAQLVGVEDYGPSIDDARKNADFNGIGDVEFIAIDA 349 Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCN 324 + T+ +R E F T+ +DPPR+G DA VG V A I+Y+SC+ Sbjct: 350 ADGTRRLRAAGE------------HFDTVILDPPRTGARDA-VGEVAILAPERIVYVSCD 396 Query: 325 PDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRK 365 P +L RDL +L + + D FP T H+E LL+R Sbjct: 397 PPTLGRDLGVLRKAGYRVVGSHGVDMFPQTYHIESVTLLIRS 438 >gi|304439903|ref|ZP_07399797.1| 23S rRNA (uracil-5-)-methyltransferase [Peptoniphilus duerdenii ATCC BAA-1640] gi|304371642|gb|EFM25254.1| 23S rRNA (uracil-5-)-methyltransferase [Peptoniphilus duerdenii ATCC BAA-1640] Length = 415 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 53/154 (34%), Positives = 82/154 (53%), Gaps = 16/154 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++LY G G SL +A + V+AVE + SVE AR N N + NV+ R ++ T+ Sbjct: 275 VMDLYSGIGTISLKMAEQVESVIAVESFEGSVEIARKNAELNGIENVEFARGKVEDLTEK 334 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGL-DDATVGMVQAYPH-ILYISCNPDSLCR 330 + + Y + +DPPR+G ++A +++ P I Y+SCNP +L R Sbjct: 335 LEK--------------YTVNKVLLDPPRAGAKEEALRTIIKLNPERITYVSCNPSTLAR 380 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 DL ILS + IE++ D F ++ H EC LL R Sbjct: 381 DLQILSEKYKIEKIIPVDMFSHSSHCECVALLTR 414 >gi|323491189|ref|ZP_08096375.1| 23S rRNA m(5)U1939 methyltransferase [Vibrio brasiliensis LMG 20546] gi|323314557|gb|EGA67635.1| 23S rRNA m(5)U1939 methyltransferase [Vibrio brasiliensis LMG 20546] Length = 439 Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 64/198 (32%), Positives = 99/198 (50%), Gaps = 25/198 (12%) Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFD 232 AG T+ + N+F Q N +N M+E L+ + + D +L+L+CG GNFSL +A+ Sbjct: 259 AGATIPFE--PNNFIQVNQKVNQAMVEQALSWLQLTKQDRVLDLFCGLGNFSLPIAKQVT 316 Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292 V VE VE A YN N + N F QA E +L + +F Sbjct: 317 SVTGVEGVDAMVEKATYNAKVNQIENA--------SFYQANLEEDVSGQLWAAE----KF 364 Query: 293 KTIFVDPPRSGLDDATVGMVQ-----AYPHILYISCNPDSLCRD-LSILSTTHTIERLAL 346 I +DP R+G G+++ ++Y+SCNP +L RD S+LS + +++L + Sbjct: 365 DKILLDPARAG----ASGIIEQISALGASRVVYVSCNPATLARDSQSLLSQGYKLQKLGM 420 Query: 347 FDQFPYTRHMECGVLLVR 364 D FP+T H+E L V+ Sbjct: 421 LDMFPHTSHLESMALFVK 438 >gi|94967169|ref|YP_589217.1| (Uracil-5)-methyltransferase [Candidatus Koribacter versatilis Ellin345] gi|94549219|gb|ABF39143.1| 23S rRNA m(5)U-1939 methyltransferase [Candidatus Koribacter versatilis Ellin345] Length = 441 Score = 97.1 bits (240), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 99/377 (26%), Positives = 171/377 (45%), Gaps = 43/377 (11%) Query: 9 QYEQQLAEKVDRLRQMM-----LAFQVPNLQIFRSEPIHYRMRAEFHIWHDGD-DLYHIM 62 QY +Q+ K L + + L + P +Q +EP+ YR R + H + + Sbjct: 87 QYAEQVKAKAQILEETLSRTAKLKLEQP-IQTHAAEPLGYRNRTRMRVSHVPQFAIGYYR 145 Query: 63 FDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122 F + + ++ S LIN ++ + A R E + R ++ ++ + + D ++ + Sbjct: 146 FGSHS--LLPVEQCPISSPLINRVLQGLWAAGREERIAR-EVREVQFFANHDDSRLLLEL 202 Query: 123 Y--HRLLDDAWRECAIRLRDAL----HARKYQIQLIGRANKTKICLDRDYVDERLTVAGR 176 Y H DA + LR + ++ + + L R + R Sbjct: 203 YIDHHAEPDALQPMIETLRGKMPEIAGVAVFRGAPADDSEDQRAPLTRAKASPGVFFGER 262 Query: 177 TLIYRQIENSFTQPNAG----INVHML-EWVLAATKGIQGDL-LELYCGNGNFSLVLARH 230 +L Y+ + + Q +AG N +L E T+G G L L+LY G G FSL LA Sbjct: 263 SLRYKTKRHEY-QVSAGAFFQTNRFLLDEMAETVTRGHSGKLALDLYSGGGFFSLPLADQ 321 Query: 231 FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY 290 F++V+AVE + S + ++ N + NVK VR ++EF + R+ Sbjct: 322 FEKVIAVEASGHS----QADLKTNALRNVKAVRSGTEEFLRGEGRQ-------------L 364 Query: 291 RFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSIL-STTHTIERLALF 347 R + VDPPR+GL + T ++ + + Y+SC+P +L RD+ +L + +E + LF Sbjct: 365 RPDLVVVDPPRAGLGEKTSHLIGRMSVGRVTYVSCDPATLSRDMKVLVESGFRVEEVHLF 424 Query: 348 DQFPYTRHMECGVLLVR 364 D FP T H+E + LVR Sbjct: 425 DLFPQTYHLESVLHLVR 441 >gi|171913271|ref|ZP_02928741.1| SAM-dependent methyltransferase related to tRNA (uracil-5-)-methyltransferase [Verrucomicrobium spinosum DSM 4136] Length = 408 Score = 96.7 bits (239), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 57/156 (36%), Positives = 89/156 (57%), Gaps = 16/156 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L++ YCG+G F+L ARHF++V VEI++ +V A +N N++ N K + S+ Sbjct: 263 LIDAYCGSGLFALACARHFEQVNGVEISESAVAKATHNARINNITNAKFIAGSA------ 316 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY-PH-ILYISCNPDSLCR 330 ER F + S +I VDPPR+G + + + AY PH ++Y+SCNP + R Sbjct: 317 ---ERIFAGVLLPAAES----SIIVDPPRAGCGEDFLHQLFAYGPHNVVYVSCNPATQMR 369 Query: 331 DL-SILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 DL + + +E++ FD FP TRH+EC + L +K Sbjct: 370 DLVKFVEAGYILEKVQPFDLFPQTRHLECVMTLTKK 405 >gi|268591277|ref|ZP_06125498.1| hypothetical protein PROVRETT_07550 [Providencia rettgeri DSM 1131] gi|291313252|gb|EFE53705.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Providencia rettgeri DSM 1131] Length = 443 Score = 96.7 bits (239), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 94/361 (26%), Positives = 153/361 (42%), Gaps = 49/361 (13%) Query: 22 RQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSL 81 R+ L VP+ + EP YR RA + + +M +Q++ +D Sbjct: 114 RETSLDISVPS--VISGEPYGYRRRARLGLQYQPKSKNVVMGFRQSQSNTLVD------- 164 Query: 82 LINALMIEMMATIRLEPLL--------RAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRE 133 + N ++ I L+PL +AKL ++ + ++D + LI R L Sbjct: 165 IKNCPILSPDLDILLKPLSECINQLSNKAKLGHVELI--RADNCKIVLI--RYLTPFSLS 220 Query: 134 CAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAG 193 +L D + I L G + L + VAG L + + +F Q N Sbjct: 221 DTQKLSDFENQHGVSIWLAGNDENLQ-ALSPNSPQPEYQVAGELLKFNPL--NFIQVNGQ 277 Query: 194 INVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIA 252 +N M+E LA D +L+L+CG GNF+L +AR V+ VE + VE AR N Sbjct: 278 VNQQMVEQALAWLDLNSEDRVLDLFCGMGNFTLPIARLVKSVVGVEGVENLVEQARNNAQ 337 Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHS-----YRFKTIFVDPPRSGLDDA 307 N + N +N + IH+ + F + +DP R+G Sbjct: 338 LNTICNATF-----------------YNENLEAQIHTQPWAVHGFNKVLLDPARAGAAGV 380 Query: 308 TVGMVQAYPH-ILYISCNPDSLCRDLSI-LSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 +++ P I+Y+SCNP +L RD + L + + +L + D FP T H+E L +R+ Sbjct: 381 MEHLIKLMPEKIVYVSCNPTTLARDSKVLLDGGYQLLQLRMLDMFPQTSHLESMALFIRR 440 Query: 366 P 366 P Sbjct: 441 P 441 >gi|119471910|ref|ZP_01614218.1| 23S rRNA (uracil-5)-methyltransferase [Alteromonadales bacterium TW-7] gi|119445283|gb|EAW26573.1| 23S rRNA (uracil-5)-methyltransferase [Alteromonadales bacterium TW-7] Length = 441 Score = 96.7 bits (239), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 108/380 (28%), Positives = 174/380 (45%), Gaps = 73/380 (19%) Query: 12 QQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERM 71 +QL EK +Q L +Q P L S HYR A + MFD+ K +M Sbjct: 109 EQLFEKF--AKQTNLNWQAPLL----SSSTHYRRSARIAV----------MFDKAAK-KM 151 Query: 72 RIDYFMPGS---LLINALMI-----EMMATIRLEPLLRAK-LFQIDYLT-SQSDQAIVTL 121 RI Y GS + IN + E + T+ E + K L I +L QS+ + Sbjct: 152 RIGYRASGSKNIVSINKCAVLTDAYETVFTLFDELINHNKSLHSISHLQLCQSETHNFVV 211 Query: 122 IYH-RLLDDAWRECAIRLRDALHARKYQIQLIGRAN---KTKICLDRDYVDERLTVAGRT 177 I H + + D + I+ A KY + ++ T I + Y+DE G Sbjct: 212 IRHTKAISDEAKAVVIK---ACTPYKYSVIWQSESDVIDHTNITMPYYYLDEFKLKFGFG 268 Query: 178 LIYRQIENSFTQPNAGINVHML----EWVLAATKGIQGD--LLELYCGNGNFSLVLARHF 231 L ++F Q NA +N ML +W+ G+ G+ +L+L+CG GNFSLVLA+ Sbjct: 269 L------DNFIQVNAQVNQAMLKQSVDWL-----GLSGNENILDLFCGIGNFSLVLAKQA 317 Query: 232 DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291 V+ +E +V A N N ++N + + TQ ++ + FN K++D+ Sbjct: 318 KTVIGIEGVASAVAMAEQNAQTNSISN---AQFHCFDLTQKIQNAQWFN--KNLDV---- 368 Query: 292 FKTIFVDPPRSGLDDATVGMVQAYP-----HILYISCNPDSLCRDLSILS-TTHTIERLA 345 + +DP R+G + +++ P ILY+SC+P +L RD +I+S + ++ Sbjct: 369 ---LVLDPSRTG----AMAILEQLPLKQFKTILYVSCDPVTLARDSAIISQAGFELNKIG 421 Query: 346 LFDQFPYTRHMECGVLLVRK 365 L + FP+T H+E L R+ Sbjct: 422 LMNMFPHTGHIETMALFQRR 441 >gi|317473452|ref|ZP_07932746.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Anaerostipes sp. 3_2_56FAA] gi|316899102|gb|EFV21122.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Anaerostipes sp. 3_2_56FAA] Length = 458 Score = 96.3 bits (238), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 59/153 (38%), Positives = 87/153 (56%), Gaps = 14/153 (9%) Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274 +LYCG G SL LA+ +V VEI K ++E AR N NH++NV+ ++E + Sbjct: 315 DLYCGIGTISLFLAQKAKQVYGVEIVKEAIEDARLNAEMNHMDNVQFFVGKAEE---VLP 371 Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCRDL 332 RE E N + I VDPPR G D A + MV+ P I+Y+SC+P +L RDL Sbjct: 372 REYEKNGV--------YADVIVVDPPRKGCDRALLDTMVKMGPERIVYVSCDPGTLARDL 423 Query: 333 SILST-THTIERLALFDQFPYTRHMECGVLLVR 364 +L +++E++A+ DQF +T H+E LL + Sbjct: 424 KVLGGEGYSVEKVAVVDQFGHTGHVETVCLLSK 456 >gi|308067596|ref|YP_003869201.1| RNA methyltransferase [Paenibacillus polymyxa E681] gi|305856875|gb|ADM68663.1| Hypothetical RNA methyltransferase [Paenibacillus polymyxa E681] Length = 534 Score = 96.3 bits (238), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 69/213 (32%), Positives = 102/213 (47%), Gaps = 26/213 (12%) Query: 166 YVDERLTVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGD--LLE 215 + DE + GR +IY I N SF Q N + +L G+ G +++ Sbjct: 331 FGDETRVLWGRDVIYDYIGNVQFAISARSFYQVNP-VQTEVLYGKTVEYAGLTGKETVID 389 Query: 216 LYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275 YCG G SL LA+H D+V VEI K +++ AR N N + NVK +S++ A + Sbjct: 390 AYCGIGTISLFLAQHADQVYGVEIVKEAIDDARSNALLNEMRNVKFEVGASEDVIPAWKE 449 Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYPH-ILYISCNPDSLCRDLS 333 + I VDPPR G D +G + + P ++Y+SCNP +L RDL Sbjct: 450 Q------------GITADVIVVDPPRKGCDPRLLGTILEMKPERVVYVSCNPSTLARDLR 497 Query: 334 ILS-TTHTIERLALFDQFPYTRHMECGVLLVRK 365 IL ++ + D FP+T H+E L+VR Sbjct: 498 ILEDGGYSTVEVQPVDMFPHTTHVENVALIVRS 530 >gi|118580203|ref|YP_901453.1| RNA methyltransferase [Pelobacter propionicus DSM 2379] gi|118502913|gb|ABK99395.1| 23S rRNA m(5)U-1939 methyltransferase [Pelobacter propionicus DSM 2379] Length = 446 Score = 96.3 bits (238), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 99/340 (29%), Positives = 145/340 (42%), Gaps = 41/340 (12%) Query: 43 YRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSL-LINALMIEMMATIRLEPLLR 101 YR R +F + G +L + Q T P +L +IN ++ + + P Sbjct: 126 YRSRVQFKLHGAGPNLRIGFYRQGTHFVEDAGQGCPIALPVINRILGSLREMLPAFPD-P 184 Query: 102 AKLFQIDYLTSQSDQAIVTLIY----HRLLDDAWRECAIRLRDALH-----ARKYQIQLI 152 K+ QI+ L A+V + Y H+ +RE A +L A RK +Q + Sbjct: 185 TKIPQIN-LECAEKGAVVIVNYIGDDHQGAKAFFRERAAQLEQATALYLQTGRKSTLQKV 243 Query: 153 GRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD 212 + L E T +L YR F Q NA N +L V + D Sbjct: 244 FGDD----LLQYSQEGESSTAPACSLTYR--PGGFAQVNAAQNSALLRLVREFADCRRDD 297 Query: 213 -LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271 +L+LYCGNGNFSL LAR V +E S+ AAR+N N + NV+ + + Sbjct: 298 QILDLYCGNGNFSLPLARGVAAVTGIEEYGDSIAAARHNARLNGITNVEFICADAAAGAG 357 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP-----HILYISCNPD 326 + + RF TI +DPPRSG D +++ P I+YISC+P Sbjct: 358 KLMGD------------GRRFPTIILDPPRSGAAD----LLEHIPRLGADKIIYISCDPS 401 Query: 327 SLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRK 365 +L RD +L +T+ D FP T H+E LL R+ Sbjct: 402 TLARDCGVLFGKGYTVVSSVPVDMFPQTFHLESVTLLRRR 441 >gi|282882595|ref|ZP_06291214.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Peptoniphilus lacrimalis 315-B] gi|281297570|gb|EFA90047.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Peptoniphilus lacrimalis 315-B] Length = 518 Score = 96.3 bits (238), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 52/154 (33%), Positives = 81/154 (52%), Gaps = 14/154 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + +LY G G SL +A + L VEI + ++E AR N N + + + S+E + Sbjct: 284 IADLYSGVGTLSLEIASRKAQTLGVEIVEEAIEDARINAQKNKLQ-ARFICGKSEEILEK 342 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCR 330 ++ + + + I VDPPR G+D V + +Y I+YISCNP +L R Sbjct: 343 IQTDEKI-----------KMDKILVDPPRKGMDKKLVDYLNKNSYEKIVYISCNPATLAR 391 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 DL IL + +E++ +FD FPYT H+E LL + Sbjct: 392 DLKILKEKYKVEKVEIFDLFPYTSHVEVITLLSK 425 >gi|304316267|ref|YP_003851412.1| RNA methyltransferase, TrmA family [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302777769|gb|ADL68328.1| RNA methyltransferase, TrmA family [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 452 Score = 95.9 bits (237), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 57/161 (35%), Positives = 86/161 (53%), Gaps = 17/161 (10%) Query: 209 IQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266 ++GD ++++YCG G S+ A++ V +E+ +VE A+ N A N +NN + + Sbjct: 303 LKGDEIVIDVYCGIGTISIFFAKYVKHVYGIEVVSDAVEDAKRNAAINGINNADFIAGKA 362 Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD-DATVGMVQAYPH-ILYISCN 324 + M+R + + DI I +DPPR GLD D V+ P I+YISCN Sbjct: 363 E---HVMKRLYKEGLMPDI---------IILDPPRRGLDKDVVDECVKMNPQKIIYISCN 410 Query: 325 PDSLCRDLSILS-TTHTIERLALFDQFPYTRHMECGVLLVR 364 P +L RDL I + E++ D FPYT H+EC VL+ R Sbjct: 411 PTTLARDLRIFEDNGYKTEKVQPVDMFPYTYHVECVVLMSR 451 >gi|167747772|ref|ZP_02419899.1| hypothetical protein ANACAC_02493 [Anaerostipes caccae DSM 14662] gi|167653134|gb|EDR97263.1| hypothetical protein ANACAC_02493 [Anaerostipes caccae DSM 14662] Length = 459 Score = 95.9 bits (237), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 76/207 (36%), Positives = 105/207 (50%), Gaps = 27/207 (13%) Query: 173 VAGRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGN 222 V G IY I N SF Q N + E L G+ GD + +LYCG G Sbjct: 264 VYGPAYIYDYIGNVKYQIGPLSFFQVNPRQTKVLYEKALEYA-GLCGDETVWDLYCGIGT 322 Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282 SL LA+ +V VEI K ++E AR N N ++NVK ++E + RE E N + Sbjct: 323 ISLFLAQKAKQVYGVEIVKEAIEDARLNARMNRMDNVKFFVGKAEE---VLPREYEKNGV 379 Query: 283 -KDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCRDLSILST-T 338 D+ I VDPPR G D A + MV+ P I+Y+SC+P +L RDL +L Sbjct: 380 YADV---------IVVDPPRKGCDKALLDTMVKMGPERIVYVSCDPGTLARDLKVLGGEG 430 Query: 339 HTIERLALFDQFPYTRHMECGVLLVRK 365 + + ++A+ DQF +T H+E LL RK Sbjct: 431 YEVRKVAVVDQFGHTGHVETVALLKRK 457 >gi|258508017|ref|YP_003170768.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus rhamnosus GG] gi|257147944|emb|CAR86917.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus rhamnosus GG] gi|259649345|dbj|BAI41507.1| RNA methyltransferase [Lactobacillus rhamnosus GG] Length = 455 Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 72/218 (33%), Positives = 105/218 (48%), Gaps = 26/218 (11%) Query: 151 LIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ 210 ++GR K+K RDY+ ++L G + SF Q N I +L G+ Sbjct: 253 ILGR--KSKTIYGRDYLLDKLL--GSEFQISPV--SFYQVNP-IQTEVLYTKAIEAAGLT 305 Query: 211 GD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268 G +++ Y G G SL +ARH +V VE+ + +V A N A NH+ NV Sbjct: 306 GKETVIDAYSGIGTISLTMARHAKQVYGVEVVESAVHDAEANAARNHIKNVTF------- 358 Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA---TVGMVQAYPHILYISCNP 325 + + E + KD D+ + VDPPR GLD VG ++ P I+YISCNP Sbjct: 359 --EVGKAEDVMQKWKDADLP---VDVLMVDPPRKGLDKTFIDAVGYMKP-PKIVYISCNP 412 Query: 326 DSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLL 362 +L RDL +L+ +T + D FP T+H+E LL Sbjct: 413 ATLARDLQLLAAFGYTAKETQPVDMFPQTQHIESVTLL 450 >gi|213612917|ref|ZP_03370743.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 55 Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 41/55 (74%), Positives = 47/55 (85%) Query: 311 MVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 MVQAYP ILYISCNP++LC++L LS THT+ RLALFDQFPYT HMECGVLL + Sbjct: 1 MVQAYPRILYISCNPETLCKNLETLSQTHTVSRLALFDQFPYTHHMECGVLLTAR 55 >gi|317132473|ref|YP_004091787.1| RNA methyltransferase, TrmA family [Ethanoligenens harbinense YUAN-3] gi|315470452|gb|ADU27056.1| RNA methyltransferase, TrmA family [Ethanoligenens harbinense YUAN-3] Length = 453 Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 56/156 (35%), Positives = 84/156 (53%), Gaps = 15/156 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 LL+LYCG G L +A R++ VE+ +V A+ N A N + N + E T Sbjct: 310 LLDLYCGVGTIGLSMAGAVGRLIGVEVVPDAVADAKRNAAGNGIENADFFCADAGEATVR 369 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330 ++++ D+ + VDPPR GLD A V +VQ P ++YISCNP++L R Sbjct: 370 LQQQ---GLAPDV---------VVVDPPRKGLDAAAVTAVVQMAPSRVVYISCNPETLAR 417 Query: 331 DLSILS-TTHTIERLALFDQFPYTRHMECGVLLVRK 365 DL++ + + RL +D FP T H+EC LLV++ Sbjct: 418 DLTLFAEEGYVCTRLRPYDLFPRTAHVECCALLVKR 453 >gi|260893156|ref|YP_003239253.1| RNA methyltransferase, TrmA family [Ammonifex degensii KC4] gi|260865297|gb|ACX52403.1| RNA methyltransferase, TrmA family [Ammonifex degensii KC4] Length = 436 Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 89/337 (26%), Positives = 148/337 (43%), Gaps = 34/337 (10%) Query: 40 PIHYRMRAEFHI-WHDGDDLYHIMFDQQTKERMRID----YFMPGSLLINALMIEMMATI 94 P HYR + H+ W + + RID Y + G L NAL + I Sbjct: 122 PWHYRNKVRLHVAWEGRKPVLGLYAPSSHVIGHRIDRSPCYILDGQL--NALARVLAGLI 179 Query: 95 RLEPLLRAKLFQIDY-LTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARK--YQIQL 151 + + A L + L + + + +V L W+ RL D L A + Sbjct: 180 KKHAEMLAGLTAVSLRLAAATGETMVVLEGASEHYSRWK----RLVDELTAAVPVTTVVR 235 Query: 152 IGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQ 210 +G K ++ ++ + L L +R SF Q N + VL A+ + Sbjct: 236 VGARGKEEVLYGEGHITDSLD----GLSFRLSALSFYQVNPVQTSRLYRKVLEYASLSGR 291 Query: 211 GDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270 +++ YCG G +L LAR +V+ +EI+ +V A N A N +++V V+ +++E Sbjct: 292 ERVIDAYCGVGTITLFLARKAAQVIGIEISPEAVALASVNAAQNGLSHVSFVKGAAEEV- 350 Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQA-YPHILYISCNPDSL 328 L ++ F + +DPPR G+ A + +V+A P ++Y+SCNP +L Sbjct: 351 -----------LPELLAREGMFDLVVLDPPRQGVKQAALESLVRAQVPRVIYVSCNPATL 399 Query: 329 CRDLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364 RDL LS + ++ + D FP+T H+EC L R Sbjct: 400 ARDLGFLSAQGYRVQEVQPVDMFPHTYHVECVAYLCR 436 >gi|258622336|ref|ZP_05717361.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio mimicus VM573] gi|258585352|gb|EEW10076.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio mimicus VM573] Length = 440 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 62/189 (32%), Positives = 97/189 (51%), Gaps = 21/189 (11%) Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAK 241 + N F Q N +N M+E L + + D +L+L+CG GNF+L LA+ V+ VE + Sbjct: 266 LPNHFIQVNRAVNQQMVEQALNWLEVNKQDRVLDLFCGLGNFTLPLAKQAQDVVGVEGVE 325 Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY---RFKTIFVD 298 V+ A +N N +NNV F QA N +D+ S+ +F + +D Sbjct: 326 EMVQHATHNAKLNQINNVA--------FYQA-------NLEQDMTNASWAQQKFAKVLLD 370 Query: 299 PPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRD-LSILSTTHTIERLALFDQFPYTRHM 356 P R+G + + ++Y+SCNP +L RD S+LS +E+L + D FP+T H+ Sbjct: 371 PARAGAEGIVDQLAALGAERVVYVSCNPATLARDSQSLLSQGFRLEKLGMLDMFPHTSHL 430 Query: 357 ECGVLLVRK 365 E L V+K Sbjct: 431 ESMALFVKK 439 >gi|310640376|ref|YP_003945134.1| RNA methyltransferase, trma family [Paenibacillus polymyxa SC2] gi|309245326|gb|ADO54893.1| RNA methyltransferase, TrmA family [Paenibacillus polymyxa SC2] Length = 585 Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 70/213 (32%), Positives = 102/213 (47%), Gaps = 26/213 (12%) Query: 166 YVDERLTVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGD--LLE 215 + DE + GR +IY I N SF Q N + +L G+ G +++ Sbjct: 385 FGDETRVLWGRDVIYDYIGNVQFAISARSFYQVNP-VQTEVLYSKTVEYAGLTGKETVID 443 Query: 216 LYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275 YCG G SL LA+H D+V VEI K +++ AR N N + NVK +S++ A + Sbjct: 444 AYCGIGTISLFLAQHADQVYGVEIVKEAIDDARSNALLNEMRNVKFEVGASEDVIPAWKE 503 Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYPH-ILYISCNPDSLCRDLS 333 + I VDPPR G D + + + P ++Y+SCNP +L RDL Sbjct: 504 Q------------GITADVIVVDPPRKGCDPRLLDTILEMKPERVVYVSCNPSTLARDLR 551 Query: 334 ILS-TTHTIERLALFDQFPYTRHMECGVLLVRK 365 IL ++ + D FP+T H+E LLVRK Sbjct: 552 ILEDGGYSTVEVQPVDMFPHTVHVESVALLVRK 584 >gi|227484668|ref|ZP_03914984.1| TrmA family RNA methyltransferase [Anaerococcus lactolyticus ATCC 51172] gi|227237388|gb|EEI87403.1| TrmA family RNA methyltransferase [Anaerococcus lactolyticus ATCC 51172] Length = 417 Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 86/381 (22%), Positives = 166/381 (43%), Gaps = 58/381 (15%) Query: 4 TLLIDQYEQQLAEKVDRLRQMM---LAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60 T++ +YE Q+ K + + + ++++ +++I S+ + YR + + DG Y+ Sbjct: 78 TIMDIKYENQIQIKKNLILSALAKSTSYKLEDIEIIPSKELRYRNKIRLQVEKDGRLAYN 137 Query: 61 IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIR-----LEPLLRAKLFQIDYLTSQSD 115 + ++ LL+ + E + I + + + +I T+ +D Sbjct: 138 KSYSNDL-------VYIKDCLLVRENIGENLGKIEEITKDISEKFKGAIKEITVRTNGTD 190 Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRAN---KTKICLDRDYVDERLT 172 I L D E +++ + K+ I +IG+ N K L+ D+ Sbjct: 191 ------IMLNLDLDNNNEPIAYIKEKYSSSKFFINIIGKENINISGKDFLEYKICDKTFR 244 Query: 173 VAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD---LLELYCGNGNFSLVLAR 229 ++G N F Q +N +E + K + G +L+LYCG+ S+ + Sbjct: 245 ISG---------NDFYQ----VNDFQIENLYGQAKKLLGSGKKVLDLYCGSATSSIAI-- 289 Query: 230 HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHS 289 + DR++ VEI K +++ A+ N N + + K + ++K + I Sbjct: 290 NGDRLVGVEINKNAIQDAKINAEINDLKDFKFIAKNAKYIDEKF-------------IKK 336 Query: 290 YRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST-THTIERLAL 346 + ++ VDPPR+GLD + + I+YISCNP +L RD++ + +E++ Sbjct: 337 EKIDSLIVDPPRAGLDKDLIKSIGKSGLKEIIYISCNPQTLARDINRFEKEGYKLEKIKA 396 Query: 347 FDQFPYTRHMECGVLLVRKPS 367 D FP T H+EC L+ R S Sbjct: 397 VDMFPQTMHVECIALIQRVKS 417 >gi|310827128|ref|YP_003959485.1| RNA methyltransferase [Eubacterium limosum KIST612] gi|308738862|gb|ADO36522.1| RNA methyltransferase [Eubacterium limosum KIST612] Length = 446 Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 61/185 (32%), Positives = 94/185 (50%), Gaps = 18/185 (9%) Query: 185 NSFTQPNAGINVHMLEWV--LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 NSF Q N + + V +A G + L +LYCG G L LAR RV +EI + Sbjct: 273 NSFFQVNTRQTKVLYDLVKRMATLTGAE-TLFDLYCGTGTIGLYLAREAARVYGIEIVEN 331 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302 +V A+ N N + N++ ++ S E E +L + +H I +DPPR Sbjct: 332 AVLDAQENAERNQIKNIRFIQGKS---------ETEAPKLAEEGVHP---DVIVLDPPRK 379 Query: 303 GLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECG 359 G D A + M++ + P ++Y+SCNP +L RDL IL + ++ + D FP T H+E Sbjct: 380 GCDPALLEMIENLSVPKVVYVSCNPSTLARDLKILREYGYQVQEVQPVDLFPGTGHVETV 439 Query: 360 VLLVR 364 VL+ + Sbjct: 440 VLMSK 444 >gi|191638003|ref|YP_001987169.1| tRNA (Uracil-5-)-methyltransferase [Lactobacillus casei BL23] gi|190712305|emb|CAQ66311.1| tRNA (Uracil-5-)-methyltransferase [Lactobacillus casei BL23] gi|327382080|gb|AEA53556.1| 23S rRNA (Uracil-5-)-methyltransferase RumA [Lactobacillus casei LC2W] Length = 457 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 61/179 (34%), Positives = 90/179 (50%), Gaps = 20/179 (11%) Query: 186 SFTQPNAGINVHMLEWVLAATKGIQG--DLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 SF Q N + +L G+ G ++++ Y G G SL +ARH V VE+ +P+ Sbjct: 285 SFYQVNP-VQTEVLYKKAIEAAGLTGKENVIDAYSGIGTISLTMARHAKHVYGVEVVEPA 343 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 V AR N NH++NV ++E Q R KD + + VDPPR G Sbjct: 344 VRDARANAVRNHIDNVTFEVGKAEEVIQ---------RWKD---NELPVDVLMVDPPRKG 391 Query: 304 LDDA---TVGMVQAYPHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMEC 358 LD + VG ++ P I+Y+SCNP +L RDL +L+ +T + D FP T+H+E Sbjct: 392 LDKSFIDAVGYMKP-PKIVYVSCNPATLARDLQLLAAFGYTAKETQPVDMFPQTQHIES 449 >gi|323499990|ref|ZP_08104946.1| 23S rRNA m(5)U1939 methyltransferase [Vibrio sinaloensis DSM 21326] gi|323314956|gb|EGA68011.1| 23S rRNA m(5)U1939 methyltransferase [Vibrio sinaloensis DSM 21326] Length = 439 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 67/196 (34%), Positives = 99/196 (50%), Gaps = 21/196 (10%) Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVL---AATKGIQGDLLELYCGNGNFSLVLARH 230 AG T+ + N+F Q N +N M+E L A K Q +L+L+CG GNFSL +A+ Sbjct: 259 AGVTIPFE--PNNFIQVNQQVNQSMVEQALDWLALDK--QDRVLDLFCGLGNFSLPMAKR 314 Query: 231 FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY 290 RV+ VE VE AR N NH+ N F QA E+E + S Sbjct: 315 VKRVVGVEGVDAMVEKARTNAELNHLGNA--------HFFQA-NLEQE---MSGQPWASE 362 Query: 291 RFKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRD-LSILSTTHTIERLALFD 348 +F I +DP R+G + + ++Y+SCNP +L RD S+L+ +++L + D Sbjct: 363 KFDKILLDPARAGASGIVEQLSELGATRVVYVSCNPATLARDSQSLLNQGFHLKKLGMLD 422 Query: 349 QFPYTRHMECGVLLVR 364 FP+T H+E L V+ Sbjct: 423 MFPHTSHLESMALFVK 438 >gi|327385224|gb|AEA56698.1| 23S rRNA (Uracil-5-)-methyltransferase RumA [Lactobacillus casei BD-II] Length = 454 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 61/179 (34%), Positives = 90/179 (50%), Gaps = 20/179 (11%) Query: 186 SFTQPNAGINVHMLEWVLAATKGIQG--DLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 SF Q N + +L G+ G ++++ Y G G SL +ARH V VE+ +P+ Sbjct: 282 SFYQVNP-VQTEVLYKKAIEAAGLTGKENVIDAYSGIGTISLTMARHAKHVYGVEVVEPA 340 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 V AR N NH++NV ++E Q R KD + + VDPPR G Sbjct: 341 VRDARANAVRNHIDNVTFEVGKAEEVIQ---------RWKD---NELPVDVLMVDPPRKG 388 Query: 304 LDDA---TVGMVQAYPHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMEC 358 LD + VG ++ P I+Y+SCNP +L RDL +L+ +T + D FP T+H+E Sbjct: 389 LDKSFIDAVGYMKP-PKIVYVSCNPATLARDLQLLAAFGYTAKETQPVDMFPQTQHIES 446 >gi|239631838|ref|ZP_04674869.1| conserved hypothetical protein [Lactobacillus paracasei subsp. paracasei 8700:2] gi|239526303|gb|EEQ65304.1| conserved hypothetical protein [Lactobacillus paracasei subsp. paracasei 8700:2] Length = 453 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 61/179 (34%), Positives = 90/179 (50%), Gaps = 20/179 (11%) Query: 186 SFTQPNAGINVHMLEWVLAATKGIQG--DLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 SF Q N + +L G+ G ++++ Y G G SL +ARH V VE+ +P+ Sbjct: 282 SFYQVNP-VQTEVLYKKAIEAAGLTGKENVIDAYSGIGTISLTMARHAKHVYGVEVVEPA 340 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 V AR N NH++NV ++E Q R KD + + VDPPR G Sbjct: 341 VRDARANAVRNHIDNVTFEVGKAEEVIQ---------RWKD---NELPVDVLMVDPPRKG 388 Query: 304 LDDA---TVGMVQAYPHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMEC 358 LD + VG ++ P I+Y+SCNP +L RDL +L+ +T + D FP T+H+E Sbjct: 389 LDKSFIDAVGYMKP-PKIVYVSCNPATLARDLQLLAAFGYTAKETQPVDMFPQTQHIES 446 >gi|227535460|ref|ZP_03965509.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227186870|gb|EEI66937.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 457 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 61/179 (34%), Positives = 90/179 (50%), Gaps = 20/179 (11%) Query: 186 SFTQPNAGINVHMLEWVLAATKGIQG--DLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 SF Q N + +L G+ G ++++ Y G G SL +ARH V VE+ +P+ Sbjct: 285 SFYQVNP-VQTEVLYKKAIEAAGLTGKENVIDAYSGIGTISLTMARHAKHVYGVEVVEPA 343 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 V AR N NH++NV ++E Q R KD + + VDPPR G Sbjct: 344 VRDARANAVRNHIDNVTFEVGKAEEVIQ---------RWKD---NELPVDVLMVDPPRKG 391 Query: 304 LDDA---TVGMVQAYPHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMEC 358 LD + VG ++ P I+Y+SCNP +L RDL +L+ +T + D FP T+H+E Sbjct: 392 LDKSFIDAVGYMKP-PKIVYVSCNPATLARDLQLLAAFGYTAKETQPVDMFPQTQHIES 449 >gi|301066110|ref|YP_003788133.1| tRNA (uracil-5-)-methyltransferase-like protein [Lactobacillus casei str. Zhang] gi|300438517|gb|ADK18283.1| tRNA (uracil-5-)-methyltransferase related enzyme [Lactobacillus casei str. Zhang] Length = 454 Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 61/179 (34%), Positives = 90/179 (50%), Gaps = 20/179 (11%) Query: 186 SFTQPNAGINVHMLEWVLAATKGIQG--DLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 SF Q N + +L G+ G ++++ Y G G SL +ARH V VE+ +P+ Sbjct: 282 SFYQVNP-VQTEVLYKKAIEAAGLTGKKNVIDAYSGIGTISLTMARHAKHVYGVEVVEPA 340 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 V AR N NH++NV ++E Q R KD + + VDPPR G Sbjct: 341 VRDARANAVRNHIDNVTFEVGKAEEVIQ---------RWKD---NELPVDVLMVDPPRKG 388 Query: 304 LDDA---TVGMVQAYPHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMEC 358 LD + VG ++ P I+Y+SCNP +L RDL +L+ +T + D FP T+H+E Sbjct: 389 LDKSFIDAVGYMKP-PKIVYVSCNPATLARDLQLLAAFGYTAKETQPVDMFPQTQHIES 446 >gi|323705906|ref|ZP_08117477.1| RNA methyltransferase, TrmA family [Thermoanaerobacterium xylanolyticum LX-11] gi|323534704|gb|EGB24484.1| RNA methyltransferase, TrmA family [Thermoanaerobacterium xylanolyticum LX-11] Length = 452 Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 64/220 (29%), Positives = 110/220 (50%), Gaps = 31/220 (14%) Query: 154 RANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD- 212 + K ++ RDY+ E + L ++ SF Q N+ E + + + GD Sbjct: 254 KCEKLEVLYGRDYIMEEIL----GLKFKISAFSFFQTNS----KGAERLYSVAREFAGDI 305 Query: 213 ----LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268 L +LYCG G +++A +V+ +E+ + +V+AAR N N +NN++ + Sbjct: 306 SNKILFDLYCGTGTIGMIMAPLSKKVVGIELVEEAVDAARENARLNGLNNIQFIA----- 360 Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD-DATVGMVQAYPH-ILYISCNPD 326 +R +E N D+ + +DPPR G++ A + +++ P I+Y+SCNP Sbjct: 361 -GDVAQRIKEINDKPDV---------VVLDPPRPGVNPKAVMDIIKLNPEKIIYVSCNPV 410 Query: 327 SLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRK 365 SL RDL +L + +E++ D FP+T H+E VLL K Sbjct: 411 SLVRDLKMLIQRQYKVEKVKCVDMFPHTYHIETVVLLTNK 450 >gi|218283356|ref|ZP_03489390.1| hypothetical protein EUBIFOR_01979 [Eubacterium biforme DSM 3989] gi|218215910|gb|EEC89448.1| hypothetical protein EUBIFOR_01979 [Eubacterium biforme DSM 3989] Length = 406 Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 88/353 (24%), Positives = 155/353 (43%), Gaps = 55/353 (15%) Query: 42 HYRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALM---IEMMATIRLE- 97 HYR + D +Y ++ + ++ + + L+N ++ E++ +++LE Sbjct: 54 HYRNKVIVGFAKDKGKVYSGLYASHSHRVVKTENCIMQPKLVNEIINKITELVGSMKLEL 113 Query: 98 -------PLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQ 150 LLR L + + ++D+ +V + + + + + L K +Q Sbjct: 114 YNERTGTGLLRHVLIRWGH---KTDEVMVVFVTSQKMFPSRKNMVRVLTSEFPQIKTIVQ 170 Query: 151 LIGRANKTKICLDRDYVDERLTVAGRTLIYRQI--------ENSFTQPNA-------GIN 195 I KT I L DE + + G +I+ ++ NSF Q ++ G+ Sbjct: 171 NIN-PRKTSIVLQ----DEAIVLYGNGMIHDELCGLDIAFSHNSFYQIHSEQCEVLYGLA 225 Query: 196 VHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH 255 ML+ T +L+ YCG G L + +V+ VE+ ++E A+YN N Sbjct: 226 KKMLDLKETDT------VLDTYCGVGTIGLTMTDSCKKVMGVEVNPDAIENAKYNAKQNK 279 Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY 315 + N++ V M S EF MR+ R+++ R+ I +DPPR+G + A Sbjct: 280 IKNIEFVAMDSTEF---MRQARKYHN---------RYDAIILDPPRAGTTKDFIECATAL 327 Query: 316 P--HILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRK 365 ILYISC+P + RDL+ + +L L D FPYT H+E +L +K Sbjct: 328 NPRKILYISCDPRTQVRDLNQFRKQGYVTNKLELVDLFPYTDHIESVCVLEKK 380 >gi|255528224|ref|ZP_05395044.1| RNA methyltransferase, TrmA family [Clostridium carboxidivorans P7] gi|296188118|ref|ZP_06856510.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium carboxidivorans P7] gi|255508074|gb|EET84494.1| RNA methyltransferase, TrmA family [Clostridium carboxidivorans P7] gi|296047244|gb|EFG86686.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium carboxidivorans P7] Length = 450 Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 68/267 (25%), Positives = 122/267 (45%), Gaps = 42/267 (15%) Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD 165 QID+ + ++++ L Y A L+ LH + +A++ K+ RD Sbjct: 218 QIDFNLEEFKESLLNLSY-----------AGELKGILHTINDSFSDVVQADEIKVLYGRD 266 Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-----LLELYCGN 220 Y+ E L L ++ SF Q N+ E + + K GD + +LYCG Sbjct: 267 YIIEELM----GLKFKIAPESFFQTNS----KGAEKLYSIVKEFLGDASSKVVFDLYCGT 318 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G ++A + +VL +E+ + +V+AA N N +NN + + + + + + + Sbjct: 319 GTIGQIVAPNAKKVLGIELIEEAVKAANENSKLNGLNNCEFIAGDVAKVIKTVTEKPD-- 376 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDL-SILST 337 I +DPPR G+ + V + P I+Y+SCNP +L DL ++ Sbjct: 377 -------------VIILDPPRPGVHPVALDYVIKFNAPDIVYVSCNPKTLVTDLKGLIEA 423 Query: 338 THTIERLALFDQFPYTRHMECGVLLVR 364 +T+E++ + D FP+T H+E V L + Sbjct: 424 GYTVEKVKIMDMFPHTPHVETVVKLSK 450 >gi|229527058|ref|ZP_04416453.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Vibrio cholerae 12129(1)] gi|229335455|gb|EEO00937.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Vibrio cholerae 12129(1)] Length = 440 Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 64/193 (33%), Positives = 98/193 (50%), Gaps = 29/193 (15%) Query: 183 IENSFTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVE 238 + + F Q N +N HM L W+ + Q +L+L+CG GNF+L LA+ V+ VE Sbjct: 266 LPSHFIQVNRAVNQHMVAQALNWLEVSP---QERVLDLFCGLGNFTLPLAKQAQAVVGVE 322 Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY---RFKTI 295 V+ A +N N +NNV F QA N +D+ S+ +F + Sbjct: 323 GVDEMVQHATHNAKLNQINNVA--------FYQA-------NLEQDMTSSSWAQQKFAKV 367 Query: 296 FVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPY 352 +DP R+G + V + A ++Y+SCNP +L RD S+LS +E+L + D FP+ Sbjct: 368 LLDPARAGA-EGIVDQLSALGAKRVVYVSCNPATLARDSQSLLSQGFRLEKLGMLDMFPH 426 Query: 353 TRHMECGVLLVRK 365 T H+E L V+K Sbjct: 427 TSHLESMALFVKK 439 >gi|229551874|ref|ZP_04440599.1| TrmA family tRNA (uracil-5-)-methyltransferase [Lactobacillus rhamnosus LMS2-1] gi|229314818|gb|EEN80791.1| TrmA family tRNA (uracil-5-)-methyltransferase [Lactobacillus rhamnosus LMS2-1] Length = 459 Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 68/214 (31%), Positives = 105/214 (49%), Gaps = 26/214 (12%) Query: 151 LIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ 210 ++GR K+K RDY+ ++L + ++ SF Q N I +L G+ Sbjct: 259 ILGR--KSKTIYGRDYLLDKLLGSE----FQISPVSFYQVNP-IQTEVLYTKAIEAAGLT 311 Query: 211 GD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268 G +++ Y G G SL +ARH +V VE+ + +V A+ N A NH+ NV Sbjct: 312 GKETVIDAYSGIGTISLTMARHAKQVYGVEVVESAVRDAKANAARNHIKNVTF------- 364 Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA---TVGMVQAYPHILYISCNP 325 + + E + KD D+ + VDPPR GLD VG ++ P ++YISCNP Sbjct: 365 --EVGKAEDVMQKWKDADLP---VDVLMVDPPRKGLDKTFIDAVGYMKP-PKMVYISCNP 418 Query: 326 DSLCRDLSILST-THTIERLALFDQFPYTRHMEC 358 +L RDL +L+ +T + D FP T+H+E Sbjct: 419 ATLARDLQLLTAFGYTAKETQPVDMFPQTQHIES 452 >gi|121728979|ref|ZP_01681983.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio cholerae V52] gi|147674864|ref|YP_001217954.1| 23S rRNA 5-methyluridine methyltransferase [Vibrio cholerae O395] gi|262167283|ref|ZP_06034993.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Vibrio cholerae RC27] gi|226725397|sp|A5F5I8|RUMA_VIBC3 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|121628745|gb|EAX61212.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio cholerae V52] gi|146316747|gb|ABQ21286.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio cholerae O395] gi|227014344|gb|ACP10554.1| putative RNA methyltransferase,TrmA family [Vibrio cholerae O395] gi|262024258|gb|EEY42949.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Vibrio cholerae RC27] Length = 440 Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 64/193 (33%), Positives = 98/193 (50%), Gaps = 29/193 (15%) Query: 183 IENSFTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVE 238 + + F Q N +N HM L W+ + Q +L+L+CG GNF+L LA+ V+ VE Sbjct: 266 LPSHFIQVNRAVNQHMVAQALNWLEVSP---QEHVLDLFCGLGNFTLPLAKQAQAVVGVE 322 Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY---RFKTI 295 V+ A +N N +NNV F QA N +D+ S+ +F + Sbjct: 323 GVDEMVQHATHNAKLNQINNVA--------FYQA-------NLEQDMTSASWAQQKFAKV 367 Query: 296 FVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPY 352 +DP R+G + V + A ++Y+SCNP +L RD S+LS +E+L + D FP+ Sbjct: 368 LLDPARAGA-EGIVDQLSALGAKRVVYVSCNPATLARDSQSLLSQGFRLEKLGMLDMFPH 426 Query: 353 TRHMECGVLLVRK 365 T H+E L V+K Sbjct: 427 TSHLESMALFVKK 439 >gi|199597359|ref|ZP_03210790.1| tRNA (uracil-5-)-methyltransferase related enzyme [Lactobacillus rhamnosus HN001] gi|199591875|gb|EDY99950.1| tRNA (uracil-5-)-methyltransferase related enzyme [Lactobacillus rhamnosus HN001] Length = 458 Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 71/218 (32%), Positives = 108/218 (49%), Gaps = 26/218 (11%) Query: 151 LIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML--EWVLAATKG 208 ++GR K+K RDY+ ++L G + SF Q N I +L + + AA Sbjct: 256 ILGR--KSKTIYGRDYLLDKLL--GSEFQISPV--SFYQVNP-IQTEVLYTKAIEAAALT 308 Query: 209 IQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268 + +++ Y G G SL +ARH +V VE+ + +V A+ N A NH+ NV Sbjct: 309 GKETVIDAYSGIGTISLTMARHAKQVYGVEVVESAVRDAKANAARNHIKNVTF------- 361 Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA---TVGMVQAYPHILYISCNP 325 + + E + KD D+ + VDPPR GLD VG ++ P ++YISCNP Sbjct: 362 --EVGKAEDVMQKWKDADLP---VDVLMVDPPRKGLDKTFIDAVGYMKP-PKMVYISCNP 415 Query: 326 DSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLL 362 +L RDL +L+ +T + D FP T+H+E LL Sbjct: 416 ATLARDLQLLAAFGYTAKETQPVDMFPQTQHIESVTLL 453 >gi|312881712|ref|ZP_07741489.1| 23S rRNA 5-methyluridine methyltransferase [Vibrio caribbenthicus ATCC BAA-2122] gi|309370602|gb|EFP98077.1| 23S rRNA 5-methyluridine methyltransferase [Vibrio caribbenthicus ATCC BAA-2122] Length = 439 Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 56/185 (30%), Positives = 97/185 (52%), Gaps = 17/185 (9%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 N+F Q N +N M++ L+ Q D +L+L+CG GNFSL +A+ V+ VE Sbjct: 268 NNFIQVNQMVNKAMIDQALSWLDINQSDRVLDLFCGLGNFSLPIAQRVKSVIGVEGIDVM 327 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 V+ A N NH+NN + + + +E + +E +F + +DP R+G Sbjct: 328 VKKASENAKLNHLNNAEFFQANLEESSTKFSWAQE------------KFDKVLLDPARAG 375 Query: 304 LDDATVGMVQAY--PHILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHMECGV 360 + + ++ ++Y+SCNP +L RD S+++ + +ERL + D FP+T H+E Sbjct: 376 A-SVIIDQISSFGASKVVYVSCNPATLARDSQSLIAQGYKLERLGMLDMFPHTSHLESMA 434 Query: 361 LLVRK 365 L V++ Sbjct: 435 LFVKE 439 >gi|258539292|ref|YP_003173791.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus rhamnosus Lc 705] gi|257150968|emb|CAR89940.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus rhamnosus Lc 705] Length = 453 Score = 94.0 bits (232), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 69/214 (32%), Positives = 104/214 (48%), Gaps = 26/214 (12%) Query: 151 LIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ 210 ++GR K+K RDY+ ++L G + SF Q N I +L G+ Sbjct: 253 ILGR--KSKTIYGRDYLLDKLL--GSEFQISPV--SFYQVNP-IQTEVLYTKAIEAAGLT 305 Query: 211 GD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268 G +++ Y G G SL +ARH +V VE+ + +V A+ N A NH+ NV Sbjct: 306 GKETVIDAYSGIGTISLTMARHAKQVYGVEVVESAVRDAKANAARNHIKNVTF------- 358 Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA---TVGMVQAYPHILYISCNP 325 + + E + KD D+ + VDPPR GLD VG ++ P ++YISCNP Sbjct: 359 --EVGKAEDVMQKWKDADLP---VDVLMVDPPRKGLDKTFIDAVGYMKP-PKMVYISCNP 412 Query: 326 DSLCRDLSILST-THTIERLALFDQFPYTRHMEC 358 +L RDL +L+ +T + D FP T+H+E Sbjct: 413 ATLARDLQLLTAFGYTAKETQPVDMFPQTQHIES 446 >gi|229514078|ref|ZP_04403540.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Vibrio cholerae TMA 21] gi|229349259|gb|EEO14216.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Vibrio cholerae TMA 21] Length = 440 Score = 94.0 bits (232), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 64/193 (33%), Positives = 98/193 (50%), Gaps = 29/193 (15%) Query: 183 IENSFTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVE 238 + + F Q N +N HM L W+ + Q +L+L+CG GNF+L LA+ V+ VE Sbjct: 266 LPSHFIQVNRAVNQHMVVQALNWLEVSP---QERVLDLFCGLGNFTLPLAKQAQAVVGVE 322 Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY---RFKTI 295 V+ A +N N +NNV F QA N +D+ S+ +F + Sbjct: 323 GVDEMVQHATHNAKLNQINNVA--------FYQA-------NLEQDMTSASWAQQKFAKV 367 Query: 296 FVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRD-LSILSTTHTIERLALFDQFPY 352 +DP R+G + V + A ++Y+SCNP +L RD S+LS +E+L + D FP+ Sbjct: 368 LLDPARAGA-EGIVDQLSALGAKRVVYVSCNPATLARDSQSLLSQGFRLEKLGMLDMFPH 426 Query: 353 TRHMECGVLLVRK 365 T H+E L V+K Sbjct: 427 TSHLESMALFVKK 439 >gi|254291652|ref|ZP_04962440.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio cholerae AM-19226] gi|150422424|gb|EDN14383.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio cholerae AM-19226] Length = 440 Score = 94.0 bits (232), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 64/193 (33%), Positives = 98/193 (50%), Gaps = 29/193 (15%) Query: 183 IENSFTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVE 238 + + F Q N +N HM L W+ + Q +L+L+CG GNF+L LA+ V+ VE Sbjct: 266 LPSHFIQVNRAVNQHMVAQALNWLEVSP---QERVLDLFCGLGNFTLPLAKQAQAVVGVE 322 Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY---RFKTI 295 V+ A +N N +NNV F QA N +D+ S+ +F + Sbjct: 323 GVDEMVQHATHNAKLNQINNVA--------FYQA-------NLEQDMTSASWAQQKFAKV 367 Query: 296 FVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPY 352 +DP R+G + V + A ++Y+SCNP +L RD S+LS +E+L + D FP+ Sbjct: 368 LLDPARAGA-EGIVDQLSALGAKRVVYVSCNPATLARDSQSLLSQGFRLEKLGMLDMFPH 426 Query: 353 TRHMECGVLLVRK 365 T H+E L V+K Sbjct: 427 TSHLESMALFVKK 439 >gi|229521280|ref|ZP_04410700.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Vibrio cholerae TM 11079-80] gi|229341812|gb|EEO06814.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Vibrio cholerae TM 11079-80] Length = 440 Score = 94.0 bits (232), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 64/193 (33%), Positives = 98/193 (50%), Gaps = 29/193 (15%) Query: 183 IENSFTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVE 238 + + F Q N +N HM L W+ + Q +L+L+CG GNF+L LA+ V+ VE Sbjct: 266 LPSHFIQVNRAVNQHMVAQALNWLEVSP---QERVLDLFCGLGNFTLPLAKQAQAVVGVE 322 Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY---RFKTI 295 V+ A +N N +NNV F QA N +D+ S+ +F + Sbjct: 323 GVDEMVQHATHNAKLNQINNVA--------FYQA-------NLEQDMTSASWAQQKFAKV 367 Query: 296 FVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPY 352 +DP R+G + V + A ++Y+SCNP +L RD S+LS +E+L + D FP+ Sbjct: 368 LLDPARAGA-EGIVDQLSALGAKRVVYVSCNPATLARDSQSLLSQGFRLEKLGMLDMFPH 426 Query: 353 TRHMECGVLLVRK 365 T H+E L V+K Sbjct: 427 TSHLESMALFVKK 439 >gi|297581076|ref|ZP_06943001.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio cholerae RC385] gi|297534902|gb|EFH73738.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio cholerae RC385] Length = 440 Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 64/193 (33%), Positives = 98/193 (50%), Gaps = 29/193 (15%) Query: 183 IENSFTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVE 238 + + F Q N +N HM L W+ + Q +L+L+CG GNF+L LA+ V+ VE Sbjct: 266 LPSHFIQVNRAVNQHMVAQALNWLEVSP---QERVLDLFCGLGNFTLPLAKQAQAVVGVE 322 Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY---RFKTI 295 V+ A +N N +NNV F QA N +D+ S+ +F + Sbjct: 323 GVDEMVQHATHNAKLNQINNVA--------FYQA-------NLEQDMTSASWAQQKFAKV 367 Query: 296 FVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPY 352 +DP R+G + V + A ++Y+SCNP +L RD S+LS +E+L + D FP+ Sbjct: 368 LLDPARAGA-EGIVDQLSALGAKRVVYVSCNPATLARDSQSLLSQGFRLEKLGMLDMFPH 426 Query: 353 TRHMECGVLLVRK 365 T H+E L V+K Sbjct: 427 TSHLESMALFVKK 439 >gi|153831307|ref|ZP_01983974.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio cholerae 623-39] gi|148873209|gb|EDL71344.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio cholerae 623-39] Length = 440 Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 64/193 (33%), Positives = 98/193 (50%), Gaps = 29/193 (15%) Query: 183 IENSFTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVE 238 + + F Q N +N HM L W+ + Q +L+L+CG GNF+L LA+ V+ VE Sbjct: 266 LPSHFIQVNRAVNQHMVAQALNWLEVSP---QERVLDLFCGLGNFTLPLAKQAQAVVGVE 322 Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY---RFKTI 295 V+ A +N N +NNV F QA N +D+ S+ +F + Sbjct: 323 GVDEMVQHATHNAKLNQINNVA--------FYQA-------NLEQDMTSASWAQQKFAKV 367 Query: 296 FVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPY 352 +DP R+G + V + A ++Y+SCNP +L RD S+LS +E+L + D FP+ Sbjct: 368 LLDPARAGA-EGIVDQLSALGAKRVVYVSCNPATLARDSQSLLSQGFRLEKLGMLDMFPH 426 Query: 353 TRHMECGVLLVRK 365 T H+E L V+K Sbjct: 427 TSHLESMALFVKK 439 >gi|254226236|ref|ZP_04919829.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio cholerae V51] gi|125621209|gb|EAZ49550.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio cholerae V51] Length = 440 Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 64/193 (33%), Positives = 98/193 (50%), Gaps = 29/193 (15%) Query: 183 IENSFTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVE 238 + + F Q N +N HM L W+ + Q +L+L+CG GNF+L LA+ V+ VE Sbjct: 266 LPSHFIQVNRAVNQHMVAQALNWLEVSP---QERVLDLFCGLGNFTLPLAKQAQAVVGVE 322 Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY---RFKTI 295 V+ A +N N +NNV F QA N +D+ S+ +F + Sbjct: 323 GVDEMVQHATHNAKLNQINNVA--------FYQA-------NLEQDMTSASWAQQKFAKV 367 Query: 296 FVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRD-LSILSTTHTIERLALFDQFPY 352 +DP R+G + V + A ++Y+SCNP +L RD S+LS +E+L + D FP+ Sbjct: 368 LLDPARAGA-EGIVDQLSALGAKRVVYVSCNPATLARDSQSLLSQGFRLEKLGMLDMFPH 426 Query: 353 TRHMECGVLLVRK 365 T H+E L V+K Sbjct: 427 TSHLESMALFVKK 439 >gi|15642448|ref|NP_232081.1| 23S rRNA 5-methyluridine methyltransferase [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121591386|ref|ZP_01678669.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio cholerae 2740-80] gi|153819816|ref|ZP_01972483.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio cholerae NCTC 8457] gi|227082573|ref|YP_002811124.1| putative RNA methyltransferase,TrmA family [Vibrio cholerae M66-2] gi|229507488|ref|ZP_04396993.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Vibrio cholerae BX 330286] gi|229512317|ref|ZP_04401796.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Vibrio cholerae B33] gi|229519453|ref|ZP_04408896.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Vibrio cholerae RC9] gi|229606993|ref|YP_002877641.1| 23S rRNA 5-methyluridine methyltransferase [Vibrio cholerae MJ-1236] gi|254849576|ref|ZP_05238926.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Vibrio cholerae MO10] gi|255746877|ref|ZP_05420822.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Vibrio cholera CIRS 101] gi|262162042|ref|ZP_06031058.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Vibrio cholerae INDRE 91/1] gi|298500191|ref|ZP_07009996.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio cholerae MAK 757] gi|20140289|sp|Q9KPC1|RUMA_VIBCH RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|254766923|sp|C3LQZ5|RUMA_VIBCM RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|9657029|gb|AAF95594.1| TrmA family RNA methyltransferase, putative [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121546765|gb|EAX56937.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio cholerae 2740-80] gi|126509635|gb|EAZ72229.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio cholerae NCTC 8457] gi|227010461|gb|ACP06673.1| putative RNA methyltransferase,TrmA family [Vibrio cholerae M66-2] gi|229344142|gb|EEO09117.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Vibrio cholerae RC9] gi|229352282|gb|EEO17223.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Vibrio cholerae B33] gi|229354993|gb|EEO19914.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Vibrio cholerae BX 330286] gi|229369648|gb|ACQ60071.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Vibrio cholerae MJ-1236] gi|254845281|gb|EET23695.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Vibrio cholerae MO10] gi|255735279|gb|EET90679.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Vibrio cholera CIRS 101] gi|262028291|gb|EEY46948.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Vibrio cholerae INDRE 91/1] gi|297540884|gb|EFH76938.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio cholerae MAK 757] Length = 440 Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 64/193 (33%), Positives = 98/193 (50%), Gaps = 29/193 (15%) Query: 183 IENSFTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVE 238 + + F Q N +N HM L W+ + Q +L+L+CG GNF+L LA+ V+ VE Sbjct: 266 LPSHFIQVNRAVNQHMVVQALNWLEVSP---QERVLDLFCGLGNFTLPLAKQAQAVVGVE 322 Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY---RFKTI 295 V+ A +N N +NNV F QA N +D+ S+ +F + Sbjct: 323 GVDEMVQHATHNAKLNQINNVA--------FYQA-------NLEQDMTSASWAQQKFAKV 367 Query: 296 FVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRD-LSILSTTHTIERLALFDQFPY 352 +DP R+G + V + A ++Y+SCNP +L RD S+LS +E+L + D FP+ Sbjct: 368 LLDPARAGA-EGIVDQLSALGAKRVVYVSCNPATLARDSQSLLSQGFRLEKLGMLDMFPH 426 Query: 353 TRHMECGVLLVRK 365 T H+E L V+K Sbjct: 427 TSHLESMALFVKK 439 >gi|113460243|ref|YP_718301.1| 23S rRNA 5-methyluridine methyltransferase [Haemophilus somnus 129PT] gi|123327082|sp|Q0I127|RUMA_HAES1 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|112822286|gb|ABI24375.1| 23S rRNA m(5)U-1939 methyltransferase [Haemophilus somnus 129PT] Length = 439 Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 61/185 (32%), Positives = 98/185 (52%), Gaps = 23/185 (12%) Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 F Q N +N +M L+W+ K ++L+L+CG GNF+L ++R+ + +E P Sbjct: 269 FIQVNRQLNQNMVNTALDWLDLKKKD---NVLDLFCGMGNFTLPISRYVKSAVGIEGVLP 325 Query: 243 SVEAARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301 VE AR N NH +NV+ + S+ FT E+E+ ++ F I +DPPR Sbjct: 326 MVEKARRNGERNHCHNVQFYQCDLSQSFT-----EQEWAKVP--------FDKILLDPPR 372 Query: 302 SGLDDATVGMVQAYPH-ILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECG 359 SG A + I+Y+SCNP +L RD+ +L + ++++A+ D FP+T H+E Sbjct: 373 SGAAFALNALCYLMAEKIVYVSCNPATLVRDVELLLKFGYQLKKVAMIDMFPHTSHLESI 432 Query: 360 VLLVR 364 L R Sbjct: 433 SLFER 437 >gi|325577293|ref|ZP_08147777.1| 23S rRNA (uracil-5-)-methyltransferase [Haemophilus parainfluenzae ATCC 33392] gi|325160875|gb|EGC72996.1| 23S rRNA (uracil-5-)-methyltransferase [Haemophilus parainfluenzae ATCC 33392] Length = 436 Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 60/182 (32%), Positives = 93/182 (51%), Gaps = 17/182 (9%) Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 F Q N +N+ M+E L Q D +L+L+CG GNF+L LA+ + +E V+ Sbjct: 268 FIQVNTHLNLQMVETALDWLDLNQDDHVLDLFCGMGNFTLPLAKRVKSAVGIEGVFDMVQ 327 Query: 246 AARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 A+ N NH+ NV+ + + F++ ++ FN+ I +DPPRSG Sbjct: 328 KAQTNAQFNHIENVEFYQADLDQAFSEQPWAKQHFNK-------------ILLDPPRSGA 374 Query: 305 DDATVGMVQ-AYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLL 362 A + + ILY+SCNP +L RD IL S + I + A+ D FP+T H+E L Sbjct: 375 AFALNALCELCAEKILYVSCNPATLVRDAEILRSFGYRIIKTAMIDMFPHTSHLESVTLF 434 Query: 363 VR 364 ++ Sbjct: 435 IK 436 >gi|71278294|ref|YP_270771.1| 23S rRNA (Uracil-5-)-methyltransferase [Colwellia psychrerythraea 34H] gi|123631176|sp|Q47WQ1|RUMA_COLP3 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|71144034|gb|AAZ24507.1| 23S rRNA (Uracil-5-)-methyltransferase [Colwellia psychrerythraea 34H] Length = 469 Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 60/182 (32%), Positives = 96/182 (52%), Gaps = 14/182 (7%) Query: 184 ENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 N F Q N +N M+ LA + D +L+L+CG GNFSL LA+H RV+ VE + Sbjct: 295 SNDFIQINHQVNNAMISQALAWLNILATDNVLDLFCGLGNFSLALAKHAKRVVGVEGMQT 354 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302 V+ A N N ++N +F QA + + L + + F + +DP R+ Sbjct: 355 MVDKATQNSLVNGLDNC--------QFYQA---DLNSHWLLEPWVQGQVFDKVLLDPARA 403 Query: 303 GLDDATVGMVQ-AYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGV 360 G + A + + P +LY+SC+P +L RD +IL S + +E+++L D F T+H+E + Sbjct: 404 GAEQAVSQIAELKIPCVLYVSCDPATLARDSAILVSKGYKLEKISLMDMFSQTKHVETMI 463 Query: 361 LL 362 L Sbjct: 464 LF 465 >gi|170718282|ref|YP_001785299.1| 23S rRNA 5-methyluridine methyltransferase [Haemophilus somnus 2336] gi|168826411|gb|ACA31782.1| RNA methyltransferase, TrmA family [Haemophilus somnus 2336] Length = 439 Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 61/185 (32%), Positives = 98/185 (52%), Gaps = 23/185 (12%) Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 F Q N +N +M L+W+ K ++L+L+CG GNF+L ++R+ + +E P Sbjct: 269 FIQVNRQLNQNMVNTALDWLDLKKKD---NVLDLFCGMGNFTLPISRYVKSAVGIEGVLP 325 Query: 243 SVEAARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301 VE AR N NH +NV+ + S+ FT E+E+ ++ F I +DPPR Sbjct: 326 MVEKARRNGERNHCHNVQFYQCDLSQSFT-----EQEWAKVP--------FDKILLDPPR 372 Query: 302 SGLDDATVGMVQAYPH-ILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECG 359 SG A + I+Y+SCNP +L RD+ +L + ++++A+ D FP+T H+E Sbjct: 373 SGAAFALNALCYLMAEKIVYVSCNPATLVRDVELLLKFGYQLKKVAMIDMFPHTSHLESI 432 Query: 360 VLLVR 364 L R Sbjct: 433 SLFER 437 >gi|194016025|ref|ZP_03054640.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus pumilus ATCC 7061] gi|194012380|gb|EDW21947.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus pumilus ATCC 7061] Length = 460 Score = 93.6 bits (231), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 66/211 (31%), Positives = 100/211 (47%), Gaps = 26/211 (12%) Query: 166 YVDERLTVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGD--LLE 215 + DE + G IY I + SF Q N + + L + +QG+ +++ Sbjct: 260 FGDETTVLWGEEYIYDTIGDIKFAISARSFYQVNPAQTKVLYDKALEYAE-LQGEEIVID 318 Query: 216 LYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275 YCG G SL LA+ RV VEI ++E A+ N A N +NNV+ ++ + Sbjct: 319 AYCGIGTISLFLAQKAGRVYGVEIVPEAIEDAKRNAALNEINNVEFAVGEAETVIPNWYK 378 Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYPH-ILYISCNPDSLCRDLS 333 E + T+ VDPPR G D+A + + + P ++Y+SCNP +L RDL Sbjct: 379 E------------GIKADTLVVDPPRKGCDEALLDTILKMKPKRVVYVSCNPGTLARDLR 426 Query: 334 ILS-TTHTIERLALFDQFPYTRHMECGVLLV 363 IL + E + D FP+T H+EC LV Sbjct: 427 ILEDGGYVTEEVQPVDMFPHTAHVECVASLV 457 >gi|242278181|ref|YP_002990310.1| RNA methyltransferase, TrmA family [Desulfovibrio salexigens DSM 2638] gi|242121075|gb|ACS78771.1| RNA methyltransferase, TrmA family [Desulfovibrio salexigens DSM 2638] Length = 465 Score = 93.2 bits (230), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 61/206 (29%), Positives = 107/206 (51%), Gaps = 19/206 (9%) Query: 164 RDYVDERLTVA-GRTLIYRQIENSFTQPNA-GINVHMLEWVLAATKGIQGDLLELYCGNG 221 ++++ E LT A G + YR N+F Q N+ G V + A + +L+CG+G Sbjct: 272 QEHITETLTHADGSEVSYRITPNAFFQTNSKGAEVLYRKSSELAAPKADDVVWDLFCGSG 331 Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281 + +A+ +++ +E+++ SV++A+ N A N + N + + + E+ Sbjct: 332 GIGMFMAKDVGKMIGIEVSEESVQSAKDNAALNGLENTQYI-------VGNLASEKGLPE 384 Query: 282 -LKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCRDLSILSTT 338 L D+ + VDPPRSG+ D ++ +++ P ILYISCNP +L RD + + Sbjct: 385 DLPHPDM-------VIVDPPRSGVPDPSLQKLIELGPEKILYISCNPSTLARDAAKMEGR 437 Query: 339 HTIERLALFDQFPYTRHMECGVLLVR 364 + +ER A D FP+T H+E LL + Sbjct: 438 YKLERFAAVDMFPHTAHVESIALLTK 463 >gi|116747738|ref|YP_844425.1| RNA methyltransferase [Syntrophobacter fumaroxidans MPOB] gi|116696802|gb|ABK15990.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Syntrophobacter fumaroxidans MPOB] Length = 488 Score = 93.2 bits (230), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 65/228 (28%), Positives = 109/228 (47%), Gaps = 18/228 (7%) Query: 142 LHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEW 201 +H+ + + +++++ ++ERL L +R SF Q N + + Sbjct: 274 VHSVSRKKAQVAFGDQSRVVAGPGVIEERLG----GLRFRISAESFFQTNPFSAEKLYDE 329 Query: 202 V--LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259 V LAA +G + + +LYCG G+ +L +A RV+ E+ ++E A N N + N Sbjct: 330 VSRLAAFQGTE-TVWDLYCGTGSIALSVAPRVARVVGFEVVDQAIEDACVNARLNGIENA 388 Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-H 317 + + KE R DI + DPPR+G+ VG +++ P Sbjct: 389 RFISGDLKERINHARGPGSGEHHPDI---------VITDPPRAGMHPQVVGALLEMGPGR 439 Query: 318 ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 I+Y+SCNP +L RDL+ + + I + FD FP+T H+EC V + RK Sbjct: 440 IIYVSCNPATLARDLAFFTERYEIGTVRPFDLFPHTPHIECVVRMDRK 487 >gi|261211546|ref|ZP_05925834.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Vibrio sp. RC341] gi|260839501|gb|EEX66127.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Vibrio sp. RC341] Length = 440 Score = 93.2 bits (230), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 62/191 (32%), Positives = 97/191 (50%), Gaps = 21/191 (10%) Query: 181 RQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEI 239 R + N F Q N +N M+E L + + D +L+L+CG GNF+L LA V+ +E Sbjct: 264 RFLPNHFIQVNRSVNQQMVEQALNWLEVNKQDRVLDLFCGLGNFTLPLAAQAQEVVGIEG 323 Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY---RFKTIF 296 + V+ A +N N +NNV F QA N +D+ S+ +F + Sbjct: 324 VEEMVQHATHNAKLNQINNVA--------FYQA-------NLEQDMTNASWAQQKFAKVL 368 Query: 297 VDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTR 354 +DP R+G + + ++Y+SCNP +L RD S+LS +E+L + D FP+T Sbjct: 369 LDPARAGAEGIVDQLAALGAERVVYVSCNPATLARDSQSLLSQGFHLEKLGMLDMFPHTS 428 Query: 355 HMECGVLLVRK 365 H+E L V+K Sbjct: 429 HLESMALFVKK 439 >gi|88797954|ref|ZP_01113541.1| 23S rRNA (uracil-5-)-methyltransferase [Reinekea sp. MED297] gi|88779151|gb|EAR10339.1| 23S rRNA (uracil-5-)-methyltransferase [Reinekea sp. MED297] Length = 414 Score = 93.2 bits (230), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 84/331 (25%), Positives = 146/331 (44%), Gaps = 49/331 (14%) Query: 38 SEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLE 97 S P+ YR RA FH+ G +H R R + +I + ++ +R E Sbjct: 127 SAPVGYRHRARFHLSKSGTLGFH-------GARGRQVIPVEQCPVITTELQALLDRVRRE 179 Query: 98 PLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANK 157 L+ L Q++ +DDA + A ++ + AR+ Q Sbjct: 180 APLKG-LQQLELT----------------VDDAGKAGARAVKASDSARQAFEQWQNA--- 219 Query: 158 TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLEL 216 +D++ E LT T + FTQ N IN ML+ + + + D LL+L Sbjct: 220 ------QDWLTEELTYQAGTQVVTARPGDFTQVNREINQQMLKQIRQWLQPREDDRLLDL 273 Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276 +CGNGN SL + +L +E + P++EAA+ + ++ K + + FT ++ Sbjct: 274 FCGNGNISLAMLDEVAAILGLESSGPAIEAAKAAVK----HHPKAQFLEADLFTSCLQVR 329 Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDAT--VGMVQAYPHILYISCNPDSLCRDLSI 334 + + + +DPPR+G + + + + ++Y+SC+P +L RDL+ Sbjct: 330 PQ--------VAEFAPTIAVLDPPRAGAEQVVQWLSELPSLTRLVYVSCDPATLARDLAQ 381 Query: 335 LSTTH-TIERLALFDQFPYTRHMECGVLLVR 364 L+ H + + L D FP TRH+E VLL + Sbjct: 382 LTADHWHLRKAGLIDMFPQTRHIETMVLLKK 412 >gi|157691441|ref|YP_001485903.1| TrmA family RNA methyltransferase [Bacillus pumilus SAFR-032] gi|157680199|gb|ABV61343.1| TrmA family RNA methyltransferase [Bacillus pumilus SAFR-032] Length = 465 Score = 93.2 bits (230), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 65/211 (30%), Positives = 100/211 (47%), Gaps = 26/211 (12%) Query: 166 YVDERLTVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGD--LLE 215 + DE + G IY I + SF Q N + + L + +QG+ +++ Sbjct: 260 FGDETTVLWGEEYIYDTIGDIKFAISARSFYQVNPAQTKMLYDKALEYAE-LQGEETVID 318 Query: 216 LYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275 YCG G SL LA+ RV VEI ++E A+ N A N +NNV+ ++ + Sbjct: 319 AYCGIGTISLFLAQKAGRVYGVEIVPEAIEDAKRNAALNGINNVEFAVGEAETVIPNWYK 378 Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYPH-ILYISCNPDSLCRDLS 333 E + T+ VDPPR G D+A + + + P ++Y+SCNP +L RDL Sbjct: 379 E------------GIKADTLVVDPPRKGCDEALLDTILKMKPKRVVYVSCNPGTLARDLR 426 Query: 334 ILS-TTHTIERLALFDQFPYTRHMECGVLLV 363 IL + E + D FP+T H+EC L+ Sbjct: 427 ILEDGGYVTEEVQPVDMFPHTSHVECVAQLI 457 >gi|304399230|ref|ZP_07381097.1| RNA methyltransferase, TrmA family [Pantoea sp. aB] gi|304353284|gb|EFM17664.1| RNA methyltransferase, TrmA family [Pantoea sp. aB] Length = 438 Score = 92.8 bits (229), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 73/238 (30%), Positives = 116/238 (48%), Gaps = 24/238 (10%) Query: 136 IRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIY---RQIE-----NSF 187 +R DALH + +L ++K ++ L D DE LT ++ + Q++ F Sbjct: 211 LRHLDALHTDDRE-KLEQFSHKHQLMLFLDAGDENLTALSESMPFYHSHQLKLTFNPQDF 269 Query: 188 TQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246 Q N G+N M+ +A D +L+L+CG GNF+L + V+ VE V Sbjct: 270 IQVNDGVNQQMVAKAIAWLDLQPEDRVLDLFCGMGNFTLPVGIFVQNVVGVEGIAALVRQ 329 Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306 A YN N++ NV + + +E E +R + F + +DP R+G Sbjct: 330 AAYNADLNNLKNVSFFQHNLEE---------EVSRQP---WATQGFNKVLLDPARAGAAG 377 Query: 307 ATVGMVQAYPH-ILYISCNPDSLCRDLSI-LSTTHTIERLALFDQFPYTRHMECGVLL 362 +V+ P ++Y+SCNP +L RD I LS + +ER+A+ D FP+TRH+E VL Sbjct: 378 VMAHVVKLAPERVVYVSCNPTTLARDSQILLSAGYQLERVAMLDMFPHTRHLESMVLF 435 >gi|251793349|ref|YP_003008077.1| 23S rRNA 5-methyluridine methyltransferase [Aggregatibacter aphrophilus NJ8700] gi|247534744|gb|ACS97990.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Aggregatibacter aphrophilus NJ8700] Length = 438 Score = 92.8 bits (229), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 61/186 (32%), Positives = 93/186 (50%), Gaps = 23/186 (12%) Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 F Q NA +N M L+W+ + Q +L+L+CG GNF+L L+R + +E Sbjct: 269 FIQINADLNRQMITTALDWL---SLNSQDHVLDLFCGMGNFTLPLSRKVKSAVGIEGVSA 325 Query: 243 SVEAARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301 VE AR N N NV+ + + F ++ FN+ I +DPPR Sbjct: 326 MVEKARANAERNRCANVQFYQADLEQPFISQPWAQQPFNK-------------ILLDPPR 372 Query: 302 SGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSI-LSTTHTIERLALFDQFPYTRHMECG 359 +G A + Q A ILY+SCNP +L RD I L+ + ++++A+ D FP+T H+E Sbjct: 373 TGAAFALQALCQLAAEKILYVSCNPATLVRDTEILLNAGYQLDKVAMIDMFPHTGHLESI 432 Query: 360 VLLVRK 365 L +K Sbjct: 433 SLYQKK 438 >gi|325508852|gb|ADZ20488.1| S-adenosylmethionine-dependent methyltransferase [Clostridium acetobutylicum EA 2018] Length = 453 Score = 92.8 bits (229), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 61/233 (26%), Positives = 110/233 (47%), Gaps = 23/233 (9%) Query: 137 RLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINV 196 L+ LH + + R +K +DY+ ER+ L ++ SF Q N+ Sbjct: 238 ELKGILHVINDGLADMVRGDKIVTLFGQDYITERIL----DLKFKISLFSFFQTNSKGAE 293 Query: 197 HMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH 255 + VL + + +LYCG G + ++ ++V+ +E+ + +VEAA+ N N+ Sbjct: 294 KLYSEVLEFLGDVSNKTVFDLYCGTGTIGQLASKKAEKVIGIELIEEAVEAAKENTKLNN 353 Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY 315 ++N + + ++ + + TI +DPPR G+ + V + Sbjct: 354 ISNCSFIAGDVAKVITEIKEKPD---------------TIILDPPRPGVSPNAMKYVIKF 398 Query: 316 --PHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRK 365 P I+Y+SCNP +L DL +L + + +E++ + D FP T H+E VLL RK Sbjct: 399 NAPEIVYVSCNPKTLVNDLGVLRAYGYEVEKVKIVDMFPGTGHVETVVLLQRK 451 >gi|15894714|ref|NP_348063.1| S-adenosylmethionine-dependent methyltransferase [Clostridium acetobutylicum ATCC 824] gi|50401651|sp|Q97J51|Y1435_CLOAB RecName: Full=Uncharacterized RNA methyltransferase CA_C1435 gi|15024377|gb|AAK79403.1|AE007655_1 S-adenosylmethionine-dependent methyltransferases [Clostridium acetobutylicum ATCC 824] Length = 456 Score = 92.4 bits (228), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 61/233 (26%), Positives = 110/233 (47%), Gaps = 23/233 (9%) Query: 137 RLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINV 196 L+ LH + + R +K +DY+ ER+ L ++ SF Q N+ Sbjct: 241 ELKGILHVINDGLADMVRGDKIVTLFGQDYITERIL----DLKFKISLFSFFQTNSKGAE 296 Query: 197 HMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH 255 + VL + + +LYCG G + ++ ++V+ +E+ + +VEAA+ N N+ Sbjct: 297 KLYSEVLEFLGDVSNKTVFDLYCGTGTIGQLASKKAEKVIGIELIEEAVEAAKENTKLNN 356 Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY 315 ++N + + ++ + + TI +DPPR G+ + V + Sbjct: 357 ISNCSFIAGDVAKVITEIKEKPD---------------TIILDPPRPGVSPNAMKYVIKF 401 Query: 316 --PHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRK 365 P I+Y+SCNP +L DL +L + + +E++ + D FP T H+E VLL RK Sbjct: 402 NAPEIVYVSCNPKTLVNDLGVLRAYGYEVEKVKIVDMFPGTGHVETVVLLQRK 454 >gi|315635030|ref|ZP_07890311.1| 23S rRNA (uracil-5-)-methyltransferase [Aggregatibacter segnis ATCC 33393] gi|315476292|gb|EFU67043.1| 23S rRNA (uracil-5-)-methyltransferase [Aggregatibacter segnis ATCC 33393] Length = 438 Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 91/359 (25%), Positives = 166/359 (46%), Gaps = 36/359 (10%) Query: 14 LAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDD--LYHIMFDQQTKERM 71 L +++ RL+ + + F + + + EP HYR R + D + L + + +++ + Sbjct: 108 LVQRLSRLQPVPIHF----MPLLQGEPWHYRRRVRLSVLLDSKNRKLNIGLRRKNSQQII 163 Query: 72 RIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH-RLLDDA 130 I++ + +N L+ ++ A + + +L I+ + + D I L+ H + + + Sbjct: 164 PIEHCLVLEQPLNDLLPKLTALFS-QWSMPQQLGHIELVAA--DNGIAMLLRHIKNVGET 220 Query: 131 WRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQP 190 R +R A ++Q+ L + + + ++ Y ++ G + + F Q Sbjct: 221 DRTLLLRF-----AEQHQLMLFVQEHDS---IEHWYGEQPYYRLGDDITLQFDIRDFIQI 272 Query: 191 NAGINVHMLEWVLAATK-GIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249 NA +N M+ L + Q +L+L+CG GNF+L L+R + +E VE AR Sbjct: 273 NAQLNRQMIATALDWLELNPQDHVLDLFCGMGNFTLPLSRKVKSAVGIEGVSAMVEKARA 332 Query: 250 NIAANHVNNVKIVRMS-SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDAT 308 N N +NV+ R K F ++ FN+ I +DPPR+G A Sbjct: 333 NAERNGCHNVQFYRTDLDKPFISQAWAQQPFNK-------------ILLDPPRTGAAFAL 379 Query: 309 VGMVQAYPH-ILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRK 365 + Q ILY+SCNP +L RD IL + ++++A+ D FP T H+E + L RK Sbjct: 380 NALCQLQAESILYVSCNPATLVRDTEILRDAGYQLDKVAMIDMFPQTGHLE-SISLFRK 437 >gi|225851134|ref|YP_002731368.1| 23S rRNA (uracil-5-)-methyltransferase [Persephonella marina EX-H1] gi|225645087|gb|ACO03273.1| 23S rRNA (uracil-5-)-methyltransferase [Persephonella marina EX-H1] Length = 421 Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 96/375 (25%), Positives = 173/375 (46%), Gaps = 60/375 (16%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNL----QIFRSE-PIHYRMRAEFHIWHDGDDLYHIMFD 64 YE+Q+ K + L + + N+ +I+ S+ P +YR R + I + Y Sbjct: 81 YEKQVEIKAEILLETLNRIGRLNIDRIDKIYPSKKPFNYRNRTQLKIRGEKIGFYM---- 136 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQID--YLTSQSD-QAIVTL 121 +++++ + ID LL+ + M++ +R +L+ +FQ + ++ S SD +A+V Sbjct: 137 RESRQIINID----SCLLLKEDINGMISGVR--EILKFLIFQPEQVHIYSSSDGEALVKF 190 Query: 122 IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYR 181 +Y + + R + L+ H R + L + I +D + +R + G + IY Sbjct: 191 VYQKRV----RRFPLGLK---HLRSF---LSEKLKGAGIYHRKDDLLKRDVLLGESYIYE 240 Query: 182 QIE--------NSFTQPNAGINVHMLEWVLAATKGIQGD---LLELYCGNGNFSLVLARH 230 + +SF Q +NV+ +E +L A GD ++L+CG G +L AR+ Sbjct: 241 EYGGIKFRVSMDSFFQ----VNVYQVENLLDAVLQNIGDHEKAVDLFCGVGTLTLPSARY 296 Query: 231 FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY 290 + +E +V A +N N + N K RM + R F I Sbjct: 297 IKEIYGIESNPYAVNDANHNRKLNRIKNAKFFRMDAN-------RSGGF-------IAEL 342 Query: 291 RFKTIFVDPPRSGLDDATVGM---VQAYPHILYISCNPDSLCRDLSILSTTHTIERLALF 347 + + +DPPR+G+ D V + I+Y+SCNP +L RDL L +++E++ + Sbjct: 343 KPDLVIIDPPRTGVSDDLVRTFLDTDSIKRIIYVSCNPSTLARDLGYLKERYSVEKVYMI 402 Query: 348 DQFPYTRHMECGVLL 362 D FP T H+E V+L Sbjct: 403 DMFPQTYHIESVVVL 417 >gi|229524438|ref|ZP_04413843.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Vibrio cholerae bv. albensis VL426] gi|229338019|gb|EEO03036.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Vibrio cholerae bv. albensis VL426] Length = 440 Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 63/193 (32%), Positives = 98/193 (50%), Gaps = 29/193 (15%) Query: 183 IENSFTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVE 238 + + F Q N +N HM L W+ + Q +L+L+CG GNF+L LA+ V+ VE Sbjct: 266 LPSHFIQVNRAVNQHMVAQALNWLEVSP---QERVLDLFCGLGNFTLPLAKQAQAVVGVE 322 Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY---RFKTI 295 V+ A +N N +NNV F QA N +D+ S+ +F + Sbjct: 323 GVDEMVQHATHNAKLNQINNVA--------FYQA-------NLEQDMTSASWAQQKFAKV 367 Query: 296 FVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPY 352 +DP R+G + V + A ++Y+SCNP +L RD S+LS +++L + D FP+ Sbjct: 368 LLDPARAGA-EGIVDQLSALGAKRVVYVSCNPATLARDSQSLLSQGFRLDKLGMLDMFPH 426 Query: 353 TRHMECGVLLVRK 365 T H+E L V+K Sbjct: 427 TSHLESMALFVKK 439 >gi|153214523|ref|ZP_01949432.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio cholerae 1587] gi|124115325|gb|EAY34145.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio cholerae 1587] Length = 440 Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 63/193 (32%), Positives = 98/193 (50%), Gaps = 29/193 (15%) Query: 183 IENSFTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVE 238 + + F Q N +N HM L W+ + Q +L+L+CG GNF+L LA+ V+ VE Sbjct: 266 LPSHFIQVNRAVNQHMVAQALNWLEVSP---QERVLDLFCGLGNFTLPLAKQAQAVVGVE 322 Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY---RFKTI 295 V+ A +N N +NNV F QA N +D+ S+ +F + Sbjct: 323 GVDEMVQHATHNAKLNQINNVA--------FYQA-------NLEQDMTSASWAQQKFAKV 367 Query: 296 FVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPY 352 +DP R+G + V + A ++Y+SCNP +L RD S+LS +++L + D FP+ Sbjct: 368 LLDPARAGA-EGIVDQLSALGAKRVVYVSCNPATLARDSQSLLSQGFRLDKLGMLDMFPH 426 Query: 353 TRHMECGVLLVRK 365 T H+E L V+K Sbjct: 427 TSHLESMALFVKK 439 >gi|153803087|ref|ZP_01957673.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio cholerae MZO-3] gi|124121369|gb|EAY40112.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio cholerae MZO-3] Length = 440 Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 63/193 (32%), Positives = 98/193 (50%), Gaps = 29/193 (15%) Query: 183 IENSFTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVE 238 + + F Q N +N HM L W+ + Q +L+L+CG GNF+L LA+ V+ VE Sbjct: 266 LPSHFIQVNRAVNQHMVAQALNWLEVSP---QERVLDLFCGLGNFTLPLAKQAQAVVGVE 322 Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY---RFKTI 295 V+ A +N N +NNV F QA N +D+ S+ +F + Sbjct: 323 GVDEMVQHATHNAKLNQINNVA--------FYQA-------NLEQDMTSASWAQQKFAKV 367 Query: 296 FVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPY 352 +DP R+G + V + A ++Y+SCNP +L RD S+LS +++L + D FP+ Sbjct: 368 LLDPARAGA-EGIVDQLSALGAKRVVYVSCNPATLARDSQSLLSQGFRLDKLGMLDMFPH 426 Query: 353 TRHMECGVLLVRK 365 T H+E L V+K Sbjct: 427 TSHLESMALFVKK 439 >gi|293401235|ref|ZP_06645379.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291305361|gb|EFE46606.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 535 Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 55/158 (34%), Positives = 85/158 (53%), Gaps = 16/158 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++LYCG G S+ LA+ +V+ +EI + +V AR N A N ++NV+ V + + + Sbjct: 300 VIDLYCGVGTISMFLAQKAGKVIGIEIVEQAVRDARENAALNGLDNVEFVCSDAAAYAKK 359 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330 M + R + VDPPR G D T+ +VQ P ++Y+SC+P +L R Sbjct: 360 MSEQ------------GGRADVVVVDPPRKGCDQVTLDSIVQMAPERLVYVSCDPATLAR 407 Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMECGVLLV-RKP 366 DL IL + +E + D FP T H+E VLL +KP Sbjct: 408 DLRILEGKGYRVEVVQPVDMFPGTHHVETVVLLSQQKP 445 >gi|88858179|ref|ZP_01132821.1| 23S rRNA (uracil-5)-methyltransferase [Pseudoalteromonas tunicata D2] gi|88819796|gb|EAR29609.1| 23S rRNA (uracil-5)-methyltransferase [Pseudoalteromonas tunicata D2] Length = 440 Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 97/379 (25%), Positives = 175/379 (46%), Gaps = 56/379 (14%) Query: 9 QYEQQLAEKVDRLRQMMLAF----QVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 + QQL EK + Q+ F Q+ S P+HYR A +++D Sbjct: 96 ELSQQLVEKQHAVTQLFNKFAKIDQLNWQPAIESAPLHYRRSARIAVFYD---------- 145 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQ--SDQAIVTL- 121 + K + + GS I + + IR + + R + L Q + QAI L Sbjct: 146 -KVKRSFNVGFRQKGSKKIVDIGQCDVLDIRYQAVFR----EFSSLLPQLKNGQAITHLQ 200 Query: 122 ---------IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLT 172 + + A + A R L ++ + L G+A + ++ D Sbjct: 201 LCGVEHAHLVVRHIAPLAASDIAAIERVCL-THQWLLVLQGQAGEVEL---NDLAPPSYQ 256 Query: 173 VAGRTLIYRQIENSFTQPNAGINVHMLE----WVLAATKGIQGDLLELYCGNGNFSLVLA 228 ++ ++L + ++F Q NA +N ML W LA K + +L+L+CG GNFSLV+A Sbjct: 257 LSEQSLRFEFGLDNFIQVNAAVNQQMLSQAINW-LALDKNEK--VLDLFCGIGNFSLVMA 313 Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288 + V+ VE + SV+ A++N A N ++N + ++ +Q M + F+ D+ Sbjct: 314 TNALAVVGVEGVESSVQMAKHNSALNQLSNTQFY---CQDLSQDMASQAWFSEHYDV--- 367 Query: 289 SYRFKTIFVDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDLSILS-TTHTIERLAL 346 + +DP R+G + + ++ + ILY+SC+P +L RD +++ T++++AL Sbjct: 368 ------LVLDPSRTGAFEILQQLKLKRFKRILYVSCDPVTLARDSQLITQAGFTLDKIAL 421 Query: 347 FDQFPYTRHMECGVLLVRK 365 + FP+T H+E VL V++ Sbjct: 422 MNMFPHTGHIETMVLFVKR 440 >gi|312962346|ref|ZP_07776837.1| 23S rRNA (uracil-5-)-methyltransferase [Pseudomonas fluorescens WH6] gi|311283273|gb|EFQ61863.1| 23S rRNA (uracil-5-)-methyltransferase [Pseudomonas fluorescens WH6] Length = 450 Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 66/205 (32%), Positives = 101/205 (49%), Gaps = 35/205 (17%) Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHM----LEWVLAATKGIQGD--LLELYCGNGNF 223 RL L YR F Q NAG+N M LEW+ Q D +L+L+CG GNF Sbjct: 266 RLEAWDLALAYR--PGDFVQVNAGVNEAMVTQALEWLAP-----QPDDRVLDLFCGLGNF 318 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 +L LA+ V+AVE + VE A N +N+++NV+ + + +Q L Sbjct: 319 ALPLAKQVREVVAVEGVQTMVERAALNAVSNNLDNVQFFQ---ADLSQP---------LT 366 Query: 284 DIDIHSYRFKTIFVDPPRSGLDD-----ATVGMVQAYPHILYISCNPDSLCRD-LSILST 337 D + F + +DPPR G + AT+G + ++Y+SCNP +L RD + ++ Sbjct: 367 DAEWAKQGFSAVLLDPPRDGAQEVVRKLATLGARR----LVYVSCNPATLARDTVELVKQ 422 Query: 338 THTIERLALFDQFPYTRHMECGVLL 362 + ++R + D FP T H+E L Sbjct: 423 GYRLKRAGILDMFPQTAHVEAMALF 447 >gi|326804225|ref|YP_004322043.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Aerococcus urinae ACS-120-V-Col10a] gi|326650285|gb|AEA00468.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Aerococcus urinae ACS-120-V-Col10a] Length = 465 Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 60/215 (27%), Positives = 106/215 (49%), Gaps = 20/215 (9%) Query: 155 ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL- 213 A++ ++ RDY+ + L YR ++F QPN M++ Q L Sbjct: 266 ADQVEVLAGRDYICDELA----GFNYRLYFDTFFQPNPVQAQRMIDLACDWADLDQDSLV 321 Query: 214 LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273 ++L+CG G FSL LA+ ++ +EI + S+E+A+ N N + N + ++ Sbjct: 322 IDLFCGVGTFSLPLAKRAKALVGIEIVEQSIESAKRNARDNGIENAHFIARDAR------ 375 Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRD 331 + L +I+ + + +DPPR+G + + I+Y+SCNP +L +D Sbjct: 376 ------HGLAEIEAEWGQADLLLLDPPRNGAGGKIMRRIGRLGLEKIIYVSCNPKTLAQD 429 Query: 332 LSILST-THTIERLALFDQFPYTRHMECGVLLVRK 365 L+ L + I + L DQFP+T+H+E VL+ +K Sbjct: 430 LAWLRDFGYEISKFQLVDQFPHTQHVEAVVLIEKK 464 >gi|260899635|ref|ZP_05908030.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio parahaemolyticus AQ4037] gi|308110556|gb|EFO48096.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio parahaemolyticus AQ4037] Length = 439 Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 101/380 (26%), Positives = 162/380 (42%), Gaps = 64/380 (16%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQI---FRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66 Y+QQL K LRQ+M F ++ + E + YR RA ++ D + F + Sbjct: 98 YDQQLTHKQQTLRQLMRKFAGSDIDLDAPVLGESLGYRRRARVSLFVD-KKTRQLHFGFR 156 Query: 67 TKERMRIDYFMPGSLL---INALMIEMMATI----RLEPLLRAKLFQIDYLTSQSDQAIV 119 K+ +I +L +NAL+ E+ + + + E L +L D + + Sbjct: 157 KKQSKQIAQVTDCPVLAPELNALLPEIYSVLTAFKKPEQLGHVELVLGD------NGPCI 210 Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179 TL Y L D + L A ++Q L ++ L VAG Sbjct: 211 TLRYLSNLADEEVSALVEL-----ATRHQASLYLMPETDQLNL----------VAGEMPF 255 Query: 180 YRQI-------ENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARH 230 Y++ N+F Q N +N M+E + Q D +L+L+CG GNFSL +A+ Sbjct: 256 YQEAGVKIPFAPNNFIQVNQAVNQKMVEQAIEWLDP-QSDERVLDLFCGLGNFSLPIAKR 314 Query: 231 FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY 290 V+ VE VE A N + N +NN +F A N +D D ++ Sbjct: 315 AKHVVGVEGVAEMVEKASNNASLNQINNA--------QFYHA-------NLEQDFDGQAW 359 Query: 291 ---RFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDL-SILSTTHTIERL 344 F + +DP R+G + V A ++Y+SCNP +L RD S+L + + +L Sbjct: 360 AAENFDKVLLDPARAGA-SGIIDQVSALGAQRVVYVSCNPATLARDSQSLLEQGYQLTKL 418 Query: 345 ALFDQFPYTRHMECGVLLVR 364 + D FP+T H+E L + Sbjct: 419 GMLDMFPHTSHLESMALFEK 438 >gi|52841686|ref|YP_095485.1| 23S rRNA 5-methyluridine methyltransferase [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|60404654|sp|Q5ZVI4|RUMA_LEGPH RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|52628797|gb|AAU27538.1| 23S rRNA (uracil-5-)methyltransferase RumA [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 444 Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 59/182 (32%), Positives = 89/182 (48%), Gaps = 16/182 (8%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 N FTQ NA +N M+ + + D+ L+L+CG GNFSL +A+H RV+ VE K Sbjct: 272 NDFTQVNAELNRKMVTQAIQLMELKNSDIVLDLFCGLGNFSLPMAKHCSRVIGVEGNKNM 331 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 VE A N +NH+ NV + + + ++ + F + +DPPRSG Sbjct: 332 VERAYMNAKSNHITNVDFYAANLDDVMEVR------------NLVNTSFSKVLIDPPRSG 379 Query: 304 LDDATVGMVQAYPH-ILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTRHMECGV 360 + + P I+Y+SCNP +L RD IL + + + D FP+T H+E Sbjct: 380 ALEIVKQIDSIDPERIVYVSCNPITLARDTDILVNQKGYVLITAGVMDMFPHTAHVESIA 439 Query: 361 LL 362 L Sbjct: 440 LF 441 >gi|301154942|emb|CBW14405.1| 23S rRNA (uracil-5)-methyltransferase [Haemophilus parainfluenzae T3T1] Length = 436 Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 60/182 (32%), Positives = 91/182 (50%), Gaps = 17/182 (9%) Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 F Q N +N M+E L Q D +L+L+CG GNF+L LA+ + +E V+ Sbjct: 268 FIQVNTRLNQQMVETALDWLDLNQDDHVLDLFCGMGNFTLPLAKRVKSAVGIEGVLDMVK 327 Query: 246 AARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 A+ N NH+ NV+ + + F++ ++ FN+ I +DPPRSG Sbjct: 328 KAQANAQFNHIENVEFYQADLDQSFSEQPWSKQHFNK-------------ILLDPPRSGA 374 Query: 305 DDATVGMVQ-AYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLL 362 A + + ILY+SCNP +L RD IL S + I + A+ D FP T H+E L Sbjct: 375 AFALNALCELGAESILYVSCNPATLVRDAEILRSFGYRIIKTAMIDMFPNTSHLESVTLF 434 Query: 363 VR 364 ++ Sbjct: 435 IK 436 >gi|15603731|ref|NP_246805.1| 23S rRNA 5-methyluridine methyltransferase [Pasteurella multocida subsp. multocida str. Pm70] gi|20140227|sp|Q9CJX3|RUMA_PASMU RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|12722294|gb|AAK03950.1| unknown [Pasteurella multocida subsp. multocida str. Pm70] Length = 437 Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 57/178 (32%), Positives = 93/178 (52%), Gaps = 23/178 (12%) Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 F Q NA +N M LEW+ + ++L+L+CG GNF+L ++R ++V+ +E Sbjct: 268 FIQVNAVVNQKMIDTALEWLELTSND---NVLDLFCGMGNFTLPISRQVNQVVGIEGVGE 324 Query: 243 SVEAARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301 VE A+ N N +NV+ + + + F Q + FN+ I +DPPR Sbjct: 325 MVEKAKRNAEQNQCDNVQFYQANLDQPFVQQHWASQHFNK-------------ILLDPPR 371 Query: 302 SGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSI-LSTTHTIERLALFDQFPYTRHME 357 +G A + + ILY+SCNP +L RD +I L + ++++A+ D FP T H+E Sbjct: 372 TGAAFALHALCELGAEKILYVSCNPATLVRDTAILLQFNYRLKKVAMIDMFPNTGHLE 429 >gi|323341240|ref|ZP_08081486.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus ruminis ATCC 25644] gi|323091297|gb|EFZ33923.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus ruminis ATCC 25644] Length = 469 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 94/383 (24%), Positives = 171/383 (44%), Gaps = 48/383 (12%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFRS----EPIHYRMRAEFHIWHDGDDLYHIMFDQ 65 Y QL K +++ ++ + ++++ + +P HYR +A+ + DL F + Sbjct: 103 YPAQLKFKQKQIQDLLKKAHLDDIEVAETIGMKDPFHYRNKAQVPVRGTKGDLKTGFFKR 162 Query: 66 QTKERMRIDYFMPGSLLINALMIEMMATI---RLEP--------LLRAKLFQIDYLTSQS 114 + + ++ F+ I+ ++ E++ + LEP ++R + +I + + ++ Sbjct: 163 GSHNFLPLENFLIQDERIDEILKEVIKVLNAYELEPYDEERHSGMIRHLMVRIGHYSREA 222 Query: 115 DQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGR-------ANKTKICLDRDYV 167 IVT RL D RE A ++ A +Q + R KTK+ +D++ Sbjct: 223 MVVIVTK-NGRLPHD--REIAEKIVAACPDVVSVMQNVNRDRTNVILGQKTKLLFGKDHI 279 Query: 168 DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSL 225 + L L + SF Q N + L + G+ ++ YCG G SL Sbjct: 280 KDTLN----GLEFDISAQSFYQVNP-VQTEKLYQTAIKFANLTGEETAIDAYCGIGTISL 334 Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285 LA V VEI + ++E A+ N N ++N++ + + E A +E+ Sbjct: 335 SLAEKCRAVYGVEIVEAAIEDAKRNAELNELDNLRF-EVGNAEDWMAKWKEK-------- 385 Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDL-SILSTTHTIE 342 R I VDPPR GL ++ + I+Y+SCNP +L RD+ S++ + +E Sbjct: 386 ---GIRPNVIMVDPPRKGLTESLIESATGMNPDRIVYVSCNPATLVRDIQSLMEKGYHVE 442 Query: 343 -RLALFDQFPYTRHMECGVLLVR 364 R+ DQFP T H+EC ++ R Sbjct: 443 GRIQPVDQFPQTAHVECVTVMER 465 >gi|148358986|ref|YP_001250193.1| 23S rRNA (uracil-5-)methyltransferase RumA [Legionella pneumophila str. Corby] gi|296107035|ref|YP_003618735.1| 23S rRNA (uracil-5-)methyltransferase RumA [Legionella pneumophila 2300/99 Alcoy] gi|189045733|sp|A5IBU7|RUMA_LEGPC RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|148280759|gb|ABQ54847.1| 23S rRNA (uracil-5-)methyltransferase RumA [Legionella pneumophila str. Corby] gi|295648936|gb|ADG24783.1| 23S rRNA (uracil-5-)methyltransferase RumA [Legionella pneumophila 2300/99 Alcoy] Length = 444 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 59/182 (32%), Positives = 89/182 (48%), Gaps = 16/182 (8%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 N FTQ NA +N M+ + + D+ L+L+CG GNFSL +A+H RV+ VE K Sbjct: 272 NDFTQVNAELNRKMVTQAIQLMELKNSDIVLDLFCGLGNFSLPMAKHCSRVIGVEGNKNM 331 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 VE A N +NH+ NV + + + ++ + F + +DPPRSG Sbjct: 332 VERAYMNAKSNHITNVDFYAANLDDVMEVR------------NLVNTSFSKVLIDPPRSG 379 Query: 304 LDDATVGMVQAYPH-ILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTRHMECGV 360 + + P I+Y+SCNP +L RD IL + + + D FP+T H+E Sbjct: 380 ALEIVKQIDSIDPERIVYVSCNPITLARDTDILVNQKGYVLITAGVMDMFPHTAHVESIA 439 Query: 361 LL 362 L Sbjct: 440 LF 441 >gi|251794918|ref|YP_003009649.1| RNA methyltransferase, TrmA family [Paenibacillus sp. JDR-2] gi|247542544|gb|ACS99562.1| RNA methyltransferase, TrmA family [Paenibacillus sp. JDR-2] Length = 465 Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 74/243 (30%), Positives = 112/243 (46%), Gaps = 33/243 (13%) Query: 137 RLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIEN--------SFT 188 R+R AL K +Q + + I + DE + G +IY +++ SF Sbjct: 242 RIRAALPEVKSIVQNVNTRDTNVI-----FGDETKVLWGSEVIYDELDGIRFAISARSFY 296 Query: 189 QPNAGINVHMLEWVL--AATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246 Q N + + + A G + +++ YCG G SL LAR RV VEI ++E Sbjct: 297 QVNPSQTIELYRTAVDYAQLTGKE-SVIDAYCGIGTISLFLARKAGRVYGVEIVPEAIED 355 Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306 A+ N N ++N + + R RE + D+ I VDPPR G D Sbjct: 356 AKRNAELNGISNAS---FEAGPAEVVIPRWREEGIIPDV---------IVVDPPRKGCDP 403 Query: 307 ATVGMV-QAYPH-ILYISCNPDSLCRDLSILSTT--HTIERLALFDQFPYTRHMECGVLL 362 A + + + P ++Y+SCNP +L RDL L T+E + D FP+T H+EC V + Sbjct: 404 ALLDTILKMQPERVVYVSCNPSTLARDLRTLEDGGYKTVE-VTPVDMFPWTSHVECVVWM 462 Query: 363 VRK 365 VRK Sbjct: 463 VRK 465 >gi|163802964|ref|ZP_02196851.1| 23S rRNA (uracil-5-)-methyltransferase [Vibrio sp. AND4] gi|159173254|gb|EDP58082.1| 23S rRNA (uracil-5-)-methyltransferase [Vibrio sp. AND4] Length = 439 Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 94/371 (25%), Positives = 167/371 (45%), Gaps = 44/371 (11%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPNLQI---FRSEPIHYRMRAEFHIWHDGD--DLYHIMF 63 +Y+QQL K LRQ+M F ++++ + + YR RA + D L+ Sbjct: 97 KYDQQLTHKQQTLRQLMRKFAGSDIELDAPVLGDSLSYRRRARVSLLVDKKTRKLHFGFR 156 Query: 64 DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIY 123 +Q+K+ ++ + +N L+ E+ +T++ +L ++ + S I TL + Sbjct: 157 KKQSKQIAQVTDCPVLAPELNVLLPEIYSTLKAFKK-SEQLGHVELVLGDSGPCI-TLRH 214 Query: 124 HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQI 183 L D + L HA Y + + N I D + E G T+ + Sbjct: 215 LSKLADEETNTLVALARRHHASLYLMPETDQLNL--IEGDVPFYQE----VGVTVPF--T 266 Query: 184 ENSFTQPNAGINVHML----EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEI 239 N+F Q N +N M+ +W+ + +L+L+CG GNFSL +A+H V+ VE Sbjct: 267 PNNFIQVNQAVNQKMVAQAVDWLDPKS---DERVLDLFCGLGNFSLPIAKHAKHVVGVEG 323 Query: 240 AKPSVEAARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298 VE A N + N +NN + + ++F + +F++ + +D Sbjct: 324 VAEMVEKAANNASLNQINNAQFYHANLEQDFEGQVWAAEQFDK-------------VLLD 370 Query: 299 PPRSG----LDDATVGMVQAYPHILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYT 353 P R+G +D +V Q ++Y+SCNP +L RD S+L + + +L + D FP+T Sbjct: 371 PARAGASGIIDQVSVLGAQ---RVVYVSCNPATLARDSQSLLGQGYQLTKLGMLDMFPHT 427 Query: 354 RHMECGVLLVR 364 H+E L + Sbjct: 428 SHLESMALFEK 438 >gi|148654529|ref|YP_001274734.1| RNA methyltransferase [Roseiflexus sp. RS-1] gi|148566639|gb|ABQ88784.1| RNA methyltransferase, TrmA family [Roseiflexus sp. RS-1] Length = 434 Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 61/184 (33%), Positives = 90/184 (48%), Gaps = 18/184 (9%) Query: 185 NSFTQPNAGINVHMLEWVLAATKG-IQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 +F Q N +L + A G LL+LYCG G F+L LAR +V+ VE + Sbjct: 266 TTFFQVNVAAATTLLNLIRAGLGDEAGGRLLDLYCGAGTFTLPLARAAIQVVGVEEYPGA 325 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 V A + A NHV+NV+ V ++ ++ + F I +DPPR G Sbjct: 326 VADAERSAAVNHVSNVRFVVGRAEAVLSSLEGD---------------FDAIVLDPPRRG 370 Query: 304 L-DDATVGMVQAYPH-ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVL 361 +++ P I+Y+SC+P +L RDL L ++T+ER D FP T H+E V+ Sbjct: 371 CHPQVRQALLERAPRRIVYVSCHPATLARDLHTLIGSYTVERATPVDLFPQTPHVESVVV 430 Query: 362 LVRK 365 LVR Sbjct: 431 LVRS 434 >gi|168181545|ref|ZP_02616209.1| 23S rRNA -methyltransferase RumA [Clostridium botulinum Bf] gi|237796317|ref|YP_002863869.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum Ba4 str. 657] gi|182674982|gb|EDT86943.1| 23S rRNA -methyltransferase RumA [Clostridium botulinum Bf] gi|229260413|gb|ACQ51446.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum Ba4 str. 657] Length = 453 Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 63/241 (26%), Positives = 112/241 (46%), Gaps = 31/241 (12%) Query: 133 ECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNA 192 EC ++ LH + + + +K +I RDY+ E L L ++ +F Q N+ Sbjct: 234 ECKGEIKGILHTINDTLSDVVQVDKLEILYGRDYIIEELL----GLKFKIAPEAFFQTNS 289 Query: 193 GINVHMLEWVLAATKGIQGD-----LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA 247 E + + K GD + +LYCG G ++A +V+ VE+ + +V+AA Sbjct: 290 ----KGAEKLYSIVKDFLGDASSKVVFDLYCGTGTIGQIVASKAKKVIGVELIEEAVKAA 345 Query: 248 RYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307 N N +NN + + + + ++++ + I +DPPR G+ Sbjct: 346 NENAKLNGLNNCEFIAGDVAKVIKDVKQKPDI---------------IILDPPRPGVHPV 390 Query: 308 TVGMVQAY--PHILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 + V + I+Y+SCNP +L DL ++ + +E++ D FP+T H+E VLL R Sbjct: 391 ALEYVVKFEPKEIIYVSCNPKTLVDDLKYLIDNGYKLEKVKGMDMFPHTPHLETCVLLQR 450 Query: 365 K 365 K Sbjct: 451 K 451 >gi|317498564|ref|ZP_07956857.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lachnospiraceae bacterium 5_1_63FAA] gi|316894051|gb|EFV16240.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lachnospiraceae bacterium 5_1_63FAA] Length = 360 Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 71/206 (34%), Positives = 103/206 (50%), Gaps = 25/206 (12%) Query: 173 VAGRTLIYRQIEN--------SFTQPNAGINVHMLEWVL--AATKGIQGDLLELYCGNGN 222 V G+ IY I N SF Q N + E + A KG + + +LYCG G Sbjct: 165 VYGKPYIYDYIGNVKYQIGPLSFFQVNPTQTKVLYEKAMEYADLKG-EEIVWDLYCGIGT 223 Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282 SL LA+ +V VEI K +++ AR N N +N + ++E + RE E N + Sbjct: 224 ISLFLAQKAKKVYGVEIVKEAIDDARLNAKMNGFDNAEFFVGKAEE---VLPREYEKNGV 280 Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCRDLSILST-TH 339 TI VDPPR G D + MV+ P I+Y+SC+P +L RDL +LS + Sbjct: 281 --------YADTIVVDPPRKGCDSKLLETMVKMAPKRIVYVSCDPATLARDLKVLSEQGY 332 Query: 340 TIERLALFDQFPYTRHMECGVLLVRK 365 +E++ DQF ++ H+E VLL R+ Sbjct: 333 EVEKVCAVDQFSHSSHVETCVLLQRR 358 >gi|257467028|ref|ZP_05631339.1| tRNA (Uracil-5-) -methyltransferase [Fusobacterium gonidiaformans ATCC 25563] gi|315918165|ref|ZP_07914405.1| tRNA (Uracil-5-)-methyltransferase [Fusobacterium gonidiaformans ATCC 25563] gi|313692040|gb|EFS28875.1| tRNA (Uracil-5-)-methyltransferase [Fusobacterium gonidiaformans ATCC 25563] Length = 456 Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 93/388 (23%), Positives = 166/388 (42%), Gaps = 44/388 (11%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPNLQ-----IFRSEPIHYRMRA-EFHIWHDGDDLYHIM 62 +YE QL K ++++M N I E HYR + E H G + Sbjct: 87 KYEAQLQYKTAMVKEVMERIGKLNSNLVLDCIASPEEKHYRNKVIEPFSKHKGKIITG-F 145 Query: 63 FDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLL-------RAKLFQIDYLTSQSD 115 F +++ E ++ M S L N ++ E L + L I T+ S Sbjct: 146 FQRRSHEVFEVEENMLNSKLGNKIIETFKQYANQEKLSVYDEKKHQGLLRNIMIRTNSSQ 205 Query: 116 QAIVTLIYH-RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVA 174 +A++ LI + + ++++ ++ +++ + K I L KT + L D+ + + Sbjct: 206 EAMLVLIVNAKKIEESLKKILLQMPKNIPELK-SIYLSLNTRKTNVVLG----DKNICIW 260 Query: 175 GRTLIYRQI--------ENSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSL 225 G + ++ SF Q N H+ E L+ I+ ++++ Y G G + Sbjct: 261 GEKTLKEELFGIHFHISPTSFFQINVPQTKHLYEKALSLIPKIENKNVVDAYSGTGTIGM 320 Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285 +L+R +V A+EI + + NH++N++ + E E +RL + Sbjct: 321 LLSRKAKKVYAIEIVESASRDGAKTAKENHIDNIEFI---------CGPVEVELDRLLE- 370 Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTT-HTIE 342 I DPPR G++ + + V P ++YISCNP +L RDL I++ + + Sbjct: 371 --EGKNLDAIVFDPPRKGIEKSILRKVAEVGIPEMVYISCNPSTLARDLKIMAECGYQVG 428 Query: 343 RLALFDQFPYTRHMECGVLLVRKPSGWH 370 + FD FP T H+E VL+ R P H Sbjct: 429 EIQPFDMFPQTSHVESVVLMSRNPEEKH 456 >gi|260775202|ref|ZP_05884100.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Vibrio coralliilyticus ATCC BAA-450] gi|260608903|gb|EEX35065.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Vibrio coralliilyticus ATCC BAA-450] Length = 439 Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 107/418 (25%), Positives = 180/418 (43%), Gaps = 75/418 (17%) Query: 1 MSGTLLIDQYEQQLAEKVDRL-RQMMLAFQVPNLQIFRSEPI--HYRMRAEFHIWHDGDD 57 + G L +Q QL E + R ++ Q P+ Q R EP HY+ ++ H + Sbjct: 42 IEGALPGEQVLAQLTESKSKFSRATLIKVQTPSEQ--RVEPFCPHYQQCGGCNMQHLSSE 99 Query: 58 LYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMAT----IRLEPLLRAKLFQIDY-LTS 112 + M QQT ++ + F SL + A ++ R+ ++ K Q+ + Sbjct: 100 -HQQMHKQQTLSQL-MSKFAGQSLNLEAPIVGESEGYRRRARISVMVDKKTRQLKFGFRK 157 Query: 113 QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIG-----RANKTKICL----- 162 + + IVTL + +L E L AL +R Q + IG +A+ T+I + Sbjct: 158 KQSKDIVTLTHCPVLAPELDELLPDLY-ALLSRFSQQENIGHVELVKADNTRILVLRHLK 216 Query: 163 -----DRDYV----------------DERLTV-AGRTLIYRQI-------ENSFTQPNAG 193 D D + +E+L + G +Y++ N+F Q N Sbjct: 217 PLNNKDHDALLEFAKLNQITLYLMPNNEQLMLETGEAGVYQETGVNIPFEPNNFIQVNQQ 276 Query: 194 INVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249 +N M L+W+ + Q +L+L+CG GNFSL +A+ V+ VE V A + Sbjct: 277 VNAQMVTQALDWLALSE---QDRVLDLFCGLGNFSLPIAKQVKSVIGVEGVDEMVSKATH 333 Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309 N N ++N + + + ++ RE +F I +DP R+G V Sbjct: 334 NAQVNQIDNAQFYQANLEQDMSGQLWARE------------KFDKILLDPARAGA-SGIV 380 Query: 310 GMVQAY--PHILYISCNPDSLCRD-LSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 V A ++Y+SCNP +L RD S+LS +++L + D FP+T H+E L V+ Sbjct: 381 EQVSALGATRVVYVSCNPATLARDSQSLLSQGFELKKLGMLDMFPHTSHLESMALFVK 438 >gi|220916705|ref|YP_002492009.1| (uracil-5)-methyltransferase [Anaeromyxobacter dehalogenans 2CP-1] gi|219954559|gb|ACL64943.1| (Uracil-5)-methyltransferase [Anaeromyxobacter dehalogenans 2CP-1] Length = 438 Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 89/361 (24%), Positives = 145/361 (40%), Gaps = 29/361 (8%) Query: 11 EQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKER 70 E+ L E + R+ ++ + P+ YR RA+FH HD + F +++ E Sbjct: 100 ERSLHEALRRIGKLEPGSYPARPIVPSPSPLRYRARAKFH--HDRAAGRLVFFRRRSHEP 157 Query: 71 MRI---DYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLL 127 +R+ PG + + +A RL P + +++ + A L+ Sbjct: 158 VRLRECHLLSPGLDALREAVGPALAAARLSP----REVALEWSDAAGRGAAWLLLPEVTA 213 Query: 128 DDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGR--TLIYRQIEN 185 R A+ LRD + +Q A + D V GR R + Sbjct: 214 PVRARAEAL-LRDVPSLQGLVLQ----AEGGQPVTAGDPVLRHARAPGRPEAGTQRSRPD 268 Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 F Q N G N ++E L D+LEL+CG GNF+ L+ V AVE+ P+++ Sbjct: 269 VFQQANRGANARLVETALELLAPAGEDVLELHCGAGNFTGPLSEQARSVSAVEVQGPALD 328 Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD 305 AR ++ NV+ + +A RE + RF +DPPR G Sbjct: 329 LARADLGG---RNVRFFAGDALALARAFGRE--------AGPGARRFGAALLDPPREGAR 377 Query: 306 DATVGMVQ-AYPHILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHMECGVLLV 363 + P +Y+SC+P + RDL + + + + + D FP T H+E LL Sbjct: 378 GIGPALRDLGVPRAVYVSCDPATFARDLRACVEAGYRVAAVVPVDMFPQTHHVEGVALLE 437 Query: 364 R 364 R Sbjct: 438 R 438 >gi|149192073|ref|ZP_01870298.1| 23S rRNA (uracil-5-)-methyltransferase [Vibrio shilonii AK1] gi|148834098|gb|EDL51110.1| 23S rRNA (uracil-5-)-methyltransferase [Vibrio shilonii AK1] Length = 437 Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 63/185 (34%), Positives = 94/185 (50%), Gaps = 23/185 (12%) Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 F Q N IN M LEW+ + ++L+L+CG GNF+L LA+ RV+ VE + Sbjct: 269 FIQVNREINSKMVAQALEWLAPESSD---NVLDLFCGLGNFTLPLAKLCQRVVGVEGIQD 325 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302 V+ A+ N A NH+ NV EF QA + L ++ +F I +DP R+ Sbjct: 326 MVDWAQQNAALNHLTNV--------EFYQANLEQ----DLSEMSWAKQQFDKILLDPARA 373 Query: 303 GLDDATVGMVQAY--PHILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHMECG 359 G + V A +LY+SCNP +L RD S++ + + RL + D FP+T H+E Sbjct: 374 GA-SGVIDQVSALGATRVLYVSCNPATLARDTQSLIEQGYKLVRLGMMDMFPHTSHLESM 432 Query: 360 VLLVR 364 L + Sbjct: 433 ALFEK 437 >gi|116494563|ref|YP_806297.1| tRNA (uracil-5-)-methyltransferase related enzyme [Lactobacillus casei ATCC 334] gi|116104713|gb|ABJ69855.1| tRNA (uracil-5-)-methyltransferase related enzyme [Lactobacillus casei ATCC 334] Length = 454 Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 61/179 (34%), Positives = 89/179 (49%), Gaps = 20/179 (11%) Query: 186 SFTQPNAGINVHMLEWVLAATKGIQG--DLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 SF Q N I +L G+ G ++++ Y G G SL +ARH V VE+ +P+ Sbjct: 282 SFYQVNP-IQTEVLYKKAIEAAGLTGKENVIDAYSGIGTISLTMARHAKHVYGVEVVEPA 340 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 V AR N NH++NV ++E Q R KD + + VDPPR G Sbjct: 341 VRDARANAVRNHIDNVTFEVGKAEEVIQ---------RWKD---NELPVDVLMVDPPRKG 388 Query: 304 LDDA---TVGMVQAYPHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMEC 358 LD + VG ++ P I+Y+SCN +L RDL +L+ +T + D FP T+H+E Sbjct: 389 LDKSFIDAVGYMKP-PKIVYVSCNSATLARDLQLLAAFGYTAKETQPVDMFPQTQHIES 446 >gi|167767439|ref|ZP_02439492.1| hypothetical protein CLOSS21_01958 [Clostridium sp. SS2/1] gi|167710731|gb|EDS21310.1| hypothetical protein CLOSS21_01958 [Clostridium sp. SS2/1] gi|291558726|emb|CBL37526.1| 23S rRNA m(5)U-1939 methyltransferase [butyrate-producing bacterium SSC/2] Length = 457 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 104/398 (26%), Positives = 175/398 (43%), Gaps = 71/398 (17%) Query: 10 YEQQLAEKVDRLRQMMLAFQ-VPNLQ------IFRSEPIHYRMRAEFHIWHDGDDLYHIM 62 YE+QL K ++++ + + N++ + EP +YR +A+F + +D Sbjct: 89 YEKQLEYKFNKVKNCLERIGGLENIEEKMEPILGMEEPFYYRNKAQFPVGYD-------- 140 Query: 63 FDQQTKERMRIDYFMPGSL--LINALMIEMMATIRLEPLLRAKLFQIDYL-----TSQSD 115 KE I F G +I+ + + + LL+ +DY+ T+ + Sbjct: 141 -----KEGNLITGFYAGRTHHIIDCTHCMIQHPVNEQILLKV----LDYMKKNNITAYDE 191 Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQ--------LIGRANKTKIC--LDRD 165 + L+ H + ++ I + ++ K ++ L T IC ++++ Sbjct: 192 KTHKGLVRHIVTRVGFKTGEIMVCLVVNGSKKNLRNLEMLIDSLTEVEGMTSICVNINKE 251 Query: 166 YVDERLT-----VAGRTLIYRQIEN--------SFTQPNAGINVHMLEWVL--AATKGIQ 210 + L V G+ IY I N SF Q N + E + A KG + Sbjct: 252 KTNRILGSKIEEVYGKPYIYDYIGNVKYQIGPLSFFQVNPTQTKVLYEKAMEYADLKG-E 310 Query: 211 GDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270 + +LYCG G SL LA+ +V VEI K +++ AR N N +N + ++E Sbjct: 311 ETVWDLYCGIGTISLFLAQKAKKVYGVEIVKEAIDDARLNAKMNGFDNAEFFVGKAEE-- 368 Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSL 328 + RE E N + TI VDPPR G D + MV+ P I+Y+SC+P +L Sbjct: 369 -VLPREYEKNGV--------YADTIVVDPPRKGCDSKLLETMVKMAPKRIVYVSCDPATL 419 Query: 329 CRDLSILST-THTIERLALFDQFPYTRHMECGVLLVRK 365 RDL +LS + +E++ DQF ++ H+E V L RK Sbjct: 420 ARDLKVLSEQGYEVEKVCAVDQFSHSSHVETVVRLKRK 457 >gi|331003204|ref|ZP_08326711.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lachnospiraceae oral taxon 107 str. F0167] gi|330412857|gb|EGG92237.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lachnospiraceae oral taxon 107 str. F0167] Length = 470 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 56/154 (36%), Positives = 83/154 (53%), Gaps = 13/154 (8%) Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274 ++YCG G SL LA+ V VEI +++ AR N N++ NVK ++E Sbjct: 320 DMYCGIGTISLFLAKSAKFVYGVEIVDAAIQNARENAKLNNIENVKFFVGKAEEIITG-- 377 Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCRDL 332 E E +KDID+ I VDPPR GLD + M++ P I+Y+SC+ +L RDL Sbjct: 378 -EYENGNIKDIDV-------IVVDPPRKGLDKLAIDTMLKLLPKRIVYVSCDSSTLARDL 429 Query: 333 SIL-STTHTIERLALFDQFPYTRHMECGVLLVRK 365 IL + +++L + DQF + H E V++ RK Sbjct: 430 KILCEKEYELKKLTVVDQFARSYHTESVVVMERK 463 >gi|54294503|ref|YP_126918.1| 23S rRNA 5-methyluridine methyltransferase [Legionella pneumophila str. Lens] gi|59800218|sp|Q5WW81|RUMA_LEGPL RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|53754335|emb|CAH15812.1| hypothetical protein lpl1572 [Legionella pneumophila str. Lens] Length = 444 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 58/182 (31%), Positives = 90/182 (49%), Gaps = 16/182 (8%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 N FTQ NA +N M++ + + D+ L+L+CG GNFSL +A+H RV+ VE + Sbjct: 272 NDFTQVNAELNRKMVKQAIQLMELKNSDIVLDLFCGLGNFSLPMAKHCSRVIGVEGNRNM 331 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 VE A N +NH+ NV + + + ++ + F + +DPPRSG Sbjct: 332 VERAYMNAKSNHITNVDFYAANLDDVMEVR------------NLVNTSFSKVLIDPPRSG 379 Query: 304 LDDATVGMVQAYPH-ILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTRHMECGV 360 + + P I+Y+SCNP +L RD IL + + + D FP+T H+E Sbjct: 380 ALEIVKQIDSIDPERIVYVSCNPITLARDTDILVNQKGYVLITAGVMDMFPHTAHVESIA 439 Query: 361 LL 362 L Sbjct: 440 LF 441 >gi|311278256|ref|YP_003940487.1| RNA methyltransferase, TrmA family [Enterobacter cloacae SCF1] gi|308747451|gb|ADO47203.1| RNA methyltransferase, TrmA family [Enterobacter cloacae SCF1] Length = 433 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 63/190 (33%), Positives = 97/190 (51%), Gaps = 31/190 (16%) Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIA 240 F Q N G+N M ++W+ IQ D +L+L+CG GNF+L LAR V+ VE Sbjct: 264 FIQVNDGVNQKMVATAIDWL-----DIQPDDRVLDLFCGMGNFTLPLARRAASVVGVEGV 318 Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFV 297 VE A+ N A N ++NV + +E D+ ++ F I + Sbjct: 319 PALVEKAQQNAARNGLHNVTFFHENLEE---------------DVTRQAWAKNGFDKILL 363 Query: 298 DPPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRH 355 DP R+G +V+ P ++Y+SCNP +L RD ++L+ + I+R+A+ D FP+T H Sbjct: 364 DPARAGASGVMQHVVKLAPRRVVYVSCNPATLARDSEALLAAGYQIQRMAMLDMFPHTGH 423 Query: 356 MECGVLLVRK 365 +E VL K Sbjct: 424 LESIVLFEHK 433 >gi|293390947|ref|ZP_06635281.1| RNA methyltransferase [Aggregatibacter actinomycetemcomitans D7S-1] gi|290951481|gb|EFE01600.1| RNA methyltransferase [Aggregatibacter actinomycetemcomitans D7S-1] Length = 438 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 60/185 (32%), Positives = 93/185 (50%), Gaps = 17/185 (9%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 + F Q NA +N M+ L + D +L+L+CG GNF+L +AR + +E Sbjct: 267 SDFIQINAALNRQMINTALDWLALNERDHVLDLFCGMGNFTLPIARRVKSAVGIEGVSAM 326 Query: 244 VEAARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302 VE AR N N +NV+ + K F ++ FN+ I +DPPR+ Sbjct: 327 VEKARRNAERNRCHNVQFDQADLDKSFVNQGWAQQPFNK-------------ILLDPPRT 373 Query: 303 GLDDATVGMVQ-AYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGV 360 G A + Q +ILY+SCNP +L RD IL + + ++++A+ D FP+T H+E Sbjct: 374 GAAFALNALCQLQAENILYVSCNPATLVRDTEILHNAGYQLDKVAMIDMFPHTGHLESIS 433 Query: 361 LLVRK 365 L +K Sbjct: 434 LFRKK 438 >gi|288933811|ref|YP_003437870.1| RNA methyltransferase, TrmA family [Klebsiella variicola At-22] gi|288888540|gb|ADC56858.1| RNA methyltransferase, TrmA family [Klebsiella variicola At-22] Length = 434 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 61/190 (32%), Positives = 96/190 (50%), Gaps = 31/190 (16%) Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIA 240 F Q N G+N M LEW+ +Q + +L+L+CG GNF+L LA +V+ VE Sbjct: 263 FIQVNDGVNQQMVRTALEWL-----DLQPEDRVLDLFCGMGNFTLPLATRAAQVVGVEGV 317 Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFV 297 VE R N A N ++NV + +E D+ ++ F + + Sbjct: 318 PALVEKGRENAALNGLSNVTFFHENLEE---------------DVTRQAWAKHGFDKVLL 362 Query: 298 DPPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRH 355 DP R+G +++ P ++Y+SCNP +L RD ++L + I+RLA+ D FP+T H Sbjct: 363 DPARAGAPGVMPHIIKLAPRRVVYVSCNPATLARDSETLLQAGYQIQRLAMLDMFPHTGH 422 Query: 356 MECGVLLVRK 365 +E VL R+ Sbjct: 423 LESMVLFERR 432 >gi|229846419|ref|ZP_04466527.1| 23S rRNA 5-methyluridine methyltransferase [Haemophilus influenzae 7P49H1] gi|229810512|gb|EEP46230.1| 23S rRNA 5-methyluridine methyltransferase [Haemophilus influenzae 7P49H1] gi|309972509|gb|ADO95710.1| 23S rRNA m5U1939 methyltransferase [Haemophilus influenzae R2846] Length = 530 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 60/182 (32%), Positives = 90/182 (49%), Gaps = 17/182 (9%) Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 F Q N +N M+ L + Q D +L+L+CG GNF+L LA+ + +E V+ Sbjct: 269 FIQVNRALNERMVNTALDWLELSQQDCVLDLFCGMGNFTLPLAKRVKSAVGIEGVFEMVQ 328 Query: 246 AARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 A N A N + N++ + + F + + FN+ I +DPPRSG Sbjct: 329 KAAQNAARNQIKNIEFFQADLDQSFVEQPWDNQSFNK-------------ILLDPPRSGA 375 Query: 305 DDATVGMVQ-AYPHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLL 362 A + + ILY+SCNP +L RD IL + IE+ A+ D FP+T H+E VLL Sbjct: 376 AFALNALCELKAEKILYVSCNPATLVRDAEILCDFGYKIEKSAVIDMFPHTGHLETVVLL 435 Query: 363 VR 364 + Sbjct: 436 SK 437 >gi|28899340|ref|NP_798945.1| 23S rRNA 5-methyluridine methyltransferase [Vibrio parahaemolyticus RIMD 2210633] gi|260363768|ref|ZP_05776537.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio parahaemolyticus K5030] gi|260878969|ref|ZP_05891324.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio parahaemolyticus AN-5034] gi|260898314|ref|ZP_05906810.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio parahaemolyticus Peru-466] gi|50401546|sp|Q87LP5|RUMA_VIBPA RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|28807576|dbj|BAC60829.1| putative TrmA family RNA methyltransferase [Vibrio parahaemolyticus RIMD 2210633] gi|308085240|gb|EFO34935.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio parahaemolyticus Peru-466] gi|308090505|gb|EFO40200.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio parahaemolyticus AN-5034] gi|308111237|gb|EFO48777.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio parahaemolyticus K5030] Length = 439 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 98/381 (25%), Positives = 165/381 (43%), Gaps = 66/381 (17%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQI---FRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66 Y+QQL K LRQ+M F ++ + E + YR RA ++ D + F + Sbjct: 98 YDQQLTHKQQTLRQLMRKFAGSDIDLDAPVLGESLGYRRRARVSLFVD-KKTRQLHFGFR 156 Query: 67 TKERMRIDYFMPGSLL---INALMIEMMATIRL--EPLLRAKLFQIDYLTSQSDQAIVTL 121 K+ +I +L +N L+ E+ + ++ +P +L ++ + + I Sbjct: 157 KKQSKQIAQVTDCPVLAPELNVLLPEIYSVLKAFKKP---DQLGHVELVLGDNGPCITLR 213 Query: 122 IYHRLLDD---AWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTL 178 L DD A E A R + +L+ L+ ++ + VAG Sbjct: 214 HLSNLADDEVSALVELATRHQASLY-------LMPETDQLNL------------VAGEVP 254 Query: 179 IYRQI-------ENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLAR 229 Y++ N+F Q N +N M+E + Q D +L+L+CG GNFSL +A+ Sbjct: 255 FYQEAGVKIPFDPNNFIQVNQAVNQKMVEQAIKWLDP-QSDERVLDLFCGLGNFSLPIAK 313 Query: 230 HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHS 289 V+ VE VE A N + N +NN +F A N +D D + Sbjct: 314 RAKHVVGVEGVAEMVEKASNNASLNQINNA--------QFYHA-------NLEQDFDGQA 358 Query: 290 Y---RFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDL-SILSTTHTIER 343 + +F + +DP R+G + V A ++Y+SCNP +L RD S+L + + + Sbjct: 359 WAAEKFDKVLLDPARAGA-SGIIDQVSALGAQRVVYVSCNPATLARDSQSLLDQGYQLTK 417 Query: 344 LALFDQFPYTRHMECGVLLVR 364 L + D FP+T H+E L + Sbjct: 418 LGMLDMFPHTSHLESMALFEK 438 >gi|300854061|ref|YP_003779045.1| tRNA (uracil-5-) -methyltransferase, SAM-dependent [Clostridium ljungdahlii DSM 13528] gi|300434176|gb|ADK13943.1| tRNA (uracil-5-) -methyltransferase, SAM-dependent [Clostridium ljungdahlii DSM 13528] Length = 450 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 64/231 (27%), Positives = 110/231 (47%), Gaps = 31/231 (13%) Query: 142 LHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEW 201 LH + + +A+ +I RDY+ E + L ++ SF Q N+ E Sbjct: 243 LHTVNDNLSDMVKADNVEILYGRDYIMEEIL----GLKFKISPESFFQTNS----RGTEK 294 Query: 202 VLAATKGIQGD-----LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV 256 + A K GD + +LYCG G VL+ ++V+ VE+ + +V +A N N++ Sbjct: 295 LYAMIKDFLGDASSKTVFDLYCGTGTIGQVLSSSVNKVIGVELIEKAVASANENAKLNNI 354 Query: 257 NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY- 315 N + + K+ N L+D + I +DPPR G+ + V + Sbjct: 355 KNCRFIAGDVKDV---------LNTLED------KPDIIILDPPRPGVHPKALKYVIDFN 399 Query: 316 -PHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364 P I+Y+SCNP +L +DL++L + ++++ L D FP+T H+E V L + Sbjct: 400 APEIIYVSCNPKTLVQDLNVLIDAGYNVDKVKLMDMFPHTPHVETVVKLSK 450 >gi|299143365|ref|ZP_07036445.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298517850|gb|EFI41589.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 444 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 55/156 (35%), Positives = 82/156 (52%), Gaps = 18/156 (11%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 LL+LY G G + +L R L +EI K +VE+AR N N++NNVK + Sbjct: 303 LLDLYSGTGTITQILGRKAKSALGIEIVKDAVESARKNAEINNLNNVKFI---------- 352 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330 + F +K+++ Y+ I +DPPR G++ + + ++ LYISCNP + R Sbjct: 353 --CDDVFKAVKELE---YKADVIVLDPPREGINPKAIDKIISFRPEKFLYISCNPITFVR 407 Query: 331 DLSI-LSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 DL I L + + I L DQFP T H+E LL R+ Sbjct: 408 DLKIFLESGYEIIELKALDQFPRTNHIEIISLLSRQ 443 >gi|54297367|ref|YP_123736.1| 23S rRNA 5-methyluridine methyltransferase [Legionella pneumophila str. Paris] gi|59800221|sp|Q5X5A8|RUMA_LEGPA RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|53751152|emb|CAH12563.1| hypothetical protein lpp1412 [Legionella pneumophila str. Paris] Length = 444 Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 59/182 (32%), Positives = 88/182 (48%), Gaps = 16/182 (8%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 N FTQ NA +N M+ + + D+ L+L+CG GNFSL +A+H RV+ VE K Sbjct: 272 NDFTQVNAELNRKMVTQAIQLMELKNSDIVLDLFCGLGNFSLPMAKHCSRVIGVEGNKNM 331 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 VE A N +NH+ NV + + + + + F + +DPPRSG Sbjct: 332 VERAYMNAKSNHITNVDFYAANLDDVMEVR------------SLVNTSFSKVLIDPPRSG 379 Query: 304 LDDATVGMVQAYPH-ILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTRHMECGV 360 + + P I+Y+SCNP +L RD IL + + + D FP+T H+E Sbjct: 380 ALEIVKQIDSIDPERIVYVSCNPITLARDTDILVNQKGYVLITAGVMDMFPHTAHVESIA 439 Query: 361 LL 362 L Sbjct: 440 LF 441 >gi|307610159|emb|CBW99707.1| hypothetical protein LPW_14751 [Legionella pneumophila 130b] Length = 444 Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 57/177 (32%), Positives = 89/177 (50%), Gaps = 16/177 (9%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 N FTQ NA +N M++ + + D+ L+L+CG GNFSL +A+H RV+ VE + Sbjct: 272 NDFTQVNAELNRKMVKQAIQLMELKNSDIVLDLFCGLGNFSLPMAKHCSRVIGVEGNRNM 331 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 VE A N +NH+ NV + + + ++ + F + +DPPRSG Sbjct: 332 VERAYMNAKSNHITNVDFYAANLDDVMEVR------------NLVNTSFSKVLIDPPRSG 379 Query: 304 LDDATVGMVQAYPH-ILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTRHME 357 + + P I+Y+SCNP +L RD IL + + + D FP+T H+E Sbjct: 380 ALEIVKQIDAIDPERIVYVSCNPITLARDTDILVNQKGYVLITAGVMDMFPHTAHVE 436 >gi|152984405|ref|YP_001349925.1| 23S rRNA 5-methyluridine methyltransferase [Pseudomonas aeruginosa PA7] gi|150959563|gb|ABR81588.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Pseudomonas aeruginosa PA7] Length = 452 Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 62/192 (32%), Positives = 92/192 (47%), Gaps = 23/192 (11%) Query: 177 TLIYRQIENSFTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD 232 TL YR F Q NA +N M LEW+ G + +L+L+CG GNFSL LAR Sbjct: 275 TLAYR--PGDFVQVNAPVNRLMVRQALEWL---APGAEERVLDLFCGLGNFSLPLARQVA 329 Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292 +V+ VE V A N AN ++N + + ++A L + + F Sbjct: 330 QVVGVEGVAAMVGRASANALANGLDNAHFFQ---ADLSKA---------LAEAPWAAQGF 377 Query: 293 KTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSILS-TTHTIERLALFDQF 350 + +DPPR G +A GM ++Y+SCNP +L RD ++ + ++R + D F Sbjct: 378 TAVLLDPPRDGALEAVRGMSSLGARRVVYVSCNPATLARDAGEMARQGYRLKRAGILDMF 437 Query: 351 PYTRHMECGVLL 362 P T H+E L Sbjct: 438 PQTAHVEAMALF 449 >gi|153826889|ref|ZP_01979556.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio cholerae MZO-2] gi|149739252|gb|EDM53514.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio cholerae MZO-2] Length = 440 Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 63/193 (32%), Positives = 97/193 (50%), Gaps = 29/193 (15%) Query: 183 IENSFTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVE 238 + + F Q N +N M L W+ + Q +L+L+CG GNF+L LA+ V+ VE Sbjct: 266 LPSHFIQVNRAVNQQMVAQALNWLEVSP---QERVLDLFCGLGNFTLPLAKQAQAVVGVE 322 Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY---RFKTI 295 V+ A +N N +NNV F QA N +D+ S+ +F + Sbjct: 323 GVDEMVQHATHNAKLNQINNVA--------FYQA-------NLEQDMTSASWAQQKFAKV 367 Query: 296 FVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPY 352 +DP R+G + V + A ++Y+SCNP +L RD S+LS +E+L + D FP+ Sbjct: 368 LLDPARAGA-EGIVDQLSALGAKRVVYVSCNPATLARDSQSLLSQGFRLEKLGMLDMFPH 426 Query: 353 TRHMECGVLLVRK 365 T H+E L V+K Sbjct: 427 TSHLESMALFVKK 439 >gi|332652524|ref|ZP_08418269.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Ruminococcaceae bacterium D16] gi|332517670|gb|EGJ47273.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Ruminococcaceae bacterium D16] Length = 452 Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 104/394 (26%), Positives = 164/394 (41%), Gaps = 72/394 (18%) Query: 10 YEQQLAEKVDRLRQMM-----LAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 YE++L K DR+ + L ++P + + +P+ YR + + + Sbjct: 90 YEEELTAKWDRVNDALRRLGGLDLELPPV-LGAEDPLRYRNKVQLPV------------- 135 Query: 65 QQTKERMRIDYFMPGS---LLINALMIEMMATIRLEPLLRAKLFQ--IDYLTSQSDQAIV 119 Q K+ + I YF P S L + ++ +A RL +A + Q + + Q ++ Sbjct: 136 AQGKQGLSIGYFRPRSHDVLDVKDCPLQPLAVTRLREAFKAWMEQWSVPAYDESTCQGLI 195 Query: 120 TLIYHRLLDDAWRECAI-----------RLRDALHARKYQIQLIG-----RANKTKICLD 163 +Y R C + L +AL RK + LIG T + L Sbjct: 196 RHLYVRTNQAGQSLCCVVANGKKLPQVSELVEAL--RKAEPGLIGLVLNINQADTNVILG 253 Query: 164 --------RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL--AATKGIQGDL 213 +D+++E T+ G T +R SF Q N + + AA G Q + Sbjct: 254 PEYRTLWGQDFLEE--TLCGMT--FRLSVPSFFQINWAQTQRLYAQAVDFAALTG-QETV 308 Query: 214 LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273 L+LYCG G SL LA+ RV+ EI ++E A+ N A N V N + + + Sbjct: 309 LDLYCGIGTISLALAQKAGRVIGAEIVPQAIEDAKANAARNKVENTRFFCGDAGAVAAQL 368 Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRD 331 RE R + I VDPPR GL ++ A I+Y+SC+P +L RD Sbjct: 369 ARE------------GVRPQVICVDPPRKGLAPEVPAILASMAPERIVYVSCDPATLARD 416 Query: 332 LSILST-THTIERLALFDQFPYTRHMECGVLLVR 364 L + ++ D FP T H+E +LLVR Sbjct: 417 AKRLEELGYRAIKVQAVDLFPRTAHVETVLLLVR 450 >gi|254490826|ref|ZP_05104009.1| 23S rRNA (uracil-5-)-methyltransferase [Methylophaga thiooxidans DMS010] gi|224463998|gb|EEF80264.1| 23S rRNA (uracil-5-)-methyltransferase [Methylophaga thiooxydans DMS010] Length = 445 Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 67/189 (35%), Positives = 97/189 (51%), Gaps = 19/189 (10%) Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHF 231 AG TL + + FTQ NAGIN M++ L IQ + +L+L+CG GNF+L LA+ Sbjct: 261 AGLTLNFD--PSDFTQVNAGINEKMIQRALDLLD-IQPEDRILDLFCGLGNFTLPLAKRV 317 Query: 232 DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291 V+ VE V+ A+ NN + ++++ EF QA + E LKD Sbjct: 318 TEVVGVEGDLALVKHAQ--------NNALLNQLTNAEFEQADLTQTE---LKDYPWAQKG 366 Query: 292 FKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSILSTTH--TIERLALFD 348 F I +DPPRSG + + ++Y+SCNP +L RD L H T+E + D Sbjct: 367 FNKILLDPPRSGAFEVLHQLADLGAERLVYVSCNPATLARDAGELVNKHGYTMEAAGIMD 426 Query: 349 QFPYTRHME 357 FP+T H+E Sbjct: 427 MFPHTNHVE 435 >gi|327484944|gb|AEA79351.1| 23S rRNA (Uracil-5-) -methyltransferase RumA [Vibrio cholerae LMA3894-4] Length = 440 Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 63/193 (32%), Positives = 97/193 (50%), Gaps = 29/193 (15%) Query: 183 IENSFTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVE 238 + + F Q N +N M L W+ + Q +L+L+CG GNF+L LA+ V+ VE Sbjct: 266 LPSHFIQVNRAVNQQMVAQALNWLEVSP---QERVLDLFCGLGNFTLPLAKQAQAVVGVE 322 Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY---RFKTI 295 V+ A +N N +NNV F QA N +D+ S+ +F + Sbjct: 323 GVDEMVQHATHNAKLNQINNVA--------FYQA-------NLEQDMTSASWAQQKFAKV 367 Query: 296 FVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRD-LSILSTTHTIERLALFDQFPY 352 +DP R+G + V + A ++Y+SCNP +L RD S+LS +E+L + D FP+ Sbjct: 368 LLDPARAGA-EGIVDQLSALGAKRVVYVSCNPATLARDSQSLLSQGFRLEKLGMLDMFPH 426 Query: 353 TRHMECGVLLVRK 365 T H+E L V+K Sbjct: 427 TSHLESMALFVKK 439 >gi|209920234|ref|YP_002294318.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia coli SE11] gi|209913493|dbj|BAG78567.1| putative RNA methyltransferase [Escherichia coli SE11] Length = 433 Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 61/187 (32%), Positives = 91/187 (48%), Gaps = 27/187 (14%) Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 F Q NAG+N M LEW+ + +L+L+CG GNF+L LA+ V+ VE Sbjct: 263 FIQVNAGVNQKMVARALEWLDVQP---EDRVLDLFCGMGNFTLPLAKQAASVVGVEGVPA 319 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDP 299 VE + N N + NV + +E D+ + F + +DP Sbjct: 320 LVEKGQQNARLNGLQNVTFYHENLEE---------------DVTKQPWAKNGFDKVLLDP 364 Query: 300 PRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHME 357 R+G +++ P I+Y+SCNP +L RD ++L +TI RLA+ D FP+T H+E Sbjct: 365 ARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLE 424 Query: 358 CGVLLVR 364 VL R Sbjct: 425 SMVLFSR 431 >gi|193065133|ref|ZP_03046207.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli E22] gi|194426363|ref|ZP_03058918.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli B171] gi|260845431|ref|YP_003223209.1| 23S rRNA (uracil-5)-methyltransferase [Escherichia coli O103:H2 str. 12009] gi|260856895|ref|YP_003230786.1| 23S rRNA (uracil-5)-methyltransferase [Escherichia coli O26:H11 str. 11368] gi|192927264|gb|EDV81884.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli E22] gi|194415671|gb|EDX31938.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli B171] gi|257755544|dbj|BAI27046.1| 23S rRNA (uracil-5)-methyltransferase [Escherichia coli O26:H11 str. 11368] gi|257760578|dbj|BAI32075.1| 23S rRNA (uracil-5)-methyltransferase [Escherichia coli O103:H2 str. 12009] gi|323154829|gb|EFZ41022.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli EPECa14] gi|323159900|gb|EFZ45870.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli E128010] Length = 433 Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 61/187 (32%), Positives = 91/187 (48%), Gaps = 27/187 (14%) Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 F Q NAG+N M LEW+ + +L+L+CG GNF+L LA+ V+ VE Sbjct: 263 FIQVNAGVNQKMVARALEWLDVQP---EDRVLDLFCGMGNFTLPLAKQAASVVGVEGVPA 319 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDP 299 VE + N N + NV + +E D+ + F + +DP Sbjct: 320 LVEKGQQNARLNGLQNVTFYHENLEE---------------DVTKQPWAKNGFDKVLLDP 364 Query: 300 PRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHME 357 R+G +++ P I+Y+SCNP +L RD ++L +TI RLA+ D FP+T H+E Sbjct: 365 ARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLE 424 Query: 358 CGVLLVR 364 VL R Sbjct: 425 SMVLFSR 431 >gi|255280263|ref|ZP_05344818.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bryantella formatexigens DSM 14469] gi|255269354|gb|EET62559.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bryantella formatexigens DSM 14469] Length = 399 Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 77/265 (29%), Positives = 125/265 (47%), Gaps = 31/265 (11%) Query: 113 QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR-------- 164 QS Q +V L+ + + LR LH I L A KT + L Sbjct: 150 QSGQIMVVLVLADPIFPSKNNFVSALRR-LHPEITTIILNINAKKTSMVLGEREKTLYGP 208 Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGN 222 Y+++ T+ G+T +R SF Q N + +L + G +L+ YCG G Sbjct: 209 GYIED--TLLGKT--FRISAKSFYQVNP-VQTEVLYQTAIGYAALTGKERVLDAYCGIGT 263 Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282 L+ A V+ VE+ ++ AR N N + NVK + +F + E+ N Sbjct: 264 IGLLAASQAKEVIGVELNADAIRDARINARRNSITNVKFYNADAGKFMTGL-AEQNIN-- 320 Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCRDLSILS-TTH 339 +D+ +F+DPPR+G D+A + +V+ P ++YISCNP++L RDL L+ + Sbjct: 321 --VDV-------VFMDPPRAGSDEAFLSSVVKLQPGKVVYISCNPETLARDLKYLTGNGY 371 Query: 340 TIERLALFDQFPYTRHMECGVLLVR 364 +E++ D F +T H+EC VL+ + Sbjct: 372 KVEKIQPTDMFCFTEHVECVVLMSK 396 >gi|261867310|ref|YP_003255232.1| 23S rRNA 5-methyluridine methyltransferase [Aggregatibacter actinomycetemcomitans D11S-1] gi|261412642|gb|ACX82013.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Aggregatibacter actinomycetemcomitans D11S-1] Length = 438 Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 60/186 (32%), Positives = 93/186 (50%), Gaps = 23/186 (12%) Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 F Q NA +N M L+W+ + +L+L+CG GNF+L +AR + +E Sbjct: 269 FIQINAELNRQMINTALDWLALNERE---HVLDLFCGMGNFTLPIARRVKSAVGIEGVSA 325 Query: 243 SVEAARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301 VE AR N N +NV+ + K F ++ FN+ I +DPPR Sbjct: 326 MVEKARRNAERNRCHNVQFYQADLDKSFVNQGWAQQPFNK-------------ILLDPPR 372 Query: 302 SGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECG 359 +G A + Q +ILY+SCNP +L RD IL + + ++++A+ D FP+T H+E Sbjct: 373 TGAAFALNALCQLQAENILYVSCNPATLVRDTEILRNAGYQLDKVAMIDMFPHTGHLESI 432 Query: 360 VLLVRK 365 L +K Sbjct: 433 SLFRKK 438 >gi|327395011|dbj|BAK12433.1| 23S rRNA 5-methyluridine methyltransferase RumA [Pantoea ananatis AJ13355] Length = 439 Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 57/185 (30%), Positives = 92/185 (49%), Gaps = 21/185 (11%) Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 F Q N +N M+ +A D +L+L+CG GNF+L + + + VE V+ Sbjct: 269 FIQVNDTVNQQMVAKAIAWLDLQPEDRVLDLFCGMGNFTLPVGKSVQSAVGVEGVAALVQ 328 Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDPPRS 302 A YN N + NVK + + +E D+ + F + +DP R+ Sbjct: 329 QAEYNADVNALKNVKFFQHNLEE---------------DVSRQPWAMQGFNKVLLDPARA 373 Query: 303 GLDDATVGMVQAYPH-ILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHMECGV 360 G +V+ P ++Y+SCNP +L RD ++LS + +ER+A+ D FP+TRH+E V Sbjct: 374 GAAGVMAHVVKLSPECVVYVSCNPVTLARDSETLLSAGYQLERVAMLDMFPHTRHLESMV 433 Query: 361 LLVRK 365 L +K Sbjct: 434 LFRKK 438 >gi|218555336|ref|YP_002388249.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia coli IAI1] gi|218696384|ref|YP_002404051.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia coli 55989] gi|300815798|ref|ZP_07096022.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS 107-1] gi|218353116|emb|CAU98943.1| 23S rRNA (uracil-5)-methyltransferase [Escherichia coli 55989] gi|218362104|emb|CAQ99713.1| 23S rRNA (uracil-5)-methyltransferase [Escherichia coli IAI1] gi|300531727|gb|EFK52789.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS 107-1] gi|323946492|gb|EGB42518.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli H120] gi|324016362|gb|EGB85581.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS 117-3] Length = 433 Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 61/187 (32%), Positives = 91/187 (48%), Gaps = 27/187 (14%) Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 F Q NAG+N M LEW+ + +L+L+CG GNF+L LA+ V+ VE Sbjct: 263 FIQVNAGVNQKMVARALEWLDVQP---EDRVLDLFCGMGNFTLPLAKQAASVVGVEGVPA 319 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDP 299 VE + N N + NV + +E D+ + F + +DP Sbjct: 320 LVEKGQQNARLNGLQNVTFYHENLEE---------------DVTKQPWAKNGFDKVLLDP 364 Query: 300 PRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHME 357 R+G +++ P I+Y+SCNP +L RD ++L +TI RLA+ D FP+T H+E Sbjct: 365 ARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLE 424 Query: 358 CGVLLVR 364 VL R Sbjct: 425 SMVLFSR 431 >gi|218782690|ref|YP_002434008.1| RNA methyltransferase, TrmA family [Desulfatibacillum alkenivorans AK-01] gi|218764074|gb|ACL06540.1| RNA methyltransferase, TrmA family [Desulfatibacillum alkenivorans AK-01] Length = 463 Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 67/212 (31%), Positives = 104/212 (49%), Gaps = 25/212 (11%) Query: 159 KICL-DRDYVDERLTVAGRTLIYRQIENSFTQPNA--GINVHMLEWVLAATKGIQGDLLE 215 +ICL +DY+ + + Y+ NSF Q N N++ A KG + +L+ Sbjct: 272 EICLKGQDYIMDSIG----PWEYKVSANSFFQTNTRQAKNLYQTMEDYADLKGGE-RVLD 326 Query: 216 LYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275 LY G G + L+ VL +EI + +V AR N N VNN + Sbjct: 327 LYSGAGAIPIWLSPKAGEVLGIEIVEVAVADARDNCERNKVNNCTFLVG----------- 375 Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG--MVQAYPHILYISCNPDSLCRDLS 333 + L+ +D +++ + +DPPRSG+ V M A ++YISCNP +L RDL Sbjct: 376 ----DILETLDEVAHKPDVLVIDPPRSGMHGKVVKKVMAMAPSKMVYISCNPTTLARDLE 431 Query: 334 ILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 +LS T+++E + D FP+T H+E LV+K Sbjct: 432 LLSETYSVEEVQPIDMFPHTHHIEAVARLVKK 463 >gi|197336274|ref|YP_002156880.1| 23S rRNA (uracil-5-)-methyltransferase [Vibrio fischeri MJ11] gi|226725398|sp|B5FAG4|RUMA_VIBFM RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|197317764|gb|ACH67211.1| 23S rRNA (uracil-5-)-methyltransferase [Vibrio fischeri MJ11] Length = 438 Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 96/362 (26%), Positives = 159/362 (43%), Gaps = 26/362 (7%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPN---LQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ 65 Q+E+Q+ K ++L+++M V +Q E + YR RA + + + F Sbjct: 97 QHEEQIVAKNEKLQELMKKQGVSQGEMVQPIMGEELSYRRRARISLMIN-KQTNQLDFGF 155 Query: 66 QTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHR 125 + K+ I +L+ L + + L L+ K Q+D V LI H Sbjct: 156 RKKQSKAIVNVRHCPVLVQELDQHLESLFTLLNQLKGKKNLGHVELVQADNGSVLLIRH- 214 Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIEN 185 + D + L + R + L+ A+ L+ +E + T IY ++ Sbjct: 215 -VADFNEKDHQALVNYCEERNLILYLMPEAD----VLNHVRGEEPFYLIDGTKIYFTPKD 269 Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 F Q N +N M+E L+ + D +L+L+CG GNFSL LA+ V+ +E V Sbjct: 270 -FIQVNRKVNEQMVEQALSWLDLNENDSVLDLFCGLGNFSLPLAKKVKTVVGIEGVDDMV 328 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 + A+ N NH++NV F QA E +++ S +F I +DP R+G Sbjct: 329 QRAKLNAERNHLSNV--------SFYQANLEEEASDQV----WASTKFTKILLDPARAGA 376 Query: 305 DDATVGMVQAYPH-ILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLL 362 + + P ++Y+SCNP +L RD +L + RL + D FP+T H+E L Sbjct: 377 AGVMETVAKLKPQTVVYVSCNPATLARDSQLLIQHGFKLTRLGMLDMFPHTGHLESMALF 436 Query: 363 VR 364 R Sbjct: 437 ER 438 >gi|291618632|ref|YP_003521374.1| RumA [Pantoea ananatis LMG 20103] gi|291153662|gb|ADD78246.1| RumA [Pantoea ananatis LMG 20103] Length = 467 Score = 90.5 bits (223), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 59/191 (30%), Positives = 95/191 (49%), Gaps = 24/191 (12%) Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 F Q N +N M+ +A D +L+L+CG GNF+L + + + VE V+ Sbjct: 269 FIQVNDTVNQQMVAKAIAWLDLQPEDRVLDLFCGMGNFTLPVGKSVQSAVGVEGVAALVQ 328 Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDPPRS 302 A YN N + NVK + + +E D+ + F + +DP R+ Sbjct: 329 QAEYNADVNALKNVKFFQHNLEE---------------DVSRQPWAMQGFNKVLLDPARA 373 Query: 303 GLDDATVGMVQAYPH-ILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHMECGV 360 G +V+ P ++Y+SCNP +L RD ++LS + +ER+A+ D FP+TRH+E V Sbjct: 374 GAAGVMAHVVKLSPECVVYVSCNPVTLARDSETLLSAGYQLERVAMLDMFPHTRHLESMV 433 Query: 361 LLVRK---PSG 368 L +K P+G Sbjct: 434 LFRKKYKCPAG 444 >gi|332289405|ref|YP_004420257.1| 23S rRNA 5-methyluridine methyltransferase [Gallibacterium anatis UMN179] gi|330432301|gb|AEC17360.1| 23S rRNA 5-methyluridine methyltransferase [Gallibacterium anatis UMN179] Length = 435 Score = 90.5 bits (223), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 61/182 (33%), Positives = 88/182 (48%), Gaps = 17/182 (9%) Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 F Q N IN M++ L D +L+L+CG GNF+L LA+ RV+ +E VE Sbjct: 267 FIQVNRQINEKMVQTALNWLDPQADDQILDLFCGMGNFTLPLAQQSKRVVGIEGVAQMVE 326 Query: 246 AARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 ARYN N + N + S F + + +FN+ I +DPPRSG Sbjct: 327 KARYNAQQNGITNALFHQADLSVPFANQIWAQEKFNK-------------ILLDPPRSGA 373 Query: 305 DDATVGMVQAYPH-ILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLL 362 +++ ILY+SCNP +L RD IL + +E+ A+ D FP T H+E L Sbjct: 374 AFVLNHLIELQAEKILYVSCNPATLVRDAKILVENGYHLEKSAMIDMFPQTGHLESITLF 433 Query: 363 VR 364 + Sbjct: 434 SK 435 >gi|145342758|ref|XP_001416256.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144576481|gb|ABO94549.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 234 Score = 90.5 bits (223), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 70/212 (33%), Positives = 108/212 (50%), Gaps = 25/212 (11%) Query: 154 RANKTKICLDRDYVDE--RLTVAGRTLIYRQIENSFTQPNAGI---NVHMLEWVLAATKG 208 R K+ + RDYV E RL V GR+++++ +E SF+ PN G+ + L + A G Sbjct: 21 RKKTPKLVVGRDYVTETTRL-VDGRSVVFKHVEGSFSNPNGGVAELTANHLVRICADIAG 79 Query: 209 IQGDLLELYCGNGNFSLVLARHF-DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267 + +ELY G GN + +A F AVEI VEAAR N A N V +IV ++ Sbjct: 80 PKTKFIELYAGCGNHTCCMAPQFPGGAFAVEIDPVLVEAARENFARNGV-RAEIVCERAE 138 Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYPHILYISCNPD 326 ++ + RE N D D+ + VDPPR GLD T+ +V + + ++Y++C+ + Sbjct: 139 DWIAS--RESPTN---DRDV------VLLVDPPRGGLDARTLDVVTREFDDVIYVACDCE 187 Query: 327 SLCRDL-----SILSTTHTIERLALFDQFPYT 353 SL RD+ + + LA FD P + Sbjct: 188 SLKRDIDDERVGFAARGFELTSLACFDHAPTS 219 >gi|170757395|ref|YP_001782496.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum B1 str. Okra] gi|169122607|gb|ACA46443.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum B1 str. Okra] Length = 458 Score = 90.5 bits (223), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 63/241 (26%), Positives = 112/241 (46%), Gaps = 31/241 (12%) Query: 133 ECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNA 192 EC ++ LH + + + +K +I RDY+ E L L ++ +F Q N+ Sbjct: 239 ECKGEIKGILHTINDTLSDVVQVDKLEILYGRDYIIEELL----GLKFKIAPEAFFQTNS 294 Query: 193 GINVHMLEWVLAATKGIQGD-----LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA 247 E + + K GD + +LYCG G ++A +V+ VE+ + +V+AA Sbjct: 295 ----KGAEKLYSIVKDFLGDASSKVVFDLYCGTGTIGQIVAPKAKKVIGVELIEEAVKAA 350 Query: 248 RYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307 N N +NN + + + + ++++ + I +DPPR G+ Sbjct: 351 NENAKLNGLNNCEFIAGDVAKVIKDVKQKPDI---------------IILDPPRPGVHPV 395 Query: 308 TVGMVQAY--PHILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 + V + I+Y+SCNP +L DL ++ + +E++ D FP+T H+E VLL R Sbjct: 396 ALEYVVKFEPKEIIYVSCNPKTLVDDLKYLIDNGYKLEKVKGMDMFPHTPHVETCVLLQR 455 Query: 365 K 365 K Sbjct: 456 K 456 >gi|240103955|ref|YP_002960264.1| 23S rRNA (uracil-5-)-methyltransferase (rumA) [Thermococcus gammatolerans EJ3] gi|239911509|gb|ACS34400.1| 23S rRNA (uracil-5-)-methyltransferase (rumA) [Thermococcus gammatolerans EJ3] Length = 421 Score = 90.5 bits (223), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 65/184 (35%), Positives = 91/184 (49%), Gaps = 24/184 (13%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSF Q N+ V +L V +G G +L+LY G G F + LAR V +EI +V Sbjct: 256 NSFFQTNSYGAVELLREVAKRAEG--GRVLDLYSGVGTFGVYLARKGFSVEGIEINPFAV 313 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR-FKTIFVDPPRSG 303 E A N N V E F D D+ S + + T+ VDPPR+G Sbjct: 314 EMANRNAEINGV-------------------EARFRVGADKDVGSLQAYDTVIVDPPRAG 354 Query: 304 LDDATVG-MVQAYPH-ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVL 361 L V +VQ P ++Y+SCNP +L RDL+ L + +T+ + D FP+T H+E V Sbjct: 355 LHPKLVKRLVQKGPEKLIYVSCNPKTLARDLNELKSVYTVGGIIGLDMFPHTPHVEVVVE 414 Query: 362 LVRK 365 L R+ Sbjct: 415 LRRQ 418 >gi|304316338|ref|YP_003851483.1| RNA methyltransferase, TrmA family [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302777840|gb|ADL68399.1| RNA methyltransferase, TrmA family [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 450 Score = 90.5 bits (223), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 68/250 (27%), Positives = 120/250 (48%), Gaps = 46/250 (18%) Query: 137 RLRDALHARKYQIQLIG-------------RANKTKICLDRDYV-DERLTVAGRTLIYRQ 182 +L D L + K +LIG + K + RDY+ DE L + + + Sbjct: 224 KLVDELRSIKLNGKLIGILHTVNDSYSDAVKCEKLTVLYGRDYIMDEILGLKFKISAF-- 281 Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGD-----LLELYCGNGNFSLVLARHFDRVLAV 237 SF Q N+ E + + + G+ L +LYCG G +++A +V+ V Sbjct: 282 ---SFFQTNS----KGAEKLYSIAREFAGEISNKILFDLYCGTGTIGIIMAPLAKKVIGV 334 Query: 238 EIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFV 297 E+ + +V+AAR N N ++N++ + ++ +E N D+ + + Sbjct: 335 ELVEEAVDAARENARLNGLSNIQFIA------GDVAQKIKEINEKPDV---------VVL 379 Query: 298 DPPRSGLD-DATVGMVQAYPH-ILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTR 354 DPPR G++ A + +++ P I+Y+SCNP SL RDL + + + +E++ D FP+T Sbjct: 380 DPPRPGVNPKAILDIIKLNPEKIIYVSCNPVSLTRDLKMFNERQYKVEKVKCVDMFPHTP 439 Query: 355 HMECGVLLVR 364 H+EC L+ R Sbjct: 440 HVECVTLMSR 449 >gi|290511109|ref|ZP_06550478.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Klebsiella sp. 1_1_55] gi|289776102|gb|EFD84101.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Klebsiella sp. 1_1_55] Length = 434 Score = 90.5 bits (223), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 61/190 (32%), Positives = 95/190 (50%), Gaps = 31/190 (16%) Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIA 240 F Q N G+N M LEW+ +Q + +L+L+CG GNF+L LA V+ VE Sbjct: 263 FIQVNDGVNQQMVRTALEWL-----DLQPEDRVLDLFCGMGNFTLPLATRAAHVVGVEGV 317 Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFV 297 VE R N A N ++NV + +E D+ ++ F + + Sbjct: 318 PALVEKGRENAALNGLSNVTFFHENLEE---------------DVTRQAWAKHGFDKVLL 362 Query: 298 DPPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRH 355 DP R+G +++ P ++Y+SCNP +L RD ++L + I+RLA+ D FP+T H Sbjct: 363 DPARAGAPGVMPHIIKLAPRRVVYVSCNPATLARDSETLLQAGYQIQRLAMLDMFPHTGH 422 Query: 356 MECGVLLVRK 365 +E VL R+ Sbjct: 423 LESMVLFERR 432 >gi|206576756|ref|YP_002236864.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Klebsiella pneumoniae 342] gi|226725382|sp|B5XV15|RUMA_KLEP3 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|206565814|gb|ACI07590.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Klebsiella pneumoniae 342] Length = 434 Score = 90.5 bits (223), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 61/190 (32%), Positives = 95/190 (50%), Gaps = 31/190 (16%) Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIA 240 F Q N G+N M LEW+ +Q + +L+L+CG GNF+L LA V+ VE Sbjct: 263 FIQVNDGVNQQMVRTALEWL-----DLQPEDRVLDLFCGMGNFTLPLATRAAHVVGVEGV 317 Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFV 297 VE R N A N ++NV + +E D+ ++ F + + Sbjct: 318 PALVEKGRENAALNGLSNVTFFHENLEE---------------DVTRQAWAKHGFDKVLL 362 Query: 298 DPPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRH 355 DP R+G +++ P ++Y+SCNP +L RD ++L + I+RLA+ D FP+T H Sbjct: 363 DPARAGAPGVMPHIIKLAPRRVVYVSCNPATLARDSETLLQAGYQIQRLAMLDMFPHTGH 422 Query: 356 MECGVLLVRK 365 +E VL R+ Sbjct: 423 LESMVLFERR 432 >gi|323464007|gb|ADX76160.1| RNA methyltransferase, TrmA family [Staphylococcus pseudintermedius ED99] Length = 454 Score = 90.5 bits (223), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 49/155 (31%), Positives = 79/155 (50%), Gaps = 14/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +L+ YCG G SL +A H V VE+ ++E A+ N N +NN V ++++ Sbjct: 311 VLDAYCGIGTISLFMAPHAQHVYGVEVVPEAIEDAKRNARYNQLNNTTFVAGAAEDVILK 370 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCR 330 +++ + + VDPPR G D + + A I+Y+SCNP + R Sbjct: 371 WQQD------------GIQPDVVTVDPPRKGCDATFIETLNALAPKRIVYVSCNPSTQLR 418 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 D+ +LST + ++ + D FP+T H+E LLVRK Sbjct: 419 DIEMLSTQYELKEMTPVDMFPHTTHVETVALLVRK 453 >gi|328474127|gb|EGF44932.1| 23S rRNA m(5)U1939 methyltransferase [Vibrio parahaemolyticus 10329] Length = 439 Score = 90.5 bits (223), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 98/381 (25%), Positives = 164/381 (43%), Gaps = 66/381 (17%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQI---FRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66 Y+QQL K LRQ+M F ++ + E + YR RA ++ D + F + Sbjct: 98 YDQQLTHKQQTLRQLMRKFAGSDIDLDAPVLGESLGYRRRARVSLFVD-KKTRQLHFGFR 156 Query: 67 TKERMRIDYFMPGSLL---INALMIEMMATIRL--EPLLRAKLFQIDYLTSQSDQAIVTL 121 K+ +I +L +N L+ E+ + + +P +L ++ + + I Sbjct: 157 KKQSKQIAQVTDCPVLAPELNVLLPEVYSVLTAFKKP---EQLGHVELVLGDNGPCITLR 213 Query: 122 IYHRLLDD---AWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTL 178 L DD A E A R + +L+ L+ ++ + VAG Sbjct: 214 HLSNLADDEVSALVELATRHQASLY-------LMPETDQLNL------------VAGEVP 254 Query: 179 IYRQI-------ENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLAR 229 Y++ N+F Q N +N M+E + Q D +L+L+CG GNFSL +A+ Sbjct: 255 FYQEAGVKIPFAPNNFIQVNQAVNQKMVEQAIEWLDP-QSDERVLDLFCGLGNFSLPIAK 313 Query: 230 HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHS 289 V+ VE VE A N + N +NN +F A N +D D + Sbjct: 314 RAKHVVGVEGVAEMVEKASNNASLNQINNA--------QFYHA-------NLEQDFDGQA 358 Query: 290 Y---RFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDL-SILSTTHTIER 343 + +F + +DP R+G + V A ++Y+SCNP +L RD S+L + + + Sbjct: 359 WAAEKFDKVLLDPARAGA-SGIIDQVSALGAQRVVYVSCNPATLARDSQSLLEQGYQLTK 417 Query: 344 LALFDQFPYTRHMECGVLLVR 364 L + D FP+T H+E L + Sbjct: 418 LGMLDMFPHTSHLESMALFEK 438 >gi|68248938|ref|YP_248050.1| 23S rRNA 5-methyluridine methyltransferase [Haemophilus influenzae 86-028NP] gi|81336651|sp|Q4QNK7|RUMA_HAEI8 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|68057137|gb|AAX87390.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Haemophilus influenzae 86-028NP] Length = 438 Score = 90.5 bits (223), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 59/183 (32%), Positives = 89/183 (48%), Gaps = 17/183 (9%) Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 F Q N+ +N M+ L + Q D +L+L+CG GNF+L LA+ + +E V+ Sbjct: 269 FIQVNSALNERMINTALDWLELSQQDCVLDLFCGMGNFTLPLAKRVKSAVGIEGVFEMVQ 328 Query: 246 AARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 A N A N + N++ + + F + + FN+ I +DPPRSG Sbjct: 329 KAAQNAARNQIKNIEFFQADLDQSFVEQPWANQSFNK-------------ILLDPPRSGA 375 Query: 305 DDATVGMVQ-AYPHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLL 362 A + + ILY+SCNP +L RD IL + IE+ A+ D FP+T H+E L Sbjct: 376 AFALNALCELKAEKILYVSCNPATLVRDAEILCDFGYKIEKSAVIDMFPHTGHLESITLF 435 Query: 363 VRK 365 K Sbjct: 436 TTK 438 >gi|95929630|ref|ZP_01312372.1| RNA methyltransferase, TrmA family [Desulfuromonas acetoxidans DSM 684] gi|95134327|gb|EAT15984.1| RNA methyltransferase, TrmA family [Desulfuromonas acetoxidans DSM 684] Length = 424 Score = 90.1 bits (222), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 102/372 (27%), Positives = 157/372 (42%), Gaps = 45/372 (12%) Query: 10 YEQQLAEK----VD------RLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLY 59 YEQQ K VD R+ Q ++ VP Q F YR R +F ++ Sbjct: 82 YEQQCRWKQQIFVDSCVRHGRIDQGVIRDLVPAPQEF-----GYRSRVQFKCYNSPQGFI 136 Query: 60 HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119 + + + + + + +L I A M T+ + + + QID SD A+ Sbjct: 137 LGFYRRGSHNVIDVRHCPVIALPIAAQMTAWR-TLFDGSVYASGVSQIDVAVG-SDDALR 194 Query: 120 TLIYHRLLDD----AWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175 T++++R + AW L L A + L+ K L + VD + V Sbjct: 195 TIVHYRGAETEAFCAW------LAGCLDAVDGAV-LVQTGRKNPQILLQGQVDLAIRVDE 247 Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELYCGNGNFSLVLARHFDRV 234 + F Q + N ++ V+ AA Q +L+LYCG GNFSL LAR V Sbjct: 248 PPMELHYGPGGFAQVHLEQNRQLVARVIEAAEVTAQDAVLDLYCGMGNFSLPLARRAGAV 307 Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294 + VE PS+ A N + N S + F RR + Sbjct: 308 VGVEDYAPSISYADRNRDTLGLTNATFHACSVETFLGRWRRTAD---------------V 352 Query: 295 IFVDPPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYT 353 I +DPPRSG +A GM++ P I+Y+SC+ +L RDL+ L+ ++T+ + D FP T Sbjct: 353 IVLDPPRSGAREAVAGMMRCRPRRIVYVSCDQQTLMRDLTALAQSYTVTSIQALDMFPQT 412 Query: 354 RHMECGVLLVRK 365 H E +L R+ Sbjct: 413 CHTEVLAVLDRQ 424 >gi|315653825|ref|ZP_07906741.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus iners ATCC 55195] gi|315488521|gb|EFU78167.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus iners ATCC 55195] Length = 447 Score = 90.1 bits (222), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 53/156 (33%), Positives = 78/156 (50%), Gaps = 15/156 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ Y G G L +A+H +VL VEI + +V+ A+ N N +NN + ++E Sbjct: 304 VIDAYSGIGTIGLSVAKHVKKVLGVEIVRDAVKDAKKNAILNGINNAEYFEGKAEELMPQ 363 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCR 330 E + IFVDPPR GL D + V P I+YISCNP ++ R Sbjct: 364 WANE------------GLKTDVIFVDPPRKGLTDTFIKAAVATSPKKIVYISCNPATMIR 411 Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRK 365 DL I + + + + D FP T H+EC VL+ RK Sbjct: 412 DLQIFQAAGYDFDCIDPVDMFPQTPHVECVVLMSRK 447 >gi|160915380|ref|ZP_02077592.1| hypothetical protein EUBDOL_01388 [Eubacterium dolichum DSM 3991] gi|158432771|gb|EDP11060.1| hypothetical protein EUBDOL_01388 [Eubacterium dolichum DSM 3991] Length = 542 Score = 90.1 bits (222), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 57/184 (30%), Positives = 93/184 (50%), Gaps = 15/184 (8%) Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 SF Q N + + + + KG + ++E Y G G SL L D ++ +E K +V Sbjct: 269 SFFQLNTAQAKVLYQTIASLVKGHKKRIVEAYSGIGAISLYLRDKADEIIGIETIKDAVV 328 Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD 305 A N NH +V+ + A + ++ K+ID+ + VDPPRSGLD Sbjct: 329 NANQNAKRNHCEHVRFL------CDDAASKLTYLSKNKEIDV-------LVVDPPRSGLD 375 Query: 306 DATVGMV--QAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363 DA + + I+Y+SCNP +L ++L++L + ++R+ D FP T+H+E VLL Sbjct: 376 DAMLECLLRSKIKEIIYVSCNPATLGKNLAVLQEKYRVQRVIPIDMFPNTQHVETVVLLS 435 Query: 364 RKPS 367 K + Sbjct: 436 HKKA 439 >gi|296104454|ref|YP_003614600.1| 23S rRNA 5-methyluridine methyltransferase [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295058913|gb|ADF63651.1| 23S rRNA 5-methyluridine methyltransferase [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 432 Score = 90.1 bits (222), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 60/180 (33%), Positives = 91/180 (50%), Gaps = 17/180 (9%) Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 F Q N G+N M+E L D +L+L+CG GNF+L LAR V+ VE V Sbjct: 263 FIQVNDGVNQQMIETALTWLDVQPTDRVLDLFCGMGNFTLPLARKAASVVGVEGVDALVA 322 Query: 246 AARYNIAANHVNNVKIVRMSSKE-FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 + N N + NV + +E TQ ++ F++ I +DP R+G Sbjct: 323 KGQENAQQNGLQNVTFFHQNLEEDVTQQPWAKQGFDK-------------ILLDPARAGA 369 Query: 305 DDATVGMVQAYPH-ILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHMECGVLL 362 +++ P ++Y+SCNP +L RD ++LS + I+RLA+ D FP+T H+E VL Sbjct: 370 PGVMQHIIKLAPKRVVYVSCNPATLARDSEALLSAGYQIQRLAMLDMFPHTGHLESMVLF 429 >gi|195953997|ref|YP_002122287.1| RNA methyltransferase, TrmA family [Hydrogenobaculum sp. Y04AAS1] gi|195933609|gb|ACG58309.1| RNA methyltransferase, TrmA family [Hydrogenobaculum sp. Y04AAS1] Length = 415 Score = 90.1 bits (222), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 100/376 (26%), Positives = 163/376 (43%), Gaps = 67/376 (17%) Query: 10 YEQQLAEKVDRLRQMMLAF---QVPNLQ-IFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ 65 Y +QL +K + L++ + ++ NL I EP HYR R +F + + + F Sbjct: 81 YTEQLTQKSNILKETLKKIGNIEIENLNGIIYDEPYHYRNRVKFKVRNK-----ELGFVG 135 Query: 66 QTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHR 125 ++ +++++ S IN LM P L+ + + +++ Y Sbjct: 136 VDEDFVKVEHCPISSKAINDLM----------PFLKE-------FAKHFNPSWISVFY-- 176 Query: 126 LLDDAWRECAIRLR-----DALHARKYQIQLIGRANKTKICLDRDYVDER-----LTVAG 175 D +E ++ D +K++ L + N I L +D D+R L++ Sbjct: 177 --SDTQKEYMVKFASYDYIDKEKLKKFKEHLTPK-NVVGITLVKD--DKREDKIILSIGT 231 Query: 176 R-TLI------YRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA 228 T I YR NSF Q N + +L+ +L +L+ Y G G F L LA Sbjct: 232 PFTFIELLKIKYRISVNSFFQVNIKVAQKLLQTLLEKENYFD-RVLDDYGGVGLFGLHLA 290 Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288 R V +I K S+ A Y+ N++NNV +S F + K + H Sbjct: 291 RRSGSVDIADINKSSINDAEYSAKINNINNVSFYVQNSYVFLK-----------KSLYKH 339 Query: 289 SYRFKTIFVDPPRSGLDDATVGMVQ-AYP-HILYISCNPDSLCRDLSILSTTHTIERLAL 346 + + +DPPRSGL +G++ P +I YISC P SL RDL +L + I+ + + Sbjct: 340 A---NLLVLDPPRSGLSKEEIGLILLGKPDYIWYISCEPSSLARDLKLLGKKYQIKEIYM 396 Query: 347 FDQFPYTRHMECGVLL 362 D FP T H+E V L Sbjct: 397 ADMFPQTYHIETAVKL 412 >gi|283835447|ref|ZP_06355188.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Citrobacter youngae ATCC 29220] gi|291068628|gb|EFE06737.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Citrobacter youngae ATCC 29220] Length = 432 Score = 90.1 bits (222), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 61/181 (33%), Positives = 91/181 (50%), Gaps = 15/181 (8%) Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 F Q N G+N M+ L GD +L+L+CG GNF+L LAR V+ VE VE Sbjct: 263 FIQVNEGVNQQMVARALEWLDVQPGDRVLDLFCGMGNFTLPLARRAASVVGVEGVPALVE 322 Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD 305 AR N N ++NV + +E R+ N F + +DP R+G Sbjct: 323 KARENALNNGLHNVTFFHENLEE--DVTRQPWAKN----------GFDKVLLDPARAGAA 370 Query: 306 DATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHMECGVLLV 363 +++ P ++Y+SCNP +L RD ++L+ + I +LA+ D FP+T H+E VL Sbjct: 371 GVMQHIIKLEPIRVVYVSCNPATLARDSDALLNAGYAIRQLAMLDMFPHTGHLESMVLFE 430 Query: 364 R 364 R Sbjct: 431 R 431 >gi|254245217|ref|ZP_04938539.1| hypothetical protein PA2G_06108 [Pseudomonas aeruginosa 2192] gi|126198595|gb|EAZ62658.1| hypothetical protein PA2G_06108 [Pseudomonas aeruginosa 2192] Length = 450 Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 66/193 (34%), Positives = 92/193 (47%), Gaps = 25/193 (12%) Query: 177 TLIYRQIENSFTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD 232 TL YR F Q NA +N M L+W LA T + +L+L+CG GNFSL LAR Sbjct: 273 TLAYR--PGDFVQVNAPVNESMIRQALDW-LAPTADER--VLDLFCGLGNFSLPLARRVA 327 Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNRLKDIDIHSYR 291 RV+ VE VE A N AN + N + SK +A+ E+ F Sbjct: 328 RVVGVEGVAAMVERAGANALANGLGNAHFFQADLSKALAEALWAEQGFT----------- 376 Query: 292 FKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSILS-TTHTIERLALFDQ 349 + +DPPR G +A M ++Y+SCNP +L RD ++ + ++R + D Sbjct: 377 --AVLLDPPRDGAFEAVREMSSLGARRVVYVSCNPATLARDAGEMARQGYRLKRAGILDM 434 Query: 350 FPYTRHMECGVLL 362 FP T H+E L Sbjct: 435 FPQTAHVEAMALF 447 >gi|260913270|ref|ZP_05919752.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Pasteurella dagmatis ATCC 43325] gi|260632857|gb|EEX51026.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Pasteurella dagmatis ATCC 43325] Length = 436 Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 57/178 (32%), Positives = 90/178 (50%), Gaps = 23/178 (12%) Query: 187 FTQPNAGINVHM----LEWV-LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241 F Q NA +N+ M L+W+ L +T + L+L+CG GNF+L L+R V+ +E + Sbjct: 267 FIQVNADLNLKMIATALDWLELNSTDNV----LDLFCGMGNFTLPLSRKVKSVIGIEGVQ 322 Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301 V+ A+ N N NV+ + + + R D F I +DPPR Sbjct: 323 EMVQKAQKNAEQNQCANVQFYQTNLDQ------------RFSDQAWAKLPFDKILLDPPR 370 Query: 302 SGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHME 357 +G A + + ILY+SCNP +L RD IL+ + + ++A+ D FP+T H+E Sbjct: 371 TGAAFALNALCELGAQKILYVSCNPATLIRDTEILADFGYRLSKVAMIDMFPHTGHLE 428 >gi|148380817|ref|YP_001255358.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum A str. ATCC 3502] gi|148290301|emb|CAL84425.1| putative RNA methyltransferase [Clostridium botulinum A str. ATCC 3502] Length = 456 Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 61/241 (25%), Positives = 112/241 (46%), Gaps = 31/241 (12%) Query: 133 ECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNA 192 EC ++ LH + + + +K +I RDY+ E L L ++ +F Q N+ Sbjct: 239 ECKGEIKGILHTINDTLSDVVQVDKLEILYGRDYIIEELL----GLKFKIAPEAFFQTNS 294 Query: 193 GINVHMLEWVLAATKGIQGD-----LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA 247 E + + K GD + +LYCG G ++A +V+ VE+ + +V+AA Sbjct: 295 ----KGAEKLYSIVKDFLGDASSKVVFDLYCGTGTIGQIVAPKAKKVIGVELIEEAVKAA 350 Query: 248 RYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307 N N +NN + + + + ++++ + I +DPPR G+ Sbjct: 351 NENAKLNGLNNCEFIAGDVAKVIKDVKQKPDI---------------IILDPPRPGVHPV 395 Query: 308 TVGMVQAY--PHILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 + V + I+Y+SCNP +L DL ++ + +E++ D FP+T H+EC V + + Sbjct: 396 ALEYVVKFEPKEIIYVSCNPKTLVDDLKYLIDNGYKLEKVKGMDMFPHTPHVECVVKIEK 455 Query: 365 K 365 K Sbjct: 456 K 456 >gi|301169038|emb|CBW28635.1| 23S rRNA (uracil-5)-methyltransferase [Haemophilus influenzae 10810] Length = 438 Score = 89.7 bits (221), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 59/183 (32%), Positives = 89/183 (48%), Gaps = 17/183 (9%) Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 F Q N+ +N M+ L + Q D +L+L+CG GNF+L LA+ + +E V+ Sbjct: 269 FIQVNSALNERMVNTALDWLELSQQDCVLDLFCGMGNFTLPLAKRVKSAVGIEGVFEMVQ 328 Query: 246 AARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 A N A N + N++ + + F + + FN+ I +DPPRSG Sbjct: 329 KAAQNAARNQIKNIEFFQADLDQSFVEQPWANQSFNK-------------ILLDPPRSGA 375 Query: 305 DDATVGMVQ-AYPHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLL 362 A + + ILY+SCNP +L RD IL + IE+ A+ D FP+T H+E L Sbjct: 376 AFALNALCELKAEKILYVSCNPATLVRDAEILRDFGYKIEKSAVIDMFPHTGHLESITLF 435 Query: 363 VRK 365 K Sbjct: 436 TTK 438 >gi|282858081|ref|ZP_06267276.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Pyramidobacter piscolens W5455] gi|282584003|gb|EFB89376.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Pyramidobacter piscolens W5455] Length = 541 Score = 89.7 bits (221), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 57/185 (30%), Positives = 91/185 (49%), Gaps = 21/185 (11%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 SF Q N G + + + +G +LLELYCG G + L+R + AVE+ +V Sbjct: 278 TSFFQANPGQAEQLFAYAASLAEG--QNLLELYCGVGALTAFLSRKAKTIRAVEVWASAV 335 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AR N +N + + +++ +++ L+ ID + VDPPR+G Sbjct: 336 ALARENGESNRIEGLTVLQGAAENVVAPA-------DLEGID-------CVVVDPPRAGC 381 Query: 305 DDATVGMVQA--YPHILYISCNPDSLCRDLSILSTTHTI---ERLALFDQFPYTRHMECG 359 D + + + A P +LYISCNP +L RD ++L + + L +FD FP T H+E Sbjct: 382 DKSLIETIAASRVPRVLYISCNPATLARDAALLRDAGYVLDMDSLKVFDMFPQTCHVETV 441 Query: 360 VLLVR 364 LL + Sbjct: 442 CLLSK 446 >gi|104780552|ref|YP_607050.1| 23S rRNA 5-methyluridine methyltransferase [Pseudomonas entomophila L48] gi|143581542|sp|Q1IDL9|RUMA_PSEE4 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|95109539|emb|CAK14240.1| 23S rRNA m5U1939 methyltransferase RumA [Pseudomonas entomophila L48] Length = 452 Score = 89.7 bits (221), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 61/191 (31%), Positives = 90/191 (47%), Gaps = 17/191 (8%) Query: 175 GRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNFSLVLARHFDR 233 G L +R F Q NA +N M++ LA +L+L+CG GNF+L LAR Sbjct: 273 GMELAWR--PGDFVQVNAQVNTLMIQQALAWLAPQAHERVLDLFCGLGNFALPLARQARE 330 Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293 V+AVE + VE A N H NNV R + +Q L + + F Sbjct: 331 VVAVEGVQAMVERAEANA---HGNNVYNARFFQADLSQP---------LAGAEWVAEGFS 378 Query: 294 TIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFP 351 + +DPPR G + G+ + ++Y+SCNP +L RD +L + ++R + D FP Sbjct: 379 AVLLDPPRDGAYEVVQGIARLGAKRLVYVSCNPATLARDTQVLVGQGYRLKRAGILDMFP 438 Query: 352 YTRHMECGVLL 362 T H+E L Sbjct: 439 QTAHVEAMALF 449 >gi|229829394|ref|ZP_04455463.1| hypothetical protein GCWU000342_01484 [Shuttleworthia satelles DSM 14600] gi|229791825|gb|EEP27939.1| hypothetical protein GCWU000342_01484 [Shuttleworthia satelles DSM 14600] Length = 468 Score = 89.7 bits (221), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 66/187 (35%), Positives = 92/187 (49%), Gaps = 10/187 (5%) Query: 186 SFTQPNAGINVHMLEWVL--AATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 SF Q N + E L A KG Q + +LYCG G SL LAR +V VEI + Sbjct: 287 SFYQVNPYQTARLYEKALEYADLKG-QESVWDLYCGIGTISLFLARKAGQVYGVEIIPEA 345 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 +E A+ N N + N ++E R D +H I VDPPR G Sbjct: 346 IEDAKANARRNGIENAHFFVGKAEEILPDFYEGRRDAVAGDA-LHP---DVIVVDPPRKG 401 Query: 304 LDDATV-GMVQAYP-HILYISCNPDSLCRDLSILS-TTHTIERLALFDQFPYTRHMECGV 360 DD + M++ P I+Y+SC+P +L RDL L+ ++++R+ DQFP T H+EC Sbjct: 402 CDDICLQTMLRMRPDRIVYVSCDPATLARDLKTLAEGGYSLQRVCPVDQFPQTTHVECIA 461 Query: 361 LLVRKPS 367 L+ R S Sbjct: 462 LIQRVKS 468 >gi|160893502|ref|ZP_02074287.1| hypothetical protein CLOL250_01053 [Clostridium sp. L2-50] gi|156864897|gb|EDO58328.1| hypothetical protein CLOL250_01053 [Clostridium sp. L2-50] Length = 483 Score = 89.7 bits (221), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 98/388 (25%), Positives = 171/388 (44%), Gaps = 51/388 (13%) Query: 9 QYEQQLAEKVDRLRQMMLAF-QVPNLQIFR------SEPIHYRMRAEFHIWHDGDDLYHI 61 YE+QL K +++R+ + ++ N EP HYR +A+F + D + I Sbjct: 114 SYEKQLEYKWNKVRECLRRIGKIENPDTLMEPIYGMKEPYHYRNKAQFPVGRDKNGNIVI 173 Query: 62 MF-DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKL--FQIDYLTSQSDQAI 118 F +T + D G+ + + ++ P++RA L + I + Q + Sbjct: 174 GFYAGRTHSIIDSDTCAIGAEVNDQIL----------PIIRAFLTEYNISTYNETTGQGL 223 Query: 119 VTLIYHRL---LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD--RDYVDERLTV 173 V I R+ + + + HA + +L + T ICL+ + ++ L Sbjct: 224 VRHILTRVGFTTGEVMVCLIVNGKKLPHADELISRLTKISGMTSICLNINTEKTNKILGP 283 Query: 174 AGRTL-------------IYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCG 219 +TL YR SF Q N + E L A + + ++YCG Sbjct: 284 TCKTLWGSPYITDYIGNVKYRISPLSFYQVNPVQTKVLYEKALEYADLNGEETVWDMYCG 343 Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279 G SL LA+ +V VEI ++ AR N N ++NV+ ++E A+ + Sbjct: 344 IGTISLFLAQKAKQVYGVEIVPQAILDARKNAELNDIHNVEFFTGKAEEVVPAIYEKGGD 403 Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCRDLSILS- 336 D+ + VDPPR G D + +++ P ++Y+SC+P +L RD++IL+ Sbjct: 404 GSHADV---------VVVDPPRKGCDKVLLDTLIRMNPKRLVYVSCDPATLARDIAILTP 454 Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVR 364 + +E++A+ DQF +T H+E VLL R Sbjct: 455 AGYHLEKVAVVDQFGHTGHVESVVLLSR 482 >gi|257451727|ref|ZP_05617026.1| tRNA (Uracil-5-) -methyltransferase [Fusobacterium sp. 3_1_5R] gi|317058286|ref|ZP_07922771.1| tRNA (Uracil-5-)-methyltransferase [Fusobacterium sp. 3_1_5R] gi|313683962|gb|EFS20797.1| tRNA (Uracil-5-)-methyltransferase [Fusobacterium sp. 3_1_5R] Length = 453 Score = 89.7 bits (221), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 92/385 (23%), Positives = 167/385 (43%), Gaps = 44/385 (11%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPNLQ-----IFRSEPIHYRMRA-EFHIWHDGDDLYHIM 62 +YE QL K ++++M N I E HYR + E H G + Sbjct: 87 KYEAQLQYKTAMVKEVMERIGKLNSNLVLDCIASPEEKHYRNKVIEPFSKHKGKIITG-F 145 Query: 63 FDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLL-------RAKLFQIDYLTSQSD 115 F +++ E ++ M S L N ++ E L + L I T+ S Sbjct: 146 FQRRSHEVFEVEENMLNSKLGNKIIETFKQYANQEKLSVYDEKKHQGLLRNIMIRTNSSQ 205 Query: 116 QAIVTLIYH-RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVA 174 +A++ LI + + ++++ ++ +++ + K I L KT + L D+ + + Sbjct: 206 EAMLVLIVNAKKIEESLKKILLQMPKNIPELK-SIYLSLNTRKTNVVLG----DKNICIW 260 Query: 175 GRTLIYRQI--------ENSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSL 225 G + ++ +SF Q N H+ E L+ I+ ++++ Y G G + Sbjct: 261 GEKTLKEELFGIHFHISPSSFFQINVPQTKHLYEKALSLIPKIENKNVVDAYSGTGTIGM 320 Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285 +L+R +V A+EI + + NH++N++ + E E +RL + Sbjct: 321 LLSRKAKKVYAIEIVESASRDGAKTAKENHIDNIEFI---------CGPVEVELDRLLE- 370 Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTT-HTIE 342 I DPPR G++++ + V P ++YISCNP +L RDL I++ + + Sbjct: 371 --EGKNLDAIVFDPPRKGIEESILRKVAEVGIPEMVYISCNPSTLARDLKIMAECGYQVG 428 Query: 343 RLALFDQFPYTRHMECGVLLVRKPS 367 + FD FP T H+EC L+ R S Sbjct: 429 EIQPFDMFPQTSHVECIALIQRVKS 453 >gi|237809371|ref|YP_002893811.1| RNA methyltransferase, TrmA family [Tolumonas auensis DSM 9187] gi|237501632|gb|ACQ94225.1| RNA methyltransferase, TrmA family [Tolumonas auensis DSM 9187] Length = 447 Score = 89.7 bits (221), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 58/216 (26%), Positives = 106/216 (49%), Gaps = 22/216 (10%) Query: 155 ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-- 212 ++ ++C + +++ L L + +SF Q N + L + ++GD Sbjct: 249 GSQQRVCYGAEAIEDEL----HGLTFSISAHSFYQVNPQQTDQLYATALQFAE-LKGDET 303 Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 ++++YCG G SL LA+ +V+ +E+ ++E AR N N ++N + ++E A Sbjct: 304 VVDIYCGIGTISLYLAQEASKVIGIEVVSQAIEDARSNAKRNQLDNTEFYVGKAEEVVPA 363 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCR 330 + + R + VDPPR G + A + + A I+Y+SC+PDSL R Sbjct: 364 LYAQ------------GLRADVVVVDPPRKGCELAVLNTMAAMTPERIVYVSCDPDSLAR 411 Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRK 365 DL++L + I ++ D FP++ H+E V L+R Sbjct: 412 DLAVLQQAGYAITKVQPVDMFPHSMHVETVVQLIRS 447 >gi|323978604|gb|EGB73686.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli TW10509] Length = 433 Score = 89.7 bits (221), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 62/189 (32%), Positives = 93/189 (49%), Gaps = 31/189 (16%) Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIA 240 F Q NAG+N M LEW+ +Q + +L+L+CG GNF+L LA V+ VE Sbjct: 263 FIQVNAGVNQKMVARALEWL-----DVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGV 317 Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFV 297 VE + N N ++NV + +E D+ + F + + Sbjct: 318 PALVEKGQQNARLNSLHNVTFYHENLEE---------------DVTKQPWAKNGFDKVLL 362 Query: 298 DPPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRH 355 DP R+G +++ P I+Y+SCNP +L RD ++L +TI RLA+ D FP+T H Sbjct: 363 DPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGH 422 Query: 356 MECGVLLVR 364 +E VL R Sbjct: 423 LESMVLFSR 431 >gi|331654268|ref|ZP_08355268.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli M718] gi|331047650|gb|EGI19727.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli M718] Length = 433 Score = 89.7 bits (221), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 62/189 (32%), Positives = 92/189 (48%), Gaps = 31/189 (16%) Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIA 240 F Q NAG+N M LEW+ +Q + +L+L+CG GNF+L LA V+ VE Sbjct: 263 FIQVNAGVNQKMVARALEWL-----DVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGV 317 Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFV 297 VE + N N + NV + +E D+ + F + + Sbjct: 318 SALVEKGQQNARLNGLQNVTFYHENLEE---------------DVTKQPWAKNGFDKVLL 362 Query: 298 DPPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRH 355 DP R+G +++ P I+Y+SCNP +L RD ++L +TI RLA+ D FP+T H Sbjct: 363 DPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGH 422 Query: 356 MECGVLLVR 364 +E VL R Sbjct: 423 LESMVLFSR 431 >gi|157148321|ref|YP_001455640.1| 23S rRNA 5-methyluridine methyltransferase [Citrobacter koseri ATCC BAA-895] gi|226725378|sp|A8ANZ1|RUMA_CITK8 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|157085526|gb|ABV15204.1| hypothetical protein CKO_04138 [Citrobacter koseri ATCC BAA-895] Length = 432 Score = 89.7 bits (221), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 63/186 (33%), Positives = 91/186 (48%), Gaps = 25/186 (13%) Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIA 240 F Q N G+N M LEW+ IQ D +L+L+CG GNF+L LA V+ VE Sbjct: 263 FIQVNEGVNQKMVARALEWL-----DIQPDDRVLDLFCGMGNFTLPLATRAASVVGVEGV 317 Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300 VE R N N + NV + +E + + F I +DP Sbjct: 318 PALVEKGRENARRNGLQNVTFFHENLEEDVTKQQWAKN------------GFDKILLDPA 365 Query: 301 RSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHMEC 358 R+G +++ P I+Y+SCNP +L RD ++L+ + I+RLA+ D FP+T H+E Sbjct: 366 RAGAAGVMKHIIKLKPIRIVYVSCNPATLARDSDALLNAGYQIQRLAMLDMFPHTGHLES 425 Query: 359 GVLLVR 364 VL R Sbjct: 426 MVLFER 431 >gi|152971649|ref|YP_001336758.1| 23S rRNA 5-methyluridine methyltransferase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238896246|ref|YP_002920982.1| 23S rRNA 5-methyluridine methyltransferase [Klebsiella pneumoniae NTUH-K2044] gi|226725383|sp|A6TD57|RUMA_KLEP7 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|150956498|gb|ABR78528.1| 23S rRNA (uracil-5-)-methyltransferase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238548564|dbj|BAH64915.1| 23S rRNA (uracil-5-)-methyltransferase [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 434 Score = 89.7 bits (221), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 60/188 (31%), Positives = 93/188 (49%), Gaps = 27/188 (14%) Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 F Q N G+N M LEW+ + +L+L+CG GNF+L LA V+ VE Sbjct: 263 FIQVNDGVNQQMVRTALEWLDLRP---EDRVLDLFCGMGNFTLPLATRAAHVVGVEGVPA 319 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDP 299 VE R N A N ++NV + +E D+ ++ F + +DP Sbjct: 320 LVEKGRENAARNGLSNVTFFHENLEE---------------DVTRQAWAKHGFDKVLLDP 364 Query: 300 PRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHME 357 R+G +++ P ++Y+SCNP +L RD ++L + I+RLA+ D FP+T H+E Sbjct: 365 ARAGAPGVMPHIIKLAPRRVVYVSCNPATLARDSETLLQAGYQIQRLAMLDMFPHTGHLE 424 Query: 358 CGVLLVRK 365 VL R+ Sbjct: 425 SMVLFERR 432 >gi|225026873|ref|ZP_03716065.1| hypothetical protein EUBHAL_01127 [Eubacterium hallii DSM 3353] gi|224955797|gb|EEG37006.1| hypothetical protein EUBHAL_01127 [Eubacterium hallii DSM 3353] Length = 471 Score = 89.7 bits (221), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 56/153 (36%), Positives = 84/153 (54%), Gaps = 14/153 (9%) Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274 +LYCG G SL LA+ +V VEI K +++ AR N A NH++NV+ ++E A Sbjct: 327 DLYCGIGTISLFLAQKAKQVYGVEIIKEAIDDARRNAALNHMDNVEFFVGKAEEVVPA-- 384 Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCRDL 332 + + IH I VDPPR G D + M+ P I+Y+SC+P +L RDL Sbjct: 385 ------QYEKTGIHP---DVIVVDPPRKGCDAILLNTMLDMAPKRIVYVSCDPATLARDL 435 Query: 333 SIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364 IL +T+E++++ DQF ++ H+E L R Sbjct: 436 KILCEEKYTLEKVSVVDQFSHSVHVESVCALKR 468 >gi|332798852|ref|YP_004460351.1| TrmA family RNA methyltransferase [Tepidanaerobacter sp. Re1] gi|332696587|gb|AEE91044.1| RNA methyltransferase, TrmA family [Tepidanaerobacter sp. Re1] Length = 460 Score = 89.7 bits (221), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 62/208 (29%), Positives = 96/208 (46%), Gaps = 26/208 (12%) Query: 168 DERLTVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGD--LLELY 217 ++ +T+ G IY I + SF Q N I +L + GI D +L+LY Sbjct: 260 EKNITLYGSPYIYDYIGDIKFRLSPLSFFQVNP-IQAEVLYNKVLEYAGITQDEIVLDLY 318 Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277 CG G +L LA+ + +E+ +V AR N N +NN + + +++ M E Sbjct: 319 CGTGTITLFLAQKAKKAYGIELVSQAVADARLNAKINGINNAEFIEGAAEAVLPKMAEE- 377 Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSIL 335 + I VDPPR G D+ T+ + + I+Y+SCNP +L RDL L Sbjct: 378 -----------GIKPDIIVVDPPRRGCDEKTLKTITKISPKKIIYVSCNPATLARDLRYL 426 Query: 336 S-TTHTIERLALFDQFPYTRHMECGVLL 362 + ++ D FP T H+EC VL+ Sbjct: 427 EDKGYKTQKAQPVDMFPQTSHVECVVLM 454 >gi|90415716|ref|ZP_01223650.1| RNA methyltransferase, TrmA family protein [marine gamma proteobacterium HTCC2207] gi|90333039|gb|EAS48209.1| RNA methyltransferase, TrmA family protein [marine gamma proteobacterium HTCC2207] Length = 439 Score = 89.7 bits (221), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 64/205 (31%), Positives = 100/205 (48%), Gaps = 20/205 (9%) Query: 165 DYVDERLTVAGRTLIYRQIE-NSFTQPNAGINVHMLEWVLAATKGIQGD----LLELYCG 219 D D+ L V I Q+E F Q N+ IN M++ VL + + ++L+CG Sbjct: 246 DGGDQALHVVLNDRIELQVEPGQFVQVNSEINRQMIDQVLDLVRTPNSERASVAVDLFCG 305 Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279 +GNFSL LA FDRV+ +E V A+ N N+V+N + V +T MR+ + Sbjct: 306 SGNFSLPLAAQFDRVIGIEGLSELVGKAQENAQRNNVSNAEFVVSDLSNWT-GMRKIK-- 362 Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDLSIL-ST 337 + + +DPPRSG +V+ ++YISC+P ++ RDL +L Sbjct: 363 ----------GKVDLVLLDPPRSGAAGVMPWVVKTKAKQVVYISCHPSTMVRDLKVLVEA 412 Query: 338 THTIERLALFDQFPYTRHMECGVLL 362 + + + D FP+T H+E LL Sbjct: 413 GYKMIAAGVMDMFPHTAHVEAIALL 437 >gi|299144530|ref|ZP_07037609.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298517618|gb|EFI41358.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 520 Score = 89.7 bits (221), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 54/160 (33%), Positives = 84/160 (52%), Gaps = 13/160 (8%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + +LYCG G SL AR+ +V+ VEI + ++E AR N N V+NV+ + S+E + Sbjct: 279 IFDLYCGIGTISLFAARNAKKVIGVEIVENAIEDARKNAEFNSVDNVRFICGKSEEILEK 338 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330 + E + K I +DPPR+GLD+ + +++ P I YISCN + R Sbjct: 339 LLDEEKIIPNK-----------IILDPPRAGLDEKLIKKLLEIMPEKISYISCNSSTQAR 387 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRKPSGWH 370 DL +L + IE++ D F + H+E V L + S H Sbjct: 388 DLKLLKEKYKIEKIQPVDMFCNSVHVETVVYLSKLKSDEH 427 >gi|153839832|ref|ZP_01992499.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio parahaemolyticus AQ3810] gi|149746649|gb|EDM57637.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio parahaemolyticus AQ3810] Length = 439 Score = 89.7 bits (221), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 99/380 (26%), Positives = 162/380 (42%), Gaps = 64/380 (16%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQI---FRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66 Y+QQL K LRQ+M F ++ + E + YR RA ++ D + F + Sbjct: 98 YDQQLTHKQQTLRQLMRKFAGSDIDLDAPVLGESLGYRRRARVSLFVD-KKTRQLHFGFR 156 Query: 67 TKERMRIDYFMPGSLL---INALMIEMMATI----RLEPLLRAKLFQIDYLTSQSDQAIV 119 K+ +I +L +N L+ E+ + + + E L +L D + + Sbjct: 157 KKQSKQIAQVTDCPVLAPELNVLLPEIYSVLTAFKKPEQLGHVELVLGD------NGPCI 210 Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179 TL + L D + L A ++Q L ++ L VAG Sbjct: 211 TLRHLSNLADEEVSALVEL-----ATRHQASLYLMPETDQLNL----------VAGEVPF 255 Query: 180 YRQI-------ENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARH 230 Y++ N+F Q N +N M+E + Q D +L+L+CG GNFSL +A+ Sbjct: 256 YQEAGVKIPFAPNNFIQVNQAVNQKMVEQAIEWLDP-QSDERVLDLFCGLGNFSLPIAKR 314 Query: 231 FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY 290 V+ VE VE A N + N +NN +F A N +D D ++ Sbjct: 315 AKHVVGVEGVAEMVEKASNNASLNQINNA--------QFYHA-------NLEQDFDGQAW 359 Query: 291 ---RFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDL-SILSTTHTIERL 344 +F + +DP R+G + V A ++Y+SCNP +L RD S+L + + +L Sbjct: 360 AAEKFDKVLLDPARAGA-SGIIDQVSALGAQRVVYVSCNPATLARDSQSLLEQGYQLTKL 418 Query: 345 ALFDQFPYTRHMECGVLLVR 364 + D FP+T H+E L + Sbjct: 419 GMLDMFPHTSHLESMALFEK 438 >gi|183600076|ref|ZP_02961569.1| hypothetical protein PROSTU_03609 [Providencia stuartii ATCC 25827] gi|188022362|gb|EDU60402.1| hypothetical protein PROSTU_03609 [Providencia stuartii ATCC 25827] Length = 443 Score = 89.4 bits (220), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 64/207 (30%), Positives = 96/207 (46%), Gaps = 33/207 (15%) Query: 173 VAGRTLIYRQIENSFTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLA 228 VAG L + + +F Q N+ IN M LEW+ +L+L+CG GNF+L +A Sbjct: 259 VAGEMLQFSPL--NFIQVNSDINQKMVAQALEWLDLHP---HDRVLDLFCGMGNFTLPIA 313 Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288 R V+ VE + V+ AR N N + N +N + IH Sbjct: 314 RRVKAVVGVEGVENLVKQARNNAQRNSIGNATF-----------------YNENLEAQIH 356 Query: 289 SY-----RFKTIFVDPPRSGLDDATVGMVQAYPH-ILYISCNPDSLCRDLSI-LSTTHTI 341 + F + +DP R+G +V+ P I+Y+SCNP +L RD I L + + Sbjct: 357 TQPWAAEGFNKVLLDPARAGAAGVMEHLVKLMPEKIVYVSCNPTTLARDSKILLQAGYQL 416 Query: 342 ERLALFDQFPYTRHMECGVLLVRKPSG 368 +L + D FP+T H+E VL + P G Sbjct: 417 VQLRMLDMFPHTSHLESMVLFINSPEG 443 >gi|295108206|emb|CBL22159.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Ruminococcus obeum A2-162] Length = 441 Score = 89.4 bits (220), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 102/390 (26%), Positives = 168/390 (43%), Gaps = 47/390 (12%) Query: 2 SGTLLIDQ-YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDD-LY 59 G L+D YE+QL +K + + +++ + I +P HYR + H D + Sbjct: 71 GGCQLLDMPYEKQLKKKQNHVSKLVQPYCRTEKIIGMEDPFHYRNKVHAVFGHRKDGTVI 130 Query: 60 HIMFDQQTKERMRIDYFMPGSLLINALMIE---MMATIRLEP--------LLRAKLFQID 108 + Q T + +D + +A++ + ++ + +++ L R L + Sbjct: 131 SGTYQQGTHFIVPVDECLIEDKRADAIICDIRGLLKSFKIKTYNEDTGYGLFRHVLIRTG 190 Query: 109 YLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD----- 163 Y S Q +V L+ + + LR LH I L KT + L Sbjct: 191 Y---HSGQVMVVLVLGSPILPSKNNFVKALR-KLHPEITTIILNVNDQKTSMVLGEKETV 246 Query: 164 ---RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYC 218 + Y+++ L G T +R SF Q N + L G+ G +++ YC Sbjct: 247 LYGKGYIEDEL--CGHT--FRISSKSFYQVNP-VQTEKLYAKAIELAGLTGKERVIDAYC 301 Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278 G G L+ + V++VE+ +V+ A N N + NV+ R + F + M E E Sbjct: 302 GIGTIGLIASDKAKEVISVELNPDAVKDAIVNAKRNGIRNVRFYRNDASVFMRQMADEGE 361 Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCRDLSILS 336 D+ +F+DPPRSG D+ + +V +P I+Y+SC P +L RDL L+ Sbjct: 362 -----SADV-------VFMDPPRSGSDEKFLSSVVTLHPKRIVYVSCEPTTLARDLKYLT 409 Query: 337 TTHTIERLAL-FDQFPYTRHMECGVLLVRK 365 R A+ FD FP T H+E VLL RK Sbjct: 410 RHGYRVRTAVPFDMFPATEHVETAVLLQRK 439 >gi|217077926|ref|YP_002335644.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Thermosipho africanus TCF52B] gi|217037781|gb|ACJ76303.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Thermosipho africanus TCF52B] Length = 440 Score = 89.4 bits (220), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 59/184 (32%), Positives = 94/184 (51%), Gaps = 20/184 (10%) Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 +F Q N + M+E+ L + G+ +L+L+ G G FSL LA V+AVE + S Sbjct: 270 AFFQNNFQVAEKMVEF-LTKKLDLNGNEVVLDLFSGLGTFSLRLAALSKFVIAVESSHVS 328 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 V+A R N N + N+K + + ++ + +F I +DPPR+G Sbjct: 329 VKAGRANANINGLKNIKFIEADALDYLNQVNE---------------KFDVIVLDPPRTG 373 Query: 304 LD-DATVGMVQAYPH-ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVL 361 + +A +++ P I Y+SCNP + RDL +L + IE + +FD FP T H+E + Sbjct: 374 IGTEAVKKILELSPQKIGYVSCNPTTFARDLKLLLEKYEIEDIRIFDMFPQTYHIESIAI 433 Query: 362 LVRK 365 L RK Sbjct: 434 LNRK 437 >gi|323966763|gb|EGB62194.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli M863] gi|327251523|gb|EGE63209.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli STEC_7v] Length = 433 Score = 89.4 bits (220), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 61/187 (32%), Positives = 91/187 (48%), Gaps = 27/187 (14%) Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 F Q NAG+N M LEW+ + +L+L+CG GNF+L LA V+ VE Sbjct: 263 FIQVNAGVNQKMVARALEWLDVQP---EDRVLDLFCGMGNFTLPLATQAASVVGVEGVPA 319 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDP 299 VE + N N ++NV + +E D+ + F + +DP Sbjct: 320 LVEKGQQNARLNGLHNVTFYHENLEE---------------DVTKQPWAKNGFDKVLLDP 364 Query: 300 PRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHME 357 R+G +++ P I+Y+SCNP +L RD ++L +TI RLA+ D FP+T H+E Sbjct: 365 ARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLE 424 Query: 358 CGVLLVR 364 VL R Sbjct: 425 SMVLFSR 431 >gi|187731305|ref|YP_001881474.1| 23S rRNA 5-methyluridine methyltransferase [Shigella boydii CDC 3083-94] gi|187428297|gb|ACD07571.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Shigella boydii CDC 3083-94] Length = 433 Score = 89.4 bits (220), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 62/189 (32%), Positives = 92/189 (48%), Gaps = 31/189 (16%) Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIA 240 F Q NAG+N M LEW+ +Q + +L+L+CG GNF+L LA V+ VE Sbjct: 263 FIQVNAGVNQKMVASALEWL-----DVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGV 317 Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFV 297 VE + N N + NV + +E D+ + F + + Sbjct: 318 PALVEKGQQNARLNGLQNVTFYHENLEE---------------DVTKQPWAKNGFDKVLL 362 Query: 298 DPPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRH 355 DP R+G +++ P I+Y+SCNP +L RD ++L +TI RLA+ D FP+T H Sbjct: 363 DPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGH 422 Query: 356 MECGVLLVR 364 +E VL R Sbjct: 423 LESMVLFSR 431 >gi|16130692|ref|NP_417265.1| 23S rRNA m(5)U1939 methyltransferase, SAM-dependent [Escherichia coli str. K-12 substr. MG1655] gi|89109571|ref|AP_003351.1| 23S rRNA (uracil-5)-methyltransferase [Escherichia coli str. K-12 substr. W3110] gi|157162239|ref|YP_001459557.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia coli HS] gi|170082356|ref|YP_001731676.1| 23S rRNA (uracil-5)-methyltransferase [Escherichia coli str. K-12 substr. DH10B] gi|238901923|ref|YP_002927719.1| 23S rRNA (uracil-5)-methyltransferase [Escherichia coli BW2952] gi|254037835|ref|ZP_04871893.1| 23S rRNA (uracil-5)-methyltransferase [Escherichia sp. 1_1_43] gi|256024712|ref|ZP_05438577.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia sp. 4_1_40B] gi|300906690|ref|ZP_07124378.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS 84-1] gi|300950513|ref|ZP_07164423.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS 116-1] gi|300958099|ref|ZP_07170259.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS 175-1] gi|301026290|ref|ZP_07189745.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS 196-1] gi|301304553|ref|ZP_07210663.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS 124-1] gi|301645251|ref|ZP_07245203.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS 146-1] gi|307139471|ref|ZP_07498827.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia coli H736] gi|312972999|ref|ZP_07787172.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli 1827-70] gi|331643470|ref|ZP_08344601.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli H736] gi|1723811|sp|P55135|RUMA_ECOLI RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|62738954|pdb|2BH2|A Chain A, Crystal Structure Of E. Coli 5-Methyluridine Methyltransferase Ruma In Complex With Ribosomal Rna Substrate And S-Adenosylhomocysteine. gi|62738955|pdb|2BH2|B Chain B, Crystal Structure Of E. Coli 5-Methyluridine Methyltransferase Ruma In Complex With Ribosomal Rna Substrate And S-Adenosylhomocysteine. gi|882679|gb|AAA69295.1| alternate gene name ygcA; ORF_f433 [Escherichia coli str. K-12 substr. MG1655] gi|1789148|gb|AAC75827.1| 23S rRNA m(5)U1939 methyltransferase, SAM-dependent [Escherichia coli str. K-12 substr. MG1655] gi|85675604|dbj|BAE76859.1| 23S rRNA (uracil-5)-methyltransferase [Escherichia coli str. K12 substr. W3110] gi|157067919|gb|ABV07174.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli HS] gi|169890191|gb|ACB03898.1| 23S rRNA (uracil-5)-methyltransferase [Escherichia coli str. K-12 substr. DH10B] gi|226839459|gb|EEH71480.1| 23S rRNA (uracil-5)-methyltransferase [Escherichia sp. 1_1_43] gi|238859753|gb|ACR61751.1| 23S rRNA (uracil-5)-methyltransferase [Escherichia coli BW2952] gi|260448164|gb|ACX38586.1| RNA methyltransferase, TrmA family [Escherichia coli DH1] gi|299879749|gb|EFI87960.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS 196-1] gi|300315219|gb|EFJ65003.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS 175-1] gi|300401525|gb|EFJ85063.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS 84-1] gi|300450173|gb|EFK13793.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS 116-1] gi|300840157|gb|EFK67917.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS 124-1] gi|301076454|gb|EFK91260.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS 146-1] gi|309703143|emb|CBJ02477.1| 23s rRNA (uracil-5-)-methyltransferase [Escherichia coli ETEC H10407] gi|310332941|gb|EFQ00155.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli 1827-70] gi|315137392|dbj|BAJ44551.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia coli DH1] gi|315256644|gb|EFU36612.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS 85-1] gi|315615171|gb|EFU95808.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli 3431] gi|323935853|gb|EGB32156.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli E1520] gi|323941534|gb|EGB37716.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli E482] gi|331036941|gb|EGI09165.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli H736] gi|332344676|gb|AEE58010.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli UMNK88] Length = 433 Score = 89.4 bits (220), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 61/187 (32%), Positives = 90/187 (48%), Gaps = 27/187 (14%) Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 F Q NAG+N M LEW+ + +L+L+CG GNF+L LA V+ VE Sbjct: 263 FIQVNAGVNQKMVARALEWLDVQP---EDRVLDLFCGMGNFTLPLATQAASVVGVEGVPA 319 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDP 299 VE + N N + NV + +E D+ + F + +DP Sbjct: 320 LVEKGQQNARLNGLQNVTFYHENLEE---------------DVTKQPWAKNGFDKVLLDP 364 Query: 300 PRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHME 357 R+G +++ P I+Y+SCNP +L RD ++L +TI RLA+ D FP+T H+E Sbjct: 365 ARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLE 424 Query: 358 CGVLLVR 364 VL R Sbjct: 425 SMVLFSR 431 >gi|170681551|ref|YP_001744947.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia coli SMS-3-5] gi|170519269|gb|ACB17447.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli SMS-3-5] Length = 433 Score = 89.4 bits (220), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 61/187 (32%), Positives = 91/187 (48%), Gaps = 27/187 (14%) Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 F Q NAG+N M LEW+ + +L+L+CG GNF+L LA V+ VE Sbjct: 263 FIQVNAGVNQKMVARALEWLDVQP---EDRVLDLFCGMGNFTLPLATQAASVVGVEGVPA 319 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDP 299 VE + N N ++NV + +E D+ + F + +DP Sbjct: 320 LVEKGQQNARLNGLHNVTFYHENLEE---------------DVTKQPWAKNGFDKVLLDP 364 Query: 300 PRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHME 357 R+G +++ P I+Y+SCNP +L RD ++L +TI RLA+ D FP+T H+E Sbjct: 365 ARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLE 424 Query: 358 CGVLLVR 364 VL R Sbjct: 425 SMVLFSR 431 >gi|110806549|ref|YP_690069.1| 23S rRNA 5-methyluridine methyltransferase [Shigella flexneri 5 str. 8401] gi|122957267|sp|Q0T1Q1|RUMA_SHIF8 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|110616097|gb|ABF04764.1| putative enzyme [Shigella flexneri 5 str. 8401] Length = 433 Score = 89.4 bits (220), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 61/187 (32%), Positives = 90/187 (48%), Gaps = 27/187 (14%) Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 F Q NAG+N M LEW+ + +L+L+CG GNF+L LA V+ VE Sbjct: 263 FIQVNAGVNQKMVARALEWLDVQP---EDRVLDLFCGMGNFTLPLATQAASVVGVEGVPA 319 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDP 299 VE + N N + NV + +E D+ + F + +DP Sbjct: 320 LVEKGQQNARLNGLQNVTFYHENLEE---------------DVTKQPWAKNGFDKVLLDP 364 Query: 300 PRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHME 357 R+G +++ P I+Y+SCNP +L RD ++L +TI RLA+ D FP+T H+E Sbjct: 365 ARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLE 424 Query: 358 CGVLLVR 364 VL R Sbjct: 425 SMVLFSR 431 >gi|320173231|gb|EFW48441.1| 23S rRNA 5-methyluridine methyltransferase [Shigella dysenteriae CDC 74-1112] Length = 433 Score = 89.4 bits (220), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 61/187 (32%), Positives = 90/187 (48%), Gaps = 27/187 (14%) Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 F Q NAG+N M LEW+ + +L+L+CG GNF+L LA V+ VE Sbjct: 263 FIQVNAGVNQKMVASALEWLDVQP---EDRVLDLFCGMGNFTLPLATQAASVVGVEGVPA 319 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDP 299 VE + N N + NV + +E D+ + F + +DP Sbjct: 320 LVEKGQQNARLNGLQNVTFYHENLEE---------------DVTKQPWAKNGFDKVLLDP 364 Query: 300 PRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHME 357 R+G +++ P I+Y+SCNP +L RD ++L +TI RLA+ D FP+T H+E Sbjct: 365 ARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLE 424 Query: 358 CGVLLVR 364 VL R Sbjct: 425 SMVLFSR 431 >gi|301027558|ref|ZP_07190891.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS 69-1] gi|300394901|gb|EFJ78439.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS 69-1] Length = 433 Score = 89.4 bits (220), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 62/189 (32%), Positives = 93/189 (49%), Gaps = 31/189 (16%) Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIA 240 F Q NAG+N M LEW+ +Q + +L+L+CG GNF+L LA V+ VE Sbjct: 263 FIQVNAGVNQKMVARALEWL-----DVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGV 317 Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFV 297 VE + N N ++NV + +E D+ + F + + Sbjct: 318 PALVEKGQQNARLNGLHNVTFYHENLEE---------------DVTKQPWAKNGFDKVLL 362 Query: 298 DPPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRH 355 DP R+G +++ P I+Y+SCNP +L RD ++L +TI RLA+ D FP+T H Sbjct: 363 DPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGH 422 Query: 356 MECGVLLVR 364 +E VL R Sbjct: 423 LESMVLFSR 431 >gi|82778167|ref|YP_404516.1| 23S rRNA 5-methyluridine methyltransferase [Shigella dysenteriae Sd197] gi|309786100|ref|ZP_07680729.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Shigella dysenteriae 1617] gi|91207812|sp|Q32CD0|RUMA_SHIDS RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|81242315|gb|ABB63025.1| putative enzyme [Shigella dysenteriae Sd197] gi|308926211|gb|EFP71689.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Shigella dysenteriae 1617] Length = 433 Score = 89.4 bits (220), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 61/187 (32%), Positives = 90/187 (48%), Gaps = 27/187 (14%) Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 F Q NAG+N M LEW+ + +L+L+CG GNF+L LA V+ VE Sbjct: 263 FIQVNAGVNQKMVARALEWLDVQP---EDRVLDLFCGMGNFTLPLATQAASVVGVEGVPA 319 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDP 299 VE + N N + NV + +E D+ + F + +DP Sbjct: 320 LVEKGQQNARLNGLQNVTFYHENLEE---------------DVTKQPWAKNGFDKVLLDP 364 Query: 300 PRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHME 357 R+G +++ P I+Y+SCNP +L RD ++L +TI RLA+ D FP+T H+E Sbjct: 365 ARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLE 424 Query: 358 CGVLLVR 364 VL R Sbjct: 425 SMVLFSR 431 >gi|74313357|ref|YP_311776.1| 23S rRNA 5-methyluridine methyltransferase [Shigella sonnei Ss046] gi|91207813|sp|Q3YY71|RUMA_SHISS RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|73856834|gb|AAZ89541.1| putative enzyme [Shigella sonnei Ss046] gi|323167875|gb|EFZ53566.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Shigella sonnei 53G] Length = 433 Score = 89.4 bits (220), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 61/187 (32%), Positives = 90/187 (48%), Gaps = 27/187 (14%) Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 F Q NAG+N M LEW+ + +L+L+CG GNF+L LA V+ VE Sbjct: 263 FIQVNAGVNQKMVARALEWLDVQP---EDRVLDLFCGMGNFTLPLATQAASVVGVEGVPA 319 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDP 299 VE + N N + NV + +E D+ + F + +DP Sbjct: 320 LVEKGQQNARLNGLQNVTFYHENLEE---------------DVTKQPWAKNGFDKVLLDP 364 Query: 300 PRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHME 357 R+G +++ P I+Y+SCNP +L RD ++L +TI RLA+ D FP+T H+E Sbjct: 365 ARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLE 424 Query: 358 CGVLLVR 364 VL R Sbjct: 425 SMVLFSR 431 >gi|24114069|ref|NP_708579.1| 23S rRNA 5-methyluridine methyltransferase [Shigella flexneri 2a str. 301] gi|30064130|ref|NP_838301.1| 23S rRNA 5-methyluridine methyltransferase [Shigella flexneri 2a str. 2457T] gi|50401544|sp|Q83QD5|RUMA_SHIFL RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|24053196|gb|AAN44286.1| putative enzyme [Shigella flexneri 2a str. 301] gi|30042386|gb|AAP18111.1| putative enzyme [Shigella flexneri 2a str. 2457T] gi|281602145|gb|ADA75129.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Shigella flexneri 2002017] gi|313647845|gb|EFS12291.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Shigella flexneri 2a str. 2457T] gi|332753501|gb|EGJ83881.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Shigella flexneri 4343-70] gi|332753637|gb|EGJ84016.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Shigella flexneri K-671] gi|332754531|gb|EGJ84897.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Shigella flexneri 2747-71] gi|332765736|gb|EGJ95949.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Shigella flexneri 2930-71] gi|332999536|gb|EGK19121.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Shigella flexneri VA-6] gi|333000330|gb|EGK19913.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Shigella flexneri K-218] gi|333001142|gb|EGK20712.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Shigella flexneri K-272] gi|333015340|gb|EGK34680.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Shigella flexneri K-304] gi|333015781|gb|EGK35118.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Shigella flexneri K-227] Length = 433 Score = 89.4 bits (220), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 61/187 (32%), Positives = 90/187 (48%), Gaps = 27/187 (14%) Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 F Q NAG+N M LEW+ + +L+L+CG GNF+L LA V+ VE Sbjct: 263 FIQVNAGVNQKMVARALEWLDVQP---EDRVLDLFCGMGNFTLPLATQAASVVGVEGVPA 319 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDP 299 VE + N N + NV + +E D+ + F + +DP Sbjct: 320 LVEKGQQNARLNGLQNVTFYHENLEE---------------DVTKQPWAKNGFDKVLLDP 364 Query: 300 PRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHME 357 R+G +++ P I+Y+SCNP +L RD ++L +TI RLA+ D FP+T H+E Sbjct: 365 ARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLE 424 Query: 358 CGVLLVR 364 VL R Sbjct: 425 SMVLFSR 431 >gi|300923242|ref|ZP_07139296.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS 182-1] gi|301325725|ref|ZP_07219182.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS 78-1] gi|300420481|gb|EFK03792.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS 182-1] gi|300847475|gb|EFK75235.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS 78-1] Length = 433 Score = 89.4 bits (220), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 61/187 (32%), Positives = 90/187 (48%), Gaps = 27/187 (14%) Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 F Q NAG+N M LEW+ + +L+L+CG GNF+L LA V+ VE Sbjct: 263 FIQVNAGVNQKMVARALEWLDVQP---EDRVLDLFCGMGNFTLPLATQAASVVGVEGVPA 319 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDP 299 VE + N N + NV + +E D+ + F + +DP Sbjct: 320 LVEKGQQNARLNGLQNVTFYHENLEE---------------DVTKQPWAKNGFDKVLLDP 364 Query: 300 PRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHME 357 R+G +++ P I+Y+SCNP +L RD ++L +TI RLA+ D FP+T H+E Sbjct: 365 ARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLE 424 Query: 358 CGVLLVR 364 VL R Sbjct: 425 SMVLFSR 431 >gi|294101799|ref|YP_003553657.1| RNA methyltransferase, TrmA family [Aminobacterium colombiense DSM 12261] gi|293616779|gb|ADE56933.1| RNA methyltransferase, TrmA family [Aminobacterium colombiense DSM 12261] Length = 464 Score = 89.4 bits (220), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 56/157 (35%), Positives = 80/157 (50%), Gaps = 20/157 (12%) Query: 210 QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269 QG LELY G G SL LA FD ++ VE +VEA R N+ N +NV Sbjct: 318 QGRALELYSGVGALSLFLASKFDNLVTVEDWPSAVEAMRKNLELNDFHNVS--------- 368 Query: 270 TQAMRREREFNRLKDIDIH-SYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPD 326 R +D+ H F ++ +DPPRSG + + + + ILY++CNP Sbjct: 369 -------PHTGRAEDVIFHLDGPFNSVILDPPRSGCNRQVIQRILEWKPQQILYVACNPA 421 Query: 327 SLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLL 362 +L RD+++L + +E+L FD FP T H+EC LL Sbjct: 422 TLARDIALLYEGGYRLEKLQPFDMFPQTVHVECVALL 458 >gi|218706281|ref|YP_002413800.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia coli UMN026] gi|293406277|ref|ZP_06650203.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Escherichia coli FVEC1412] gi|298382014|ref|ZP_06991611.1| TrmA family RNA methyltransferase [Escherichia coli FVEC1302] gi|300898161|ref|ZP_07116523.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS 198-1] gi|218433378|emb|CAR14280.1| 23S rRNA (uracil-5)-methyltransferase [Escherichia coli UMN026] gi|291426283|gb|EFE99315.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Escherichia coli FVEC1412] gi|298277154|gb|EFI18670.1| TrmA family RNA methyltransferase [Escherichia coli FVEC1302] gi|300358136|gb|EFJ74006.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS 198-1] Length = 433 Score = 89.4 bits (220), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 61/187 (32%), Positives = 91/187 (48%), Gaps = 27/187 (14%) Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 F Q NAG+N M LEW+ + +L+L+CG GNF+L LA V+ VE Sbjct: 263 FIQVNAGVNQKMVARALEWLDVQP---EDRVLDLFCGMGNFTLPLATQAASVVGVEGVPA 319 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDP 299 VE + N N ++NV + +E D+ + F + +DP Sbjct: 320 LVEKGQQNARLNGLHNVTFYHENLEE---------------DVTKQPWAKNGFDKVLLDP 364 Query: 300 PRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHME 357 R+G +++ P I+Y+SCNP +L RD ++L +TI RLA+ D FP+T H+E Sbjct: 365 ARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLE 424 Query: 358 CGVLLVR 364 VL R Sbjct: 425 SMVLFSR 431 >gi|331674278|ref|ZP_08375038.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli TA280] gi|331068372|gb|EGI39767.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli TA280] Length = 433 Score = 89.4 bits (220), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 61/187 (32%), Positives = 90/187 (48%), Gaps = 27/187 (14%) Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 F Q NAG+N M LEW+ + +L+L+CG GNF+L LA V+ VE Sbjct: 263 FIQVNAGVNQKMVARALEWLDVQP---EDRVLDLFCGMGNFTLPLATQAASVVGVEGVPA 319 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDP 299 VE + N N + NV + +E D+ + F + +DP Sbjct: 320 LVEKGQQNARLNGLQNVTFYHENLEE---------------DVTKQPWAKNGFDKVLLDP 364 Query: 300 PRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHME 357 R+G +++ P I+Y+SCNP +L RD ++L +TI RLA+ D FP+T H+E Sbjct: 365 ARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLE 424 Query: 358 CGVLLVR 364 VL R Sbjct: 425 SMVLFSR 431 >gi|324119827|gb|EGC13706.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli E1167] Length = 433 Score = 89.4 bits (220), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 61/187 (32%), Positives = 90/187 (48%), Gaps = 27/187 (14%) Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 F Q NAG+N M LEW+ + +L+L+CG GNF+L LA V+ VE Sbjct: 263 FIQVNAGVNQKMVARALEWLDVQP---EDRVLDLFCGMGNFTLPLATQAASVVGVEGVPA 319 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDP 299 VE + N N + NV + +E D+ + F + +DP Sbjct: 320 LVEKGQQNARLNGLQNVTFYHENLEE---------------DVTKQPWAKNGFDKVLLDP 364 Query: 300 PRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHME 357 R+G +++ P I+Y+SCNP +L RD ++L +TI RLA+ D FP+T H+E Sbjct: 365 ARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLE 424 Query: 358 CGVLLVR 364 VL R Sbjct: 425 SMVLFSR 431 >gi|215488102|ref|YP_002330533.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia coli O127:H6 str. E2348/69] gi|312964949|ref|ZP_07779189.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli 2362-75] gi|215266174|emb|CAS10600.1| 23S rRNA (uracil-5)-methyltransferase [Escherichia coli O127:H6 str. E2348/69] gi|312290505|gb|EFR18385.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli 2362-75] gi|323188799|gb|EFZ74084.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli RN587/1] Length = 433 Score = 89.4 bits (220), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 61/187 (32%), Positives = 90/187 (48%), Gaps = 27/187 (14%) Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 F Q NAG+N M LEW+ + +L+L+CG GNF+L LA V+ VE Sbjct: 263 FIQVNAGVNQKMVARALEWLDVQP---EDRVLDLFCGMGNFTLPLATQAASVVGVEGVPA 319 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDP 299 VE + N N + NV + +E D+ + F + +DP Sbjct: 320 LVEKGQQNARLNGLQNVTFYHENLEE---------------DVTKQPWAKNGFDKVLLDP 364 Query: 300 PRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHME 357 R+G +++ P I+Y+SCNP +L RD ++L +TI RLA+ D FP+T H+E Sbjct: 365 ARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLE 424 Query: 358 CGVLLVR 364 VL R Sbjct: 425 SMVLFSR 431 >gi|315127392|ref|YP_004069395.1| 23S rRNA (uracil-5)-methyltransferase, responsible for modification at position U1939, SAM-dependent [Pseudoalteromonas sp. SM9913] gi|315015906|gb|ADT69244.1| 23S rRNA (uracil-5)-methyltransferase, responsible for modification at position U1939, SAM-dependent [Pseudoalteromonas sp. SM9913] Length = 441 Score = 89.4 bits (220), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 61/193 (31%), Positives = 100/193 (51%), Gaps = 33/193 (17%) Query: 185 NSFTQPNAGINVHML----EWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVE 238 N+F Q NA +N ML W+ +QGD +L+L+CG GNFSLVLA+ V +E Sbjct: 270 NNFIQVNASVNQAMLIQAVSWL-----ALQGDENVLDLFCGIGNFSLVLAKQAKTVTGIE 324 Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298 +V A N H N++ + + T ++++ FN K++DI + +D Sbjct: 325 GVTSAVALATQNA---HTNSITNTQFHCFDLTTSIKKAPWFN--KELDI-------LVLD 372 Query: 299 PPRSGLDDATVGMVQAYP-----HILYISCNPDSLCRDLSILS-TTHTIERLALFDQFPY 352 P R+G + +++ P ILY+SC+P +L RD +I+S + ++ L + FP+ Sbjct: 373 PSRTG----AMAVLEQLPLTQFKAILYVSCDPVTLARDSAIISQAGFELNKIGLMNMFPH 428 Query: 353 TRHMECGVLLVRK 365 T H+E L R+ Sbjct: 429 TGHIETMALFQRR 441 >gi|82545084|ref|YP_409031.1| 23S rRNA 5-methyluridine methyltransferase [Shigella boydii Sb227] gi|91207811|sp|Q31XK5|RUMA_SHIBS RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|81246495|gb|ABB67203.1| putative enzyme [Shigella boydii Sb227] gi|332091873|gb|EGI96951.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Shigella boydii 3594-74] Length = 433 Score = 89.4 bits (220), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 61/187 (32%), Positives = 90/187 (48%), Gaps = 27/187 (14%) Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 F Q NAG+N M LEW+ + +L+L+CG GNF+L LA V+ VE Sbjct: 263 FIQVNAGVNQKMVASALEWLDVQP---EDRVLDLFCGMGNFTLPLATQAASVVGVEGVPA 319 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDP 299 VE + N N + NV + +E D+ + F + +DP Sbjct: 320 LVEKGQQNARLNGLQNVTFYHENLEE---------------DVTKQPWAKNGFDKVLLDP 364 Query: 300 PRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHME 357 R+G +++ P I+Y+SCNP +L RD ++L +TI RLA+ D FP+T H+E Sbjct: 365 ARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLE 424 Query: 358 CGVLLVR 364 VL R Sbjct: 425 SMVLFSR 431 >gi|188495297|ref|ZP_03002567.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli 53638] gi|188490496|gb|EDU65599.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli 53638] Length = 433 Score = 89.4 bits (220), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 61/187 (32%), Positives = 90/187 (48%), Gaps = 27/187 (14%) Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 F Q NAG+N M LEW+ + +L+L+CG GNF+L LA V+ VE Sbjct: 263 FIQVNAGVNQKMVARALEWLDVQP---EDRVLDLFCGMGNFTLPLATQAASVVGVEGVPA 319 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDP 299 VE + N N + NV + +E D+ + F + +DP Sbjct: 320 LVEKGQQNARLNGLQNVTFYHENLEE---------------DVTKQPWAKNGFDKVLLDP 364 Query: 300 PRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHME 357 R+G +++ P I+Y+SCNP +L RD ++L +TI RLA+ D FP+T H+E Sbjct: 365 ARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLE 424 Query: 358 CGVLLVR 364 VL R Sbjct: 425 SMVLFSR 431 >gi|293416032|ref|ZP_06658672.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli B185] gi|291432221|gb|EFF05203.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli B185] Length = 433 Score = 89.4 bits (220), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 61/187 (32%), Positives = 90/187 (48%), Gaps = 27/187 (14%) Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 F Q NAG+N M LEW+ + +L+L+CG GNF+L LA V+ VE Sbjct: 263 FIQVNAGVNQKMVARALEWLDVQP---EDRVLDLFCGMGNFTLPLATQAASVVGVEGVPA 319 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDP 299 VE + N N + NV + +E D+ + F + +DP Sbjct: 320 LVEKGQQNARLNGLQNVTFYHENLEE---------------DVTKQPWAKNGFDKVLLDP 364 Query: 300 PRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHME 357 R+G +++ P I+Y+SCNP +L RD ++L +TI RLA+ D FP+T H+E Sbjct: 365 ARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLE 424 Query: 358 CGVLLVR 364 VL R Sbjct: 425 SMVLFSR 431 >gi|91212152|ref|YP_542138.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia coli UTI89] gi|117625013|ref|YP_854001.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia coli APEC O1] gi|218559773|ref|YP_002392686.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia coli S88] gi|237706587|ref|ZP_04537068.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia sp. 3_2_53FAA] gi|122422654|sp|Q1R7Q7|RUMA_ECOUT RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|143580911|sp|A1AEX2|RUMA_ECOK1 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|91073726|gb|ABE08607.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli UTI89] gi|115514137|gb|ABJ02212.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli APEC O1] gi|218366542|emb|CAR04295.1| 23S rRNA (uracil-5)-methyltransferase [Escherichia coli S88] gi|226899627|gb|EEH85886.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia sp. 3_2_53FAA] gi|294492471|gb|ADE91227.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli IHE3034] gi|307625646|gb|ADN69950.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia coli UM146] gi|315289302|gb|EFU48697.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS 110-3] gi|323950998|gb|EGB46874.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli H252] gi|323957203|gb|EGB52927.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli H263] Length = 433 Score = 89.4 bits (220), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 61/187 (32%), Positives = 90/187 (48%), Gaps = 27/187 (14%) Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 F Q NAG+N M LEW+ + +L+L+CG GNF+L LA V+ VE Sbjct: 263 FIQVNAGVNQKMVARALEWLDVEPEDC---VLDLFCGMGNFTLPLATQAASVVGVEGVPA 319 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDP 299 VE + N N + NV + +E D+ + F + +DP Sbjct: 320 LVEKGQQNARLNGLQNVTFYHENLEE---------------DVTKQPWAKNGFDKVLLDP 364 Query: 300 PRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHME 357 R+G +++ P I+Y+SCNP +L RD ++L +TI RLA+ D FP+T H+E Sbjct: 365 ARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLE 424 Query: 358 CGVLLVR 364 VL R Sbjct: 425 SMVLFSR 431 >gi|300936300|ref|ZP_07151232.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS 21-1] gi|300458552|gb|EFK22045.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS 21-1] Length = 433 Score = 89.4 bits (220), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 61/187 (32%), Positives = 91/187 (48%), Gaps = 27/187 (14%) Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 F Q NAG+N M LEW+ + +L+L+CG GNF+L LA V+ VE Sbjct: 263 FIQVNAGVNQKMVARALEWLDVQP---EDRVLDLFCGMGNFTLPLATQAASVVGVEGVPA 319 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDP 299 VE + N N ++NV + +E D+ + F + +DP Sbjct: 320 LVEKGQQNARLNGLHNVTFYHENLEE---------------DVTKQPWAKNGFDKVLLDP 364 Query: 300 PRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHME 357 R+G +++ P I+Y+SCNP +L RD ++L +TI RLA+ D FP+T H+E Sbjct: 365 ARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLE 424 Query: 358 CGVLLVR 364 VL R Sbjct: 425 SMVLFSR 431 >gi|297528764|ref|YP_003670039.1| RNA methyltransferase, TrmA family [Geobacillus sp. C56-T3] gi|297252016|gb|ADI25462.1| RNA methyltransferase, TrmA family [Geobacillus sp. C56-T3] Length = 462 Score = 89.4 bits (220), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 98/387 (25%), Positives = 167/387 (43%), Gaps = 55/387 (14%) Query: 10 YEQQLAEKVDRLRQMM----LAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ 65 YE QL K ++++ ++ V I P HYR + EF +G H + Sbjct: 97 YEGQLRHKTEQVKALLAQRGFDPDVVRETIGMERPWHYRNKMEFTFSPEGLLGLH----E 152 Query: 66 QTKERMRIDY---FMPGSLLINALMIEMMATIR-----------LEPLLRAKLFQIDYLT 111 Q R I + G ++ A M E+ R E LLR + + + T Sbjct: 153 QGNFRQVISLETCLIAGEKIVKAAM-EVARWARDHQLPGYHKDTHEGLLRHVMVRESFAT 211 Query: 112 SQSDQAI-VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDER 170 + A+ T L +A + R+ AL K + L RA DR ++ Sbjct: 212 GEVMVALFATEAPEGELKEAAADLTERITKALPEVKSLLWLENRA-----WADRTQAEQT 266 Query: 171 LTVAGRTLIYRQIE--------NSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNG 221 +AGR IY ++ ++F Q N ++E L ++++L+CG G Sbjct: 267 HVLAGRDFIYDELCGFRYRLWFDTFFQTNPVQAAKLVELALEMGEPQPHENMIDLFCGVG 326 Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281 FSL A+ + +EI + S+E+A+ N N ++N + R+ R Sbjct: 327 TFSLPFAKRVKALAGIEIVETSIESAKRNAKDNGIDNTYFL-------------ARDARR 373 Query: 282 LKDIDIHSY-RFKTIFVDPPRSGLDDATVGMV-QAYPH-ILYISCNPDSLCRDLS-ILST 337 D + + R + + +DPPRSG + + +A P ++Y+SCNP++ D++ ++ Sbjct: 374 GIDEVLEQFGRPELLLLDPPRSGAGGKVMRKIGRARPERVVYVSCNPETFASDITELVPF 433 Query: 338 THTIERLALFDQFPYTRHMECGVLLVR 364 +T+E + D FP+T H+EC LLVR Sbjct: 434 GYTLETVQPVDMFPHTAHVECCALLVR 460 >gi|331664345|ref|ZP_08365251.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli TA143] gi|284922722|emb|CBG35810.1| 23s rRNA (uracil-5-)-methyltransferase [Escherichia coli 042] gi|331058276|gb|EGI30257.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli TA143] Length = 433 Score = 89.4 bits (220), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 61/187 (32%), Positives = 91/187 (48%), Gaps = 27/187 (14%) Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 F Q NAG+N M LEW+ + +L+L+CG GNF+L LA V+ VE Sbjct: 263 FIQVNAGVNQKMVARALEWLDVQP---EDRVLDLFCGMGNFTLPLATQAASVVGVEGVPA 319 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDP 299 VE + N N ++NV + +E D+ + F + +DP Sbjct: 320 LVEKGQQNARLNDLHNVTFYHENLEE---------------DVTKQPWAKNGFDKVLLDP 364 Query: 300 PRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHME 357 R+G +++ P I+Y+SCNP +L RD ++L +TI RLA+ D FP+T H+E Sbjct: 365 ARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLE 424 Query: 358 CGVLLVR 364 VL R Sbjct: 425 SMVLFSR 431 >gi|157157194|ref|YP_001464107.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia coli E24377A] gi|170018969|ref|YP_001723923.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia coli ATCC 8739] gi|193071100|ref|ZP_03052025.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli E110019] gi|256019428|ref|ZP_05433293.1| 23S rRNA 5-methyluridine methyltransferase [Shigella sp. D9] gi|293449111|ref|ZP_06663532.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli B088] gi|300820571|ref|ZP_07100722.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS 119-7] gi|300920362|ref|ZP_07136799.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS 115-1] gi|307312786|ref|ZP_07592416.1| RNA methyltransferase, TrmA family [Escherichia coli W] gi|309795251|ref|ZP_07689670.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS 145-7] gi|331669519|ref|ZP_08370365.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli TA271] gi|331678762|ref|ZP_08379436.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli H591] gi|331684405|ref|ZP_08384997.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli H299] gi|332280548|ref|ZP_08392961.1| 23S rRNA 5-methyluridine methyltransferase [Shigella sp. D9] gi|157079224|gb|ABV18932.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli E24377A] gi|169753897|gb|ACA76596.1| RNA methyltransferase, TrmA family [Escherichia coli ATCC 8739] gi|192955561|gb|EDV86039.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli E110019] gi|291322201|gb|EFE61630.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli B088] gi|300412625|gb|EFJ95935.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS 115-1] gi|300526835|gb|EFK47904.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS 119-7] gi|306907221|gb|EFN37727.1| RNA methyltransferase, TrmA family [Escherichia coli W] gi|308121222|gb|EFO58484.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS 145-7] gi|315062067|gb|ADT76394.1| 23S rRNA (uracil-5)-methyltransferase [Escherichia coli W] gi|320202429|gb|EFW76999.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia coli EC4100B] gi|323172912|gb|EFZ58543.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli LT-68] gi|323183324|gb|EFZ68721.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli 1357] gi|323377350|gb|ADX49618.1| RNA methyltransferase, TrmA family [Escherichia coli KO11] gi|331063187|gb|EGI35100.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli TA271] gi|331073592|gb|EGI44913.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli H591] gi|331078020|gb|EGI49226.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli H299] gi|332102900|gb|EGJ06246.1| 23S rRNA 5-methyluridine methyltransferase [Shigella sp. D9] Length = 433 Score = 89.4 bits (220), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 61/187 (32%), Positives = 90/187 (48%), Gaps = 27/187 (14%) Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 F Q NAG+N M LEW+ + +L+L+CG GNF+L LA V+ VE Sbjct: 263 FIQVNAGVNQKMVARALEWLDVQP---EDRVLDLFCGMGNFTLPLATQAASVVGVEGVPA 319 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDP 299 VE + N N + NV + +E D+ + F + +DP Sbjct: 320 LVEKGQQNARLNGLQNVTFYHENLEE---------------DVTKQPWAKNGFDKVLLDP 364 Query: 300 PRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHME 357 R+G +++ P I+Y+SCNP +L RD ++L +TI RLA+ D FP+T H+E Sbjct: 365 ARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLE 424 Query: 358 CGVLLVR 364 VL R Sbjct: 425 SMVLFSR 431 >gi|293412132|ref|ZP_06654855.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli B354] gi|291468903|gb|EFF11394.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli B354] Length = 223 Score = 89.4 bits (220), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 61/187 (32%), Positives = 91/187 (48%), Gaps = 27/187 (14%) Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 F Q NAG+N M LEW+ + +L+L+CG GNF+L LA V+ VE Sbjct: 53 FIQVNAGVNQKMVARALEWLDVQP---EDRVLDLFCGMGNFTLPLATQAASVVGVEGVPA 109 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDP 299 VE + N N ++NV + +E D+ + F + +DP Sbjct: 110 LVEKGQQNARLNGLHNVTFYHENLEE---------------DVTKQPWAKNGFDKVLLDP 154 Query: 300 PRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHME 357 R+G +++ P I+Y+SCNP +L RD ++L +TI RLA+ D FP+T H+E Sbjct: 155 ARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLE 214 Query: 358 CGVLLVR 364 VL R Sbjct: 215 SMVLFSR 221 >gi|222034476|emb|CAP77218.1| 23S rRNA [Escherichia coli LF82] gi|312947312|gb|ADR28139.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia coli O83:H1 str. NRG 857C] Length = 433 Score = 89.4 bits (220), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 61/187 (32%), Positives = 90/187 (48%), Gaps = 27/187 (14%) Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 F Q NAG+N M LEW+ + +L+L+CG GNF+L LA V+ VE Sbjct: 263 FIQVNAGVNQKMVARALEWLDVEP---EDRVLDLFCGMGNFTLPLATQAASVVGVEGVPA 319 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDP 299 VE + N N + NV + +E D+ + F + +DP Sbjct: 320 LVEKGQQNARLNGLQNVTFYHENLEE---------------DVTKQPWAKNGFDKVLLDP 364 Query: 300 PRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHME 357 R+G +++ P I+Y+SCNP +L RD ++L +TI RLA+ D FP+T H+E Sbjct: 365 ARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLE 424 Query: 358 CGVLLVR 364 VL R Sbjct: 425 SMVLFSR 431 >gi|191168556|ref|ZP_03030341.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli B7A] gi|190901403|gb|EDV61167.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli B7A] Length = 433 Score = 89.4 bits (220), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 62/189 (32%), Positives = 92/189 (48%), Gaps = 31/189 (16%) Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIA 240 F Q NAG+N M LEW+ +Q + +L+L+CG GNF+L LA V+ VE Sbjct: 263 FIQVNAGVNQKMVARALEWL-----DVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGV 317 Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFV 297 VE + N N + NV + +E D+ + F + + Sbjct: 318 PALVEKGQQNARLNGLQNVTFYHENLEE---------------DVTKQPWAKNGFDKVLL 362 Query: 298 DPPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRH 355 DP R+G +++ P I+Y+SCNP +L RD ++L +TI RLA+ D FP+T H Sbjct: 363 DPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGH 422 Query: 356 MECGVLLVR 364 +E VL R Sbjct: 423 LESMVLFSR 431 >gi|262404764|ref|ZP_06081319.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Vibrio sp. RC586] gi|262349796|gb|EEY98934.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Vibrio sp. RC586] Length = 440 Score = 89.4 bits (220), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 105/382 (27%), Positives = 173/382 (45%), Gaps = 72/382 (18%) Query: 13 QLAEKVDRLRQMMLAFQVPNLQIFRSEPI-----HYRMRAEFHIWHDGDDLYHIMFDQQT 67 Q+ K L Q+M+ F +L + S P+ YR RA + M+D++T Sbjct: 101 QINHKQQALSQLMVKFAGQSLAL--SAPVCSDDQGYRRRARLSL----------MWDKKT 148 Query: 68 KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLL 127 ++ ++ + S I + + LEP L A L +++ L SQ Q + Sbjct: 149 QQ-LQFGFRRKQSKAI----VNVTHCPVLEPSLNALLPELNTLLSQWCQPEQLGHVELVK 203 Query: 128 DDAWRECAIRLRDALHARKYQIQLIGRANKTKICL--------------DRDYVDERLTV 173 D R A+R AL + Q +L A++ ++ L + Y +E Sbjct: 204 GDNARVLALRHVGALTEQDQQ-RLTDFASQNQLTLYLALEAGTLQHVQGEPPYCEE---- 258 Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFD 232 G L + + + F Q N +N M+E L + + D +L+L+CG GNF+L LA+ Sbjct: 259 TGSRLSF--LPSHFIQVNRAVNQKMVEQALHWLEVSEQDRVLDLFCGLGNFTLPLAKQAQ 316 Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY-- 290 V+ VE + V+ A +N N +NNV F QA N +D+ S+ Sbjct: 317 EVVGVEGVEEMVQHATHNAKLNQINNVT--------FYQA-------NLEQDMTTASWAQ 361 Query: 291 -RFKTIFVDPPRSGLDDATVGMVQ-----AYPHILYISCNPDSLCRD-LSILSTTHTIER 343 +F + +DP R+G + G+V+ ++Y+SCNP +L RD S+LS +E+ Sbjct: 362 QKFAKVLLDPARAGAE----GIVEQLAALGAERVVYVSCNPATLARDSQSLLSQGFCLEK 417 Query: 344 LALFDQFPYTRHMECGVLLVRK 365 L + D FP+T H+E L V+K Sbjct: 418 LGMLDMFPHTSHLESMALFVKK 439 >gi|220930233|ref|YP_002507142.1| RNA methyltransferase, TrmA family [Clostridium cellulolyticum H10] gi|220000561|gb|ACL77162.1| RNA methyltransferase, TrmA family [Clostridium cellulolyticum H10] Length = 460 Score = 89.4 bits (220), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 60/185 (32%), Positives = 92/185 (49%), Gaps = 20/185 (10%) Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 SF Q N I +L G+ G+ + +LYCG G SL L++ RV+ VE+ + Sbjct: 287 SFFQVNP-IQTEVLYEKALEYAGLSGNETVFDLYCGIGTISLYLSQRAKRVIGVEVVPDA 345 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 + AR N N + NV+ + +++ + D+ + + VDPPR G Sbjct: 346 ISDARRNAELNGITNVEFLVGEAEKV------------IPDMYSQGVKADVVVVDPPRKG 393 Query: 304 LDDATVG-MVQAYPH-ILYISCNPDSLCRDLSILSTTHTIE--RLALFDQFPYTRHMECG 359 D+ + +V+ P I+Y+SCNP +L RDL L T H E + D FP+T H+EC Sbjct: 394 CDEVLLSTLVEMQPQRIVYVSCNPSTLARDLKYL-TEHGFEVKEVQPVDMFPWTGHVECV 452 Query: 360 VLLVR 364 VL+ R Sbjct: 453 VLMSR 457 >gi|166033376|ref|ZP_02236205.1| hypothetical protein DORFOR_03102 [Dorea formicigenerans ATCC 27755] gi|166027733|gb|EDR46490.1| hypothetical protein DORFOR_03102 [Dorea formicigenerans ATCC 27755] Length = 378 Score = 89.4 bits (220), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 61/216 (28%), Positives = 102/216 (47%), Gaps = 22/216 (10%) Query: 155 ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-- 212 ++ K ++ +RL ++R SF Q N + +L G+ G Sbjct: 180 GDREKPIFGPGFIKDRLC----GCMFRISPKSFYQVNP-VQTAILYQTAIDYAGLTGKET 234 Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G L+ A+ +V+ VE+ K +V+ AR N N + N + + F Sbjct: 235 VIDAYCGIGTIGLIAAKKAGKVIGVELNKDAVKDARINAKENKITNAAFYQGDAGRFMVE 294 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCR 330 M + E + +F+DPPR+G D+ + +V+ P ++YISCNP++L R Sbjct: 295 MAAKGE------------KADVVFMDPPRAGSDERFLSSVVKLSPKKVIYISCNPETLAR 342 Query: 331 DLSILSTTH-TIERLALFDQFPYTRHMECGVLLVRK 365 DL L+ H +E++ D FP+ H E LVRK Sbjct: 343 DLKYLTKHHYKVEKIQPVDMFPFCDHCETVCELVRK 378 >gi|197121913|ref|YP_002133864.1| (uracil-5)-methyltransferase [Anaeromyxobacter sp. K] gi|196171762|gb|ACG72735.1| (Uracil-5)-methyltransferase [Anaeromyxobacter sp. K] Length = 438 Score = 89.4 bits (220), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 86/361 (23%), Positives = 147/361 (40%), Gaps = 29/361 (8%) Query: 11 EQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKER 70 E+ L E + R+ ++ + P+ YR RA+FH HD + F +++ E Sbjct: 100 ERSLHEALRRIGKLEPGSYPARPIVPSPSPLRYRARAKFH--HDRAAGRLVFFRRRSHEP 157 Query: 71 MRI---DYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLL 127 +R+ PG + + +A +L P + +++ + +++ L LL Sbjct: 158 VRLRECHLLSPGLDALREAVGPALAAAKLSP----REVALEW-SDAAERGAAWL----LL 208 Query: 128 DDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGR--TLIYRQIEN 185 + R L A L+ +A + D V + GR R + Sbjct: 209 PEVTAPVRARAEALLRAVPSLQGLVLQAEGGQPVTAGDPVLRQARAPGRPEAGTQRSRPD 268 Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 F Q N G N ++E L ++LEL+CG GNF+ L+ V AVE+ P+++ Sbjct: 269 VFQQANRGANARLVETALELLAPAGEEVLELHCGAGNFTGPLSERARSVSAVEVQGPALD 328 Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD 305 AR ++ NV+ + +A RE + RF +DPPR G Sbjct: 329 LARADLGG---RNVRFFAGDALALARAFGRE--------AGPGARRFGAALLDPPREGAR 377 Query: 306 DATVGMVQ-AYPHILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHMECGVLLV 363 + P +Y+SC+P + RDL + + + + + D FP T H+E LL Sbjct: 378 GIGPALRDLGVPRAVYVSCDPATFARDLRACVEAGYRVAAVVPVDMFPQTHHVEGVALLE 437 Query: 364 R 364 R Sbjct: 438 R 438 >gi|332827346|gb|EGK00106.1| hypothetical protein HMPREF9455_03572 [Dysgonomonas gadei ATCC BAA-286] Length = 503 Score = 89.4 bits (220), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 65/210 (30%), Positives = 100/210 (47%), Gaps = 26/210 (12%) Query: 169 ERLTVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGDLL--ELYC 218 E LT G IY ++E SF Q N+ + L V + + GD L +LY Sbjct: 307 EVLTWKGNDFIYEEMEGLKFKIGPKSFYQTNSE-QAYNLYKVASDFARLNGDELVYDLYT 365 Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE-FTQAMRRER 277 G G + +AR +V+ +E + ++E AR+N N ++N K+ TQ E Sbjct: 366 GTGTIANFVARQSKKVVGIEYVEDAIEDARFNSMNNKIDNTLFYAGDMKDILTQDFINEH 425 Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGL-DDATVGMVQAYPH-ILYISCNPDSLCRDLSIL 335 R I DPPR+G+ DD ++ A P I+Y+SCNP + RDLS+L Sbjct: 426 G------------RPDVIITDPPRAGMHDDVIKSILFAEPQRIVYVSCNPATQARDLSLL 473 Query: 336 STTHTIERLALFDQFPYTRHMECGVLLVRK 365 + + ++ D FP+T H+E VLL ++ Sbjct: 474 DEKYKVTKVQPVDMFPHTHHVENVVLLEKR 503 >gi|262041526|ref|ZP_06014723.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259041087|gb|EEW42161.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 434 Score = 89.4 bits (220), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 60/188 (31%), Positives = 93/188 (49%), Gaps = 27/188 (14%) Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 F Q N G+N M LEW+ + +L+L+CG GNF+L LA V+ VE Sbjct: 263 FIQVNDGVNQQMVRTALEWLDLRP---EDRVLDLFCGMGNFTLPLATRAAHVVGVEGVPA 319 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDP 299 VE R N A N ++NV + +E D+ ++ F + +DP Sbjct: 320 LVEKGRENSARNGLSNVTFFHENLEE---------------DVTRQAWAKHGFDKVLLDP 364 Query: 300 PRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHME 357 R+G +++ P ++Y+SCNP +L RD ++L + I+RLA+ D FP+T H+E Sbjct: 365 ARAGAPGVMPHIIKLAPRRVVYVSCNPATLARDSETLLQAGYQIQRLAMLDMFPHTGHLE 424 Query: 358 CGVLLVRK 365 VL R+ Sbjct: 425 SMVLFERR 432 >gi|218701501|ref|YP_002409130.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia coli IAI39] gi|218371487|emb|CAR19323.1| 23S rRNA (uracil-5)-methyltransferase [Escherichia coli IAI39] Length = 433 Score = 89.4 bits (220), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 61/187 (32%), Positives = 91/187 (48%), Gaps = 27/187 (14%) Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 F Q NAG+N M LEW+ + +L+L+CG GNF+L LA V+ VE Sbjct: 263 FIQVNAGVNQKMVARALEWLDVQP---EDRVLDLFCGMGNFTLPLATQAASVVGVEGVPA 319 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDP 299 VE + N N ++NV + +E D+ + F + +DP Sbjct: 320 LVEKGQQNARLNGLHNVTFYHENLEE---------------DVTKQPWAKNGFDKVLLDP 364 Query: 300 PRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHME 357 R+G +++ P I+Y+SCNP +L RD ++L +TI RLA+ D FP+T H+E Sbjct: 365 ARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLE 424 Query: 358 CGVLLVR 364 VL R Sbjct: 425 SMVLFSR 431 >gi|194434671|ref|ZP_03066925.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Shigella dysenteriae 1012] gi|194417068|gb|EDX33183.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Shigella dysenteriae 1012] gi|332089082|gb|EGI94192.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Shigella dysenteriae 155-74] Length = 433 Score = 89.4 bits (220), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 62/189 (32%), Positives = 93/189 (49%), Gaps = 31/189 (16%) Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIA 240 F Q NAG+N M LEW+ +Q + +L+L+CG GNF+L LA V++VE Sbjct: 263 FIQVNAGVNQKMVARALEWL-----DVQPEDRVLDLFCGMGNFTLPLATQAASVVSVEGV 317 Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFV 297 VE + N N + NV + +E D+ + F + + Sbjct: 318 PALVEKGQQNARLNGLQNVTFYHENLEE---------------DVTNQPWAKNGFDKVLL 362 Query: 298 DPPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRH 355 DP R+G +++ P I+Y+SCNP +L RD ++L +TI RLA+ D FP+T H Sbjct: 363 DPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGH 422 Query: 356 MECGVLLVR 364 +E VL R Sbjct: 423 LESMVLFSR 431 >gi|15832899|ref|NP_311672.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia coli O157:H7 str. Sakai] gi|13363116|dbj|BAB37068.1| putative enzyme [Escherichia coli O157:H7 str. Sakai] Length = 433 Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 61/187 (32%), Positives = 90/187 (48%), Gaps = 27/187 (14%) Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 F Q NAG+N M LEW+ + +L+L+CG GNF+L LA V+ VE Sbjct: 263 FIQVNAGVNQKMVARALEWLEVEP---EDRVLDLFCGMGNFTLPLATQAASVVGVEGVPA 319 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDP 299 VE + N N + NV + +E D+ + F + +DP Sbjct: 320 LVEKGQQNARLNCLQNVTFYHENLEE---------------DVTKQPWAKNGFDKVLLDP 364 Query: 300 PRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHME 357 R+G +++ P I+Y+SCNP +L RD ++L +TI RLA+ D FP+T H+E Sbjct: 365 ARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLE 424 Query: 358 CGVLLVR 364 VL R Sbjct: 425 SMVLFSR 431 >gi|331648510|ref|ZP_08349598.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli M605] gi|330908811|gb|EGH37325.1| 23S rRNA (Uracil-5-) -methyltransferase RumA [Escherichia coli AA86] gi|331042257|gb|EGI14399.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli M605] Length = 433 Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 62/189 (32%), Positives = 92/189 (48%), Gaps = 31/189 (16%) Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIA 240 F Q NAG+N M LEW+ +Q + +L+L+CG GNF+L LA V+ VE Sbjct: 263 FIQVNAGVNQKMVARALEWL-----DVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGV 317 Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFV 297 VE + N N + NV + +E D+ + F + + Sbjct: 318 PALVEKGQQNARLNGLQNVTFYHENLEE---------------DVTKQPWAKNGFDKVLL 362 Query: 298 DPPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRH 355 DP R+G +++ P I+Y+SCNP +L RD ++L +TI RLA+ D FP+T H Sbjct: 363 DPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGH 422 Query: 356 MECGVLLVR 364 +E VL R Sbjct: 423 LESMVLFSR 431 >gi|77359689|ref|YP_339264.1| 23S rRNA (uracil-5)-methyltransferase, responsible for modification at position U1939, SAM-dependent [Pseudoalteromonas haloplanktis TAC125] gi|123587143|sp|Q3IDM6|RUMA_PSEHT RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|76874600|emb|CAI85821.1| 23S rRNA (uracil-5)-methyltransferase, responsible for modification at position U1939, SAM-dependent [Pseudoalteromonas haloplanktis TAC125] Length = 441 Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 60/187 (32%), Positives = 100/187 (53%), Gaps = 21/187 (11%) Query: 185 NSFTQPNAGINVHMLE----WVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240 N+F Q NA +N ML+ W+ A KG + ++L+L+CG GNFSLVLA+ V+ VE Sbjct: 270 NNFIQVNASVNQAMLKQAQNWL--ALKGDE-NVLDLFCGIGNFSLVLAKQAKTVIGVEGV 326 Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300 +V A N H N++ + + + T + FN K++D+ + +DP Sbjct: 327 ASAVAMATQNA---HTNSITNAQFNCFDLTNKIETASWFN--KNLDV-------LVLDPS 374 Query: 301 RSGLDDATVGM-VQAYPHILYISCNPDSLCRDLSILSTT-HTIERLALFDQFPYTRHMEC 358 R+G + ++ + ILY+SC+P +L RD +I+S + ++ L + FP+T H+E Sbjct: 375 RTGAITVLEQLPLKQFKTILYVSCDPVTLARDSAIISQAGFELHKIGLMNMFPHTGHIET 434 Query: 359 GVLLVRK 365 L R+ Sbjct: 435 MALFQRR 441 >gi|26249186|ref|NP_755226.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia coli CFT073] gi|110642926|ref|YP_670656.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia coli 536] gi|191171273|ref|ZP_03032823.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli F11] gi|218690908|ref|YP_002399120.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia coli ED1a] gi|227888323|ref|ZP_04006128.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia coli 83972] gi|300976049|ref|ZP_07173264.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS 45-1] gi|300976310|ref|ZP_07173374.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS 200-1] gi|301049458|ref|ZP_07196416.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS 185-1] gi|306812335|ref|ZP_07446533.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia coli NC101] gi|331658896|ref|ZP_08359838.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli TA206] gi|34222885|sp|Q8FEG6|RUMA_ECOL6 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|123147767|sp|Q0TE74|RUMA_ECOL5 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|26109593|gb|AAN81796.1|AE016765_198 23S rRNA (Uracil-5-)-methyltransferase rumA [Escherichia coli CFT073] gi|110344518|gb|ABG70755.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli 536] gi|190908573|gb|EDV68162.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli F11] gi|218428472|emb|CAR09398.2| 23S rRNA (uracil-5)-methyltransferase [Escherichia coli ED1a] gi|227834592|gb|EEJ45058.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia coli 83972] gi|281179786|dbj|BAI56116.1| putative RNA methyltransferase [Escherichia coli SE15] gi|300298689|gb|EFJ55074.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS 185-1] gi|300308552|gb|EFJ63072.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS 200-1] gi|300410146|gb|EFJ93684.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS 45-1] gi|305854373|gb|EFM54811.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia coli NC101] gi|307554757|gb|ADN47532.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli ABU 83972] gi|315293742|gb|EFU53094.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS 153-1] gi|315298722|gb|EFU57976.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS 16-3] gi|320194924|gb|EFW69553.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia coli WV_060327] gi|324005669|gb|EGB74888.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS 57-2] gi|324015533|gb|EGB84752.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS 60-1] gi|331053478|gb|EGI25507.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli TA206] Length = 433 Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 61/187 (32%), Positives = 90/187 (48%), Gaps = 27/187 (14%) Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 F Q NAG+N M LEW+ + +L+L+CG GNF+L LA V+ VE Sbjct: 263 FIQVNAGVNQKMVARALEWLDVEP---EDRVLDLFCGMGNFTLPLATQAASVVGVEGVPA 319 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDP 299 VE + N N + NV + +E D+ + F + +DP Sbjct: 320 LVEKGQQNARLNGLQNVTFYHENLEE---------------DVTKQPWAKNGFDKVLLDP 364 Query: 300 PRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHME 357 R+G +++ P I+Y+SCNP +L RD ++L +TI RLA+ D FP+T H+E Sbjct: 365 ARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLE 424 Query: 358 CGVLLVR 364 VL R Sbjct: 425 SMVLFSR 431 >gi|15803306|ref|NP_289339.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia coli O157:H7 EDL933] gi|168750996|ref|ZP_02776018.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli O157:H7 str. EC4113] gi|168758476|ref|ZP_02783483.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli O157:H7 str. EC4401] gi|168764498|ref|ZP_02789505.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli O157:H7 str. EC4501] gi|168766753|ref|ZP_02791760.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli O157:H7 str. EC4486] gi|168778773|ref|ZP_02803780.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli O157:H7 str. EC4076] gi|168788043|ref|ZP_02813050.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli O157:H7 str. EC869] gi|168802534|ref|ZP_02827541.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli O157:H7 str. EC508] gi|195936387|ref|ZP_03081769.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia coli O157:H7 str. EC4024] gi|208809717|ref|ZP_03252054.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli O157:H7 str. EC4206] gi|208813103|ref|ZP_03254432.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli O157:H7 str. EC4045] gi|208820580|ref|ZP_03260900.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli O157:H7 str. EC4042] gi|209399664|ref|YP_002272250.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli O157:H7 str. EC4115] gi|217326646|ref|ZP_03442729.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli O157:H7 str. TW14588] gi|254794727|ref|YP_003079564.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia coli O157:H7 str. TW14359] gi|261226084|ref|ZP_05940365.1| 23S rRNA (uracil-5)-methyltransferase [Escherichia coli O157:H7 str. FRIK2000] gi|261256661|ref|ZP_05949194.1| 23S rRNA (uracil-5)-methyltransferase [Escherichia coli O157:H7 str. FRIK966] gi|291284114|ref|YP_003500932.1| 23S rRNA (uracil-5-)-methyltransferase rumA (23S rRNA(M- 5-U1939)-methyltransferase) [Escherichia coli O55:H7 str. CB9615] gi|20140032|sp|Q8XED8|RUMA_ECO57 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|12517257|gb|AAG57898.1|AE005506_6 putative enzyme [Escherichia coli O157:H7 str. EDL933] gi|188014871|gb|EDU52993.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli O157:H7 str. EC4113] gi|189003420|gb|EDU72406.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli O157:H7 str. EC4076] gi|189354711|gb|EDU73130.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli O157:H7 str. EC4401] gi|189363623|gb|EDU82042.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli O157:H7 str. EC4486] gi|189365488|gb|EDU83904.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli O157:H7 str. EC4501] gi|189372225|gb|EDU90641.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli O157:H7 str. EC869] gi|189375496|gb|EDU93912.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli O157:H7 str. EC508] gi|208729518|gb|EDZ79119.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli O157:H7 str. EC4206] gi|208734380|gb|EDZ83067.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli O157:H7 str. EC4045] gi|208740703|gb|EDZ88385.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli O157:H7 str. EC4042] gi|209161064|gb|ACI38497.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli O157:H7 str. EC4115] gi|209761438|gb|ACI79031.1| putative enzyme [Escherichia coli] gi|209761440|gb|ACI79032.1| putative enzyme [Escherichia coli] gi|209761442|gb|ACI79033.1| putative enzyme [Escherichia coli] gi|209761444|gb|ACI79034.1| putative enzyme [Escherichia coli] gi|209761446|gb|ACI79035.1| putative enzyme [Escherichia coli] gi|217319013|gb|EEC27438.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli O157:H7 str. TW14588] gi|254594127|gb|ACT73488.1| 23S rRNA (uracil-5)-methyltransferase [Escherichia coli O157:H7 str. TW14359] gi|290763987|gb|ADD57948.1| 23S rRNA (uracil-5-)-methyltransferase rumA (23S rRNA(M- 5-U1939)-methyltransferase) [Escherichia coli O55:H7 str. CB9615] gi|320189118|gb|EFW63777.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia coli O157:H7 str. EC1212] gi|320640433|gb|EFX09972.1| 23S rRNA m(5)U1939 methyltransferase [Escherichia coli O157:H7 str. G5101] gi|320645680|gb|EFX14665.1| 23S rRNA m(5)U1939 methyltransferase [Escherichia coli O157:H- str. 493-89] gi|320650980|gb|EFX19420.1| 23S rRNA m(5)U1939 methyltransferase [Escherichia coli O157:H- str. H 2687] gi|320656476|gb|EFX24372.1| 23S rRNA m(5)U1939 methyltransferase [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320662372|gb|EFX29769.1| 23S rRNA m(5)U1939 methyltransferase [Escherichia coli O55:H7 str. USDA 5905] gi|320667070|gb|EFX34033.1| 23S rRNA m(5)U1939 methyltransferase [Escherichia coli O157:H7 str. LSU-61] gi|326339143|gb|EGD62958.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia coli O157:H7 str. 1044] gi|326342974|gb|EGD66742.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia coli O157:H7 str. 1125] Length = 433 Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 61/187 (32%), Positives = 90/187 (48%), Gaps = 27/187 (14%) Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 F Q NAG+N M LEW+ + +L+L+CG GNF+L LA V+ VE Sbjct: 263 FIQVNAGVNQKMVARALEWLEVEP---EDRVLDLFCGMGNFTLPLATQAASVVGVEGVPA 319 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDP 299 VE + N N + NV + +E D+ + F + +DP Sbjct: 320 LVEKGQQNARLNCLQNVTFYHENLEE---------------DVTKQPWAKNGFDKVLLDP 364 Query: 300 PRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHME 357 R+G +++ P I+Y+SCNP +L RD ++L +TI RLA+ D FP+T H+E Sbjct: 365 ARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLE 424 Query: 358 CGVLLVR 364 VL R Sbjct: 425 SMVLFSR 431 >gi|320182397|gb|EFW57294.1| 23S rRNA 5-methyluridine methyltransferase [Shigella boydii ATCC 9905] Length = 433 Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 61/187 (32%), Positives = 90/187 (48%), Gaps = 27/187 (14%) Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 F Q NAG+N M LEW+ + +L+L+CG GNF+L LA V+ VE Sbjct: 263 FIQVNAGVNQKMVARALEWLDVQP---EDRVLDLFCGMGNFTLPLATQAASVVGVEGVPA 319 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDP 299 VE + N N + NV + +E D+ + F + +DP Sbjct: 320 LVEKGQQNARLNGLQNVTFYHENLEE---------------DVTNQPWAKNGFDKVLLDP 364 Query: 300 PRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHME 357 R+G +++ P I+Y+SCNP +L RD ++L +TI RLA+ D FP+T H+E Sbjct: 365 ARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLE 424 Query: 358 CGVLLVR 364 VL R Sbjct: 425 SMVLFSR 431 >gi|332087562|gb|EGI92690.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Shigella boydii 5216-82] Length = 433 Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 61/187 (32%), Positives = 90/187 (48%), Gaps = 27/187 (14%) Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 F Q NAG+N M LEW+ + +L+L+CG GNF+L LA V+ VE Sbjct: 263 FIQVNAGVNQKMVARALEWLDVQP---EDRVLDLFCGMGNFTLPLATQAASVVGVEGVPA 319 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDP 299 VE + N N + NV + +E D+ + F + +DP Sbjct: 320 LVEKGQQNARLNGLQNVTFYHENLEE---------------DVTNQPWAKNGFDKVLLDP 364 Query: 300 PRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHME 357 R+G +++ P I+Y+SCNP +L RD ++L +TI RLA+ D FP+T H+E Sbjct: 365 ARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLE 424 Query: 358 CGVLLVR 364 VL R Sbjct: 425 SMVLFSR 431 >gi|269101852|ref|ZP_06154549.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Photobacterium damselae subsp. damselae CIP 102761] gi|268161750|gb|EEZ40246.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Photobacterium damselae subsp. damselae CIP 102761] Length = 441 Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 98/377 (25%), Positives = 169/377 (44%), Gaps = 57/377 (15%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPI-----HYRMRAEFHIWHDGDDLYHIMF- 63 ++ Q+ K L ++M F + I +++PI HYR A F I D F Sbjct: 98 HQGQVTAKQQSLTELMTKFAGADQAITQAKPIVGPDTHYRRCARFGIRLDNRGQLQFGFR 157 Query: 64 DQQTKERMRIDYFMPGSLLINALMIEMMATIR--LEPLL-RAKLFQIDYLTSQSDQAIVT 120 +Q+KE + + P +++ + E++ +R L L R L ++ + ++D V Sbjct: 158 KKQSKEIVDV----PQCMVLAQSLNELLPVLRELLNSLKGRKHLGHVELV--EADNGRVV 211 Query: 121 LIYH-RLLDDAWRECAIRLRDALHARKYQIQLIGRANK---TKICLDRDYVDERLTVAGR 176 +I H + DA + A+ QI L +I DR Y + + + Sbjct: 212 MIRHLQPFSDADMSKLLEF-----AKSQQIMLFMAPTADSIEQIFGDRPYYE----LDCQ 262 Query: 177 TLIYRQIENSFTQPNAGINVHM----LEWVLAATKGIQGD--LLELYCGNGNFSLVLARH 230 L + F Q N +N+ M ++W+ +Q D +L+L+CG GNFSL LA+ Sbjct: 263 KLYFS--PKDFIQVNRDVNIAMVKQAIDWL-----DVQADDRVLDLFCGLGNFSLPLAKR 315 Query: 231 FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNRLKDIDIHS 289 + ++ VE V A+ N N +NN + + ++ T+ ++ FN+ Sbjct: 316 ANTLVGVEGVDEMVHRAQDNAQYNQINNAAFFQANLEQDVTEFSWAKKPFNK-------- 367 Query: 290 YRFKTIFVDPPRSGLDDATVGMVQAYPH-ILYISCNPDSLCRDLSI-LSTTHTIERLALF 347 I +DP R+G +V+ P ++Y+SCNP +L RD I L + + +L + Sbjct: 368 -----ILLDPARAGAAGVMEHVVKLAPEKVVYVSCNPATLARDSQILLHKGYQLTQLGMM 422 Query: 348 DQFPYTRHMECGVLLVR 364 D FP+T H+E L VR Sbjct: 423 DMFPHTGHLESMALFVR 439 >gi|56418892|ref|YP_146210.1| RNA methyltransferase [Geobacillus kaustophilus HTA426] gi|56378734|dbj|BAD74642.1| RNA methyltransferase [Geobacillus kaustophilus HTA426] Length = 462 Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 60/215 (27%), Positives = 108/215 (50%), Gaps = 26/215 (12%) Query: 163 DRDYVDERLTVAGRTLIYRQIE--------NSFTQPNAGINVHMLEWVLAATKG-IQGDL 213 DR ++ +AGR IY ++ ++F Q N ++E L K ++ Sbjct: 259 DRTQAEQTHVLAGRDFIYDELCGFRYRLWFDTFFQTNPVQAAKLVELALEMGKPQPHENM 318 Query: 214 LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273 ++L+CG G FSL A+ + +EI + S+E+A+ N N ++N + Sbjct: 319 IDLFCGVGTFSLPFAKRVKALAGIEIVETSIESAKRNAKDNGIDNTYFL----------- 367 Query: 274 RREREFNRLKDIDIHSY-RFKTIFVDPPRSGLDDATVGMV-QAYPH-ILYISCNPDSLCR 330 R+ R D + + R + + +DPPRSG + + +A P ++Y+SCNP++ Sbjct: 368 --ARDARRGIDEVLEQFGRPELLLLDPPRSGAGGKVMRKIGRARPERVVYVSCNPETFAS 425 Query: 331 DLS-ILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D++ ++S +T++ + D FP+T H+EC LLVR Sbjct: 426 DITELVSFGYTLKTVQPVDMFPHTAHVECCALLVR 460 >gi|116493111|ref|YP_804846.1| tRNA (uracil-5-)-methyltransferase related enzyme [Pediococcus pentosaceus ATCC 25745] gi|116103261|gb|ABJ68404.1| 23S rRNA m(5)U-1939 methyltransferase [Pediococcus pentosaceus ATCC 25745] Length = 455 Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 91/385 (23%), Positives = 170/385 (44%), Gaps = 53/385 (13%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFRS----EPIHYRMRAEFHIWHDGDDLYHIMFDQ 65 Y+ QL K ++++ ++ + +L++ + P YR +A+ + L F + Sbjct: 93 YDAQLKFKQNQIKNLLKKSHLEDLEVADTVGMENPTGYRNKAQIPVRKIKGKLQTGFFKR 152 Query: 66 QTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHR 125 + + + I+ F +I+ +++E+ +R F ID ++ I+ I R Sbjct: 153 NSHDLVPIEDFYIQDPVIDKVIVEVRDILRE--------FYIDPYREAENKGIIRNIMVR 204 Query: 126 LLDDAWRECAI---RLRDALHARKYQIQLIGRANKTKICLDRDYV-------DERLTVAG 175 + + + R +D H + + + + +Y DE +AG Sbjct: 205 RGRRSGQIMVVLITRTKDVPHLAEITEAIAAIDGVVSVIQNINYKQTNVIMGDEDRVLAG 264 Query: 176 RTLIYRQI--------ENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSL 225 ++I+ ++ +SF Q N I L + G+ G+ ++++Y G G SL Sbjct: 265 ESVIHDELLGLDFIISAHSFYQVNP-IQTEKLYQLAIDKAGLTGEETVIDVYSGIGTISL 323 Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285 +A+ +V VEI K +V+ A+ N N+ +N + V ++E M++ +E D+ Sbjct: 324 AMAKAAKKVYGVEIVKEAVQDAKINAFQNNASNTEFVVGKAEE---QMQKWQEDGLKPDV 380 Query: 286 DIHSYRFKTIFVDPPRSGLD----DATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTI 341 + VDPPR GLD DATVGM ++Y+SCNP +L RD+ + Sbjct: 381 ---------VVVDPPRKGLDQSVIDATVGM--KPKRVVYVSCNPATLVRDIDRFGEQGYV 429 Query: 342 --ERLALFDQFPYTRHMECGVLLVR 364 + + DQFP T H+E +L R Sbjct: 430 VNQPIVPVDQFPQTPHVESVTVLER 454 >gi|145640279|ref|ZP_01795863.1| 23S rRNA (uracil-5-)-methyltransferase [Haemophilus influenzae R3021] gi|145274865|gb|EDK14727.1| 23S rRNA (uracil-5-)-methyltransferase [Haemophilus influenzae 22.4-21] Length = 404 Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 59/183 (32%), Positives = 88/183 (48%), Gaps = 17/183 (9%) Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 F Q N +N M+ L + Q D +L+L+CG GNF+L LA+ + +E V+ Sbjct: 235 FIQVNRALNERMVNTALDWLELSQQDCVLDLFCGMGNFTLPLAKRVKSAVGIEGVFEMVQ 294 Query: 246 AARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 A N A N + N++ + + F + + FN+ I +DPPRSG Sbjct: 295 KAAQNAARNQIKNIEFFQADLDQSFVEQPWANQSFNK-------------ILLDPPRSGA 341 Query: 305 DDATVGMVQ-AYPHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLL 362 A + + ILY+SCNP +L RD IL + IE+ A+ D FP+T H+E L Sbjct: 342 AFALNALCELKAEKILYVSCNPATLVRDAEILCDFGYKIEKSAVIDMFPHTGHLESITLF 401 Query: 363 VRK 365 K Sbjct: 402 TTK 404 >gi|145628685|ref|ZP_01784485.1| 23S rRNA (uracil-5-)-methyltransferase [Haemophilus influenzae 22.1-21] gi|145638756|ref|ZP_01794365.1| molybdenum cofactor biosynthesis protein [Haemophilus influenzae PittII] gi|144979155|gb|EDJ88841.1| 23S rRNA (uracil-5-)-methyltransferase [Haemophilus influenzae 22.1-21] gi|145272351|gb|EDK12259.1| molybdenum cofactor biosynthesis protein [Haemophilus influenzae PittII] gi|309750246|gb|ADO80230.1| 23S rRNA m5U1939 methyltransferase [Haemophilus influenzae R2866] Length = 438 Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 59/183 (32%), Positives = 88/183 (48%), Gaps = 17/183 (9%) Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 F Q N +N M+ L + Q D +L+L+CG GNF+L LA+ + +E V+ Sbjct: 269 FIQVNRALNERMVNTALDWLELSQQDCVLDLFCGMGNFTLPLAKRVKSAVGIEGVFEMVQ 328 Query: 246 AARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 A N A N + N++ + + F + + FN+ I +DPPRSG Sbjct: 329 KAAQNAARNQIKNIEFFQADLDQSFVEQPWANQSFNK-------------ILLDPPRSGA 375 Query: 305 DDATVGMVQ-AYPHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLL 362 A + + ILY+SCNP +L RD IL + IE+ A+ D FP+T H+E L Sbjct: 376 AFALNALCELKAEKILYVSCNPATLVRDAEILCDFGYKIEKSAVIDMFPHTGHLESITLF 435 Query: 363 VRK 365 K Sbjct: 436 TTK 438 >gi|212697151|ref|ZP_03305279.1| hypothetical protein ANHYDRO_01717 [Anaerococcus hydrogenalis DSM 7454] gi|212675926|gb|EEB35533.1| hypothetical protein ANHYDRO_01717 [Anaerococcus hydrogenalis DSM 7454] Length = 547 Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 65/275 (23%), Positives = 125/275 (45%), Gaps = 43/275 (15%) Query: 100 LRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTK 159 +R LF + L +++D IV+ IYH + D L DA+ + + + Sbjct: 225 MRRDLFAHNLLNAKTDGRIVS-IYHVINDS--------LSDAV-----------KVDSME 264 Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYC 218 + + Y++E++ L ++ SF QPN + + + A ++L+LY Sbjct: 265 LLFGKKYIEEKMN----DLKFQISPFSFFQPNVFTAEKIYQKAIELANVDKNKNILDLYS 320 Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278 G G + + A+ ++ + +EI + +VE A N N + N+ + Sbjct: 321 GTGTITQLFAKSANKAMGIEIVEEAVEKAFDNAKENQIENIDFIAG-------------- 366 Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSI-L 335 + L+ I++ ++ + +DPPR G++ + + +YISCNP + RD+ I + Sbjct: 367 -DVLEKINLVKGKYDIVVLDPPREGINPKAIKKIMDINPKEFVYISCNPKTQVRDIEIFM 425 Query: 336 STTHTIERLALFDQFPYTRHMECGVLLVRKPSGWH 370 + +E+ FDQFP +RH+E LL + + H Sbjct: 426 ENGYIVEKYQAFDQFPRSRHVETVALLSKLNTEHH 460 >gi|239617809|ref|YP_002941131.1| RNA methyltransferase, TrmA family [Kosmotoga olearia TBF 19.5.1] gi|239506640|gb|ACR80127.1| RNA methyltransferase, TrmA family [Kosmotoga olearia TBF 19.5.1] Length = 440 Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 91/378 (24%), Positives = 166/378 (43%), Gaps = 42/378 (11%) Query: 9 QYEQQLAEKV----DRLRQMMLAFQVPNLQIFRSEPI-HYRMRAEFHIWHDGDDLYHIMF 63 QY QL K ++ R++ +++P+ ++ S+ HYR R E+ + G + M+ Sbjct: 82 QYSNQLLWKKRIVQEQFRRVGKFYELPDFEMIPSKKTNHYRNRMEYVAYQKGKKIGFGMY 141 Query: 64 DQQTKERMRI---DYFMPGSLLINALMIEMMATIRLEPLLRAK---LFQIDYLTSQSDQA 117 + + E + + D G + E+++ ++P R + L + Sbjct: 142 KRFSNEVVDVEDCDLGYEGFGKVRRTFEEILSRFGVKPYNRESKRGFLKHLVLRGNRNGD 201 Query: 118 IVTLIYHRL-----LDDAWRECAIRLRDA---LHARKYQIQLIGRANKTKICLDRDYVDE 169 IV L+ + +D RE +L + +H + ++ R ++ + E Sbjct: 202 IVALLITKRESFPEIDKISREVKEQLPEVTSLVHVFNSRDDVVLRG-PYRVIYGEGIITE 260 Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLA 228 L A +++ SF Q N + +L++V + L+LY G G F+ A Sbjct: 261 TLGDA----VFQVPPVSFFQANVFVMEELLKYVQQELNPSPSETFLDLYSGIGTFAFYFA 316 Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288 R F +V+AVE K S A N N ++N++ V M +++F ++ + Sbjct: 317 RMFKKVVAVEGIKISSRAMLSNARINMISNLEAVNMDTRDF---------------LEKN 361 Query: 289 SYRFKTIFVDPPRSGLDDATVGMVQAYPH-ILYISCNPDSLCRDLSILSTT-HTIERLAL 346 +F + +DPPR+G+ + +A P I+YISCNP +L RD LS +++ L Sbjct: 362 EEKFDKVILDPPRAGIGKDIELIGKALPKRIVYISCNPTTLARDSRYLSNKGFSLKALRA 421 Query: 347 FDQFPYTRHMECGVLLVR 364 FD FP T H+E + R Sbjct: 422 FDMFPDTHHVEVVAIFNR 439 >gi|309777091|ref|ZP_07672057.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Erysipelotrichaceae bacterium 3_1_53] gi|308915161|gb|EFP60935.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Erysipelotrichaceae bacterium 3_1_53] Length = 441 Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 96/341 (28%), Positives = 150/341 (43%), Gaps = 33/341 (9%) Query: 39 EPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEP 98 E HYR + + + D + + + D + S IN ++ EM L+ Sbjct: 120 EYTHYRNKGQIPVGMDKGKTVTGFYRINSNSIIDTDTCLIQSERINEVLQEMRRL--LQT 177 Query: 99 LLRAKLFQ---IDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRA 155 AK+F+ I + S SD+ +V I H +E L +AL K I + + Sbjct: 178 YNNAKVFRHLLIKHAFS-SDEVMVVWIVHSFQIPHEKEMVRELSEALPFVKSIIVNLNQR 236 Query: 156 NKTKICLDRDYV--DERLTVAG-RTLIYRQIENSFTQPNAG----INVHMLEWVLAATKG 208 I +++ + ER+ V L + SF Q N + LE+ K Sbjct: 237 TDNVILGEKEKLLYGERVIVDSIHDLKFSISSKSFYQVNPKQTEVLYGKALEFAQLTGKE 296 Query: 209 IQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268 +L+LYCG G S+ LA+ V +EI +++ AR N A N + N++ V + Sbjct: 297 T---VLDLYCGVGTISMFLAQQARHVTGIEIVPQAIQDARKNAALNGIANIEFVCSDAAS 353 Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD-DATVGMVQAYPH-ILYISCNPD 326 + + +L + +H I VDPPR G D +A MV P I+Y+SC+P Sbjct: 354 YAK---------KLCEQGMH---LDVIVVDPPRKGCDAEAIESMVMMQPKRIVYVSCDPG 401 Query: 327 SLCRDLSILSTT--HTIERLALFDQFPYTRHMECGVLLVRK 365 +L RDL +L HT E + + FP+T H+E VLL RK Sbjct: 402 TLARDLKLLKEKGYHT-EIVQPVEMFPFTHHVETVVLLCRK 441 >gi|313888449|ref|ZP_07822116.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Peptoniphilus harei ACS-146-V-Sch2b] gi|312845478|gb|EFR32872.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Peptoniphilus harei ACS-146-V-Sch2b] Length = 542 Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 49/154 (31%), Positives = 81/154 (52%), Gaps = 14/154 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + +LYCG G+ SL +A+ V+ +EI + +V+ AR N N++ + V ++E + Sbjct: 284 IYDLYCGVGSISLSVAKSGPEVIGIEIVESAVDDARENAEKNNIK-ARFVHGPAEETIEK 342 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCR 330 + E + K I VDPPR GLD+ V ++ P ++YISCNP + R Sbjct: 343 LWEEEKIAPNK-----------IIVDPPRKGLDEKLVNFLKENPVERLVYISCNPATQAR 391 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 DL L + +E++++ + FP T H E LL + Sbjct: 392 DLKSLKEVYKVEKISVVNLFPNTAHCETVALLSK 425 >gi|145636398|ref|ZP_01792067.1| 23S rRNA (uracil-5-)-methyltransferase [Haemophilus influenzae PittHH] gi|145270563|gb|EDK10497.1| 23S rRNA (uracil-5-)-methyltransferase [Haemophilus influenzae PittHH] Length = 354 Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 58/183 (31%), Positives = 88/183 (48%), Gaps = 17/183 (9%) Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 F Q N+ +N M+ L + Q D +L+L+CG GNF+L A+ + +E V+ Sbjct: 185 FIQVNSALNERMVNTALDWLELSQQDCVLDLFCGMGNFTLPFAKRVKSAVGIEGVFEMVQ 244 Query: 246 AARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 A N A N + N++ + + F + + FN+ I +DPPRSG Sbjct: 245 KAAQNAARNQIKNIEFFQADLDQSFVEQPWANQSFNK-------------ILLDPPRSGA 291 Query: 305 DDATVGMVQ-AYPHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLL 362 A + + ILY+SCNP +L RD IL + IE+ A+ D FP+T H+E L Sbjct: 292 AFALNALCELKAEKILYVSCNPATLVRDAEILCDFGYKIEKSAVIDMFPHTGHLESITLF 351 Query: 363 VRK 365 K Sbjct: 352 TTK 354 >gi|83590746|ref|YP_430755.1| RNA methyltransferase [Moorella thermoacetica ATCC 39073] gi|83573660|gb|ABC20212.1| 23S rRNA m(5)U-1939 methyltransferase [Moorella thermoacetica ATCC 39073] Length = 473 Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 69/227 (30%), Positives = 105/227 (46%), Gaps = 24/227 (10%) Query: 146 KYQIQLIGR--ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL 203 +YQ + R + RDY++ERL L + +F Q N+ +L Sbjct: 259 RYQEGFVPRRLGGRPFTLYGRDYLEERLG----DLRFYISATTFFQVNS-AQAEVLYNKA 313 Query: 204 AATKGIQG--DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261 A G+QG ++L+ YCG+G +L L+R RV VE+ ++ AR N N++ NV Sbjct: 314 ATFAGLQGGEEVLDAYCGSGAIALWLSRQAGRVEGVEVVPEAIVDARRNSILNNLANVHF 373 Query: 262 VRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HIL 319 R + E L + YR + I +DPPR+G D + V ++ Sbjct: 374 -RTGAAEAV-----------LPRLAGKGYRPEVIILDPPRAGCDRRVLAAVATMEPRRVV 421 Query: 320 YISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRK 365 YISCNP +L RDL+ L + D FP+T H+EC LV++ Sbjct: 422 YISCNPSTLARDLAHLREAGFKPGPVQPVDMFPHTHHVECCCFLVKE 468 >gi|51893956|ref|YP_076647.1| RNA methyltransferase [Symbiobacterium thermophilum IAM 14863] gi|51857645|dbj|BAD41803.1| RNA methyltransferase [Symbiobacterium thermophilum IAM 14863] Length = 459 Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 103/373 (27%), Positives = 160/373 (42%), Gaps = 51/373 (13%) Query: 12 QQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERM 71 QQ+ + V+RL ++ P L + ++P YR +A+F + + F + + Sbjct: 104 QQVVDAVERLGRLSGVTVHPTLGM--ADPWGYRNKAQFPVGRRSGRVIAGFFAPGSHRIV 161 Query: 72 RIDYFMPGSLLINALMIEM--MATIRLEPL---------LRAKLFQIDYLTSQSDQAIVT 120 I+ L N +M E+ +A P+ LR L ++ T ++ +VT Sbjct: 162 DIERCAIQHPLANRIMAEVKELAGRFGVPIYDERSHTGVLRHVLARVGRGTGEAMAVLVT 221 Query: 121 LIYH-RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179 H D RE R+ + + +Q I A +T + L R E +AGR I Sbjct: 222 NGPHLPRGKDIARELMTRIPELVSV----VQNINPA-RTNVVLGR----ESRVLAGRDAI 272 Query: 180 YRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLAR 229 I + SF Q N + + L G+ G +++LYCG G SL LAR Sbjct: 273 TDYIGDLQFSISPVSFFQVNPAQTEVLYDKALE-YAGLTGSETVIDLYCGIGTISLFLAR 331 Query: 230 HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHS 289 V+ +E + +V AR N A N + NV+ + + E RL Sbjct: 332 RCREVVGIEWVEEAVADARENAARNGIGNVRFIAGDAAV---------EMPRLA---AEG 379 Query: 290 YRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCRDLSILSTT--HTIERLA 345 R I +DPPR G D + + Q P ++Y+SCNP SL RDL L+ T+E + Sbjct: 380 VRADVIVLDPPRKGCDGPVLEAIAQVAPRRVVYVSCNPASLARDLGRLAEMGYRTVE-VQ 438 Query: 346 LFDQFPYTRHMEC 358 D FP+T H+EC Sbjct: 439 PVDMFPHTAHVEC 451 >gi|307297804|ref|ZP_07577610.1| protein of unknown function Met10 [Thermotogales bacterium mesG1.Ag.4.2] gi|306917064|gb|EFN47446.1| protein of unknown function Met10 [Thermotogales bacterium mesG1.Ag.4.2] Length = 439 Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 58/184 (31%), Positives = 93/184 (50%), Gaps = 20/184 (10%) Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 +F Q N + ++ + K GD LL+LY G G FS+ + + RV AVE SV Sbjct: 271 AFFQNNLEVTESIVSHIFNEMKDTAGDSLLDLYSGIGTFSITVGKKMGRVTAVESNPVSV 330 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 +A + N N + ++IV EF ++ +R + TI +DPPRSG+ Sbjct: 331 KALKANSNLNGMFGIEIVSSDVIEFLKSDQRH---------------YSTIILDPPRSGV 375 Query: 305 DDATVGMVQAY--PHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVL 361 + +G++ + + Y+SC+P +L RD + L + + I + FD FP T H+E V Sbjct: 376 -GSEIGLLDKFGASMVFYVSCDPTTLARDTAKLRESGYKISSVKAFDMFPQTWHVETVVC 434 Query: 362 LVRK 365 LV+K Sbjct: 435 LVKK 438 >gi|107100389|ref|ZP_01364307.1| hypothetical protein PaerPA_01001414 [Pseudomonas aeruginosa PACS2] Length = 452 Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 66/193 (34%), Positives = 91/193 (47%), Gaps = 25/193 (12%) Query: 177 TLIYRQIENSFTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD 232 TL YR F Q NA +N M L+W LA T + +L+L+CG GNFSL LAR Sbjct: 275 TLAYR--PGDFVQVNAPVNESMIRQALDW-LAPTADER--VLDLFCGLGNFSLPLARRVA 329 Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNRLKDIDIHSYR 291 RV+ VE VE A N AN + N + SK +A E+ F Sbjct: 330 RVVGVEGVAAMVERAGANALANGLGNAHFFQADLSKALAEAPWAEQGFT----------- 378 Query: 292 FKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSILS-TTHTIERLALFDQ 349 + +DPPR G +A M ++Y+SCNP +L RD ++ + ++R + D Sbjct: 379 --AVLLDPPRDGAFEAVREMSSLGARRVVYVSCNPATLARDAGEMARQGYRLKRAGILDM 436 Query: 350 FPYTRHMECGVLL 362 FP T H+E L Sbjct: 437 FPQTAHVEAMALF 449 >gi|167039861|ref|YP_001662846.1| RNA methyltransferase [Thermoanaerobacter sp. X514] gi|300915379|ref|ZP_07132693.1| RNA methyltransferase, TrmA family [Thermoanaerobacter sp. X561] gi|307724814|ref|YP_003904565.1| TrmA family RNA methyltransferase [Thermoanaerobacter sp. X513] gi|166854101|gb|ABY92510.1| RNA methyltransferase, TrmA family [Thermoanaerobacter sp. X514] gi|300888655|gb|EFK83803.1| RNA methyltransferase, TrmA family [Thermoanaerobacter sp. X561] gi|307581875|gb|ADN55274.1| RNA methyltransferase, TrmA family [Thermoanaerobacter sp. X513] Length = 452 Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 63/236 (26%), Positives = 110/236 (46%), Gaps = 31/236 (13%) Query: 137 RLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINV 196 RL LH + K + +DY+ E L L ++ SF Q N+ Sbjct: 237 RLVGVLHTQNDSWSDAVVCEKLNVLYGKDYLIEELL----GLKFKISAFSFFQTNS---- 288 Query: 197 HMLEWVLAATKGIQGDL-----LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251 + E + + GD+ +LY G G +++A +V+ +E+ + +V +AR N Sbjct: 289 YGAEKLYETVREFAGDVSDKIVFDLYSGTGTIGIIMAPMAKKVIGIELVEEAVMSARENA 348 Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD-DATVG 310 N + N + ++ +E + D+ + VDPPRSG++ A Sbjct: 349 ELNGLKNCTFIA------GDVSKKLKEIKEMPDV---------VIVDPPRSGINPKALED 393 Query: 311 MVQAYPH-ILYISCNPDSLCRDLSILS-TTHTIERLALFDQFPYTRHMECGVLLVR 364 +++ P ++Y+SCNP+SL RDL I S + ++++ D FP+T H+EC VL+ R Sbjct: 394 IIKFNPQKVVYVSCNPESLARDLKIFSEGGYKVDKVKCVDMFPHTYHVECVVLMSR 449 >gi|309804713|ref|ZP_07698778.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners LactinV 09V1-c] gi|309808903|ref|ZP_07702784.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners LactinV 01V1-a] gi|325911406|ref|ZP_08173818.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners UPII 143-D] gi|308166105|gb|EFO68323.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners LactinV 09V1-c] gi|308167901|gb|EFO70038.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners LactinV 01V1-a] gi|325476756|gb|EGC79910.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners UPII 143-D] Length = 449 Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 52/155 (33%), Positives = 77/155 (49%), Gaps = 15/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ Y G G L +A+H +VL VEI + +V+ A+ N N +NN + ++E Sbjct: 304 VIDAYSGIGTIGLSVAKHVKKVLGVEIVRDAVKDAKKNAILNGINNAEYFEGKAEELMPQ 363 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCR 330 E + IFVDPPR GL D + V P I+YISCNP ++ R Sbjct: 364 WANE------------GLKTDVIFVDPPRKGLTDTFIKAAVATSPKKIVYISCNPATMIR 411 Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364 DL I + + + + D FP T H+EC VLL + Sbjct: 412 DLQIFQAAGYDFDCIDPVDMFPQTPHVECVVLLTK 446 >gi|15596130|ref|NP_249624.1| 23S rRNA 5-methyluridine methyltransferase [Pseudomonas aeruginosa PAO1] gi|116048856|ref|YP_792343.1| 23S rRNA 5-methyluridine methyltransferase [Pseudomonas aeruginosa UCBPP-PA14] gi|254239284|ref|ZP_04932607.1| hypothetical protein PACG_05477 [Pseudomonas aeruginosa C3719] gi|296390713|ref|ZP_06880188.1| 23S rRNA 5-methyluridine methyltransferase [Pseudomonas aeruginosa PAb1] gi|20140268|sp|Q9I525|RUMA_PSEAE RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|122257963|sp|Q02I93|RUMA_PSEAB RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|9946837|gb|AAG04322.1|AE004527_9 probable RNA methyltransferase [Pseudomonas aeruginosa PAO1] gi|115584077|gb|ABJ10092.1| probable RNA methyltransferase [Pseudomonas aeruginosa UCBPP-PA14] gi|126171215|gb|EAZ56726.1| hypothetical protein PACG_05477 [Pseudomonas aeruginosa C3719] Length = 450 Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 66/193 (34%), Positives = 91/193 (47%), Gaps = 25/193 (12%) Query: 177 TLIYRQIENSFTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD 232 TL YR F Q NA +N M L+W LA T + +L+L+CG GNFSL LAR Sbjct: 273 TLAYR--PGDFVQVNAPVNESMIRQALDW-LAPTADER--VLDLFCGLGNFSLPLARRVA 327 Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNRLKDIDIHSYR 291 RV+ VE VE A N AN + N + SK +A E+ F Sbjct: 328 RVVGVEGVAAMVERAGANALANGLGNAHFFQADLSKALAEAPWAEQGFT----------- 376 Query: 292 FKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSILS-TTHTIERLALFDQ 349 + +DPPR G +A M ++Y+SCNP +L RD ++ + ++R + D Sbjct: 377 --AVLLDPPRDGAFEAVREMSSLGARRVVYVSCNPATLARDAGEMARQGYRLKRAGILDM 434 Query: 350 FPYTRHMECGVLL 362 FP T H+E L Sbjct: 435 FPQTAHVEAMALF 447 >gi|319892940|ref|YP_004149815.1| RNA methyltransferase, TrmA family [Staphylococcus pseudintermedius HKU10-03] gi|317162636|gb|ADV06179.1| RNA methyltransferase, TrmA family [Staphylococcus pseudintermedius HKU10-03] Length = 454 Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 48/155 (30%), Positives = 78/155 (50%), Gaps = 14/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +L+ YCG G SL +A H V VE+ ++E A+ N N +NN V ++++ Sbjct: 311 VLDAYCGIGTISLFMAPHAQHVYGVEVVPEAIEDAKRNARYNQLNNTTFVAGAAEDVILK 370 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCR 330 +++ + + VDPPR G D + + A I+Y+SCNP + R Sbjct: 371 WQQD------------GIQPDVVTVDPPRKGCDATFIETLNALAPKRIVYVSCNPSTQLR 418 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 D+ +LS + ++ + D FP+T H+E LLVRK Sbjct: 419 DIEMLSAQYELKEMTPVDMFPHTTHVETVALLVRK 453 >gi|84390110|ref|ZP_00991372.1| 23S rRNA (uracil-5-)-methyltransferase [Vibrio splendidus 12B01] gi|84376764|gb|EAP93639.1| 23S rRNA (uracil-5-)-methyltransferase [Vibrio splendidus 12B01] Length = 439 Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 102/378 (26%), Positives = 158/378 (41%), Gaps = 60/378 (15%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPI-----HYRMRAEFHIWHDGDDLYHIMFD 64 Y Q+ K L +M +Q N ++ EPI YR RA ++ D + F Sbjct: 98 YASQVEHKSQSLTHLMSQYQTANTEVV--EPIVGDETGYRRRARISLFVD-KKTQQLQFG 154 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQS-------DQA 117 + K+ +I+ ++L L + L P L++ L LTS D Sbjct: 155 FRKKQSKQIENITDCAVLDPRLNV-------LLPKLKSLLNTFSNLTSLGHVELVLGDTG 207 Query: 118 IVTLIYH-RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGR 176 V ++ H + L + + I L A A Y + + ++ D E G Sbjct: 208 PVMVLRHLKPLVEKDEQALIALAKAEGATLYTMPETDKI--VRLVGDAPAYSE----TGV 261 Query: 177 TLIYRQIENSFTQPNAGINVHM----LEWVLAATKGIQGD--LLELYCGNGNFSLVLARH 230 TL + N F Q N +N M +EW+ Q D +L+L+CG GNFSL +A+ Sbjct: 262 TLPFE--PNHFIQVNQKVNQQMVAQAIEWLEP-----QADERVLDLFCGLGNFSLPIAQQ 314 Query: 231 FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY 290 V+ VE V+ A N N ++N EF QA E L Sbjct: 315 SAFVVGVEGVDEMVQQATSNATLNQLSNT--------EFYQANLEE----ELSSQPWAKE 362 Query: 291 RFKTIFVDPPR---SGLDDATVGMVQAYPHILYISCNPDSLCRDL-SILSTTHTIERLAL 346 RF I +DP R SG+ D G+ ++Y+SCNP +L RD S+ + +++L + Sbjct: 363 RFDKILLDPARAGASGIVDQISGL--GAKRVVYVSCNPATLARDSESLEKQGYQLDKLGM 420 Query: 347 FDQFPYTRHMECGVLLVR 364 D FP+T H+E L ++ Sbjct: 421 LDMFPHTSHLESMALFIK 438 >gi|313105817|ref|ZP_07792080.1| putative RNA methyltransferase [Pseudomonas aeruginosa 39016] gi|310878582|gb|EFQ37176.1| putative RNA methyltransferase [Pseudomonas aeruginosa 39016] Length = 450 Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 66/193 (34%), Positives = 91/193 (47%), Gaps = 25/193 (12%) Query: 177 TLIYRQIENSFTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD 232 TL YR F Q NA +N M L+W LA T + +L+L+CG GNFSL LAR Sbjct: 273 TLAYR--PGDFVQVNAPVNESMIRQALDW-LAPTADER--VLDLFCGLGNFSLPLARRVA 327 Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNRLKDIDIHSYR 291 RV+ VE VE A N AN + N + SK +A E+ F Sbjct: 328 RVVGVEGVAAMVERAGANALANGLGNAHFFQADLSKALAEAPWAEQGFT----------- 376 Query: 292 FKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSILS-TTHTIERLALFDQ 349 + +DPPR G +A M ++Y+SCNP +L RD ++ + ++R + D Sbjct: 377 --AVLLDPPRDGAFEAVREMSSLGARRVVYVSCNPATLARDAGEMARQGYRLKRAGILDM 434 Query: 350 FPYTRHMECGVLL 362 FP T H+E L Sbjct: 435 FPQTAHVEAMALF 447 >gi|309809377|ref|ZP_07703239.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners SPIN 2503V10-D] gi|308170288|gb|EFO72319.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners SPIN 2503V10-D] Length = 449 Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 52/155 (33%), Positives = 77/155 (49%), Gaps = 15/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ Y G G L +A+H +VL VEI + +V+ A+ N N +NN + ++E Sbjct: 304 VIDAYSGIGTIGLSVAKHVKKVLGVEIVRDAVKDAKKNAILNGINNAEYFEGKAEELMPQ 363 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCR 330 E + IFVDPPR GL D + V P I+YISCNP ++ R Sbjct: 364 WANE------------GLKTDVIFVDPPRKGLTDTFIKAAVATSPKKIVYISCNPATMIR 411 Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364 DL I + + + + D FP T H+EC VLL + Sbjct: 412 DLQIFQAAGYDFDCIDPVDMFPQTPHVECVVLLTK 446 >gi|158521596|ref|YP_001529466.1| RNA methyltransferase [Desulfococcus oleovorans Hxd3] gi|158510422|gb|ABW67389.1| RNA methyltransferase, TrmA family [Desulfococcus oleovorans Hxd3] Length = 471 Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 60/185 (32%), Positives = 90/185 (48%), Gaps = 20/185 (10%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 NSF Q N L V G+ G +++LYCG G ++ L+ V+ +EI Sbjct: 302 NSFFQTNTR-GAERLYTVAREYAGLTGSQTVVDLYCGTGTIAIWLSGAAKEVIGLEINDS 360 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302 + A N N+V+NV+ V KE L +D R + +DPPR+ Sbjct: 361 CLADAVNNCRTNNVSNVRFVAGDVKE------------TLPRLDC---RADVLVIDPPRA 405 Query: 303 GLDDATVGMV--QAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360 G+ V V A P I+Y+SCNP +L RD+++LS +T+ + D FP+T H+EC Sbjct: 406 GMHKDVVEQVLAMAPPRIVYVSCNPATLARDVAMLSEAYTVAEVQPVDMFPHTPHIECVA 465 Query: 361 LLVRK 365 L +K Sbjct: 466 RLDKK 470 >gi|284036603|ref|YP_003386533.1| RNA methyltransferase, TrmA family [Spirosoma linguale DSM 74] gi|283815896|gb|ADB37734.1| RNA methyltransferase, TrmA family [Spirosoma linguale DSM 74] Length = 476 Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 64/206 (31%), Positives = 102/206 (49%), Gaps = 20/206 (9%) Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNA--GINVHMLEWVLAATKGIQGDLLELYCGNG 221 + Y++E++ L +R SF Q NA N++ + A G Q + +LY G G Sbjct: 287 KPYIEEQM----EALTFRIGPKSFYQTNAQQAYNLYKVAREFAGLTG-QERVYDLYTGTG 341 Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281 +L +AR V+ VE + SV AR N N + N V K A+ + F Sbjct: 342 TIALFVARLAKHVVGVEYVEASVADARVNAQVNGIANTTFVAGDMK----AILTDEFFAE 397 Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDA-TVGMVQAYPH-ILYISCNPDSLCRDLSILSTTH 339 D+ + DPPR+G+D+A T +++A P I+Y+SCN + RDL+IL + Sbjct: 398 HGRPDV-------VITDPPRAGMDEAVTRQLLKAAPERIVYVSCNTATQARDLAILDEGY 450 Query: 340 TIERLALFDQFPYTRHMECGVLLVRK 365 T+ + D FP+T H+E V+L ++ Sbjct: 451 TVTGVQPVDMFPHTHHVENVVVLTKR 476 >gi|195020688|ref|XP_001985248.1| GH16956 [Drosophila grimshawi] gi|193898730|gb|EDV97596.1| GH16956 [Drosophila grimshawi] Length = 613 Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 58/195 (29%), Positives = 96/195 (49%), Gaps = 21/195 (10%) Query: 186 SFTQPN-AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 +F Q N AG NV + + A +L++ CG G +L ARH +VL VEI ++ Sbjct: 386 AFFQINTAGANVLYQQAIDLAAPSKDTTMLDICCGTGTIALAFARHCKQVLGVEIVPDAI 445 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL--KDIDIHSYRFKTIFVDPPRS 302 + A YN +AN + N K ++ +F ++M RE + + K +D+ VDPPR+ Sbjct: 446 KDAEYNASANGITNCKFFAGNADDFIKSMVREALYGQEPGKPVDL------IAVVDPPRA 499 Query: 303 GLDDATVGMVQ---AYPHILYISCNPDSLCRDLSILSTTHTIE---------RLALFDQF 350 GL + ++ ++ A ++Y+SCNP S R+ L+ + + D F Sbjct: 500 GLHNRSIAAIRSASAIKRLVYVSCNPHSAKRNFIELARPESKQYKGEPFYSKSAVAVDMF 559 Query: 351 PYTRHMECGVLLVRK 365 P+T H E +L R+ Sbjct: 560 PHTTHTELVILFERE 574 >gi|118443042|ref|YP_877382.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium novyi NT] gi|118133498|gb|ABK60542.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium novyi NT] Length = 472 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 49/156 (31%), Positives = 78/156 (50%), Gaps = 15/156 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + + YCG G SL L+++ +V VEI ++E A+ N N+V+N + + S+E Sbjct: 329 VFDAYCGTGTISLFLSKNAKKVYGVEIVDAAIENAKINAKENNVDNAEFIVGKSEEVIPN 388 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCR 330 + + + + VDPPR G D A + + I+Y+SC+P +L R Sbjct: 389 LINQ------------GIKADVVVVDPPRKGCDKALLDAIGNMKPDRIVYVSCDPGTLAR 436 Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVRK 365 DL+IL + + + D FP T H+EC V L RK Sbjct: 437 DLAILGELGYATKEVQPVDMFPQTGHVECVVKLERK 472 >gi|225848202|ref|YP_002728365.1| 23S rRNA (uracil-5-)-methyltransferase [Sulfurihydrogenibium azorense Az-Fu1] gi|225643068|gb|ACN98118.1| 23S rRNA (uracil-5-)-methyltransferase [Sulfurihydrogenibium azorense Az-Fu1] Length = 420 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 90/378 (23%), Positives = 174/378 (46%), Gaps = 67/378 (17%) Query: 10 YEQQLAEKVDRLRQMML---AFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66 YE+Q+ K + L+ +L +P +++ S+P +YR++ +F DG + + Q Sbjct: 82 YEKQIEIKKEILKDQLLRIGKVDLPIEKVYPSQPFNYRIKVQFKF--DGKNFG--FYRQN 137 Query: 67 TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLF-------QIDYLTSQSDQAIV 119 + + + IDY L+ E I + PL + LF Q+ ++ +Q ++ Sbjct: 138 SNQVIDIDYCY--------LLKEDFNQI-IHPLKKF-LFKYALSPSQVIVFSNSKNQKLI 187 Query: 120 TLIYHRLLDDAWRECAIRL-RDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTL 178 ++ A I + +D + I+ IG +K K R + G + Sbjct: 188 KFVFPDNSQIANIIPKIEIYKDEIDE---NIKGIGFYDKKK----------RQLLLGEYV 234 Query: 179 IYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQG--DLLELYCGNGNFSLVLA 228 I+ ++N SF Q N ++++ V+ K +G ++ YCG G FS+ LA Sbjct: 235 IFETVDNYKYRVSMDSFFQVNIYQIKNLIDLVVQEVKD-KGYKRAVDFYCGVGTFSVPLA 293 Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288 + VL +E + +V+ A+ N+ N++ N+K ++ ++ + ++ ++F Sbjct: 294 NYVREVLGIESNEEAVKDAKTNVRHNNLKNLKFLKAKTE---KGLKYAKDF--------- 341 Query: 289 SYRFKTIFVDPPRSGLDDAT---VGMVQAYPHILYISCNPDSLCRDLSILST-THTIERL 344 + + + DPPRSGL+ + +++ I+YISCNP +L RDL ++ Sbjct: 342 --KPEVVVFDPPRSGLNKTIIREISKIESIQKIIYISCNPSTLARDLKDFKEYGFNPLKV 399 Query: 345 ALFDQFPYTRHMECGVLL 362 ++ D FP T H+E V+L Sbjct: 400 SMVDMFPQTHHIESVVVL 417 >gi|145634669|ref|ZP_01790378.1| 23S rRNA (uracil-5-)-methyltransferase [Haemophilus influenzae PittAA] gi|145268214|gb|EDK08209.1| 23S rRNA (uracil-5-)-methyltransferase [Haemophilus influenzae PittAA] Length = 204 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 59/183 (32%), Positives = 88/183 (48%), Gaps = 17/183 (9%) Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 F Q N +N M+ L + Q D +L+L+CG GNF+L LA+ + +E V+ Sbjct: 35 FIQVNRALNERMVNTALDWLELSQQDCVLDLFCGMGNFTLPLAKRVKSAVGIEGVFEMVQ 94 Query: 246 AARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 A N A N + N++ + + F + + FN+ I +DPPRSG Sbjct: 95 KAAQNAARNQIKNIEFFQADLDQSFVEQPWANQSFNK-------------ILLDPPRSGA 141 Query: 305 DDATVGMVQ-AYPHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLL 362 A + + ILY+SCNP +L RD IL + IE+ A+ D FP+T H+E L Sbjct: 142 AFALNALCELKAEKILYVSCNPATLVRDAEILCDFGYKIEKSAVIDMFPHTGHLESITLF 201 Query: 363 VRK 365 K Sbjct: 202 TTK 204 >gi|163846809|ref|YP_001634853.1| RNA methyltransferase [Chloroflexus aurantiacus J-10-fl] gi|222524630|ref|YP_002569101.1| RNA methyltransferase, TrmA family [Chloroflexus sp. Y-400-fl] gi|163668098|gb|ABY34464.1| RNA methyltransferase, TrmA family [Chloroflexus aurantiacus J-10-fl] gi|222448509|gb|ACM52775.1| RNA methyltransferase, TrmA family [Chloroflexus sp. Y-400-fl] Length = 416 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 59/183 (32%), Positives = 91/183 (49%), Gaps = 18/183 (9%) Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAV 237 +I+R SF Q N M+ V A G LL+ Y G G+F+L LAR +D V+AV Sbjct: 238 VIFRLSLGSFFQVNHAQAERMVAVVRDALAPHGGRLLDAYSGVGSFALPLARCYDEVIAV 297 Query: 238 EIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFV 297 E +P+VE R + N + NV+ + +++ + S F + + Sbjct: 298 EAYQPAVEDGRQSAIDNQITNVQFINGAAEHTVAHL---------------SGPFHAVIL 342 Query: 298 DPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTR 354 DPPR G A + + A+ P I+YISC+P + RDL+ +L+ + I + D FP T Sbjct: 343 DPPRRGCHPALIEAIIAHAPPQIVYISCHPGLIGRDLAPLLAAGYQITFVQPVDLFPQTP 402 Query: 355 HME 357 H+E Sbjct: 403 HIE 405 >gi|332532630|ref|ZP_08408506.1| 23S rRNA (uracil-5)-methyltransferase [Pseudoalteromonas haloplanktis ANT/505] gi|332037846|gb|EGI74295.1| 23S rRNA (uracil-5)-methyltransferase [Pseudoalteromonas haloplanktis ANT/505] Length = 441 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 102/385 (26%), Positives = 175/385 (45%), Gaps = 67/385 (17%) Query: 9 QYEQQLAEKVDRLRQMMLAF--------QVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60 + QQ+ EK + Q+ F Q P L S+P+HYR A + Sbjct: 96 EVSQQVVEKQTAVTQLFSKFAKLNSLNWQTPLL----SKPVHYRRSARIAV--------- 142 Query: 61 IMFDQQTKERMRIDYFMPGS---LLIN--ALMIEMMATI--RLEPLLR--AKLFQIDYLT 111 MFD+ K +MR+ Y GS + IN A++ E+ + + L+ L I +L Sbjct: 143 -MFDKAAK-KMRVGYRASGSKNIVSINKCAVLDEVFTDVFTLFDDLINQHKALHSISHLQ 200 Query: 112 -SQSDQAIVTLIYH-RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKI-----CLDR 164 QSD+ +I H + ++D + + + Q +++ ++ I + Sbjct: 201 LCQSDKQNFVVIRHTKAINDDTKALVEHI-----TKSQQFEIVWQSESDAIEHSHLAMPF 255 Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGN 222 Y+ E L + +F Q NA +N ML+ A ++GD LL+L+CG GN Sbjct: 256 YYLKEF------DLKFEFGLGNFIQVNAQVNEAMLKQA-ANWLDLKGDENLLDLFCGIGN 308 Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282 FSLVLA+ V+ VE +V A N N + N + + TQ+++ F+ Sbjct: 309 FSLVLAKQAKSVIGVEGVTSAVAMAAQNAQTNSITN---AQFHCFDLTQSIQSAPWFS-- 363 Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDLSILS-TTHT 340 K++D+ + +DP R+G + ++ + ILY+SC+P +L RD +I+S Sbjct: 364 KNLDV-------LVLDPSRTGAMAVLEQLPLKQFKTILYVSCDPVTLARDSAIISQAGFD 416 Query: 341 IERLALFDQFPYTRHMECGVLLVRK 365 + ++ L + FP+T H+E L R+ Sbjct: 417 LNKIGLMNMFPHTGHIETMALFQRR 441 >gi|261418686|ref|YP_003252368.1| RNA methyltransferase, TrmA family [Geobacillus sp. Y412MC61] gi|319765501|ref|YP_004131002.1| RNA methyltransferase, TrmA family [Geobacillus sp. Y412MC52] gi|261375143|gb|ACX77886.1| RNA methyltransferase, TrmA family [Geobacillus sp. Y412MC61] gi|317110367|gb|ADU92859.1| RNA methyltransferase, TrmA family [Geobacillus sp. Y412MC52] Length = 462 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 99/387 (25%), Positives = 165/387 (42%), Gaps = 55/387 (14%) Query: 10 YEQQLAEKVDRLRQMMLAFQV-PNL---QIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ 65 YE QL K + ++ ++ P + I P HYR + EF +G H + Sbjct: 97 YEGQLRHKTEHVKTLLKEHGFDPGVVRDTIGMEHPWHYRNKMEFTFSPEGLLGLH----E 152 Query: 66 QTKERMRIDY---FMPGSLLINALMIEMMATIR-----------LEPLLRAKLFQIDYLT 111 Q R I + G ++ A M E+ R E LLR + + + T Sbjct: 153 QGNFRQVISLETCLIAGEKIVKAAM-EVARWARDHQLPGYHKDTHEGLLRHVMVRESFAT 211 Query: 112 SQSDQAI-VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDER 170 + A+ T L +A + R+ AL K + L RA DR ++ Sbjct: 212 GEVMVALFATEAPEGELKEAAADLTERITKALPEVKSLLWLENRA-----WADRTQAEQT 266 Query: 171 LTVAGRTLIY--------RQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNG 221 +AGR IY R ++F Q N ++E L +++L+CG G Sbjct: 267 HVLAGRDFIYDALCGFRYRLWFDTFFQTNPVQAAKLVELALEMGEPQPHEKMIDLFCGVG 326 Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281 FSL A+ + +EI + S+E+A+ N N ++N + R+ R Sbjct: 327 TFSLPFAKRVKELAGIEIVETSIESAKRNAKDNGIDNTYFL-------------ARDARR 373 Query: 282 LKDIDIHSY-RFKTIFVDPPRSGLDDATVGMV-QAYPH-ILYISCNPDSLCRDLS-ILST 337 D + + R + + +DPPRSG + + +A P ++Y+SCNP++ D++ ++ Sbjct: 374 GIDEVLEQFGRPELLLLDPPRSGAGGKVMRKIGRARPERVVYVSCNPETFASDITELVPF 433 Query: 338 THTIERLALFDQFPYTRHMECGVLLVR 364 +T+E + D FP+T H+EC LLVR Sbjct: 434 GYTLETVQPVDMFPHTAHVECCALLVR 460 >gi|317491024|ref|ZP_07949460.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterobacteriaceae bacterium 9_2_54FAA] gi|316920571|gb|EFV41894.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterobacteriaceae bacterium 9_2_54FAA] Length = 438 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 79/264 (29%), Positives = 120/264 (45%), Gaps = 42/264 (15%) Query: 113 QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANK-TKICLDRDY--VDE 169 Q+D V ++ H L+ + RL D + L G + K+C + + VDE Sbjct: 202 QADNGCVLVLRH--LEALKEQDLARLHDFGAQHDVMVYLQGNEGELVKLCGESPFYQVDE 259 Query: 170 -RLTVAGRTLIYRQIENSFTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFS 224 RL + R F Q N IN M LEW+ + +L+L+CG GNF+ Sbjct: 260 LRLFFSPR---------DFIQVNDAINQQMVAQALEWLDVQSTD---RVLDLFCGMGNFT 307 Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284 L LA+ +V+ VE VE YN N +NNV EF Q N D Sbjct: 308 LPLAKRAKQVVGVEGVATLVENGLYNAHINALNNV--------EFFQ-------HNLEDD 352 Query: 285 IDIHSYR---FKTIFVDPPRSGLDDATVGMVQAYPH-ILYISCNPDSLCRDLSIL-STTH 339 + + F+ + +DP R+G +V+ P ++Y+SCNP +L RD +L + + Sbjct: 353 VTRQPWAKLGFEKVLLDPARAGAAGVMTHIVKLAPEKVVYVSCNPTTLARDSKVLIAAGY 412 Query: 340 TIERLALFDQFPYTRHMECGVLLV 363 +ER+ + D FP+T H+E L V Sbjct: 413 RMERVRMLDMFPHTGHLESMALFV 436 >gi|143811454|sp|Q5E320|RUMA_VIBF1 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase Length = 438 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 95/362 (26%), Positives = 157/362 (43%), Gaps = 26/362 (7%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPN---LQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ 65 Q+E+Q+ K ++L+++M V +Q E + YR RA + + + F Sbjct: 97 QHEEQIVAKNEKLQELMKKQGVSQGEMVQPIMGEELSYRRRARISLMLN-KQTNQLDFGF 155 Query: 66 QTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHR 125 + K+ I +L+ L + + L L+ K Q+D V LI H Sbjct: 156 RKKQSKAIVNVRHCPVLVQELDQHLESLFTLLNQLKGKKHLGHVELVQADNGSVLLIRH- 214 Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIEN 185 + D + L + R + L+ A+ L+ +E + T IY ++ Sbjct: 215 -VADFNEKDQQALVNYCEERNLILYLMPEAD----VLNHVRGEEPFYLIDGTKIYFTPKD 269 Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 F Q N +N M+E L+ + D +L+L+CG GNFSL LA+ V+ +E V Sbjct: 270 -FIQVNRNVNEQMVEQALSWLDLNENDSVLDLFCGLGNFSLPLAKKVKTVVGIEGVDEMV 328 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 + A+ N N ++NV F QA E + + S +F I +DP R+G Sbjct: 329 QRAKLNAERNQLSNV--------SFYQANLEE----EVSEQVWASTKFTKILLDPARAGA 376 Query: 305 DDATVGMVQAYPH-ILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLL 362 + + P ++Y+SCNP +L RD +L + RL + D FP+T H+E L Sbjct: 377 AGVMETVAKLKPQTVVYVSCNPATLARDSQLLIQHGFKLTRLGMLDMFPHTGHLESMALF 436 Query: 363 VR 364 R Sbjct: 437 ER 438 >gi|119944302|ref|YP_941982.1| RNA methyltransferase, TrmA family protein [Psychromonas ingrahamii 37] gi|143581743|sp|A1SSB8|RUMA_PSYIN RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|119862906|gb|ABM02383.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Psychromonas ingrahamii 37] Length = 444 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 58/185 (31%), Positives = 92/185 (49%), Gaps = 24/185 (12%) Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 F Q N+ IN M ++W LA K +L+L+CG GNF+L +AR + V+ +E + Sbjct: 275 FLQVNSDINKKMVSQAMQW-LALEKN--DSVLDLFCGLGNFTLPIARQVESVVGIEGVQQ 331 Query: 243 SVEAARYNIAANHVNNVKIVR--MSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300 V+ A N N++ N + + +S + + + FN+ + +DP Sbjct: 332 MVDRATANAQLNNLQNARFYQADLSGENLIEQEWANQNFNK-------------VLLDPA 378 Query: 301 RSGLDDATVGMVQAYP-HILYISCNPDSLCRDLSI-LSTTHTIERLALFDQFPYTRHMEC 358 R+G D + Q P HILY+SC+P +L RD + L + +++L L D FP T HME Sbjct: 379 RAGALDCLAFIAQKKPSHILYVSCDPLTLARDSQVLLDKGYKLDKLGLLDMFPQTAHMES 438 Query: 359 GVLLV 363 L Sbjct: 439 MALFT 443 >gi|269140060|ref|YP_003296761.1| 23S rRNA 5-methyluridine methyltransferase [Edwardsiella tarda EIB202] gi|267985721|gb|ACY85550.1| 23S rRNA 5-methyluridine methyltransferase [Edwardsiella tarda EIB202] gi|304559888|gb|ADM42552.1| 23S rRNA (Uracil-5-) -methyltransferase RumA [Edwardsiella tarda FL6-60] Length = 420 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 58/178 (32%), Positives = 90/178 (50%), Gaps = 23/178 (12%) Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 F Q NA +N M+E LA ++ D +L+L+CG GNF+L LAR RV+ VE V Sbjct: 249 FIQVNAAVNAQMVEQALAWLD-VRADERVLDLFCGMGNFTLPLARRAQRVVGVEGVPELV 307 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDPPR 301 A+ N N ++NV+ + +E D+ ++ F I +DP R Sbjct: 308 ATAQNNARNNGLSNVEFFHQNLEE---------------DVTRQAWAAQGFDKILLDPAR 352 Query: 302 SGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHME 357 +G +V P ++Y+SCNP +L RD ++L + + RL + D FP+T H+E Sbjct: 353 AGAPGVMQHIVCLAPRRVVYVSCNPTTLARDSKTLLQGGYRLTRLCMLDMFPHTGHLE 410 >gi|256839936|ref|ZP_05545445.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Parabacteroides sp. D13] gi|256738866|gb|EEU52191.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Parabacteroides sp. D13] Length = 470 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 67/218 (30%), Positives = 105/218 (48%), Gaps = 26/218 (11%) Query: 161 CLDRDYVDERLTVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGD 212 C D E L G+ I ++E SF Q N+ + L V G+ G+ Sbjct: 266 CNDTITDQEVLVFKGKDHIIEEMEGLQFKVGPKSFYQTNSE-QAYNLYKVAREFAGLTGN 324 Query: 213 --LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE-F 269 + +LY G G + ++R +V+ +E ++E A+ N A NH+ N K+ Sbjct: 325 EMVYDLYTGTGTIANFVSRQAKKVIGIEYVPEAIEDAKVNSALNHIENTLFYAGDMKDIL 384 Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL-DDATVGMVQAYPH-ILYISCNPDS 327 TQ I+ H R I DPPR+G+ DD ++ A P I+Y+SCNP + Sbjct: 385 TQDF-----------INQHG-RPDVIITDPPRAGMHDDVINTILFAEPERIVYVSCNPAT 432 Query: 328 LCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 RDLS+LS ++++++ D FP+T H+E VLL +K Sbjct: 433 QARDLSLLSVKYSVKKVRPVDMFPHTHHVENVVLLEKK 470 >gi|282600209|ref|ZP_05973425.2| 23S rRNA (uracil-5-)-methyltransferase RumA [Providencia rustigianii DSM 4541] gi|282566270|gb|EFB71805.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Providencia rustigianii DSM 4541] Length = 427 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 58/188 (30%), Positives = 89/188 (47%), Gaps = 19/188 (10%) Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 +F Q N IN M+ +A D +L+L+CG GNF+L +AR V+ VE + V Sbjct: 254 NFIQVNGEINQQMVAQAIAWLDISPEDRVLDLFCGMGNFTLPIARIAKSVVGVEGVENLV 313 Query: 245 EAARYNIAANHVNNVKIVRMSSKE--FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302 AR N N +NN + +E TQ ++ F + +DP R+ Sbjct: 314 SQARSNAQLNSINNASFYNANLEEQIHTQPWAQQ--------------GFNKVLLDPARA 359 Query: 303 GLDDATVGMVQAYPH-ILYISCNPDSLCRDLSI-LSTTHTIERLALFDQFPYTRHMECGV 360 G + + P I+Y+SCNP +L RD + L + + +L + D FP+T H+E Sbjct: 360 GAAGVMEHLTKLMPEKIVYVSCNPTTLARDSKVLLEGGYQLHQLRMLDMFPHTSHLESMA 419 Query: 361 LLVRKPSG 368 L +R P G Sbjct: 420 LFIRSPEG 427 >gi|150007675|ref|YP_001302418.1| RNA methyltransferase [Parabacteroides distasonis ATCC 8503] gi|255013620|ref|ZP_05285746.1| RNA methyltransferase [Bacteroides sp. 2_1_7] gi|262381816|ref|ZP_06074954.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides sp. 2_1_33B] gi|298375621|ref|ZP_06985578.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides sp. 3_1_19] gi|301310290|ref|ZP_07216229.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides sp. 20_3] gi|149936099|gb|ABR42796.1| RNA methyltransferase [Parabacteroides distasonis ATCC 8503] gi|262296993|gb|EEY84923.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides sp. 2_1_33B] gi|298268121|gb|EFI09777.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides sp. 3_1_19] gi|300831864|gb|EFK62495.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides sp. 20_3] Length = 470 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 67/218 (30%), Positives = 105/218 (48%), Gaps = 26/218 (11%) Query: 161 CLDRDYVDERLTVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGD 212 C D E L G+ I ++E SF Q N+ + L V G+ G+ Sbjct: 266 CNDTITDQEVLVFKGKDHIIEEMEGLQFKVGPKSFYQTNSE-QAYNLYKVAREFAGLTGN 324 Query: 213 --LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE-F 269 + +LY G G + ++R +V+ +E ++E A+ N A NH+ N K+ Sbjct: 325 EMVYDLYTGTGTIANFVSRQAKKVIGIEYVPEAIEDAKVNSALNHIENTLFYAGDMKDIL 384 Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL-DDATVGMVQAYPH-ILYISCNPDS 327 TQ I+ H R I DPPR+G+ DD ++ A P I+Y+SCNP + Sbjct: 385 TQDF-----------INQHG-RPDVIITDPPRAGMHDDVINTILFAEPERIVYVSCNPAT 432 Query: 328 LCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 RDLS+LS ++++++ D FP+T H+E VLL +K Sbjct: 433 QARDLSLLSVKYSVKKVRPVDMFPHTHHVENVVLLEKK 470 >gi|146312878|ref|YP_001177952.1| 23S rRNA 5-methyluridine methyltransferase [Enterobacter sp. 638] gi|226725379|sp|A4WDX1|RUMA_ENT38 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|145319754|gb|ABP61901.1| 23S rRNA m(5)U-1939 methyltransferase [Enterobacter sp. 638] Length = 431 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 60/185 (32%), Positives = 95/185 (51%), Gaps = 27/185 (14%) Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIA 240 F Q N G+N M +EW+ +Q D +L+L+CG GNF+L LA+ V+ VE Sbjct: 263 FIQVNDGVNQQMVAKAIEWL-----DVQPDDRVLDLFCGMGNFTLPLAQRAASVVGVEGV 317 Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKE-FTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299 VE + N N ++NV + +E TQ + F++ + +DP Sbjct: 318 NALVEKGQQNAHHNALDNVTFFHENLEEDVTQQPWAQHGFDK-------------VLLDP 364 Query: 300 PRSGLDDATVGMVQAYPH-ILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHME 357 R+G +++ P ++Y+SCNP +L RD ++LS + I+RLA+ D FP+T H+E Sbjct: 365 ARAGAPGVMQHIIKLAPKRVVYVSCNPATLARDSEALLSAGYQIQRLAMLDMFPHTGHLE 424 Query: 358 CGVLL 362 VL Sbjct: 425 SMVLF 429 >gi|310766625|gb|ADP11575.1| 23S rRNA 5-methyluridine methyltransferase [Erwinia sp. Ejp617] Length = 438 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 59/185 (31%), Positives = 90/185 (48%), Gaps = 21/185 (11%) Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 F Q N +N M+ LA D +L+LYCG GNF+L + + V+ VE V Sbjct: 269 FIQVNDEVNQQMVARALAWLDLQPEDRVLDLYCGMGNFTLPMGKFAKNVVGVEGVAALVA 328 Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDPPRS 302 A YN N++NNV + + +E D+ + F + +DP R+ Sbjct: 329 KAGYNAELNNLNNVTYWQHNLEE---------------DVSRQPWAAQGFNKVLLDPARA 373 Query: 303 GLDDATVGMVQAYPH-ILYISCNPDSLCRDLSILSTT-HTIERLALFDQFPYTRHMECGV 360 G + + P ++Y+SCNP +L RD IL T+ + +ER+ + D FP+T H+E V Sbjct: 374 GAAGVMAHITKLAPQRVVYVSCNPTTLARDSEILLTSGYQLERVTMLDMFPHTGHLESMV 433 Query: 361 LLVRK 365 L RK Sbjct: 434 LFSRK 438 >gi|222151872|ref|YP_002561032.1| RNA methyltransferase, TrmA family protein homolog [Macrococcus caseolyticus JCSC5402] gi|222121001|dbj|BAH18336.1| RNA methyltransferase, TrmA family protein homolog [Macrococcus caseolyticus JCSC5402] Length = 454 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 62/192 (32%), Positives = 90/192 (46%), Gaps = 18/192 (9%) Query: 178 LIYRQIENSFTQPNA--GINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVL 235 L +R NSF Q N ++ L A KG + +L+ YCG G SL LA+H ++V Sbjct: 276 LEFRVSPNSFFQVNTPQAETLYKLALEAANLKGHE-TVLDAYCGIGTISLALAQHAEQVY 334 Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295 A+EI S++ A+ N N ++NV S+ E + F Sbjct: 335 AMEIVHESIKMAKQNAKMNGIDNVHFETGSADEILPKWSEQ------------GVNFDVA 382 Query: 296 FVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPY 352 VDPPR GLDD + + Q+ I+Y+SCNP + RD + +E + D FP Sbjct: 383 VVDPPRKGLDDDFIQTLINQSPKTIVYVSCNPGTCARDCRKFADAGYKLEYVKPVDLFPQ 442 Query: 353 TRHMECGVLLVR 364 T H+EC V L + Sbjct: 443 TPHVECVVKLTK 454 >gi|145631421|ref|ZP_01787191.1| molybdenum cofactor biosynthesis protein [Haemophilus influenzae R3021] gi|144982958|gb|EDJ90467.1| molybdenum cofactor biosynthesis protein [Haemophilus influenzae R3021] Length = 438 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 59/183 (32%), Positives = 88/183 (48%), Gaps = 17/183 (9%) Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 F Q N +N M+ L + Q D +L+L+CG GNF+L LA+ + +E V+ Sbjct: 269 FIQVNRALNEPMVNTALDWLELSQQDCVLDLFCGMGNFTLPLAKRVKSAVGIEGVFEMVQ 328 Query: 246 AARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 A N A N + N++ + + F + + FN+ I +DPPRSG Sbjct: 329 KAAQNAARNQIKNIEFFQADLDQSFVEQPWANQSFNK-------------ILLDPPRSGA 375 Query: 305 DDATVGMVQ-AYPHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLL 362 A + + ILY+SCNP +L RD IL + IE+ A+ D FP+T H+E L Sbjct: 376 AFALNALCELKAEKILYVSCNPATLVRDAEILCDFGYKIEKSAVIDMFPHTGHLESITLF 435 Query: 363 VRK 365 K Sbjct: 436 TTK 438 >gi|47169345|pdb|1UWV|A Chain A, Crystal Structure Of Ruma, The Iron-Sulfur Cluster Containing E. Coli 23s Ribosomal Rna 5-Methyluridine Methyltransferase Length = 433 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 60/187 (32%), Positives = 88/187 (47%), Gaps = 27/187 (14%) Query: 187 FTQPNAGIN----VHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 F Q NAG+N LEW+ + +L+L+CG GNF+L LA V+ VE Sbjct: 263 FIQVNAGVNQKXVARALEWLDVQP---EDRVLDLFCGXGNFTLPLATQAASVVGVEGVPA 319 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDP 299 VE + N N + NV + +E D+ + F + +DP Sbjct: 320 LVEKGQQNARLNGLQNVTFYHENLEE---------------DVTKQPWAKNGFDKVLLDP 364 Query: 300 PRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHME 357 R+G +++ P I+Y+SCNP +L RD ++L +TI RLA D FP+T H+E Sbjct: 365 ARAGAAGVXQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAXLDXFPHTGHLE 424 Query: 358 CGVLLVR 364 VL R Sbjct: 425 SXVLFSR 431 >gi|59712688|ref|YP_205464.1| 23S rRNA 5-methyluridine methyltransferase [Vibrio fischeri ES114] gi|59480789|gb|AAW86576.1| 23S rRNA (uracil-5)-methyltransferase [Vibrio fischeri ES114] Length = 449 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 95/362 (26%), Positives = 157/362 (43%), Gaps = 26/362 (7%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPN---LQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ 65 Q+E+Q+ K ++L+++M V +Q E + YR RA + + + F Sbjct: 108 QHEEQIVAKNEKLQELMKKQGVSQGEMVQPIMGEELSYRRRARISLMLN-KQTNQLDFGF 166 Query: 66 QTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHR 125 + K+ I +L+ L + + L L+ K Q+D V LI H Sbjct: 167 RKKQSKAIVNVRHCPVLVQELDQHLESLFTLLNQLKGKKHLGHVELVQADNGSVLLIRH- 225 Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIEN 185 + D + L + R + L+ A+ L+ +E + T IY ++ Sbjct: 226 -VADFNEKDQQALVNYCEERNLILYLMPEAD----VLNHVRGEEPFYLIDGTKIYFTPKD 280 Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 F Q N +N M+E L+ + D +L+L+CG GNFSL LA+ V+ +E V Sbjct: 281 -FIQVNRNVNEQMVEQALSWLDLNENDSVLDLFCGLGNFSLPLAKKVKTVVGIEGVDEMV 339 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 + A+ N N ++NV F QA E + + S +F I +DP R+G Sbjct: 340 QRAKLNAERNQLSNV--------SFYQANLEE----EVSEQVWASTKFTKILLDPARAGA 387 Query: 305 DDATVGMVQAYPH-ILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLL 362 + + P ++Y+SCNP +L RD +L + RL + D FP+T H+E L Sbjct: 388 AGVMETVAKLKPQTVVYVSCNPATLARDSQLLIQHGFKLTRLGMLDMFPHTGHLESMALF 447 Query: 363 VR 364 R Sbjct: 448 ER 449 >gi|256822067|ref|YP_003146030.1| TrmA family RNA methyltransferase [Kangiella koreensis DSM 16069] gi|256795606|gb|ACV26262.1| RNA methyltransferase, TrmA family [Kangiella koreensis DSM 16069] Length = 448 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 61/205 (29%), Positives = 101/205 (49%), Gaps = 19/205 (9%) Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGN 222 RD++ RL +++ ++ FTQ N IN M++ + + D +L+L+CG GN Sbjct: 258 RDWLSYRLEDYDVEMLFHPMD--FTQVNDSINSKMVKRAIEWLEPKADDRILDLFCGLGN 315 Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNR 281 F++ LA V+ VE ++ V+ + N N ++NV+ + +FTQ ++ FN+ Sbjct: 316 FTIPLATQVQNVVGVEGSEAMVKRGQMNAKHNGLSNVEFYATNLQDDFTQEEWAQQGFNK 375 Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH-ILYISCNPDSLCRDLSIL-STTH 339 I +DPPRSG D + + P I+Y+SCNP +L RD L + Sbjct: 376 -------------ILIDPPRSGALDVVQNITRFNPERIVYVSCNPATLARDAGELKEKGY 422 Query: 340 TIERLALFDQFPYTRHMECGVLLVR 364 + + + D FP+T H E L R Sbjct: 423 KLVKAGVMDMFPHTSHTESIALFER 447 >gi|16272285|ref|NP_438497.1| 23S rRNA 5-methyluridine methyltransferase [Haemophilus influenzae Rd KW20] gi|260581201|ref|ZP_05849020.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Haemophilus influenzae RdAW] gi|1723812|sp|P44643|RUMA_HAEIN RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|1573302|gb|AAC21995.1| RNA methyltransferase, putative [Haemophilus influenzae Rd KW20] gi|260092126|gb|EEW76070.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Haemophilus influenzae RdAW] Length = 438 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 58/183 (31%), Positives = 88/183 (48%), Gaps = 17/183 (9%) Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 F Q N+ +N M+ L + Q D +L+L+CG GNF+L LA+ + +E V+ Sbjct: 269 FIQVNSALNEPMVNTALDWLELSQQDCVLDLFCGMGNFTLPLAKRVKSAVGIEGVFEMVQ 328 Query: 246 AARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 A N N + N++ + + F + + FN+ I +DPPRSG Sbjct: 329 KAAQNAERNQIKNIEFFQADLDQSFVEQPWANQSFNK-------------ILLDPPRSGA 375 Query: 305 DDATVGMVQ-AYPHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLL 362 A + + ILY+SCNP +L RD IL + IE+ A+ D FP+T H+E L Sbjct: 376 AFALNALCELKAEKILYVSCNPATLVRDAEILCNFGYKIEKSAVIDMFPHTGHLESITLF 435 Query: 363 VRK 365 K Sbjct: 436 TTK 438 >gi|269792573|ref|YP_003317477.1| RNA methyltransferase, TrmA family [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100208|gb|ACZ19195.1| RNA methyltransferase, TrmA family [Thermanaerovibrio acidaminovorans DSM 6589] Length = 457 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 54/156 (34%), Positives = 84/156 (53%), Gaps = 18/156 (11%) Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271 D+LELY G G+ + ++A RV+AVE +VE R N+ N ++ V + ++++ Sbjct: 314 DVLELYSGVGSLTGMIAAGGRRVVAVEEWPSAVEGLRENLQVNGIHGVTPLLGAAEDV-- 371 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQA-YPHILYISCNPDSLC 329 L D+ F+ + +DPPR G + MV A PH++Y+SCNP +L Sbjct: 372 ----------LGDL---GGDFQAVVLDPPRGGCHPEVIRAMVDAAVPHVIYVSCNPATLA 418 Query: 330 RDLSILS-TTHTIERLALFDQFPYTRHMECGVLLVR 364 RDL +LS + + R+ FD FP T H+EC L+ R Sbjct: 419 RDLMLLSQGGYVLRRVRPFDMFPQTCHVECVTLMSR 454 >gi|50086080|ref|YP_047590.1| 23S rRNA 5-methyluridine methyltransferase [Acinetobacter sp. ADP1] gi|90126208|sp|Q6F847|RUMA_ACIAD RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|49532056|emb|CAG69768.1| 23S rRNA (Uracil-5-)-methyltransferase(23S rRNA(M-5-U1939)-methyltransferase) [Acinetobacter sp. ADP1] Length = 463 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 72/233 (30%), Positives = 117/233 (50%), Gaps = 28/233 (12%) Query: 137 RLRDALHARKYQIQLIGRANKTKICLDRDYVDERL--TVAGRTLIYRQIENSFTQPNAGI 194 +L D + +Q+ L + + + +DR + RL V L + FTQ NA + Sbjct: 234 QLCDYAQHKNWQLYLQAKGSDSLKRVDRSGAEMRLHYAVPAFNLNFAFSPLDFTQVNATV 293 Query: 195 NVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLAR---HFDRVLAVEIAKPSVEAARYN 250 N ML+ K +G+ +L+L+CG GNFSL LAR RV+ VE ++ V+ A N Sbjct: 294 NQQMLKLACDLLKLQKGEHVLDLFCGLGNFSLPLARCVGDTGRVVGVEGSEEMVQRAFEN 353 Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDPPRSGLDDA 307 A N ++NV+ S++ T KD HS+ F + +DPPRSG + Sbjct: 354 AAQNALHNVEFY---SQDLT------------KDFSHHSWANQGFDALLIDPPRSGAFEI 398 Query: 308 T--VGMVQAYPHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHME 357 + +A I+Y+SCNP +L RD +L+ + ++++ + D F +T H+E Sbjct: 399 MHYIANFEA-KRIVYVSCNPATLARDAGVLAQHGYQLKKVGVMDMFTHTEHVE 450 >gi|117618818|ref|YP_855360.1| 23S rRNA 5-methyluridine methyltransferase [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|143580479|sp|A0KGG9|RUMA_AERHH RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|117560225|gb|ABK37173.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 440 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 59/184 (32%), Positives = 87/184 (47%), Gaps = 15/184 (8%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 F Q NA +N M+E L+ + + D +L+L+CG GNF+L LAR V+ VE Sbjct: 269 GDFIQVNAPVNQRMVEQALSWLEAGKDDKVLDLFCGIGNFTLPLARQAREVVGVEGELAM 328 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 V A N N +NN + + M RE F + +DP R G Sbjct: 329 VARAEENARRNGINNARFYKADLGGDIAGMSWARE------------GFDLVLLDPARPG 376 Query: 304 LDDATVGMVQAYP-HILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVL 361 + +V+ P ++Y+SCNP +L RD +L + + RL + D FP+T H+E L Sbjct: 377 AFEVMEHVVKLSPRRVVYVSCNPVTLARDSQVLVKGGYRLVRLGMLDMFPHTGHLESMAL 436 Query: 362 LVRK 365 RK Sbjct: 437 FERK 440 >gi|254172832|ref|ZP_04879506.1| 23S rRNA (uracil-5-)-methyltransferase [Thermococcus sp. AM4] gi|214032988|gb|EEB73816.1| 23S rRNA (uracil-5-)-methyltransferase [Thermococcus sp. AM4] Length = 418 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 64/184 (34%), Positives = 89/184 (48%), Gaps = 24/184 (13%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSF Q N+ V +L V G + +L+LY G G F + LA+ RV +EI +V Sbjct: 256 NSFFQTNSYGAVELLREVAKRVDGER--VLDLYSGVGTFGVYLAKRGFRVEGIEINPFAV 313 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR-FKTIFVDPPRSG 303 + A N N VN F D D+ S R + T+ VDPPR+G Sbjct: 314 KMANRNAELNGVNA-------------------SFRVGADRDVESLRAYDTVIVDPPRAG 354 Query: 304 LDDATVG-MVQAYP-HILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVL 361 L V +VQ P ++Y+SCNP +L RDL L +T+ + D FP+T H+E V Sbjct: 355 LHPKLVERLVQNGPEQLVYVSCNPKTLARDLDKLKRVYTVSDIIGLDMFPHTPHVEAVVE 414 Query: 362 LVRK 365 L R+ Sbjct: 415 LKRQ 418 >gi|86158782|ref|YP_465567.1| (Uracil-5)-methyltransferase [Anaeromyxobacter dehalogenans 2CP-C] gi|85775293|gb|ABC82130.1| 23S rRNA m(5)U-1939 methyltransferase [Anaeromyxobacter dehalogenans 2CP-C] Length = 438 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 89/362 (24%), Positives = 145/362 (40%), Gaps = 31/362 (8%) Query: 11 EQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKER 70 E+ L E + R+ ++ + P+ YR RA+FH HD + F +++ E Sbjct: 100 ERALHEALRRIGKLEPGSYPARPIVPSPSPLRYRARAKFH--HDRAAGRLVFFRRRSHEP 157 Query: 71 MRI---DYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLL 127 +R+ PG + + +A RL P + +++ + A L+ Sbjct: 158 VRLRECHLLEPGLDALREAVGPALAAARLSP----REVALEWSEAAGRGAAWLLLPEVTS 213 Query: 128 DDAWR-ECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGR--TLIYRQIE 184 R E +R AL L+ +A + D V GR R Sbjct: 214 PVRTRAEALLREVPALQG------LVLQAEGGQPVTAGDPVLRHARAPGRPEAGTQRSRP 267 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 + F Q N G N ++E L D+LELYCG GNF+ L+ V A+E+ P++ Sbjct: 268 DVFQQANRGANARLVETALDLLAPEGEDVLELYCGAGNFTGPLSDRARSVSAIEVQGPAL 327 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 + AR ++ NV+ + +A RE + RF +DPPR G Sbjct: 328 DLARADLGG---RNVRFFAGDALALARAFGRESGPG--------ARRFGAALLDPPREGA 376 Query: 305 DDATVGMVQ-AYPHILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHMECGVLL 362 + P +Y+SC+P + RDL + + + + + D FP T H+E LL Sbjct: 377 RGIGPALRDLGVPRAVYVSCDPATFARDLRACVEAGYRVAAVVPVDMFPQTHHVEGVALL 436 Query: 363 VR 364 R Sbjct: 437 ER 438 >gi|150021420|ref|YP_001306774.1| RNA methyltransferase [Thermosipho melanesiensis BI429] gi|149793941|gb|ABR31389.1| RNA methyltransferase, TrmA family [Thermosipho melanesiensis BI429] Length = 435 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 60/184 (32%), Positives = 92/184 (50%), Gaps = 20/184 (10%) Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 +F Q N + M+++ L + G+ +L+L+ G G FS+ LA V+AV S Sbjct: 268 AFFQNNFYVTEKMIDY-LTKNLDLNGNEVVLDLFSGLGTFSIRLALLSKFVVAVGSNHVS 326 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 V+A R N N + N+K + + EF + N K+ D+ + VDPPRSG Sbjct: 327 VKAGRANANINGLRNIKFIESDAYEFLK--------NSEKNFDV-------LVVDPPRSG 371 Query: 304 LDDATVG--MVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVL 361 L +++ I Y+SCNP + RDL +L + I+ + LFD FP T H+E + Sbjct: 372 LGKEMCNEILLRKPEKIAYVSCNPSTFSRDLKMLMELYEIKSIKLFDMFPQTYHIESIAI 431 Query: 362 LVRK 365 L RK Sbjct: 432 LARK 435 >gi|319647052|ref|ZP_08001278.1| YefA protein [Bacillus sp. BT1B_CT2] gi|317390876|gb|EFV71677.1| YefA protein [Bacillus sp. BT1B_CT2] Length = 458 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 53/156 (33%), Positives = 81/156 (51%), Gaps = 15/156 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G SL LA+ +V VEI ++E A+ N N + N + E Sbjct: 315 VIDAYCGIGTISLFLAKQAKKVYGVEIVPEAIEDAKRNAELNGIENAE---FEVGEAEVV 371 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330 + + E D T+ VDPPR G D+A + +++ P ++Y+SCNP +L R Sbjct: 372 IPKWYEEGIAAD---------TLVVDPPRKGCDEALLRTIIEMKPKRVVYVSCNPGTLAR 422 Query: 331 DLSILSTTHTIER-LALFDQFPYTRHMECGVLLVRK 365 DL +L + R + D FP+T H+EC VLLV+K Sbjct: 423 DLRVLEDGGYVTREVQPVDMFPHTAHVECCVLLVKK 458 >gi|258626910|ref|ZP_05721714.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio mimicus VM603] gi|258580833|gb|EEW05778.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio mimicus VM603] Length = 265 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 62/189 (32%), Positives = 97/189 (51%), Gaps = 21/189 (11%) Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAK 241 + N F Q N +N M+E L + + D +L+L+CG GNF+L LA+ V+ VE + Sbjct: 91 LPNHFIQVNRAVNQQMVEQALNWLEVNKQDRVLDLFCGLGNFTLPLAKQAQEVVGVEGVE 150 Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY---RFKTIFVD 298 V+ A +N N +NNV F QA N +D+ S+ +F + +D Sbjct: 151 EMVQHATHNAKLNQINNVA--------FYQA-------NLEQDMTNASWAQQKFAKVLLD 195 Query: 299 PPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHM 356 P R+G + + ++Y+SCNP +L RD S+LS +E+L + D FP+T H+ Sbjct: 196 PARAGAEGIVDQLAALGAERVVYVSCNPATLARDSQSLLSQGFRLEKLGMLDMFPHTSHL 255 Query: 357 ECGVLLVRK 365 E L V+K Sbjct: 256 ESMALFVKK 264 >gi|262166494|ref|ZP_06034231.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Vibrio mimicus VM223] gi|262026210|gb|EEY44878.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Vibrio mimicus VM223] Length = 440 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 62/189 (32%), Positives = 97/189 (51%), Gaps = 21/189 (11%) Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAK 241 + N F Q N +N M+E L + + D +L+L+CG GNF+L LA+ V+ VE + Sbjct: 266 LPNHFIQVNRAVNQQMVEQALNWLEVNKQDRVLDLFCGLGNFTLPLAKQAQEVVGVEGVE 325 Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY---RFKTIFVD 298 V+ A +N N +NNV F QA N +D+ S+ +F + +D Sbjct: 326 EMVQHATHNAKLNQINNVA--------FYQA-------NLEQDMTNASWAQQKFAKVLLD 370 Query: 299 PPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRD-LSILSTTHTIERLALFDQFPYTRHM 356 P R+G + + ++Y+SCNP +L RD S+LS +E+L + D FP+T H+ Sbjct: 371 PARAGAEGIVDQLAALGAERVVYVSCNPATLARDSQSLLSQGFRLEKLGMLDMFPHTSHL 430 Query: 357 ECGVLLVRK 365 E L V+K Sbjct: 431 ESMALFVKK 439 >gi|114320510|ref|YP_742193.1| 23S rRNA 5-methyluridine methyltransferase [Alkalilimnicola ehrlichii MLHE-1] gi|122311777|sp|Q0A8Y4|RUMA_ALHEH RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|114226904|gb|ABI56703.1| 23S rRNA m(5)U-1939 methyltransferase [Alkalilimnicola ehrlichii MLHE-1] Length = 445 Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 74/222 (33%), Positives = 105/222 (47%), Gaps = 28/222 (12%) Query: 155 ANKTKICLDRDYVDERLTVA----GRTLIYRQIENSFTQPNAGINVHMLEW---VLAATK 207 N+ + L D V RL A G L +R FTQ NA IN M++ +LA Sbjct: 238 GNEATMALVHDPVGRRLDYALPGHGVRLGFRP--GDFTQVNAEINRAMVDQALDLLAVEP 295 Query: 208 GIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267 G + +L+L+CG GNF+L LAR V+ VE A+ VE R N N ++N VR Sbjct: 296 GQR--VLDLFCGLGNFTLPLARRASEVVGVEGAEALVERGRENALRNGLDN---VRFYGA 350 Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNP 325 + T A D + F + +DPPRSG + +G+V A I+Y+SC P Sbjct: 351 DLTLAA---------ADQPWATGGFDRVLLDPPRSGAFE-VLGLVAALGPKRIVYVSCGP 400 Query: 326 DSLCRDLSILSTTHT--IERLALFDQFPYTRHMECGVLLVRK 365 +L RD L H + + D FP+T H+E + R+ Sbjct: 401 ATLARDAGELVHRHGYRLTAAGVMDMFPHTAHVESMAVFQRE 442 >gi|269960399|ref|ZP_06174772.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269834826|gb|EEZ88912.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 436 Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 94/377 (24%), Positives = 167/377 (44%), Gaps = 62/377 (16%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQI---FRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66 Y+QQL K LRQ+M F ++++ E + YR RA ++ D + F + Sbjct: 98 YDQQLTHKQQTLRQLMRKFAGSDIELDAPVLGESLGYRRRARVSLFVD-KKTRQLHFGFR 156 Query: 67 TKERMRIDYFMPGSLL---INALMIEMMATIRL--EPLLRAKLFQIDYLTSQSDQAIVTL 121 K+ +I +L +N L+ E+ +T++ +P +L ++ + + I Sbjct: 157 KKQSKQIAQVTDCPVLAPELNVLLPEIYSTLKAFKKP---EQLGHVELVLGDNGPCITLR 213 Query: 122 IYHRLLD---DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTV---AG 175 +L + ++ E A R +L+ QL D ++ + AG Sbjct: 214 HLSKLTEKETNSLLELAKRHNASLYLMPETDQL-------------DLIEGEVPFYQEAG 260 Query: 176 RTLIYRQIENSFTQPNAGINVHML----EWVLAATKGIQGD--LLELYCGNGNFSLVLAR 229 T+ + N+F Q N +N M+ EW+ Q D +L+L+CG GNFSL +A+ Sbjct: 261 VTVPF--TPNNFIQVNQAVNQKMVAQAVEWL-----DPQSDERVLDLFCGLGNFSLPIAK 313 Query: 230 HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNRLKDIDIH 288 V+ VE VE A N + N +NN + + ++F + +F++ Sbjct: 314 RAKHVVGVEGVAEMVEKAANNASLNQINNAQFYHANLEQDFEGQVWAAEQFDK------- 366 Query: 289 SYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRD-LSILSTTHTIERLA 345 + +DP R+G + V A ++Y+SCNP +L RD S+L + + +L Sbjct: 367 ------VLLDPARAGA-SGIIDQVSALGAQRVVYVSCNPATLARDSQSLLEQGYQLTKLG 419 Query: 346 LFDQFPYTRHMECGVLL 362 + D FP+T H+E L+ Sbjct: 420 MLDMFPHTSHLESMALV 436 >gi|322807179|emb|CBZ04753.1| RNA methyltransferase, TrmA family [Clostridium botulinum H04402 065] Length = 453 Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 59/234 (25%), Positives = 107/234 (45%), Gaps = 31/234 (13%) Query: 133 ECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNA 192 EC ++ LH + + + +K +I RDY+ E L L ++ +F Q N+ Sbjct: 234 ECKGEIKGILHTINDTLSDVVQVDKLEILYGRDYIIEELL----GLKFKIAPEAFFQTNS 289 Query: 193 GINVHMLEWVLAATKGIQGD-----LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA 247 E + + K GD + +LYCG G ++A +V+ VE+ + +V+AA Sbjct: 290 ----KGAEKLYSIVKDFLGDASSKVVFDLYCGTGTIGQIVAPKAKKVIGVELIEEAVKAA 345 Query: 248 RYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307 N N +NN + + + + ++++ + I +DPPR G+ Sbjct: 346 NENAKLNGLNNCEFIAGDVAKVIKDVKQKPDI---------------IILDPPRPGVHPV 390 Query: 308 TVGMVQAY--PHILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMEC 358 + V + I+Y+SCNP +L DL ++ + +E++ D FP+T H EC Sbjct: 391 ALEYVVKFQPKEIIYVSCNPKTLVDDLKYLIDNGYKLEKVKGMDMFPHTPHTEC 444 >gi|121533508|ref|ZP_01665336.1| RNA methyltransferase, TrmA family [Thermosinus carboxydivorans Nor1] gi|121308067|gb|EAX48981.1| RNA methyltransferase, TrmA family [Thermosinus carboxydivorans Nor1] Length = 462 Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 63/218 (28%), Positives = 103/218 (47%), Gaps = 22/218 (10%) Query: 155 ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL--AATKGIQGD 212 +T + ++ + +RL +++ SF Q N V + + A G++ Sbjct: 261 GEETSVIWGKETITDRLG----GFVFQISARSFFQVNTEQTVRLYNKAVEYAGLTGVE-T 315 Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 ++ YCG G +L LA+ +V +E+ +P+V A N N V+NV + + + Sbjct: 316 AIDAYCGTGTITLFLAKRAAKVYGIEVVEPAVRDAWLNARRNGVDNVDFIVGDAVDVMPK 375 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCR 330 + + R + I VDPPR+G D + V+ P I+Y+SCNP SL R Sbjct: 376 LYKS------------GVRPQAIVVDPPRAGCDRRVLETFVRMQPDRIVYVSCNPASLAR 423 Query: 331 DLSILSTTHTIER-LALFDQFPYTRHMECGVLLVRKPS 367 DL++L+ + R + D FP T H+EC V L RK S Sbjct: 424 DLAVLAECGYMTREIQPVDMFPQTSHIECVVSLKRKHS 461 >gi|188534844|ref|YP_001908641.1| 23S rRNA 5-methyluridine methyltransferase [Erwinia tasmaniensis Et1/99] gi|226725381|sp|B2VFZ2|RUMA_ERWT9 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|188029886|emb|CAO97770.1| 23S rRNA (uracil-5-)-methyltransferase [Erwinia tasmaniensis Et1/99] Length = 438 Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 58/185 (31%), Positives = 90/185 (48%), Gaps = 21/185 (11%) Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 F Q N +N M+ LA D +L+L+CG GNF+L + + V+ VE V Sbjct: 269 FIQVNDDVNQQMVARALAWLDLQPEDRVLDLFCGMGNFTLPMGKFAKNVVGVEGVAALVA 328 Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDPPRS 302 A YN N +NNV + + +E D+ + F + +DP R+ Sbjct: 329 KAGYNAELNCLNNVAFWQHNLEE---------------DVSRQPWAVEGFNKVLLDPARA 373 Query: 303 GLDDATVGMVQAYPH-ILYISCNPDSLCRDLSILSTT-HTIERLALFDQFPYTRHMECGV 360 G +++ P ++Y+SCNP +L RD IL T+ + +ER+ + D FP+T H+E V Sbjct: 374 GAAGVMAHIIKIAPQRVVYVSCNPTTLARDSEILLTSGYQLERVTMLDMFPHTGHLESMV 433 Query: 361 LLVRK 365 L RK Sbjct: 434 LFSRK 438 >gi|170765935|ref|ZP_02900746.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia albertii TW07627] gi|170125081|gb|EDS94012.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia albertii TW07627] Length = 433 Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 61/189 (32%), Positives = 93/189 (49%), Gaps = 31/189 (16%) Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIA 240 F Q NAG+N M LEW+ +Q D +L+L+CG GNF+L +A V+ VE Sbjct: 263 FIQVNAGVNQKMVAQALEWL-----DVQPDDRVLDLFCGMGNFTLPVATRAASVVGVEGV 317 Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFV 297 VE + N N ++NV + ++ D+ + F + + Sbjct: 318 PALVEKGQENARLNGLHNVTFYHENLED---------------DVTKQPWAKNGFDKVLL 362 Query: 298 DPPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRH 355 DP R+G +++ P I+Y+SCNP +L RD ++L +TI RLA+ D FP+T H Sbjct: 363 DPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGH 422 Query: 356 MECGVLLVR 364 +E VL R Sbjct: 423 LESMVLFSR 431 >gi|218893098|ref|YP_002441967.1| 23S rRNA 5-methyluridine methyltransferase [Pseudomonas aeruginosa LESB58] gi|218773326|emb|CAW29138.1| probable RNA methyltransferase [Pseudomonas aeruginosa LESB58] Length = 450 Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 66/193 (34%), Positives = 91/193 (47%), Gaps = 25/193 (12%) Query: 177 TLIYRQIENSFTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD 232 TL YR F Q NA +N M L+W LA T + +L+L+CG GNFSL LAR Sbjct: 273 TLAYR--PGDFVQVNAPMNESMIRQALDW-LAPTADER--VLDLFCGLGNFSLPLARRVA 327 Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNRLKDIDIHSYR 291 RV+ VE VE A N AN + N + SK +A E+ F Sbjct: 328 RVVGVEGVAAMVERAGANALANGLGNAHFFQADLSKALAEAPWAEQGFT----------- 376 Query: 292 FKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSILS-TTHTIERLALFDQ 349 + +DPPR G +A M ++Y+SCNP +L RD ++ + ++R + D Sbjct: 377 --AVLLDPPRDGAFEAVREMSSLGARRVVYVSCNPATLARDAGEMARQGYRLKRAGILDM 434 Query: 350 FPYTRHMECGVLL 362 FP T H+E L Sbjct: 435 FPQTAHVEAMALF 447 >gi|194439665|ref|ZP_03071736.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli 101-1] gi|253772364|ref|YP_003035195.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254162711|ref|YP_003045819.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia coli B str. REL606] gi|297518509|ref|ZP_06936895.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia coli OP50] gi|300931243|ref|ZP_07146583.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS 187-1] gi|194421412|gb|EDX37428.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli 101-1] gi|242378332|emb|CAQ33109.1| 23S rRNA m[5]U1939 methyltransferase [Escherichia coli BL21(DE3)] gi|253323408|gb|ACT28010.1| RNA methyltransferase, TrmA family [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253974612|gb|ACT40283.1| 23S rRNA (uracil-5-)-methyltransferase [Escherichia coli B str. REL606] gi|253978777|gb|ACT44447.1| 23S rRNA (uracil-5-)-methyltransferase [Escherichia coli BL21(DE3)] gi|300460897|gb|EFK24390.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS 187-1] gi|323960697|gb|EGB56321.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli H489] Length = 433 Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 60/184 (32%), Positives = 88/184 (47%), Gaps = 21/184 (11%) Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 F Q NAG+N M+ L D +L+L+CG GNF+L LA V+ VE VE Sbjct: 263 FIQVNAGVNQKMVARALELLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVE 322 Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDPPRS 302 + N N + NV + +E D+ + F + +DP R+ Sbjct: 323 KGQQNARLNGLQNVTFYHENLEE---------------DVTKQPWAKNGFDKVLLDPARA 367 Query: 303 GLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHMECGV 360 G +++ P I+Y+SCNP +L RD ++L +TI RLA+ D FP+T H+E V Sbjct: 368 GAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMV 427 Query: 361 LLVR 364 L R Sbjct: 428 LFSR 431 >gi|328957913|ref|YP_004375299.1| putative RNA methyltransferase [Carnobacterium sp. 17-4] gi|328674237|gb|AEB30283.1| putative RNA methyltransferase [Carnobacterium sp. 17-4] Length = 458 Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 52/155 (33%), Positives = 87/155 (56%), Gaps = 15/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ Y G G +L LA++ V +EI +P+VE A+ N N++ NV +++E Sbjct: 315 VIDAYSGIGTITLTLAKNAKHVYGIEIIEPAVENAKANAELNNIENVTFEAGAAEE---V 371 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD-DATVGMVQAYP-HILYISCNPDSLCR 330 M + E R D+ + VDPPR GL+ + T ++ P ++Y+SCNP +L R Sbjct: 372 MVQWSEEGRTADL---------LVVDPPRKGLEKEFTEAVIAMKPTKMVYVSCNPATLAR 422 Query: 331 DLSILS-TTHTIERLALFDQFPYTRHMECGVLLVR 364 DL++L+ +T++++ D FP T H+E LLVR Sbjct: 423 DLALLTEGGYTVKKVQPVDLFPQTTHVESVTLLVR 457 >gi|153939426|ref|YP_001392140.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum F str. Langeland] gi|152935322|gb|ABS40820.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum F str. Langeland] gi|295320145|gb|ADG00523.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum F str. 230613] Length = 453 Score = 87.4 bits (215), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 59/234 (25%), Positives = 107/234 (45%), Gaps = 31/234 (13%) Query: 133 ECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNA 192 EC ++ LH + + + +K +I RDY+ E L L ++ +F Q N+ Sbjct: 234 ECKGEIKGILHTINDTLSDVVQVDKLEILYGRDYIIEELL----GLKFKIAPEAFFQTNS 289 Query: 193 GINVHMLEWVLAATKGIQGD-----LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA 247 E + + K GD + +LYCG G ++A +V+ VE+ + +V+AA Sbjct: 290 ----KGAEKLYSIVKDFLGDASSKVVFDLYCGTGTIGQIVAPKAKKVIGVELIEEAVKAA 345 Query: 248 RYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307 N N +NN + + + + ++++ + I +DPPR G+ Sbjct: 346 NENAKLNGLNNCEFIAGDVAKVIKDVKQKPDI---------------IILDPPRPGVHPV 390 Query: 308 TVGMVQAY--PHILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMEC 358 + V + I+Y+SCNP +L DL ++ + +E++ D FP+T H EC Sbjct: 391 ALEYVVKFEPKEIIYVSCNPKTLVDDLKYLIDNGYKLEKVKGMDMFPHTPHTEC 444 >gi|329123639|ref|ZP_08252199.1| 23S rRNA (uracil-5-)-methyltransferase [Haemophilus aegyptius ATCC 11116] gi|327469838|gb|EGF15303.1| 23S rRNA (uracil-5-)-methyltransferase [Haemophilus aegyptius ATCC 11116] Length = 438 Score = 87.4 bits (215), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 58/183 (31%), Positives = 88/183 (48%), Gaps = 17/183 (9%) Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 F Q N+ +N M+ L + Q D +L+L+CG GNF+L LA+ + +E V+ Sbjct: 269 FIQVNSALNEPMVNTALDWLELSQQDCVLDLFCGMGNFTLPLAKRVKSAVGIEGVFEMVQ 328 Query: 246 AARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 A N N + N++ + + F + + FN+ I +DPPRSG Sbjct: 329 KAAQNAERNQIKNIEFFQADLDQSFVEQPWANQSFNK-------------ILLDPPRSGA 375 Query: 305 DDATVGMVQ-AYPHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLL 362 A + + ILY+SCNP +L RD IL + IE+ A+ D FP+T H+E L Sbjct: 376 AFALNALCELKAEKILYVSCNPATLVRDAEILCDFGYKIEKSAVIDMFPHTGHLESITLF 435 Query: 363 VRK 365 K Sbjct: 436 TTK 438 >gi|323971613|gb|EGB66844.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli TA007] Length = 433 Score = 87.4 bits (215), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 60/184 (32%), Positives = 88/184 (47%), Gaps = 21/184 (11%) Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 F Q NAG+N M+ L D +L+L+CG GNF+L LA V+ VE VE Sbjct: 263 FIQVNAGVNQKMVARALELLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVE 322 Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDPPRS 302 + N N + NV + +E D+ + F + +DP R+ Sbjct: 323 KGQQNARLNGLQNVTFYHENLEE---------------DVTKQPWAKNGFDKVLLDPARA 367 Query: 303 GLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHMECGV 360 G +++ P I+Y+SCNP +L RD ++L +TI RLA+ D FP+T H+E V Sbjct: 368 GAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMV 427 Query: 361 LLVR 364 L R Sbjct: 428 LFSR 431 >gi|260582573|ref|ZP_05850363.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Haemophilus influenzae NT127] gi|260094384|gb|EEW78282.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Haemophilus influenzae NT127] Length = 438 Score = 87.4 bits (215), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 58/183 (31%), Positives = 88/183 (48%), Gaps = 17/183 (9%) Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 F Q N+ +N M+ L + Q D +L+L+CG GNF+L LA+ + +E V+ Sbjct: 269 FIQVNSALNEPMVNTALDWLELSQQDCVLDLFCGMGNFTLPLAKRVKSAVGIEGVFEMVQ 328 Query: 246 AARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 A N N + N++ + + F + + FN+ I +DPPRSG Sbjct: 329 KAAQNAERNQIKNIEFFQADLDQSFVEQPWANQSFNK-------------ILLDPPRSGA 375 Query: 305 DDATVGMVQ-AYPHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLL 362 A + + ILY+SCNP +L RD IL + IE+ A+ D FP+T H+E L Sbjct: 376 AFALNALCELKAEKILYVSCNPATLVRDAEILCDFGYKIEKSAVIDMFPHTGHLESITLF 435 Query: 363 VRK 365 K Sbjct: 436 TTK 438 >gi|330811210|ref|YP_004355672.1| 23S rRNA (uracil-5-)-methyltransferase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327379318|gb|AEA70668.1| 23S rRNA (uracil-5-)-methyltransferase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 456 Score = 87.4 bits (215), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 58/191 (30%), Positives = 93/191 (48%), Gaps = 23/191 (12%) Query: 178 LIYRQIENSFTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDR 233 L YR F Q NAG+N M L+W+ + +L+L+CG GNF+L LA+ + Sbjct: 274 LAYR--PGDFIQVNAGVNEAMIAQALQWLAPQA---EERVLDLFCGLGNFALPLAKSVRQ 328 Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293 V+AVE + VE A N +N++NN + + +Q L D + F Sbjct: 329 VVAVEGVQTMVERAAANAVSNNLNNTAFFQ---ADLSQP---------LADAEWIGEGFS 376 Query: 294 TIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRD-LSILSTTHTIERLALFDQFP 351 + +DPPR G + + ++Y+SCNP +L RD + ++ + ++R + D FP Sbjct: 377 AVLLDPPRDGAFEVVRKLSSLGAKRLVYVSCNPATLARDTVELIKQGYRLKRAGILDMFP 436 Query: 352 YTRHMECGVLL 362 T H+E L Sbjct: 437 QTAHVEAMALF 447 >gi|148827480|ref|YP_001292233.1| 23S rRNA 5-methyluridine methyltransferase [Haemophilus influenzae PittGG] gi|148718722|gb|ABQ99849.1| 23S rRNA (uracil-5-)-methyltransferase [Haemophilus influenzae PittGG] Length = 438 Score = 87.4 bits (215), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 58/183 (31%), Positives = 88/183 (48%), Gaps = 17/183 (9%) Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 F Q N+ +N M+ L + Q D +L+L+CG GNF+L LA+ + +E V+ Sbjct: 269 FIQVNSALNEPMVNTALDWLELSQQDCVLDLFCGMGNFTLPLAKRVKSAVGIEGVFEMVQ 328 Query: 246 AARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 A N N + N++ + + F + + FN+ I +DPPRSG Sbjct: 329 KAAQNAERNQIKNIEFFQADLDQSFVEQPWANQSFNK-------------ILLDPPRSGA 375 Query: 305 DDATVGMVQ-AYPHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLL 362 A + + ILY+SCNP +L RD IL + IE+ A+ D FP+T H+E L Sbjct: 376 AFALNALCELKAEKILYVSCNPATLVRDAEILCDFGYKIEKSAVIDMFPHTGHLESITLF 435 Query: 363 VRK 365 K Sbjct: 436 TTK 438 >gi|308187944|ref|YP_003932075.1| enzyme [Pantoea vagans C9-1] gi|308058454|gb|ADO10626.1| putative enzyme [Pantoea vagans C9-1] Length = 456 Score = 87.4 bits (215), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 94/365 (25%), Positives = 162/365 (44%), Gaps = 43/365 (11%) Query: 11 EQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHI-WHDGDDLYHIMFDQQTKE 69 +Q A+ + R+ A V ++ +P YR RA + W + + F Q+ Sbjct: 119 QQSKAQALSRMLSRAAAQNVAVDEVIAGQPWGYRRRARLGLQWQNKAQRLQMGFRQEASN 178 Query: 70 RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL-LD 128 + +++ L P L A L + S + +A+ L + L L Sbjct: 179 DL----------------VDIQHCPILAPELEALLVPLHQCLS-ALRAVRRLGHVELVLA 221 Query: 129 DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIY---RQIEN 185 D +R DALHA + +L ++K ++ L D +E L ++ + Q++ Sbjct: 222 DNGPLMILRHLDALHADDRE-KLEQFSHKHQLMLFLDAGEEELNALNESVPFYHSHQLKL 280 Query: 186 SFT-----QPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEI 239 +F+ Q N +N M+ +A D +L+L+CG GNF+L + V+ VE Sbjct: 281 TFSPQDFIQVNDAVNQQMVAKAIAWLDLQPEDRVLDLFCGMGNFTLPVGIFVQNVVGVEG 340 Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299 V A YN N++ NV + + +E E +R + F + +DP Sbjct: 341 IAALVRQAAYNADLNNLKNVSFFQHNLEE---------EVSRQP---WAAQGFNKVLLDP 388 Query: 300 PRSGLDDATVGMVQAYPH-ILYISCNPDSLCRD-LSILSTTHTIERLALFDQFPYTRHME 357 R+G +V+ P ++Y+SCNP +L RD ++LS + +ER+A+ D FP+TRH+E Sbjct: 389 ARAGAAGVMAHVVKLAPERVVYVSCNPTTLARDSQTLLSAGYQLERVAMLDMFPHTRHLE 448 Query: 358 CGVLL 362 VL Sbjct: 449 SMVLF 453 >gi|259909468|ref|YP_002649824.1| 23S rRNA 5-methyluridine methyltransferase [Erwinia pyrifoliae Ep1/96] gi|224965090|emb|CAX56622.1| 23S rRNA (Uracil-5-)-methyltransferase [Erwinia pyrifoliae Ep1/96] gi|283479541|emb|CAY75457.1| putative SAM-dependent methyltransferase [Erwinia pyrifoliae DSM 12163] Length = 438 Score = 87.4 bits (215), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 51/158 (32%), Positives = 80/158 (50%), Gaps = 20/158 (12%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +L+LYCG GNF+L + + V+ VE V A YN N++NNV + + +E Sbjct: 296 VLDLYCGMGNFTLPMGKFAKNVVGVEGVAALVAKAGYNAELNNLNNVTFWQHNLEE---- 351 Query: 273 MRREREFNRLKDIDIHSYR---FKTIFVDPPRSGLDDATVGMVQAYPH-ILYISCNPDSL 328 D+ + F + +DP R+G + + P ++Y+SCNP +L Sbjct: 352 -----------DVSRQPWAAQGFNKVLLDPARAGAAGVMAHITKLAPQRVVYVSCNPTTL 400 Query: 329 CRDLSILSTT-HTIERLALFDQFPYTRHMECGVLLVRK 365 RD IL T+ + +ER+ + D FP+T H+E VL RK Sbjct: 401 ARDSEILLTSGYQLERVTMLDMFPHTGHLESMVLFSRK 438 >gi|229591917|ref|YP_002874036.1| 23S rRNA 5-methyluridine methyltransferase [Pseudomonas fluorescens SBW25] gi|229363783|emb|CAY51209.1| 23s rRNA (uracil-5-)-methyltransferase [Pseudomonas fluorescens SBW25] Length = 450 Score = 87.4 bits (215), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 60/193 (31%), Positives = 94/193 (48%), Gaps = 27/193 (13%) Query: 178 LIYRQIENSFTQPNAGINVHM----LEWVLAATKGIQGD--LLELYCGNGNFSLVLARHF 231 L YR F Q NAG+N M LEW+ Q D +L+L+CG GNF+L LAR Sbjct: 274 LAYR--PGDFVQVNAGVNAAMVAQALEWLAP-----QPDERVLDLFCGLGNFALPLARQV 326 Query: 232 DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291 V+AVE + V+ A N +N+++N + + + +Q L D + Sbjct: 327 REVVAVEGVQTMVDRAAVNAVSNNLHNAQFFQ---ADLSQP---------LTDAEWAKQG 374 Query: 292 FKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRD-LSILSTTHTIERLALFDQ 349 F + +DPPR G + + ++Y+SCNP +L RD + ++ + ++R + D Sbjct: 375 FSAVLLDPPRDGALEVVRKLATLKAKRLVYVSCNPATLARDTVELVKQGYRLKRAGILDM 434 Query: 350 FPYTRHMECGVLL 362 FP T H+E L Sbjct: 435 FPQTAHVEAMALF 447 >gi|322419663|ref|YP_004198886.1| TrmA family RNA methyltransferase [Geobacter sp. M18] gi|320126050|gb|ADW13610.1| RNA methyltransferase, TrmA family [Geobacter sp. M18] Length = 438 Score = 87.4 bits (215), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 105/378 (27%), Positives = 162/378 (42%), Gaps = 47/378 (12%) Query: 8 DQYEQQLAEKVDRLRQMMLAFQVP--NLQIFRSEP--IHYRMRAEFHIWHDGDDLYHIMF 63 +Q EQ+ A D L ++ +VP N+ P YR R + + + F Sbjct: 86 EQLEQKGAIFADTLSRIG---KVPRENVLPVAGSPDCYGYRSRVQVKVSQQKGAVNLGFF 142 Query: 64 DQQTKERMRIDYFMPGSLLINALMIEMMATIR-LEPLLRA--KLFQIDYLTSQSDQAIVT 120 + E + F G L N L+ M + R L P L + Q+D T + I Sbjct: 143 RTASHE---VVDFGAGCPLANDLLNRMASEFRALLPRLPQLDCISQLDLSTGDEGEGIAI 199 Query: 121 LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRA---NKTKICLDRDYVDERLTVA--- 174 L D +L + L A + Q+ + A K L R + E L+ + Sbjct: 200 LHCKGSRPD-------QLVERLSASREQLPSVAGAFVRGGAKGELTRAFGIESLSYSIPA 252 Query: 175 -----GRTLIYRQIENSFTQPNAGINVHMLE--WVLAATKGIQGDLLELYCGNGNFSLVL 227 R L R F+Q N N+ ++ W A G + +L+LYCGNGN S+ L Sbjct: 253 GLFPGSRELRLRFGRGGFSQVNYRQNLALIGTVWEWAGLTGKE-RVLDLYCGNGNISIPL 311 Query: 228 ARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDI 287 A + V VE PS+ A N AN V N +S + + A + R ++ K+ Sbjct: 312 APYAAEVFGVEGFAPSIVDAAANAEANGVGN------ASFQVSDAAQAVRRLHKRKE--- 362 Query: 288 HSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTT-HTIERLAL 346 +F + +DPPR+G + A A I+Y+SC+P +L RDL++LS+ + + R Sbjct: 363 ---KFDLVVLDPPRAGAEAAAELAQLAPEKIIYVSCDPATLARDLAVLSSNGYQLTRSRP 419 Query: 347 FDQFPYTRHMECGVLLVR 364 D FP T H+E L+R Sbjct: 420 VDMFPQTYHLESVTELIR 437 >gi|156975785|ref|YP_001446692.1| 23S rRNA 5-methyluridine methyltransferase [Vibrio harveyi ATCC BAA-1116] gi|226725399|sp|A7MTS9|RUMA_VIBHB RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|156527379|gb|ABU72465.1| hypothetical protein VIBHAR_03529 [Vibrio harveyi ATCC BAA-1116] Length = 439 Score = 87.4 bits (215), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 94/378 (24%), Positives = 168/378 (44%), Gaps = 60/378 (15%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQI---FRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66 Y+QQL K LRQ+M F ++++ E + YR RA ++ D + F + Sbjct: 98 YDQQLTHKQQTLRQLMRKFAGSDIELGAPVLGESLGYRRRARVSLFVD-KKTRQLHFGFR 156 Query: 67 TKERMRIDYFMPGSLL---INALMIEMMATIRL----EPLLRAKLFQIDYLTSQSDQAIV 119 K+ +I +L +N L+ E+ +T++ E L +L D + + Sbjct: 157 KKQSKQIAQVTDCPVLAPELNVLLPEIYSTLKAFKKPEQLGHVELVLGD------NAPCI 210 Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTV---AGR 176 TL + L + + L A+++Q L ++ D V+ + AG Sbjct: 211 TLRHLNKLTEKETNTLVEL-----AKRHQASLYLMPETDQL----DLVEGEVPFYQEAGV 261 Query: 177 TLIYRQIENSFTQPNAGINVHML----EWVLAATKGIQGDLLELYCGNGNFSLVLARHFD 232 T+ + N+F Q N +N M+ +W+ + +L+L+CG GNFSL +A+ Sbjct: 262 TVPF--TPNNFIQVNQAVNQKMVAQAVDWLDPKS---DERVLDLFCGLGNFSLPIAKRAK 316 Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNRLKDIDIHSYR 291 V+ VE VE A N + N +NN + + ++F + +F++ Sbjct: 317 HVVGVEGVAEMVEKAVNNASLNQINNARFYHANLEQDFEGQVWAAEQFDK---------- 366 Query: 292 FKTIFVDPPRSG----LDDATVGMVQAYPHILYISCNPDSLCRDL-SILSTTHTIERLAL 346 + +DP R+G +D +V + I+Y+SCNP +L RD S+L + + +L + Sbjct: 367 ---VLLDPARAGASGIIDQVSVLGAR---RIVYVSCNPATLARDSQSLLEQGYQLTKLGM 420 Query: 347 FDQFPYTRHMECGVLLVR 364 D FP+T H+E L + Sbjct: 421 LDMFPHTSHLESMALFEK 438 >gi|27364943|ref|NP_760471.1| 23S rRNA m(5)U1939 methyltransferase [Vibrio vulnificus CMCP6] gi|320155330|ref|YP_004187709.1| 23S rRNA (Uracil-5-) -methyltransferase RumA [Vibrio vulnificus MO6-24/O] gi|50401570|sp|Q8DC67|RUMA_VIBVU RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|27361089|gb|AAO09998.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio vulnificus CMCP6] gi|319930642|gb|ADV85506.1| 23S rRNA (Uracil-5-) -methyltransferase RumA [Vibrio vulnificus MO6-24/O] Length = 438 Score = 87.4 bits (215), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 100/382 (26%), Positives = 161/382 (42%), Gaps = 68/382 (17%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPI-----HYRMRAEFHIWHDGDDLYHIMFD 64 Y+ QLA K L Q+M F +I S P+ YR RA + D + F Sbjct: 98 YQAQLAYKQRTLLQLMKKFS--GSEILLSPPVTGLEKAYRRRARVSLMWDKKS-RQLQFG 154 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDY--------LTSQSDQ 116 + K+ +I+ +L+ L L P L+A L + L + + Sbjct: 155 FRRKQSKQIENVTQCPVLVAELEC-------LLPELKAILSHFQHPEHLGHVELVAADNG 207 Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGR 176 A++TL + L D E +LR + + L+ +++ L+R ++G Sbjct: 208 AVITLRHTGPLLD---EDVAKLRQCAEQHQATLYLMPASDQ----LER--------ISGE 252 Query: 177 TLIYRQI-------ENSFTQPNAGIN----VHMLEWVLAATKGIQGDLLELYCGNGNFSL 225 Y++I N+F Q N +N V LEW+ + +L+L+CG GNFSL Sbjct: 253 APYYQEIGFKVPFEPNNFIQVNQKVNQQMVVQALEWLDPQSSD---RVLDLFCGLGNFSL 309 Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285 +A V VE V+ A N + N +NN + + E++F Sbjct: 310 PIASKAKSVTGVEGVDEMVQKAAINASLNQINNAQFFHAN---------LEQDF---VGQ 357 Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRD-LSILSTTHTIE 342 S +F I +DP R+G + V A ++Y+SCNP +L RD S+L + + Sbjct: 358 PWASEKFDKILLDPARAGA-SGIIEQVSALGAKRVVYVSCNPATLARDSQSLLEQGYRLT 416 Query: 343 RLALFDQFPYTRHMECGVLLVR 364 +L + D FPYT H+E L + Sbjct: 417 KLGMLDMFPYTSHLESMALFEK 438 >gi|52424295|ref|YP_087432.1| 23S rRNA 5-methyluridine methyltransferase [Mannheimia succiniciproducens MBEL55E] gi|115305730|sp|Q65W13|RUMA_MANSM RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|52306347|gb|AAU36847.1| TrmA protein [Mannheimia succiniciproducens MBEL55E] Length = 440 Score = 87.4 bits (215), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 57/186 (30%), Positives = 91/186 (48%), Gaps = 23/186 (12%) Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 F Q N+ +N M L+W+ Q +L+L+CG GNF+L L+R + +E Sbjct: 270 FIQVNSLLNQRMITAALDWLDVQK---QDHVLDLFCGMGNFTLPLSRRVKSAVGIEGISA 326 Query: 243 SVEAARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301 VE A+ N N NV+ R + F + FN+ I +DPPR Sbjct: 327 MVEKAKANAERNQCQNVQFYRADLDQNFADEVWATEPFNK-------------ILLDPPR 373 Query: 302 SGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSI-LSTTHTIERLALFDQFPYTRHMECG 359 +G A + + ILY+SCNP +L RD I L++ + ++++A+ D FP+T H+E Sbjct: 374 TGAAFALNALCRLKAEKILYVSCNPATLVRDAEILLNSDYRVKKVAMIDMFPHTGHLESI 433 Query: 360 VLLVRK 365 L ++ Sbjct: 434 TLFEKQ 439 >gi|282934859|ref|ZP_06340092.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus jensenii 208-1] gi|281301090|gb|EFA93401.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus jensenii 208-1] Length = 481 Score = 87.4 bits (215), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 52/156 (33%), Positives = 77/156 (49%), Gaps = 15/156 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ Y G G L +A+H +V VEI KP+V+ AR N N + N + V ++E Sbjct: 338 VIDAYSGIGTIGLSVAKHVKQVYGVEIVKPAVQDARENALLNGIENAEYVCGKAEELMPN 397 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330 E + IFVDPPR GL + V+ P I+YISCNP ++ R Sbjct: 398 WVNE------------GMKADVIFVDPPRKGLTPEFIEASVKTNPQKIVYISCNPATMVR 445 Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVRK 365 DL++ + E + D FP T H+EC +L +K Sbjct: 446 DLTMYQELGYDFEEITPVDMFPQTPHVECVTVLEKK 481 >gi|150391752|ref|YP_001321801.1| RNA methyltransferase [Alkaliphilus metalliredigens QYMF] gi|149951614|gb|ABR50142.1| RNA methyltransferase, TrmA family [Alkaliphilus metalliredigens QYMF] Length = 452 Score = 87.4 bits (215), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 70/274 (25%), Positives = 127/274 (46%), Gaps = 24/274 (8%) Query: 99 LLRAKLFQIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGR 154 LLR + ++ + T + ++T L + + L D E L+ H + + Sbjct: 192 LLRHVITKVGFTTGEVMVVLITNGKQLPHKKELIDLLIEGVKGLKTVAHNINEKNTNVIF 251 Query: 155 ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDL 213 +KTK Y+ + + L + SF Q N + E L A + ++ Sbjct: 252 GSKTKTLHGEGYITDYIG----DLKFNISPQSFFQVNPMQTKALYEKALEYANLTGEENV 307 Query: 214 LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273 L++YCG G SL LA+ +V VE+ + ++E A++N N++NN + ++E + Sbjct: 308 LDIYCGIGTISLFLAQKAKKVYGVEVVEAAIEDAKHNAKINNLNNAEFHVGKAEEVVPQL 367 Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCRD 331 +E R + + VDPPR G +++ + +V P ++Y+SCNP +L RD Sbjct: 368 YKE------------GIRTEVVVVDPPRKGCEESVLETIVNMEPKRVVYVSCNPATLARD 415 Query: 332 LSILST-THTIERLALFDQFPYTRHMECGVLLVR 364 L+ L + + + D FP++ H+E VL+ R Sbjct: 416 LAYLEEHGYKTQEVQPVDMFPHSSHVETVVLMSR 449 >gi|331086752|ref|ZP_08335829.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lachnospiraceae bacterium 9_1_43BFAA] gi|330409918|gb|EGG89353.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lachnospiraceae bacterium 9_1_43BFAA] Length = 466 Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 94/352 (26%), Positives = 151/352 (42%), Gaps = 41/352 (11%) Query: 39 EPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEP 98 EP HYR +A+F I D D F R +P + AL + I LE Sbjct: 125 EPFHYRNKAQFPIGTDKDGKAVAGF-----YAGRTHQIIPNTDC--ALGVSQNQQI-LEE 176 Query: 99 LLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWR---------------ECAIRLRDALH 143 +L + +++ + ++Q L+ H L+ + CA + D L Sbjct: 177 ILS--VMNENHIPAYNEQDCSGLVRHILIRYGFTTKEIMVCFVINGDNLPCADKFVDKLS 234 Query: 144 ARKYQIQLIGRANK--TKICLDRD----YVDERLTVAGRTLIYRQIENSFTQPNAGINVH 197 + + NK T + + ++ + D +T + Y+ SF Q N Sbjct: 235 QIEGMRSITFSKNKENTNVIMGKEIEVLWGDGYITDYIGNVKYQISPLSFYQVNPVQTEK 294 Query: 198 MLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH 255 + ++ L G+ G+ + +LYCG G SL LA+ +V VEI ++E A+ N N Sbjct: 295 LYKYALEYA-GLTGEETVWDLYCGIGTISLFLAQKAKQVYGVEIVPQAIEDAKQNAELND 353 Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQA 314 + N + ++E A N K+ I VDPPR G ++A + MV+ Sbjct: 354 MKNAEFFVGKAEEILPAYYE----NYAKEHPGQQAHADVIVVDPPRKGCEEALLETMVKM 409 Query: 315 YP-HILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364 P I+Y+SC+ +L RDL L + +E++ + DQFP T H EC LL R Sbjct: 410 QPDRIVYVSCDSATLARDLKYLCGEGYALEKVQVVDQFPNTVHTECVTLLQR 461 >gi|315650587|ref|ZP_07903651.1| 23S rRNA (uracil-5-)-methyltransferase [Eubacterium saburreum DSM 3986] gi|315487151|gb|EFU77469.1| 23S rRNA (uracil-5-)-methyltransferase [Eubacterium saburreum DSM 3986] Length = 465 Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 66/210 (31%), Positives = 102/210 (48%), Gaps = 24/210 (11%) Query: 168 DERLTVAGRTLI--------YRQIENSFTQPNAGINVHMLEWVL--AATKGIQGDLLELY 217 D +T+ GR I +R SF Q N + L AA G + + ++Y Sbjct: 262 DRTITIYGREYIEDYIGDVKFRISPQSFYQVNPVQTKKLYGKALEYAALTG-EETVWDMY 320 Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277 CG G SL LA+ V VEI +++ AR N N++ NVK ++E E Sbjct: 321 CGIGTISLFLAKSAKFVYGVEIVDAAIQNARENAKINNIENVKFFVGKAEEIITG---EY 377 Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCRDLSIL 335 E ++DID+ I VDPPR GLD + M++ P I+Y+SC+ +L RDL +L Sbjct: 378 ENGNIRDIDV-------IVVDPPRKGLDKIAIDTMLKLSPKRIVYVSCDSSTLARDLKLL 430 Query: 336 -STTHTIERLALFDQFPYTRHMECGVLLVR 364 + +++L + DQF + H E V++ + Sbjct: 431 CEKEYELKKLTVVDQFARSYHTESVVVMSK 460 >gi|295400601|ref|ZP_06810579.1| RNA methyltransferase, TrmA family [Geobacillus thermoglucosidasius C56-YS93] gi|294977504|gb|EFG53104.1| RNA methyltransferase, TrmA family [Geobacillus thermoglucosidasius C56-YS93] Length = 458 Score = 87.0 bits (214), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 49/164 (29%), Positives = 83/164 (50%), Gaps = 15/164 (9%) Query: 204 AATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVR 263 AA G + +++ YCG G L LA+ + +++ ++E A+ N + N V Sbjct: 308 AALTGTE-KVVDAYCGVGTIGLWLAKDAGEIRGMDVIPEAIEDAKKNAKKHGFANATYVS 366 Query: 264 MSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYPH-ILYI 321 ++ +E ++ I VDPPR+G D+ + + + P I+Y+ Sbjct: 367 GKAEALLPKWVKE------------GWKPDVIVVDPPRTGCDEQLLKTILKVKPQRIVYV 414 Query: 322 SCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 SCNP SL RD+ +LS + ++ + D FP+T H+EC VLLV+K Sbjct: 415 SCNPSSLARDIDVLSKFYKVDYIQPVDMFPHTAHVECCVLLVKK 458 >gi|256852247|ref|ZP_05557633.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus jensenii 27-2-CHN] gi|260661721|ref|ZP_05862632.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus jensenii 115-3-CHN] gi|256615293|gb|EEU20484.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus jensenii 27-2-CHN] gi|260547468|gb|EEX23447.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus jensenii 115-3-CHN] Length = 447 Score = 87.0 bits (214), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 52/156 (33%), Positives = 77/156 (49%), Gaps = 15/156 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ Y G G L +A+H +V VEI KP+V+ AR N N + N + V ++E Sbjct: 304 VIDAYSGIGTIGLSVAKHVKQVYGVEIVKPAVQDARENALLNGIENAEYVCGKAEELMPN 363 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330 E + IFVDPPR GL + V+ P I+YISCNP ++ R Sbjct: 364 WVNE------------GMKADVIFVDPPRKGLTPEFIEASVKTNPQKIVYISCNPATMVR 411 Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVRK 365 DL++ + E + D FP T H+EC +L +K Sbjct: 412 DLTMYQELGYDFEEITPVDMFPQTPHVECVTVLEKK 447 >gi|313898104|ref|ZP_07831643.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium sp. HGF2] gi|312957132|gb|EFR38761.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium sp. HGF2] Length = 444 Score = 87.0 bits (214), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 54/156 (34%), Positives = 80/156 (51%), Gaps = 15/156 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +L+LYCG G S+ LA+ V +EI ++ AR N A N + N++ V + ++ + Sbjct: 299 VLDLYCGVGTISMFLAQRAKHVTGIEIVPQAIRDARKNAALNGIANIEFVCSDAADYAK- 357 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330 +L + H I VDPPR G D T+ MV P I+Y+SC+P +L R Sbjct: 358 --------KLCEQGAHP---DVIVVDPPRKGCDAQTIDSMVMMQPKRIVYVSCDPGTLAR 406 Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRK 365 DL +L + E + D FP+T H+E LL RK Sbjct: 407 DLKLLEEKGYRTEIVQPLDMFPFTHHVETVCLLSRK 442 >gi|153955290|ref|YP_001396055.1| RNA methyltransferase [Clostridium kluyveri DSM 555] gi|219855711|ref|YP_002472833.1| hypothetical protein CKR_2368 [Clostridium kluyveri NBRC 12016] gi|146348148|gb|EDK34684.1| Predicted RNA methyltransferase [Clostridium kluyveri DSM 555] gi|219569435|dbj|BAH07419.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 453 Score = 87.0 bits (214), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 58/236 (24%), Positives = 107/236 (45%), Gaps = 31/236 (13%) Query: 137 RLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINV 196 +L +H + + + +K ++ RDY+ E + L ++ +F Q N+ Sbjct: 238 KLSGIVHTINDSLSDVVQIDKLEVLYGRDYIMEEIL----GLKFKISPKTFFQTNS---- 289 Query: 197 HMLEWVLAATKGIQGDL-----LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251 E + K GD+ +LYCG G S ++A +V+ VE+ + +V++A N Sbjct: 290 KGAEKLYGIVKEFLGDVSLKTVFDLYCGTGTISQIVASSAKKVIGVELVEEAVKSANENA 349 Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311 N + N K + + + + + + I +DPPR G+ + Sbjct: 350 CLNEIENCKFIAGDVAKVVKTLNDKPDL---------------IILDPPRPGIHPKALRQ 394 Query: 312 VQAY--PHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364 + + I+Y+SCNP +L DL +L + I+++ L D FP+T H+EC L+ R Sbjct: 395 IIDFNVNEIIYVSCNPKTLVEDLKVLIDGGYRIDKVKLMDMFPHTSHVECVALMSR 450 >gi|194337875|ref|YP_002019669.1| RNA methyltransferase, TrmA family [Pelodictyon phaeoclathratiforme BU-1] gi|194310352|gb|ACF45052.1| RNA methyltransferase, TrmA family [Pelodictyon phaeoclathratiforme BU-1] Length = 488 Score = 87.0 bits (214), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 64/197 (32%), Positives = 99/197 (50%), Gaps = 20/197 (10%) Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNF 223 Y+ ERL L +R NSF Q N+ +L + G++ + + +LYCG G Sbjct: 288 YITERLG----ALDFRISANSFFQTNSS-QAELLYQSILEVAGLRAEDTVYDLYCGTGTI 342 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 +L LA+H +V+ +E+ + S+ AR N A N ++NV ++ K+F Q M + L Sbjct: 343 TLYLAKHCRQVVGLEVVESSINDARSNAAFNSIDNVAFFQVDLKDF-QGM-----LDLLG 396 Query: 284 DIDIHSYRFKTIFVDPPRSGL-DDATVGMVQAYP-HILYISCNPDSLCRD-LSILSTTHT 340 D I DPPR+G+ A M++ P I+Y+SCNP SL RD I + Sbjct: 397 SYDAPG----VIITDPPRAGMHPKALSTMLRLRPRRIIYVSCNPASLARDGKEICLQGYK 452 Query: 341 IERLALFDQFPYTRHME 357 + + D FP+T H+E Sbjct: 453 LLSVQPVDMFPHTSHIE 469 >gi|226950293|ref|YP_002805384.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum A2 str. Kyoto] gi|226843642|gb|ACO86308.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum A2 str. Kyoto] Length = 450 Score = 87.0 bits (214), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 61/240 (25%), Positives = 111/240 (46%), Gaps = 31/240 (12%) Query: 133 ECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNA 192 EC ++ LH + + + +K +I RDY+ E L L ++ +F Q N+ Sbjct: 234 ECKGEIKGILHTINDTLSDVVQVDKLEILYGRDYIIEELL----GLKFKIAPEAFFQTNS 289 Query: 193 GINVHMLEWVLAATKGIQGD-----LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA 247 E + + K GD +L+LYCG G ++A +V+ VE+ + +V+AA Sbjct: 290 ----KGAEKLYSIVKDFLGDASSKVVLDLYCGTGTIGQIVAPKAKKVIGVELIEEAVKAA 345 Query: 248 RYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307 N N +NN + + + + ++++ + I +DPPR G+ Sbjct: 346 NENAKLNGLNNCEFIAGDVAKVIKDVKQKPDI---------------IILDPPRPGVHPV 390 Query: 308 TVGMVQAY--PHILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 + V + I+Y+SCNP +L DL ++ + +E++ D FP+T H+E V L + Sbjct: 391 ALEYVVKFEPKEIIYVSCNPKTLVDDLKYLIDNGYKLEKVKGMDMFPHTPHVETVVKLSK 450 >gi|283768823|ref|ZP_06341734.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bulleidia extructa W1219] gi|283104609|gb|EFC05982.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bulleidia extructa W1219] Length = 436 Score = 87.0 bits (214), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 50/154 (32%), Positives = 85/154 (55%), Gaps = 15/154 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L+E YCG G SL+ + ++V +E+ +++ A+ N NH++N E A Sbjct: 293 LVEAYCGIGVMSLLASSKAEQVYGIELNPHAIQDAKRNAELNHLDNCHF------ECADA 346 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCR 330 + + + ID T+ +DPPRSGLD+A + ++++ P I+YISCNP +L + Sbjct: 347 ADGLYKIAKKQKID-------TLLIDPPRSGLDEAMLEAILKSQPDRIIYISCNPATLAK 399 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 ++++L + I + FD FP T H+EC LL + Sbjct: 400 NIAVLKWKYQILTIQAFDLFPQTPHVECLCLLSK 433 >gi|229824364|ref|ZP_04450433.1| hypothetical protein GCWU000282_01685 [Catonella morbi ATCC 51271] gi|229786164|gb|EEP22278.1| hypothetical protein GCWU000282_01685 [Catonella morbi ATCC 51271] Length = 499 Score = 87.0 bits (214), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 56/156 (35%), Positives = 81/156 (51%), Gaps = 15/156 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +L+ YCG G SL LAR +V A+EI +++ AR N AN ++NV ++E A Sbjct: 355 VLDAYCGIGTISLALARQAGQVYAMEIVPEAIDMARANAEANGLSNVTFQAGKAEEVLPA 414 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCR 330 + E IH F VDPPR GLD V +++ P I+Y+SCNP + R Sbjct: 415 WQAE---------GIH---FDVAVVDPPRKGLDPEFVKTLIELAPDKIVYVSCNPATCAR 462 Query: 331 DLSILS-TTHTIERLALFDQFPYTRHMECGVLLVRK 365 D +L+ + ++ + D FP T H+E LL RK Sbjct: 463 DCQLLAQAGYELQWVQPVDLFPKTAHIEVVGLLERK 498 >gi|238754498|ref|ZP_04615853.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Yersinia ruckeri ATCC 29473] gi|238707327|gb|EEP99689.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Yersinia ruckeri ATCC 29473] Length = 419 Score = 87.0 bits (214), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 59/189 (31%), Positives = 92/189 (48%), Gaps = 31/189 (16%) Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIA 240 F Q N +N M LEW+ + D +L+L+CG GNF+L LARH +V+ +E Sbjct: 251 FIQVNPTVNQKMVAQALEWL-----DVHPDERVLDLFCGMGNFTLPLARHARQVVGIEGV 305 Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFV 297 V +YN N ++NV + +E DID + F I + Sbjct: 306 ATLVANGQYNAQINSLSNVSFFHENLEE---------------DIDKQPWAAQGFDKILL 350 Query: 298 DPPRSGLDDATVGMVQAYPH-ILYISCNPDSLCRDLSI-LSTTHTIERLALFDQFPYTRH 355 DP R+G + +V+ P ++Y+SCNP +L RD + L + + R+ + D FP+T H Sbjct: 351 DPARAGAAGVMLHIVKLAPKRVVYVSCNPTTLARDSHVLLDAGYRLARVRMLDMFPHTGH 410 Query: 356 MECGVLLVR 364 +E L +R Sbjct: 411 LESMALFIR 419 >gi|260887170|ref|ZP_05898433.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Selenomonas sputigena ATCC 35185] gi|260863232|gb|EEX77732.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Selenomonas sputigena ATCC 35185] Length = 466 Score = 86.7 bits (213), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 49/155 (31%), Positives = 76/155 (49%), Gaps = 15/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G +L LA+ RV +EI KP++E A+ N NH+ N + + E Sbjct: 320 VIDAYCGTGTITLFLAQKAHRVYGIEIVKPAIEDAKKNARDNHIKNAAFLVGDATELMPR 379 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330 + E + R I VDPPR+G + + I+Y+SCNP +L R Sbjct: 380 LCHE------------NIRPHVIVVDPPRAGCTETVLKTFAGMRPDRIVYVSCNPATLAR 427 Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364 DL+IL+ ++ + D FP T H+E L+R Sbjct: 428 DLAILAKLGYSAREIQPVDMFPQTSHVEAVTKLIR 462 >gi|225026465|ref|ZP_03715657.1| hypothetical protein EUBHAL_00714 [Eubacterium hallii DSM 3353] gi|224956204|gb|EEG37413.1| hypothetical protein EUBHAL_00714 [Eubacterium hallii DSM 3353] Length = 382 Score = 86.7 bits (213), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 93/390 (23%), Positives = 172/390 (44%), Gaps = 47/390 (12%) Query: 2 SGTLLID-QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHD-GDDLY 59 G ID YE+QL +K +++ +F I +P HYR + + D + + Sbjct: 12 GGCQYIDLPYEEQLKKKQKNTNKLLKSFGKVKPIIGMKDPWHYRNKVHGVVAGDRHGNCF 71 Query: 60 HIMFDQQTKERMRIDYFMPGSLLINALM---IEMMATIRLEP--------LLRAKLFQID 108 +++ ++ +R+D + + + +M +M + ++ P LR L + Sbjct: 72 TGIYENRSHRVIRVDSCLIENQKADEIMNTVTSLMKSFKMRPYNEDTGYGFLRHILVRTG 131 Query: 109 YLTSQSDQAIVTLI--------YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKI 160 Y T Q +VT + + L E + + ++ R + L +K +I Sbjct: 132 YHTGQIMVVLVTASPVFPSKNNFVKALRKEHPEITTIIAN-VNNRNTSMVL---GDKQQI 187 Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYC 218 + Y+++ L G+T +R SF Q N I +L G+ G +++ Y Sbjct: 188 LYGKGYIEDVL--CGKT--FRISPKSFYQVNP-IQTEVLYNKAIEFAGLTGKERVIDAYS 242 Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278 G G +V + + V++VE+ +V A +N N V N++ + + +F M +E Sbjct: 243 GIGTIGMVASDNAGEVISVELNGDAVRDAVFNAKQNKVKNIRFYKDDAGDFMVKMASHKE 302 Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCRDLSILS 336 + +F+DPPRSG D + +++ P ++YISCNP++L RDL L+ Sbjct: 303 ------------KADVVFMDPPRSGSDKKFLDSLLRLRPKKVVYISCNPETLARDLKHLT 350 Query: 337 -TTHTIERLALFDQFPYTRHMECGVLLVRK 365 + I+ + D FP T H+E LL R+ Sbjct: 351 GNGYRIKEIQPVDMFPSTGHVEAVCLLSRR 380 >gi|28211569|ref|NP_782513.1| tRNA (uracil-5-) -methyltransferase [Clostridium tetani E88] gi|50401760|sp|Q892Z2|Y1941_CLOTE RecName: Full=Uncharacterized RNA methyltransferase CTC_01941 gi|28204010|gb|AAO36450.1| tRNA (uracil-5-) -methyltransferase [Clostridium tetani E88] Length = 456 Score = 86.7 bits (213), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 65/232 (28%), Positives = 110/232 (47%), Gaps = 31/232 (13%) Query: 142 LHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEW 201 LH + + + +K I RDY+ E L L ++ SF Q N+ E Sbjct: 245 LHTINDSLSDVVQCDKLNILYGRDYIIEDLL----GLKFKITPLSFFQTNS----KGAEK 296 Query: 202 VLAATKGIQGD-----LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV 256 + + + G+ + +LYCG G ++A +V+ +E+ + +VE+AR N N++ Sbjct: 297 LYSIVRDFIGESKSKTVFDLYCGTGTIGQIVAPEAKKVIGIELIEEAVESARENAKLNNL 356 Query: 257 NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY- 315 NN + + + + Q + +E + D+ I +DPPR G+ + V + Sbjct: 357 NNCEFI---AGDIAQVI---KEVKQKPDV---------IILDPPRPGVHPKALEYVIKFD 401 Query: 316 -PHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRK 365 P I+Y+SCNP +L DL +L + IE++ D FP T H+E V L RK Sbjct: 402 SPTIVYVSCNPKTLVEDLKVLVENGYVIEKVKGMDMFPSTPHVETVVGLRRK 453 >gi|270284909|ref|ZP_06194303.1| rRNA methyltransferase [Chlamydia muridarum Nigg] gi|270288937|ref|ZP_06195239.1| rRNA methyltransferase [Chlamydia muridarum Weiss] gi|14195332|sp|P58106|Y118_CHLMU RecName: Full=Uncharacterized RNA methyltransferase TC_0118 Length = 397 Score = 86.7 bits (213), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 66/244 (27%), Positives = 119/244 (48%), Gaps = 25/244 (10%) Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIEN 185 LLD +I + L AR +T ++ ++L++ GR+ I+ Sbjct: 171 LLDSGLPITSIFWEEKLSARNSPTTF-----RTTHLYGEQFLKQQLSIEGRSNIFHVRPR 225 Query: 186 SFTQPNAGINVHMLEWV--LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 SF QP + +++ + + G + LL+LYCG G + L+ + +++ VE+ + Sbjct: 226 SFFQPQSRQAEKIIQTIKDFISPTG-EETLLDLYCGAGTIGISLSPYVKKIIGVELVPDA 284 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 V +A+ NI N N+++ +K+F R L +DI + +DPPR G Sbjct: 285 VASAQENIQLNSA-NMEVFLEDAKQFC------RRHEHLPPLDI-------VVIDPPRCG 330 Query: 304 LDDATVG-MVQAYP-HILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGV 360 + + + +++ P I+Y+SCNP + + SIL + ++R+ DQFP+T H+E V Sbjct: 331 MQNKALKYLLRMSPKKIIYVSCNPLTQISECSILVEHGYQLQRMQPIDQFPHTHHLENVV 390 Query: 361 LLVR 364 LL R Sbjct: 391 LLER 394 >gi|70731793|ref|YP_261535.1| 23S rRNA 5-methyluridine methyltransferase [Pseudomonas fluorescens Pf-5] gi|91207808|sp|Q4K898|RUMA_PSEF5 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|68346092|gb|AAY93698.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Pseudomonas fluorescens Pf-5] Length = 450 Score = 86.7 bits (213), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 63/197 (31%), Positives = 94/197 (47%), Gaps = 35/197 (17%) Query: 178 LIYRQIENSFTQPNAGINVHM----LEWVLAATKGIQGD--LLELYCGNGNFSLVLARHF 231 L YR F Q NAG+N M LEW+ Q D +L+L+CG GNF+L LAR Sbjct: 274 LAYR--PGDFVQVNAGVNEAMVAQALEWL-----APQADERVLDLFCGLGNFALPLARQV 326 Query: 232 DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291 V+AVE V A N A+N+++N + + + A E Sbjct: 327 REVVAVEGVATMVARAAENAASNNLHNTRFFQADLSQPLSAAEWADE------------G 374 Query: 292 FKTIFVDPPRSGLDD-----ATVGMVQAYPHILYISCNPDSLCRD-LSILSTTHTIERLA 345 F + +DPPR G + AT+G + ++Y+SCNP +L RD + ++ + ++R Sbjct: 375 FSAVLLDPPRDGAFEVVRQLATLGAKR----LVYVSCNPATLARDTVELIKQGYRLKRAG 430 Query: 346 LFDQFPYTRHMECGVLL 362 + D FP T H+E L Sbjct: 431 ILDMFPQTAHVEAMALF 447 >gi|50401486|sp|Q7MHP7|RUMA_VIBVY RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase Length = 438 Score = 86.7 bits (213), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 100/382 (26%), Positives = 161/382 (42%), Gaps = 68/382 (17%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPI-----HYRMRAEFHIWHDGDDLYHIMFD 64 Y+ QLA K L Q+M F +I S P+ YR RA + D + F Sbjct: 98 YQAQLAYKQRTLLQLMKKFS--GSEILLSPPVTGLEKAYRRRARVSLMWDKKS-RQLQFG 154 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDY--------LTSQSDQ 116 + K+ +I+ +L+ L L P L+A L + L + + Sbjct: 155 FRRKQSKQIENVTQCPVLVAELEC-------LLPELKAILSHFHHPEHLGHVELVAADNG 207 Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGR 176 A++TL + L D E +LR + + L+ +++ L+R ++G Sbjct: 208 AVITLRHTGPLLD---EDVAKLRQCAEQHQATLYLMPASDQ----LER--------ISGE 252 Query: 177 TLIYRQI-------ENSFTQPNAGIN----VHMLEWVLAATKGIQGDLLELYCGNGNFSL 225 Y++I N+F Q N +N V LEW+ + +L+L+CG GNFSL Sbjct: 253 APYYQEIGFKVPFEPNNFIQVNQKVNQQMVVQALEWLDPQSSD---RVLDLFCGLGNFSL 309 Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285 +A V VE V+ A N + N +NN + + E++F Sbjct: 310 PIASKAKSVTGVEGVDDMVQKAALNASLNQINNAQFFHAN---------LEQDF---VGQ 357 Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRD-LSILSTTHTIE 342 S +F I +DP R+G + V A ++Y+SCNP +L RD S+L + + Sbjct: 358 PWASEKFDKILLDPARAGA-SGIIEQVSALGAKRVVYVSCNPATLARDSQSLLEQGYRLT 416 Query: 343 RLALFDQFPYTRHMECGVLLVR 364 +L + D FPYT H+E L + Sbjct: 417 KLGMLDMFPYTSHLESMALFEK 438 >gi|317049303|ref|YP_004116951.1| TrmA family RNA methyltransferase [Pantoea sp. At-9b] gi|316950920|gb|ADU70395.1| RNA methyltransferase, TrmA family [Pantoea sp. At-9b] Length = 438 Score = 86.7 bits (213), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 61/215 (28%), Positives = 102/215 (47%), Gaps = 32/215 (14%) Query: 165 DYVDERLTVAGRTLIYRQIE-------NSFTQPNAGINVHM----LEWVLAATKGIQGD- 212 D D+ + T YR + F Q N G+N M ++W+ +Q + Sbjct: 240 DGSDDLTALQSDTPFYRSFDLQLTFSPQDFIQVNDGVNQQMVAKAIDWL-----DLQPED 294 Query: 213 -LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271 +L+L+CG GNF+L + + + + VE V A YN +NN+K VR + Sbjct: 295 RVLDLFCGMGNFTLPIGKFVENAVGVEGVAALVRQAAYNA---DLNNLKNVRFFQHNLEE 351 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH-ILYISCNPDSLCR 330 + R+ + F + +DP R+G +V+ P ++Y+SCNP +L R Sbjct: 352 DVARQ---------PWAAQGFNKVLLDPARAGAAGVMSHIVKLAPQRVVYVSCNPTTLAR 402 Query: 331 DL-SILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D ++LS + +ER+A+ D FP+T H+E VL + Sbjct: 403 DSQTLLSAGYHLERVAMLDMFPHTSHLESMVLFSK 437 >gi|330839061|ref|YP_004413641.1| RNA methyltransferase, TrmA family [Selenomonas sputigena ATCC 35185] gi|329746825|gb|AEC00182.1| RNA methyltransferase, TrmA family [Selenomonas sputigena ATCC 35185] Length = 458 Score = 86.7 bits (213), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 49/155 (31%), Positives = 76/155 (49%), Gaps = 15/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G +L LA+ RV +EI KP++E A+ N NH+ N + + E Sbjct: 312 VIDAYCGTGTITLFLAQKAHRVYGIEIVKPAIEDAKKNARDNHIKNAAFLVGDATELMPR 371 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330 + E + R I VDPPR+G + + I+Y+SCNP +L R Sbjct: 372 LCHE------------NIRPHVIVVDPPRAGCTETVLKTFAGMRPDRIVYVSCNPATLAR 419 Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364 DL+IL+ ++ + D FP T H+E L+R Sbjct: 420 DLAILAKLGYSAREIQPVDMFPQTSHVEAVTKLIR 454 >gi|330012192|ref|ZP_08307325.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Klebsiella sp. MS 92-3] gi|328533894|gb|EGF60562.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Klebsiella sp. MS 92-3] Length = 434 Score = 86.7 bits (213), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 59/188 (31%), Positives = 92/188 (48%), Gaps = 27/188 (14%) Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 F Q N G+N M LEW+ + +L+L+CG GNF+L LA V+ VE Sbjct: 263 FIQVNDGVNQQMVRTALEWLDLRP---EDRVLDLFCGMGNFTLPLATRAAHVVGVEGVPA 319 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDP 299 VE R N A N ++NV + +E D+ ++ F + + P Sbjct: 320 LVEKGRENAARNGLSNVTFFHENLEE---------------DVTRQAWAKHGFDKVLLAP 364 Query: 300 PRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHME 357 R+G +++ P ++Y+SCNP +L RD ++L + I+RLA+ D FP+T H+E Sbjct: 365 ARAGAPGVMPHIIKLAPRRVVYVSCNPATLARDSETLLQAGYQIQRLAMLDMFPHTGHLE 424 Query: 358 CGVLLVRK 365 VL R+ Sbjct: 425 SMVLFERR 432 >gi|303273590|ref|XP_003056155.1| predicted protein [Micromonas pusilla CCMP1545] gi|226462239|gb|EEH59531.1| predicted protein [Micromonas pusilla CCMP1545] Length = 549 Score = 86.7 bits (213), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 66/216 (30%), Positives = 103/216 (47%), Gaps = 19/216 (8%) Query: 171 LTVAGRTLIYRQIENSFTQPN---AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVL 227 +++ R +++ SF Q N A I V +E A T +L+L+CG G F L L Sbjct: 326 ISITLRGVVFALSVKSFFQTNTKQAEILVESVEEACALTGENTETILDLFCGVGTFGLCL 385 Query: 228 ARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDI 287 A V EI +VE A+ N AN + N + + +++M + K I Sbjct: 386 ASKARHVYGCEIVPEAVEDAKRNAVANRIENATFWQADLAQLSESMLCADSKSMSKSIVF 445 Query: 288 HS--YRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILS----TTH 339 R + VDP RSG+D V ++++ P I+Y+SCNP + RD+++L T Sbjct: 446 GKDVVRPDVVIVDPARSGMDVTLVAILRSLGIPRIVYVSCNPATQARDVALLCDVSDNTQ 505 Query: 340 TIERLALF--------DQFPYTRHMECGVLLVRKPS 367 + + LA + D FP+T H+E V+L R PS Sbjct: 506 SGDLLAKYRLISCIPVDLFPHTPHVENIVVLERVPS 541 >gi|87118650|ref|ZP_01074549.1| 23S rRNA (uracil-5-)-methyltransferase [Marinomonas sp. MED121] gi|86166284|gb|EAQ67550.1| 23S rRNA (uracil-5-)-methyltransferase [Marinomonas sp. MED121] Length = 441 Score = 86.7 bits (213), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 62/216 (28%), Positives = 107/216 (49%), Gaps = 30/216 (13%) Query: 164 RDYVDERLTVAGRTLIYRQIEN--------SFTQPNAGINVHM----LEWVLAATKGIQG 211 +D +++ +L + Q+EN F Q N +NV M L+W+ + Q Sbjct: 241 QDPAQDKVKCETDSLRHYQVENLTIHYHPQDFIQVNQRMNVKMVAQALQWLALSE---QD 297 Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271 +L+L+CG GNFSL +A+ ++V+ VE+ V A N N + NV + + T+ Sbjct: 298 KVLDLFCGAGNFSLAMAKTAEKVVGVEVQAQMVRNAERNAERNGLKNVTFI---GADLTK 354 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCR 330 +R E LK F +DPPR+G + +++ ILY+SC+ +L R Sbjct: 355 TVRNE----ALKK------GFSKALLDPPRAGAFEFLPSLIKLKIDTILYVSCDAATLAR 404 Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRK 365 D L + + ++R+++ + FP T H+E +LL +K Sbjct: 405 DAEFLVAHGYQVKRVSMMEMFPQTAHVETMMLLQKK 440 >gi|37681006|ref|NP_935615.1| 23S rRNA 5-methyluridine methyltransferase [Vibrio vulnificus YJ016] gi|37199756|dbj|BAC95586.1| SAM-dependent methyltransferase [Vibrio vulnificus YJ016] Length = 440 Score = 86.7 bits (213), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 100/382 (26%), Positives = 161/382 (42%), Gaps = 68/382 (17%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPI-----HYRMRAEFHIWHDGDDLYHIMFD 64 Y+ QLA K L Q+M F +I S P+ YR RA + D + F Sbjct: 100 YQAQLAYKQRTLLQLMKKFS--GSEILLSPPVTGLEKAYRRRARVSLMWDKKS-RQLQFG 156 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDY--------LTSQSDQ 116 + K+ +I+ +L+ L L P L+A L + L + + Sbjct: 157 FRRKQSKQIENVTQCPVLVAELEC-------LLPELKAILSHFHHPEHLGHVELVAADNG 209 Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGR 176 A++TL + L D E +LR + + L+ +++ L+R ++G Sbjct: 210 AVITLRHTGPLLD---EDVAKLRQCAEQHQATLYLMPASDQ----LER--------ISGE 254 Query: 177 TLIYRQI-------ENSFTQPNAGIN----VHMLEWVLAATKGIQGDLLELYCGNGNFSL 225 Y++I N+F Q N +N V LEW+ + +L+L+CG GNFSL Sbjct: 255 APYYQEIGFKVPFEPNNFIQVNQKVNQQMVVQALEWLDPQSSD---RVLDLFCGLGNFSL 311 Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285 +A V VE V+ A N + N +NN + + E++F Sbjct: 312 PIASKAKSVTGVEGVDDMVQKAALNASLNQINNAQFFHAN---------LEQDF---VGQ 359 Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDL-SILSTTHTIE 342 S +F I +DP R+G + V A ++Y+SCNP +L RD S+L + + Sbjct: 360 PWASEKFDKILLDPARAGA-SGIIEQVSALGAKRVVYVSCNPATLARDSQSLLEQGYRLT 418 Query: 343 RLALFDQFPYTRHMECGVLLVR 364 +L + D FPYT H+E L + Sbjct: 419 KLGMLDMFPYTSHLESMALFEK 440 >gi|261342212|ref|ZP_05970070.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterobacter cancerogenus ATCC 35316] gi|288315546|gb|EFC54484.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterobacter cancerogenus ATCC 35316] Length = 432 Score = 86.7 bits (213), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 58/180 (32%), Positives = 91/180 (50%), Gaps = 17/180 (9%) Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 F Q N G+N M+ LA Q D +L+L+CG GNF+L LA+ V+ VE + V Sbjct: 263 FIQVNDGVNQQMIATALAWLDVQQSDRVLDLFCGMGNFTLPLAQKAACVVGVEGVEALVA 322 Query: 246 AARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 + N N + NV + + TQ + F++ I +DP R+G Sbjct: 323 KGQENARENGLQNVTFFHQNLEDDVTQQPWARQGFDK-------------ILLDPARAGA 369 Query: 305 DDATVGMVQAYPH-ILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHMECGVLL 362 +++ P ++Y+SCNP +L RD +++S + I+RLA+ D FP+T H+E VL Sbjct: 370 PGVMQHIIKLAPKRVVYVSCNPATLARDSEALVSGGYQIQRLAMLDMFPHTGHLESIVLF 429 >gi|261253890|ref|ZP_05946463.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Vibrio orientalis CIP 102891] gi|260937281|gb|EEX93270.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Vibrio orientalis CIP 102891] Length = 439 Score = 86.7 bits (213), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 56/195 (28%), Positives = 101/195 (51%), Gaps = 19/195 (9%) Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFD 232 AG T+ + N+F Q N +N M+ L + + D +L+L+CG GNFSL +A+ Sbjct: 259 AGVTIPFE--PNNFIQVNQKVNQSMVAQALDWLELDEHDCVLDLFCGLGNFSLPMAQKVK 316 Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNRLKDIDIHSYR 291 +V+ VE V+ A+ N N ++N + + ++F+ + + +F++ Sbjct: 317 QVIGVEGVDAMVDKAQDNATVNGISNAAFHQANLEQDFSGQLWAQEKFDK---------- 366 Query: 292 FKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRD-LSILSTTHTIERLALFDQ 349 I +DP R+G + Q ++Y+SCNP +L RD S+L+ + +++L + D Sbjct: 367 ---ILLDPARAGASGIIEHISQLGASRVVYVSCNPATLARDSQSLLNQGYKLQKLGMLDM 423 Query: 350 FPYTRHMECGVLLVR 364 FP+T H+E L V+ Sbjct: 424 FPHTSHLESMALFVK 438 >gi|163755043|ref|ZP_02162164.1| hypothetical protein KAOT1_03477 [Kordia algicida OT-1] gi|161325110|gb|EDP96438.1| hypothetical protein KAOT1_03477 [Kordia algicida OT-1] Length = 470 Score = 86.7 bits (213), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 64/215 (29%), Positives = 102/215 (47%), Gaps = 24/215 (11%) Query: 163 DRDYVDERLTVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGDLL 214 D Y E + AGR I+ ++E SF Q N+ + L + G+QGD L Sbjct: 267 DTIYDQEVICYAGRDHIFEEMEGLQFKINAKSFYQTNSD-QAYELYKITRDFAGLQGDEL 325 Query: 215 --ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +LY G G + +++ +V+ VE ++EAA+ N A N++ N + K+ A Sbjct: 326 VYDLYTGTGTIAQFVSKKAKKVIGVESVPEAIEAAKENAAFNNITNTEFFVGDMKKVFNA 385 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCR 330 EF I+ H I DPPR G+ V + A ++Y+SCN + R Sbjct: 386 -----EF-----IETHGTP-DVIITDPPRDGMHADVVQQILNIAPKKVVYVSCNSATQAR 434 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 DL+++ T+ + ++ D FP T H+E VLL R+ Sbjct: 435 DLALMDATYKVTKVQAVDMFPQTHHIENVVLLERR 469 >gi|153855592|ref|ZP_01996708.1| hypothetical protein DORLON_02726 [Dorea longicatena DSM 13814] gi|149752013|gb|EDM61944.1| hypothetical protein DORLON_02726 [Dorea longicatena DSM 13814] Length = 363 Score = 86.7 bits (213), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 51/157 (32%), Positives = 86/157 (54%), Gaps = 17/157 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G L+ A++ +V+ VE+ K +V+ AR N N + N +I + F Sbjct: 219 VIDAYCGTGTIGLIAAKNAKKVIGVELNKDAVKDARINAKENGITNAEIYAGDAGRFMVD 278 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330 M + N+ D+ +F+DPPR+G D+ + +++ P ++Y+SCNP++L R Sbjct: 279 MASK---NQKADV---------VFMDPPRAGSDEKFLSSVIKLGPKRVVYVSCNPETLAR 326 Query: 331 DLSILSTTHTIERLAL--FDQFPYTRHMECGVLLVRK 365 DL L T H + + + D FP+ H+E V LVRK Sbjct: 327 DLKYL-TRHGYQAVKIQPVDNFPFCDHIETVVKLVRK 362 >gi|167623152|ref|YP_001673446.1| 23S rRNA 5-methyluridine methyltransferase [Shewanella halifaxensis HAW-EB4] gi|226725389|sp|B0TK00|RUMA_SHEHH RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|167353174|gb|ABZ75787.1| RNA methyltransferase, TrmA family [Shewanella halifaxensis HAW-EB4] Length = 445 Score = 86.7 bits (213), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 91/341 (26%), Positives = 145/341 (42%), Gaps = 54/341 (15%) Query: 42 HYRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIR--LEPL 99 HYR RA W FD+ TK I S + + I+ A + L L Sbjct: 135 HYRRRARLATW----------FDKNTK---HISLGFRASSSSDVVEIQSCAVLAEPLSAL 181 Query: 100 LRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTK 159 + F ++ L+ + V L D +R+ AL + K + +L+ ANK + Sbjct: 182 IPDLAFMLNQLSGKKALGHVELTQA----DNGNFVVLRVTKAL-SDKDKARLVEFANKHQ 236 Query: 160 ICL---DRDYVDERLTVAGRTLIYRQIEN---------SFTQPNAGINVHML----EWVL 203 + + D D E L AG Y +N +F Q NA +N M+ EW+ Sbjct: 237 VIVLLQDDDAQCEHLNGAGEQPYYGFDDNQVKLNFSPGNFIQVNAQVNQAMVSQAVEWL- 295 Query: 204 AATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVR 263 + +L+L+CG GNFSL LA+ V+ VE + VE AR N + ++ V Sbjct: 296 --SPKADERVLDLFCGIGNFSLPLAKDGAEVIGVEGVQAMVEQARINAKQSGLDKVSFYH 353 Query: 264 MSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHIL-YIS 322 + + + +E ++ + +DP R+G ++ + + P L Y+S Sbjct: 354 A---DLSADLSKEPWLGKV----------DKMLIDPARAGAYESMQSLKKLKPKALVYVS 400 Query: 323 CNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVLL 362 CNP SL RD IL + ++++ L D FP T H+E L Sbjct: 401 CNPASLARDSEVILKQGYQLKKIGLVDMFPQTHHLESMALF 441 >gi|145632582|ref|ZP_01788316.1| 23S rRNA (uracil-5-)-methyltransferase [Haemophilus influenzae 3655] gi|144986777|gb|EDJ93329.1| 23S rRNA (uracil-5-)-methyltransferase [Haemophilus influenzae 3655] Length = 438 Score = 86.7 bits (213), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 57/183 (31%), Positives = 88/183 (48%), Gaps = 17/183 (9%) Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 F Q N +N M+ L + Q D +L+L+CG GNF+L+LA+ + +E V+ Sbjct: 269 FIQVNRALNERMVNTALDWLELNQQDCVLDLFCGMGNFTLLLAKRVKSAVGIEGVFEMVQ 328 Query: 246 AARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 A N N + N++ + + F + + FN+ I +DPPRSG Sbjct: 329 KAAQNATRNQIKNIEFFQADLDQSFVEQPWANQSFNK-------------ILLDPPRSGA 375 Query: 305 DDATVGMVQ-AYPHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLL 362 A + + ILY+SCNP +L RD IL + IE+ ++ D FP+T H+E L Sbjct: 376 AFALNALCELKSEKILYVSCNPATLVRDAEILRDFGYKIEKSSVIDMFPHTGHLESITLF 435 Query: 363 VRK 365 K Sbjct: 436 TTK 438 >gi|325847814|ref|ZP_08170036.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325480832|gb|EGC83885.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 548 Score = 86.3 bits (212), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 64/269 (23%), Positives = 122/269 (45%), Gaps = 43/269 (15%) Query: 100 LRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTK 159 +R LF + L ++++ IV+ IYH + D L DA+ + + + Sbjct: 225 MRRDLFAHNLLNARTNGRIVS-IYHVINDS--------LSDAV-----------KVDSME 264 Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYC 218 + + Y++E + L ++ SF QPN + + + A ++L+LY Sbjct: 265 LLFGKKYIEENMN----DLKFQISPFSFFQPNVFTAEKIYQKAIELANVDKNKNVLDLYS 320 Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278 G G + + A+ ++ + +EI + +VE A N N + N+ + Sbjct: 321 GTGTITQLFAKAANKAVGIEIVEEAVEKAFDNAKENQIENINFIAG-------------- 366 Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSI-L 335 + L+ ID+ ++ + +DPPR G++ + + +YISCNP + RD+ I + Sbjct: 367 -DVLEKIDLVKGKYDIVVLDPPREGINPKAIKKIMDINPKEFVYISCNPKTQVRDIEIFM 425 Query: 336 STTHTIERLALFDQFPYTRHMECGVLLVR 364 + +E+ FDQFP +RH+E LL + Sbjct: 426 ENGYKVEKYQAFDQFPRSRHVETVALLSK 454 >gi|293571847|ref|ZP_06682863.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium E980] gi|291608101|gb|EFF37407.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium E980] Length = 457 Score = 86.3 bits (212), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 59/214 (27%), Positives = 105/214 (49%), Gaps = 20/214 (9%) Query: 155 ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL- 213 +K K+ DRDY++++L G+T YR SF Q N ++ + + + + D+ Sbjct: 258 GDKEKVLYDRDYIEDQLL--GKT--YRISAKSFYQVNTQQAEYLYQTAIKFAELDKKDIV 313 Query: 214 LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273 ++ Y G G L LA D+V +E+ ++E A++N N + NV + + Sbjct: 314 IDAYSGIGTIGLSLADKVDKVYGMEVIPEAIEDAQFNALNNKIENV---------YYEVG 364 Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCRD 331 + E+ + ++ I + I VDPPR GLD + ++ P I+YISCNP + RD Sbjct: 365 KAEKVMKKWQEKGI---KPSVIVVDPPRKGLDHHFIESAIEMSPERIVYISCNPATFARD 421 Query: 332 LSILSTT-HTIERLALFDQFPYTRHMECGVLLVR 364 + + + ++++ D FP T H+E V+ Sbjct: 422 AKLFAEAGYAVKKVQPVDLFPQTHHIELVASFVK 455 >gi|291521011|emb|CBK79304.1| 23S rRNA m(5)U-1939 methyltransferase [Coprococcus catus GD/7] Length = 463 Score = 86.3 bits (212), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 72/262 (27%), Positives = 123/262 (46%), Gaps = 28/262 (10%) Query: 110 LTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDE 169 +T+ ++ +T + RLLD + R+ +H + + ++++T+I +DY E Sbjct: 225 VTTSQEECDLTELTQRLLD---LQLEGRIVGIMHIINDTLADVVQSDETRILYGQDYFYE 281 Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL--LELYCGNGNFSLVL 227 + L ++ SF Q N + +L + + G D+ +LY G G + +L Sbjct: 282 HIL----GLKFKISTFSFFQTNT-LGAELLYDIARSYIGDTKDMTVFDLYSGTGTIAQIL 336 Query: 228 ARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDI 287 A +V+ VEI + +VEAA+ N N ++N EF + LK +D Sbjct: 337 AAVAKKVVGVEIVEEAVEAAKVNAGLNQLDNC--------EFIAG-------DVLKVLDT 381 Query: 288 HSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSIL-STTHTIERL 344 + I +DPPR G+ + + Y P+++YISC P SL RDL +L + +++ Sbjct: 382 IEDKPDYIVLDPPRDGIHPKALDKIIDYQVPNMVYISCKPTSLARDLGVLIERGYKVKKT 441 Query: 345 ALFDQFPYTRHMECGVLLVRKP 366 D FP T H E LL +KP Sbjct: 442 HCVDMFPGTVHCETVCLLSKKP 463 >gi|148264199|ref|YP_001230905.1| RNA methyltransferase [Geobacter uraniireducens Rf4] gi|146397699|gb|ABQ26332.1| 23S rRNA m(5)U-1939 methyltransferase [Geobacter uraniireducens Rf4] Length = 439 Score = 86.3 bits (212), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 56/183 (30%), Positives = 89/183 (48%), Gaps = 17/183 (9%) Query: 184 ENSFTQPNAGINVHMLE--WVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241 + SF+Q N N+H+++ W A G + +L+LYCGNGNF++ LA ++ E Sbjct: 267 KGSFSQVNYQQNLHLIQLVWNWAELTGKE-KVLDLYCGNGNFTIPLAGFAQSMVGFEEFG 325 Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301 S+ AR N +N+V N + + +K + F + +DPPR Sbjct: 326 QSINDARQNCESNNVTNAEFYCSDATL------------EVKKLAAAGESFDVVLLDPPR 373 Query: 302 SGLDDATVGMVQAYPH-ILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECG 359 G + + PH ILY+SC+P +L RD+ IL + + + + D FP T H+E Sbjct: 374 CGAAEVVSRIHAVSPHFILYVSCDPATLARDVDILKKSNYEVVKCQPVDMFPQTYHIESV 433 Query: 360 VLL 362 LL Sbjct: 434 TLL 436 >gi|295097348|emb|CBK86438.1| 23S rRNA m(5)U-1939 methyltransferase [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 432 Score = 86.3 bits (212), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 59/180 (32%), Positives = 90/180 (50%), Gaps = 17/180 (9%) Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 F Q N G+N M+ LA D +L+L+CG GNF+L LAR V+ VE + V Sbjct: 263 FIQVNDGVNQQMVANALAWLDVQPTDRVLDLFCGMGNFTLPLARKAASVVGVEGVEALVV 322 Query: 246 AARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 + N N + NV + + TQ ++ F++ I +DP R+G Sbjct: 323 KGQENAQQNGLQNVTFFHQNLEDDVTQQPWAKQGFDK-------------ILLDPARAGA 369 Query: 305 DDATVGMVQAYPH-ILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHMECGVLL 362 +++ P ++Y+SCNP +L RD ++LS + I RLA+ D FP+T H+E VL Sbjct: 370 PGVMQHIIKLAPERVVYVSCNPATLARDSEALLSGGYQIRRLAMLDMFPHTGHLESMVLF 429 >gi|326791042|ref|YP_004308863.1| RNA methyltransferase, TrmA family [Clostridium lentocellum DSM 5427] gi|326541806|gb|ADZ83665.1| RNA methyltransferase, TrmA family [Clostridium lentocellum DSM 5427] Length = 452 Score = 86.3 bits (212), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 88/353 (24%), Positives = 158/353 (44%), Gaps = 54/353 (15%) Query: 40 PIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL 99 P HYR +A++ I +Q +++ +F P S + L + + E + Sbjct: 126 PYHYRNKAQYPI-------------RQINGKVQTGFFAPRSHQLIPLETCYIQDPKKEAI 172 Query: 100 LRAKL-FQIDYLTSQSDQAIVT-LIYHRLLDDAWRE-----CAIRLRDAL-HARKYQIQL 151 ++A L F Y S D+ T L+ H ++ + C + L HA ++ + Sbjct: 173 MKAVLAFLEKYKISIYDEEKHTGLVRHLMIKTGYHTEEMMVCLVINGPKLPHADEFVKAI 232 Query: 152 IGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFT----------QPNAGINVHMLEW 201 A T I L++ ++++ T+ G + EN+ P + V+ + Sbjct: 233 KAVAPVTSIILNQ-HLEKSNTILGNSCTVLDGENAIIDYIGDLQFKISPLSFFQVNPQQT 291 Query: 202 VLAATKGIQ-----GD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAAN 254 + TK ++ GD + + YCG G+ SL LA+ +V VEI ++E A+ N A N Sbjct: 292 EVLYTKALEYAELTGDEIVWDAYCGIGSISLFLAQKAKKVYGVEIIPEAIENAKENAALN 351 Query: 255 HVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQ 313 H+ N + ++E M + TI VDPPR G D + +++ Sbjct: 352 HITNAEFYVGKAEEVIPQMYEQ------------GIVADTIVVDPPRKGCDSKLLETLIK 399 Query: 314 AYPH-ILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 P+ I+Y+SC+P +L RDL+ +++ + ++++ D FP T H+E V L R Sbjct: 400 MSPNKIVYVSCDPATLARDLAYLVAEGYQVDKVQPVDMFPQTTHVETVVKLSR 452 >gi|256003527|ref|ZP_05428517.1| RNA methyltransferase, TrmA family [Clostridium thermocellum DSM 2360] gi|281418309|ref|ZP_06249329.1| RNA methyltransferase, TrmA family [Clostridium thermocellum JW20] gi|255992551|gb|EEU02643.1| RNA methyltransferase, TrmA family [Clostridium thermocellum DSM 2360] gi|281409711|gb|EFB39969.1| RNA methyltransferase, TrmA family [Clostridium thermocellum JW20] gi|316941405|gb|ADU75439.1| RNA methyltransferase, TrmA family [Clostridium thermocellum DSM 1313] Length = 455 Score = 86.3 bits (212), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 50/155 (32%), Positives = 78/155 (50%), Gaps = 15/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + +LYCG G SL L++ R+ VE+ + +V+ A N N V N + + +++ Sbjct: 310 VFDLYCGIGTISLFLSKKAKRIYGVEVVEAAVKDAWENAKVNGVENAEFIVGEAEKVIPE 369 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330 M + R + VDPPR G D+A + +V P I+Y+SCNP +L R Sbjct: 370 MYEK------------GVRADVVVVDPPRKGCDEAVLKTLVDMKPERIVYVSCNPATLAR 417 Query: 331 DLSILSTTH-TIERLALFDQFPYTRHMECGVLLVR 364 DL L+ + + D FP+T H+EC VL+ R Sbjct: 418 DLKYLAEGGFEVREVQPVDMFPWTYHVECVVLMSR 452 >gi|237729748|ref|ZP_04560229.1| 23S rRNA 5-methyluridine methyltransferase [Citrobacter sp. 30_2] gi|226908354|gb|EEH94272.1| 23S rRNA 5-methyluridine methyltransferase [Citrobacter sp. 30_2] Length = 432 Score = 86.3 bits (212), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 60/184 (32%), Positives = 90/184 (48%), Gaps = 21/184 (11%) Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 F Q N G+N M LEW+ + +L+L+CG GNF+L LA V+ VE Sbjct: 263 FIQVNEGVNQQMVARALEWLDVQP---EDRVLDLFCGMGNFTLPLATRAASVVGVEGVPA 319 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302 VE R N N ++NV + +E R+ N F + +DP R+ Sbjct: 320 LVEKGRENALNNGLHNVTFFHENLEE--DVTRQPWAKN----------GFDKVLLDPARA 367 Query: 303 GLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHMECGV 360 G +++ P ++Y+SCNP +L RD ++L+ + I RLA+ D FP+T H+E V Sbjct: 368 GAAGVMQHIIKLEPIRVVYVSCNPATLARDSDALLNAGYAIRRLAMLDMFPHTGHLESMV 427 Query: 361 LLVR 364 L R Sbjct: 428 LFER 431 >gi|323699039|ref|ZP_08110951.1| RNA methyltransferase, TrmA family [Desulfovibrio sp. ND132] gi|323458971|gb|EGB14836.1| RNA methyltransferase, TrmA family [Desulfovibrio desulfuricans ND132] Length = 460 Score = 86.3 bits (212), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 66/229 (28%), Positives = 102/229 (44%), Gaps = 21/229 (9%) Query: 142 LHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEW 201 +H+ + + L K L V E + RT+ Y N+F Q N + Sbjct: 248 VHSSRARRSLAATGEKAVFRLGARTVTEEVAHGDRTVRYHLGPNAFFQTNTAGAGELFGT 307 Query: 202 V--LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259 V G++ +L+LYCG G + LA RV+ VE+++ +V A + N + N Sbjct: 308 VREFCGLTGVE-TVLDLYCGCGAIGIFLADQARRVVGVEVSEEAVSKAWASAKLNKLTNC 366 Query: 260 KIVRMSSKEFTQA-MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG--MVQAYP 316 EFT A + L D+ + VDPPR+G+ ++T + A Sbjct: 367 --------EFTAASLDSPAALKGLPKADV-------LVVDPPRAGIHESTAQAILTLAPK 411 Query: 317 HILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 IL +SC+P +L RD+ S +T+ R D FP+T H+E LL RK Sbjct: 412 KILAVSCDPTTLARDVKRFSEHYTLTRARAVDMFPHTHHIETVTLLERK 460 >gi|262374293|ref|ZP_06067569.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Acinetobacter junii SH205] gi|262310851|gb|EEY91939.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Acinetobacter junii SH205] Length = 469 Score = 86.3 bits (212), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 61/191 (31%), Positives = 96/191 (50%), Gaps = 32/191 (16%) Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLAR---HFDRVLAVEIAKP 242 FTQ N+ +N M++ +G+ +L+L+CG GNFSL LAR RV+ VE + Sbjct: 286 FTQVNSHVNARMVQLACELLDLKEGERVLDLFCGLGNFSLPLARCVGETGRVIGVEASDE 345 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDP 299 VE A N AN++ F+Q + KD HS+ F + +DP Sbjct: 346 MVERATENAQANYLTQASF-------FSQDL--------TKDFSHHSWAKQGFDALLIDP 390 Query: 300 PRSGLDDATVGMVQAYPH-----ILYISCNPDSLCRDLSILST-THTIERLALFDQFPYT 353 PRSG + ++Q P+ I+Y+SCNP +L RD +L+ + +++ A+ D F +T Sbjct: 391 PRSGAYE----VMQYVPNFGAKRIVYVSCNPSTLARDAGVLAQYGYQLKKAAVMDMFTHT 446 Query: 354 RHMECGVLLVR 364 H+E L + Sbjct: 447 EHVESIALFEK 457 >gi|291524312|emb|CBK89899.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Eubacterium rectale DSM 17629] Length = 418 Score = 86.3 bits (212), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 46/155 (29%), Positives = 81/155 (52%), Gaps = 15/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G ++ A++ V+ VE+ + ++ A N N + N++ + +F Sbjct: 276 VIDAYCGTGTIGIIAAKNAGEVIGVELNRDAIRDAVTNAKRNDIRNIRFYNDDAGKFMVE 335 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCR 330 M + E + + +DPPR+G D+A + V A ++Y+SC P++L R Sbjct: 336 MAQNGE------------KADVVIMDPPRTGSDEAFLSSVVKLAPERVVYVSCGPETLAR 383 Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364 DL L+ +T++R +D FPYT H+E VLL R Sbjct: 384 DLKYLTKHGYTVKRATPYDCFPYTEHIETVVLLCR 418 >gi|303234202|ref|ZP_07320848.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Finegoldia magna BVS033A4] gi|302494743|gb|EFL54503.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Finegoldia magna BVS033A4] Length = 442 Score = 86.3 bits (212), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 62/204 (30%), Positives = 92/204 (45%), Gaps = 20/204 (9%) Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFS 224 Y E LT L +R SF QPN + L + G ++ +LYCG G + Sbjct: 255 YGKEYLTEKINGLEFRISPFSFFQPNPAQAEQIYNRALELAGDLSGKNVYDLYCGTGTIA 314 Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284 + A+ + V+ VEI +VE A+ N N + N K + F + + + KD Sbjct: 315 QIFAKKSESVIGVEIVAEAVEKAQENAKLNGLTNTKFICDDCLNFMEKVEK-------KD 367 Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCRDL-SILSTTHTI 341 + + +DPPR G+ + ++ P +YISCNP + DL + + I Sbjct: 368 V---------VVLDPPRDGIHPKAIDRLIDINPDKFIYISCNPITQRMDLDKFIEKGYEI 418 Query: 342 ERLALFDQFPYTRHMECGVLLVRK 365 + L FDQFP T H E VLL RK Sbjct: 419 KSLEFFDQFPRTYHCEAVVLLSRK 442 >gi|150391401|ref|YP_001321450.1| RNA methyltransferase [Alkaliphilus metalliredigens QYMF] gi|149951263|gb|ABR49791.1| RNA methyltransferase, TrmA family [Alkaliphilus metalliredigens QYMF] Length = 451 Score = 86.3 bits (212), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 61/233 (26%), Positives = 113/233 (48%), Gaps = 25/233 (10%) Query: 137 RLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINV 196 +L +LH + + ++++T + + +DY E L L ++ SF Q N+ + Sbjct: 239 KLVGSLHTFNDNLADMVQSDRTDVLIGQDYFSEELL----GLRFKISAFSFFQTNS-LGA 293 Query: 197 HMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAAN 254 L ++ G D + +LYCG G ++A+ +V+ +EI + +V AA N N Sbjct: 294 EKLYSIVRDFVGQADDQVVFDLYCGTGTIGQIVAQKAKKVIGIEIVEDAVTAANENAKLN 353 Query: 255 HVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA 314 + N + K ++ +E N DI I +DPPR+G+ A + + Sbjct: 354 GLTNCHFIAGDVK------KKIKELNDKPDI---------IILDPPRAGIHAAALQDIID 398 Query: 315 Y--PHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364 + I+Y+SCNP S+ +DL++L + ++++ D FP+T H+E LL + Sbjct: 399 FNTEKIVYVSCNPKSMVKDLAMLEAHGYQVKKVKCMDMFPHTPHVEAVTLLTK 451 >gi|22298485|ref|NP_681732.1| putative RNA methyltransferase [Thermosynechococcus elongatus BP-1] gi|50401571|sp|Q8DKB7|Y942_THEEB RecName: Full=Uncharacterized RNA methyltransferase tlr0942 gi|22294665|dbj|BAC08494.1| tlr0942 [Thermosynechococcus elongatus BP-1] Length = 449 Score = 86.3 bits (212), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 64/216 (29%), Positives = 103/216 (47%), Gaps = 34/216 (15%) Query: 163 DRDYVDERLTVAGRTLIYRQI--------ENSFTQPNAGINVHML----EWVLAATKGIQ 210 +R + DE +AGR ++ ++ +F Q N ++ +W+ A G Q Sbjct: 249 NRIFGDETQVLAGRPYLWEEMAGVRFQIASTTFFQVNTAQAEQLVTTLRDWI--APTG-Q 305 Query: 211 GDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270 L++LYCG G SL LA V+ VE+ SV+ A N N +NN V ++E+ Sbjct: 306 ERLVDLYCGVGTLSLPLAGAVAEVIGVEVHSASVQQAIANAQHNGINNAHFVCAKAEEWL 365 Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSL 328 +++ D+ + +DPPR G D A + + P +LY+SC+P +L Sbjct: 366 P------RYDQAVDV---------LILDPPRKGCDRAVLDAILHNCPPRLLYVSCHPATL 410 Query: 329 CRDLSILSTTHT--IERLALFDQFPYTRHMECGVLL 362 RDL+ L +T T + ++ D FP T H+E LL Sbjct: 411 ARDLAHLCSTGTYQLAKIQPLDMFPQTAHVETIALL 446 >gi|253681766|ref|ZP_04862563.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum D str. 1873] gi|253561478|gb|EES90930.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum D str. 1873] Length = 494 Score = 86.3 bits (212), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 48/156 (30%), Positives = 81/156 (51%), Gaps = 15/156 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + + YCG G SL L+++ +V VEI + +++ A+ N N+V+NV+ + S+E Sbjct: 350 VFDAYCGTGTISLFLSKNAKKVYGVEIVEDAIKNAKINAKENNVDNVEFIVGKSEEVIPN 409 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330 + ++ + + VDPPR G D A + + I+Y+SC+P +L R Sbjct: 410 LIKQ------------GIKADVVVVDPPRKGCDKALLDAIGNMRPDRIVYVSCDPGTLAR 457 Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVRK 365 DL+IL + + + D FP T H+E VLL +K Sbjct: 458 DLAILDELGYETKEVQPVDMFPQTGHVENVVLLTKK 493 >gi|146283009|ref|YP_001173162.1| 23S rRNA 5-methyluridine methyltransferase [Pseudomonas stutzeri A1501] gi|145571214|gb|ABP80320.1| probable RNA methyltransferase [Pseudomonas stutzeri A1501] Length = 450 Score = 86.3 bits (212), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 70/230 (30%), Positives = 103/230 (44%), Gaps = 27/230 (11%) Query: 148 QIQLIGRANKTKICLDRDYVDERLTVAGRTLIYR----QIE-----NSFTQPNAGINVHM 198 +++ RA++ ++ L D + + V G+ L YR +E F Q NA +N M Sbjct: 234 RLRTFARAHQAQLWLQGDS-EPQADVPGQALGYRLEAWDLELAWRPGDFVQVNAPVNEAM 292 Query: 199 LEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVN 257 + L+ G+ +L+L+CG GNFSL LAR +V+ VE + V A+ N N + Sbjct: 293 VAQALSWLGASAGERVLDLFCGLGNFSLPLARQGAQVVGVEGVEAMVARAQDNAQRNGLE 352 Query: 258 NVKIVRMS-SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP 316 V R SK L D F + +DPPR G + M Q Sbjct: 353 QVHFYRADLSKP-------------LADAPWARSGFDAVLLDPPRDGALEIVRQMTQLQA 399 Query: 317 -HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 ++Y+SCNP +L RD + S ++R L D FP T H E L R Sbjct: 400 RRVVYVSCNPATLARDARELASQGFRLKRTGLLDMFPQTAHAEAMALFER 449 >gi|254507467|ref|ZP_05119601.1| 23S rRNA (uracil-5-)-methyltransferase [Vibrio parahaemolyticus 16] gi|219549537|gb|EED26528.1| 23S rRNA (uracil-5-)-methyltransferase [Vibrio parahaemolyticus 16] Length = 439 Score = 85.9 bits (211), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 60/190 (31%), Positives = 91/190 (47%), Gaps = 29/190 (15%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 N+F Q N +N M+E L D +L+L+CG GNFSL +A+ V+ VE Sbjct: 268 NNFIQVNQDVNQKMVEQALNWLDLTAEDRVLDLFCGLGNFSLPMAKKVRSVIGVEGVDAM 327 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY---RFKTIFVDPP 300 VE A +N N + N + F QA N +D+ + +F I +DP Sbjct: 328 VEKATHNAEINQLENAR--------FFQA-------NLEQDMSGQPWATEKFDKILLDPA 372 Query: 301 RSGLDDATVGMVQ-----AYPHILYISCNPDSLCRD-LSILSTTHTIERLALFDQFPYTR 354 R+G G+V ++Y+SCNP +L RD S+L+ + +L + D FP+T Sbjct: 373 RAG----ASGIVDQLSDLGASRVVYVSCNPATLARDSQSLLNQGFQLRKLGMLDMFPHTS 428 Query: 355 HMECGVLLVR 364 H+E L V+ Sbjct: 429 HLESMALFVK 438 >gi|256752408|ref|ZP_05493268.1| RNA methyltransferase, TrmA family [Thermoanaerobacter ethanolicus CCSD1] gi|256748743|gb|EEU61787.1| RNA methyltransferase, TrmA family [Thermoanaerobacter ethanolicus CCSD1] Length = 452 Score = 85.9 bits (211), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 61/236 (25%), Positives = 109/236 (46%), Gaps = 31/236 (13%) Query: 137 RLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINV 196 RL LH + K + +DY+ E L L ++ SF Q N+ Sbjct: 237 RLVGVLHTQNDSWSDAVVCEKLNVLYGKDYLIEELL----GLKFKISAFSFFQTNS---- 288 Query: 197 HMLEWVLAATKGIQGDL-----LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251 + E + + GD+ +LY G G +++A +V+ +E+ + +V +AR N Sbjct: 289 YGAEKLYETVREFAGDVSDKIVFDLYSGTGTIGIIMAPMAKKVIGIELVEEAVMSARENA 348 Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD-DATVG 310 N + N + ++ +E + D+ + VDPPRSG++ A Sbjct: 349 ELNGLKNCTFIA------GDVSKKLKEIKEMPDV---------VIVDPPRSGINPKALED 393 Query: 311 MVQAYPH-ILYISCNPDSLCRDLSILS-TTHTIERLALFDQFPYTRHMECGVLLVR 364 +++ P ++Y+SCNP+SL RDL I S + ++++ D FP+T H+EC L+ + Sbjct: 394 IIKFNPQKVVYVSCNPESLARDLKIFSEGGYKVDKVKCVDMFPHTYHVECVTLMSK 449 >gi|291535466|emb|CBL08578.1| 23S rRNA m(5)U-1939 methyltransferase [Roseburia intestinalis M50/1] Length = 565 Score = 85.9 bits (211), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 55/156 (35%), Positives = 81/156 (51%), Gaps = 9/156 (5%) Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274 +LYCG G SL LA+ +V VEI ++E A+ N A N +NN + ++E A Sbjct: 325 DLYCGIGTISLFLAQKAGKVYGVEIVPQAIEDAKNNAALNGINNAEFFVGKAEEVLPAF- 383 Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCRDL 332 + + KD D I VDPPR G D + M++ P I+Y+SC+ +L RDL Sbjct: 384 ----YEKKKDTDADMLHPDVIVVDPPRKGCDGVCLETMLKMQPERIVYVSCDSATLARDL 439 Query: 333 SIL-STTHTIERLALFDQFPYTRHMECGVLLV-RKP 366 +L + + ++ DQF T H+E VLL +KP Sbjct: 440 KVLCEGGYELCKVRAVDQFGNTTHVETVVLLSQQKP 475 >gi|332638824|ref|ZP_08417687.1| tRNA (uracil-5-)-methyltransferase related enzyme [Weissella cibaria KACC 11862] Length = 455 Score = 85.9 bits (211), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 77/239 (32%), Positives = 110/239 (46%), Gaps = 28/239 (11%) Query: 138 LRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQI---ENSFTQPNAGI 194 +R+AL K IQ + + I +++ V TL ++ NSF Q N Sbjct: 232 IREALPEVKSIIQNVNQEKTNVILGEKNNTLWGKDVITDTLFGKKFVIGPNSFYQVNPQT 291 Query: 195 NVHMLEWVLAATK-GIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251 + + LAA K G+ GD +++ Y G G SL +A VL VE+ +V+ A+ N Sbjct: 292 TETL--YQLAADKAGLTGDEEVIDAYSGIGTISLTIADRVKSVLGVEVVPGAVDDAKRNA 349 Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD----DA 307 N VNN K E +A + E++ R IFVDPPR GL DA Sbjct: 350 DINGVNNAKF------ELGKAEEKMVEWHEA------GMRPDVIFVDPPRKGLTPELIDA 397 Query: 308 TVGMVQAYPHILYISCNPDSLCRD-LSILSTTHTIER-LALFDQFPYTRHMECGVLLVR 364 GM +YISCNP +L RD + IL + I+ + DQFP T H+E + V+ Sbjct: 398 ATGMEPE--KFVYISCNPATLARDTVQILENGYHIQGPVQPIDQFPQTTHIESVTVFVK 454 >gi|169824993|ref|YP_001692604.1| RNA methyltransferase [Finegoldia magna ATCC 29328] gi|167831798|dbj|BAG08714.1| RNA methyltransferase [Finegoldia magna ATCC 29328] Length = 442 Score = 85.9 bits (211), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 70/260 (26%), Positives = 109/260 (41%), Gaps = 44/260 (16%) Query: 110 LTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDE 169 Q D IV+ IYH + D+ + + LH ++Y Sbjct: 223 FAKQIDNRIVS-IYHTINDNISDAVIVDKLELLHGKEY---------------------- 259 Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLA 228 LT L +R SF QPN + L + G ++ +LYCG G + + A Sbjct: 260 -LTEKINGLEFRISPFSFFQPNPAQAEQIYTRALELAGDLSGKNVYDLYCGTGTIAQIFA 318 Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288 + + V+ VEI + +VE A+ N N + N + + F + + + KD+ Sbjct: 319 KKSESVIGVEIVEEAVEKAKENAELNGLTNTEFICDDCLNFMEKVEK-------KDV--- 368 Query: 289 SYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLA 345 + +DPPR G+ + ++ P +YISCNP + DL + + I+ L Sbjct: 369 ------VVLDPPRDGIHPKAIDRLIDINPDKFIYISCNPITQRMDLDKFIEKGYEIKSLE 422 Query: 346 LFDQFPYTRHMECGVLLVRK 365 FDQFP T H E VLL RK Sbjct: 423 FFDQFPRTYHCEAVVLLSRK 442 >gi|291522721|emb|CBK81014.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Coprococcus catus GD/7] Length = 448 Score = 85.9 bits (211), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 54/163 (33%), Positives = 83/163 (50%), Gaps = 17/163 (10%) Query: 208 GIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265 G+ G +++ YCG G ++ A V+ VE+ SV+ AR N N++ N+ + Sbjct: 297 GLTGKETVVDAYCGIGTIGIIAADKAKSVIGVELNPASVKDARNNARHNNIGNITFYQND 356 Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA-TVGMVQAYP-HILYISC 323 ++ F M +E N D+ IF+DPPR+G + + P I+YISC Sbjct: 357 AERFLNEM---QEQNAKADV---------IFMDPPRAGSTHSFMASAISLNPDRIVYISC 404 Query: 324 NPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVRK 365 NP++L RDL L +T E++ D FP+T HME LL R+ Sbjct: 405 NPETLARDLEFLKKHQYTAEKIQPVDMFPFTTHMETVCLLTRR 447 >gi|262170599|ref|ZP_06038277.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Vibrio mimicus MB-451] gi|261891675|gb|EEY37661.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Vibrio mimicus MB-451] Length = 440 Score = 85.9 bits (211), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 61/189 (32%), Positives = 96/189 (50%), Gaps = 21/189 (11%) Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAK 241 + N F Q N +N M+E L + + D +L+L+CG GNF+L L + V+ VE + Sbjct: 266 LPNHFIQVNRAVNQQMVEQALNWLEVNKQDRVLDLFCGLGNFTLPLTKQAQEVVGVEGVE 325 Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY---RFKTIFVD 298 V+ A +N N +NNV F QA N +D+ S+ +F + +D Sbjct: 326 EMVQHATHNAKLNQINNVA--------FYQA-------NLEQDMTNASWAQQKFAKVLLD 370 Query: 299 PPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRD-LSILSTTHTIERLALFDQFPYTRHM 356 P R+G + + ++Y+SCNP +L RD S+LS +E+L + D FP+T H+ Sbjct: 371 PARAGAEGIVDQLAALGAERVVYVSCNPATLARDSQSLLSQGFRLEKLGMLDMFPHTSHL 430 Query: 357 ECGVLLVRK 365 E L V+K Sbjct: 431 ESMALFVKK 439 >gi|225377937|ref|ZP_03755158.1| hypothetical protein ROSEINA2194_03597 [Roseburia inulinivorans DSM 16841] gi|225210188|gb|EEG92542.1| hypothetical protein ROSEINA2194_03597 [Roseburia inulinivorans DSM 16841] Length = 454 Score = 85.9 bits (211), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 61/216 (28%), Positives = 105/216 (48%), Gaps = 24/216 (11%) Query: 155 ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-- 212 K + + Y+++ T+ G T +R SF Q N + +L G+ G Sbjct: 241 GEKETVIYGKGYIED--TLCGCT--FRISPKSFYQVNP-VQTEILYNKAITYAGLTGKEK 295 Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G L+ A V+ VE+ + +V+ A N N++ N + + +F Sbjct: 296 VIDAYCGTGTIGLIAASKAKEVIGVELNRDAVKDAVINAKRNNIKNEQFYNADAGKFMVE 355 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCR 330 + + K +D+ +F+DPPR+G D+A + V A ++Y+SCNP++L R Sbjct: 356 LAEQN-----KKVDV-------VFMDPPRAGSDEAFLSSVVKLAPKKVVYVSCNPETLAR 403 Query: 331 DLSILSTTHTIERLAL--FDQFPYTRHMECGVLLVR 364 DL L T H + + D FP+T+H+EC LL + Sbjct: 404 DLKYL-TRHGYQAVECQPCDMFPFTKHVECVCLLSK 438 >gi|153835467|ref|ZP_01988134.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio harveyi HY01] gi|148867978|gb|EDL67175.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio harveyi HY01] Length = 439 Score = 85.9 bits (211), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 92/376 (24%), Positives = 170/376 (45%), Gaps = 56/376 (14%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQI---FRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66 Y+QQL K LRQ+M F ++++ E + YR RA ++ D + F + Sbjct: 98 YDQQLTHKQQTLRQLMRKFAGSDIELDAPVLGESLGYRRRARVSLFVD-KKTRQLHFGFR 156 Query: 67 TKERMRIDYFMPGSLL---INALMIEMMATIRL--EPLLRAKLFQIDYLTSQSDQAIVTL 121 K+ +I +L +N L+ E+ +T++ +P +L ++ + + I TL Sbjct: 157 KKQSKQIAQVTDCPVLAPELNVLLPEIYSTLKAFKKP---EQLGHVELVLGDNGPCI-TL 212 Query: 122 IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTV---AGRTL 178 + L + + L A+++Q L ++ D V+ + AG T+ Sbjct: 213 RHLNKLTEKETNTLVEL-----AKRHQASLYLMPETDQL----DLVEGEVPFYQEAGVTV 263 Query: 179 IYRQIENSFTQPNAGINVHML----EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRV 234 + N+F Q N +N M+ +W+ + +L+L+CG GNFSL +A+ V Sbjct: 264 PF--TPNNFIQVNQAVNQKMVAQAVDWLDPKS---DERVLDLFCGLGNFSLPIAKRAKHV 318 Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNRLKDIDIHSYRFK 293 + VE VE A N + N +N+ + + ++F + +F++ Sbjct: 319 VGVEGVAEMVEKAANNASLNQINSARFYHANLEQDFEGQVWAAEQFDK------------ 366 Query: 294 TIFVDPPRSG----LDDATVGMVQAYPHILYISCNPDSLCRDL-SILSTTHTIERLALFD 348 + +DP R+G +D +V + I+Y+SCNP +L RD S+L + + +L + D Sbjct: 367 -VLLDPARAGASGIIDQVSVLGAR---RIVYVSCNPATLARDSQSLLEQGYQLTKLGMLD 422 Query: 349 QFPYTRHMECGVLLVR 364 FP+T H+E L + Sbjct: 423 MFPHTSHLESMALFEK 438 >gi|325663161|ref|ZP_08151611.1| hypothetical protein HMPREF0490_02352 [Lachnospiraceae bacterium 4_1_37FAA] gi|325470615|gb|EGC73845.1| hypothetical protein HMPREF0490_02352 [Lachnospiraceae bacterium 4_1_37FAA] Length = 464 Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 93/353 (26%), Positives = 153/353 (43%), Gaps = 41/353 (11%) Query: 39 EPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEP 98 EP HYR +A+F + D D F R +P + AL + I LE Sbjct: 125 EPFHYRNKAQFPVGTDKDGKAVTGF-----YAGRTHQIIPNTDC--ALGVSQNQQI-LEE 176 Query: 99 LLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRE---------------CAIRLRDALH 143 +L + +++ + ++Q L+ H L+ + CA + D L Sbjct: 177 ILS--IMNENHIPAYNEQDCSGLVRHILIRYGFTTKEIMVCFVINGDNLPCADKFVDKLS 234 Query: 144 ARKYQIQLIGRANK--TKICLDRD----YVDERLTVAGRTLIYRQIENSFTQPNAGINVH 197 + + NK T + + ++ + D +T + Y+ SF Q N Sbjct: 235 QIEGMRSITFSKNKENTNVIMGKEIEVLWGDGYITDYIGNVKYQISPLSFYQVNPVQTEK 294 Query: 198 MLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH 255 + ++ L G+ G+ + +LYCG G SL LA+ +V VEI ++E A+ N N Sbjct: 295 LYKYALEYA-GLTGEETVWDLYCGIGTISLFLAQKAKQVYGVEIVPQAIEDAKQNAELND 353 Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQA 314 + N + ++E A N K+ I VDPPR G ++A + MV+ Sbjct: 354 MKNAEFFVGKAEEILPAYYE----NYAKEHPGQQAHADVIVVDPPRKGCEEALLETMVKM 409 Query: 315 YP-HILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRK 365 P I+Y+SC+ +L RDL L + +E++ + DQFP T H+E VLL R+ Sbjct: 410 QPDRIVYVSCDSATLARDLKYLCGEGYALEKVQVVDQFPNTVHVETCVLLQRQ 462 >gi|315231713|ref|YP_004072149.1| tRNA (Uracil54-C5-)-methyltransferase [Thermococcus barophilus MP] gi|315184741|gb|ADT84926.1| tRNA (Uracil54-C5-)-methyltransferase [Thermococcus barophilus MP] Length = 417 Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 60/198 (30%), Positives = 102/198 (51%), Gaps = 28/198 (14%) Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGN 222 +R+++ ERL ++Y NSF Q N+ V++++ V +G + +L+LY G G Sbjct: 236 NREFIKERLD----DVVYLIHPNSFFQTNSYQAVNLVKKVAEFAEGKK--VLDLYSGVGT 289 Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282 F + LA+ V +EI +VE AR N N+V+ +F Sbjct: 290 FGIYLAKKGFEVEGIEINPFAVEMARKNAEINNVD-------------------AKFYVG 330 Query: 283 KDIDIHSY-RFKTIFVDPPRSGLDDATV-GMVQAYPHIL-YISCNPDSLCRDLSILSTTH 339 +D + + ++ TI VDPPR+GL + M++ P I+ Y+SCNP +L ++L L + + Sbjct: 331 EDKSVGNLGKYDTIVVDPPRAGLHPKLIRKMLKDAPEIIVYVSCNPKTLAKNLEELKSIY 390 Query: 340 TIERLALFDQFPYTRHME 357 +E + D FP+T H+E Sbjct: 391 KVEEIIGLDMFPHTPHVE 408 >gi|223986763|ref|ZP_03636748.1| hypothetical protein HOLDEFILI_04071 [Holdemania filiformis DSM 12042] gi|223961284|gb|EEF65811.1| hypothetical protein HOLDEFILI_04071 [Holdemania filiformis DSM 12042] Length = 484 Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 55/161 (34%), Positives = 83/161 (51%), Gaps = 17/161 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRM-SSKEFTQ 271 L+E Y G G SL+L ++ +E +VE A+ N N NV+ V ++KE + Sbjct: 302 LVEAYSGVGGISLMLKEKAKTIIGIEFVPEAVENAKENARLNRAENVRFVCGDAAKEMKK 361 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLC 329 +RR + ID + VDPPR+GLD A + + Q P I+YISCNP +L Sbjct: 362 IIRRTK-------ID-------AVVVDPPRTGLDGAMIESLRQCQPKQIVYISCNPATLG 407 Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRKPSGWH 370 ++L L + ++ + FD FP T H+E VLL + + H Sbjct: 408 KNLKELRDLYEVKTVIPFDMFPNTPHVETVVLLSKLKTKKH 448 >gi|220931148|ref|YP_002508056.1| RNA methyltransferase, TrmA family [Halothermothrix orenii H 168] gi|219992458|gb|ACL69061.1| RNA methyltransferase, TrmA family [Halothermothrix orenii H 168] Length = 453 Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 48/155 (30%), Positives = 73/155 (47%), Gaps = 13/155 (8%) Query: 210 QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269 Q +++ YCG G+ + LA V +E+ ++E A N A N +NN ++ ++ Sbjct: 306 QETVVDAYCGAGSIGIYLAGEARTVYGIEVVGSAIEDAERNAALNGINNCIFIKGKVEDK 365 Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDS 327 + +D + I DPPR GLD T+ V P I+Y+SCNP + Sbjct: 366 LPEL-----------VDKKKIKPDVIIFDPPRKGLDKETMATVLEVLPPKIVYVSCNPAT 414 Query: 328 LCRDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362 L RDL + + I + D FP T H+EC V L Sbjct: 415 LARDLKEIKACYDINEVQPVDLFPQTYHVECVVKL 449 >gi|260771911|ref|ZP_05880829.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Vibrio metschnikovii CIP 69.14] gi|260613203|gb|EEX38404.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Vibrio metschnikovii CIP 69.14] Length = 440 Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 66/212 (31%), Positives = 102/212 (48%), Gaps = 42/212 (19%) Query: 173 VAGRTLIYRQ-------IENSFTQPNAGINVHM----LEWVLAATKGIQGD--LLELYCG 219 V G T Y++ + F Q N IN M +EW+ IQ + +L+L+CG Sbjct: 249 VQGETPYYQETGVTMHFLPTHFIQVNQSINQRMVAQAIEWL-----EIQANDRVLDLFCG 303 Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS-SKEFTQAMRRERE 278 GNFSL LAR V+ VE V A N N +NN + + ++ T+A + Sbjct: 304 LGNFSLPLARIAHYVVGVEGVDEMVSVASENAHLNQINNSAFYQANLEQDMTKATWAAEK 363 Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ-----AYPHILYISCNPDSLCRDL- 332 F++ I +DP R+G G+V+ + I+Y+SCNP +L RD Sbjct: 364 FDK-------------ILLDPARAG----AAGIVEQLGQLSAQRIVYVSCNPATLARDSQ 406 Query: 333 SILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 S+L+ + + +LA+ D FP+T H+E L V+ Sbjct: 407 SLLNQGYHLAKLAMLDMFPHTSHLESMALFVK 438 >gi|253575073|ref|ZP_04852412.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Paenibacillus sp. oral taxon 786 str. D14] gi|251845529|gb|EES73538.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Paenibacillus sp. oral taxon 786 str. D14] Length = 333 Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 65/197 (32%), Positives = 94/197 (47%), Gaps = 28/197 (14%) Query: 175 GRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFS 224 GR +IY I + SF Q N I +L G+ G +++ YCG G S Sbjct: 142 GREVIYDYIGDVKFAISARSFYQVNP-IQTEVLYGKTVEYAGLTGQETVIDAYCGIGTIS 200 Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284 L LA+H RV VEI K ++E AR N N +N+V +S++ A + + Sbjct: 201 LFLAQHAKRVYGVEIVKEAIEDARVNAKLNGMNHVTFEVGASEDVIPAWKEQ-------- 252 Query: 285 IDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCRDLSIL--STTHT 340 I VDPPR G D + +++ P ++Y+SCNP +L RDL IL T Sbjct: 253 ----GIEADVIVVDPPRKGCDPHLLDTIIKMKPERVVYVSCNPATLARDLRILEDGGYRT 308 Query: 341 IERLALFDQFPYTRHME 357 +E + D FP+T H+E Sbjct: 309 VE-VTPVDMFPHTVHVE 324 >gi|259502578|ref|ZP_05745480.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus antri DSM 16041] gi|259169468|gb|EEW53963.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus antri DSM 16041] Length = 479 Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 50/165 (30%), Positives = 83/165 (50%), Gaps = 18/165 (10%) Query: 206 TKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVR 263 + G+ G +++ YCG G SL +ARH +V VEI ++E A++N N + N K V Sbjct: 324 SAGLDGSQTVIDAYCGIGTISLAVARHAKQVYGVEIVPAAIEDAKHNAKRNGIKNAKFV- 382 Query: 264 MSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYI 321 + E +F + + + + + VDPPR GL ++ + A ++Y+ Sbjct: 383 --------VGKAEDQFAKWQAAGL---KPDVVIVDPPRKGLAESLIEATGEMAPQKVIYV 431 Query: 322 SCNPDSLCRDLSILSTT--HTIERLALFDQFPYTRHMECGVLLVR 364 SCNP +L RD+ + H ++ + DQFP T H+E +L R Sbjct: 432 SCNPATLVRDIQRFADVGYHVVKPIQPVDQFPQTTHVESVTVLER 476 >gi|297545003|ref|YP_003677305.1| TrmA family RNA methyltransferase [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296842778|gb|ADH61294.1| RNA methyltransferase, TrmA family [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 450 Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 59/210 (28%), Positives = 105/210 (50%), Gaps = 31/210 (14%) Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-----LELYC 218 RDY+ E + L ++ SF Q N+ + E + + GD+ +LY Sbjct: 264 RDYLIEEIL----DLKFKISAFSFFQTNS----YGAEKLYETVREFAGDVSDKIVFDLYS 315 Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278 G G +++A +V+ +E+ + +V +AR N N + N + + + +Q ++ +E Sbjct: 316 GTGTIGIIMAPMAKKVIGIELVEEAVMSARENAKLNGLKNCTFI---AGDVSQKLKEIKE 372 Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLD-DATVGMVQAYPH-ILYISCNPDSLCRDLSILS 336 + + VDPPRSG++ A +V+ P ++Y+SCNP+SL RDL + S Sbjct: 373 ------------QPDVVIVDPPRSGINPKALEDIVKFNPQKVVYVSCNPESLARDLKVFS 420 Query: 337 -TTHTIERLALFDQFPYTRHMECGVLLVRK 365 + ++++ D FPYT H+E VL+ RK Sbjct: 421 EGGYKVDKVKCVDMFPYTYHVETVVLMERK 450 >gi|168185623|ref|ZP_02620258.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum C str. Eklund] gi|169296454|gb|EDS78587.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum C str. Eklund] Length = 472 Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 47/156 (30%), Positives = 79/156 (50%), Gaps = 15/156 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + + YCG G SL L+++ +V VEI ++E A+ N N+V+N + + S+E Sbjct: 329 VFDAYCGTGTISLFLSKNAKKVYGVEIVDAAIENAKINAEENNVDNAEFIVGKSEEVIPN 388 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCR 330 + ++ + + VDPPR G D A + + I+Y+SC+P +L R Sbjct: 389 LIKQ------------GIKADVVVVDPPRKGCDKALLDAIGNMKPDRIVYVSCDPGTLAR 436 Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVRK 365 DL+IL + + + D FP T H+EC V L ++ Sbjct: 437 DLAILDELGYETKEVQPVDMFPQTGHVECVVRLNKR 472 >gi|312873424|ref|ZP_07733475.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners LEAF 2052A-d] gi|311091108|gb|EFQ49501.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners LEAF 2052A-d] Length = 447 Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 52/156 (33%), Positives = 76/156 (48%), Gaps = 15/156 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ Y G G L +A+H +VL VEI + +V+ A+ N N +NN + ++E Sbjct: 304 VIDAYSGIGTIGLSVAKHVKKVLGVEIVRDAVKDAKKNAILNGINNAEYFEGKAEELMPQ 363 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCR 330 E + IFVDPPR GL D + V P I+YISCNP ++ R Sbjct: 364 WANE------------GLKTDVIFVDPPRKGLTDTFIKAAVATSPKKIVYISCNPATMIR 411 Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRK 365 DL I + + + + D FP T H+E LL RK Sbjct: 412 DLQIFQAAGYDFDCIDPVDMFPQTPHVETIALLTRK 447 >gi|149922893|ref|ZP_01911315.1| RNA methyltransferase, TrmA family protein [Plesiocystis pacifica SIR-1] gi|149816281|gb|EDM75786.1| RNA methyltransferase, TrmA family protein [Plesiocystis pacifica SIR-1] Length = 466 Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 105/368 (28%), Positives = 156/368 (42%), Gaps = 63/368 (17%) Query: 33 LQIFRSEPIHYRMRAEFHI-WHDGDDLYHIMFDQQTK------ERMRIDYFMPGSLLINA 85 L+ R+EP YR RA W G D + F +Q K E + G LI Sbjct: 125 LEPLRAEPWAYRRRARLGAKWVAGKDKVVVGFREQDKRFIANLEGCEVLAGRHGGALIPK 184 Query: 86 LMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHAR 145 L E++A + L K+ Q++ + VT + R+L+ E RLR A Sbjct: 185 LS-ELIAGLSLA----TKIPQVEVSVADDTDGAVTALVFRVLEPPTDEDRERLRAFAAAE 239 Query: 146 KYQIQLIGRANKTKICLDRDYVDERLTVAG------RTLIYRQIE---------NSFTQP 190 ++ L + T + L + DER G R L Y E F Q Sbjct: 240 GLRVFLQSKGLDT-VAL---FADERGQTEGEGFEDARELSYALPEFELDLRFRPTDFVQV 295 Query: 191 NAGINVHMLE---WVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA 247 NA IN M+ +LA + +L+L+CG GNFSL LAR V VE V A Sbjct: 296 NAAINRSMIARAVELLALEP--EHRVLDLFCGLGNFSLALARRAGAVFGVEGDAGLVARA 353 Query: 248 RYNIAANHVNNVKI-VRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306 N N ++N + VR +TQ E E+ + +D + +DPPRSG Sbjct: 354 AANAERNGLSNARFEVR---DLYTQVG--ELEWLGGQPVD-------RVLLDPPRSG--- 398 Query: 307 ATVGMVQ--------AYPHILYISCNPDSLCRDLSILSTTHT--IERLALFDQFPYTRHM 356 + +V+ P ++Y++C+P++L RD ++L TH + + D FP+T H+ Sbjct: 399 -ALAIVEHIDRIAWAGKPRLVYVACSPETLARDAAVLVGTHGYRLSAAGVMDMFPHTAHV 457 Query: 357 ECGVLLVR 364 E L R Sbjct: 458 ESIALFER 465 >gi|260654818|ref|ZP_05860306.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Jonquetella anthropi E3_33 E1] gi|260630533|gb|EEX48727.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Jonquetella anthropi E3_33 E1] Length = 454 Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 55/157 (35%), Positives = 79/157 (50%), Gaps = 20/157 (12%) Query: 214 LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273 LELYCG G+ + LAR V A EI P+VE AR N++ N++ NV++ R+S E Sbjct: 305 LELYCGVGSLTAFLARKSRAVTAAEIWPPAVEMARKNMSGNNLTNVEL-RLSPAE----- 358 Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRD 331 + + +D + VDPPR+G D + + I+Y+SCNP +L RD Sbjct: 359 KLPSDLFEGQDC---------LVVDPPRTGCDGEMLARLAGTSIKSIVYVSCNPATLARD 409 Query: 332 LSILSTTH---TIERLALFDQFPYTRHMECGVLLVRK 365 + L + + FD FP T H+E LL RK Sbjct: 410 AARLQSAGYQLVTSSVRAFDMFPQTSHVETVALLCRK 446 >gi|153931008|ref|YP_001385124.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum A str. ATCC 19397] gi|153937829|ref|YP_001388593.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum A str. Hall] gi|152927052|gb|ABS32552.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum A str. ATCC 19397] gi|152933743|gb|ABS39242.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum A str. Hall] Length = 450 Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 60/240 (25%), Positives = 110/240 (45%), Gaps = 31/240 (12%) Query: 133 ECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNA 192 EC ++ LH + + + +K +I RDY+ E L L ++ +F Q N+ Sbjct: 234 ECKGEIKGILHTINDTLSDVVQVDKLEILYGRDYIIEELL----GLKFKIAPEAFFQTNS 289 Query: 193 GINVHMLEWVLAATKGIQGD-----LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA 247 E + + K GD + +LYCG G ++A +V+ VE+ + +V+AA Sbjct: 290 ----KGAEKLYSIVKDFLGDASSKVVFDLYCGTGTIGQIVAPKAKKVIGVELIEEAVKAA 345 Query: 248 RYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307 N N +NN + + + + ++++ + I +DPPR G+ Sbjct: 346 NENAKLNGLNNCEFIAGDVAKVIKDVKQKPDI---------------IILDPPRPGVHPV 390 Query: 308 TVGMVQAY--PHILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 + V + I+Y+SCNP +L DL ++ + +E++ D FP+T H+E V L + Sbjct: 391 ALEYVVKFEPKEIIYVSCNPKTLVDDLKYLIDNGYKLEKVKGMDMFPHTPHVETVVKLSK 450 >gi|94502134|ref|ZP_01308635.1| 23S rRNA (uracil-5-)-methyltransferase [Oceanobacter sp. RED65] gi|94425736|gb|EAT10743.1| 23S rRNA (uracil-5-)-methyltransferase [Oceanobacter sp. RED65] Length = 448 Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 57/183 (31%), Positives = 93/183 (50%), Gaps = 22/183 (12%) Query: 185 NSFTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240 NSF Q N +N M L+W+ +L+L+ G GNF+L LA+H RV AVE+ Sbjct: 279 NSFIQANGRVNEQMVQTALQWLNVKA---HETVLDLFAGLGNFTLPLAQHAKRVCAVELD 335 Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300 K V ++N N ++NV V++ + + A+ RL D+ I +DPP Sbjct: 336 KKMVADLQHNAQRNELSNVD-VQLGNLDNLDAVE------RLSAADV-------IVLDPP 381 Query: 301 RSGLDDATVGMVQAYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECG 359 R+G + + +LY++C P SL RD ++L + ++++ + D FP T+H+E Sbjct: 382 RAGAAVIMPWVAKQKSRVLYVACEPSSLIRDAAVLVESGFKLDKVVVLDMFPQTKHVETM 441 Query: 360 VLL 362 L Sbjct: 442 ALF 444 >gi|218547699|ref|YP_002381490.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia fergusonii ATCC 35469] gi|218355240|emb|CAQ87847.1| 23S rRNA (uracil-5)-methyltransferase [Escherichia fergusonii ATCC 35469] gi|324111189|gb|EGC05172.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia fergusonii B253] Length = 432 Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 58/187 (31%), Positives = 90/187 (48%), Gaps = 27/187 (14%) Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 F Q N G+N M +EW+ Q +L+L+CG GNF+L LA V+ VE Sbjct: 263 FIQVNDGVNQKMVAQAIEWLDIQP---QDRVLDLFCGMGNFTLALATRAASVVGVEGVPA 319 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDP 299 VE R N N + NV + ++ D+ + F + +DP Sbjct: 320 LVEKGRENARENGLANVTFYHENLED---------------DVTKQPWAKNGFDKVLLDP 364 Query: 300 PRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHME 357 R+G +++ P ++Y+SCNP +L RD ++++ +TI RLA+ D FP+T H+E Sbjct: 365 ARAGAAGVMQQIIKLEPIRVVYVSCNPATLARDSEALINAGYTIARLAMLDMFPHTGHLE 424 Query: 358 CGVLLVR 364 VL R Sbjct: 425 SMVLFER 431 >gi|313898679|ref|ZP_07832214.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium sp. HGF2] gi|312956563|gb|EFR38196.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium sp. HGF2] Length = 438 Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 55/182 (30%), Positives = 91/182 (50%), Gaps = 15/182 (8%) Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 SF Q N+ V + + + K ++E Y G G SL L ++ +E K +V Sbjct: 268 SFFQLNSKQAVQLYRTIASMVKENNELIVEAYSGIGAISLYLKDKAKEIIGIESIKDAVV 327 Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD 305 A N A N +V + A + ++ + ID+ + VDPPRSGLD Sbjct: 328 NANQNAALNGCEHVSFL------CDDAANKLTYLSKKRSIDV-------LVVDPPRSGLD 374 Query: 306 DATVGMV--QAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363 DA + + +I+Y+SCNP +L ++L++L + + ++R+ D FP+T H+E VL+ Sbjct: 375 DAMLECILRSKIKNIIYVSCNPATLGKNLAVLCSRYNVDRIQPIDIFPHTPHVESVVLMS 434 Query: 364 RK 365 RK Sbjct: 435 RK 436 >gi|258597349|ref|XP_001348019.2| RNA (Uracil-5-)methyltransferase, putative [Plasmodium falciparum 3D7] gi|254832677|gb|AAN35932.2| RNA (Uracil-5-)methyltransferase, putative [Plasmodium falciparum 3D7] Length = 857 Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 51/169 (30%), Positives = 92/169 (54%), Gaps = 19/169 (11%) Query: 207 KGIQGDLLELYCGNGNFSL----VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262 +GI+ + +L CG G S+ VL + ++ ++I + S+ +A N N++NN K + Sbjct: 697 EGIKNYIFDLCCGTGTISICASNVLKSNDVHIIGIDICESSIISANKNAKMNNINNYKFL 756 Query: 263 RMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY---PHIL 319 +EF Q +K+I ++ I VDPPR+GL ++ + ++ A+ I+ Sbjct: 757 HGRVEEFFQK--------EIKNIQTNNANIICI-VDPPRNGLANSVLNILSAHHLINQII 807 Query: 320 YISCNPDSLCRDLS---ILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 Y+SCNP +L +++ L+ T I+ +A D FP+T H+EC +V+K Sbjct: 808 YVSCNPITLINNVTNILFLNETLKIKNMAFVDMFPHTFHLECITNIVKK 856 >gi|326391400|ref|ZP_08212937.1| RNA methyltransferase, TrmA family [Thermoanaerobacter ethanolicus JW 200] gi|325992535|gb|EGD50990.1| RNA methyltransferase, TrmA family [Thermoanaerobacter ethanolicus JW 200] Length = 450 Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 58/210 (27%), Positives = 103/210 (49%), Gaps = 31/210 (14%) Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-----LELYC 218 RDY+ E + L ++ SF Q N+ + E + + GD+ +LY Sbjct: 264 RDYLIEEIL----DLKFKISAFSFFQTNS----YGAEKLYETVREFAGDVSDKIVFDLYS 315 Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278 G G +++A +V+ +E+ + +V +AR N N + N + ++ +E Sbjct: 316 GTGTIGIIMAPMAKKVIGIELVEEAVMSARENAELNGLKNCTFIA------GDVSKKLKE 369 Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLD-DATVGMVQAYPH-ILYISCNPDSLCRDLSILS 336 + D+ + VDPPRSG++ A +++ P ++Y+SCNP+SL RDL I S Sbjct: 370 IKEMPDV---------VIVDPPRSGINPKALEDIIKFNPQKVVYVSCNPESLARDLKIFS 420 Query: 337 -TTHTIERLALFDQFPYTRHMECGVLLVRK 365 + ++++ D FP+T H+E VL+ RK Sbjct: 421 EGGYKVDKVKCVDMFPHTHHVETVVLMERK 450 >gi|313887799|ref|ZP_07821479.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Peptoniphilus harei ACS-146-V-Sch2b] gi|312846142|gb|EFR33523.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Peptoniphilus harei ACS-146-V-Sch2b] Length = 443 Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 54/153 (35%), Positives = 76/153 (49%), Gaps = 18/153 (11%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + +LY G G + VLA +V+ VEI + +VEAAR N N ++NV EF + Sbjct: 302 VFDLYSGTGTITQVLAESAKKVIGVEIVEEAVEAARENAKLNGIDNV--------EFIAS 353 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330 + LK +D I +DPPR G++ + + + LYISCNP +L R Sbjct: 354 -------DVLKVLDDLDKNPDLIVLDPPREGINPKAIDKIIDFDPEKFLYISCNPVTLVR 406 Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLL 362 DL + + IE L + DQFP T H E LL Sbjct: 407 DLGVFKERGYEIEELEIVDQFPKTSHAEVITLL 439 >gi|260599136|ref|YP_003211707.1| 23S rRNA m(5)U1939 methyltransferase [Cronobacter turicensis z3032] gi|260218313|emb|CBA33301.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Cronobacter turicensis z3032] Length = 486 Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 60/187 (32%), Positives = 90/187 (48%), Gaps = 27/187 (14%) Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 F Q N +N M LEW L G + +L+L+CG GNF+L LAR + V+ VE Sbjct: 317 FIQVNDAVNQQMVARALEW-LDIQPGER--VLDLFCGMGNFTLPLARRAESVVGVEGVAA 373 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDP 299 VE YN N + NV + + +E D+ + F + +DP Sbjct: 374 LVEKGSYNAGLNTLKNVTFFQHNLEE---------------DVTRQPWAQQGFDKVLLDP 418 Query: 300 PRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHME 357 R+G +V+ P ++Y+SCNP +L RD ++L+ + RLA+ D FP+T H+E Sbjct: 419 ARAGAAGVMQHIVKLKPRRVVYVSCNPSTLMRDSEALLAAGYRTGRLAMLDMFPHTSHLE 478 Query: 358 CGVLLVR 364 L R Sbjct: 479 SMALFER 485 >gi|170761366|ref|YP_001788185.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum A3 str. Loch Maree] gi|169408355|gb|ACA56766.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum A3 str. Loch Maree] Length = 450 Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 60/240 (25%), Positives = 110/240 (45%), Gaps = 31/240 (12%) Query: 133 ECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNA 192 EC ++ LH + + + +K +I RDY+ E L L ++ +F Q N+ Sbjct: 234 ECKGEIKGILHTINDTLSDVVQVDKLEILYGRDYIIEELL----GLKFKIAPEAFFQTNS 289 Query: 193 GINVHMLEWVLAATKGIQGD-----LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA 247 E + + K GD + +LYCG G ++A +V+ VE+ + +V+AA Sbjct: 290 ----KGAEKLYSIVKDFLGDASSKVVFDLYCGTGTIGQIVAPKAKKVIGVELIEEAVKAA 345 Query: 248 RYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307 N N +NN + + + + ++++ + I +DPPR G+ Sbjct: 346 NENAKLNGLNNCEFIAGDVAKVIKDVKQKPDI---------------IILDPPRPGVHPV 390 Query: 308 TVGMVQAY--PHILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 + V + I+Y+SCNP +L DL ++ + +E++ D FP+T H+E V L + Sbjct: 391 ALEYVVKFQPKEIIYVSCNPKTLVDDLKYLIDNGYKLEKVKGMDMFPHTPHVETVVRLSK 450 >gi|83644637|ref|YP_433072.1| 23S rRNA 5-methyluridine methyltransferase [Hahella chejuensis KCTC 2396] gi|123534038|sp|Q2SL27|RUMA_HAHCH RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|83632680|gb|ABC28647.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Hahella chejuensis KCTC 2396] Length = 446 Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 58/179 (32%), Positives = 90/179 (50%), Gaps = 11/179 (6%) Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 FTQ N IN ML L + G+ +L+L+CG GNF+L +AR V+ VE ++ V Sbjct: 273 FTQVNRDINRRMLAQALEWLQPQAGETILDLFCGLGNFTLPIARSAAHVVGVEGSEDMVR 332 Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD 305 N N ++NV+ + A +E + L+ D + +DPPRSG + Sbjct: 333 RGYANAELNGISNVEF-HAADLHLPLAPAKEAKHAWLRTYD-------KVLLDPPRSGAE 384 Query: 306 DATVGMVQ-AYPHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLL 362 + M + I+Y+SCNP +L RD IL+T + + + + D FP+T H+E L Sbjct: 385 ELAKQMTRFGAKRIVYVSCNPATLARDAGILATQGYKLIKAGVMDMFPHTAHVESMALF 443 >gi|325496175|gb|EGC94034.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia fergusonii ECD227] Length = 432 Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 58/187 (31%), Positives = 90/187 (48%), Gaps = 27/187 (14%) Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 F Q N G+N M +EW+ Q +L+L+CG GNF+L LA V+ VE Sbjct: 263 FIQVNDGVNQKMVAQAIEWLDIQP---QDRVLDLFCGMGNFTLALATRAASVVGVEGVPA 319 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDP 299 VE R N N + NV + ++ D+ + F + +DP Sbjct: 320 LVEKGRENARENGLANVTFYHENLED---------------DVTKQPWAKNGFDKVLLDP 364 Query: 300 PRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHME 357 R+G +++ P ++Y+SCNP +L RD ++++ +TI RLA+ D FP+T H+E Sbjct: 365 ARAGAAGVMQQIIKLEPIRVVYVSCNPATLARDSEALINAGYTIARLAMLDMFPHTGHLE 424 Query: 358 CGVLLVR 364 VL R Sbjct: 425 SMVLFER 431 >gi|153815457|ref|ZP_01968125.1| hypothetical protein RUMTOR_01692 [Ruminococcus torques ATCC 27756] gi|145847099|gb|EDK24017.1| hypothetical protein RUMTOR_01692 [Ruminococcus torques ATCC 27756] Length = 500 Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 58/173 (33%), Positives = 87/173 (50%), Gaps = 17/173 (9%) Query: 208 GIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265 G++GD + +LYCG G SL LA+ +V VEI P+++ AR N N + N + Sbjct: 332 GLKGDETVWDLYCGIGTISLFLAQKAKQVYGVEIVPPAIDDARENAQLNGIENAQFFVGK 391 Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYPH-ILYISC 323 S+E ++ E + H+ I VDPPR G D + + + P I+Y+SC Sbjct: 392 SEEILPKYYKDYEEQHGGE-KAHA---DVIVVDPPRKGCDAKLLDTILKMQPERIVYVSC 447 Query: 324 NPDSLCRDLSIL---------STTHTIERLALFDQFPYTRHMECGVLLVRKPS 367 + +L RDL IL + + IE+ DQFP T H+E VL+ +K S Sbjct: 448 DSATLARDLKILCEGAQEDEKTAGYQIEKWRAVDQFPMTTHVETIVLIQKKNS 500 >gi|163814586|ref|ZP_02205975.1| hypothetical protein COPEUT_00737 [Coprococcus eutactus ATCC 27759] gi|158450221|gb|EDP27216.1| hypothetical protein COPEUT_00737 [Coprococcus eutactus ATCC 27759] Length = 507 Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 94/391 (24%), Positives = 172/391 (43%), Gaps = 54/391 (13%) Query: 9 QYEQQLAEKVDRLRQMMLAF-QVPNLQIFRS-------EPIHYRMRAEFHIWHDGDDLYH 60 YEQQL K ++++ + ++ N++ +P HYR +A+F + D + Sbjct: 135 SYEQQLEYKWNKVKNCLQRIGKMENVEAIMEKPAYGMDDPFHYRNKAQFPVGRDKNGDVV 194 Query: 61 IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVT 120 I F D S I A + + + I +R+ + +++++ ++ Sbjct: 195 IGFYAGRSH----DIIDTESCAIGAPVNDQIVAI-----VRS-FIEDNHISTYDEETGRG 244 Query: 121 LIYHRLLDDAWRE-----CAIRLRDAL-HARKYQIQLIGRANKTKICLD-------RDYV 167 L+ H L+ + C + + L H+ +L+ T ICL+ R Sbjct: 245 LVRHILIRVGFTTKEIMVCLVTNGNKLPHSEILIDELVKIDGMTSICLNVNMENTNRILG 304 Query: 168 DERLTVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGD--LLELY 217 D+ +T+ G++ I I + SF Q N + ++L + GD + ++Y Sbjct: 305 DKCITLWGQSYITDYIGDIKYQISPLSFYQVNP-VQTNVLYNKALEYADLSGDETVWDMY 363 Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277 CG G SL LA+ +V VEI +++ AR+N N + N + ++E + ++ Sbjct: 364 CGIGTISLFLAQKAKKVYGVEIVPQAIDDARHNAEINGITNAEFFVGKAEEVVPDIYKKG 423 Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCRDLSIL 335 D+ + VDPPR G D + +V P I+Y+SC+P +L RD+ IL Sbjct: 424 GDGSHADV---------VVVDPPRKGCDQVLLDTLVHMAPERIVYVSCDPATLARDVKIL 474 Query: 336 -STTHTIERLALFDQFPYTRHMECGVLLVRK 365 + ++A+ DQF ++ H+E LL RK Sbjct: 475 QEKGYVANKVAVVDQFCHSGHVESVCLLSRK 505 >gi|168179294|ref|ZP_02613958.1| 23S rRNA -methyltransferase RumA [Clostridium botulinum NCTC 2916] gi|182669610|gb|EDT81586.1| 23S rRNA -methyltransferase RumA [Clostridium botulinum NCTC 2916] Length = 450 Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 60/240 (25%), Positives = 110/240 (45%), Gaps = 31/240 (12%) Query: 133 ECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNA 192 EC ++ LH + + + +K +I RDY+ E L L ++ +F Q N+ Sbjct: 234 ECKGEIKGILHTINDTLSDVVQVDKLEILYGRDYIIEELL----GLKFKIAPEAFFQTNS 289 Query: 193 GINVHMLEWVLAATKGIQGD-----LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA 247 E + + K GD + +LYCG G ++A +V+ VE+ + +V+AA Sbjct: 290 ----KGAEKLYSIVKDFLGDASSKVVFDLYCGTGTIGQIVAPRAKKVIGVELIEEAVKAA 345 Query: 248 RYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307 N N +NN + + + + ++++ + I +DPPR G+ Sbjct: 346 NENAKLNGLNNCEFIAGDVAKVIKDVKQKPDI---------------IILDPPRPGVHPV 390 Query: 308 TVGMVQAY--PHILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 + V + I+Y+SCNP +L DL ++ + +E++ D FP+T H+E V L + Sbjct: 391 ALEYVVKFEPKEIIYVSCNPKTLVDDLKYLIDNGYKLEKVKGMDMFPHTPHVETVVKLSK 450 >gi|193216964|ref|YP_002000206.1| tRNA (uracil-5-)-methyltransferase related enzyme [Mycoplasma arthritidis 158L3-1] gi|193002287|gb|ACF07502.1| tRNA (uracil-5-)-methyltransferase related enzyme [Mycoplasma arthritidis 158L3-1] Length = 449 Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 63/228 (27%), Positives = 109/228 (47%), Gaps = 31/228 (13%) Query: 149 IQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIEN--------SFTQPNAGINVHMLE 200 +Q++ KTKI + + +AG+ I +I+ SF Q N M + Sbjct: 238 VQIVCNEEKTKIL-------KLIVLAGKESIEYKIDKLKFNVSSQSFYQVNEKQTNKMYK 290 Query: 201 WVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259 +L + + +++ + G G + LA+ +V+ VEI+K + + N N +NN+ Sbjct: 291 TLLKSLNLTGSEFIVDAFAGVGTIGMYLAKKAKQVVCVEISKKATLNGKENAKLNSLNNL 350 Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPH 317 + + F ++E R ++ID+ I DPPR GL+ T+ + ++ Sbjct: 351 EFISEDCNRFF-----DKECTRRQNIDV-------IVFDPPREGLNKTTINAIIPKSLKR 398 Query: 318 ILYISCNPDSLCRDLSILSTT-HTIERLALFDQFPYTRHMECGVLLVR 364 I YISCNP +L RDL + ++ + IE + FD FP T H+E LL + Sbjct: 399 IAYISCNPRTLVRDLKLFTSKGYKIEFVQPFDMFPQTYHVETLALLSK 446 >gi|238917769|ref|YP_002931286.1| hypothetical protein EUBELI_01850 [Eubacterium eligens ATCC 27750] gi|238873129|gb|ACR72839.1| Hypothetical protein EUBELI_01850 [Eubacterium eligens ATCC 27750] Length = 484 Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 57/176 (32%), Positives = 90/176 (51%), Gaps = 25/176 (14%) Query: 208 GIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265 G+ G+ + +LYCG G SL LA++ +V VEI ++E A+ N A N ++N + Sbjct: 313 GLTGNETVWDLYCGIGTISLFLAKNARKVYGVEIVPQAIEDAKNNAAINGIDNAEFFVGK 372 Query: 266 SKEF--------------TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG- 310 ++E T A +RE R S + VDPPR G D++ + Sbjct: 373 AEEVVPHFYEEMARLATDTSATEAQREEAR------KSITPDVVVVDPPRKGCDESLLDT 426 Query: 311 MVQAYPH-ILYISCNPDSLCRDLSILSTT-HTIERLALFDQFPYTRHMECGVLLVR 364 +V+ P I+Y+SC+ +L RDL +L+ + ++ DQF +T H+EC LLVR Sbjct: 427 IVKMSPERIVYVSCDSATLARDLGLLAAKGYKTVKVQPVDQFSHTVHVECVCLLVR 482 >gi|91227846|ref|ZP_01262019.1| 23S rRNA (uracil-5-)-methyltransferase [Vibrio alginolyticus 12G01] gi|91188356|gb|EAS74652.1| 23S rRNA (uracil-5-)-methyltransferase [Vibrio alginolyticus 12G01] Length = 439 Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 57/189 (30%), Positives = 94/189 (49%), Gaps = 27/189 (14%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 N+F Q N G+N M++ + + D +L+L+CG GNFSL +A+ V+ VE Sbjct: 268 NNFIQVNQGVNQQMVKQAVEWLDPQKSDRVLDLFCGLGNFSLPVAKLAKHVVGVEGVAEM 327 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY---RFKTIFVDPP 300 VE A N + N +NN +F A N +D + ++ RF + +DP Sbjct: 328 VEKATNNASLNQINNA--------QFYHA-------NLEQDFEGQAWAAERFDKVLLDPA 372 Query: 301 RSG----LDDATVGMVQAYPHILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRH 355 R+G +D + Q ++Y+SCNP +L RD S++ + + +L + D FP+T H Sbjct: 373 RAGASGIIDQVSELGAQ---RVVYVSCNPATLARDSQSLIEQGYQLTKLGMLDMFPHTSH 429 Query: 356 MECGVLLVR 364 +E L + Sbjct: 430 LESMALFEK 438 >gi|153814681|ref|ZP_01967349.1| hypothetical protein RUMTOR_00896 [Ruminococcus torques ATCC 27756] gi|145848175|gb|EDK25093.1| hypothetical protein RUMTOR_00896 [Ruminococcus torques ATCC 27756] Length = 458 Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 67/229 (29%), Positives = 106/229 (46%), Gaps = 23/229 (10%) Query: 142 LHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEW 201 LH + + ++++T++ +D+ E+L L ++ SF QPN + E Sbjct: 249 LHILNDSLSDVVKSDETRVLYGQDFFYEKLL----GLQFKITPFSFFQPNTKGAEVLYET 304 Query: 202 VLAATKGIQG-DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK 260 V I + +L+ G G S LA +V+ VEI + +VEAA+ N N ++N + Sbjct: 305 VREYIGDIHDLTVFDLFSGTGTISQALAPVAKKVIGVEIVEEAVEAAKENAERNGLSNCE 364 Query: 261 IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HI 318 + F L DI + I +DPPR G+ + + Y I Sbjct: 365 FIAGDV------------FEVLDDI---KEKPDVIILDPPRDGIHPKALPKILDYGVDRI 409 Query: 319 LYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVRKP 366 +YISC SL RDL ++ +T+E++ DQF T H+E VLL RKP Sbjct: 410 VYISCKMTSLARDLELIQQRGYTVEKMTAVDQFCETVHVETAVLLTRKP 458 >gi|315179124|gb|ADT86038.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio furnissii NCTC 11218] Length = 443 Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 66/218 (30%), Positives = 104/218 (47%), Gaps = 38/218 (17%) Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHM----LEWVLAATKGIQGDLLE 215 +C D E AG T+ + + ++F Q N +N M L W+ + +L+ Sbjct: 249 VCGDGAVYGE----AGVTIPF--LPSNFIQVNQQVNQAMVAQALAWLAVTPDTPEERVLD 302 Query: 216 LYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275 L+CG GNFSL LA+ +V+ VE VE A+ N N ++NV F QA Sbjct: 303 LFCGLGNFSLPLAKLAKQVVGVEGIDDMVERAKANATRNDLHNV--------SFYQA--- 351 Query: 276 EREFNRLKDIDIHSY---RFKTIFVDPPRSGLDDATVGMVQ-----AYPHILYISCNPDS 327 N +D+ ++ +F + +DP R+G G+V ++Y+SCNP + Sbjct: 352 ----NLEQDMTGETWAAEKFDKVLLDPARAG----AAGIVDQLAALGAKRVVYVSCNPAT 403 Query: 328 LCRDL-SILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 L RD S+LS + +L + D FP+T H+E L V+ Sbjct: 404 LARDSQSLLSQGFQLVKLGMLDMFPHTSHLESMALFVK 441 >gi|283786672|ref|YP_003366537.1| 23s rRNA (uracil-5-)-methyltransferase [Citrobacter rodentium ICC168] gi|282950126|emb|CBG89762.1| 23s rRNA (uracil-5-)-methyltransferase [Citrobacter rodentium ICC168] Length = 432 Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 58/185 (31%), Positives = 88/185 (47%), Gaps = 21/185 (11%) Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 F Q N G+N M+ LA + D +L+L+CG GNF+L LA V+ VE VE Sbjct: 263 FIQVNEGVNQQMVARALAWLEVQPTDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVE 322 Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDPPRS 302 + N N ++NV + +E D+ + F + +DP R+ Sbjct: 323 KGQENARQNELHNVTFFHANLEE---------------DVTRQPWAKSGFDKVLLDPARA 367 Query: 303 GLDDATVGMVQAYP-HILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGV 360 G +++ P I+Y+SCNP +L RD +L + I+RLA+ D FP+T H+E Sbjct: 368 GAAGVMQHIIKLQPRRIVYVSCNPATLARDSEQLLRAGYQIQRLAMLDMFPHTGHLESMA 427 Query: 361 LLVRK 365 L K Sbjct: 428 LFEHK 432 >gi|269965227|ref|ZP_06179361.1| 23S rRNA (uracil-5-)-methyltransferase [Vibrio alginolyticus 40B] gi|269830213|gb|EEZ84440.1| 23S rRNA (uracil-5-)-methyltransferase [Vibrio alginolyticus 40B] Length = 439 Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 57/189 (30%), Positives = 94/189 (49%), Gaps = 27/189 (14%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 N+F Q N G+N M++ + + D +L+L+CG GNFSL +A+ V+ VE Sbjct: 268 NNFIQVNQGVNQQMVKQAVEWLDPQKSDRVLDLFCGLGNFSLPVAKLAKHVVGVEGVAEM 327 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY---RFKTIFVDPP 300 VE A N + N +NN +F A N +D + ++ RF + +DP Sbjct: 328 VEKATNNASLNQINNA--------QFYHA-------NLEQDFEGQAWAAERFDKVLLDPA 372 Query: 301 RSG----LDDATVGMVQAYPHILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRH 355 R+G +D + Q ++Y+SCNP +L RD S++ + + +L + D FP+T H Sbjct: 373 RAGASGIIDQVSELGAQ---RVVYVSCNPATLARDSQSLIEQGYKLTKLGMLDMFPHTSH 429 Query: 356 MECGVLLVR 364 +E L + Sbjct: 430 LESMALFEK 438 >gi|258646651|ref|ZP_05734120.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Dialister invisus DSM 15470] gi|260404073|gb|EEW97620.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Dialister invisus DSM 15470] Length = 468 Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 51/157 (32%), Positives = 79/157 (50%), Gaps = 19/157 (12%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G SL LA+ RV+ +EI KP++E A+ N NH+ N + + + Sbjct: 323 VIDAYCGTGTISLCLAKKAKRVIGIEIVKPAIEDAKKNAKKNHMENTEFYAADAGKLMPQ 382 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD----ATVGMVQAYPHILYISCNPDSL 328 + R+ + D+ I +DP R+G + A GM I+Y+SCNP + Sbjct: 383 LYRQ---GLVPDV---------IVMDPVRAGCSEEVLKAAAGMNPK--RIVYVSCNPATF 428 Query: 329 CRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364 RD IL S + I+ + D FP T H+E VL+ R Sbjct: 429 ARDAKILKSEGYEIKEVQPVDMFPQTMHVETVVLMSR 465 >gi|227543578|ref|ZP_03973627.1| TrmA family tRNA (uracil-5-)-methyltransferase [Lactobacillus reuteri CF48-3A] gi|300909393|ref|ZP_07126854.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus reuteri SD2112] gi|227186418|gb|EEI66489.1| TrmA family tRNA (uracil-5-)-methyltransferase [Lactobacillus reuteri CF48-3A] gi|300893258|gb|EFK86617.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus reuteri SD2112] Length = 478 Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 49/164 (29%), Positives = 82/164 (50%), Gaps = 18/164 (10%) Query: 208 GIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265 G+ G+ +++ YCG G SL +A+H +V VEI ++E A++N N + N K V Sbjct: 326 GLDGNQTVIDAYCGIGTISLAVAKHAKQVYGVEIVPAAIEDAKHNAKRNSIKNAKFV--- 382 Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISC 323 + E +F + + + + + VDPPR GL ++ + ++Y+SC Sbjct: 383 ------VGKAEEQFAKWQAAGL---KPDVVIVDPPRKGLAESLIEATGKMGPKKVIYVSC 433 Query: 324 NPDSLCRDLSILSTT--HTIERLALFDQFPYTRHMECGVLLVRK 365 NP +L RD+ + H + + DQFP T H+E +L RK Sbjct: 434 NPATLVRDIKRFADQGYHVTKPIQPVDQFPQTTHVESVTVLERK 477 >gi|240146924|ref|ZP_04745525.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Roseburia intestinalis L1-82] gi|257200907|gb|EEU99191.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Roseburia intestinalis L1-82] Length = 565 Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 55/156 (35%), Positives = 81/156 (51%), Gaps = 9/156 (5%) Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274 +LYCG G SL LA+ +V VEI ++E A+ N A N +NN + ++E A Sbjct: 325 DLYCGIGTISLFLAQKAGKVYGVEIIPQAIEDAKNNAALNGINNAEFFVGKAEEVLPAF- 383 Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCRDL 332 + + KD D I VDPPR G D + M++ P I+Y+SC+ +L RDL Sbjct: 384 ----YEKKKDTDADMLHPDVIVVDPPRKGCDGVCLETMLKMQPERIVYVSCDSATLARDL 439 Query: 333 SIL-STTHTIERLALFDQFPYTRHMECGVLLV-RKP 366 +L + + ++ DQF T H+E VLL +KP Sbjct: 440 KVLCEGGYELCKVRAVDQFGNTTHVETVVLLSQQKP 475 >gi|295400536|ref|ZP_06810514.1| RNA methyltransferase, TrmA family [Geobacillus thermoglucosidasius C56-YS93] gi|294977439|gb|EFG53039.1| RNA methyltransferase, TrmA family [Geobacillus thermoglucosidasius C56-YS93] Length = 459 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 50/156 (32%), Positives = 77/156 (49%), Gaps = 17/156 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G SL LA+ +V VE+ ++E A+ N A N + NV+ ++ Sbjct: 314 VIDAYCGIGTISLFLAKKAKKVFGVEVVPEAIEDAKRNAALNRITNVEFAVGEAEAVIPK 373 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330 ++ R I VDPPR G D+ + + A ++Y+SCNP +L R Sbjct: 374 WYKQ------------GIRADCIVVDPPRKGCDETLLQTIIAMKPKRVVYVSCNPATLAR 421 Query: 331 DLSIL--STTHTIERLALFDQFPYTRHMECGVLLVR 364 DL IL T+E + D FP+T H+EC L+ R Sbjct: 422 DLRILEDGGYQTLE-VQPVDMFPHTAHVECCALIKR 456 >gi|238920899|ref|YP_002934414.1| 23S rRNA 5-methyluridine methyltransferase [Edwardsiella ictaluri 93-146] gi|259495630|sp|C5B8X6|RUMA_EDWI9 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|238870468|gb|ACR70179.1| 23S rRNA (uracil-5-)-methyltransferase RumA, putative [Edwardsiella ictaluri 93-146] Length = 438 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 64/190 (33%), Positives = 95/190 (50%), Gaps = 25/190 (13%) Query: 180 YRQIENS--------FTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLAR 229 Y QI+ S F Q NA +N M+ LA ++ D +L+L+CG GNF+L LAR Sbjct: 252 YYQIDGSRLDFNPQDFIQVNAAVNAQMVGQALAWLD-VRADERVLDLFCGMGNFTLPLAR 310 Query: 230 HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHS 289 RV+ VE V A+ N N ++NV+ F Q + E + R S Sbjct: 311 LALRVVGVEGVPGLVATAQNNARNNGLSNVEF-------FHQNL--EEDVTRQA---WAS 358 Query: 290 YRFKTIFVDPPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALF 347 F I +DP R+G +V+ P ++Y+SCNP +L RD ++L + + RL + Sbjct: 359 QGFDKILLDPARAGAPGVMQHIVRLAPRRVVYVSCNPTTLARDSQTLLQGGYRLTRLCML 418 Query: 348 DQFPYTRHME 357 D FP+T H+E Sbjct: 419 DMFPHTGHLE 428 >gi|330446947|ref|ZP_08310598.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328491138|dbj|GAA05095.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 439 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 64/206 (31%), Positives = 93/206 (45%), Gaps = 30/206 (14%) Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLE----WVLAATKGIQGDLLELYCGN 220 D D RLT + + F Q N +N M+E W+ Q +L+L+CG Sbjct: 257 DIEDVRLTFSPK---------DFIQVNRAVNQKMVEQAINWLDVQP---QDRVLDLFCGL 304 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 GNFSL LAR V+ VE V A N AN ++N + + E + +E Sbjct: 305 GNFSLPLARSAKAVVGVEGVDEMVARATANAVANRLDNATFYQANLDEDVTKLVWAQE-- 362 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDLSI-LSTT 338 +F I +DP R+G +V P ++Y+SCNP +L RD I L Sbjct: 363 ----------QFDKILLDPARAGAAGVMQHIVNLAPSKVVYVSCNPATLARDSQILLQQG 412 Query: 339 HTIERLALFDQFPYTRHMECGVLLVR 364 + + RL + D FP+T H+E L V+ Sbjct: 413 YKLARLGMMDMFPHTGHLESMALFVK 438 >gi|298242700|ref|ZP_06966507.1| RNA methyltransferase, TrmA family [Ktedonobacter racemifer DSM 44963] gi|297555754|gb|EFH89618.1| RNA methyltransferase, TrmA family [Ktedonobacter racemifer DSM 44963] Length = 442 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 58/214 (27%), Positives = 101/214 (47%), Gaps = 34/214 (15%) Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL--------AATKGIQGDLLEL 216 + ++E+L G+ I+R +SF Q N M+ VL A Q +++ Sbjct: 245 ETIEEKL--GGK--IFRIRPSSFFQTNTPQAEKMVRMVLDGLLAHRPAEKDPAQLTIVDA 300 Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276 YCG G F+L++A HF R++A+E + ++ A +N NN++I++ ++ + Sbjct: 301 YCGVGTFALLMAHHFGRIIAIEESPSAIRDAHWN--TRDTNNIEILKGKVEDVLPGL--- 355 Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSI 334 S + +DPPR+G + + YP ++Y+SC P +L RDL + Sbjct: 356 ------------SAQVDGFVIDPPRAGCQPVVLETLLRYPVERVVYVSCEPSTLARDLDV 403 Query: 335 LS---TTHTIERLALFDQFPYTRHMECGVLLVRK 365 L T+ + + D FP T H+EC +L R Sbjct: 404 LCHGDETYQLVSVQPLDMFPQTAHIECVAVLERN 437 >gi|212634201|ref|YP_002310726.1| 23S rRNA 5-methyluridine methyltransferase [Shewanella piezotolerans WP3] gi|226725392|sp|B8CJP2|RUMA_SHEPW RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|212555685|gb|ACJ28139.1| RNA methyltransferase, TrmA family [Shewanella piezotolerans WP3] Length = 445 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 96/375 (25%), Positives = 162/375 (43%), Gaps = 56/375 (14%) Query: 11 EQQLAEKVDRLRQMMLAF-QVPNLQIFRS---EPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66 E Q A K L++++ F Q Q+ + P HYR RA W FD++ Sbjct: 100 ESQRAHKAKALQELVAKFAQTTASQVCETLSDSPWHYRRRARLATW----------FDKK 149 Query: 67 TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQ-SDQAIVTLIYHR 125 TK + + + S + ++E+ + + L L A + ++ +L +Q S + + + Sbjct: 150 TK-HISLGFRASSS----SDVVEIQSCVVLAKPLSALIPELAFLLNQLSGKKALGHVELT 204 Query: 126 LLDDAWRECAIRLRDALHARKYQ-IQLIGRANKTKICL-DRDYVDERLTVAGRTLIY--- 180 L D+ +R+ AL + Q + G ++ + L D D E L+ G+ Y Sbjct: 205 LADNGIF-VVLRVTKALSDKDRQRLAEFGASHSLNMLLQDDDANTESLSGHGQQPFYSFN 263 Query: 181 ------RQIENSFTQPNAGINVHML----EWVLAATKGIQGDLLELYCGNGNFSLVLARH 230 + +F Q NA +N M+ +W+ +L+L+CG GNFSL LA+ Sbjct: 264 DSDAELKFSAGNFIQVNASVNQAMVNQAVDWLAPQA---NERVLDLFCGIGNFSLPLAKS 320 Query: 231 FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNRLKDIDIHS 289 V+ VE VE A N ++ V S + +Q L +D Sbjct: 321 GAEVIGVEGVPAMVEQATVNAKGAALDKVSFYHADLSADLSQQ-------PWLGKVD--- 370 Query: 290 YRFKTIFVDPPRSGLDDATVGMVQAYPHIL-YISCNPDSLCRDLS-ILSTTHTIERLALF 347 + +DP R+G ++ + + + P L Y+SCNP SL RD IL + + ++A+ Sbjct: 371 ----KMLIDPARAGAYESMLSLKKLKPQALVYVSCNPASLARDSEVILKQGYRLTKIAMV 426 Query: 348 DQFPYTRHMECGVLL 362 D FP T H+E L Sbjct: 427 DMFPQTHHLESMALF 441 >gi|160903249|ref|YP_001568830.1| RNA methyltransferase [Petrotoga mobilis SJ95] gi|160360893|gb|ABX32507.1| RNA methyltransferase, TrmA family [Petrotoga mobilis SJ95] Length = 446 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 59/183 (32%), Positives = 93/183 (50%), Gaps = 21/183 (11%) Query: 186 SFTQPNAGINVHMLEWVLAATKG-IQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 SF Q N + +L +L K Q D +L+LY G G FS+ + F + +VE +K Sbjct: 275 SFFQNNYNVTQKLLRHILEYFKSNAQKDATMLDLYSGVGLFSIYFSPLFKHIESVETSKV 334 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302 SV+AA N N NV + SSK + M+ S RF + +DPPR Sbjct: 335 SVKAAIANSHINFTKNVNFILASSKPY--LMKNS------------SKRFDYVILDPPRK 380 Query: 303 GLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTT-HTIERLALFDQFPYTRHME-C 358 GL+ + ++ A I+Y+SC+P + RDL++ + T++ + FD FP++ H+E Sbjct: 381 GLEKKEIQLLSSMAKKGIIYVSCDPSTFARDLNLFTKNGFTLKSVQPFDMFPHSYHIENV 440 Query: 359 GVL 361 G+L Sbjct: 441 GIL 443 >gi|312112373|ref|YP_003990689.1| RNA methyltransferase, TrmA family [Geobacillus sp. Y4.1MC1] gi|311217474|gb|ADP76078.1| RNA methyltransferase, TrmA family [Geobacillus sp. Y4.1MC1] Length = 459 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 50/156 (32%), Positives = 77/156 (49%), Gaps = 17/156 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G SL LA+ +V VE+ ++E A+ N A N + NV+ ++ Sbjct: 314 VIDAYCGIGTISLFLAKKAKKVFGVEVVPEAIEDAKRNAALNRITNVEFAVGEAEAVIPK 373 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330 ++ R I VDPPR G D+ + + A ++Y+SCNP +L R Sbjct: 374 WYKQ------------GIRADCIVVDPPRKGCDETLLQTIIAMKPKRVVYVSCNPATLAR 421 Query: 331 DLSIL--STTHTIERLALFDQFPYTRHMECGVLLVR 364 DL IL T+E + D FP+T H+EC L+ R Sbjct: 422 DLRILEDGGYQTLE-VQPVDMFPHTAHVECCALIKR 456 >gi|291541326|emb|CBL14437.1| SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Roseburia intestinalis XB6B4] Length = 621 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 64/225 (28%), Positives = 108/225 (48%), Gaps = 19/225 (8%) Query: 155 ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-- 212 K + + Y+++ T+ G T +R SF Q N + +L G+ G Sbjct: 297 GEKETVIYGKGYIED--TLCGCT--FRISPKSFYQVNP-VQTEILYTKAIEYAGLTGKER 351 Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G L+ A V++VE+ + +V A N N + NV+ + +F Sbjct: 352 IVDAYCGIGTIGLIAASKAKEVISVELNRDAVRDAVTNAKRNDIKNVQFYNADAGQFMVE 411 Query: 273 M---RREREFNRLKDIDIHSYR------FKTIFVDPPRSGLDDATVGMV--QAYPHILYI 321 M R +++ N++ D + +F+DPPR+G D+A + V A ++YI Sbjct: 412 MAEYRADQKKNQVPDATKSGKKATPDGNVDVVFMDPPRAGSDEAFLSSVIRLAPKRVVYI 471 Query: 322 SCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVRK 365 SCNP++L RDL L+ + + D FP+T+H+E VLL K Sbjct: 472 SCNPETLARDLKYLTKHGYQAKECQPVDLFPWTKHVETVVLLSHK 516 >gi|15836418|ref|NP_300942.1| rRNA methyltransferse [Chlamydophila pneumoniae J138] gi|16752151|ref|NP_445518.1| RNA methyltransferase [Chlamydophila pneumoniae AR39] gi|33242245|ref|NP_877186.1| protein Hom1 [Chlamydophila pneumoniae TW-183] gi|12644494|sp|Q9Z721|Y885_CHLPN RecName: Full=Uncharacterized RNA methyltransferase CPn_0885/CP_0981/CPj0885/CpB0914 gi|8163534|gb|AAF73721.1| RNA methyltransferase, TrmA family [Chlamydophila pneumoniae AR39] gi|8979259|dbj|BAA99093.1| rRNA methyltransferse [Chlamydophila pneumoniae J138] gi|33236756|gb|AAP98843.1| protein Hom1 [Chlamydophila pneumoniae TW-183] Length = 401 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 71/254 (27%), Positives = 119/254 (46%), Gaps = 36/254 (14%) Query: 129 DAWRECAIRLRDALH------ARKYQIQLIGRANKTKICLDRDYVDERLTVA--GRTLIY 180 D W+E I L +L+ K + I +TK+ + ++L++ G + + Sbjct: 164 DEWKE--ILLSSSLNIASIYWEEKVAARGISTYYETKLLYGAPSIQQKLSLPSDGNSASF 221 Query: 181 RQIENSFTQPNAGINVHMLEWVLAATKGIQGD----LLELYCGNGNFSLVLARHFDRVLA 236 SF QP ++E A + I + LL+LYCG G ++L+ + V+ Sbjct: 222 SLRPRSFFQPQITQAAKIIE---TAKEFINPEGSETLLDLYCGAGTIGIMLSPYVKNVIG 278 Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296 VEI +V +A+ NI AN+ + V + E +A + E + D+ I Sbjct: 279 VEIIPDAVASAQENIKANNKEDCVEVYL---EDAKAFCKRNENCKAPDV---------II 326 Query: 297 VDPPRSGLDDATVGMVQ--AYPHILYISCNPDSL---CRDLSILSTTHTIERLALFDQFP 351 +DPPR G+ + + P I+YISCNP + C DL +S + I+++ DQFP Sbjct: 327 IDPPRCGMQSKVLKYILRIGSPKIVYISCNPKTQFQECADL--ISGGYRIKKMQPIDQFP 384 Query: 352 YTRHMECGVLLVRK 365 Y+ H+E +LL R+ Sbjct: 385 YSTHLENIILLERE 398 >gi|167464623|ref|ZP_02329712.1| TRNA (uracil-5-)-methyltransferase-related protein [Paenibacillus larvae subsp. larvae BRL-230010] gi|322381560|ref|ZP_08055534.1| RNA methyltransferase-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321154454|gb|EFX46756.1| RNA methyltransferase-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 550 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 66/213 (30%), Positives = 99/213 (46%), Gaps = 28/213 (13%) Query: 166 YVDERLTVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGD--LLE 215 + DE + GR +IY I + SF Q N + +L G+ G +++ Sbjct: 349 FGDETKVLWGREVIYDYIGDVKFAISPRSFYQVNP-VQTEVLYRKTLEYAGLIGKETVVD 407 Query: 216 LYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275 YCG G SL LA+H +V VEI ++E A+ N N V+N + ++E +R Sbjct: 408 AYCGIGTISLFLAKHARKVYGVEIVPEAIEDAKRNAELNGVSNAEFAAGKAEEVLPGWQR 467 Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYPH-ILYISCNPDSLCRDLS 333 R I VDPPR G D + + + P ++Y+SCN +L RDL Sbjct: 468 A------------GVRPDVIVVDPPRKGCDAVLLDTILRLRPERVVYVSCNASTLARDLR 515 Query: 334 IL--STTHTIERLALFDQFPYTRHMECGVLLVR 364 +L T+E + D FP+T H+EC VL+ R Sbjct: 516 VLEDGGYRTVE-VQPVDMFPHTVHVECVVLMSR 547 >gi|319896666|ref|YP_004134859.1| 23S rRNA (uracil-5-)-methyltransferase ruma [Haemophilus influenzae F3031] gi|317432168|emb|CBY80519.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Haemophilus influenzae F3031] Length = 438 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 58/183 (31%), Positives = 87/183 (47%), Gaps = 17/183 (9%) Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 F Q N +N M+ L + Q D +L+L+CG GNF+L LA+ + +E V+ Sbjct: 269 FIQVNRVLNERMVNTALDWLELNQQDCVLDLFCGMGNFTLPLAKRVKSAVGIEGVFEMVQ 328 Query: 246 AARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 A N N + N++ + + F + + FN+ I +DPPRSG Sbjct: 329 KAAQNAERNQIKNIEFFQADLDQSFVEQPWANQSFNK-------------ILLDPPRSGA 375 Query: 305 DDATVGMVQ-AYPHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLL 362 A + + ILY+SCNP +L RD IL + IE+ A+ D FP+T H+E L Sbjct: 376 AFALNALCELKAEKILYVSCNPATLVRDAGILCDFGYKIEKSAVIDMFPHTGHLESITLF 435 Query: 363 VRK 365 K Sbjct: 436 TTK 438 >gi|15618794|ref|NP_225080.1| rRNA methyltransferse [Chlamydophila pneumoniae CWL029] gi|4377204|gb|AAD19023.1| rRNA Methyltransferse [Chlamydophila pneumoniae CWL029] Length = 401 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 70/252 (27%), Positives = 118/252 (46%), Gaps = 32/252 (12%) Query: 129 DAWRECAIRLRDALH------ARKYQIQLIGRANKTKICLDRDYVDERLTVA--GRTLIY 180 D W+E I L +L+ K + I +TK+ + ++L++ G + + Sbjct: 164 DEWKE--ILLSSSLNIASIYWEEKVAARGISTYYETKLLYGAPSIQQKLSLPSDGNSASF 221 Query: 181 RQIENSFTQPNAGINVHMLEWV--LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVE 238 SF QP ++E +G + LL+LYCG G ++L+ + V+ VE Sbjct: 222 SLRPRSFFQPQITQAAKIIETAKEFINPEGSE-TLLDLYCGAGTIGIMLSPYVKNVIGVE 280 Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298 I +V +A+ NI AN+ + V + E +A + E + D+ I +D Sbjct: 281 IIPDAVASAQENIKANNKEDCVEVYL---EDAKAFCKRNENCKAPDV---------IIID 328 Query: 299 PPRSGLDDATVGMVQ--AYPHILYISCNPDSL---CRDLSILSTTHTIERLALFDQFPYT 353 PPR G+ + + P I+YISCNP + C DL +S + I+++ DQFPY+ Sbjct: 329 PPRCGMQSKVLKYILRIGSPKIVYISCNPKTQFQECADL--ISGGYRIKKMQPIDQFPYS 386 Query: 354 RHMECGVLLVRK 365 H+E +LL R+ Sbjct: 387 THLENIILLERE 398 >gi|257869135|ref|ZP_05648788.1| RNA methyltransferase [Enterococcus gallinarum EG2] gi|257803299|gb|EEV32121.1| RNA methyltransferase [Enterococcus gallinarum EG2] Length = 458 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 96/387 (24%), Positives = 159/387 (41%), Gaps = 53/387 (13%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHDGDD----- 57 YE+QL K D L+Q + F+ Q I EP HYR +A+F + +D Sbjct: 92 YEKQLDFKKDLLKQALTKFKPKGYQKYILKDTIGMEEPWHYRNKAQFQLRYDTKSKRIEA 151 Query: 58 -LYHI-------MFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDY 109 LY + + D +E+ D L+N + + + +LR + ++ Sbjct: 152 GLYEMDSHRLVAIDDCLVQEKATQDVINGLVQLLNKYQLPIYDERKNSGILRTLMVRVGR 211 Query: 110 LTSQSDQAIVTLIYHRLLDDAW-RECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVD 168 T + +T +A RE R+ + I ++ KT + + D Sbjct: 212 ATGEVQVVFITNSSKLPQKNALIREINQRMPQVVS-----IMQNVQSKKTSVIMG----D 262 Query: 169 ERLTVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCG 219 E L + G+ I +++ +F Q N + + + A + + +++ YCG Sbjct: 263 ETLHLWGKEAIEERLQELTFDLSPRAFFQLNPQQTSILYDEAIKALALTKNETVVDAYCG 322 Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279 G L LA+H V ++I ++E A+ N NN ++++ Sbjct: 323 VGTIGLSLAKHAKEVRGMDIIPQAIENAKENARRIQANNTHYETGTAEDL---------- 372 Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILST 337 L +R +I VDPPR+GLDD + + A P ++YISCN +L RDL L++ Sbjct: 373 --LPKWFAAGFRPDSIVVDPPRTGLDDHLLQALVAQPPKKMVYISCNVSTLARDLVKLAS 430 Query: 338 THTIERLALFDQFPYTRHMECGVLLVR 364 IE L D FP T E V L R Sbjct: 431 VFKIEYLQSVDMFPQTARCEVVVKLTR 457 >gi|256544972|ref|ZP_05472341.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Anaerococcus vaginalis ATCC 51170] gi|256399339|gb|EEU12947.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Anaerococcus vaginalis ATCC 51170] Length = 455 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 66/267 (24%), Positives = 122/267 (45%), Gaps = 43/267 (16%) Query: 100 LRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTK 159 +R LF + L +++ IV+ IYH + D L DA+ + + + Sbjct: 225 MRRDLFAHNLLNAKTKGRIVS-IYHVINDS--------LSDAV-----------KVDSIE 264 Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYC 218 + + Y++E++ L ++ SF QPN + + + A ++L+LY Sbjct: 265 LLFGKKYIEEKMN----DLKFQISPFSFFQPNVYTAEKIYQKAIELANVDKNKNVLDLYS 320 Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278 G G + + A+ ++ + +EI + +VE A N N + N+ + Sbjct: 321 GTGTITQLFAKSANKAMGIEIIEEAVEKAFDNAKENEIENINFIAG-------------- 366 Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGL-DDATVGMVQAYP-HILYISCNPDSLCRDLSI-L 335 + L+ ID+ ++ + +DPPR G+ A ++ P +YISCNP + RDL I + Sbjct: 367 -DVLEKIDLVKGKYDIVVIDPPREGIHPKAIKKIIDISPEEFVYISCNPKTQVRDLEIFI 425 Query: 336 STTHTIERLALFDQFPYTRHMECGVLL 362 + I++ FDQFP +RH+E L+ Sbjct: 426 KNGYKIKKYQAFDQFPRSRHVETIALI 452 >gi|160933690|ref|ZP_02081078.1| hypothetical protein CLOLEP_02551 [Clostridium leptum DSM 753] gi|156867567|gb|EDO60939.1| hypothetical protein CLOLEP_02551 [Clostridium leptum DSM 753] Length = 460 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 49/153 (32%), Positives = 78/153 (50%), Gaps = 15/153 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +L+LYCG G + +A +V+ VE+ ++E A+ N N V N++ + S + Q Sbjct: 311 VLDLYCGTGTIGMTMASKAGKVIGVEVVPEAIEDAKANAVRNGVKNIEFICGDSAQAVQM 370 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCR 330 +R+ E R + VDPPR G + +V+ P I+Y+SC+P +L R Sbjct: 371 LRKRGE------------RPTVVVVDPPRKGCGLPVLEHIVEIAPRKIIYVSCDPATLAR 418 Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMECGVLL 362 DL +L + ++ LA D FP T H+E LL Sbjct: 419 DLKLLVKAGYCLQTLAPVDLFPRTAHVETVALL 451 >gi|197284125|ref|YP_002149997.1| 23S rRNA 5-methyluridine methyltransferase [Proteus mirabilis HI4320] gi|227358009|ref|ZP_03842351.1| 23S rRNA (uracil-5-)-methyltransferase [Proteus mirabilis ATCC 29906] gi|226725384|sp|B4EUF2|RUMA_PROMH RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|194681612|emb|CAR40617.1| 23S rRNA (uracil-5-)-methyltransferase [Proteus mirabilis HI4320] gi|227161744|gb|EEI46776.1| 23S rRNA (uracil-5-)-methyltransferase [Proteus mirabilis ATCC 29906] Length = 441 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 57/183 (31%), Positives = 90/183 (49%), Gaps = 17/183 (9%) Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 F Q N IN M+ +A D +L+L+CG GNF+L +A+ D+V+ VE V Sbjct: 272 FIQVNDEINHKMVAQAIAWLDLSPNDRVLDLFCGMGNFTLPMAKRVDKVVGVEGVPALVA 331 Query: 246 AARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 A+ N N ++NV+ S +F+ + FN+ + +DP R+G Sbjct: 332 MAKKNAELNQLDNVQFWHADLSADFSAMPWAQEGFNK-------------VLLDPARAGA 378 Query: 305 DDATVGMVQ-AYPHILYISCNPDSLCRDLSI-LSTTHTIERLALFDQFPYTRHMECGVLL 362 +V + I+Y+SCNP +L RD I L + + + +L + D FP T H+E L Sbjct: 379 AQVMSHIVTLSAEKIVYVSCNPTTLARDSKILLDSGYQLTQLRMLDMFPQTGHLESMALF 438 Query: 363 VRK 365 +RK Sbjct: 439 IRK 441 >gi|327481361|gb|AEA84671.1| 23S rRNA 5-methyluridine methyltransferase [Pseudomonas stutzeri DSM 4166] Length = 450 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 99/367 (26%), Positives = 147/367 (40%), Gaps = 53/367 (14%) Query: 21 LRQMMLAFQVPNLQIFR----SEPI-----HYRMRAEFHI-WHDGDDLYHIMF-DQQTKE 69 L+Q L Q+ L + +EP+ YR RA + WH D + F +++ Sbjct: 113 LKQRTLGEQLARLAELKPERWAEPLTGPAFGYRRRARLAVRWHTRDKRLEVGFRSTASQD 172 Query: 70 RMRID----YFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHR 125 + ID P L+ L+ + + + + +LF S A LI H Sbjct: 173 IVAIDQCPVLVQPLQTLLPGLLEALHGLTKPQAIGHVELF--------SGTAEAVLIRHT 224 Query: 126 L----LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYR 181 +D A RLR A + Q+ L G + + + + RL L +R Sbjct: 225 APLPEIDLA------RLRTFTRAHQAQLWLQGE-GEPQADVPGQALGYRLEAWDLELAWR 277 Query: 182 QIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIA 240 F Q NA +N M+ L+ G+ +L+L+CG GNFSL L R +V+ VE Sbjct: 278 --PGDFVQVNAPVNEAMVAQALSWLGASAGERVLDLFCGLGNFSLPLGRQGAQVVGVEGV 335 Query: 241 KPSVEAARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299 + V A+ N N + V R SK L D F + +DP Sbjct: 336 EAMVARAQDNAQRNGLEQVHFYRADLSKP-------------LADAPWARSGFDAVLLDP 382 Query: 300 PRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHME 357 PR G + M Q ++Y+SCNP +L RD + S ++R L D FP T H E Sbjct: 383 PRDGALEIVRQMTQLQARRVVYVSCNPATLARDARELASQGFRLKRAGLLDMFPQTAHAE 442 Query: 358 CGVLLVR 364 L R Sbjct: 443 AMALFER 449 >gi|189485521|ref|YP_001956462.1| putative RNA methyltransferase [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|170287480|dbj|BAG14001.1| putative RNA methyltransferase [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 449 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 57/213 (26%), Positives = 99/213 (46%), Gaps = 20/213 (9%) Query: 155 ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNA-GINVHMLEWVLAATKGIQGDL 213 A++ + + ++ ERL + G+ + SF Q N+ + E + L Sbjct: 250 ADRLTLMCGKPFITERLNIGGKDYFFDISPFSFFQTNSKATEILYTEILRLLNPSKYTVL 309 Query: 214 LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273 L+LYCG G + +A + RV+ VE +++ A+ N AN+V N + ++++ + Sbjct: 310 LDLYCGTGAIGISMAHNVKRVIGVECIGQAIDNAKENALANNVFNAEFYASDAEDWIKEN 369 Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRD 331 + F + VDPPRSGL + + I+Y+SCNP +L RD Sbjct: 370 KS---------------CFDAVVVDPPRSGLTKDIIKFLLESKAKRIIYVSCNPSTLARD 414 Query: 332 LSILS--TTHTIERLALFDQFPYTRHMECGVLL 362 L +++ + I+ + D FP T H+E VLL Sbjct: 415 LQLITENSKCKIKEIIPVDMFPQTYHIETVVLL 447 >gi|331089004|ref|ZP_08337911.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lachnospiraceae bacterium 3_1_46FAA] gi|330406456|gb|EGG85969.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lachnospiraceae bacterium 3_1_46FAA] Length = 500 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 58/173 (33%), Positives = 87/173 (50%), Gaps = 17/173 (9%) Query: 208 GIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265 G++GD + +LYCG G SL LA+ +V VEI P+++ AR N N + N + Sbjct: 332 GLKGDETVWDLYCGIGTISLFLAQKAKQVYGVEIVPPAIDDARENALLNGIENAQFFVGK 391 Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYPH-ILYISC 323 S+E ++ E + H+ I VDPPR G D + + + P I+Y+SC Sbjct: 392 SEEILPKYYKDYEEQHGGE-KAHA---DVIVVDPPRKGCDAKLLDTILKMQPERIVYVSC 447 Query: 324 NPDSLCRDLSIL---------STTHTIERLALFDQFPYTRHMECGVLLVRKPS 367 + +L RDL IL + + IE+ DQFP T H+E VL+ +K S Sbjct: 448 DSATLARDLKILCEGAQEDEKTAGYQIEKWRAVDQFPMTTHVETIVLIQKKNS 500 >gi|327438698|dbj|BAK15063.1| SAM-dependent methyltransferase [Solibacillus silvestris StLB046] Length = 458 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 91/387 (23%), Positives = 164/387 (42%), Gaps = 52/387 (13%) Query: 10 YEQQLAEKVDRLRQMMLAF-----QVPNLQ--IFRSEPIHYRMRAEFHIWHDGDDLYHIM 62 YE QL K D + Q + Q ++ I P HYR +++F + +G +Y + Sbjct: 92 YEAQLMNKRDIVVQAFEKYAKEIGQTAEIRPTIGMDNPWHYRNKSQFQVRKEGKRVYAGL 151 Query: 63 FDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKL--FQIDYLTSQSDQAIVT 120 F + T + + I N +++ T ++ R L I ++ +V Sbjct: 152 FTEGTNQLLNI----------NDCLVQHPVTSKITVATRKILQKLNIPIYDGKTLNGLVR 201 Query: 121 LIYHR--LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVA---- 174 I R + + C + R L ++ I+ I + + + + + ++ E+ ++ Sbjct: 202 TIVVRTGMRSGETQVCLVTTRRELPHKEELIERIKKIDPSIVSITQNVNREKTSLIFGPD 261 Query: 175 -----GRTLIYRQIEN--------SFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGN 220 G+ I+ ++ +F Q N VH+ E AA + ++++ YCG Sbjct: 262 TFILDGKEAIHEKLGEFAFDLSTRAFFQLNPEQTVHLYNEIKKAAALTGKENVVDAYCGV 321 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G + LA V ++ ++ A+YN N +N++ VR + + R + Sbjct: 322 GTIGMWLAEGAREVRGMDNVDEAIADAKYNARTN--DNLQHVRFFPGSADKWLFRWSK-- 377 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYPHI-LYISCNPDSLCRDLSILSTT 338 YR I VDPPR+GL+ + V + P + +Y SCNP +L RDL LS + Sbjct: 378 -------EDYRPDVICVDPPRTGLEPGFIRTVLKIKPKLFVYTSCNPSTLARDLKELSKS 430 Query: 339 HTIERLALFDQFPYTRHMECGVLLVRK 365 + +E + D FP T +EC V L K Sbjct: 431 YNVEYIQPVDMFPQTAQVECVVKLTLK 457 >gi|289578782|ref|YP_003477409.1| RNA methyltransferase, TrmA family [Thermoanaerobacter italicus Ab9] gi|289528495|gb|ADD02847.1| RNA methyltransferase, TrmA family [Thermoanaerobacter italicus Ab9] Length = 450 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 58/210 (27%), Positives = 105/210 (50%), Gaps = 31/210 (14%) Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-----LELYC 218 RDY+ E + L ++ SF Q N+ + E + + GD+ +LY Sbjct: 264 RDYLIEEIL----DLKFKISAFSFFQTNS----YGAEKLYETVREFAGDVSDKIVFDLYS 315 Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278 G G +++A +V+ +E+ + +V +AR N N + N + + + +Q ++ +E Sbjct: 316 GTGTIGIIMAPMAKKVIGIELVEEAVMSARENAKLNGLKNCTFI---AGDVSQKLKEIKE 372 Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLD-DATVGMVQAYPH-ILYISCNPDSLCRDLSILS 336 + + VDPPRSG++ A +V+ P ++Y+SCNP+SL RDL + S Sbjct: 373 ------------QPDVVIVDPPRSGINPKALKDIVKFNPQKVVYVSCNPESLARDLKVFS 420 Query: 337 -TTHTIERLALFDQFPYTRHMECGVLLVRK 365 + ++++ D FPYT H+E VL+ +K Sbjct: 421 EGGYKVDKVKCVDMFPYTYHVETVVLMEKK 450 >gi|125974255|ref|YP_001038165.1| RNA methyltransferase [Clostridium thermocellum ATCC 27405] gi|125714480|gb|ABN52972.1| 23S rRNA m(5)U-1939 methyltransferase [Clostridium thermocellum ATCC 27405] Length = 453 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 49/156 (31%), Positives = 78/156 (50%), Gaps = 15/156 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + +LYCG G SL L++ R+ VE+ + +V+ A N N V N + + +++ Sbjct: 310 VFDLYCGIGTISLFLSKKAKRIYGVEVVEAAVKDAWENAKVNGVENAEFIVGEAEKVIPE 369 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330 M + R + VDPPR G D+A + +V P I+Y+SCNP +L R Sbjct: 370 MYEK------------GVRADVVVVDPPRKGCDEAVLKTLVDMKPERIVYVSCNPATLAR 417 Query: 331 DLSILSTTH-TIERLALFDQFPYTRHMECGVLLVRK 365 DL L+ + + D FP+T H+EC L+ +K Sbjct: 418 DLKYLAEGGFEVREVQPVDMFPWTYHVECVALIEKK 453 >gi|71734365|ref|YP_275859.1| 23S rRNA 5-methyluridine methyltransferase [Pseudomonas syringae pv. phaseolicola 1448A] gi|91207807|sp|Q48FH7|RUMA_PSE14 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|71554918|gb|AAZ34129.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Pseudomonas syringae pv. phaseolicola 1448A] Length = 451 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 62/202 (30%), Positives = 97/202 (48%), Gaps = 19/202 (9%) Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNF 223 D + RL L +R F Q NA +N M+E L + + +++L+CG GNF Sbjct: 261 DTLGYRLEPWNLQLAWR--PGDFIQVNAAVNTAMIEQALQWLAPAKDERVMDLFCGLGNF 318 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNRL 282 +L LA V+AVE VE A N +N ++NV+ + S+ T A Sbjct: 319 ALPLAGLAREVVAVEGVATMVERAAVNAMSNDLHNVQFFQADLSQPLTHA---------- 368 Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP-HILYISCNPDSLCRD-LSILSTTHT 340 D + F T+ +DPPR G + + + +LY+SCNP +L RD + ++S + Sbjct: 369 ---DWAAEGFSTVLLDPPRDGAFEVVRQIRKTGARRLLYVSCNPATLARDTVELISQGYR 425 Query: 341 IERLALFDQFPYTRHMECGVLL 362 ++R + D FP T H+E L Sbjct: 426 LKRAGILDMFPQTAHVEAMALF 447 >gi|226945755|ref|YP_002800828.1| 23S rRNA 5-methyluridine methyltransferase [Azotobacter vinelandii DJ] gi|226720682|gb|ACO79853.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Azotobacter vinelandii DJ] Length = 454 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 77/239 (32%), Positives = 111/239 (46%), Gaps = 28/239 (11%) Query: 137 RLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGIN- 195 RLR Q+ L GR ++ + + RL G L YR F Q NA +N Sbjct: 234 RLRVFCREHAAQLWLQGR-DEPRADAPEAPLGYRLEPWGLELHYR--PGDFVQVNAVVNE 290 Query: 196 ---VHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIA 252 V LEW+ + +L+L+ G GNF+L LA+ V+AVE P VE R N Sbjct: 291 AMVVQALEWLAPRP---EERVLDLFSGLGNFALPLAQRSREVVAVEGVAPMVERGRENAT 347 Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNR-LKDIDIHSYRFKTIFVDPPRSGLDDAT--V 309 N +NN+ F QA + ++ L + F + DPPR G +A V Sbjct: 348 RNGLNNL--------HFWQA-----DLSKPLAGASWAAAGFAAVLCDPPRDGALEAVRQV 394 Query: 310 GMVQAYPHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVRKPS 367 G + A +LY+SCNP +L RD + L+ + + R + D FP T H+E L R+P+ Sbjct: 395 GSLGAG-RVLYVSCNPATLARDATELAGQGYRLRRAGILDMFPQTAHVEAMALFEREPA 452 >gi|329920434|ref|ZP_08277166.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners SPIN 1401G] gi|328936110|gb|EGG32563.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners SPIN 1401G] Length = 448 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 52/155 (33%), Positives = 76/155 (49%), Gaps = 15/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ Y G G L +A+H +VL VEI + +V+ A+ N N VNN + ++E Sbjct: 304 VIDAYSGIGTIGLSVAKHVKKVLGVEIVRDAVKDAKKNAILNGVNNAEYFEGKAEELMPQ 363 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCR 330 E + IFVDPPR GL D + V P I+YISCNP ++ R Sbjct: 364 WANE------------GLKTDVIFVDPPRKGLTDTFIKAAVATSPKKIVYISCNPATMIR 411 Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364 DL I + + + + D FP T H+E VL+ R Sbjct: 412 DLQIFQAAGYDFDCIDPVDMFPQTPHVESVVLMSR 446 >gi|291537891|emb|CBL11002.1| 23S rRNA m(5)U-1939 methyltransferase [Roseburia intestinalis XB6B4] Length = 475 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 52/151 (34%), Positives = 78/151 (51%), Gaps = 8/151 (5%) Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274 +LYCG G SL LA+ +V VEI ++E A+ N A N +NN + ++E A Sbjct: 325 DLYCGIGTISLFLAQKAGKVYGVEIVPQAIEDAKNNAALNGINNAEFFVGKAEEVLPAF- 383 Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCRDL 332 + + KD D I VDPPR G D + M++ P I+Y+SC+ +L RDL Sbjct: 384 ----YEKKKDTDADMLHPDVIVVDPPRKGCDGVCLETMLKMQPERIVYVSCDSATLARDL 439 Query: 333 SIL-STTHTIERLALFDQFPYTRHMECGVLL 362 +L + + ++ DQF T H+E VL+ Sbjct: 440 KVLCEGGYELCKVRAVDQFGNTTHVESVVLM 470 >gi|325679292|ref|ZP_08158877.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Ruminococcus albus 8] gi|324108889|gb|EGC03120.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Ruminococcus albus 8] Length = 454 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 59/202 (29%), Positives = 96/202 (47%), Gaps = 26/202 (12%) Query: 172 TVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG-----DLLELYCGNGNFSLV 226 T+ G T+ + SF Q +N H E + A + G LL+LYCG G L Sbjct: 270 TMCGNTVSISPL--SFYQ----VNTHQAELLYAMAAELAGLSENMTLLDLYCGTGTIGLS 323 Query: 227 LARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDID 286 +AR +++ VEI +P+++ A N AN + N + + + + + + E Sbjct: 324 MARQVKKLIGVEIIQPAIDNAVVNAKANGIENAEFICGDAGKIAKLLYERGE-------- 375 Query: 287 IHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCRDLSILST-THTIER 343 R I DP R G D ++ M + P I+ ISCN + RD +IL ++ ++ Sbjct: 376 ----RPDVIIADPARRGCDGESLEYMAKMSPDRIVMISCNHTTAARDCAILGELGYSCDK 431 Query: 344 LALFDQFPYTRHMECGVLLVRK 365 + FD FP T H+EC VL+ ++ Sbjct: 432 VMGFDLFPRTTHVECVVLMSKE 453 >gi|330445809|ref|ZP_08309461.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328490000|dbj|GAA03958.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 380 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 48/156 (30%), Positives = 78/156 (50%), Gaps = 18/156 (11%) Query: 211 GDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270 + +L+CG G F+L A ++V +EI ++ +A+ + VNN+ + S FT Sbjct: 240 ASMWDLFCGVGGFALHCAEEVEQVTGIEIEPEAIASAKRSAEMMGVNNLDFAALDSTSFT 299 Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSL 328 Q+ E + V+PPR G+ +A + + HI+Y SCNP +L Sbjct: 300 QSNEAAPEL---------------VLVNPPRRGIGEALCQQLNTFAPKHIIYSSCNPQTL 344 Query: 329 CRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 +DL+ L T + + + FD FP+T H+E VLL R Sbjct: 345 EKDLTRL-TGYKVMKFQWFDMFPHTDHVEAMVLLER 379 >gi|254230529|ref|ZP_04923900.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio sp. Ex25] gi|262393276|ref|YP_003285130.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Vibrio sp. Ex25] gi|151936954|gb|EDN55841.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio sp. Ex25] gi|262336870|gb|ACY50665.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Vibrio sp. Ex25] Length = 439 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 87/373 (23%), Positives = 157/373 (42%), Gaps = 50/373 (13%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQI---FRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66 Y+QQL K LRQ+M F ++++ + + YR RA ++ D + F + Sbjct: 98 YDQQLTYKQQTLRQLMRKFSGNDIELDAPLLGDSLAYRRRARVSLFVD-KKTRQLHFGFR 156 Query: 67 TKERMRIDYFMPGSLL---INALMIEMMATIRL--EPLLRAKLFQIDYLTSQSDQAIVTL 121 K+ +I +L +N L+ E+ + ++ +P +L ++ + + I TL Sbjct: 157 KKQSKQIAQVTDCPVLAPELNVLLPEIYSALKAFKKP---EQLGHVELVLGDNGPCI-TL 212 Query: 122 IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYR 181 + L L HA Y + + N V G Y+ Sbjct: 213 RHLSALTTVETNALTELAKRHHASLYLMPATDQLN---------------LVEGDMPFYQ 257 Query: 182 QI-------ENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDR 233 ++ N+F Q N +N M++ + + D +L+L+CG GNFSL +A+ Sbjct: 258 EVGVKIPFAPNNFIQVNQAVNKKMVKQAVEWLDPQKSDRVLDLFCGVGNFSLPIAKLAKH 317 Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293 V+ VE VE A N + N +NN + + ++ + E RF Sbjct: 318 VVGVEGVAEMVEKATNNASLNQINNAQFYHANLEQDFEGQVWAAE------------RFD 365 Query: 294 TIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDL-SILSTTHTIERLALFDQFP 351 + +DP R+G + + ++Y+SCNP +L RD S++ + + +L + D FP Sbjct: 366 KVLLDPARAGASGIIDQVSELGAQRVVYVSCNPATLARDSQSLMEQGYKLTKLGMLDMFP 425 Query: 352 YTRHMECGVLLVR 364 +T H+E L + Sbjct: 426 HTSHLESMALFEK 438 >gi|293402235|ref|ZP_06646373.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291304342|gb|EFE45593.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 453 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 51/156 (32%), Positives = 78/156 (50%), Gaps = 15/156 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +L+ YCG G + A+ +V+ VE+ K +VE A+ N N + N++ V + +F Q Sbjct: 308 VLDAYCGIGTIGMYAAQFAKQVIGVELNKDAVEDAKNNAKLNQIRNIRFVCDDAGKFMQK 367 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330 M ++E R + +DPPRSG +A + V +LYISCNP + R Sbjct: 368 MAAKKE------------RLDVVILDPPRSGSSEAFIRSVATIRPKKVLYISCNPQTQLR 415 Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVRK 365 DL + + + L D FP T H+E VL+ RK Sbjct: 416 DLQLFQKYGYVGDVLYGVDMFPNTFHVESIVLMTRK 451 >gi|291527662|emb|CBK93248.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Eubacterium rectale M104/1] Length = 418 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 45/155 (29%), Positives = 83/155 (53%), Gaps = 15/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G ++ A++ V+ VE+ + ++ A N N + N++ + +F Sbjct: 276 VIDAYCGTGTIGIIAAKNAGEVIGVELNRDAIRDAVINAKRNDIRNIRFYNDDAGKFMVE 335 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330 M ++ E + + +DPPR+G D+A + +V+ P ++Y+SC P++L R Sbjct: 336 MAQKGE------------KADVVIMDPPRTGSDEAFLSSVVKLSPERVVYVSCGPETLAR 383 Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364 DL L+ + ++R +D FPYT H+E VLL R Sbjct: 384 DLKYLTKHGYAVKRATPYDCFPYTEHIETVVLLCR 418 >gi|88812357|ref|ZP_01127607.1| 23S rRNA methyltransferase/RumA [Nitrococcus mobilis Nb-231] gi|88790364|gb|EAR21481.1| 23S rRNA methyltransferase/RumA [Nitrococcus mobilis Nb-231] Length = 450 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 60/190 (31%), Positives = 90/190 (47%), Gaps = 19/190 (10%) Query: 185 NSFTQPNAGINVHMLEWVLAATK-GIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 FTQ N +N ++E +A Q +L+LYCG GNF+ +AR V+ +E Sbjct: 271 TDFTQVNPAVNHALVERAIALLALQPQDRVLDLYCGLGNFAFCIARQVASVVGLEGDDAL 330 Query: 244 VEAARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302 VE AR N A N + NV R S+ + +R+ + +DPPRS Sbjct: 331 VERARENAARNAITNVVFQRADLSRGIAELAHLQRDG------------VSRVLLDPPRS 378 Query: 303 GLDD--ATVGMVQAYPHILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTRHMEC 358 G + A + ++A I+Y+SC P +L RD L + + + D FP+T H+EC Sbjct: 379 GAAEVLADIAALRAE-RIVYVSCGPSTLARDAGRLVHEYGYRLAAAGVMDMFPHTAHVEC 437 Query: 359 GVLLVRKPSG 368 L VR +G Sbjct: 438 ITLFVRDQAG 447 >gi|292487220|ref|YP_003530092.1| putative SAM-dependent methyltransferase [Erwinia amylovora CFBP1430] gi|292900405|ref|YP_003539774.1| 23S_rRNA (uracil-5-)-methyltransferase [Erwinia amylovora ATCC 49946] gi|291200253|emb|CBJ47381.1| 23s rRNA (uracil-5-)-methyltransferase [Erwinia amylovora ATCC 49946] gi|291552639|emb|CBA19684.1| putative SAM-dependent methyltransferase [Erwinia amylovora CFBP1430] gi|312171321|emb|CBX79580.1| putative SAM-dependent methyltransferase [Erwinia amylovora ATCC BAA-2158] Length = 438 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 49/158 (31%), Positives = 79/158 (50%), Gaps = 20/158 (12%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +L+L+CG GNF+L + + V+ VE V A YN N++NNV + + +E Sbjct: 296 VLDLFCGMGNFTLPIGKFAKNVVGVEGVAALVAKAGYNAELNNLNNVTFWQHNLEE---- 351 Query: 273 MRREREFNRLKDIDIHSYR---FKTIFVDPPRSGLDDATVGMVQAYPH-ILYISCNPDSL 328 D+ + F + +DP R+G + + P ++Y+SCNP +L Sbjct: 352 -----------DVSRQPWAAQGFNKVLLDPARAGAAGVMAHIARLAPQRVVYVSCNPTTL 400 Query: 329 CRDLSI-LSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 RD I L + + +ER+ + D FP+T H+E VL RK Sbjct: 401 ARDSEILLGSGYQLERVTMLDMFPHTGHLESMVLFSRK 438 >gi|331268633|ref|YP_004395125.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum BKT015925] gi|329125183|gb|AEB75128.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum BKT015925] Length = 495 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 47/153 (30%), Positives = 78/153 (50%), Gaps = 15/153 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + + YCG G SL L+++ +V VEI + ++E A+ N N+VNN + + S+E Sbjct: 352 VFDAYCGTGTISLFLSKNAKKVYGVEIVEDAIENAKINAKENNVNNAEFIVGKSEEVIPN 411 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCR 330 + ++ + + VDPPR G D + + + I+Y+SC+P +L R Sbjct: 412 LIKQ------------GIKADVVVVDPPRKGCDKSLLDAIGNMKPDRIVYVSCDPGTLAR 459 Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLL 362 DL+IL + + + D FP T H+E VLL Sbjct: 460 DLAILDELGYETKEVQPVDMFPQTGHVENVVLL 492 >gi|302871091|ref|YP_003839727.1| RNA methyltransferase, TrmA family [Caldicellulosiruptor obsidiansis OB47] gi|302573950|gb|ADL41741.1| RNA methyltransferase, TrmA family [Caldicellulosiruptor obsidiansis OB47] Length = 442 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 61/192 (31%), Positives = 99/192 (51%), Gaps = 16/192 (8%) Query: 177 TLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFSLVLARHFDRVL 235 LI+ SF Q N+ + V+ + I +++ ++Y G G S+ +A +V Sbjct: 260 NLIFEISPKSFFQVNSIQTELLYNQVVKYLRNIDAEVVFDVYSGIGTISMFVAPFCKKVY 319 Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295 ++EI + +VE A+ + N ++N+ EF A E E +L + I + + Sbjct: 320 SIEIVEDAVEDAKKSSKNNGISNI--------EFICA-NAEIEIPKLMEKGIIP---QVV 367 Query: 296 FVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPY 352 +DPPRSG + A + + Q P+I+Y+SCNP +L RD SIL S + I + D FP Sbjct: 368 ILDPPRSGCEKALLESLIKQKIPNIIYVSCNPSTLARDSSILCSNGYEIVEVQPVDMFPQ 427 Query: 353 TRHMECGVLLVR 364 T H+EC VL+ R Sbjct: 428 TFHVECVVLMSR 439 >gi|163789372|ref|ZP_02183811.1| RNA methyltransferase, TrmA family protein [Carnobacterium sp. AT7] gi|159875226|gb|EDP69291.1| RNA methyltransferase, TrmA family protein [Carnobacterium sp. AT7] Length = 458 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 51/155 (32%), Positives = 86/155 (55%), Gaps = 15/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ Y G G +L LA++ V +EI +P+V A+ N N++ NV +++E Sbjct: 315 VIDAYSGIGTIALTLAKNAKHVYGIEIIEPAVVNAKANAELNNIENVTFEAGAAEE---V 371 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD-DATVGMVQAYP-HILYISCNPDSLCR 330 M + E R D+ + VDPPR GL+ + T ++ P ++Y+SCNP +L R Sbjct: 372 MVQWSEEGRTADL---------LVVDPPRKGLEKEFTEAVIAMKPTKMVYVSCNPATLAR 422 Query: 331 DLSILS-TTHTIERLALFDQFPYTRHMECGVLLVR 364 DL++L+ +T++++ D FP T H+E LLVR Sbjct: 423 DLALLTEGGYTVKKVQPVDLFPQTTHVESVALLVR 457 >gi|156932729|ref|YP_001436645.1| 23S rRNA 5-methyluridine methyltransferase [Cronobacter sakazakii ATCC BAA-894] gi|226725380|sp|A7MQZ8|RUMA_ENTS8 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|156530983|gb|ABU75809.1| hypothetical protein ESA_00518 [Cronobacter sakazakii ATCC BAA-894] Length = 432 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 60/187 (32%), Positives = 90/187 (48%), Gaps = 27/187 (14%) Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 F Q N +N M LEW L G + +L+L+CG GNF+L LAR + V+ VE Sbjct: 263 FIQVNDAVNQQMVARALEW-LEIQPGER--VLDLFCGMGNFTLPLARRAESVVGVEGVAA 319 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDP 299 VE YN N + NV + + +E D+ + F + +DP Sbjct: 320 LVEKGDYNAGLNALKNVTFFQHNLEE---------------DVTRQPWAQQGFDKVLLDP 364 Query: 300 PRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHME 357 R+G +V+ P ++Y+SCNP +L RD ++L+ + RLA+ D FP+T H+E Sbjct: 365 ARAGAAGVMQHIVKLKPRRVVYVSCNPATLMRDSETLLAAGYRTVRLAMLDMFPHTGHLE 424 Query: 358 CGVLLVR 364 L R Sbjct: 425 SMALFER 431 >gi|86146353|ref|ZP_01064677.1| 23S rRNA (uracil-5-)-methyltransferase [Vibrio sp. MED222] gi|85835832|gb|EAQ53966.1| 23S rRNA (uracil-5-)-methyltransferase [Vibrio sp. MED222] Length = 439 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 94/376 (25%), Positives = 156/376 (41%), Gaps = 56/376 (14%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPI-----HYRMRAEFHIWHDGDDLYHIMFD 64 Y Q+ K L +M +Q N ++ ++PI YR RA ++ D + F Sbjct: 98 YSSQVEHKSQSLTHLMSKYQTANTEV--AQPIVGDDTGYRRRARISLFVD-KKTQQLQFG 154 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 + K+ +I+ ++L L + L P L++ L LTS +V Sbjct: 155 FRKKQSKQIENITDCAVLDPRLNV-------LLPKLKSLLNTFSSLTSLGHVELV----- 202 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQI- 183 L D +R L + Q + + D+ + + G + Y + Sbjct: 203 --LGDTGPVMVLRHLKPLVEKDEQALMTLAKEEGATLYSMPETDKLVRLVGDSPSYSETG 260 Query: 184 ------ENSFTQPNAGINVHM----LEWVLAATKGIQGD--LLELYCGNGNFSLVLARHF 231 N F Q N +N M +EW+ Q D +L+L+CG GNFSL +A+ Sbjct: 261 VTLPFEPNHFIQVNQKVNQQMVAQAIEWLEP-----QADERVLDLFCGLGNFSLPIAQQS 315 Query: 232 DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291 V+ VE V+ A N A N ++N EF QA E ++L + + Sbjct: 316 AFVVGVEGVDEMVQQATANAALNQLSNT--------EFYQANLEEDLSSQLWAKE----K 363 Query: 292 FKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDL-SILSTTHTIERLALFD 348 F + +DP R+G V + A ++Y+SCNP +L RD S+ + + +L + D Sbjct: 364 FDKVLLDPARAGA-SGIVDQISALGAKRVVYVSCNPATLARDSESLEKQGYQLAKLGMLD 422 Query: 349 QFPYTRHMECGVLLVR 364 FP+T H+E L ++ Sbjct: 423 MFPHTSHLESMALFIK 438 >gi|229171271|ref|ZP_04298861.1| Uncharacterized RNA methyltransferase [Bacillus cereus MM3] gi|228612228|gb|EEK69460.1| Uncharacterized RNA methyltransferase [Bacillus cereus MM3] Length = 459 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 86/382 (22%), Positives = 168/382 (43%), Gaps = 44/382 (11%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQ------IFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63 Y++QL +K D + Q + +L+ + P HYR +++ + + + ++ Sbjct: 96 YKEQLNQKRDIVVQAFEKYMNNSLEEKIRPTLGMENPWHYRNKSQLQVGRKDEKVITGLY 155 Query: 64 DQQTKERMRIDYFM-------PGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTS-QSD 115 Q + + + I + M + ++ ++ ++ +I E + + I T+ Q+ Sbjct: 156 KQNSHQLIDIAHCMIQHKATNEATKVVRRILEKLNVSIYNEKKQKGLVRTIVTRTAVQTG 215 Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175 + VTLI + + ++ + A K +Q + + I + D+ +AG Sbjct: 216 EVQVTLITTKEELPNKDQFIAEVQKQMPAVKSIMQNVNWRKTSVI-----FGDKTFKLAG 270 Query: 176 RTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSL 225 + +I + + +F Q N V + + A + GD +++ YCG G L Sbjct: 271 KEVIQETLGDLSFELSARAFFQLNPEQTVVLYDEAKKAA-ALTGDEKIVDAYCGVGTIGL 329 Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285 LA V +++ ++E AR N + N K ++++ +E Sbjct: 330 WLANDAAEVRGMDVIPEAIEDARKNAKRHGFTNTKYEAGKAEQWLPKWVKE--------- 380 Query: 286 DIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCRDLSILSTTHTIER 343 +R I VDPPR+G DD + +++ P ++Y+SCNP SL RD+ L ++ +E Sbjct: 381 ---GWRPDVIVVDPPRTGCDDKLLETILKVKPKQVVYVSCNPSSLARDVQALMKSYEVEY 437 Query: 344 LALFDQFPYTRHMECGVLLVRK 365 + D FP+T H+E V LVRK Sbjct: 438 VQPVDMFPHTAHVENVVKLVRK 459 >gi|54310181|ref|YP_131201.1| 23S rRNA 5-methyluridine methyltransferase [Photobacterium profundum SS9] gi|46914622|emb|CAG21399.1| putative TrmA family RNA methyltransferase [Photobacterium profundum SS9] Length = 471 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 58/179 (32%), Positives = 81/179 (45%), Gaps = 15/179 (8%) Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 F Q N +N M+E D +L+L+CG GNFSL LA+H V+ VE V Sbjct: 290 FIQVNRDVNKKMVEQATDWLDLQPSDRVLDLFCGLGNFSLPLAKHAKAVVGVEGIDEMVH 349 Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD 305 A N N NN + + E + RE F I +DP R+G Sbjct: 350 RATENAMCNKQNNATFYQANLDEDVTKLAWARE------------PFNKILLDPARAGAA 397 Query: 306 DATVGMVQAYPH-ILYISCNPDSLCRDLSI-LSTTHTIERLALFDQFPYTRHMECGVLL 362 +V+ P ++Y+SCNP +L RD + L + +ERL + D FP T H+E L Sbjct: 398 GVMEHVVKLKPERVVYVSCNPATLARDSQVLLKKGYQLERLGMLDMFPQTGHLESMALF 456 >gi|319775797|ref|YP_004138285.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Haemophilus influenzae F3047] gi|317450388|emb|CBY86604.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Haemophilus influenzae F3047] Length = 438 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 58/183 (31%), Positives = 85/183 (46%), Gaps = 17/183 (9%) Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 F Q N +N M+ L + Q D +L+L+CG GNF+L LA+ + +E V+ Sbjct: 269 FIQVNRALNERMVNTALDWLELNQQDCVLDLFCGMGNFTLPLAKRVKSAVGIEGVFEMVQ 328 Query: 246 AARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 A N N + N+ + + F + FN+ I +DPPRSG Sbjct: 329 KAAQNAERNQIKNITFFQADLGQSFVDQPWSHQSFNK-------------ILLDPPRSGA 375 Query: 305 DDATVGMVQAYPH-ILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLL 362 A + + ILY+SCNP +L RD IL + IE+ A+ D FP+T H+E L Sbjct: 376 AFALNALCELNAEKILYVSCNPATLVRDAEILRDFGYKIEKSAVIDMFPHTGHLESITLF 435 Query: 363 VRK 365 K Sbjct: 436 TTK 438 >gi|21672850|ref|NP_660915.1| RNA methyltransferase [Chlorobium tepidum TLS] gi|50401598|sp|Q8KGF9|Y009_CHLTE RecName: Full=Uncharacterized RNA methyltransferase CT0009 gi|21645898|gb|AAM71257.1| RNA methyltransferase, TrmA family [Chlorobium tepidum TLS] Length = 483 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 74/262 (28%), Positives = 122/262 (46%), Gaps = 24/262 (9%) Query: 101 RAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKI 160 R + ++ +TS D+A++ + RL + A E + L + + RK + + + Sbjct: 232 RHEQLMVNIVTSWYDKALMQALKERL-EAAMPEQQMTLLNNVTTRK---NTVATGEQEYV 287 Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGI--QGDLLELYC 218 YV ERL L +R NSF Q N + + ++A GI + + +LYC Sbjct: 288 ISGDGYVTERLG----DLDFRISANSFFQTNTRQAETLYDQIIA-VGGITPEDTVYDLYC 342 Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278 G G +L LARH + + +E+ + +V+ A N N ++N + K F AM+ E Sbjct: 343 GTGTITLYLARHCKQAIGIEVVESAVKDAEMNAELNGLSNTVFFQADLKNF-HAMQEALE 401 Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGL-DDATVGMVQAYPH-ILYISCNPDSLCRD-LSIL 335 + + I DPPR+G+ A M++ P I+Y+SCNPD+L RD I Sbjct: 402 ---------PYAKPRIIVTDPPRAGMHPKALDTMLKLQPERIVYVSCNPDNLARDGKEIA 452 Query: 336 STTHTIERLALFDQFPYTRHME 357 + + + D FP T H+E Sbjct: 453 ARGYRMTSAQPVDMFPQTNHIE 474 >gi|302390099|ref|YP_003825920.1| 23S rRNA m(5)U-1939 methyltransferase [Thermosediminibacter oceani DSM 16646] gi|302200727|gb|ADL08297.1| 23S rRNA m(5)U-1939 methyltransferase [Thermosediminibacter oceani DSM 16646] Length = 450 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 62/189 (32%), Positives = 92/189 (48%), Gaps = 25/189 (13%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 NSF Q N + V +L + G+ G+ +++ YCG G +L LA V +E+ Sbjct: 278 NSFFQVNP-VQVEVLYKKVMEYAGLTGEETVIDAYCGIGTITLFLAGKARMVYGIEVVPQ 336 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKE-FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301 +V AR N N + NV+ + +++E Q + R R I +DPPR Sbjct: 337 AVMDARNNALLNGIENVEFIEGAAEEVMPQLVER-------------GIRADVIVMDPPR 383 Query: 302 SGLD----DATVGMVQAYPHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHM 356 G D DA V M P ++Y+SCNP +L RDL L + E + D FP+T H+ Sbjct: 384 RGCDEKLLDAAVKM--NPPRMVYVSCNPATLARDLRYLEDRGYRTELVQPVDMFPFTHHV 441 Query: 357 ECGVLLVRK 365 EC V L++K Sbjct: 442 EC-VALIKK 449 >gi|209695937|ref|YP_002263867.1| 23S rRNA 5-methyluridine methyltransferase [Aliivibrio salmonicida LFI1238] gi|226725377|sp|B6EKM3|RUMA_ALISL RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|208009890|emb|CAQ80203.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Aliivibrio salmonicida LFI1238] Length = 438 Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 67/209 (32%), Positives = 99/209 (47%), Gaps = 22/209 (10%) Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGN 220 L+ Y +E V IY ++ F Q NA IN M+ L D +L+L+CG Sbjct: 246 LNHVYGEEPYYVIDEVKIYFTPKD-FIQVNASINDSMVNQALTWLDLNADDCVLDLFCGL 304 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 GNFSL LA+ V+ +E + V+ A+ N N ++NV F QA N Sbjct: 305 GNFSLPLAQKVKTVVGIEGVEEMVKRAQSNAKRNELDNVT--------FYQA-------N 349 Query: 281 RLKDIDIH---SYRFKTIFVDPPRSGLDDATVGMVQAYPH-ILYISCNPDSLCRDLSIL- 335 + ID S +F I +DP R+G + + P ++Y+SCNP +L RD +L Sbjct: 350 LEEPIDQQVWASTKFTKILLDPARAGAAGVMQTVAKLKPETVVYVSCNPATLARDSQLLI 409 Query: 336 STTHTIERLALFDQFPYTRHMECGVLLVR 364 + + RL + D FP+T H+E L R Sbjct: 410 QRGYKLTRLGMLDMFPHTGHLESMALFER 438 >gi|228476539|ref|ZP_04061226.1| 23S rRNA-methyltransferase RumA [Streptococcus salivarius SK126] gi|228251845|gb|EEK10896.1| 23S rRNA-methyltransferase RumA [Streptococcus salivarius SK126] Length = 451 Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 89/386 (23%), Positives = 158/386 (40%), Gaps = 52/386 (13%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHDGDDLYHI 61 +Y++QL K D L Q + F+ N + I +P HYR + +F G + Sbjct: 88 RYDKQLEFKTDLLGQALKKFKPANFESYDIRPTIGMEQPQHYRAKLQFQTRSFGSSVKSG 147 Query: 62 MFDQQTKERMRIDYFMPGSLLINALM-------------------IEMMATIRLEPLLRA 102 +F + + + ID + L +M I + T+ + L + Sbjct: 148 LFAEGSHRLINIDDCLVQDELTQVIMNKVTNLLDKYKFPIYNERKISGIRTVMIRRALGS 207 Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162 Q+ ++TS+S + L+ + L +++ E + +++ +I +T+I Sbjct: 208 NQVQLIFVTSKS-VSFTKLV--KELTESFPEIVTIAVNYNYSKSSEI----YGQETEILW 260 Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAG-INVHMLEWVLAATKGIQGDLLELYCGNG 221 +D + E + L R +F Q N V + V A G L++ YCG G Sbjct: 261 GQDTIQEEVLDYNFALSPR----AFYQLNPQQTEVLYGQAVEALDVGKAEHLIDAYCGVG 316 Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281 L A + ++I ++E AR N + + N +++ +E Sbjct: 317 TIGLAFANKVKSIRGMDIIPEAIEDARKNAKSLGLENAHYEVGKAEDIIPRWYKE----- 371 Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILSTTH 339 YR + VDPPR+GLDD + + AY ++Y+SCN +L RDL L+ + Sbjct: 372 -------GYRADALIVDPPRTGLDDKLLKTILAYTPEKMVYVSCNVSTLARDLVSLAKVY 424 Query: 340 TIERLALFDQFPYTRHMECGVLLVRK 365 + + D FP+T E V L +K Sbjct: 425 DVNYIQSVDMFPHTARTEAVVKLTKK 450 >gi|57642070|ref|YP_184548.1| 23S rRNA (uracil-5-)-methyltransferase [Thermococcus kodakarensis KOD1] gi|57160394|dbj|BAD86324.1| 23S rRNA (uracil-5-)-methyltransferase [Thermococcus kodakarensis KOD1] Length = 417 Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 62/184 (33%), Positives = 94/184 (51%), Gaps = 25/184 (13%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSF Q N+ V+++ V +G + +L+LY G G F + LA+ +V +EI +V Sbjct: 255 NSFFQTNSYQAVNLVRKVAELVEGEK--VLDLYSGVGTFGIYLAKRGFKVEGIEINPFAV 312 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY-RFKTIFVDPPRSG 303 E A+ N N V+ EF +D D++S + T+ VDPPR+G Sbjct: 313 EMAKKNAQINGVDA-------------------EFRVGEDKDVNSLSEYDTVVVDPPRAG 353 Query: 304 LDDATV-GMVQAYPHIL-YISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVL 361 L V +++ P L Y+SCNP +L ++L LS + IE D FP+T H+E VL Sbjct: 354 LHPKLVRKILKDRPETLVYVSCNPKTLSQNLKELSEGYKIEEAVGLDMFPHTPHVEA-VL 412 Query: 362 LVRK 365 +RK Sbjct: 413 KLRK 416 >gi|50401424|sp|Q6LMS7|RUMA_PHOPR RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase Length = 466 Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 58/179 (32%), Positives = 81/179 (45%), Gaps = 15/179 (8%) Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 F Q N +N M+E D +L+L+CG GNFSL LA+H V+ VE V Sbjct: 285 FIQVNRDVNKKMVEQATDWLDLQPSDRVLDLFCGLGNFSLPLAKHAKAVVGVEGIDEMVH 344 Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD 305 A N N NN + + E + RE F I +DP R+G Sbjct: 345 RATENAMCNKQNNATFYQANLDEDVTKLAWARE------------PFNKILLDPARAGAA 392 Query: 306 DATVGMVQAYPH-ILYISCNPDSLCRDLSI-LSTTHTIERLALFDQFPYTRHMECGVLL 362 +V+ P ++Y+SCNP +L RD + L + +ERL + D FP T H+E L Sbjct: 393 GVMEHVVKLKPERVVYVSCNPATLARDSQVLLKKGYQLERLGMLDMFPQTGHLESMALF 451 >gi|225574104|ref|ZP_03782715.1| hypothetical protein RUMHYD_02169 [Blautia hydrogenotrophica DSM 10507] gi|225038655|gb|EEG48901.1| hypothetical protein RUMHYD_02169 [Blautia hydrogenotrophica DSM 10507] Length = 455 Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 106/389 (27%), Positives = 164/389 (42%), Gaps = 56/389 (14%) Query: 10 YEQQLAEKVDRLR---QMMLAFQ-VPNLQIFR-SEPIHYRMRAEFHIWHDGDDLYHIMF- 63 YE+QL K +R++ + + F +P I EP +YR +A+F + + + F Sbjct: 90 YEKQLEYKQNRVKSHLERIGGFSDIPMEPIIGMEEPYYYRNKAQFPVGRNKEGRIVTGFY 149 Query: 64 ---DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV- 119 E R + G+ I +I+ M ++EP +S +V Sbjct: 150 AGRTHSIVETRRCYLGVLGNEEILNRVIDWMEENQVEPY-----------DEKSGSGLVR 198 Query: 120 -TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANK-TKICLD----RDYV---DER 170 LI + W C + D L A++ I+ + N T I + RD V ++ Sbjct: 199 HILIRYGFSSGEWMVCLVINGDKLPAKERLIRTLIEINGMTSITANVNTRRDNVILGEKI 258 Query: 171 LTVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGN 220 L V G+T I QI SF Q N + E L K +QG+ + +LYCG Sbjct: 259 LPVWGQTYITDQIGEVSYEISPLSFYQVNPLQTRKLYEKALEYAK-LQGNEVVWDLYCGI 317 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G SL LA+ +V VEI +V A+ N N + NV+ ++E R+ Sbjct: 318 GTISLFLAQKAKKVYGVEIVPDAVRDAKRNAKINGMKNVEFFVGKAEEILPKKRKS---- 373 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYP-HILYISCNPDSLCRDLSILS-- 336 I VDPPR G D A + + + P ++Y+SC+ +L RDL L Sbjct: 374 -------EGVYADVIVVDPPRKGCDRALLDTILEMGPRRVVYVSCDSATLARDLKYLCGD 426 Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVRK 365 + +E++ DQF T H+E LL RK Sbjct: 427 GGYRLEKVCPVDQFGMTVHVETICLLERK 455 >gi|126667181|ref|ZP_01738155.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Marinobacter sp. ELB17] gi|126628337|gb|EAZ98960.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Marinobacter sp. ELB17] Length = 441 Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 62/187 (33%), Positives = 93/187 (49%), Gaps = 20/187 (10%) Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 FTQ NA IN M++ + G+ +L+L+CG GNF+L LAR +V+ VE VE Sbjct: 270 FTQVNASINQVMVKRAIDWLDVQPGERVLDLFCGLGNFTLPLARRGGQVVGVEGDDAMVE 329 Query: 246 AARYNIAANHVNNVKIVRMS-SKEFT-QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 R N A N ++NV +FT Q+ +E F I +DPPRSG Sbjct: 330 RGRENAALNGLDNVTFFGADLHGDFTGQSWAKE--------------GFDKILIDPPRSG 375 Query: 304 LDDATVGMVQ-AYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVL 361 +D + I+Y+SCNP +L RD ++ + + + + D FP+T H+E + Sbjct: 376 AEDICQYLTAFNASRIVYVSCNPATLARDAGVMVRNGYRLVQAGVMDMFPHTTHVES-IA 434 Query: 362 LVRKPSG 368 L + SG Sbjct: 435 LFERDSG 441 >gi|295099490|emb|CBK88579.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Eubacterium cylindroides T2-87] Length = 485 Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 53/158 (33%), Positives = 77/158 (48%), Gaps = 15/158 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +L+ YCG G L LA V VEI ++E A+ N N++ N K + M S T+ Sbjct: 237 VLDTYCGVGTIGLTLASSCKSVTGVEINPDAIENAKLNAKQNNIKNAKFISMDS---TRY 293 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSG-LDDATVGMVQAYP-HILYISCNPDSLCR 330 M ++F D+ I +DPPR+G D P ILYISC+P ++ R Sbjct: 294 MMEAKKFRNHYDV---------IILDPPRAGTTKDFIEASTSLQPKKILYISCDPKTMMR 344 Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRKPS 367 DL + + ++ L D FP+T H+E VLL K + Sbjct: 345 DLVMFRQKGYMTNKIELVDMFPFTEHIETVVLLSHKKA 382 >gi|188996180|ref|YP_001930431.1| RNA methyltransferase, TrmA family [Sulfurihydrogenibium sp. YO3AOP1] gi|188931247|gb|ACD65877.1| RNA methyltransferase, TrmA family [Sulfurihydrogenibium sp. YO3AOP1] Length = 419 Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 94/383 (24%), Positives = 169/383 (44%), Gaps = 72/383 (18%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFR----SEPIHYRMRAEFHIWHDGDDLYHIMFDQ 65 YE QL K + L+ +L +I + EP YR RA+ DG +L + + Sbjct: 81 YENQLLLKKEILKDQLLRIGKIETEIEKIIPSKEPFRYRNRAQLKF--DGKNLG--FYKK 136 Query: 66 QTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVT----- 120 + + + +D N L+++ L PL K F I Y S+ I + Sbjct: 137 DSNDLVNVD---------NCLLLKEDIEKLLNPL---KKFLIKYAIMPSNIHIFSNTKEE 184 Query: 121 -LIYHRLLDDAWRECAIR----LRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175 LI LD++ I R+ + + I+ IG K K R ++ G Sbjct: 185 KLIRFEFLDESQFSNIIYDMNIFREEIDEK---IKGIGFYAKHK----------RYSLLG 231 Query: 176 RTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATK--GIQGDLLELYCGNGNFSL 225 +++ I + SF Q N ++++ V++ K G + L++ YCG G ++ Sbjct: 232 EDVVFENIGDYKFRVSMDSFFQVNVYQIKNLIDEVVSEIKDKGFK-KLVDFYCGVGTLTI 290 Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285 +++ L +E + +V+ A+ NI N + NVK ++ ++ + ++ ++F L ++ Sbjct: 291 PASKYVKEALGIESNEEAVKDAKANIKHNKLKNVKFLKTQTE---KGLKYAKDF--LPEV 345 Query: 286 DIHSYRFKTIFVDPPRSGLDDATV---GMVQAYPHILYISCNPDSLCRDL-SILSTTHTI 341 + DPPRSGL+ V +Q I+Y+SC+P +L RDL + + Sbjct: 346 ---------VIFDPPRSGLNRKIVNEISQIQTVRKIIYVSCDPSTLSRDLRQFVENGFKL 396 Query: 342 ERLALFDQFPYTRHMECGVLLVR 364 +++ L D FP T H+E +L R Sbjct: 397 KKVKLIDMFPQTYHIESISVLER 419 >gi|212711299|ref|ZP_03319427.1| hypothetical protein PROVALCAL_02371 [Providencia alcalifaciens DSM 30120] gi|212686028|gb|EEB45556.1| hypothetical protein PROVALCAL_02371 [Providencia alcalifaciens DSM 30120] Length = 443 Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 88/359 (24%), Positives = 153/359 (42%), Gaps = 29/359 (8%) Query: 15 AEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRID 74 A+ + L + +P + + + YR RA + + + +M +QT+ +D Sbjct: 105 AQALQHLMKRETGVMLPAISVIGGKEYGYRRRARLGLQYQNKSNHLMMGFRQTQTNTLVD 164 Query: 75 YFMPGSLLINA-LMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL-LDDAWR 132 L +++ ++T + + +KL ++ + D + L+ H +D + R Sbjct: 165 INSCPVLHTELDVLLAPLSTCLNQLSIASKLGHVELI--HGDNGNLILLRHLAPVDLSDR 222 Query: 133 ECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNA 192 + RL + + I L G + + L D VAG L + +F Q N Sbjct: 223 K---RLLEFAQSHGVTIWLAGDNGQLQT-LQADATLPEYQVAGEILQFSPA--NFIQVNG 276 Query: 193 GINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251 IN M+ +A D +L+L+CG GNF+L +AR V+ VE + V A+ N Sbjct: 277 EINQQMVAQAIAWLDLSPEDRVLDLFCGMGNFTLPIARLAKMVVGVEGVENLVTQAKNNA 336 Query: 252 AANHVNNVKIVRMSSKE--FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309 N + N + +E TQ +E F + +DP R+G Sbjct: 337 QRNSIENAAFYNENLEEQIHTQPWAQE--------------GFNKVLLDPARAGAAGVME 382 Query: 310 GMVQAYPH-ILYISCNPDSLCRDLSI-LSTTHTIERLALFDQFPYTRHMECGVLLVRKP 366 +++ P I+Y+SCNP +L RD + L + + +L + D FP T H+E L VR P Sbjct: 383 HLIKLMPEKIVYVSCNPTTLARDSKVLLEGGYQLSQLRMLDMFPQTSHLESMALFVRSP 441 >gi|304439171|ref|ZP_07399089.1| 23S rRNA (uracil-5-)-methyltransferase [Peptoniphilus duerdenii ATCC BAA-1640] gi|304372303|gb|EFM25891.1| 23S rRNA (uracil-5-)-methyltransferase [Peptoniphilus duerdenii ATCC BAA-1640] Length = 532 Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 82/301 (27%), Positives = 134/301 (44%), Gaps = 57/301 (18%) Query: 77 MPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAI 136 + G +LIN L+ I +E ++A + ++D L S+ + I+ I R+ D Sbjct: 195 ISGEMLIN-LVTSSQEEIDIENYVKA-MLELD-LESEI-KGILHTINDRMSDAV------ 244 Query: 137 RLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINV 196 ++D LH I RDYV E+L + ++ SF Q N Sbjct: 245 -VKDELH----------------ILYGRDYVVEKLM----DMEFKIGPFSFFQTNT---- 279 Query: 197 HMLEWVLAATKGI---QGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIA 252 + E + + I +GD LL+L+CG G + +L ++ L VEI + +V++AR N+ Sbjct: 280 YSAEVLYTEAEKILKDKGDYLLDLFCGTGTITSILGKNRKEALGVEIVEEAVDSARENVE 339 Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312 N + N+K + E +E + DI I VDPPR+G+ + + Sbjct: 340 LNGLKNIKFIPGDVYEVV------KELENMYDI---------IVVDPPRAGIGKKAIEKI 384 Query: 313 QAY--PHILYISCNPDSLCRDLSILSTTHTIER-LALFDQFPYTRHMECGVLLVRKPSGW 369 + +ILYISCNP + D+ E+ + DQFP T H+E LL + + Sbjct: 385 TEFGVENILYISCNPVTFVEDIKTFRECGYKEKSVHGVDQFPRTNHVETVALLYKLNTEH 444 Query: 370 H 370 H Sbjct: 445 H 445 >gi|229543018|ref|ZP_04432078.1| RNA methyltransferase, TrmA family [Bacillus coagulans 36D1] gi|229327438|gb|EEN93113.1| RNA methyltransferase, TrmA family [Bacillus coagulans 36D1] Length = 459 Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 63/222 (28%), Positives = 104/222 (46%), Gaps = 29/222 (13%) Query: 155 ANKTKICLDRDYVDERLTVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWV--LA 204 A KT + + DE + ++G+ +I ++E +F Q N V + V A Sbjct: 252 AKKTSVI----FGDETIHLSGKEIIEERLEEFTYELSARAFFQLNPIQTVKLYNEVKKAA 307 Query: 205 ATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRM 264 A G + + + YCG G L LA + +++ ++E A+ N AA+++ N Sbjct: 308 ALTG-KEKIADTYCGVGTIGLWLADGASEIRGMDVIPEAIEDAKKNAAAHNIPNAHYFAG 366 Query: 265 SSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYIS 322 ++ E +R + VDPPRSG D+A + +++ P +Y+S Sbjct: 367 KAEVLLPKWLNE------------GWRPDVVIVDPPRSGCDEALLRTILKVKPKKFVYVS 414 Query: 323 CNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 CNP +L +DL ILS + I + D FP T H+EC VL+ R Sbjct: 415 CNPSTLAKDLHILSKAYNIAYMQPVDMFPQTVHVECVVLMSR 456 >gi|317056338|ref|YP_004104805.1| TrmA family RNA methyltransferase [Ruminococcus albus 7] gi|315448607|gb|ADU22171.1| RNA methyltransferase, TrmA family [Ruminococcus albus 7] Length = 453 Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 51/156 (32%), Positives = 80/156 (51%), Gaps = 15/156 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 LL+LYCG G L +AR +++ VE+ + +++ A+ N AN + N + + + + Q Sbjct: 310 LLDLYCGTGTIGLSMARQVKKLIGVEVIQAAIDNAKANAKANDITNTEFICGDAGKIAQV 369 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCR 330 + E R I DP R G D A++ M + P I+ ISCN + R Sbjct: 370 LYERGE------------RPDVIIADPARKGCDRASLEYMAKMSPDRIVMISCNHTTAAR 417 Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVRK 365 D +IL+ +T +++ FD FP T H+E VLL RK Sbjct: 418 DCAILAELGYTCDKVMGFDLFPRTSHVETVVLLSRK 453 >gi|289628369|ref|ZP_06461323.1| 23S rRNA 5-methyluridine methyltransferase [Pseudomonas syringae pv. aesculi str. NCPPB3681] Length = 347 Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 61/202 (30%), Positives = 96/202 (47%), Gaps = 19/202 (9%) Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNF 223 D + RL L +R F Q NA +N M+E L + + +++L+CG GNF Sbjct: 157 DTLGYRLEPWNLQLAWR--PGDFIQVNAAVNTAMIEQALQWLAPAKDERVMDLFCGLGNF 214 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNRL 282 +L LA V+AVE VE A N +N ++NV+ + S+ T A Sbjct: 215 ALPLAGLAKEVVAVEGVATMVERAAVNAMSNDLHNVQFFQADLSQPLTHA---------- 264 Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP-HILYISCNPDSLCRD-LSILSTTHT 340 D + F + +DPPR G + + + +LY+SCNP +L RD + ++S + Sbjct: 265 ---DWAAEGFSAVLLDPPRDGAFEVVRQIRKTGARRLLYVSCNPATLARDTVELISQGYR 321 Query: 341 IERLALFDQFPYTRHMECGVLL 362 ++R + D FP T H+E L Sbjct: 322 LKRAGILDMFPQTAHVEAMALF 343 >gi|253580204|ref|ZP_04857471.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251848723|gb|EES76686.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 454 Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 65/214 (30%), Positives = 107/214 (50%), Gaps = 25/214 (11%) Query: 154 RANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD- 212 ++++T+I +D+ E L L ++ SF QPN+ + +L ++ G D Sbjct: 257 QSDETRILYGQDFFYETLL----GLRFKISTFSFFQPNS-LAAEVLYSIVREYIGDTKDK 311 Query: 213 -LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271 + +LY G G + + A D V+ VEI + +VEAA+ N A N+++N K + Sbjct: 312 VVFDLYSGTGTIAQLAASVADEVIGVEIVEEAVEAAKQNAALNNLSNCKFIVG------- 364 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLC 329 + LK +D + + I +DPPR G+ + + +Y HI+YISC SL Sbjct: 365 --------DVLKVLDDLTEKPDVIILDPPRDGIHPKALPKILSYGVDHIVYISCKATSLA 416 Query: 330 RDL-SILSTTHTIERLALFDQFPYTRHMECGVLL 362 RDL + L+ + +E+ DQF T H+E VLL Sbjct: 417 RDLPAFLAAGYKLEKACCVDQFCQTVHVETVVLL 450 >gi|307825599|ref|ZP_07655817.1| RNA methyltransferase, TrmA family [Methylobacter tundripaludum SV96] gi|307733485|gb|EFO04344.1| RNA methyltransferase, TrmA family [Methylobacter tundripaludum SV96] Length = 444 Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 74/269 (27%), Positives = 122/269 (45%), Gaps = 23/269 (8%) Query: 100 LRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTK 159 ++ K+ QI+ + DQ V + R+L+ R+R+ H + L + T Sbjct: 191 IKDKIPQIE--VAIGDQQCV--LSFRVLEPPTDADKERMREFAHEHDISLCLQSKGPDTI 246 Query: 160 ICLDRD-YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELY 217 + LD + + + + L ++ FTQ N IN M+ VL + D +L+L+ Sbjct: 247 VPLDGEPELIPTYALPDQGLEFKFKPAMFTQVNYEINKQMINRVLETLALNENDSVLDLF 306 Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS-SKEFTQAMRRE 276 CG GNF+L +A+ V+ VE +P V A+ N N + NV+ SK+ + Sbjct: 307 CGLGNFTLPMAKFAGHVVGVEGDQPLVNHAKENARHNGIENVEFYAADLSKDISDQPWAN 366 Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDLSIL 335 R++N+ I +DP R+G D + P I+Y+SCNP +L RD IL Sbjct: 367 RKYNK-------------IMLDPSRAGASDVLHHFKKWQPEQIVYVSCNPSTLARDAGIL 413 Query: 336 --STTHTIERLALFDQFPYTRHMECGVLL 362 + + + + D FP T H+E L Sbjct: 414 VNELGYKLVKAGVMDMFPQTGHVESMALF 442 >gi|302670355|ref|YP_003830315.1| 23S rRNA methyltransferase [Butyrivibrio proteoclasticus B316] gi|302394828|gb|ADL33733.1| 23S rRNA methyltransferase [Butyrivibrio proteoclasticus B316] Length = 470 Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 51/157 (32%), Positives = 82/157 (52%), Gaps = 18/157 (11%) Query: 211 GDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270 G + +LY G G + +LA ++V+ VEI + +VEAA+ N N+++N EF Sbjct: 323 GIIYDLYSGTGTIAQLLAPVANKVIGVEIVEEAVEAAKENAKLNNLDNC--------EFI 374 Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSL 328 + LK +D + I +DPPR G++ + + Y +++Y+SC P SL Sbjct: 375 AG-------DVLKVLDEIEDKPDMIILDPPRDGINPKALQKIIGYGVKYMIYVSCKPTSL 427 Query: 329 CRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364 RDL +L + + R DQFP+T H+E VLL + Sbjct: 428 ARDLEVLQENGYVMTRAVAVDQFPWTSHVETVVLLTK 464 >gi|34763070|ref|ZP_00144043.1| tRNA (Uracil-5-) -methyltransferase [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27887269|gb|EAA24367.1| tRNA (Uracil-5-) -methyltransferase [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 354 Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 44/156 (28%), Positives = 81/156 (51%), Gaps = 15/156 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ Y G G +++A+ +V A+EI K + E N + N++ + + Sbjct: 211 IVDAYSGTGTIGMIIAKKAKKVYAIEIVKSASEDGEKTAKENGIENIEFINGAV------ 264 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCR 330 E+E +L + ++ R TI DPPR GL+ + + V ++YISCNP + R Sbjct: 265 ---EKEIIKLIN---NNKRIDTIIFDPPRKGLEASIIVTVAKLNLKEVVYISCNPSTFAR 318 Query: 331 DLSILSTT-HTIERLALFDQFPYTRHMECGVLLVRK 365 D+ + + +T+++L D FP T H+EC L+V++ Sbjct: 319 DVKLFAEKGYTLKKLQAVDMFPQTSHIECVGLIVKE 354 >gi|257463545|ref|ZP_05627938.1| tRNA (Uracil-5-) -methyltransferase [Fusobacterium sp. D12] gi|317061100|ref|ZP_07925585.1| tRNA (Uracil-5-)-methyltransferase [Fusobacterium sp. D12] gi|313686776|gb|EFS23611.1| tRNA (Uracil-5-)-methyltransferase [Fusobacterium sp. D12] Length = 453 Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 53/186 (28%), Positives = 88/186 (47%), Gaps = 16/186 (8%) Query: 186 SFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 SF Q N H+ E L+ I+ ++++ Y G G ++L++ +V A+EI + + Sbjct: 280 SFFQINVPQTKHLYEKALSLIPDIENKNVVDAYSGTGTIGMLLSKRAKKVYAIEIVESAS 339 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 N + N+ + + E E +RL + I DPPR G+ Sbjct: 340 RDGEKTAKENRITNIDFICGAV---------EVELDRLLK---EGKQLDAIVFDPPRKGI 387 Query: 305 DDATVGMVQ--AYPHILYISCNPDSLCRDLSILS-TTHTIERLALFDQFPYTRHMECGVL 361 +++ + V P ++YISCNP +L RDL I++ + + + FD FP T H+EC L Sbjct: 388 EESILRKVAEVGIPEMVYISCNPSTLARDLKIMADCGYQVGEIQPFDMFPQTSHVECIAL 447 Query: 362 LVRKPS 367 L R S Sbjct: 448 LQRVKS 453 >gi|238855408|ref|ZP_04645719.1| 23S rRNA-methyltransferase RumA [Lactobacillus jensenii 269-3] gi|260665351|ref|ZP_05866199.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus jensenii SJ-7A-US] gi|282932081|ref|ZP_06337538.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus jensenii 208-1] gi|313473079|ref|ZP_07813563.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus jensenii 1153] gi|238832006|gb|EEQ24332.1| 23S rRNA-methyltransferase RumA [Lactobacillus jensenii 269-3] gi|239528690|gb|EEQ67691.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus jensenii 1153] gi|260560855|gb|EEX26831.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus jensenii SJ-7A-US] gi|281303760|gb|EFA95905.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus jensenii 208-1] Length = 447 Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 53/163 (32%), Positives = 79/163 (48%), Gaps = 17/163 (10%) Query: 208 GIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265 G+ D +++ Y G G L +A+H V VEI KP+V+ A+ N N + N V Sbjct: 297 GLTSDDTVIDAYSGIGTIGLSVAKHVKSVRGVEIVKPAVQDAKENALLNGIENADYVCGK 356 Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD-DATVGMVQAYPH-ILYISC 323 ++E + E + IFVDPPR GL + V+ P I+YISC Sbjct: 357 AEELMPSWVSE------------GMKADVIFVDPPRKGLTLEFIEASVKTNPQKIVYISC 404 Query: 324 NPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVRK 365 NP ++ RDL++ + E + D FP T H+EC +L +K Sbjct: 405 NPATMVRDLTMYQDLGYDFEEITPVDMFPQTPHVECVTVLEKK 447 >gi|195377591|ref|XP_002047572.1| GJ13518 [Drosophila virilis] gi|194154730|gb|EDW69914.1| GJ13518 [Drosophila virilis] Length = 603 Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 53/188 (28%), Positives = 91/188 (48%), Gaps = 20/188 (10%) Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251 AG NV + + A +L++ CG G +L A+H +VL VEI +++ A YN Sbjct: 392 AGANVLYQQAIDLAAPSRDTTMLDICCGTGTIALAFAKHCKQVLGVEIVPDAIKDAEYNA 451 Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRL--KDIDIHSYRFKTIFVDPPRSGLDDATV 309 N + N K ++ +F ++M RE + + K +D+ VDPPR+GL + ++ Sbjct: 452 QENDIKNCKFFAGNADDFIKSMVREALYGQEPGKPVDL------IAVVDPPRAGLHNRSI 505 Query: 310 GMVQAYPHI---LYISCNPDSLCRDLSILSTTHTIE---------RLALFDQFPYTRHME 357 +++ I +Y+SCNP+S R+ L+ + + D FP+T H E Sbjct: 506 AAIRSASAINRLVYVSCNPNSAKRNFIELARPESKQYKGEPFYPKTAVAVDMFPHTTHTE 565 Query: 358 CGVLLVRK 365 +L R+ Sbjct: 566 LVILFERE 573 >gi|255523417|ref|ZP_05390386.1| RNA methyltransferase, TrmA family [Clostridium carboxidivorans P7] gi|255512875|gb|EET89146.1| RNA methyltransferase, TrmA family [Clostridium carboxidivorans P7] Length = 458 Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 51/157 (32%), Positives = 80/157 (50%), Gaps = 17/157 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK-IVRMSSKEFTQ 271 + + YCG G SL L++ +V +EI ++E A+ N N++NN + IV S K + Sbjct: 315 VFDAYCGTGTISLFLSQKSKKVYGIEIIPQAIENAKINAKQNNINNAEFIVGESEKIIPE 374 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLC 329 +++ + + VDPPR G + + + + Q P I+Y+SC+P +L Sbjct: 375 LIKK-------------GIKADVVVVDPPRKGCEKSLLEAIAQMAPERIVYVSCDPGTLA 421 Query: 330 RDLSILST-THTIERLALFDQFPYTRHMECGVLLVRK 365 RDLSIL +T + D FP T H+E V L RK Sbjct: 422 RDLSILDELGYTATEIQPVDMFPQTAHVETVVKLYRK 458 >gi|296184699|ref|ZP_06853110.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium carboxidivorans P7] gi|296050481|gb|EFG89904.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium carboxidivorans P7] Length = 463 Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 51/157 (32%), Positives = 80/157 (50%), Gaps = 17/157 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK-IVRMSSKEFTQ 271 + + YCG G SL L++ +V +EI ++E A+ N N++NN + IV S K + Sbjct: 320 VFDAYCGTGTISLFLSQKSKKVYGIEIIPQAIENAKINAKQNNINNAEFIVGESEKIIPE 379 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLC 329 +++ + + VDPPR G + + + + Q P I+Y+SC+P +L Sbjct: 380 LIKK-------------GIKADVVVVDPPRKGCEKSLLEAIAQMAPERIVYVSCDPGTLA 426 Query: 330 RDLSILST-THTIERLALFDQFPYTRHMECGVLLVRK 365 RDLSIL +T + D FP T H+E V L RK Sbjct: 427 RDLSILDELGYTATEIQPVDMFPQTAHVETVVKLYRK 463 >gi|270160130|ref|ZP_06188786.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Legionella longbeachae D-4968] gi|289165093|ref|YP_003455231.1| 23S rRNA (Uracil-5-)-methyltransferase RumA [Legionella longbeachae NSW150] gi|269988469|gb|EEZ94724.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Legionella longbeachae D-4968] gi|288858266|emb|CBJ12134.1| 23S rRNA (Uracil-5-)-methyltransferase RumA [Legionella longbeachae NSW150] Length = 444 Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 55/175 (31%), Positives = 87/175 (49%), Gaps = 16/175 (9%) Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 FTQ N+ +N M+ L D+ L+L+CG GNFSL +A+ +VL VE +K VE Sbjct: 274 FTQINSMLNQSMVALALQLMDLKSTDIVLDLFCGLGNFSLPMAKFCSKVLGVEGSKTMVE 333 Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD 305 A N NH++NV+ + + + + ++ + +DPPRSG Sbjct: 334 RASMNAKKNHLSNVEFYAANLDDVNEVKKLVQQ------------PCNKVLIDPPRSGAL 381 Query: 306 DATVGMVQAYPH-ILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTRHME 357 + + P I+Y+SCNP +L RD IL + + + + D FP+T H+E Sbjct: 382 EIVKQIDLLNPERIVYVSCNPITLARDTDILVNQKNYILIKAGVMDMFPHTAHVE 436 >gi|300770388|ref|ZP_07080267.1| 23S rRNA (uracil-5-)-methyltransferase [Sphingobacterium spiritivorum ATCC 33861] gi|300762864|gb|EFK59681.1| 23S rRNA (uracil-5-)-methyltransferase [Sphingobacterium spiritivorum ATCC 33861] Length = 469 Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 58/200 (29%), Positives = 93/200 (46%), Gaps = 24/200 (12%) Query: 175 GRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGDLL--ELYCGNGNFS 224 GR IY ++E SF Q N+ + + L + G+ GD L +LY G G + Sbjct: 278 GRDFIYEEMEGLKYKIGPKSFYQTNS-LQAYELYKITREFAGLTGDELVYDLYTGAGTIA 336 Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284 +A+ V+ VE ++E A+ N A N + N K K+ A D Sbjct: 337 NFVAKTAREVIGVEYVPTAIEDAKINSAINQIGNTKFYAGDMKDVLTA-----------D 385 Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVG--MVQAYPHILYISCNPDSLCRDLSILSTTHTIE 342 + + DPPR+G+ V + I+Y+SCN + RDL++L+ +T++ Sbjct: 386 FIAEHGKPDVVITDPPRAGMHGDVVQRLLEMEAEKIVYVSCNAATQARDLALLNEKYTVD 445 Query: 343 RLALFDQFPYTRHMECGVLL 362 R+ D FP+T+H+E VLL Sbjct: 446 RIKPVDMFPHTQHVENVVLL 465 >gi|42779444|ref|NP_976691.1| RNA methyltransferase [Bacillus cereus ATCC 10987] gi|51316698|sp|Q73EJ5|Y363_BACC1 RecName: Full=Uncharacterized RNA methyltransferase BCE_0363 gi|42735360|gb|AAS39299.1| RNA methyltransferase, TrmA family [Bacillus cereus ATCC 10987] Length = 460 Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 50/155 (32%), Positives = 82/155 (52%), Gaps = 15/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G+ SL LA+ +V VEI ++E A+ N A N++ N + ++ Sbjct: 315 VIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDAKRNAALNNMTNAEFGVGEAEVVIPK 374 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330 +E + D T+ VDPPR G D+A + ++ P ++Y+SCNP +L R Sbjct: 375 WYKE---GVIAD---------TMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLAR 422 Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364 DL +L + + + D FP+T H+EC VL+ R Sbjct: 423 DLKVLEEGGYKTQEVQPVDMFPHTTHVECVVLMSR 457 >gi|163783831|ref|ZP_02178812.1| RNA methyltransferase (TrmA-family) protein [Hydrogenivirga sp. 128-5-R1-1] gi|159880902|gb|EDP74425.1| RNA methyltransferase (TrmA-family) protein [Hydrogenivirga sp. 128-5-R1-1] Length = 408 Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 53/201 (26%), Positives = 102/201 (50%), Gaps = 25/201 (12%) Query: 168 DERLTVAGRTLI--------YRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCG 219 ++R+ + G++ YR +SF Q N ++++ V++ + ++YCG Sbjct: 214 NKRVKLEGKSFTFYRAGKFNYRVSIDSFFQVNKYQLENIVDEVISEIPKDSQCIGDIYCG 273 Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279 G F+L ++ +V +E +K +V+ A+YN+ +++ N K F Q + Sbjct: 274 VGLFTLPASKKAKKVFGIEASKSAVKDAQYNVKVHNIGNAK--------FYQKV-----V 320 Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVG---MVQAYPHILYISCNPDSLCRDLSILS 336 + DI I Y T+ DPPR+G+ + +++ I+Y+SCNP + RD+++LS Sbjct: 321 EKSADI-IFGYNPDTLIFDPPRTGIPKNIIQKLLQLKSLKRIIYVSCNPSTASRDINLLS 379 Query: 337 TTHTIERLALFDQFPYTRHME 357 ++++ L D FP T H+E Sbjct: 380 EKFELKKVKLIDMFPQTHHIE 400 >gi|254361966|ref|ZP_04978097.1| tRNA (uracil-5-)-methyltransferase [Mannheimia haemolytica PHL213] gi|261493685|ref|ZP_05990204.1| 23S rRNA 5-methyluridine methyltransferase [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261494352|ref|ZP_05990846.1| 23S rRNA 5-methyluridine methyltransferase [Mannheimia haemolytica serotype A2 str. OVINE] gi|153093513|gb|EDN74493.1| tRNA (uracil-5-)-methyltransferase [Mannheimia haemolytica PHL213] gi|261310001|gb|EEY11210.1| 23S rRNA 5-methyluridine methyltransferase [Mannheimia haemolytica serotype A2 str. OVINE] gi|261310685|gb|EEY11869.1| 23S rRNA 5-methyluridine methyltransferase [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 439 Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 57/185 (30%), Positives = 92/185 (49%), Gaps = 23/185 (12%) Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 F Q NA +N M LEW+ + Q +L+L+CG GNF+L +A V+ VE +P Sbjct: 270 FIQVNATLNEKMVEKALEWLELSN---QDRVLDLFCGMGNFTLPIAERAKSVVGVEGVEP 326 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKE-FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301 V+ AR N + + NV+ + + E F+ + FN+ + +DP R Sbjct: 327 MVQQARENAVTSGLKNVEFYQTNLDEPFSDKPWAKEPFNK-------------VLLDPAR 373 Query: 302 SGLDDATVGMVQAYPH-ILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHMECG 359 +G + P I+Y+SCNP +L RD +L + +E+ A+ D FP+T H+E Sbjct: 374 NGALFCLDHLTSLNPERIVYVSCNPATLVRDAEKLLQLGYRLEKAAMIDMFPHTGHLESI 433 Query: 360 VLLVR 364 L ++ Sbjct: 434 SLFLK 438 >gi|121996838|ref|YP_001001625.1| 23S rRNA 5-methyluridine methyltransferase [Halorhodospira halophila SL1] gi|121588243|gb|ABM60823.1| 23S rRNA m(5)U-1939 methyltransferase [Halorhodospira halophila SL1] Length = 434 Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 58/181 (32%), Positives = 89/181 (49%), Gaps = 22/181 (12%) Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAK 241 + FTQ NA IN+ M+E L + G +L+L+CG GNF+L LAR V +E Sbjct: 262 LPTDFTQVNASINMAMVERALEWLQPQSGRRILDLFCGVGNFTLPLAREGATVTGIEGDP 321 Query: 242 PSVEAARYNIAANHVN-NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300 VE A N AAN ++ + + ++++E T+ + + F + +DPP Sbjct: 322 RLVERAEENAAANGLHADFAVADLATEEGTRRV---------------AGGFDAVLLDPP 366 Query: 301 RSGLDD--ATVGMVQAYPHILYISCNPDSLCRDLSILSTTHT--IERLALFDQFPYTRHM 356 RSG + + V A ++Y SC P +L RD IL H + + D FP+T H+ Sbjct: 367 RSGAQEVLSAVAGTGAR-RVVYCSCGPATLARDAGILVAEHGFRLNAAGIMDMFPHTAHV 425 Query: 357 E 357 E Sbjct: 426 E 426 >gi|148270770|ref|YP_001245230.1| RNA methyltransferase [Thermotoga petrophila RKU-1] gi|147736314|gb|ABQ47654.1| RNA methyltransferase, TrmA family [Thermotoga petrophila RKU-1] Length = 439 Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 61/185 (32%), Positives = 95/185 (51%), Gaps = 21/185 (11%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 +F Q N + +++ V +QG+ LL+LY G G FS+ + RV++VE ++ Sbjct: 268 TAFFQSNYSVTSKLIDHVYREL-ALQGNEVLLDLYAGIGTFSVRASFSAARVISVESSRV 326 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302 +V+A + N N N++ V +F LK+ +S R I +DPPRS Sbjct: 327 AVKAGKANANINSRRNIEYVEQDVLDF------------LKN---YSGRADRIILDPPRS 371 Query: 303 GLDDATVG-MVQAYPH-ILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECG 359 G V +V+ P I+Y+SC P +L RDL +L ++I R+ FD FP T H+E Sbjct: 372 GAGPEVVKEIVRLSPERIVYVSCEPSTLARDLKVLVENGYSILRVKPFDMFPQTYHVETA 431 Query: 360 VLLVR 364 V LV+ Sbjct: 432 VTLVK 436 >gi|110638905|ref|YP_679114.1| RNA methyltransferase [Cytophaga hutchinsonii ATCC 33406] gi|110281586|gb|ABG59772.1| 23S rRNA m(5)U-1939 methyltransferase [Cytophaga hutchinsonii ATCC 33406] Length = 479 Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 57/192 (29%), Positives = 95/192 (49%), Gaps = 16/192 (8%) Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVL 235 LI+R SF Q N+ + L V G+ G+ + +LY G G + +A+ +V+ Sbjct: 286 LIFRVGPKSFYQTNSD-QAYELYKVTRDFAGLTGNEVVYDLYTGTGTIANFVAKKAKQVI 344 Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295 +E ++E A+ N N+++N K+ +EF I H R I Sbjct: 345 GIEYVADAIEDAKVNSKINNIDNTLFYAGDMKDVLN-----KEF-----IAQHQ-RPDVI 393 Query: 296 FVDPPRSGLDDATVG--MVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYT 353 DPPR+G+ + + + P I+Y+SCNP + RDLS+L + + + R+ D FP+T Sbjct: 394 ITDPPRAGMHEDVINTLLFIGAPKIVYVSCNPATQARDLSMLDSDYEVSRIQPVDMFPHT 453 Query: 354 RHMECGVLLVRK 365 H+E VLL ++ Sbjct: 454 AHVENVVLLTKR 465 >gi|23098223|ref|NP_691689.1| RNA methyltransferase [Oceanobacillus iheyensis HTE831] gi|50401583|sp|Q8ES75|Y768_OCEIH RecName: Full=Uncharacterized RNA methyltransferase OB0768 gi|22776448|dbj|BAC12724.1| RNA methyltransferase [Oceanobacillus iheyensis HTE831] Length = 459 Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 51/149 (34%), Positives = 77/149 (51%), Gaps = 15/149 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G+ SL LA+ +V +E+ ++E A+ N N +NNV+ S + + Sbjct: 313 VIDAYCGIGSISLFLAQKAKKVYGIEVVPEAIEDAKMNAEINGMNNVE---FSVGQAEKV 369 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD-DATVGMVQAYPH-ILYISCNPDSLCR 330 M + +E D+ I VDPPR G D D M+ P I+Y+SCNP +L R Sbjct: 370 MPKWKEQGLDPDV---------IVVDPPRKGCDVDFLEAMIAMKPKRIVYVSCNPSTLAR 420 Query: 331 DLSILS-TTHTIERLALFDQFPYTRHMEC 358 DL IL +++ D FP T H+EC Sbjct: 421 DLRILEDGGFETKQVQPVDMFPSTNHVEC 449 >gi|251788451|ref|YP_003003172.1| 23S rRNA 5-methyluridine methyltransferase [Dickeya zeae Ech1591] gi|247537072|gb|ACT05693.1| RNA methyltransferase, TrmA family [Dickeya zeae Ech1591] Length = 444 Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 66/211 (31%), Positives = 96/211 (45%), Gaps = 19/211 (9%) Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCG 219 CL D R +AG +L + F Q N IN M+E LA Q +L+L+CG Sbjct: 247 CLYGDAPSYR--IAGLSLAFS--PRDFIQVNDEINQRMVEQALAWLDPQPQDRVLDLFCG 302 Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279 GNF+L LA RV+ VE V+ R N N + V + +E + Sbjct: 303 MGNFTLPLAERAGRVVGVEGVAALVDKGRENATRNGLTQVTFYHHNLEE---------DV 353 Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDLSIL-ST 337 R S F + +DP R+G +V+ P ++YISCNP +L RD +L + Sbjct: 354 TRQP---WASMGFDKVLLDPARAGAPGVMPQIVKLAPRRVVYISCNPTTLARDSKLLMAA 410 Query: 338 THTIERLALFDQFPYTRHMECGVLLVRKPSG 368 + + RL + D FP+T H+E L + G Sbjct: 411 GYRLARLTMLDMFPHTGHLESMALFLLGSDG 441 >gi|254430408|ref|ZP_05044111.1| 23S rRNA (uracil-5-)-methyltransferase [Cyanobium sp. PCC 7001] gi|197624861|gb|EDY37420.1| 23S rRNA (uracil-5-)-methyltransferase [Cyanobium sp. PCC 7001] Length = 451 Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 70/222 (31%), Positives = 106/222 (47%), Gaps = 36/222 (16%) Query: 158 TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGI-QGDLLEL 216 T++ R ++ ER G L R ++F Q N +L + A +G+ G L++ Sbjct: 253 TELVAGRSWLRERF--CGEEL--RIASDTFFQVNTAQAERVLPSLQHALEGLTPGLLVDA 308 Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276 YCG G FSL LAR RV +E +V A N + N ++ Sbjct: 309 YCGIGTFSLPLARGGWRVHGLERNPEAVRLAALNASINGLS------------------- 349 Query: 277 REFNRLKDIDIHSY------RFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSL 328 E + D+ + R + +F+DPPR GLD A + +QA P +LY+SC+P +L Sbjct: 350 -ELASFEAGDVAALLPPWLPRCQALFLDPPRRGLDGAVMAALQASSPPLLLYLSCDPATL 408 Query: 329 CRDLSIL--STTHTIERLALFDQFPYTRHMECGVLLVR-KPS 367 RDL +L S +T+ R+ D FP T H+E +L R +PS Sbjct: 409 ARDLGLLTRSCGYTVSRVQPLDFFPQTSHIETLAVLRRAEPS 450 >gi|81429157|ref|YP_396158.1| putative RNA methyltransferase [Lactobacillus sakei subsp. sakei 23K] gi|78610800|emb|CAI55851.1| Putative RNA methyltransferase [Lactobacillus sakei subsp. sakei 23K] Length = 454 Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 72/252 (28%), Positives = 115/252 (45%), Gaps = 37/252 (14%) Query: 130 AWRECAIRLRDALHARKYQIQLIGRA-------NKTKICLDRDYVDERLTVAGRTLIYRQ 182 A RE AI ++ AL +Q + A ++TK+ RD++ + L L + Sbjct: 224 AAREIAIEIKKALPEVVSIMQNVNAAQTNVIFGDQTKLIAGRDFIRDELM----GLKFEI 279 Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIA 240 SF Q N + +L + G+ +++ Y G G SL +A+H +V VE+ Sbjct: 280 SAQSFYQVNP-VQTEVLYQKAIEAAELTGNETVIDAYSGIGTISLAVAKHAKQVYGVEVV 338 Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI----DIHSYRFKTIF 296 + +V AR+N N ++NV EFT + +D+ + + Sbjct: 339 ESAVMDARHNAKINAIDNV--------EFT--------LGKAEDVMAQWQTDGLQVDALI 382 Query: 297 VDPPRSGLDDATVGMV-QAYP-HILYISCNPDSLCRDLSILST-THTIERLALFDQFPYT 353 VDPPR GL+ + + V Q P ++Y+SCNP +L RDL +L+ + E D FP T Sbjct: 383 VDPPRKGLEPSFIEAVGQLKPAKMVYVSCNPATLARDLDLLAAQGYQAEGTQPVDMFPQT 442 Query: 354 RHMECGVLLVRK 365 H+E LV K Sbjct: 443 LHVESVTKLVLK 454 >gi|227538859|ref|ZP_03968908.1| TrmA family RNA methyltransferase [Sphingobacterium spiritivorum ATCC 33300] gi|227241368|gb|EEI91383.1| TrmA family RNA methyltransferase [Sphingobacterium spiritivorum ATCC 33300] Length = 469 Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 58/200 (29%), Positives = 93/200 (46%), Gaps = 24/200 (12%) Query: 175 GRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGDLL--ELYCGNGNFS 224 GR IY ++E SF Q N+ + + L + G+ GD L +LY G G + Sbjct: 278 GRDFIYEEMEGLKYKIGPKSFYQTNS-LQAYELYKITREFAGLTGDELVYDLYTGAGTIA 336 Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284 +A+ V+ VE ++E A+ N A N + N K K+ A D Sbjct: 337 NFVAKTAREVIGVEYVPTAIEDAKINSAINQIGNTKFYAGDMKDVLTA-----------D 385 Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVG--MVQAYPHILYISCNPDSLCRDLSILSTTHTIE 342 + + DPPR+G+ V + I+Y+SCN + RDL++L+ +T++ Sbjct: 386 FIAEHGKPDVVITDPPRAGMHGDVVQRLLEMEADKIVYVSCNAATQARDLALLNEKYTVD 445 Query: 343 RLALFDQFPYTRHMECGVLL 362 R+ D FP+T+H+E VLL Sbjct: 446 RIKPVDMFPHTQHVENVVLL 465 >gi|326804241|ref|YP_004322059.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Aerococcus urinae ACS-120-V-Col10a] gi|326650795|gb|AEA00978.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Aerococcus urinae ACS-120-V-Col10a] Length = 459 Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 100/388 (25%), Positives = 167/388 (43%), Gaps = 58/388 (14%) Query: 10 YEQQLAEK----VDRLRQMMLAFQVPNLQ-IFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 Y QLA K V+ L++ L + L+ I EP HYR +A+ I LY + Sbjct: 96 YPAQLAFKRQQVVNSLQKQGLLEKTQVLETIGMEEPWHYRNKAQIPIGQADGKLYTGFYR 155 Query: 65 QQTKERMRIDYF---MPGSLLINALMIEMMATIRLEP-----------LLRAKLFQIDYL 110 + + + + + + +PG I+ + +++A + P LLR + + Y Sbjct: 156 KGSHKLVPMTDYQIQLPG---IDETLQKVLAILNQYPISAYDEDSHQGLLRHLIVRQGYY 212 Query: 111 TSQSDQAIVTLIYHRLLDDAWRECAIRLRDAL--------HARKYQIQLIGRANKTKICL 162 T Q +V +I + L + + A L+D L ++ + +I ++ Sbjct: 213 TGQV--MLVIVINGKKLPEEEKIVAT-LKDELPDLVSIVINSNQKNTNVI-MGQDQRVVY 268 Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGN 220 D ++R+ L +R SF Q N + L A ++GD +++ YCG Sbjct: 269 GEDLYEDRMF----DLTFRISSKSFFQVNTSQAEKLYHQALEAAD-LKGDEVVVDAYCGI 323 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G SL LA+ V VE+ ++ AR N N ++NV ++E Q Sbjct: 324 GTISLCLAQAAKEVYGVEVVPDAINQARENAQLNGLDNVTFQAGKAEEVIQ--------- 374 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDD---ATVGMVQAYPHILYISCNPDSLCRDLS-ILS 336 D + + VDPPR GL + +V VQ P I+Y+SCNP +L RDL+ + Sbjct: 375 ---DWVQAGLKPDVVVVDPPRKGLAEDFIQSVLEVQP-PKIVYVSCNPATLARDLAKFVD 430 Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVR 364 + + ++ D FP T H+E V L R Sbjct: 431 QGYQLGKVQPVDMFPQTHHVEAVVGLTR 458 >gi|148544651|ref|YP_001272021.1| RNA methyltransferase [Lactobacillus reuteri DSM 20016] gi|184154004|ref|YP_001842345.1| RNA methyltransferase [Lactobacillus reuteri JCM 1112] gi|148531685|gb|ABQ83684.1| RNA methyltransferase, TrmA family [Lactobacillus reuteri DSM 20016] gi|183225348|dbj|BAG25865.1| RNA methyltransferase [Lactobacillus reuteri JCM 1112] Length = 459 Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 48/163 (29%), Positives = 80/163 (49%), Gaps = 18/163 (11%) Query: 208 GIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265 G+ G+ +++ YCG G SL +A+H +V VEI ++E A++N N + N K V Sbjct: 305 GLDGNQTVIDAYCGIGTISLAVAKHAKQVYGVEIVPAAIEDAKHNAKRNGIKNAKFV--- 361 Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISC 323 + E +F + + + + VDPPR GL ++ + ++Y+SC Sbjct: 362 ------VGKAEEQFAKWQ---AEGLKPDVVIVDPPRKGLAESLIEATGKMGPKKVIYVSC 412 Query: 324 NPDSLCRDLSILSTT--HTIERLALFDQFPYTRHMECGVLLVR 364 NP +L RD+ + H + + DQFP T H+E +L R Sbjct: 413 NPATLVRDIKRFADQGYHVTKPIQPVDQFPQTTHVESVTVLER 455 >gi|330828386|ref|YP_004391338.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Aeromonas veronii B565] gi|328803522|gb|AEB48721.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Aeromonas veronii B565] Length = 440 Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 57/184 (30%), Positives = 85/184 (46%), Gaps = 15/184 (8%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 F Q N IN M+E L + D +L+L+CG GNF+L LAR V+ VE Sbjct: 269 GDFIQVNGPINQSMVEQALKWLGASKDDKVLDLFCGIGNFTLPLARQAREVVGVEGELAM 328 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 V+ A N N + N + + + M RE F + +DP R G Sbjct: 329 VQRAEENARRNGITNARFYKADLSDDIVGMSWARE------------GFDLVLLDPARPG 376 Query: 304 LDDATVGMVQAYPH-ILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVL 361 + +V+ P ++Y+SCNP +L RD +L + + RL + D FP+T H+E L Sbjct: 377 ALEVMGHVVKLSPKRVVYVSCNPVTLARDSQVLVKGGYRLVRLGMLDMFPHTGHLESMAL 436 Query: 362 LVRK 365 R+ Sbjct: 437 FERE 440 >gi|257884417|ref|ZP_05664070.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium 1,231,501] gi|257820255|gb|EEV47403.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium 1,231,501] Length = 457 Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 58/214 (27%), Positives = 104/214 (48%), Gaps = 20/214 (9%) Query: 155 ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL- 213 +K K+ RDY++++L G+T YR SF Q N ++ + + + + D+ Sbjct: 258 GDKEKVLYGRDYIEDQLL--GKT--YRISAKSFYQVNTQQAEYLYQTAIKFAELDKKDIV 313 Query: 214 LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273 ++ Y G G L LA D+V +E+ ++E A++N N + NV + + Sbjct: 314 IDAYSGIGTIGLSLADKVDKVYGMEVIPEAIEDAQFNALNNKIENV---------YYEVG 364 Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCRD 331 + E+ + ++ I + I VDPPR GLD + ++ P I+YISCNP + RD Sbjct: 365 KAEKVMKKWQEKGI---KPSVIVVDPPRKGLDHHFIESAIEMSPERIVYISCNPATFARD 421 Query: 332 LSILSTT-HTIERLALFDQFPYTRHMECGVLLVR 364 + + + ++++ D FP T H+E V+ Sbjct: 422 AKLFAEAGYAVKKVQPVDLFPQTHHIELVASFVK 455 >gi|255994151|ref|ZP_05427286.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Eubacterium saphenum ATCC 49989] gi|255993819|gb|EEU03908.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Eubacterium saphenum ATCC 49989] Length = 399 Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 74/281 (26%), Positives = 124/281 (44%), Gaps = 36/281 (12%) Query: 100 LRAKLFQIDYLTSQSD------QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIG 153 +R ++ +TS SD ++ V L+ L++ L LH +IQ Sbjct: 141 IRTSEIIVNLVTSSSDLANFNTESFVNLLTSLKLNN-------ELVGILHTVNDKIQDTA 193 Query: 154 RANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL 213 +I RDY ER+ L ++ SF Q N ++ + + + +Q + Sbjct: 194 NGEDIRILYGRDYYMERIM----DLDFKVRMGSFFQTNVQAAENLYRYAINSIDNVQDKV 249 Query: 214 L-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + +L+CG G + LA +V+ V+I+ ++++A N N +NNV R E Sbjct: 250 IFDLFCGTGTITQSLAGAAKKVIGVDISDDAIKSAIENTKLNKINNVSFYRGDVFEVI-- 307 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD-DATVGMVQAYP-HILYISCNPDSLCR 330 R N D+ I +DPPR+G++ A +V+ P I+YISCNP +L Sbjct: 308 ----RNINEKPDV---------IVLDPPRAGVNAKALEKIVEFSPREIVYISCNPKTLID 354 Query: 331 DLSILS-TTHTIERLALFDQFPYTRHMECGVLLVRKPSGWH 370 +L + I+ L FD F +T H+E LL + + H Sbjct: 355 NLYFFEYNRYNIKSLKAFDNFFFTSHVEAVALLSKLNTDKH 395 >gi|152977878|ref|YP_001343507.1| 23S rRNA 5-methyluridine methyltransferase [Actinobacillus succinogenes 130Z] gi|150839601|gb|ABR73572.1| RNA methyltransferase, TrmA family [Actinobacillus succinogenes 130Z] Length = 439 Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 57/179 (31%), Positives = 86/179 (48%), Gaps = 25/179 (13%) Query: 187 FTQPNAGINVHML----EWV-LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241 F Q NA +N M+ +W+ L T + L+L+CG GNF+L ++R + +E Sbjct: 271 FIQVNADLNRKMVATASDWLALKPTDRV----LDLFCGMGNFTLPISRLVKSAVGIEGVS 326 Query: 242 PSVEAARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300 V A N NH NV+ + F R F++ I +DPP Sbjct: 327 AMVTKATKNAEQNHCENVEFYQTDLDSSFVDKPWANRPFDK-------------ILLDPP 373 Query: 301 RSGLDDATVGMVQAYPH-ILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHME 357 RSG A ++ P ILY+SCNP +L RD ++L + + R+A+ D FP+T H+E Sbjct: 374 RSGAAFALSALIGLQPEKILYVSCNPATLIRDAENLLRAGYRLRRVAMIDMFPHTGHLE 432 >gi|227495419|ref|ZP_03925735.1| 23S rRNA methyluridine methyltransferase [Actinomyces coleocanis DSM 15436] gi|226830966|gb|EEH63349.1| 23S rRNA methyluridine methyltransferase [Actinomyces coleocanis DSM 15436] Length = 396 Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 65/217 (29%), Positives = 101/217 (46%), Gaps = 27/217 (12%) Query: 159 KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLE----WVLAATKGIQGD-L 213 +I L DY+ +L L+ R SF Q N I M + W +A ++ D Sbjct: 193 EISLYGDYLPFQLGRVKLQLLPR----SFFQTNTFIAHAMYQQAQRWAIA----LKPDRA 244 Query: 214 LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273 ++L+CG G F+L LA V VE++ P++ AA+ A+ + NV + F+ Sbjct: 245 VDLFCGVGGFALFLAATCRAVTGVELSAPAIAAAKRGAVASGLENVDFYAADATSFS--- 301 Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRD 331 + + + R I V+PPR G+ + I+Y SCNP SL +D Sbjct: 302 --------ISEGGLQLTRRDMIVVNPPRRGIGVELANWINESQARVIIYSSCNPVSLAKD 353 Query: 332 LSILSTTHTIERLALFDQFPYTRHMECGVLLVRKPSG 368 + +L ++ R +FD FP T H E VLLV++P G Sbjct: 354 MELLG-SYKATRARVFDMFPGTDHAEVMVLLVKEPQG 389 >gi|77919151|ref|YP_356966.1| RNA methyltransferase [Pelobacter carbinolicus DSM 2380] gi|77545234|gb|ABA88796.1| 23S rRNA m(5)U-1939 methyltransferase [Pelobacter carbinolicus DSM 2380] Length = 434 Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 65/185 (35%), Positives = 84/185 (45%), Gaps = 20/185 (10%) Query: 185 NSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 F Q N N M+ V+ G +L+L+CG GNFSL +AR V+ VE S Sbjct: 264 GGFAQINLPQNRAMVREVVGTLVSNPPGRVLDLFCGMGNFSLPVARLAQEVVGVEAYLQS 323 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 +E AR N N + NV +A E+ ID+ + +DPPRSG Sbjct: 324 IEMARLNARLNEIENVSFFA------REAYGAATEYGADGAIDL-------VIMDPPRSG 370 Query: 304 LDDATVGMVQAYP-HILYISCNPDSLCRDLSILSTTHTIERLAL---FDQFPYTRHMECG 359 D +V P ILY+SC+P +L RDL L H RL FD FP+T H E Sbjct: 371 AYDVARELVTVRPARILYVSCDPPTLVRDL--LPLLHNGYRLVWSRPFDLFPHTHHTESI 428 Query: 360 VLLVR 364 L R Sbjct: 429 TFLER 433 >gi|153956154|ref|YP_001396919.1| tRNA (uracil-5-)-methyltransferase-related protein [Clostridium kluyveri DSM 555] gi|146349012|gb|EDK35548.1| TRNA (uracil-5-)-methyltransferase-related protein [Clostridium kluyveri DSM 555] Length = 469 Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 51/163 (31%), Positives = 85/163 (52%), Gaps = 17/163 (10%) Query: 208 GIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265 G+ G+ + + YCG G SL L++ +V VEI ++E A N A N ++NV+ + Sbjct: 317 GLTGNEVIFDAYCGTGTISLFLSQKAKKVYGVEIIPQAIENANMNAAENGIDNVEFITGK 376 Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISC 323 S++ + ++ R + VDPPR G ++A + + P I+Y+SC Sbjct: 377 SEKVIPELIKK------------GVRADVVVVDPPRKGCEEALLHSIADMRPRTIVYVSC 424 Query: 324 NPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVRK 365 +P +L RDL+IL + +E++ D FP T H+E V L R+ Sbjct: 425 DPATLARDLAILRDFGYRVEKVQPVDMFPQTSHVETIVSLQRE 467 >gi|321314402|ref|YP_004206689.1| putative RNA methyltransferase [Bacillus subtilis BSn5] gi|320020676|gb|ADV95662.1| putative RNA methyltransferase [Bacillus subtilis BSn5] Length = 461 Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 50/159 (31%), Positives = 80/159 (50%), Gaps = 17/159 (10%) Query: 209 IQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266 +QG+ +++ YCG G SL LA+ +V VEI ++E A+ N N + N + + Sbjct: 309 LQGEETVIDAYCGIGTISLFLAKQAKKVYGVEIVPEAIEDAKRNAELNGITNAEFAVGEA 368 Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCN 324 + E T+ VDPPR G D+A + +++ P ++Y+SCN Sbjct: 369 ETVIPKWYEE------------GIAADTLVVDPPRKGCDEALLRTILEMKPKRVVYVSCN 416 Query: 325 PDSLCRDLSILSTTHTIER-LALFDQFPYTRHMECGVLL 362 P +L RDL +L + R + D FP+T H+EC V+L Sbjct: 417 PGTLARDLRVLEDGGYVTREVQPVDMFPHTNHVECVVVL 455 >gi|227551663|ref|ZP_03981712.1| TrmA family tRNA (uracil-5-)-methyltransferase [Enterococcus faecium TX1330] gi|257887201|ref|ZP_05666854.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium 1,141,733] gi|257895737|ref|ZP_05675390.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium Com12] gi|293377654|ref|ZP_06623843.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium PC4.1] gi|227179226|gb|EEI60198.1| TrmA family tRNA (uracil-5-)-methyltransferase [Enterococcus faecium TX1330] gi|257823255|gb|EEV50187.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium 1,141,733] gi|257832302|gb|EEV58723.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium Com12] gi|292643654|gb|EFF61775.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium PC4.1] Length = 457 Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 58/214 (27%), Positives = 104/214 (48%), Gaps = 20/214 (9%) Query: 155 ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL- 213 +K K+ RDY++++L G+T YR SF Q N ++ + + + + D+ Sbjct: 258 GDKEKVLYGRDYIEDQLL--GKT--YRISAKSFYQVNTQQAEYLYQTAIKFAELDKKDIV 313 Query: 214 LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273 ++ Y G G L LA D+V +E+ ++E A++N N + NV + + Sbjct: 314 IDAYSGIGTIGLSLADKVDKVYGMEVIPEAIEDAQFNALNNKIENV---------YYEVG 364 Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCRD 331 + E+ + ++ I + I VDPPR GLD + ++ P I+YISCNP + RD Sbjct: 365 KAEKVMKKWQEKGI---KPSVIVVDPPRKGLDHHFIESAIEMSPERIVYISCNPATFARD 421 Query: 332 LSILSTT-HTIERLALFDQFPYTRHMECGVLLVR 364 + + + ++++ D FP T H+E V+ Sbjct: 422 AKLFAEAGYAVKKVQPVDLFPQTHHIELVASFVK 455 >gi|16077741|ref|NP_388555.1| RNA methyltransferase [Bacillus subtilis subsp. subtilis str. 168] gi|221308510|ref|ZP_03590357.1| hypothetical protein Bsubs1_03798 [Bacillus subtilis subsp. subtilis str. 168] gi|221312833|ref|ZP_03594638.1| hypothetical protein BsubsN3_03754 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221317757|ref|ZP_03599051.1| hypothetical protein BsubsJ_03708 [Bacillus subtilis subsp. subtilis str. JH642] gi|221322036|ref|ZP_03603330.1| hypothetical protein BsubsS_03794 [Bacillus subtilis subsp. subtilis str. SMY] gi|50401309|sp|O31503|YEFA_BACSU RecName: Full=Uncharacterized RNA methyltransferase yefA gi|2632987|emb|CAB12493.1| putative RNA methyltransferase [Bacillus subtilis subsp. subtilis str. 168] Length = 459 Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 51/159 (32%), Positives = 79/159 (49%), Gaps = 17/159 (10%) Query: 209 IQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266 +QG+ +++ YCG G SL LA+ +V VEI ++E A+ N N N + + Sbjct: 309 LQGEETVIDAYCGIGTISLFLAKQAKKVYGVEIVPEAIEDAKRNAELNGNTNAEFAVGEA 368 Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCN 324 + E T+ VDPPR G D+A + +V+ P ++Y+SCN Sbjct: 369 ETVIPKWYEE------------GITADTLVVDPPRKGCDEALLRTIVEMKPKRVVYVSCN 416 Query: 325 PDSLCRDLSILSTTHTIER-LALFDQFPYTRHMECGVLL 362 P +L RDL +L + R + D FP+T H+EC VL+ Sbjct: 417 PGTLARDLRVLEDGGYVTREVQPVDMFPHTNHVECCVLI 455 >gi|282882158|ref|ZP_06290797.1| RNA methyltransferase [Peptoniphilus lacrimalis 315-B] gi|281297923|gb|EFA90380.1| RNA methyltransferase [Peptoniphilus lacrimalis 315-B] Length = 441 Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 64/210 (30%), Positives = 101/210 (48%), Gaps = 24/210 (11%) Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYC 218 I RDYV E L L ++ SF Q N ++ + +QG +L+LYC Sbjct: 250 ILYGRDYVIEELL----GLKFKIGTFSFFQTNTYSAAYLYQLAFDMIDNLQGKKVLDLYC 305 Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278 G G S V A+ + VL VEI + +V AAR N N+++NV + + Sbjct: 306 GTGTISQVFAKKAESVLGVEIVEEAVNAARENAQYNNISNVDFIAGDVAKV--------- 356 Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDD--ATVGMVQAYP-HILYISCNPDSLCRDLS-I 334 + D+DI + I +DPPR G+++ A ++ P LYISCNP S +D+ Sbjct: 357 ---VNDLDIKA---DIIILDPPRVGINNPKALDKIIDFSPEEFLYISCNPISYVKDVKRF 410 Query: 335 LSTTHTIERLALFDQFPYTRHMECGVLLVR 364 + + ++++ DQFP T ++E LL + Sbjct: 411 IERGYKLKKIVGLDQFPRTVNLELISLLEK 440 >gi|240948983|ref|ZP_04753337.1| 23S rRNA 5-methyluridine methyltransferase [Actinobacillus minor NM305] gi|240296570|gb|EER47188.1| 23S rRNA 5-methyluridine methyltransferase [Actinobacillus minor NM305] Length = 440 Score = 83.6 bits (205), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 56/181 (30%), Positives = 89/181 (49%), Gaps = 15/181 (8%) Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 F Q NA N M+ L + D +L+L+CG GNF+L LA+ V+ VE + V Sbjct: 270 FIQVNAEQNQKMVAQALNWLALEKSDRVLDLFCGMGNFTLPLAQQAGYVVGVEGVEEMVA 329 Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD 305 AR N N ++NV + + E R D + F + +DP R G Sbjct: 330 TARQNAVENQLDNVAFYQTNLDE------------RFVDQPWATEAFNKVLLDPARHGAY 377 Query: 306 DATVGMVQAYPH-ILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHMECGVLLV 363 A + + P I+Y+SCNP +L RD ++ + +++ ++A+ D FP+T H+E L V Sbjct: 378 FALDHLCELNPERIVYVSCNPATLVRDAEKLIKSGYSLAKVAVIDMFPHTGHLESISLFV 437 Query: 364 R 364 + Sbjct: 438 K 438 >gi|323703882|ref|ZP_08115516.1| RNA methyltransferase, TrmA family [Desulfotomaculum nigrificans DSM 574] gi|323531170|gb|EGB21075.1| RNA methyltransferase, TrmA family [Desulfotomaculum nigrificans DSM 574] Length = 462 Score = 83.6 bits (205), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 86/352 (24%), Positives = 147/352 (41%), Gaps = 42/352 (11%) Query: 40 PIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIR---- 95 P HYR + H + F + T + + D LL+N +IE++A + Sbjct: 128 PWHYRNKIHLHATQSAGRIKLGFFAEGTHQ-LTADISEQSCLLVNQEIIEVVAAVEELLN 186 Query: 96 -----------LEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLD-DAWRECAIRLRDALH 143 + LLR + + Y T + +VT + L + + RE R + Sbjct: 187 SFKIKSYDWESKQGLLRHVMIRRGYATGEIMVVLVTTAENWLTEQELAREIVNRHPRVVS 246 Query: 144 ARKYQIQLIGR---ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLE 200 + GR + ++ +D + +RL L ++ SF Q N + Sbjct: 247 VIRNINTNPGRLILGPQNQVLAGKDSITDRLC----GLKFKISAASFYQVNPRQTEVLYN 302 Query: 201 WVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN 258 L ++GD +++ YCG G + +LARH V+ +EI +V AR N N++ N Sbjct: 303 KALEFAN-LKGDETVVDAYCGIGTIASLLARHAGSVIGLEIVPDAVTDARENARLNNLFN 361 Query: 259 VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYP 316 ++ S + L ++ R + +DPPR G + + + P Sbjct: 362 IEFFNGSVERL------------LPEMVARGLRPDLVVLDPPRKGCEKEVLEAILKTQVP 409 Query: 317 HILYISCNPDSLCRDLSILS-TTHTIERLALFDQFPYTRHMECGVLLVRKPS 367 ++Y+SC+P +L RDL IL+ + + D FP+T H+EC V L RK S Sbjct: 410 RVVYVSCDPATLARDLGILAGAGYEPAEVQPVDMFPWTCHVECVVWLKRKHS 461 >gi|298487963|ref|ZP_07006002.1| RNA methyltransferase, TrmA family [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298157514|gb|EFH98595.1| RNA methyltransferase, TrmA family [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 451 Score = 83.6 bits (205), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 61/202 (30%), Positives = 96/202 (47%), Gaps = 19/202 (9%) Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNF 223 D + RL L +R F Q NA +N M+E L + + +++L+CG GNF Sbjct: 261 DTLGYRLEPWNLQLAWR--PGDFIQVNAAVNTAMIEQALQWLAPAKDERVMDLFCGLGNF 318 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNRL 282 +L LA V+AVE VE A N +N ++NV+ + S+ T A Sbjct: 319 ALPLAGLAKEVVAVEGVATMVERAAVNAMSNDLHNVQFFQADLSQPLTHA---------- 368 Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP-HILYISCNPDSLCRD-LSILSTTHT 340 D + F + +DPPR G + + + +LY+SCNP +L RD + ++S + Sbjct: 369 ---DWAAEGFSAVLLDPPRDGAFEVVRQIRKTGARRLLYVSCNPATLARDTVELISQGYR 425 Query: 341 IERLALFDQFPYTRHMECGVLL 362 ++R + D FP T H+E L Sbjct: 426 LKRAGILDMFPQTAHVEAMALF 447 >gi|307545603|ref|YP_003898082.1| 23S rRNA 5-methyluridine methyltransferase [Halomonas elongata DSM 2581] gi|307217627|emb|CBV42897.1| 23S rRNA 5-methyluridine methyltransferase [Halomonas elongata DSM 2581] Length = 483 Score = 83.6 bits (205), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 65/201 (32%), Positives = 96/201 (47%), Gaps = 20/201 (9%) Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHM----LEWVLAATKGIQGD--LLELYCGNGNF 223 RLT RTL+ + F Q N +N M L W+ A + +L+L+ G GNF Sbjct: 279 RLTAGRRTLVLGLEPSDFLQANEAVNQRMVDTALSWLAPALSPVAPGTRVLDLFAGIGNF 338 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 SL LA V AVE + VE N A N V R + +A RR Sbjct: 339 SLPLATQGAEVSAVEGSTAMVERLAGNAARNQV--AVTARQADLNDAEACRRL------- 389 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLS-ILSTTHTI 341 + + + + +DPPRSG + +V+ P +LYISC+P +L RD + ++S + + Sbjct: 390 ---LATTAPEVLVLDPPRSGAEALCRQLVEHPVPWVLYISCDPATLARDAAWLVSAGYVV 446 Query: 342 ERLALFDQFPYTRHMECGVLL 362 R A+ D F +T H+E +LL Sbjct: 447 RRSAVADMFAHTSHLESMLLL 467 >gi|187776694|ref|ZP_02993167.1| hypothetical protein CLOSPO_00209 [Clostridium sporogenes ATCC 15579] gi|187775353|gb|EDU39155.1| hypothetical protein CLOSPO_00209 [Clostridium sporogenes ATCC 15579] Length = 459 Score = 83.6 bits (205), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 48/155 (30%), Positives = 77/155 (49%), Gaps = 15/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + + YCG G SL L++ +V VEI K +++ A+ N N ++N + S+E Sbjct: 316 VFDAYCGTGTISLFLSQKAKKVYGVEIIKEAIDNAKDNAKENKIDNAEFFVGKSEEV--- 372 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330 + D+ + I VDPPR G + + + P I+Y+SC+P +L R Sbjct: 373 ---------IPDLINKGIKADVIVVDPPRKGCEKTLLEAIADIKPKRIVYVSCDPGTLAR 423 Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364 DL IL+ + + + D FP T H+EC VL+ R Sbjct: 424 DLGILNGLGYETKEVQPVDMFPQTSHVECVVLITR 458 >gi|271501842|ref|YP_003334868.1| TrmA family RNA methyltransferase [Dickeya dadantii Ech586] gi|270345397|gb|ACZ78162.1| RNA methyltransferase, TrmA family [Dickeya dadantii Ech586] Length = 444 Score = 83.6 bits (205), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 64/211 (30%), Positives = 97/211 (45%), Gaps = 19/211 (9%) Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATK-GIQGDLLELYCG 219 CL D R +AG +L + F Q N IN M+ L + Q +L+L+CG Sbjct: 247 CLHGDMPSYR--IAGLSLAFS--PRDFIQVNDDINQRMVAQALTWLELQPQDRVLDLFCG 302 Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279 GNF+L +A+H RV+ VE VE + N N + V + +E + Sbjct: 303 MGNFTLPMAQHAGRVVGVEGVAALVEKGQENAQRNGLTQVTFYHHNLEE---------DV 353 Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDLSIL-ST 337 R S F + +DP R+G +V+ P ++YISCNP +L RD +L + Sbjct: 354 TRQP---WASMGFDKVLLDPARAGAPGVMPQIVKLAPRRVVYISCNPTTLARDSKVLMAA 410 Query: 338 THTIERLALFDQFPYTRHMECGVLLVRKPSG 368 + + RL + D FP+T H+E L + G Sbjct: 411 GYRLARLTMLDMFPHTGHLESMALFLLGSEG 441 >gi|331013485|gb|EGH93541.1| 23S rRNA m(5)U1939 methyltransferase [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 451 Score = 83.6 bits (205), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 61/202 (30%), Positives = 96/202 (47%), Gaps = 19/202 (9%) Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNF 223 D + RL L +R F Q NA +N M+E L + + +++L+CG GNF Sbjct: 261 DTLGYRLEPWNLQLAWR--PGDFIQVNAAVNTAMIEQALQWLAPAKDERVMDLFCGLGNF 318 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNRL 282 +L LA V+AVE VE A N +N ++NV+ + S+ T A Sbjct: 319 ALPLAGLAKEVVAVEGVATMVERAAVNAISNDLHNVQFFQADLSQPLTHA---------- 368 Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP-HILYISCNPDSLCRD-LSILSTTHT 340 D + F + +DPPR G + + + +LY+SCNP +L RD + ++S + Sbjct: 369 ---DWAAEGFSAVLLDPPRDGAFEVVRQIRKTGARRLLYVSCNPATLARDTVELISQGYR 425 Query: 341 IERLALFDQFPYTRHMECGVLL 362 ++R + D FP T H+E L Sbjct: 426 LKRAGILDMFPQTAHVEAMALF 447 >gi|189424908|ref|YP_001952085.1| RNA methyltransferase, TrmA family [Geobacter lovleyi SZ] gi|189421167|gb|ACD95565.1| RNA methyltransferase, TrmA family [Geobacter lovleyi SZ] Length = 437 Score = 83.6 bits (205), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 86/332 (25%), Positives = 141/332 (42%), Gaps = 27/332 (8%) Query: 43 YRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMP-GSLLINALMIEMMATIRLEPLLR 101 YR RA+F + L F + ++ + + P + IN M+++ I+ P Sbjct: 122 YRARAQFKLHATPAGLAVGFFRRGSRYVIDLPQGCPICTEPINTAMLKLRQVIQAVP--- 178 Query: 102 AKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRL--RDALHARKYQIQLIGRANKTK 159 L +I L+ + + V + H + D R + L RD L +Q IGR + Sbjct: 179 -DLHRIPQLSLEEGASGVVAVVHYIGSDQQRLKQLLLQHRDQLGVSGLFLQ-IGRKEALQ 236 Query: 160 ICLDRD---YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLE 215 Y R ++ + F+Q N N M++ V A +L+ Sbjct: 237 PVFGSGHLTYPVPRCDLSADAMSLGYEIGGFSQVNRLQNQKMVKLVCGYAQPAASQRMLD 296 Query: 216 LYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275 LYCGNGN SL L+ +L +E PS+ +A V+N + +R+++ F R Sbjct: 297 LYCGNGNLSLPLSGAVQELLGIEGFAPSIASA--------VDNARQLRVNNSTF----RC 344 Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSI 334 L+ + F + +DPPR+G D + Q I+Y+SC+P +L RDL+ Sbjct: 345 NDASKELRHLIAQHAVFDLVLLDPPRAGAADVARQLAQLGAQRIVYVSCDPATLARDLAA 404 Query: 335 L--STTHTIERLALFDQFPYTRHMECGVLLVR 364 L + + + D FP T H+E LL R Sbjct: 405 LCGAAGYRLIEATPLDMFPQTGHLETVALLTR 436 >gi|219130362|ref|XP_002185336.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217403251|gb|EEC43205.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 378 Score = 83.6 bits (205), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 63/218 (28%), Positives = 104/218 (47%), Gaps = 25/218 (11%) Query: 163 DRDYVD----ERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKG------IQGD 212 D DYV+ + LT R L + + +F Q N + M+E VLA G Sbjct: 170 DDDYVETNHQQPLTTTVRGLNFTYLAGNFFQNNYYVLPLMVEHVLARAVGDDHEQPTMTH 229 Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L + YCG+G F++ A F V+ +EI +V A+ N N +++ + + SS+ Sbjct: 230 LADCYCGSGLFAIAAAPSFATVVGIEINDKAVREAQANAERNGIDHCQFLAASSENIFAE 289 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCR 330 + R+F R + + +DPPR G + + + I+Y+SC+P + R Sbjct: 290 I---RDFPRDTTV---------VVLDPPRKGCSVEFLSQLYDFAPRRIVYMSCDPTTQAR 337 Query: 331 DL-SILSTTHTIERLALFDQFPYTRHMECGVLLVRKPS 367 D I++ + I + FD FP TRH+EC ++L R P+ Sbjct: 338 DAQGIVAAGYRITSVQPFDLFPQTRHIECLMVLERSPA 375 >gi|330866046|gb|EGH00755.1| 23S rRNA m(5)U1939 methyltransferase [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 451 Score = 83.6 bits (205), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 61/202 (30%), Positives = 96/202 (47%), Gaps = 19/202 (9%) Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNF 223 D + RL L +R F Q NA +N M+E L + + +++L+CG GNF Sbjct: 261 DTLGYRLEPWNLQLAWR--PGDFIQVNAAVNTAMIEQALQWLAPAKDERVMDLFCGLGNF 318 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNRL 282 +L LA V+AVE VE A N +N ++NV+ + S+ T A Sbjct: 319 ALPLAGLAKEVVAVEGVATMVERAAVNAMSNDLHNVQFFQADLSQPLTHA---------- 368 Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP-HILYISCNPDSLCRD-LSILSTTHT 340 D + F + +DPPR G + + + +LY+SCNP +L RD + ++S + Sbjct: 369 ---DWAAEGFSAVLLDPPRDGAFEVVRQIRKTGARRLLYVSCNPATLARDTVELISQGYR 425 Query: 341 IERLALFDQFPYTRHMECGVLL 362 ++R + D FP T H+E L Sbjct: 426 LKRAGILDMFPQTAHVEAMALF 447 >gi|219856479|ref|YP_002473601.1| hypothetical protein CKR_3136 [Clostridium kluyveri NBRC 12016] gi|219570203|dbj|BAH08187.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 478 Score = 83.6 bits (205), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 51/163 (31%), Positives = 85/163 (52%), Gaps = 17/163 (10%) Query: 208 GIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265 G+ G+ + + YCG G SL L++ +V VEI ++E A N A N ++NV+ + Sbjct: 326 GLTGNEVIFDAYCGTGTISLFLSQKAKKVYGVEIIPQAIENANMNAAENGIDNVEFITGK 385 Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISC 323 S++ + ++ R + VDPPR G ++A + + P I+Y+SC Sbjct: 386 SEKVIPELIKK------------GVRADVVVVDPPRKGCEEALLHSIADMRPRTIVYVSC 433 Query: 324 NPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVRK 365 +P +L RDL+IL + +E++ D FP T H+E V L R+ Sbjct: 434 DPATLARDLAILRDFGYRVEKVQPVDMFPQTSHVETIVSLQRE 476 >gi|223986649|ref|ZP_03636641.1| hypothetical protein HOLDEFILI_03963 [Holdemania filiformis DSM 12042] gi|223961380|gb|EEF65900.1| hypothetical protein HOLDEFILI_03963 [Holdemania filiformis DSM 12042] Length = 453 Score = 83.6 bits (205), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 50/162 (30%), Positives = 82/162 (50%), Gaps = 17/162 (10%) Query: 208 GIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265 G+ G+ ++++YCG G L AR RV+ +EI +VE A+ N N + N + + Sbjct: 302 GLTGEETVIDVYCGTGTIGLSAARKAKRVIGIEIVPSAVEDAKRNAVRNGIANAEFICGD 361 Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISC 323 + T + R + VDPPR GLD T+ +V+ P I+Y+SC Sbjct: 362 AGVCTAQLLERR------------IQPDVAIVDPPRKGLDGTTIDSLVKMNPERIVYVSC 409 Query: 324 NPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364 +P +L RD ++L+ + +E + D FP T H+E VL+ + Sbjct: 410 DPATLARDCAVLNERGYGVEVVQPVDMFPQTTHVETVVLMSK 451 >gi|194466906|ref|ZP_03072893.1| RNA methyltransferase, TrmA family [Lactobacillus reuteri 100-23] gi|194453942|gb|EDX42839.1| RNA methyltransferase, TrmA family [Lactobacillus reuteri 100-23] Length = 456 Score = 83.6 bits (205), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 48/163 (29%), Positives = 80/163 (49%), Gaps = 18/163 (11%) Query: 208 GIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265 G+ G+ +++ YCG G SL +A+H +V VEI ++E A++N N + N K V Sbjct: 305 GLDGNQTVIDAYCGIGTISLAVAKHAKQVYGVEIVPAAIEDAKHNAKRNGIKNAKFV--- 361 Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISC 323 + E +F + + + + VDPPR GL ++ + ++Y+SC Sbjct: 362 ------VGKAEEQFAKWQ---AEGLKPDVVIVDPPRKGLAESLIEATGKMDPKKVIYVSC 412 Query: 324 NPDSLCRDLSILSTT--HTIERLALFDQFPYTRHMECGVLLVR 364 NP +L RD+ + H + + DQFP T H+E +L R Sbjct: 413 NPATLVRDIKRFADQGYHVTKPIQPVDQFPQTTHVESVTVLER 455 >gi|294784751|ref|ZP_06750039.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Fusobacterium sp. 3_1_27] gi|294486465|gb|EFG33827.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Fusobacterium sp. 3_1_27] Length = 463 Score = 83.6 bits (205), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 43/156 (27%), Positives = 80/156 (51%), Gaps = 15/156 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ Y G G +++A+ +V A+EI K + E N + N++ + + Sbjct: 320 IVDAYSGTGTIGMIMAKKAKKVYAIEIVKSASEDGEKTAKENGIKNIEFINGAV------ 373 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCR 330 E+E +L + ++ + TI DPPR GL+ + + V ++YISCNP + R Sbjct: 374 ---EKELVKLIN---NNQKIDTIIFDPPRKGLEASIIDTVAKLNLKEVVYISCNPSTFAR 427 Query: 331 DLSILSTT-HTIERLALFDQFPYTRHMECGVLLVRK 365 D+ + S + +++L D FP T H+EC L+V++ Sbjct: 428 DVKLFSEKGYVLKKLQAVDMFPQTSHIECVGLIVKE 463 >gi|330986720|gb|EGH84823.1| 23S rRNA m(5)U1939 methyltransferase [Pseudomonas syringae pv. lachrymans str. M301315] Length = 451 Score = 83.6 bits (205), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 61/202 (30%), Positives = 96/202 (47%), Gaps = 19/202 (9%) Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNF 223 D + RL L +R F Q NA +N M+E L + + +++L+CG GNF Sbjct: 261 DTLGYRLEPWNLQLAWR--PGDFIQVNAAVNTAMIEQALQWLAPAKDERVMDLFCGLGNF 318 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNRL 282 +L LA V+AVE VE A N +N ++NV+ + S+ T A Sbjct: 319 ALPLAGLAKEVVAVEGVATMVERAAVNAMSNDLHNVQFFQADLSQPLTHA---------- 368 Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP-HILYISCNPDSLCRD-LSILSTTHT 340 D + F + +DPPR G + + + +LY+SCNP +L RD + ++S + Sbjct: 369 ---DWAAEGFSAVLLDPPRDGAFEVVRQIRKTGARRLLYVSCNPATLARDTVELISQGYR 425 Query: 341 IERLALFDQFPYTRHMECGVLL 362 ++R + D FP T H+E L Sbjct: 426 LKRAGILDMFPQTAHVEAMALF 447 >gi|317502259|ref|ZP_07960432.1| 23S rRNA (Uracil-5-)-methyltransferase RumA [Lachnospiraceae bacterium 8_1_57FAA] gi|316896374|gb|EFV18472.1| 23S rRNA (Uracil-5-)-methyltransferase RumA [Lachnospiraceae bacterium 8_1_57FAA] Length = 590 Score = 83.6 bits (205), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 59/173 (34%), Positives = 88/173 (50%), Gaps = 18/173 (10%) Query: 208 GIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265 G++GD + +LYCG G SL LA+ +V VEI P+++ AR N N + N + Sbjct: 332 GLKGDETVWDLYCGIGTISLFLAQKAKQVYGVEIVPPAIDDARENALLNGIENAQFFVGK 391 Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISC 323 S+E ++ E + H+ I VDPPR G D + +++ P I+Y+SC Sbjct: 392 SEEILPKYYKDYEEQHGGE-KAHA---DVIVVDPPRKGCDAELLETILKMQPERIVYVSC 447 Query: 324 NPDSLCRDLSIL---------STTHTIERLALFDQFPYTRHMECGVLLV-RKP 366 + +L RDL IL + + IE+ DQFP T H+E VLL +KP Sbjct: 448 DSATLARDLKILCEGAQEDEKTAGYQIEKWRAVDQFPMTTHVETVVLLSQQKP 500 >gi|212638180|ref|YP_002314700.1| tRNA (Uracil-5-)-methyltransferase fused to TRAM domain [Anoxybacillus flavithermus WK1] gi|212559660|gb|ACJ32715.1| tRNA (Uracil-5-)-methyltransferase fused to TRAM domain [Anoxybacillus flavithermus WK1] Length = 452 Score = 83.6 bits (205), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 59/211 (27%), Positives = 97/211 (45%), Gaps = 23/211 (10%) Query: 166 YVDERLTVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGD-LLEL 216 + DE + +AG I + + +F Q N + + + V A + + +++ Sbjct: 254 FGDETIVLAGEPYIQEVLGDLSFELSARAFFQLNPIQTIKLYDEVKKAAALTKNERVVDA 313 Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276 YCG G L LAR V ++ +++ AR N + NV ++E +E Sbjct: 314 YCGVGTIGLWLAREAKEVRGMDTIPEAIDDARQNAERHGFTNVMYAVGKAEELLPKWVKE 373 Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYPH-ILYISCNPDSLCRDLSI 334 ++ I VDPPR+G D A + + Q P ++Y+SCNP SL RD+ Sbjct: 374 ------------GWKPDVIVVDPPRTGCDHALLKTILQVKPKTVVYVSCNPSSLARDIDT 421 Query: 335 LSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 L+ + +E + FD FP+T H+E LVRK Sbjct: 422 LTKQYRVEYIQPFDLFPHTAHVESVAKLVRK 452 >gi|126649590|ref|ZP_01721831.1| RNA methyltransferase [Bacillus sp. B14905] gi|126593915|gb|EAZ87838.1| RNA methyltransferase [Bacillus sp. B14905] Length = 459 Score = 83.6 bits (205), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 53/162 (32%), Positives = 80/162 (49%), Gaps = 17/162 (10%) Query: 209 IQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266 +QGD +++ YCG G SL LA+ V+ VEI ++E A+ N N N + Sbjct: 310 LQGDERVIDAYCGIGTISLFLAQKAKAVMGVEIVPQAIEDAKRNAVLNGFTNTYFEAGPA 369 Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCN 324 +E R + K+ D+ + VDPPR G D+A + + Q ++Y+SCN Sbjct: 370 EEVI-----PRWYKEGKEADV-------LVVDPPRKGCDEALLKTILEQRPKRVVYVSCN 417 Query: 325 PDSLCRDLSILS-TTHTIERLALFDQFPYTRHMECGVLLVRK 365 P +L RDL IL + + + D FP++ H E LVRK Sbjct: 418 PATLARDLRILEDGGYQTQEIQPVDMFPHSTHCEAVAWLVRK 459 >gi|19705034|ref|NP_602529.1| tRNA (Uracil-5-) -methyltransferase [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|50401614|sp|Q8R5Z8|Y1713_FUSNN RecName: Full=Uncharacterized RNA methyltransferase FN1713 gi|19712946|gb|AAL93828.1| tRNA (Uracil-5-) -methyltransferase [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 464 Score = 83.6 bits (205), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 44/156 (28%), Positives = 79/156 (50%), Gaps = 15/156 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ Y G G +++A+ +V A+EI K + E N + N++ + + Sbjct: 320 IVDAYSGTGTIGMIIAKKAKKVYAIEIVKSASEDGEKTAKENGIENIEFINGAV------ 373 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCR 330 E+E +L + ++ + TI DPPR GL+ + + V ++YISCNP + R Sbjct: 374 ---EKELVKLVN---NNQKIDTIIFDPPRKGLETSIIDKVAELNLKEVVYISCNPSTFAR 427 Query: 331 DLSILSTT-HTIERLALFDQFPYTRHMECGVLLVRK 365 D+ + S + +++L D FP T H+EC L+ RK Sbjct: 428 DVKLFSEKGYVLKKLQAVDMFPQTSHIECVGLIERK 463 >gi|56418877|ref|YP_146195.1| RNA methyltransferase [Geobacillus kaustophilus HTA426] gi|56378719|dbj|BAD74627.1| RNA methyltransferase [Geobacillus kaustophilus HTA426] Length = 457 Score = 83.6 bits (205), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 52/150 (34%), Positives = 73/150 (48%), Gaps = 17/150 (11%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G SL LAR V VEI ++E A+ N N + NV ++++ Sbjct: 314 VIDAYCGIGTISLFLARKAKHVYGVEIVPEAIEDAKRNAELNGIQNVTFEVGAAEDVIPR 373 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330 E R + VDPPR G D A + + A P ++Y+SCNP +L R Sbjct: 374 WYEE------------GVRADCLVVDPPRKGCDAALLETIIAMKPPRVVYVSCNPATLAR 421 Query: 331 DLSIL--STTHTIERLALFDQFPYTRHMEC 358 DL IL TIE + D FP+T H+EC Sbjct: 422 DLRILEDGGYETIE-VQPVDMFPHTAHVEC 450 >gi|323694104|ref|ZP_08108283.1| hypothetical protein HMPREF9475_03146 [Clostridium symbiosum WAL-14673] gi|323501821|gb|EGB17704.1| hypothetical protein HMPREF9475_03146 [Clostridium symbiosum WAL-14673] Length = 488 Score = 83.6 bits (205), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 65/219 (29%), Positives = 100/219 (45%), Gaps = 21/219 (9%) Query: 157 KTKICLDRDYVD----ERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD 212 KT + L R+ V+ +T + YR SF Q N + L G+ G+ Sbjct: 282 KTNVILGREVVNLYGPGYITDYIGNVKYRISPLSFYQVNP-VQTERLYGTALEYAGLTGE 340 Query: 213 --LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270 + +LYCG G SL L++ +V VEI ++E AR N N + NV+ ++E Sbjct: 341 ETVWDLYCGIGTISLFLSQKAKKVYGVEIVPQAIEDARENARLNGIENVEFFVGKAEEVL 400 Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSL 328 E + D+ I VDPPR G D + + ++Y+SC+ +L Sbjct: 401 PKQYEEDKV--YADV---------IVVDPPRKGCDPVCLDTIVMMGPKKVVYVSCDSATL 449 Query: 329 CRDLSILST-THTIERLALFDQFPYTRHMECGVLLVRKP 366 RD+ L + +ER++ D FP + H+E LLVRKP Sbjct: 450 ARDVKYLEERGYWVERVSCVDMFPMSGHVETATLLVRKP 488 >gi|219849086|ref|YP_002463519.1| RNA methyltransferase, TrmA family [Chloroflexus aggregans DSM 9485] gi|219543345|gb|ACL25083.1| RNA methyltransferase, TrmA family [Chloroflexus aggregans DSM 9485] Length = 414 Score = 83.6 bits (205), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 99/361 (27%), Positives = 154/361 (42%), Gaps = 54/361 (14%) Query: 18 VDRLRQMMLAFQVPNLQIFRS-EPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYF 76 V+++R+ + +VP + + +P YR A H H YH T + +D Sbjct: 94 VEQIRKFLPGVEVPIRPVIAAPQPWGYRNSARLHADHTALG-YH-----ATGTKTVVD-L 146 Query: 77 MPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAI 136 + LL+ AL E +A +R P A L L + + + A Sbjct: 147 VDDPLLLPALR-EALAGLRRLPF--AGLISEVTLRASA---------------VYGYAAA 188 Query: 137 RLRDALHARKYQIQLIGRA--NKTKICLDRDYVDERLTVAGRT------LIYRQIENSFT 188 RL + A + +I + A T + DE L AG +++ +SF Sbjct: 189 RLLPTVTAHRNEIARLAAAWMATTPVLAGVTLADEPLVGAGAIFDELGEMVFHLSLSSFF 248 Query: 189 QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248 Q N MLE V A G LL+ Y G G+F+L LA ++ V+AVE +P+V Sbjct: 249 QVNHPQAERMLEIVRTALAPHGGRLLDAYSGVGSFALPLAAGYEDVVAVEAHQPAVADGE 308 Query: 249 YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDAT 308 + N V+NV+ V ++ ER L S F + +DPPR G A Sbjct: 309 QSAFLNKVSNVRFVAGAA---------ERVIGHL------SGPFHAVILDPPRRGCHPAV 353 Query: 309 V-GMVQAYPH-ILYISCNPDSLCRDLSILSTT--HTIERLALFDQFPYTRHMECGVLLVR 364 + +++ P I+Y+SC+P + RDL+ L H I+ + D FP T H+E V+L R Sbjct: 354 LTALIKHAPRCIVYVSCHPGLIGRDLAPLVAAGYHCIQ-VQPIDLFPQTPHIETVVVLER 412 Query: 365 K 365 Sbjct: 413 S 413 >gi|254443794|ref|ZP_05057270.1| 23S rRNA (uracil-5-)-methyltransferase [Verrucomicrobiae bacterium DG1235] gi|198258102|gb|EDY82410.1| 23S rRNA (uracil-5-)-methyltransferase [Verrucomicrobiae bacterium DG1235] Length = 414 Score = 83.6 bits (205), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 69/276 (25%), Positives = 123/276 (44%), Gaps = 30/276 (10%) Query: 101 RAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKI 160 + K I +L + + V + + L+ DA E +R A ++ Q K Sbjct: 156 KDKPMTIGFLKAGTRSRYVEVEHCPLISDAMNETLTDVR----ADTFRRQKEKPFKKGGT 211 Query: 161 CLDRDYVDERLTVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGD 212 L R+++D +T + +I Q+ + F Q N I +V + Sbjct: 212 LLIREHLD-GITTDPKAIIREQVGDITFSFLAGEFFQNNPSILPAFTGYVRDKARDAGAK 270 Query: 213 -LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271 L++ YCG+G F L A+ F+ + +E+++ SV+ A N N + N + + Sbjct: 271 YLVDAYCGSGLFCLTAAKDFEEAIGIEVSEQSVQYAVQNAKDNQIENARFAVGDAAAI-- 328 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLC 329 F+++K S + +DPPR G + + + A+ ++Y+SCNP + Sbjct: 329 -------FSQIKFPGEDS----AVVIDPPRKGSSEDFLNQLIAFGPRSVIYVSCNPATQM 377 Query: 330 RDLSI-LSTTHTIERLALFDQFPYTRHMECGVLLVR 364 RDL + L + I+ + FD FP TRH+EC V+L + Sbjct: 378 RDLQVLLGGGYAIDEIQPFDLFPQTRHLECVVVLKK 413 >gi|325262190|ref|ZP_08128928.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium sp. D5] gi|324033644|gb|EGB94921.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium sp. D5] Length = 471 Score = 83.6 bits (205), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 68/230 (29%), Positives = 107/230 (46%), Gaps = 23/230 (10%) Query: 142 LHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEW 201 LH + + ++++T++ +DY ER+ + ++ SF QPN+ + E Sbjct: 246 LHILNDSLSDVVQSDETRVLYGKDYFYERIL----GMEFKITPFSFFQPNSRGAEVLYET 301 Query: 202 VLAATKGIQG-DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK 260 V IQ + +L+ G G VLA +V+ VEI + +VEAAR N A N + N + Sbjct: 302 VREYIGDIQDMTVFDLFSGTGTIGQVLAPVAKQVIGVEIVEEAVEAARENAARNGLGNCR 361 Query: 261 IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHI 318 + F L +I+ + I +DPPR G+ + + Y I Sbjct: 362 FIAGDV------------FKVLDEIE---EKPDVIVLDPPRDGIHPKALPKILDYQVDRI 406 Query: 319 LYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVLLVRKPS 367 +YISC SL RDL IL + +E++ DQF T H+E LL RK + Sbjct: 407 VYISCKATSLTRDLEMILGRGYRVEKVVAVDQFCETVHVETVALLTRKKA 456 >gi|170760987|ref|YP_001788698.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum A3 str. Loch Maree] gi|169407976|gb|ACA56387.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum A3 str. Loch Maree] Length = 461 Score = 83.6 bits (205), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 48/156 (30%), Positives = 78/156 (50%), Gaps = 15/156 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + + YCG G SL L++ +V VEI K +++ A+ N N ++N + S+E Sbjct: 316 VFDAYCGTGTISLFLSQKAKKVYGVEIIKEAIDNAKDNAKENKIDNAEFFVGKSEEV--- 372 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330 + D+ + + VDPPR G + + + + A I+Y+SC+P +L R Sbjct: 373 ---------IPDLINKGIKADVVVVDPPRKGCEKSLLEAIAATRPKRIVYVSCDPGTLAR 423 Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVRK 365 DL IL+ + + + D FP T H+E VLL RK Sbjct: 424 DLGILNGLGYETKEVQPVDMFPQTSHVETCVLLQRK 459 >gi|150015413|ref|YP_001307667.1| RNA methyltransferase [Clostridium beijerinckii NCIMB 8052] gi|149901878|gb|ABR32711.1| RNA methyltransferase, TrmA family [Clostridium beijerinckii NCIMB 8052] Length = 452 Score = 83.6 bits (205), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 58/217 (26%), Positives = 99/217 (45%), Gaps = 31/217 (14%) Query: 157 KTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD---- 212 K + +DY+ E L L + SF Q N E + + K GD Sbjct: 258 KVNVLFGKDYIRETLL----ELQFNISPFSFFQ----TNTKGAESLYSIVKEFMGDSEEK 309 Query: 213 -LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271 + +LYCG G ++A + +V+ +E+ + +VEAAR N N +NN + + E + Sbjct: 310 IVFDLYCGTGTIGQIVAPNAKKVIGIELIEEAVEAARENAKLNGLNNCEFIAGDVAEIIK 369 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLC 329 ++ + + I +DPPR+G+ + V + P I+Y+SCNP +L Sbjct: 370 TVKVKPDI---------------IILDPPRTGVHPKALDYVIKFNAPEIIYVSCNPKTLV 414 Query: 330 RDLSILS-TTHTIERLALFDQFPYTRHMECGVLLVRK 365 DL +L+ + + + + D FP T H E V L ++ Sbjct: 415 NDLRVLTEKGYKVIKTKVKDMFPNTPHAETVVRLTKE 451 >gi|285019297|ref|YP_003377008.1| 23s rrna (uracil-5-)-methyltransferase [Xanthomonas albilineans GPE PC73] gi|283474515|emb|CBA17016.1| probable 23s rrna (uracil-5-)-methyltransferase protein [Xanthomonas albilineans] Length = 467 Score = 83.6 bits (205), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 60/184 (32%), Positives = 91/184 (49%), Gaps = 18/184 (9%) Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLA 236 L +R ++ F Q NA +N M+ LA GD +L+L+CG GNF+L LAR V+ Sbjct: 291 LAFRPLD--FIQVNAVLNQQMIAHALALLDAQSGDRVLDLFCGLGNFTLPLARTVREVVG 348 Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296 VE V AR N N ++N + + + TQ R+ + F + Sbjct: 349 VEGDAGLVTRARENAQRNGLDNAQFF---AADLTQDQRQAPWMRQ---------GFDKLL 396 Query: 297 VDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDLSILSTTH--TIERLALFDQFPYT 353 +DPPRSG + + ++ + I+Y+SC+P SL RD S L T ++ D FP+T Sbjct: 397 LDPPRSGALEVLQQLPLKQFQRIVYVSCHPGSLARDASYLVNTQGFVLKAAGAMDMFPHT 456 Query: 354 RHME 357 H+E Sbjct: 457 AHVE 460 >gi|297205587|ref|ZP_06922983.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus jensenii JV-V16] gi|297150165|gb|EFH30462.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus jensenii JV-V16] Length = 481 Score = 83.6 bits (205), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 51/156 (32%), Positives = 76/156 (48%), Gaps = 15/156 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ Y G G L +A+H +V VEI KP+V+ AR N N + N + V ++E Sbjct: 338 VIDAYSGIGTIGLSVAKHVKQVYGVEIVKPAVQDARENALLNGIENAEYVCGKAEELMPN 397 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330 E + IFVDPPR GL + V+ P I+YISCNP ++ R Sbjct: 398 WVNE------------GMKADVIFVDPPRKGLTPEFIEASVKTNPQKIVYISCNPATMVR 445 Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVRK 365 DL++ + E + D FP T H+E +L +K Sbjct: 446 DLTMYQELGYDFEEITPVDMFPQTPHVESVTVLEKK 481 >gi|227363773|ref|ZP_03847880.1| TrmA family tRNA (uracil-5-)-methyltransferase [Lactobacillus reuteri MM2-3] gi|325682984|ref|ZP_08162500.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus reuteri MM4-1A] gi|227071130|gb|EEI09446.1| TrmA family tRNA (uracil-5-)-methyltransferase [Lactobacillus reuteri MM2-3] gi|324977334|gb|EGC14285.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus reuteri MM4-1A] Length = 480 Score = 83.6 bits (205), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 48/163 (29%), Positives = 80/163 (49%), Gaps = 18/163 (11%) Query: 208 GIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265 G+ G+ +++ YCG G SL +A+H +V VEI ++E A++N N + N K V Sbjct: 326 GLDGNQTVIDAYCGIGTISLAVAKHAKQVYGVEIVPAAIEDAKHNAKRNGIKNAKFV--- 382 Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISC 323 + E +F + + + + VDPPR GL ++ + ++Y+SC Sbjct: 383 ------VGKAEEQFAKWQ---AEGLKPDVVIVDPPRKGLAESLIEATGKMGPKKVIYVSC 433 Query: 324 NPDSLCRDLSILSTT--HTIERLALFDQFPYTRHMECGVLLVR 364 NP +L RD+ + H + + DQFP T H+E +L R Sbjct: 434 NPATLVRDIKRFADQGYHVTKPIQPVDQFPQTTHVESVTVLER 476 >gi|331083695|ref|ZP_08332806.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lachnospiraceae bacterium 6_1_63FAA] gi|330403906|gb|EGG83458.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lachnospiraceae bacterium 6_1_63FAA] Length = 458 Score = 83.6 bits (205), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 51/152 (33%), Positives = 77/152 (50%), Gaps = 14/152 (9%) Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274 +LYCG G SL LA+ +V VEI ++E AR N N + N + ++E A Sbjct: 311 DLYCGIGTISLFLAQKAKKVYGVEIVPAAIEDARKNAEINGIENAEFFVGKAEEVLPAKY 370 Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCRDL 332 +E I VDPPR G D A + M+ P I+Y+SC+ +L RDL Sbjct: 371 KE-----------DGVYADVIVVDPPRKGCDGALIETMLSMKPERIVYVSCDSATLARDL 419 Query: 333 SIL-STTHTIERLALFDQFPYTRHMECGVLLV 363 +L + +E++A+ D FP + H+E VL++ Sbjct: 420 KVLCEKEYQVEKVAVCDMFPGSVHVETVVLMM 451 >gi|124002028|ref|ZP_01686882.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Microscilla marina ATCC 23134] gi|123992494|gb|EAY31839.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Microscilla marina ATCC 23134] Length = 481 Score = 83.2 bits (204), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 60/193 (31%), Positives = 95/193 (49%), Gaps = 16/193 (8%) Query: 177 TLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRV 234 TL +R SF Q NA + L V ++GD + +LY G G + +A +V Sbjct: 296 TLKFRVGAKSFYQTNAS-QAYELYKVAGEMADLKGDEVVYDLYTGTGTIANFIAHKAKKV 354 Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294 + +E ++E A+ N N ++N + + EF +++H + Sbjct: 355 IGLEYVPMAIENAKVNSEINSIDNTSFFAGDIQHLL-----DEEF-----VELHGHP-NV 403 Query: 295 IFVDPPRSGLDDATVGMVQ-AYP-HILYISCNPDSLCRDLSILSTTHTIERLALFDQFPY 352 I DPPRSG+ V M++ A P I+Y+SCNP + RDL++L+ + I + D FP+ Sbjct: 404 IITDPPRSGMHADVVEMLKKASPDKIVYVSCNPATQARDLAMLADEYDITAVQPVDMFPH 463 Query: 353 TRHMECGVLLVRK 365 T H+E VLL RK Sbjct: 464 THHVENVVLLERK 476 >gi|302379709|ref|ZP_07268194.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Finegoldia magna ACS-171-V-Col3] gi|302312616|gb|EFK94612.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Finegoldia magna ACS-171-V-Col3] Length = 442 Score = 83.2 bits (204), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 59/203 (29%), Positives = 92/203 (45%), Gaps = 20/203 (9%) Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFS 224 Y E LT L +R SF QPN + L + G ++ +LYCG G + Sbjct: 255 YGKEYLTEKINGLEFRISPFSFFQPNPAQAEQIYTRALELAGDLSGKNVYDLYCGTGTIA 314 Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284 + A+ + V+ VEI + +VE A+ N N + N K + F + + + KD Sbjct: 315 QIFAKKSESVIGVEIVEEAVEKAKENAKLNGLTNTKFICDDCLNFMEKVEK-------KD 367 Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCRDL-SILSTTHTI 341 + + +DPPR G+ + ++ P +YISCNP + DL + + I Sbjct: 368 V---------VVLDPPRDGIHPKAIDRLIDINPDKFIYISCNPITQRMDLDKFIEKGYKI 418 Query: 342 ERLALFDQFPYTRHMECGVLLVR 364 + L FDQFP T H E V+L + Sbjct: 419 KSLEFFDQFPRTYHCEAVVMLEK 441 >gi|270291082|ref|ZP_06197305.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Pediococcus acidilactici 7_4] gi|270280478|gb|EFA26313.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Pediococcus acidilactici 7_4] Length = 455 Score = 83.2 bits (204), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 68/245 (27%), Positives = 118/245 (48%), Gaps = 37/245 (15%) Query: 138 LRDALHARKYQIQLIGRAN--KTKICLDRDYVDERLTVAGRTLIYRQI--------ENSF 187 + +A+H + +I N +T + + ++ +RL +AG ++I+ ++ +SF Sbjct: 229 IAEAIHQIDGVVSVIQNINPKQTNVIMGKE---DRL-LAGESVIHDELLGQKFIISAHSF 284 Query: 188 TQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 Q N + L + G+ G +L++Y G G SL +A+ +V VEI K +V+ Sbjct: 285 YQVNP-VQTEKLYQLAIKKAGLTGKETVLDVYSGIGTISLAMAQAAKKVYGVEIVKEAVQ 343 Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD 305 A+ N N NVK V +++ + E + + VDPPR GLD Sbjct: 344 DAKVNAVQNQAKNVKFVVGKAEDQMAKWQAE------------GMQPDVVVVDPPRKGLD 391 Query: 306 ----DATVGMVQAYPHILYISCNPDSLCRDLS-ILSTTHTIER-LALFDQFPYTRHMECG 359 DATV M A ++Y+SCNP +L RD+ + + +++ + DQFP T H+E Sbjct: 392 ESVIDATVAM--APKRVVYVSCNPATLVRDIDRFQAQGYKVDQPITPVDQFPQTPHVESV 449 Query: 360 VLLVR 364 ++ R Sbjct: 450 TVMSR 454 >gi|304406301|ref|ZP_07387958.1| RNA methyltransferase, TrmA family [Paenibacillus curdlanolyticus YK9] gi|304344885|gb|EFM10722.1| RNA methyltransferase, TrmA family [Paenibacillus curdlanolyticus YK9] Length = 513 Score = 83.2 bits (204), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 67/213 (31%), Positives = 102/213 (47%), Gaps = 28/213 (13%) Query: 166 YVDERLTVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWVL--AATKGIQGDLLE 215 + DE T+ G +IY +++ SF Q N V + + A G + +++ Sbjct: 310 FGDETRTLWGSDVIYDELDGIRFAISARSFYQVNPSQTVALYRKAVDYAGLTGAE-TVID 368 Query: 216 LYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275 YCG G SL LAR RV VE+ ++E A+ N N + N + S+ + R Sbjct: 369 AYCGIGTISLFLARKAGRVYGVEVVPEAIEDAKRNAELNGIANAEFEAGLSE---VVIPR 425 Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCRDLS 333 RE D+ I VDPPR G D A + +++ P ++Y+SCNP +L RDL Sbjct: 426 WREEGIAADV---------IVVDPPRKGCDAALLDTIIRMKPERVVYVSCNPSTLARDLR 476 Query: 334 IL--STTHTIERLALFDQFPYTRHMECGVLLVR 364 +L T+E + D FP+T H+E LLV+ Sbjct: 477 VLEDGGYRTVE-VTPVDMFPWTVHVENVALLVK 508 >gi|284049068|ref|YP_003399407.1| RNA methyltransferase, TrmA family [Acidaminococcus fermentans DSM 20731] gi|283953289|gb|ADB48092.1| RNA methyltransferase, TrmA family [Acidaminococcus fermentans DSM 20731] Length = 458 Score = 83.2 bits (204), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 48/154 (31%), Positives = 80/154 (51%), Gaps = 17/154 (11%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK-IVRMSSKEFTQ 271 +++ YCG G +L LA+ R L +EI +P++ AR N N V+NV + ++KE + Sbjct: 315 VIDAYCGTGTITLFLAQKAKRALGIEIVEPAIRDARQNARDNQVSNVDFLCGDAAKEMPE 374 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLC 329 +R+ R + +DPPR+G + + + + P ++Y+SCNP SL Sbjct: 375 LVRQ-------------GSRPDVVVLDPPRAGCEQRVLEAIAKVRPQRVVYVSCNPASLA 421 Query: 330 RDLSIL-STTHTIERLALFDQFPYTRHMECGVLL 362 RD +IL + ++ D FP+T H+E LL Sbjct: 422 RDAAILRDKGFVVRKVQPVDMFPHTSHVETVCLL 455 >gi|262273704|ref|ZP_06051517.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Grimontia hollisae CIP 101886] gi|262222119|gb|EEY73431.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Grimontia hollisae CIP 101886] Length = 438 Score = 83.2 bits (204), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 58/198 (29%), Positives = 97/198 (48%), Gaps = 19/198 (9%) Query: 172 TVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARH 230 ++ G+TL + F Q NA IN M+ L + D +L+L+CG GNFSL LA Sbjct: 256 SIGGQTLAFE--PQDFIQVNADINEKMIAQALDWLALDESDKVLDLFCGLGNFSLPLAEK 313 Query: 231 FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK-EFTQAMRREREFNRLKDIDIHS 289 V+ +E + V A N +N+ N + + + + T + + ++N+ Sbjct: 314 VKAVVGIEGVEEMVARASQNALSNNQANARFYHANLELDVTGTVWGKEQYNK-------- 365 Query: 290 YRFKTIFVDPPRSGLDDATVGMVQAYPH-ILYISCNPDSLCRDLSI-LSTTHTIERLALF 347 I +DP R+G + + Q+ ++Y+SCNP +L RD + L + + RL + Sbjct: 366 -----ILLDPARAGALEVMPYVAQSEAERVVYVSCNPATLARDSQVLLENGYQLVRLGML 420 Query: 348 DQFPYTRHMECGVLLVRK 365 D FP+T H+E L VR+ Sbjct: 421 DMFPHTGHLESMALFVRE 438 >gi|227530251|ref|ZP_03960300.1| TrmA family tRNA (uracil-5-)-methyltransferase [Lactobacillus vaginalis ATCC 49540] gi|227349840|gb|EEJ40131.1| TrmA family tRNA (uracil-5-)-methyltransferase [Lactobacillus vaginalis ATCC 49540] Length = 458 Score = 83.2 bits (204), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 48/163 (29%), Positives = 81/163 (49%), Gaps = 18/163 (11%) Query: 208 GIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265 G+ G +++ YCG G SL +A+H +V VEI +++ A++N N + N K V Sbjct: 305 GLDGSQTVIDAYCGIGTISLAVAKHAKQVYGVEIVPAAIDDAKHNAKRNGIKNAKFV--- 361 Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISC 323 + E +F + ++ + + VDPPR GL ++ + A ++Y+SC Sbjct: 362 ------VGKAEEQFAKWQE---DGLKPDVVIVDPPRKGLAESLIEATGKMAPQKVIYVSC 412 Query: 324 NPDSLCRDLSILSTT--HTIERLALFDQFPYTRHMECGVLLVR 364 NP +L RD+ + H + + DQFP T H+E +L R Sbjct: 413 NPATLIRDIQRFAEQGYHVTKPIQPVDQFPQTTHVESVAVLER 455 >gi|195591421|ref|XP_002085439.1| GD12311 [Drosophila simulans] gi|194197448|gb|EDX11024.1| GD12311 [Drosophila simulans] Length = 605 Score = 83.2 bits (204), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 48/168 (28%), Positives = 86/168 (51%), Gaps = 20/168 (11%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +L++ CG G +L A+H +V+ VEI +++ A +N AN + N K ++ +F ++ Sbjct: 419 MLDICCGTGTITLAFAKHCKKVMGVEIVPDAIKDAEFNAEANGIKNAKFFTGNADDFIKS 478 Query: 273 MRREREFNR--LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ---AYPHILYISCNPDS 327 M RE +++ +K +D+ VDPPR+GL ++ ++ A ++Y+SCNP S Sbjct: 479 MVREALYDQEPVKPLDL------IAVVDPPRAGLHHRSIAAIRSADAINRLVYVSCNPHS 532 Query: 328 LCRDLSILSTTHTIE---------RLALFDQFPYTRHMECGVLLVRKP 366 R+ L+ + + D FP+T H E +L R+P Sbjct: 533 AKRNFIELARPESKQYKGEPFYPKSAVAVDMFPHTMHTELVILFEREP 580 >gi|330974367|gb|EGH74433.1| 23S rRNA m(5)U1939 methyltransferase [Pseudomonas syringae pv. aceris str. M302273PT] Length = 451 Score = 83.2 bits (204), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 56/182 (30%), Positives = 89/182 (48%), Gaps = 17/182 (9%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 F Q NA +N M+E L + + +++L+CG GNF+L LA V+AVE Sbjct: 279 GDFIQVNAAVNTAMIEQALQWLAPAKDERVMDLFCGLGNFALPLAGLARDVVAVEGVATM 338 Query: 244 VEAARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302 VE A N +N ++NV+ + S+ TQA D + F + +DPPR Sbjct: 339 VERAAVNAMSNDLHNVRFFQADLSQPLTQA-------------DWAAEGFSAVLLDPPRD 385 Query: 303 GLDDATVGMVQAYP-HILYISCNPDSLCRD-LSILSTTHTIERLALFDQFPYTRHMECGV 360 G + + + +LY+SCNP +L RD + ++ + ++R + D FP T H+E Sbjct: 386 GAFEVVRQIRKTGARRLLYVSCNPATLARDAVELIRQGYRLKRAGILDMFPQTAHVEAMA 445 Query: 361 LL 362 L Sbjct: 446 LF 447 >gi|292670870|ref|ZP_06604296.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Selenomonas noxia ATCC 43541] gi|292647491|gb|EFF65463.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Selenomonas noxia ATCC 43541] Length = 465 Score = 83.2 bits (204), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 56/188 (29%), Positives = 88/188 (46%), Gaps = 26/188 (13%) Query: 181 RQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240 RQ E + Q A ++H E V+ A YCG G +L LA+ +V +EI Sbjct: 299 RQAERLYEQALAYADLHGTETVIDA-----------YCGTGTITLFLAQRARKVYGIEIV 347 Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300 +P++ AR N NHV N + + + A+ ++ R + +DPP Sbjct: 348 QPAILDARKNARDNHVKNAEFIVGDATAVMPALYKQ------------GIRPDVVVIDPP 395 Query: 301 RSGLDDATV-GMVQAYPH-ILYISCNPDSLCRDLSILSTTHTI-ERLALFDQFPYTRHME 357 R+G ++ + P I+Y+SCNP +L RDL+IL I + + D FP T H+E Sbjct: 396 RAGCNETVLCTFANMRPQRIIYVSCNPATLARDLAILKELGYITQEVQPVDLFPQTSHVE 455 Query: 358 CGVLLVRK 365 L+ +K Sbjct: 456 NVALITKK 463 >gi|312870826|ref|ZP_07730932.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners LEAF 3008A-a] gi|312873060|ref|ZP_07733119.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners LEAF 2062A-h1] gi|311091293|gb|EFQ49678.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners LEAF 2062A-h1] gi|311093702|gb|EFQ52040.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners LEAF 3008A-a] Length = 450 Score = 83.2 bits (204), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 51/155 (32%), Positives = 76/155 (49%), Gaps = 15/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ Y G G L +A+H +VL VEI + +V+ A+ N N VNN + ++E Sbjct: 304 VIDAYSGIGTIGLSVAKHVKKVLGVEIVRDAVKDAKKNAILNGVNNAEYFEGKAEELMPQ 363 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCR 330 E + IFVDPPR GL D + V P I+YISCNP ++ R Sbjct: 364 WANE------------GLKTDVIFVDPPRKGLTDTFIKAAVATSPKKIVYISCNPATMIR 411 Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364 DL + + + + + D FP T H+E VLL + Sbjct: 412 DLRVFQAAGYDFDCIDPVDMFPQTPHVETIVLLSK 446 >gi|309803859|ref|ZP_07697944.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners LactinV 11V1-d] gi|308164093|gb|EFO66355.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners LactinV 11V1-d] Length = 450 Score = 83.2 bits (204), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 51/155 (32%), Positives = 76/155 (49%), Gaps = 15/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ Y G G L +A+H +VL VEI + +V+ A+ N N VNN + ++E Sbjct: 304 VIDAYSGIGTIGLSVAKHVKKVLGVEIVRDAVKDAKKNAILNGVNNAEYFEGKAEELMPQ 363 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCR 330 E + IFVDPPR GL D + V P I+YISCNP ++ R Sbjct: 364 WANE------------GLKTDVIFVDPPRKGLTDTFIKAAVATSPKKIVYISCNPATMIR 411 Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364 DL + + + + + D FP T H+E VLL + Sbjct: 412 DLRVFQAAGYDFDCIDPVDMFPQTPHVETIVLLSK 446 >gi|284009169|emb|CBA76214.1| 23S rRNA (uracil-5-)-methyltransferase [Arsenophonus nasoniae] Length = 466 Score = 83.2 bits (204), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 64/205 (31%), Positives = 97/205 (47%), Gaps = 35/205 (17%) Query: 180 YRQIEN--------SFTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVL 227 Y IEN +F Q N IN M L+W+ K +L+L+CG GNF+L + Sbjct: 279 YYSIENVKLTFDPQNFIQVNPEINKKMVAQALDWLALEPKD---RVLDLFCGMGNFTLPI 335 Query: 228 ARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDI 287 A H V+ VE V RYN + N R+++ EF QA + E ID Sbjct: 336 ACHVHSVVGVEGVTELVAQGRYNASLN--------RLTNAEFYQA---DLEL----AIDC 380 Query: 288 HSYR---FKTIFVDPPRSGLDDATVGMVQAYPH-ILYISCNPDSLCRDLS-ILSTTHTIE 342 + F I +DP R+G +++ P ++YISCNP +L +D +L+ ++ + Sbjct: 381 QPWAKMGFNKILLDPARAGAIGVMSHIIKLKPERVVYISCNPTTLVKDSKQLLTASYQLM 440 Query: 343 RLALFDQFPYTRHMECGVLLVRKPS 367 + + D FP+T H+E L R S Sbjct: 441 SVRMLDMFPHTSHLESMALFCRDSS 465 >gi|307132369|ref|YP_003884385.1| 23S rRNA (Uracil-5-) -methyltransferase rumA [Dickeya dadantii 3937] gi|306529898|gb|ADM99828.1| 23S rRNA (Uracil-5-) -methyltransferase rumA [Dickeya dadantii 3937] Length = 444 Score = 83.2 bits (204), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 67/211 (31%), Positives = 94/211 (44%), Gaps = 19/211 (9%) Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCG 219 CL D R +AG +L + F Q N IN M+E L Q +L+L+CG Sbjct: 247 CLHGDMPSYR--IAGLSLAFS--PRDFIQVNDDINQRMVERALTWLDPQPQDRVLDLFCG 302 Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279 GNF+L LA V+ VE VE R N N + V +E + Sbjct: 303 MGNFTLPLAARAGSVVGVEGVAALVEKGRENAQRNGLTQVTFYHHDLEE---------DV 353 Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDLSIL-ST 337 R S F I +DP R+G +V+ P ++YISCNP +L RD +L + Sbjct: 354 TRQP---WASMGFDKILLDPARAGAPGVMPQIVKLAPRRVVYISCNPTTLARDSKVLMAA 410 Query: 338 THTIERLALFDQFPYTRHMECGVLLVRKPSG 368 + + RLA+ D FP+T H+E L + G Sbjct: 411 GYRLARLAMLDMFPHTGHLESMALFLLGSDG 441 >gi|323180215|gb|EFZ65767.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Escherichia coli 1180] Length = 160 Score = 83.2 bits (204), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 51/157 (32%), Positives = 78/157 (49%), Gaps = 20/157 (12%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +L+L+CG GNF+L LA+ V+ VE VE + N N + NV + +E Sbjct: 17 VLDLFCGMGNFTLPLAKQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEE---- 72 Query: 273 MRREREFNRLKDIDIHSYR---FKTIFVDPPRSGLDDATVGMVQAYP-HILYISCNPDSL 328 D+ + F + +DP R+G +++ P I+Y+SCNP +L Sbjct: 73 -----------DVTKQPWAKNGFDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATL 121 Query: 329 CRDL-SILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 RD ++L +TI RLA+ D FP+T H+E VL R Sbjct: 122 ARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSR 158 >gi|117919559|ref|YP_868751.1| 23S rRNA 5-methyluridine methyltransferase [Shewanella sp. ANA-3] gi|143581951|sp|A0KU76|RUMA_SHESA RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|117611891|gb|ABK47345.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Shewanella sp. ANA-3] Length = 449 Score = 83.2 bits (204), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 60/184 (32%), Positives = 92/184 (50%), Gaps = 22/184 (11%) Query: 185 NSFTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240 +F Q NA IN M LEW LA G + +L+L+CG GNFSL LA+ V+ VE Sbjct: 278 GNFVQVNAQINKTMVAQALEW-LAPQPGER--ILDLFCGMGNFSLPLAKLGAEVIGVEGV 334 Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300 V AR N AAN ++N+ + + + E ++ + +DP Sbjct: 335 PEMVSQARENAAANGLSNLTFYH---GDLSADLSCEPWMGKI----------DKLLLDPA 381 Query: 301 RSGLDDATVGMVQAYP-HILYISCNPDSLCRDLSI-LSTTHTIERLALFDQFPYTRHMEC 358 R+G ++ + + P ++Y+SCNP SL RD ++ L + +++L L D FP T H+E Sbjct: 382 RAGAFESLQWLKKMKPRQVVYVSCNPASLARDSAVLLERGYKLQKLGLIDMFPQTHHIEA 441 Query: 359 GVLL 362 L Sbjct: 442 MALF 445 >gi|149244082|ref|XP_001526584.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL YB-4239] gi|146448978|gb|EDK43234.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL YB-4239] Length = 407 Score = 83.2 bits (204), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 52/161 (32%), Positives = 83/161 (51%), Gaps = 21/161 (13%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L++ YCG+G FS+ + + +V+ VE++ SV+ AR+N N++ N + ++E Sbjct: 260 LVDAYCGSGLFSITCSTNVTKVIGVEVSADSVKFARHNATLNNIKNSHFIVGKAEEI--- 316 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330 KDID S + ++ +DPPR G DD + + Y I+YISCN S R Sbjct: 317 ---------FKDIDTPSEQ-TSVILDPPRKGCDDVFLNQLSEYKPAKIVYISCNVHSQAR 366 Query: 331 DLS-ILSTT-----HTIERLALFDQFPYTRHMECGVLLVRK 365 D+ L+ T + +E + FD FP T H+E +L K Sbjct: 367 DVEWFLNNTKNGELYKVESIKGFDFFPQTHHVESVAVLSMK 407 >gi|221508798|gb|EEE34367.1| RNA methyltransferase, putative [Toxoplasma gondii VEG] Length = 426 Score = 83.2 bits (204), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 50/157 (31%), Positives = 80/157 (50%), Gaps = 16/157 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 LL+ YCG G F+L FD V+ ++ S+E A+YN N + +K F ++ Sbjct: 240 LLDCYCGVGLFALACHDDFDEVVGFDVCSSSIELAKYNAQFNSKWRARFEVSDAKNFFES 299 Query: 273 MRREREFNRLKDIDIHSYRFKT---IFVDPPRSGLD-DATVGMVQAYPH-ILYISCNPDS 327 HS K+ + +DPPR G D + + +++ P I+YISC+P + Sbjct: 300 FSAG-----------HSSSDKSRLFVVLDPPRKGCDSEFLLSLLKLKPERIVYISCHPAT 348 Query: 328 LCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 RDL + +T++ + FD FP+TRH+EC + L R Sbjct: 349 QARDLKAVLPLYTVKNIQPFDMFPHTRHIECVITLER 385 >gi|297587406|ref|ZP_06946051.1| 23S rRNA (uracil-5-)-methyltransferase [Finegoldia magna ATCC 53516] gi|297575387|gb|EFH94106.1| 23S rRNA (uracil-5-)-methyltransferase [Finegoldia magna ATCC 53516] Length = 442 Score = 83.2 bits (204), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 60/204 (29%), Positives = 92/204 (45%), Gaps = 20/204 (9%) Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFS 224 Y E LT L +R SF QPN + L + G ++ +LYCG G + Sbjct: 255 YGKEYLTEKINGLEFRISPFSFFQPNPAQAEQIYNRALELAGDLSGKNVYDLYCGTGTIA 314 Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284 + A+ + V+ VEI +VE A+ N N + N + + F + + + KD Sbjct: 315 QIFAKKAESVIGVEIVAEAVEKAQENAELNGLTNTEFICDDCLNFMEKVEK-------KD 367 Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCRDL-SILSTTHTI 341 + + +DPPR G+ + ++ P +YISCNP + DL + + I Sbjct: 368 V---------VVLDPPRDGIHPKAIDRLIDINPDKFIYISCNPITQRMDLDKFIEKGYKI 418 Query: 342 ERLALFDQFPYTRHMECGVLLVRK 365 + L FDQFP T H E VLL +K Sbjct: 419 KSLEFFDQFPRTYHCEAVVLLEKK 442 >gi|332884588|gb|EGK04845.1| hypothetical protein HMPREF9456_00598 [Dysgonomonas mossii DSM 22836] Length = 469 Score = 83.2 bits (204), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 64/210 (30%), Positives = 97/210 (46%), Gaps = 26/210 (12%) Query: 169 ERLTVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGDLL--ELYC 218 E L G IY ++E SF Q N+ + L + + GD L +LY Sbjct: 273 EVLVWKGNDCIYEEMEGLKFKIGPKSFYQTNSE-QAYNLYKIARDFANLSGDELVYDLYT 331 Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE-FTQAMRRER 277 G G + +A +V+ +E + ++ AR N N ++N K+ TQ E Sbjct: 332 GTGTIANFVAGKAKKVIGIEYVEDAILDARVNSQINKIDNTLFYAGDMKDILTQDFINEH 391 Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGL-DDATVGMVQAYPH-ILYISCNPDSLCRDLSIL 335 R I DPPR+G+ DD ++ A P I+Y+SCNP + RDLS+L Sbjct: 392 G------------RPDVIITDPPRAGMHDDVIKTILFAEPERIVYVSCNPATQARDLSLL 439 Query: 336 STTHTIERLALFDQFPYTRHMECGVLLVRK 365 + +E++ D FP+T H+E VLLV+K Sbjct: 440 DEKYKVEKVQPVDMFPHTHHVENVVLLVKK 469 >gi|156740571|ref|YP_001430700.1| RNA methyltransferase [Roseiflexus castenholzii DSM 13941] gi|156231899|gb|ABU56682.1| RNA methyltransferase, TrmA family [Roseiflexus castenholzii DSM 13941] Length = 439 Score = 83.2 bits (204), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 57/187 (30%), Positives = 94/187 (50%), Gaps = 19/187 (10%) Query: 185 NSFTQPNAGINVHMLEWVLAATKG-IQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 +F Q N +L + A +G LL+LYCG G F+L LAR+ ++ VE + Sbjct: 265 TTFFQVNVAAAATLLNLIRAGLGDEARGRLLDLYCGAGAFTLPLARNAIEIVGVEEYAGA 324 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 V A + A NH++NV+ + S++ L ++D F + +DPPR G Sbjct: 325 VADAERSAAVNHISNVRFITGSAEAV------------LANLD---GPFDAVVLDPPRRG 369 Query: 304 LDDATV-GMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHMECGV 360 + +++ P I+Y+SC+P +L RDL ++++ + + R D FP T H+E V Sbjct: 370 CHPRVLHALIERAPRRIVYVSCHPATLARDLKTLIAGGYAVVRATPVDLFPQTPHIESVV 429 Query: 361 LLVRKPS 367 L+R S Sbjct: 430 ALMRAGS 436 >gi|259501117|ref|ZP_05744019.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners DSM 13335] gi|302190435|ref|ZP_07266689.1| RNA methyltransferase [Lactobacillus iners AB-1] gi|309806175|ref|ZP_07700192.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners LactinV 03V1-b] gi|259167811|gb|EEW52306.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners DSM 13335] gi|308167456|gb|EFO69618.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners LactinV 03V1-b] Length = 450 Score = 83.2 bits (204), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 50/155 (32%), Positives = 76/155 (49%), Gaps = 15/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ Y G G L +A+H +VL VEI + +V+ A+ N N +NN + ++E Sbjct: 304 VIDAYSGIGTIGLSVAKHVKKVLGVEIVRDAVKDAKKNAILNGINNAEYFEGKAEELMPQ 363 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCR 330 E + IFVDPPR GL D + V P I+YISCNP ++ R Sbjct: 364 WANE------------GLKTDVIFVDPPRKGLTDTFIKAAVATSPKKIVYISCNPATMIR 411 Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364 DL + + + + + D FP T H+E VLL + Sbjct: 412 DLQVFQAAGYDFDCIDPVDMFPQTPHVETIVLLSK 446 >gi|260587415|ref|ZP_05853328.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Blautia hansenii DSM 20583] gi|260542282|gb|EEX22851.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Blautia hansenii DSM 20583] Length = 475 Score = 83.2 bits (204), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 51/152 (33%), Positives = 77/152 (50%), Gaps = 14/152 (9%) Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274 +LYCG G SL LA+ +V VEI ++E AR N N + N + ++E A Sbjct: 328 DLYCGIGTISLFLAQKAKKVYGVEIVPAAIEDARKNAEINGIENAEFFVGKAEEVLPAKY 387 Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCRDL 332 +E I VDPPR G D A + M+ P I+Y+SC+ +L RDL Sbjct: 388 KE-----------DGVYADVIVVDPPRKGCDGALIETMLSMKPERIVYVSCDSATLARDL 436 Query: 333 SIL-STTHTIERLALFDQFPYTRHMECGVLLV 363 +L + +E++A+ D FP + H+E VL++ Sbjct: 437 KVLCEKEYQVEKVAVCDMFPGSVHVETVVLMM 468 >gi|330949798|gb|EGH50058.1| 23S rRNA m(5)U1939 methyltransferase [Pseudomonas syringae Cit 7] Length = 451 Score = 83.2 bits (204), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 61/202 (30%), Positives = 96/202 (47%), Gaps = 19/202 (9%) Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNF 223 D + RL L +R F Q NA +N M+E L + + +++L+CG GNF Sbjct: 261 DTLGYRLEPWNLQLAWR--PGDFIQVNAAVNTAMIEQALQWLAPAKDERVMDLFCGLGNF 318 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNRL 282 +L LA V+AVE VE A N +N ++NV+ + S+ T A Sbjct: 319 ALPLAGLAREVVAVEGVATMVERAAVNAMSNDLHNVQFFQADLSQPLTHA---------- 368 Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP-HILYISCNPDSLCRD-LSILSTTHT 340 D + F + +DPPR G + + + +LY+SCNP +L RD + ++S + Sbjct: 369 ---DWAAEGFSAVLLDPPRDGAFEVVRQIRKTGARRLLYVSCNPATLARDTVELISQGYR 425 Query: 341 IERLALFDQFPYTRHMECGVLL 362 ++R + D FP T H+E L Sbjct: 426 LKRAGILDMFPQTAHVEAMALF 447 >gi|325507937|gb|ADZ19573.1| SAM-dependent methyltransferase [Clostridium acetobutylicum EA 2018] Length = 460 Score = 83.2 bits (204), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 49/155 (31%), Positives = 80/155 (51%), Gaps = 15/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + + YCG G SL L+++ +V VEI ++E A+ N N + N + + Sbjct: 315 VFDAYCGTGTISLFLSQNAKKVYGVEIIPEAIENAKINAKQNGIENTEFI---------V 365 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330 + E E +L + I + + VDPPR G + + + + +A P I+Y+SC+P +L R Sbjct: 366 GKSEEEIPKLIEKGIAP---EVVVVDPPRKGCEKSLLHSIAEASPKTIVYVSCDPATLSR 422 Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364 DL ILS + + + D FP T H+E VL+ R Sbjct: 423 DLGILSELGYEVNEVQPVDMFPMTGHVETIVLIKR 457 >gi|15893813|ref|NP_347162.1| SAM-dependent methyltransferase [Clostridium acetobutylicum ATCC 824] gi|50401652|sp|Q97LN4|Y523_CLOAB RecName: Full=Uncharacterized RNA methyltransferase CA_C0523 gi|15023386|gb|AAK78502.1|AE007567_4 SAM-dependent methyltransferase related to tRNA(uracyl-5-)-methyltransferase (trmA family) [Clostridium acetobutylicum ATCC 824] Length = 460 Score = 83.2 bits (204), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 49/155 (31%), Positives = 80/155 (51%), Gaps = 15/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + + YCG G SL L+++ +V VEI ++E A+ N N + N + + Sbjct: 315 VFDAYCGTGTISLFLSQNAKKVYGVEIIPEAIENAKINAKQNGIENTEFI---------V 365 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330 + E E +L + I + + VDPPR G + + + + +A P I+Y+SC+P +L R Sbjct: 366 GKSEEEIPKLIEKGIAP---EVVVVDPPRKGCEKSLLHSIAEASPKTIVYVSCDPATLSR 422 Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364 DL ILS + + + D FP T H+E VL+ R Sbjct: 423 DLGILSELGYEVNEVQPVDMFPMTGHVETIVLIKR 457 >gi|312875412|ref|ZP_07735416.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners LEAF 2053A-b] gi|311089075|gb|EFQ47515.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners LEAF 2053A-b] Length = 450 Score = 83.2 bits (204), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 50/155 (32%), Positives = 76/155 (49%), Gaps = 15/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ Y G G L +A+H +VL VEI + +V+ A+ N N +NN + ++E Sbjct: 304 VIDAYSGIGTIGLSVAKHVKKVLGVEIVRDAVKDAKKNAILNGINNAEYFEGKAEELMPQ 363 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCR 330 E + IFVDPPR GL D + V P I+YISCNP ++ R Sbjct: 364 WANE------------GLKTDVIFVDPPRKGLTDTFIKAAVATSPKKIVYISCNPATMIR 411 Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364 DL + + + + + D FP T H+E VLL + Sbjct: 412 DLQVFQAAGYDFDCIDPVDMFPQTPHVETIVLLSK 446 >gi|300864706|ref|ZP_07109561.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Oscillatoria sp. PCC 6506] gi|300337289|emb|CBN54709.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Oscillatoria sp. PCC 6506] Length = 465 Score = 83.2 bits (204), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 58/186 (31%), Positives = 94/186 (50%), Gaps = 22/186 (11%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 ++F Q N+ +L+ V+A ++G+ L++ YCG G F+L LA+ + + +E+ Sbjct: 296 DTFFQVNSEAAETLLQ-VIADELHLEGNEVLVDAYCGIGTFTLPLAKFVSKAIGLELQGA 354 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302 +V+ A+ N NH+ NV + A+ N L +D+ + +DPPR Sbjct: 355 AVKQAQLNAELNHLTNVAF-------YVGAVE-----NLLPQLDVTP---DVVLLDPPRK 399 Query: 303 GLDDATV-GMVQAYPH-ILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTRHMEC 358 G D + +V P I YISC P +L RDL L + + ++R+ D FP T H+EC Sbjct: 400 GCDRTVLETLVATQPSRIAYISCKPSTLARDLKFLCQNGGYKLQRVQPADFFPQTPHVEC 459 Query: 359 GVLLVR 364 LVR Sbjct: 460 AAFLVR 465 >gi|294784025|ref|ZP_06749347.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Fusobacterium sp. 1_1_41FAA] gi|294479837|gb|EFG27616.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Fusobacterium sp. 1_1_41FAA] Length = 458 Score = 83.2 bits (204), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 87/387 (22%), Positives = 163/387 (42%), Gaps = 54/387 (13%) Query: 9 QYEQQLAEKVDRLRQMMLAFQ-VPNLQI---FRSEPIH-YRMR--AEFHIWHDGDDLYHI 61 +YE QL K + ++M +P+++I SE ++ YR + F ++ G+ + Sbjct: 93 KYESQLKYKKLMVEEVMRKIAGLPDIEISDVLASEDVYNYRNKIIEPFSVY--GNKIITG 150 Query: 62 MFDQQTKERMRIDYFMPGSLLINALMIEMMAT-----------IRLEPLLRAKLFQIDYL 110 F +++ E +D + S L N ++ E+ I + LLR + + + Sbjct: 151 FFKRKSHEVFEVDENILNSKLGNRIIKELKEILNKNKISVYNEITHKGLLRNVMIRTN-- 208 Query: 111 TSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDER 170 S ++ +V +I + + + RLR+ + K I + + KT + D+ Sbjct: 209 -SNNEAMLVLIINSNKITENIKNLLFRLREKIEEIK-SIYISLNSKKTNTVIG----DKN 262 Query: 171 LTVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNG 221 + + G I + SF Q N + + + I +++ Y G G Sbjct: 263 IFIYGEKSIKENLNGIEFHISPTSFFQINVKQAKRLYDIAINFFDNIDDKYIVDAYSGTG 322 Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFN 280 +++A+ +V A+EI K + E N + N++ + S KE + + Sbjct: 323 TIGMIMAKKAKKVYAIEIVKSASEDGEKTAKENGIENIEFINGSVEKELVNLINANK--- 379 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILSTT 338 R TI DPPR GL+ + + V ++YISCNP + RD+ + S Sbjct: 380 ----------RIDTIIFDPPRKGLEASIIDKVAELNLKEVVYISCNPSTFARDVKLFSEK 429 Query: 339 -HTIERLALFDQFPYTRHMECGVLLVR 364 + +++L D FP T H+EC L+ R Sbjct: 430 GYVLKKLQAVDMFPQTSHIECVGLIER 456 >gi|229015810|ref|ZP_04172786.1| Uncharacterized RNA methyltransferase [Bacillus cereus AH1273] gi|229022017|ref|ZP_04178573.1| Uncharacterized RNA methyltransferase [Bacillus cereus AH1272] gi|228739273|gb|EEL89713.1| Uncharacterized RNA methyltransferase [Bacillus cereus AH1272] gi|228745469|gb|EEL95495.1| Uncharacterized RNA methyltransferase [Bacillus cereus AH1273] Length = 459 Score = 83.2 bits (204), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 84/382 (21%), Positives = 168/382 (43%), Gaps = 44/382 (11%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQ------IFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63 Y++QL +K D + Q + +L+ + P HYR +++ + + + ++ Sbjct: 96 YKEQLNQKRDIVVQAFEKYMNNSLEEKIRPTLGMENPWHYRNKSQLQVGRKDEKVITGLY 155 Query: 64 DQQTKERMRIDYFM-------PGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTS-QSD 115 Q + + + I + M + ++ ++ ++ +I E + + I T+ Q+ Sbjct: 156 KQNSHQLIDISHCMIQHKATNEATKVVRRILEKLNVSIYNEKKQKGLVRTIVTRTAVQTG 215 Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175 + VTLI + + ++ + A K +Q + + I + D+ +AG Sbjct: 216 EVQVTLITTKEELPNKEQFIAEVQKQMPAVKSIMQNVNWRKTSVI-----FGDKTFKLAG 270 Query: 176 RTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSL 225 + +I + + +F Q N V + + A + G+ +++ YCG G L Sbjct: 271 KEVIQETLGDLSFELSARAFFQLNPEQTVVLYDEAKKAA-ALTGNEKIVDAYCGVGTIGL 329 Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285 LA V +++ ++E A+ N + N K ++++ +E Sbjct: 330 WLANDAAEVRGMDVIPEAIEDAKKNAKRHGFTNTKYEAGKAEQWLPKWVKE--------- 380 Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMV-QAYP-HILYISCNPDSLCRDLSILSTTHTIER 343 +R I VDPPR+G DD + + + P ++Y+SCNP SL RD++ L ++ +E Sbjct: 381 ---GWRPDVIVVDPPRTGCDDKLLETILKVKPKQVVYVSCNPSSLARDVNALMQSYEVEY 437 Query: 344 LALFDQFPYTRHMECGVLLVRK 365 + D FP+T H+E V LVRK Sbjct: 438 VQPVDMFPHTAHVENVVKLVRK 459 >gi|300814227|ref|ZP_07094503.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300511651|gb|EFK38875.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 441 Score = 83.2 bits (204), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 64/210 (30%), Positives = 101/210 (48%), Gaps = 24/210 (11%) Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYC 218 I RDYV E L L ++ SF Q N ++ + +QG +L+LYC Sbjct: 250 ILYGRDYVIEELL----GLKFKIGTFSFFQTNTYSAAYLYQLAFDMIDNLQGKKVLDLYC 305 Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278 G G S V A+ + VL VEI + +V AAR N N+++NV + + Sbjct: 306 GTGTISQVFAQKAESVLGVEIVEEAVNAARENAQYNNISNVDFIAGDVAKV--------- 356 Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDD--ATVGMVQAYP-HILYISCNPDSLCRDLS-I 334 + D+DI + I +DPPR G+++ A ++ P LYISCNP S +D+ Sbjct: 357 ---VNDLDIKA---DIIILDPPRVGINNPKALDKIIDFSPEEFLYISCNPISYVKDVKRF 410 Query: 335 LSTTHTIERLALFDQFPYTRHMECGVLLVR 364 + + ++++ DQFP T ++E LL + Sbjct: 411 IERGYKLKKIVGLDQFPRTVNLELISLLEK 440 >gi|330960598|gb|EGH60858.1| 23S rRNA m(5)U1939 methyltransferase [Pseudomonas syringae pv. maculicola str. ES4326] Length = 451 Score = 83.2 bits (204), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 56/182 (30%), Positives = 88/182 (48%), Gaps = 17/182 (9%) Query: 185 NSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 F Q NA +N M+E L G +++L+CG GNF+L LA V+AVE Sbjct: 279 GDFIQVNAAVNTAMIEQALQWLAPGPDERVMDLFCGLGNFALPLAGLAKEVVAVEGVATM 338 Query: 244 VEAARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302 VE A N +N ++NV+ + S+ T A D + F + +DPPR Sbjct: 339 VERAAANAMSNDLHNVQFFQADLSQPLTHA-------------DWAAEGFSAVLLDPPRD 385 Query: 303 GLDDATVGMVQAYP-HILYISCNPDSLCRD-LSILSTTHTIERLALFDQFPYTRHMECGV 360 G + + + +LY+SCNP +L RD + +++ + ++R + D FP T H+E Sbjct: 386 GAFEVVRQIRKTGARRLLYVSCNPATLARDTVELVNQGYRLKRAGILDMFPQTAHVEAMA 445 Query: 361 LL 362 L Sbjct: 446 LF 447 >gi|251783009|ref|YP_002997312.1| putative RNA methyltransferase [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242391639|dbj|BAH82098.1| putative RNA methyltransferase [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|323127818|gb|ADX25115.1| RNA methyltransferase, TrmA family protein [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 452 Score = 83.2 bits (204), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 94/383 (24%), Positives = 159/383 (41%), Gaps = 48/383 (12%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFR-------SEPIHYRMRAEFHIWHDGDDLYHIM 62 Y +QL K D +RQ + F+ + F +P HYR + +F + G + + Sbjct: 89 YPKQLDFKDDVIRQALKKFKPAGYEQFEIRHTKGMKKPDHYRAKLQFQLRSFGGSVKAGL 148 Query: 63 FDQQTKERMRIDYFMPGSLLINALMIEMMATI-------RLEPLLRAKLFQIDYL----T 111 F Q + + IDY L+ +AL E++ +I RL + I + Sbjct: 149 FSQGSHRLVPIDY----CLVQDALTQEIINSITQLVDKYRLPVYNERNIAGIRTVMVRKA 204 Query: 112 SQSDQAIVTLIYHR------LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD 165 SDQ + ++ + L+ D + AL+ + + I +T+I ++ Sbjct: 205 QASDQVQIIIVSSKEISLAGLIGDVTKAFPQIKMVALNINRSKSSDI-YGEETEILWGQE 263 Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAG-INVHMLEWVLAATKGIQGDLLELYCGNGNFS 224 + E + G L R +F Q N V E V A G+ +++ YCG G+ Sbjct: 264 AIHEEVLDYGFALSPR----AFYQLNPQQTEVLYGEVVKALDVGVTDHIIDAYCGVGSIG 319 Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284 A V ++I ++E A+ N A +N + +A + E + Sbjct: 320 FAFAGKVKSVRGMDIIPEAIEDAQKNAKAMGFDNA---------YYEAGKAEDIIPKWYK 370 Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTTHTIE 342 YR I VDPPR+GLD+ + + Y ++Y+SCN +L RDL L+T + + Sbjct: 371 ---QGYRADAIIVDPPRTGLDEKLLKTILRYQPKQMVYVSCNTSTLARDLIQLATVYDVH 427 Query: 343 RLALFDQFPYTRHMECGVLLVRK 365 + D FP+T E V L +K Sbjct: 428 YIQSVDMFPHTARTEAVVKLQKK 450 >gi|242238299|ref|YP_002986480.1| 23S rRNA 5-methyluridine methyltransferase [Dickeya dadantii Ech703] gi|242130356|gb|ACS84658.1| RNA methyltransferase, TrmA family [Dickeya dadantii Ech703] Length = 442 Score = 83.2 bits (204), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 59/186 (31%), Positives = 86/186 (46%), Gaps = 27/186 (14%) Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 F Q N +N M LEW+ +L+L+CG GNF+L LAR V+ VE Sbjct: 269 FIQVNDEVNQRMVAQALEWL---DPQPHERVLDLFCGMGNFTLPLARRAASVVGVEGVAA 325 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDP 299 VE R N N NV + +E D+ + F I +DP Sbjct: 326 LVEKGRENAERNAFGNVTFFHQNLEE---------------DVTRQPWAAQGFDKILLDP 370 Query: 300 PRSGLDDATVGMVQAYP-HILYISCNPDSLCRDLSI-LSTTHTIERLALFDQFPYTRHME 357 R+G +V+ P ++YISCNP +L RD + L+ + +E+LA+ D FP+T H+E Sbjct: 371 ARAGAPGVMSQIVKLTPGRVVYISCNPTTLARDSRVLLAAGYRLEKLAMLDMFPHTGHLE 430 Query: 358 CGVLLV 363 L + Sbjct: 431 SMALFL 436 >gi|145220570|ref|YP_001131279.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prosthecochloris vibrioformis DSM 265] gi|145206734|gb|ABP37777.1| 23S rRNA m(5)U-1939 methyltransferase [Chlorobium phaeovibrioides DSM 265] Length = 484 Score = 83.2 bits (204), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 62/200 (31%), Positives = 95/200 (47%), Gaps = 18/200 (9%) Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGN 220 L + E+L + L +R NSF Q N + + A + GD + +LYCG Sbjct: 283 LGSGTISEKLGL----LEFRISANSFFQTNTLQAEALYGRIQDACELRAGDRVYDLYCGT 338 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G +L LARH +R + +E+ + S++ AR N +N + N + K+ M R E Sbjct: 339 GTITLWLARHAERAIGLEVVESSIQDARSNAESNGIGNAYFFQTDLKDLGAMMERLEEHG 398 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGL-DDATVGMVQ-AYPHILYISCNPDSLCRD-LSILST 337 R D+ I DPPR+G+ A M++ I+Y+SCNP SL RD I Sbjct: 399 R-PDV---------IVTDPPRAGMHPKALETMLKLGARRIVYVSCNPASLARDGKEIAGA 448 Query: 338 THTIERLALFDQFPYTRHME 357 + + + D FP+T H+E Sbjct: 449 GYRLVSVEPVDMFPHTAHIE 468 >gi|260662798|ref|ZP_05863692.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus fermentum 28-3-CHN] gi|260552879|gb|EEX25878.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus fermentum 28-3-CHN] Length = 458 Score = 83.2 bits (204), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 53/165 (32%), Positives = 79/165 (47%), Gaps = 22/165 (13%) Query: 208 GIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265 G+ G +++ YCG G SL +A+H V VEI ++ A+ N A N + N V Sbjct: 305 GLDGSQTVIDAYCGIGTISLAVAKHAKHVYGVEIVPAAIADAKQNAANNGIENATFV--- 361 Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD----DATVGMVQAYPHILYI 321 + E +F + + + + VDPPR GLD +AT M A ++Y+ Sbjct: 362 ------VGKAEEQFAKWQ---AEGLKPDVVIVDPPRKGLDAQLIEATGKM--APQKVIYV 410 Query: 322 SCNPDSLCRDLSILSTT--HTIERLALFDQFPYTRHMECGVLLVR 364 SCNP +L RDL + H + + DQFP T H+E +L R Sbjct: 411 SCNPATLVRDLQRFAEQGYHVTKPIQPVDQFPQTTHVESVTVLER 455 >gi|24374962|ref|NP_719005.1| 23S rRNA 5-methyluridine methyltransferase [Shewanella oneidensis MR-1] gi|50401580|sp|Q8EBQ3|RUMA_SHEON RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|24349686|gb|AAN56449.1|AE015782_1 RNA methyltransferase, TrmA family [Shewanella oneidensis MR-1] Length = 449 Score = 83.2 bits (204), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 62/202 (30%), Positives = 99/202 (49%), Gaps = 24/202 (11%) Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGN 222 +D++ V +L + +F Q NA IN M L+W LA G + +L+L+CG GN Sbjct: 262 LDDKTDVQPVSLTF--TPGNFVQVNAQINKAMVAQALDW-LAPQPGER--ILDLFCGMGN 316 Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282 FSL LAR V+ VE V AR N AN ++N+ + + + E ++ Sbjct: 317 FSLPLARMGADVIGVEGVPEMVSQARENAVANGLSNLTFYH---GDLSADLSSEPWMGKI 373 Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDLSI-LSTTHT 340 + +DP R+G ++ + + P ++Y+SCNP SL RD ++ L + Sbjct: 374 DK----------LLLDPARAGAYESLQWLKKMKPRQVVYVSCNPASLARDSAVLLERGYK 423 Query: 341 IERLALFDQFPYTRHMECGVLL 362 +++L L D FP T H+E L Sbjct: 424 LQKLGLIDMFPQTHHIEAMALF 445 >gi|125977774|ref|XP_001352920.1| GA17699 [Drosophila pseudoobscura pseudoobscura] gi|54641671|gb|EAL30421.1| GA17699 [Drosophila pseudoobscura pseudoobscura] Length = 631 Score = 83.2 bits (204), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 49/167 (29%), Positives = 85/167 (50%), Gaps = 20/167 (11%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +L++ CG G +L A+H RVL VEI +++ A++N AN + N K ++ +F ++ Sbjct: 414 MLDICCGTGTIALAFAKHCKRVLGVEIVPDAIKDAQFNAEANGIKNCKFFTGNADDFIKS 473 Query: 273 MRREREFNRL--KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHI---LYISCNPDS 327 M RE + + K +D+ VDPPR+GL + ++ +++ I +Y+SCNP S Sbjct: 474 MVREAMYEQEPGKPVDL------IAVVDPPRAGLHNRSIAAIRSASAINRLVYVSCNPHS 527 Query: 328 LCRDLSILSTTHT---------IERLALFDQFPYTRHMECGVLLVRK 365 R+ L+ + + D FP+T H E +L R+ Sbjct: 528 AKRNFIELARPESKHYKGEPFYPKSAVAVDMFPHTTHTELVILFERE 574 >gi|315641084|ref|ZP_07896163.1| 23S rRNA (uracil-5-)-methyltransferase [Enterococcus italicus DSM 15952] gi|315483092|gb|EFU73609.1| 23S rRNA (uracil-5-)-methyltransferase [Enterococcus italicus DSM 15952] Length = 465 Score = 83.2 bits (204), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 62/220 (28%), Positives = 104/220 (47%), Gaps = 26/220 (11%) Query: 151 LIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ 210 ++G N+ + + Y++++L G+T +R SF Q N + + + + + Sbjct: 263 IMGPTNR--VLYGKSYIEDQLL--GKT--FRISAQSFYQVNTEQAEKLYQVAMDFAQLSK 316 Query: 211 GD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269 D +++ Y G G L LA D V +EI +V+ A+ N A N + N + +++ Sbjct: 317 NDTVVDAYSGIGTIGLSLADKVDHVYGMEIVAEAVKDAQTNAAINGITNATYLEGKAEKI 376 Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD----DATVGMVQAYPHILYISCNP 325 RE + +FVDPPR GLD DAT M ++YISCNP Sbjct: 377 MHQWAREE------------VQPTVVFVDPPRKGLDASFIDATCEMQPE--RVVYISCNP 422 Query: 326 DSLCRDLSILSTT-HTIERLALFDQFPYTRHMECGVLLVR 364 ++ RD+ + + + +E++ D FP T H+EC LL R Sbjct: 423 ATMARDVKLFAEKGYQLEKVQPVDLFPQTVHVECVGLLTR 462 >gi|226310296|ref|YP_002770190.1| 23S rRNA (uracil-5-)-methyltransferase [Brevibacillus brevis NBRC 100599] gi|226093244|dbj|BAH41686.1| probable 23S rRNA (uracil-5-)-methyltransferase [Brevibacillus brevis NBRC 100599] Length = 485 Score = 83.2 bits (204), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 48/154 (31%), Positives = 75/154 (48%), Gaps = 14/154 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G SL LA+ V VEI ++ A N N V N ++ A Sbjct: 334 VIDAYCGIGTISLFLAQKSKHVYGVEIVPEAIADANRNAQLNGVENATFEAGPAEVVIPA 393 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYPH-ILYISCNPDSLCR 330 + + R I VDPPR G D+A + + + P ++Y+SCNP +L R Sbjct: 394 WKEK------------GIRADVIVVDPPRKGCDEALLTTILEMQPERVVYVSCNPSTLAR 441 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 DL +L+ + ++ + D FP+T H+E +LVR Sbjct: 442 DLKVLAERYEVKEVQPVDMFPHTGHVESVAVLVR 475 >gi|213971908|ref|ZP_03400008.1| RNA methyltransferase, TrmA family [Pseudomonas syringae pv. tomato T1] gi|301384478|ref|ZP_07232896.1| 23S rRNA 5-methyluridine methyltransferase [Pseudomonas syringae pv. tomato Max13] gi|302060512|ref|ZP_07252053.1| 23S rRNA 5-methyluridine methyltransferase [Pseudomonas syringae pv. tomato K40] gi|302132004|ref|ZP_07257994.1| 23S rRNA 5-methyluridine methyltransferase [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213923333|gb|EEB56928.1| RNA methyltransferase, TrmA family [Pseudomonas syringae pv. tomato T1] Length = 451 Score = 83.2 bits (204), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 56/184 (30%), Positives = 88/184 (47%), Gaps = 21/184 (11%) Query: 185 NSFTQPNAGINVHMLE----WVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240 F Q NA +N M+E W+ A +++L+CG GNF+L LA V+AVE Sbjct: 279 GDFIQVNAAVNTAMIEQALHWLAPAA---DERVMDLFCGLGNFALPLASLAKEVVAVEGV 335 Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300 VE A N +N ++N VR + +Q L +D + F + +DPP Sbjct: 336 ATMVERAAVNAMSNDLHN---VRFFQADLSQP---------LTHVDWAAEGFSAVLLDPP 383 Query: 301 RSGLDDATVGMVQAYPH-ILYISCNPDSLCRD-LSILSTTHTIERLALFDQFPYTRHMEC 358 R G + + + +LY+SCNP +L RD + ++ + ++R + D FP T H+E Sbjct: 384 RDGAFEVVRQIRKTGAQRLLYVSCNPATLARDTVELVKQGYRLKRAGILDMFPQTAHVEA 443 Query: 359 GVLL 362 L Sbjct: 444 MALF 447 >gi|149197270|ref|ZP_01874322.1| RNA methyltransferase-like protein [Lentisphaera araneosa HTCC2155] gi|149139816|gb|EDM28217.1| RNA methyltransferase-like protein [Lentisphaera araneosa HTCC2155] Length = 409 Score = 83.2 bits (204), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 78/264 (29%), Positives = 114/264 (43%), Gaps = 42/264 (15%) Query: 111 TSQSDQAIVTLIYHRLLDDA-----WRECAIRLRDAL-HARKYQIQLIGRANKTKICLDR 164 TS +D+A + I +LLD+ W RL D+L RK+ G+ T+ L R Sbjct: 177 TSSADEAKLEQIAQKLLDEGVQSVYWNVNDNRLDDSLGECRKF----WGQEFITENLLGR 232 Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNF 223 D++ LT F Q N + V K Q + +LY G Sbjct: 233 DFILGPLT--------------FFQANHDVASAAYTSVRNFIKECQPKKIHDLYSGTCTM 278 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 ++ D V AVE +V A N+ AN + NVK + EF + E EF+ L Sbjct: 279 PVIFGDLVDSVTAVENFPENVRMAEKNLKANGIENVKFIEQDVAEFLKQSDLEMEFSVL- 337 Query: 284 DIDIHSYRFKTIFVDPPRSGL-DDATVGMVQAYP-HILYISCNPDSLCRDLSILSTTHTI 341 +PPR G+ + A +++ P ++ Y+SC+P SL DL IL + Sbjct: 338 --------------NPPRKGMHEQALRRILELAPDNLAYLSCSPRSLLEDLGILFREYKP 383 Query: 342 ERLALFDQFPYTRHMECGVLLVRK 365 ++ LFD FP T H E VLL +K Sbjct: 384 LKIQLFDMFPQTEHFETLVLLTKK 407 >gi|184155945|ref|YP_001844285.1| RNA methyltransferase [Lactobacillus fermentum IFO 3956] gi|183227289|dbj|BAG27805.1| RNA methyltransferase [Lactobacillus fermentum IFO 3956] Length = 458 Score = 82.8 bits (203), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 53/165 (32%), Positives = 79/165 (47%), Gaps = 22/165 (13%) Query: 208 GIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265 G+ G +++ YCG G SL +A+H V VEI ++ A+ N A N + N V Sbjct: 305 GLDGSQTVIDAYCGIGTISLAVAKHAKHVYGVEIVPAAIADAKQNAANNGIENATFV--- 361 Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD----DATVGMVQAYPHILYI 321 + E +F + + + + VDPPR GLD +AT M A ++Y+ Sbjct: 362 ------VGKAEEQFAKWQ---AEGLKPDVVIVDPPRKGLDAQLIEATGKM--APQKVIYV 410 Query: 322 SCNPDSLCRDLSILSTT--HTIERLALFDQFPYTRHMECGVLLVR 364 SCNP +L RDL + H + + DQFP T H+E +L R Sbjct: 411 SCNPATLVRDLQRFAEQGYHVTKPIQPVDQFPQTTHVESVTVLER 455 >gi|306820250|ref|ZP_07453891.1| 23S rRNA (uracil-5-)-methyltransferase [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304551704|gb|EFM39654.1| 23S rRNA (uracil-5-)-methyltransferase [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 452 Score = 82.8 bits (203), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 53/183 (28%), Positives = 84/183 (45%), Gaps = 18/183 (9%) Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 SF Q N + + + G + + +LY G G + L+ +V+ +EI + +VE Sbjct: 283 SFFQTNTKGAETLYKTAMEMIDGEKDIIFDLYSGTGTIGISLSARAKKVIGIEIVEEAVE 342 Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD 305 AR N AN+V NV+ + KE + + I +DPPR+G++ Sbjct: 343 MARENAQANNVKNVEFIAGDVKEEVSKLTNSPQL---------------IILDPPRAGIN 387 Query: 306 DATVGMVQAY--PHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLL 362 + + + ILYISCNP L +DL +L + I ++ D F T H E VL+ Sbjct: 388 PKALKDIIGFNSKQILYISCNPKMLVQDLKVLKEAGYEIAKVKGVDMFANTYHCETVVLM 447 Query: 363 VRK 365 RK Sbjct: 448 SRK 450 >gi|227515533|ref|ZP_03945582.1| TrmA family tRNA (uracil-5-)-methyltransferase [Lactobacillus fermentum ATCC 14931] gi|227086146|gb|EEI21458.1| TrmA family tRNA (uracil-5-)-methyltransferase [Lactobacillus fermentum ATCC 14931] Length = 458 Score = 82.8 bits (203), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 53/165 (32%), Positives = 79/165 (47%), Gaps = 22/165 (13%) Query: 208 GIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265 G+ G +++ YCG G SL +A+H V VEI ++ A+ N A N + N V Sbjct: 305 GLDGSKTVIDAYCGIGTISLAVAKHAKHVYGVEIVPAAIADAKQNAANNGIENATFV--- 361 Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD----DATVGMVQAYPHILYI 321 + E +F + + + + VDPPR GLD +AT M A ++Y+ Sbjct: 362 ------VGKAEEQFAKWQ---AEGLKPDVVIVDPPRKGLDAQLIEATGKM--APQKVIYV 410 Query: 322 SCNPDSLCRDLSILSTT--HTIERLALFDQFPYTRHMECGVLLVR 364 SCNP +L RDL + H + + DQFP T H+E +L R Sbjct: 411 SCNPATLVRDLQRFAEQGYHVTKPIQPVDQFPQTTHVESVTVLER 455 >gi|320323402|gb|EFW79490.1| 23S rRNA 5-methyluridine methyltransferase [Pseudomonas syringae pv. glycinea str. B076] gi|320327599|gb|EFW83611.1| 23S rRNA 5-methyluridine methyltransferase [Pseudomonas syringae pv. glycinea str. race 4] Length = 451 Score = 82.8 bits (203), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 61/202 (30%), Positives = 96/202 (47%), Gaps = 19/202 (9%) Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNF 223 D + RL L +R F Q NA +N M+E L + + +++L+CG GNF Sbjct: 261 DTLGYRLEPWNLQLAWR--PGDFIQVNAAVNTAMIEQALQWLAPAKDERVMDLFCGLGNF 318 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNRL 282 +L LA V+AVE VE A N +N ++NV+ + S+ T A Sbjct: 319 ALPLAGLAREVVAVEGVATMVERAAVNAMSNDLHNVQFFQADLSQPLTHA---------- 368 Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP-HILYISCNPDSLCRD-LSILSTTHT 340 D + F + +DPPR G + + + +LY+SCNP +L RD + ++S + Sbjct: 369 ---DWAAEGFSAVLLDPPRDGAFEVVRQIRKTGARRLLYVSCNPATLARDTVELISQGYR 425 Query: 341 IERLALFDQFPYTRHMECGVLL 362 ++R + D FP T H+E L Sbjct: 426 LKRAGILDMFPQTAHVEAMALF 447 >gi|255507354|ref|ZP_05382993.1| rRNA methyltransferase [Chlamydia trachomatis D(s)2923] gi|289525786|emb|CBJ15267.1| rRNA methyltransferase [Chlamydia trachomatis Sweden2] gi|296435362|gb|ADH17540.1| rRNA methyltransferase [Chlamydia trachomatis E/150] gi|296439079|gb|ADH21232.1| rRNA methyltransferase [Chlamydia trachomatis E/11023] Length = 396 Score = 82.8 bits (203), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 70/255 (27%), Positives = 118/255 (46%), Gaps = 43/255 (16%) Query: 124 HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQI 183 LLD +I + L AR +T ++ ++L++ GR+ ++ Sbjct: 169 QSLLDSGLPITSIFWEEKLSARNSPTTF-----RTTHLYGAPFLKQQLSIDGRSSLFHIR 223 Query: 184 ENSFTQPNAGINVHMLEWVLAATKGIQG-----------DLLELYCGNGNFSLVLARHFD 232 SF QP + L A K IQ LL+LYCG G ++LA + Sbjct: 224 PRSFFQPQS----------LQAEKIIQTIKEFIDPCGEETLLDLYCGAGTIGILLAPYVK 273 Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292 +++ VE+ +V +A+ NI N V ++++ +K+F + R E L DI Sbjct: 274 KIIGVELVPDAVASAQENIQLNSV-DMEVFLEDAKQFCK--RNE----NLPSPDI----- 321 Query: 293 KTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQ 349 + +DPPR G+ + + + A I+Y+SCNP + ++ S+L + + R+ DQ Sbjct: 322 --VVIDPPRCGMQNKALKYLLRMAPKKIVYVSCNPLTQIQECSVLVEQGYQLRRMQPIDQ 379 Query: 350 FPYTRHMECGVLLVR 364 FP+T H+E VLL R Sbjct: 380 FPHTNHLENIVLLER 394 >gi|165871358|ref|ZP_02216006.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. A0488] gi|170708771|ref|ZP_02899208.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. A0389] gi|164712842|gb|EDR18371.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. A0488] gi|170126350|gb|EDS95240.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. A0389] Length = 454 Score = 82.8 bits (203), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 48/149 (32%), Positives = 79/149 (53%), Gaps = 15/149 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G+ SL LA+ +V VEI ++E A+ N A N++ N + ++ Sbjct: 311 VIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDAKRNAALNNMTNAEFGVGEAEVVIPK 370 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330 +E + D T+ VDPPR G D+A + ++ P ++Y+SCNP +L R Sbjct: 371 WYKE---GVIAD---------TMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLAR 418 Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMEC 358 DL +L + + + L D FP+T H+EC Sbjct: 419 DLKVLEEGGYKTQEVQLVDMFPHTTHVEC 447 >gi|297528755|ref|YP_003670030.1| RNA methyltransferase, TrmA family [Geobacillus sp. C56-T3] gi|297252007|gb|ADI25453.1| RNA methyltransferase, TrmA family [Geobacillus sp. C56-T3] Length = 457 Score = 82.8 bits (203), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 51/150 (34%), Positives = 73/150 (48%), Gaps = 17/150 (11%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G SL LAR V VEI ++E A+ N N + NV ++++ Sbjct: 314 VIDAYCGIGTISLFLARKAKHVYGVEIVPEAIEDAKRNAKPNGIQNVTFEVGAAEDVIPR 373 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330 E R + VDPPR G D + + + A P ++Y+SCNP +L R Sbjct: 374 WYEE------------GIRADCLVVDPPRKGCDASLLETIIAMKPPRVVYVSCNPATLAR 421 Query: 331 DLSIL--STTHTIERLALFDQFPYTRHMEC 358 DL IL TIE + D FP+T H+EC Sbjct: 422 DLRILEDGGYETIE-VQPVDMFPHTAHVEC 450 >gi|221488294|gb|EEE26508.1| RNA methyltransferase, putative [Toxoplasma gondii GT1] Length = 426 Score = 82.8 bits (203), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 50/157 (31%), Positives = 80/157 (50%), Gaps = 16/157 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 LL+ YCG G F+L FD V+ ++ S+E A+YN N + +K F ++ Sbjct: 240 LLDCYCGVGLFALACHDDFDEVVGFDVCSSSIELAKYNAQFNSKWRARFEVSDAKNFFES 299 Query: 273 MRREREFNRLKDIDIHSYRFKT---IFVDPPRSGLD-DATVGMVQAYPH-ILYISCNPDS 327 HS K+ + +DPPR G D + + +++ P I+YISC+P + Sbjct: 300 FSAG-----------HSSSDKSRLFVVLDPPRKGCDSEFLLSLLKLKPERIVYISCHPAT 348 Query: 328 LCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 RDL + +T++ + FD FP+TRH+EC + L R Sbjct: 349 QARDLKAVLPLYTVKNIQPFDMFPHTRHIECVITLER 385 >gi|254423658|ref|ZP_05037376.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Synechococcus sp. PCC 7335] gi|196191147|gb|EDX86111.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Synechococcus sp. PCC 7335] Length = 483 Score = 82.8 bits (203), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 55/160 (34%), Positives = 82/160 (51%), Gaps = 21/160 (13%) Query: 209 IQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266 + GD +++ YCG G F+L LAR + + +E + SV A+ N A N + NV Sbjct: 337 LTGDEVIVDAYCGVGTFTLPLARQVKQCIGLESSTESVVQAQENAALNGIENV------- 389 Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCN 324 R L D+D+ + + +DPPR G + A + +V P I+Y+SCN Sbjct: 390 -----GFRIGDVAALLPDLDV---KPDILLLDPPRKGCELAVLESIVAIKPKRIVYVSCN 441 Query: 325 PDSLCRDLSILSTT--HTIERLALFDQFPYTRHMECGVLL 362 P +L RDL +LS T + + R+ D FP T H+EC V L Sbjct: 442 PATLARDLRVLSETGGYRVTRVQPADFFPQTAHVECAVFL 481 >gi|153940444|ref|YP_001392724.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum F str. Langeland] gi|152936340|gb|ABS41838.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum F str. Langeland] gi|295320705|gb|ADG01083.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum F str. 230613] Length = 461 Score = 82.8 bits (203), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 48/156 (30%), Positives = 77/156 (49%), Gaps = 15/156 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + + YCG G SL L++ +V VEI K +++ A+ N N ++N + S+E Sbjct: 316 VFDAYCGTGTISLFLSQKAKKVYGVEIIKEAIDNAKDNAKENKIDNAEFFVGKSEEV--- 372 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330 + D+ + + VDPPR G + + + A I+Y+SC+P +L R Sbjct: 373 ---------IPDLIDKGIKADVVVVDPPRKGCEKTLLEAIAATKPKRIVYVSCDPGTLAR 423 Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVRK 365 DL IL+ + + + D FP T H+E VLL RK Sbjct: 424 DLGILNELGYETKEVQPVDMFPQTSHVETCVLLQRK 459 >gi|213421252|ref|ZP_03354318.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 170 Score = 82.8 bits (203), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 57/187 (30%), Positives = 90/187 (48%), Gaps = 27/187 (14%) Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 F Q N +N M LEW+ + +L+L+CG GNF+L LA V+ VE + Sbjct: 1 FIQVNEAVNQQMVARALEWLDVRA---EDRVLDLFCGMGNFTLPLATRAASVVGVEGVQA 57 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDP 299 VE R N N ++NV + +E D+ + F + +DP Sbjct: 58 LVEKGRENAIRNGLHNVTFFHENLEE---------------DVTKQPWAKNGFDKVLLDP 102 Query: 300 PRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHME 357 R+G +++ P I+Y+SCNP +L RD ++++ + + RLA+ D FP+T H+E Sbjct: 103 ARAGATGVMRHIIKLKPIRIVYVSCNPATLARDSEALVNAGYEVTRLAMLDMFPHTGHLE 162 Query: 358 CGVLLVR 364 VL R Sbjct: 163 SMVLFER 169 >gi|163816191|ref|ZP_02207559.1| hypothetical protein COPEUT_02375 [Coprococcus eutactus ATCC 27759] gi|158448611|gb|EDP25606.1| hypothetical protein COPEUT_02375 [Coprococcus eutactus ATCC 27759] Length = 495 Score = 82.8 bits (203), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 48/161 (29%), Positives = 79/161 (49%), Gaps = 15/161 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G + + +V+ VE+ + +V AR N+ N + NV I + F Sbjct: 342 VIDAYCGIGTIGIAASDRAKKVIGVELNEAAVHDARVNVKMNKIQNVDIYSNDAGRF--- 398 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSG-LDDATVGMVQAYPH-ILYISCNPDSLCR 330 + D+ +F+DPPRSG ++ ++ P ++YISC P+SL R Sbjct: 399 ---------MVDVADEGDSIDVVFMDPPRSGSTEEFMSSVITLGPKRVVYISCGPESLAR 449 Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVRKPSGWH 370 DL ++ + + R+ D FP TR +E VLL R +G H Sbjct: 450 DLKYMTKHGYQVIRMTPVDMFPLTRGVETVVLLTRAGAGQH 490 >gi|30260503|ref|NP_842880.1| RNA methyltransferase [Bacillus anthracis str. Ames] gi|47525600|ref|YP_016949.1| RNA methyltransferase [Bacillus anthracis str. 'Ames Ancestor'] gi|49183346|ref|YP_026598.1| RNA methyltransferase [Bacillus anthracis str. Sterne] gi|65317755|ref|ZP_00390714.1| COG2265: SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Bacillus anthracis str. A2012] gi|167634215|ref|ZP_02392537.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. A0442] gi|167640112|ref|ZP_02398379.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. A0193] gi|170688363|ref|ZP_02879572.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. A0465] gi|177653642|ref|ZP_02935781.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. A0174] gi|190567579|ref|ZP_03020492.1| RNA methyltransferase, TrmA family [Bacillus anthracis Tsiankovskii-I] gi|227812998|ref|YP_002813007.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. CDC 684] gi|229601940|ref|YP_002864948.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. A0248] gi|254686717|ref|ZP_05150575.1| RNA methyltransferase, TrmA family protein [Bacillus anthracis str. CNEVA-9066] gi|254724793|ref|ZP_05186576.1| RNA methyltransferase, TrmA family protein [Bacillus anthracis str. A1055] gi|254742321|ref|ZP_05200007.1| RNA methyltransferase, TrmA family protein [Bacillus anthracis str. Kruger B] gi|254756096|ref|ZP_05208125.1| RNA methyltransferase, TrmA family protein [Bacillus anthracis str. Vollum] gi|254761914|ref|ZP_05213763.1| RNA methyltransferase, TrmA family protein [Bacillus anthracis str. Australia 94] gi|50401540|sp|Q81ZD6|Y333_BACAN RecName: Full=Uncharacterized RNA methyltransferase BA_0333/GBAA_0333/BAS0318 gi|30253871|gb|AAP24366.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. Ames] gi|47500748|gb|AAT29424.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. 'Ames Ancestor'] gi|49177273|gb|AAT52649.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. Sterne] gi|167511923|gb|EDR87302.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. A0193] gi|167530529|gb|EDR93244.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. A0442] gi|170667695|gb|EDT18449.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. A0465] gi|172081222|gb|EDT66297.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. A0174] gi|190561366|gb|EDV15338.1| RNA methyltransferase, TrmA family [Bacillus anthracis Tsiankovskii-I] gi|227007157|gb|ACP16900.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. CDC 684] gi|229266348|gb|ACQ47985.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. A0248] Length = 458 Score = 82.8 bits (203), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 48/149 (32%), Positives = 79/149 (53%), Gaps = 15/149 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G+ SL LA+ +V VEI ++E A+ N A N++ N + ++ Sbjct: 315 VIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDAKRNAALNNMTNAEFGVGEAEVVIPK 374 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330 +E + D T+ VDPPR G D+A + ++ P ++Y+SCNP +L R Sbjct: 375 WYKE---GVIAD---------TMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLAR 422 Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMEC 358 DL +L + + + L D FP+T H+EC Sbjct: 423 DLKVLEEGGYKTQEVQLVDMFPHTTHVEC 451 >gi|15643851|ref|NP_228900.1| RNA methyltransferase, putative [Thermotoga maritima MSB8] gi|50401706|sp|Q9X0H9|Y1094_THEMA RecName: Full=Uncharacterized RNA methyltransferase TM_1094 gi|4981638|gb|AAD36170.1|AE001768_19 RNA methyltransferase, putative [Thermotoga maritima MSB8] Length = 439 Score = 82.8 bits (203), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 58/185 (31%), Positives = 95/185 (51%), Gaps = 21/185 (11%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 +F Q N I +++ V + +QG+ +L+LY G G FS+ + RV++VE ++ Sbjct: 268 TAFFQSNYSITSKLIDHVYRE-QALQGNEVVLDLYAGIGTFSVRTSFSAARVISVESSRV 326 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302 +V+A + N N N++ V +F LK+ +S R I +DPPRS Sbjct: 327 AVKAGKANANINSRKNIEYVEQDVLDF------------LKN---YSGRADRIILDPPRS 371 Query: 303 GLDDATVGMVQ--AYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECG 359 G + + + I+Y+SC+P +L RDL +L ++I R+ FD FP T H+E Sbjct: 372 GAGPEVMKEIARLSPERIVYVSCDPSTLVRDLKVLVENGYSIVRVKPFDMFPQTYHVETA 431 Query: 360 VLLVR 364 V LV+ Sbjct: 432 VTLVK 436 >gi|254739058|ref|ZP_05196760.1| RNA methyltransferase, TrmA family protein [Bacillus anthracis str. Western North America USA6153] Length = 404 Score = 82.8 bits (203), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 48/149 (32%), Positives = 79/149 (53%), Gaps = 15/149 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G+ SL LA+ +V VEI ++E A+ N A N++ N + ++ Sbjct: 261 VIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDAKRNAALNNMTNAEFGVGEAEVVIPK 320 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330 +E + D T+ VDPPR G D+A + ++ P ++Y+SCNP +L R Sbjct: 321 WYKE---GVIAD---------TMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLAR 368 Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMEC 358 DL +L + + + L D FP+T H+EC Sbjct: 369 DLKVLEEGGYKTQEVQLVDMFPHTTHVEC 397 >gi|225174261|ref|ZP_03728260.1| RNA methyltransferase, TrmA family [Dethiobacter alkaliphilus AHT 1] gi|225170046|gb|EEG78841.1| RNA methyltransferase, TrmA family [Dethiobacter alkaliphilus AHT 1] Length = 455 Score = 82.8 bits (203), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 53/157 (33%), Positives = 79/157 (50%), Gaps = 17/157 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + +LYCG G SL LAR +V+ VE + +V AR N N++ N + +++ Sbjct: 312 VFDLYCGIGTISLFLARKAAKVVGVESVEAAVHDARENANVNNIKNAEFHTGTAETVVPR 371 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY-PH-ILYISCNPDSLCR 330 + ++ Y + VDPPR G D+ + + A P I+Y+SCNP +L R Sbjct: 372 LFKQ------------GYHADVVVVDPPRKGCDEKLLATIAAMRPQRIVYVSCNPATLAR 419 Query: 331 DLSILSTT--HTIERLALFDQFPYTRHMECGVLLVRK 365 DL L + IE + D FP+T H+E VLL RK Sbjct: 420 DLKYLQQNGYNPIEAQPV-DMFPHTSHVETVVLLERK 455 >gi|313904339|ref|ZP_07837717.1| RNA methyltransferase, TrmA family [Eubacterium cellulosolvens 6] gi|313470889|gb|EFR66213.1| RNA methyltransferase, TrmA family [Eubacterium cellulosolvens 6] Length = 437 Score = 82.8 bits (203), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 93/389 (23%), Positives = 159/389 (40%), Gaps = 63/389 (16%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYR--MRAEFHIWHDGDDLYHIMFDQQT 67 YE+QLA K ++R +M P HYR + A F DG + I +++ T Sbjct: 75 YEEQLAIKEKQVRCLMEGIAKVRPVTGMENPYHYRNKVNAAFQRKRDGKIVSGI-YEEGT 133 Query: 68 KERMRIDYFMPGSLLINALMIEMMATIR-LEPLLRAKLFQIDYLTS-----------QSD 115 + + L+ + E++ TIR L + +++ D+ + S Sbjct: 134 HNVIPVS----SCLIEDQKADEIIGTIRRLALSFKVRIYDEDHGSGLLRHVMIRRGHVSG 189 Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175 Q +V L+ + + LR A H + L +T + L +T+ G Sbjct: 190 QILVILVVASPVFPSKNNFVKALR-AAHPEITSVVLNVNDKQTSMVLG----SRNITLYG 244 Query: 176 RTLI--------YRQIENSFTQPNA-------GINVHMLEWVLAATKGIQGDLLELYCGN 220 + I +R +SF Q N+ G + + E T + + YCG Sbjct: 245 KGYIEDILCGCRFRISPSSFYQINSVQTEKLYGKAIELAELTGEET------VFDAYCGI 298 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G + + RV+ VE+ K +V A N N + N++ + F Sbjct: 299 GTIGITASAGAGRVIGVELNKDAVRDAAINAKLNDIPNIRFYADDAGRF----------- 347 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY----PHILYISCNPDSLCRDLSILS 336 L ++ + +F+DPPRSG + V M A+ I+Y+SC+P+++ RDL L Sbjct: 348 -LTEMAARGEKADVLFMDPPRSGSTE--VFMKAAFEMEPSRIVYVSCDPETMARDLRYLR 404 Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVRK 365 + + + FD FP+TR +EC +L RK Sbjct: 405 KNYNVGEIWPFDMFPWTRSIECVTVLKRK 433 >gi|322807691|emb|CBZ05266.1| RNA methyltransferase, TrmA family [Clostridium botulinum H04402 065] Length = 467 Score = 82.8 bits (203), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 47/155 (30%), Positives = 77/155 (49%), Gaps = 15/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + + YCG G SL L++ +V AVEI K +++ A+ N N ++N + S+E Sbjct: 316 VFDAYCGTGTISLFLSQKAKKVYAVEIIKEAIDNAKDNAKENKIDNAEFFVGKSEEV--- 372 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330 + D+ + + VDPPR G + + + A I Y+SC+P +L R Sbjct: 373 ---------IPDLIDKGIKADVVVVDPPRKGCEKTLLEAIAATKPKRIAYVSCDPGTLAR 423 Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364 DL IL+ + +++ D FP T H+EC V + R Sbjct: 424 DLGILNELGYETKKVQPVDMFPQTSHVECVVRIER 458 >gi|195171542|ref|XP_002026564.1| GL21973 [Drosophila persimilis] gi|194111480|gb|EDW33523.1| GL21973 [Drosophila persimilis] Length = 296 Score = 82.8 bits (203), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 52/178 (29%), Positives = 91/178 (51%), Gaps = 22/178 (12%) Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261 ++A TK +L++ CG G +L A+H RVL VEI +++ A++N AN + N K Sbjct: 70 LVAPTKNTT--MLDICCGTGTIALAFAKHCKRVLGVEIVPDAIKDAQFNAEANGIKNCKF 127 Query: 262 VRMSSKEFTQAMRREREFNRL--KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHI- 318 ++ +F ++M RE + + K +D+ + VDPPR+GL + ++ +++ I Sbjct: 128 FTGNADDFIKSMVREAMYEQEPGKPVDLIA------VVDPPRAGLHNRSIAAIRSASAIN 181 Query: 319 --LYISCNPDSLCRDLSILSTTHT---------IERLALFDQFPYTRHMECGVLLVRK 365 +Y+SCNP S R+ L+ + + D FP+T H E +L R+ Sbjct: 182 RLVYVSCNPHSAKRNFIELARPESKHYKGEPFYPKSAVAVDMFPHTTHTELVILFERE 239 >gi|253578497|ref|ZP_04855769.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251850815|gb|EES78773.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 386 Score = 82.8 bits (203), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 92/380 (24%), Positives = 167/380 (43%), Gaps = 44/380 (11%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIM---FDQQ 66 Y++QLA K R+++++ F I +P +YR + H D D +I+ ++ + Sbjct: 24 YKEQLAAKQKRMKKLLGKFANVKPIIGMDDPFYYRNKV--HAVFDRDKKGNIICGTYEAK 81 Query: 67 TKERMRIDYFMPGSLLINALMI---EMMATIRLEP--------LLRAKLFQIDYLTSQSD 115 T + + I+ M + ++ +M+ + R++ LLR L + + T D Sbjct: 82 THKVVPIEECMIEDKISQEIIRTIRDMLKSFRIKTYDEDTGYGLLRHVLVRRGFFT---D 138 Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDE-----R 170 + +V ++ + + LR + + + + +RD V R Sbjct: 139 EIMVVIVIGSPIFPSKNNFVKALRKKYPQITTVVLNVNDKKTSMVLGERDIVIYGKGYIR 198 Query: 171 LTVAGRTLIYRQIENSFTQPNAGINVHML--EWVLAATKGIQGDLLELYCGNGNFSLVLA 228 T+ G T +R SF Q N + +L + A G + +++ YCG G LV A Sbjct: 199 DTLCGCT--FRISPQSFYQVNP-VQTEILYKTAIEYAGLGRKETVIDAYCGIGTIGLVAA 255 Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288 + V+ VE+ +V AR N N + N + + + EF + M E H Sbjct: 256 KRAKNVIGVELNPDAVRDARINAKENKITNARFYQGDAGEFMENMAENGE---------H 306 Query: 289 SYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCRDLSILST-THTIERLA 345 + +F+DPPR+G D + +++ P I+YISC P++L RDL L+ + + ++ Sbjct: 307 A---DVVFMDPPRTGSDKKFMSSVIKLNPSRIVYISCGPETLARDLEYLTKHGYDVRKIQ 363 Query: 346 LFDQFPYTRHMECGVLLVRK 365 D F +T H E LL +K Sbjct: 364 PVDMFSFTDHCENICLLTKK 383 >gi|308801098|ref|XP_003075330.1| COG2265: SAM-dependent methyltransferases related to tRNA (ISS) [Ostreococcus tauri] gi|116061884|emb|CAL52602.1| COG2265: SAM-dependent methyltransferases related to tRNA (ISS) [Ostreococcus tauri] Length = 363 Score = 82.8 bits (203), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 83/296 (28%), Positives = 142/296 (47%), Gaps = 40/296 (13%) Query: 100 LRAKLFQIDYLTSQSDQAIVTLIYH---RLLDDAWRECA--IRLRDALHARKYQIQLIGR 154 +R + ++ L+ + IV H L +D WR A +R RD + + ++ + Sbjct: 76 VRESIRAVNVLSIRDGTEIVLASTHARETLDEDEWRTFAETVRARD-----ERVVGVVCK 130 Query: 155 ANKTKICL--DRDYVDERLTVAG-RTLIYRQIENSFTQPNAGIN----VHMLEWVLAATK 207 K L DRDYV E++ + RT+ E SF+ PN + +H+ ++ A T+ Sbjct: 131 RKKMPNALVGDRDYVVEKMGLPNERTVRLIHREGSFSNPNGDVAEQTAIHLCDYFDALTR 190 Query: 208 GIQGD---LLELYCGNGNFSLVLARHFDR--VLAVEIAKPSVEAARYNIAANHV--NNVK 260 + + +ELY G GN ++ +A +F + AVE+ VEAAR N A N + N + Sbjct: 191 SSEDEEYTFVELYAGCGNHTVCVAPYFAKRGAYAVEVDANLVEAARENFALNGLSENFAR 250 Query: 261 IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHI 318 +V M ++E+ ++ + I + R + VDPPR+GLD T+ V A+ + Sbjct: 251 VVCMPAEEWVRS-------EDARAISGEAGRV-ALLVDPPRAGLDARTLDFVTASAFDVV 302 Query: 319 LYISCNPDSLCRDL-----SILSTTHTIERLALFDQFPYT-RHMECGVLLVRKPSG 368 +Y++C+ SL RD+ + + + LA+FD P + R +E RK S Sbjct: 303 VYVACDHSSLRRDVDDPEHGFEARGYEMRTLAVFDHAPTSARWIEVVATFHRKSSA 358 >gi|223042058|ref|ZP_03612234.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Actinobacillus minor 202] gi|223017133|gb|EEF15569.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Actinobacillus minor 202] Length = 440 Score = 82.8 bits (203), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 56/181 (30%), Positives = 89/181 (49%), Gaps = 15/181 (8%) Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 F Q NA N M+ L + D +L+L+CG GNF+L LA+ V+ VE + V Sbjct: 270 FIQVNAEQNQKMVAQALNWLALEKSDRVLDLFCGMGNFTLPLAQQAGYVVGVEGVEEMVV 329 Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD 305 AR N N ++NV + + E R D + F + +DP R G Sbjct: 330 TARQNAVENQLDNVAFYQTNLDE------------RFVDQPWATEAFNKVLLDPARHGAY 377 Query: 306 DATVGMVQAYPH-ILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHMECGVLLV 363 A + + P I+Y+SCNP +L RD ++ + +++ ++A+ D FP+T H+E L V Sbjct: 378 FALDHLCELNPERIVYVSCNPATLVRDAEKLIKSGYSLAKVAVIDMFPHTGHLESISLFV 437 Query: 364 R 364 + Sbjct: 438 K 438 >gi|237833067|ref|XP_002365831.1| tRNA (Uracil-5-)-methyltransferase domain-containing protein [Toxoplasma gondii ME49] gi|211963495|gb|EEA98690.1| tRNA (Uracil-5-)-methyltransferase domain-containing protein [Toxoplasma gondii ME49] Length = 426 Score = 82.8 bits (203), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 50/157 (31%), Positives = 80/157 (50%), Gaps = 16/157 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 LL+ YCG G F+L FD V+ ++ S+E A+YN N + +K F ++ Sbjct: 240 LLDCYCGVGLFALACHDDFDEVVGFDVCSSSIELAKYNAQFNSKWRARFEVSDAKNFFES 299 Query: 273 MRREREFNRLKDIDIHSYRFKT---IFVDPPRSGLD-DATVGMVQAYPH-ILYISCNPDS 327 HS K+ + +DPPR G D + + +++ P I+YISC+P + Sbjct: 300 FSAG-----------HSSSDKSRLFVVLDPPRKGCDSEFLLSLLKLKPERIVYISCHPAT 348 Query: 328 LCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 RDL + +T++ + FD FP+TRH+EC + L R Sbjct: 349 QARDLKAVLPLYTVKNIQPFDMFPHTRHIECVITLER 385 >gi|78187968|ref|YP_376011.1| 23S rRNA methyltransferase [Chlorobium luteolum DSM 273] gi|78167870|gb|ABB24968.1| 23S rRNA m(5)U-1939 methyltransferase [Chlorobium luteolum DSM 273] Length = 476 Score = 82.8 bits (203), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 60/191 (31%), Positives = 90/191 (47%), Gaps = 14/191 (7%) Query: 178 LIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELYCGNGNFSLVLARHFDRVLA 236 L +R NSF Q N + +L AA + + +LYCG G +L +ARH + Sbjct: 295 LDFRISANSFFQTNTRQAEALYACILRAAGLKAEDTVYDLYCGTGTITLFMARHCRMAVG 354 Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296 +E+ + S++ AR N N + N + K+F L +D + R + Sbjct: 355 LEVVESSIQDARANAEFNSIRNAVFFQADLKDFG---------TLLPTLDSYG-RPDVVV 404 Query: 297 VDPPRSGL-DDATVGMVQAYP-HILYISCNPDSLCRD-LSILSTTHTIERLALFDQFPYT 353 DPPR+G+ A MVQ I+Y+SCNP SL RD I + + +E + D FP+T Sbjct: 405 TDPPRAGMHPKALQAMVQLEARRIIYVSCNPASLGRDGKEIAAAGYRLESVEPVDMFPHT 464 Query: 354 RHMECGVLLVR 364 H+E VR Sbjct: 465 AHIESVACFVR 475 >gi|299783515|gb|ADJ41513.1| TrmA family tRNA (Uracil-5-)-methyltransferase [Lactobacillus fermentum CECT 5716] Length = 469 Score = 82.8 bits (203), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 53/165 (32%), Positives = 79/165 (47%), Gaps = 22/165 (13%) Query: 208 GIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265 G+ G +++ YCG G SL +A+H V VEI ++ A+ N A N + N V Sbjct: 305 GLDGSKTVIDAYCGIGTISLAVAKHAKHVYGVEIVPAAIADAKQNAANNGIENATFV--- 361 Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD----DATVGMVQAYPHILYI 321 + E +F + + + + VDPPR GLD +AT M A ++Y+ Sbjct: 362 ------VGKAEEQFAKWQ---AEGLKPDVVIVDPPRKGLDAQLIEATGKM--APQKVIYV 410 Query: 322 SCNPDSLCRDLSILSTT--HTIERLALFDQFPYTRHMECGVLLVR 364 SCNP +L RDL + H + + DQFP T H+E +L R Sbjct: 411 SCNPATLVRDLQRFAEQGYHVTKPIQPVDQFPQTTHVESVTVLER 455 >gi|254881958|ref|ZP_05254668.1| RNA methyltransferase [Bacteroides sp. 4_3_47FAA] gi|319641039|ref|ZP_07995743.1| RNA methyltransferase [Bacteroides sp. 3_1_40A] gi|254834751|gb|EET15060.1| RNA methyltransferase [Bacteroides sp. 4_3_47FAA] gi|317387283|gb|EFV68158.1| RNA methyltransferase [Bacteroides sp. 3_1_40A] Length = 473 Score = 82.8 bits (203), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 63/209 (30%), Positives = 100/209 (47%), Gaps = 24/209 (11%) Query: 169 ERLTVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGDLL--ELYC 218 E + G I+ ++E SF Q N+G + L V G+ G L +LY Sbjct: 276 EVMVFKGNDHIFEEMEGLRFKIGAKSFYQTNSG-QAYNLYKVARNFAGLTGKELVYDLYT 334 Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278 G G + ++R +V+ +E ++E A+ N A N ++N K+ +E Sbjct: 335 GTGTIANFVSRQAKKVIGIEYVPEAIEDAKVNSAINGIDNTLFYAGDMKDILT-----QE 389 Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGL-DDATVGMVQAYPH-ILYISCNPDSLCRDLSILS 336 F I+ H R I DPPR+G+ DD ++ A P I+Y+SCNP + RDLS+L Sbjct: 390 F-----INQHG-RPDVIITDPPRAGMHDDVINTILFAEPQRIVYVSCNPATQARDLSLLD 443 Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVRK 365 + + + D FP+T H+E VLL ++ Sbjct: 444 AKYKVMAVQPVDMFPHTHHVENVVLLEKR 472 >gi|224543151|ref|ZP_03683690.1| hypothetical protein CATMIT_02351 [Catenibacterium mitsuokai DSM 15897] gi|224523938|gb|EEF93043.1| hypothetical protein CATMIT_02351 [Catenibacterium mitsuokai DSM 15897] Length = 479 Score = 82.8 bits (203), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 48/161 (29%), Positives = 84/161 (52%), Gaps = 15/161 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G L+ +++ +V+ VE+ K +V+ A+ N N V N+K ++ + EF Sbjct: 231 IMDTYCGIGTIGLIASKNAKQVIGVELNKDAVKDAKLNKTFNKVENIKFIQGDATEFMVE 290 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCR 330 +++ D+D+ I +DPPRSG + + V P I+Y+SC+P + R Sbjct: 291 AAKQKV-----DVDV-------IIMDPPRSGSTETFIKAAVSLKPKEIVYVSCDPHTQVR 338 Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRKPSGWH 370 DL + + + + +D FP+T H+E VLL K H Sbjct: 339 DLKLFRKLGYDFKDVYPYDMFPFTSHVETVVLLSHKKPDSH 379 >gi|20808214|ref|NP_623385.1| SAM-dependent methyltransferase related to tRNA (uracil-5-)-methyltransferase [Thermoanaerobacter tengcongensis MB4] gi|254479579|ref|ZP_05092891.1| 23S rRNA (uracil-5-)-methyltransferase [Carboxydibrachium pacificum DSM 12653] gi|50401615|sp|Q8R933|Y1797_THETN RecName: Full=Uncharacterized RNA methyltransferase TTE1797 gi|20516809|gb|AAM24989.1| SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Thermoanaerobacter tengcongensis MB4] gi|214034482|gb|EEB75244.1| 23S rRNA (uracil-5-)-methyltransferase [Carboxydibrachium pacificum DSM 12653] Length = 450 Score = 82.8 bits (203), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 61/214 (28%), Positives = 103/214 (48%), Gaps = 31/214 (14%) Query: 157 KTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD---- 212 K ++ RDY+ E L L ++ SF Q N+ + E + + + GD Sbjct: 257 KLEVLYGRDYLIEELL----GLKFKISAFSFFQTNS----YGAERIYSTVREFAGDVSNK 308 Query: 213 -LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271 + +LYCG G +V+A +V+ +E+ + +V +A+ N A N + N + Sbjct: 309 TIFDLYCGTGTIGIVMAPLARKVIGIELVEEAVFSAKENAALNGLENAVFIA------GD 362 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD-DATVGMVQAYPH-ILYISCNPDSLC 329 ++ RE DI + VDPPRSG++ A +V P I+Y+SCNP+S Sbjct: 363 VSKKLREIKEKPDI---------VVVDPPRSGVNPKALEDIVNFEPEKIIYVSCNPESFA 413 Query: 330 RDLSI-LSTTHTIERLALFDQFPYTRHMECGVLL 362 RDL + + + ++++ D FP+T H+E LL Sbjct: 414 RDLRLFVDKGYAVKKVKAIDMFPHTYHVELVGLL 447 >gi|311693681|gb|ADP96554.1| 23S rRNA 5-methyluridine methyltransferase [marine bacterium HP15] Length = 436 Score = 82.8 bits (203), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 64/190 (33%), Positives = 93/190 (48%), Gaps = 26/190 (13%) Query: 187 FTQPNAGINVHML----EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 FTQ NAGIN M+ EW L G + +L+L+CG GNF+L LA +V+ VE + Sbjct: 265 FTQVNAGINRAMVHRAVEW-LDVQPGER--VLDLFCGLGNFTLPLATRGGQVVGVEGDET 321 Query: 243 SVEAARYNIAANHVNNVKIVRMS-SKEFT-QAMRREREFNRLKDIDIHSYRFKTIFVDPP 300 V R N N ++NV +FT Q+ +E F I +DPP Sbjct: 322 MVVRGRENAELNGLDNVAFHGADLHGDFTGQSWAKE--------------GFDKILIDPP 367 Query: 301 RSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMEC 358 RSG ++ + I+Y+SCNP +L RD ++ + + R + D FP+T H+E Sbjct: 368 RSGAEEICKYLTAFGAQKIVYVSCNPATLARDAGVMVRNGYRLVRAGVMDMFPHTTHVES 427 Query: 359 GVLLVRKPSG 368 + L K SG Sbjct: 428 -IALFEKDSG 436 >gi|301060814|ref|ZP_07201628.1| 23S rRNA (uracil-5-)-methyltransferase RumA [delta proteobacterium NaphS2] gi|300445063|gb|EFK09014.1| 23S rRNA (uracil-5-)-methyltransferase RumA [delta proteobacterium NaphS2] Length = 466 Score = 82.8 bits (203), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 64/265 (24%), Positives = 122/265 (46%), Gaps = 29/265 (10%) Query: 105 FQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR 164 + ++ +TS++D + + H L + R+ R++ ++ + I K K+ Sbjct: 225 WMVNLVTSKNDASTL----HPLAEHLCRKFP-RIKTVVNNINGRKASIAVGEKEKVLTGD 279 Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL--AATKGIQGDLLELYCGNGN 222 ++++++ +R NSF Q N + + E VL A KG + +L+LY G G Sbjct: 280 GFINDKIG----PFSFRVSANSFFQTNTSAALKLYEQVLRYADPKGKE-QVLDLYSGTGT 334 Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282 + L+ V +EI++ + A+ N N+V+N + V +E Sbjct: 335 IPIFLSDRVRSVTGIEISESATADAKRNALVNNVHNCRFVCGDIRE-------------- 380 Query: 283 KDIDIHSYRFKTIFVDPPRSGL-DDATVGMVQAYPH-ILYISCNPDSLCRDLSILSTTHT 340 + ++ + +DPPR+G+ D + P I+Y+SCNP +L RDL I++ + Sbjct: 381 -KLGTVGFKPDIMIIDPPRAGMHKDVLAETMGINPRRIVYVSCNPATLARDLEIMAEAYE 439 Query: 341 IERLALFDQFPYTRHMECGVLLVRK 365 + + D FP+T H+E L R+ Sbjct: 440 LNEIQPVDMFPHTYHIESVAKLSRR 464 >gi|323340242|ref|ZP_08080506.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus ruminis ATCC 25644] gi|323092433|gb|EFZ35041.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus ruminis ATCC 25644] Length = 464 Score = 82.8 bits (203), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 58/211 (27%), Positives = 93/211 (44%), Gaps = 19/211 (9%) Query: 155 ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL 214 ++T RDY+ E+L L R +F Q N M + V A QG++L Sbjct: 265 GDETTRIFGRDYIIEKLGDVSFKLSAR----AFFQMNPVQTKKMYDEVKQALNLKQGEIL 320 Query: 215 -ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273 + YCG G L + VL +++ ++ A+ N A + + NV +K+ Sbjct: 321 VDAYCGVGTIGLYCGKEAGLVLGMDVVSEAIADAKENAAMSGIKNVVYEEGDAKKIFAKW 380 Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRD 331 + + +F + VDPPR+GLDD T+ ++ +Y+SCNP +L RD Sbjct: 381 EKAGQ------------KFDALVVDPPRTGLDDETIKVILRNKPKKFVYVSCNPSTLARD 428 Query: 332 LSILSTTHTIERLALFDQFPYTRHMECGVLL 362 L L + + + + D FP T E V L Sbjct: 429 LVSLVSKYDVSYIQPIDMFPQTARTEAVVKL 459 >gi|170077182|ref|YP_001733820.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Synechococcus sp. PCC 7002] gi|169884851|gb|ACA98564.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Synechococcus sp. PCC 7002] Length = 452 Score = 82.8 bits (203), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 66/217 (30%), Positives = 103/217 (47%), Gaps = 32/217 (14%) Query: 155 ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATK---GIQG 211 + TK R Y++E AG TL R +F Q +N E +L A G Sbjct: 254 GDTTKAIAGRPYLEE--IFAGLTLKLR--PETFFQ----VNTSAAEALLTAITQQLTFTG 305 Query: 212 D--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269 + L++ YCG G F+L LA+ + + +E+ S++ A N N ++NV+ + + Sbjct: 306 EEILVDAYCGVGTFTLPLAKKVQQAIGIEVQASSIQQAWENAHHNDIHNVEFYAGTVESI 365 Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDS 327 L +D+ + + +DPPR G D + ++ + P I+YISCNP + Sbjct: 366 ------------LPSLDVTA---DIVLLDPPRKGCDRQVLDALLHSKPKQIVYISCNPAT 410 Query: 328 LCRDLSILSTT--HTIERLALFDQFPYTRHMECGVLL 362 L RDL L T + I+ + D FP T H+EC VLL Sbjct: 411 LARDLKHLCATQQYQIQWVQPADFFPQTPHVECAVLL 447 >gi|260771269|ref|ZP_05880196.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Vibrio furnissii CIP 102972] gi|260613866|gb|EEX39058.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Vibrio furnissii CIP 102972] Length = 440 Score = 82.8 bits (203), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 75/242 (30%), Positives = 113/242 (46%), Gaps = 43/242 (17%) Query: 144 ARKYQIQLIGRANKTKICLDRDYVDERLT-VAGRTLIYRQI-------ENSFTQPNAGIN 195 A K Q L A + + L R E L V G +Y ++ ++F Q N +N Sbjct: 219 AAKDQSALEAFAAQHDLTLYRMPSSESLEHVCGEGAVYGEVGVTIPFLPSNFIQVNQPVN 278 Query: 196 VHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251 M L W LA T + +L+L+CG GNFSL LA+ +V+ VE VE A+ N Sbjct: 279 QAMVAQALAW-LAVTP--EERVLDLFCGLGNFSLPLAKLAKQVVGVEGIDDMVERAKANA 335 Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY---RFKTIFVDPPRSGLDDAT 308 N ++NV F QA N +D+ ++ +F + +DP R+G Sbjct: 336 TRNDLHNV--------SFYQA-------NLEQDMTGETWAAEKFDKVLLDPARAG----A 376 Query: 309 VGMVQ-----AYPHILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHMECGVLL 362 G+V ++Y+SCNP +L RD S+LS + +L + D FP+T H+E L Sbjct: 377 AGIVDQLAALGAKRVVYVSCNPATLARDSQSLLSQGFQLVKLGMLDMFPHTSHLESMALF 436 Query: 363 VR 364 V+ Sbjct: 437 VK 438 >gi|294775567|ref|ZP_06741077.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides vulgatus PC510] gi|294450617|gb|EFG19107.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides vulgatus PC510] Length = 473 Score = 82.8 bits (203), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 63/209 (30%), Positives = 100/209 (47%), Gaps = 24/209 (11%) Query: 169 ERLTVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGDLL--ELYC 218 E + G I+ ++E SF Q N+G + L V G+ G L +LY Sbjct: 276 EVMVFKGNDHIFEEMEGLRFKIGAKSFYQTNSG-QAYNLYKVARNFAGLTGKELVYDLYT 334 Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278 G G + ++R +V+ +E ++E A+ N A N ++N K+ +E Sbjct: 335 GTGTIANFVSRQAKKVIGIEYVPEAIEDAKVNSAINGIDNTLFYAGDMKDILT-----QE 389 Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGL-DDATVGMVQAYPH-ILYISCNPDSLCRDLSILS 336 F I+ H R I DPPR+G+ DD ++ A P I+Y+SCNP + RDLS+L Sbjct: 390 F-----INQHG-RPDVIITDPPRAGMHDDVINTILFAEPQRIVYVSCNPATQARDLSLLD 443 Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVRK 365 + + + D FP+T H+E VLL ++ Sbjct: 444 AKYKVMAVQPVDMFPHTHHVENVVLLEKR 472 >gi|194873870|ref|XP_001973294.1| GG13433 [Drosophila erecta] gi|190655077|gb|EDV52320.1| GG13433 [Drosophila erecta] Length = 615 Score = 82.8 bits (203), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 48/168 (28%), Positives = 85/168 (50%), Gaps = 20/168 (11%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +L++ CG G +L A+H +V+ VEI +++ A +N AN + N K ++ +F ++ Sbjct: 419 MLDICCGTGTITLAFAKHCRKVMGVEIVPDAIKDAEFNAEANGIKNAKFFTGNANDFIKS 478 Query: 273 MRREREFNRL--KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ---AYPHILYISCNPDS 327 M RE +++ K +D+ VDPPR+GL ++ ++ A ++Y+SCNP S Sbjct: 479 MVREALYDQEPGKPVDL------IAVVDPPRAGLHHRSIAAIRSADAINRLVYVSCNPHS 532 Query: 328 LCRDLSILSTTHTIE---------RLALFDQFPYTRHMECGVLLVRKP 366 R+ L+ + + D FP+T H E +L R+P Sbjct: 533 AKRNFIELARPESKQYKGEPFYPKSAVAVDMFPHTMHTELVILFEREP 580 >gi|261404859|ref|YP_003241100.1| TrmA family RNA methyltransferase [Paenibacillus sp. Y412MC10] gi|261281322|gb|ACX63293.1| RNA methyltransferase, TrmA family [Paenibacillus sp. Y412MC10] Length = 523 Score = 82.8 bits (203), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 87/164 (53%), Gaps = 19/164 (11%) Query: 208 GIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265 G+ G+ +++ YCG G SL LA+H +V VEI K ++E AR N N + +V+ + Sbjct: 372 GLTGEETVIDAYCGIGTISLFLAQHAKKVYGVEIVKEAIEDARANAELNGMKHVEFEVGA 431 Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISC 323 S++ R K+ I + I VDPPR G D + +++ P ++Y+SC Sbjct: 432 SEDV---------IPRWKEQGIEA---DVIVVDPPRKGCDPRLLETILEMKPERVVYVSC 479 Query: 324 NPDSLCRDLSILSTT--HTIERLALFDQFPYTRHMECGVLLVRK 365 NP +L RDL IL T+E + D FP+T H+E +LV K Sbjct: 480 NPSTLARDLRILEDGGYRTVE-VTPVDMFPHTVHVESVAVLVWK 522 >gi|16761736|ref|NP_457353.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29143220|ref|NP_806562.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213163047|ref|ZP_03348757.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213424910|ref|ZP_03357660.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213581488|ref|ZP_03363314.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213648277|ref|ZP_03378330.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|289829826|ref|ZP_06547341.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|20140067|sp|Q8Z446|RUMA_SALTI RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|25322739|pir||AH0860 probable RNA methyltransferase (EC 2.1.1.-) [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16504037|emb|CAD06071.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhi] gi|29138853|gb|AAO70422.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 431 Score = 82.8 bits (203), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 57/187 (30%), Positives = 90/187 (48%), Gaps = 27/187 (14%) Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 F Q N +N M LEW+ + +L+L+CG GNF+L LA V+ VE + Sbjct: 262 FIQVNEAVNQQMVARALEWLDVRA---EDRVLDLFCGMGNFTLPLATRAASVVGVEGVQA 318 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDP 299 VE R N N ++NV + +E D+ + F + +DP Sbjct: 319 LVEKGRENAIRNGLHNVTFFHENLEE---------------DVTKQPWAKNGFDKVLLDP 363 Query: 300 PRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHME 357 R+G +++ P I+Y+SCNP +L RD ++++ + + RLA+ D FP+T H+E Sbjct: 364 ARAGATGVMRHIIKLKPIRIVYVSCNPATLARDSEALVNAGYEVTRLAMLDMFPHTGHLE 423 Query: 358 CGVLLVR 364 VL R Sbjct: 424 SMVLFER 430 >gi|189501463|ref|YP_001960933.1| RNA methyltransferase, TrmA family [Chlorobium phaeobacteroides BS1] gi|189496904|gb|ACE05452.1| RNA methyltransferase, TrmA family [Chlorobium phaeobacteroides BS1] Length = 480 Score = 82.4 bits (202), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 72/263 (27%), Positives = 118/263 (44%), Gaps = 34/263 (12%) Query: 111 TSQSDQAIVTLI---YHRLLDDAWRECAIRLRDALHARKYQI--------QLIGRANKTK 159 + + D+ +V L+ Y L A+R+ RL +A+ +K I + K Sbjct: 227 SEERDELMVNLVTSSYDSALMKAYRD---RLLEAMPGQKMTIVNNVTTRKNTVAVGEKEF 283 Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELY 217 + + ERL L +R NSF Q N + + ++ G++ D + +LY Sbjct: 284 VVHGEGVIQERLG----DLQFRISANSFFQTNTKQAEALYDGIMQMA-GLRKDDTVYDLY 338 Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277 CG G +L LA + + +EI + S+ A N + N + N R+ K+F + Sbjct: 339 CGTGTITLYLAERCRQAVGLEIVESSLSDAAENASRNGIANASFYRVDLKDFHTLLGTLE 398 Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGL-DDATVGMVQAYPH-ILYISCNPDSLCRD-LSI 334 EF + I DPPR+G+ A MV+ P I+Y+SCNP +L RD I Sbjct: 399 EFGFP----------RVIVTDPPRAGMHPKALKTMVRLQPETIVYVSCNPANLARDGKEI 448 Query: 335 LSTTHTIERLALFDQFPYTRHME 357 + + +E + D FP+T H+E Sbjct: 449 CAANYRLEEVQPVDMFPHTSHIE 471 >gi|297580019|ref|ZP_06941946.1| conserved hypothetical protein [Vibrio cholerae RC385] gi|297535665|gb|EFH74499.1| conserved hypothetical protein [Vibrio cholerae RC385] Length = 377 Score = 82.4 bits (202), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 54/184 (29%), Positives = 86/184 (46%), Gaps = 19/184 (10%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGI-QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 SF Q N + + A + I + +L+CG G F+L A V +EI + Sbjct: 208 KSFFQTNPKVAEQLYATARAWVREIAPTQMWDLFCGVGGFALHCAAPNTAVTGIEIEPEA 267 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 + +A+ + ++N+ + S +F+Q+ E + V+PPR G Sbjct: 268 IASAQRSAQMMEIDNLSFAALDSAKFSQSQMSAPEL---------------VLVNPPRRG 312 Query: 304 LDDATVGMVQAYP--HILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVL 361 L ++A HILY SCNP ++ +D++ LS+ I R+ FD FP+T H E L Sbjct: 313 LGSELTAQLEALAPKHILYSSCNPQTMVKDIAELSSYQMI-RVEWFDMFPHTDHAEVLTL 371 Query: 362 LVRK 365 LVRK Sbjct: 372 LVRK 375 >gi|269302671|gb|ACZ32771.1| RNA methyltransferase family protein [Chlamydophila pneumoniae LPCoLN] Length = 401 Score = 82.4 bits (202), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 52/158 (32%), Positives = 83/158 (52%), Gaps = 19/158 (12%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 LL+LYCG G ++L+ + V+ VEI +V +A+ NI AN+ + V + E +A Sbjct: 255 LLDLYCGAGTIGIMLSPYVKNVIGVEIIPDAVASAQENIKANNKEDCVEVYL---EDAKA 311 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSL-- 328 + E + D+ I +DPPR G+ + + P I+YISCNP + Sbjct: 312 FCKRNENCKAPDV---------IVIDPPRCGMQSKVLKYILRIESPKIVYISCNPKTQFQ 362 Query: 329 -CRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 C DL +S + I+++ DQFPY+ H+E +LL R+ Sbjct: 363 ECADL--ISGGYRIKKMQPIDQFPYSTHLENIILLERE 398 >gi|66046925|ref|YP_236766.1| 23S rRNA 5-methyluridine methyltransferase [Pseudomonas syringae pv. syringae B728a] gi|75501105|sp|Q4ZQ44|RUMA_PSEU2 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|63257632|gb|AAY38728.1| tRNA (uracil-5-)-methyltransferase/TrmA [Pseudomonas syringae pv. syringae B728a] Length = 451 Score = 82.4 bits (202), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 56/182 (30%), Positives = 89/182 (48%), Gaps = 17/182 (9%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 F Q NA +N M+E L + + +++L+CG GNF+L LA V+AVE Sbjct: 279 GDFIQVNASVNTAMIEQALQWLAPAKDERVMDLFCGLGNFALPLAGLARDVVAVEGVATM 338 Query: 244 VEAARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302 VE A N +N ++NV+ + S+ TQA D + F + +DPPR Sbjct: 339 VERAAVNAMSNDLHNVRFFQADLSQPLTQA-------------DWAAEGFSAVLLDPPRD 385 Query: 303 GLDDATVGMVQAYP-HILYISCNPDSLCRD-LSILSTTHTIERLALFDQFPYTRHMECGV 360 G + + + +LY+SCNP +L RD + ++ + ++R + D FP T H+E Sbjct: 386 GAFEVVRQIRKTGARRLLYVSCNPATLARDAVELIRQGYRLKRAGILDMFPQTAHVEAMA 445 Query: 361 LL 362 L Sbjct: 446 LF 447 >gi|308048558|ref|YP_003912124.1| RNA methyltransferase, TrmA family [Ferrimonas balearica DSM 9799] gi|307630748|gb|ADN75050.1| RNA methyltransferase, TrmA family [Ferrimonas balearica DSM 9799] Length = 447 Score = 82.4 bits (202), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 89/336 (26%), Positives = 143/336 (42%), Gaps = 57/336 (16%) Query: 42 HYRMRAEFHIWHDGDDLYHIMFDQQTKERMR-IDYFM----PGSLLINALMIEMMATIRL 96 HYR RA +D +L + F Q+ R+ ID+ P S LI L +++A ++L Sbjct: 135 HYRRRARLGCRYDAGELV-LGFRQEGSNRLTAIDHCPVLAEPLSELITPLQ-QLLAPLKL 192 Query: 97 EPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRAN 156 + +D + + +V + L ++ R+AL A G++ Sbjct: 193 A----RHVGHLDLMLASEGPVVVVRLLRPLREEE--------REALAA-------FGQSR 233 Query: 157 KTKICLDRDYVDERLTVAGRTLIYRQIEN---------SFTQPNAGINVHML----EWVL 203 ++ + D + + A L Y E F Q N +N M+ EW L Sbjct: 234 GVQMLIQGDALTDLSGQAVAPLHYDIGEGRPQPAFLPGDFFQVNGVVNQAMISQAIEW-L 292 Query: 204 AATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVR 263 G +G L+L+CG GNF+L LA ++ VE VE AR A + ++ Sbjct: 293 QPQPGEKG--LDLFCGGGNFTLALAGQSAEIIGVEGVPAMVERARARAAELGLEQLRF-- 348 Query: 264 MSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP-HILYIS 322 E+ + LKD+D + +DP R+G + + P ILY++ Sbjct: 349 ----EYADLNGEAPKAQWLKDVDW-------VLLDPARAGAPGVMEWLAKLRPSRILYVA 397 Query: 323 CNPDSLCRDLSILS-TTHTIERLALFDQFPYTRHME 357 CNP SL RD +L+ + + RL L D FP+T H+E Sbjct: 398 CNPASLGRDGKVLAQQGYRLSRLGLVDMFPHTHHLE 433 >gi|255311574|ref|ZP_05354144.1| rRNA methyltransferase [Chlamydia trachomatis 6276] gi|255317875|ref|ZP_05359121.1| rRNA methyltransferase [Chlamydia trachomatis 6276s] Length = 396 Score = 82.4 bits (202), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 71/255 (27%), Positives = 119/255 (46%), Gaps = 43/255 (16%) Query: 124 HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQI 183 LLD +I + L AR +T ++ ++L++ GR+ ++ Sbjct: 169 QSLLDSGLPITSIFWEEKLSARNSPTTF-----RTTHLYGAPFLKQQLSIDGRSSLFHIR 223 Query: 184 ENSFTQPNAGINVHMLEWVLAATKGIQG-----------DLLELYCGNGNFSLVLARHFD 232 SF QP + L A K IQ LL+LYCG G S++LA + Sbjct: 224 PRSFFQPQS----------LQAEKIIQTIKEFIDPCGEETLLDLYCGAGIISILLAPYVK 273 Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292 +++ VE+ +V +A+ NI N V ++++ +K+F + R E L DI Sbjct: 274 KIIGVELVPDAVASAQENIQLNSV-DMEVFLEDAKQFCK--RNE----NLPSPDI----- 321 Query: 293 KTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQ 349 + +DPPR G+ + + + A I+Y+SCNP + ++ S+L + + R+ DQ Sbjct: 322 --VVIDPPRCGMQNRALKYLLRMAPKKIVYVSCNPLTQIQECSVLVEQGYQLRRMQPIDQ 379 Query: 350 FPYTRHMECGVLLVR 364 FP+T H+E VLL R Sbjct: 380 FPHTNHLENIVLLER 394 >gi|90412092|ref|ZP_01220099.1| 23S rRNA (uracil-5-)-methyltransferase [Photobacterium profundum 3TCK] gi|90327070|gb|EAS43449.1| 23S rRNA (uracil-5-)-methyltransferase [Photobacterium profundum 3TCK] Length = 454 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 57/179 (31%), Positives = 81/179 (45%), Gaps = 15/179 (8%) Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 F Q N +N M+E D +L+L+CG GNFSL LA+H V+ VE V Sbjct: 273 FIQVNRDVNKKMVEQATDWLDLQPNDRVLDLFCGLGNFSLPLAKHAKAVVGVEGIDEMVH 332 Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD 305 A N N +N + + E + RE F I +DP R+G Sbjct: 333 RASENAMCNKQSNAAFYQANLDEDVTKLAWARE------------PFNKILLDPARAGAA 380 Query: 306 DATVGMVQAYPH-ILYISCNPDSLCRDLSI-LSTTHTIERLALFDQFPYTRHMECGVLL 362 +V+ P ++Y+SCNP +L RD + L + +ERL + D FP T H+E L Sbjct: 381 GVMEHVVKLKPERVVYVSCNPATLARDSQVLLKKGYQLERLGMLDMFPQTGHLESMALF 439 >gi|256846121|ref|ZP_05551579.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Fusobacterium sp. 3_1_36A2] gi|256719680|gb|EEU33235.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Fusobacterium sp. 3_1_36A2] Length = 462 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 43/155 (27%), Positives = 80/155 (51%), Gaps = 14/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ Y G G +++A+ +V A+EI K + E N + N++ + + Sbjct: 320 IVDAYSGTGTIGMIMAKKTKKVYAIEIVKSASEDGEKTAKENGIKNIEFINGAV------ 373 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP-HILYISCNPDSLCRD 331 E+E +L + ++ + TI DPPR GL+ + + V ++YISCNP + RD Sbjct: 374 ---EKEIIKLIN---NNQKIDTIIFDPPRKGLEASIIDTVAELNLKVVYISCNPSTFARD 427 Query: 332 LSILST-THTIERLALFDQFPYTRHMECGVLLVRK 365 + + S + +++L D FP T H+EC L+V++ Sbjct: 428 VKLFSERGYVLKKLQAVDMFPQTSHIECVGLIVKE 462 >gi|239625789|ref|ZP_04668820.1| RNA methyltransferase [Clostridiales bacterium 1_7_47_FAA] gi|239520019|gb|EEQ59885.1| RNA methyltransferase [Clostridiales bacterium 1_7_47FAA] Length = 462 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 72/265 (27%), Positives = 118/265 (44%), Gaps = 34/265 (12%) Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD 165 Q +YL + + A+++ RLL R LH + + +++ T + +D Sbjct: 220 QREYLGGRDEAAVLSGWKERLL---ALPVDGRFAGILHTENDSLADVVQSDATHVLYGQD 276 Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-----LLELYCGN 220 + E L L +R SF Q N+ E + +G G+ + +LY G Sbjct: 277 FFYEELL----GLRFRISPFSFFQTNS----MGAEVLYDTARGFVGETKDKVVFDLYSGT 328 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G + +LA +V+ VEI + +VEAA+ N N ++N + V + Sbjct: 329 GTIAQILAPVAKKVVGVEIVEEAVEAAKVNAGLNGLDNCEFVAG---------------D 373 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILST- 337 LK ID + I VDPPR G+ +G + + I+YISC P SL RDL +L Sbjct: 374 VLKVIDDLEDKPDLIVVDPPRDGIHPKALGKIIEFGVDRIVYISCKPTSLVRDLVVLQER 433 Query: 338 THTIERLALFDQFPYTRHMECGVLL 362 + +E++ D FP T ++E L+ Sbjct: 434 GYRVEKVCAMDMFPGTGNVEVVTLM 458 >gi|294618092|ref|ZP_06697689.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium E1679] gi|291595664|gb|EFF26960.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium E1679] Length = 457 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 59/214 (27%), Positives = 103/214 (48%), Gaps = 20/214 (9%) Query: 155 ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL- 213 +K K+ RDY++++L G+T YR SF Q N ++ + + + + D+ Sbjct: 258 GDKEKVLYGRDYIEDQLL--GKT--YRISAKSFYQVNTQQAEYLYQTAIEFAELDKKDIV 313 Query: 214 LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273 ++ Y G G L LA D+V +E+ ++E A++N N + N V + + M Sbjct: 314 IDAYSGIGTIGLSLADRVDKVYGMEVIPEAIEDAQFNSLNNKIEN---VHYEVGKAEKVM 370 Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCRD 331 ++ +E + I VDPPR GLD + ++ P I+YISCNP + RD Sbjct: 371 KKWQE---------KGVKPSVIVVDPPRKGLDHHFIESAIEMSPERIVYISCNPATFARD 421 Query: 332 LSILSTT-HTIERLALFDQFPYTRHMECGVLLVR 364 +L+ + ++++ D FP T H+E V+ Sbjct: 422 AKLLTEAGYVVKKVQPVDLFPQTHHIELVASFVK 455 >gi|240145247|ref|ZP_04743848.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Roseburia intestinalis L1-82] gi|257202710|gb|EEV00995.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Roseburia intestinalis L1-82] Length = 621 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 65/229 (28%), Positives = 110/229 (48%), Gaps = 20/229 (8%) Query: 155 ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-- 212 K + + Y+++ T+ G T +R SF Q N + +L G+ G Sbjct: 297 GEKETVIYGKGYIED--TLCGCT--FRISPKSFYQVNP-VQTEILYTKAIEYAGLTGKER 351 Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G L+ A V++VE+ + +V A N N + NV+ + +F Sbjct: 352 IVDAYCGIGTIGLIAASKAKEVISVELNRDAVRDAVTNAKRNDIKNVQFYNADAGQFMVE 411 Query: 273 M---RREREFNRLKDIDIHSYR------FKTIFVDPPRSGLDDATVGMV--QAYPHILYI 321 M R +++ N++ D + +F+DPPR+G D+A + V A ++YI Sbjct: 412 MAEYRADQKKNQVPDATKSGKKATPDGNVDVVFMDPPRAGSDEAFLSSVIRLAPKRVVYI 471 Query: 322 SCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLV-RKPSG 368 SCN ++L RDL L+ + + D FP+T+H+E VLL +KP G Sbjct: 472 SCNLETLARDLKYLTKHGYQAKECQPVDLFPWTKHVETVVLLSHKKPDG 520 >gi|293569131|ref|ZP_06680438.1| hypothetical RNA methyltransferase [Enterococcus faecium E1071] gi|291588178|gb|EFF20019.1| hypothetical RNA methyltransferase [Enterococcus faecium E1071] Length = 245 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 59/214 (27%), Positives = 103/214 (48%), Gaps = 20/214 (9%) Query: 155 ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL- 213 +K K+ RDY++++L G+T YR SF Q N ++ + + + + D+ Sbjct: 46 GDKEKVLYGRDYIEDQLL--GKT--YRISAKSFYQVNTQQAEYLYQTAIEFAELDKKDIV 101 Query: 214 LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273 ++ Y G G L LA D+V +E+ ++E A++N N + N V + + M Sbjct: 102 IDAYSGIGTIGLSLADRVDKVYGMEVIPEAIEDAQFNSLNNKIEN---VHYEVGKAEKVM 158 Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCRD 331 ++ +E + I VDPPR GLD + ++ P I+YISCNP + RD Sbjct: 159 KKWQE---------KGVKPSVIVVDPPRKGLDHHFIESAIEMSPERIVYISCNPATFARD 209 Query: 332 LSILSTT-HTIERLALFDQFPYTRHMECGVLLVR 364 +L+ + ++++ D FP T H+E V+ Sbjct: 210 AKLLAEAGYVVKKVQPVDLFPQTHHIELVASFVK 243 >gi|291527500|emb|CBK93086.1| 23S rRNA m(5)U-1939 methyltransferase [Eubacterium rectale M104/1] Length = 493 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 100/407 (24%), Positives = 174/407 (42%), Gaps = 55/407 (13%) Query: 10 YEQQLAEKVDRLRQMML---AFQVPNLQ------IFRSEPIHYRMRAEFHIWHDGD-DLY 59 YE+QL K +++R ++ F L + P YR +A+F + +D D ++ Sbjct: 87 YEKQLEFKNNKVRNNLMRIGGFSEAKLDSKMQPPVGADNPYRYRNKAQFPVGYDRDGNIV 146 Query: 60 HIMFDQQTKERMRID---YFMPGSLLINALMIEMMATIRLEP--------LLRAKLFQID 108 + ++ + ++ +P + I ++ E M + P L+R L + Sbjct: 147 TGFYASRSHNIIPVEDCRLGVPQNKEILDIIKEWMNECGITPYDENTHKGLVRHVLIRYG 206 Query: 109 YLTSQSDQAIV----TLIYHRLLDDAWRECAIRLR--DALHARKYQIQ------LIGRAN 156 + + Q +V +L R +A RL D + + Y I ++G+ Sbjct: 207 FTSKQIMVCLVINGDSLEAKRRAGNAADILCERLSKIDGMTSISYNINKENTNVILGK-- 264 Query: 157 KTKICLDRDYVDERL--------TVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKG 208 KT R Y+++ + T G + Y+ SF Q N + LA G Sbjct: 265 KTVCIWGRPYIEDTIHLLSYPDFTPQGTGITYQISPQSFYQVNPKQTEKLYSTALAFA-G 323 Query: 209 IQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266 + G+ + +LYCG G SL L++ +V VEI ++E A+ N N + N + + Sbjct: 324 LTGNENVWDLYCGIGTISLFLSQKAKQVYGVEIVPQAIEDAKNNAKLNGITNAQFFVGKA 383 Query: 267 KE----FTQAMRREREFNRLKDIDIHS--YRFKTIFVDPPRSGLDDATVG-MVQAYPH-I 318 +E F + +++ H+ R I VDPPR G D+ + M+ P I Sbjct: 384 EEVLPQFYENAKKKENITDDTASTGHTDMLRPDVIVVDPPRKGCDEKCLDTMLAMSPERI 443 Query: 319 LYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364 +Y+SC+ +L RDL IL + + + FDQF +T H+E LL R Sbjct: 444 VYVSCDSATLARDLKILCEEKYELMKWQAFDQFSHTTHVESICLLER 490 >gi|229056263|ref|ZP_04195684.1| Uncharacterized RNA methyltransferase [Bacillus cereus AH603] gi|228721068|gb|EEL72606.1| Uncharacterized RNA methyltransferase [Bacillus cereus AH603] Length = 459 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 83/381 (21%), Positives = 166/381 (43%), Gaps = 42/381 (11%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQ------IFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63 Y++QL +K D + Q + +L+ + P HYR +++ + + + ++ Sbjct: 96 YKEQLNQKRDIVVQAFEKYMNDSLEEKIRPTLGMENPWHYRNKSQLQVGRKDEKVITGLY 155 Query: 64 DQQTKERMRIDYFM-------PGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTS-QSD 115 Q + + + I + M + ++ ++ ++ +I E + + I T+ Q+ Sbjct: 156 KQNSHQLIDISHCMIQHKATNEATKVVRRILEKLNVSIYNEKKQKGLVRTIVTRTAVQTG 215 Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175 + VTLI + + ++ + + K +Q + + I + D+ +AG Sbjct: 216 EVQVTLITTKEELPNKDQFIAEIQKQMPSVKSIMQNVNWRKTSVI-----FGDKTFKLAG 270 Query: 176 RTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLV 226 + +I + + +F Q N V + + A I + +++ YCG G L Sbjct: 271 KEVIQETLGDLSFELSARAFFQLNPEQTVVLYDEAKKAAALIGNEKIVDAYCGVGTIGLW 330 Query: 227 LARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDID 286 LA V +++ ++E A+ N + N K ++++ +E Sbjct: 331 LANDAAEVRGMDVIPEAIEDAKKNAKRHGFTNAKYEAGKAEQWLPKWVKE---------- 380 Query: 287 IHSYRFKTIFVDPPRSGLDDATVGMV-QAYP-HILYISCNPDSLCRDLSILSTTHTIERL 344 +R I VDPPR+G DD + + + P ++Y+SCNP SL RD+ L ++ +E + Sbjct: 381 --GWRPDVIVVDPPRTGCDDKLLETILKVKPKQVVYVSCNPSSLARDVETLMESYEVEYV 438 Query: 345 ALFDQFPYTRHMECGVLLVRK 365 D FP+T H+E V LVRK Sbjct: 439 QPVDMFPHTAHVENVVKLVRK 459 >gi|138893974|ref|YP_001124427.1| RNA methyltransferase-like protein [Geobacillus thermodenitrificans NG80-2] gi|196250476|ref|ZP_03149167.1| RNA methyltransferase, TrmA family [Geobacillus sp. G11MC16] gi|134265487|gb|ABO65682.1| RNA methyltransferase-like protein [Geobacillus thermodenitrificans NG80-2] gi|196209966|gb|EDY04734.1| RNA methyltransferase, TrmA family [Geobacillus sp. G11MC16] Length = 460 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 51/149 (34%), Positives = 73/149 (48%), Gaps = 17/149 (11%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G SL LA+ V VEI ++E A+ N A N + NV ++++ Sbjct: 314 VIDAYCGIGTISLFLAKKAKHVYGVEIVPEAIEDAKRNAALNGITNVTFAVGAAEDVIPR 373 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330 E R + VDPPR G D A + + A P ++Y+SCNP +L R Sbjct: 374 WYEE------------GIRADCLVVDPPRKGCDAALLETIMAMKPPRVVYVSCNPATLAR 421 Query: 331 DLSIL--STTHTIERLALFDQFPYTRHME 357 DL IL TIE + D FP+T H+E Sbjct: 422 DLRILEDGGYETIE-VQPVDMFPHTAHVE 449 >gi|195479026|ref|XP_002086546.1| GE22791 [Drosophila yakuba] gi|194186336|gb|EDW99947.1| GE22791 [Drosophila yakuba] Length = 615 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 48/168 (28%), Positives = 85/168 (50%), Gaps = 20/168 (11%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +L++ CG G +L A+H +V+ VEI +++ A +N AN + N K ++ +F ++ Sbjct: 419 MLDICCGTGTITLAFAKHCKKVMGVEIVPDAIKDAEFNAEANGIKNAKFFTGNADDFIKS 478 Query: 273 MRREREFNRL--KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ---AYPHILYISCNPDS 327 M RE +++ K +D+ VDPPR+GL ++ ++ A ++Y+SCNP S Sbjct: 479 MVREALYDQEPGKPLDL------IAVVDPPRAGLHHRSIAAIRSADAVNRLVYVSCNPHS 532 Query: 328 LCRDLSILSTTHTIE---------RLALFDQFPYTRHMECGVLLVRKP 366 R+ L+ + + D FP+T H E +L R+P Sbjct: 533 AKRNFIELARPESKQYKGEPFYPKSAVAVDMFPHTMHTELVILFEREP 580 >gi|161501989|ref|YP_001569101.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160863336|gb|ABX19959.1| hypothetical protein SARI_00005 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 431 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 57/187 (30%), Positives = 89/187 (47%), Gaps = 27/187 (14%) Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 F Q N +N M LEW+ + +L+L+CG GNF+L LA V+ VE Sbjct: 262 FIQVNEAVNQQMVARALEWLDVRA---EDRVLDLFCGMGNFTLPLATSAASVVGVEGVPA 318 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDP 299 VE R N N ++NV + +E D+ + F + +DP Sbjct: 319 LVEKGRENAIRNGLHNVTFFHENLEE---------------DVTKQPWAKNGFDKVLLDP 363 Query: 300 PRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHME 357 R+G +++ P ++Y+SCNP +L RD ++++ + RLA+ D FP+T H+E Sbjct: 364 ARAGATGVMRHIIKLKPIRVVYVSCNPATLARDSEALVNAGYEATRLAMLDMFPHTGHLE 423 Query: 358 CGVLLVR 364 VL VR Sbjct: 424 SMVLFVR 430 >gi|81429088|ref|YP_396088.1| TrmA family RNA methyltransferase [Lactobacillus sakei subsp. sakei 23K] gi|78610730|emb|CAI55781.1| Putative RNA methyltransferase, TrmA family [Lactobacillus sakei subsp. sakei 23K] Length = 463 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 93/385 (24%), Positives = 158/385 (41%), Gaps = 55/385 (14%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFR-------SEPIHYRMRAEFHIWHDGDDL---- 58 Y QLA K D + Q + F+ ++ P HYR +A+F + GD L Sbjct: 96 YPGQLAFKKDMMIQALEKFKPHGYNGYQVTETVGMENPWHYRNKAQFQVRQLGDHLGAGL 155 Query: 59 ----YHIMFD-----QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDY 109 H + D QT MRI + L+ L I + + +L+ + + + Sbjct: 156 YAPSSHTLIDLPEFATQTDLTMRIIRTV--LKLVEDLGIPVFDEEKNAGILKTIVVRESF 213 Query: 110 LTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQI-QLIGRANKTKICLDRDYVD 168 T ++ +T + L A+ A ++ ++ NK K L + D Sbjct: 214 STGEAQLTFIT-------NSPKLPKKYALITAIQAELPEVVSIMQNVNKGKNVLV--WGD 264 Query: 169 ERLTVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCG 219 + + +AG+ I + +F Q N M V A D L++ YCG Sbjct: 265 QTMHLAGQETIMENLNGVQFELTARAFFQLNPVQTAKMYNLVKEALDLTPEDRLVDAYCG 324 Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279 G L LA V ++ S+EAA++N N ++NV ++++ Sbjct: 325 VGTIGLSLANQVAEVRGMDTIADSIEAAKHNAEINGIDNVDYAVGAAEDL---------- 374 Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCRDLSILST 337 L + + + + VDPPR+GLD + ++ + P +Y+SCNP +L RDL L Sbjct: 375 --LPEWLDNGFVPTALVVDPPRTGLDPKLIDAILDSRPLKFVYVSCNPSTLARDLKTLVH 432 Query: 338 THTIERLALFDQFPYTRHMECGVLL 362 T+ +E++ D FP T +E V + Sbjct: 433 TYQVEKIQPLDMFPQTARVEAIVTM 457 >gi|291166646|gb|EFE28692.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Filifactor alocis ATCC 35896] Length = 543 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 48/155 (30%), Positives = 84/155 (54%), Gaps = 15/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++LYCG G SL L+R+ +V VEI + ++ A+ N + N ++NV+ + S++ Sbjct: 311 VIDLYCGIGTISLFLSRNAKKVYGVEIVEDAILDAKKNASHNQIDNVEFICGKSEDVLPQ 370 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCR 330 + ++ DI + +DPPR G D+ + ++ P I+YISCN +L R Sbjct: 371 LYKK---GICADI---------VMLDPPRKGCDETLLHVISEMNVPRIVYISCNSATLAR 418 Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364 D+ +L +T + + D F +T H+EC VLL + Sbjct: 419 DMKLLHELGYTADTVQPVDMFCHTMHVECVVLLSK 453 >gi|218886478|ref|YP_002435799.1| RNA methyltransferase, TrmA family [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218757432|gb|ACL08331.1| RNA methyltransferase, TrmA family [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 479 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 53/163 (32%), Positives = 81/163 (49%), Gaps = 14/163 (8%) Query: 205 ATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRM 264 A G + +LY G G +L LAR V EI +V AR N A N++ N V Sbjct: 325 AAAGPDDTVWDLYSGVGAIALHLARAAGAVRGFEITPEAVNDARANAARNNILNCSFV-- 382 Query: 265 SSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYIS 322 S + ++RRER + + + VDPPR+GL + V V A+ I+Y+S Sbjct: 383 -SGDVRASLRRERPGEGVSP--------RIVVVDPPRAGLHEDVVEAVSAHQPERIVYVS 433 Query: 323 CNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364 CNP ++ RD ++ + + ++ D FP++ H+EC LL R Sbjct: 434 CNPATMARDAALFTARGYALQEARPVDLFPHSPHVECVALLTR 476 >gi|15838949|ref|NP_299637.1| 23S rRNA 5-methyluridine methyltransferase [Xylella fastidiosa 9a5c] gi|20140309|sp|Q9PAY7|RUMA_XYLFA RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|9107532|gb|AAF85157.1|AE004045_15 RNA methyltransferase [Xylella fastidiosa 9a5c] Length = 443 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 57/184 (30%), Positives = 89/184 (48%), Gaps = 18/184 (9%) Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLA 236 ++R ++ F Q N G+N M+ L G+ +L+L+CG GNF+L LAR D V+ Sbjct: 266 FVFRPLD--FIQINGGLNEKMIAHALDLLGAGFGERVLDLFCGLGNFTLPLARTVDEVVG 323 Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296 VE VE AR N N + N + F + R++ +D F + Sbjct: 324 VEGDIGLVERARENARRNGLGNAEF-------FVADLTRDQ-----RDAPWMRQGFDKLL 371 Query: 297 VDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDLSILSTTH--TIERLALFDQFPYT 353 +DPPRSG + + ++ + I+Y+SC+P SL RD L + + D FP+T Sbjct: 372 LDPPRSGAIEVLKQLPLKMFERIVYVSCHPGSLARDADFLVNEQGFVLRAVGAMDMFPHT 431 Query: 354 RHME 357 H+E Sbjct: 432 AHVE 435 >gi|260495077|ref|ZP_05815206.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Fusobacterium sp. 3_1_33] gi|260197520|gb|EEW95038.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Fusobacterium sp. 3_1_33] Length = 457 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 87/380 (22%), Positives = 170/380 (44%), Gaps = 45/380 (11%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIH-YRMR--AEFHIWHDGDDLYHIMFDQ 65 +Y++ + E+V R + QV ++ SE I+ YR + F I+++ + F + Sbjct: 99 KYKKLMVEEVMRKIAGLSDIQVA--EVLASEDIYNYRNKIIEPFSIYNN--KIITGFFKR 154 Query: 66 QTKERMRIDYFMPGSLLINALMIEMMA-------TIRLEPLLRAKLFQIDYLTSQSDQAI 118 ++ E +D + S L N ++ E+ ++ E + L I T+ +++A+ Sbjct: 155 KSHEVFEVDENILNSKLGNRIIKELKEILNRNKISVYNEITHKGLLRNIMIRTNSNNEAM 214 Query: 119 VTLIYH-RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRT 177 V LI + + + ++ +LR+ + K I + + KT + ++ + + G Sbjct: 215 VVLIINSNKITENIKKLLFKLRENISEIK-SIYISLNSKKTNTVIG----EKNILIYGEK 269 Query: 178 LIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLA 228 I I SF Q N + + ++ I +++ Y G G +++A Sbjct: 270 SIKENINGIEFHISPTSFFQINVKQAKRLYDIAISFFDDIDNKYIVDAYSGTGTIGMIMA 329 Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288 + +V A+EI K + E N + N+K + + E+E +L + + Sbjct: 330 KKAKKVYAIEIVKSASEDGEKTAKENGIENIKFINGAV---------EKELVKLIN---N 377 Query: 289 SYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILSTT-HTIERLA 345 + + TI DPPR GL+ + + V ++YISCNP + RD+ + S + +++L Sbjct: 378 NQKIDTIIFDPPRKGLEASIIDKVAELNLKEVVYISCNPSTFARDVKLFSEKGYVLKKLQ 437 Query: 346 LFDQFPYTRHMECGVLLVRK 365 D FP T H+EC V L+ K Sbjct: 438 AVDMFPQTSHIEC-VGLIEK 456 >gi|297583072|ref|YP_003698852.1| TrmA family RNA methyltransferase [Bacillus selenitireducens MLS10] gi|297141529|gb|ADH98286.1| RNA methyltransferase, TrmA family [Bacillus selenitireducens MLS10] Length = 441 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 50/156 (32%), Positives = 80/156 (51%), Gaps = 15/156 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G SL LA+ V VE P+++ A+ N ANH++NV ++ Sbjct: 297 VIDAYCGIGTISLFLAQKARHVYGVESVAPAIDDAKRNAKANHIDNVTFAVGEAETLMPW 356 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330 +++ D D+ I VDPPR G + A + M P I+Y+SCNP +L R Sbjct: 357 W-----YSQGLDPDV-------IVVDPPRKGCETAMLDAMAAMKPERIVYVSCNPATLAR 404 Query: 331 DLSILS-TTHTIERLALFDQFPYTRHMECGVLLVRK 365 D+ LS +T++ + D FP T H+E ++ R+ Sbjct: 405 DMKYLSEKGYTVKEVQPVDMFPQTTHVEAVTVMYRE 440 >gi|148381310|ref|YP_001255851.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum A str. ATCC 3502] gi|153931489|ref|YP_001385686.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum A str. ATCC 19397] gi|153937212|ref|YP_001389092.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum A str. Hall] gi|148290794|emb|CAL84928.1| putative RNA methyltransferase [Clostridium botulinum A str. ATCC 3502] gi|152927533|gb|ABS33033.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum A str. ATCC 19397] gi|152933126|gb|ABS38625.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum A str. Hall] Length = 461 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 48/156 (30%), Positives = 76/156 (48%), Gaps = 15/156 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + + YCG G SL L++ +V VEI K +++ A+ N N ++N + S+E Sbjct: 316 VFDAYCGTGTISLFLSQKAKKVYGVEIIKEAIDNAKDNAKENKIDNAEFFVGKSEEV--- 372 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330 + D+ + + VDPPR G + + + A I+Y+SC+P +L R Sbjct: 373 ---------IPDLIDKGIKADVVVVDPPRKGCEKTLLEAIAATKPKRIVYVSCDPGTLAR 423 Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVRK 365 DL IL+ + + D FP T H+E VLL RK Sbjct: 424 DLGILNGLGYETREVQPVDMFPQTSHVETCVLLQRK 459 >gi|261418678|ref|YP_003252360.1| RNA methyltransferase, TrmA family [Geobacillus sp. Y412MC61] gi|319765493|ref|YP_004130994.1| RNA methyltransferase, TrmA family [Geobacillus sp. Y412MC52] gi|261375135|gb|ACX77878.1| RNA methyltransferase, TrmA family [Geobacillus sp. Y412MC61] gi|317110359|gb|ADU92851.1| RNA methyltransferase, TrmA family [Geobacillus sp. Y412MC52] Length = 457 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 51/150 (34%), Positives = 74/150 (49%), Gaps = 17/150 (11%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G SL LAR V VEI ++E A+ N N + NV ++++ Sbjct: 314 VMDAYCGIGTISLFLARKAKHVYGVEIVPEAIEDAKRNAELNGIRNVTFEVGAAEDVIPR 373 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330 +E R + VDPPR G D + + + A P ++Y+SCNP +L R Sbjct: 374 WYQE------------GIRADCLVVDPPRKGCDASLLETIIAMKPPRVVYVSCNPATLAR 421 Query: 331 DLSIL--STTHTIERLALFDQFPYTRHMEC 358 DL IL TIE + D FP+T H+EC Sbjct: 422 DLRILEDGGYETIE-VQPVDMFPHTAHVEC 450 >gi|22536596|ref|NP_687447.1| RNA methyltransferase [Streptococcus agalactiae 2603V/R] gi|77411313|ref|ZP_00787662.1| RNA methyltransferase, TrmA family [Streptococcus agalactiae CJB111] gi|50401577|sp|Q8E1E4|Y413_STRA5 RecName: Full=Uncharacterized RNA methyltransferase SAG0413 gi|22533432|gb|AAM99319.1|AE014210_9 RNA methyltransferase, TrmA family [Streptococcus agalactiae 2603V/R] gi|77162649|gb|EAO73611.1| RNA methyltransferase, TrmA family [Streptococcus agalactiae CJB111] Length = 451 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 94/383 (24%), Positives = 160/383 (41%), Gaps = 46/383 (12%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHDGDDLYHI 61 QY++QL K D +RQ ++ F+ + I SEP HYR + +F + G ++ Sbjct: 88 QYDKQLEFKTDVIRQALMKFKPEGYENYEIRKTIGMSEPEHYRAKLQFQVRSFGGNVKAG 147 Query: 62 MFDQQTKERMRI-DYFMPGSL---LINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQA 117 ++ Q T + I D + SL +IN + E++ +L K+ + + + QA Sbjct: 148 LYAQGTHRLIDIKDCLVQDSLTQEMINRVA-ELLGKYKLPIYNERKIAGVRTVMIRRAQA 206 Query: 118 I--VTLIY---HRL-LDDAWRECAIRLRDALHARKYQIQLIGRANK------TKICLDRD 165 V LI+ RL DD E +R+ + + + T++ ++ Sbjct: 207 SGEVQLIFITSKRLDFDDVVIEL---VREFPELKTVAVNINASKTSDIYGQITEVIWGQE 263 Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAG-INVHMLEWVLAATKGIQGDLLELYCGNGNFS 224 ++E + G +L R +F Q N + E V A DL++ YCG G Sbjct: 264 SINEEVLDYGFSLSPR----AFYQLNPKQTQILYSEAVKALDVKEDDDLIDAYCGVGTIG 319 Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284 L A V ++I +++ A+ N N +++ E Sbjct: 320 LAFAGKVKSVRGMDIIPEAIQDAKENALYMGFTNTHYEAGKAEDIIPRWYSE-------- 371 Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILSTTHTIE 342 +R + VDPPR+GLDD + + P ++Y+SCN +L RDL L+ + + Sbjct: 372 ----GFRANALIVDPPRTGLDDKLLNTILKMPPEKMVYVSCNTSTLARDLVTLTKVYHVH 427 Query: 343 RLALFDQFPYTRHMECGVLLVRK 365 + D FP+T E V L RK Sbjct: 428 YIQSVDMFPHTARTEAVVKLQRK 450 >gi|228919350|ref|ZP_04082719.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228840286|gb|EEM85558.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 459 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 85/381 (22%), Positives = 165/381 (43%), Gaps = 42/381 (11%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQ------IFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63 Y++QL +K D + Q + L+ + P HYR +++ + + + ++ Sbjct: 96 YKEQLNQKRDIVVQAFQKYMNNGLEEKIRPTLGMENPWHYRNKSQLQVGRKDEKVITGLY 155 Query: 64 DQQTKERMRIDYFM-------PGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTS-QSD 115 Q + + + I + M + ++ ++ ++ +I E + + I T+ Q+ Sbjct: 156 KQNSHQLIDIAHCMIQHKATNEATKVVRRILEKLNVSIYNEKKQKGLVRTIVTRTAVQTG 215 Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175 + VTLI + + ++ + A K +Q + + I + D+ +AG Sbjct: 216 EVQVTLITTKEELPNKEQFIAEVQKQMPAVKSIMQNVNWRKTSVI-----FGDKTFKLAG 270 Query: 176 RTLIYRQIEN--------SFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGNGNFSLV 226 + +I + + +F Q N V + E AA +++ YCG G L Sbjct: 271 KEVIQETLGDLSFELSARAFFQLNPEQTVVLYNEAKKAAALTGNEKIVDAYCGVGTIGLW 330 Query: 227 LARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDID 286 LA V +++ ++ AR N + N K ++++ +E Sbjct: 331 LANDAAEVRGMDVIPEAIADARKNAKRHGFTNTKYEAGKAEQWLPKWVKE---------- 380 Query: 287 IHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCRDLSILSTTHTIERL 344 +R I VDPPR+G DD + +++ P ++Y+SCNP SL RD+ +L ++ +E + Sbjct: 381 --GWRPDVIVVDPPRTGCDDKLLETILKVKPKQVVYVSCNPSSLARDVQVLMKSYEVEYV 438 Query: 345 ALFDQFPYTRHMECGVLLVRK 365 D FP+T H+E V LVRK Sbjct: 439 QPVDMFPHTAHVENVVKLVRK 459 >gi|46447178|ref|YP_008543.1| putative rRNA methyltransferse [Candidatus Protochlamydia amoebophila UWE25] gi|51316628|sp|Q6MAY1|Y1544_PARUW RecName: Full=Uncharacterized RNA methyltransferase pc1544 gi|46400819|emb|CAF24268.1| putative rRNA methyltransferse [Candidatus Protochlamydia amoebophila UWE25] Length = 442 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 58/208 (27%), Positives = 100/208 (48%), Gaps = 20/208 (9%) Query: 165 DYVDERLTV-----AGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYC 218 D++ E+L + A +TL +R ++F QPN + L A + +LYC Sbjct: 244 DHIREKLYLPDFNEAIQTLNFRISPSAFFQPNTEQAEKLYSQALKLADLSASHVVYDLYC 303 Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278 G G + A++ V+ +E+++ SV AR N+ N ++NV I + +A+ +E Sbjct: 304 GTGTLGICSAKYVKEVIGIELSRESVLDARENVKENGLSNVTIKSGDVGQVLEALSQE-- 361 Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLS-IL 335 +S + + VDPPR GLD + + P ++YISCNP + +L ++ Sbjct: 362 ---------NSLKPDVVMVDPPRIGLDAKAIKHILDLKAPKLVYISCNPKTQVMNLGPLI 412 Query: 336 STTHTIERLALFDQFPYTRHMECGVLLV 363 + ++ + DQFP T H+E LL Sbjct: 413 DGGYQLQIVQPVDQFPQTVHVENITLLT 440 >gi|313905584|ref|ZP_07838946.1| Methyltransferase type 11 [Eubacterium cellulosolvens 6] gi|313469531|gb|EFR64871.1| Methyltransferase type 11 [Eubacterium cellulosolvens 6] Length = 570 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 70/231 (30%), Positives = 104/231 (45%), Gaps = 31/231 (13%) Query: 142 LHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEW 201 LH + + + + T I RDY E L L ++ SF Q N+ E Sbjct: 335 LHTVNDSLADVVQNDHTDILAGRDYFYEELL----GLKFKITPFSFFQTNS----KGAEV 386 Query: 202 VLAATKGIQGDL-----LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV 256 + + GD+ +LY G G + +LA V+ VEI + +VEAA+ N A N + Sbjct: 387 LYRTAREFLGDIDNQTVFDLYSGTGTIAQMLAPVAKNVVGVEIVEEAVEAAKENAALNGL 446 Query: 257 NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY- 315 +N + + + LK +D + + TI +DPPR G+ + + AY Sbjct: 447 DNCRFI---------------AGDVLKVLDELTEKPDTIVLDPPRDGIHPKALPKIVAYG 491 Query: 316 -PHILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 I+YISC P SL RDL L + +ER+ D FP T H+E LL R Sbjct: 492 VEKIIYISCKPSSLARDLPYFLRHGYRLERMCCVDMFPGTVHVEVVSLLQR 542 >gi|312129534|ref|YP_003996874.1| 23S rRNA m(5)u-1939 methyltransferase [Leadbetterella byssophila DSM 17132] gi|311906080|gb|ADQ16521.1| 23S rRNA m(5)U-1939 methyltransferase [Leadbetterella byssophila DSM 17132] Length = 467 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 58/191 (30%), Positives = 93/191 (48%), Gaps = 14/191 (7%) Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFSLVLARHFDRVLA 236 L +R SF Q N+ + + V + + DL+ +LY G G + LA+ V+ Sbjct: 287 LKFRIGVKSFYQTNSEQAYELYKKVREYAQIQENDLVYDLYTGTGTIANFLAKGAKHVVG 346 Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296 VE +P+VE AR N N + N + + + + E + R + Sbjct: 347 VEYIEPAVEDARINSQINGITNTTFF---AGDMAKVLNEE--------FVAQNGRPDVVI 395 Query: 297 VDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTR 354 DPPR+G+D + +++ P I+Y+SCNP + RDL ILS + +E +A D FP+T Sbjct: 396 TDPPRAGMDKSVCEVLLKVAPRRIVYVSCNPGTQARDLEILSEKYEVEAVAPVDMFPHTF 455 Query: 355 HMECGVLLVRK 365 H+E V L+ K Sbjct: 456 HVENIVSLILK 466 >gi|182412677|ref|YP_001817743.1| RNA methyltransferase [Opitutus terrae PB90-1] gi|177839891|gb|ACB74143.1| RNA methyltransferase, TrmA family [Opitutus terrae PB90-1] Length = 493 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 50/155 (32%), Positives = 79/155 (50%), Gaps = 16/155 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L++ YCG+G F+L A F+RV VEI++ SV AR N AAN + N + + Sbjct: 349 LVDAYCGSGLFALASASAFERVAGVEISESSVRFARENAAANGITNASFLAADAAAIFAG 408 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCR 330 + F + + + +DPPR G D + + A+ ++Y+SC+P + R Sbjct: 409 L----AFPAAESV---------VVIDPPRKGCDREFLQQLFAFGPRAVVYVSCDPATQMR 455 Query: 331 DL-SILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 DL L+ + + + FD FP TRH+EC + L R Sbjct: 456 DLRDFLAAGYELIAVQPFDLFPQTRHLECVITLRR 490 >gi|325913301|ref|ZP_08175669.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners UPII 60-B] gi|325477404|gb|EGC80548.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners UPII 60-B] Length = 448 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 49/155 (31%), Positives = 76/155 (49%), Gaps = 15/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ Y G G L +A+H +VL VEI + +V+ A+ N N +NN + ++E Sbjct: 304 VIDAYSGIGTIGLSVAKHVKKVLGVEIVRDAVKDAKKNAILNGINNAEYFEGKAEELMPQ 363 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCR 330 E + IFVDPPR GL D + V P I+YISCNP ++ R Sbjct: 364 WANE------------GLKTDVIFVDPPRKGLTDTFIKAAVATSPKKIVYISCNPATMIR 411 Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364 DL + + + + + D FP T H+E VL+ + Sbjct: 412 DLQVFQAAGYDFDCIDPVDMFPQTPHVETIVLMSK 446 >gi|223985932|ref|ZP_03635968.1| hypothetical protein HOLDEFILI_03274 [Holdemania filiformis DSM 12042] gi|223962119|gb|EEF66595.1| hypothetical protein HOLDEFILI_03274 [Holdemania filiformis DSM 12042] Length = 458 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 98/380 (25%), Positives = 168/380 (44%), Gaps = 46/380 (12%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMR--AEFHIWHDGDDLYHIMFDQQT 67 Y QL K ++++Q++ + + + +EP YR + A F + G + I +++ + Sbjct: 97 YPAQLDWKKEKVQQLLGRYGRVHDVLGMAEPWAYRNKVIATFSLSKKGKVIAGI-YEEDS 155 Query: 68 KERMRIDYFM---PGSLLINALMIEMMATIRLEP--------LLRAKLFQIDYLTSQSDQ 116 + + P + I A + E+M +R+EP L+R L ++ ++ S + Sbjct: 156 HQLVAYSSCWIQDPIAEKILATVCELMTELRIEPYDEDQRTGLVRHCLIRVGHV---SRE 212 Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVA-G 175 +V L+ + A ++ RLR H I + + T + L ER+ V G Sbjct: 213 VLVCLVCASPIFPARKQLIQRLRQR-HPEITTIVMNVNSRNTSVVLGSQ---ERVLVGTG 268 Query: 176 R------TLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVL 227 + L + SF Q N+ + +L + G +L+ YCG G+ SLV Sbjct: 269 KIQDELCGLKFSIAAKSFYQINS-VQTEVLYGKAMELANLTGKERVLDAYCGIGSISLVA 327 Query: 228 ARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDI 287 A+ V+ VE+ SV A N NH+ N V + F + RE + Sbjct: 328 AKAAKEVVGVEVNPVSVTNAIENARMNHLRNAWFVEADAGLFMEQAAREGQA-------- 379 Query: 288 HSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCRDLSILS-TTHTIERL 344 + +F+DPPR+G D+ + + + P I+YISCNP + RDL L+ + + + Sbjct: 380 ----YDVVFMDPPRAGADERFLKSLCRLNPDRIVYISCNPSTQARDLRHLTHEGYQVRTI 435 Query: 345 ALFDQFPYTRHMECGVLLVR 364 D FP T H+E VLL R Sbjct: 436 VPVDLFPMTSHVETIVLLQR 455 >gi|297620448|ref|YP_003708585.1| 23S rRNA (Uracil-5-)-methyltransferase [Waddlia chondrophila WSU 86-1044] gi|297375749|gb|ADI37579.1| 23S rRNA (Uracil-5-)-methyltransferase [Waddlia chondrophila WSU 86-1044] Length = 482 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 58/201 (28%), Positives = 97/201 (48%), Gaps = 17/201 (8%) Query: 171 LTVAG-RTLIYRQIENSFTQPNA--GINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVL 227 LT G L++ +F QPN ++ L LA Q + +LYCG G + Sbjct: 292 LTEGGLEPLLFHISPAAFFQPNTLQAEKLYSLALELAQISKEQ-VVYDLYCGTGTLGICA 350 Query: 228 ARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDI 287 A+ +V+ VE++ S AR+N N + N+ I+ + + + ++ + F D D+ Sbjct: 351 AKRAKQVVGVELSPESAHDARHNAKENRIENLTILTGAVRRVLEEIKEKELF---PDPDV 407 Query: 288 HSYRFKTIFVDPPRSGLDDATVG--MVQAYPHILYISCNPDSLCRDL-SILSTTHTIERL 344 + VDPPR+GLD + + P I+Y+SCNP + ++ L + ++ + Sbjct: 408 -------VMVDPPRAGLDPHAIKHLLELGPPKIVYVSCNPATQVENVKEFLKDGYVLKAV 460 Query: 345 ALFDQFPYTRHMECGVLLVRK 365 DQFP T H+E VLL +K Sbjct: 461 QPVDQFPQTVHIENIVLLAKK 481 >gi|228989612|ref|ZP_04149596.1| Uncharacterized RNA methyltransferase [Bacillus pseudomycoides DSM 12442] gi|228770149|gb|EEM18729.1| Uncharacterized RNA methyltransferase [Bacillus pseudomycoides DSM 12442] Length = 461 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 51/163 (31%), Positives = 80/163 (49%), Gaps = 18/163 (11%) Query: 208 GIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265 G+ G +++ YCG G L LA V +++ ++E A+ N + N K Sbjct: 310 GLTGKEKIVDAYCGVGTIGLWLANDAAEVRGMDVIPEAIEDAKKNAKRHGFTNTKYEAGK 369 Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA---TVGMVQAYPHILYIS 322 ++++ +E +R I VDPPR+G DD T+ VQ ++Y+S Sbjct: 370 AEQWLPKWVKE------------GWRPDVIVVDPPRTGCDDKLLETILKVQPK-QVVYVS 416 Query: 323 CNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 CNP SL RD+ L ++ +E + D FP+T H+E V LVRK Sbjct: 417 CNPSSLARDVKALMKSYEVEYVQPVDMFPHTAHVENVVRLVRK 459 >gi|227498264|ref|ZP_03928414.1| RNA methyltransferase [Acidaminococcus sp. D21] gi|226903726|gb|EEH89644.1| RNA methyltransferase [Acidaminococcus sp. D21] Length = 460 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 52/165 (31%), Positives = 84/165 (50%), Gaps = 18/165 (10%) Query: 204 AATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK-IV 262 AA +G + ++++LYCG G +L LA+ L +EI P++ AR N NH+ N + I Sbjct: 307 AALEGKE-NVIDLYCGTGTITLFLAQKARHALGIEIVAPAIADARKNARDNHIKNSEFIC 365 Query: 263 RMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILY 320 ++KE +R R + +DPPR+G + + + A ++Y Sbjct: 366 ADAAKELPLLVR-------------DGIRPDVVVLDPPRAGCERPVLDAILAVRPKRVVY 412 Query: 321 ISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364 +SC P SL RD +IL + I ++ D FP+T H+E VL+ R Sbjct: 413 VSCGPASLARDAAILCEGGYNIRQVQPVDMFPHTSHVETVVLMSR 457 >gi|25010521|ref|NP_734916.1| hypothetical protein gbs0448 [Streptococcus agalactiae NEM316] gi|50401579|sp|Q8E6W1|Y448_STRA3 RecName: Full=Uncharacterized RNA methyltransferase gbs0448 gi|23094874|emb|CAD46092.1| Unknown [Streptococcus agalactiae NEM316] Length = 451 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 96/383 (25%), Positives = 161/383 (42%), Gaps = 46/383 (12%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHDGDDLYHI 61 QY++QL K D +RQ ++ F+ + I SEP HYR + +F + G ++ Sbjct: 88 QYDKQLEFKTDVIRQALMKFKPEGYENYEIRKTIGMSEPEHYRAKLQFQVRSFGGNVRAG 147 Query: 62 MFDQQTKERMRI-DYFMPGSL---LINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQA 117 ++ Q T + I D + SL +IN + E++ +L K+ + + + QA Sbjct: 148 LYAQGTHRLIDIKDCLVQDSLTQEMINRVA-ELLGKYKLPIYNERKIAGVRTVMIRRAQA 206 Query: 118 I--VTLIY---HRL-LDDAWRECAIRLRDALHARKYQIQLIGRANK------TKICLDRD 165 V LI+ RL DD E +R+ + + + T++ ++ Sbjct: 207 SGEVQLIFITSKRLDFDDVVIEL---VREFPELKTVAVNINASKTSDIYGQITEVIWGQE 263 Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAG-INVHMLEWVLAATKGIQGDLLELYCGNGNFS 224 ++E + G +L R +F Q N + E V A DL++ YCG G Sbjct: 264 SINEEVLDYGFSLSPR----AFYQLNPKQTQILYSEAVKALDVKEDDDLIDAYCGVGTIG 319 Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284 L A V ++I +++ A+ N N +A + E R Sbjct: 320 LAFAGKVKSVRGMDIIPEAIQDAKENALHMGFTNTHY---------EAGKAEDVIPRWYS 370 Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILSTTHTIE 342 +R + VDPPR+GLDD + + P ++Y+SCN +L RDL L+ + + Sbjct: 371 ---EGFRANALIVDPPRTGLDDKLLNTILKMPPEKMVYVSCNTSTLARDLVTLTKVYHVH 427 Query: 343 RLALFDQFPYTRHMECGVLLVRK 365 + D FP+T E V L RK Sbjct: 428 YIQSVDMFPHTARTEAVVKLQRK 450 >gi|120555154|ref|YP_959505.1| 23S rRNA 5-methyluridine methyltransferase [Marinobacter aquaeolei VT8] gi|143581341|sp|A1U2U9|RUMA_MARAV RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|120325003|gb|ABM19318.1| 23S rRNA m(5)U-1939 methyltransferase [Marinobacter aquaeolei VT8] Length = 449 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 62/186 (33%), Positives = 92/186 (49%), Gaps = 25/186 (13%) Query: 187 FTQPNAGINVHML----EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 FTQ NAGIN +M+ EW L G + +L+L+CG GNF+L LAR +V+ VE Sbjct: 278 FTQVNAGINRNMVHRAVEW-LDVQPGER--VLDLFCGLGNFTLPLARKGGQVVGVEGDDA 334 Query: 243 SVEAARYNIAANHVNNVKIVRMS-SKEFT-QAMRREREFNRLKDIDIHSYRFKTIFVDPP 300 V R N N ++NV+ +FT Q+ +E F I +DPP Sbjct: 335 MVVRGRENARLNDLSNVEFHGADLHGDFTGQSWAKE--------------GFDKILIDPP 380 Query: 301 RSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMEC 358 RSG ++ + I+Y+SCNP +L RD ++ + + + + D FP+T H+E Sbjct: 381 RSGAEEICKYLTAFGANRIVYVSCNPATLARDAGVMVRNGYRLVQAGVMDMFPHTTHVES 440 Query: 359 GVLLVR 364 L R Sbjct: 441 IALFER 446 >gi|195496369|ref|XP_002095665.1| GE22531 [Drosophila yakuba] gi|194181766|gb|EDW95377.1| GE22531 [Drosophila yakuba] Length = 615 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 48/168 (28%), Positives = 85/168 (50%), Gaps = 20/168 (11%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +L++ CG G +L A+H +V+ VEI +++ A +N AN + N K ++ +F ++ Sbjct: 419 MLDICCGTGTITLAFAKHCKKVMGVEIVPDAIKDAEFNAEANGIKNAKFFTGNADDFIKS 478 Query: 273 MRREREFNRL--KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ---AYPHILYISCNPDS 327 M RE +++ K +D+ VDPPR+GL ++ ++ A ++Y+SCNP S Sbjct: 479 MVREALYDQEPGKPLDL------IAVVDPPRAGLHHRSIAAIRSADAVNRLVYVSCNPHS 532 Query: 328 LCRDLSILSTTHTIE---------RLALFDQFPYTRHMECGVLLVRKP 366 R+ L+ + + D FP+T H E +L R+P Sbjct: 533 AKRNFIELARPESKQYKGEPFYPKSAVAVDMFPHTMHTELVILFEREP 580 >gi|326624695|gb|EGE31040.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 437 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 57/185 (30%), Positives = 91/185 (49%), Gaps = 23/185 (12%) Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 F Q N +N M LEW+ + +L+L+CG GNF+L LA V+ VE Sbjct: 268 FIQVNEAVNQQMVARALEWLDVRA---EDRVLDLFCGMGNFTLPLATRAASVIGVEGVPA 324 Query: 243 SVEAARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301 VE R N N ++NV + +E T+ + F++ + +DP R Sbjct: 325 LVEKGRENAIRNGLHNVTFFHENLEEEVTKQPWAKNGFDK-------------VLLDPAR 371 Query: 302 SGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHMECG 359 +G +++ P I+Y+SCNP +L RD ++++ + + RLA+ D FP+T H+E Sbjct: 372 AGATGVMRHIIKLKPIRIVYVSCNPATLARDSEALVNAGYEVTRLAMLDMFPHTGHLESM 431 Query: 360 VLLVR 364 VL R Sbjct: 432 VLFER 436 >gi|330966580|gb|EGH66840.1| 23S rRNA m(5)U1939 methyltransferase [Pseudomonas syringae pv. actinidiae str. M302091] Length = 451 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 56/185 (30%), Positives = 88/185 (47%), Gaps = 23/185 (12%) Query: 185 NSFTQPNAGINVHMLE----WVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240 F Q NA +N M+E W+ A +++L+CG GNF+L LA V+AVE Sbjct: 279 GDFIQVNAAVNTAMIEQALHWLAPAA---DERVMDLFCGLGNFALPLASLAKEVVAVEGV 335 Query: 241 KPSVEAARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299 VE A N +N ++NV+ + S+ T A D + F + +DP Sbjct: 336 ATMVERAAVNAMSNDLHNVRFFQADLSQPLTHA-------------DWAAEGFSAVLLDP 382 Query: 300 PRSGLDDATVGMVQAYPH-ILYISCNPDSLCRD-LSILSTTHTIERLALFDQFPYTRHME 357 PR G + + + +LY+SCNP +L RD + ++ + ++R + D FP T H+E Sbjct: 383 PRDGAFEVVRQIRKTGAQRLLYVSCNPATLARDTVELVKQGYRLKRAGILDMFPQTAHVE 442 Query: 358 CGVLL 362 L Sbjct: 443 AMALF 447 >gi|265753522|ref|ZP_06088877.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides sp. 3_1_33FAA] gi|263235236|gb|EEZ20760.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides sp. 3_1_33FAA] Length = 473 Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 62/207 (29%), Positives = 99/207 (47%), Gaps = 24/207 (11%) Query: 171 LTVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGDLL--ELYCGN 220 + G I+ ++E SF Q N+G + L V G+ G+ L +LY G Sbjct: 278 MVFKGNNHIFEEMEGLRFKIGAKSFYQTNSG-QAYNLYKVARNFAGLTGNELVYDLYTGT 336 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G + ++R +V+ +E ++E A+ N A N ++N K+ +EF Sbjct: 337 GTIANFVSRQAKKVIGIEYVPEAIEDAKVNSAINGIDNTLFYAGDMKDILT-----QEF- 390 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGL-DDATVGMVQAYPH-ILYISCNPDSLCRDLSILSTT 338 I H R I DPPR+G+ DD ++ A P I+Y+SCNP + RDLS+L Sbjct: 391 ----ISQHG-RPDVIITDPPRAGMHDDVINTILFAEPQRIVYVSCNPATQARDLSLLDAK 445 Query: 339 HTIERLALFDQFPYTRHMECGVLLVRK 365 + + + D FP+T H+E VLL ++ Sbjct: 446 YKVMAVQPVDMFPHTHHVENVVLLEKR 472 >gi|331702034|ref|YP_004398993.1| RNA methyltransferase, TrmA family [Lactobacillus buchneri NRRL B-30929] gi|329129377|gb|AEB73930.1| RNA methyltransferase, TrmA family [Lactobacillus buchneri NRRL B-30929] Length = 456 Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 55/156 (35%), Positives = 83/156 (53%), Gaps = 16/156 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G SL +AR +V VEI +VE A+ N N++ NV V +SK TQ Sbjct: 311 VIDAYCGIGTISLSMARVAKQVYGVEIVPEAVEDAKKNAKLNNLTNVHFV--ASKAETQ- 367 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330 M + +E D+ I VDPPR GLD + + +V+ P ++Y+SCNP +L R Sbjct: 368 MAKWQEDGLKPDV---------ISVDPPRKGLDASLIDSVVKMQPKRVVYVSCNPATLAR 418 Query: 331 DLSILSTT--HTIERLALFDQFPYTRHMECGVLLVR 364 D+ + + + + DQFP T H+E +L R Sbjct: 419 DVKLFTEQGYQVNQPIQPVDQFPQTVHVESITVLER 454 >gi|42759862|ref|NP_012982.2| Trm2p [Saccharomyces cerevisiae S288c] gi|110825750|sp|P33753|TRM2_YEAST RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=Transfer RNA methyltransferase 2; AltName: Full=tRNA(M-5-U54)-methyltransferase gi|285813310|tpg|DAA09207.1| TPA: Trm2p [Saccharomyces cerevisiae S288c] Length = 639 Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 51/160 (31%), Positives = 80/160 (50%), Gaps = 21/160 (13%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L++ YCG+G FS+ ++ D+V+ VEI+ SV A N AN V N + + +++ ++ Sbjct: 492 LVDAYCGSGLFSICSSKGVDKVIGVEISADSVSFAEKNAKANGVENCRFIVGKAEKLFES 551 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330 ID S ++ +DPPR G D+ + + AY I+YISCN S R Sbjct: 552 ------------IDTPSEN-TSVILDPPRKGCDELFLKQLAAYNPAKIIYISCNVHSQAR 598 Query: 331 DLSIL------STTHTIERLALFDQFPYTRHMECGVLLVR 364 D+ + H IE + FD FP T H+E ++ R Sbjct: 599 DVEYFLKETENGSAHQIESIRGFDFFPQTHHVESVCIMKR 638 >gi|114046682|ref|YP_737232.1| 23S rRNA 5-methyluridine methyltransferase [Shewanella sp. MR-7] gi|113888124|gb|ABI42175.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Shewanella sp. MR-7] Length = 463 Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 59/184 (32%), Positives = 92/184 (50%), Gaps = 22/184 (11%) Query: 185 NSFTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240 +F Q NA IN M L+W LA G + +L+L+CG GNFSL LA+ V+ VE Sbjct: 292 GNFVQVNAQINKAMVAQALDW-LAPQPGER--ILDLFCGMGNFSLPLAKLGAEVIGVEGV 348 Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300 V AR N AAN ++N+ + + + E ++ + +DP Sbjct: 349 PEMVSQARENAAANGLSNLTFYH---GDLSADLSCEPWMGKI----------DKLLLDPA 395 Query: 301 RSGLDDATVGMVQAYP-HILYISCNPDSLCRDLSI-LSTTHTIERLALFDQFPYTRHMEC 358 R+G ++ + + P ++Y+SCNP SL RD ++ L + +++L L D FP T H+E Sbjct: 396 RAGAFESLQWLKKMKPRQVVYVSCNPASLARDSAVLLERGYKLQKLGLIDMFPQTHHIEA 455 Query: 359 GVLL 362 L Sbjct: 456 MALF 459 >gi|315230888|ref|YP_004071324.1| TrmA-like RNA methyltransferase [Thermococcus barophilus MP] gi|315183916|gb|ADT84101.1| TrmA-like RNA methyltransferase [Thermococcus barophilus MP] Length = 420 Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 81/278 (29%), Positives = 129/278 (46%), Gaps = 40/278 (14%) Query: 100 LRAKLFQIDYLT----SQSDQAIVTLIYH----RLLDDAWRECAIRLRDALHARKYQIQL 151 L+ K + YL+ +D+ +++LI H L +A+R+ D+L+ + Sbjct: 170 LKRKRGDVHYLSVREGKSTDEVMISLIAHIKPNEKLAEAFRDY-FYFADSLYWSFKADKR 228 Query: 152 IGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGI-Q 210 + K+ + Y+ ER+ ++Y NSF Q N+ + L +L A +G + Sbjct: 229 DDPKGEPKLIAGKPYISERIG----DVVYLIHPNSFFQANS----YALPLLLKAAEGFTE 280 Query: 211 GD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269 G+ +L+LY G G F + LA+ +V VE +VE A N N V+ V R+ E Sbjct: 281 GEKILDLYSGLGTFGIWLAKRGFKVEGVEANPFAVEMANKNAKLNGVDAV--FRLGKAEE 338 Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA-YPHILYISCNPDSL 328 T + D D T VDPPR GL + + ++ +I+Y+SCNP + Sbjct: 339 TA----------IGDYD-------TAVVDPPRKGLKETAELLAKSNVENIIYVSCNPKAF 381 Query: 329 CRDL-SILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 D + L + IE L D FP+T H+E V LVRK Sbjct: 382 KLDYENHLKKAYQIEDALLIDMFPHTPHVEAVVKLVRK 419 >gi|228995800|ref|ZP_04155460.1| Uncharacterized RNA methyltransferase [Bacillus mycoides Rock3-17] gi|229003420|ref|ZP_04161240.1| Uncharacterized RNA methyltransferase [Bacillus mycoides Rock1-4] gi|228757798|gb|EEM07023.1| Uncharacterized RNA methyltransferase [Bacillus mycoides Rock1-4] gi|228763961|gb|EEM12848.1| Uncharacterized RNA methyltransferase [Bacillus mycoides Rock3-17] Length = 461 Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 49/156 (31%), Positives = 77/156 (49%), Gaps = 16/156 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G L LA V +++ ++E A+ N + N K ++++ Sbjct: 317 IVDAYCGVGTIGLWLANDAAEVRGMDVIPEAIEDAKKNAKRHGFTNTKYEAGKAEQWLPK 376 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA---TVGMVQAYPHILYISCNPDSLC 329 +E +R I VDPPR+G DD T+ VQ ++Y+SCNP SL Sbjct: 377 WVKE------------GWRPDVIVVDPPRTGCDDKLLETILKVQPK-QVVYVSCNPSSLA 423 Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 RD+ L ++ +E + D FP+T H+E V LVRK Sbjct: 424 RDVKALMKSYEVEYVQPVDMFPHTAHVENVVRLVRK 459 >gi|16769886|gb|AAL29162.1| SD08036p [Drosophila melanogaster] Length = 615 Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 48/168 (28%), Positives = 85/168 (50%), Gaps = 20/168 (11%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +L++ CG G +L A+H +V+ VEI +++ A +N AN + N K ++ +F ++ Sbjct: 419 MLDICCGTGTITLAFAKHCKKVMGVEIVPDAIKDAEFNAEANGIKNAKFFTGNADDFIKS 478 Query: 273 MRREREFNRL--KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ---AYPHILYISCNPDS 327 M RE +++ K +D+ VDPPR+GL ++ ++ A ++Y+SCNP S Sbjct: 479 MVREALYDQEPGKPLDL------IAVVDPPRAGLHHRSIAAIRSADAINRLVYVSCNPHS 532 Query: 328 LCRDLSILSTTHTIE---------RLALFDQFPYTRHMECGVLLVRKP 366 R+ L+ + + D FP+T H E +L R+P Sbjct: 533 AKRNFIELARPESKQYKGEPFYPKSAVAVDMFPHTMHTELVILFEREP 580 >gi|212693125|ref|ZP_03301253.1| hypothetical protein BACDOR_02632 [Bacteroides dorei DSM 17855] gi|212664230|gb|EEB24802.1| hypothetical protein BACDOR_02632 [Bacteroides dorei DSM 17855] Length = 473 Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 59/184 (32%), Positives = 92/184 (50%), Gaps = 16/184 (8%) Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDLL--ELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 SF Q N+G + L V G+ G+ L +LY G G + ++R +V+ +E + Sbjct: 301 SFYQTNSG-QAYNLYKVARNFAGLTGNELVYDLYTGTGTIANFVSRQAKKVIGIEYVPEA 359 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 +E A+ N A N ++N K+ +EF I H R I DPPR+G Sbjct: 360 IEDAKVNSAINGIDNTLFYAGDMKDILT-----QEF-----ISQHG-RPDVIITDPPRAG 408 Query: 304 L-DDATVGMVQAYPH-ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVL 361 + DD ++ A P I+Y+SCNP + RDLS+L + + + D FP+T H+E VL Sbjct: 409 MHDDVINTILFAEPQRIVYVSCNPATQARDLSLLDAKYKVMAVQPVDMFPHTHHVENVVL 468 Query: 362 LVRK 365 L ++ Sbjct: 469 LEKR 472 >gi|116334207|ref|YP_795734.1| tRNA (uracil-5-)-methyltransferase related enzyme [Lactobacillus brevis ATCC 367] gi|116099554|gb|ABJ64703.1| tRNA (uracil-5-)-methyltransferase related enzyme [Lactobacillus brevis ATCC 367] Length = 457 Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 51/163 (31%), Positives = 82/163 (50%), Gaps = 18/163 (11%) Query: 208 GIQG--DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265 G+ G +++ YCG G SL LA+H +V VEI ++E A+ N NH++NV Sbjct: 304 GLTGAETVIDAYCGIGTISLALAKHAKQVYGVEIVPEAIEDAKVNAQKNHLSNV------ 357 Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV--GMVQAYPHILYISC 323 T A+ + +++ + + I VDPPR GL ++ + A ++Y+SC Sbjct: 358 ----TFAVNKAE--DQMAEWQAAGIKPDVIVVDPPRKGLAESLIDSAAKMAPKKVVYVSC 411 Query: 324 NPDSLCRDLSILSTT--HTIERLALFDQFPYTRHMECGVLLVR 364 NP +L RD++ + H + DQFP T H+E +L R Sbjct: 412 NPATLVRDVARFTELGYHVDGPVQPVDQFPQTPHVESVTVLKR 454 >gi|260437712|ref|ZP_05791528.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Butyrivibrio crossotus DSM 2876] gi|292809735|gb|EFF68940.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Butyrivibrio crossotus DSM 2876] Length = 461 Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 98/395 (24%), Positives = 168/395 (42%), Gaps = 56/395 (14%) Query: 4 TLLIDQYEQQLAEKVDRLRQMML------AFQVPNLQIFRSEPIHYRMRAEFHIWHDGD- 56 TL+ YE+QL K + ++ +VP + I P YR +A+F + D D Sbjct: 83 TLMAMSYERQLEFKRHLIENNLIRIGGLSGIEVPPV-IGMDNPYRYRNKAQFPVGTDKDG 141 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKLF 105 ++ + +T + + + GS + ++ E+ A + + L+R L Sbjct: 142 NIVMGFYAGRTHSIIPNEDCLIGSDINAGILAEIKAFMIMNHIKSYDENSHSGLVRHILI 201 Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR- 164 + + T Q +V + +D + + L + + I + KT + L + Sbjct: 202 RTGFTTGQIMVCVVINGSNIPKEDELVKKLLALSFSNERKIASIMVNINREKTNVILGKK 261 Query: 165 -----------DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD- 212 DY+ E + YR SF Q N + L + G+ G+ Sbjct: 262 CRVLYGTPYIEDYIGE--------VKYRIQPLSFYQVNP-VQTEKLYNIALDYAGLTGNE 312 Query: 213 -LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271 + +LYCG G SL LA+ +V VEI ++E A N N ++N EF Sbjct: 313 TVWDLYCGIGTISLFLAKKAKKVYGVEIVPEAIEDAVTNAKLNGIDNA--------EFYV 364 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLC 329 E + ++H+ I VDPPR G D+A +G MV+ P I+Y+SC+ +L Sbjct: 365 GKAEEILPEKYDKENVHA---DVIVVDPPRKGCDEALLGTMVKMAPERIVYVSCDSATLA 421 Query: 330 RDLSIL-STTHTIERLALFDQFPYTRHMECGVLLV 363 RDL L + ++++ DQF ++ H+E VL+V Sbjct: 422 RDLKFLVGNGYEVKKVQGVDQFCHSGHVETVVLMV 456 >gi|237798965|ref|ZP_04587426.1| 23S rRNA m(5)U1939 methyltransferase [Pseudomonas syringae pv. oryzae str. 1_6] gi|237806201|ref|ZP_04592905.1| 23S rRNA m(5)U1939 methyltransferase [Pseudomonas syringae pv. oryzae str. 1_6] gi|331021819|gb|EGI01876.1| 23S rRNA m(5)U1939 methyltransferase [Pseudomonas syringae pv. oryzae str. 1_6] gi|331027314|gb|EGI07369.1| 23S rRNA m(5)U1939 methyltransferase [Pseudomonas syringae pv. oryzae str. 1_6] Length = 451 Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 56/185 (30%), Positives = 88/185 (47%), Gaps = 23/185 (12%) Query: 185 NSFTQPNAGINVHMLE----WVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240 F Q NA +N M+E W+ A +++L+CG GNF+L LA V+AVE Sbjct: 279 GDFIQVNAAVNTAMIEQALQWLAPAADE---RVMDLFCGLGNFALPLAGLAKEVVAVEGV 335 Query: 241 KPSVEAARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299 VE A N +N ++NV+ + S+ T A D + F + +DP Sbjct: 336 ATMVERAAVNAMSNDLHNVQFFQADLSQPLTHA-------------DWAAEGFSAVLLDP 382 Query: 300 PRSGLDDATVGMVQAYP-HILYISCNPDSLCRD-LSILSTTHTIERLALFDQFPYTRHME 357 PR G + + + +LY+SCNP +L RD + ++ + ++R + D FP T H+E Sbjct: 383 PRDGAFEVVRQISKTGARRLLYVSCNPATLARDTVELIRQGYRLKRAGILDMFPQTAHVE 442 Query: 358 CGVLL 362 L Sbjct: 443 AMALF 447 >gi|201065699|gb|ACH92259.1| FI05218p [Drosophila melanogaster] Length = 640 Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 48/168 (28%), Positives = 85/168 (50%), Gaps = 20/168 (11%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +L++ CG G +L A+H +V+ VEI +++ A +N AN + N K ++ +F ++ Sbjct: 444 MLDICCGTGTITLAFAKHCKKVMGVEIVPDAIKDAEFNAEANGIKNAKFFTGNADDFIKS 503 Query: 273 MRREREFNRL--KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ---AYPHILYISCNPDS 327 M RE +++ K +D+ VDPPR+GL ++ ++ A ++Y+SCNP S Sbjct: 504 MVREALYDQEPGKPLDL------IAVVDPPRAGLHHRSIAAIRSADAINRLVYVSCNPHS 557 Query: 328 LCRDLSILSTTHTIE---------RLALFDQFPYTRHMECGVLLVRKP 366 R+ L+ + + D FP+T H E +L R+P Sbjct: 558 AKRNFIELARPESKQYKGEPFYPKSAVAVDMFPHTMHTELVILFEREP 605 >gi|198244789|ref|YP_002216931.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|197939305|gb|ACH76638.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] Length = 431 Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 57/185 (30%), Positives = 91/185 (49%), Gaps = 23/185 (12%) Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 F Q N +N M LEW+ + +L+L+CG GNF+L LA V+ VE Sbjct: 262 FIQVNEAVNQQMVARALEWLDVRA---EDRVLDLFCGMGNFTLPLATRAASVIGVEGVPA 318 Query: 243 SVEAARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301 VE R N N ++NV + +E T+ + F++ + +DP R Sbjct: 319 LVEKGRENAIRNGLHNVTFFHENLEEEVTKQPWAKNGFDK-------------VLLDPAR 365 Query: 302 SGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHMECG 359 +G +++ P I+Y+SCNP +L RD ++++ + + RLA+ D FP+T H+E Sbjct: 366 AGATGVMRHIIKLKPIRIVYVSCNPATLARDSEALVNAGYEVTRLAMLDMFPHTGHLESM 425 Query: 360 VLLVR 364 VL R Sbjct: 426 VLFER 430 >gi|114562226|ref|YP_749739.1| 23S rRNA 5-methyluridine methyltransferase [Shewanella frigidimarina NCIMB 400] gi|122300475|sp|Q086B4|RUMA_SHEFN RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|114333519|gb|ABI70901.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Shewanella frigidimarina NCIMB 400] Length = 455 Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 59/183 (32%), Positives = 91/183 (49%), Gaps = 20/183 (10%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 +F Q N IN M++ + G+ +L+L+CG GNFSL LA V+ VE Sbjct: 284 GNFVQVNGAINQAMVDQAIEWLDPQSGERILDLFCGVGNFSLPLALKAAEVIGVEGVPEM 343 Query: 244 VEAARYNIAANHVNNVKI--VRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301 V+ A+ N N ++NV +S+ TQ L ID + +DP R Sbjct: 344 VQQAKQNAIDNQLDNVTFYHADLSADLSTQTW--------LGKID-------KLLLDPAR 388 Query: 302 SGLDDATVGMVQAYP-HILYISCNPDSLCRDLSI-LSTTHTIERLALFDQFPYTRHMECG 359 +G ++ + + P ++Y+SCNP SL RD S+ L++ + I ++ L D FP T H+E Sbjct: 389 AGAFESLQWLQKMQPKKVVYVSCNPASLARDSSVLLASGYRIAQVGLVDMFPQTHHIEAM 448 Query: 360 VLL 362 VL Sbjct: 449 VLF 451 >gi|237755943|ref|ZP_04584532.1| 23S rRNA (uracil-5-)-methyltransferase [Sulfurihydrogenibium yellowstonense SS-5] gi|237691892|gb|EEP60911.1| 23S rRNA (uracil-5-)-methyltransferase [Sulfurihydrogenibium yellowstonense SS-5] Length = 419 Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 92/383 (24%), Positives = 165/383 (43%), Gaps = 72/383 (18%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFR----SEPIHYRMRAEFHIWHDGDDLYHIMFDQ 65 YE QL K + L+ +L +I + EP YR +A+ DG +L + + Sbjct: 81 YENQLLLKKEILKDQLLRIGKIETEIEKIIPSKEPFRYRNKAQLKF--DGKNLG--FYKK 136 Query: 66 QTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVT----- 120 + + + +DY L+++ L PL K F I Y S+ I + Sbjct: 137 DSNDLVNVDY---------CLLLKEDIEKLLNPL---KKFLIKYAIMPSNIHIFSNTKEE 184 Query: 121 -LIYHRLLDDAWRECAIR----LRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175 LI LD++ + R+ + + I+ IG K K R ++ G Sbjct: 185 KLIRFEFLDESQFSNIVYDMNIFREEIDGK---IKGIGFYAKHK----------RYSLLG 231 Query: 176 RTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATK--GIQGDLLELYCGNGNFSL 225 +++ + + SF Q N ++++ V++ K G + +++ YCG G ++ Sbjct: 232 EDVVFENVGDHKFRVSMDSFFQVNVYQIKNLIDEVVSEIKDEGFK-KMVDFYCGVGTLTI 290 Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285 +++ L +E + +V+ A+ NI N + NVK ++ + E+ KD Sbjct: 291 PASKYVKEALGIESNEEAVKDAKANIKHNKLKNVKFLKAQT---------EKGLKYAKD- 340 Query: 286 DIHSYRFKTIFVDPPRSGLDDATV---GMVQAYPHILYISCNPDSLCRDL-SILSTTHTI 341 + + + DPPRSGL+ V +Q I+Y+SC+P +L RDL L + Sbjct: 341 ----FLPEAVIFDPPRSGLNRKIVNEISQIQTVRKIIYVSCDPSTLSRDLRQFLENGFRL 396 Query: 342 ERLALFDQFPYTRHMECGVLLVR 364 +++ L D FP T H+E +L R Sbjct: 397 KKVKLIDMFPQTYHIESISVLER 419 >gi|323131314|gb|ADX18744.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] Length = 437 Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 57/187 (30%), Positives = 89/187 (47%), Gaps = 27/187 (14%) Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 F Q N +N M LEW+ + +L+L+CG GNF+L LA V+ VE Sbjct: 268 FIQVNEAVNQQMVARALEWLDVRA---EDRVLDLFCGMGNFTLPLATRAASVIGVEGVPA 324 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDP 299 VE R N N ++NV + +E D+ + F + +DP Sbjct: 325 LVEKGRENAIRNGLHNVTFFHENLEE---------------DVTKQPWAKNGFDKVLLDP 369 Query: 300 PRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHME 357 R+G +++ P I+Y+SCNP +L RD ++++ + + RLA+ D FP+T H+E Sbjct: 370 ARAGATGVMRHIIKLKPIRIVYVSCNPATLARDSEALVNAGYEVTRLAMLDMFPHTGHLE 429 Query: 358 CGVLLVR 364 VL R Sbjct: 430 SMVLFER 436 >gi|143582026|sp|Q0HXI0|RUMA_SHESR RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase Length = 449 Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 59/184 (32%), Positives = 92/184 (50%), Gaps = 22/184 (11%) Query: 185 NSFTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240 +F Q NA IN M L+W LA G + +L+L+CG GNFSL LA+ V+ VE Sbjct: 278 GNFVQVNAQINKAMVAQALDW-LAPQPGER--ILDLFCGMGNFSLPLAKLGAEVIGVEGV 334 Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300 V AR N AAN ++N+ + + + E ++ + +DP Sbjct: 335 PEMVSQARENAAANGLSNLTFYH---GDLSADLSCEPWMGKI----------DKLLLDPA 381 Query: 301 RSGLDDATVGMVQAYP-HILYISCNPDSLCRDLSI-LSTTHTIERLALFDQFPYTRHMEC 358 R+G ++ + + P ++Y+SCNP SL RD ++ L + +++L L D FP T H+E Sbjct: 382 RAGAFESLQWLKKMKPRQVVYVSCNPASLARDSAVLLERGYKLQKLGLIDMFPQTHHIEA 441 Query: 359 GVLL 362 L Sbjct: 442 MALF 445 >gi|325969983|ref|YP_004246174.1| RNA methyltransferase, TrmA family [Spirochaeta sp. Buddy] gi|324025221|gb|ADY11980.1| RNA methyltransferase, TrmA family [Spirochaeta sp. Buddy] Length = 390 Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 62/232 (26%), Positives = 111/232 (47%), Gaps = 24/232 (10%) Query: 141 ALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLE 200 AL+ + Q ++ K+ + Y++E L +L +R +SF Q N +L Sbjct: 171 ALNMNREQTSMVLSEIPIKVLWGKGYIEEELC----SLTFRISHSSFFQVNVE-QAQVLY 225 Query: 201 WVLAATKGIQGD--LLELYCGNGNFSLVLARHFDR-VLAVEIAKPSVEAARYNIAANHVN 257 + I D +++ YCG G +L+ A+ + V+ +E + +VE A+ N N++ Sbjct: 226 TLAMRMAQIDNDDVVVDAYCGTGTIALIAAKEGAKQVIGIESNEQAVEDAKLNAERNNLT 285 Query: 258 NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD--ATVGMVQAY 315 N + + + + M + ++ D+ +F+DPPRSG D+ + A Sbjct: 286 NAEFICADASAHLKEMSKAKQ-----SCDV-------LFLDPPRSGSDERFLAAAIRLAP 333 Query: 316 PHILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTRHMECGVLLVRK 365 I+YISCNP +L RDL L + + + + D FP+T H+E VL+ R+ Sbjct: 334 KRIVYISCNPKTLERDLRYLLRFSDYEVSGIQPVDMFPHTEHLETVVLMTRR 385 >gi|24666579|ref|NP_649083.2| CG3808 [Drosophila melanogaster] gi|23093152|gb|AAF49200.3| CG3808 [Drosophila melanogaster] Length = 615 Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 48/168 (28%), Positives = 85/168 (50%), Gaps = 20/168 (11%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +L++ CG G +L A+H +V+ VEI +++ A +N AN + N K ++ +F ++ Sbjct: 419 MLDICCGTGTITLAFAKHCKKVMGVEIVPDAIKDAEFNAEANGIKNAKFFTGNADDFIKS 478 Query: 273 MRREREFNRL--KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ---AYPHILYISCNPDS 327 M RE +++ K +D+ VDPPR+GL ++ ++ A ++Y+SCNP S Sbjct: 479 MVREALYDQEPGKPLDL------IAVVDPPRAGLHHRSIAAIRSADAINRLVYVSCNPHS 532 Query: 328 LCRDLSILSTTHTIE---------RLALFDQFPYTRHMECGVLLVRKP 366 R+ L+ + + D FP+T H E +L R+P Sbjct: 533 AKRNFIELARPESKQYKGEPFYPKSAVAVDMFPHTMHTELVILFEREP 580 >gi|195352293|ref|XP_002042647.1| GM14902 [Drosophila sechellia] gi|194124531|gb|EDW46574.1| GM14902 [Drosophila sechellia] Length = 615 Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 48/168 (28%), Positives = 85/168 (50%), Gaps = 20/168 (11%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +L++ CG G +L A+H +V+ VEI +++ A +N AN + N K ++ +F ++ Sbjct: 419 MLDICCGTGTITLAFAKHCKKVMGVEIVPDAIKDAEFNAEANGIKNAKFFTGNADDFIKS 478 Query: 273 MRREREFNRL--KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ---AYPHILYISCNPDS 327 M RE +++ K +D+ VDPPR+GL ++ ++ A ++Y+SCNP S Sbjct: 479 MVREALYDQEPGKPLDL------IAVVDPPRAGLHHRSIAAIRSADAINRLVYVSCNPHS 532 Query: 328 LCRDLSILSTTHTIE---------RLALFDQFPYTRHMECGVLLVRKP 366 R+ L+ + + D FP+T H E +L R+P Sbjct: 533 AKRNFIELARPESKQYKGEPFYPKSAVAVDMFPHTMHTELVILFEREP 580 >gi|326629015|gb|EGE35358.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 437 Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 57/187 (30%), Positives = 89/187 (47%), Gaps = 27/187 (14%) Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 F Q N +N M LEW+ + +L+L+CG GNF+L LA V+ VE Sbjct: 268 FIQVNEAVNQQMVARALEWLDVRA---EDRVLDLFCGMGNFTLPLATRAASVIGVEGVPA 324 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDP 299 VE R N N ++NV + +E D+ + F + +DP Sbjct: 325 LVEKGRENAIRNGLHNVTFFHENLEE---------------DVTKQPWAKNGFDKVLLDP 369 Query: 300 PRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHME 357 R+G +++ P I+Y+SCNP +L RD ++++ + + RLA+ D FP+T H+E Sbjct: 370 ARAGATGVMRHIIKLKPIRIVYVSCNPATLARDSEALVNAGYEVTRLAMLDMFPHTGHLE 429 Query: 358 CGVLLVR 364 VL R Sbjct: 430 SMVLFER 436 >gi|313884344|ref|ZP_07818106.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Eremococcus coleocola ACS-139-V-Col8] gi|312620422|gb|EFR31849.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Eremococcus coleocola ACS-139-V-Col8] Length = 456 Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 51/155 (32%), Positives = 78/155 (50%), Gaps = 15/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +L+ YCG G SL LA+ V A+EI ++E A++N AN + NV +A Sbjct: 312 VLDAYCGIGTISLALAQQAKEVYAMEIVPQAIEMAKFNAQANALTNVHF---------EA 362 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCR 330 + E + ++ F VDPPR GLD V ++ P I+Y+SCNP + R Sbjct: 363 GKAEVILPKWQE---QGLDFDVAVVDPPRKGLDRTFVDTLIDLNPGKIVYVSCNPATCAR 419 Query: 331 DLSILS-TTHTIERLALFDQFPYTRHMECGVLLVR 364 D +I + + ++ + D FP T H+E VL+ R Sbjct: 420 DCAIFAEAGYEVKTIKPVDMFPQTVHVEALVLMTR 454 >gi|293557121|ref|ZP_06675675.1| RNA methyltransferase, TrmA family [Enterococcus faecium E1039] gi|291600690|gb|EFF30988.1| RNA methyltransferase, TrmA family [Enterococcus faecium E1039] Length = 267 Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 58/214 (27%), Positives = 103/214 (48%), Gaps = 20/214 (9%) Query: 155 ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL- 213 +K K+ RDY++++L G+T YR SF Q N ++ + + + + D+ Sbjct: 68 GDKEKVLYGRDYIEDQLL--GKT--YRISAKSFYQVNTQQAEYLYQTAIEFAELDKKDIV 123 Query: 214 LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273 ++ Y G G L LA D+V +E+ ++E A++N N + NV + Sbjct: 124 IDAYSGIGTIGLSLADRVDKVYGMEVIPEAIEDAQFNALNNKIENV---------HYEVG 174 Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCRD 331 + E+ + ++ I + I VDPPR GLD + ++ P I+YISCNP + RD Sbjct: 175 KAEKVMKKWQEKGI---KPSVIVVDPPRKGLDHHFIESAIEMSPERIVYISCNPATFARD 231 Query: 332 LSILSTT-HTIERLALFDQFPYTRHMECGVLLVR 364 + + + ++++ D FP T H+E V+ Sbjct: 232 TKLFAEAGYAVKKVQPVDLFPQTHHIELVASFVK 265 >gi|302185508|ref|ZP_07262181.1| 23S rRNA 5-methyluridine methyltransferase [Pseudomonas syringae pv. syringae 642] Length = 451 Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 60/202 (29%), Positives = 95/202 (47%), Gaps = 19/202 (9%) Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNF 223 D + RL L +R F Q NA +N M+E L + + +++L+CG GNF Sbjct: 261 DTLGYRLEPWNLQLAWR--PGDFIQVNAAVNTAMIEQALQWLAPAKDERVMDLFCGLGNF 318 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNRL 282 +L LA V+AVE VE A N +N ++NV+ + S+ T A Sbjct: 319 ALPLAGMAREVVAVEGVATMVERAAVNAMSNDLHNVQFFQADLSQPLTHA---------- 368 Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP-HILYISCNPDSLCRD-LSILSTTHT 340 D + F + +DPPR G + + + +LY+SCNP +L RD + ++ + Sbjct: 369 ---DWAAEGFSAVLLDPPRDGAFEVVRQISKTGARRLLYVSCNPATLARDAVELIRQGYR 425 Query: 341 IERLALFDQFPYTRHMECGVLL 362 ++R + D FP T H+E L Sbjct: 426 LKRAGILDMFPQTAHVEAMALF 447 >gi|160914430|ref|ZP_02076645.1| hypothetical protein EUBDOL_00434 [Eubacterium dolichum DSM 3991] gi|158433588|gb|EDP11877.1| hypothetical protein EUBDOL_00434 [Eubacterium dolichum DSM 3991] Length = 455 Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 45/157 (28%), Positives = 83/157 (52%), Gaps = 15/157 (9%) Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271 ++++LYCG G S+ LA+ V+ VEI ++ A+ N N ++N+ V + + + Sbjct: 311 EVIDLYCGVGTISMFLAQKAKHVIGVEIVDAAIRDAKINAKLNQIDNIDFVCSDAASYAK 370 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLC 329 + ++ + + + VDPPR G DD T+ +V+ P I+Y+SC+P +L Sbjct: 371 KLEKQGK------------KPDVVVVDPPRKGCDDLTLDSIVKMQPKRIVYVSCDPATLA 418 Query: 330 RDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRK 365 RD+ L + + + D FP++ H+E VLL ++ Sbjct: 419 RDIKKLDEKGYAAQVVQPVDMFPFSFHVESIVLLQKR 455 >gi|9755890|emb|CAC01942.1| tRNA(m5U54)methyltransferase [Saccharomyces cerevisiae] Length = 569 Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 55/161 (34%), Positives = 80/161 (49%), Gaps = 23/161 (14%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK-IVRMSSKEFTQ 271 L++ YCG+G FS+ ++ D+V+ VEI+ SV A N AN V N + IV + K F Sbjct: 422 LVDAYCGSGLFSICSSKGVDKVIGVEISADSVSFAEKNAKANGVENCRFIVGKAEKLF-- 479 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLC 329 + ID S ++ +DPPR G D+ + + AY I+YISCN S Sbjct: 480 -----------ESIDTPSEN-TSVILDPPRKGCDELFLKQLAAYNPAKIIYISCNVHSQA 527 Query: 330 RDLSIL------STTHTIERLALFDQFPYTRHMECGVLLVR 364 RD+ + H IE + FD FP T H+E ++ R Sbjct: 528 RDVEYFLKETENGSAHQIESIRGFDFFPQTHHVESVCIMKR 568 >gi|228937723|ref|ZP_04100357.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228970603|ref|ZP_04131251.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228977182|ref|ZP_04137581.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis Bt407] gi|228782491|gb|EEM30670.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis Bt407] gi|228789069|gb|EEM37000.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228821931|gb|EEM67925.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326938209|gb|AEA14105.1| tRNA (Uracil-5-) -methyltransferase [Bacillus thuringiensis serovar chinensis CT-43] Length = 459 Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 84/382 (21%), Positives = 165/382 (43%), Gaps = 44/382 (11%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQ------IFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63 Y++QL +K D + Q + +++ + P HYR +++ + + + ++ Sbjct: 96 YKEQLNQKRDIVVQAFEKYMKNSMEEKIRPTLGMENPWHYRNKSQLQVGRKDEKVITGLY 155 Query: 64 DQQTKERMRIDYFM-------PGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTS-QSD 115 Q + + + I + M + ++ ++ ++ +I E + + I T+ Q+ Sbjct: 156 KQNSHQLIDIAHCMIQHKATNEATKVVRRILEKLNVSIYNEKKQKGLVRTIVTRTAVQTG 215 Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175 + VTLI + + ++ + A K +Q + + I + D+ +AG Sbjct: 216 EVQVTLITTKEELPNKEQFVAEVQKQMPAVKSIMQNVNWRKTSVI-----FGDKTFKLAG 270 Query: 176 RTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSL 225 + +I + + +F Q N V + A + GD +++ YCG G L Sbjct: 271 KEVIQETLGDLSFELSARAFFQLNPEQTVVLYNEAKKAA-ALTGDEKIVDAYCGVGTIGL 329 Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285 LA V +++ ++ AR N + N K ++++ +E Sbjct: 330 WLANDAAEVRGMDVIPEAIADARKNAKRHGFTNTKYEAGKAEQWLPKWVKE--------- 380 Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMV-QAYP-HILYISCNPDSLCRDLSILSTTHTIER 343 +R I VDPPR+G DD + + + P ++Y+SCNP SL RD+ L ++ +E Sbjct: 381 ---GWRPDVIVVDPPRTGCDDKLLETILKVKPKQVVYVSCNPSSLARDVQALMKSYEVEY 437 Query: 344 LALFDQFPYTRHMECGVLLVRK 365 + D FP+T H+E V LVRK Sbjct: 438 VQPVDMFPHTAHVENVVKLVRK 459 >gi|331004223|ref|ZP_08327702.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lachnospiraceae oral taxon 107 str. F0167] gi|330411496|gb|EGG90907.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lachnospiraceae oral taxon 107 str. F0167] Length = 490 Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 66/207 (31%), Positives = 97/207 (46%), Gaps = 27/207 (13%) Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNA-GINV--HMLEWVLAATKGIQGDLLELYCGN 220 RDY+ ERL L ++ SF Q N+ G V ++ L T G + +LY G Sbjct: 304 RDYIIERLN----RLDFKITPFSFFQTNSKGAEVLYNVAGKYLGDTAGKS--VFDLYSGT 357 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G + +LA ++V VEI + +VEAA N N +NN EF + Sbjct: 358 GTIAQLLASESEKVYGVEIVEEAVEAAIENAKNNGLNNC--------EFIAG-------D 402 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSIL-ST 337 LK +D + I +DPPR G+ + + + I+YISC P S RDL ++ + Sbjct: 403 VLKVVDTLGFSPDIIILDPPRDGIHPKALPKILEFGAKRIVYISCKPTSFVRDLKVMEAA 462 Query: 338 THTIERLALFDQFPYTRHMECGVLLVR 364 + +E+ D FP T + EC VLL R Sbjct: 463 GYRMEKCVGVDMFPNTVNCECVVLLSR 489 >gi|161615885|ref|YP_001589850.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|161365249|gb|ABX69017.1| hypothetical protein SPAB_03678 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] Length = 431 Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 57/187 (30%), Positives = 89/187 (47%), Gaps = 27/187 (14%) Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 F Q N +N M LEW+ + +L+L+CG GNF+L LA V+ VE Sbjct: 262 FIQVNEAVNQQMVARALEWLDVRA---EDRVLDLFCGMGNFTLPLATRAASVIGVEGVPA 318 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDP 299 VE R N N ++NV + +E D+ + F + +DP Sbjct: 319 LVEKGRENAIRNGLHNVTFFHENLEE---------------DVTKQPWAKNGFDKVLLDP 363 Query: 300 PRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHME 357 R+G +++ P I+Y+SCNP +L RD ++++ + + RLA+ D FP+T H+E Sbjct: 364 ARAGATGVMRHIIKLKPIRIVYVSCNPATLARDSEALVNAGYEVTRLAMLDMFPHTGHLE 423 Query: 358 CGVLLVR 364 VL R Sbjct: 424 SMVLFER 430 >gi|315651321|ref|ZP_07904348.1| TrmA family RNA methyltransferase [Eubacterium saburreum DSM 3986] gi|315486420|gb|EFU76775.1| TrmA family RNA methyltransferase [Eubacterium saburreum DSM 3986] Length = 418 Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 53/169 (31%), Positives = 85/169 (50%), Gaps = 19/169 (11%) Query: 208 GIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265 G+QGD LL+ Y G G L+ ++ V++VE+ K S + A N N++ NVK Sbjct: 242 GLQGDEVLLDAYSGIGTIGLIASKCVKEVISVELNKDSHKDAITNAKINNIKNVKFYNAD 301 Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD---ATVGMVQAYPHILYIS 322 + F + D+ + + +DPPR+G D A VG ++ ++Y+S Sbjct: 302 ATAF------------INDLAAAGEKIDVVILDPPRTGSTDEFIAAVGRLKP-KKVVYVS 348 Query: 323 CNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVRKPSGWH 370 CNP++L RDL + + E+ + D F +TRH+E VLL + S H Sbjct: 349 CNPETLARDLEVFKKHRYRFEKGMVVDCFCHTRHVEGVVLLSKLDSKNH 397 >gi|229541608|ref|ZP_04430668.1| RNA methyltransferase, TrmA family [Bacillus coagulans 36D1] gi|229326028|gb|EEN91703.1| RNA methyltransferase, TrmA family [Bacillus coagulans 36D1] Length = 468 Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 92/386 (23%), Positives = 163/386 (42%), Gaps = 57/386 (14%) Query: 10 YEQQLAEKVDRLRQMMLAFQV-PNL---QIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ 65 YE QL +K +++ + A P L I P HYR + EF DG H + Sbjct: 98 YEGQLKQKTAHVKEAIAAQGFDPALVRDTIGMDNPWHYRNKMEFTFAPDGSLGLH----E 153 Query: 66 QTKERMRIDY---FMPGSLLINALMIEMMATIRL-----------EPLLRAKLFQIDYLT 111 Q R I + G +++ M E+ A ++ E LLR + + + T Sbjct: 154 QGNFRKVIPLETCLIAGKEMVDGTM-EVAAWVKEHGLKGYDKDAHEGLLRHLMVRQSFAT 212 Query: 112 SQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERL 171 + ++ L + D E A L + + + Q++ + T DR ++ Sbjct: 213 GE---MMLALFATKAPDGELAEAARDLAERITGKFPQVKSLLWLENTDWA-DRTQAEKTH 268 Query: 172 TVAGRTLIYRQIE--------NSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGN 222 ++GR IY ++ ++F Q N +++ L + + + +++L+CG G Sbjct: 269 VLSGRDFIYDEMGGYRYRIWFDTFFQTNPVQAQKLVDLALEMGRPEKTEKMIDLFCGVGT 328 Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282 FSL A + +EI + S+E+A+ N N ++N + ++ Sbjct: 329 FSLPFADRVGELAGIEIVETSIESAKRNAKDNGISNTYFLAKDAR--------------- 373 Query: 283 KDIDIHSYRFKT---IFVDPPRSGLDDATVGMV-QAYPH-ILYISCNPDSLCRDLSILST 337 K ID F + +DPPRSG + + +A P I+Y+SCNPD+ D+ L Sbjct: 374 KGIDEVLESFGNPELLLLDPPRSGAGGKVMRKIGRAKPQRIVYVSCNPDTFATDIKELEP 433 Query: 338 -THTIERLALFDQFPYTRHMECGVLL 362 + + + D FP+T H+EC L+ Sbjct: 434 FGYKLTAVQPVDLFPHTVHVECVTLM 459 >gi|330877092|gb|EGH11241.1| 23S rRNA m(5)U1939 methyltransferase [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 451 Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 56/185 (30%), Positives = 88/185 (47%), Gaps = 23/185 (12%) Query: 185 NSFTQPNAGINVHMLE----WVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240 F Q NA +N M+E W+ A +++L+CG GNF+L LA V+AVE Sbjct: 279 GDFIQVNAAVNTAMIEQALHWLAPAA---DERVMDLFCGLGNFALPLASLAKEVVAVEGV 335 Query: 241 KPSVEAARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299 VE A N +N ++NV+ + S+ T A D + F + +DP Sbjct: 336 ATMVERAAINAMSNDLHNVRFFQADLSQPLTHA-------------DWAAEGFSAVLLDP 382 Query: 300 PRSGLDDATVGMVQAYPH-ILYISCNPDSLCRD-LSILSTTHTIERLALFDQFPYTRHME 357 PR G + + + +LY+SCNP +L RD + ++ + ++R + D FP T H+E Sbjct: 383 PRDGAFEVVRQIRKTGAQRLLYVSCNPATLARDTVELVKQGYRLKRAGILDMFPQTAHVE 442 Query: 358 CGVLL 362 L Sbjct: 443 AMALF 447 >gi|188588342|ref|YP_001919973.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum E3 str. Alaska E43] gi|251777708|ref|ZP_04820628.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|188498623|gb|ACD51759.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum E3 str. Alaska E43] gi|243082023|gb|EES47913.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 450 Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 58/216 (26%), Positives = 99/216 (45%), Gaps = 31/216 (14%) Query: 157 KTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD---- 212 K + RDY+ E+L L ++ SF Q N E + + + G Sbjct: 258 KVNVLYGRDYIQEKLL----GLNFKISPFSFFQ----TNTKGAESLYSLVRDFMGSSENK 309 Query: 213 -LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271 + +LYCG G ++A + +V+ +E+ + +VEAA+ N N +NN + + E + Sbjct: 310 VVFDLYCGTGTIGQIVAPNAKKVVGIELIEEAVEAAKENAKLNGLNNCEFLAGDVAEIIK 369 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLC 329 ++ + + I +DPPRSG+ + V + P I+Y+SCNP +L Sbjct: 370 TVKDKPDI---------------IILDPPRSGVHPKALDYVIKFNAPEIIYVSCNPKTLV 414 Query: 330 RDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364 DL +L + I + + D FP T H E V L++ Sbjct: 415 TDLKVLVERGYKIIQTQVKDMFPNTPHAETIVKLIK 450 >gi|168242718|ref|ZP_02667650.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|194447436|ref|YP_002046926.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|238909737|ref|ZP_04653574.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|194405740|gb|ACF65959.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|205338177|gb|EDZ24941.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] Length = 431 Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 57/187 (30%), Positives = 89/187 (47%), Gaps = 27/187 (14%) Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 F Q N +N M LEW+ + +L+L+CG GNF+L LA V+ VE Sbjct: 262 FIQVNEAVNQQMVARALEWLDVRA---EDRVLDLFCGMGNFTLPLATRAASVIGVEGVPA 318 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDP 299 VE R N N ++NV + +E D+ + F + +DP Sbjct: 319 LVEKGRENAIRNGLHNVTFFHENLEE---------------DVTKQPWAKNGFDKVLLDP 363 Query: 300 PRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHME 357 R+G +++ P I+Y+SCNP +L RD ++++ + + RLA+ D FP+T H+E Sbjct: 364 ARAGATGVMRHIIKLKPIRIVYVSCNPATLARDSEALVNAGYEVTRLAMLDMFPHTGHLE 423 Query: 358 CGVLLVR 364 VL R Sbjct: 424 SMVLFER 430 >gi|222055874|ref|YP_002538236.1| RNA methyltransferase, TrmA family [Geobacter sp. FRC-32] gi|221565163|gb|ACM21135.1| RNA methyltransferase, TrmA family [Geobacter sp. FRC-32] Length = 437 Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 92/350 (26%), Positives = 151/350 (43%), Gaps = 53/350 (15%) Query: 39 EPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMI-EMMATIRL- 96 EP YR R + + + G + ++ + + I PG I I + + ++RL Sbjct: 118 EPYGYRSRVQLKVNYQGGKTRLGFYRPKSHQVVDI----PGHCAITHKSINDTLESLRLL 173 Query: 97 -----EPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQL 151 +P + QID + D++I ++ H A + + L + L Sbjct: 174 MEGCPDP---GNISQID-IARGDDESISVIVNHAGASVA------EVSEYLLQHREISDL 223 Query: 152 IGR-----ANKTKICLDRDYVDERL---TVAG---RTLIYRQIENSFTQPNAGINVHMLE 200 IG N T +++ R+ T+ G +TL + + ++F+Q N N+ ++ Sbjct: 224 IGSMFIRHKNSTTSIFGAEHLSYRISGNTLPGGSEKTLFFSK--DAFSQINYQQNMQLIR 281 Query: 201 WV--LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN 258 V AA G + +L+LYCGNGNFS+ LA V E +PS+ AR N N V N Sbjct: 282 VVSDFAALTGKE-KVLDLYCGNGNFSIPLADKAAHVTGFEGYEPSIADARKNAEWNGVTN 340 Query: 259 VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--P 316 + S + + RE F + +DPPR+G + + +QA Sbjct: 341 ISFHCSDSAAAVKKLAAARE------------TFDVVVLDPPRNGAAE-VMHHIQALNAD 387 Query: 317 HILYISCNPDSLCRDLSILSTTH-TIERLALFDQFPYTRHMECGVLLVRK 365 I+Y+SC+P +L RDL IL + + D FP T H+E LL + Sbjct: 388 RIIYVSCDPATLARDLGILKKNGFQVINIQGVDMFPQTYHLESVTLLTKS 437 >gi|205353903|ref|YP_002227704.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205273684|emb|CAR38674.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] Length = 431 Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 57/187 (30%), Positives = 89/187 (47%), Gaps = 27/187 (14%) Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 F Q N +N M LEW+ + +L+L+CG GNF+L LA V+ VE Sbjct: 262 FIQVNEAVNQQMVARALEWLDVRA---EDRVLDLFCGMGNFTLPLATRAASVIGVEGVPA 318 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDP 299 VE R N N ++NV + +E D+ + F + +DP Sbjct: 319 LVEKGRENAIRNGLHNVTFFHENLEE---------------DVTKQPWAKNGFDKVLLDP 363 Query: 300 PRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHME 357 R+G +++ P I+Y+SCNP +L RD ++++ + + RLA+ D FP+T H+E Sbjct: 364 ARAGATGVMRHIIKLKPIRIVYVSCNPATLARDSEALVNAGYEVTRLAMLDMFPHTGHLE 423 Query: 358 CGVLLVR 364 VL R Sbjct: 424 SMVLFER 430 >gi|113969454|ref|YP_733247.1| 23S rRNA 5-methyluridine methyltransferase [Shewanella sp. MR-4] gi|113884138|gb|ABI38190.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Shewanella sp. MR-4] Length = 463 Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 59/184 (32%), Positives = 92/184 (50%), Gaps = 22/184 (11%) Query: 185 NSFTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240 +F Q NA IN M L+W LA G + +L+L+CG GNFSL LA+ V+ VE Sbjct: 292 GNFVQVNAQINKAMVAQALDW-LAPQPGER--ILDLFCGMGNFSLPLAKLGAEVIGVEGV 348 Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300 V AR N AAN ++N+ + + + E ++ + +DP Sbjct: 349 PDMVSQARENAAANGLSNLTFYH---GDLSADLSCEPWMGKI----------DKLLLDPA 395 Query: 301 RSGLDDATVGMVQAYP-HILYISCNPDSLCRDLSI-LSTTHTIERLALFDQFPYTRHMEC 358 R+G ++ + + P ++Y+SCNP SL RD ++ L + +++L L D FP T H+E Sbjct: 396 RAGAFESLQWLKKMKPRQVVYVSCNPASLARDSAVLLERGYKLQKLGLIDMFPQTHHIEA 455 Query: 359 GVLL 362 L Sbjct: 456 MALF 459 >gi|197247468|ref|YP_002147867.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197211171|gb|ACH48568.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Salmonella enterica subsp. enterica serovar Agona str. SL483] Length = 431 Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 57/187 (30%), Positives = 89/187 (47%), Gaps = 27/187 (14%) Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 F Q N +N M LEW+ + +L+L+CG GNF+L LA V+ VE Sbjct: 262 FIQVNEAVNQQMVARALEWLDVRA---EDRVLDLFCGMGNFTLPLATRAASVIGVEGVPA 318 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDP 299 VE R N N ++NV + +E D+ + F + +DP Sbjct: 319 LVEKGRENAIRNGLHNVTFFHENLEE---------------DVTKQPWAKNGFDKVLLDP 363 Query: 300 PRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHME 357 R+G +++ P I+Y+SCNP +L RD ++++ + + RLA+ D FP+T H+E Sbjct: 364 ARAGATGVMRHIIKLKPIRIVYVSCNPATLARDSEALVNAGYEVTRLAMLDMFPHTGHLE 423 Query: 358 CGVLLVR 364 VL R Sbjct: 424 SMVLFER 430 >gi|52079174|ref|YP_077965.1| putative RNA methyltransferase YefA [Bacillus licheniformis ATCC 14580] gi|52784541|ref|YP_090370.1| YefA [Bacillus licheniformis ATCC 14580] gi|52002385|gb|AAU22327.1| putative RNA methyltransferase YefA [Bacillus licheniformis ATCC 14580] gi|52347043|gb|AAU39677.1| YefA [Bacillus licheniformis ATCC 14580] Length = 462 Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 51/156 (32%), Positives = 78/156 (50%), Gaps = 15/156 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G SL LA+ +V VEI ++E A+ N N + N + E Sbjct: 315 VIDAYCGIGTISLFLAKQAKKVYGVEIVPEAIEDAKRNAELNGIENAE---FEVGEAEVV 371 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330 + + E D T+ VDPPR G D+A + +++ P ++Y+SCNP +L R Sbjct: 372 IPKWYEEGIAAD---------TLVVDPPRKGCDEALLRTIIEMKPKRVVYVSCNPGTLAR 422 Query: 331 DLSILSTTHTIER-LALFDQFPYTRHMECGVLLVRK 365 DL +L + R + D FP+T H+EC LV K Sbjct: 423 DLRVLEDGGYVTREVQPVDMFPHTSHVECVTKLVLK 458 >gi|255533504|ref|YP_003093876.1| TrmA family RNA methyltransferase [Pedobacter heparinus DSM 2366] gi|255346488|gb|ACU05814.1| RNA methyltransferase, TrmA family [Pedobacter heparinus DSM 2366] Length = 481 Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 62/212 (29%), Positives = 98/212 (46%), Gaps = 24/212 (11%) Query: 163 DRDYVDERLTVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGDLL 214 D + E +T AGR I+ ++E SF Q N+ H L + G GD L Sbjct: 275 DTIFDQEVITYAGRDHIFEEMEGLKFKIGVKSFYQTNSD-QAHELYKITKEFAGFSGDEL 333 Query: 215 --ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +LY G G + +AR +V+ +E ++E A++N N ++N K+ Sbjct: 334 VYDLYTGAGTIANFVARSVKQVVGIEYVPTAIEDAKFNATLNGIDNTVFYAGDMKDILT- 392 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG--MVQAYPHILYISCNPDSLCR 330 REF I H + + DPPR+G+ V + I+Y+SCN + R Sbjct: 393 ----REF-----IAEHG-KPDVVITDPPRAGMHADVVERLLEMEAGKIVYVSCNAATQAR 442 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLL 362 DL++L + + R+ D FP+T+H+E VLL Sbjct: 443 DLALLKEKYEVVRIKPVDMFPHTQHVENVVLL 474 >gi|168231048|ref|ZP_02656106.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|194471802|ref|ZP_03077786.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194458166|gb|EDX47005.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|205334540|gb|EDZ21304.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] Length = 431 Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 57/187 (30%), Positives = 89/187 (47%), Gaps = 27/187 (14%) Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 F Q N +N M LEW+ + +L+L+CG GNF+L LA V+ VE Sbjct: 262 FIQVNEAVNQQMVARALEWLDVRA---EDRVLDLFCGMGNFTLPLATRAASVVGVEGVPA 318 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDP 299 VE R N N ++NV + +E D+ + F + +DP Sbjct: 319 LVEKGRENAIRNGLHNVTFFHENLEE---------------DVTKQPWAKNGFDKVLLDP 363 Query: 300 PRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHME 357 R+G +++ P I+Y+SCNP +L RD ++++ + + RLA+ D FP+T H+E Sbjct: 364 ARAGATGVMRHIIKLKPIRIVYVSCNPATLARDSEALINAGYEVTRLAMLDMFPHTGHLE 423 Query: 358 CGVLLVR 364 VL R Sbjct: 424 SMVLFER 430 >gi|16766263|ref|NP_461878.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|167550177|ref|ZP_02343934.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167993449|ref|ZP_02574543.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|197265036|ref|ZP_03165110.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|207858223|ref|YP_002244874.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|20140074|sp|Q8ZME1|RUMA_SALTY RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|16421508|gb|AAL21837.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|197243291|gb|EDY25911.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|205324674|gb|EDZ12513.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205328450|gb|EDZ15214.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|206710026|emb|CAR34381.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|261248093|emb|CBG25928.1| Uracil-5--methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267995093|gb|ACY89978.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301159518|emb|CBW19037.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312913979|dbj|BAJ37953.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321225637|gb|EFX50691.1| 23S rRNA Uracil-5- -methyltransferase RumA [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|332989828|gb|AEF08811.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 431 Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 57/187 (30%), Positives = 89/187 (47%), Gaps = 27/187 (14%) Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 F Q N +N M LEW+ + +L+L+CG GNF+L LA V+ VE Sbjct: 262 FIQVNEAVNQQMVARALEWLDVRA---EDRVLDLFCGMGNFTLPLATRAASVIGVEGVPA 318 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDP 299 VE R N N ++NV + +E D+ + F + +DP Sbjct: 319 LVEKGRENAIRNGLHNVTFFHENLEE---------------DVTKQPWAKNGFDKVLLDP 363 Query: 300 PRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHME 357 R+G +++ P I+Y+SCNP +L RD ++++ + + RLA+ D FP+T H+E Sbjct: 364 ARAGATGVMRHIIKLKPIRIVYVSCNPATLARDSEALVNAGYEVTRLAMLDMFPHTGHLE 423 Query: 358 CGVLLVR 364 VL R Sbjct: 424 SMVLFER 430 >gi|323484926|ref|ZP_08090281.1| hypothetical protein HMPREF9474_02032 [Clostridium symbiosum WAL-14163] gi|323401807|gb|EGA94150.1| hypothetical protein HMPREF9474_02032 [Clostridium symbiosum WAL-14163] Length = 457 Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 70/237 (29%), Positives = 112/237 (47%), Gaps = 31/237 (13%) Query: 137 RLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINV 196 ++ LH + + + T++ +DY E L L +R SF Q N+ + Sbjct: 243 KMAGILHTKNDSLADAVKDEGTEVLYGKDYFFEELL----GLKFRISPFSFFQTNS-LGA 297 Query: 197 HML-----EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251 +L E+V TKG + +LY G G + +LA ++V+ VEI K +VEAA+ N Sbjct: 298 EVLYEKTREYV-GETKGKV--VFDLYSGTGTIAQILAPVAEKVVGVEIVKEAVEAAKENA 354 Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311 N ++N EF + LK +D + + + I +DPPR G+ + Sbjct: 355 RLNGLDNC--------EFIAG-------DVLKVVDELTDKPELIVLDPPRDGIHPKAIEK 399 Query: 312 VQAY--PHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRK 365 + + ++Y+SC P SL RDL IL + +E+ D FP T ++E VLL RK Sbjct: 400 IIGFGVERMVYVSCKPTSLARDLVILQENGYRVEKGCCVDMFPGTANVETVVLLGRK 456 >gi|228913060|ref|ZP_04076699.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228846465|gb|EEM91478.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 459 Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 49/153 (32%), Positives = 80/153 (52%), Gaps = 15/153 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G+ SL LA+ +V VEI ++E A+ N A N++ N + ++ Sbjct: 315 VIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDAKRNAALNNMTNAEFGVGEAEVVIPK 374 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330 +E + D T+ VDPPR G D+A + ++ P ++Y+SCNP +L R Sbjct: 375 WYKE---GVIAD---------TMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLAR 422 Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMECGVLL 362 DL +L + + + D FP+T H+EC LL Sbjct: 423 DLKVLEEGGYKTQEVQPVDMFPHTTHVECVTLL 455 >gi|138893992|ref|YP_001124445.1| SAM-dependent methyltransferase [Geobacillus thermodenitrificans NG80-2] gi|134265505|gb|ABO65700.1| SAM-dependent methyltransferase [Geobacillus thermodenitrificans NG80-2] Length = 463 Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 97/388 (25%), Positives = 169/388 (43%), Gaps = 55/388 (14%) Query: 9 QYEQQLAEKVDRLRQMMLAFQV-PNL---QIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 QYE QL K + ++ ++ PN+ I P HYR + EF +G H Sbjct: 96 QYEGQLRHKTEHVKALLEQHGFDPNIVRETIGMEHPWHYRNKMEFTFSPEGLLGLH---- 151 Query: 65 QQTKERMRIDY---FMPGSLLINALMIEMMATIR-----------LEPLLRAKLFQIDYL 110 +Q R I + G ++ A M E+ R E LLR + + + Sbjct: 152 EQGNFRQIISLETCLIAGERIVKAAM-EVARWARDHQLPGYHKDTHEGLLRHVMVRESFA 210 Query: 111 TSQSDQAI-VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDE 169 T + A+ T L A + R+ AL K + L RA +I ++ +V Sbjct: 211 TGEVMVALFATEAPEGELKQAADDLTERITKALPEVKSLLWLENRAWADRIQAEQTHV-- 268 Query: 170 RLTVAGRTLIYRQIE--------NSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGN 220 +AGR IY ++ ++F Q N ++E L K + +++L+CG Sbjct: 269 ---LAGRDFIYDELCGFRYRLWFDTFFQTNPVQAAKLVELALEMGKPQPHEKMIDLFCGV 325 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G FSL A+ + +EI + S+E+A+ N N ++N + R+ Sbjct: 326 GTFSLPFAKRVKALAGIEIVETSIESAKRNAKDNGIDNTYFL-------------ARDAR 372 Query: 281 RLKDIDIHSY-RFKTIFVDPPRSGLDDATVGMV-QAYPH-ILYISCNPDSLCRDLS-ILS 336 R D + + R + + +DPPRSG + + ++ P I+Y+SCNP++ D++ ++ Sbjct: 373 RGIDEVLEQFGRPELLLLDPPRSGAGGKVMRKIGRSQPERIVYVSCNPETFAADIAELVP 432 Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVR 364 +T++ + D FP+T H+E L+ R Sbjct: 433 FGYTLKTVQPVDMFPHTAHVELVALMSR 460 >gi|325106371|ref|YP_004276025.1| 23S rRNA m(5)U-1939 methyltransferase [Pedobacter saltans DSM 12145] gi|324975219|gb|ADY54203.1| 23S rRNA m(5)U-1939 methyltransferase [Pedobacter saltans DSM 12145] Length = 465 Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 64/218 (29%), Positives = 99/218 (45%), Gaps = 28/218 (12%) Query: 157 KTKICLDRDYVDERLTVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKG 208 K D+D + T G IY ++E SF Q N+ + + L + G Sbjct: 260 KNDTIFDQDVI----TYRGNPFIYEEMEGLKFRVGPKSFYQTNS-LQAYELYKITREFAG 314 Query: 209 IQGDLL--ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266 + G+ L +LY G G + +AR V+ VE ++E A+ N A N++ N K Sbjct: 315 LSGNELVYDLYTGTGTIANFVARQAREVVGVEYVPSAIEDAKVNSAINNIPNTKFYAGDM 374 Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG--MVQAYPHILYISCN 324 K+ A EF I H + + DPPR+G+ V M ++Y+SCN Sbjct: 375 KDVLSA-----EF-----IAEHG-KPDVVITDPPRAGMHADVVARLMDMEAEKVVYVSCN 423 Query: 325 PDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362 + RDL+IL + + R+ D FP+T+H+E VLL Sbjct: 424 AATQARDLAILKDKYDVARIKPVDMFPHTQHVENVVLL 461 >gi|294649349|ref|ZP_06726781.1| 23S rRNA (uracil-5-)-methyltransferase [Acinetobacter haemolyticus ATCC 19194] gi|292824789|gb|EFF83560.1| 23S rRNA (uracil-5-)-methyltransferase [Acinetobacter haemolyticus ATCC 19194] Length = 463 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 60/194 (30%), Positives = 95/194 (48%), Gaps = 32/194 (16%) Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLAR---HFDRVLAVEIAKP 242 FTQ N+ +N M++ + +G+ +L+L+CG GNFSL LAR +V+ VE + Sbjct: 286 FTQVNSAVNARMIQLACELLQLKEGERVLDLFCGLGNFSLPLARCVGDTGQVIGVEASDE 345 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDP 299 V A N AN +N F+Q + KD H + F + +DP Sbjct: 346 MVLRATENAKANSLNQAIF-------FSQDL--------TKDFSHHPWAKQGFDALLIDP 390 Query: 300 PRSGLDDATVGMVQAYPH-----ILYISCNPDSLCRDLSILST-THTIERLALFDQFPYT 353 PRSG ++Q P+ I+Y+SCNP +L RD +L+ + +++ A+ D F +T Sbjct: 391 PRSG----AFEVMQYVPNFGANRIVYVSCNPSTLARDAGVLAQHGYQLKKAAVLDMFTHT 446 Query: 354 RHMECGVLLVRKPS 367 H+E L + S Sbjct: 447 EHVESIALFEKNES 460 >gi|163938416|ref|YP_001643300.1| RNA methyltransferase [Bacillus weihenstephanensis KBAB4] gi|229009910|ref|ZP_04167129.1| Uncharacterized RNA methyltransferase [Bacillus mycoides DSM 2048] gi|229131423|ref|ZP_04260319.1| Uncharacterized RNA methyltransferase [Bacillus cereus BDRD-ST196] gi|163860613|gb|ABY41672.1| RNA methyltransferase, TrmA family [Bacillus weihenstephanensis KBAB4] gi|228652007|gb|EEL07948.1| Uncharacterized RNA methyltransferase [Bacillus cereus BDRD-ST196] gi|228751341|gb|EEM01148.1| Uncharacterized RNA methyltransferase [Bacillus mycoides DSM 2048] Length = 459 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 47/155 (30%), Positives = 77/155 (49%), Gaps = 14/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G L LA V +++ ++E A+ N + N K ++++ Sbjct: 317 IVDAYCGVGTIGLWLANDAAEVRGMDVIPEAIEDAKKNAKRHGFTNAKYEAGKAEQWLPK 376 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYP-HILYISCNPDSLCR 330 +E +R I VDPPR+G DD + + + P ++Y+SCNP SL R Sbjct: 377 WVKE------------GWRPDVIVVDPPRTGCDDKLLETILKVKPKQVVYVSCNPSSLAR 424 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 D+ L ++ +E + D FP+T H+E V LVRK Sbjct: 425 DVETLMESYEVEYVQPVDMFPHTAHVENVVKLVRK 459 >gi|229165425|ref|ZP_04293209.1| Uncharacterized RNA methyltransferase [Bacillus cereus AH621] gi|228618023|gb|EEK75064.1| Uncharacterized RNA methyltransferase [Bacillus cereus AH621] Length = 459 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 47/155 (30%), Positives = 77/155 (49%), Gaps = 14/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G L LA V +++ ++E A+ N + N K ++++ Sbjct: 317 IVDAYCGVGTIGLWLANDAAEVRGMDVIPEAIEDAKKNAKRHGFTNAKYEAGKAEQWLPK 376 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYP-HILYISCNPDSLCR 330 +E +R I VDPPR+G DD + + + P ++Y+SCNP SL R Sbjct: 377 WVKE------------GWRPDVIVVDPPRTGCDDKLLETILKVKPKQVVYVSCNPSSLAR 424 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 D+ L ++ +E + D FP+T H+E V LVRK Sbjct: 425 DVETLMESYEVEYVQPVDMFPHTAHVENVVKLVRK 459 >gi|62181467|ref|YP_217884.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|224584748|ref|YP_002638546.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|75481161|sp|Q57KF9|RUMA_SALCH RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|62129100|gb|AAX66803.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|224469275|gb|ACN47105.1| 23S rRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|322715951|gb|EFZ07522.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 431 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 57/187 (30%), Positives = 89/187 (47%), Gaps = 27/187 (14%) Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 F Q N +N M LEW+ + +L+L+CG GNF+L LA V+ VE Sbjct: 262 FIQVNEAVNQQMVARALEWLDVRA---EDRVLDLFCGMGNFTLPLATRAASVVGVEGVPA 318 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDP 299 VE R N N ++NV + +E D+ + F + +DP Sbjct: 319 LVEKGRENAIRNGLHNVTFFHENLEE---------------DVTKQPWAKNGFDKVLLDP 363 Query: 300 PRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHME 357 R+G +++ P I+Y+SCNP +L RD ++++ + + RLA+ D FP+T H+E Sbjct: 364 ARAGATGVMRHIIKLKPIRIVYVSCNPATLARDSEALVNAGYEVTRLAMLDMFPHTGHLE 423 Query: 358 CGVLLVR 364 VL R Sbjct: 424 SMVLFER 430 >gi|291524456|emb|CBK90043.1| 23S rRNA m(5)U-1939 methyltransferase [Eubacterium rectale DSM 17629] Length = 493 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 102/410 (24%), Positives = 175/410 (42%), Gaps = 61/410 (14%) Query: 10 YEQQLAEKVDRLRQMML---AFQVPNLQ------IFRSEPIHYRMRAEFHIWHDGD-DLY 59 YE+QL K +++R ++ F L + P YR +A+F + +D D ++ Sbjct: 87 YEKQLEFKNNKVRNNLMRIGGFSEAKLDSKMQPPVGADNPYRYRNKAQFPVGYDRDGNIV 146 Query: 60 HIMFDQQTKERMRID---YFMPGSLLINALMIEMMATIRLEP--------LLRAKLFQID 108 + ++ + +D +P + I ++ E M + P L+R L + Sbjct: 147 TGFYASRSHNIIPVDDCRLGVPQNKEILDIIKEWMNECGITPYDENTHKGLVRHVLIRYG 206 Query: 109 YLTSQSDQAIVTLIYHRLLDDAWREC-AIRLRDALHARKYQIQL-------IGRAN---- 156 + S Q +V L+ + D +C A D L R +I I + N Sbjct: 207 FT---SKQIMVCLVING--DSLEAKCRAGNAADILCERLSKIDGMTSISYNINKENTNVI 261 Query: 157 --KTKICL-DRDYVDERL--------TVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA 205 K +C+ R Y+++ + T G + Y+ SF Q N + LA Sbjct: 262 LGKKTVCIWGRPYIEDTIHLLSYPDFTPQGTGITYQISPQSFYQVNPKQTEKLYSTALAF 321 Query: 206 TKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVR 263 G+ G+ + +LYCG G SL L++ +V VEI +++ A+ N N + N + Sbjct: 322 A-GLTGNENVWDLYCGIGTISLFLSQKAKQVYGVEIVPQAIKDAKNNAKLNGITNAQFFV 380 Query: 264 MSSKE-FTQAMRREREFNRLKDIDIHSYRF-----KTIFVDPPRSGLDDATVG-MVQAYP 316 ++E Q ++ ++ D + R I VDPPR G D+ + M+ P Sbjct: 381 GKAEEVLPQFYENAKKTEKITDDKASTGRTDMLRPDVIVVDPPRKGCDEKCLDTMLAMLP 440 Query: 317 H-ILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364 I+Y+SC+ +L RDL IL + + + FDQF +T H+E LL R Sbjct: 441 ERIVYVSCDSATLARDLKILCEEKYELMKWQAFDQFSHTTHVESICLLER 490 >gi|69246826|ref|ZP_00604135.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium DO] gi|257878457|ref|ZP_05658110.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium 1,230,933] gi|257882876|ref|ZP_05662529.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium 1,231,502] gi|257889346|ref|ZP_05668999.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium 1,231,410] gi|257894358|ref|ZP_05674011.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium 1,231,408] gi|258616021|ref|ZP_05713791.1| RNA methyltransferase [Enterococcus faecium DO] gi|260560044|ref|ZP_05832222.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium C68] gi|261207467|ref|ZP_05922153.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium TC 6] gi|289565878|ref|ZP_06446319.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium D344SRF] gi|293559994|ref|ZP_06676502.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium E1162] gi|294621045|ref|ZP_06700237.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium U0317] gi|314937822|ref|ZP_07845139.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium TX0133a04] gi|314941632|ref|ZP_07848512.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium TX0133C] gi|314948879|ref|ZP_07852248.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium TX0082] gi|314951003|ref|ZP_07854070.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium TX0133A] gi|314993004|ref|ZP_07858400.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium TX0133B] gi|314996451|ref|ZP_07861494.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium TX0133a01] gi|68195059|gb|EAN09521.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium DO] gi|257812685|gb|EEV41443.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium 1,230,933] gi|257818534|gb|EEV45862.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium 1,231,502] gi|257825706|gb|EEV52332.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium 1,231,410] gi|257830737|gb|EEV57344.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium 1,231,408] gi|260073879|gb|EEW62203.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium C68] gi|260078358|gb|EEW66063.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium TC 6] gi|289162338|gb|EFD10197.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium D344SRF] gi|291599359|gb|EFF30384.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium U0317] gi|291606082|gb|EFF35508.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium E1162] gi|313589433|gb|EFR68278.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium TX0133a01] gi|313592527|gb|EFR71372.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium TX0133B] gi|313596858|gb|EFR75703.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium TX0133A] gi|313599523|gb|EFR78366.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium TX0133C] gi|313642853|gb|EFS07433.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium TX0133a04] gi|313644669|gb|EFS09249.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium TX0082] Length = 457 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 58/214 (27%), Positives = 103/214 (48%), Gaps = 20/214 (9%) Query: 155 ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL- 213 +K K+ RDY++++L G+T YR SF Q N ++ + + + + D+ Sbjct: 258 GDKEKVLYGRDYIEDQLL--GKT--YRISAKSFYQVNTQQAEYLYQTAIEFAELDKKDIV 313 Query: 214 LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273 ++ Y G G L LA D+V +E+ ++E A++N N + NV + Sbjct: 314 IDAYSGIGTIGLSLADRVDKVYGMEVIPEAIEDAQFNALNNKIENV---------HYEVG 364 Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCRD 331 + E+ + ++ I + I VDPPR GLD + ++ P I+YISCNP + RD Sbjct: 365 KAEKVMKKWQEKGI---KPSVIVVDPPRKGLDHHFIESAIEMSPERIVYISCNPATFARD 421 Query: 332 LSILSTT-HTIERLALFDQFPYTRHMECGVLLVR 364 + + + ++++ D FP T H+E V+ Sbjct: 422 AKLFAEAGYAVKKVQPVDLFPQTHHIELVASFVK 455 >gi|160893946|ref|ZP_02074725.1| hypothetical protein CLOL250_01501 [Clostridium sp. L2-50] gi|156864324|gb|EDO57755.1| hypothetical protein CLOL250_01501 [Clostridium sp. L2-50] Length = 402 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 49/155 (31%), Positives = 77/155 (49%), Gaps = 15/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G +V + RV+ VE+ ++ A+ N N + N++ + F Sbjct: 254 VIDAYCGIGTIGIVASDRAKRVIGVELNAEAIRDAKINSRMNKIENIEFYANDAGRF--- 310 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSG-LDDATVGMVQAYP-HILYISCNPDSLCR 330 L D D H +F+DPPRSG ++ +V P ++YISC PD+L R Sbjct: 311 ------MVELADADEH---IDVVFMDPPRSGSTEEFLSSVVTLSPRKVVYISCGPDTLAR 361 Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364 DL L+T + + ++ FD FP+T H E LL R Sbjct: 362 DLKYLTTHGYQVLKITPFDLFPFTEHTEVVTLLTR 396 >gi|143581977|sp|Q0HL77|RUMA_SHESM RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase Length = 449 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 59/184 (32%), Positives = 92/184 (50%), Gaps = 22/184 (11%) Query: 185 NSFTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240 +F Q NA IN M L+W LA G + +L+L+CG GNFSL LA+ V+ VE Sbjct: 278 GNFVQVNAQINKAMVAQALDW-LAPQPGER--ILDLFCGMGNFSLPLAKLGAEVIGVEGV 334 Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300 V AR N AAN ++N+ + + + E ++ + +DP Sbjct: 335 PDMVSQARENAAANGLSNLTFYH---GDLSADLSCEPWMGKI----------DKLLLDPA 381 Query: 301 RSGLDDATVGMVQAYP-HILYISCNPDSLCRDLSI-LSTTHTIERLALFDQFPYTRHMEC 358 R+G ++ + + P ++Y+SCNP SL RD ++ L + +++L L D FP T H+E Sbjct: 382 RAGAFESLQWLKKMKPRQVVYVSCNPASLARDSAVLLERGYKLQKLGLIDMFPQTHHIEA 441 Query: 359 GVLL 362 L Sbjct: 442 MALF 445 >gi|294614134|ref|ZP_06694055.1| 23S rRNA (uracil-5-)-methyltransferase [Enterococcus faecium E1636] gi|291592984|gb|EFF24572.1| 23S rRNA (uracil-5-)-methyltransferase [Enterococcus faecium E1636] Length = 457 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 58/214 (27%), Positives = 103/214 (48%), Gaps = 20/214 (9%) Query: 155 ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL- 213 +K K+ RDY++++L G+T YR SF Q N ++ + + + + D+ Sbjct: 258 GDKEKVLYGRDYIEDQLL--GKT--YRISAKSFYQVNTQQAEYLYQTAIEFAELDKKDIV 313 Query: 214 LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273 ++ Y G G L LA D+V +E+ ++E A++N N + NV + Sbjct: 314 IDAYSGIGTIGLSLADRVDKVYGMEVIPEAIEDAQFNALNNKIENV---------HYEVG 364 Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCRD 331 + E+ + ++ I + I VDPPR GLD + ++ P I+YISCNP + RD Sbjct: 365 KAEKVMKKWQEKGI---KPSVIVVDPPRKGLDHHFIESAIEMSPERIVYISCNPATFARD 421 Query: 332 LSILSTT-HTIERLALFDQFPYTRHMECGVLLVR 364 + + + ++++ D FP T H+E V+ Sbjct: 422 TKLFAEAGYAVKKVQPVDLFPQTHHIELVASFVK 455 >gi|229083613|ref|ZP_04215941.1| Uncharacterized RNA methyltransferase [Bacillus cereus Rock3-44] gi|228699703|gb|EEL52360.1| Uncharacterized RNA methyltransferase [Bacillus cereus Rock3-44] Length = 465 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 50/149 (33%), Positives = 78/149 (52%), Gaps = 15/149 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G+ SL LA+ +V VEI ++E A+ N N+ M++ EF Sbjct: 322 VIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDAKRNAELNN--------MTNAEFAVG 373 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330 N K+ I TI VDPPR G D+A + +++ P ++Y+SCNP +L R Sbjct: 374 EAEVVIPNWYKEGIIAD----TIVVDPPRKGCDEALLNTIIEMKPKRVVYVSCNPATLAR 429 Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMEC 358 DL +L + + + D FP+T H+EC Sbjct: 430 DLKVLEEGGYKTQEVQPVDMFPHTTHVEC 458 >gi|302670309|ref|YP_003830269.1| 23S rRNA methyltransferase [Butyrivibrio proteoclasticus B316] gi|302394782|gb|ADL33687.1| 23S rRNA methyltransferase [Butyrivibrio proteoclasticus B316] Length = 475 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 50/161 (31%), Positives = 82/161 (50%), Gaps = 17/161 (10%) Query: 209 IQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266 ++GD L+ Y G G L+ + H V++VE+ +V+ A+ N N+V+N+ + Sbjct: 327 LKGDEVALDCYSGVGTIGLIASPHVKEVISVELNPDAVKDAKINAKINNVSNITFYENDA 386 Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCN 324 F Q M + L +F+DPPRSG + M+ P I+YISC+ Sbjct: 387 TRFMQQMADSGDKADL------------VFMDPPRSGSTPEFIESMINLSPDKIVYISCS 434 Query: 325 PDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364 PDSL RDL +++ + +++ D FP+TR +E LL + Sbjct: 435 PDSLARDLELITKGGYKVKKAIPVDMFPFTRSIEMVTLLTK 475 >gi|194445322|ref|YP_002042208.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194403985|gb|ACF64207.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Salmonella enterica subsp. enterica serovar Newport str. SL254] Length = 431 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 57/187 (30%), Positives = 89/187 (47%), Gaps = 27/187 (14%) Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 F Q N +N M LEW+ + +L+L+CG GNF+L LA V+ VE Sbjct: 262 FIQVNEAVNQQMVARALEWLDVRA---EDRVLDLFCGMGNFTLPLATRAASVVGVEGVPA 318 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDP 299 VE R N N ++NV + +E D+ + F + +DP Sbjct: 319 LVEKGRENAIRNGLHNVTFFHENLEE---------------DVTKQPWAKNGFDKVLLDP 363 Query: 300 PRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHME 357 R+G +++ P I+Y+SCNP +L RD ++++ + + RLA+ D FP+T H+E Sbjct: 364 ARAGATGVMRHIIKLKPIRIVYVSCNPATLARDSEALVNAGYEVTRLAMLDMFPHTGHLE 423 Query: 358 CGVLLVR 364 VL R Sbjct: 424 SMVLFER 430 >gi|222153492|ref|YP_002562669.1| RNA methyltransferase [Streptococcus uberis 0140J] gi|222114305|emb|CAR42966.1| putative RNA methyltransferase [Streptococcus uberis 0140J] Length = 451 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 86/388 (22%), Positives = 155/388 (39%), Gaps = 58/388 (14%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFR-------SEPIHYRMRAEFHIWHDGDDLYHIM 62 Y QQL K D +RQ + F+ + ++ P HYR + +F + + Sbjct: 90 YPQQLVFKEDVIRQALKKFKPKGYEQYQIRNTIGMDNPWHYRAKLQFQTRSFSGKVVAGL 149 Query: 63 F----------------DQQTKE------RMRIDYFMPGSLLINALMIEMMATIRLEPLL 100 + DQ T+E ++ Y +P + N IE + TI + + Sbjct: 150 YAEGSHRLIPIDNCLVQDQSTQEIVNHITQLLDQYKIP---IYNERKIEGLRTIMIRKAI 206 Query: 101 RAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKI 160 ++ QI ++TS+ ++ + A+ + + + Y +KT+I Sbjct: 207 ASQTLQIIFITSKEVHLAPIILDMTKTYPEIKTVALNINRSKSSELY-------GDKTEI 259 Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCG 219 +D ++E + L R +F Q N + V+ A + + D +++ YCG Sbjct: 260 IWGQDTIEEEVLDYHFALSPR----AFYQLNPKQTSVLYAQVVEALEVSESDHIIDAYCG 315 Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279 G A+ + ++I ++E A+ N N +++ ++ Sbjct: 316 VGTIGFAFAKKVKSIRGMDIIPEAIEDAKKNAQDMGFENTYYECGKAEDIIPKWYQD--- 372 Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILST 337 YR I VDPPR+GLD + + Y ++Y+SCN +L RDL LS Sbjct: 373 ---------GYRADAIIVDPPRTGLDKKLIETIMTYQPEKMVYVSCNTSTLARDLVELSK 423 Query: 338 THTIERLALFDQFPYTRHMECGVLLVRK 365 +T++ + D FP+T E V L RK Sbjct: 424 VYTVDYIQSVDMFPHTARTEAVVKLRRK 451 >gi|324994724|gb|EGC26637.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis SK678] Length = 464 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 52/155 (33%), Positives = 79/155 (50%), Gaps = 15/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +L+ Y G G L +A+H +V VE+ +VE +R N A N + N V S++E Q Sbjct: 321 VLDAYSGIGTIGLSVAKHVKQVYGVEVIPEAVENSRKNAAINGITNASYVCASAEEAIQ- 379 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCR 330 N LK+ + I VDPPR GL ++ + V P I YISCN ++ R Sbjct: 380 -------NWLKE----GIQADVILVDPPRKGLTESFIKASVSMEPKKITYISCNVATMAR 428 Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364 D+ + + ++++ D FP T H+EC LLV+ Sbjct: 429 DIKLYQELGYELKKVQPVDLFPQTHHVECVALLVK 463 >gi|168463892|ref|ZP_02697809.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|195633311|gb|EDX51725.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Salmonella enterica subsp. enterica serovar Newport str. SL317] Length = 431 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 57/187 (30%), Positives = 89/187 (47%), Gaps = 27/187 (14%) Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 F Q N +N M LEW+ + +L+L+CG GNF+L LA V+ VE Sbjct: 262 FIQVNEAVNQQMVARALEWLDVRA---EDRVLDLFCGMGNFTLPLATRAASVVGVEGVPA 318 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDP 299 VE R N N ++NV + +E D+ + F + +DP Sbjct: 319 LVEKGRENAIRNGLHNVTFFHENLEE---------------DVTKQPWAKNGFDKVLLDP 363 Query: 300 PRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHME 357 R+G +++ P I+Y+SCNP +L RD ++++ + + RLA+ D FP+T H+E Sbjct: 364 ARAGATGVMRHIIKLKPIRIVYVSCNPATLARDSEALVNAGYEVTRLAMLDMFPHTGHLE 423 Query: 358 CGVLLVR 364 VL R Sbjct: 424 SMVLFER 430 >gi|303246914|ref|ZP_07333190.1| RNA methyltransferase, TrmA family [Desulfovibrio fructosovorans JJ] gi|302491621|gb|EFL51504.1| RNA methyltransferase, TrmA family [Desulfovibrio fructosovorans JJ] Length = 450 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 61/220 (27%), Positives = 101/220 (45%), Gaps = 23/220 (10%) Query: 142 LHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEW 201 +H+ + + + L D+++ER+ + R ++F Q N L Sbjct: 241 VHSVRRAPTTVAIGERQVFALGTDHLEERIG----DVRLRISADAFAQTNT-TAAEKLYA 295 Query: 202 VLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259 V+A G D L ++YCG G +L LA F+ V VE K +V A+ + + N Sbjct: 296 VVAQAAGTAPDRALWDVYCGCGGIALALAPGFETVYGVEADKRAVADAQKSAKLSERENC 355 Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYPH- 317 + + A D+ + + + +DPPR+G D T+ V A P Sbjct: 356 -VFKTGDAATVLA-------------DLAATKPAVVTLDPPRAGADGQTLAAVMDAAPEK 401 Query: 318 ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHME 357 ++Y+SCNP +L RDL ILS +T+ ++ D FP+T H+E Sbjct: 402 LVYVSCNPATLARDLKILSDLYTLTQVTPVDLFPHTAHIE 441 >gi|56414909|ref|YP_151984.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|168261899|ref|ZP_02683872.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|197363837|ref|YP_002143474.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|81359864|sp|Q5PEJ4|RUMA_SALPA RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|56129166|gb|AAV78672.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197095314|emb|CAR60871.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|205349066|gb|EDZ35697.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] Length = 431 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 57/187 (30%), Positives = 89/187 (47%), Gaps = 27/187 (14%) Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 F Q N +N M LEW+ + +L+L+CG GNF+L LA V+ VE Sbjct: 262 FIQVNEAVNQQMVARALEWLDVRA---EDRVLDLFCGMGNFTLPLATRAASVVGVEGVPA 318 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDP 299 VE R N N ++NV + +E D+ + F + +DP Sbjct: 319 LVEKGRENAIRNGLHNVTFFHENLEE---------------DVTKQPWAKNGFDKVLLDP 363 Query: 300 PRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHME 357 R+G +++ P I+Y+SCNP +L RD ++++ + + RLA+ D FP+T H+E Sbjct: 364 ARAGATGVMRHIIKLKPIRIVYVSCNPATLARDSEALVNAGYEVTRLAMLDMFPHTGHLE 423 Query: 358 CGVLLVR 364 VL R Sbjct: 424 SMVLFER 430 >gi|320105759|ref|YP_004181349.1| (Uracil-5)-methyltransferase [Terriglobus saanensis SP1PR4] gi|319924280|gb|ADV81355.1| (Uracil-5)-methyltransferase [Terriglobus saanensis SP1PR4] Length = 450 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 99/397 (24%), Positives = 171/397 (43%), Gaps = 71/397 (17%) Query: 10 YEQQLAEKVDRLRQMMLAFQVP---NLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66 YE+QL K LR M+ VP LQ +EP YR R + D + Sbjct: 83 YEEQLRIKETILRTMLERNGVPVPEKLQTHSAEPWGYRNRIRLRL-----DSF------- 130 Query: 67 TKERMRIDYFMPGSLL--------INALMI--EMMATIRLEPLLRAKLFQIDYLTSQSDQ 116 + R R+ Y M GS + I A ++ A + L+ A+ ++++ S+Q Sbjct: 131 -EGRWRVGYVMRGSRVFMEARECPIAAPLLWRAAQAFVASSQLVPAQSREVEFFCDASEQ 189 Query: 117 AI-VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRAN-----------KTKICLDR 164 + ++L + +++ RE + R A + + + A +K + Sbjct: 190 TVQLSLSLNAAMEEMERESPKQFRKLCDAIRVSVPELSGAGLFVRPVTASTKTSKRGVPA 249 Query: 165 DYVDERLTVA-------------GRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG 211 + +E VA GR + F Q N + ++E L +G G Sbjct: 250 EQAEEIEIVAWGEPKLLYKVDALGRKYTHAIARGGFFQVNRYLVQELVELALGERQG--G 307 Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIA-ANHVNNVKIVRMSSKEFT 270 +L+ G G F+ L F +V+AVE+A+ + + R +A ++H + VR + F Sbjct: 308 LAWDLFAGAGLFTQALVDRFQQVIAVEVAERAFGSLRDFVAHSSH----QAVRETCVGF- 362 Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSL 328 +R+ ++ D+ I VDPPR+GL + G++ I+Y+SC+P++L Sbjct: 363 --LRKRVASTAMRKPDL-------IVVDPPRAGLGEELCGLIAKVEAKEIVYVSCDPETL 413 Query: 329 CRDL-SILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 RDL +L++ + + L L D FP T HME +L R Sbjct: 414 SRDLRKLLNSGYRLAELHLVDLFPQTYHMETVTVLQR 450 >gi|257898308|ref|ZP_05677961.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium Com15] gi|257836220|gb|EEV61294.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium Com15] Length = 457 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 58/214 (27%), Positives = 103/214 (48%), Gaps = 20/214 (9%) Query: 155 ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL- 213 +K K+ RDY++++L G+T YR SF Q N ++ + + + + D+ Sbjct: 258 GDKEKVLYGRDYIEDQLL--GKT--YRISAKSFYQVNTQQAEYLYQTAIEFAELDKKDIV 313 Query: 214 LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273 ++ Y G G L LA D+V +E+ ++E A++N N + NV + Sbjct: 314 IDAYSGIGTIGLSLADRVDKVYGMEVIPEAIEDAQFNALNNKIENV---------HYEVG 364 Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCRD 331 + E+ + ++ I + I VDPPR GLD + ++ P I+YISCNP + RD Sbjct: 365 KAEKVMKKWQEKGI---KPSVIVVDPPRKGLDHHFIESAIEMSPERIVYISCNPATFARD 421 Query: 332 LSILSTT-HTIERLALFDQFPYTRHMECGVLLVR 364 + + + ++++ D FP T H+E V+ Sbjct: 422 AKLFAEAGYAVKKVQPVDLFPQTHHIELVASFVK 455 >gi|322614234|gb|EFY11166.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322620952|gb|EFY17810.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322624015|gb|EFY20849.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322628246|gb|EFY25035.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322633365|gb|EFY30107.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322636058|gb|EFY32766.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322639394|gb|EFY36082.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322643744|gb|EFY40295.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322648856|gb|EFY45303.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322655151|gb|EFY51461.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322658018|gb|EFY54286.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322664119|gb|EFY60318.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322667088|gb|EFY63260.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322673136|gb|EFY69243.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322677873|gb|EFY73936.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322681047|gb|EFY77080.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322685644|gb|EFY81638.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323194783|gb|EFZ79970.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323196534|gb|EFZ81682.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323205053|gb|EFZ90036.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323207746|gb|EFZ92692.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323212702|gb|EFZ97519.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323214815|gb|EFZ99563.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323222544|gb|EGA06909.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323226424|gb|EGA10632.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323230697|gb|EGA14815.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323234952|gb|EGA19038.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323238991|gb|EGA23041.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323244651|gb|EGA28657.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323247267|gb|EGA31233.1| 23S rRNA m(5)U1939 methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323251799|gb|EGA35664.1| 23S rRNA m(5)U1939 methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323257486|gb|EGA41176.1| 23S rRNA m(5)U1939 methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323263271|gb|EGA46808.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323267523|gb|EGA51007.1| 23S rRNA m(5)U1939 methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323272712|gb|EGA56118.1| 23S rRNA m(5)U1939 methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 431 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 57/187 (30%), Positives = 89/187 (47%), Gaps = 27/187 (14%) Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 F Q N +N M LEW+ + +L+L+CG GNF+L LA V+ VE Sbjct: 262 FIQVNEAVNQQMVARALEWLDVRA---EDRVLDLFCGMGNFTLPLATRAASVVGVEGVPA 318 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDP 299 VE R N N ++NV + +E D+ + F + +DP Sbjct: 319 LVEKGRENAIRNGLHNVTFFHENLEE---------------DVTKQPWAKNGFDKVLLDP 363 Query: 300 PRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHME 357 R+G +++ P I+Y+SCNP +L RD ++++ + + RLA+ D FP+T H+E Sbjct: 364 ARAGATGVMRHIIKLKPIRIVYVSCNPATLARDSEALVNAGYEVTRLAMLDMFPHTGHLE 423 Query: 358 CGVLLVR 364 VL R Sbjct: 424 SMVLFER 430 >gi|322412380|gb|EFY03288.1| RNA methyltransferase, TrmA family protein [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 452 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 96/391 (24%), Positives = 158/391 (40%), Gaps = 64/391 (16%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIF-------RSEPIHYRMRAEFHIWHDGDDLYHIM 62 Y +QL K D +RQ + F+ + F +P HYR + +F + G + + Sbjct: 89 YPKQLDFKDDVIRQALKKFKPAGYEQFDIRHTKGMKKPNHYRAKLQFQLRLFGGSVKAGL 148 Query: 63 FDQQTKERMRIDYFMPGSLLINALMIEMMATI-------RLEPLLRAKLFQIDYL----T 111 F Q + + ID+ L+ +AL E++ TI RL + I + Sbjct: 149 FSQGSHRLVPIDH----CLVQDALTQEIINTITQLVDKYRLPVYNERNIAGIRTVMVRKA 204 Query: 112 SQSDQAIVTLIYHR------LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD 165 SDQ + ++ + L+ D + AL+ I R+ + I Sbjct: 205 QASDQVQIVIVSSKEISLAGLIGDVTKAFPQIKTVALN--------INRSKSSDI----- 251 Query: 166 YVDERLTVAGRTLIYRQI--------ENSFTQPNA-GINVHMLEWVLAATKGIQGDLLEL 216 Y +E + G+ IY ++ +F Q N V E V A G +++ Sbjct: 252 YGEETEILWGQEAIYEEVLDYGFALSPRAFYQLNPEQTEVLYGEVVEALDVGTTDHIIDA 311 Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276 YCG G+ L A V ++I ++E A+ N +N + +A + E Sbjct: 312 YCGVGSIGLAFAGKVKSVRGMDIIPEAIEDAQKNAKVMGFDNT---------YYEAGKAE 362 Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSI 334 + YR I VDPPR+GLDD + + Y ++Y+SCN +L RDL Sbjct: 363 DIIPKWYK---QGYRADAIIVDPPRTGLDDKLLKTILRYQPKQMVYVSCNTSTLARDLVQ 419 Query: 335 LSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 L+T + + + D FP+T E V L +K Sbjct: 420 LATVYDVHYIQSVDMFPHTARTEAVVKLQKK 450 >gi|312134353|ref|YP_004001691.1| RNA methyltransferase, TrmA family [Caldicellulosiruptor owensensis OL] gi|311774404|gb|ADQ03891.1| RNA methyltransferase, TrmA family [Caldicellulosiruptor owensensis OL] Length = 451 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 61/212 (28%), Positives = 105/212 (49%), Gaps = 24/212 (11%) Query: 168 DERLTVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYC 218 +E + + G + I +I N SF Q N+ + V+ + I +++ ++Y Sbjct: 252 EEDILIWGSSTIKDKIGNLTFEISPKSFFQVNSVQTEVLYSQVVKYIRNIDAEIVFDVYS 311 Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278 G G S+ +A +V A+EI + +VE A+ + N ++N++ + S+ E E Sbjct: 312 GIGTISMFVAPFCKKVYAIEIVEDAVEDAKKSSKNNGISNIEFICGSA---------EIE 362 Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL- 335 +L I + + +DPPRSG + + + Q P+I+Y+SCNP +L RD SIL Sbjct: 363 IPKLMKSGIIP---QAVILDPPRSGCEKELLESLIKQKIPNIIYVSCNPSTLARDSSILC 419 Query: 336 STTHTIERLALFDQFPYTRHMECGVLLVRKPS 367 S + + + D FP T H+EC LL + S Sbjct: 420 SNGYEVVEVQPVDMFPQTFHVECVALLKKGCS 451 >gi|228950978|ref|ZP_04113099.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229068174|ref|ZP_04201481.1| Uncharacterized RNA methyltransferase [Bacillus cereus F65185] gi|229077781|ref|ZP_04210408.1| Uncharacterized RNA methyltransferase [Bacillus cereus Rock4-2] gi|229177011|ref|ZP_04304406.1| Uncharacterized RNA methyltransferase [Bacillus cereus 172560W] gi|229188691|ref|ZP_04315730.1| Uncharacterized RNA methyltransferase [Bacillus cereus ATCC 10876] gi|228594880|gb|EEK52660.1| Uncharacterized RNA methyltransferase [Bacillus cereus ATCC 10876] gi|228606486|gb|EEK63912.1| Uncharacterized RNA methyltransferase [Bacillus cereus 172560W] gi|228705509|gb|EEL57868.1| Uncharacterized RNA methyltransferase [Bacillus cereus Rock4-2] gi|228714988|gb|EEL66856.1| Uncharacterized RNA methyltransferase [Bacillus cereus F65185] gi|228808705|gb|EEM55203.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 459 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 84/382 (21%), Positives = 165/382 (43%), Gaps = 44/382 (11%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQ------IFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63 Y++QL +K D + Q + +++ + P HYR +++ + + + ++ Sbjct: 96 YKEQLNQKRDIVVQAFEKYMKNSMEEKIRPTLGMENPWHYRNKSQLQVGRKDEKVITGLY 155 Query: 64 DQQTKERMRIDYFM-------PGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTS-QSD 115 Q + + + I + M + ++ ++ ++ +I E + + I T+ Q+ Sbjct: 156 KQNSHQLIDIAHCMIQHKATNEATKVVRRILEKLNVSIYNEKKQKGLVRTIVTRTAVQTG 215 Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175 + VTLI + + ++ + A K +Q + + I + D+ +AG Sbjct: 216 EVQVTLITTKEELPNKEQFIAEVQKQMPAVKSIMQNVNWRKTSVI-----FGDKTFKLAG 270 Query: 176 RTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSL 225 + +I + + +F Q N V + A + GD +++ YCG G L Sbjct: 271 KEVIQETLGDLSFELSARAFFQLNPEQTVVLYNEAKKAA-ALTGDEKIVDAYCGVGTIGL 329 Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285 LA V +++ ++ AR N + N K ++++ +E Sbjct: 330 WLANDAAEVRGMDVIPEAIADARKNAKRHGFTNTKYEAGKAEQWLPKWVKE--------- 380 Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMV-QAYP-HILYISCNPDSLCRDLSILSTTHTIER 343 +R I VDPPR+G DD + + + P ++Y+SCNP SL RD+ L ++ +E Sbjct: 381 ---GWRPDVIVVDPPRTGCDDKLLETILKVKPKQVVYVSCNPSSLARDVQALMKSYEVEY 437 Query: 344 LALFDQFPYTRHMECGVLLVRK 365 + D FP+T H+E V LVRK Sbjct: 438 VQPVDMFPHTAHVENVVKLVRK 459 >gi|168820323|ref|ZP_02832323.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205342808|gb|EDZ29572.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|320087382|emb|CBY97147.1| hypothetical protein SENTW_3066 [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 431 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 57/187 (30%), Positives = 89/187 (47%), Gaps = 27/187 (14%) Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 F Q N +N M LEW+ + +L+L+CG GNF+L LA V+ VE Sbjct: 262 FIQVNEAVNQQMVARALEWLDVRA---EDRVLDLFCGMGNFTLPLATRAASVVGVEGVPA 318 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDP 299 VE R N N ++NV + +E D+ + F + +DP Sbjct: 319 LVEKGRENAIRNGLHNVTFFHENLEE---------------DVTKQPWAKNGFDKVLLDP 363 Query: 300 PRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHME 357 R+G +++ P I+Y+SCNP +L RD ++++ + + RLA+ D FP+T H+E Sbjct: 364 ARAGATGVMRHIIKLKPIRIVYVSCNPATLARDSEALVNAGYEVTRLAMLDMFPHTGHLE 423 Query: 358 CGVLLVR 364 VL R Sbjct: 424 SMVLFER 430 >gi|187932429|ref|YP_001884796.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum B str. Eklund 17B] gi|187720582|gb|ACD21803.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum B str. Eklund 17B] Length = 450 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 58/216 (26%), Positives = 99/216 (45%), Gaps = 31/216 (14%) Query: 157 KTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD---- 212 K + RDY+ E+L L ++ SF Q N E + + + G Sbjct: 258 KVNVLYGRDYIQEKLL----GLDFKISPFSFFQ----TNTKGAESLYSLVRDFMGSSENK 309 Query: 213 -LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271 + +LYCG G ++A + +V+ +E+ + +VEAA+ N N +NN + + E + Sbjct: 310 VVFDLYCGTGTIGQIVAPNAKKVVGIELIEEAVEAAKENAKLNGLNNCEFLAGDVAEIIK 369 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLC 329 ++ + + I +DPPRSG+ + V + P I+Y+SCNP +L Sbjct: 370 TVKDKPDI---------------IILDPPRSGVHPKALDYVIKFNAPEIVYVSCNPKTLV 414 Query: 330 RDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364 DL +L + I + + D FP T H E V L++ Sbjct: 415 TDLKVLIERGYKIIQTQVKDMFPNTPHAETIVKLIK 450 >gi|197119265|ref|YP_002139692.1| RNA methyltransferase, TrmA family [Geobacter bemidjiensis Bem] gi|197088625|gb|ACH39896.1| RNA methyltransferase, TrmA family [Geobacter bemidjiensis Bem] Length = 572 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 66/193 (34%), Positives = 94/193 (48%), Gaps = 21/193 (10%) Query: 179 IYRQIENSFTQPNAGINVHMLEWV--LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLA 236 I+ +SF Q N+G + E V LA KG + ++++YCG G SL LA V+ Sbjct: 394 IFNLSPHSFFQVNSGAARIIYEKVRELANLKGTE-RVIDVYCGIGGISLYLADQAREVVG 452 Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296 +E + +V A N A NHV N E A+ E D+ I Sbjct: 453 IEFVEAAVADATINAALNHVENCHF------EAGDAVHLIDEIGEEGGADL-------IV 499 Query: 297 VDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTT--HTIERLALFDQFPY 352 ++PPR G D+ + V A P I+Y+SC+P++L RDL ILS T+E + D FP Sbjct: 500 LNPPRKGCDEKVLRSVAAINPPRIIYVSCSPETLARDLDILSGLGYRTVE-VQPVDMFPQ 558 Query: 353 TRHMECGVLLVRK 365 T H+E LL +K Sbjct: 559 TVHVEDVALLEKK 571 >gi|295114059|emb|CBL32696.1| 23S rRNA m(5)U-1939 methyltransferase [Enterococcus sp. 7L76] Length = 457 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 48/155 (30%), Positives = 80/155 (51%), Gaps = 15/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G L LA+ +V +E+ + +V+ A NN K+ + + FT Sbjct: 312 VVDAYCGIGTIGLTLAQDAKQVYGIEVIEEAVKDAE--------NNAKLNNIENATFTAG 363 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330 + E L + + + + VDPPR GLD V +++ P I+Y+SCNP +L R Sbjct: 364 LAEE----LLPKLVENGLQPDVVVVDPPRKGLDGQLVNTLIETQPERIVYVSCNPATLAR 419 Query: 331 DLSILS-TTHTIERLALFDQFPYTRHMECGVLLVR 364 D+++L+ + + + D FP T H+EC LL R Sbjct: 420 DIALLTEGGYEAKEIQPVDNFPQTTHIECVGLLTR 454 >gi|228995690|ref|ZP_04155353.1| Uncharacterized RNA methyltransferase [Bacillus mycoides Rock3-17] gi|229003319|ref|ZP_04161149.1| Uncharacterized RNA methyltransferase [Bacillus mycoides Rock1-4] gi|228757937|gb|EEM07152.1| Uncharacterized RNA methyltransferase [Bacillus mycoides Rock1-4] gi|228764067|gb|EEM12951.1| Uncharacterized RNA methyltransferase [Bacillus mycoides Rock3-17] Length = 465 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 51/149 (34%), Positives = 77/149 (51%), Gaps = 15/149 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G+ SL LA+ +V VEI ++E A N A N+ M++ EF Sbjct: 322 VIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNN--------MTNAEFAVG 373 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330 N K+ I TI VDPPR G D+A + ++ P ++Y+SCNP +L R Sbjct: 374 EAEVVIPNWYKEGVIAD----TIVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLAR 429 Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMEC 358 DL +L + + + D FP+T H+EC Sbjct: 430 DLKVLEEGGYKTQEVQPVDMFPHTTHVEC 458 >gi|229028277|ref|ZP_04184413.1| Uncharacterized RNA methyltransferase [Bacillus cereus AH1271] gi|228733041|gb|EEL83887.1| Uncharacterized RNA methyltransferase [Bacillus cereus AH1271] Length = 459 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 84/382 (21%), Positives = 166/382 (43%), Gaps = 44/382 (11%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQ------IFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63 Y++QL +K D + Q + +L+ + P HYR +++ + + + ++ Sbjct: 96 YKEQLNQKRDIVVQAFEKYMNNSLEEKIRPTLGMENPWHYRNKSQLQVGRKDEKVITGLY 155 Query: 64 DQQTKERMRIDYFM-------PGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTS-QSD 115 Q + + + I + M + ++ ++ ++ +I E + + I T+ Q+ Sbjct: 156 KQNSHQLIDIAHCMIQHKATNEATKVVRRILEKLNVSIYNEKKQKGLVRTIVTRTAVQTG 215 Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175 + VTLI + + ++ + + K +Q + + I + D+ +AG Sbjct: 216 EVQVTLITTKEELPNKEQFIAEVQKQMPSVKSIMQNVNWRKTSVI-----FGDKTFKLAG 270 Query: 176 RTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSL 225 + +I + + +F Q N V + + A + GD +++ YCG G L Sbjct: 271 KEVIQETLGDLSFELSARAFFQLNPEQTVVLYDEAKKAA-ALTGDEKIVDAYCGVGTIGL 329 Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285 LA V +++ ++ AR N + N K ++++ +E Sbjct: 330 WLANDAAEVRGMDVIPEAIADARKNAKRHGFTNTKYEAGKAEQWLPKWVKE--------- 380 Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMV-QAYP-HILYISCNPDSLCRDLSILSTTHTIER 343 +R I VDPPR+G DD + + + P ++Y+SCNP SL RD+ L ++ +E Sbjct: 381 ---GWRPDVIVVDPPRTGCDDKLLETILKVKPKQVVYVSCNPSSLARDVQALMKSYEVEY 437 Query: 344 LALFDQFPYTRHMECGVLLVRK 365 + D FP+T H+E V LVRK Sbjct: 438 VQPVDMFPHTAHVENVVKLVRK 459 >gi|228989496|ref|ZP_04149481.1| Uncharacterized RNA methyltransferase [Bacillus pseudomycoides DSM 12442] gi|228770221|gb|EEM18800.1| Uncharacterized RNA methyltransferase [Bacillus pseudomycoides DSM 12442] Length = 465 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 51/149 (34%), Positives = 77/149 (51%), Gaps = 15/149 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G+ SL LA+ +V VEI ++E A N A N+ M++ EF Sbjct: 322 VIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNN--------MTNAEFAVG 373 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330 N K+ I TI VDPPR G D+A + ++ P ++Y+SCNP +L R Sbjct: 374 EAEVVIPNWYKEGVIAD----TIVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLAR 429 Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMEC 358 DL +L + + + D FP+T H+EC Sbjct: 430 DLKVLEEGGYKTQEVQPVDMFPHTTHVEC 458 >gi|226954324|ref|ZP_03824788.1| 23S rRNA (uracil-5-)-methyltransferase(23S rRNA(M-5-U1939)-methyltransferase) [Acinetobacter sp. ATCC 27244] gi|226834902|gb|EEH67285.1| 23S rRNA (uracil-5-)-methyltransferase(23S rRNA(M-5-U1939)-methyltransferase) [Acinetobacter sp. ATCC 27244] Length = 463 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 60/194 (30%), Positives = 94/194 (48%), Gaps = 32/194 (16%) Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLAR---HFDRVLAVEIAKP 242 FTQ N+ +N M++ + +G+ +L+L+CG GNFSL LAR +V+ VE + Sbjct: 286 FTQVNSAVNARMIQLACELLQLKEGERVLDLFCGLGNFSLPLARCVGDTGQVIGVEASDE 345 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDP 299 V A N AN +N F+Q + KD H + F + +DP Sbjct: 346 MVLRATENAKANSLNQAIF-------FSQDL--------TKDFSHHPWAKQGFDALLIDP 390 Query: 300 PRSGLDDATVGMVQAYP-----HILYISCNPDSLCRDLSILST-THTIERLALFDQFPYT 353 PRSG ++Q P I+Y+SCNP +L RD +L+ + +++ A+ D F +T Sbjct: 391 PRSG----AFEVMQYVPSFGANRIVYVSCNPSTLARDAGVLAQHGYQLKKAAVMDMFTHT 446 Query: 354 RHMECGVLLVRKPS 367 H+E L + S Sbjct: 447 EHVESIALFEKNES 460 >gi|313899252|ref|ZP_07832768.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium sp. HGF2] gi|312955932|gb|EFR37584.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium sp. HGF2] Length = 453 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 49/156 (31%), Positives = 79/156 (50%), Gaps = 16/156 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +L+ YCG G + ++R +V+ VEI + +VE A+ N N ++N++ V + + Sbjct: 308 VLDAYCGIGTIGMYVSRFVKQVIGVEINRDAVEDAKINAKINQISNIRFVCEDAGRYMTR 367 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSG-LDDATVGMVQAYP-HILYISCNPDSLCR 330 + E++ R + +DPPRSG +D +V+ P +LYISCNP + R Sbjct: 368 LAAEKK------------RLDVVIMDPPRSGSSEDFIKSLVRMKPKQVLYISCNPQTQIR 415 Query: 331 DLSILSTT--HTIERLALFDQFPYTRHMECGVLLVR 364 DL + +L D FP+T H+E V LVR Sbjct: 416 DLQMFERMGYRVQGKLVPVDMFPHTVHVESIVKLVR 451 >gi|295394400|ref|ZP_06804624.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Brevibacterium mcbrellneri ATCC 49030] gi|294972752|gb|EFG48603.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Brevibacterium mcbrellneri ATCC 49030] Length = 379 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 57/195 (29%), Positives = 96/195 (49%), Gaps = 28/195 (14%) Query: 185 NSFTQPN----AGINVHMLEWV-----LAATKGIQGDLLELYCGNGNFSLVLARHFDRVL 235 SF Q N +G+ + EWV A + G + +L+CG G F+L +A +V Sbjct: 197 QSFVQTNTVVASGLYEQVREWVSKAQAPATSHGRDLRVWDLFCGVGGFALHVAGPGRQVT 256 Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295 VE+A +VE+AR +A + + + + +++ R+ ++ D+ + Sbjct: 257 GVEVAPAAVESAR-EVAGENDLGLNFICADAAQWS------RQQTQVPDV---------L 300 Query: 296 FVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYT 353 V+PPR G+ + G V+ PH++Y SCNP +L DL+ + + IE+ D FP+T Sbjct: 301 IVNPPRRGMGEDMAGWVEQSGIPHVIYSSCNPRTLAADLAKMP-GYRIEQARFLDMFPHT 359 Query: 354 RHMECGVLLVRKPSG 368 H E V L R+ G Sbjct: 360 SHAEVVVRLARQAGG 374 >gi|294141950|ref|YP_003557928.1| 23S rRNA (Uracil-5-)-methyltransferase RumA [Shewanella violacea DSS12] gi|293328419|dbj|BAJ03150.1| 23S rRNA (Uracil-5-)-methyltransferase RumA [Shewanella violacea DSS12] Length = 453 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 64/239 (26%), Positives = 112/239 (46%), Gaps = 32/239 (13%) Query: 144 ARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIEN---------SFTQPNAGI 194 A +++ LI + N++ + L D + L + L Y +++N +F Q NA I Sbjct: 232 ALSHKVSLIVQGNESDLTLIGDEA-KTLVIGSNELPYYELDNGIKLSFTPGNFVQVNAEI 290 Query: 195 NVHML----EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN 250 N M+ +W+ +L+L+CG GNFSL LA+ V+ VE V+ A+ N Sbjct: 291 NNAMVNQAVDWLSVEP---HERVLDLFCGVGNFSLPLAKKGASVIGVEGVPEMVQQAKLN 347 Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310 + ++NV + + + +E ++ + +DP R+G ++ Sbjct: 348 ATLSQLDNVSFFHT---DLSADLSKESWLGKV----------DKLLLDPARAGAFESLQW 394 Query: 311 MVQAYPH-ILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVLLVRKPS 367 + + P I+Y+SC+P +L RD +L + + +LAL D FP T H+E L K S Sbjct: 395 LKKMKPKSIVYVSCDPATLARDSEPLLKHGYKLTKLALIDMFPQTHHIEAMALFELKGS 453 >gi|148244456|ref|YP_001219150.1| RNA methyltransferase [Candidatus Vesicomyosocius okutanii HA] gi|146326283|dbj|BAF61426.1| RNA methyltransferase, TrmA family [Candidatus Vesicomyosocius okutanii HA] Length = 439 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 56/196 (28%), Positives = 92/196 (46%), Gaps = 22/196 (11%) Query: 177 TLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVL 235 +I + F Q N +N M+ + + + D +++L+CG GNF+L +AR+ V+ Sbjct: 259 NIIMEFLPTDFVQVNFKLNQQMVSLAVELLELNESDKVIDLFCGLGNFTLPIARYAKYVV 318 Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295 +E VE A+YN N +NNV R + + F K + Sbjct: 319 GIEGDLGLVERAKYNAEKNSINNVDFYR------SDLCKEVVGFEWFK-----GKTYNKA 367 Query: 296 FVDPPRSGLDDATVGMVQAYPH-----ILYISCNPDSLCRD-LSILSTTHTIERLALFDQ 349 +DP RSG + +V+ P ++Y+SCNP +L RD L ++ T+E + D Sbjct: 368 LIDPSRSG----AIEIVELLPKLGVTRLVYVSCNPATLARDTLKLIKLGFTLETAGVIDM 423 Query: 350 FPYTRHMECGVLLVRK 365 FP T H+E L V++ Sbjct: 424 FPQTSHVESIALFVKR 439 >gi|254520598|ref|ZP_05132654.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium sp. 7_2_43FAA] gi|226914347|gb|EEH99548.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium sp. 7_2_43FAA] Length = 454 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 51/163 (31%), Positives = 81/163 (49%), Gaps = 17/163 (10%) Query: 208 GIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265 G+ G+ + + YCG G +L L++ +V VEI K +++ A N N+V N + Sbjct: 304 GLTGEEVVFDAYCGTGTITLFLSQKAKKVYGVEIIKAAIDNANENAKINNVKNAEFFVGK 363 Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYPH-ILYISC 323 S+E + D+ + I VDPPR G D + + A P+ ++Y+SC Sbjct: 364 SEEI------------IPDLIDKGIIPEVIVVDPPRKGCDIKLLEAIGDAKPNRVVYVSC 411 Query: 324 NPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRK 365 +P +L RDL IL + ++ D FP+T H+EC LL K Sbjct: 412 DPSTLARDLKILEEKGYKTAKVQPVDMFPHTSHVECVALLKNK 454 >gi|153824701|ref|ZP_01977368.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Vibrio cholerae MZO-2] gi|149741657|gb|EDM55686.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Vibrio cholerae MZO-2] Length = 344 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 47/155 (30%), Positives = 77/155 (49%), Gaps = 18/155 (11%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + +L+CG G F+L A V +EI ++ +A+ + ++N+ + S +F+Q+ Sbjct: 206 MWDLFCGVGGFALHCAAPDTAVTGIEIEPEAIASAQRSAQMMGIDNLSFAALDSAKFSQS 265 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCR 330 E + V+PPR GL ++A HILY SCNP ++ + Sbjct: 266 QMSAPEL---------------VLVNPPRRGLGSELTAQLEALAPKHILYSSCNPQTMAK 310 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 D++ L++ I R+ FD FP+T H E LLVRK Sbjct: 311 DIAELASYQMI-RVQWFDMFPHTNHAEVLTLLVRK 344 >gi|28868899|ref|NP_791518.1| TrmA family RNA methyltransferase [Pseudomonas syringae pv. tomato str. DC3000] gi|37088361|sp|Q885Y8|RUMA_PSESM RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|28852138|gb|AAO55213.1| RNA methyltransferase, TrmA family [Pseudomonas syringae pv. tomato str. DC3000] Length = 451 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 56/185 (30%), Positives = 88/185 (47%), Gaps = 23/185 (12%) Query: 185 NSFTQPNAGINVHMLE----WVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240 F Q NA +N M+E W+ A +++L+CG GNF+L LA V+AVE Sbjct: 279 GDFIQVNAAVNTAMIEQALHWLAPAA---DERVMDLFCGLGNFALPLASLAKDVVAVEGV 335 Query: 241 KPSVEAARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299 VE A N +N ++NV+ + S+ T A D + F + +DP Sbjct: 336 ATMVERAAVNAMSNDLHNVRFFQADLSQPLTHA-------------DWAAEGFSAVLLDP 382 Query: 300 PRSGLDDATVGMVQAYPH-ILYISCNPDSLCRD-LSILSTTHTIERLALFDQFPYTRHME 357 PR G + + + +LY+SCNP +L RD + ++ + ++R + D FP T H+E Sbjct: 383 PRDGAFEVVRQIRKTGAQRLLYVSCNPATLARDTVELVKQGYRLKRAGILDMFPQTAHVE 442 Query: 358 CGVLL 362 L Sbjct: 443 AMALF 447 >gi|200388031|ref|ZP_03214643.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|199605129|gb|EDZ03674.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Salmonella enterica subsp. enterica serovar Virchow str. SL491] Length = 431 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 58/187 (31%), Positives = 87/187 (46%), Gaps = 27/187 (14%) Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 F Q N +N M LEW+ + +L+L+CG GNF+L LA V+ VE Sbjct: 262 FIQINEAVNQQMVARALEWLDVRA---EDRVLDLFCGMGNFTLPLATRAASVVGVEGVPA 318 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDP 299 VE R N N ++NV + +E D+ + F + +DP Sbjct: 319 LVEKGRENAIRNGLHNVTFFHENLEE---------------DVTKQPWAKNGFDKVLLDP 363 Query: 300 PRSGLDDATVGMVQAYP-HILYISCNPDSLCRDLSILSTT-HTIERLALFDQFPYTRHME 357 R+G +++ P I+Y+SCNP +L RD L+ + + RLA+ D FP+T H+E Sbjct: 364 ARAGATGVMRHIIKLKPIRIVYVSCNPATLARDSEALANAGYEVTRLAMLDMFPHTGHLE 423 Query: 358 CGVLLVR 364 VL R Sbjct: 424 SMVLFER 430 >gi|77919963|ref|YP_357778.1| RNA methyltransferase [Pelobacter carbinolicus DSM 2380] gi|77546046|gb|ABA89608.1| 23S rRNA m(5)U-1939 methyltransferase [Pelobacter carbinolicus DSM 2380] Length = 489 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 51/154 (33%), Positives = 79/154 (51%), Gaps = 15/154 (9%) Query: 214 LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273 L+LYCG G +L LA+ RV+ VE+ + +V A+ N A N++ N + + + E Sbjct: 341 LDLYCGIGGIALHLAQDAGRVIGVEMVEDAVRNAQQNAAMNNLANCRFLAGDTAEL---- 396 Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLD-DATVGMVQAYPH-ILYISCNPDSLCRD 331 L+D+ + T ++PPRSG D + + Q P I+Y+SCNPD+L RD Sbjct: 397 --------LQDLIVDLPSLATAVLNPPRSGCDVEVLQAVTQLQPRTIIYVSCNPDTLARD 448 Query: 332 LSILST-THTIERLALFDQFPYTRHMECGVLLVR 364 L+ L + + D FP T H+E LV+ Sbjct: 449 LAELQKLGYRTAEIQPVDMFPQTAHVESVARLVK 482 >gi|331016787|gb|EGH96843.1| 23S rRNA m(5)U1939 methyltransferase [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 451 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 56/185 (30%), Positives = 88/185 (47%), Gaps = 23/185 (12%) Query: 185 NSFTQPNAGINVHMLE----WVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240 F Q NA +N M+E W+ A +++L+CG GNF+L LA V+AVE Sbjct: 279 GDFIQVNAAVNTAMIEQALHWLAPAA---DERVMDLFCGLGNFALPLASLAKDVVAVEGV 335 Query: 241 KPSVEAARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299 VE A N +N ++NV+ + S+ T A D + F + +DP Sbjct: 336 ATMVERAAVNAMSNDLHNVRFFQADLSQPLTHA-------------DWAAEGFSAVLLDP 382 Query: 300 PRSGLDDATVGMVQAYPH-ILYISCNPDSLCRD-LSILSTTHTIERLALFDQFPYTRHME 357 PR G + + + +LY+SCNP +L RD + ++ + ++R + D FP T H+E Sbjct: 383 PRDGAFEVVRQIRKTGAQRLLYVSCNPATLARDTVELVKQGYRLKRAGILDMFPQTAHVE 442 Query: 358 CGVLL 362 L Sbjct: 443 AMALF 447 >gi|291286810|ref|YP_003503626.1| (Uracil-5)-methyltransferase [Denitrovibrio acetiphilus DSM 12809] gi|290883970|gb|ADD67670.1| (Uracil-5)-methyltransferase [Denitrovibrio acetiphilus DSM 12809] Length = 387 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 57/183 (31%), Positives = 92/183 (50%), Gaps = 23/183 (12%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSF Q N I+ + ++VL ++G G LELYCG+G +L +AR +++ AVE PS+ Sbjct: 225 NSFLQGNRYISNALQDFVLEHSEGRLG--LELYCGSGYLTLPMARKCEKIDAVESYAPSI 282 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 A N +V + E + M + + +D+ I DPPR+G+ Sbjct: 283 RLAERTKLKNVTWHVAM-----SENMKGMGK-------RSLDM-------IVADPPRTGM 323 Query: 305 DDATVGMVQAYP--HILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362 + ++ +YISC+P++ RD + LS + IE + + D FP + H+E LL Sbjct: 324 EKEVCNYIKNSDADRFIYISCDPNTFARDAARLSEFYKIEHMVICDMFPGSYHLETMALL 383 Query: 363 VRK 365 RK Sbjct: 384 RRK 386 >gi|1209277|gb|AAA91052.1| pCTHom1 [Chlamydia trachomatis] Length = 333 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 69/255 (27%), Positives = 117/255 (45%), Gaps = 43/255 (16%) Query: 124 HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQI 183 LLD +I + L AR +T ++ ++L++ GR+ ++ Sbjct: 106 QSLLDSGLPITSIFWEEKLSARNSPTTF-----RTTHLYGAPFLKQQLSIDGRSSLFHIR 160 Query: 184 ENSFTQPNAGINVHMLEWVLAATKGIQG-----------DLLELYCGNGNFSLVLARHFD 232 SF QP + L A K IQ LL+LYCG G ++LA + Sbjct: 161 PRSFFQPQS----------LQAEKIIQTIKEFIDPCGEETLLDLYCGRGTIGILLAPYVK 210 Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292 +++ VE+ +V +A+ NI N V ++++ +K+F + R E L DI Sbjct: 211 KIIGVELVPDAVASAQENIQLNSV-DMEVFLEDAKQFCK--RNE----NLPSPDI----- 258 Query: 293 KTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQ 349 + +DPPR G+ + + + A I+Y+SCNP + ++ S+L + + + DQ Sbjct: 259 --VVIDPPRCGMQNKALKYLLRMAPKKIVYVSCNPLTQIQECSVLVEQGYQLRHMQPIDQ 316 Query: 350 FPYTRHMECGVLLVR 364 FP+T H+E VLL R Sbjct: 317 FPHTNHLENIVLLER 331 >gi|297156656|gb|ADI06368.1| putative RNA methyltransferase [Streptomyces bingchenggensis BCW-1] Length = 447 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 68/212 (32%), Positives = 104/212 (49%), Gaps = 29/212 (13%) Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGN 222 R +V ER AGRT +R E F Q + ++E V+ +GD+ L+LYCG G Sbjct: 255 RPFVRER--AAGRT--WRVGEGGFWQVHPKAADLLVEAVMQGLMPRKGDMALDLYCGVGL 310 Query: 223 FSLVLARHFDR---VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279 F+ LA VL +E K +VE AR+N+ ++ VR+ + Q + R Sbjct: 311 FAGALAERVGERGAVLGIESGKRAVEDARHNL-----QDLDRVRIEHGKVEQILPR---- 361 Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSIL-S 336 + + D+ I +DPPR+G TV + + I Y++C+P +L RDL+ Sbjct: 362 TGITEADL-------IVLDPPRAGAGKETVARLASLGPRRIAYVACDPAALARDLTYFRE 414 Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVRKPSG 368 + RL FD FP T H+EC +L +P+G Sbjct: 415 AGYVPRRLRAFDLFPVTHHVECVAIL--EPAG 444 >gi|160872624|ref|ZP_02062756.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Rickettsiella grylli] gi|159121423|gb|EDP46761.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Rickettsiella grylli] Length = 443 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 69/230 (30%), Positives = 108/230 (46%), Gaps = 21/230 (9%) Query: 144 ARKYQIQLIGRAN--KTKICL---DRDYVDERL-TVAGRTLIYRQIENSFTQPNAGINVH 197 A+KY +QL + KT C+ + + RL A R+L + + F Q NA IN Sbjct: 226 AKKYSVQLYLQPGNEKTTHCIWPENPQLLSYRLQNKAHRSLEFFFEPHHFIQINATINQA 285 Query: 198 MLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV 256 M++ + D +L+L+CG GNFSL LA V+ +E VE A+ N N + Sbjct: 286 MIQHAIELLSPHFSDRILDLFCGLGNFSLPLALRCQSVVGIEGHSALVEQAKINARHNAI 345 Query: 257 NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ-AY 315 NN + + + T ++ +E + F I +DPPRSG + + + Sbjct: 346 NNTQFY---TADLTGSILKEVWAQQ---------TFNKILLDPPRSGALEVIQQIARWKV 393 Query: 316 PHILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 ++YISCNP +L RD ++ + +ER + D FP T H E L + Sbjct: 394 EKMVYISCNPATLARDSEELIKQGYHLERAGIMDMFPQTHHSEAICLFTQ 443 >gi|258622549|ref|ZP_05717571.1| 23S rRNA (uracil-5-)-methyltransferase rumB [Vibrio mimicus VM573] gi|258585249|gb|EEW09976.1| 23S rRNA (uracil-5-)-methyltransferase rumB [Vibrio mimicus VM573] Length = 375 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 54/184 (29%), Positives = 86/184 (46%), Gaps = 19/184 (10%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 SF Q N + + A + I + +L+CG G F+L A V +EI + Sbjct: 208 KSFFQTNPKVAEQLYATARAWVREITPTQMWDLFCGVGGFALHCAAPDTAVTGIEIEPEA 267 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 + +A+ + ++N+ + S +F+Q+ E + V+PPR G Sbjct: 268 IASAQRSAQMMGIDNLSFAALDSAKFSQSQMSAPEL---------------VLVNPPRRG 312 Query: 304 LDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVL 361 L ++A HILY SCNP ++ +D++ LS+ I R+ FD FP+T H E L Sbjct: 313 LGSELTAQLEALVPKHILYSSCNPQTMVKDIAELSSYQMI-RVQWFDMFPHTDHAEVLTL 371 Query: 362 LVRK 365 LVRK Sbjct: 372 LVRK 375 >gi|324993953|gb|EGC25872.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis SK405] gi|327463215|gb|EGF09536.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis SK1] gi|327489947|gb|EGF21736.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis SK1058] Length = 465 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 52/156 (33%), Positives = 80/156 (51%), Gaps = 15/156 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +L+ Y G G L +A+H +V VE+ +VE +R N A N + N V S++E Q Sbjct: 321 VLDAYSGIGTIGLSVAKHVKQVYGVEVIPEAVENSRKNAAINGITNASYVCASAEEAIQ- 379 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCR 330 N LK+ + I VDPPR GL ++ + V P I YISCN ++ R Sbjct: 380 -------NWLKE----GIQADVILVDPPRKGLTESFIKASVSMEPKKITYISCNVATMAR 428 Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVRK 365 D+ + + ++++ D FP T H+EC LLV++ Sbjct: 429 DIKLYQELGYELKKVQPVDLFPQTHHVECVSLLVKR 464 >gi|291541472|emb|CBL14582.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Ruminococcus bromii L2-63] Length = 494 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 50/164 (30%), Positives = 89/164 (54%), Gaps = 22/164 (13%) Query: 213 LLELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271 +L+ YCG G ++ A++ V+ E+ +V A N AN++ N++ + + EF Sbjct: 244 VLDTYCGIGTIGIIAAKNGAGNVIGAELNGDAVRDAIVNARANNLKNIRFYKADAGEF-- 301 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD----DATVGMVQAYPHILYISCNPDS 327 MR + + D+ +F+DPPR+G D D+ + M + ++Y+SCNP++ Sbjct: 302 -MREATDEDEKPDV---------VFMDPPRAGSDRKFLDSLIKM--SPKKVVYVSCNPET 349 Query: 328 LCRDLSILS--TTHTIERLALFDQFPYTRHMECGVLLV-RKPSG 368 L RDL+ L+ + + +++ D FP+T H+E VLL +KP G Sbjct: 350 LARDLAYLTQNSPYKAQKIQPVDMFPHTAHIETVVLLSHKKPDG 393 >gi|302875488|ref|YP_003844121.1| RNA methyltransferase, TrmA family [Clostridium cellulovorans 743B] gi|307687940|ref|ZP_07630386.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium cellulovorans 743B] gi|302578345|gb|ADL52357.1| RNA methyltransferase, TrmA family [Clostridium cellulovorans 743B] Length = 455 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 61/236 (25%), Positives = 112/236 (47%), Gaps = 25/236 (10%) Query: 137 RLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINV 196 +++ LH + ++ K+ +DY+ E L L ++ SF Q N+ Sbjct: 240 KIKGILHTINDSFSDAVKIDELKVLYGQDYITENLL----GLNFKISPLSFFQTNSK-GA 294 Query: 197 HMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAAN 254 L ++ G D + +LYCG G ++A +V+ +E+ + +V+AA N N Sbjct: 295 EKLYSIVKEYIGESDDKVVFDLYCGTGTIGQIVAPKAKKVIGLELIEEAVKAAEINAELN 354 Query: 255 HVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA 314 + N K + E + ++ + + TI +DPPR+G+ A + V Sbjct: 355 GLTNCKFIAGDVAETIKTIKEKPD---------------TIILDPPRAGVSSAAMKYVID 399 Query: 315 Y--PHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRKPS 367 + +I+Y+SCNP+SL +L L + + ++++ + D FP+T H+E V L RK S Sbjct: 400 FDAKNIVYVSCNPESLVVNLKELEAAGYRVDKVRVKDMFPHTPHVETVVRLQRKHS 455 >gi|229083730|ref|ZP_04216051.1| Uncharacterized RNA methyltransferase [Bacillus cereus Rock3-44] gi|228699588|gb|EEL52252.1| Uncharacterized RNA methyltransferase [Bacillus cereus Rock3-44] Length = 458 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 50/164 (30%), Positives = 82/164 (50%), Gaps = 15/164 (9%) Query: 204 AATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVR 263 AA G + +++ YCG G L LA V +++ ++E A+ N + N K Sbjct: 308 AALTGTE-KIVDAYCGVGTIGLWLANDAAEVRGMDVIPEAIEDAKKNARRHGFTNTKYEA 366 Query: 264 MSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYI 321 ++++ +E +R I VDPPR+G DD + +++ P ++Y+ Sbjct: 367 GKAEQWLPKWVKE------------GWRPDVIVVDPPRTGCDDKLLETILKVKPKQVVYV 414 Query: 322 SCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 SCNP SL RD+ L ++ +E + D FP+T H+E V LVRK Sbjct: 415 SCNPSSLARDVKALMKSYEVEYVQPVDMFPHTAHVENVVKLVRK 458 >gi|260551956|ref|ZP_05825818.1| SAM-dependent methyltransferase [Acinetobacter sp. RUH2624] gi|260405359|gb|EEW98854.1| SAM-dependent methyltransferase [Acinetobacter sp. RUH2624] Length = 463 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 59/184 (32%), Positives = 95/184 (51%), Gaps = 32/184 (17%) Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHF---DRVLAVEIAKP 242 FTQ N +N M++ + QG+ +L+L+CG GNFSL LAR +V+ VE ++ Sbjct: 286 FTQVNGTVNEQMVQLACELLQLQQGERVLDLFCGLGNFSLPLARCVGANGQVVGVEASEE 345 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDP 299 V+ A N NN+ V S++ T KD HS+ F + +DP Sbjct: 346 MVQRATDNAK---CNNLVQVNFFSQDLT------------KDFSHHSWANQGFDALLIDP 390 Query: 300 PRSGLDDATVGMVQAYPH-----ILYISCNPDSLCRDLSILST-THTIERLALFDQFPYT 353 PR+G + ++Q P+ I+Y+SCNP +L RD +L+ + +++ A+ D F +T Sbjct: 391 PRAGAYE----IMQYVPNFGAKRIVYVSCNPATLARDAGVLAQHGYKLKKAAVMDMFTHT 446 Query: 354 RHME 357 H+E Sbjct: 447 EHVE 450 >gi|168181980|ref|ZP_02616644.1| 23S rRNA -methyltransferase RumA [Clostridium botulinum Bf] gi|237796828|ref|YP_002864380.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum Ba4 str. 657] gi|182674796|gb|EDT86757.1| 23S rRNA -methyltransferase RumA [Clostridium botulinum Bf] gi|229263636|gb|ACQ54669.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum Ba4 str. 657] Length = 461 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 48/155 (30%), Positives = 76/155 (49%), Gaps = 15/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + + YCG G SL L++ +V VEI K +++ A N N+VNN + S+E Sbjct: 316 VFDAYCGTGTISLFLSQKAKKVYGVEIIKEAIDNAEDNAEENNVNNTEFFVGRSEEV--- 372 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330 + D+ + + VDPPR G + + + A I+Y+SC+P +L R Sbjct: 373 ---------IPDLINKGIKADVVVVDPPRKGCEKTLLEAIAATKPKRIVYVSCDPGTLAR 423 Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364 DL IL+ + + + D FP T H+E VL+ R Sbjct: 424 DLGILNGLGYETKEVQPVDMFPQTSHVETIVLIQR 458 >gi|283851428|ref|ZP_06368709.1| RNA methyltransferase, TrmA family [Desulfovibrio sp. FW1012B] gi|283573166|gb|EFC21145.1| RNA methyltransferase, TrmA family [Desulfovibrio sp. FW1012B] Length = 449 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 60/226 (26%), Positives = 102/226 (45%), Gaps = 19/226 (8%) Query: 142 LHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEW 201 +H+ + I + + L DY++E++ + + + T+ AG+ + Sbjct: 241 VHSVRRAPAAIAQGERQVFALGVDYLEEQVGPSRLHVSADAFAQTNTEAAAGLYALVAAA 300 Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261 +A G+ DL YCG G +L LA HF V +E K +V A + + ++NV Sbjct: 301 AGSAPDGVAWDL---YCGCGGITLALAPHFGTVFGLESDKRAVADA---VKSAELSNVAN 354 Query: 262 VRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL-DDATVGMVQAYPH-IL 319 + + A+ D+ + + +DPPRSG + ++ A P I+ Sbjct: 355 CIFKAGDAATALS-----------DLAATHPAVVVLDPPRSGAAPEVLSALLDAAPKKIV 403 Query: 320 YISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 Y+SCNP +L RDL IL + + R+ D FP T H+E L R+ Sbjct: 404 YVSCNPGTLARDLKILGDLYAVTRVTPVDMFPQTAHIEAVAELERR 449 >gi|262164471|ref|ZP_06032209.1| RNA methyltransferase TrmA family [Vibrio mimicus VM223] gi|262026851|gb|EEY45518.1| RNA methyltransferase TrmA family [Vibrio mimicus VM223] Length = 375 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 53/184 (28%), Positives = 86/184 (46%), Gaps = 19/184 (10%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 SF Q N + + A + I + +L+CG G F+L A V +EI + Sbjct: 208 KSFFQTNPKVAEQLYATARAWVREISPTQMWDLFCGVGGFALHCAAPDTSVTGIEIEPEA 267 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 + +A+ + ++N+ + S +F+Q+ E + V+PPR G Sbjct: 268 IASAQRSAQMMGIDNLSFAALDSAKFSQSQMSAPEL---------------VLVNPPRRG 312 Query: 304 LDDATVGMVQAYP--HILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVL 361 L ++A HILY SCNP ++ +D++ L++ I R+ FD FP+T H E L Sbjct: 313 LGSELTAQLEALAPKHILYSSCNPQTMVKDIAELASYQMI-RVQWFDMFPHTDHAEVLTL 371 Query: 362 LVRK 365 LVRK Sbjct: 372 LVRK 375 >gi|229522457|ref|ZP_04411873.1| RNA methyltransferase TrmA family [Vibrio cholerae TM 11079-80] gi|229340442|gb|EEO05448.1| RNA methyltransferase TrmA family [Vibrio cholerae TM 11079-80] Length = 375 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 53/184 (28%), Positives = 86/184 (46%), Gaps = 19/184 (10%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 SF Q N + + A + I + +L+CG G F+L A V +EI + Sbjct: 208 KSFFQTNPKVAEQLYATARAWVREIAPTQMWDLFCGVGGFALHCAAPDTAVTGIEIEPEA 267 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 + +A+ + ++N+ + S +F+Q+ E + V+PPR G Sbjct: 268 IASAQRSAQMMGIDNLSFAALDSAKFSQSQMSAPEL---------------VLVNPPRRG 312 Query: 304 LDDATVGMVQAYP--HILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVL 361 L ++A HILY SCNP ++ +D++ L++ I R+ FD FP+T H E L Sbjct: 313 LGSELTAQLEALAPKHILYSSCNPQTMAKDIAELASYQMI-RVQWFDMFPHTNHAEVLTL 371 Query: 362 LVRK 365 LVRK Sbjct: 372 LVRK 375 >gi|157961009|ref|YP_001501043.1| 23S rRNA 5-methyluridine methyltransferase [Shewanella pealeana ATCC 700345] gi|226725390|sp|A8H1S1|RUMA_SHEPA RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|157846009|gb|ABV86508.1| RNA methyltransferase, TrmA family [Shewanella pealeana ATCC 700345] Length = 445 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 91/341 (26%), Positives = 144/341 (42%), Gaps = 54/341 (15%) Query: 42 HYRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIR--LEPL 99 HYR RA W FD+ TK I S + + I+ A + L L Sbjct: 135 HYRRRARLATW----------FDKNTK---HISLGFRASSSSDVVEIQSCAVLAEPLSAL 181 Query: 100 LRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTK 159 + F ++ L+ + V L D +R+ L + K + +L+ ANK + Sbjct: 182 IPDLAFMLNQLSGKKALGHVELTQA----DNGNFVVLRVTKVL-SDKDKARLVEFANKHE 236 Query: 160 ICL---DRDYVDERLTVAGRTLIY----RQIE-----NSFTQPNAGINVHML----EWVL 203 + + D D E L AG Y I+ +F Q N +N M+ EW L Sbjct: 237 VIVLLQDDDAQCEHLNGAGEQPFYALSGSDIKLNFSPGNFIQVNGPVNQAMVSQAVEW-L 295 Query: 204 AATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVR 263 + G + +L+L+CG GNFSL LA+ V+ VE VE AR N + ++ V Sbjct: 296 SPKAGER--VLDLFCGIGNFSLPLAKDGAEVIGVEGVVAMVEQARVNAKQSGLDKVAFYH 353 Query: 264 MSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHIL-YIS 322 + + + +E ++ + +DP R+G ++ + + P L Y+S Sbjct: 354 A---DLSADLSKEPWLGKV----------DKMLIDPARAGAYESMQSLKKLKPKALVYVS 400 Query: 323 CNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVLL 362 CNP SL RD IL + ++++ L D FP T H+E L Sbjct: 401 CNPASLARDSEVILKQGYQLKKIGLIDMFPQTHHLESMALF 441 >gi|315645285|ref|ZP_07898410.1| RNA methyltransferase, TrmA family protein [Paenibacillus vortex V453] gi|315279327|gb|EFU42633.1| RNA methyltransferase, TrmA family protein [Paenibacillus vortex V453] Length = 502 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 53/156 (33%), Positives = 83/156 (53%), Gaps = 17/156 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G SL LA+H +V VEI K ++E AR N N + +V+ +S++ Sbjct: 359 VIDAYCGIGTISLFLAQHAKKVYGVEIVKEAIEDARANAELNGMKHVEFEVGASEDV--- 415 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330 R K+ I + I VDPPR G D + +++ P ++Y+SCNP +L R Sbjct: 416 ------IPRWKEQGIEA---DVIVVDPPRKGCDPRLLETILEMKPERVVYVSCNPSTLAR 466 Query: 331 DLSILSTT--HTIERLALFDQFPYTRHMECGVLLVR 364 DL +L T+E + D FP+T H+E +L+R Sbjct: 467 DLRVLKDGGYRTVE-VTPVDMFPHTVHVESVAVLMR 501 >gi|229528169|ref|ZP_04417560.1| RNA methyltransferase TrmA family [Vibrio cholerae 12129(1)] gi|229334531|gb|EEO00017.1| RNA methyltransferase TrmA family [Vibrio cholerae 12129(1)] gi|327485907|gb|AEA80313.1| RNA methyltransferase, TrmA family [Vibrio cholerae LMA3894-4] Length = 375 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 53/184 (28%), Positives = 86/184 (46%), Gaps = 19/184 (10%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 SF Q N + + A + I + +L+CG G F+L A V +EI + Sbjct: 208 KSFFQTNPKVAEQLYATARAWVREIAPTQMWDLFCGVGGFALHCAAPDTAVTGIEIEPEA 267 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 + +A+ + ++N+ + S +F+Q+ E + V+PPR G Sbjct: 268 IASAKRSAQMMGIDNLSFAALDSAKFSQSQMSAPEL---------------VLVNPPRRG 312 Query: 304 LDDATVGMVQAYP--HILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVL 361 L ++A HILY SCNP ++ +D++ L++ I R+ FD FP+T H E L Sbjct: 313 LGSELTAQLEALAPKHILYSSCNPQTMVKDIAELASYQMI-RVQWFDMFPHTDHAEVLTL 371 Query: 362 LVRK 365 LVRK Sbjct: 372 LVRK 375 >gi|327438590|dbj|BAK14955.1| SAM-dependent methyltransferase [Solibacillus silvestris StLB046] Length = 454 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 48/148 (32%), Positives = 75/148 (50%), Gaps = 15/148 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G+ SL LA+ V+ VEI + ++E A+ N A N N ++E Sbjct: 311 VIDAYCGIGSISLFLAQKAGHVMGVEIVEQAIEDAKRNAALNGFTNTYFEAGPAEEVI-- 368 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCR 330 R + K+ D+ + VDPPR G D+A + + Q ++Y+SCNP +L R Sbjct: 369 ---PRWYKEGKEADV-------LVVDPPRKGCDEALLSTIIEQKPKRVVYVSCNPATLAR 418 Query: 331 DLSILS-TTHTIERLALFDQFPYTRHME 357 DL IL + + + D FP+T H E Sbjct: 419 DLRILEDGGYKTQEVQPVDMFPHTTHCE 446 >gi|153828064|ref|ZP_01980731.1| putative TrmA family RNA methyltransferase [Vibrio cholerae 623-39] gi|148876473|gb|EDL74608.1| putative TrmA family RNA methyltransferase [Vibrio cholerae 623-39] Length = 375 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 53/184 (28%), Positives = 86/184 (46%), Gaps = 19/184 (10%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 SF Q N + + A + I + +L+CG G F+L A V +EI + Sbjct: 208 KSFFQTNPKVAEQLYATARAWVREIAPTQMWDLFCGVGGFALHCAAPNTAVTGIEIEPEA 267 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 + +A+ + ++N+ + S +F+Q+ E + V+PPR G Sbjct: 268 IASAQRSAQMMGIDNLSFAALDSAKFSQSQMSAPEL---------------VLVNPPRRG 312 Query: 304 LDDATVGMVQAYP--HILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVL 361 L ++A HILY SCNP ++ +D++ L++ I R+ FD FP+T H E L Sbjct: 313 LGSELTAQLEALAPKHILYSSCNPQTMAKDIAELASYQMI-RVQWFDMFPHTDHAEVLTL 371 Query: 362 LVRK 365 LVRK Sbjct: 372 LVRK 375 >gi|218710562|ref|YP_002418183.1| 23S rRNA 5-methyluridine methyltransferase [Vibrio splendidus LGP32] gi|254766924|sp|B7VK72|RUMA_VIBSL RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|218323581|emb|CAV19816.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Vibrio splendidus LGP32] Length = 442 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 62/199 (31%), Positives = 96/199 (48%), Gaps = 29/199 (14%) Query: 175 GRTLIYRQIENSFTQPNAGINVHM----LEWVLAATKGIQGD--LLELYCGNGNFSLVLA 228 G TL + N F Q N +N M +EW+ Q D +L+L+CG GNFSL +A Sbjct: 263 GVTLPFE--PNHFIQVNQKVNQQMVAQAIEWLEP-----QADERVLDLFCGLGNFSLPIA 315 Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288 + V+ VE V+ A N A N ++N EF QA E ++L + Sbjct: 316 QQSAFVVGVEGVDEMVQQATANAALNQLSNT--------EFYQANLEEDLSSQLWAKE-- 365 Query: 289 SYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDL-SILSTTHTIERLA 345 +F + +DP R+G V + A ++Y+SCNP +L RD S+ + + +L Sbjct: 366 --KFDKVLLDPARAGA-SGIVDQISALGAKRVVYVSCNPATLARDSESLEKQGYQLAKLG 422 Query: 346 LFDQFPYTRHMECGVLLVR 364 + D FP+T H+E L ++ Sbjct: 423 MLDMFPHTSHLESMALFIK 441 >gi|160878319|ref|YP_001557287.1| RNA methyltransferase [Clostridium phytofermentans ISDg] gi|160426985|gb|ABX40548.1| RNA methyltransferase, TrmA family [Clostridium phytofermentans ISDg] Length = 468 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 65/227 (28%), Positives = 106/227 (46%), Gaps = 28/227 (12%) Query: 158 TKICLDRD-------YVDERLTVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWV 202 T ICL+++ +E + + G T I I + SF Q N + E Sbjct: 248 TSICLNKNTKKTNVILGEEIIPLYGPTYITDYIGDIKYQISPLSFYQVNPVQTKKLYELA 307 Query: 203 LAATKGIQGDLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261 L T +L+ +LYCG G SL LA+ V VEI ++E A+ N N +NN + Sbjct: 308 LDYTDLTGNELVWDLYCGIGTISLFLAQKAKMVYGVEIIPQAIEDAKSNAKLNDINNAEF 367 Query: 262 VRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHIL 319 +++E + D+ I VDPPR G D++ + + A I+ Sbjct: 368 FVGAAEEVLPKQYQLSGGKIYADV---------IVVDPPRKGCDESLLETIVAMEPKRIV 418 Query: 320 YISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 Y+SC+P +L RDL ++ + ++++ DQFP++ H+E LL R+ Sbjct: 419 YVSCDPATLARDLKYLIEHGYDLKKVRPVDQFPHSVHVESVTLLTRR 465 >gi|300764680|ref|ZP_07074671.1| SAM-dependent methyltransferase [Listeria monocytogenes FSL N1-017] gi|300514566|gb|EFK41622.1| SAM-dependent methyltransferase [Listeria monocytogenes FSL N1-017] Length = 459 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 48/155 (30%), Positives = 74/155 (47%), Gaps = 16/155 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L++ YCG G A V ++I S+E A+ N N + NV + + Sbjct: 315 LVDAYCGVGTIGQAFAGKVKEVRGMDIIPESIEDAKRNAEKNGIENV---------YYEV 365 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM---VQAYPHILYISCNPDSLC 329 + E + + +R + VDPPRSG D + V+A ++Y+SCNP +L Sbjct: 366 GKAEDVLPKWVN---EGFRPDAVIVDPPRSGCDQGLIKSLLDVEAK-QLVYVSCNPSTLA 421 Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 RDL++L+ + I + D FP T H+EC LL R Sbjct: 422 RDLALLAKKYRIRYMQPVDMFPQTAHIECVGLLTR 456 >gi|323484127|ref|ZP_08089497.1| hypothetical protein HMPREF9474_01248 [Clostridium symbiosum WAL-14163] gi|323402569|gb|EGA94897.1| hypothetical protein HMPREF9474_01248 [Clostridium symbiosum WAL-14163] Length = 575 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 100/387 (25%), Positives = 155/387 (40%), Gaps = 56/387 (14%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHD--GDDLYHIMFDQQT 67 Y+QQLAEK R+ +++ I EP+HYR + HD G+ L + Sbjct: 215 YKQQLAEKQKRMEELLKGICPVKPIIGMKEPLHYRNKVHAVFGHDRKGNPLSGVY----- 269 Query: 68 KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRA-KLFQIDYLTS-------------Q 113 KE I + L+ + E++ TIR +L++ K+ D T Sbjct: 270 KEGTHILVPVEKCLIEDEKADEIIGTIR--GMLKSFKIRTFDEDTGYGFLRHVLVRRGFA 327 Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGR-------ANKTKICLDRDY 166 + + +V L+ + + LR+ IQ I +K + R Y Sbjct: 328 TGEIMVVLVTASPVFPSKNNFVKALREKHPEITTIIQNINNRSTSMVLGDKEHVLYGRGY 387 Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFS 224 +++ L L +R SF Q N+ +L G+ G L+ YCG G Sbjct: 388 IEDVLC----GLRFRISSKSFYQVNS-AQTELLYNKALQLAGLTGKEKALDAYCGIGTIG 442 Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284 L+ +R V+ VE+ +V A N N V N++ + F M + E Sbjct: 443 LIASRKAGEVIGVELNPDAVRDAVQNAKMNDVKNIQFYCNDAGRFIVNMAEKGE-----K 497 Query: 285 IDIHSYRFKTIFVDPPRSGLD----DATVGMVQAYPHILYISCNPDSLCRDLS-ILSTTH 339 +D+ I +DPPRSG DA M ++Y+SC P++L RDL + + Sbjct: 498 VDV-------ILMDPPRSGSTKEFIDAVAKM--GPERVVYVSCGPETLVRDLRWFMGNGY 548 Query: 340 TIERLALFDQFPYTRHMECGVLLVRKP 366 D F T H+E VLLVRKP Sbjct: 549 RAVEAWPVDMFGGTGHVETAVLLVRKP 575 >gi|254284557|ref|ZP_04959524.1| TrmA family RNA methyltransferase, putative [Vibrio cholerae AM-19226] gi|150425342|gb|EDN17118.1| TrmA family RNA methyltransferase, putative [Vibrio cholerae AM-19226] Length = 375 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 47/155 (30%), Positives = 77/155 (49%), Gaps = 18/155 (11%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + +L+CG G F+L A V +EI ++ +A+ + ++N+ + S +F+Q+ Sbjct: 237 MWDLFCGVGGFALHCAAPDTAVTGIEIEPEAIASAQRSAQMMGIDNLSFAALDSAKFSQS 296 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCR 330 E + V+PPR GL ++A HILY SCNP ++ + Sbjct: 297 QMSAPEL---------------VLVNPPRRGLGSELTAQLEALAPKHILYSSCNPQTMAK 341 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 D++ L++ I R+ FD FP+T H E LLVRK Sbjct: 342 DIAELASYQMI-RVQWFDMFPHTNHAEVLTLLVRK 375 >gi|33355823|gb|AAQ16244.1| RNA methyl transferase-like [Enterococcus faecalis] Length = 571 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 50/160 (31%), Positives = 83/160 (51%), Gaps = 16/160 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G L LA+ +V +E+ + +V+ A NN K+ + + FT Sbjct: 323 VVDAYCGIGTIGLTLAQDAKQVYGIEVIEEAVKDAE--------NNAKLNNIENATFTAG 374 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330 + E L + + + + VDPPR GLD V +++ P I+Y+SCNP +L R Sbjct: 375 LAEEL----LPKLVENGLQPDVVVVDPPRKGLDGQLVNTLIETQPERIVYVSCNPATLAR 430 Query: 331 DLSILSTT-HTIERLALFDQFPYTRHMECGVLLV-RKPSG 368 D+++L+ + + + D FP T H+E VLL +KP G Sbjct: 431 DIALLTEGGYEAKEIQPVDNFPQTTHIETVVLLSHKKPDG 470 >gi|297748873|gb|ADI51419.1| tRNA (Uracil-5-) -methyltransferase [Chlamydia trachomatis D-EC] gi|297749753|gb|ADI52431.1| tRNA (Uracil-5-) -methyltransferase [Chlamydia trachomatis D-LC] Length = 430 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 70/255 (27%), Positives = 118/255 (46%), Gaps = 43/255 (16%) Query: 124 HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQI 183 LLD +I + L AR +T ++ ++L++ GR+ ++ Sbjct: 203 QSLLDSGLPITSIFWEEKLSARNSPTTF-----RTTHLYGAPFLKQQLSIDGRSSLFHIR 257 Query: 184 ENSFTQPNAGINVHMLEWVLAATKGIQG-----------DLLELYCGNGNFSLVLARHFD 232 SF QP + L A K IQ LL+LYCG G ++LA + Sbjct: 258 PRSFFQPQS----------LQAEKIIQTIKEFIDPCGEETLLDLYCGAGIIGILLAPYVK 307 Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292 +++ VE+ +V +A+ NI N V ++++ +K+F + R E L DI Sbjct: 308 KIIGVELVPDAVASAQENIQLNSV-DMEVFLEDAKQFCK--RNE----NLPSPDI----- 355 Query: 293 KTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQ 349 + +DPPR G+ + + + A I+Y+SCNP + ++ S+L + + R+ DQ Sbjct: 356 --VVIDPPRCGMQNRALKYLLRMAPKKIVYVSCNPLTQIQECSVLVEQGYQLRRMQPIDQ 413 Query: 350 FPYTRHMECGVLLVR 364 FP+T H+E VLL R Sbjct: 414 FPHTNHLENIVLLER 428 >gi|312888540|ref|ZP_07748110.1| 23S rRNA m(5)U-1939 methyltransferase [Mucilaginibacter paludis DSM 18603] gi|311298987|gb|EFQ76086.1| 23S rRNA m(5)U-1939 methyltransferase [Mucilaginibacter paludis DSM 18603] Length = 475 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 59/205 (28%), Positives = 91/205 (44%), Gaps = 16/205 (7%) Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL--ELYCGNGN 222 +Y+ E + G+ + +R SF Q N+ I L + G +G L +LY G G Sbjct: 281 EYIHEEMPSGGKMIRFRIGAKSFYQTNS-IQALRLYEITRDFAGFKGHELVYDLYTGAGT 339 Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282 + +A H V+ VE ++E A+ N N + N K K+ A Sbjct: 340 IANFIAAHVKEVVGVEYVPQAIEDAKINSGINGITNTKFFAGDMKDVLVA---------- 389 Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVG--MVQAYPHILYISCNPDSLCRDLSILSTTHT 340 D + I DPPR+G+ V M I+Y+SCN + RDL +L + Sbjct: 390 -DFVAEHGKPDVIITDPPRAGMHPDVVNRLMEIEAEKIVYVSCNAATQARDLLVLKEKYD 448 Query: 341 IERLALFDQFPYTRHMECGVLLVRK 365 + ++ D FP+T+H+E VLLV K Sbjct: 449 VMKIQPVDMFPHTQHVENVVLLVLK 473 >gi|108758357|ref|YP_631969.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Myxococcus xanthus DK 1622] gi|108462237|gb|ABF87422.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Myxococcus xanthus DK 1622] Length = 431 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 89/337 (26%), Positives = 149/337 (44%), Gaps = 45/337 (13%) Query: 43 YRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLR- 101 YR RA H G Y F +++ ER+ ++ + ++ AL +L PLL+ Sbjct: 128 YRRRAVLHPAGKGALGY---FGRRSHERVPVEVCGALTPVLTAL------PGKLAPLLKP 178 Query: 102 -AKLFQIDYLTSQSDQAIVTL-----IYHRLLDDAWREC-AIRLRDA-LHARKYQIQLIG 153 AK + L ++ D+A + + R L+ A A+RL A L ++ +L+G Sbjct: 179 LAKDAEEVLLLAEGDKAAFAVNLSGPVTARHLEAAEAAVRALRLEGAVLTPKEGSARLLG 238 Query: 154 RANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD- 212 + R Y R V L R ++F Q +A NV ++ + + D Sbjct: 239 KPAL------RSYSPLRPEV---PLYLRP--DAFAQAHAEANVGLVTSAVYELGARESDT 287 Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +LELY GNGNF+ LA VL VE + VE A+ + V NV+ ++ +++ Sbjct: 288 VLELYSGNGNFTFPLAGTAASVLGVESSPVGVELAQRSAHEGGVTNVRFIQGDARKVCDG 347 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRD 331 + E+ RF DPPR+G M ++Y++C+P SL RD Sbjct: 348 LVAEQR------------RFDVCLADPPRAGAPGLAKWMTALGVRRVVYVACDPASLARD 395 Query: 332 LS-ILSTTHTIERLALFDQFPYTRHMECGVLLVRKPS 367 + +++ + L + D FP T H+E V+ +P+ Sbjct: 396 AAGLVAAGYKPLALQVVDMFPQTHHVEA-VMSFERPA 431 >gi|238925258|ref|YP_002938775.1| hypothetical RNA methyltransferase-like protein [Eubacterium rectale ATCC 33656] gi|238876934|gb|ACR76641.1| hypothetical RNA methyltransferase-like protein [Eubacterium rectale ATCC 33656] Length = 493 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 99/407 (24%), Positives = 174/407 (42%), Gaps = 55/407 (13%) Query: 10 YEQQLAEKVDRLRQMML---AFQVPNLQ------IFRSEPIHYRMRAEFHIWHDGD-DLY 59 YE+QL K +++R ++ F L + P YR +A+F + +D D ++ Sbjct: 87 YEKQLEFKNNKVRNNLMRIGGFSEAKLDSKMQPPVGTDNPYRYRNKAQFPVGYDRDGNIV 146 Query: 60 HIMFDQQTKERMRID---YFMPGSLLINALMIEMMATIRLEP--------LLRAKLFQID 108 + ++ + ++ +P + I ++ E M + P L+R L + Sbjct: 147 TGFYASRSHNIIPVEDCRLGVPQNKEILDIIKEWMNECGITPYDENTHKGLVRHVLIRYG 206 Query: 109 YLTSQSDQAIV----TLIYHRLLDDAWRECAIRLR--DALHARKYQIQ------LIGRAN 156 + + Q +V +L R +A RL D + + Y I ++G+ Sbjct: 207 FTSKQIMVCLVINGDSLEAKRRAGNAADILCERLSKIDGMTSISYNINKENTNVILGK-- 264 Query: 157 KTKICLDRDYVDERL--------TVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKG 208 KT R Y+++ + T G + Y+ SF Q N + LA G Sbjct: 265 KTVCIWGRPYIEDTIHLLSYPDFTPQGTGITYQISPQSFYQVNPKQTEKLYSTALAFA-G 323 Query: 209 IQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266 + G+ + +LYCG G SL L++ +V VEI ++E A+ N N + N + + Sbjct: 324 LTGNENVWDLYCGIGTISLFLSQKAKQVYGVEIVPQAIEDAKNNAKLNGITNAQFFVGKA 383 Query: 267 K----EFTQAMRREREFNRLKDIDIHS--YRFKTIFVDPPRSGLDDATVG-MVQAYPH-I 318 + +F + +++ H+ R I VDPPR G D+ + M+ P I Sbjct: 384 EDVLPQFYENAKKKENITDDTASTGHTDMLRPDVIVVDPPRKGCDEKCLDTMLAMSPERI 443 Query: 319 LYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364 +Y+SC+ +L RDL IL + + + FDQF +T H+E LL R Sbjct: 444 VYVSCDSATLARDLKILCEEKYELMKWQAFDQFSHTTHVESICLLER 490 >gi|229154191|ref|ZP_04282314.1| Uncharacterized RNA methyltransferase [Bacillus cereus ATCC 4342] gi|228629281|gb|EEK85985.1| Uncharacterized RNA methyltransferase [Bacillus cereus ATCC 4342] Length = 459 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 85/381 (22%), Positives = 165/381 (43%), Gaps = 42/381 (11%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQ------IFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63 Y++QL +K D + Q + +L+ + P HYR +++ + + + ++ Sbjct: 96 YKEQLNQKRDIVVQAFEKYMKNSLEEKIRPTLGMENPWHYRNKSQLQVGRKDEKVITGLY 155 Query: 64 DQQTKERMRIDYFM-------PGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTS-QSD 115 Q + + + I + M + ++ ++ ++ +I E + + I T+ Q+ Sbjct: 156 KQNSHQLIDIAHCMIQHKATNEATKVVRRILEKLNVSIYNEKKQKGLVRTIVTRTAVQTG 215 Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175 + VTLI + + ++ + A K +Q + + I + D+ +AG Sbjct: 216 EVQVTLITTKEELPNKEQFIAEVQKQMPAVKSIMQNVNWRKTSVI-----FGDKTFKLAG 270 Query: 176 RTLIYRQIEN--------SFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGNGNFSLV 226 + +I + + +F Q N V + E AA +++ YCG G L Sbjct: 271 KEVIQETLGDLSFELSARAFFQLNPEQTVVLYNEAKKAAALTGNEKIVDAYCGVGTIGLW 330 Query: 227 LARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDID 286 LA V +++ ++ AR N + N K ++++ +E Sbjct: 331 LANDAAEVRGMDVIPEAIADARKNAKRHGFTNTKYEAGKAEQWLPKWVKE---------- 380 Query: 287 IHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCRDLSILSTTHTIERL 344 +R I VDPPR+G DD + +++ P ++Y+SCNP SL RD+ L ++ +E + Sbjct: 381 --GWRPDVIVVDPPRTGCDDKLLETILKVKPKQVVYVSCNPSSLARDVQALMKSYEVEYI 438 Query: 345 ALFDQFPYTRHMECGVLLVRK 365 D FP+T H+E V LVRK Sbjct: 439 QPVDMFPHTAHVENVVKLVRK 459 >gi|331001672|ref|ZP_08325195.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lachnospiraceae oral taxon 107 str. F0167] gi|330413393|gb|EGG92760.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lachnospiraceae oral taxon 107 str. F0167] Length = 394 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 51/164 (31%), Positives = 84/164 (51%), Gaps = 19/164 (11%) Query: 208 GIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265 G++GD LL+ Y G G L+ ++ V++VE+ K + + A N N++ NVK Sbjct: 242 GLEGDEVLLDAYSGIGTIGLIASKSVKEVISVELNKDAHKDAITNAKINNIKNVKFYNAD 301 Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD---ATVGMVQAYPHILYIS 322 + F + D+ + + +DPPR+G + A VG ++ ++Y+S Sbjct: 302 ATAF------------INDLAAAGEKIDVVILDPPRTGSTEEFIAAVGRLKP-KKVVYVS 348 Query: 323 CNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 CNP++L RDL S + E+ +FD F +TRH E VL+ RK Sbjct: 349 CNPETLARDLESFKRQRYGFEKGMVFDCFCHTRHAEVVVLMSRK 392 >gi|78189981|ref|YP_380319.1| 23S rRNA methyltransferase/RumA [Chlorobium chlorochromatii CaD3] gi|78172180|gb|ABB29276.1| 23S rRNA m(5)U-1939 methyltransferase [Chlorobium chlorochromatii CaD3] Length = 477 Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 69/256 (26%), Positives = 116/256 (45%), Gaps = 24/256 (9%) Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY 166 ++ +TS D A V Y +L A E + + + + +RK + + + + Sbjct: 233 VNLVTSWHD-AEVMARYSAMLHHAMPEQKMTVVNNITSRK---NGVATGEEEVVISGEGF 288 Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ--GDLLELYCGNGNFS 224 + ERL L +R NSF Q N+ +L L A +Q + +LYCG G + Sbjct: 289 ITERLC----GLDFRISANSFFQTNSA-QAEVLYQTLLAVADLQPTDTVYDLYCGTGTIT 343 Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284 L +A H +V+ +E+ + ++ A+ N N + N + K+F + E + Sbjct: 344 LCMAAHCHQVIGLEVVESAIRDAQNNALRNGITNAHFLLADLKDFHTLLPLLEEHGKP-- 401 Query: 285 IDIHSYRFKTIFVDPPRSGL-DDATVGMVQAYPH-ILYISCNPDSLCRDLSILST-THTI 341 + I DPPR+G+ A MVQ P I+Y+SCNP SL RD L+ +++ Sbjct: 402 --------RVIVTDPPRAGMHPKALATMVQLQPERIIYVSCNPASLARDGKELAAQGYSL 453 Query: 342 ERLALFDQFPYTRHME 357 + + FP T H+E Sbjct: 454 RSVQPVEMFPQTNHIE 469 >gi|331090275|ref|ZP_08339162.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lachnospiraceae bacterium 3_1_46FAA] gi|330401894|gb|EGG81469.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lachnospiraceae bacterium 3_1_46FAA] Length = 459 Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 66/228 (28%), Positives = 106/228 (46%), Gaps = 23/228 (10%) Query: 142 LHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEW 201 LH + + ++++T++ +D+ E+L L ++ SF QPN + E Sbjct: 249 LHILNDSLSDVVKSDETRVLYGQDFFYEKLL----GLQFKITPFSFFQPNTKGAEVLYET 304 Query: 202 VLAATKGIQG-DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK 260 V I+ + +L+ G G S VLA +V+ VEI + +VEAA+ N N ++N + Sbjct: 305 VREYIGDIRDLTVFDLFSGTGTISQVLAPVAKKVIGVEIVEEAVEAAKENAERNGLSNCE 364 Query: 261 IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HI 318 + F L DI + I +DPPR G+ + + Y I Sbjct: 365 FIAGDV------------FEVLDDI---KEKPDVIILDPPRDGIHPKALPKILDYGVDRI 409 Query: 319 LYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVRK 365 +YISC SL RDL ++ +T+E++ DQF T H+E LL RK Sbjct: 410 VYISCKMTSLARDLELIQQRGYTVEKMTAVDQFCETVHVETVALLTRK 457 >gi|304385359|ref|ZP_07367704.1| 23S rRNA (uracil-5-)-methyltransferase [Pediococcus acidilactici DSM 20284] gi|304328566|gb|EFL95787.1| 23S rRNA (uracil-5-)-methyltransferase [Pediococcus acidilactici DSM 20284] Length = 455 Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 62/213 (29%), Positives = 104/213 (48%), Gaps = 32/213 (15%) Query: 168 DERLTVAGRTLIYRQI--------ENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELY 217 ++RL +AG ++I+ ++ +SF Q N + L + G+ G +L++Y Sbjct: 258 EDRL-LAGESVIHDELLGQKFIISAHSFYQVNP-VQTEKLYQLAIEKAGLTGKETVLDVY 315 Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277 G G SL +A+ +V VEI K +V+ A+ N N NVK V +++ + E Sbjct: 316 SGIGTISLAMAQAAKKVYGVEIVKEAVQDAKVNAVQNQAKNVKFVVGKAEDQMAKWQAE- 374 Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDD----ATVGMVQAYPHILYISCNPDSLCRDLS 333 + + VDPPR GLD+ ATV M A ++Y+SCNP +L RD+ Sbjct: 375 -----------GMQPDVVVVDPPRKGLDESVINATVAM--APKRVVYVSCNPATLVRDID 421 Query: 334 -ILSTTHTIER-LALFDQFPYTRHMECGVLLVR 364 + + +++ + DQFP T H+E ++ R Sbjct: 422 RFQAQGYKVDQPITPVDQFPQTPHVESVTVMSR 454 >gi|293396875|ref|ZP_06641149.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Serratia odorifera DSM 4582] gi|291420346|gb|EFE93601.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Serratia odorifera DSM 4582] Length = 375 Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 54/155 (34%), Positives = 77/155 (49%), Gaps = 18/155 (11%) Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271 + +L+CG G F L AR R+ +EI ++ AR + AA + V + S F Sbjct: 236 SMWDLFCGVGGFGLHCARAQTRLTGIEINAEAIACARQSAAALGLRQVNFQALDSTHFAT 295 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLC 329 A E E +L + V+PPR G+ A + A +ILY SCN S+ Sbjct: 296 A---EGEVPQL------------VLVNPPRRGIGQALCDYLHRMAPDYILYSSCNAQSMA 340 Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 +DL++L + IER+ LFD FP+T H E LLVR Sbjct: 341 KDLAMLP-DYRIERVQLFDMFPHTAHYEVLTLLVR 374 >gi|187778559|ref|ZP_02995032.1| hypothetical protein CLOSPO_02154 [Clostridium sporogenes ATCC 15579] gi|187772184|gb|EDU35986.1| hypothetical protein CLOSPO_02154 [Clostridium sporogenes ATCC 15579] Length = 451 Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 57/237 (24%), Positives = 109/237 (45%), Gaps = 31/237 (13%) Query: 137 RLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINV 196 ++ LH + + + +K +I RDY+ E L L ++ +F Q N+ Sbjct: 238 EIKGILHTINDTLSDVVQVDKLEILYGRDYIIEELL----GLKFKIAPEAFFQTNS---- 289 Query: 197 HMLEWVLAATKGIQGD-----LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251 E + + K GD + +LYCG G ++A +V+ VE+ + +V+AA N Sbjct: 290 KGAEKLYSIVKDFLGDASSKVVFDLYCGTGTIGQIVAPKAKKVIGVELIEEAVKAANENA 349 Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311 N ++N + + + + ++++ + I +DPPR G+ + Sbjct: 350 KLNGLDNCEFIAGDVAKVIKDLKQKPDI---------------IILDPPRPGVHPVALEY 394 Query: 312 VQAY--PHILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 V + I+Y+SCNP +L DL ++ + +E++ D FP+T H+E V + +K Sbjct: 395 VVKFEPKEIIYVSCNPKTLVDDLEYLIDNGYKLEKVKGMDMFPHTPHVETVVRIAKK 451 >gi|319744421|gb|EFV96779.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus agalactiae ATCC 13813] Length = 452 Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 98/387 (25%), Positives = 165/387 (42%), Gaps = 54/387 (13%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHDGDDLYHI 61 QY++QL K D +RQ ++ F+ + I SEP HYR + +F + G ++ Sbjct: 88 QYDKQLEFKTDIIRQALMKFKPEGYENYEIRKTIGMSEPEHYRAKLQFQVRSFGGNVKAG 147 Query: 62 MFDQQTKERMRI-DYFMPGSL---LINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQA 117 ++ Q T + I D + SL +IN + E++ +L K+ + + + QA Sbjct: 148 LYAQGTHRLIDIKDCLVQDSLTQEMINRVA-ELLGKYKLPIYNERKIAGVRTVMIRRAQA 206 Query: 118 I--VTLIY---HRL-LDDAWRECAIRLRDALHARKYQIQLIGRANK------TKICLDRD 165 V LI+ RL DD E +R+ + + + T++ ++ Sbjct: 207 SGEVQLIFITSKRLDFDDVVIEL---VREFPELKTVAVNINASKTSDIYGQITEVIWGQE 263 Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAG-INVHMLEWVLAATKGIQGDLLELYCGNGNFS 224 ++E + G +L R +F Q N + E V A DL++ YCG G Sbjct: 264 SINEEVLDYGFSLSPR----AFYQLNPKQTQILYSEAVKALDVKEDDDLIDAYCGVGTIG 319 Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284 L A V ++I +++ A+ N A H+ FT E + +D Sbjct: 320 LAFAGKVKSVRGMDIIPEAIQDAKEN--ALHMG-----------FTNT---HYEAGKAED 363 Query: 285 ID----IHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILSTT 338 I +R + VDPPR+GLDD + + P ++Y+SCN +L RDL L+ Sbjct: 364 IIPRWYSEGFRANALIVDPPRTGLDDKLLNTILKMPPEKMVYVSCNTSTLARDLVTLTKV 423 Query: 339 HTIERLALFDQFPYTRHMECGVLLVRK 365 + + + D FP+T E V L +K Sbjct: 424 YHVHYIQSVDMFPHTARTEAVVKLQKK 450 >gi|15605475|ref|NP_220261.1| rRNA methyltransferase [Chlamydia trachomatis D/UW-3/CX] gi|76789483|ref|YP_328569.1| rRNA methyltransferase [Chlamydia trachomatis A/HAR-13] gi|237805093|ref|YP_002889247.1| rRNA methyltransferase [Chlamydia trachomatis B/TZ1A828/OT] gi|7404497|sp|P55137|Y742_CHLTR RecName: Full=Uncharacterized RNA methyltransferase CT_742; AltName: Full=Protein HOM1 gi|6578112|gb|AAC68337.2| rRNA Methyltransferse [Chlamydia trachomatis D/UW-3/CX] gi|76168013|gb|AAX51021.1| rRNA methyltransferase [Chlamydia trachomatis A/HAR-13] gi|231273393|emb|CAX10308.1| rRNA methyltransferase [Chlamydia trachomatis B/TZ1A828/OT] gi|296436289|gb|ADH18463.1| rRNA methyltransferase [Chlamydia trachomatis G/9768] gi|296437218|gb|ADH19388.1| rRNA methyltransferase [Chlamydia trachomatis G/11222] gi|296438148|gb|ADH20309.1| rRNA methyltransferase [Chlamydia trachomatis G/11074] gi|297140649|gb|ADH97407.1| rRNA methyltransferase [Chlamydia trachomatis G/9301] Length = 396 Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 70/255 (27%), Positives = 118/255 (46%), Gaps = 43/255 (16%) Query: 124 HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQI 183 LLD +I + L AR +T ++ ++L++ GR+ ++ Sbjct: 169 QSLLDSGLPITSIFWEEKLSARNSPTTF-----RTTHLYGAPFLKQQLSIDGRSSLFHIR 223 Query: 184 ENSFTQPNAGINVHMLEWVLAATKGIQG-----------DLLELYCGNGNFSLVLARHFD 232 SF QP + L A K IQ LL+LYCG G ++LA + Sbjct: 224 PRSFFQPQS----------LQAEKIIQTIKEFIDPCGEETLLDLYCGAGIIGILLAPYVK 273 Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292 +++ VE+ +V +A+ NI N V ++++ +K+F + R E L DI Sbjct: 274 KIIGVELVPDAVASAQENIQLNSV-DMEVFLEDAKQFCK--RNE----NLPSPDI----- 321 Query: 293 KTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQ 349 + +DPPR G+ + + + A I+Y+SCNP + ++ S+L + + R+ DQ Sbjct: 322 --VVIDPPRCGMQNRALKYLLRMAPKKIVYVSCNPLTQIQECSVLVEQGYQLRRMQPIDQ 379 Query: 350 FPYTRHMECGVLLVR 364 FP+T H+E VLL R Sbjct: 380 FPHTNHLENIVLLER 394 >gi|311747752|ref|ZP_07721537.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Algoriphagus sp. PR1] gi|311302702|gb|EFQ79251.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Algoriphagus sp. PR1] Length = 468 Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 62/209 (29%), Positives = 99/209 (47%), Gaps = 24/209 (11%) Query: 169 ERLTVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGD--LLELYC 218 E +T AG I ++E SF Q N+ + L + ++GD + +LY Sbjct: 271 ELVTYAGLPYIEEEMEGLKFRIGPKSFYQTNSE-QAYELYKITRDFAELKGDEIVYDLYT 329 Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278 G G + +A+ +V+ VE + ++ A+ N N + N KE E Sbjct: 330 GTGTIANFVAKKAKQVIGVEYVEAAIADAKINSQINGIENTLFYAGDMKEILN-----DE 384 Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILS 336 F I+ H+ I DPPR+G+D+ V M+ A P I+Y+SCNP + RDL++L Sbjct: 385 F-----IENHAAP-DVIITDPPRAGMDEKVVQMLLKLAAPKIVYVSCNPATQARDLALLG 438 Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVRK 365 + ++++ D FP T H+E VLL K Sbjct: 439 EKYDVQKVQPVDMFPQTYHVENVVLLTLK 467 >gi|296330132|ref|ZP_06872614.1| putative RNA methyltransferase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305673376|ref|YP_003865048.1| putative RNA methyltransferase [Bacillus subtilis subsp. spizizenii str. W23] gi|296152721|gb|EFG93588.1| putative RNA methyltransferase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305411620|gb|ADM36739.1| putative RNA methyltransferase [Bacillus subtilis subsp. spizizenii str. W23] Length = 459 Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 47/153 (30%), Positives = 74/153 (48%), Gaps = 15/153 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G SL LA+ +V VEI ++E A+ N N + N + ++ Sbjct: 315 VIDAYCGIGTISLFLAKQAKKVYGVEIVPEAIEDAKRNAELNGITNAEFAVGEAETVIPK 374 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330 E T+ VDPPR G D+ + +V+ P ++Y+SCNP +L R Sbjct: 375 WYEE------------GITADTLVVDPPRKGCDETLLRTIVEMKPKRVVYVSCNPGTLAR 422 Query: 331 DLSILS-TTHTIERLALFDQFPYTRHMECGVLL 362 DL +L +T + D FP+T H+EC +L Sbjct: 423 DLRVLEDGGYTTLEVQPVDMFPHTNHVECVAVL 455 >gi|262190756|ref|ZP_06048984.1| RNA methyltransferase TrmA family [Vibrio cholerae CT 5369-93] gi|262033371|gb|EEY51881.1| RNA methyltransferase TrmA family [Vibrio cholerae CT 5369-93] Length = 375 Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 53/184 (28%), Positives = 86/184 (46%), Gaps = 19/184 (10%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 SF Q N + + A + I + +L+CG G F+L A V +EI + Sbjct: 208 KSFFQTNPKVAEQLYATARAWVREIAPTQMWDLFCGVGGFALHCAAPDTAVTGIEIEPEA 267 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 + +A+ + ++N+ + S +F+Q+ E + V+PPR G Sbjct: 268 IASAQRSAQMMEIDNLSFAALDSAKFSQSQMSAPEL---------------VLVNPPRRG 312 Query: 304 LDDATVGMVQAYP--HILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVL 361 L ++A HILY SCNP ++ +D++ L++ I R+ FD FP+T H E L Sbjct: 313 LGSELTAQLEALAPKHILYSSCNPQTMVKDIAELASYQMI-RVQWFDMFPHTDHAEVLTL 371 Query: 362 LVRK 365 LVRK Sbjct: 372 LVRK 375 >gi|262403007|ref|ZP_06079567.1| RNA methyltransferase TrmA family [Vibrio sp. RC586] gi|262350506|gb|EEY99639.1| RNA methyltransferase TrmA family [Vibrio sp. RC586] Length = 377 Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 53/184 (28%), Positives = 86/184 (46%), Gaps = 19/184 (10%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 SF Q N + + A + I + +L+CG G F+L A V +EI + Sbjct: 208 KSFFQTNPKVAEQLYATARAWVREIAPTQMWDLFCGVGGFALHCAAPNTAVTGIEIEPEA 267 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 + +A+ + ++N+ + S +F+Q+ E + V+PPR G Sbjct: 268 IASAQRSAQMMGIDNLSFAALDSAKFSQSQMSAPEL---------------VLVNPPRRG 312 Query: 304 LDDATVGMVQAYP--HILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVL 361 L ++A HILY SCNP ++ +D++ L++ I R+ FD FP+T H E L Sbjct: 313 LGSELTAQLEALAPKHILYSSCNPQTMVKDIAELASYQMI-RVQWFDMFPHTDHAEVLTL 371 Query: 362 LVRK 365 LVRK Sbjct: 372 LVRK 375 >gi|229159573|ref|ZP_04287587.1| Uncharacterized RNA methyltransferase [Bacillus cereus R309803] gi|228623875|gb|EEK80687.1| Uncharacterized RNA methyltransferase [Bacillus cereus R309803] Length = 459 Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 84/382 (21%), Positives = 166/382 (43%), Gaps = 44/382 (11%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQ------IFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63 Y++QL +K D + Q + +L+ + P HYR +++ + + + ++ Sbjct: 96 YKEQLNQKRDIVVQAFEKYMNNSLEERIRPTLGMENPWHYRNKSQLQVGRKDEKVITGLY 155 Query: 64 DQQTKERMRIDYFM-------PGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTS-QSD 115 Q + + + I + M + ++ ++ ++ +I E + + I T+ Q+ Sbjct: 156 KQNSHQLIDIAHCMIQHKATNEATKVVRRILEKLNVSIYNEKKQKGLVRTIVTRTAVQTG 215 Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175 + VTLI + + ++ + A K +Q + + I + D+ +AG Sbjct: 216 EVQVTLITTKEELPNKEQFIAEVQKQMPAVKSIMQNVNWRKTSVI-----FGDKTFKLAG 270 Query: 176 RTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSL 225 + +I + + +F Q N V + + A + G+ +++ YCG G L Sbjct: 271 KEVIQETLGDLSFELSARAFFQLNPEQTVVLYDEAKKAA-ALTGNEKIVDAYCGVGTIGL 329 Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285 LA V +++ ++ AR N + N K ++++ +E Sbjct: 330 WLANDAAEVRGMDVIPEAIADARKNAKRHGFTNTKYEAGKAEQWLPKWVKE--------- 380 Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMV-QAYP-HILYISCNPDSLCRDLSILSTTHTIER 343 +R I VDPPR+G DD + + + P ++Y+SCNP SL RD+ L ++ +E Sbjct: 381 ---GWRPDVIVVDPPRTGCDDKLLETILKVKPKQVVYVSCNPSSLARDVQALMKSYEVEY 437 Query: 344 LALFDQFPYTRHMECGVLLVRK 365 + D FP+T H+E V LVRK Sbjct: 438 VQPVDMFPHTAHVENVVKLVRK 459 >gi|254496451|ref|ZP_05109328.1| 23S rRNA 5-methyluridine methyltransferase [Legionella drancourtii LLAP12] gi|254354307|gb|EET12965.1| 23S rRNA 5-methyluridine methyltransferase [Legionella drancourtii LLAP12] Length = 444 Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 64/228 (28%), Positives = 103/228 (45%), Gaps = 18/228 (7%) Query: 136 IRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVA--GRTLIYRQIENSFTQPNAG 193 +R++ +Y I L + C + E LT A + Y FTQ N+ Sbjct: 221 LRIQQFAEQYQYTIFLQPSGPDSVYCFYPPHASEFLTYALPDYQITYSFHPTDFTQVNSE 280 Query: 194 INVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIA 252 +N M+ L D+ L+L+CG GNFSL +A+ +VL VE + VE A N Sbjct: 281 LNRAMVALALQLMDLKSTDIVLDLFCGLGNFSLPMAKFCAKVLGVEGSAMMVERAYMNAK 340 Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312 AN+++NV + + + + ++ + +DPPRSG + + Sbjct: 341 ANNLSNVDFYAANLDDVNEVQKLVQQ------------TCNKVLIDPPRSGALELVKQID 388 Query: 313 QAYPH-ILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTRHME 357 P I+Y+SCNP +L RD IL + + + + D FP+T H+E Sbjct: 389 TLNPERIVYVSCNPVTLARDTDILVNQKGYVLIKAGVMDMFPHTAHVE 436 >gi|237803172|ref|YP_002888366.1| rRNA methyltransferase [Chlamydia trachomatis B/Jali20/OT] gi|231274406|emb|CAX11201.1| rRNA methyltransferase [Chlamydia trachomatis B/Jali20/OT] Length = 396 Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 70/255 (27%), Positives = 118/255 (46%), Gaps = 43/255 (16%) Query: 124 HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQI 183 LLD +I + L AR +T ++ ++L++ GR+ ++ Sbjct: 169 QSLLDSGLPITSIFWEEKLSARNSPTTF-----RTTHLYGAPFLKQQLSIDGRSSLFHIR 223 Query: 184 ENSFTQPNAGINVHMLEWVLAATKGIQG-----------DLLELYCGNGNFSLVLARHFD 232 SF QP + L A K IQ LL+LYCG G ++LA + Sbjct: 224 PRSFFQPQS----------LQAEKIIQTIKEFIDPCGEETLLDLYCGAGIIGILLAPYVK 273 Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292 +++ VE+ +V +A+ NI N V ++++ +K+F + R E L DI Sbjct: 274 KIIGVELVPDAVASAQENIQLNSV-DMEVFLEDAKQFCK--RNE----NLPSPDI----- 321 Query: 293 KTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQ 349 + +DPPR G+ + + + A I+Y+SCNP + ++ S+L + + R+ DQ Sbjct: 322 --VVIDPPRCGMQNRALKYLLRMAPKKIVYVSCNPLTQIQECSVLVEQGYQLRRMQPIDQ 379 Query: 350 FPYTRHMECGVLLVR 364 FP+T H+E VLL R Sbjct: 380 FPHTNHLENIVLLER 394 >gi|154249037|ref|YP_001409862.1| RNA methyltransferase [Fervidobacterium nodosum Rt17-B1] gi|154152973|gb|ABS60205.1| RNA methyltransferase, TrmA family [Fervidobacterium nodosum Rt17-B1] Length = 446 Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 58/186 (31%), Positives = 94/186 (50%), Gaps = 24/186 (12%) Query: 186 SFTQPNAGINVHMLEWVLAATKGIQ----GDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241 +F Q N + V M+++V TK + ++L+LY G G F++ LA V+AVE + Sbjct: 277 AFFQNNYNVAVKMVDFV---TKNLNLTGSENILDLYAGIGTFTMRLAMLSRNVVAVESSH 333 Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301 SV+A + N N++ N++ EF ++ ++ I +DPPR Sbjct: 334 ISVKAGKANANINNLRNIRYEESDVVEFLKS---------------YTGNADIIILDPPR 378 Query: 302 SGLDDATVG-MVQAYPH-ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359 SG +++ PH I YISC+ +L RD+++L + I + FD FP T H+E Sbjct: 379 SGAGKEVCKEILRIKPHKIAYISCDSSTLARDIALLKEDYNIIAVQPFDMFPQTYHVETV 438 Query: 360 VLLVRK 365 VL+ RK Sbjct: 439 VLMERK 444 >gi|229119979|ref|ZP_04249234.1| Uncharacterized RNA methyltransferase [Bacillus cereus 95/8201] gi|228663445|gb|EEL19030.1| Uncharacterized RNA methyltransferase [Bacillus cereus 95/8201] Length = 458 Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 47/149 (31%), Positives = 78/149 (52%), Gaps = 15/149 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G+ SL LA+ +V VEI ++E A+ N A N++ N + ++ Sbjct: 315 VIDAYCGIGSISLFLAKKAKKVYGVEIVPEAIEDAKRNAALNNMTNAEFGVGEAEVVIPK 374 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330 +E + D T+ VDPPR G D+A + ++ P ++Y+SCNP +L R Sbjct: 375 WYKE---GVIAD---------TMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLAR 422 Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMEC 358 DL +L + + + D FP+T H+EC Sbjct: 423 DLKVLEEGGYKTQEVQPVDMFPHTTHVEC 451 >gi|206974209|ref|ZP_03235126.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus H3081.97] gi|206747449|gb|EDZ58839.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus H3081.97] Length = 459 Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 85/381 (22%), Positives = 165/381 (43%), Gaps = 42/381 (11%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQ------IFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63 Y++QL +K D + Q + +L+ + P HYR +++ + + + ++ Sbjct: 96 YKEQLNQKRDIVVQAFEKYMNNSLEEKIRPTLGMENPWHYRNKSQLQVGRKDEKVITGLY 155 Query: 64 DQQTKERMRIDYFM-------PGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTS-QSD 115 Q + + + I + M + ++ ++ ++ +I E + + I T+ Q+ Sbjct: 156 KQNSHQLIDIAHCMIQHKATNEATKVVRRILEKLNVSIYNEKKQKGLVRTIVTRTAVQTG 215 Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175 + VTLI + + ++ + A K +Q + + I + D+ +AG Sbjct: 216 EVQVTLITTKEELPNKEQFITEVQKQMPAVKSIMQNVNWRKTSVI-----FGDKTFKLAG 270 Query: 176 RTLIYRQIEN--------SFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGNGNFSLV 226 + +I + + +F Q N V + E AA +++ YCG G L Sbjct: 271 KEVIQETLGDLSFELSARAFFQLNPEQTVVLYNEAKKAAALTGNEKIVDAYCGVGTIGLW 330 Query: 227 LARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDID 286 LA V +++ ++ AR N + N K ++++ +E Sbjct: 331 LANDAAEVRGMDVIPEAIADARKNAKRHGFTNTKYEAGKAEQWLPKWVKE---------- 380 Query: 287 IHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCRDLSILSTTHTIERL 344 +R I VDPPR+G DD + +++ P ++Y+SCNP SL RD+ L ++ +E + Sbjct: 381 --GWRPDVIVVDPPRTGCDDKLLETILKVKPKQVVYVSCNPSSLARDVQALMKSYEVEYV 438 Query: 345 ALFDQFPYTRHMECGVLLVRK 365 D FP+T H+E V LVRK Sbjct: 439 QPVDMFPHTAHVENVVKLVRK 459 >gi|222055490|ref|YP_002537852.1| RNA methyltransferase, TrmA family [Geobacter sp. FRC-32] gi|221564779|gb|ACM20751.1| RNA methyltransferase, TrmA family [Geobacter sp. FRC-32] Length = 468 Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 62/187 (33%), Positives = 91/187 (48%), Gaps = 22/187 (11%) Query: 186 SFTQPNAG----INVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241 SF Q N+G I + EW AA G + +L+LYCG G SL LAR V +E Sbjct: 296 SFFQVNSGSARIIYEKVREW--AALTGSE-RVLDLYCGIGGISLFLARQCKEVTGIEAVD 352 Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301 +V A N N + N + + + + MRRE K +D+ I ++PPR Sbjct: 353 AAVADAERNAQLNGIGNCRFIAGDVAKLIEEMRRED-----KKVDL-------IVLNPPR 400 Query: 302 SGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMEC 358 G D+ + A I+Y+SC+PD+L RDL++L+ + + D FP T H+E Sbjct: 401 KGCDEQVLKQASALGPAKIIYVSCSPDTLARDLNLLAGLDYETREIQPVDMFPQTPHVEN 460 Query: 359 GVLLVRK 365 LL +K Sbjct: 461 VALLTKK 467 >gi|182419838|ref|ZP_02951078.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium butyricum 5521] gi|237666723|ref|ZP_04526708.1| 23S rRNA-methyltransferase [Clostridium butyricum E4 str. BoNT E BL5262] gi|182376386|gb|EDT73968.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium butyricum 5521] gi|237657922|gb|EEP55477.1| 23S rRNA-methyltransferase [Clostridium butyricum E4 str. BoNT E BL5262] Length = 451 Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 57/217 (26%), Positives = 98/217 (45%), Gaps = 31/217 (14%) Query: 157 KTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD---- 212 K + +DY+ E L L + SF Q N E + + + GD Sbjct: 258 KVNVLYGKDYIREELL----GLEFNISPFSFFQ----TNTKGAEQLYSMVRDFMGDSENK 309 Query: 213 -LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271 + +LYCG G ++A +V+ +E+ + +VEAA+ N N + N + + E + Sbjct: 310 VVFDLYCGTGTIGQIVAPKAKKVIGIELIEEAVEAAKENAKLNGLENCEFLAGDVAEIIK 369 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLC 329 ++ + + I +DPPRSG+ + V + P I+Y+SCNP +L Sbjct: 370 NVKDKPDI---------------IILDPPRSGVHPKALDYVIKFNAPEIIYVSCNPKTLV 414 Query: 330 RDLSILS-TTHTIERLALFDQFPYTRHMECGVLLVRK 365 DL +L+ + + + + D FP T H E V L++K Sbjct: 415 TDLEVLTQKGYKVVQTKVKDMFPNTPHAETVVKLIKK 451 >gi|254303473|ref|ZP_04970831.1| tRNA (uracil-5-)-methyltransferase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148323665|gb|EDK88915.1| tRNA (uracil-5-)-methyltransferase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 462 Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 45/156 (28%), Positives = 78/156 (50%), Gaps = 16/156 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ Y G G +++A+ +V A+EI K + E N + N++ + Sbjct: 319 IIDAYSGTGTIGMIMAKKAKKVYAIEIVKSASEDGEKTAKENGIENIEFINGPV------ 372 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCR 330 E+E +L + ++ R TI DPPR GL+ + + V ++YISCNP + R Sbjct: 373 ---EKELVKLIN---NNKRIDTIIFDPPRKGLEASIIDKVAELNLKEVVYISCNPSTFAR 426 Query: 331 DLSILSTT-HTIERLALFDQFPYTRHMECGVLLVRK 365 D+ + S + +++L D FP T H+EC V L+ K Sbjct: 427 DVKLFSEKGYVLKKLQAVDMFPQTSHIEC-VGLIEK 461 >gi|150005861|ref|YP_001300605.1| RNA methyltransferase [Bacteroides vulgatus ATCC 8482] gi|149934285|gb|ABR40983.1| RNA methyltransferase [Bacteroides vulgatus ATCC 8482] Length = 473 Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 62/209 (29%), Positives = 100/209 (47%), Gaps = 24/209 (11%) Query: 169 ERLTVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGDLL--ELYC 218 E + G I+ ++E SF Q N+G + L V G+ G L +LY Sbjct: 276 EVMVFKGNDHIFEEMEGLRFKIGAKSFYQTNSG-QAYNLYKVARNFAGLTGKELVYDLYT 334 Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278 G G + ++R +V+ +E ++E A+ N A N ++N K+ +E Sbjct: 335 GTGTIANFVSRQAKKVIGIEYVPEAIEDAKVNSAINGIDNTLFYAGDMKDILT-----QE 389 Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGL-DDATVGMVQAYPH-ILYISCNPDSLCRDLSILS 336 F I+ H R I DPPR+G+ +D ++ A P I+Y+SCNP + RDLS+L Sbjct: 390 F-----INQHG-RPDVIITDPPRAGMHNDVINTILFAEPQRIVYVSCNPATQARDLSLLD 443 Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVRK 365 + + + D FP+T H+E VLL ++ Sbjct: 444 AKYKVMAVQPVDMFPHTHHVENVVLLEKR 472 >gi|217958023|ref|YP_002336567.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus AH187] gi|229137289|ref|ZP_04265905.1| Uncharacterized RNA methyltransferase [Bacillus cereus BDRD-ST26] gi|217068021|gb|ACJ82271.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus AH187] gi|228646192|gb|EEL02410.1| Uncharacterized RNA methyltransferase [Bacillus cereus BDRD-ST26] Length = 459 Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 85/381 (22%), Positives = 165/381 (43%), Gaps = 42/381 (11%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQ------IFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63 Y++QL +K D + Q + +L+ + P HYR +++ + + + ++ Sbjct: 96 YKEQLNQKRDIVVQAFEKYMNNSLEEKIRPTLGMENPWHYRNKSQLQVGRKDEKVITGLY 155 Query: 64 DQQTKERMRIDYFM-------PGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTS-QSD 115 Q + + + I + M + ++ ++ ++ +I E + + I T+ Q+ Sbjct: 156 KQNSHQLIDIAHCMIQHKATNEATKVVRRILEKLNVSIYNEKKQKGLVRTIVTRTAVQTG 215 Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175 + VTLI + + ++ + A K +Q + + I + D+ +AG Sbjct: 216 EVQVTLITTKEELPNKEQFITEVQKQMPAVKSIMQNVNWRKTSVI-----FGDKTFKLAG 270 Query: 176 RTLIYRQIEN--------SFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGNGNFSLV 226 + +I + + +F Q N V + E AA +++ YCG G L Sbjct: 271 KEVIQETLGDLSFELSARAFFQLNPEQTVVLYNEAKKAAALTGNEKIVDAYCGVGTIGLW 330 Query: 227 LARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDID 286 LA V +++ ++ AR N + N K ++++ +E Sbjct: 331 LANDAAEVRGMDVIPEAIADARKNAKHHGFTNTKYEAGKAEQWLPKWVKE---------- 380 Query: 287 IHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCRDLSILSTTHTIERL 344 +R I VDPPR+G DD + +++ P ++Y+SCNP SL RD+ L ++ +E + Sbjct: 381 --GWRPDVIVVDPPRTGCDDKLLETILKVKPKQVVYVSCNPSSLARDVQALMKSYEVEYV 438 Query: 345 ALFDQFPYTRHMECGVLLVRK 365 D FP+T H+E V LVRK Sbjct: 439 QPVDMFPHTAHVENVVKLVRK 459 >gi|153801402|ref|ZP_01955988.1| TrmA family RNA methyltransferase, putative [Vibrio cholerae MZO-3] gi|124123068|gb|EAY41811.1| TrmA family RNA methyltransferase, putative [Vibrio cholerae MZO-3] Length = 375 Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 53/184 (28%), Positives = 86/184 (46%), Gaps = 19/184 (10%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 SF Q N + + A + I + +L+CG G F+L A V +EI + Sbjct: 208 KSFFQTNPKVAEQLYATARAWVREIAPTQMWDLFCGVGGFALHCAAPNTAVTGIEIEPEA 267 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 + +A+ + ++N+ + S +F+Q+ E + V+PPR G Sbjct: 268 IASAQRSAQMMGIDNLSFAALDSAKFSQSQMSAPEL---------------VLVNPPRRG 312 Query: 304 LDDATVGMVQAYP--HILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVL 361 L ++A HILY SCNP ++ +D++ L++ I R+ FD FP+T H E L Sbjct: 313 LGSELTAQLEALAPKHILYSSCNPQTMVKDIAELASYQMI-RVQWFDMFPHTDHAEVLTL 371 Query: 362 LVRK 365 LVRK Sbjct: 372 LVRK 375 >gi|331092292|ref|ZP_08341120.1| hypothetical protein HMPREF9477_01763 [Lachnospiraceae bacterium 2_1_46FAA] gi|330401724|gb|EGG81303.1| hypothetical protein HMPREF9477_01763 [Lachnospiraceae bacterium 2_1_46FAA] Length = 554 Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 59/185 (31%), Positives = 90/185 (48%), Gaps = 10/185 (5%) Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 SF Q N ++ ++ L G+ G+ + +LYCG G SL LA+ +V VEI + Sbjct: 283 SFYQVNPKQTENLYQYALEYA-GLTGEETVWDLYCGIGTISLFLAQKAKKVYGVEIVPQA 341 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 +E A+ N N + N + ++E E N ++ D I VDPPR G Sbjct: 342 IEDAKRNADINGIENAEFFVGKAEEILP----EYYENYAREHDGEKAYADVIVVDPPRKG 397 Query: 304 LDDATV-GMVQAYPH-ILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGV 360 D+ + M P I+Y+SC+ +L RDL L + ++++ D FP T H+E V Sbjct: 398 CDETLLRTMTDMSPERIVYVSCDSATLARDLKYLCENGYELQKVRAVDMFPNTVHVETVV 457 Query: 361 LLVRK 365 LVRK Sbjct: 458 KLVRK 462 >gi|121726370|ref|ZP_01679644.1| TrmA family RNA methyltransferase, putative [Vibrio cholerae V52] gi|121631118|gb|EAX63493.1| TrmA family RNA methyltransferase, putative [Vibrio cholerae V52] Length = 375 Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 47/155 (30%), Positives = 76/155 (49%), Gaps = 18/155 (11%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + +L+CG G F+L A V +EI ++ +A+ + ++N+ + S +F+Q+ Sbjct: 237 MWDLFCGVGGFALHCAAPNTAVTGIEIEPEAIASAQRSAQMMGIDNLSFAALDSAKFSQS 296 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCR 330 E + V+PPR GL ++A HILY SCNP ++ + Sbjct: 297 QMSAPEL---------------VLVNPPRRGLGSELTAQLEALAPKHILYSSCNPQTMAK 341 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 D++ L++ I R FD FP+T H E LLVRK Sbjct: 342 DIAELASYQMI-RAQWFDMFPHTNHAEVLTLLVRK 375 >gi|168333730|ref|ZP_02691983.1| RNA methyltransferase [Epulopiscium sp. 'N.t. morphotype B'] Length = 446 Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 59/215 (27%), Positives = 99/215 (46%), Gaps = 27/215 (12%) Query: 155 ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-- 212 A +T RDY+ +++ L ++ SF Q N + +L + + G Sbjct: 251 AEQTTTLDGRDYIMDKIG----ELTFKISLLSFFQVNP-VQTKVLYDIALGVAALTGSET 305 Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +L+ YCG G SL LA+ RV+ VE +V A N N + NV+ V ++++ Sbjct: 306 VLDAYCGIGTISLFLAKEAKRVVGVEAIPQAVANANENAQINGIANVEFVLGNAEDV--- 362 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCR 330 + +F + VDPPR G ++ + + A ++YISC+P +L R Sbjct: 363 --------------VLGEKFDVVVVDPPRKGCEEDFLKTIVANAPAKMVYISCDPATLAR 408 Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364 D+ + + + ++ D FPYT H+E VLL R Sbjct: 409 DVKFMYENGYVVNKVQPVDMFPYTSHVETCVLLSR 443 >gi|47567252|ref|ZP_00237966.1| RNA methyltransferase, TrmA family [Bacillus cereus G9241] gi|228913174|ref|ZP_04076813.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229042327|ref|ZP_04190077.1| Uncharacterized RNA methyltransferase [Bacillus cereus AH676] gi|47556095|gb|EAL14432.1| RNA methyltransferase, TrmA family [Bacillus cereus G9241] gi|228726986|gb|EEL78193.1| Uncharacterized RNA methyltransferase [Bacillus cereus AH676] gi|228846579|gb|EEM91592.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 459 Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 85/381 (22%), Positives = 165/381 (43%), Gaps = 42/381 (11%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQ------IFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63 Y++QL +K D + Q + +L+ + P HYR +++ + + + ++ Sbjct: 96 YKEQLNQKRDIVVQAFEKYMKNSLEEKIRPTLGMENPWHYRNKSQLQVGRKDEKVITGLY 155 Query: 64 DQQTKERMRIDYFM-------PGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTS-QSD 115 Q + + + I + M + ++ ++ ++ +I E + + I T+ Q+ Sbjct: 156 KQNSHQLIDIAHCMIQHKATNEATKVVRRILEKLNVSIYNEKKQKGLVRTIVTRTAVQTG 215 Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175 + VTLI + + ++ + A K +Q + + I + D+ +AG Sbjct: 216 EVQVTLITTKEELPNKEQFIAEVQKQMPAVKSIMQNVNWRKTSVI-----FGDKTFKLAG 270 Query: 176 RTLIYRQIEN--------SFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGNGNFSLV 226 + +I + + +F Q N V + E AA +++ YCG G L Sbjct: 271 KEVIQETLGDLSFELSARAFFQLNPEQTVVLYNEAKKAAALTGNEKIVDAYCGVGTIGLW 330 Query: 227 LARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDID 286 LA V +++ ++ AR N + N K ++++ +E Sbjct: 331 LANDAAEVRGMDVIPEAIADARKNAKRHGFTNTKYEAGKAEQWLPKWVKE---------- 380 Query: 287 IHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCRDLSILSTTHTIERL 344 +R I VDPPR+G DD + +++ P ++Y+SCNP SL RD+ L ++ +E + Sbjct: 381 --GWRPDVIVVDPPRTGCDDKLLETILKVKPKQVVYVSCNPSSLARDVQALMKSYEVEYV 438 Query: 345 ALFDQFPYTRHMECGVLLVRK 365 D FP+T H+E V LVRK Sbjct: 439 QPVDMFPHTAHVENVVKLVRK 459 >gi|282851234|ref|ZP_06260599.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus gasseri 224-1] gi|311110290|ref|ZP_07711687.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus gasseri MV-22] gi|282557202|gb|EFB62799.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus gasseri 224-1] gi|311065444|gb|EFQ45784.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus gasseri MV-22] Length = 448 Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 48/156 (30%), Positives = 75/156 (48%), Gaps = 15/156 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ Y G G L +A+H V +E+ KP+V+ A N N +NN + V ++E Sbjct: 305 VIDAYSGIGTIGLSVAKHVKAVRGMEVIKPAVDDANANAKLNGINNAEYVVGKAEEVMPR 364 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCR 330 +E + IFVDPPR GL + V+ +P I+YISCNP ++ R Sbjct: 365 WAKE------------GLKTDVIFVDPPRKGLTPEFIDAAVETHPKKIVYISCNPATMVR 412 Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRK 365 DL + + + D FP T H+E +L +K Sbjct: 413 DLQLFREQGYDFNEIDPVDMFPQTPHVEAVTVLEKK 448 >gi|281413076|ref|YP_003347155.1| RNA methyltransferase, TrmA family [Thermotoga naphthophila RKU-10] gi|281374179|gb|ADA67741.1| RNA methyltransferase, TrmA family [Thermotoga naphthophila RKU-10] Length = 439 Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 60/185 (32%), Positives = 95/185 (51%), Gaps = 21/185 (11%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 +F Q N I +++ V +QG+ +L+LY G G FS+ + RV++VE ++ Sbjct: 268 TAFFQSNYSITSKLIDHVYREL-ALQGNEVVLDLYAGIGTFSVRTSFSAARVISVESSRV 326 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302 +V+A + N N N++ V +F LK+ +S R I +DPPRS Sbjct: 327 AVKAGKANANINSRRNIEYVEQDVLDF------------LKN---YSGRADRIILDPPRS 371 Query: 303 GLD-DATVGMVQAYPH-ILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECG 359 G +A +V+ P I+Y+SC P +L RDL +L ++I + FD FP T H+E Sbjct: 372 GAGPEAMKEIVRLSPERIVYVSCEPSTLVRDLKVLVENGYSIVGVKPFDMFPQTYHVETA 431 Query: 360 VLLVR 364 V LV+ Sbjct: 432 VTLVK 436 >gi|222094222|ref|YP_002528279.1| RNA methyltransferase, trma family [Bacillus cereus Q1] gi|221238277|gb|ACM10987.1| RNA methyltransferase, TrmA family [Bacillus cereus Q1] Length = 459 Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 85/381 (22%), Positives = 164/381 (43%), Gaps = 42/381 (11%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQ------IFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63 Y++QL +K D + Q + L+ + P HYR +++ + + + ++ Sbjct: 96 YKEQLNQKRDIVVQAFQKYMNNGLEEKILPTLGMENPWHYRNKSQLQVGRKDEKVITGLY 155 Query: 64 DQQTKERMRIDYFM-------PGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTS-QSD 115 Q + + + I + M + ++ ++ ++ +I E + + I T+ Q+ Sbjct: 156 KQNSHQLIDIAHCMIQHKATNEATKVVRRILEKLNVSIYNEKKQKGLVRTIVTRTAVQTG 215 Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175 + VTLI + + ++ + A K +Q + + I + D+ +AG Sbjct: 216 EVQVTLITTKEELPNKEQFIAEVQKQMPAVKSIMQNVNWRKTSVI-----FGDKTFKLAG 270 Query: 176 RTLIYRQIEN--------SFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGNGNFSLV 226 + +I + + +F Q N V + E AA +++ YCG G L Sbjct: 271 KEVIQETLGDLSFELSARAFFQLNPEQTVVLYNEAKKAAALTGNEKIVDAYCGVGTIGLW 330 Query: 227 LARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDID 286 LA V +++ ++ AR N + N K ++++ +E Sbjct: 331 LANDAAEVRGMDVIPEAIADARKNAKRHGFTNTKYEAGKAEQWLPKWVKE---------- 380 Query: 287 IHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCRDLSILSTTHTIERL 344 +R I VDPPR+G DD + +++ P ++Y+SCNP SL RD+ L ++ +E + Sbjct: 381 --GWRPDVIVVDPPRTGCDDKLLETILKVKPKQVVYVSCNPSSLARDVQALMKSYEVEYV 438 Query: 345 ALFDQFPYTRHMECGVLLVRK 365 D FP+T H+E V LVRK Sbjct: 439 QPVDMFPHTAHVENVVKLVRK 459 >gi|121586704|ref|ZP_01676488.1| TrmA family RNA methyltransferase, putative [Vibrio cholerae 2740-80] gi|147671793|ref|YP_001215150.1| 23S rRNA methyluridine methyltransferase [Vibrio cholerae O395] gi|153818315|ref|ZP_01970982.1| TrmA family RNA methyltransferase, putative [Vibrio cholerae NCTC 8457] gi|227812495|ref|YP_002812505.1| putative TrmA family RNA methyltransferase [Vibrio cholerae M66-2] gi|229505928|ref|ZP_04395437.1| RNA methyltransferase TrmA family [Vibrio cholerae BX 330286] gi|262169193|ref|ZP_06036886.1| RNA methyltransferase TrmA family [Vibrio cholerae RC27] gi|298499706|ref|ZP_07009512.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Vibrio cholerae MAK 757] gi|172047366|sp|A5F0U5|RUMB_VIBC3 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName: Full=23S rRNA(M-5-U747)-methyltransferase gi|254766930|sp|C3LWJ3|RUMB_VIBCM RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName: Full=23S rRNA(M-5-U747)-methyltransferase gi|121549132|gb|EAX59167.1| TrmA family RNA methyltransferase, putative [Vibrio cholerae 2740-80] gi|126511128|gb|EAZ73722.1| TrmA family RNA methyltransferase, putative [Vibrio cholerae NCTC 8457] gi|146314176|gb|ABQ18716.1| putative TrmA family RNA methyltransferase [Vibrio cholerae O395] gi|227011637|gb|ACP07848.1| putative TrmA family RNA methyltransferase [Vibrio cholerae M66-2] gi|227015576|gb|ACP11785.1| putative TrmA family RNA methyltransferase [Vibrio cholerae O395] gi|229356279|gb|EEO21197.1| RNA methyltransferase TrmA family [Vibrio cholerae BX 330286] gi|262022474|gb|EEY41182.1| RNA methyltransferase TrmA family [Vibrio cholerae RC27] gi|297541687|gb|EFH77738.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Vibrio cholerae MAK 757] Length = 375 Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 46/155 (29%), Positives = 78/155 (50%), Gaps = 18/155 (11%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + +L+CG G F+L A V +EI ++ +A+ + ++N+ + S +F+Q+ Sbjct: 237 MWDLFCGVGGFALHCAAPNTAVTGIEIEPEAIASAQRSAQMMGIDNLSFAALDSAKFSQS 296 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCR 330 E + V+PPR GL ++A HILY SCNP ++ + Sbjct: 297 QMSAPEL---------------VLVNPPRRGLGSELTAQLEALAPQHILYSSCNPQTMVK 341 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 D++ L+ ++ + R+ FD FP+T H E LLVRK Sbjct: 342 DIAELA-SYQMSRVQWFDMFPHTDHAEVLTLLVRK 375 >gi|225019491|ref|ZP_03708683.1| hypothetical protein CLOSTMETH_03444 [Clostridium methylpentosum DSM 5476] gi|224947712|gb|EEG28921.1| hypothetical protein CLOSTMETH_03444 [Clostridium methylpentosum DSM 5476] Length = 467 Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 50/156 (32%), Positives = 78/156 (50%), Gaps = 15/156 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L++LYCG G L +A RV+ VEI +VE AR + N V N + + +KE ++ Sbjct: 319 LVDLYCGAGTIGLSMAGKAKRVIGVEIIPVAVEDARRSAQRNGVRNAEFLCADAKEAARS 378 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCR 330 + ++ R + VDPPR G D + + + A I+ ISCNP + R Sbjct: 379 LAQQ------------GLRPDVVIVDPPRKGCDASVLQSICEMAPQRIVMISCNPATAAR 426 Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRK 365 D +L + +E +A D F T H+EC + LV++ Sbjct: 427 DCGLLQQQGYRVEEVAAADLFSRTLHVECVISLVKE 462 >gi|42779622|ref|NP_976869.1| RNA methyltransferase [Bacillus cereus ATCC 10987] gi|118476178|ref|YP_893329.1| tRNA (uracil-5-)-methyltransferase [Bacillus thuringiensis str. Al Hakam] gi|196045225|ref|ZP_03112457.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus 03BB108] gi|225862467|ref|YP_002747845.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus 03BB102] gi|229182811|ref|ZP_04310050.1| Uncharacterized RNA methyltransferase [Bacillus cereus BGSC 6E1] gi|229194804|ref|ZP_04321591.1| Uncharacterized RNA methyltransferase [Bacillus cereus m1293] gi|51316697|sp|Q73E18|Y542_BACC1 RecName: Full=Uncharacterized RNA methyltransferase BCE_0542 gi|42735538|gb|AAS39477.1| RNA methyltransferase, TrmA family [Bacillus cereus ATCC 10987] gi|118415403|gb|ABK83822.1| 23S rRNA m(5)U-1939 methyltransferase [Bacillus thuringiensis str. Al Hakam] gi|196023809|gb|EDX62484.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus 03BB108] gi|225790988|gb|ACO31205.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus 03BB102] gi|228588652|gb|EEK46683.1| Uncharacterized RNA methyltransferase [Bacillus cereus m1293] gi|228600691|gb|EEK58272.1| Uncharacterized RNA methyltransferase [Bacillus cereus BGSC 6E1] Length = 459 Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 85/381 (22%), Positives = 164/381 (43%), Gaps = 42/381 (11%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQ------IFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63 Y++QL +K D + Q + L+ + P HYR +++ + + + ++ Sbjct: 96 YKEQLNQKRDIVVQAFQKYMNNGLEEKIRPTLGMENPWHYRNKSQLQVGRKDEKVITGLY 155 Query: 64 DQQTKERMRIDYFM-------PGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTS-QSD 115 Q + + + I + M + ++ ++ ++ +I E + + I T+ Q+ Sbjct: 156 KQNSHQLIDIAHCMIQHKATNEATKVVRRILEKLNVSIYNEKKQKGLVRTIVTRTAVQTG 215 Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175 + VTLI + + ++ + A K +Q + + I + D+ +AG Sbjct: 216 EVQVTLITTKEELPNKEQFIAEVQKQMPAVKSIMQNVNWRKTSVI-----FGDKTFKLAG 270 Query: 176 RTLIYRQIEN--------SFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGNGNFSLV 226 + +I + + +F Q N V + E AA +++ YCG G L Sbjct: 271 KEVIQETLGDLSFELSARAFFQLNPEQTVVLYNEAKKAAALTGNEKIVDAYCGVGTIGLW 330 Query: 227 LARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDID 286 LA V +++ ++ AR N + N K ++++ +E Sbjct: 331 LANDAAEVRGMDVIPEAIADARKNAKRHGFTNTKYEAGKAEQWLPKWVKE---------- 380 Query: 287 IHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCRDLSILSTTHTIERL 344 +R I VDPPR+G DD + +++ P ++Y+SCNP SL RD+ L ++ +E + Sbjct: 381 --GWRPDVIVVDPPRTGCDDKLLETILKVKPKQVVYVSCNPSSLARDVQALMKSYEVEYV 438 Query: 345 ALFDQFPYTRHMECGVLLVRK 365 D FP+T H+E V LVRK Sbjct: 439 QPVDMFPHTAHVENVVKLVRK 459 >gi|311029127|ref|ZP_07707217.1| putative RNA methyltransferase [Bacillus sp. m3-13] Length = 469 Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 46/153 (30%), Positives = 76/153 (49%), Gaps = 14/153 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G L LA V ++ S++ A+ N + N+K V ++++ Sbjct: 325 VVDAYCGVGTIGLWLAEGAGEVRGMDTIAESIDDAKENAKRHGYTNMKYVAGKAEKWLPR 384 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYP-HILYISCNPDSLCR 330 +E +R TI VDPPR+GLD+ + V P + +Y+SCNP +L + Sbjct: 385 WVKE------------GWRPDTIVVDPPRTGLDETFMKTVLDVEPKNFVYVSCNPSTLAK 432 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363 D+ LS + ++ + D FP T H+EC LL Sbjct: 433 DIQFLSKKYKVDWIQPVDMFPQTAHVECCALLT 465 >gi|262066022|ref|ZP_06025634.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Fusobacterium periodonticum ATCC 33693] gi|291380272|gb|EFE87790.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Fusobacterium periodonticum ATCC 33693] Length = 451 Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 45/157 (28%), Positives = 78/157 (49%), Gaps = 17/157 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS-SKEFTQ 271 +++ Y G G +++A+ +V A+EI K + E + N + N++ + KE + Sbjct: 308 IVDAYSGTGTIGMIMAKKAKKVYAIEIVKSASEDGKRTAKENGIENIEFINGPVEKELVK 367 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLC 329 + N + ID TI DPPR GL+ + + V ++YISCNP + Sbjct: 368 II------NNNQKID-------TIIFDPPRKGLEASIIDTVAELNLKEVVYISCNPSTFA 414 Query: 330 RDLSILSTT-HTIERLALFDQFPYTRHMECGVLLVRK 365 RD+ + S + +++L D FP T H+EC L+ R+ Sbjct: 415 RDVKLFSEKGYVLKKLQAVDMFPQTSHIECVGLIERR 451 >gi|269120598|ref|YP_003308775.1| RNA methyltransferase, TrmA family [Sebaldella termitidis ATCC 33386] gi|268614476|gb|ACZ08844.1| RNA methyltransferase, TrmA family [Sebaldella termitidis ATCC 33386] Length = 451 Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 56/218 (25%), Positives = 109/218 (50%), Gaps = 29/218 (13%) Query: 155 ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-- 212 N+ K+ +Y++E L + ++ +SF Q N+ + + + GD Sbjct: 254 GNEHKLIYGSEYLEEELD----GIKFKIYPDSFFQINSEQTIKLYNKAMEYL----GDSE 305 Query: 213 ---LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269 +++ + G G +++++ +V +E + SV +A++ A N++ NV+ ++ E Sbjct: 306 DKRIVDAFSGTGTLGMLVSKTARKVYCIESMESSVISAKHTAAENNIKNVRF-KIGKVE- 363 Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDS 327 N+L +I + + + I DPPR G+D+ T+ + + I+YISCNP + Sbjct: 364 ----------NKLPEI-LKNTKMDGIIFDPPRKGIDENTLKSIGKHGIERIVYISCNPST 412 Query: 328 LCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364 L RD+ IL+ + +E+LA D FP T H+E L ++ Sbjct: 413 LARDVKILTDLGYRLEKLAAVDMFPQTHHIEAVSLFLK 450 >gi|193213715|ref|YP_001999668.1| RNA methyltransferase, TrmA family [Chlorobaculum parvum NCIB 8327] gi|193087192|gb|ACF12468.1| RNA methyltransferase, TrmA family [Chlorobaculum parvum NCIB 8327] Length = 479 Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 71/255 (27%), Positives = 116/255 (45%), Gaps = 22/255 (8%) Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY 166 ++ +TS D ++ + RL + A E + L + + RK + + + Y Sbjct: 234 VNIVTSWHDAELMQALKERL-EVAMPEQQMTLLNNVTTRK---NTVATGEQEYVISGDGY 289 Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFSL 225 V ERL L +R NSF Q N + + ++A D + +LYCG G +L Sbjct: 290 VTERLG----DLDFRISANSFFQTNTRQAETLYDQIIAVGSITPEDTVYDLYCGTGTITL 345 Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285 LARH + + +E+ + +V A+ N N ++N + K F AM+ E Sbjct: 346 YLARHCKQAIGIEVVESAVRDAQMNAELNGLSNTVFFQADLKNF-HAMQEALE------- 397 Query: 286 DIHSYRFKTIFVDPPRSGL-DDATVGMVQAYPH-ILYISCNPDSLCRD-LSILSTTHTIE 342 + + I DPPR+G+ A M++ P I+Y+SCNPD+L RD I + + + Sbjct: 398 --PYAKPRIIVTDPPRAGMHPKALDTMLKLQPERIVYVSCNPDNLARDGKEIAARGYRMT 455 Query: 343 RLALFDQFPYTRHME 357 D FP T H+E Sbjct: 456 SAQPVDMFPQTNHIE 470 >gi|218132971|ref|ZP_03461775.1| hypothetical protein BACPEC_00832 [Bacteroides pectinophilus ATCC 43243] gi|217991844|gb|EEC57848.1| hypothetical protein BACPEC_00832 [Bacteroides pectinophilus ATCC 43243] Length = 405 Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 60/198 (30%), Positives = 100/198 (50%), Gaps = 28/198 (14%) Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-------GDLLELYCGNGNFSLVLARH 230 + YR SF Q NA ++ L TK I+ +++ Y G G + +A H Sbjct: 226 ITYRISPKSFYQVNA------VQTELLYTKAIELARLTGSETVIDAYSGIGTIGMTVAGH 279 Query: 231 FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY 290 +V++VE +V+ AR N AN+++N+ I + F MRR + N D+ Sbjct: 280 VRKVISVETNTDAVKDARRNAKANNISNIDIYADDAGRF---MRRMADNNETCDV----- 331 Query: 291 RFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCRDLSILS-TTHTIERLALF 347 IF+DPPR+G D + +++ P ++YISC P++L RDL++L+ + + + Sbjct: 332 ----IFMDPPRAGSDKVFLNSILKLMPSKVIYISCCPETLARDLAVLARRAYRVAAIQPV 387 Query: 348 DQFPYTRHMECGVLLVRK 365 D FP+T +E V L R+ Sbjct: 388 DMFPWTSGIETIVCLERR 405 >gi|220934276|ref|YP_002513175.1| RNA methyltransferase, TrmA family [Thioalkalivibrio sp. HL-EbGR7] gi|219995586|gb|ACL72188.1| RNA methyltransferase, TrmA family [Thioalkalivibrio sp. HL-EbGR7] Length = 446 Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 62/186 (33%), Positives = 88/186 (47%), Gaps = 23/186 (12%) Query: 187 FTQPNAGINVHMLEWVLAATK-GIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 F Q N IN M+ + + G + +L+L+CG GNFSL LAR V+ VE V Sbjct: 275 FVQVNRDINRAMVPRAIELLEVGPEHRVLDLFCGLGNFSLPLARRAGHVVGVEGEAVMVA 334 Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD 305 AR N N + NV EF A R+ + D F I +DPPR+G Sbjct: 335 RARDNAEHNGIRNV--------EFHAADLAARD---VIDAPWARAGFDRILLDPPRAG-- 381 Query: 306 DATVGMVQ-----AYPHILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTRHMEC 358 G+++ P I+Y+SCNP +L RD L S + +E + D FP+T H+E Sbjct: 382 --AAGVMKLLGRLNVPRIVYVSCNPATLARDADTLVHSLGYRLEAAGVMDMFPHTAHVES 439 Query: 359 GVLLVR 364 + V+ Sbjct: 440 MAVFVK 445 >gi|269123421|ref|YP_003305998.1| RNA methyltransferase, TrmA family [Streptobacillus moniliformis DSM 12112] gi|268314747|gb|ACZ01121.1| RNA methyltransferase, TrmA family [Streptobacillus moniliformis DSM 12112] Length = 466 Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 44/158 (27%), Positives = 80/158 (50%), Gaps = 15/158 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + +L+ G G +++++ V +E+ + +V A N N + N K + Sbjct: 321 VFDLFSGTGTIGQIVSKYSKEVYGIELIEEAVIKANENAIKNGITNAKFIAGDV------ 374 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330 F +L++ D + + + +DPPRSG+ + T+ + Y +I+Y+SCNP +L Sbjct: 375 ------FEKLREFDKENIKPDILILDPPRSGVGEKTILKLLEYNVNYIIYVSCNPKTLAE 428 Query: 331 DLSILS-TTHTIERLALFDQFPYTRHMECGVLLVRKPS 367 DL I ++ ++R+ D F YT H+EC VL+ R S Sbjct: 429 DLKIFEYNSYILKRVVCVDMFGYTPHVECIVLIQRVKS 466 >gi|90579648|ref|ZP_01235457.1| 23S rRNA (uracil-5-)-methyltransferase [Vibrio angustum S14] gi|90439222|gb|EAS64404.1| 23S rRNA (uracil-5-)-methyltransferase [Vibrio angustum S14] Length = 384 Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 47/153 (30%), Positives = 78/153 (50%), Gaps = 18/153 (11%) Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271 + +L+CG G F+L A + V +EI ++E+A+++ V N++ + S F+Q Sbjct: 243 SMWDLFCGVGGFALHCAEEVEHVTGIEIEPEAIESAKHSAEIMGVTNLRFAALDSTSFSQ 302 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLC 329 + E + V+PPR G+ + + A HI+Y SCNP +L Sbjct: 303 SNESAPEL---------------VLVNPPRRGIGEQLCQQLNDFAPKHIIYSSCNPYTLE 347 Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362 +DL+ L T + + +L FD FP+T H+E VLL Sbjct: 348 QDLARL-TGYKVIKLQWFDMFPHTEHVEVMVLL 379 >gi|242398439|ref|YP_002993863.1| 23S rRNA (Uracil-5-)-methyltransferase [Thermococcus sibiricus MM 739] gi|242264832|gb|ACS89514.1| 23S rRNA (Uracil-5-)-methyltransferase [Thermococcus sibiricus MM 739] Length = 419 Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 55/175 (31%), Positives = 87/175 (49%), Gaps = 22/175 (12%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSF Q N+ V++++ V +G + +L+LY G G F + LAR +V +E+ +V Sbjct: 254 NSFFQTNSYQAVNLVKKVGDFVEGEK--VLDLYSGVGTFGIYLARRGFKVEGIEVNPFAV 311 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 E A N N VN EF RE ++D+ ++ T+ VDPPR+GL Sbjct: 312 EMANRNARINEVN---------AEFKVGEDRE-----VRDLGVYD----TLIVDPPRAGL 353 Query: 305 DDATVGMVQAYP--HILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHME 357 + + P ++Y+SCNP + +L L + IE + D FP+T H+E Sbjct: 354 HPKLIKKLLKDPPETLVYVSCNPRTFSENLKKLKEGYAIEEIVALDMFPHTPHIE 408 >gi|239825905|ref|YP_002948529.1| RNA methyltransferase, TrmA family [Geobacillus sp. WCH70] gi|239806198|gb|ACS23263.1| RNA methyltransferase, TrmA family [Geobacillus sp. WCH70] Length = 459 Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 53/157 (33%), Positives = 77/157 (49%), Gaps = 17/157 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G SL LA+ +V VE+ ++E A+ N N + NV+ + E Sbjct: 314 VIDAYCGIGTISLFLAKKAKKVYGVEVVPEAIEDAKRNAELNGITNVE---FAIGEAEAV 370 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330 + + E R I VDPPR G D+ + + A ++Y+SCNP +L R Sbjct: 371 IPKWYE---------QGIRADCIVVDPPRKGCDETLLQTIIAMKPKRVVYVSCNPATLAR 421 Query: 331 DLSIL--STTHTIERLALFDQFPYTRHMECGVLLVRK 365 DL IL TIE + D FP+T H+EC LV K Sbjct: 422 DLRILEDGGYQTIE-VQPVDMFPHTAHVECVSRLVLK 457 >gi|291537472|emb|CBL10584.1| 23S rRNA m(5)U-1939 methyltransferase [Roseburia intestinalis M50/1] Length = 473 Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 72/272 (26%), Positives = 120/272 (44%), Gaps = 38/272 (13%) Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD 165 Q++ L+ +++ A++ +L ++ + L+ LH + + + T I +D Sbjct: 223 QMEELSGENESALLEGWVKKLCEEKYDGV---LKGILHTKNDSVADTIKNEGTDILFGQD 279 Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLE---------L 216 + E L L ++ SF Q N+ E + + GD L+ L Sbjct: 280 FFYEELL----GLKFKITPFSFFQTNS----LGAEVLYQTAREFIGDALDDEANQTVFDL 331 Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276 Y G G + +L+ +V+ VEI + +V AAR N A N + N EF Sbjct: 332 YSGTGTIAQILSPVAKKVIGVEIVEEAVVAARENAALNGLTNC--------EFIAG---- 379 Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSI 334 + LK ID + I +DPPR G+ + + Y P ++YISC P SL RDL + Sbjct: 380 ---DVLKVIDTIGEKPDYIVLDPPRDGIHPKALEKIIRYNVPQMVYISCKPTSLARDLEV 436 Query: 335 LST-THTIERLALFDQFPYTRHMECGVLLVRK 365 L + ++++ D FP T ++E VLL K Sbjct: 437 LQARGYQVKKVQCVDMFPSTGNVETVVLLSHK 468 >gi|229101137|ref|ZP_04231903.1| Uncharacterized RNA methyltransferase [Bacillus cereus Rock3-28] gi|228682265|gb|EEL36376.1| Uncharacterized RNA methyltransferase [Bacillus cereus Rock3-28] Length = 465 Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 48/149 (32%), Positives = 77/149 (51%), Gaps = 15/149 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G+ SL LA+ +V VEI ++E A N A N++ N + ++ Sbjct: 322 VIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFGVGEAEVVIPK 381 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330 +E + D T+ VDPPR G DDA + ++ P ++Y+SCNP +L R Sbjct: 382 WYKE---GIIAD---------TMVVDPPRKGCDDALLNTIIDMKPKRVVYVSCNPATLAR 429 Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMEC 358 DL +L + + + D FP+T H+EC Sbjct: 430 DLKVLEEGGYKTQEVQPVDMFPHTTHVEC 458 >gi|110598563|ref|ZP_01386831.1| RNA methyltransferase, TrmA family [Chlorobium ferrooxidans DSM 13031] gi|110339797|gb|EAT58304.1| RNA methyltransferase, TrmA family [Chlorobium ferrooxidans DSM 13031] Length = 480 Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 94/397 (23%), Positives = 169/397 (42%), Gaps = 69/397 (17%) Query: 9 QYEQQLAEKVDRLR---QMMLAFQVPNLQ--IFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63 +YE Q+A K +++ + + +F P + + + P+HYR + EF + +++ Sbjct: 94 RYEAQIAYKEKKVKDALEHLGSFSNPPVSPVLAAASPVHYRNKIEFSC----SSMRYLLP 149 Query: 64 DQQTKERMR------IDYFMPGSL----------LINALMIEMMATIR-------LEPL- 99 ++ ++E + + + PG+ L LM ++ R LEP Sbjct: 150 EELSQEELERPKNFALGFHTPGNFEKVIDIDYCYLATELMNRVLKLTREFALANNLEPYG 209 Query: 100 LRAKLFQIDYL----TSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQI--QLIG 153 +RA + L + + +V L+ + ++ L+ AL K + + Sbjct: 210 VRAHTGFLRNLVVRFSEDQRELMVNLVTSWYDEKLMQQYNAALQSALAGEKVTVVNNVTS 269 Query: 154 RANKTKICLDRDYVDERLTVAGRTLI--------YRQIENSFTQPNAGINVHMLEWVLAA 205 R N +E ++G +I +R NSF Q N+ +L + Sbjct: 270 RKNGVATG------EEEFLLSGTGIITERLGELDFRISANSFFQTNSR-QAEVLYNAILD 322 Query: 206 TKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVR 263 G+ D + +LYCG G +L +A+H + +E+ + S+ AR N A N V N + Sbjct: 323 VAGLNEDDTVYDLYCGTGTITLYMAKHCRSAVGLEVVESSINDARSNAALNGVENADFYQ 382 Query: 264 MSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL-DDATVGMVQAYP-HILYI 321 + K+F L ++ H I DPPR+G+ A M++ P I+Y+ Sbjct: 383 VDLKDFHAI---------LDKLESHGAP-GVIITDPPRAGMHPKALETMLRFRPRRIVYV 432 Query: 322 SCNPDSLCRD-LSILSTTHTIERLALFDQFPYTRHME 357 SCNP SL RD I +T++ + D FP+T H+E Sbjct: 433 SCNPASLARDGKEIALQGYTLKSVQPVDMFPHTAHIE 469 >gi|229171165|ref|ZP_04298759.1| Uncharacterized RNA methyltransferase [Bacillus cereus MM3] gi|228612343|gb|EEK69571.1| Uncharacterized RNA methyltransferase [Bacillus cereus MM3] Length = 465 Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 48/149 (32%), Positives = 77/149 (51%), Gaps = 15/149 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G+ SL LA+ +V VEI ++E A N A N++ N + ++ Sbjct: 322 VIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFGVGEAEVVIPK 381 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330 +E + D T+ VDPPR G DDA + ++ P ++Y+SCNP +L R Sbjct: 382 WYKE---GIIAD---------TMVVDPPRKGCDDALLNTIIDMKPKRVVYVSCNPATLAR 429 Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMEC 358 DL +L + + + D FP+T H+EC Sbjct: 430 DLKVLEEGGYKTQEVQPVDMFPHTTHVEC 458 >gi|166154084|ref|YP_001654202.1| rRNA methyltransferase [Chlamydia trachomatis 434/Bu] gi|166154959|ref|YP_001653214.1| rRNA methyltransferase [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|301335289|ref|ZP_07223533.1| rRNA methyltransferase [Chlamydia trachomatis L2tet1] gi|165930072|emb|CAP03555.1| rRNA methyltransferase [Chlamydia trachomatis 434/Bu] gi|165930947|emb|CAP06509.1| rRNA methyltransferase [Chlamydia trachomatis L2b/UCH-1/proctitis] Length = 396 Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 69/255 (27%), Positives = 117/255 (45%), Gaps = 43/255 (16%) Query: 124 HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQI 183 LLD +I + L AR +T ++ ++L++ GR+ ++ Sbjct: 169 QSLLDSGLPITSIFWEEKLSARNSPTTF-----RTTHLYGAPFLKQQLSIDGRSSLFHIR 223 Query: 184 ENSFTQPNAGINVHMLEWVLAATKGIQG-----------DLLELYCGNGNFSLVLARHFD 232 SF QP + L A K IQ LL+LYCG G ++LA + Sbjct: 224 PRSFFQPQS----------LQAEKIIQTIKEFIDPCGEETLLDLYCGAGTIGILLAPYVK 273 Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292 +++ VE+ +V +A+ NI N V ++++ +K+F + R E L DI Sbjct: 274 KIIGVELVPDAVASAQENIQLNSV-DMEVFLEDAKQFCK--RNE----NLPSPDI----- 321 Query: 293 KTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQ 349 + +DPPR G+ + + + A I+Y+SCNP + ++ S+L + + + DQ Sbjct: 322 --VVIDPPRCGMQNKALKYLLRMAPKKIVYVSCNPLTQIQECSVLVEQGYQLRHMQPIDQ 379 Query: 350 FPYTRHMECGVLLVR 364 FP+T H+E VLL R Sbjct: 380 FPHTNHLENIVLLER 394 >gi|50302631|ref|XP_451251.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140] gi|49640382|emb|CAH02839.1| KLLA0A05665p [Kluyveromyces lactis] Length = 578 Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 57/160 (35%), Positives = 79/160 (49%), Gaps = 21/160 (13%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L++ YCG+G FS+ ++ DRV+ VE++ SV A N AN V N K + Sbjct: 431 LVDAYCGSGLFSITSSKGVDRVIGVEVSADSVAFAERNAKANGVENCKFI---------V 481 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330 + E+ F ID R ++ +DPPR G DD + + Y I+YISCN S R Sbjct: 482 GKAEKIFG---SIDTPCDR-TSVILDPPRKGCDDIFMKQLAEYNPARIVYISCNVHSQAR 537 Query: 331 DLS-ILSTT-----HTIERLALFDQFPYTRHMECGVLLVR 364 D+ L T + IE L FD FP T H+E +L R Sbjct: 538 DVEYFLKETENGKHYKIESLRGFDFFPQTHHVESVCVLSR 577 >gi|315303539|ref|ZP_07874104.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria ivanovii FSL F6-596] gi|313628091|gb|EFR96659.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria ivanovii FSL F6-596] Length = 459 Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 46/152 (30%), Positives = 74/152 (48%), Gaps = 14/152 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L++ YCG G A V ++ S+E A+ N N + NV + + Sbjct: 315 LVDAYCGVGTIGQAFASKVKEVRGMDTIPESIEDAKRNAEKNGLENV---------YYEV 365 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQA-YPHILYISCNPDSLCR 330 + E F + ++ + VDPPRSG D +G ++QA ++Y+SCNP +L R Sbjct: 366 GKAEEVFPKWMK---EGFKPDAVIVDPPRSGCDQGLIGSLLQAEAKQLVYVSCNPSTLAR 422 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLL 362 DL++L+ + + + D FP T H+E VLL Sbjct: 423 DLALLAKKYRVRYMQPVDMFPQTAHVETVVLL 454 >gi|289435036|ref|YP_003464908.1| RNA methyltransferase [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289171280|emb|CBH27822.1| RNA methyltransferase [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 459 Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 46/152 (30%), Positives = 74/152 (48%), Gaps = 14/152 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L++ YCG G A V ++ S+E A+ N N + NV + + Sbjct: 315 LVDAYCGVGTIGQAFASKVKEVRGMDTIPESIEDAKRNAEKNGLENV---------YYEV 365 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQA-YPHILYISCNPDSLCR 330 + E F + ++ + VDPPRSG D +G ++QA ++Y+SCNP +L R Sbjct: 366 GKAEEVFPKWMK---EGFKPDAVIVDPPRSGCDQGLIGSLLQAEAKQLVYVSCNPSTLAR 422 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLL 362 DL++L+ + + + D FP T H+E VLL Sbjct: 423 DLALLAKKYRVRYMQPVDMFPQTAHVETVVLL 454 >gi|154492137|ref|ZP_02031763.1| hypothetical protein PARMER_01769 [Parabacteroides merdae ATCC 43184] gi|154087362|gb|EDN86407.1| hypothetical protein PARMER_01769 [Parabacteroides merdae ATCC 43184] Length = 474 Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 57/182 (31%), Positives = 91/182 (50%), Gaps = 18/182 (9%) Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 SF Q N+ + L V G+ G+ + +LY G G + ++R +V+ +E + Sbjct: 299 SFYQTNSE-QAYELYKVAREFAGLTGNEMVYDLYTGTGTIANFVSRQAKKVIGIEYVPEA 357 Query: 244 VEAARYNIAANHVNNVKIVRMSSKE-FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302 +E A+ N + N + N K+ TQ I+ H R I DPPR+ Sbjct: 358 IEDAKVNSSLNKIENTLFYAGDMKDILTQDF-----------INQHG-RPDVIITDPPRA 405 Query: 303 GL-DDATVGMVQAYPH-ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360 G+ DD ++ A P I+Y+SCNP + RDLS+LS + ++++ D FP+T H+E V Sbjct: 406 GMHDDVINTILFAEPERIVYVSCNPATQARDLSLLSVKYAVKKVQPVDMFPHTHHVENVV 465 Query: 361 LL 362 LL Sbjct: 466 LL 467 >gi|77407679|ref|ZP_00784434.1| RNA methyltransferase, TrmA family [Streptococcus agalactiae COH1] gi|77173678|gb|EAO76792.1| RNA methyltransferase, TrmA family [Streptococcus agalactiae COH1] Length = 451 Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 95/386 (24%), Positives = 161/386 (41%), Gaps = 52/386 (13%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHDGDDLYHI 61 QY++QL K D +RQ ++ F+ + I SEP HYR + +F + G ++ Sbjct: 88 QYDKQLEFKTDIIRQALMKFKPEGYENYEIRKTIGMSEPEHYRAKLQFQVRSFGGNVKAG 147 Query: 62 MFDQQTKERMRIDYFMPGSLLINALM---IEMMATIRLEPLLRAKLFQIDYLTSQSDQAI 118 ++ Q T + I + L ++ E++ +L K+ + + + QA Sbjct: 148 LYAQGTHRLIDIKDCLVQDRLTQEMINRVAELLGKYKLPIYNERKIAGVRTVMIRRAQAS 207 Query: 119 --VTLIY---HRL-LDDAWRECAIRLRDALHARKYQIQLIGRANK------TKICLDRDY 166 V LI+ RL DD E +R+ + + + T++ ++ Sbjct: 208 GEVQLIFITSKRLDFDDVVIEL---VREFPELKTVAVNINASKTSDIYGQITEVIWGQES 264 Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAG-INVHMLEWVLAATKGIQGDLLELYCGNGNFSL 225 ++E + G +L R +F Q N + E V A DL++ YCG G L Sbjct: 265 INEEVLDYGFSLSPR----AFYQLNPKQTQILYSEAVKALDVKEDDDLIDAYCGVGTIGL 320 Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285 A V ++I +++ A+ N A H+ FT E + +DI Sbjct: 321 AFAGKVKSVRGMDIIPEAIQDAKEN--ALHMG-----------FTNT---HYEAGKAEDI 364 Query: 286 D----IHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILSTTH 339 +R + VDPPR+GLDD + + P ++Y+SCN +L RDL L+ + Sbjct: 365 IPRWYSEGFRANALIVDPPRTGLDDKLLNTILKMPPEKMVYVSCNTSTLARDLVTLTKVY 424 Query: 340 TIERLALFDQFPYTRHMECGVLLVRK 365 + + D FP+T E V L RK Sbjct: 425 HVHYIQSVDMFPHTARTEAVVKLQRK 450 >gi|229514343|ref|ZP_04403804.1| RNA methyltransferase TrmA family [Vibrio cholerae TMA 21] gi|229348323|gb|EEO13281.1| RNA methyltransferase TrmA family [Vibrio cholerae TMA 21] Length = 375 Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 53/184 (28%), Positives = 86/184 (46%), Gaps = 19/184 (10%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 SF Q N + + A + I + +L+CG G F+L A V +EI + Sbjct: 208 KSFFQTNPKVAEQLYATARAWVREIAPTQMWDLFCGVGGFALHCAAPDTAVTGIEIEPEA 267 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 + +A+ + ++N+ + S +F+Q+ E + V+PPR G Sbjct: 268 IASAQRSAQMMGIDNLSFAALDSAKFSQSQMSAPEL---------------VLVNPPRRG 312 Query: 304 LDDATVGMVQAYP--HILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVL 361 L ++A HILY SCNP ++ +D++ L++ I R+ FD FP+T H E L Sbjct: 313 LGSELTAQLEALAPQHILYSSCNPQTMVKDIAELASYQMI-RVQWFDMFPHTDHAEVLTL 371 Query: 362 LVRK 365 LVRK Sbjct: 372 LVRK 375 >gi|229154085|ref|ZP_04282210.1| Uncharacterized RNA methyltransferase [Bacillus cereus ATCC 4342] gi|228629365|gb|EEK86067.1| Uncharacterized RNA methyltransferase [Bacillus cereus ATCC 4342] Length = 465 Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 47/149 (31%), Positives = 78/149 (52%), Gaps = 15/149 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G+ SL LA+ +V VEI ++E A+ N A N++ N + ++ Sbjct: 322 VIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDAKRNAALNNMTNAEFGVGEAEVVIPK 381 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330 +E + D T+ VDPPR G D+A + ++ P ++Y+SCNP +L R Sbjct: 382 WYKE---GVIAD---------TMVVDPPRKGCDEALLSTIIDMKPKRVVYVSCNPATLAR 429 Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMEC 358 DL +L + + + D FP+T H+EC Sbjct: 430 DLKVLEEGGYKTQEVQPVDMFPHTTHVEC 458 >gi|170754817|ref|YP_001783005.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum B1 str. Okra] gi|169120029|gb|ACA43865.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum B1 str. Okra] Length = 461 Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 46/155 (29%), Positives = 76/155 (49%), Gaps = 15/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + + YCG G SL L++ +V VEI K +++ A+ N N ++N + S+E Sbjct: 316 VFDAYCGTGTISLFLSQKAKKVYGVEIIKEAIDNAKDNAKENRIDNAEFFVGKSEEV--- 372 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330 + D+ + + VDPPR G + + + A I+Y+SC+P +L R Sbjct: 373 ---------IPDLIDKGIKADVVVVDPPRKGCEKTLLEAIAATKPKRIVYVSCDPGTLAR 423 Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364 DL IL+ + + + D FP T H+E VL+ R Sbjct: 424 DLGILNGLGYETKEVQTVDMFPQTSHVETIVLIQR 458 >gi|330897094|gb|EGH28572.1| 23S rRNA m(5)U1939 methyltransferase [Pseudomonas syringae pv. japonica str. M301072PT] Length = 230 Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 57/184 (30%), Positives = 91/184 (49%), Gaps = 21/184 (11%) Query: 185 NSFTQPNAGINVHMLE----WVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240 F Q NA +N M+E W LA K + +++L+CG GNF+L LA V+AVE Sbjct: 58 GDFIQVNAAVNTAMIEQAMQW-LAPAKDER--VMDLFCGLGNFALPLAGLAREVVAVEGV 114 Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300 VE A N +N ++NV+ + + +Q L +D + F + +DPP Sbjct: 115 ATMVERAAVNAMSNDLHNVQFFQ---ADLSQP---------LTHVDWAAEGFSAVLLDPP 162 Query: 301 RSGLDDATVGMVQAYP-HILYISCNPDSLCRD-LSILSTTHTIERLALFDQFPYTRHMEC 358 R G + + + +LY+SCNP +L RD + ++ + ++R + D FP T H+E Sbjct: 163 RDGAFEVVRQIRKTGARRLLYVSCNPATLARDAVELIRQGYRLKRAGILDMFPQTAHVEA 222 Query: 359 GVLL 362 L Sbjct: 223 MALF 226 >gi|229089447|ref|ZP_04220718.1| Uncharacterized RNA methyltransferase [Bacillus cereus Rock3-42] gi|228693924|gb|EEL47616.1| Uncharacterized RNA methyltransferase [Bacillus cereus Rock3-42] Length = 465 Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 47/149 (31%), Positives = 78/149 (52%), Gaps = 15/149 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G+ SL LA+ +V VEI ++E A+ N A N++ N + ++ Sbjct: 322 VIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDAKRNAALNNMTNAEFGVGEAEVVIPK 381 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330 +E + D T+ VDPPR G D+A + ++ P ++Y+SCNP +L R Sbjct: 382 WYKE---GVIAD---------TMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLAR 429 Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMEC 358 DL +L + + + D FP+T H+EC Sbjct: 430 DLKVLEEGGYKTQEVQPVDMFPHTTHVEC 458 >gi|118476081|ref|YP_893232.1| RNA methyltransferase [Bacillus thuringiensis str. Al Hakam] gi|229182714|ref|ZP_04309955.1| Uncharacterized RNA methyltransferase [Bacillus cereus BGSC 6E1] gi|118415306|gb|ABK83725.1| 23S rRNA m(5)U-1939 methyltransferase [Bacillus thuringiensis str. Al Hakam] gi|228600799|gb|EEK58378.1| Uncharacterized RNA methyltransferase [Bacillus cereus BGSC 6E1] Length = 465 Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 47/149 (31%), Positives = 78/149 (52%), Gaps = 15/149 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G+ SL LA+ +V VEI ++E A+ N A N++ N + ++ Sbjct: 322 VIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDAKRNAALNNMTNAEFGVGEAEVVIPK 381 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330 +E + D T+ VDPPR G D+A + ++ P ++Y+SCNP +L R Sbjct: 382 WYKE---GVIAD---------TMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLAR 429 Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMEC 358 DL +L + + + D FP+T H+EC Sbjct: 430 DLKVLEEGGYKTQEVQPVDMFPHTTHVEC 458 >gi|228983573|ref|ZP_04143778.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228776169|gb|EEM24530.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 458 Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 47/149 (31%), Positives = 78/149 (52%), Gaps = 15/149 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G+ SL LA+ +V VEI ++E A+ N A N++ N + ++ Sbjct: 315 VIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDAKRNAALNNMTNAEFGVGEAEVVIPK 374 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330 +E + D T+ VDPPR G D+A + ++ P ++Y+SCNP +L R Sbjct: 375 WYKE---GVIAD---------TMVVDPPRKGCDEALLSTIIDMKPKRVVYVSCNPATLAR 422 Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMEC 358 DL +L + + + D FP+T H+EC Sbjct: 423 DLKVLEEGGYKTQEVQPVDMFPHTTHVEC 451 >gi|283796109|ref|ZP_06345262.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium sp. M62/1] gi|291076323|gb|EFE13687.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium sp. M62/1] Length = 560 Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 68/252 (26%), Positives = 112/252 (44%), Gaps = 29/252 (11%) Query: 129 DAWRECAIRLR------DALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182 + WRE + L LH + + + T+I +DY E L L +R Sbjct: 241 NQWREKILSLSLEGTLAGILHTKNDTLADAVKDEGTEILFGQDYFYEELL----GLKFRI 296 Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFSLVLARHFDRVLAVEIAK 241 SF Q N+ + E G+ G ++ +LY G G + +LA +V+ VEI + Sbjct: 297 SPFSFFQTNSLGAEVLYEKTREYVGGVDGKVVFDLYSGTGTIAQILAPVAQKVVGVEIVE 356 Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301 +VEA+R N N ++N + + + LK + + + I +DPPR Sbjct: 357 EAVEASRVNAERNGLSNCEFIAG---------------DVLKVVGELTDKPDLIVLDPPR 401 Query: 302 SGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMEC 358 G+ + + + ++Y+SC P SL RDL IL+ + +ER D FP T ++E Sbjct: 402 DGIHPKAIEKIIDFGVERMVYVSCKPTSLARDLEILTARGYAVERACCVDMFPGTGNVET 461 Query: 359 GVLLVRKPSGWH 370 VLL + + H Sbjct: 462 VVLLSKLNTKQH 473 >gi|254224762|ref|ZP_04918378.1| TrmA family RNA methyltransferase, putative [Vibrio cholerae V51] gi|125622825|gb|EAZ51143.1| TrmA family RNA methyltransferase, putative [Vibrio cholerae V51] Length = 377 Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 53/184 (28%), Positives = 86/184 (46%), Gaps = 19/184 (10%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 SF Q N + + A + I + +L+CG G F+L A V +EI + Sbjct: 208 KSFFQTNPKVAEQLYATARAWVREIAPTQMWDLFCGVGGFALHCAAPDTAVTGIEIEPEA 267 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 + +A+ + ++N+ + S +F+Q+ E + V+PPR G Sbjct: 268 IASAQRSAQMMGIDNLSFAALDSAKFSQSQMSAPEL---------------VLVNPPRRG 312 Query: 304 LDDATVGMVQAYP--HILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVL 361 L ++A HILY SCNP ++ +D++ L++ I R+ FD FP+T H E L Sbjct: 313 LGSELTAQLEALAPKHILYSSCNPQTMVKDIAELASYQMI-RVQWFDMFPHTDHAEVLTL 371 Query: 362 LVRK 365 LVRK Sbjct: 372 LVRK 375 >gi|149910150|ref|ZP_01898796.1| RNA methyltransferase, TrmA family [Moritella sp. PE36] gi|149806736|gb|EDM66700.1| RNA methyltransferase, TrmA family [Moritella sp. PE36] Length = 444 Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 58/185 (31%), Positives = 90/185 (48%), Gaps = 19/185 (10%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 +F Q N +N M++ + + D +L+L+CG GNFSL LAR V+ VE Sbjct: 273 GNFIQVNPVVNNQMVKQAIDWLELTPEDRVLDLFCGGGNFSLPLARLCHSVVGVEGVDGM 332 Query: 244 VEAARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302 V A+ N AN+V N + + S +F++ + F++ + +DP R+ Sbjct: 333 VRQAQANAIANNVTNAQFYQADLSSDFSKLPWAKTSFDK-------------VLLDPARA 379 Query: 303 GLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTH-TIERLALFDQFPYTRHMECG 359 G + TV + I+Y+SCNP +L RD +L H + RL + D FP T H+E Sbjct: 380 GAAE-TVQYLHKLKVKRIVYVSCNPATLARDSKLLMEKHYKLTRLGMIDMFPQTGHVESM 438 Query: 360 VLLVR 364 L R Sbjct: 439 ALFER 443 >gi|228925576|ref|ZP_04088665.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228834054|gb|EEM79602.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 465 Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 47/149 (31%), Positives = 78/149 (52%), Gaps = 15/149 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G+ SL LA+ +V VEI ++E A+ N A N++ N + ++ Sbjct: 322 VIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDAKRNAALNNMTNAEFGVGEAEVVIPK 381 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330 +E + D T+ VDPPR G D+A + ++ P ++Y+SCNP +L R Sbjct: 382 WYKE---GVIAD---------TMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLAR 429 Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMEC 358 DL +L + + + D FP+T H+EC Sbjct: 430 DLKVLEEGGYKTQEVQPVDMFPHTTHVEC 458 >gi|229137158|ref|ZP_04265777.1| Uncharacterized RNA methyltransferase [Bacillus cereus BDRD-ST26] gi|228646330|gb|EEL02545.1| Uncharacterized RNA methyltransferase [Bacillus cereus BDRD-ST26] Length = 459 Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 47/149 (31%), Positives = 78/149 (52%), Gaps = 15/149 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G+ SL LA+ +V VEI ++E A+ N A N++ N + ++ Sbjct: 315 VIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDAKRNAALNNMTNAEFGVGEAEVVIPK 374 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330 +E + D T+ VDPPR G D+A + ++ P ++Y+SCNP +L R Sbjct: 375 WYKE---GVIAD---------TMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLAR 422 Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMEC 358 DL +L + + + D FP+T H+EC Sbjct: 423 DLKVLEEGGYKTQEVQPVDMFPHTTHVEC 451 >gi|229194707|ref|ZP_04321500.1| Uncharacterized RNA methyltransferase [Bacillus cereus m1293] gi|228588810|gb|EEK46835.1| Uncharacterized RNA methyltransferase [Bacillus cereus m1293] Length = 458 Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 47/149 (31%), Positives = 78/149 (52%), Gaps = 15/149 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G+ SL LA+ +V VEI ++E A+ N A N++ N + ++ Sbjct: 315 VIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDAKRNAALNNMTNAEFGVGEAEVVIPK 374 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330 +E + D T+ VDPPR G D+A + ++ P ++Y+SCNP +L R Sbjct: 375 WYKE---GVIAD---------TMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLAR 422 Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMEC 358 DL +L + + + D FP+T H+EC Sbjct: 423 DLKVLEEGGYKTQEVQPVDMFPHTTHVEC 451 >gi|196040233|ref|ZP_03107535.1| RNA methyltransferase, TrmA family [Bacillus cereus NVH0597-99] gi|196029088|gb|EDX67693.1| RNA methyltransferase, TrmA family [Bacillus cereus NVH0597-99] Length = 458 Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 47/149 (31%), Positives = 78/149 (52%), Gaps = 15/149 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G+ SL LA+ +V VEI ++E A+ N A N++ N + ++ Sbjct: 315 VIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDAKRNAALNNMTNAEFGVGEAEVVIPK 374 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330 +E + D T+ VDPPR G D+A + ++ P ++Y+SCNP +L R Sbjct: 375 WYKE---GVIAD---------TMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLAR 422 Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMEC 358 DL +L + + + D FP+T H+EC Sbjct: 423 DLKVLEEGGYKTQEVQPVDMFPHTTHVEC 451 >gi|164686694|ref|ZP_02210722.1| hypothetical protein CLOBAR_00289 [Clostridium bartlettii DSM 16795] gi|164604084|gb|EDQ97549.1| hypothetical protein CLOBAR_00289 [Clostridium bartlettii DSM 16795] Length = 466 Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 46/156 (29%), Positives = 80/156 (51%), Gaps = 15/156 (9%) Query: 205 ATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRM 264 A G + ++YCG G SL LA+ +V +EI + +++ A+ N N+++NV+ Sbjct: 314 ANLGENDTVFDIYCGIGTISLFLAQKAKKVYGIEIVEDAIKDAKRNAKINNMDNVEFYVG 373 Query: 265 SSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYIS 322 ++E M +E + R + VDPPR G D+ + +V P ++Y+S Sbjct: 374 KAEEVVPKMYKEGK------------RANVVVVDPPRKGCDEKVLDTIVSMEPDRVVYVS 421 Query: 323 CNPDSLCRDLSILST-THTIERLALFDQFPYTRHME 357 CNP +L RDL+ L+ + + D FP++ H+E Sbjct: 422 CNPSTLARDLAYLNERGYKCHEIQPVDMFPHSVHVE 457 >gi|326563434|gb|EGE13699.1| 23S rRNA 5-methyluridine methyltransferase [Moraxella catarrhalis 12P80B1] Length = 497 Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 80/298 (26%), Positives = 136/298 (45%), Gaps = 42/298 (14%) Query: 83 INALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH-RLLDDAWRECAIRLRDA 141 + AL+ ++ A + P L + Q S +++ ++ H + LDD E +LR Sbjct: 209 LKALITDLNARDSI-PQLEIAMGQTLPHVPDSIKSVAVIVRHMQELDD---EDLAKLRQF 264 Query: 142 LHARKYQIQLIGRANKTKICLD-RDYVDERLTVAGRTLIYRQIEN----------SFTQP 190 AR +Q+ L + + +D D LTV ++ + N FTQ Sbjct: 265 FAARNWQLFLQPKGADSVHRIDTEDARPTSLTVPPTGGLFYHLPNFELTYEFSPLDFTQV 324 Query: 191 NAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDR---VLAVEIAKPSVEA 246 N +N M++ + +G+ +L+L+CG GNFSLVLAR V+ VE ++ E Sbjct: 325 NLSVNQKMMDLASSLLNLQKGERVLDLFCGLGNFSLVLARQVGESGFVVGVEGSEQMTER 384 Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306 A+ N AN + + + +K+ TQ + + + RF + +DPPRSG + Sbjct: 385 AKMNACANGIAHTEFY---AKDLTQDLSDQ-------PWATGNNRFDALLIDPPRSGAWE 434 Query: 307 ATVGMVQAY------PHILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHME 357 V AY I+Y+SCNP +L RD +++ + + + D F +T H+E Sbjct: 435 -----VMAYLPKFNAKRIVYVSCNPVTLARDTKALIEAGYRLTHAGVMDMFSHTGHVE 487 >gi|224476953|ref|YP_002634559.1| putative RNA methyltransferase [Staphylococcus carnosus subsp. carnosus TM300] gi|222421560|emb|CAL28374.1| putative RNA methyltransferase [Staphylococcus carnosus subsp. carnosus TM300] Length = 453 Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 59/219 (26%), Positives = 101/219 (46%), Gaps = 23/219 (10%) Query: 151 LIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ 210 ++GR +KT +D +++ L ++ ++ + SF Q N+ V + L + + Sbjct: 254 IMGRHSKT--LFGKDEIEDDLD----SVEFKISDQSFYQINSEQTVKLYNKALEYAQ-LN 306 Query: 211 GD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268 GD +L+ YCG G L +A V VE+ ++E A+ N N NN V ++E Sbjct: 307 GDETVLDTYCGIGTIGLYMAEKAKHVYGVEVVPAAIEDAKQNAELNSFNNTTFVCGKAEE 366 Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPD 326 + + + + VDPPR G D+ + +++ P I+YISCNP Sbjct: 367 VIMQWKAD------------GIQPDVVMVDPPRKGCDEQFLKTLLELNPKRIVYISCNPS 414 Query: 327 SLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 + RD IL+ + ++ + D FP T H+E L K Sbjct: 415 TQQRDAGILTEQYQLKEITPVDMFPQTTHIETVALFEHK 453 >gi|195614602|gb|ACG29131.1| hypothetical protein [Zea mays] Length = 558 Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 64/215 (29%), Positives = 95/215 (44%), Gaps = 34/215 (15%) Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD----LLELYCGNG 221 Y +T R L ++ NSF Q N +L ++ + G++GD +L+L+CG G Sbjct: 357 YGKPNITEMLRGLAFQISANSFFQTNTK-QADVLYKLIEDSAGLKGDGSEIVLDLFCGTG 415 Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281 L LAR + E+ ++E AR N N +NN V+ + ++ +E Sbjct: 416 TIGLTLARRAKHIYGYEVVPEAIEDARKNAKLNGINNATFVQGDLNKINESFGKE----- 470 Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGM---VQAYPHILYISCNPDSLCRDLSILSTT 338 DI I DP R G+ + V+A P I+Y+SCNP + RDL L Sbjct: 471 FPKPDI-------IISDPNRPGMHMKLIKWLLEVKA-PRIVYVSCNPATCARDLDYLC-- 520 Query: 339 HTIERLAL-----------FDQFPYTRHMECGVLL 362 H +E L D FP+T H+EC LL Sbjct: 521 HGVEEKDLRGFYELKSVIPVDMFPHTPHIECVCLL 555 >gi|153212411|ref|ZP_01948193.1| TrmA family RNA methyltransferase, putative [Vibrio cholerae 1587] gi|124116619|gb|EAY35439.1| TrmA family RNA methyltransferase, putative [Vibrio cholerae 1587] Length = 375 Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 47/155 (30%), Positives = 77/155 (49%), Gaps = 18/155 (11%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + +L+CG G F+L A V +EI ++ +A+ + ++N+ + S +F+Q+ Sbjct: 237 MWDLFCGVGGFALHCAAPNTAVTGIEIEPEAIASAQRSAQMMGIDNLNFAALDSAKFSQS 296 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCR 330 E + V+PPR GL ++A HILY SCNP ++ + Sbjct: 297 QMSAPEL---------------VLVNPPRRGLGSELTAQLEALAPKHILYSSCNPQTMVK 341 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 D++ L++ I R+ FD FP+T H E LLVRK Sbjct: 342 DIAELASYQMI-RVQWFDMFPHTDHAEVLTLLVRK 375 >gi|229826831|ref|ZP_04452900.1| hypothetical protein GCWU000182_02210 [Abiotrophia defectiva ATCC 49176] gi|229788986|gb|EEP25100.1| hypothetical protein GCWU000182_02210 [Abiotrophia defectiva ATCC 49176] Length = 467 Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 66/229 (28%), Positives = 99/229 (43%), Gaps = 38/229 (16%) Query: 158 TKICLDRD-------YVDERLTVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWV 202 T IC++ + + DE + G I IE+ SF Q N + Sbjct: 254 TSICVNINKKITNVIFGDELKCIYGEPYIVDMIEDIKFKISPFSFYQVNPAQTRKLYGKA 313 Query: 203 LAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK 260 L G+ G+ + +LYCG G SL LA+ V VEI +VE A+ N N + N Sbjct: 314 LEFA-GLTGEEVVWDLYCGIGTISLFLAKKAKEVYGVEIVPAAVENAKENAKLNGIENA- 371 Query: 261 IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HI 318 + + E E +L D+ I VDPPR G D+ + + Y + Sbjct: 372 --------YFTVGKAEDEAKKLPKPDV-------IVVDPPRKGCDEKLLETIMNYKPERV 416 Query: 319 LYISCNPDSLCRDLSILS--TTHTIERLALFDQFPYTRHMECGVLLVRK 365 +Y+SC+P +L RDL +L + +E + DQF H+E L+ RK Sbjct: 417 VYVSCDPATLARDLKVLCGDGGYKLEEVQAVDQFSRGVHVESVCLMTRK 465 >gi|228906231|ref|ZP_04070118.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis IBL 200] gi|228853387|gb|EEM98157.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis IBL 200] Length = 459 Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 83/382 (21%), Positives = 166/382 (43%), Gaps = 44/382 (11%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQ------IFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63 Y++QL +K D + Q + +++ + P HYR +++ + + + ++ Sbjct: 96 YKEQLNQKRDIVVQAFEKYMKNSMEEKIRPTLGMENPWHYRNKSQLQVGRKDEKVITGLY 155 Query: 64 DQQTKERMRIDYFM-------PGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTS-QSD 115 Q + + + I + M + ++ ++ ++ +I E + + I T+ Q+ Sbjct: 156 KQNSHQLIDIAHCMIQHKATNEATKVVRRILEKLNVSIYNEKKQKGLVRTIVTRTAVQTG 215 Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175 + VTLI + + ++ + A K +Q + + I + D+ +AG Sbjct: 216 EVQVTLITTKEELPNKEQFIAEVQKQMPAVKSIMQNVNWRKTSVI-----FGDKTFKLAG 270 Query: 176 RTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSL 225 + +I + + +F Q N V + + A + G+ +++ YCG G L Sbjct: 271 KEVIQETLGDLSFELSARAFFQLNPEQTVVLYDEAKKAA-ALTGNEKIVDAYCGVGTIGL 329 Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285 LA V +++ ++ AR N + N K ++++ +E Sbjct: 330 WLANDAAEVRGMDVIPEAIADARKNAKRHGFTNTKYEAGKAEQWLPKWVKE--------- 380 Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMV-QAYP-HILYISCNPDSLCRDLSILSTTHTIER 343 +R I VDPPR+G DD + + + P ++Y+SCNP SL RD+ L ++ +E Sbjct: 381 ---GWRPDVIVVDPPRTGCDDKLLETILKVKPKQVVYVSCNPSSLARDVQALMKSYEVEY 437 Query: 344 LALFDQFPYTRHMECGVLLVRK 365 + D FP+T H+E V LVRK Sbjct: 438 VQPVDMFPHTAHVENVVKLVRK 459 >gi|152974152|ref|YP_001373669.1| RNA methyltransferase [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152022904|gb|ABS20674.1| RNA methyltransferase, TrmA family [Bacillus cytotoxicus NVH 391-98] Length = 458 Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 50/149 (33%), Positives = 77/149 (51%), Gaps = 15/149 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G+ SL LA+ +V VEI ++E A+ N N+ M++ EF Sbjct: 315 VIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDAKRNAELNN--------MTNAEFAVG 366 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330 N K+ I TI VDPPR G D+A + ++ P ++Y+SCNP +L R Sbjct: 367 EAEVVIPNWYKEGVIAD----TIVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLAR 422 Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMEC 358 DL +L + + + D FP+T H+EC Sbjct: 423 DLKVLEEGGYKTQEVQPVDMFPHTTHVEC 451 >gi|324324344|gb|ADY19604.1| RNA methyltransferase, TrmA family protein [Bacillus thuringiensis serovar finitimus YBT-020] Length = 459 Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 47/149 (31%), Positives = 78/149 (52%), Gaps = 15/149 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G+ SL LA+ +V VEI ++E A+ N A N++ N + ++ Sbjct: 315 VIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDAKRNAALNNMTNAEFGVGEAEVVIPK 374 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330 +E + D T+ VDPPR G D+A + ++ P ++Y+SCNP +L R Sbjct: 375 WYKE---GVIAD---------TMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLAR 422 Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMEC 358 DL +L + + + D FP+T H+EC Sbjct: 423 DLKVLEEGGYKTQEVQPVDMFPHTTHVEC 451 >gi|168178950|ref|ZP_02613614.1| 23S rRNA -methyltransferase RumA [Clostridium botulinum NCTC 2916] gi|182670032|gb|EDT82008.1| 23S rRNA -methyltransferase RumA [Clostridium botulinum NCTC 2916] Length = 461 Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 46/155 (29%), Positives = 77/155 (49%), Gaps = 15/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + + YCG G SL L++ +V VEI K +++ A+ N N ++N + S+E Sbjct: 316 VFDAYCGTGTISLFLSQKAKKVYGVEIIKEAIDNAKDNAKENRIDNAEFFVGKSEEV--- 372 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330 + D+ + + + VDPPR G + + + A I+Y+SC+P +L R Sbjct: 373 ---------IPDLIDKGIKAEVVVVDPPRKGCEKTLLEAIAATKPKRIVYVSCDPGTLAR 423 Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364 DL IL+ + + + D FP T H+E VL+ R Sbjct: 424 DLGILNGLGYETKEVQPVDMFPQTSHVETIVLIQR 458 >gi|52144916|ref|YP_081914.1| RNA methyltransferase [Bacillus cereus E33L] gi|51978385|gb|AAU19935.1| RNA methyltransferase protein, trmA family (tRNA (uracil-5-)-methyltransferase) [Bacillus cereus E33L] Length = 458 Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 47/149 (31%), Positives = 78/149 (52%), Gaps = 15/149 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G+ SL LA+ +V VEI ++E A+ N A N++ N + ++ Sbjct: 315 VIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDAKRNAALNNMTNAEFGVGEAEVVIPK 374 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330 +E + D T+ VDPPR G D+A + ++ P ++Y+SCNP +L R Sbjct: 375 WYKE---GVIAD---------TMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLAR 422 Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMEC 358 DL +L + + + D FP+T H+EC Sbjct: 423 DLKVLEEGGYKTQEVQPVDMFPHTTHVEC 451 >gi|312144153|ref|YP_003995599.1| RNA methyltransferase, TrmA family [Halanaerobium sp. 'sapolanicus'] gi|311904804|gb|ADQ15245.1| RNA methyltransferase, TrmA family [Halanaerobium sp. 'sapolanicus'] Length = 456 Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 48/160 (30%), Positives = 81/160 (50%), Gaps = 18/160 (11%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVR-MSSKEFTQ 271 +++ + G G+ +L +A ++V AVE KP+V+ + N A N + N+K + + E + Sbjct: 309 IVDAFSGTGSIALYIAEKAEKVFAVESLKPAVKDGKRNAALNKIKNIKFINGLVEDELAK 368 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLC 329 + E+ ID +I DPPR GL + T+ ++ ++YISCNP + Sbjct: 369 ILAEEK-------ID-------SIIFDPPRKGLAEKTIDLLNNLEIEKVIYISCNPATQA 414 Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLL-VRKPSG 368 RDL L + + + D FP T H+E LL ++ SG Sbjct: 415 RDLKKLKGKYRLIEIQGVDMFPNTYHIESVALLKLKNKSG 454 >gi|196045238|ref|ZP_03112470.1| RNA methyltransferase, TrmA family [Bacillus cereus 03BB108] gi|225862370|ref|YP_002747748.1| RNA methyltransferase, TrmA family [Bacillus cereus 03BB102] gi|196023822|gb|EDX62497.1| RNA methyltransferase, TrmA family [Bacillus cereus 03BB108] gi|225789520|gb|ACO29737.1| RNA methyltransferase, TrmA family [Bacillus cereus 03BB102] Length = 458 Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 47/149 (31%), Positives = 78/149 (52%), Gaps = 15/149 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G+ SL LA+ +V VEI ++E A+ N A N++ N + ++ Sbjct: 315 VIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDAKRNAALNNMTNAEFGVGEAEVVIPK 374 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330 +E + D T+ VDPPR G D+A + ++ P ++Y+SCNP +L R Sbjct: 375 WYKE---GVIAD---------TMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLAR 422 Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMEC 358 DL +L + + + D FP+T H+EC Sbjct: 423 DLKVLEEGGYKTQEVQPVDMFPHTTHVEC 451 >gi|116627288|ref|YP_819907.1| tRNA methyltransferase, TrmA family [Streptococcus thermophilus LMD-9] gi|116100565|gb|ABJ65711.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus thermophilus LMD-9] Length = 439 Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 85/388 (21%), Positives = 158/388 (40%), Gaps = 56/388 (14%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPNLQIFR-------SEPIHYRMRAEFHIWHDGDDLYHI 61 +Y++QL K D L Q + F+ N + + +P HYR + +F I G + Sbjct: 73 RYDKQLEFKTDLLGQALKKFKPANFESYEIRPTIGMKQPQHYRAKLQFQIRSFGGSVKAG 132 Query: 62 MFDQQTKERMRIDYFMPGSLLINALM-------------------IEMMATIRLEPLLRA 102 +F + + + ID + L A+M I + T+ + L + Sbjct: 133 LFAEGSHRLINIDDCLVQDELTQAIMNKVTNLLDKYKLPIYNERKISGIRTVMIRRALGS 192 Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162 Q+ ++TS + ++ L+ L ++ E + +++ +I +T+I Sbjct: 193 NQVQLIFVTS-NPVSLTKLVKELTL--SYPEIVTVAVNYNYSKSSEI----YGQETEIIW 245 Query: 163 DRDYVDERL---TVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCG 219 +D + E + A + Q+ T+ G V LE + L++ YCG Sbjct: 246 GQDTIQEEVLDYNFALSPRAFYQLNPKQTEVLYGQAVEALEVDKSE------HLIDAYCG 299 Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279 G L A+ + ++I ++E AR N + ++N +++ +E Sbjct: 300 VGTIGLAFAKKVSTIRGMDIIPEAIEDARKNAESLGLDNAHYEVGKAEDIIPRWYKE--- 356 Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILST 337 YR + VDPPR+GLD + + Y ++Y+SCN +L RDL L+ Sbjct: 357 ---------GYRADALIVDPPRTGLDSKLLKTILEYTPKKMVYVSCNVSTLARDLVSLAK 407 Query: 338 THTIERLALFDQFPYTRHMECGVLLVRK 365 + + + D FP+T E V L +K Sbjct: 408 VYDVNYIQSVDMFPHTARTEAVVKLTKK 435 >gi|238917477|ref|YP_002930994.1| hypothetical protein EUBELI_01555 [Eubacterium eligens ATCC 27750] gi|238872837|gb|ACR72547.1| Hypothetical protein EUBELI_01555 [Eubacterium eligens ATCC 27750] Length = 470 Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 67/220 (30%), Positives = 101/220 (45%), Gaps = 30/220 (13%) Query: 157 KTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNA-GINV---HMLEWVLAATKGIQGD 212 KT++ DY++E L L ++ SF Q N+ G V E+VL+ G D Sbjct: 270 KTELLYGHDYIEEELL----GLRFKITPFSFFQTNSLGAEVLYSKAREYVLSGGFGDVAD 325 Query: 213 ----LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268 + +LY G G + +L+ +V+ VEI +VEAA+ N A N + N + + Sbjct: 326 SKPVIYDLYTGTGTIAQMLSPVASKVIGVEIVAEAVEAAKKNAAQNGLTNCEFIAD---- 381 Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPD 326 + LK +D + I +DPPR G+ + + Y ++YISC P Sbjct: 382 -----------DVLKALDNIEIKPDFIVLDPPRDGIHPKALEKIIDYGVDRMVYISCKPT 430 Query: 327 SLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVRK 365 SL RDL L + +E+ D FP T H+E LL RK Sbjct: 431 SLARDLVTLQERGYKVEKCCCVDMFPNTGHVESVCLLSRK 470 >gi|204928019|ref|ZP_03219219.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|204322341|gb|EDZ07538.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] Length = 431 Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 57/187 (30%), Positives = 89/187 (47%), Gaps = 27/187 (14%) Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 F Q N +N M LEW+ + +L+L+CG GNF+L LA V+ VE Sbjct: 262 FIQVNEVVNQQMVARALEWLDVRA---EDRVLDLFCGMGNFTLPLATRAASVVGVEGVPA 318 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDP 299 VE R N N ++NV + +E D+ + F + +DP Sbjct: 319 LVEKGRENAIRNGLHNVTFFHENLEE---------------DVTKQPWAKNGFDKVLLDP 363 Query: 300 PRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHME 357 R+G +++ P I+Y+SCNP +L RD ++++ + + RLA+ D FP+T H+E Sbjct: 364 ARAGATGVMQHIIKLKPIRIVYVSCNPATLARDSEALVNAGYEVTRLAMLDMFPHTGHLE 423 Query: 358 CGVLLVR 364 VL R Sbjct: 424 SMVLFER 430 >gi|206974173|ref|ZP_03235090.1| RNA methyltransferase, TrmA family [Bacillus cereus H3081.97] gi|217957891|ref|YP_002336435.1| RNA methyltransferase, TrmA family [Bacillus cereus AH187] gi|222094090|ref|YP_002528147.1| RNA methyltransferase protein, trma family (tRNA (uracil-5-)-methyltransferase) [Bacillus cereus Q1] gi|206747413|gb|EDZ58803.1| RNA methyltransferase, TrmA family [Bacillus cereus H3081.97] gi|217063544|gb|ACJ77794.1| RNA methyltransferase, TrmA family [Bacillus cereus AH187] gi|221238145|gb|ACM10855.1| RNA methyltransferase protein, trmA family (tRNA (uracil-5-)-methyltransferase) [Bacillus cereus Q1] Length = 458 Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 47/149 (31%), Positives = 78/149 (52%), Gaps = 15/149 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G+ SL LA+ +V VEI ++E A+ N A N++ N + ++ Sbjct: 315 VIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDAKRNAALNNMTNAEFGVGEAEVVIPK 374 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330 +E + D T+ VDPPR G D+A + ++ P ++Y+SCNP +L R Sbjct: 375 WYKE---GVIAD---------TMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLAR 422 Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMEC 358 DL +L + + + D FP+T H+EC Sbjct: 423 DLKVLEEGGYKTQEVQPVDMFPHTTHVEC 451 >gi|228931823|ref|ZP_04094719.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228827803|gb|EEM73541.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 458 Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 47/149 (31%), Positives = 78/149 (52%), Gaps = 15/149 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G+ SL LA+ +V VEI ++E A+ N A N++ N + ++ Sbjct: 315 VIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDAKRNAALNNMTNAEFGVGEAEVVIPK 374 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330 +E + D T+ VDPPR G D+A + ++ P ++Y+SCNP +L R Sbjct: 375 WYKE---GVIAD---------TMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLAR 422 Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMEC 358 DL +L + + + D FP+T H+EC Sbjct: 423 DLKVLEEGGYKTQEVQPVDMFPHTTHVEC 451 >gi|168236003|ref|ZP_02661061.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194733918|ref|YP_002115909.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|194709420|gb|ACF88641.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197290826|gb|EDY30180.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] Length = 431 Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 57/187 (30%), Positives = 89/187 (47%), Gaps = 27/187 (14%) Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 F Q N +N M LEW+ + +L+L+CG GNF+L LA V+ VE Sbjct: 262 FIQVNEVVNQQMVARALEWLDVRA---EDRVLDLFCGMGNFTLPLATRAASVVGVEGVPA 318 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDP 299 VE R N N ++NV + +E D+ + F + +DP Sbjct: 319 LVEKGRENAIRNGLHNVTFFHENLEE---------------DVTKQPWAKNGFDKVLLDP 363 Query: 300 PRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHME 357 R+G +++ P I+Y+SCNP +L RD ++++ + + RLA+ D FP+T H+E Sbjct: 364 ARAGATGVMRHIIKLKPIRIVYVSCNPATLARDSEALVNAGYEVTRLAMLDMFPHTGHLE 423 Query: 358 CGVLLVR 364 VL R Sbjct: 424 SMVLFER 430 >gi|196034748|ref|ZP_03102156.1| RNA methyltransferase, TrmA family [Bacillus cereus W] gi|218901523|ref|YP_002449357.1| RNA methyltransferase, TrmA family [Bacillus cereus AH820] gi|228944128|ref|ZP_04106507.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|195992791|gb|EDX56751.1| RNA methyltransferase, TrmA family [Bacillus cereus W] gi|218536367|gb|ACK88765.1| RNA methyltransferase, TrmA family [Bacillus cereus AH820] gi|228815517|gb|EEM61759.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 458 Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 47/149 (31%), Positives = 78/149 (52%), Gaps = 15/149 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G+ SL LA+ +V VEI ++E A+ N A N++ N + ++ Sbjct: 315 VIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDAKRNAALNNMTNAEFGVGEAEVVIPK 374 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330 +E + D T+ VDPPR G D+A + ++ P ++Y+SCNP +L R Sbjct: 375 WYKE---GVIAD---------TMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLAR 422 Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMEC 358 DL +L + + + D FP+T H+EC Sbjct: 423 DLKVLEEGGYKTQEVQPVDMFPHTTHVEC 451 >gi|126701016|ref|YP_001089913.1| putative RNA methyltransferase [Clostridium difficile 630] gi|115252453|emb|CAJ70296.1| 23S rRNA (uracil-5-)-methyltransferase RumA (23S rRNA(M-5-U1939)-methyltransferase) [Clostridium difficile] Length = 454 Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 49/157 (31%), Positives = 81/157 (51%), Gaps = 17/157 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + ++YCG G SL LA+ +V +EI +++ A+ N N+++N + ++E Sbjct: 309 VFDIYCGIGTISLFLAQKAKKVYGIEIIDDAIKDAKINAKLNNIHNAEFYVGKAEEIVPK 368 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330 M RE + + + VDPPR G D+ + +V P I+Y+SCNP +L R Sbjct: 369 MYREGKTANV------------VVVDPPRKGCDEKVLETIVSMNPERIVYVSCNPSTLAR 416 Query: 331 DLSILSTTHTIERLAL--FDQFPYTRHMECGVLLVRK 365 DL L+ H + + D FP++ H+E VLL R+ Sbjct: 417 DLDYLN-VHGFKCVEAQPVDMFPHSTHVETCVLLQRR 452 >gi|55822353|ref|YP_140794.1| TrmA family tRNA methyltransferase [Streptococcus thermophilus CNRZ1066] gi|55738338|gb|AAV61979.1| tRNA methyltransferase, TrmA family [Streptococcus thermophilus CNRZ1066] Length = 454 Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 85/388 (21%), Positives = 158/388 (40%), Gaps = 56/388 (14%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPNLQIFR-------SEPIHYRMRAEFHIWHDGDDLYHI 61 +Y++QL K D L Q + F+ N + + +P HYR + +F I G + Sbjct: 88 RYDKQLEFKTDLLGQALKKFKPANFESYEIRPTIGMKQPQHYRAKLQFQIRSFGGSVKAG 147 Query: 62 MFDQQTKERMRIDYFMPGSLLINALM-------------------IEMMATIRLEPLLRA 102 +F + + + ID + L A+M I + T+ + L + Sbjct: 148 LFAEGSHRLINIDDCLVQDELTQAIMNKVTNLLDKYKLPIYNERKISGIRTVMIRRALGS 207 Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162 Q+ ++TS + ++ L+ L ++ E + +++ +I +T+I Sbjct: 208 NQVQLIFVTS-NPVSLTKLVKELTL--SYPEIVTVAVNYNYSKSSEIY----GQETEIIW 260 Query: 163 DRDYVDERL---TVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCG 219 +D + E + A + Q+ T+ G V LE + L++ YCG Sbjct: 261 GQDTIQEEVLDYNFALSPRAFYQLNPKQTEVLYGQAVEALEVDKSE------HLIDAYCG 314 Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279 G L A+ + ++I ++E AR N + ++N +++ +E Sbjct: 315 VGTIGLAFAKKVSTIRGMDIIPEAIEDARKNAESLGLDNAHYEVGKAEDIIPRWYKE--- 371 Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILST 337 YR + VDPPR+GLD + + Y ++Y+SCN +L RDL L+ Sbjct: 372 ---------GYRADALIVDPPRTGLDSKLLKTILKYTPKKMVYVSCNVSTLARDLVSLAK 422 Query: 338 THTIERLALFDQFPYTRHMECGVLLVRK 365 + + + D FP+T E V L +K Sbjct: 423 VYDVNYIQSVDMFPHTARTEAVVKLTKK 450 >gi|146295523|ref|YP_001179294.1| RNA methyltransferase [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145409099|gb|ABP66103.1| 23S rRNA m(5)U-1939 methyltransferase [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 452 Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 60/207 (28%), Positives = 101/207 (48%), Gaps = 24/207 (11%) Query: 168 DERLTVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYC 218 DE + + G + I +I N SF Q N+ + V+ + I +++ ++Y Sbjct: 252 DEDILIWGSSTIKDRIGNLTFEISPKSFFQVNSMQTEVLYSQVVKYLRNIDAEIVFDVYS 311 Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278 G G S+ +A +V +EI + +VE A+ + N ++N++ + R E E Sbjct: 312 GIGTISMFIAPFCKKVYTIEIVEDAVEDAKKSSKNNGISNIEFI---------CGRAEIE 362 Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL- 335 +L I + + +DPPRSG + + + P+I+Y+SCNP +L RD SIL Sbjct: 363 IPKLLKNGIIP---QAVILDPPRSGCEKELLESLIEHKIPNIIYVSCNPSTLARDSSILF 419 Query: 336 STTHTIERLALFDQFPYTRHMECGVLL 362 S + I + D FP T H+EC VL+ Sbjct: 420 SNGYEILEVQPVDMFPQTFHVECVVLM 446 >gi|49480082|ref|YP_034651.1| RNA methyltransferase [Bacillus thuringiensis serovar konkukian str. 97-27] gi|301052046|ref|YP_003790257.1| TrmA family RNA methyltransferase [Bacillus anthracis CI] gi|49331638|gb|AAT62284.1| RNA methyltransferase protein, trmA family (tRNA (uracil-5-)-methyltransferase, TrmA) [Bacillus thuringiensis serovar konkukian str. 97-27] gi|300374215|gb|ADK03119.1| RNA methyltransferase protein, trmA family [Bacillus cereus biovar anthracis str. CI] Length = 458 Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 47/149 (31%), Positives = 78/149 (52%), Gaps = 15/149 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G+ SL LA+ +V VEI ++E A+ N A N++ N + ++ Sbjct: 315 VIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDAKRNAALNNMTNAEFGVGEAEVVIPK 374 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330 +E + D T+ VDPPR G D+A + ++ P ++Y+SCNP +L R Sbjct: 375 WYKE---GVIAD---------TMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLAR 422 Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMEC 358 DL +L + + + D FP+T H+EC Sbjct: 423 DLKVLEEGGYKTQEVQPVDMFPHTTHVEC 451 >gi|167750213|ref|ZP_02422340.1| hypothetical protein EUBSIR_01187 [Eubacterium siraeum DSM 15702] gi|167656775|gb|EDS00905.1| hypothetical protein EUBSIR_01187 [Eubacterium siraeum DSM 15702] Length = 383 Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 55/190 (28%), Positives = 92/190 (48%), Gaps = 16/190 (8%) Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVE 238 +R +SF Q N + ++ + A K + D LL+ Y G G ++ + + +V +E Sbjct: 204 FRISPHSFYQINHAQTEKLYDYAIKAAKLTKKDVLLDAYSGIGTIGIIASDYVKQVQGIE 263 Query: 239 IAKPSVEAARYNIAANHVN-NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFV 297 +V A N N + N+ R + EF + + + H + + + Sbjct: 264 YNASAVRDAVKNCHENGLTRNIAFNRGDAGEFLEKKAK---------LGTH---YDAVIL 311 Query: 298 DPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRH 355 DP R+G D + +V+ P I+YISCNP + RDL L+ +T+ + FD FP+TRH Sbjct: 312 DPARTGADRKFLNSLVKIAPERIVYISCNPATQARDLKTLTKKYTVTDIQPFDMFPHTRH 371 Query: 356 MECGVLLVRK 365 +EC V + RK Sbjct: 372 VECVVSMSRK 381 >gi|238925373|ref|YP_002938890.1| RNA methyltransferase [Eubacterium rectale ATCC 33656] gi|238877049|gb|ACR76756.1| RNA methyltransferase [Eubacterium rectale ATCC 33656] Length = 418 Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 41/148 (27%), Positives = 80/148 (54%), Gaps = 15/148 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G ++ A++ V+ VE+ + ++ A N N + N++ + +F Sbjct: 273 IIDAYCGTGTIGIIAAKNAGEVIGVELNRDAIRDAVINAKRNDIRNIRFYNDDAGKFMVE 332 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330 M ++ E + + +DPPR+G D+A + +V+ P ++Y+SC P++L R Sbjct: 333 MAQKGE------------KADVVIMDPPRTGSDEAFLSSVVKLSPERVVYVSCGPETLAR 380 Query: 331 DLSILST-THTIERLALFDQFPYTRHME 357 DL L+ +T++R +D FP+T H+E Sbjct: 381 DLKYLTKHGYTVKRATPYDCFPFTSHIE 408 >gi|255102596|ref|ZP_05331573.1| putative RNA methyltransferase [Clostridium difficile QCD-63q42] Length = 454 Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 49/157 (31%), Positives = 81/157 (51%), Gaps = 17/157 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + ++YCG G SL LA+ +V +EI +++ A+ N N+++N + ++E Sbjct: 309 VFDIYCGIGTISLFLAQKAKKVYGIEIIDDAIKDAKINAKLNNIHNAEFYVGKAEEIVPK 368 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330 M RE + + + VDPPR G D+ + +V P I+Y+SCNP +L R Sbjct: 369 MYREGKTANV------------VVVDPPRKGCDEKVLETIVSMNPERIVYVSCNPSTLAR 416 Query: 331 DLSILSTTHTIERLAL--FDQFPYTRHMECGVLLVRK 365 DL L+ H + + D FP++ H+E VLL R+ Sbjct: 417 DLDYLN-VHGFKCVEAQPVDMFPHSTHVETCVLLQRR 452 >gi|296111690|ref|YP_003622072.1| RNA methyltransferase [Leuconostoc kimchii IMSNU 11154] gi|295833222|gb|ADG41103.1| RNA methyltransferase [Leuconostoc kimchii IMSNU 11154] Length = 464 Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 101/396 (25%), Positives = 163/396 (41%), Gaps = 73/396 (18%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVP---NLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ 65 +Y+ QLA K ++ QM VP I ++P YR +A+ + Q Sbjct: 99 KYDAQLAFKQHQIEQMFKKVNVPVEVKPTIGMADPTKYRNKAQVPV-------------Q 145 Query: 66 QTKERMRIDYFMPGS--------LLINALMIEMMATIRLEPLLRAKLFQIDYLTSQ---- 113 R+ ++ GS I ++ T+ + L L D T++ Sbjct: 146 LINGRLETGFYRRGSHKLVPVEDFYIQDPKVDEAVTVTRDILRDLGLSAYDEETNKGVVR 205 Query: 114 ---------SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQ---------LIGRA 155 S + +V +I + +E A RL+ L K I ++G+ Sbjct: 206 HIMARRGYYSHELMVVIITNTKKLPEEQEIATRLQAKLPELKSFIHNINNHDTNVIMGQW 265 Query: 156 NKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATK-GIQ--GD 212 N+T D + ++L G+ + NSF Q N + + LAA K G++ Sbjct: 266 NET--VWGEDEIHDQLM--GKDFVIG--PNSFYQVNPQTTATL--YTLAAEKAGLKKTDT 317 Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ Y G G +L +A ++ VE+ + +VE A N NH++NV EF A Sbjct: 318 VVDAYSGIGTITLSIADKVKKIYGVEVVENAVEDAEKNAKNNHIDNV--------EFVTA 369 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY-PH-ILYISCNPDSLCR 330 E+ +D + +FVDPPR GL + V A P +YISCNP +L R Sbjct: 370 DAPEQMVKWAED----GLKPNVVFVDPPRKGLTSELISAVSAMKPETFVYISCNPATLAR 425 Query: 331 D-LSILSTTHTIE-RLALFDQFPYTRHMECGVLLVR 364 D + IL+ I+ + DQFP T H+E + R Sbjct: 426 DAVQILAEGFEIDGAVQPLDQFPQTTHVESVTVFKR 461 >gi|51245295|ref|YP_065179.1| RNA-methyltransferase [Desulfotalea psychrophila LSv54] gi|50876332|emb|CAG36172.1| related to RNA-methyltransferase [Desulfotalea psychrophila LSv54] Length = 444 Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 61/208 (29%), Positives = 97/208 (46%), Gaps = 17/208 (8%) Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220 L DY + L AG+ + + N F Q N NV M+E VLA A + +L+L+CG Sbjct: 250 LSLDYKPQAL--AGKKISMQWEVNGFCQVNIKQNVQMIETVLAFADIRDEESVLDLFCGM 307 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 GNFS+ LA V E ++ +A+ N N ++N + + + ++ Sbjct: 308 GNFSIPLACQAKAVTGFEGQGSAIRSAKKNALNNGLDNCSFYQKPVHKACAELIADKRV- 366 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSILSTTH 339 + + +DPPR G + + + ++YISC+P +L RDL+ LS Sbjct: 367 -----------YDCVIIDPPRQGAPELAGQLAKLCQKRLIYISCDPATLTRDLAELSKQG 415 Query: 340 -TIERLALFDQFPYTRHMECGVLLVRKP 366 I+++ D FP T H+E VLL P Sbjct: 416 FQIKKIQPIDMFPQTYHIENVVLLEPCP 443 >gi|14590965|ref|NP_143040.1| RNA methyltransferase [Pyrococcus horikoshii OT3] gi|50401321|sp|O58864|Y1137_PYRHO RecName: Full=Uncharacterized RNA methyltransferase PH1137 gi|3257554|dbj|BAA30237.1| 407aa long hypothetical RNA methyltransferase [Pyrococcus horikoshii OT3] Length = 407 Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 60/196 (30%), Positives = 97/196 (49%), Gaps = 29/196 (14%) Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNF 223 R+++ E+L +IY NSF Q N+ V++++ V +G + +L++Y G G F Sbjct: 232 REFITEKLD----DVIYLIHPNSFFQTNSYQAVNLVKKVSELVEGER--VLDMYSGVGTF 285 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 + LA+ +V+ + + ++E AR N N V+ V F A RE E N Sbjct: 286 GIYLAKRGFKVVGFDSNEFAIEMARKNAKINKVDAV---------FDVATDREVEVN--- 333 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYPH-ILYISCNPDSLCRDLSILSTTHTI 341 F T+ VDPPR GL + + + P I+Y+SCNP + RD+ L + I Sbjct: 334 -------GFDTVIVDPPRVGLHPKLIKKLNREKPEVIVYVSCNPKTFARDIEKLE--YKI 384 Query: 342 ERLALFDQFPYTRHME 357 + + D FP+T H+E Sbjct: 385 DEIVALDMFPHTPHLE 400 >gi|290476632|ref|YP_003469537.1| 23S rRNA m5U1939 methyltransferase [Xenorhabdus bovienii SS-2004] gi|289175970|emb|CBJ82773.1| 23S rRNA m5U1939 methyltransferase [Xenorhabdus bovienii SS-2004] Length = 450 Score = 80.1 bits (196), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 57/188 (30%), Positives = 85/188 (45%), Gaps = 25/188 (13%) Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 F Q N +N M+ LA D +L+L+CG GNF+L +A V+ VE V Sbjct: 276 FIQINDEVNQKMVVQALAWLDLQPTDRVLDLFCGMGNFTLPMATKAQTVVGVEGVAALVA 335 Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHS-----YRFKTIFVDPP 300 +YN N +NNV F+ + DIH F + +DP Sbjct: 336 NGQYNAQLNELNNVDF-----------------FHENLESDIHQQPWAVLGFNKVLLDPA 378 Query: 301 RSGLDDATVGMVQAYPH-ILYISCNPDSLCRDLSI-LSTTHTIERLALFDQFPYTRHMEC 358 R+G +V+ P ++Y+SCNP +L RD I L + + + + D FP+T H+E Sbjct: 379 RAGAAGVMSHIVKLAPERVVYVSCNPTTLARDSKILLEAGYHLVSVRMLDMFPHTGHLES 438 Query: 359 GVLLVRKP 366 L R+P Sbjct: 439 MALFSREP 446 >gi|49476818|ref|YP_034754.1| tRNA (uracil-5-)-methyltransferase [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52144821|ref|YP_082009.1| RNA methyltransferase [Bacillus cereus E33L] gi|196034722|ref|ZP_03102130.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus W] gi|196040108|ref|ZP_03107410.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus NVH0597-99] gi|218231359|ref|YP_002365269.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus B4264] gi|218901630|ref|YP_002449464.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus AH820] gi|228925680|ref|ZP_04088767.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228944240|ref|ZP_04106616.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228956903|ref|ZP_04118684.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis serovar pakistani str. T13001] gi|229120088|ref|ZP_04249340.1| Uncharacterized RNA methyltransferase [Bacillus cereus 95/8201] gi|229143212|ref|ZP_04271644.1| Uncharacterized RNA methyltransferase [Bacillus cereus BDRD-ST24] gi|296501251|ref|YP_003662951.1| tRNA(Uracil-5-)-methyltransferase [Bacillus thuringiensis BMB171] gi|300119050|ref|ZP_07056761.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus SJ1] gi|49328374|gb|AAT59020.1| tRNA (uracil-5-)-methyltransferase (RNA methyltransferase, TrmA family) [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51978290|gb|AAU19840.1| RNA methyltransferase, TrmA family [Bacillus cereus E33L] gi|195992765|gb|EDX56725.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus W] gi|196028963|gb|EDX67568.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus NVH0597-99] gi|218159316|gb|ACK59308.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus B4264] gi|218538073|gb|ACK90471.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus AH820] gi|228640293|gb|EEK96691.1| Uncharacterized RNA methyltransferase [Bacillus cereus BDRD-ST24] gi|228663326|gb|EEL18914.1| Uncharacterized RNA methyltransferase [Bacillus cereus 95/8201] gi|228802746|gb|EEM49582.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis serovar pakistani str. T13001] gi|228815391|gb|EEM61636.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228833955|gb|EEM79505.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|296322303|gb|ADH05231.1| tRNA(Uracil-5-)-methyltransferase [Bacillus thuringiensis BMB171] gi|298723666|gb|EFI64397.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus SJ1] Length = 459 Score = 80.1 bits (196), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 47/155 (30%), Positives = 77/155 (49%), Gaps = 14/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G L LA V +++ ++ AR N + N K ++++ Sbjct: 317 IVDAYCGVGTIGLWLANDAAEVRGMDVIPEAIADARKNAKRHGFTNTKYEAGKAEQWLPK 376 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCR 330 +E +R I VDPPR+G DD + +++ P ++Y+SCNP SL R Sbjct: 377 WVKE------------GWRPDVIVVDPPRTGCDDKLLETILKVKPKQVVYVSCNPSSLAR 424 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 D+ L ++ +E + D FP+T H+E V LVRK Sbjct: 425 DVQALMKSYEVEYVQPVDMFPHTAHVENVVKLVRK 459 >gi|145300354|ref|YP_001143195.1| 23S rRNA 5-methyluridine methyltransferase [Aeromonas salmonicida subsp. salmonicida A449] gi|189045732|sp|A4SRC5|RUMA_AERS4 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|142853126|gb|ABO91447.1| 23S rRNA (uracil-5-)-methyltransferase [Aeromonas salmonicida subsp. salmonicida A449] Length = 439 Score = 80.1 bits (196), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 55/176 (31%), Positives = 81/176 (46%), Gaps = 15/176 (8%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 F Q N IN M+ LA + D +L+L+CG GNF+L LAR V+ VE Sbjct: 269 GDFIQVNGPINQSMVAQALAWLGASKDDKVLDLFCGIGNFTLPLARQAREVVGVEGDLAM 328 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 V A N N ++N + + M RE F + +DP R G Sbjct: 329 VARAEENARRNGIDNARFYKADLSGDIVGMSWARE------------GFDLVLLDPARPG 376 Query: 304 LDDATVGMVQAYPH-ILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHME 357 + +V+ P ++Y+SCNP +L RD +L + + RL + D FP+T H+E Sbjct: 377 ALEVMGHVVKLSPKRVVYVSCNPVTLARDSQVLVKGGYRLVRLGMLDMFPHTGHLE 432 >gi|299135646|ref|ZP_07028830.1| (Uracil-5)-methyltransferase [Acidobacterium sp. MP5ACTX8] gi|298601770|gb|EFI57924.1| (Uracil-5)-methyltransferase [Acidobacterium sp. MP5ACTX8] Length = 433 Score = 80.1 bits (196), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 101/378 (26%), Positives = 170/378 (44%), Gaps = 45/378 (11%) Query: 9 QYEQQLAEKVDRLRQMMLAFQV---PNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ 65 +Y Q+ K D LR+ M V P + EP YR R F + + L+ + + Sbjct: 80 EYATQVEIKRDILRETMQRAGVNTLPEIASHTGEPWGYRNRVRFRLGKV-EGLFRVGYSV 138 Query: 66 QTKERMRIDYFMPGSLLINALMIEMMATIRL----EPLLRAKLF-----QIDYLTSQSDQ 116 + + F+P + A + A + L E + AKL+ ++++ + Sbjct: 139 RGT-----NAFLPITQCPIAAPLLWKAAVALLQLSENNIEAKLWLEAANEVEFFCNADLS 193 Query: 117 AI-VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175 + +TL+ R A + RL +AL ++ G + ++ E +AG Sbjct: 194 RLQMTLLCARA-KPAKKNSFARLCEALQQGVPELSGAGVLTGDARGGNTNFT-EGWGIAG 251 Query: 176 RTLIYRQIENSFTQPNAG---INVHMLEWVLA-ATKGIQGDLL-ELYCGNGNFSLVLARH 230 L YR + ++ G +N ++E +L G GD+ +L+ G G FS VLAR Sbjct: 252 --LAYRVADENYWVSRGGFFQVNRFLVEKLLPLVCVGRSGDIAWDLFAGVGLFSRVLARS 309 Query: 231 FDRVLAVEIAKPSVEAARYNIAANHVNNV-KIVRMSSKEFTQAMRREREFNRLKDIDIHS 289 F +V AVE A PS A I+ + + + V+ S+ EF + +RE Sbjct: 310 FAQVTAVE-ANPSA-ANDLRISLGKLGSQHRSVQASTLEFLRGAVVQRE----------- 356 Query: 290 YRFKTIFVDPPRSG--LDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALF 347 R I +DPPR+G ++ + + A P ++Y+SC+P +L RDL +L + I + L Sbjct: 357 -RPALIVLDPPRAGAGVEACELLLKLAAPAVVYVSCDPTTLARDLVVLQRDYRIAEIHLV 415 Query: 348 DQFPYTRHMECGVLLVRK 365 D FP T H+E V+L R+ Sbjct: 416 DLFPQTFHLETVVMLARR 433 >gi|261212969|ref|ZP_05927253.1| RNA methyltransferase TrmA family [Vibrio sp. RC341] gi|260838034|gb|EEX64711.1| RNA methyltransferase TrmA family [Vibrio sp. RC341] Length = 377 Score = 80.1 bits (196), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 53/184 (28%), Positives = 86/184 (46%), Gaps = 19/184 (10%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 SF Q N + + A + I + +L+CG G F+L A V +EI + Sbjct: 208 KSFFQTNPKVAEQLYATARAWVREIAPTQMWDLFCGVGGFALHCAAPDTVVTGIEIEPEA 267 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 + +A+ + ++N+ + S +F+Q+ E + V+PPR G Sbjct: 268 IASAQRSAQMMGIDNLSFAALDSAKFSQSQMSAPEL---------------VLVNPPRRG 312 Query: 304 LDDATVGMVQAYP--HILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVL 361 L ++A HILY SCNP ++ +D++ L++ I R+ FD FP+T H E L Sbjct: 313 LGSELTAQLEALAPKHILYSSCNPQTMVKDIAELASYQMI-RVQWFDMFPHTDHAEVLTL 371 Query: 362 LVRK 365 LVRK Sbjct: 372 LVRK 375 >gi|87124488|ref|ZP_01080337.1| hypothetical protein RS9917_12780 [Synechococcus sp. RS9917] gi|86168060|gb|EAQ69318.1| hypothetical protein RS9917_12780 [Synechococcus sp. RS9917] Length = 461 Score = 80.1 bits (196), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 55/171 (32%), Positives = 83/171 (48%), Gaps = 24/171 (14%) Query: 200 EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259 +W+L+ I +++ YCG G +L LA VL +E+ + SVE AR N N + V Sbjct: 306 QWLLSQAGPIA--VIDAYCGIGTIALPLAAAGHSVLGLEVHQASVEQARRNAEHNGLTGV 363 Query: 260 KIVRMSSK-EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH- 317 + + +A+ + + + VDPPR GLD + + A P Sbjct: 364 CFLAGDVQHHLAEALPQH----------------QALVVDPPRKGLDPSVTEQILACPPR 407 Query: 318 -ILYISCNPDSLCRDLSILS---TTHTIERLALFDQFPYTRHMECGVLLVR 364 + Y+SC+P +L RDL+ L+ + I RL FD FP T H+EC LL R Sbjct: 408 WLAYLSCDPATLARDLARLAGPEAPYRIHRLQPFDFFPQTSHLECLALLER 458 >gi|229095127|ref|ZP_04226122.1| Uncharacterized RNA methyltransferase [Bacillus cereus Rock3-29] gi|229101229|ref|ZP_04231993.1| Uncharacterized RNA methyltransferase [Bacillus cereus Rock3-28] gi|229114081|ref|ZP_04243506.1| Uncharacterized RNA methyltransferase [Bacillus cereus Rock1-3] gi|228669351|gb|EEL24768.1| Uncharacterized RNA methyltransferase [Bacillus cereus Rock1-3] gi|228682197|gb|EEL36310.1| Uncharacterized RNA methyltransferase [Bacillus cereus Rock3-28] gi|228688312|gb|EEL42195.1| Uncharacterized RNA methyltransferase [Bacillus cereus Rock3-29] Length = 459 Score = 80.1 bits (196), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 85/383 (22%), Positives = 166/383 (43%), Gaps = 46/383 (12%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQ------IFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63 Y++QL +K D + Q + L+ + P HYR +++ + + + ++ Sbjct: 96 YKEQLNQKRDIVVQAFEKYMNNTLEEKIRPTLGMENPWHYRNKSQLQVGRKDEKVITGLY 155 Query: 64 DQQTKERMRIDYFM-------PGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTS-QSD 115 Q + + + I + M + ++ ++ ++ +I E + + I T+ Q+ Sbjct: 156 KQNSHQLIDIAHCMIQHKATNEATKVVRRILEKLNVSIYNEKKQKGLVRTIVTRTAVQTG 215 Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175 + VTLI + + ++ + A K +Q + + I + D+ +AG Sbjct: 216 EVQVTLITTKEELPNKEQFIAEVQKQMPAVKSIMQNVNWRKTSVI-----FGDKTFKLAG 270 Query: 176 RTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSL 225 + +I + + +F Q N V + + A + G+ +++ YCG G L Sbjct: 271 KEVIQETLGDLSFELSARAFFQLNPEQTVVLYDEAKKAA-ALTGNEKIVDAYCGVGTIGL 329 Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285 LA V +++ ++ AR N + N K ++++ +E Sbjct: 330 WLANDAAEVRGMDVIPEAIADARKNAKRHGFTNTKYEAGKAEQWLPKWVKE--------- 380 Query: 286 DIHSYRFKTIFVDPPRSGLDDA---TVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIE 342 +R I VDPPR+G DD T+ VQ ++Y+SCNP SL RD++ L ++ +E Sbjct: 381 ---GWRPDVIVVDPPRTGCDDKLLETILKVQPK-RVVYVSCNPSSLARDVNALMKSYEVE 436 Query: 343 RLALFDQFPYTRHMECGVLLVRK 365 + D FP+T H+E V LV+K Sbjct: 437 YVQPVDMFPHTAHVENVVRLVKK 459 >gi|53803775|ref|YP_114333.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Methylococcus capsulatus str. Bath] gi|90126220|sp|Q606W5|RUMA_METCA RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|53757536|gb|AAU91827.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Methylococcus capsulatus str. Bath] Length = 443 Score = 80.1 bits (196), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 78/269 (28%), Positives = 122/269 (45%), Gaps = 33/269 (12%) Query: 100 LRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLR--DALHARKYQIQLIGRANK 157 LR +L QI+ + A+V R+L+D E RL IQ GR + Sbjct: 190 LRERLPQIEAAVGEERTALV----FRVLEDPTAEDFARLARFGKDQGLDVYIQREGRDSV 245 Query: 158 TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLEL 216 + + + D ++ + +R FTQ N IN M++ V+ A + +L+L Sbjct: 246 APVYPETAH-DLSYSLPEWEVTFRFGPLDFTQVNMAINRQMIDQVMQALDPQPEERVLDL 304 Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI-VRMSSKEFTQAMRR 275 +CG GNF+L LAR V VE +V A N A N + NV+ V SK + Sbjct: 305 FCGLGNFTLPLARRAGHVTGVEGGAEAVARAIRNAADNGIGNVEFHVADLSKPESCGSWA 364 Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH-----ILYISCNPDSLCR 330 RE+++ + +DP RSG + ++Q P+ I+Y+SCNP +L R Sbjct: 365 GREYHK-------------VLLDPSRSG----ALEILQCVPNWKAGRIVYVSCNPSTLAR 407 Query: 331 DLSIL--STTHTIERLALFDQFPYTRHME 357 D IL + + + + D FP+T H+E Sbjct: 408 DAGILVHEYGYRLLKAGVMDMFPHTAHVE 436 >gi|229089548|ref|ZP_04220815.1| Uncharacterized RNA methyltransferase [Bacillus cereus Rock3-42] gi|228693764|gb|EEL47460.1| Uncharacterized RNA methyltransferase [Bacillus cereus Rock3-42] Length = 459 Score = 80.1 bits (196), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 47/155 (30%), Positives = 77/155 (49%), Gaps = 14/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G L LA V +++ ++ AR N + N K ++++ Sbjct: 317 IVDAYCGVGTIGLWLANDAAEVRGMDVIPEAIADARKNAKRHGFTNTKYEAGKAEQWLPK 376 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCR 330 +E +R I VDPPR+G DD + +++ P ++Y+SCNP SL R Sbjct: 377 WVKE------------GWRPDVIVVDPPRTGCDDKLLETILKVKPKQVVYVSCNPSSLAR 424 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 D+ L ++ +E + D FP+T H+E V LVRK Sbjct: 425 DVQALMKSYEVEYVQPVDMFPHTAHVENVVKLVRK 459 >gi|297568513|ref|YP_003689857.1| RNA methyltransferase, TrmA family [Desulfurivibrio alkaliphilus AHT2] gi|296924428|gb|ADH85238.1| RNA methyltransferase, TrmA family [Desulfurivibrio alkaliphilus AHT2] Length = 450 Score = 80.1 bits (196), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 58/200 (29%), Positives = 95/200 (47%), Gaps = 15/200 (7%) Query: 171 LTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFSLVLAR 229 +T AGRTL + F+Q N N +L ++ + +++ +L+CG GNFSL LA Sbjct: 259 VTPAGRTLELQFEPWGFSQVNEEQNRQLLTLLIELLQPAGHEIVADLHCGMGNFSLPLAL 318 Query: 230 HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHS 289 V V++ ++ A+ N AN +NN R+ L + Sbjct: 319 LVGEVHGVDLQAAAIRGAKRNAEANRLNNCHF------------RQAEAHQGLAALQAAG 366 Query: 290 YRFKTIFVDPPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALF 347 R + +DPPR+G + + P ++ ISC+P ++ RDL ++L+ + +E + L Sbjct: 367 IRPDVLLLDPPRAGCRELVATLEAPLPGKVVMISCDPATMTRDLAALLALNYQVETMRLV 426 Query: 348 DQFPYTRHMECGVLLVRKPS 367 D FP T H+E LL R S Sbjct: 427 DMFPQTHHLETITLLSRNNS 446 >gi|238750559|ref|ZP_04612059.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Yersinia rohdei ATCC 43380] gi|238711207|gb|EEQ03425.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Yersinia rohdei ATCC 43380] Length = 433 Score = 80.1 bits (196), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 59/207 (28%), Positives = 94/207 (45%), Gaps = 39/207 (18%) Query: 180 YRQIEN--------SFTQPNAGINVHM----LEWVLAATKGIQGD--LLELYCGNGNFSL 225 Y QIE F Q N +N M +EW+ +Q D +L+L+CG GNF+L Sbjct: 244 YYQIEGLRLAFHPRDFIQVNDAVNQQMVAQAIEWL-----DVQPDERVLDLFCGMGNFTL 298 Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285 LA+ V+ VE V +YN +N + NV N DI Sbjct: 299 PLAKLAREVVGVEGVAALVANGQYNARSNTLPNVSFFHE---------------NLESDI 343 Query: 286 DIHSYR---FKTIFVDPPRSGLDDATVGMVQAYPH-ILYISCNPDSLCRDLSI-LSTTHT 340 + F + +DP R+G +V+ P ++Y+SCNP +L RD + L+ + Sbjct: 344 SCQPWAAQGFDKVLLDPARAGASGVMSHIVKLAPKRVVYVSCNPTTLARDSQVLLAAGYR 403 Query: 341 IERLALFDQFPYTRHMECGVLLVRKPS 367 + ++ + D FP+T H+E L +++P Sbjct: 404 LAQVRMLDMFPHTGHLESMALFMQEPG 430 >gi|228931916|ref|ZP_04094810.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228827701|gb|EEM73441.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 459 Score = 80.1 bits (196), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 47/155 (30%), Positives = 77/155 (49%), Gaps = 14/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G L LA V +++ ++ AR N + N K ++++ Sbjct: 317 IVDAYCGVGTIGLWLANDAAEVRGMDVIPEAIADARKNAKRHGFTNTKYEAGKAEQWLPK 376 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCR 330 +E +R I VDPPR+G DD + +++ P ++Y+SCNP SL R Sbjct: 377 WVKE------------GWRPDVIVVDPPRTGCDDKLLETILKVKPKQVVYVSCNPSSLAR 424 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 D+ L ++ +E + D FP+T H+E V LVRK Sbjct: 425 DVQALMKSYEVEYVQPVDMFPHTAHVENVVKLVRK 459 >gi|291278654|ref|YP_003495489.1| tRNA (uracil-5-)-methyltransferase [Deferribacter desulfuricans SSM1] gi|290753356|dbj|BAI79733.1| tRNA (uracil-5-)-methyltransferase [Deferribacter desulfuricans SSM1] Length = 393 Score = 80.1 bits (196), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 56/182 (30%), Positives = 93/182 (51%), Gaps = 21/182 (11%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 +SF+Q N + E V++ +LELY G+G F+ +A+ VLA+E + ++ Sbjct: 230 DSFSQSNRFLLREFAEVVVSFVDE-NDSVLELYAGSGFFTHKVAKKAKAVLAIEENREAI 288 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 + +V NV I+ +++A +K IDI+ Y T+ VDPPR+GL Sbjct: 289 SLLK----KLNVENVDII------YSKA-------ENIKRIDINPYN--TLLVDPPRTGL 329 Query: 305 DDATVGMVQA-YPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363 + + + I+Y+SCNP ++ RD+ LS + +++ D FP T H+E LL Sbjct: 330 SKPVIDAISNRFEKIVYVSCNPSTMARDILRLSNNYDLKKYLFIDMFPNTYHIESIALLE 389 Query: 364 RK 365 RK Sbjct: 390 RK 391 >gi|237743303|ref|ZP_04573784.1| tRNA (Uracil-5-)-methyltransferase [Fusobacterium sp. 7_1] gi|229433082|gb|EEO43294.1| tRNA (Uracil-5-)-methyltransferase [Fusobacterium sp. 7_1] Length = 451 Score = 80.1 bits (196), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 42/156 (26%), Positives = 79/156 (50%), Gaps = 15/156 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ Y G G +++++ +V A+EI K + E N + N++ + + Sbjct: 308 IVDAYSGTGTIGMIMSKKAKKVYAIEIVKSASEDGEKTAKENGIENIEFINGAV------ 361 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCR 330 E+E +L + ++ + TI DP R GLD + + V ++YISCNP + R Sbjct: 362 ---EKELVKLIN---NNQKIDTIIFDPSRKGLDASIIDKVAELNLKEVVYISCNPSTFAR 415 Query: 331 DLSILSTT-HTIERLALFDQFPYTRHMECGVLLVRK 365 D+ + S + +++L D FP T H+EC L+V++ Sbjct: 416 DVKLFSEKGYVLKKLQAVDMFPQTSHIECVGLIVKE 451 >gi|169825906|ref|YP_001696064.1| putative RNA methyltransferase [Lysinibacillus sphaericus C3-41] gi|168990394|gb|ACA37934.1| Hypothetical RNA methyltransferase [Lysinibacillus sphaericus C3-41] Length = 462 Score = 80.1 bits (196), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 89/386 (23%), Positives = 162/386 (41%), Gaps = 51/386 (13%) Query: 10 YEQQLAEKVDRLRQMMLAFQVP---NLQIFRS----EPIHYRMRAEFHIWHDGDDLYHIM 62 YE+QL EK D + Q + + P +++ ++ P HYR +++F + +G +Y + Sbjct: 96 YEKQLLEKRDIVIQALERYAKPLAETVEVRKTLGMDNPWHYRNKSQFQVRKEGKRVYAGL 155 Query: 63 FDQQTKERMRID-----------YFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLT 111 F + + + + I+ + ++ L I + L+ L+R + + T Sbjct: 156 FAEGSNKLLNINDCLVQHPVTSKITVATRKILQKLNITIYDGRTLDGLVRTIVVRTGIRT 215 Query: 112 SQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERL 171 ++ V L+ R E R++ + Q I R + I + DE + Sbjct: 216 GETQ---VVLVTTRKEIPHLAELITRIKKIDPSIVSIAQNINREKTSLI-----FGDETI 267 Query: 172 TVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWV--LAATKGIQGDLLELYCGNG 221 + G+ I+ ++ +F Q N VH+ + + AA G + +++ YCG G Sbjct: 268 VLDGKETIHEELGELAFDLSARAFFQLNPTQTVHLYDEIKKAAALTGKE-SVVDAYCGVG 326 Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281 L LA V +++ S++ AR N + + K +++ R+E Sbjct: 327 TVGLWLADQAAEVRGMDVIPESIQDARKNARNHGFKHTKYAVGTAESVLSKWRKE----- 381 Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYPH-ILYISCNPDSLCRDLSILSTTH 339 + I VDPPR+GL + V + P +Y SCNP +L +DL LS + Sbjct: 382 -------GFTPDVITVDPPRTGLASEFIQTVLKLRPKRFVYTSCNPSTLAKDLQQLSKHY 434 Query: 340 TIERLALFDQFPYTRHMECGVLLVRK 365 +E + D F T +EC LV K Sbjct: 435 HVEYIQPVDMFSQTAQVECVAKLVLK 460 >gi|312277778|gb|ADQ62435.1| TRNA methyltransferase, TrmA family [Streptococcus thermophilus ND03] Length = 454 Score = 80.1 bits (196), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 85/388 (21%), Positives = 158/388 (40%), Gaps = 56/388 (14%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPNLQIFR-------SEPIHYRMRAEFHIWHDGDDLYHI 61 +Y++QL K D L Q + F+ N + + +P HYR + +F I G + Sbjct: 88 RYDKQLEFKTDLLGQALKKFKPANFESYEIRPTIGMKQPQHYRAKLQFQIRSFGGSVKAG 147 Query: 62 MFDQQTKERMRIDYFMPGSLLINALM-------------------IEMMATIRLEPLLRA 102 +F + + + ID + L A+M I + T+ + L + Sbjct: 148 LFAEGSHRLINIDDCLVQDELTQAIMNKVTNLLDKYKLPIYNERKISGIRTVMIRRALGS 207 Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162 Q+ ++TS + ++ L+ L ++ E + +++ +I +T+I Sbjct: 208 NQVQLIFVTS-NPVSLTKLVKELTL--SYPEIVTVAVNYNYSKSSEI----YGQETEIIW 260 Query: 163 DRDYVDERL---TVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCG 219 +D + E + A + Q+ T+ G V LE + L++ YCG Sbjct: 261 GQDTIQEEVLDYNFALSPRAFYQLNPKQTEVLYGQAVEALEVDKSE------HLIDAYCG 314 Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279 G L A+ + ++I ++E AR N + ++N +++ +E Sbjct: 315 VGTIGLAFAKKVSTIRGMDIIPEAIEDARKNAESLGLDNAHYEVGKAEDIIPRWYKE--- 371 Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILST 337 YR + VDPPR+GLD + + Y ++Y+SCN +L RDL L+ Sbjct: 372 ---------GYRADALIVDPPRTGLDSKLLKTILEYTPKKMVYVSCNVSTLARDLVSLAK 422 Query: 338 THTIERLALFDQFPYTRHMECGVLLVRK 365 + + + D FP+T E V L +K Sbjct: 423 VYDVNYIQSVDMFPHTARTEAVVKLTKK 450 >gi|257869904|ref|ZP_05649557.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus gallinarum EG2] gi|257804068|gb|EEV32890.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus gallinarum EG2] Length = 467 Score = 80.1 bits (196), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 50/156 (32%), Positives = 77/156 (49%), Gaps = 17/156 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK-IVRMSSKEFTQ 271 +++ Y G G + LA VL +E+ +VE A+ N A N + NV V + K Q Sbjct: 322 VVDAYAGIGTIGISLADRVQEVLGMEVVAEAVEDAKANAARNGLENVHYFVGKAEKIMPQ 381 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLC 329 +R + +FVDPPR GL+ + + A I+YISCNP +L Sbjct: 382 WLR-------------EGIQPTVVFVDPPRKGLEASFIETTAAVKPERIVYISCNPATLA 428 Query: 330 RDLSILSTT-HTIERLALFDQFPYTRHMECGVLLVR 364 RDL++ + + +++ D FP T H+EC VL+ R Sbjct: 429 RDLALFAEEGYVTKQVQPVDLFPQTTHVECVVLMSR 464 >gi|229148824|ref|ZP_04277072.1| Uncharacterized RNA methyltransferase [Bacillus cereus m1550] gi|228634618|gb|EEK91199.1| Uncharacterized RNA methyltransferase [Bacillus cereus m1550] Length = 459 Score = 80.1 bits (196), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 47/155 (30%), Positives = 77/155 (49%), Gaps = 14/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G L LA V +++ ++ AR N + N K ++++ Sbjct: 317 IVDAYCGVGTIGLWLANDAAEVRGMDVIPEAIADARKNAKRHGFTNTKYEAGKAEQWLPK 376 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCR 330 +E +R I VDPPR+G DD + +++ P ++Y+SCNP SL R Sbjct: 377 WVKE------------GWRPDVIVVDPPRTGCDDKLLETILKVKPKQVVYVSCNPSSLAR 424 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 D+ L ++ +E + D FP+T H+E V LVRK Sbjct: 425 DVQALMKSYEVEYVQPVDMFPHTAHVENVVKLVRK 459 >gi|262173414|ref|ZP_06041091.1| RNA methyltransferase TrmA family [Vibrio mimicus MB-451] gi|261890772|gb|EEY36759.1| RNA methyltransferase TrmA family [Vibrio mimicus MB-451] Length = 375 Score = 80.1 bits (196), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 52/184 (28%), Positives = 86/184 (46%), Gaps = 19/184 (10%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 SF Q N + + A + I + +L+CG G F+L A V +EI + Sbjct: 208 KSFFQTNPKVAEQLYATARAWVREIAPTQMWDLFCGVGGFALHCAAPDTAVTGIEIEPEA 267 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 + +A+ + ++N+ + S +F+Q+ E + V+PPR G Sbjct: 268 IASAQRSAQMMGIDNLSFAALDSAKFSQSQMSAPEL---------------VLVNPPRRG 312 Query: 304 LDDATVGMVQAYP--HILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVL 361 L ++A H+LY SCNP ++ +D++ L++ I R+ FD FP+T H E L Sbjct: 313 LGSELTAQLEALAPKHVLYSSCNPQTMVKDIAELASYQMI-RVQWFDMFPHTDHAEVLTL 371 Query: 362 LVRK 365 LVRK Sbjct: 372 LVRK 375 >gi|228983684|ref|ZP_04143884.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228776036|gb|EEM24402.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 459 Score = 80.1 bits (196), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 47/155 (30%), Positives = 77/155 (49%), Gaps = 14/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G L LA V +++ ++ AR N + N K ++++ Sbjct: 317 IVDAYCGVGTIGLWLANDAAEVRGMDVIPEAIADARKNAKRHGFTNTKYEAGKAEQWLPK 376 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCR 330 +E +R I VDPPR+G DD + +++ P ++Y+SCNP SL R Sbjct: 377 WVKE------------GWRPDVIVVDPPRTGCDDKLLETILKVKPKQVVYVSCNPSSLAR 424 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 D+ L ++ +E + D FP+T H+E V LVRK Sbjct: 425 DVQALMKSYEVEYVQPVDMFPHTAHVENVVKLVRK 459 >gi|146422481|ref|XP_001487178.1| hypothetical protein PGUG_00555 [Meyerozyma guilliermondii ATCC 6260] Length = 532 Score = 80.1 bits (196), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 67/228 (29%), Positives = 109/228 (47%), Gaps = 26/228 (11%) Query: 148 QIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWV---LA 204 ++ I + K C+ R V GR + E F Q N I +L++V LA Sbjct: 319 EVSTIKDNDSIKTCVTNSRQIVREVVDGREFEFSAGE--FFQNNNSILPAVLQYVRSNLA 376 Query: 205 ATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRM 264 + L++ YCG+G FS+ + + +V+ VE++ SV+ A N A N++ NVK + Sbjct: 377 ISDKQDNYLVDAYCGSGLFSISCSDNVKKVIGVEVSADSVKFAERNAANNNIANVKFIVG 436 Query: 265 SSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYIS 322 ++E KDID + + ++ +DPPR G DD + + Y I+YIS Sbjct: 437 KAEEI------------FKDIDTPALQ-TSVILDPPRKGCDDVFLNQLSEYNPVKIVYIS 483 Query: 323 CNPDSLCRDL------SILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 CN S RD+ ++ + +E + FD FP T H+E +L+R Sbjct: 484 CNVHSQARDVEWFLNNTVNGANYKVESIKGFDFFPQTHHVESVAVLIR 531 >gi|190344722|gb|EDK36457.2| hypothetical protein PGUG_00555 [Meyerozyma guilliermondii ATCC 6260] Length = 532 Score = 80.1 bits (196), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 67/228 (29%), Positives = 109/228 (47%), Gaps = 26/228 (11%) Query: 148 QIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWV---LA 204 ++ I + K C+ R V GR + E F Q N I +L++V LA Sbjct: 319 EVSTIKDNDSIKTCVTNSRQIVREVVDGREFEFSAGE--FFQNNNSILPAVLQYVRSNLA 376 Query: 205 ATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRM 264 + L++ YCG+G FS+ + + +V+ VE++ SV+ A N A N++ NVK + Sbjct: 377 ISDKQDNYLVDAYCGSGLFSISCSDNVKKVIGVEVSADSVKFAERNAANNNIANVKFIVG 436 Query: 265 SSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYIS 322 ++E KDID + + ++ +DPPR G DD + + Y I+YIS Sbjct: 437 KAEEI------------FKDIDTPASQ-TSVILDPPRKGCDDVFLNQLSEYNPVKIVYIS 483 Query: 323 CNPDSLCRDL------SILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 CN S RD+ ++ + +E + FD FP T H+E +L+R Sbjct: 484 CNVHSQARDVEWFLNNTVNGANYKVESIKGFDFFPQTHHVESVAVLIR 531 >gi|258625542|ref|ZP_05720431.1| 23S rRNA (uracil-5-)-methyltransferase rumB [Vibrio mimicus VM603] gi|258582186|gb|EEW07046.1| 23S rRNA (uracil-5-)-methyltransferase rumB [Vibrio mimicus VM603] Length = 375 Score = 80.1 bits (196), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 52/184 (28%), Positives = 86/184 (46%), Gaps = 19/184 (10%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 SF Q N + + A + I + +L+CG G F+L A V +EI + Sbjct: 208 KSFFQTNPKVAEQLYATARAWVREIAPTQMWDLFCGVGGFALHCAAPDTAVTGIEIEPEA 267 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 + +A+ + ++N+ + S +F+Q+ E + V+PPR G Sbjct: 268 IASAQRSAQMMGIDNLSFAALDSAKFSQSQMSAPEL---------------VLVNPPRRG 312 Query: 304 LDDATVGMVQAYP--HILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVL 361 L ++A HILY SCNP ++ +D++ L++ I R+ FD FP+T H E L Sbjct: 313 LGSELTAQLEALAPKHILYSSCNPQTMVKDIAELASYQMI-RVQWFDMFPHTDHAEVLTL 371 Query: 362 LVRK 365 L+RK Sbjct: 372 LIRK 375 >gi|160947332|ref|ZP_02094499.1| hypothetical protein PEPMIC_01266 [Parvimonas micra ATCC 33270] gi|158446466|gb|EDP23461.1| hypothetical protein PEPMIC_01266 [Parvimonas micra ATCC 33270] Length = 448 Score = 80.1 bits (196), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 49/152 (32%), Positives = 78/152 (51%), Gaps = 16/152 (10%) Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271 +LL+LY G G S+ + +F +V+ VE+ K +V+ A+ N+ N V NV+ + S+E + Sbjct: 294 NLLDLYSGIGTTSIYFSENFKKVIGVEVVKDAVKDAKENLKLNDVKNVEFLYGKSEEKIE 353 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLC 329 + + +IDI S VDPPR GLD V + ++Y+SCN +L Sbjct: 354 EILKNN------NIDIIS-------VDPPRKGLDKKVVDTIIKSNIKKVVYVSCNGATLT 400 Query: 330 RDLS-ILSTTHTIERLALFDQFPYTRHMECGV 360 RDL + ++++ L D F T H E V Sbjct: 401 RDLKYFIDGGFELKKVKLCDMFSKTGHCEVVV 432 >gi|256847809|ref|ZP_05553254.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus coleohominis 101-4-CHN] gi|256715498|gb|EEU30474.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus coleohominis 101-4-CHN] Length = 458 Score = 80.1 bits (196), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 45/156 (28%), Positives = 75/156 (48%), Gaps = 16/156 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G SL +A+H +V VEI ++ A+ N N + N + V Sbjct: 312 VIDAYCGIGTISLAVAKHAKQVYGVEIVPAAIADAKKNAQNNEITNAEFV---------V 362 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCR 330 + E +F + + + + VDPPR GL ++ + A ++Y+SCNP +L R Sbjct: 363 GKAEEQFAKWQ---AEGLKPDVVIVDPPRKGLAESLIEATGKMAPKKVIYVSCNPATLVR 419 Query: 331 DLSILSTT--HTIERLALFDQFPYTRHMECGVLLVR 364 D+ + H + + DQFP T H+E +L R Sbjct: 420 DIQRFAEQGYHVTKPIQPVDQFPQTTHVESVTVLER 455 >gi|229148722|ref|ZP_04276972.1| Uncharacterized RNA methyltransferase [Bacillus cereus m1550] gi|228634730|gb|EEK91309.1| Uncharacterized RNA methyltransferase [Bacillus cereus m1550] Length = 454 Score = 80.1 bits (196), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 47/149 (31%), Positives = 78/149 (52%), Gaps = 15/149 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G+ SL LA+ +V VEI ++E A N A N++ N + ++ Sbjct: 311 VIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFGVGEAEVVIPK 370 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330 +E + D T+ VDPPR G D+A + ++ P+ ++Y+SCNP +L R Sbjct: 371 WYKE---GVIAD---------TMVVDPPRKGCDEALLNTIIDMKPNRVVYVSCNPATLAR 418 Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMEC 358 DL +L + + + D FP+T H+EC Sbjct: 419 DLKVLEEGGYKTQEIQPVDMFPHTTHVEC 447 >gi|239628824|ref|ZP_04671855.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239518970|gb|EEQ58836.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 475 Score = 80.1 bits (196), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 54/154 (35%), Positives = 81/154 (52%), Gaps = 14/154 (9%) Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274 +LYCG G SL LA+ +V VEI ++E AR N A N ++NV+ ++E + Sbjct: 333 DLYCGIGTISLFLAQKAKKVYGVEIIPQAIEDARRNAALNGMDNVEFFVGKAEE---VLP 389 Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYPH-ILYISCNPDSLCRDL 332 + E N+ IH+ I VDPPR G D + + + P ++Y+SC+ +L RDL Sbjct: 390 EQYEKNQ-----IHA---DVIVVDPPRKGCDTVCLDTILKMRPEKVVYVSCDSATLARDL 441 Query: 333 SILS-TTHTIERLALFDQFPYTRHMECGVLLVRK 365 L+ + + ++ D FP T H EC V L RK Sbjct: 442 RYLADGGYVVGKVRGCDMFPGTVHTECIVELCRK 475 >gi|148981901|ref|ZP_01816559.1| 23S rRNA (uracil-5-)-methyltransferase [Vibrionales bacterium SWAT-3] gi|145960702|gb|EDK26044.1| 23S rRNA (uracil-5-)-methyltransferase [Vibrionales bacterium SWAT-3] Length = 439 Score = 80.1 bits (196), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 60/200 (30%), Positives = 94/200 (47%), Gaps = 31/200 (15%) Query: 175 GRTLIYRQIENSFTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARH 230 G TL + N F Q N +N M +EW+ +L+L+CG GNFSL +A+ Sbjct: 260 GVTLPFE--PNHFIQVNQKVNQQMVAQAIEWLEPKA---DERVLDLFCGLGNFSLPIAQQ 314 Query: 231 FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY 290 V+ VE V+ A N N ++N EF QA N +D+ ++ Sbjct: 315 SAFVVGVEGVDEMVQQATSNAQLNQLSNT--------EFYQA-------NLEEDLSAQAW 359 Query: 291 ---RFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDL-SILSTTHTIERL 344 +F I +DP R+G V + A ++Y+SCNP +L RD S+ + + +L Sbjct: 360 AKEKFDKILLDPARAGA-SGVVDQISALGAKRVVYVSCNPATLARDSESLEKQGYQLAKL 418 Query: 345 ALFDQFPYTRHMECGVLLVR 364 + D FP+T H+E L ++ Sbjct: 419 GMLDMFPHTSHLESMALFIK 438 >gi|168186646|ref|ZP_02621281.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum C str. Eklund] gi|169295463|gb|EDS77596.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum C str. Eklund] Length = 450 Score = 80.1 bits (196), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 59/236 (25%), Positives = 106/236 (44%), Gaps = 31/236 (13%) Query: 137 RLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINV 196 L LH + + +A+ K+ RDY+ E + L ++ SF Q N Sbjct: 238 ELTGILHTINDSLSDVVQADSMKVLFGRDYIMEEVL----GLKFKISPFSFFQ----TNT 289 Query: 197 HMLEWVLAATKGIQGD-----LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251 E + + + GD + +LYCG G + A + ++V+ +E+ + +V+AA N Sbjct: 290 KGAEALYSIVREFMGDAKSKVVFDLYCGTGTIGQIAAHNAEKVIGIELIEEAVKAANENA 349 Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311 N + N + + + +KDI + I +DPPR G+ + Sbjct: 350 KLNGLTNCEFLAGDVAKV------------IKDIKVKP---DIIILDPPRPGVHPDALKY 394 Query: 312 VQAY--PHILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 V + I+Y+SCNP +L DL ++ + +E++ + D FP+T H+E V L + Sbjct: 395 VTKFNAKDIIYVSCNPKTLVEDLKYLIKEGYKVEKVKVKDMFPHTPHVESAVKLSK 450 >gi|289648123|ref|ZP_06479466.1| 23S rRNA 5-methyluridine methyltransferase [Pseudomonas syringae pv. aesculi str. 2250] Length = 451 Score = 80.1 bits (196), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 55/182 (30%), Positives = 88/182 (48%), Gaps = 17/182 (9%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 F Q NA +N M+E L + + +++L+CG GNF+L LA V+AVE Sbjct: 279 GDFIQVNAAVNTAMIEQALQWLAPAKDERVMDLFCGLGNFALPLAGLAKEVVAVEGVATM 338 Query: 244 VEAARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302 VE A N +N ++NV+ + S+ T A D + F + +DPPR Sbjct: 339 VERAAVNAMSNDLHNVQFFQADLSQPLTHA-------------DWAAEGFSAVLLDPPRD 385 Query: 303 GLDDATVGMVQAYP-HILYISCNPDSLCRD-LSILSTTHTIERLALFDQFPYTRHMECGV 360 G + + + +LY+SCN +L RD + ++S + ++R + D FP T H+E Sbjct: 386 GAFEVVRQIRKTGARRLLYVSCNSATLARDTVELISQGYRLKRAGILDMFPQTAHVEAMA 445 Query: 361 LL 362 L Sbjct: 446 LF 447 >gi|126649520|ref|ZP_01721761.1| RNA methyltransferase, TrmA family protein [Bacillus sp. B14905] gi|126593845|gb|EAZ87768.1| RNA methyltransferase, TrmA family protein [Bacillus sp. B14905] Length = 465 Score = 80.1 bits (196), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 88/385 (22%), Positives = 161/385 (41%), Gaps = 49/385 (12%) Query: 10 YEQQLAEKVDRLRQMMLAFQVP---NLQIFRS----EPIHYRMRAEFHIWHDGDDLYHIM 62 YE+QL+EK D + Q + + P +++ ++ P HYR +++F + +G +Y + Sbjct: 96 YEKQLSEKRDIVIQALERYAKPLAETVEVRKTLGMDNPWHYRNKSQFQVRKEGKRVYAGL 155 Query: 63 FDQQTKERMRID-----------YFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLT 111 F + + + + I+ + ++ L I + L+ L+R + + T Sbjct: 156 FVEGSNKLLNINDCLVQHPVTSKVTVATRKILQKLNITIYDGRTLDGLVRTIVVRTGIRT 215 Query: 112 SQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERL 171 ++ V L+ R E R++ + Q I R + I + DE + Sbjct: 216 GETQ---VVLVTTRKEIPHLAELITRIKKIDPSIVSIAQNINREKTSLI-----FGDETI 267 Query: 172 TVAGRTLIYRQIEN--------SFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGNGN 222 + G+ I+ ++ +F Q N VH+ E AA + +++ YCG G Sbjct: 268 VLDGKETIHEELGELAFDLSARAFFQLNPTQTVHLYNEIKKAAALTGKESIVDAYCGVGT 327 Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282 L LA V +++ S++ AR N + + K +++ R+E Sbjct: 328 VGLWLADQAQEVRGMDVIPESIQDARKNARNHGFKHTKYAVGTAESVLAKWRKE------ 381 Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYPH-ILYISCNPDSLCRDLSILSTTHT 340 + I VDPPR+GL + V + P +Y SCNP +L +DL LS + Sbjct: 382 ------GFTPDVITVDPPRTGLAPEFIQTVLKLKPKRFVYTSCNPSTLAKDLQQLSKLYH 435 Query: 341 IERLALFDQFPYTRHMECGVLLVRK 365 +E + D F T +EC +V K Sbjct: 436 VEYIQPVDMFSQTAQVECVCSMVLK 460 >gi|238791235|ref|ZP_04634874.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Yersinia intermedia ATCC 29909] gi|238729368|gb|EEQ20883.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Yersinia intermedia ATCC 29909] Length = 425 Score = 80.1 bits (196), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 55/185 (29%), Positives = 93/185 (50%), Gaps = 17/185 (9%) Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 F Q N +N M+ LA +Q D +L+L+CG GNF+L LA+ V+ VE V Sbjct: 251 FIQVNDTVNQQMVAQALAWLD-VQPDERVLDLFCGMGNFTLPLAKRAREVVGVEGVAELV 309 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 +YN +N + NV F + + E + +R + F + +DP R+G Sbjct: 310 ANGQYNAQSNALANVSF-------FHENL--ESDISRQP---WATQGFDKVLLDPARAGA 357 Query: 305 DDATVGMVQAYPH-ILYISCNPDSLCRDLSI-LSTTHTIERLALFDQFPYTRHMECGVLL 362 +V+ P ++Y+SCNP +L RD + L+ + + ++ + D FP+T H+E L Sbjct: 358 AGVMSHIVKLAPKRVVYVSCNPTTLARDSQVLLAAGYRLAQVRMLDMFPHTGHLESMALF 417 Query: 363 VRKPS 367 +++P Sbjct: 418 MQEPG 422 >gi|146328742|ref|YP_001209970.1| 23S rRNA methyltransferase [Dichelobacter nodosus VCS1703A] gi|146232212|gb|ABQ13190.1| 23S rRNA methyltransferase [Dichelobacter nodosus VCS1703A] Length = 424 Score = 80.1 bits (196), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 98/333 (29%), Positives = 156/333 (46%), Gaps = 43/333 (12%) Query: 43 YRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEP-LLR 101 YR RA + H +D+ + F K + D LI L + A + L P LR Sbjct: 122 YRRRARLAV-HYENDVIAVGF----KAKRSHDVVAVNDCLI--LQEHLAAALPLLPDFLR 174 Query: 102 AKL-FQID--YLTSQSDQAIVTL-IYHRLLDDAWRECAIRLRDALHARKYQIQ--LIGRA 155 A L ++D LT+ A +TL R L AW E L A H + ++ L G Sbjct: 175 ALLPVKVDEILLTAGEKVAALTLRTKKRALSPAWGEKWANLAGA-HWQLWENDRCLFGEP 233 Query: 156 NKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLL 214 N D Y ++G TL + + F Q NA +N +++ VLA ++ ++L Sbjct: 234 N------DLYY----QPISGVTLHF--TPDDFIQVNASVNEALIQTVLAWLAPLEKSEVL 281 Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274 +L+ G GNFSL LA RV AVE + V+ +AA ++SS+ Q M Sbjct: 282 DLFSGLGNFSLPLAYKGARVTAVEGVRAMVQRGA-KMAAEQ-------QLSSRLEMQCM- 332 Query: 275 REREFNRLKDIDIHSYR-FKTIFVDPPRSGLDDATVGMVQAYPH-ILYISCNPDSLCRDL 332 + + + S++ K+ +DPPR+G + + +P I+Y+SCNP +L RD+ Sbjct: 333 ---DLFSVSAAQMKSWQSAKSWLLDPPRAGAHAVVQALPKKFPEKIVYVSCNPATLARDV 389 Query: 333 SIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364 +IL S +ER + + F ++ H+E +L+ R Sbjct: 390 AILQSKGFHLERGQVVNMFAHSAHIESVILMTR 422 >gi|187934647|ref|YP_001887516.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum B str. Eklund 17B] gi|187722800|gb|ACD24021.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum B str. Eklund 17B] Length = 455 Score = 80.1 bits (196), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 50/164 (30%), Positives = 81/164 (49%), Gaps = 19/164 (11%) Query: 208 GIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265 G+ G+ + + YCG G +L L++ +V VEI +P++ A+ N N+V+N + Sbjct: 305 GLTGNETVFDAYCGTGTITLFLSQKAKKVYGVEIIEPAIINAKENAKLNNVDNAEFFVGK 364 Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA---TVGMVQAYPHILYIS 322 S+E + E + I VDPPR G D +G V+ ++Y+S Sbjct: 365 SEEVIPNLISE------------GLKADIIVVDPPRKGCDIKLLEAIGDVKP-ERVVYVS 411 Query: 323 CNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRK 365 C+P +L RDL IL + + + D FP T H+E V L++K Sbjct: 412 CDPSTLSRDLKILDEKGYKVVEIQPVDMFPQTSHIENVVKLIKK 455 >gi|310658499|ref|YP_003936220.1| RNA methyltransferase [Clostridium sticklandii DSM 519] gi|308825277|emb|CBH21315.1| Uncharacterized RNA methyltransferase CTC_01941 [Clostridium sticklandii] Length = 449 Score = 80.1 bits (196), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 52/175 (29%), Positives = 88/175 (50%), Gaps = 22/175 (12%) Query: 195 NVHMLEWVLAATKGIQGD----LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN 250 N H E + +A K + GD + +LY G G + ++ ++++ +EI + +VEAA+ N Sbjct: 288 NTHGAEVLYSAVKDMIGDKKDIIFDLYSGTGTIGITVSDKANKIVGIEIIEEAVEAAKEN 347 Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310 I N++ N + + A E +++ S + I +DPPR+G+ +G Sbjct: 348 IKKNNITNCEFI---------AGDVATEVSKI------SENPELILLDPPRAGIHPKAMG 392 Query: 311 MVQAY--PHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLL 362 + ++ ILYISCNP +L DL +L S + I+ + D F T H E V L Sbjct: 393 DIISFNSKEILYISCNPKALMHDLKVLKSAGYKIKEVVGVDLFANTPHCETIVKL 447 >gi|210613367|ref|ZP_03289687.1| hypothetical protein CLONEX_01894 [Clostridium nexile DSM 1787] gi|210151209|gb|EEA82217.1| hypothetical protein CLONEX_01894 [Clostridium nexile DSM 1787] Length = 464 Score = 80.1 bits (196), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 56/163 (34%), Positives = 81/163 (49%), Gaps = 9/163 (5%) Query: 208 GIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265 G+ G+ + +LYCG G SL LA+ +V VEI ++E A+ N A N + N + Sbjct: 304 GLHGNETVWDLYCGIGTISLFLAQKAKQVYGVEIIPQAIEDAKRNAALNGIENAQFFVGK 363 Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISC 323 S+E N K+ I VDPPR G D+ + M+Q P I+Y+SC Sbjct: 364 SEEVLPQYYE----NYAKEHGGEKAYADVIVVDPPRKGCDETLLETMIQMQPERIVYVSC 419 Query: 324 NPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRK 365 + +L RDL L + ++R+ D F T H+E VLL RK Sbjct: 420 DSATLARDLKYLCENGYELKRVRAVDMFANTVHVETVVLLQRK 462 >gi|116630115|ref|YP_815287.1| tRNA (uracil-5-)-methyltransferase related enzyme [Lactobacillus gasseri ATCC 33323] gi|116095697|gb|ABJ60849.1| tRNA (uracil-5-)-methyltransferase related enzyme [Lactobacillus gasseri ATCC 33323] Length = 450 Score = 80.1 bits (196), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 48/155 (30%), Positives = 74/155 (47%), Gaps = 15/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ Y G G L +A+H V +E+ KP+V+ A N N +NN + V ++E Sbjct: 305 VIDAYSGIGTIGLSVAKHVKAVRGMEVIKPAVDDANANAKLNGINNAEYVVGKAEEVMPR 364 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCR 330 +E + IFVDPPR GL + V+ +P I+YISCNP ++ R Sbjct: 365 WAKE------------GLKTDVIFVDPPRKGLTPEFIDAAVETHPKKIVYISCNPATMVR 412 Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364 DL + + + D FP T H+E +L R Sbjct: 413 DLQLFREQGYDFNEIDPVDMFPQTPHVESVTVLER 447 >gi|157056857|gb|ABV02443.1| hypothetical protein [Arcobacter skirrowii] Length = 69 Score = 80.1 bits (196), Expect = 6e-13, Method: Composition-based stats. Identities = 36/65 (55%), Positives = 46/65 (70%) Query: 298 DPPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHME 357 DP RSGLDD T + + + +I+YISCNP +L RDL L TH + R ALFDQF Y+ H+E Sbjct: 1 DPSRSGLDDTTRALAKNFTNIIYISCNPQTLHRDLEELLKTHKVLRFALFDQFAYSEHIE 60 Query: 358 CGVLL 362 GV+L Sbjct: 61 SGVIL 65 >gi|170730638|ref|YP_001776071.1| 23S rRNA 5-methyluridine methyltransferase [Xylella fastidiosa M12] gi|167965431|gb|ACA12441.1| RNA methyltransferase [Xylella fastidiosa M12] Length = 443 Score = 80.1 bits (196), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 56/184 (30%), Positives = 87/184 (47%), Gaps = 18/184 (9%) Query: 178 LIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELYCGNGNFSLVLARHFDRVLA 236 ++R ++ F Q N G+N M+ L G +L+L+CG GNF+L LAR V+ Sbjct: 266 FVFRPLD--FIQINGGLNEKMIAHALDLLGAGFGERVLDLFCGLGNFTLPLARTVGEVVG 323 Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296 VE VE AR N N + N + F + R++ +D F + Sbjct: 324 VEGDIGLVERARENARRNGLGNAEF-------FVADLTRDQ-----RDAPWMRQGFDKLL 371 Query: 297 VDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDLSILSTTH--TIERLALFDQFPYT 353 +DPPRSG + + ++ + I+Y+SC+P SL RD L + + D FP+T Sbjct: 372 LDPPRSGAIEVLKQLPLKMFERIVYVSCHPGSLARDADFLVNEQGFVLRAVGAMDMFPHT 431 Query: 354 RHME 357 H+E Sbjct: 432 AHVE 435 >gi|229074352|ref|ZP_04207390.1| Uncharacterized RNA methyltransferase [Bacillus cereus Rock4-18] gi|228708794|gb|EEL60929.1| Uncharacterized RNA methyltransferase [Bacillus cereus Rock4-18] Length = 459 Score = 80.1 bits (196), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 84/383 (21%), Positives = 167/383 (43%), Gaps = 46/383 (12%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQ------IFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63 Y++QL +K D + Q + +++ + P HYR +++ + + + ++ Sbjct: 96 YKEQLNQKRDIVVQAFEKYMKNSMEEKIRPTLGMENPWHYRNKSQLQVGRKDEKVITGLY 155 Query: 64 DQQTKERMRIDYFM-------PGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTS-QSD 115 Q + + + I + M + ++ ++ ++ +I E + + I T+ Q+ Sbjct: 156 KQNSHQLIDIAHCMIQHKATNEATKVVRRILEKLNVSIYNEKKQKGLVRTIVTRTAVQTG 215 Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175 + VTLI + + ++ + A K +Q + + I + D+ +AG Sbjct: 216 EVQVTLITTKEELPNKEQFIAEVQKQMPAVKSIMQNVNWRKTSVI-----FGDKTFKLAG 270 Query: 176 RTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSL 225 + +I + + +F Q N V + + A + G+ +++ YCG G L Sbjct: 271 KEVIQETLGDLSFELSARAFFQLNPEQTVVLYDEAKKAA-ALTGNEKIVDAYCGVGTIGL 329 Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285 LA V +++ ++ AR N + N K ++++ +E Sbjct: 330 WLANDAAEVRGMDVIPEAIADARKNAKRHGFTNTKYEAGKAEQWLPKWVKE--------- 380 Query: 286 DIHSYRFKTIFVDPPRSGLDDA---TVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIE 342 +R I VDPPR+G DD T+ VQ ++Y+SCNP SL RD++ L ++ +E Sbjct: 381 ---GWRPDVIVVDPPRTGCDDKLLETILKVQPK-RVVYVSCNPSSLARDVNALMKSYEVE 436 Query: 343 RLALFDQFPYTRHMECGVLLVRK 365 + D FP+T H+E V LV+K Sbjct: 437 YVQPVDMFPHTAHVENVVRLVKK 459 >gi|326571866|gb|EGE21871.1| 23S rRNA 5-methyluridine methyltransferase [Moraxella catarrhalis BC8] Length = 497 Score = 80.1 bits (196), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 80/298 (26%), Positives = 136/298 (45%), Gaps = 42/298 (14%) Query: 83 INALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH-RLLDDAWRECAIRLRDA 141 + AL+ ++ A + P L + Q S +++ ++ H + LDD E +LR Sbjct: 209 LKALITDLNARDSI-PQLEIAMGQTLPHVPDSIKSVAVIVRHMQELDD---EDLAKLRQF 264 Query: 142 LHARKYQIQLIGRANKTKICLD-RDYVDERLTVAGRTLIYRQIEN----------SFTQP 190 AR +Q+ L + + +D D LTV ++ + N FTQ Sbjct: 265 FAARNWQLLLQPKGVDSVHRIDTEDARPTSLTVPPTGGLFYHLPNFDLTYEFSPLDFTQV 324 Query: 191 NAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDR---VLAVEIAKPSVEA 246 N +N M++ + +G+ +L+L+CG GNFSLVLAR V+ VE ++ E Sbjct: 325 NLSVNQKMMDLASSLLNLQKGERVLDLFCGLGNFSLVLARQVGESGFVVGVEGSEQMTER 384 Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306 A+ N AN + + + +K+ TQ + + + RF + +DPPRSG + Sbjct: 385 AKMNACANGIAHTEFY---AKDLTQDLSDQ-------PWATGNNRFDALLIDPPRSGAWE 434 Query: 307 ATVGMVQAY------PHILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHME 357 V AY I+Y+SCNP +L RD +++ + + + D F +T H+E Sbjct: 435 -----VMAYLPKFNAKRIVYVSCNPVTLARDTKALIEAGYRLTHAGVMDMFSHTGHVE 487 >gi|308172559|ref|YP_003919264.1| RNA methyltransferase, TrmA family [Bacillus amyloliquefaciens DSM 7] gi|307605423|emb|CBI41794.1| RNA methyltransferase, TrmA family [Bacillus amyloliquefaciens DSM 7] gi|328552324|gb|AEB22816.1| RNA methyltransferase, TrmA family protein [Bacillus amyloliquefaciens TA208] gi|328910668|gb|AEB62264.1| RNA methyltransferase, TrmA family [Bacillus amyloliquefaciens LL3] Length = 458 Score = 80.1 bits (196), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 47/150 (31%), Positives = 74/150 (49%), Gaps = 17/150 (11%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G SL LA+ +V VEI ++E A+ N N + N + ++ Sbjct: 315 VIDAYCGIGTISLFLAKQAKKVYGVEIVPEAIEDAKRNAELNGITNAEFAVGEAETVIPK 374 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330 E T+ VDPPR G D+A + +++ P ++Y+SCNP +L R Sbjct: 375 WYEE------------GITADTLVVDPPRKGCDEALLRTIIEMKPKRVVYVSCNPGTLAR 422 Query: 331 DLSILSTT--HTIERLALFDQFPYTRHMEC 358 DL +L T+E + D FP+T H+EC Sbjct: 423 DLRVLEDGGYQTLE-VQPVDMFPHTNHVEC 451 >gi|303240517|ref|ZP_07327033.1| RNA methyltransferase, TrmA family [Acetivibrio cellulolyticus CD2] gi|302591919|gb|EFL61651.1| RNA methyltransferase, TrmA family [Acetivibrio cellulolyticus CD2] Length = 552 Score = 80.1 bits (196), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 52/162 (32%), Positives = 77/162 (47%), Gaps = 16/162 (9%) Query: 210 QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269 Q + +LYCG G SL L+ +V VE+ + +V A+ N N V NV+ ++ Sbjct: 313 QETVFDLYCGIGTISLFLSEKTKKVYGVEVVEEAVRDAKVNAGVNGVENVEFFVGEAERV 372 Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDS 327 M + + + VDPPR G D + +V P I+Y+SCNP + Sbjct: 373 IPEMYSK------------GIKADVVVVDPPRKGCDQVLLETLVSMEPRRIVYVSCNPAT 420 Query: 328 LCRDLSILST-THTIERLALFDQFPYTRHMECGVLLV-RKPS 367 L RDL L+ + + D FP+T H+E VLL +KPS Sbjct: 421 LARDLGFLTERGFKVLEVQPVDMFPWTAHVETVVLLSQQKPS 462 >gi|237738953|ref|ZP_04569434.1| tRNA (Uracil-5-)-methyltransferase [Fusobacterium sp. 2_1_31] gi|229423553|gb|EEO38600.1| tRNA (Uracil-5-)-methyltransferase [Fusobacterium sp. 2_1_31] Length = 453 Score = 80.1 bits (196), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 86/384 (22%), Positives = 163/384 (42%), Gaps = 47/384 (12%) Query: 9 QYEQQLAEKVDRLRQMMLAFQ-VPNLQI---FRSEPIH-YRMR--AEFHIWHDGDDLYHI 61 +YE QL K + ++M +P+++I SE ++ YR + F ++ G+ + Sbjct: 87 KYESQLKYKKLMVEEVMRKIAGLPDIEISDVLASEDVYNYRNKIIEPFSVY--GNKIITG 144 Query: 62 MFDQQTKERMRIDYFMPGSLLINALM-----------IEMMATIRLEPLLRAKLFQIDYL 110 F +++ E +D + S L N ++ I + I + LLR + + + Sbjct: 145 FFKRKSHEVFEVDENILNSKLGNRIIKELKEILNKNKISVYNEITHKGLLRNVMIRTN-- 202 Query: 111 TSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD----Y 166 S ++ +V +I + + + RLR+ + K I + + KT + Y Sbjct: 203 -SNNEAMLVLIINSNKITENIKNLLFRLREKIEEIK-SIYISLNSKKTNTVIGEKNIFIY 260 Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSL 225 +E + + + SF Q N + + + I +++ Y G G + Sbjct: 261 GEESIKENLNGIEFHISPTSFFQINVKQAKRLYDIAINFFDNIDDKYIVDAYSGTGTIGM 320 Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNRLKD 284 ++A+ +V A+EI K + E N + N++ + + KE + + Sbjct: 321 IMAKKAKKVYAIEIVKSASEDGERTAKENGIENIEFINGAVEKELVNLINANK------- 373 Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILSTT-HTI 341 R TI DPPR GL+ + + V ++YISCNP + RD+ + S + + Sbjct: 374 ------RIDTIIFDPPRKGLEASIIDKVAELNLKEVVYISCNPSTFARDVKLFSEKGYVL 427 Query: 342 ERLALFDQFPYTRHMECGVLLVRK 365 ++L D FP T H+EC V L+ K Sbjct: 428 KKLQAVDMFPQTSHIEC-VGLIEK 450 >gi|151941596|gb|EDN59959.1| tRNA methyltransferase [Saccharomyces cerevisiae YJM789] Length = 602 Score = 80.1 bits (196), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 50/160 (31%), Positives = 80/160 (50%), Gaps = 21/160 (13%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L++ YCG+G FS+ ++ D+V+ VEI+ SV A N AN V N + + +++ ++ Sbjct: 455 LVDAYCGSGLFSICSSKGVDKVIGVEISADSVSFAEKNAKANGVENCRFIVGKAEKLFES 514 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330 ID S ++ +DPPR G D+ + + AY I+YISCN S R Sbjct: 515 ------------IDTPSEN-TSVILDPPRKGCDELFLKQLAAYNPAKIIYISCNVHSQAR 561 Query: 331 DLSIL------STTHTIERLALFDQFPYTRHMECGVLLVR 364 D+ + + IE + FD FP T H+E ++ R Sbjct: 562 DVEYFLKETENGSAYQIESIRGFDFFPQTHHVESVCIMKR 601 >gi|296112377|ref|YP_003626315.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Moraxella catarrhalis RH4] gi|295920071|gb|ADG60422.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Moraxella catarrhalis RH4] gi|326569193|gb|EGE19254.1| 23S rRNA 5-methyluridine methyltransferase [Moraxella catarrhalis BC7] Length = 497 Score = 79.7 bits (195), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 80/298 (26%), Positives = 136/298 (45%), Gaps = 42/298 (14%) Query: 83 INALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH-RLLDDAWRECAIRLRDA 141 + AL+ ++ A + P L + Q S +++ ++ H + LDD E +LR Sbjct: 209 LKALITDLNARDSI-PQLEIAMGQTLPHVPDSIKSVAVIVRHMQELDD---EDLAKLRQF 264 Query: 142 LHARKYQIQLIGRANKTKICLD-RDYVDERLTVAGRTLIYRQIEN----------SFTQP 190 AR +Q+ L + + +D D LTV ++ + N FTQ Sbjct: 265 FAARNWQLLLQPKGVDSVHRIDTEDARPTSLTVPPTGGLFYHLPNFELTYEFSPLDFTQV 324 Query: 191 NAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDR---VLAVEIAKPSVEA 246 N +N M++ + +G+ +L+L+CG GNFSLVLAR V+ VE ++ E Sbjct: 325 NLSVNQKMMDLASSLLNLQKGERVLDLFCGLGNFSLVLARQVGESGFVVGVEGSEQMTER 384 Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306 A+ N AN + + + +K+ TQ + + + RF + +DPPRSG + Sbjct: 385 AKMNACANGIAHTEFY---AKDLTQDLSDQ-------PWATGNNRFDALLIDPPRSGAWE 434 Query: 307 ATVGMVQAY------PHILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHME 357 V AY I+Y+SCNP +L RD +++ + + + D F +T H+E Sbjct: 435 -----VMAYLPKFNAKRIVYVSCNPVTLARDTKALIEAGYRLTHAGVMDMFSHTGHVE 487 >gi|255716342|ref|XP_002554452.1| KLTH0F05676p [Lachancea thermotolerans] gi|238935835|emb|CAR24015.1| KLTH0F05676p [Lachancea thermotolerans] Length = 597 Score = 79.7 bits (195), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 68/223 (30%), Positives = 98/223 (43%), Gaps = 33/223 (14%) Query: 157 KTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD---- 212 KT + R V E + G T + E F Q N I + E+V + + I G Sbjct: 392 KTCVTNSRQVVTEYIN--GYTFEFSAGE--FFQNNNSILPKVTEYVCSNLQ-IPGSKPED 446 Query: 213 ---LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269 L++ YCG+G FS+ ++ D+V+ VE++ SV A N AN V N K V ++ Sbjct: 447 PHYLVDAYCGSGLFSITASKGVDKVIGVEVSADSVSFAEANAKANGVENCKFVVGKAECI 506 Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDS 327 ID R ++ +DPPR G DD + + Y I+YISCN S Sbjct: 507 ------------FASIDTPCDR-TSVILDPPRKGCDDIFLKQLSEYNPARIVYISCNVHS 553 Query: 328 LCRDLSIL------STTHTIERLALFDQFPYTRHMECGVLLVR 364 RD+ + +E L FD FP T H+E +L R Sbjct: 554 QARDMQYFLQETEKGKQYKVESLRGFDFFPQTHHVESVCVLTR 596 >gi|228963414|ref|ZP_04124575.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis serovar sotto str. T04001] gi|228796308|gb|EEM43755.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis serovar sotto str. T04001] Length = 455 Score = 79.7 bits (195), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 47/149 (31%), Positives = 78/149 (52%), Gaps = 15/149 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G+ SL LA+ +V VEI ++E A N A N++ N + ++ Sbjct: 311 VIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFGVGEAEVVIPK 370 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330 +E + D T+ VDPPR G D+A + ++ P+ ++Y+SCNP +L R Sbjct: 371 WYKE---GVIAD---------TMVVDPPRKGCDEALLNTIIDMKPNRVVYVSCNPATLAR 418 Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMEC 358 DL +L + + + D FP+T H+EC Sbjct: 419 DLKVLEEGGYKTQEVQPVDMFPHTTHVEC 447 >gi|229188589|ref|ZP_04315628.1| Uncharacterized RNA methyltransferase [Bacillus cereus ATCC 10876] gi|228594778|gb|EEK52558.1| Uncharacterized RNA methyltransferase [Bacillus cereus ATCC 10876] Length = 454 Score = 79.7 bits (195), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 47/149 (31%), Positives = 78/149 (52%), Gaps = 15/149 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G+ SL LA+ +V VEI ++E A N A N++ N + ++ Sbjct: 311 VIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFGVGEAEVVIPK 370 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330 +E + D T+ VDPPR G D+A + ++ P+ ++Y+SCNP +L R Sbjct: 371 WYKE---GVIAD---------TMVVDPPRKGCDEALLNTIIDMKPNRVVYVSCNPATLAR 418 Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMEC 358 DL +L + + + D FP+T H+EC Sbjct: 419 DLKVLEEGGYKTQEVQPVDMFPHTTHVEC 447 >gi|116624915|ref|YP_827071.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Candidatus Solibacter usitatus Ellin6076] gi|116228077|gb|ABJ86786.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Candidatus Solibacter usitatus Ellin6076] Length = 389 Score = 79.7 bits (195), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 57/187 (30%), Positives = 95/187 (50%), Gaps = 22/187 (11%) Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLARHFDRVLAVE 238 +R NSF Q N + ++E A +G +GD L+LY G G SL LAR F V AVE Sbjct: 219 FRVSSNSFFQVNRFLIDRLVE---VAIEGAEGDTALDLYAGVGLLSLPLARKFREVTAVE 275 Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298 +V ++N N + NV+ + +++E+ A+ + + +D Sbjct: 276 SGAGAVRDLQFNAERNGLANVRALPKTAEEYLLALEAAPDL---------------VVLD 320 Query: 299 PPRSGLDDATVG-MVQAYP-HILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRH 355 PPR+GL V + + P + ++C+P +L RDL+ +++ + +E++ L D FP T H Sbjct: 321 PPRTGLGKTVVKRLSELRPRQVTIVACDPATLARDLAGLVAAGYRVEKMTLVDLFPQTYH 380 Query: 356 MECGVLL 362 +E V L Sbjct: 381 LETVVRL 387 >gi|134300101|ref|YP_001113597.1| RNA methyltransferase [Desulfotomaculum reducens MI-1] gi|134052801|gb|ABO50772.1| 23S rRNA m(5)U-1939 methyltransferase [Desulfotomaculum reducens MI-1] Length = 457 Score = 79.7 bits (195), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 44/153 (28%), Positives = 76/153 (49%), Gaps = 16/153 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G +L LAR V+ +EI P+V A+ N N + N K + + ++ Sbjct: 314 VIDAYCGIGTIALYLARSTVEVVGMEIVPPAVADAKENARLNGITNTKFFQGAVEKLLPR 373 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCR 330 M ++ + + +DPPR G + + + P I+Y+SC+P +L R Sbjct: 374 MAKD-------------LKPDVVVLDPPRKGCEKEVLTAISESKVPRIVYVSCDPATLAR 420 Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLL 362 DL +L + ++ D FP+T H+EC VL+ Sbjct: 421 DLGVLDKLGYQTLQVQPVDMFPWTYHVECVVLM 453 >gi|238854152|ref|ZP_04644499.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus gasseri 202-4] gi|238833228|gb|EEQ25518.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus gasseri 202-4] Length = 450 Score = 79.7 bits (195), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 48/155 (30%), Positives = 74/155 (47%), Gaps = 15/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ Y G G L +A+H V +E+ KP+V+ A N N +NN + V ++E Sbjct: 305 VIDAYSGIGTIGLSVAKHVKAVRGMEVIKPAVDDANANAKLNGINNAEYVVGKAEEVMPR 364 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCR 330 +E + IFVDPPR GL + V+ +P I+YISCNP ++ R Sbjct: 365 WAKE------------GLKTDVIFVDPPRKGLTPEFIDAAVETHPKKIVYISCNPATMVR 412 Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364 DL + + + D FP T H+E +L R Sbjct: 413 DLQLFREQGYDFNEIDPVDMFPQTPHVESVTVLER 447 >gi|218233353|ref|YP_002365162.1| RNA methyltransferase, TrmA family [Bacillus cereus B4264] gi|218161310|gb|ACK61302.1| RNA methyltransferase, TrmA family [Bacillus cereus B4264] Length = 454 Score = 79.7 bits (195), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 47/149 (31%), Positives = 78/149 (52%), Gaps = 15/149 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G+ SL LA+ +V VEI ++E A N A N++ N + ++ Sbjct: 311 VIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFGVGEAEVVIPK 370 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330 +E + D T+ VDPPR G D+A + ++ P+ ++Y+SCNP +L R Sbjct: 371 WYKE---GVIAD---------TMVVDPPRKGCDEALLNTIIDMKPNRVVYVSCNPATLAR 418 Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMEC 358 DL +L + + + D FP+T H+EC Sbjct: 419 DLKVLEEGGYKTQEVQPVDMFPHTTHVEC 447 >gi|229526519|ref|ZP_04415923.1| RNA methyltransferase TrmA family [Vibrio cholerae bv. albensis VL426] gi|229336677|gb|EEO01695.1| RNA methyltransferase TrmA family [Vibrio cholerae bv. albensis VL426] Length = 377 Score = 79.7 bits (195), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 53/184 (28%), Positives = 86/184 (46%), Gaps = 19/184 (10%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 SF Q N + + A + I + +L+CG G F+L A V +EI + Sbjct: 208 KSFFQTNPKVAEQLYATARAWVREIAPTQMWDLFCGVGGFALHCAAPNTAVTGIEIEPEA 267 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 + +A+ + ++N+ + S +F+Q+ E + V+PPR G Sbjct: 268 IASAQRSAQMMGIDNLSFAALDSAKFSQSQMSAPEL---------------VLVNPPRRG 312 Query: 304 LDDATVGMVQAYP--HILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVL 361 L ++A HILY SCNP ++ +D++ L++ I R+ FD FP+T H E L Sbjct: 313 LGCELTAQLEALAPKHILYSSCNPQTMAKDIAELASYQMI-RVQWFDMFPHTDHAEVLTL 371 Query: 362 LVRK 365 LVRK Sbjct: 372 LVRK 375 >gi|320527936|ref|ZP_08029102.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Solobacterium moorei F0204] gi|320131562|gb|EFW24126.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Solobacterium moorei F0204] Length = 534 Score = 79.7 bits (195), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 61/206 (29%), Positives = 99/206 (48%), Gaps = 22/206 (10%) Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQ--PNAGINVHMLEWVLAATKGIQGDLLELYCGNG 221 R Y++E L G T +R SF Q P A ++ LA G + L++LYCG G Sbjct: 253 RHYIEEELL--GCT--FRISARSFYQINPYATKELYSKAIELAGLTGNE-TLIDLYCGTG 307 Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281 ++ A+ +V +EI ++ A N N+V N+K + + E + + Sbjct: 308 TMGIIAAKQAKQVYGIEIVADAIRDANTNAENNNVTNIKFINADASEGAK---------Q 358 Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCRDLSILS-TT 338 + D I + + +DPPR G T+ +V P ++Y+SC+P +L RD+ ILS Sbjct: 359 IIDAKIQA---DAMIIDPPRKGCSKDTIDAIVTIAPKKLVYVSCDPATLARDVKILSDNG 415 Query: 339 HTIERLALFDQFPYTRHMECGVLLVR 364 + +E + D FP T H+E LL + Sbjct: 416 YKLELVQPVDLFPQTVHVETVALLSK 441 >gi|207343360|gb|EDZ70840.1| YKR056Wp-like protein [Saccharomyces cerevisiae AWRI1631] Length = 602 Score = 79.7 bits (195), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 50/160 (31%), Positives = 80/160 (50%), Gaps = 21/160 (13%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L++ YCG+G FS+ ++ D+V+ VEI+ SV A N AN V N + + +++ ++ Sbjct: 455 LVDAYCGSGLFSICSSKGVDKVIGVEISADSVSFAEKNAKANGVENCRFIVGKAEKLFES 514 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330 ID S ++ +DPPR G D+ + + AY I+YISCN S R Sbjct: 515 ------------IDTPSEN-TSVILDPPRKGCDELFLKQLAAYNPAKIIYISCNVHSQAR 561 Query: 331 DLSIL------STTHTIERLALFDQFPYTRHMECGVLLVR 364 D+ + + IE + FD FP T H+E ++ R Sbjct: 562 DVEYFLKETENGSAYQIESIRGFDFFPQTHHVESVCIMKR 601 >gi|326576535|gb|EGE26443.1| 23S rRNA 5-methyluridine methyltransferase [Moraxella catarrhalis CO72] Length = 473 Score = 79.7 bits (195), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 80/298 (26%), Positives = 136/298 (45%), Gaps = 42/298 (14%) Query: 83 INALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH-RLLDDAWRECAIRLRDA 141 + AL+ ++ A + P L + Q S +++ ++ H + LDD E +LR Sbjct: 185 LKALITDLNARDSI-PQLEIAMGQTLPHVPDSIKSVAVIVRHMQELDD---EDLAKLRQF 240 Query: 142 LHARKYQIQLIGRANKTKICLD-RDYVDERLTVAGRTLIYRQIEN----------SFTQP 190 AR +Q+ L + + +D D LTV ++ + N FTQ Sbjct: 241 FAARNWQLFLQPKGVDSVHRIDTEDARPTSLTVPPTGGLFYHLPNFDLTYEFSPLDFTQV 300 Query: 191 NAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDR---VLAVEIAKPSVEA 246 N +N M++ + +G+ +L+L+CG GNFSLVLAR V+ VE ++ E Sbjct: 301 NLSVNQKMMDLASSLLNLQKGERVLDLFCGLGNFSLVLARQVGESGFVVGVEGSEQMTER 360 Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306 A+ N AN + + + +K+ TQ + + + RF + +DPPRSG + Sbjct: 361 AKMNACANGIAHTEFY---AKDLTQDLSDQ-------PWATGNNRFDALLIDPPRSGAWE 410 Query: 307 ATVGMVQAY------PHILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHME 357 V AY I+Y+SCNP +L RD +++ + + + D F +T H+E Sbjct: 411 -----VMAYLPKFNAKRIVYVSCNPVTLARDTKALIEAGYRLTHAGVMDMFSHTGHVE 463 >gi|229125816|ref|ZP_04254842.1| Uncharacterized RNA methyltransferase [Bacillus cereus BDRD-Cer4] gi|229143116|ref|ZP_04271549.1| Uncharacterized RNA methyltransferase [Bacillus cereus BDRD-ST24] gi|228640389|gb|EEK96786.1| Uncharacterized RNA methyltransferase [Bacillus cereus BDRD-ST24] gi|228657673|gb|EEL13485.1| Uncharacterized RNA methyltransferase [Bacillus cereus BDRD-Cer4] Length = 454 Score = 79.7 bits (195), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 47/149 (31%), Positives = 78/149 (52%), Gaps = 15/149 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G+ SL LA+ +V VEI ++E A N A N++ N + ++ Sbjct: 311 VIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFGVGEAEVVIPK 370 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330 +E + D T+ VDPPR G D+A + ++ P+ ++Y+SCNP +L R Sbjct: 371 WYKE---GVIAD---------TMVVDPPRKGCDEALLNTIIDMKPNRVVYVSCNPATLAR 418 Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMEC 358 DL +L + + + D FP+T H+EC Sbjct: 419 DLKVLEEGGYKTQEVQPVDMFPHTTHVEC 447 >gi|193215656|ref|YP_001996855.1| RNA methyltransferase, TrmA family [Chloroherpeton thalassium ATCC 35110] gi|193089133|gb|ACF14408.1| RNA methyltransferase, TrmA family [Chloroherpeton thalassium ATCC 35110] Length = 475 Score = 79.7 bits (195), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 53/178 (29%), Positives = 87/178 (48%), Gaps = 15/178 (8%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 NSF Q N+ +++ + K Q D++ +LYCG G+ S+ ++ +VL +E+ + Sbjct: 300 NSFFQTNSAQTLNLYQKTREFAKLSQDDIVYDLYCGTGSISIFISDACQKVLGIELVDSA 359 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 +E A+ N N V N + K+F + + E E L D+ + DPPR+G Sbjct: 360 IEDAKKNAERNDVKNCAFRMLDLKDFGK-ISPELEAFGLPDV---------VITDPPRAG 409 Query: 304 LDDATVGMV--QAYPHILYISCNPDSLCRDLSILSTTHTIERLAL--FDQFPYTRHME 357 + V M+ + I+Y+SCNP SL RD + + L D FP+T H+E Sbjct: 410 MHPKAVQMLLRLSPKRIVYVSCNPASLARDGQLFCENGEYQLLEAQPVDMFPHTNHIE 467 >gi|324324527|gb|ADY19787.1| RNA methyltransferase [Bacillus thuringiensis serovar finitimus YBT-020] Length = 459 Score = 79.7 bits (195), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 87/382 (22%), Positives = 168/382 (43%), Gaps = 44/382 (11%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQ------IFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63 Y++QL +K D + Q + +++ + P HYR +++ + + + ++ Sbjct: 96 YKEQLNQKRDIVVQAFEKYMKNSMEEKIRPTLGMENPWHYRNKSQLQVGRKDEKVITGLY 155 Query: 64 DQQTKERMRIDYFM-------PGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTS-QSD 115 Q + + + I + M + ++ ++ ++ +I E + + I T+ Q+ Sbjct: 156 KQNSHQLIDIAHCMIQHKATNEATKVVRRILEKLNVSIYNEKKQKGLVRTIVTRTAVQTG 215 Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175 + VTLI + + ++ + A K +Q + + I + D+ +AG Sbjct: 216 EVQVTLITTKEELPNKEQFIAEVQKQMPAVKSIMQNVNWRKTSVI-----FGDKTFKLAG 270 Query: 176 RTLIYRQIEN--------SFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGNGNFSLV 226 + +I + + +F Q N V + E AA +++ YCG G L Sbjct: 271 KEVIQETLGDLSFELSARAFFQLNPEQTVVLYNEAKKAAALTGNEKIVDAYCGVGTIGLW 330 Query: 227 LARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR-LKDI 285 LA V +++ ++ AR N + N K +A + E+ + +KD Sbjct: 331 LANDAAEVRGMDVIPEAIADARKNAKRHGFTNTKY---------EAGKAEQWLPKWVKD- 380 Query: 286 DIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCRDLSILSTTHTIER 343 +R I VDPPR+G DD + +++ P ++Y+SCNP SL RD+ L ++ +E Sbjct: 381 ---GWRPDVIVVDPPRTGCDDKLLETILKVKPKQVVYVSCNPSSLARDVQALMKSYEVEY 437 Query: 344 LALFDQFPYTRHMECGVLLVRK 365 + D FP+T H+E V LVRK Sbjct: 438 VQPVDMFPHTAHVENVVKLVRK 459 >gi|313632900|gb|EFR99843.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria seeligeri FSL N1-067] Length = 459 Score = 79.7 bits (195), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 46/152 (30%), Positives = 74/152 (48%), Gaps = 14/152 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L++ YCG G A V ++ S+E A+ N N + NV + + Sbjct: 315 LVDAYCGVGTIGQAFASKVKEVRGMDTIPESIEDAKRNAEKNGLENV---------YYEV 365 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQA-YPHILYISCNPDSLCR 330 + E F + ++ + VDPPRSG D +G ++QA ++Y+SCNP +L R Sbjct: 366 GKAEDVFPKWMK---EGFKPDAVIVDPPRSGCDQGLIGSLLQAEAKQLVYVSCNPSTLAR 422 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLL 362 DL++L+ + + + D FP T H+E VLL Sbjct: 423 DLALLAKKYRVRYMQPVDMFPQTAHVETVVLL 454 >gi|309774722|ref|ZP_07669745.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Erysipelotrichaceae bacterium 3_1_53] gi|308917495|gb|EFP63212.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Erysipelotrichaceae bacterium 3_1_53] Length = 436 Score = 79.7 bits (195), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 53/182 (29%), Positives = 88/182 (48%), Gaps = 15/182 (8%) Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 SF Q N+ V + + + K ++E Y G G SL L ++ +E K +V Sbjct: 268 SFFQLNSAQAVQLYRTIASMVKEGNELIVEAYSGIGAISLYLKDKAKEIIGIESIKDAVV 327 Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD 305 A N N +V + A + ++ + ID+ + VDPPRSGLD Sbjct: 328 NANQNAKLNGCGHVSFL------CDDAASKLTYLSKKRAIDV-------LVVDPPRSGLD 374 Query: 306 DATVGMV--QAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363 DA + + +I+Y+SCNP +L ++L++L + +E++ D FP+T ++E V L Sbjct: 375 DAMLDCILRSKIKNIVYVSCNPATLGKNLAVLGYRYNVEKIQPIDMFPHTPYVEAVVSLK 434 Query: 364 RK 365 RK Sbjct: 435 RK 436 >gi|323343147|ref|ZP_08083378.1| 23S rRNA (uracil-5-)-methyltransferase [Erysipelothrix rhusiopathiae ATCC 19414] gi|322463211|gb|EFY08406.1| 23S rRNA (uracil-5-)-methyltransferase [Erysipelothrix rhusiopathiae ATCC 19414] Length = 456 Score = 79.7 bits (195), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 50/155 (32%), Positives = 82/155 (52%), Gaps = 15/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G+ +L LA V VEI + ++ A+ N NH+ NV+ +++ Sbjct: 314 VVDAYCGIGSITLNLADKAKFVYGVEIVEDAIIMAKENAKLNHIENVQFEVGEAEKIMPT 373 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCR 330 +E +ID+ + VDPPR GLD + + + P I+Y+SCNP SL + Sbjct: 374 WVKEG-----IEIDV-------LVVDPPRKGLDPLFIDAAIASKPRRIVYVSCNPISLAK 421 Query: 331 DL-SILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 DL S + + +E++ D FP T H+E VLL++ Sbjct: 422 DLRSFIDGGYRVEKVQPVDMFPQTTHVETIVLLIK 456 >gi|228906093|ref|ZP_04069982.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis IBL 200] gi|229042217|ref|ZP_04189971.1| Uncharacterized RNA methyltransferase [Bacillus cereus AH676] gi|228727152|gb|EEL78355.1| Uncharacterized RNA methyltransferase [Bacillus cereus AH676] gi|228853502|gb|EEM98270.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis IBL 200] Length = 454 Score = 79.7 bits (195), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 47/149 (31%), Positives = 78/149 (52%), Gaps = 15/149 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G+ SL LA+ +V VEI ++E A N A N++ N + ++ Sbjct: 311 VIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFGVGEAEVVIPK 370 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330 +E + D T+ VDPPR G D+A + ++ P+ ++Y+SCNP +L R Sbjct: 371 WYKE---GVIAD---------TMVVDPPRKGCDEALLNTIIDMKPNRVVYVSCNPATLAR 418 Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMEC 358 DL +L + + + D FP+T H+EC Sbjct: 419 DLKVLEEGGYKTQEVQPVDMFPHTTHVEC 447 >gi|228956753|ref|ZP_04118539.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis serovar pakistani str. T13001] gi|228802941|gb|EEM49773.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis serovar pakistani str. T13001] Length = 455 Score = 79.7 bits (195), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 47/149 (31%), Positives = 78/149 (52%), Gaps = 15/149 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G+ SL LA+ +V VEI ++E A N A N++ N + ++ Sbjct: 311 VIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFGVGEAEVVIPK 370 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330 +E + D T+ VDPPR G D+A + ++ P+ ++Y+SCNP +L R Sbjct: 371 WYKE---GVIAD---------TMVVDPPRKGCDEALLNTIIDMKPNRVVYVSCNPATLAR 418 Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMEC 358 DL +L + + + D FP+T H+EC Sbjct: 419 DLKVLEEGGYKTQEVQPVDMFPHTTHVEC 447 >gi|218895441|ref|YP_002443852.1| RNA methyltransferase, TrmA family [Bacillus cereus G9842] gi|228899050|ref|ZP_04063323.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis IBL 4222] gi|218544636|gb|ACK97030.1| RNA methyltransferase, TrmA family [Bacillus cereus G9842] gi|228860625|gb|EEN05012.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis IBL 4222] Length = 454 Score = 79.7 bits (195), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 47/149 (31%), Positives = 78/149 (52%), Gaps = 15/149 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G+ SL LA+ +V VEI ++E A N A N++ N + ++ Sbjct: 311 VIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFGVGEAEVVIPK 370 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330 +E + D T+ VDPPR G D+A + ++ P+ ++Y+SCNP +L R Sbjct: 371 WYKE---GVIAD---------TMVVDPPRKGCDEALLNTIIDMKPNRVVYVSCNPATLAR 418 Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMEC 358 DL +L + + + D FP+T H+EC Sbjct: 419 DLKVLEEGGYKTQEVQPVDMFPHTTHVEC 447 >gi|306820595|ref|ZP_07454224.1| 23S rRNA (uracil-5-)-methyltransferase [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304551326|gb|EFM39288.1| 23S rRNA (uracil-5-)-methyltransferase [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 452 Score = 79.7 bits (195), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 67/225 (29%), Positives = 109/225 (48%), Gaps = 22/225 (9%) Query: 149 IQLIGRANKTKICLDRD----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA 204 IQ I + N T + L D Y ++ +T L ++ NSF Q N M L Sbjct: 240 IQNINKKN-TNVILSSDNILLYGNDYITEYIDDLKFKIYPNSFFQVNYTQMEKMYNKALD 298 Query: 205 ATKGIQGDLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVR 263 + D++ +LYCG G SL+LA+ V +E+ + S+ +A+ N N++ NV+ + Sbjct: 299 YASIDKDDVVYDLYCGIGTISLLLAKRAKYVYGIEVVQQSITSAKENARENNIENVEFIC 358 Query: 264 MSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYI 321 + +A+ + + K DI I +DP R G + + + + I+YI Sbjct: 359 GKVENEIKALIK-----KAKSPDI-------IVLDPARKGCEVTVLDTILSVSPKKIVYI 406 Query: 322 SCNPDSLCRDLSIL--STTHTIERLALFDQFPYTRHMECGVLLVR 364 SCNP +L RDL IL S + +E + FD F ++ H+E VLL + Sbjct: 407 SCNPSTLARDLKILLDSGKYILEEVTPFDLFCHSTHIENVVLLSK 451 >gi|283795951|ref|ZP_06345104.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium sp. M62/1] gi|291076596|gb|EFE13960.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium sp. M62/1] Length = 461 Score = 79.7 bits (195), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 50/156 (32%), Positives = 73/156 (46%), Gaps = 15/156 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +L+ YCG G + + RV+ VE+ + +V A N N + N++ + F Sbjct: 315 VLDAYCGIGTIGITASGRAGRVIGVELNRDAVRDAVQNAKRNEIKNIEFYCNDAGRFMSR 374 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330 M + E R +F+DPPRSG + + QA P ++YISC P++L R Sbjct: 375 MAADGE------------RLDVVFMDPPRSGSTEEFIQAAAQAGPRTVVYISCGPETLAR 422 Query: 331 DLSILSTTHTIERLAL-FDQFPYTRHMECGVLLVRK 365 DL + R A D FP+T H EC V L RK Sbjct: 423 DLRVFEKKGYKAREAWPVDLFPWTGHCECVVKLERK 458 >gi|169634355|ref|YP_001708091.1| 23S rRNA 5-methyluridine methyltransferase [Acinetobacter baumannii SDF] gi|226725375|sp|B0VKL3|RUMA_ACIBS RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|169153147|emb|CAP02232.1| 23S rRNA (Uracil-5-)-methyltransferase(23S rRNA(M-5-U1939)-methyltransferase) [Acinetobacter baumannii] Length = 463 Score = 79.7 bits (195), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 58/191 (30%), Positives = 98/191 (51%), Gaps = 32/191 (16%) Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDR---VLAVEIAKP 242 FTQ NA +N M++ + QG+ +L+L+CG GNFSL LAR ++ VE ++ Sbjct: 286 FTQVNATVNEQMVQLACELLQLQQGERVLDLFCGLGNFSLPLARCVGAKGVIVGVEASEE 345 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDP 299 V+ A N+ N++ + + F+Q + KD HS+ F + +DP Sbjct: 346 MVQRATDNVKRNNL-------VQASFFSQDL--------TKDFSHHSWANQGFDALLIDP 390 Query: 300 PRSGLDDATVGMVQAYPH-----ILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYT 353 PR+G + ++Q P+ I+Y+SCNP +L RD +L + +++ A+ D F +T Sbjct: 391 PRAGAYE----IIQYVPNFGAKRIVYVSCNPATLARDAGVLVQHGYQLKKAAVMDMFTHT 446 Query: 354 RHMECGVLLVR 364 H+E L + Sbjct: 447 EHVESIALFEK 457 >gi|116491644|ref|YP_811188.1| tRNA (uracil-5-)-methyltransferase related enzyme [Oenococcus oeni PSU-1] gi|290891253|ref|ZP_06554315.1| hypothetical protein AWRIB429_1705 [Oenococcus oeni AWRIB429] gi|116092369|gb|ABJ57523.1| tRNA (uracil-5-)-methyltransferase related enzyme [Oenococcus oeni PSU-1] gi|290479217|gb|EFD87879.1| hypothetical protein AWRIB429_1705 [Oenococcus oeni AWRIB429] Length = 458 Score = 79.7 bits (195), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 91/374 (24%), Positives = 159/374 (42%), Gaps = 42/374 (11%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFRS----EPIHYRMRAEFHIWHDGDDLYHIMFDQ 65 Y QL K ++RQ+ + +L+I + P HYR + + L + + Sbjct: 95 YPAQLEFKRKQIRQLFHKVGIDDLEILPTLGMKNPTHYRNKTVVPVKFQAGKLVTGFYRR 154 Query: 66 QTKERMRI-DYFMPGSLL----------INALMIEMMATIRLEPLLRAKLFQIDYLTSQS 114 + + + I DY++ + +N I I E ++R + + Y + Q+ Sbjct: 155 GSHKLVPIEDYYLNDPKIDVVVGIARDVLNDFHISAYNEISREGIVRYLMVRHGYHSGQT 214 Query: 115 DQAIVTLIYHRLLD-DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTV 173 A+V H + + +E R+ D + + + ++ LD + + V Sbjct: 215 MLAVVATKKHLPHEKEIIKEINQRIPDL---TSFLLNYNPKQTNVQLGLDNRVLSGQ-QV 270 Query: 174 AGRTLIYRQIE---NSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLA 228 TL+ E NSF Q N +L A G++ + +++ Y G G L +A Sbjct: 271 IHDTLLGLDFEIGINSFYQVNPQTTA-VLYTKAAELAGLKSNQLVIDAYSGIGTIGLSIA 329 Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288 R +V+ VE+ P+VE A+ N+ AN + N + + + E +F + D + Sbjct: 330 RQVRKVIGVEVVVPAVEDAKKNMLANRIENAEYIAADAAE---------QFIKWADAGV- 379 Query: 289 SYRFKTIFVDPPRSGLDDATVGM--VQAYPHILYISCNPDSLCRDLSILST-THTIERLA 345 + +FVDPPR GL + V A +YISCNP +L RD ++ + I + Sbjct: 380 --KPDVVFVDPPRKGLTSDLIQSLGVMAPLKFVYISCNPATLARDAVLIKEQGYRISKAV 437 Query: 346 L-FDQFPYTRHMEC 358 L DQFP T H+E Sbjct: 438 LPIDQFPQTMHVES 451 >gi|169334084|ref|ZP_02861277.1| hypothetical protein ANASTE_00477 [Anaerofustis stercorihominis DSM 17244] gi|169258801|gb|EDS72767.1| hypothetical protein ANASTE_00477 [Anaerofustis stercorihominis DSM 17244] Length = 450 Score = 79.7 bits (195), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 56/215 (26%), Positives = 104/215 (48%), Gaps = 25/215 (11%) Query: 155 ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-- 212 A++ KI RDY+ E+ L ++ SF Q N + +L V+ G + Sbjct: 256 ADEVKIIYGRDYIMEKCL----GLDFKISAFSFFQTNT-LGSEVLYSVVKDFIGEEKSDV 310 Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +L+LYCG G + +L+ + V +EI + ++EAA+ N N+++N + + Sbjct: 311 ILDLYCGTGTITQILSDKANEVYGIEIVEEAIEAAKINAELNNIDNCRFICG-------- 362 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330 + L+++D + I +DPPR+G+ + + ++ +Y+SC SL R Sbjct: 363 -------DVLEEVDKIDVKSDLIILDPPRAGIHPKAIDKIISFKPKKFVYVSCKATSLIR 415 Query: 331 DLS-ILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 DL + + ++++ D FP T H+E VLL + Sbjct: 416 DLPFFIEAGYEVDKVRAVDMFPQTGHVETVVLLTK 450 >gi|119475990|ref|ZP_01616342.1| hypothetical protein GP2143_05355 [marine gamma proteobacterium HTCC2143] gi|119450617|gb|EAW31851.1| hypothetical protein GP2143_05355 [marine gamma proteobacterium HTCC2143] Length = 458 Score = 79.7 bits (195), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 56/189 (29%), Positives = 88/189 (46%), Gaps = 28/189 (14%) Query: 185 NSFTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240 + FTQ N IN + ++W+ K I D +CG GNFSL ++ R + E Sbjct: 282 DDFTQVNPAINHRLVALTIKWLQLGEKDIVADF---FCGIGNFSLPISTFVARTVGFEWV 338 Query: 241 KPSVEAARYNIAANHVNNV--KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298 V+ AR N NH++N K++ +++ + +FN+ +D Sbjct: 339 ASMVDKARSNAVFNHIDNCEFKVIDLTADRLVI----DEDFNKA-------------LLD 381 Query: 299 PPRSGLDDATVGMVQA-YPHILYISCNPDSLCRDLSILS-TTHTIERLALFDQFPYTRHM 356 PPR+G + + ++ I+YISCNP +L RD IL+ + + L+L D FP T H Sbjct: 382 PPRAGAEKICKQLAESKLERIVYISCNPRTLARDSKILTQGNYQLTELSLADMFPQTVHS 441 Query: 357 ECGVLLVRK 365 E L R Sbjct: 442 EVVALFTRS 450 >gi|229077678|ref|ZP_04210308.1| Uncharacterized RNA methyltransferase [Bacillus cereus Rock4-2] gi|228705619|gb|EEL57975.1| Uncharacterized RNA methyltransferase [Bacillus cereus Rock4-2] Length = 454 Score = 79.7 bits (195), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 47/149 (31%), Positives = 78/149 (52%), Gaps = 15/149 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G+ SL LA+ +V VEI ++E A N A N++ N + ++ Sbjct: 311 VIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFGVGEAEVVIPK 370 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330 +E + D T+ VDPPR G D+A + ++ P+ ++Y+SCNP +L R Sbjct: 371 WYKE---GVIAD---------TMVVDPPRKGCDEALLNTIIDMKPNRVVYVSCNPATLAR 418 Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMEC 358 DL +L + + + D FP+T H+EC Sbjct: 419 DLKVLEEGGYKTQEVQPVDMFPHTTHVEC 447 >gi|206967682|ref|ZP_03228638.1| RNA methyltransferase, TrmA family [Bacillus cereus AH1134] gi|206736602|gb|EDZ53749.1| RNA methyltransferase, TrmA family [Bacillus cereus AH1134] Length = 454 Score = 79.7 bits (195), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 47/149 (31%), Positives = 78/149 (52%), Gaps = 15/149 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G+ SL LA+ +V VEI ++E A N A N++ N + ++ Sbjct: 311 VIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFGVGEAEVVIPK 370 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330 +E + D T+ VDPPR G D+A + ++ P+ ++Y+SCNP +L R Sbjct: 371 WYKE---GVIAD---------TMVVDPPRKGCDEALLNTIIDMKPNRVVYVSCNPATLAR 418 Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMEC 358 DL +L + + + D FP+T H+EC Sbjct: 419 DLKVLEEGGYKTQEVQPVDMFPHTTHVEC 447 >gi|56962873|ref|YP_174600.1| S-adenosylmethionine (SAM)-dependent methyltransferase [Bacillus clausii KSM-K16] gi|56909112|dbj|BAD63639.1| S-adenosylmethionine (SAM)-dependent methyltransferase [Bacillus clausii KSM-K16] Length = 458 Score = 79.7 bits (195), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 52/154 (33%), Positives = 76/154 (49%), Gaps = 15/154 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G SL LA+ V VEI +++ A+ N N + N ++E Sbjct: 314 VIDAYCGIGTISLFLAKKARHVYGVEIVPEAIKDAKRNAKLNQITNATFAVGEAEEVI-- 371 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330 R ++ D D+ I VDPPR G D+A + M++ P I+Y+SCNP +L R Sbjct: 372 ---PRWHDQGIDADV-------IVVDPPRKGCDEALLRTMMEMKPKRIVYVSCNPGTLAR 421 Query: 331 DLSILS-TTHTIERLALFDQFPYTRHMECGVLLV 363 DL IL + E + D FP T H+E LV Sbjct: 422 DLRILEDGGYKTEEVTPVDMFPQTTHVEAVARLV 455 >gi|229107991|ref|ZP_04237618.1| Uncharacterized RNA methyltransferase [Bacillus cereus Rock1-15] gi|228675494|gb|EEL30711.1| Uncharacterized RNA methyltransferase [Bacillus cereus Rock1-15] Length = 454 Score = 79.7 bits (195), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 47/149 (31%), Positives = 78/149 (52%), Gaps = 15/149 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G+ SL LA+ +V VEI ++E A N A N++ N + ++ Sbjct: 311 VIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFGVGEAEVVIPK 370 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330 +E + D T+ VDPPR G D+A + ++ P+ ++Y+SCNP +L R Sbjct: 371 WYKE---GVIAD---------TMVVDPPRKGCDEALLNTIIDMKPNRVVYVSCNPATLAR 418 Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMEC 358 DL +L + + + D FP+T H+EC Sbjct: 419 DLKVLEEGGYKTQEVQPVDMFPHTTHVEC 447 >gi|28199269|ref|NP_779583.1| 23S rRNA 5-methyluridine methyltransferase [Xylella fastidiosa Temecula1] gi|32130010|sp|Q87BR3|RUMA_XYLFT RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|28057375|gb|AAO29232.1| RNA methyltransferase [Xylella fastidiosa Temecula1] gi|307578259|gb|ADN62228.1| 23S rRNA 5-methyluridine methyltransferase [Xylella fastidiosa subsp. fastidiosa GB514] Length = 443 Score = 79.7 bits (195), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 56/184 (30%), Positives = 88/184 (47%), Gaps = 18/184 (9%) Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLA 236 ++R ++ F Q N G+N M+ L G+ +L+L+CG GNF+L LAR V+ Sbjct: 266 FVFRPLD--FIQINGGLNEKMIAHALDLLGAGFGERVLDLFCGLGNFTLPLARTVGEVVG 323 Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296 VE VE AR N N + N + F + R++ +D F + Sbjct: 324 VEGDIGLVERARENARRNGLGNAEF-------FVADLTRDQ-----RDAPWMRQGFDKLL 371 Query: 297 VDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDLSILSTTH--TIERLALFDQFPYT 353 +DPPRSG + + ++ + I+Y+SC+P SL RD L + + D FP+T Sbjct: 372 LDPPRSGAIEVLKQLPLKMFERIVYVSCHPGSLARDADFLVNEQGFVLRAVGAMDMFPHT 431 Query: 354 RHME 357 H+E Sbjct: 432 AHVE 435 >gi|295090952|emb|CBK77059.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium cf. saccharolyticum K10] Length = 461 Score = 79.7 bits (195), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 50/156 (32%), Positives = 73/156 (46%), Gaps = 15/156 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +L+ YCG G + + RV+ VE+ + +V A N N + N++ + F Sbjct: 315 VLDAYCGIGTIGITASGRAGRVIGVELNRDAVRDAVQNAKRNEIKNIEFYCNDAGRFMSR 374 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330 M + E R +F+DPPRSG + + QA P ++YISC P++L R Sbjct: 375 MAADGE------------RLDVVFMDPPRSGSTEEFIQAAAQAGPRTVVYISCGPETLAR 422 Query: 331 DLSILSTTHTIERLAL-FDQFPYTRHMECGVLLVRK 365 DL + R A D FP+T H EC V L RK Sbjct: 423 DLRVFEKKGYKAREAWPVDLFPWTGHCECVVKLERK 458 >gi|229009816|ref|ZP_04167036.1| Uncharacterized RNA methyltransferase [Bacillus mycoides DSM 2048] gi|228751434|gb|EEM01240.1| Uncharacterized RNA methyltransferase [Bacillus mycoides DSM 2048] Length = 465 Score = 79.7 bits (195), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 49/155 (31%), Positives = 80/155 (51%), Gaps = 17/155 (10%) Query: 209 IQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266 + GD +++ YCG G+ SL LA+ +V VEI ++E A N A N++ N + + Sbjct: 316 LNGDETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFGVGEA 375 Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCN 324 + +E + D T+ VDPPR G D+A + ++ P ++Y+SCN Sbjct: 376 EVVIPKWYKE---GVIAD---------TMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCN 423 Query: 325 PDSLCRDLSIL-STTHTIERLALFDQFPYTRHMEC 358 P +L RDL +L + + + D FP+T H+EC Sbjct: 424 PATLARDLKVLEEGGYKTQEVQPVDMFPHTTHVEC 458 >gi|30018572|ref|NP_830203.1| tRNA (Uracil-5-) -methyltransferase [Bacillus cereus ATCC 14579] gi|296501148|ref|YP_003662848.1| tRNA (Uracil-5-)-methyltransferase [Bacillus thuringiensis BMB171] gi|50401538|sp|Q814A6|Y364_BACCR RecName: Full=Uncharacterized RNA methyltransferase BC_0364 gi|29894113|gb|AAP07404.1| tRNA (Uracil-5-) -methyltransferase [Bacillus cereus ATCC 14579] gi|296322200|gb|ADH05128.1| tRNA (Uracil-5-)-methyltransferase [Bacillus thuringiensis BMB171] Length = 458 Score = 79.7 bits (195), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 47/149 (31%), Positives = 78/149 (52%), Gaps = 15/149 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G+ SL LA+ +V VEI ++E A N A N++ N + ++ Sbjct: 315 VIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFGVGEAEVVIPK 374 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330 +E + D T+ VDPPR G D+A + ++ P+ ++Y+SCNP +L R Sbjct: 375 WYKE---GVIAD---------TMVVDPPRKGCDEALLNTIIDMKPNRVVYVSCNPATLAR 422 Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMEC 358 DL +L + + + D FP+T H+EC Sbjct: 423 DLKVLEEGGYKTQEVQPVDMFPHTTHVEC 451 >gi|71276134|ref|ZP_00652414.1| tRNA (uracil-5-)-methyltransferase/TrmA [Xylella fastidiosa Dixon] gi|71900087|ref|ZP_00682230.1| tRNA (uracil-5-)-methyltransferase/TrmA [Xylella fastidiosa Ann-1] gi|71163052|gb|EAO12774.1| tRNA (uracil-5-)-methyltransferase/TrmA [Xylella fastidiosa Dixon] gi|71730169|gb|EAO32257.1| tRNA (uracil-5-)-methyltransferase/TrmA [Xylella fastidiosa Ann-1] Length = 468 Score = 79.7 bits (195), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 56/184 (30%), Positives = 88/184 (47%), Gaps = 18/184 (9%) Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLA 236 ++R ++ F Q N G+N M+ L G+ +L+L+CG GNF+L LAR V+ Sbjct: 291 FVFRPLD--FIQINGGLNEKMIAHALDLLGAGFGERVLDLFCGLGNFTLPLARTVGEVVG 348 Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296 VE VE AR N N + N + F + R++ +D F + Sbjct: 349 VEGDIGLVERARENARRNGLGNAEF-------FVADLTRDQ-----RDAPWMRQGFDKLL 396 Query: 297 VDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDLSILSTTH--TIERLALFDQFPYT 353 +DPPRSG + + ++ + I+Y+SC+P SL RD L + + D FP+T Sbjct: 397 LDPPRSGAIEVLKQLPLKMFERIVYVSCHPGSLARDADFLVNEQGFVLRAVGAMDMFPHT 456 Query: 354 RHME 357 H+E Sbjct: 457 AHVE 460 >gi|21230734|ref|NP_636651.1| 23S rRNA 5-methyluridine methyltransferase [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66769270|ref|YP_244032.1| 23S rRNA 5-methyluridine methyltransferase [Xanthomonas campestris pv. campestris str. 8004] gi|23822130|sp|Q8PB48|RUMA_XANCP RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|81304771|sp|Q4USG1|RUMA_XANC8 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|21112328|gb|AAM40575.1| RNA methyltransferase [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66574602|gb|AAY50012.1| RNA methyltransferase [Xanthomonas campestris pv. campestris str. 8004] Length = 444 Score = 79.7 bits (195), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 59/184 (32%), Positives = 88/184 (47%), Gaps = 18/184 (9%) Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLA 236 L +R ++ F Q NA +N M+ LA D +L+L+CG GNF+L LAR V+ Sbjct: 267 LAFRPLD--FIQVNASLNQKMIAHALALLDAKPDDRVLDLFCGLGNFTLPLARTVREVVG 324 Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296 VE V AR N N ++N + + + TQ R+ + F + Sbjct: 325 VEGDAGLVARARENAQRNGLDNAQFY---AADLTQDQRQTAWMRQ---------GFDKLL 372 Query: 297 VDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDLSILSTTHTIERLA--LFDQFPYT 353 +DPPRSG D + ++ + I+Y+SC+P SL RD L L+ D FP+T Sbjct: 373 LDPPRSGAIDVLQQLPLKQFKRIVYVSCHPGSLARDAGYLVNEQGFSLLSAGAMDMFPHT 432 Query: 354 RHME 357 H+E Sbjct: 433 AHVE 436 >gi|307244221|ref|ZP_07526336.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Peptostreptococcus stomatis DSM 17678] gi|306492371|gb|EFM64409.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Peptostreptococcus stomatis DSM 17678] Length = 544 Score = 79.7 bits (195), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 48/159 (30%), Positives = 83/159 (52%), Gaps = 16/159 (10%) Query: 210 QGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268 +GD + ++YCG G SL LA+ + V VEI + +++ AR N N ++N++ ++E Sbjct: 305 EGDRVFDIYCGIGTISLFLAQKAEFVYGVEIVEDAIKDARLNAKLNGMDNLEFFVGKAEE 364 Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPD 326 + +E + + VDPPR G D+ + +V+ P ++Y+SCNP Sbjct: 365 VVPEIYKE------------GKKANVVVVDPPRKGCDERVLDTIVEMEPDRVVYVSCNPS 412 Query: 327 SLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364 +L RDL L + E++ D FP++ H+E LL + Sbjct: 413 TLARDLRYLEDRGYRCEKVQPVDLFPHSVHVETVALLSK 451 >gi|300118952|ref|ZP_07056663.1| RNA methyltransferase, TrmA family protein [Bacillus cereus SJ1] gi|298723568|gb|EFI64299.1| RNA methyltransferase, TrmA family protein [Bacillus cereus SJ1] Length = 458 Score = 79.7 bits (195), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 47/149 (31%), Positives = 77/149 (51%), Gaps = 15/149 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G+ SL LA+ +V VEI ++E A+ N A N + N + ++ Sbjct: 315 VIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDAKRNAALNDMTNAEFGVGEAEVVIPK 374 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330 +E + D T+ VDPPR G D+A + ++ P ++Y+SCNP +L R Sbjct: 375 WYKE---GVIAD---------TMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLAR 422 Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMEC 358 DL +L + + + D FP+T H+EC Sbjct: 423 DLKVLEEGGYKTQEVQPVDMFPHTTHVEC 451 >gi|298715093|emb|CBJ27781.1| RNA methyltransferase, TrmA family [Ectocarpus siliculosus] Length = 516 Score = 79.7 bits (195), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 55/196 (28%), Positives = 95/196 (48%), Gaps = 21/196 (10%) Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNFS 224 +V ER V G ++ E F Q N + HM+++V+A A +G +L++ YCG G F Sbjct: 326 HVSER--VGGMVFNFKAGE--FFQNNPYVLPHMVDYVVARAKEGGAKNLIDAYCGGGLFC 381 Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284 L + F++ +EI+ +V+ A N A N ++N + ++ N + Sbjct: 382 LSASTSFEKCAGIEISPMAVDCATRNAATNDISNCLFLAGTAS------------NIFAN 429 Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLS-ILSTTHTI 341 + + VDPPR G D +G + + ++Y+SC+P + RD I++ + Sbjct: 430 VSFTPSE-TVVIVDPPRKGCDQLFLGQLFKFRPTRLVYVSCDPATQARDAKEIMANGYEA 488 Query: 342 ERLALFDQFPYTRHME 357 + FD FP TRH+E Sbjct: 489 VDIQPFDLFPQTRHIE 504 >gi|291521671|emb|CBK79964.1| 23S rRNA m(5)U-1939 methyltransferase [Coprococcus catus GD/7] Length = 458 Score = 79.7 bits (195), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 53/165 (32%), Positives = 84/165 (50%), Gaps = 16/165 (9%) Query: 205 ATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRM 264 A G + +LYCG G SL +A+ +V VEI +++ A+ N A N ++N + Sbjct: 304 ANPGPNDVIWDLYCGIGTISLFMAKKAKQVYGVEIVPQAIDDAKRNAAINDIHNAEFYVG 363 Query: 265 SSKE-FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYPH-ILYI 321 ++E Q RE IH+ I VDPPR G D++ + + Q P ++Y+ Sbjct: 364 KAEEVLPQTYEREH---------IHA---DIIVVDPPRKGCDESLLACITQMQPKRVVYV 411 Query: 322 SCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVRK 365 SC+P +L RDL L + ++ + D F ++ H+E VLL RK Sbjct: 412 SCDPATLARDLKYLEERDYKVKEVQCVDMFGHSVHVETVVLLQRK 456 >gi|269115232|ref|YP_003302995.1| hypothetical protein MHO_4570 [Mycoplasma hominis] gi|268322857|emb|CAX37592.1| Conserved hypothetical protein, putative RNAmethyltransferase [Mycoplasma hominis ATCC 23114] Length = 443 Score = 79.7 bits (195), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 54/191 (28%), Positives = 94/191 (49%), Gaps = 33/191 (17%) Query: 177 TLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLA 236 +LIY QI+ Q N+ TK ++++Y G G+ + + + ++ Sbjct: 283 SLIYNQIKKFIDQENS-------------TK-----IIDVYSGVGSIGISVCGNDSQLEL 324 Query: 237 VEIAKPSVEAARYNIAANHVNN--VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294 +EI K + E A+ NI N +N V I+ S+++F ++E E+ + Sbjct: 325 IEINKSACECAKININQNLINPKLVDIINSSAQDFFN--KKEAEY----------FEKSI 372 Query: 295 IFVDPPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTT-HTIERLALFDQFPYT 353 + DPPR+GL + + M++ ++Y+SCNP ++ RDL + IERL +D FP T Sbjct: 373 VIFDPPRTGLTNKEINMLEKCNSVIYMSCNPHTMIRDLKYFEEKGYRIERLIPYDMFPQT 432 Query: 354 RHMECGVLLVR 364 H+E LL + Sbjct: 433 YHIEMLSLLKK 443 >gi|89897939|ref|YP_515049.1| tRNA/rRNA methyltransferase [Chlamydophila felis Fe/C-56] gi|89331311|dbj|BAE80904.1| tRNA/rRNA methyltransferase [Chlamydophila felis Fe/C-56] Length = 401 Score = 79.7 bits (195), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 59/207 (28%), Positives = 108/207 (52%), Gaps = 20/207 (9%) Query: 166 YVDERLTVA--GRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG--DLLELYCGNG 221 ++ + LT+ G + ++ SF QP + ++E + QG LL+LYCG G Sbjct: 205 FIKQTLTLPKDGNSGVFHVRPRSFFQPQSLQGAKIIE-IAKEFMDPQGCETLLDLYCGAG 263 Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281 ++L+ + +V+ VEI +VE+A+ NI N ++ V + ++ RR ++ Sbjct: 264 TIGIMLSTYVKKVIGVEIVPDAVESAKENILINKKEHLMEVHL--EDVKNFCRRHQD--- 318 Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCRD-LSILSTT 338 D+ + +DPPR G+ + + +++ P I+YISCNP ++ S+LS Sbjct: 319 CPPPDV-------VVIDPPRCGMQNKVLKYLLRISPKKIIYISCNPKIQFKECCSLLSAG 371 Query: 339 HTIERLALFDQFPYTRHMECGVLLVRK 365 + I+++ DQFP++ H+E +LL RK Sbjct: 372 YRIKKVQPLDQFPHSPHLENIILLERK 398 >gi|283471167|emb|CAQ50378.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus subsp. aureus ST398] Length = 453 Score = 79.7 bits (195), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 46/152 (30%), Positives = 70/152 (46%), Gaps = 14/152 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +L+ YCG G L +A H V VE+ ++E A+ N N NN V ++E Sbjct: 311 VLDTYCGTGTIGLYMAPHAKHVYGVEVVPSAIEDAQQNATINQCNNTTFVCGKAEEVILQ 370 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330 + + + + VDPPR G D+ + ++ P I+YISCNP + R Sbjct: 371 WKAQ------------GIKPDVVMVDPPRKGCDETFIQTLLTLEPKRIVYISCNPATQQR 418 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLL 362 D +LS + +E + D FP T H+E L Sbjct: 419 DALLLSEKYQLEEVTPVDMFPQTTHVETVALF 450 >gi|153004375|ref|YP_001378700.1| (Uracil-5)-methyltransferase [Anaeromyxobacter sp. Fw109-5] gi|152027948|gb|ABS25716.1| (Uracil-5)-methyltransferase [Anaeromyxobacter sp. Fw109-5] Length = 482 Score = 79.7 bits (195), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 59/189 (31%), Positives = 90/189 (47%), Gaps = 16/189 (8%) Query: 179 IYRQIENSFTQPNAGINVHMLEWVL--AATKGIQGDLLELYCGNGNFSLVLARHFDRVLA 236 + R + F Q N G N ++ L A G+ D+LEL+CG GNF+ LA V A Sbjct: 304 VQRSRPDVFQQANRGANALLVRAALDLLAPDGL--DVLELHCGAGNFTGPLAARARWVAA 361 Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296 VE+ P++E AR ++A NV+ + + A RE + + RF Sbjct: 362 VEVQGPALELARADLAG--AGNVRFFAGDALKLALAFAREGGPS--------ARRFGAAL 411 Query: 297 VDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTR 354 +DPPR G + + P +Y+SC+P + RD+ + + T +E + D FP T Sbjct: 412 LDPPREGAKGIGPALRELGLPRTVYVSCDPATFARDVRACVETGFRLEAVQPVDMFPQTH 471 Query: 355 HMECGVLLV 363 H+E LLV Sbjct: 472 HVEAVALLV 480 >gi|332710474|ref|ZP_08430421.1| 23S rRNA m(5)U-1939 methyltransferase [Lyngbya majuscula 3L] gi|332350805|gb|EGJ30398.1| 23S rRNA m(5)U-1939 methyltransferase [Lyngbya majuscula 3L] Length = 461 Score = 79.7 bits (195), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 50/154 (32%), Positives = 74/154 (48%), Gaps = 19/154 (12%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G F+L LA+ + + +E+ SVE A N N + NVK S + Sbjct: 321 VVDAYCGIGTFTLPLAQQVSQAIGIEVQAASVEQAEQNALINGITNVKFQAGSVDQLLP- 379 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYPH-ILYISCNPDSLCR 330 + DI I +DPPR G A + ++ Q P I+YISCNP +L R Sbjct: 380 -----QLTIAPDI---------ILLDPPRKGCSPAVIDILRQVAPKRIVYISCNPATLAR 425 Query: 331 DLSI--LSTTHTIERLALFDQFPYTRHMECGVLL 362 DL + L+ + + + D FP T H+EC L Sbjct: 426 DLKLLCLNGDYQLTHIQPADFFPQTSHVECAAFL 459 >gi|330980189|gb|EGH78360.1| 23S rRNA m(5)U1939 methyltransferase [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 427 Score = 79.7 bits (195), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 57/184 (30%), Positives = 90/184 (48%), Gaps = 21/184 (11%) Query: 185 NSFTQPNAGINVHMLE----WVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240 F Q NA +N M+E W LA K + +++L+CG GNF+L LA V+AVE Sbjct: 255 GDFIQVNAAVNTAMIEQAMQW-LAPAKDER--VMDLFCGLGNFALPLAGLAREVVAVEGV 311 Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300 VE A N +N ++NV+ + + +Q L D + F + +DPP Sbjct: 312 ATMVERAAVNAMSNDLHNVQFFQ---ADLSQP---------LAHADWAAEGFSAVLLDPP 359 Query: 301 RSGLDDATVGMVQAYP-HILYISCNPDSLCRD-LSILSTTHTIERLALFDQFPYTRHMEC 358 R G + + + +LY+SCNP +L RD + ++ + ++R + D FP T H+E Sbjct: 360 RDGAFEVVRQIRKTGARRLLYVSCNPATLARDAVELIRQGYRLKRAGILDMFPQTAHVEA 419 Query: 359 GVLL 362 L Sbjct: 420 MALF 423 >gi|320535233|ref|ZP_08035358.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Treponema phagedenis F0421] gi|320147924|gb|EFW39415.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Treponema phagedenis F0421] Length = 537 Score = 79.7 bits (195), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 62/188 (32%), Positives = 98/188 (52%), Gaps = 17/188 (9%) Query: 181 RQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEI 239 R +NSF Q N+ + + + + + I+ D ++E Y G G + V A+ F +V A+EI Sbjct: 270 RASQNSFMQVNSEVRDLLYKDAINIIEEIKTDTIIEGYSGIGIMTNVFAKQFKKVYAIEI 329 Query: 240 AKPSVEAARYNIAANHVNNVKI-VRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298 +VE A YN N+ NN+K ++KE ++ + +E + +F D Sbjct: 330 DPEAVEDAEYNRKLNNNNNIKNICGDAAKEISKIINAVKE------------NYALVF-D 376 Query: 299 PPRSGLDDATVGMVQ-AYPH-ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHM 356 PPR GLD + ++ + P I YISC+ +L RD S L +TIE+L +D FP T H+ Sbjct: 377 PPRKGLDKKIIDAIKKSKPKTIFYISCDSATLARDYSYLKDLYTIEKLLCYDMFPQTSHV 436 Query: 357 ECGVLLVR 364 E LL + Sbjct: 437 ETVALLSK 444 >gi|302388260|ref|YP_003824082.1| RNA methyltransferase, TrmA family [Clostridium saccharolyticum WM1] gi|302198888|gb|ADL06459.1| RNA methyltransferase, TrmA family [Clostridium saccharolyticum WM1] Length = 454 Score = 79.7 bits (195), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 58/190 (30%), Positives = 90/190 (47%), Gaps = 17/190 (8%) Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQG--DLLELYCGNGNFSLVLARHFDRVLAV 237 YR SF Q N + L A G+ G + +LYCG G SL LA+ +V V Sbjct: 276 YRISPLSFYQVNP-VQTEKLYGTALAYAGLTGVETVWDLYCGIGTISLFLAQKAKKVYGV 334 Query: 238 EIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFV 297 EI ++E AR N N ++NV+ ++E + + H I V Sbjct: 335 EIVPQAIEDARENARLNGLDNVEFFVGKAEEVLP-----------EQYEKHQVYADVIVV 383 Query: 298 DPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCRDLSILS-TTHTIERLALFDQFPYTR 354 DPPR G D+A + +V+ P ++Y+SC+ +L RD+ L+ + +E++ D FP Sbjct: 384 DPPRKGCDEACLNTIVKMGPKRVVYVSCDSATLARDMKYLAENGYKVEKVRGCDMFPQAL 443 Query: 355 HMECGVLLVR 364 H E L+V+ Sbjct: 444 HTEVCCLIVK 453 >gi|266619611|ref|ZP_06112546.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium hathewayi DSM 13479] gi|288868833|gb|EFD01132.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium hathewayi DSM 13479] Length = 458 Score = 79.7 bits (195), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 60/191 (31%), Positives = 93/191 (48%), Gaps = 17/191 (8%) Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAV 237 YR SF Q N + L G+ G + +LYCG G SL LA+ +V V Sbjct: 278 YRISPLSFYQVNP-VQTEKLYSTALEYAGLTGGETVWDLYCGIGTISLFLAQKAKKVYGV 336 Query: 238 EIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFV 297 EI +++ AR N N + NV+ ++E + RE E N++ I V Sbjct: 337 EIVPQAIDDARENARINGMENVEFFVGKAEE---VLPREYEKNQV--------YADVIVV 385 Query: 298 DPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTR 354 DPPR G D+ + +V+ P ++Y+SC+ +L RD+ L+ + + ++ D FP++ Sbjct: 386 DPPRKGCDEVCLDTIVKMGPKRVVYVSCDSATLARDMKYLAERGYEVVKVRGCDMFPHST 445 Query: 355 HMECGVLLVRK 365 H EC V L RK Sbjct: 446 HTECCVKLERK 456 >gi|188992421|ref|YP_001904431.1| 23S rRNA 5-methyluridine methyltransferase [Xanthomonas campestris pv. campestris str. B100] gi|167734181|emb|CAP52389.1| RNA methyltransferase [Xanthomonas campestris pv. campestris] Length = 470 Score = 79.7 bits (195), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 59/184 (32%), Positives = 88/184 (47%), Gaps = 18/184 (9%) Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLA 236 L +R ++ F Q NA +N M+ LA D +L+L+CG GNF+L LAR V+ Sbjct: 293 LAFRPLD--FIQVNASLNQKMIAHALALLDAKPDDRVLDLFCGLGNFTLPLARTVREVVG 350 Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296 VE V AR N N ++N + + + TQ R+ + F + Sbjct: 351 VEGDAGLVARARENAQRNGLDNAQFY---AADLTQDQRQTAWMRQ---------GFDKLL 398 Query: 297 VDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDLSILSTTHTIERLA--LFDQFPYT 353 +DPPRSG D + ++ + I+Y+SC+P SL RD L L+ D FP+T Sbjct: 399 LDPPRSGAIDVLQQLPLKQFKRIVYVSCHPGSLARDAGYLVNEQGFSLLSAGAMDMFPHT 458 Query: 354 RHME 357 H+E Sbjct: 459 AHVE 462 >gi|326561885|gb|EGE12220.1| 23S rRNA 5-methyluridine methyltransferase [Moraxella catarrhalis 7169] gi|326563319|gb|EGE13586.1| 23S rRNA 5-methyluridine methyltransferase [Moraxella catarrhalis 46P47B1] gi|326565973|gb|EGE16134.1| 23S rRNA 5-methyluridine methyltransferase [Moraxella catarrhalis 103P14B1] gi|326568893|gb|EGE18962.1| 23S rRNA 5-methyluridine methyltransferase [Moraxella catarrhalis BC1] gi|326575378|gb|EGE25303.1| 23S rRNA 5-methyluridine methyltransferase [Moraxella catarrhalis 101P30B1] Length = 497 Score = 79.7 bits (195), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 80/298 (26%), Positives = 136/298 (45%), Gaps = 42/298 (14%) Query: 83 INALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH-RLLDDAWRECAIRLRDA 141 + AL+ ++ A + P L + Q S +++ ++ H + LDD E +LR Sbjct: 209 LKALITDLNARDSI-PQLEIAMGQTLPHVPDSIKSVAVIVRHMQELDD---EDLAKLRQF 264 Query: 142 LHARKYQIQLIGRANKTKICLD-RDYVDERLTVAGRTLIYRQIEN----------SFTQP 190 AR +Q+ L + + +D D LTV ++ + N FTQ Sbjct: 265 FAARNWQLFLQPKGVDSVHRIDTEDARPTSLTVPPTGGLFYHLPNFDLTYEFSPLDFTQV 324 Query: 191 NAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDR---VLAVEIAKPSVEA 246 N +N M++ + +G+ +L+L+CG GNFSLVLAR V+ VE ++ E Sbjct: 325 NLSVNQKMMDLASSLLNLQKGERVLDLFCGLGNFSLVLARQVGESGFVVGVEGSEQMTER 384 Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306 A+ N AN + + + +K+ TQ + + + RF + +DPPRSG + Sbjct: 385 AKMNACANGIAHTEFY---AKDLTQDLSDQ-------PWATGNNRFDALLIDPPRSGAWE 434 Query: 307 ATVGMVQAY------PHILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHME 357 V AY I+Y+SCNP +L RD +++ + + + D F +T H+E Sbjct: 435 -----VMAYLPKFNAKRIVYVSCNPVTLARDTKALIEAGYRLTHAGVMDMFSHTGHVE 487 >gi|326578005|gb|EGE27869.1| 23S rRNA 5-methyluridine methyltransferase [Moraxella catarrhalis O35E] Length = 497 Score = 79.3 bits (194), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 80/298 (26%), Positives = 136/298 (45%), Gaps = 42/298 (14%) Query: 83 INALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH-RLLDDAWRECAIRLRDA 141 + AL+ ++ A + P L + Q S +++ ++ H + LDD E +LR Sbjct: 209 LKALITDLNARDSI-PQLEIAMGQTLPHVPDSIKSVAVIVRHMQELDD---EDLAKLRQF 264 Query: 142 LHARKYQIQLIGRANKTKICLD-RDYVDERLTVAGRTLIYRQIEN----------SFTQP 190 AR +Q+ L + + +D D LTV ++ + N FTQ Sbjct: 265 FAARNWQLFLQPKGVDSVHRIDTEDARPTSLTVPPTGGLFYHLPNFDLTYEFSPLDFTQV 324 Query: 191 NAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDR---VLAVEIAKPSVEA 246 N +N M++ + +G+ +L+L+CG GNFSLVLAR V+ VE ++ E Sbjct: 325 NLSVNQKMMDLASSLLNLQKGERVLDLFCGLGNFSLVLARQVGESGFVVGVEGSEQMTER 384 Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306 A+ N AN + + + +K+ TQ + + + RF + +DPPRSG + Sbjct: 385 AKMNACANGIAHTEFY---AKDLTQDLSDQ-------PWATGNNRFDALLIDPPRSGAWE 434 Query: 307 ATVGMVQAY------PHILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHME 357 V AY I+Y+SCNP +L RD +++ + + + D F +T H+E Sbjct: 435 -----VMAYLPKFNAKRIVYVSCNPVTLARDTKALIEAGYRLTHAGVMDMFSHTGHVE 487 >gi|194707300|gb|ACF87734.1| unknown [Zea mays] Length = 360 Score = 79.3 bits (194), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 63/215 (29%), Positives = 94/215 (43%), Gaps = 34/215 (15%) Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD----LLELYCGNG 221 Y +T R L ++ NSF Q N +L ++ + G++GD +L+L+CG G Sbjct: 159 YGKPNITEMLRGLAFQISANSFFQTNTK-QADVLYKLIEDSAGLKGDGSEIVLDLFCGTG 217 Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281 L AR + E+ ++E AR N N +NN V+ + ++ +E Sbjct: 218 TIGLTFARRAKHIYGYEVVPEAIEDARKNAKLNGINNATFVQGDLNKINESFGKE----- 272 Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGM---VQAYPHILYISCNPDSLCRDLSILSTT 338 DI I DP R G+ + V+A P I+Y+SCNP + RDL L Sbjct: 273 FPKPDI-------IISDPNRPGMHMKLIKWLLEVKA-PRIVYVSCNPATCARDLDYLC-- 322 Query: 339 HTIERLAL-----------FDQFPYTRHMECGVLL 362 H +E L D FP+T H+EC LL Sbjct: 323 HGVEEKDLRGFYELKSVIPVDMFPHTPHIECVCLL 357 >gi|156846955|ref|XP_001646363.1| hypothetical protein Kpol_2001p6 [Vanderwaltozyma polyspora DSM 70294] gi|156117039|gb|EDO18505.1| hypothetical protein Kpol_2001p6 [Vanderwaltozyma polyspora DSM 70294] Length = 589 Score = 79.3 bits (194), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 51/160 (31%), Positives = 81/160 (50%), Gaps = 21/160 (13%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L++ YCG+G FS+ ++ D+V+ VEI+ SV A N N ++N + + Sbjct: 442 LVDCYCGSGLFSICSSKGVDKVIGVEISADSVSFAEKNAKNNGIDNCRFI---------V 492 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330 + E+ F + ID+ R ++ +DPPR G D+ + + +Y I+YISCN S R Sbjct: 493 GKAEKLF---ESIDVPKDR-TSVILDPPRKGCDELFLTQLSSYFPAKIVYISCNVHSQAR 548 Query: 331 DLSIL------STTHTIERLALFDQFPYTRHMECGVLLVR 364 D+ + + IE L FD FP T H+E +L R Sbjct: 549 DVEFFLKNTENGSHYKIESLRGFDFFPQTHHVESVCVLSR 588 >gi|218281544|ref|ZP_03487973.1| hypothetical protein EUBIFOR_00538 [Eubacterium biforme DSM 3989] gi|218217333|gb|EEC90871.1| hypothetical protein EUBIFOR_00538 [Eubacterium biforme DSM 3989] Length = 457 Score = 79.3 bits (194), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 49/153 (32%), Positives = 74/153 (48%), Gaps = 15/153 (9%) Query: 214 LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273 +E Y G G SL + ++ VE + +V+ A N NH +NV + + + Sbjct: 292 VEAYSGIGAISLFVKDKAQEIIGVESIQDAVDNANENAMLNHADNVSFICEDAGSALAHL 351 Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRD 331 +E KD+D T+ VDPPRSGLDD + ++Y+SCNP +L +D Sbjct: 352 VQE------KDVD-------TLIVDPPRSGLDDTMKETILKSKIKTMIYVSCNPATLAKD 398 Query: 332 LSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 L +L + I ++ D F T H+E LLVR Sbjct: 399 LGVLKKEYRIVKIQPVDMFSQTPHVESVTLLVR 431 >gi|149278953|ref|ZP_01885087.1| putative RNA methyltransferase [Pedobacter sp. BAL39] gi|149230232|gb|EDM35617.1| putative RNA methyltransferase [Pedobacter sp. BAL39] Length = 487 Score = 79.3 bits (194), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 61/207 (29%), Positives = 94/207 (45%), Gaps = 24/207 (11%) Query: 169 ERLTVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGDLL--ELYC 218 E LT AGR I+ ++ SF Q N+ H L + G GD L +LY Sbjct: 278 EVLTYAGRDHIFEEMNGLKFKIGAKSFYQTNSN-QAHELYKITKEFAGFSGDELVYDLYT 336 Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278 G G + +AR +V+ VE ++E A++N N + N K+ R+ Sbjct: 337 GAGTIANFVARSVKQVVGVEYVPTAIEDAKFNSKLNGIENTIFYAGDMKDILT-----RD 391 Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG--MVQAYPHILYISCNPDSLCRDLSILS 336 F I H + + DPPR+G+ V + I+Y+SCN + RDL++L Sbjct: 392 F-----IAEHG-KPDVVITDPPRAGMHADVVERLLEMEAEKIVYVSCNAATQARDLALLK 445 Query: 337 TTHTIERLALFDQFPYTRHMECGVLLV 363 + + R+ D FP+T+H+E VLL Sbjct: 446 EKYEVTRIKPVDMFPHTQHVENVVLLT 472 >gi|71898365|ref|ZP_00680538.1| tRNA (uracil-5-)-methyltransferase/TrmA [Xylella fastidiosa Ann-1] gi|182681995|ref|YP_001830155.1| 23S rRNA 5-methyluridine methyltransferase [Xylella fastidiosa M23] gi|71731888|gb|EAO33946.1| tRNA (uracil-5-)-methyltransferase/TrmA [Xylella fastidiosa Ann-1] gi|182632105|gb|ACB92881.1| RNA methyltransferase, TrmA family [Xylella fastidiosa M23] Length = 468 Score = 79.3 bits (194), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 56/184 (30%), Positives = 88/184 (47%), Gaps = 18/184 (9%) Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLA 236 ++R ++ F Q N G+N M+ L G+ +L+L+CG GNF+L LAR V+ Sbjct: 291 FVFRPLD--FIQINGGLNEKMIAHALDLLGAGFGERVLDLFCGLGNFTLPLARTVGEVVG 348 Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296 VE VE AR N N + N + F + R++ +D F + Sbjct: 349 VEGDIGLVERARENARRNGLGNAEF-------FVADLTRDQ-----RDAPWMRQGFDKLL 396 Query: 297 VDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDLSILSTTH--TIERLALFDQFPYT 353 +DPPRSG + + ++ + I+Y+SC+P SL RD L + + D FP+T Sbjct: 397 LDPPRSGAIEVLKQLPLKMFERIVYVSCHPGSLARDADFLVNEQGFVLRAVGAMDMFPHT 456 Query: 354 RHME 357 H+E Sbjct: 457 AHVE 460 >gi|331005378|ref|ZP_08328762.1| RNA methyltransferase, TrmA family [gamma proteobacterium IMCC1989] gi|330420832|gb|EGG95114.1| RNA methyltransferase, TrmA family [gamma proteobacterium IMCC1989] Length = 493 Score = 79.3 bits (194), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 63/221 (28%), Positives = 94/221 (42%), Gaps = 30/221 (13%) Query: 167 VDERLTVA---GRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGN 222 VD RL L++R F Q N IN M+E +A ++ ++LYCG GN Sbjct: 229 VDPRLEYVLPLASPLLFRFHPQDFIQSNPSINQKMVEQAIALLAPQSHEIVMDLYCGIGN 288 Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV----------KIVRMSSKEFTQ- 271 FSL LA H VLAVE + A N N +NNV K++R S + Q Sbjct: 289 FSLPLALHAKHVLAVEGVEAMTIRAADNAHCNGINNVTFITQDLSQPKLLRASVSAYCQK 348 Query: 272 -------AMRREREFNRLKDIDIHSYR------FKTIFVDPPRSGLDDATVGMVQAYPH- 317 A + +D + + + +DPPR+G + + P Sbjct: 349 QDAFQSAAQPITQSITSTAQVDSSTKKPAKQGVIDALLLDPPRAGAKTICENIAELLPQR 408 Query: 318 ILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHME 357 I+Y+SC+ + RD +L + + L + D FP T H+E Sbjct: 409 IVYVSCDSSTFARDAGLLVDNGYRLSTLGIMDMFPQTSHVE 449 >gi|253988311|ref|YP_003039667.1| 23S rRNA 5-methyluridine methyltransferase [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253779761|emb|CAQ82922.1| 23S rRNA (uracil-5-)-methyltransferase [Photorhabdus asymbiotica] Length = 443 Score = 79.3 bits (194), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 56/190 (29%), Positives = 93/190 (48%), Gaps = 25/190 (13%) Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIA 240 F Q N +N M +EW+ +Q + +L+L+CG GNF+L +AR V+ VE Sbjct: 270 FIQVNETVNQQMVAQAMEWL-----DLQPNDRVLDLFCGMGNFTLPIARKVQAVVGVEGV 324 Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300 V +YN N+++N+ E +A ++ + +L F + +DP Sbjct: 325 ATLVANGQYNAKLNNLDNISFYH----ENLEANIHQQPWAKLG--------FNKVLLDPA 372 Query: 301 RSGLDDATVGMVQAYPH-ILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHMEC 358 R+G +V+ P ++Y+SCNP +L RD ++L + I + + D FP+T H+E Sbjct: 373 RAGAAGVMSHIVKLAPEKVVYVSCNPTTLARDSKTLLEAGYHIISVRMLDMFPHTGHLES 432 Query: 359 GVLLVRKPSG 368 VL R G Sbjct: 433 MVLFSRIDCG 442 >gi|229021911|ref|ZP_04178475.1| Uncharacterized RNA methyltransferase [Bacillus cereus AH1272] gi|228739383|gb|EEL89815.1| Uncharacterized RNA methyltransferase [Bacillus cereus AH1272] Length = 465 Score = 79.3 bits (194), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 47/149 (31%), Positives = 77/149 (51%), Gaps = 15/149 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G+ SL LA+ +V VEI ++E A N A N++ N + ++ Sbjct: 322 VIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFGVGEAEVVIPK 381 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330 +E + D T+ VDPPR G D+A + ++ P ++Y+SCNP +L R Sbjct: 382 WYKE---GVIAD---------TMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLAR 429 Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMEC 358 DL +L + + + D FP+T H+EC Sbjct: 430 DLKVLEEGGYKTQEVQPVDMFPHTTHVEC 458 >gi|226323301|ref|ZP_03798819.1| hypothetical protein COPCOM_01073 [Coprococcus comes ATCC 27758] gi|225208491|gb|EEG90845.1| hypothetical protein COPCOM_01073 [Coprococcus comes ATCC 27758] Length = 455 Score = 79.3 bits (194), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 68/234 (29%), Positives = 104/234 (44%), Gaps = 25/234 (10%) Query: 137 RLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINV 196 +L LH + + + TKI +DY E L L ++ SF Q N+ + Sbjct: 240 KLAGILHTTNNSLADVVKDEGTKILYGQDYFYEELL----GLKFKITPFSFFQTNS-LGA 294 Query: 197 HMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAAN 254 +L + G D + +LY G G + +LA +V+ VEI + +VEAA+ N A N Sbjct: 295 EVLYEAARSYIGETKDKVIFDLYSGTGTIAQILAPVAKKVVGVEIVEEAVEAAKENAALN 354 Query: 255 HVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA 314 ++N + LK ID I +DPPR G+ + + Sbjct: 355 GLDNCTFWAG---------------DVLKVIDDLGEVPDLIVLDPPRDGVHPKALEKIID 399 Query: 315 Y--PHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVRK 365 + ++YI+C P SL RDL +L + +ER+ D FP T H+E LL RK Sbjct: 400 FGVERMVYIACKPTSLARDLELLQGRGYQVERIGCVDLFPSTYHVETVCLLSRK 453 >gi|256028670|ref|ZP_05442504.1| tRNA (Uracil-5-) -methyltransferase [Fusobacterium sp. D11] gi|289766583|ref|ZP_06525961.1| tRNA (Uracil-5-)-methyltransferase [Fusobacterium sp. D11] gi|289718138|gb|EFD82150.1| tRNA (Uracil-5-)-methyltransferase [Fusobacterium sp. D11] Length = 456 Score = 79.3 bits (194), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 40/149 (26%), Positives = 75/149 (50%), Gaps = 15/149 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ Y G G +++++ +V A+EI K + E N + N++ + + Sbjct: 308 IVDAYSGTGTIGMIMSKKAKKVYAIEIVKSASEDGEKTAKENGIENIEFINGAV------ 361 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCR 330 E+E +L + ++ + TI DPPR GL+ + + V ++YISCNP + R Sbjct: 362 ---EKELVKLIN---NNQKIDTIIFDPPRKGLEASIIDKVAELNLKEVVYISCNPSTFAR 415 Query: 331 DLSILSTT-HTIERLALFDQFPYTRHMEC 358 D+ + S + +++L D FP T H+EC Sbjct: 416 DIKLFSEKGYVLKKLQAVDMFPQTSHIEC 444 >gi|225376462|ref|ZP_03753683.1| hypothetical protein ROSEINA2194_02104 [Roseburia inulinivorans DSM 16841] gi|225211838|gb|EEG94192.1| hypothetical protein ROSEINA2194_02104 [Roseburia inulinivorans DSM 16841] Length = 475 Score = 79.3 bits (194), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 60/197 (30%), Positives = 93/197 (47%), Gaps = 11/197 (5%) Query: 174 AGRTLIYRQIENSFTQ--PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF 231 G+ + Y SF Q P ++ L A G + + +LYCG G SL LA Sbjct: 283 TGKAISYHISPQSFYQVNPEQTEKLYSLALEYAGLTGKE-SVWDLYCGIGTISLFLAGKA 341 Query: 232 DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291 V VEI ++ A+ N N +N + ++E E + N D+ +H Sbjct: 342 GHVYGVEIVPQAIADAKDNAKRNGFSNTEFFVGKAEEVLPEFYAEHK-NEKTDM-LHP-- 397 Query: 292 FKTIFVDPPRSGLDDATVG--MVQAYPHILYISCNPDSLCRDLSILS-TTHTIERLALFD 348 I VDPPR G D+ + ++ I+Y+SC+ +L RDL +L+ + ++R+ D Sbjct: 398 -DVIVVDPPRKGCDEKCLETILLMKPERIVYVSCDSATLARDLKVLAEGGYEVKRVRAVD 456 Query: 349 QFPYTRHMECGVLLVRK 365 QF +T H+EC LL RK Sbjct: 457 QFAHTTHVECVTLLQRK 473 >gi|262158318|ref|ZP_06029435.1| RNA methyltransferase TrmA family [Vibrio cholerae INDRE 91/1] gi|262030000|gb|EEY48647.1| RNA methyltransferase TrmA family [Vibrio cholerae INDRE 91/1] Length = 315 Score = 79.3 bits (194), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 47/155 (30%), Positives = 77/155 (49%), Gaps = 18/155 (11%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + +L+CG G F+L A V +EI ++ +A+ + ++N+ + S +F+Q+ Sbjct: 177 MWDLFCGVGGFALHCAAPDTAVTGIEIEPEAIASAQRSAQMMGIDNLSFAALDSAKFSQS 236 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCR 330 E + V+PPR GL ++A +ILY SCNP ++ + Sbjct: 237 QMSAPEL---------------VLVNPPRRGLGSELTAQLEALAPKYILYSSCNPQTMVK 281 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 D++ LS+ I R+ FD FP+T H E LLVRK Sbjct: 282 DIAELSSYQMI-RVQWFDMFPHTDHAEVLTLLVRK 315 >gi|229131321|ref|ZP_04260222.1| Uncharacterized RNA methyltransferase [Bacillus cereus BDRD-ST196] gi|228652142|gb|EEL08078.1| Uncharacterized RNA methyltransferase [Bacillus cereus BDRD-ST196] Length = 465 Score = 79.3 bits (194), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 47/149 (31%), Positives = 77/149 (51%), Gaps = 15/149 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G+ SL LA+ +V VEI ++E A N A N++ N + ++ Sbjct: 322 VIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFGVGEAEVVIPK 381 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330 +E + D T+ VDPPR G D+A + ++ P ++Y+SCNP +L R Sbjct: 382 WYKE---GVIAD---------TMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLAR 429 Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMEC 358 DL +L + + + D FP+T H+EC Sbjct: 430 DLKVLEEGGYKTQEVQPVDMFPHTTHVEC 458 >gi|226494722|ref|NP_001143116.1| hypothetical protein LOC100275594 [Zea mays] gi|224031061|gb|ACN34606.1| unknown [Zea mays] Length = 558 Score = 79.3 bits (194), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 63/215 (29%), Positives = 94/215 (43%), Gaps = 34/215 (15%) Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD----LLELYCGNG 221 Y +T R L ++ NSF Q N +L ++ + G++GD +L+L+CG G Sbjct: 357 YGKPNITEMLRGLAFQISANSFFQTNTK-QADVLYKLIEDSAGLKGDGSEIVLDLFCGTG 415 Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281 L AR + E+ ++E AR N N +NN V+ + ++ +E Sbjct: 416 TIGLTFARRAKHIYGYEVVPEAIEDARKNAKLNGINNATFVQGDLNKINESFGKE----- 470 Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGM---VQAYPHILYISCNPDSLCRDLSILSTT 338 DI I DP R G+ + V+A P I+Y+SCNP + RDL L Sbjct: 471 FPKPDI-------IISDPNRPGMHMKLIKWLLEVKA-PRIVYVSCNPATCARDLDYLC-- 520 Query: 339 HTIERLAL-----------FDQFPYTRHMECGVLL 362 H +E L D FP+T H+EC LL Sbjct: 521 HGVEEKDLRGFYELKSVIPVDMFPHTPHIECVCLL 555 >gi|228950875|ref|ZP_04112998.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228808804|gb|EEM55300.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 454 Score = 79.3 bits (194), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 47/149 (31%), Positives = 77/149 (51%), Gaps = 15/149 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G+ SL LA+ +V VEI ++E A N A N++ N + ++ Sbjct: 311 VIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFGVGEAEVVIPK 370 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330 +E + D T+ VDPPR G D+A + ++ P ++Y+SCNP +L R Sbjct: 371 WYKE---GVIAD---------TMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLAR 418 Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMEC 358 DL +L + + + D FP+T H+EC Sbjct: 419 DLKVLEEGGYKTQEVQPVDMFPHTTHVEC 447 >gi|229015714|ref|ZP_04172696.1| Uncharacterized RNA methyltransferase [Bacillus cereus AH1273] gi|228745571|gb|EEL95591.1| Uncharacterized RNA methyltransferase [Bacillus cereus AH1273] Length = 458 Score = 79.3 bits (194), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 47/149 (31%), Positives = 77/149 (51%), Gaps = 15/149 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G+ SL LA+ +V VEI ++E A N A N++ N + ++ Sbjct: 315 VIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFGVGEAEVVIPK 374 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330 +E + D T+ VDPPR G D+A + ++ P ++Y+SCNP +L R Sbjct: 375 WYKE---GVIAD---------TMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLAR 422 Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMEC 358 DL +L + + + D FP+T H+EC Sbjct: 423 DLKVLEEGGYKTQEVQPVDMFPHTTHVEC 451 >gi|195127973|ref|XP_002008441.1| GI11815 [Drosophila mojavensis] gi|193920050|gb|EDW18917.1| GI11815 [Drosophila mojavensis] Length = 597 Score = 79.3 bits (194), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 51/187 (27%), Positives = 90/187 (48%), Gaps = 20/187 (10%) Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251 AG +V + + A + +L++ CG G +L A+H +VL VEI +++ A +N Sbjct: 391 AGADVLYQQAIDLAAPNQETIMLDICCGTGTIALAFAKHCKQVLGVEIVPDAIKDAEHNA 450 Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRL--KDIDIHSYRFKTIFVDPPRSGLDDATV 309 N + N K ++ ++ ++M RE + + K ID+ VDPPR+GL ++ Sbjct: 451 ETNGIKNCKFFTGNADDYIKSMVREAVYGQEPGKPIDL------IAVVDPPRAGLHTRSI 504 Query: 310 GMVQAYPHI---LYISCNPDSLCRDLSILSTTHTIE---------RLALFDQFPYTRHME 357 +++ I +Y+SCNP+S R+ L+ + + D FP+T H E Sbjct: 505 AAIRSASDIKRLVYVSCNPNSAKRNFIELARPESKQYKGEPFYPKTAVAVDMFPHTTHTE 564 Query: 358 CGVLLVR 364 +L R Sbjct: 565 LVILFER 571 >gi|315224184|ref|ZP_07866024.1| 23S rRNA (uracil-5-)-methyltransferase [Capnocytophaga ochracea F0287] gi|314945917|gb|EFS97926.1| 23S rRNA (uracil-5-)-methyltransferase [Capnocytophaga ochracea F0287] Length = 471 Score = 79.3 bits (194), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 64/216 (29%), Positives = 96/216 (44%), Gaps = 26/216 (12%) Query: 163 DRDYVDERLTVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGDLL 214 D Y E + G IY ++E SF Q N+ + L V ++GD L Sbjct: 265 DAIYDQELICYKGTDCIYEEMEGLRFKINAKSFYQTNSA-QAYKLYQVARNFADLKGDEL 323 Query: 215 --ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE-FTQ 271 +LY G G + +A+ +V+ VE ++ A+ N AN + NV K F Sbjct: 324 VYDLYTGTGTIAQFVAKKAKKVIGVEAVPEAITDAKDNAFANGIENVTFYVGDMKNIFND 383 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL-DDATVGMVQAYPH-ILYISCNPDSLC 329 E N D+ I DPPR G+ D ++Q P I+Y+SCN + Sbjct: 384 TFIEE---NGTPDV---------IITDPPRDGMHKDVVAKILQIAPKKIVYVSCNSATQA 431 Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 RDLS+L T+ + ++ D FP T H+E VLL ++ Sbjct: 432 RDLSLLDVTYKVTKVQPVDMFPQTYHVENVVLLEKR 467 >gi|47569584|ref|ZP_00240262.1| RNA methyltransferase, TrmA family [Bacillus cereus G9241] gi|47553767|gb|EAL12140.1| RNA methyltransferase, TrmA family [Bacillus cereus G9241] Length = 458 Score = 79.3 bits (194), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 47/149 (31%), Positives = 77/149 (51%), Gaps = 15/149 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G+ SL LA+ +V VEI ++E A N A N++ N + ++ Sbjct: 315 VIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFGVGEAEVVIPK 374 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330 +E + D T+ VDPPR G D+A + ++ P ++Y+SCNP +L R Sbjct: 375 WYKE---GVIAD---------TMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLAR 422 Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMEC 358 DL +L + + + D FP+T H+EC Sbjct: 423 DLKVLEEGGYKTQEVQPVDMFPHTTHVEC 451 >gi|329117144|ref|ZP_08245861.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus parauberis NCFD 2020] gi|326907549|gb|EGE54463.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus parauberis NCFD 2020] Length = 451 Score = 79.3 bits (194), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 85/385 (22%), Positives = 156/385 (40%), Gaps = 52/385 (13%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFR-------SEPIHYRMRAEFHIWHDGDDLYHIM 62 Y +QL K D +RQ + F+ + + EP HYR + +F G + + Sbjct: 90 YPKQLVFKTDVIRQALKKFKPEGYESYPIRETLGMDEPWHYRAKLQFQTRQFGGKIRAGL 149 Query: 63 FDQQTKERMRIDYFM----PGSLLINALM---------------IEMMATIRLEPLLRAK 103 F + + + I+ + L+IN+++ I+ + T+ + + +K Sbjct: 150 FAENSHHLVTIENCLVQDKDTQLVINSIVKLLDKHKLPIFNERKIDGLRTVMIRKAVASK 209 Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD 163 Q+ +TS++ L ++D +E + AL+ K + I T+I Sbjct: 210 KIQVILITSKA------LRLTDFINDLVKEHPQIMTIALNHNKSKSSDI-YGESTEIIWG 262 Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGN 222 D ++E + +L R +F Q N + + + A + D +++ YCG G Sbjct: 263 EDKIEEEVLDYQFSLSPR----AFYQLNPKQTQVLYQEIKNALQVTATDHIIDAYCGVGT 318 Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282 A + ++I ++ A+ N + N ++E + Sbjct: 319 IGFAFANQVASIRGMDIVPEAIADAKQNAQDLAIVNTLYETGKAEEIIPKWYQS------ 372 Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTTHT 340 YR I VDPPR+GLDD + + Y ++Y+SCN +L RDL L+ + Sbjct: 373 ------GYRADAIIVDPPRTGLDDKLLQTIITYQPEKMVYVSCNTSTLARDLVSLTKVYK 426 Query: 341 IERLALFDQFPYTRHMECGVLLVRK 365 +E + D FP+T E V L +K Sbjct: 427 VEYIQSVDMFPHTARTEAVVKLTKK 451 >gi|229159469|ref|ZP_04287487.1| Uncharacterized RNA methyltransferase [Bacillus cereus R309803] gi|228624040|gb|EEK80848.1| Uncharacterized RNA methyltransferase [Bacillus cereus R309803] Length = 465 Score = 79.3 bits (194), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 47/149 (31%), Positives = 77/149 (51%), Gaps = 15/149 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G+ SL LA+ +V VEI ++E A N A N++ N + ++ Sbjct: 322 VIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFGVGEAEVVIPK 381 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330 +E + D T+ VDPPR G D+A + ++ P ++Y+SCNP +L R Sbjct: 382 WYKE---GVIAD---------TMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLAR 429 Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMEC 358 DL +L + + + D FP+T H+EC Sbjct: 430 DLKVLEEGGYKTQEVQPVDMFPHTTHVEC 458 >gi|229028174|ref|ZP_04184315.1| Uncharacterized RNA methyltransferase [Bacillus cereus AH1271] gi|228733122|gb|EEL83963.1| Uncharacterized RNA methyltransferase [Bacillus cereus AH1271] Length = 465 Score = 79.3 bits (194), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 47/149 (31%), Positives = 77/149 (51%), Gaps = 15/149 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G+ SL LA+ +V VEI ++E A N A N++ N + ++ Sbjct: 322 VIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFGVGEAEVVIPK 381 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330 +E + D T+ VDPPR G D+A + ++ P ++Y+SCNP +L R Sbjct: 382 WYKE---GVIAD---------TMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLAR 429 Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMEC 358 DL +L + + + D FP+T H+EC Sbjct: 430 DLKVLEEGGYKTQEVQPVDMFPHTTHVEC 458 >gi|163938323|ref|YP_001643207.1| RNA methyltransferase [Bacillus weihenstephanensis KBAB4] gi|163860520|gb|ABY41579.1| RNA methyltransferase, TrmA family [Bacillus weihenstephanensis KBAB4] Length = 458 Score = 79.3 bits (194), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 47/149 (31%), Positives = 77/149 (51%), Gaps = 15/149 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G+ SL LA+ +V VEI ++E A N A N++ N + ++ Sbjct: 315 VIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFGVGEAEVVIPK 374 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330 +E + D T+ VDPPR G D+A + ++ P ++Y+SCNP +L R Sbjct: 375 WYKE---GVIAD---------TMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLAR 422 Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMEC 358 DL +L + + + D FP+T H+EC Sbjct: 423 DLKVLEEGGYKTQEVQPVDMFPHTTHVEC 451 >gi|322517378|ref|ZP_08070253.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus vestibularis ATCC 49124] gi|322124075|gb|EFX95628.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus vestibularis ATCC 49124] Length = 451 Score = 79.3 bits (194), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 85/386 (22%), Positives = 157/386 (40%), Gaps = 52/386 (13%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPNLQIFR-------SEPIHYRMRAEFHIWHDGDDLYHI 61 +Y++QL K D L Q + F+ N + + +P HYR + +F G + Sbjct: 88 RYDKQLEFKTDLLGQALKKFKPANFESYEIRQTIGMEQPQHYRAKLQFQTRSFGGSVKAG 147 Query: 62 MFDQQTKERMRIDYFMPGSLLINALM-------------------IEMMATIRLEPLLRA 102 +F + + + ID + L A+M I + T+ + L + Sbjct: 148 LFAEGSHRLINIDDCLVQDELTQAMMNKVTSLLDKYKLPIYNERKISGIRTVMIRRALGS 207 Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162 Q+ ++TS+S ++ L+ L + E + +++ +I +T+I Sbjct: 208 NQVQLIFVTSKS-VSLTKLVKELTL--RYPEIVTVAINYNYSKSSEIY----GQETEIIW 260 Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNG 221 +D + E + L R +F Q N + + A + + + L++ YCG G Sbjct: 261 GQDTIQEEVLDYNFALSPR----AFYQLNPKQTEVLYSQAVEALEVDKDEHLIDAYCGVG 316 Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281 L A + ++I ++E AR N + + N +++ +E Sbjct: 317 TIGLAFANKVKSIRGMDIIPEAIEDARKNAKSLGLGNTHYEVGKAEDIIPRWYKE----- 371 Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILSTTH 339 YR + VDPPR+GLDD + + Y ++Y+SCN +L RDL L+ + Sbjct: 372 -------GYRADALIVDPPRTGLDDKLLKTILDYTPEKMVYVSCNVSTLARDLVSLAKVY 424 Query: 340 TIERLALFDQFPYTRHMECGVLLVRK 365 + + D FP+T E V L +K Sbjct: 425 DVNYIQSVDMFPHTARTEAVVKLTKK 450 >gi|258648401|ref|ZP_05735870.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella tannerae ATCC 51259] gi|260851571|gb|EEX71440.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella tannerae ATCC 51259] Length = 473 Score = 79.3 bits (194), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 58/206 (28%), Positives = 98/206 (47%), Gaps = 26/206 (12%) Query: 172 TVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNG 221 T +G IY Q+E+ SF Q N+ L V+ + G+ + +LY G G Sbjct: 279 TYSGTDCIYEQMEDLQFKIGPKSFYQTNSE-QAFTLYKVVREFANLSGNEYVYDLYTGTG 337 Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281 + +A RV+ +E +++ A+ N N+++N++ K+ Sbjct: 338 TIANFIAGKAKRVIGIEYVPEAIKDAKENAVLNNLDNIQFFAGDMKDI------------ 385 Query: 282 LKDIDIHSY-RFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILSTT 338 L D + Y R I DPPR+G+ + + + A I+Y+SCNP + RD+S+LST Sbjct: 386 LTDDFVALYGRPDVIITDPPRAGMHNDVISTILFAAPKRIVYVSCNPATQARDVSLLSTD 445 Query: 339 HTIERLALFDQFPYTRHMECGVLLVR 364 + I ++ D FP T H+E +L+ R Sbjct: 446 YHITKVQPVDMFPQTHHVENVLLMER 471 >gi|229095036|ref|ZP_04226032.1| Uncharacterized RNA methyltransferase [Bacillus cereus Rock3-29] gi|229113989|ref|ZP_04243415.1| Uncharacterized RNA methyltransferase [Bacillus cereus Rock1-3] gi|228669448|gb|EEL24864.1| Uncharacterized RNA methyltransferase [Bacillus cereus Rock1-3] gi|228688366|gb|EEL42248.1| Uncharacterized RNA methyltransferase [Bacillus cereus Rock3-29] Length = 458 Score = 79.3 bits (194), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 47/149 (31%), Positives = 77/149 (51%), Gaps = 15/149 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G+ SL LA+ +V VEI ++E A N A N++ N + ++ Sbjct: 315 VIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFGVGEAEVVIPK 374 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330 +E + D T+ VDPPR G D+A + ++ P ++Y+SCNP +L R Sbjct: 375 WYKE---GVIAD---------TMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLAR 422 Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMEC 358 DL +L + + + D FP+T H+EC Sbjct: 423 DLKVLEEGGYKTQEVQPVDMFPHTTHVEC 451 >gi|229176912|ref|ZP_04304308.1| Uncharacterized RNA methyltransferase [Bacillus cereus 172560W] gi|228606585|gb|EEK64010.1| Uncharacterized RNA methyltransferase [Bacillus cereus 172560W] Length = 454 Score = 79.3 bits (194), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 47/149 (31%), Positives = 77/149 (51%), Gaps = 15/149 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G+ SL LA+ +V VEI ++E A N A N++ N + ++ Sbjct: 311 VIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFGVGEAEVVIPK 370 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330 +E + D T+ VDPPR G D+A + ++ P ++Y+SCNP +L R Sbjct: 371 WYKE---GVIAD---------TMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLAR 418 Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMEC 358 DL +L + + + D FP+T H+EC Sbjct: 419 DLKVLEEGGYKTQEVQPVDMFPHTTHVEC 447 >gi|256820983|ref|YP_003142262.1| RNA methyltransferase, TrmA family [Capnocytophaga ochracea DSM 7271] gi|256582566|gb|ACU93701.1| RNA methyltransferase, TrmA family [Capnocytophaga ochracea DSM 7271] Length = 471 Score = 79.3 bits (194), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 64/216 (29%), Positives = 96/216 (44%), Gaps = 26/216 (12%) Query: 163 DRDYVDERLTVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGDLL 214 D Y E + G IY ++E SF Q N+ + L V ++GD L Sbjct: 265 DAIYDQELICYKGTDCIYEEMEGLRFKINAKSFYQTNSA-QAYKLYQVARNFADLKGDEL 323 Query: 215 --ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE-FTQ 271 +LY G G + +A+ +V+ VE ++ A+ N AN + NV K F Sbjct: 324 VYDLYTGTGTIAQFVAKKAKKVIGVEAVPEAIADAKDNAFANGIENVTFYVGDMKNIFND 383 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL-DDATVGMVQAYPH-ILYISCNPDSLC 329 E N D+ I DPPR G+ D ++Q P I+Y+SCN + Sbjct: 384 TFIEE---NGTPDV---------IITDPPRDGMHKDVVAKILQIAPKKIVYVSCNSATQA 431 Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 RDLS+L T+ + ++ D FP T H+E VLL ++ Sbjct: 432 RDLSLLDVTYKVTKVQPVDMFPQTYHVENVVLLEKR 467 >gi|229165298|ref|ZP_04293085.1| Uncharacterized RNA methyltransferase [Bacillus cereus AH621] gi|228618123|gb|EEK75161.1| Uncharacterized RNA methyltransferase [Bacillus cereus AH621] Length = 459 Score = 79.3 bits (194), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 47/149 (31%), Positives = 77/149 (51%), Gaps = 15/149 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G+ SL LA+ +V VEI ++E A N A N++ N + ++ Sbjct: 315 VIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFGVGEAEVVIPK 374 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330 +E + D T+ VDPPR G D+A + ++ P ++Y+SCNP +L R Sbjct: 375 WYKE---GVIAD---------TMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLAR 422 Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMEC 358 DL +L + + + D FP+T H+EC Sbjct: 423 DLKVLEEGGYKTQEVQPVDMFPHTTHVEC 451 >gi|291531353|emb|CBK96938.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Eubacterium siraeum 70/3] Length = 383 Score = 79.3 bits (194), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 54/190 (28%), Positives = 92/190 (48%), Gaps = 16/190 (8%) Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVE 238 +R +SF Q N + ++ + A K + D LL+ Y G G ++ + + +V +E Sbjct: 204 FRISPHSFYQINHAQTEKLYDYAIKAAKLTKKDVLLDAYSGIGTIGIIASDYVKQVQGIE 263 Query: 239 IAKPSVEAARYNIAANHVN-NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFV 297 +V A N N + N+ R + EF + + + H + + + Sbjct: 264 YNASAVRDAVKNCHENGLTRNIAFNRGDAGEFLEKKTK---------LGTH---YDAVIL 311 Query: 298 DPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRH 355 DP R+G D + +++ P I+YISCNP + RDL L+ +T+ + FD FP+TRH Sbjct: 312 DPARTGADRKFLNSLLKIAPERIVYISCNPATQARDLKTLTKKYTVTDIQPFDMFPHTRH 371 Query: 356 MECGVLLVRK 365 +EC V + RK Sbjct: 372 VECVVAMSRK 381 >gi|312112309|ref|YP_003990625.1| RNA methyltransferase, TrmA family [Geobacillus sp. Y4.1MC1] gi|311217410|gb|ADP76014.1| RNA methyltransferase, TrmA family [Geobacillus sp. Y4.1MC1] Length = 459 Score = 79.3 bits (194), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 44/157 (28%), Positives = 77/157 (49%), Gaps = 15/157 (9%) Query: 204 AATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVR 263 AA G + +++ YCG G L LA+ + +++ ++E A+ N + N V Sbjct: 308 AALTGTE-KVVDAYCGVGTIGLWLAKDAGEIRGMDVIPEAIEDAKKNAKKHGFANATYVS 366 Query: 264 MSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYPH-ILYI 321 ++ +E ++ I VDPPR+G D+ + + + P I+Y+ Sbjct: 367 GKAEALLPKWVKE------------GWKPDVIVVDPPRTGCDEQLLKTILKVKPQRIVYV 414 Query: 322 SCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMEC 358 SCNP SL RD+ +LS + ++ + D FP+T H+EC Sbjct: 415 SCNPSSLARDIDVLSKFYKVDYIQPVDMFPHTAHVEC 451 >gi|229055159|ref|ZP_04195586.1| Uncharacterized RNA methyltransferase [Bacillus cereus AH603] gi|228721151|gb|EEL72681.1| Uncharacterized RNA methyltransferase [Bacillus cereus AH603] Length = 465 Score = 79.3 bits (194), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 47/149 (31%), Positives = 77/149 (51%), Gaps = 15/149 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G+ SL LA+ +V VEI ++E A N A N++ N + ++ Sbjct: 322 VIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFGVGEAEVVIPK 381 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330 +E + D T+ VDPPR G D+A + ++ P ++Y+SCNP +L R Sbjct: 382 WYKE---GVIAD---------TMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLAR 429 Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMEC 358 DL +L + + + D FP+T H+EC Sbjct: 430 DLKVLEEGGYKTQEVQPVDMFPHTTHVEC 458 >gi|229068074|ref|ZP_04201382.1| Uncharacterized RNA methyltransferase [Bacillus cereus F65185] gi|228715082|gb|EEL66949.1| Uncharacterized RNA methyltransferase [Bacillus cereus F65185] Length = 454 Score = 79.3 bits (194), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 47/149 (31%), Positives = 77/149 (51%), Gaps = 15/149 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G+ SL LA+ +V VEI ++E A N A N++ N + ++ Sbjct: 311 VIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFGVGEAEVVIPK 370 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330 +E + D T+ VDPPR G D+A + ++ P ++Y+SCNP +L R Sbjct: 371 WYKE---GVIAD---------TMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLAR 418 Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMEC 358 DL +L + + + D FP+T H+EC Sbjct: 419 DLKVLEEGGYKTQEVQPVDMFPHTTHVEC 447 >gi|139437219|ref|ZP_01771379.1| Hypothetical protein COLAER_00358 [Collinsella aerofaciens ATCC 25986] gi|133776866|gb|EBA40686.1| Hypothetical protein COLAER_00358 [Collinsella aerofaciens ATCC 25986] Length = 442 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 60/184 (32%), Positives = 91/184 (49%), Gaps = 22/184 (11%) Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 SF Q N ++E V+ A + +L ++LYCG G F+L LAR D V AVE P+V Sbjct: 275 SFFQVNTKGAEILIELVMEALDPQEDELAVDLYCGAGTFTLPLARRCDFVAAVEAYGPAV 334 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 R N+ N ++NV ++ + REF +D D+ + VDPPR+GL Sbjct: 335 RDLRRNLEINKLDNVDVIGGDAV---------REFPD-QDADV-------LVVDPPRAGL 377 Query: 305 DDATVGMVQAYP--HILYISCNPDSLCRDLS--ILSTTHTIERLALFDQFPYTRHMECGV 360 + ++ + + Y+SC+P +L RDL + T + ++ D FP T H E V Sbjct: 378 APEAIDLIASTSAHDVAYVSCDPATLARDLKRFVEEGTFSPVKITPVDLFPQTFHCETVV 437 Query: 361 LLVR 364 L R Sbjct: 438 HLKR 441 >gi|315303628|ref|ZP_07874164.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria ivanovii FSL F6-596] gi|313628001|gb|EFR96598.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria ivanovii FSL F6-596] Length = 453 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 60/218 (27%), Positives = 102/218 (46%), Gaps = 32/218 (14%) Query: 155 ANKTKICLDRDYVDE-----RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGI 209 N+TK +D +++ R ++ R SF Q N + + L A + + Sbjct: 255 GNRTKTLWGKDIIEDSIHGIRFAISAR---------SFYQVNPLQTEVLYQQALEAAE-L 304 Query: 210 QGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267 G+ +++ YCG G+ SL LA+ V VEI +++ AR N A N +NN ++ Sbjct: 305 TGEETVIDAYCGIGSISLCLAKKAKHVYGVEIVDQAIQDARANAALNELNNTTFETGKAE 364 Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNP 325 E A + + D+ + VDPPR G D+ + + A ++Y+SCNP Sbjct: 365 EVIPAWYKA---GIIADV---------LVVDPPRKGCDEKLLQTILAMKPKKVVYVSCNP 412 Query: 326 DSLCRDLSILS-TTHTIERLALFDQFPYTRHMECGVLL 362 +L RD+ IL+ + +++ D FP T H+E +L Sbjct: 413 GTLARDMQILTEGGYEAKQVQPVDMFPMTTHIEAVTVL 450 >gi|320353045|ref|YP_004194384.1| TrmA family RNA methyltransferase [Desulfobulbus propionicus DSM 2032] gi|320121547|gb|ADW17093.1| RNA methyltransferase, TrmA family [Desulfobulbus propionicus DSM 2032] Length = 432 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 52/154 (33%), Positives = 75/154 (48%), Gaps = 14/154 (9%) Query: 214 LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273 L+L+CG GNFS+ L +V VE + SV A +N + + R S + QA+ Sbjct: 291 LDLFCGMGNFSIPLGLMGTQVSGVEHNRTSVHWAEHN---SRAAGLTTARFRSADVGQAL 347 Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL 332 R + RF + +DPPR GL + + P HIL ISC+P +L RDL Sbjct: 348 R---------SLVARKARFDCVLLDPPRQGLGKTAALLARLGPQHILSISCDPATLARDL 398 Query: 333 S-ILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 + I+ + I ++ D FP T H+E LL R Sbjct: 399 ALIVQNGYRIVQVTPVDMFPQTHHIETVALLERN 432 >gi|184156902|ref|YP_001845241.1| 23S rRNA 5-methyluridine methyltransferase [Acinetobacter baumannii ACICU] gi|332874021|ref|ZP_08441956.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Acinetobacter baumannii 6014059] gi|226725374|sp|B2HTF7|RUMA_ACIBC RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|183208496|gb|ACC55894.1| SAM-dependent methyltransferase [Acinetobacter baumannii ACICU] gi|322506798|gb|ADX02252.1| rumA [Acinetobacter baumannii 1656-2] gi|323516667|gb|ADX91048.1| 23S rRNA 5-methyluridine methyltransferase [Acinetobacter baumannii TCDC-AB0715] gi|332737762|gb|EGJ68654.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Acinetobacter baumannii 6014059] Length = 463 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 59/191 (30%), Positives = 98/191 (51%), Gaps = 32/191 (16%) Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHF---DRVLAVEIAKP 242 FTQ NA +N M++ + QG+ +L+L+CG GNFSL LAR +V+ VE ++ Sbjct: 286 FTQVNATVNEQMVQLACELLQLQQGERVLDLFCGLGNFSLPLARCVGAKGQVVGVEASEE 345 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDP 299 V+ A N N++ + + F+Q + KD HS+ F + +DP Sbjct: 346 MVQRATDNAKRNNL-------VQASFFSQDL--------TKDFSHHSWANQGFDALLIDP 390 Query: 300 PRSGLDDATVGMVQAYPH-----ILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYT 353 PR+G + ++Q P+ I+Y+SCNP +L RD +L + +++ A+ D F +T Sbjct: 391 PRAGAYE----IMQYVPNFGAKRIVYVSCNPATLARDAGVLVQHGYQLKKAAVMDMFTHT 446 Query: 354 RHMECGVLLVR 364 H+E L + Sbjct: 447 EHVESIALFEK 457 >gi|294637605|ref|ZP_06715885.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Edwardsiella tarda ATCC 23685] gi|291089235|gb|EFE21796.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Edwardsiella tarda ATCC 23685] Length = 440 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 55/180 (30%), Positives = 85/180 (47%), Gaps = 27/180 (15%) Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 F Q N +N M L+W+ A +L+L+CG GNF+L LAR V+ VE + Sbjct: 269 FIQVNGQVNQQMVARALDWLDARADE---RVLDLFCGMGNFTLPLARQAQWVVGVEGVRE 325 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDP 299 V A+ N N ++NV+ + +E D+ + F + +DP Sbjct: 326 LVARAQNNARHNGLSNVEFFHQNLEE---------------DVTCQPWAAQGFDKVLLDP 370 Query: 300 PRSGLDDATVGMVQAYP-HILYISCNPDSLCRDLSI-LSTTHTIERLALFDQFPYTRHME 357 R+G +V P ++Y+SCNP +L RD + L + + RL L D FP+T H+E Sbjct: 371 ARAGAPGVMQHIVHLAPRRVVYVSCNPATLARDSRVLLQGGYQLTRLCLLDMFPHTGHLE 430 >gi|213156040|ref|YP_002318085.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Acinetobacter baumannii AB0057] gi|226725373|sp|B7I675|RUMA_ACIB5 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|213055200|gb|ACJ40102.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Acinetobacter baumannii AB0057] Length = 462 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 59/191 (30%), Positives = 98/191 (51%), Gaps = 32/191 (16%) Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHF---DRVLAVEIAKP 242 FTQ NA +N M++ + QG+ +L+L+CG GNFSL LAR +V+ VE ++ Sbjct: 285 FTQVNATVNEQMVQLACELLQLQQGERVLDLFCGLGNFSLPLARCVGAKGQVVGVEASEE 344 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDP 299 V+ A N N++ + + F+Q + KD HS+ F + +DP Sbjct: 345 MVQRATDNAKRNNL-------VQASFFSQDL--------TKDFSHHSWANQGFDALLIDP 389 Query: 300 PRSGLDDATVGMVQAYPH-----ILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYT 353 PR+G + ++Q P+ I+Y+SCNP +L RD +L + +++ A+ D F +T Sbjct: 390 PRAGAYE----IMQYVPNFGAKRIVYVSCNPATLARDAGVLVQHGYQLKKAAVMDMFTHT 445 Query: 354 RHMECGVLLVR 364 H+E L + Sbjct: 446 EHVESIALFEK 456 >gi|239500714|ref|ZP_04660024.1| 23S rRNA 5-methyluridine methyltransferase [Acinetobacter baumannii AB900] Length = 463 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 59/191 (30%), Positives = 98/191 (51%), Gaps = 32/191 (16%) Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHF---DRVLAVEIAKP 242 FTQ NA +N M++ + QG+ +L+L+CG GNFSL LAR +V+ VE ++ Sbjct: 286 FTQVNATVNEQMVQLACELLQLQQGERVLDLFCGLGNFSLPLARCVGAKGQVVGVEASEE 345 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDP 299 V+ A N N++ + + F+Q + KD HS+ F + +DP Sbjct: 346 MVQRATDNAKRNNL-------VQASFFSQDL--------TKDFSHHSWANQGFDALLIDP 390 Query: 300 PRSGLDDATVGMVQAYPH-----ILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYT 353 PR+G + ++Q P+ I+Y+SCNP +L RD +L + +++ A+ D F +T Sbjct: 391 PRAGAYE----IMQYVPNFGAKRIVYVSCNPATLARDAGVLVQHGYQLKKAAVMDMFTHT 446 Query: 354 RHMECGVLLVR 364 H+E L + Sbjct: 447 EHVESIALFEK 457 >gi|258405875|ref|YP_003198617.1| (Uracil-5)-methyltransferase [Desulfohalobium retbaense DSM 5692] gi|257798102|gb|ACV69039.1| (Uracil-5)-methyltransferase [Desulfohalobium retbaense DSM 5692] Length = 391 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 77/283 (27%), Positives = 119/283 (42%), Gaps = 65/283 (22%) Query: 130 AWRECAIRLRDALHARKYQIQLIGRANKTKI----CL-------------DRDYVDERLT 172 WR R R LH + Q L+G+ + K+ CL RD D R T Sbjct: 127 GWR---YRWRGQLHVHQGQPHLLGQGSHAKVPIERCLLFARPLAEALPRLARDLPDGRHT 183 Query: 173 VAGRT---------------------LIYRQIENSFTQPNAGINVHMLE----WVLAATK 207 VA L + +F Q N +N ++E W A ++ Sbjct: 184 VAASPVDHAVASALETHRLSLPLPGGLAVDVLPQTFFQANQSLNPTLVEHIRSWCPAGSR 243 Query: 208 GIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267 + +LY G GNF L LA+ + V AVE P+++AAR A + +++ + + Sbjct: 244 -----VADLYAGAGNFGLPLAQAGNPVFAVEGDGPALQAARTTAARSGLDHWQGRQAD-- 296 Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM--VQAYPHILYISCNP 325 +R ER + I ++ + DPPRSG + + + I++ISC+ Sbjct: 297 -----LRHERAWK-----PILEFQPDVVVADPPRSGSGPVCRHLLHIPSLERIIWISCDL 346 Query: 326 DSLCRDL-SILSTTHTIERLALFDQFPYTRHMECGVLLVRKPS 367 + RD+ S L+ + LALFD FP T HME +L R+ S Sbjct: 347 TNSARDVRSFLTQGWQLTSLALFDMFPQTWHMEGVFILDRRGS 389 >gi|170289500|ref|YP_001739738.1| RNA methyltransferase [Thermotoga sp. RQ2] gi|170177003|gb|ACB10055.1| RNA methyltransferase, TrmA family [Thermotoga sp. RQ2] Length = 439 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 59/185 (31%), Positives = 94/185 (50%), Gaps = 21/185 (11%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 +F Q N I +++ V +QG+ +L+LY G G FS+ + RV++VE ++ Sbjct: 268 TAFFQSNYSITSKLIDHVYREL-ALQGNEVVLDLYAGIGTFSVRTSFSAARVISVESSRV 326 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302 +V+A + N N N++ V +F LK+ +S R I +DPPRS Sbjct: 327 AVKAGKANANINSRRNIEYVEQDVLDF------------LKN---YSGRADRIILDPPRS 371 Query: 303 GLD-DATVGMVQAYPH-ILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECG 359 G +A + + P I+Y+SC P +L RDL +L ++I + FD FP T H+E Sbjct: 372 GAGPEAMKEIARLSPERIVYVSCEPSTLVRDLKVLVENGYSIVGVKPFDMFPQTYHVETA 431 Query: 360 VLLVR 364 V LV+ Sbjct: 432 VTLVK 436 >gi|15601683|ref|NP_233314.1| 23S rRNA methyluridine methyltransferase [Vibrio cholerae O1 biovar eltor str. N16961] gi|153821031|ref|ZP_01973698.1| TrmA family RNA methyltransferase, putative [Vibrio cholerae B33] gi|229510217|ref|ZP_04399697.1| RNA methyltransferase TrmA family [Vibrio cholerae B33] gi|229517653|ref|ZP_04407098.1| RNA methyltransferase TrmA family [Vibrio cholerae RC9] gi|229605461|ref|YP_002876165.1| 23S rRNA methyluridine methyltransferase [Vibrio cholerae MJ-1236] gi|254850093|ref|ZP_05239443.1| 23S rRNA (uracil-5-)-methyltransferase rumB [Vibrio cholerae MO10] gi|20455420|sp|Q9KL20|RUMB_VIBCH RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName: Full=23S rRNA(M-5-U747)-methyltransferase gi|9658366|gb|AAF96826.1| TrmA family RNA methyltransferase, putative [Vibrio cholerae O1 biovar El Tor str. N16961] gi|126521405|gb|EAZ78628.1| TrmA family RNA methyltransferase, putative [Vibrio cholerae B33] gi|229345689|gb|EEO10662.1| RNA methyltransferase TrmA family [Vibrio cholerae RC9] gi|229352662|gb|EEO17602.1| RNA methyltransferase TrmA family [Vibrio cholerae B33] gi|229371947|gb|ACQ62369.1| RNA methyltransferase TrmA family [Vibrio cholerae MJ-1236] gi|254845798|gb|EET24212.1| 23S rRNA (uracil-5-)-methyltransferase rumB [Vibrio cholerae MO10] Length = 375 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 47/155 (30%), Positives = 77/155 (49%), Gaps = 18/155 (11%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + +L+CG G F+L A V +EI ++ +A+ + ++N+ + S +F+Q+ Sbjct: 237 MWDLFCGVGGFALHCAAPDTAVTGIEIEPEAIASAQRSAQMMGIDNLSFAALDSAKFSQS 296 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCR 330 E + V+PPR GL ++A +ILY SCNP ++ + Sbjct: 297 QMSAPEL---------------VLVNPPRRGLGSELTAQLEALAPKYILYSSCNPQTMVK 341 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 D++ LS+ I R+ FD FP+T H E LLVRK Sbjct: 342 DIAELSSYQMI-RVQWFDMFPHTDHAEVLTLLVRK 375 >gi|332523646|ref|ZP_08399898.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus porcinus str. Jelinkova 176] gi|332314910|gb|EGJ27895.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus porcinus str. Jelinkova 176] Length = 453 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 45/155 (29%), Positives = 77/155 (49%), Gaps = 15/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ Y G G L A+ +V VE+ + +V+ AR N N ++N + V S++ + Sbjct: 308 VIDAYSGIGTIGLSFAKKVKKVYGVEVIEAAVKDARKNAERNGIHNAEFVIGSAEATMEK 367 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV--GMVQAYPHILYISCNPDSLCR 330 +E + I VDPPR GL ++ + A I Y+SCNP ++ R Sbjct: 368 WSKE------------GIKPSVILVDPPRKGLTESFIKASAAMAPKKITYVSCNPATMAR 415 Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364 D+ + + ++++ D FP+T H+EC VLL R Sbjct: 416 DIKLYQELGYDLKKVQPVDLFPHTHHVECVVLLQR 450 >gi|302335620|ref|YP_003800827.1| 23S rRNA m(5)U-1939 methyltransferase [Olsenella uli DSM 7084] gi|301319460|gb|ADK67947.1| 23S rRNA m(5)U-1939 methyltransferase [Olsenella uli DSM 7084] Length = 446 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 61/177 (34%), Positives = 84/177 (47%), Gaps = 22/177 (12%) Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 SF Q N ++ VL + + D ++LYCG G F+L LAR V AVE P+V Sbjct: 279 SFFQVNTRGAERLVSLVLEGLRPTEDDGAMDLYCGAGTFTLPLARRCAWVSAVESYGPAV 338 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 R+N+ ++NV Q +REF + D D+ I VDPPR+GL Sbjct: 339 RDLRHNLDVARLDNVD---------AQGGDADREFPQ-SDADV-------IVVDPPRAGL 381 Query: 305 DDATVGMVQAYP--HILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTRHME 357 A V + A I Y+SC+P +L RDL+ IE + D FP T H+E Sbjct: 382 GGAVVDKLSAQDARAIAYVSCDPATLARDLARFRERAAFAIESVVPVDLFPQTFHVE 438 >gi|167760785|ref|ZP_02432912.1| hypothetical protein CLOSCI_03170 [Clostridium scindens ATCC 35704] gi|167661672|gb|EDS05802.1| hypothetical protein CLOSCI_03170 [Clostridium scindens ATCC 35704] Length = 567 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 104/397 (26%), Positives = 165/397 (41%), Gaps = 61/397 (15%) Query: 9 QYEQQLAEKVDRLR-QMMLAFQVPNLQIFRS--------EPIHYRMRAEFHIWHDGDDLY 59 +Y++QLA K D++R +M +VP + ++ P HYR +A+F I D + Sbjct: 89 EYDRQLAFKEDKIRGNLMRIGEVPAEVLDQALEPIVGMDNPFHYRNKAQFPIGTDNEG-- 146 Query: 60 HIMFDQQTKERMRIDYFMPG---SLLIN---ALMIEMMATIRLEPLLRAKLFQIDYLTSQ 113 HI I F G S++ N AL +E+ I + L + ++I Sbjct: 147 HI-----------ITGFYAGRTHSIIPNTDCALGVEVNEVILKQILTFMEEYKISAYDET 195 Query: 114 SDQAIV--TLIYHRLLDDAWRECAIRLRDAL-HARKYQIQLIGRANKTKICLDRDYVDER 170 + +V LI + + C + + L H +L T I L + Sbjct: 196 EHKGLVRHVLIRYGFVTKEIMVCLVINGNHLPHGEILAERLAKIEGMTSITLSINKEKTN 255 Query: 171 LTVA-------GRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGD--L 213 + + G+T I I N SF Q N + L + G+ G + Sbjct: 256 VIMGSKIEPLWGKTYITDYIANVKYQISPLSFYQVNP-VQTEKLYGLALEYAGLTGKETV 314 Query: 214 LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA- 272 +LYCG G SL LA+ V VEI ++E A N N + N + ++E Sbjct: 315 WDLYCGIGTISLFLAQKAKEVYGVEIVPQAIEDASNNAKINGIENARFYVGKAEEVLPEY 374 Query: 273 -MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLC 329 + E+E R D+ I VDPPR G +++ + MV P I+Y+SC+ +L Sbjct: 375 YAQYEKEHGRNAHADV-------IVVDPPRKGCEESLLQTMVDMEPERIVYVSCDSATLA 427 Query: 330 RDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRK 365 RD+ L + + R DQF +T H+E LL+ K Sbjct: 428 RDVKFLREKGYELVRGRGVDQFGHTVHVETVALLIPK 464 >gi|154496435|ref|ZP_02035131.1| hypothetical protein BACCAP_00727 [Bacteroides capillosus ATCC 29799] gi|150274518|gb|EDN01595.1| hypothetical protein BACCAP_00727 [Bacteroides capillosus ATCC 29799] Length = 454 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 52/155 (33%), Positives = 78/155 (50%), Gaps = 15/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +L+LYCG G SLV+AR +V E+ +VE AR N N VNN + + + E +A Sbjct: 310 VLDLYCGIGTISLVMARQAGKVFGAEVVPQAVEDARENALRNGVNNAEFLCGDAGEAARA 369 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGL-DDATVGMVQAYPH-ILYISCNPDSLCR 330 + + + VDPPR GL +D +V P ++Y+SC+P +L R Sbjct: 370 LA------------ARGVKPDVVCVDPPRKGLAEDVVDTIVSMAPERVVYVSCDPATLAR 417 Query: 331 DLS-ILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D+ +S + + + D FP T H+E VLL R Sbjct: 418 DVKRFVSLGYVLRKAEAVDMFPRTAHVESVVLLTR 452 >gi|239905414|ref|YP_002952153.1| 23S rRNA (uracil-5-)-methyltransferase [Desulfovibrio magneticus RS-1] gi|239795278|dbj|BAH74267.1| 23S rRNA (uracil-5-)-methyltransferase [Desulfovibrio magneticus RS-1] Length = 450 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 56/219 (25%), Positives = 98/219 (44%), Gaps = 21/219 (9%) Query: 142 LHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEW 201 +H+ + + + I L R ++ E++ A R + ++F Q N G + E Sbjct: 241 VHSVRRAPTPVAHGERQSIVLGRGHLTEKMGQA----TLRVLPDAFAQTNTGAAQSLYEI 296 Query: 202 VL-AATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK 260 V A+ G L+LYCG+G +L LA F V ++I S+E+A+ + + +N Sbjct: 297 VTREASSDPAGTALDLYCGSGGLALNLAPAFAEVRGLDIDPRSIESAKASAKLSEAHNCV 356 Query: 261 IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHI 318 F A + + D + +DPPR+G + + A + Sbjct: 357 --------FEAADAADALDDLAGDPPT------VVVLDPPRAGAAPEVIAAILRTAPGRV 402 Query: 319 LYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHME 357 +Y+SCNP +L RDL L+ + + + D FP+T H+E Sbjct: 403 VYVSCNPATLARDLKRLAEAYDVTSVTPVDLFPHTAHIE 441 >gi|16800882|ref|NP_471150.1| hypothetical protein lin1815 [Listeria innocua Clip11262] gi|50401775|sp|Q92AV4|Y1815_LISIN RecName: Full=Uncharacterized RNA methyltransferase lin1815 gi|16414317|emb|CAC97046.1| lin1815 [Listeria innocua Clip11262] Length = 457 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 47/156 (30%), Positives = 74/156 (47%), Gaps = 16/156 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L++ YCG G A V ++I S+E A+ N N ++NV +++ Sbjct: 315 LVDAYCGVGTIGQAFAGKVKEVRGMDIIPESIEDAKRNAEKNGIDNVYYEVGKAEDVLPK 374 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG---MVQAYPHILYISCNPDSLC 329 +E +R + VDPPRSG D + V+A ++Y+SCNP +L Sbjct: 375 WVKE------------GFRPDAVIVDPPRSGCDQGLIKSLLQVEAK-QLVYVSCNPSTLA 421 Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 RDL++L+ + I + D FP T H+E LL R+ Sbjct: 422 RDLALLAKKYQIRYMQPVDMFPQTAHVETVTLLQRR 457 >gi|296329282|ref|ZP_06871783.1| tRNA (uracil-5-)-methyltransferase [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296153638|gb|EFG94455.1| tRNA (uracil-5-)-methyltransferase [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 543 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 45/156 (28%), Positives = 76/156 (48%), Gaps = 17/156 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS-SKEFTQ 271 +++ Y G G +++A+ +V A+EI K + E N + N++ + + KE + Sbjct: 308 IVDAYSGTGTIGMIIAKKAKKVYAIEIVKSASEDGEKTAKENGIKNIEFINGAVEKELVK 367 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLC 329 + N K IDI I DPPR GL+ + + V ++YISCNP + Sbjct: 368 LI------NNNKKIDI-------IIFDPPRKGLEASIIDKVAELNLKEVVYISCNPSTFA 414 Query: 330 RDLSILSTT-HTIERLALFDQFPYTRHMECGVLLVR 364 RD+ + S + +++L D FP T H+E LL + Sbjct: 415 RDIKLFSEKGYVLKKLQAVDMFPQTSHIETVALLSK 450 >gi|313904355|ref|ZP_07837733.1| RNA methyltransferase, TrmA family [Eubacterium cellulosolvens 6] gi|313470905|gb|EFR66229.1| RNA methyltransferase, TrmA family [Eubacterium cellulosolvens 6] Length = 490 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 49/159 (30%), Positives = 82/159 (51%), Gaps = 15/159 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++LYCG G SL LA +V+ VEI ++E A+ N A N + N + ++E A Sbjct: 344 VMDLYCGIGTISLFLAAKAAKVIGVEIVPEAIEDAKKNAAMNGIENAEFYVGKAEEVVPA 403 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYP-HILYISCNPDSLCR 330 + + + D+ + VDPPR G D + + Q P ++Y+SC+P +L R Sbjct: 404 L-----YAKGAKADV-------VVVDPPRKGCDQKLLDTILQMDPGRLVYVSCDPATLAR 451 Query: 331 DLSILSTT-HTIERLALFDQFPYTRHMECGVLLVRKPSG 368 DL L+ + ++ + +DQF +T H+E LL + G Sbjct: 452 DLKFLTANGYELKYVQPYDQFCHTVHVETCCLLEKTVVG 490 >gi|293401173|ref|ZP_06645317.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291305299|gb|EFE46544.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 438 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 52/182 (28%), Positives = 86/182 (47%), Gaps = 15/182 (8%) Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 SF Q N + + + + G ++E Y G G SL L ++ +E K +V Sbjct: 268 SFFQLNTKQAIQLYRTIASMISGNHEFIVEAYSGIGAISLYLKDKAKEIIGIESIKDAVV 327 Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD 305 A N N +V V A + ++ + ID+ + VDPPRSGLD Sbjct: 328 NANRNAKKNGCAHVSFV------CDDAANKLVYLSKKRTIDV-------LVVDPPRSGLD 374 Query: 306 DATVGMV--QAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363 DA + + I+Y+SCN +L ++L++L + + +E++ D FP+T H+E L+ Sbjct: 375 DAMLECILRSKIKEIVYVSCNAATLGKNLAVLQSCYHVEKVVPIDMFPHTPHVETVCLMS 434 Query: 364 RK 365 RK Sbjct: 435 RK 436 >gi|169797170|ref|YP_001714963.1| 23S rRNA 5-methyluridine methyltransferase [Acinetobacter baumannii AYE] gi|215484633|ref|YP_002326868.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Acinetobacter baumannii AB307-0294] gi|301345773|ref|ZP_07226514.1| 23S rRNA 5-methyluridine methyltransferase [Acinetobacter baumannii AB056] gi|301511169|ref|ZP_07236406.1| 23S rRNA 5-methyluridine methyltransferase [Acinetobacter baumannii AB058] gi|301594976|ref|ZP_07239984.1| 23S rRNA 5-methyluridine methyltransferase [Acinetobacter baumannii AB059] gi|332856909|ref|ZP_08436318.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Acinetobacter baumannii 6013150] gi|226725372|sp|B7H018|RUMA_ACIB3 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|226725376|sp|B0V5N2|RUMA_ACIBY RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|169150097|emb|CAM87991.1| 23S rRNA (Uracil-5-)-methyltransferase(23S rRNA(M-5-U1939)-methyltransferase) [Acinetobacter baumannii AYE] gi|213985913|gb|ACJ56212.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Acinetobacter baumannii AB307-0294] gi|332726963|gb|EGJ58468.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Acinetobacter baumannii 6013150] Length = 463 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 59/191 (30%), Positives = 98/191 (51%), Gaps = 32/191 (16%) Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHF---DRVLAVEIAKP 242 FTQ NA +N M++ + QG+ +L+L+CG GNFSL LAR +V+ VE ++ Sbjct: 286 FTQVNATVNEQMVQLACELLQLQQGERVLDLFCGLGNFSLPLARCVGAKGQVVGVEASEE 345 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDP 299 V+ A N N++ + + F+Q + KD HS+ F + +DP Sbjct: 346 MVQRATDNAKRNNL-------VQASFFSQDL--------TKDFSHHSWANQGFDALLIDP 390 Query: 300 PRSGLDDATVGMVQAYPH-----ILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYT 353 PR+G + ++Q P+ I+Y+SCNP +L RD +L + +++ A+ D F +T Sbjct: 391 PRAGAYE----IMQYVPNFGAKRIVYVSCNPATLARDAGVLVQHGYQLKKAAVMDMFTHT 446 Query: 354 RHMECGVLLVR 364 H+E L + Sbjct: 447 EHVESIALFEK 457 >gi|293188991|ref|ZP_06607724.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Actinomyces odontolyticus F0309] gi|292822093|gb|EFF81019.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Actinomyces odontolyticus F0309] Length = 387 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 66/204 (32%), Positives = 95/204 (46%), Gaps = 25/204 (12%) Query: 171 LTVAGRTLIYRQIENSFTQPNAGINVHMLEW--VLAATKGIQGDLLE----LYCGNGNFS 224 L+V G L R SF Q NA + + E V A+ G L E LYCG G F+ Sbjct: 198 LSVEGLELGPR----SFAQTNAHVASTLYEQASVWASRPFTDGRLPESLWDLYCGVGGFA 253 Query: 225 LVLARH-FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 L AR F RV VE++ ++ +A AA H + + A R + + Sbjct: 254 LACARSGFPRVTGVEVSPGAISSAIS--AARHAGLSRGAATFIADDATAWARAQSPEDVP 311 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTI 341 D+ I V+PPR G+ + A P ++Y SCNP SL RDL ++ + + Sbjct: 312 DV---------IVVNPPRRGIGADLAAYLNGCAAPRVIYSSCNPASLARDLQLMPSLRPV 362 Query: 342 ERLALFDQFPYTRHMECGVLLVRK 365 E +FD FP+T H+E +LL R+ Sbjct: 363 EGR-IFDMFPHTTHVEVALLLERE 385 >gi|260590015|ref|ZP_05855928.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Blautia hansenii DSM 20583] gi|260539527|gb|EEX20096.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Blautia hansenii DSM 20583] Length = 462 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 63/232 (27%), Positives = 105/232 (45%), Gaps = 31/232 (13%) Query: 142 LHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEW 201 LH + + R+++T+I +DY E + L ++ SF QPN+ + E Sbjct: 254 LHIINNSLSDVVRSDETRILYGQDYFYEEIL----GLKFKITPFSFFQPNS----YGAEV 305 Query: 202 VLAATKGIQGD-----LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV 256 + + GD + +LY G G S ++A V+ VEI + +V+AA N N + Sbjct: 306 LYKTAREYIGDTKEMTVFDLYSGTGTISQIMASVAKEVIGVEIVEEAVKAAGENAHLNGI 365 Query: 257 NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP 316 N + + + ++ + +F I +DPPR G+ + + Y Sbjct: 366 ENCRFIAGDVLKVLDDIQEKPDF---------------IILDPPRDGIHPKALPKIIDYG 410 Query: 317 --HILYISCNPDSLCRDLSI-LSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 ++YISC P SL RDL + L + +E++ DQF T H+E LL RK Sbjct: 411 VDKLVYISCKPTSLARDLEMFLGRGYQVEKVCCVDQFCQTVHVETVCLLQRK 462 >gi|255320868|ref|ZP_05362042.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Acinetobacter radioresistens SK82] gi|262380239|ref|ZP_06073394.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Acinetobacter radioresistens SH164] gi|255302037|gb|EET81280.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Acinetobacter radioresistens SK82] gi|262298433|gb|EEY86347.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Acinetobacter radioresistens SH164] Length = 463 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 60/191 (31%), Positives = 96/191 (50%), Gaps = 32/191 (16%) Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLAR---HFDRVLAVEIAKP 242 FTQ N+ +N M+ G+ +L+L+CG GNFSL LAR +V+AVE ++ Sbjct: 286 FTQVNSTVNSQMVSLACNLLNLQPGERVLDLFCGLGNFSLPLARCVGETGQVIAVEGSED 345 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDP 299 V+ N +N + N VR S++ T KD HS+ F + +DP Sbjct: 346 MVKRGTENARSNKLLN---VRFYSQDLT------------KDFSSHSWAKQGFDALLIDP 390 Query: 300 PRSGLDDATVGMVQAYPH-----ILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYT 353 PR+G ++ ++ P+ I+Y+SCNP +L RD IL + +++ + D F +T Sbjct: 391 PRAGAEE----VMHYLPNFNAKRIVYVSCNPATLARDAGILVEHGYRLKKAGVMDMFTHT 446 Query: 354 RHMECGVLLVR 364 H+E VL + Sbjct: 447 GHVESIVLFEK 457 >gi|307249529|ref|ZP_07531516.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306858384|gb|EFM90453.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 442 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 56/185 (30%), Positives = 88/185 (47%), Gaps = 23/185 (12%) Query: 187 FTQPNAGINVHM----LEWV-LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241 F Q N +N M LEW+ L+A Q +L+L+CG GNF+L +A+ V+ VE + Sbjct: 274 FIQVNGDLNEKMVDKALEWLDLSA----QDRVLDLFCGMGNFTLPIAKQAGFVVGVEGVE 329 Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301 P V AR N + + NV + + E D S F + +DP R Sbjct: 330 PMVAQARQNRDTSGLKNVAFYQTNLDE------------PFADKPWASEPFNKVLLDPAR 377 Query: 302 SGLDDATVGMVQAYPH-ILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHMECG 359 +G + P I+Y+SCNP +L RD ++ + +++ A+ D FP+T H+E Sbjct: 378 NGAFFCLDHLAALNPGTIVYVSCNPATLVRDAEKLIQAGYKLQKAAMIDMFPHTGHLESI 437 Query: 360 VLLVR 364 L + Sbjct: 438 SLFTK 442 >gi|225571369|ref|ZP_03780365.1| hypothetical protein CLOHYLEM_07467 [Clostridium hylemonae DSM 15053] gi|225159845|gb|EEG72464.1| hypothetical protein CLOHYLEM_07467 [Clostridium hylemonae DSM 15053] Length = 475 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 58/190 (30%), Positives = 92/190 (48%), Gaps = 17/190 (8%) Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 SF Q N + E L G+ GD + +LYCG G SL LA+ V VEI + Sbjct: 287 SFYQVNPVQTERLYETALEYA-GLHGDETVWDLYCGIGTISLFLAQKAKHVYGVEIVPQA 345 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 +E A+ N N + N + +++ + ++ IH+ I VDPPR G Sbjct: 346 IEDAKKNAQINGIENARFYVGKAEDVLP--------EKYENDGIHA---DIIVVDPPRKG 394 Query: 304 LDDATV-GMVQAYPH-ILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGV 360 +++ + MV+ P I+Y+SC+ +L RD+ L + + ++R+ D FP+T H E Sbjct: 395 CEESVLHTMVKMQPERIVYVSCDSATLARDVKYLRGSGYEVKRVKGVDMFPHTGHTEVVC 454 Query: 361 LLVRKPSGWH 370 LL + S H Sbjct: 455 LLSKLKSSKH 464 >gi|154483239|ref|ZP_02025687.1| hypothetical protein EUBVEN_00940 [Eubacterium ventriosum ATCC 27560] gi|149736047|gb|EDM51933.1| hypothetical protein EUBVEN_00940 [Eubacterium ventriosum ATCC 27560] Length = 317 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 53/158 (33%), Positives = 81/158 (51%), Gaps = 19/158 (12%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + +LY G G + +LA +V+ VEI + +VEAA+ N + N++ N EF Sbjct: 95 IFDLYSGTGTIAQILAPVAKKVVGVEIIEEAVEAAKVNASLNNLENC--------EFIAG 146 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330 + LK ID + I +DPPR G++ + + + ++YISC P SL R Sbjct: 147 -------DVLKVIDDLQDKPDLIVLDPPRDGINPKALQKIIDFGVDRMVYISCKPTSLAR 199 Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMECGVLLV-RKP 366 DL +L + + + A DQFP T H+E VLL +KP Sbjct: 200 DLEMLQEQGYKVVKAAAIDQFPNTNHVETVVLLSQQKP 237 >gi|325920673|ref|ZP_08182583.1| 23S rRNA m(5)U-1939 methyltransferase [Xanthomonas gardneri ATCC 19865] gi|325548863|gb|EGD19807.1| 23S rRNA m(5)U-1939 methyltransferase [Xanthomonas gardneri ATCC 19865] Length = 444 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 59/192 (30%), Positives = 91/192 (47%), Gaps = 18/192 (9%) Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLA 236 L +R ++ F Q NA +N M+ LA D +L+L+CG GNF+L LAR V+ Sbjct: 267 LAFRPLD--FIQVNASLNQKMIAHALALLDARPEDRVLDLFCGLGNFTLPLARGVREVVG 324 Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296 VE V AR N N ++N + + + TQ R + F + Sbjct: 325 VEGDAGLVARARENAQRNGLDNAQ---FHAADLTQDQRHTAWMRQ---------GFDKLL 372 Query: 297 VDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDLSILSTTH--TIERLALFDQFPYT 353 +DPPRSG + + ++ + I+Y+SC+P SL RD L T++ D FP+T Sbjct: 373 LDPPRSGALEVLQQLPLKKFERIVYVSCHPGSLARDAGYLVNEQGFTLKAAGAMDMFPHT 432 Query: 354 RHMECGVLLVRK 365 H+E + R+ Sbjct: 433 AHVESIAVFERR 444 >gi|268319959|ref|YP_003293615.1| 23S rRNA (uracil-5-)-methyltransferase RumA2 [Lactobacillus johnsonii FI9785] gi|262398334|emb|CAX67348.1| 23S rRNA (uracil-5-)-methyltransferase RumA2 [Lactobacillus johnsonii FI9785] Length = 449 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 48/156 (30%), Positives = 74/156 (47%), Gaps = 15/156 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ Y G G L +A+H V +E+ KP+VE A N N + N + V ++E Sbjct: 305 VIDAYSGIGTIGLSVAKHVKAVRGMEVIKPAVEDANANAKLNGITNAEYVVGKAEEVMPR 364 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCR 330 +E + IFVDPPR GL + V+ P I+YISCNP ++ R Sbjct: 365 WAKE------------GLKTDVIFVDPPRKGLTPEFIDAAVETNPKKIVYISCNPATMVR 412 Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVRK 365 DL + + + + D FP T H+E +L R+ Sbjct: 413 DLQLFKEQGYDFDEIDPVDMFPQTPHVESVTVLERQ 448 >gi|315608157|ref|ZP_07883149.1| 23S rRNA (uracil-5-)-methyltransferase [Prevotella buccae ATCC 33574] gi|315250126|gb|EFU30123.1| 23S rRNA (uracil-5-)-methyltransferase [Prevotella buccae ATCC 33574] Length = 490 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 58/184 (31%), Positives = 87/184 (47%), Gaps = 16/184 (8%) Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDLL--ELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 SF Q N H+ V + GD L +LY G G + +AR +V+ +E + Sbjct: 319 SFYQTNTEQAYHLYS-VAREFSQLTGDELVYDLYTGTGTIANFVAREAKQVIGIEYVPEA 377 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 +E A+ N N ++N K+ EF R R I DPPR+G Sbjct: 378 IEDAKVNSEINGIDNTLFYAGDMKDILN-----DEFIR------QHGRPDVIITDPPRAG 426 Query: 304 LD-DATVGMVQAYPH-ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVL 361 + D ++ A P I+Y+SCNP + RDL++L + +E + D FP+T H+E VL Sbjct: 427 MHADVVNTILHAAPRRIVYVSCNPATQARDLNLLDVDYRVEEVQPVDMFPHTPHVENVVL 486 Query: 362 LVRK 365 LVR+ Sbjct: 487 LVRR 490 >gi|300853527|ref|YP_003778511.1| rRNA (uracil-5-)-methyltransferase [Clostridium ljungdahlii DSM 13528] gi|300433642|gb|ADK13409.1| rRNA (uracil-5-)-methyltransferase [Clostridium ljungdahlii DSM 13528] Length = 476 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 64/226 (28%), Positives = 104/226 (46%), Gaps = 36/226 (15%) Query: 156 NKTKICLDRDYVDERLTVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATK 207 NKT + L + V+ + G+ I I N SF Q N I +L Sbjct: 269 NKTNVILGKKCVN----LWGQDTIRDAIGNFKFNISPLSFFQVNP-IQTEVLYSKALEYA 323 Query: 208 GIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265 G+ G+ + + YCG G SL L++ +V VEI +++ AR N N VNNV+ + Sbjct: 324 GLSGNEVVFDAYCGTGTISLFLSQKSKKVYGVEIIDEAIKNARINAEQNGVNNVEFITGK 383 Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH-----ILY 320 S+ + ++ + + VDPPR G D +G+++A ++Y Sbjct: 384 SEVV------------IPELISKGIKADVVVVDPPRKGCD---MGLLKAIADMEPRTVVY 428 Query: 321 ISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRK 365 +SC+P +L RDL++L + + + D F T H+E VL+ RK Sbjct: 429 VSCDPATLARDLAVLRELGYMTKEVQPVDMFAQTAHVETVVLMSRK 474 >gi|269794934|ref|YP_003314389.1| SAM-dependent methyltransferase, tRNA(uracil-5)-methyltransferase [Sanguibacter keddieii DSM 10542] gi|269097119|gb|ACZ21555.1| SAM-dependent methyltransferase, tRNA(uracil-5)-methyltransferase [Sanguibacter keddieii DSM 10542] Length = 442 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 63/213 (29%), Positives = 104/213 (48%), Gaps = 25/213 (11%) Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDL-----LELY 217 R V E +TV G + YR + F Q + + + VL AA G GDL ++LY Sbjct: 243 RRSVSETVTVDGEEISYRVAADGFWQVHREAPSLLAQVVLDAARGGADGDLTDATVVDLY 302 Query: 218 CGNGNFSLVLAR---HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274 G G F++ LA+ RV+A+E + +V+ AR N + + V + + Q +R Sbjct: 303 SGAGLFTVPLAKAVGQVGRVVAIEGDERAVKDARRN-----AHAFEQVELHVGQVDQVLR 357 Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDL 332 + D+ + +DPPR+G T+ + A I+Y++C+P +L RD+ Sbjct: 358 TA-GHGAIAGADV-------VVLDPPRTGAGAKTIAQIVALSPSRIVYVACDPAALARDI 409 Query: 333 SILST-THTIERLALFDQFPYTRHMECGVLLVR 364 + L+ + +E + FD FP T H+EC +L R Sbjct: 410 AYLAKDGYELESVRAFDLFPMTHHVECVAVLTR 442 >gi|167855793|ref|ZP_02478546.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Haemophilus parasuis 29755] gi|167853072|gb|EDS24333.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Haemophilus parasuis 29755] Length = 446 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 47/156 (30%), Positives = 78/156 (50%), Gaps = 16/156 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS-SKEFTQ 271 +L+L+CG GNF+L +A + V+ +E +P V A+ N N +NN K + K F Sbjct: 297 VLDLFCGMGNFTLPIAPFVEEVVGIEGVEPMVAQAKQNAQTNQINNAKFYQTDLDKPFVD 356 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH-ILYISCNPDSLCR 330 + FN+ +DP R+G A + + P I+Y+SCNP +L R Sbjct: 357 QPWAKAYFNK-------------ALLDPARNGAYFALDHLCELQPERIVYVSCNPATLVR 403 Query: 331 DL-SILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 D +++ + + + A+ D FP+T H+E L R+ Sbjct: 404 DAEKLIAKGYRLSQSAMIDMFPHTAHLESISLFERR 439 >gi|90408288|ref|ZP_01216453.1| 23S rRNA (uracil-5-)-methyltransferase [Psychromonas sp. CNPT3] gi|90310589|gb|EAS38709.1| 23S rRNA (uracil-5-)-methyltransferase [Psychromonas sp. CNPT3] Length = 445 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 58/181 (32%), Positives = 92/181 (50%), Gaps = 14/181 (7%) Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 F Q NA +N M++ + + D +L+L+CG GNF+L +AR +V+ VE + VE Sbjct: 275 FLQVNAQVNQKMVKQAIQWLALDENDTVLDLFCGLGNFTLPIARQVKKVVGVEGVQQMVE 334 Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD 305 A +N N+VNN EF QA + N + +F + +DP R+G Sbjct: 335 RASHNAQLNNVNN--------SEFYQA---DLSSNDIYKQQWAQQKFTKVLLDPARAGAF 383 Query: 306 DATVGMVQ-AYPHILYISCNPDSLCRD-LSILSTTHTIERLALFDQFPYTRHMECGVLLV 363 + + HI+YI+C+ +L RD +L + +++L L D FP T+HME L + Sbjct: 384 NCMEFIASLEVSHIVYIACDAVTLARDSYLLLEKGYKLDKLGLLDMFPQTKHMESMALFL 443 Query: 364 R 364 R Sbjct: 444 R 444 >gi|257066182|ref|YP_003152438.1| RNA methyltransferase, TrmA family [Anaerococcus prevotii DSM 20548] gi|256798062|gb|ACV28717.1| RNA methyltransferase, TrmA family [Anaerococcus prevotii DSM 20548] Length = 415 Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 45/156 (28%), Positives = 82/156 (52%), Gaps = 19/156 (12%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 LL+L+CG+G S+ L + D ++ +EI K +++ A+ N N++ + K + ++ Q Sbjct: 275 LLDLFCGSGISSIAL--NDDNIVGIEINKSAIKDAKENAKINNLTDYKFIDKNANYIDQK 332 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCR 330 I + +T+ VDPPR+GLD + + +I+YISCNP +L R Sbjct: 333 F-------------IEKEKIQTVTVDPPRAGLDKEIIKTLAKTKIKNIIYISCNPQTLAR 379 Query: 331 DLS-ILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 D+ + + ++ + D FP T H+E + L++K Sbjct: 380 DIKRFMDRGYELKEIKAVDMFPQTMHVE-AIALIQK 414 >gi|120603103|ref|YP_967503.1| RNA methyltransferase [Desulfovibrio vulgaris DP4] gi|120563332|gb|ABM29076.1| 23S rRNA m(5)U-1939 methyltransferase [Desulfovibrio vulgaris DP4] Length = 468 Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 46/153 (30%), Positives = 76/153 (49%), Gaps = 11/153 (7%) Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274 +LYCG G+ +L LA H + +E SVEAA+ N A + V + ++ Sbjct: 315 DLYCGVGSITLWLAEHAATICGMEATPASVEAAQRNAQAAGCTHCDFVAGDVRALLRSRS 374 Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGL-DDATVGMVQAYP-HILYISCNPDSLCRDL 332 + + + D+ + DPPR+G+ D ++Q P I+Y+SC+P ++ RD+ Sbjct: 375 KGKAQEPIPDV---------VVTDPPRAGMHPDVIDALLQTAPARIVYVSCDPATMARDV 425 Query: 333 SILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 +L +T+ D FP+T H+E VLL K Sbjct: 426 GLLMQRYTLHEARPVDLFPHTPHVETVVLLSNK 458 >gi|50421187|ref|XP_459139.1| DEHA2D15114p [Debaryomyces hansenii CBS767] gi|49654806|emb|CAG87310.1| DEHA2D15114p [Debaryomyces hansenii] Length = 566 Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 79/161 (49%), Gaps = 21/161 (13%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L++ YCG+G FS+ ++ RV+ VE++ SV+ A N NH+ N + Sbjct: 418 LVDAYCGSGLFSITCSQGVSRVIGVEVSADSVKFAELNAKNNHIENATFI---------V 468 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330 + E+ F +ID + R + +DPPR G DD + + Y I+YISCN S R Sbjct: 469 GKAEKIFG---NIDTPADR-TAVILDPPRKGCDDVFLNQLSEYHPARIVYISCNVHSQAR 524 Query: 331 DLS--ILSTTHT----IERLALFDQFPYTRHMECGVLLVRK 365 D+ I T H +E + FD FP T H+E +L K Sbjct: 525 DVDWFINKTKHGQDYFVESIKGFDFFPQTHHVESIAVLALK 565 >gi|253700779|ref|YP_003021968.1| RNA methyltransferase, TrmA family [Geobacter sp. M21] gi|251775629|gb|ACT18210.1| RNA methyltransferase, TrmA family [Geobacter sp. M21] Length = 438 Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 63/196 (32%), Positives = 94/196 (47%), Gaps = 20/196 (10%) Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHML----EWVLAATKGIQGDLLELYCGNGN 222 V L R + R F+Q N N+ ++ EW A +G++ +L+LYCGNGN Sbjct: 250 VPAGLFPGSREVRLRFSRGGFSQVNYRQNLELIKTVGEWG-APREGVR--VLDLYCGNGN 306 Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282 S+ LA V+ VE PS+ A N AN V N +S + A R + Sbjct: 307 ISVPLAPLVGEVVGVEGYAPSIVDAAANAEANGVAN------ASYQVGDAALSVRRLAKR 360 Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLS-ILSTTHTI 341 K+ +F + +DPPR+G + A + A ILY+SC+P +L RDL+ + + + Sbjct: 361 KE------KFDMVVLDPPRAGAEAAGELALLAPERILYVSCDPATLARDLAQLCGAGYRV 414 Query: 342 ERLALFDQFPYTRHME 357 R D FP T H+E Sbjct: 415 ARSKPVDMFPQTYHLE 430 >gi|197302873|ref|ZP_03167925.1| hypothetical protein RUMLAC_01602 [Ruminococcus lactaris ATCC 29176] gi|197298110|gb|EDY32658.1| hypothetical protein RUMLAC_01602 [Ruminococcus lactaris ATCC 29176] Length = 555 Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 54/156 (34%), Positives = 77/156 (49%), Gaps = 8/156 (5%) Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274 +LYCG G SL LA+ +V VEI ++E A+ N N +NN ++E Sbjct: 314 DLYCGIGTISLFLAQKAKQVYGVEIVPQAIEDAKNNAKINEINNAAFYVGKAEEVLPDYY 373 Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCRDL 332 E K R I VDPPR G D+ + +V+ P ++Y+SC+ +L RDL Sbjct: 374 EE----YAKTHGGEKARADVIVVDPPRKGCDETLLETIVKMEPEKVVYVSCDSATLARDL 429 Query: 333 SIL-STTHTIERLALFDQFPYTRHMECGVLLV-RKP 366 L + I ++ DQFP T H+E VLL +KP Sbjct: 430 KYLCENGYEIRKVRGVDQFPETVHVETVVLLSQQKP 465 >gi|161508136|ref|YP_001578104.1| methyltransferase [Lactobacillus helveticus DPC 4571] gi|160349125|gb|ABX27799.1| Methyltransferase [Lactobacillus helveticus DPC 4571] Length = 448 Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 57/203 (28%), Positives = 93/203 (45%), Gaps = 20/203 (9%) Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFS 224 Y+D+++ L + SF Q N+ H+ + + + DL+ + Y G G Sbjct: 258 YIDDKIG----DLTFEISPQSFFQINSLQTPHLYKLAINQAGLTKDDLIVDAYSGIGTIG 313 Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284 L A++ V VE+ K +V+ A+ N N ++N K ++E E Sbjct: 314 LSAAKYVKEVRGVEVIKAAVKDAKNNARLNQIHNAKYYVGKAEELMPKWAAE-------- 365 Query: 285 IDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCRDLSIL-STTHTI 341 + IFVDPPR GL + V+ P ++YISCNP +L RD+ +L +T Sbjct: 366 ----GLKTDVIFVDPPRKGLTKEFIDAAVKTGPKKVVYISCNPATLVRDMQLLMEAGYTT 421 Query: 342 ERLALFDQFPYTRHMECGVLLVR 364 + ++ D FP T H+E +L R Sbjct: 422 DLVSPVDMFPQTPHVESVTVLER 444 >gi|46579337|ref|YP_010145.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Desulfovibrio vulgaris str. Hildenborough] gi|51316680|sp|Q72DK5|Y924_DESVH RecName: Full=Uncharacterized RNA methyltransferase DVU_0924 gi|46448751|gb|AAS95404.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Desulfovibrio vulgaris str. Hildenborough] gi|311233164|gb|ADP86018.1| RNA methyltransferase, TrmA family [Desulfovibrio vulgaris RCH1] Length = 468 Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 46/153 (30%), Positives = 76/153 (49%), Gaps = 11/153 (7%) Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274 +LYCG G+ +L LA H + +E SVEAA+ N A + V + ++ Sbjct: 315 DLYCGVGSIALWLAEHAATICGMEATPASVEAAQRNAQAAGCTHCDFVAGDVRALLRSRS 374 Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGL-DDATVGMVQAYP-HILYISCNPDSLCRDL 332 + + + D+ + DPPR+G+ D ++Q P I+Y+SC+P ++ RD+ Sbjct: 375 KGKAQEPIPDV---------VVTDPPRAGMHPDVIDALLQTAPARIVYVSCDPATMARDV 425 Query: 333 SILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 +L +T+ D FP+T H+E VLL K Sbjct: 426 GLLMQRYTLHEARPVDLFPHTPHVETVVLLSNK 458 >gi|227496372|ref|ZP_03926662.1| 23S rRNA methyluridine methyltransferase [Actinomyces urogenitalis DSM 15434] gi|226834099|gb|EEH66482.1| 23S rRNA methyluridine methyltransferase [Actinomyces urogenitalis DSM 15434] Length = 410 Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 52/155 (33%), Positives = 79/155 (50%), Gaps = 16/155 (10%) Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274 +L+CG G F+L LA +VL VE++ P+++ AR + R+ + QA R Sbjct: 269 DLFCGVGGFALALAGPGRQVLGVEVSAPAIDGAR-----------QAARLMGLD-AQAAR 316 Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDL 332 E R+ D + + ++PPR G+ +++ +LY SCNP SL RDL Sbjct: 317 FEAGDARVLDPGAGAVP-DLLVLNPPRRGIGQDLAARIESAGVERVLYSSCNPASLARDL 375 Query: 333 SILSTTHTIERLALFDQFPYTRHMECGVLLVRKPS 367 +S ++T R LFD FP+T H E + L R PS Sbjct: 376 EAMS-SYTAVRAQLFDMFPHTDHAEVLIELRRSPS 409 >gi|295104063|emb|CBL01607.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Faecalibacterium prausnitzii SL3/3] Length = 476 Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 63/198 (31%), Positives = 93/198 (46%), Gaps = 20/198 (10%) Query: 172 TVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLAR 229 T+ G+T Y SF Q N + + A K + G +L+ YCG G L A Sbjct: 200 TLCGKT--YAISPRSFYQVNPAQTAVLYGLAVEAAK-LTGKEVVLDAYCGIGTIGLTAAD 256 Query: 230 HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHS 289 H +V+ VE+ + +V+ A N A H N VK R + + T+ +R D+ Sbjct: 257 HAKQVVGVELNRDAVQDAIGN--ARH-NGVKNARFFAADATRWIREAAAAGEKADV---- 309 Query: 290 YRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST-THTIERLAL 346 IF+DPPR G + V A ++Y+SCNP +L RDL+ L+ + E Sbjct: 310 -----IFMDPPREGSTPEFLASVARMAPKRVVYVSCNPVTLARDLATLTKLGYKAEGFTP 364 Query: 347 FDQFPYTRHMECGVLLVR 364 D FP+T H+E VLL + Sbjct: 365 VDMFPHTEHVETVVLLSK 382 >gi|29840640|ref|NP_829746.1| RNA methyltransferase [Chlamydophila caviae GPIC] gi|50401542|sp|Q821Q5|Y883_CHLCV RecName: Full=Uncharacterized RNA methyltransferase CCA_00883 gi|29834990|gb|AAP05624.1| RNA methyltransferase, TrmA family, putative [Chlamydophila caviae GPIC] Length = 401 Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 59/213 (27%), Positives = 111/213 (52%), Gaps = 28/213 (13%) Query: 166 YVDERLTVA--GRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNG 221 ++ + LT+ G + ++ SF QP + ++E + QG LL+LYCG G Sbjct: 205 FIKQTLTLPKDGNSGVFHVRPRSFFQPQSLQGAKIIE-IAKEFMNPQGSETLLDLYCGAG 263 Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSKEFTQAMRREREFN 280 ++L+ + +V+ VEI ++++A+ NI N N +++ +K F RR ++ Sbjct: 264 TIGIMLSAYVKKVIGVEIVPDAIDSAKENILINKKENLIEVYLEDAKTFC---RRHQD-- 318 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNP----DSLCRDLSI 334 D+ + +DPPR G+ + + +++ +P I+YISCNP + C S+ Sbjct: 319 -CPPPDV-------VVIDPPRCGIQNKVLKYLLRIFPKKIIYISCNPKIQFEECC---SL 367 Query: 335 LSTTHTIERLALFDQFPYTRHMECGVLLVRKPS 367 +S + I+++ DQFP++ H+E +LL R+ S Sbjct: 368 ISAGYHIKKVQPLDQFPHSPHLENIILLEREDS 400 >gi|253316906|ref|ZP_04840119.1| RNA methyltransferase-like protein [Staphylococcus aureus subsp. aureus str. CF-Marseille] Length = 453 Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 46/152 (30%), Positives = 70/152 (46%), Gaps = 14/152 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +L+ YCG G L +A H V VE+ S+E A+ N N NN V ++E Sbjct: 311 VLDTYCGIGTIGLYMAPHAKHVYGVEVVPSSIEDAQQNATINQCNNTTFVCGKAEEVILQ 370 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330 + + + + VDPPR G D+ + ++ P I+YISCNP + R Sbjct: 371 WKAQ------------GIKSDVVMVDPPRKGCDETFIQTLLTLEPKRIVYISCNPATQQR 418 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLL 362 D +L+ + +E + D FP T H+E L Sbjct: 419 DALLLAEKYQLEEVTPVDMFPQTTHVETVALF 450 >gi|237725460|ref|ZP_04555941.1| RNA methyltransferase [Bacteroides sp. D4] gi|229436147|gb|EEO46224.1| RNA methyltransferase [Bacteroides dorei 5_1_36/D4] Length = 473 Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 55/183 (30%), Positives = 91/183 (49%), Gaps = 14/183 (7%) Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 SF Q N+G ++ + + +L+ +LY G G + ++R +V+ +E ++ Sbjct: 301 SFYQTNSGQAYNLYKVARNFARLTGNELVYDLYTGTGTIANFVSRQAKKVIGIEYVPEAI 360 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 E A+ N A N ++N K+ +EF I H R I DPPR+G+ Sbjct: 361 EDAKVNSAINGIDNTLFYAGDMKDILT-----QEF-----ISQHG-RPDVIITDPPRAGM 409 Query: 305 -DDATVGMVQAYPH-ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362 DD ++ A P I+Y+SCNP + RDLS+L + + + D FP+T H+E VLL Sbjct: 410 HDDVINTILFAEPQRIVYVSCNPATQARDLSLLDAKYKVMAVQPVDMFPHTHHVENVVLL 469 Query: 363 VRK 365 ++ Sbjct: 470 EKR 472 >gi|328464298|gb|EGF35727.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus rhamnosus MTCC 5462] Length = 131 Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 45/128 (35%), Positives = 67/128 (52%), Gaps = 16/128 (12%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ Y G G SL +ARH +V VE+ + +V A+ N A NH+ NV + Sbjct: 8 VIDAYSGIGTISLTMARHAKQVYGVEVVESAVRDAKANAARNHIKNVTF---------EV 58 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA---TVGMVQAYPHILYISCNPDSLC 329 + E + KD D+ + VDPPR GLD VG ++ P ++YISCNP +L Sbjct: 59 GKAEDVMQKWKDADLP---VDVLMVDPPRKGLDKTFIDAVGYMKP-PKMVYISCNPATLA 114 Query: 330 RDLSILST 337 RDL +L+ Sbjct: 115 RDLQLLAA 122 >gi|259047667|ref|ZP_05738068.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Granulicatella adiacens ATCC 49175] gi|259035858|gb|EEW37113.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Granulicatella adiacens ATCC 49175] Length = 467 Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 97/387 (25%), Positives = 160/387 (41%), Gaps = 54/387 (13%) Query: 10 YEQQLAEKVDRLRQMMLAF-QVPNLQIFRS----EPIHYRMRAEFHIWHDGDDLYHIMFD 64 YE QLA K +++ +M ++P L++ R+ + YR +A+ + L F Sbjct: 103 YESQLAFKQQQVKNVMTKIAKMPELEVRRALGMESALGYRNKAQIPVRTVDGLLTTGFFK 162 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLL-------RAKLFQIDYLTSQSDQA 117 + + + + ++ F I+ L++ + +R P++ L I + Sbjct: 163 KNSHDLIPMENFHIQDPEIDRLIVAVRDILRKYPVVAYDEANHTGDLKHIIVRRGLRTKQ 222 Query: 118 IVTLIYHRLLDDAWRECAIRLRDALHARKYQIQ----------LIGRANKTKICLDRDYV 167 ++ + R E +R A H I ++GR +TK+ D Sbjct: 223 VMIIFVTRTKGLPQAEAIVRDITAAHPEVVSIVQNIQPKPTNVIMGR--ETKVLFGEDVY 280 Query: 168 DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLV 226 +E+L ++ SF Q N + + + A G+ +++ YCG G SL Sbjct: 281 EEKLF----EFTFKISARSFFQVNTVQTEVLYQQAIDAADLKGGETVVDAYCGIGTMSLA 336 Query: 227 LARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDID 286 AR +V A+EI ++ A+ N N V NV ++++ M R +E D+ Sbjct: 337 FARDAKKVYAMEIVDDAIVMAKENAKLNGVTNVHFETGAAEKI---MPRWKEEGIQPDV- 392 Query: 287 IHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTTHTIER- 343 I VDPPR GLD A + A I+Y+SCNP +L RDL H ER Sbjct: 393 --------IVVDPPRKGLDLAFIEAACATRPERIVYVSCNPATLARDL-----VHFKERG 439 Query: 344 -----LALFDQFPYTRHMECGVLLVRK 365 + D FP T H+E LL RK Sbjct: 440 YEAQYVQPVDMFPMTAHIEVVGLLERK 466 >gi|325849101|ref|ZP_08170593.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325480346|gb|EGC83409.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 508 Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 88/379 (23%), Positives = 166/379 (43%), Gaps = 55/379 (14%) Query: 2 SGTLLID-QYEQQLAEKVDRLRQMMLA---FQVPNLQIFRSEPIHYRMRAEFHIWHDGDD 57 G ++D Y+ Q+ K + ++ +L Q+ ++++ +S+ +YR + I DG Sbjct: 75 GGCSIMDINYKSQIKLKENLIKNALLKSAKIQLEDIEVLQSKEFYYRNKIRLQITKDGKL 134 Query: 58 LYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQA 117 Y+ + E + LL N L+ E + ++E + +K +Y S + Sbjct: 135 AYNKKYSNDLIE-------IKDCLLANDLIRENLG--KIENI--SKEISKNYPNSLEEIT 183 Query: 118 IVTLIYHRLLDDAWRECAI--RLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175 I LL+ ++ I ++ + I LI + E+L ++G Sbjct: 184 IRANDEEILLNIKIKDEKIIPYIKKQYKNSSFNINLINKK-------------EKLNISG 230 Query: 176 RT-LIYRQIENSFT---QPNAGINVHMLEWVLAATKGIQGD---LLELYCGNGNFSLVLA 228 + LIY ++ F +N +M E + K G+ +L+L+CG+ S+ + Sbjct: 231 KDYLIYNLLDKKFKISMNDFYQVNDYMTEKLYKTAKNFLGEDQKVLDLFCGSATSSIAI- 289 Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288 + D V+ +EI K +++ A+ N N + + K + + A + +F + + ID Sbjct: 290 -NDDHVVGIEINKNAIKDAKENAKINGLKDYKFIAKN------ANYIDHKFIKKEKID-- 340 Query: 289 SYRFKTIFVDPPRSGLDDA--TVGMVQAYPHILYISCNPDSLCRDLS-ILSTTHTIERLA 345 I VDPPR+GLD I+YISCNP +L RD++ + + +E++ Sbjct: 341 -----AIVVDPPRAGLDKEIIKTIAKTKIKKIVYISCNPQTLARDINRFQNKGYKLEKIK 395 Query: 346 LFDQFPYTRHMECGVLLVR 364 D F T H+E LL + Sbjct: 396 GCDMFSQTMHVETVALLSK 414 >gi|308189665|ref|YP_003922596.1| RNA methyltransferase protein [Mycoplasma fermentans JER] gi|307624407|gb|ADN68712.1| RNA methyltransferase protein [Mycoplasma fermentans JER] Length = 438 Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 52/155 (33%), Positives = 80/155 (51%), Gaps = 19/155 (12%) Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271 ++++ Y G G SL +A +V +EI K +V A+ N N++NNV EF + Sbjct: 296 NVVDAYSGIGTISLKIAEKVKKVYGLEIVKEAVINAKQNAKLNNINNV--------EFYE 347 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLC 329 + LK ID + TI +DPPR+G+ + +++ P I YISCNP +LC Sbjct: 348 G-------DVLKTIDNIKEKIDTIIIDPPRAGVSKEVLEKILKIEPKQIGYISCNPHTLC 400 Query: 330 RDLSI--LSTTHTIERLALFDQFPYTRHMECGVLL 362 RD+ + LS + +E L D F T H+E +L Sbjct: 401 RDIDLLTLSKKYKLEFLKPCDMFCQTHHVEIVAIL 435 >gi|304436318|ref|ZP_07396296.1| 23S rRNA (uracil-5-)-methyltransferase [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304370723|gb|EFM24370.1| 23S rRNA (uracil-5-)-methyltransferase [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 469 Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 48/158 (30%), Positives = 78/158 (49%), Gaps = 21/158 (13%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G +L LA+ +V +EI +P++ AR N NHV N + + + + A Sbjct: 321 VIDAYCGTGTITLFLAQRARKVYGIEIVQPAILDARKNARDNHVKNAEFIVGDATKVMPA 380 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP-----HILYISCNPDS 327 + ++ R + VDPPR+G T ++Q + I+Y+SCNP + Sbjct: 381 LYKQ------------GIRPDVVVVDPPRAG---CTPTVLQTFADMKPQRIVYVSCNPAT 425 Query: 328 LCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364 L RDL+IL + + + D FP T H+E L R Sbjct: 426 LARDLAILKEFGYHAQEVQPVDLFPQTSHVETITKLSR 463 >gi|237709870|ref|ZP_04540351.1| RNA methyltransferase [Bacteroides sp. 9_1_42FAA] gi|229455963|gb|EEO61684.1| RNA methyltransferase [Bacteroides sp. 9_1_42FAA] Length = 473 Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 55/183 (30%), Positives = 91/183 (49%), Gaps = 14/183 (7%) Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 SF Q N+G ++ + + +L+ +LY G G + ++R +V+ +E ++ Sbjct: 301 SFYQTNSGQAYNLYKVARNFARLTGNELVYDLYTGTGTIANFVSRQAKKVIGIEYVPEAI 360 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 E A+ N A N ++N K+ +EF I H R I DPPR+G+ Sbjct: 361 EDAKVNSAINGIDNTLFYAGDMKDILT-----QEF-----ISQHG-RPDVIITDPPRAGM 409 Query: 305 -DDATVGMVQAYPH-ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362 DD ++ A P I+Y+SCNP + RDLS+L + + + D FP+T H+E VLL Sbjct: 410 HDDVINTILFAEPQRIVYVSCNPATQARDLSLLDAKYKVMAVQPVDMFPHTHHVENVVLL 469 Query: 363 VRK 365 ++ Sbjct: 470 EKR 472 >gi|227874094|ref|ZP_03992301.1| TrmA family RNA methyltransferase [Oribacterium sinus F0268] gi|227840071|gb|EEJ50494.1| TrmA family RNA methyltransferase [Oribacterium sinus F0268] Length = 400 Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 51/159 (32%), Positives = 80/159 (50%), Gaps = 7/159 (4%) Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274 + YCG G SL LA+ +V +EI ++E A+ N N + N + +++E Sbjct: 243 DCYCGIGTISLFLAQKAKQVYGLEIVPEAIENAKKNAEKNGLQNAEFFVGAAEEVLPKWV 302 Query: 275 RE--REFN-RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYPH-ILYISCNPDSLC 329 E RE + + D I + +DPPR G D+A + V + P I+Y+SC+P SL Sbjct: 303 EEQKRELSAKGADCGIGDM-VDVVSLDPPRKGCDEACLSAVLELSPKRIVYVSCDPGSLA 361 Query: 330 RDLSILS-TTHTIERLALFDQFPYTRHMECGVLLVRKPS 367 RD+ L + +E+ D FP T H+E LL ++ S Sbjct: 362 RDIKYLGEGGYVLEKWVGIDNFPRTGHVETIALLQKEES 400 >gi|152974246|ref|YP_001373763.1| RNA methyltransferase [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152022998|gb|ABS20768.1| RNA methyltransferase, TrmA family [Bacillus cytotoxicus NVH 391-98] Length = 458 Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 87/385 (22%), Positives = 163/385 (42%), Gaps = 50/385 (12%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQ------IFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63 YE+QL +K D + Q + +L+ + +P HYR +++ + + + ++ Sbjct: 95 YEEQLNQKRDIVVQAFQKYMKNSLEEKIRPTLGMKDPWHYRNKSQLQVGRKDEKVITGLY 154 Query: 64 DQQTKERMRIDYFMPGSLLIN-----------ALMIEMMATIRLEPLLRAKLFQIDYLTS 112 +Q + + I + M N L I + + + L+R + ++ Sbjct: 155 EQNSHRLIDIAHCMIQHKATNEATKVVRRILEKLNISIYNERKGKGLIRTIVTRV---AV 211 Query: 113 QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLT 172 Q+ + +TLI + + ++ + A K +Q + KT + + D+ Sbjct: 212 QTGEVQITLITAKDEFPNKEQFIAEVQKQMPAVKSIMQNV-NGRKTSVI----FGDKTFH 266 Query: 173 VAGRTLIYRQIEN--------SFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGNGNF 223 +AG+ +I + + +F Q N V + E AA + +++ YCG G Sbjct: 267 LAGKEVIQETLGDLSFELSARAFFQLNPEQTVVLYNEAKKAAALTGKEKIVDAYCGVGTI 326 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 L LA V +++ ++ AR N + N K ++++ +E Sbjct: 327 GLWLANDAAEVRGMDVIPEAIADARKNAKRHGFTNTKYEAGKAEQWLPKWVKE------- 379 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDA---TVGMVQAYPHILYISCNPDSLCRDLSILSTTHT 340 + I VDPPR+G DD T+ VQ ++Y+SCNP SL RD+ L ++ Sbjct: 380 -----GWHPDVIVVDPPRTGCDDKLLETILKVQPKT-VVYVSCNPSSLARDVKTLMKSYE 433 Query: 341 IERLALFDQFPYTRHMECGVLLVRK 365 +E + D FP+T H+E VLL R+ Sbjct: 434 VEYVQPVDMFPHTAHVETIVLLQRR 458 >gi|77413725|ref|ZP_00789907.1| RNA methyltransferase, TrmA family [Streptococcus agalactiae 515] gi|77160216|gb|EAO71345.1| RNA methyltransferase, TrmA family [Streptococcus agalactiae 515] Length = 451 Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 92/386 (23%), Positives = 162/386 (41%), Gaps = 52/386 (13%) Query: 9 QYEQQLAEKVDRLRQMMLAFQ---VPNLQIFRS----EPIHYRMRAEFHIWHDGDDLYHI 61 QY++QL K D +RQ ++ F+ N +I ++ EP HYR + +F + G ++ Sbjct: 88 QYDKQLEFKTDVIRQALMKFKPEGYENYEIRKTIGMPEPEHYRAKLQFQVRSFGGNVRAG 147 Query: 62 MFDQQTKERMRIDYFMPGSLLINALM---IEMMATIRLEPLLRAKLFQIDYLTSQSDQA- 117 ++ Q T + I + L ++ E++ +L K+ + + + QA Sbjct: 148 LYAQGTHRLIDIKDCLVQDRLTQEMINRVAELLGKYKLPIYNERKIAGVRTVMIRRAQAS 207 Query: 118 ----IVTLIYHRL-LDDAWRECAIRLRDALHARKYQIQLIGRANK------TKICLDRDY 166 ++ + RL DD E +R+ + + + T++ ++ Sbjct: 208 GEIQLIFITSKRLDFDDVVIEL---VREFPELKTVAVNINASKTSDIYGQITEVIWGQES 264 Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAG-INVHMLEWVLAATKGIQGDLLELYCGNGNFSL 225 ++E + G +L R +F Q N + E V A DL++ YCG G L Sbjct: 265 INEEVLDYGFSLSPR----AFYQLNPKQTQILYSEAVNALDVKEDDDLIDAYCGVGTIGL 320 Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285 A V ++I +++ A+ N A H+ FT E + +DI Sbjct: 321 AFAGKVKSVRGMDIIPEAIQDAKEN--ALHMG-----------FTNT---HYEAGKAEDI 364 Query: 286 D----IHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILSTTH 339 +R + VDPPR+GLDD + + P ++Y+SCN +L RDL L+ + Sbjct: 365 IPRWYSEGFRANALIVDPPRTGLDDKLLNTILKMPPEKMVYVSCNTSTLARDLVTLTKVY 424 Query: 340 TIERLALFDQFPYTRHMECGVLLVRK 365 + + D FP+T E V L RK Sbjct: 425 HVHYIQSVDMFPHTARTEAVVKLQRK 450 >gi|301052142|ref|YP_003790353.1| TrmA family RNA methyltransferase [Bacillus anthracis CI] gi|300374311|gb|ADK03215.1| RNA methyltransferase, TrmA family [Bacillus cereus biovar anthracis str. CI] Length = 459 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 47/155 (30%), Positives = 76/155 (49%), Gaps = 14/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G L LA V +++ ++ AR N + N K ++++ Sbjct: 317 IVDAYCGVGTIGLWLANDAAEVRGMDVIPEAIADARKNAKRHGFTNTKYEAGKAEQWLPK 376 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCR 330 +E +R I VDPPR G DD + +++ P ++Y+SCNP SL R Sbjct: 377 WVKE------------GWRPDVIVVDPPRIGCDDKLLETILKVKPKQVVYVSCNPSSLAR 424 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 D+ L ++ +E + D FP+T H+E V LVRK Sbjct: 425 DVQALMKSYEVEYVQPVDMFPHTAHVENVVKLVRK 459 >gi|187735352|ref|YP_001877464.1| RNA methyltransferase, TrmA family [Akkermansia muciniphila ATCC BAA-835] gi|187425404|gb|ACD04683.1| RNA methyltransferase, TrmA family [Akkermansia muciniphila ATCC BAA-835] Length = 407 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 46/155 (29%), Positives = 81/155 (52%), Gaps = 16/155 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L++ YCG+G F+L LA+ F +VL VE+++ S + AR N +N + + + + + Sbjct: 264 LVDAYCGSGLFALSLAKKFKKVLGVEVSETSADWARSNARSNGIEHAEFLAADAGAI--- 320 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330 F R +D + + + +DPPR G + + A+ ++Y+SCNP + R Sbjct: 321 ------FAR---VDFPAEK-TAVVIDPPRKGCSAEFLAQLFAFGPGKVVYVSCNPATQIR 370 Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364 DL+ + + + FD FP T+H+EC V L + Sbjct: 371 DLAEFDKAGYFVTAVQPFDLFPQTKHLECVVTLKK 405 >gi|300813136|ref|ZP_07093513.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300495890|gb|EFK31035.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 448 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 57/203 (28%), Positives = 93/203 (45%), Gaps = 20/203 (9%) Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFS 224 Y+D+++ L + SF Q N+ + + + + DL+ + Y G G Sbjct: 261 YIDDKIG----DLTFEISPQSFFQINSLQTPRLYKLAIDQAGLTKDDLIVDAYSGIGTIG 316 Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284 L A++ V VE+ K +V+ A+ N N ++N K ++E E Sbjct: 317 LSAAKYVKEVRGVEVVKAAVKDAKNNARLNQIHNAKYYAGKAEELMPKWAAE-------- 368 Query: 285 IDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCRDLSIL-STTHTI 341 + IFVDPPR GL + V+ P ++YISCNP +L RD+ +L +T Sbjct: 369 ----GLKTDVIFVDPPRKGLTKEFIDAAVKTGPKKVVYISCNPATLVRDMQLLMEAGYTT 424 Query: 342 ERLALFDQFPYTRHMECGVLLVR 364 + ++ D FP T H+E VL+ R Sbjct: 425 DLVSPVDMFPQTPHVETVVLMSR 447 >gi|169825840|ref|YP_001695998.1| putative RNA methyltransferase [Lysinibacillus sphaericus C3-41] gi|168990328|gb|ACA37868.1| Hypothetical RNA methyltransferase [Lysinibacillus sphaericus C3-41] Length = 459 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 50/155 (32%), Positives = 77/155 (49%), Gaps = 17/155 (10%) Query: 209 IQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266 +QGD +++ YCG G SL LA+ V+ VEI ++E A+ N N N + Sbjct: 310 LQGDERVIDAYCGIGTISLFLAQKARAVMGVEIVPQAIEDAKRNAVLNGFTNTYFEAGPA 369 Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA--TVGMVQAYPHILYISCN 324 +E R + K+ D+ + VDPPR G D+A T + Q ++Y+SCN Sbjct: 370 EEVI-----PRWYKEGKEADV-------LVVDPPRKGCDEALLTTILEQRPKRVVYVSCN 417 Query: 325 PDSLCRDLSIL-STTHTIERLALFDQFPYTRHMEC 358 P +L RDL IL + + + + D FP++ H E Sbjct: 418 PATLARDLRILENGGYQTQEIQPVDMFPHSTHCEA 452 >gi|160946481|ref|ZP_02093690.1| hypothetical protein PEPMIC_00445 [Parvimonas micra ATCC 33270] gi|158447597|gb|EDP24592.1| hypothetical protein PEPMIC_00445 [Parvimonas micra ATCC 33270] Length = 450 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 58/213 (27%), Positives = 98/213 (46%), Gaps = 23/213 (10%) Query: 157 KTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-E 215 K I ++Y+ E++ L ++ SF QPN +++ + I+ ++ + Sbjct: 257 KINIIFGKEYITEKIF----DLEFKVTPFSFFQPNVFGAINLYSKAIELCGDIENKVVFD 312 Query: 216 LYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275 LY G G ++AR V +EI + +VE+A + N + N + E + Sbjct: 313 LYSGTGTIGQIVARKAKAVYGIEIVEEAVESANKSAKENGLTNCTFIAGDVLEEIE---- 368 Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLS 333 NR + +D+ I VDPPR G++ + + I+YISCNP + RD+ Sbjct: 369 ----NRKEMVDV-------IIVDPPRDGINQKALEKIISCGAKTIVYISCNPKTQKRDIQ 417 Query: 334 I-LSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 I L + + L +F+QFP T H E LL R+ Sbjct: 418 ILLQNGYKLITLKIFNQFPRTVHCEAVALLERR 450 >gi|325836777|ref|ZP_08166244.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Turicibacter sp. HGF1] gi|325491155|gb|EGC93444.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Turicibacter sp. HGF1] Length = 459 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 65/216 (30%), Positives = 94/216 (43%), Gaps = 22/216 (10%) Query: 155 ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-- 212 KT I Y+ + + G + R SF Q N + L G+ G+ Sbjct: 259 GEKTNIIYGEGYIYDEMNGIGFAISPR----SFYQVNP-VQTETLYSKAVEFAGLTGEEI 313 Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + + YCG G +L LA+H +V VEI ++ A N N N + S+E A Sbjct: 314 VFDAYCGIGTITLFLAQHAKKVYGVEIIPEAIADANMNAKLNGFENTEFAVGKSEEVIPA 373 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330 E + D+ I VDPPR G D + M++A P I+Y+SC+ +L R Sbjct: 374 W---IEQGIVPDV---------IVVDPPRKGCDKTLLDTMLEAAPKRIVYVSCDSSTLAR 421 Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRK 365 D+ IL + +E D FP T H+E LL RK Sbjct: 422 DIKILVDGGYQLEVAQPVDMFPQTSHVEVVALLTRK 457 >gi|329943219|ref|ZP_08291993.1| tRNA (Uracil-5-)-methyltransferase family protein [Chlamydophila psittaci Cal10] gi|332287799|ref|YP_004422700.1| putative tRNA(Uracil-5-)-methyltransferase protein [Chlamydophila psittaci 6BC] gi|313848371|emb|CBY17375.1| putative RNA methyltransferase [Chlamydophila psittaci RD1] gi|325507335|gb|ADZ18973.1| putative tRNA(Uracil-5-)-methyltransferase protein [Chlamydophila psittaci 6BC] gi|328814766|gb|EGF84756.1| tRNA (Uracil-5-)-methyltransferase family protein [Chlamydophila psittaci Cal10] gi|328915057|gb|AEB55890.1| RNA methyltransferase, TrmA family [Chlamydophila psittaci 6BC] Length = 401 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 56/210 (26%), Positives = 108/210 (51%), Gaps = 26/210 (12%) Query: 166 YVDERLTVA--GRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNG 221 ++ ++L++ G + ++ SF QP ++E + QG LL+LYCG G Sbjct: 205 FIKQKLSLPKDGNSAVFHVRPRSFFQPQTLQGAKIIE-IAKEFMDPQGSETLLDLYCGAG 263 Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281 ++L+++ +V+ VEI +V++A+ NI N ++ V + E + + + + Sbjct: 264 TIGIMLSKYVKKVIGVEIVPDAVDSAKENILINKKESLIEVHL---EDVKTFCKRHQDHP 320 Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNP----DSLCRDLSIL 335 D+ I +DPPR G+ + + +++ P I+YISCNP + C S++ Sbjct: 321 APDVAI---------IDPPRCGMQNKVLKYLIRISPKKIIYISCNPKIQFEECC---SLI 368 Query: 336 STTHTIERLALFDQFPYTRHMECGVLLVRK 365 S + I+++ DQFP++ H+E +LL R+ Sbjct: 369 SAGYRIKKVQPLDQFPHSPHLENIILLERE 398 >gi|329769944|ref|ZP_08261342.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Gemella sanguinis M325] gi|328837548|gb|EGF87174.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Gemella sanguinis M325] Length = 445 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 61/219 (27%), Positives = 102/219 (46%), Gaps = 28/219 (12%) Query: 155 ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-L 213 +KT+ +DY+ + L + R SF Q N + L K Q D + Sbjct: 247 GDKTENLYGKDYITDTLGGIEFKISLR----SFYQVNPIQTEVLYSKALELAKLNQDDTI 302 Query: 214 LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273 ++ YCG G SL A+ +V +EI + +V AR N N++ NV+ + S++ Sbjct: 303 IDAYCGIGTISLFAAQKVKKVYGIEIVEAAVLDARENAKNNNITNVEFLLGKSEDV---- 358 Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD------ATVGMVQAYPHILYISCNPDS 327 +KD+ + + VDPPR G ++ A++G+ I+Y+SCNP + Sbjct: 359 --------IKDLISKDVQIDAVIVDPPRKGCEESFLRDLASMGI----EKIVYVSCNPAT 406 Query: 328 LCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRK 365 L RD+ I+ + + + D FP T H+E LLV++ Sbjct: 407 LARDMEIMRGLGYKLGAVQPVDMFPGTYHVEAVSLLVKE 445 >gi|307260780|ref|ZP_07542467.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306869506|gb|EFN01296.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 442 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 55/185 (29%), Positives = 89/185 (48%), Gaps = 23/185 (12%) Query: 187 FTQPNAGINVHM----LEWV-LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241 F Q N +N M LEW+ L+A Q +L+L+CG GNF+L +A+ V+ VE + Sbjct: 274 FIQVNGDLNEKMVDKALEWLDLSA----QDRVLDLFCGMGNFTLPIAKQAGFVVGVEGVE 329 Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301 P V A+ N + + NV + + E D S F + +DP R Sbjct: 330 PMVAQAKQNRDTSGLKNVAFYQTNLDE------------PFADKPWASEPFNKVLLDPAR 377 Query: 302 SGLDDATVGMVQAYPH-ILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHMECG 359 +G + + P I+Y+SCNP +L RD ++ + +++ A+ D FP+T H+E Sbjct: 378 NGAFFSLDHLAALNPGTIVYVSCNPATLVRDAEKLIQAGYKLQKAAMIDMFPHTGHLESI 437 Query: 360 VLLVR 364 L + Sbjct: 438 SLFTK 442 >gi|146293860|ref|YP_001184284.1| 23S rRNA 5-methyluridine methyltransferase [Shewanella putrefaciens CN-32] gi|226725391|sp|A4Y952|RUMA_SHEPC RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|145565550|gb|ABP76485.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Shewanella putrefaciens CN-32] Length = 450 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 55/186 (29%), Positives = 89/186 (47%), Gaps = 26/186 (13%) Query: 185 NSFTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240 +F Q N+ IN M ++W+ A +L+L+CG GNFSL LA+ V+ VE Sbjct: 279 GNFVQVNSQINKAMVAQAMDWLAPAP---DERILDLFCGMGNFSLPLAKMGADVIGVEGV 335 Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY--RFKTIFVD 298 V AR N AN+++ + + D+ + + + + +D Sbjct: 336 AEMVSQARVNAKANNLDKLTFYHG---------------DLSADLSLEPWMGKIDKLLLD 380 Query: 299 PPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDLSI-LSTTHTIERLALFDQFPYTRHM 356 P R+G ++ + + P +LY+SCNP SL RD ++ L + ++RL L D FP T H+ Sbjct: 381 PARAGAFESLQWLKKMKPRKVLYVSCNPASLARDSTVLLERGYRLQRLGLIDMFPQTHHI 440 Query: 357 ECGVLL 362 E L Sbjct: 441 EAMALF 446 >gi|291539998|emb|CBL13109.1| 23S rRNA m(5)U-1939 methyltransferase [Roseburia intestinalis XB6B4] Length = 492 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 68/271 (25%), Positives = 119/271 (43%), Gaps = 38/271 (14%) Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD 165 Q++ L+ +++ A++ +L ++ + L+ LH + + + T I +D Sbjct: 223 QMEELSGENESALLEGWVKKLCEEKYDGV---LKGILHTKNDSVADTIKNEGTDILFGQD 279 Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLE---------L 216 + E L L ++ SF Q N+ E + + GD L+ L Sbjct: 280 FFYEELL----GLKFKITPFSFFQTNS----LGAEVLYQTAREFIGDALDDEANQTVFDL 331 Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276 Y G G + +L+ +V+ VEI + +V AAR N A N + N + + Sbjct: 332 YSGTGTIAQILSPVAKKVIGVEIVEEAVVAARENAALNGLTNCEFIAG------------ 379 Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSI 334 + LK ID + I +DPPR G+ + + Y P ++YISC P SL RDL + Sbjct: 380 ---DVLKVIDTIGEKPDYIVLDPPRDGIHPKALEKIIRYNVPQMVYISCKPTSLARDLEV 436 Query: 335 LST-THTIERLALFDQFPYTRHMECGVLLVR 364 L + ++++ D FP T ++E LL + Sbjct: 437 LQARGYKVKKVQCVDMFPSTGNVETVCLLSK 467 >gi|55820468|ref|YP_138910.1| TrmA family tRNA methyltransferase [Streptococcus thermophilus LMG 18311] gi|55736453|gb|AAV60095.1| tRNA methyltransferase, TrmA family [Streptococcus thermophilus LMG 18311] Length = 454 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 85/388 (21%), Positives = 157/388 (40%), Gaps = 56/388 (14%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPNLQIFR-------SEPIHYRMRAEFHIWHDGDDLYHI 61 +Y++QL K D L Q + F+ N + + +P HYR + +F I G + Sbjct: 88 RYDKQLEFKTDLLGQALKKFKPANFESYEIRPTIGMKQPQHYRAKLQFQIRSFGGSVKAG 147 Query: 62 MFDQQTKERMRIDYFMPGSLLINALM-------------------IEMMATIRLEPLLRA 102 +F + + + ID + L A+M I + T+ + L + Sbjct: 148 LFAEGSHRLINIDDCLVQDELTQAIMNKVTNLLDKYKLPIYNERKISGIRTVMIRRALGS 207 Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162 Q+ ++TS + ++ L+ L ++ E + +++ I +T+I Sbjct: 208 NQVQLIFVTS-NPVSLTKLVKELTL--SYPEIVTVAVNYNYSKSSVIY----GQETEIIW 260 Query: 163 DRDYVDERL---TVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCG 219 +D + E + A + Q+ T+ G V LE + L++ YCG Sbjct: 261 GQDTIQEEVLDYNFALSPRAFYQLNPKQTEVLYGQAVEALEVDKSE------HLIDAYCG 314 Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279 G L A+ + ++I ++E AR N + ++N +++ +E Sbjct: 315 VGTIGLAFAKKVSTIRGMDIIPEAIEDARKNAESLGLDNAHYEVGKAEDIIPRWYKE--- 371 Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILST 337 YR + VDPPR+GLD + + Y ++Y+SCN +L RDL L+ Sbjct: 372 ---------GYRADALIVDPPRTGLDSKLLKTILEYTPKKMVYVSCNVSTLARDLVSLAK 422 Query: 338 THTIERLALFDQFPYTRHMECGVLLVRK 365 + + + D FP+T E V L +K Sbjct: 423 VYDVNYIQSVDMFPHTARTEAVVKLTKK 450 >gi|325280541|ref|YP_004253083.1| RNA methyltransferase, TrmA family [Odoribacter splanchnicus DSM 20712] gi|324312350|gb|ADY32903.1| RNA methyltransferase, TrmA family [Odoribacter splanchnicus DSM 20712] Length = 477 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 59/203 (29%), Positives = 97/203 (47%), Gaps = 24/203 (11%) Query: 175 GRTLIYRQIEN--------SFTQPNA--GINVHMLEWVLAATKGIQGDLLELYCGNGNFS 224 GR I+ ++E SF Q N+ N++ LA G Q + +LY G G + Sbjct: 277 GRDHIFEEMEGLKFKIGPKSFYQTNSEQAYNLYSKTRELAGLTG-QETVYDLYTGTGTIA 335 Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284 +AR +V+ +E ++E A+ N A NH++N K+ A ++ Sbjct: 336 NFIARQARKVIGIEYVPEAIEDAKVNSAINHIDNTIFYAGDMKDVLNASF----ISKHGQ 391 Query: 285 IDIHSYRFKTIFVDPPRSGL-DDATVGMVQAYPH-ILYISCNPDSLCRDLSILSTTHTIE 342 DI I DPPR+G+ D ++QA P I+Y+SCN + RDL ++ + + + Sbjct: 392 PDI-------IITDPPRAGMHPDVVQTILQASPERIVYVSCNSATQARDLQMMDSAYEVI 444 Query: 343 RLALFDQFPYTRHMECGVLLVRK 365 + D FP+T H+E VLL ++ Sbjct: 445 AVQPVDMFPHTHHVENIVLLRKR 467 >gi|284802149|ref|YP_003414014.1| hypothetical protein LM5578_1904 [Listeria monocytogenes 08-5578] gi|284995291|ref|YP_003417059.1| hypothetical protein LM5923_1856 [Listeria monocytogenes 08-5923] gi|284057711|gb|ADB68652.1| hypothetical protein LM5578_1904 [Listeria monocytogenes 08-5578] gi|284060758|gb|ADB71697.1| hypothetical protein LM5923_1856 [Listeria monocytogenes 08-5923] Length = 462 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 46/155 (29%), Positives = 73/155 (47%), Gaps = 16/155 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L++ YCG G A V ++I S+E A+ N N + NV +++ Sbjct: 315 LVDAYCGVGTIGQAFAGKVKEVRGMDIIPESIEDAKRNAEKNGIENVYYEVGKAEDVLPK 374 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM---VQAYPHILYISCNPDSLC 329 +E +R + VDPPRSG D + V+A ++Y+SCNP +L Sbjct: 375 WVKE------------GFRPDAVIVDPPRSGCDQGLIKSLLDVEAK-QLVYVSCNPSTLA 421 Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 RDL++L+ + I + D FP T H+E +L+ R Sbjct: 422 RDLALLAKKYRIRYMQPVDMFPQTAHVETVILMTR 456 >gi|241896472|ref|ZP_04783768.1| TrmA family tRNA (uracil-5-)-methyltransferase [Weissella paramesenteroides ATCC 33313] gi|241870194|gb|EER73945.1| TrmA family tRNA (uracil-5-)-methyltransferase [Weissella paramesenteroides ATCC 33313] Length = 469 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 64/189 (33%), Positives = 93/189 (49%), Gaps = 25/189 (13%) Query: 185 NSFTQPNAGINVHMLEWVLAATKG-IQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAK 241 NSF Q N + + LAA K + G+ +++ Y G G SL +A VL VE+ Sbjct: 296 NSFYQVNP--QTTEILYKLAADKAELTGNETVIDAYSGIGTISLTIADKVKSVLGVEVVP 353 Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301 +V+ A+ N N+V+NVK ++E A +++ + IFVDPPR Sbjct: 354 GAVDDAKRNADLNNVHNVKFELGKAEEKMVAWQQD------------GLKPDVIFVDPPR 401 Query: 302 SGLD----DATVGMVQAYPHILYISCNPDSLCRDLS-ILSTTHTIER-LALFDQFPYTRH 355 GL DA M A I+YISCNP +L RD++ +TI+ + DQFP T H Sbjct: 402 KGLTTELIDAASAM--APSKIVYISCNPATLVRDVAQFKENGYTIKGDVQPVDQFPQTTH 459 Query: 356 MECGVLLVR 364 +E +L R Sbjct: 460 IESVTVLER 468 >gi|226940771|ref|YP_002795845.1| RumA [Laribacter hongkongensis HLHK9] gi|226715698|gb|ACO74836.1| RumA [Laribacter hongkongensis HLHK9] Length = 516 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 60/204 (29%), Positives = 96/204 (47%), Gaps = 25/204 (12%) Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGN 220 LD + RL G + Y+ E FTQ N GIN ++ L G+ + +++CG Sbjct: 245 LDAPALCYRLPEFGVEMPYKPTE--FTQVNPGINRVLVSRALKLLDPQPGERIADMFCGL 302 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 GNF+L +AR VL +E ++ +E A N N + RM++ Sbjct: 303 GNFTLPIARSGAVVLGMEGSQQLIERAVQNATHNGLEKTVRYRMAN-------------- 348 Query: 281 RLKDIDIHSY----RFKTIFVDPPRSGLDDATVGMVQAYPH-ILYISCNPDSLCRDLSIL 335 L D+ S+ RF + +DPPR G + P I+Y+SC+P +L RD ++L Sbjct: 349 -LFDVTPESFAKLGRFDKMLIDPPRDGAVALCKSLGDNGPKRIVYVSCSPSTLARDAAVL 407 Query: 336 STT--HTIERLALFDQFPYTRHME 357 T +T+ + + FP+T H+E Sbjct: 408 VHTQGYTLRAAGIVNMFPHTAHVE 431 >gi|89095077|ref|ZP_01168004.1| 23S rRNA (uracil-5-)-methyltransferase [Oceanospirillum sp. MED92] gi|89080638|gb|EAR59883.1| 23S rRNA (uracil-5-)-methyltransferase [Oceanospirillum sp. MED92] Length = 449 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 56/182 (30%), Positives = 85/182 (46%), Gaps = 17/182 (9%) Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 F Q NA +N M+ + D +L+L+ G GNFSL LA V+ VE + V+ Sbjct: 281 FIQVNASVNTQMINRAMDWLDLKDNDRVLDLFSGVGNFSLPLATKAGSVIGVEGVEDMVQ 340 Query: 246 AARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 A+ N +NN + R SK+ LK + + F I +DPPR+G Sbjct: 341 RAQNNAKQAGLNNCEFYRADLSKD-------------LKALPWYKQGFSKILIDPPRTGA 387 Query: 305 DDATVGMVQ-AYPHILYISCNPDSLCRD-LSILSTTHTIERLALFDQFPYTRHMECGVLL 362 + + Q ILY+SCNP +L RD ++ + + + D FP+T H+E VL Sbjct: 388 LEVIKQLEQHQCDQILYVSCNPSALARDGAELIRQGYKASKFCVMDMFPHTSHVESLVLF 447 Query: 363 VR 364 + Sbjct: 448 EK 449 >gi|315655450|ref|ZP_07908350.1| conserved hypothetical protein [Mobiluncus curtisii ATCC 51333] gi|315490390|gb|EFU80015.1| conserved hypothetical protein [Mobiluncus curtisii ATCC 51333] Length = 413 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 62/205 (30%), Positives = 99/205 (48%), Gaps = 16/205 (7%) Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSL 225 V E ++V RT YR SF Q + + +L A ++G + ELY G+G FSL Sbjct: 216 VRETVSVGERTFTYRIFAGSFWQTDRRAPATLAAALLGAIGEVEGFEAWELYSGSGLFSL 275 Query: 226 VLARHFD---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282 LA+ R+ VE P+ ++A YN+A + V++ R + + + R + Sbjct: 276 FLAQAVGAKGRLTTVEGDGPATKSAAYNLAKAGFDQVEVRR---GDVSPQLLRSLPMGEM 332 Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA-YPHILYI-SCNPDSLCRDLSIL-STTH 339 + + DPPRSGL A + A +P ++ + SC+P S RDL + + Sbjct: 333 VS------QGTLVVADPPRSGLGKAVARAICAQHPDLVALFSCDPVSCARDLETMRQLGY 386 Query: 340 TIERLALFDQFPYTRHMECGVLLVR 364 ++ +FD FPYT H+EC L+ R Sbjct: 387 RVKTWRVFDLFPYTSHVECVCLMTR 411 >gi|14521350|ref|NP_126826.1| putative RNA methyltransferase [Pyrococcus abyssi GE5] gi|50401700|sp|Q9UZK1|Y1145_PYRAB RecName: Full=Uncharacterized RNA methyltransferase PYRAB11450 gi|5458568|emb|CAB50056.1| RNA methyltransferase, putative [Pyrococcus abyssi GE5] Length = 410 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 68/236 (28%), Positives = 106/236 (44%), Gaps = 35/236 (14%) Query: 144 ARKYQIQLIGRANKTKICLDRDYVDERLTVA----GRTLIYRQIE--------NSFTQPN 191 R+ + G A+ L RD D+ + G I IE ++F Q N Sbjct: 196 GREELTEAFGFADSVYWSLKRDKRDDPKGIPTLIKGNEFIRESIEGLVYLIHPSTFFQTN 255 Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251 + +L+ V + +G + +L+LY G G FSL LA+ V VE+ + SV A+ + Sbjct: 256 SYALPILLKAVESFAEGSK--VLDLYSGVGTFSLYLAKKGFEVTGVEVNEESVRVAKKSA 313 Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311 N ++ I R +D + Y +T+ VDPPR GL D + + Sbjct: 314 EVNSLDVSFIP-----------------GRAEDAKLKGY--ETLIVDPPRKGLKDFSKRI 354 Query: 312 VQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 + P +++Y+SCNP D + LS + IE L D FP+T H+E V L R+ Sbjct: 355 AKEGPENLIYVSCNPSKFVLDYRNYLSKAYKIEDAVLIDMFPHTPHVEAVVKLRRR 410 >gi|260905687|ref|ZP_05914009.1| 23S rRNA methyluridine methyltransferase [Brevibacterium linens BL2] Length = 401 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 57/193 (29%), Positives = 92/193 (47%), Gaps = 26/193 (13%) Query: 186 SFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNFSLVLARHFD-----RVLAVEI 239 SF Q N + + + V A I L +LYCG G F+L A RV VE+ Sbjct: 222 SFFQTNTDVAIGLYNQVAAWVDEIAPSSLWDLYCGVGGFALYCAGTTGQQSPRRVTGVEL 281 Query: 240 AKPSVEAARYNIA-----ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294 ++ ++E+A+ + + V+ + + EF +A E R Sbjct: 282 SEQAIESAKISAVELGFDSQSGATVEFIADDATEFAEANLASGE------------RPDC 329 Query: 295 IFVDPPRSGLDD--ATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPY 352 + V+PPR G+ +T HI+Y SCNP +L +DL + + +T+ER +FD FP+ Sbjct: 330 VIVNPPRRGIGARLSTALEDSGVEHIVYSSCNPLTLAKDLDQMPS-YTVERARVFDMFPH 388 Query: 353 TRHMECGVLLVRK 365 T+H+E V+L R+ Sbjct: 389 TKHLEVAVVLQRR 401 >gi|195440654|ref|XP_002068155.1| GK12558 [Drosophila willistoni] gi|194164240|gb|EDW79141.1| GK12558 [Drosophila willistoni] Length = 612 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 52/185 (28%), Positives = 89/185 (48%), Gaps = 16/185 (8%) Query: 193 GINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIA 252 G NV + + A +L++ CG G +L A+H +VL VEI +++ A +N Sbjct: 410 GANVLYQKAIDLAAPTKDSTVLDICCGTGTIALSFAKHCKKVLGVEIVPDAIKDAEFNAE 469 Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312 AN + N K ++ +F ++M E L D ++ VDPPR+GL + ++ + Sbjct: 470 ANGIKNCKFFTGNADDFIKSMVHE----ALYDQEVGKKGDLIAIVDPPRAGLHNRSIAAI 525 Query: 313 Q---AYPHILYISCNPDSLCRDLSILSTTHTIE--------RLAL-FDQFPYTRHMECGV 360 + A ++Y+SCNP R+ L+ + + + AL D FP+T H E + Sbjct: 526 RSASAITRLVYVSCNPHIAKRNFIELARPESKQYKGEPFYPKTALAVDMFPHTSHTELVI 585 Query: 361 LLVRK 365 L R+ Sbjct: 586 LFERE 590 >gi|283769200|ref|ZP_06342104.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bulleidia extructa W1219] gi|283104176|gb|EFC05555.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bulleidia extructa W1219] Length = 442 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 46/155 (29%), Positives = 80/155 (51%), Gaps = 15/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++LYCG G ++ A+ +V+ +EI +++ A+ N N +N++ M +++ + Sbjct: 298 VVDLYCGTGTIGILAAKIAKKVIGIEIVPEAIDNAKANAQLNCQDNLEFWCMDAQDGAKK 357 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330 + +E ID+ + VDPPR G T+ +Q ++YISC+P +L R Sbjct: 358 IVETKE-----SIDV-------VIVDPPRKGCSLETLQAIQKMEPKKMVYISCDPSTLAR 405 Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364 DL L S +E + D FP T H+EC L+ R Sbjct: 406 DLEFLQSMGFKVETVQPVDLFPQTVHVECIALIQR 440 >gi|222151850|ref|YP_002561010.1| tRNA (uracil-5-)-methyltransferase family protein [Macrococcus caseolyticus JCSC5402] gi|222120979|dbj|BAH18314.1| tRNA (uracil-5-)-methyltransferase family protein [Macrococcus caseolyticus JCSC5402] Length = 459 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 60/210 (28%), Positives = 96/210 (45%), Gaps = 25/210 (11%) Query: 168 DERLTVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWV--LAATKGIQGDLLELY 217 DE + +AG I Q+++ SF Q N V + V AA G Q ++++ + Sbjct: 258 DETIVIAGEETIREQLQDHIYDLSAESFFQLNPRQTVVLYNEVRDAAALTG-QENVVDAF 316 Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277 CG G + LA + V ++ + + A YN N +N K + E Sbjct: 317 CGTGTIGIWLADNAGEVRGMDTNEDGIVNAIYNATLNGADNCKFEVGDASE--------- 367 Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYPH-ILYISCNPDSLCRDLSIL 335 +L + + I VDPPR+GL +AT+ ++ + P +Y SCNP +L +DL+ L Sbjct: 368 ---KLNEWIEEGFYPDVITVDPPRTGLSEATIKLINEIKPKTFVYTSCNPSTLAKDLAHL 424 Query: 336 STTHTIERLALFDQFPYTRHMECGVLLVRK 365 + +E + D FP T +E V L RK Sbjct: 425 TKAFQVEYIQPVDMFPQTAQVEAVVKLTRK 454 >gi|224007631|ref|XP_002292775.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220971637|gb|EED89971.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 387 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 54/198 (27%), Positives = 90/198 (45%), Gaps = 20/198 (10%) Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVL--AATKGIQGD----LLELYCGNGNFSLVLAR 229 + L +R +F Q N + M++ V+ A K G+ L++ YCG+G F+L + Sbjct: 199 KDLTFRFQAGNFFQNNPFMLPKMVDLVVDAATIKSSSGEAMTHLIDCYCGSGLFALGCSS 258 Query: 230 HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHS 289 FD + +E+ +V+ AR N N + N V S++ L + Sbjct: 259 SFDVCVGIEVNDKAVQEARANAELNGIKNCDFVSASAEAIF-----------LSKDPVKG 307 Query: 290 YRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSIL-STTHTIERLAL 346 + VDPPR G + + + Y ++Y+SC+P + RD L + + I + Sbjct: 308 KESTVVVVDPPRKGCSEEFLEQLDEYKPQRVVYMSCDPATQARDAKFLVAHGYDIVSVQP 367 Query: 347 FDQFPYTRHMECGVLLVR 364 FD FP TRH+EC + R Sbjct: 368 FDLFPQTRHIECLAIFER 385 >gi|118580724|ref|YP_901974.1| RNA methyltransferase [Pelobacter propionicus DSM 2379] gi|118503434|gb|ABK99916.1| 23S rRNA m(5)U-1939 methyltransferase [Pelobacter propionicus DSM 2379] Length = 493 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 48/148 (32%), Positives = 77/148 (52%), Gaps = 15/148 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +L+LYCG G +L LAR RV+ VE+ + +VE AR N N ++N E + Sbjct: 342 VLDLYCGIGGIALTLARRARRVIGVEVVEAAVEDARRNARMNGISNCVFQAGDVAEQLEE 401 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCR 330 + + E +D+ + ++PPR G D+ + V A +LY+SC+P +L R Sbjct: 402 LAEDGE-----GVDV-------VVLNPPRKGCDEQVLRQVAALGPRTVLYVSCSPQTLAR 449 Query: 331 DLSIL-STTHTIERLALFDQFPYTRHME 357 DL++L S + + D FP+T H+E Sbjct: 450 DLNLLKSLGYVCVEVQPVDMFPHTMHVE 477 >gi|330443892|ref|YP_004376878.1| tRNA (Uracil-5-)-methyltransferase [Chlamydophila pecorum E58] gi|328807002|gb|AEB41175.1| tRNA (Uracil-5-)-methyltransferase [Chlamydophila pecorum E58] Length = 396 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 60/206 (29%), Positives = 100/206 (48%), Gaps = 20/206 (9%) Query: 166 YVDERLTVA--GRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNG 221 Y+ + LT+ G + + SF QP +++ V QG LL+LYCG G Sbjct: 200 YIQQTLTLPSDGSSATFNIRPKSFFQPQTLQAARIIDTVKEFINP-QGTEILLDLYCGVG 258 Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281 ++LA + +V+ VE ++ +AR NI NH N V + E T+ ++ + Sbjct: 259 TLGIMLAPYVQKVIGVENVPEAILSARENILINHQENRMEVFL---EDTKTFCKKLPYTC 315 Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRD-LSILSTT 338 DI I VDPPR GL + + + P ++YISCNP + ++ ++ Sbjct: 316 PPDI---------IIVDPPRCGLQNKALKHILKIGAPKLVYISCNPRTQFQECFQLIHAG 366 Query: 339 HTIERLALFDQFPYTRHMECGVLLVR 364 ++I+ + DQFP++ H+E +LL R Sbjct: 367 YSIKAMQPIDQFPHSPHLENILLLER 392 >gi|227509977|ref|ZP_03940026.1| TrmA family tRNA (uracil-5-)-methyltransferase [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227190583|gb|EEI70650.1| TrmA family tRNA (uracil-5-)-methyltransferase [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 456 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 52/179 (29%), Positives = 86/179 (48%), Gaps = 17/179 (9%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 NSF Q N + + + + + D+ ++ YCG G SL LA+ +V VEI + Sbjct: 282 NSFYQVNPIQTEKLYKLAIQKAQLNKDDIVIDAYCGIGTISLSLAKVVKKVYGVEIVPEA 341 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 +E A+ N N ++N K+V ++E +L + I VDPPR G Sbjct: 342 IEDAKRNAHINKISNCKVVVAKAEE------------QLGKWQKAGLKPDVIVVDPPRKG 389 Query: 304 LDDATV-GMVQAYPH-ILYISCNPDSLCRDLSILST--THTIERLALFDQFPYTRHMEC 358 LD++ + + + P ++Y+SCNP +L RD + + + + DQFP T H+E Sbjct: 390 LDESLIESVAEMSPQRLIYVSCNPATLARDAKLFAEHGYQINQPIQPVDQFPQTVHVES 448 >gi|288576123|ref|ZP_05978225.2| 23S rRNA (uracil-5-)-methyltransferase RumA [Neisseria mucosa ATCC 25996] gi|288566282|gb|EFC87842.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Neisseria mucosa ATCC 25996] Length = 458 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 88/361 (24%), Positives = 154/361 (42%), Gaps = 41/361 (11%) Query: 11 EQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD-QQTKE 69 E+QL E++ ++R + L P HYR RA I D I F +++ E Sbjct: 114 EEQL-ERIGKIRPEQI------LPAIYGTPWHYRDRARLSISKDAGGRLKIGFKAKKSHE 166 Query: 70 RMRIDYFMPGSLLINALMIEMMATIR--LEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLL 127 + +D M ++ A + E + I+ L+ L+ L I++ S+ + + Sbjct: 167 VIDVDSCM----VLPAHISEKLPKIKQMLQSLIDLDLLFIEFFNSEKLTVLNICSRKKPP 222 Query: 128 DDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE--- 184 R+ L K Q Q+ +A + + + + + G L ++E Sbjct: 223 SQKLRQLEKWFDTILGCEKKQWQIWLQAGRQEA---QPFYPKDCQPLGYALPEFEVEMPY 279 Query: 185 --NSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIA 240 FTQ NAG+N M+ L IQ + + +L+CG GNFS+ +A+ V+ +E Sbjct: 280 KPGDFTQINAGLNGVMVGRALKLLD-IQKNERIADLFCGLGNFSIPMAKSGAEVVGIEGE 338 Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY-RFKTIFVDP 299 VE AR N +AN F + E + + + S+ +F + +DP Sbjct: 339 GSLVERARNNASANGC------------FDRVSFSEADLFETDETVLASWGQFDKMLLDP 386 Query: 300 PRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHM 356 PRSG + Y I+Y+SCNP + RD +L + + ++ + + + F T H+ Sbjct: 387 PRSGAYAVVKSLHAPYLPVKIVYVSCNPATFARDAEVLVNKGYRLKFVGVMNMFAQTSHV 446 Query: 357 E 357 E Sbjct: 447 E 447 >gi|120598069|ref|YP_962643.1| 23S rRNA 5-methyluridine methyltransferase [Shewanella sp. W3-18-1] gi|143582575|sp|A1RHE4|RUMA_SHESW RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|120558162|gb|ABM24089.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Shewanella sp. W3-18-1] Length = 450 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 55/186 (29%), Positives = 89/186 (47%), Gaps = 26/186 (13%) Query: 185 NSFTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240 +F Q N+ IN M ++W+ A +L+L+CG GNFSL LA+ V+ VE Sbjct: 279 GNFVQVNSQINKAMVAQAMDWLAPAP---DERILDLFCGMGNFSLPLAKMGADVIGVEGV 335 Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY--RFKTIFVD 298 V AR N AN+++ + + D+ + + + + +D Sbjct: 336 AEMVSQARVNAKANNLDKLTFYHG---------------DLSADLSLEPWMGKIDKLLLD 380 Query: 299 PPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDLSI-LSTTHTIERLALFDQFPYTRHM 356 P R+G ++ + + P +LY+SCNP SL RD ++ L + ++RL L D FP T H+ Sbjct: 381 PARAGAFESLQWLKKMKPRKVLYVSCNPASLARDSAVLLERGYRLQRLGLIDMFPQTHHI 440 Query: 357 ECGVLL 362 E L Sbjct: 441 EAMALF 446 >gi|302873306|ref|YP_003841939.1| RNA methyltransferase, TrmA family [Clostridium cellulovorans 743B] gi|302576163|gb|ADL50175.1| RNA methyltransferase, TrmA family [Clostridium cellulovorans 743B] Length = 472 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 49/165 (29%), Positives = 80/165 (48%), Gaps = 21/165 (12%) Query: 208 GIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265 G+ G+ + + YCG G SL L++ +V VEI + ++E A N N ++N + Sbjct: 320 GLTGNEVVFDAYCGTGTISLFLSKKASKVYGVEIIEAAIENANINAKENKIDNAEFFVGK 379 Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD----DATVGMVQAYPHILYI 321 ++ + + + + VDPPR G + DA V M + I+Y+ Sbjct: 380 CEDVIPKLIAD------------GVKADVVVVDPPRKGCEKSLLDALVSM--SPERIVYV 425 Query: 322 SCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRK 365 SC+P +L RDL IL + ++ + D FP T H+E VL+ RK Sbjct: 426 SCDPGTLARDLRILCDMGYDLKEVQPVDMFPETGHVESVVLITRK 470 >gi|325264644|ref|ZP_08131374.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium sp. D5] gi|324030306|gb|EGB91591.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium sp. D5] Length = 567 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 59/185 (31%), Positives = 90/185 (48%), Gaps = 10/185 (5%) Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 SF Q N + L + G++G+ + +LYCG G SL LA+ +V VEI + Sbjct: 283 SFYQVNP-VQTEKLYGLALEYAGLKGNETVWDLYCGIGTISLFLAQKAKQVYGVEIVPQA 341 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 +E AR N N + N + +++ RE + H+ I VDPPR G Sbjct: 342 IEDARNNAEINGIGNAEFYTGRAEDVLPEYYREYAMEHPGE-KAHA---DVIVVDPPRKG 397 Query: 304 LDDATVG-MVQAYP-HILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGV 360 +++ + M + P I+Y+SC+ +L RDL LS + + R+ DQFP H+E V Sbjct: 398 CEESLLKTMAEMEPDRIVYVSCDSATLARDLKYLSGEGYELVRVRAVDQFPMGVHVETVV 457 Query: 361 LLVRK 365 LL K Sbjct: 458 LLSHK 462 >gi|313892756|ref|ZP_07826337.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Veillonella sp. oral taxon 158 str. F0412] gi|313442687|gb|EFR61098.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Veillonella sp. oral taxon 158 str. F0412] Length = 494 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 94/391 (24%), Positives = 161/391 (41%), Gaps = 64/391 (16%) Query: 10 YEQQLAEKVDRLRQMM--LAFQVPNL---QIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 YE QL+ K +++ ++ + Q P+L + EP YR + + + Sbjct: 131 YEGQLSLKTQKVKDVIERIGHQNPDLVKPALGPKEPWAYRNKMQMPVG------------ 178 Query: 65 QQTKERMRIDYFMPGSLLI----NALMIEMMATIRLEPLLR-AKLFQIDYLTSQSDQAIV 119 TK +++ ++ GS I N + + I + + AK F I+ + I+ Sbjct: 179 -GTKGDIQMGFYAMGSHDIVQGTNCPIQDEGNNIIAQACYQIAKEFDIEPYDEHTGNGIL 237 Query: 120 TLIYHRLLDDAWRECAIRLRDAL-HARKYQIQLIGR------------ANKTKICLDRD- 165 + R+ W + D L H K+ +L R +T + L Sbjct: 238 RHVIGRIGQSGWMIILVTATDHLPHQEKWVEKLTERIPQVETIVHNVNGKRTNVILGPKN 297 Query: 166 ---YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGN 220 Y D +T + L + +SF Q N + + LA ++GD +++ YCG Sbjct: 298 NILYGDGTITDHIKDLRFTLSPHSFFQVNPEQTTVLYDQALAYAD-LKGDETVIDAYCGT 356 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK-IVRMSSKEFTQAMRREREF 279 G SL LA V+ +EI +P++ AR N N +N + IV ++ E + + Sbjct: 357 GTISLFLAHKAKHVIGIEIVEPAIINARENAKCNGYDNTEFIVADAAVEMPKLYKA---- 412 Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDD----ATVGMVQAYPHILYISCNPDSLCRDLSIL 335 R I DP R+G + + GM I+Y+SCNP ++ RD+ IL Sbjct: 413 ---------GVRADVIVFDPIRAGCKEEVLTSAAGMEPK--RIVYVSCNPATMARDIEIL 461 Query: 336 S-TTHTIERLALFDQFPYTRHMECGVLLVRK 365 + + ++ + D FP T H+E LL RK Sbjct: 462 THYGYELKEVQPVDMFPMTAHVETVCLLSRK 492 >gi|313678801|ref|YP_004056541.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Mycoplasma bovis PG45] gi|312950249|gb|ADR24844.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Mycoplasma bovis PG45] Length = 440 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 50/153 (32%), Positives = 76/153 (49%), Gaps = 18/153 (11%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G SL LA+ +V +EI +V A+ N +N +NNV + Sbjct: 296 VIDAYCGIGTISLFLAQKSKKVYGLEIVNEAVINAKENAISNDINNVDFIAG-------- 347 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330 + +K ID + + VDPPRSGL D + + + I YISCNP ++CR Sbjct: 348 -------DVIKSIDKIKEKVDILVVDPPRSGLSDEFLSKILSIRPKEIGYISCNPHTMCR 400 Query: 331 DLSILSTT-HTIERLALFDQFPYTRHMECGVLL 362 D++ LS + + I L D F T H+E +L Sbjct: 401 DINTLSKSGYEISYLRPCDMFCQTYHIEVVAVL 433 >gi|311067148|ref|YP_003972071.1| putative RNA methyltransferase [Bacillus atrophaeus 1942] gi|310867665|gb|ADP31140.1| putative RNA methyltransferase [Bacillus atrophaeus 1942] Length = 460 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 48/158 (30%), Positives = 75/158 (47%), Gaps = 15/158 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G SL LA+ +V VEI ++E A+ N N + N + ++ Sbjct: 315 VIDAYCGIGTISLFLAKQAKKVYGVEIVPEAIEDAKRNAELNGITNAEFAVGEAETVIPK 374 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330 E T+ VDPPR G D+A + +V+ P ++Y+SCNP +L R Sbjct: 375 WYEE------------GITADTLVVDPPRKGCDEALLRTIVEMKPKRVVYVSCNPGTLAR 422 Query: 331 DLSILS-TTHTIERLALFDQFPYTRHMECGVLLVRKPS 367 DL +L + + D FP+T H+E V L + S Sbjct: 423 DLRVLEDGGYATLEVQPVDMFPHTNHVEVTVKLTLRGS 460 >gi|315924682|ref|ZP_07920899.1| 23S rRNA (uracil-5-)-methyltransferase [Pseudoramibacter alactolyticus ATCC 23263] gi|315621581|gb|EFV01545.1| 23S rRNA (uracil-5-)-methyltransferase [Pseudoramibacter alactolyticus ATCC 23263] Length = 458 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 84/338 (24%), Positives = 141/338 (41%), Gaps = 30/338 (8%) Query: 41 IHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGS---LLINALMIEMMATIRLE 97 +HYR +A+F I +G Y Q ++ P L++N + + I E Sbjct: 134 VHYRNKAQFKISEEGIGFYAKGSHQVIPIAHCLNQMTPNDDLILILNQWVKDSQIPIYRE 193 Query: 98 PLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHA-RKYQIQL-IGRA 155 L I ++ +VTLI L A RL+++L + I + R Sbjct: 194 DSGTGNLRGILVRANRRGDIMVTLIAKTLSGVNTERLARRLQESLSELVSFSININPNRG 253 Query: 156 NK-----TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGI 209 N+ T++ + E T+ GR ++ SF Q N + V+ A Sbjct: 254 NRVLGEETRVIFGAPTISE--TLCGRE--FQISPASFFQVNTEQAEKLYRQVIRYANLTG 309 Query: 210 QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269 Q + +LYCG G + +A +V +E ++ A+ N N+++N++ S++ Sbjct: 310 QESVFDLYCGTGTIGICMADRARKVTGIEAVPEAIADAKENARRNNIDNIQFFCGRSEKI 369 Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDS 327 RL D + VDPPR G + + A P I+Y+SCNP + Sbjct: 370 MS--------ERLAAGDAAD----VVVVDPPRKGCARLLLETIVASGVPKIVYVSCNPST 417 Query: 328 LCRDLSILS-TTHTIERLALFDQFPYTRHMECGVLLVR 364 L RD L+ + +E + FD FP T H+E VL+++ Sbjct: 418 LARDCRCLADAGYRLEEVTPFDLFPGTGHVETVVLMLK 455 >gi|291562412|emb|CBL41228.1| 23S rRNA (uracil-5-)-methyltransferase RumA [butyrate-producing bacterium SS3/4] Length = 607 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 93/380 (24%), Positives = 153/380 (40%), Gaps = 46/380 (12%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69 YE+QL K + +++ F I +P HYR + H D HI+ KE Sbjct: 155 YEKQLEHKKKEVSELLRPFCRVEEIIGMDDPFHYRNKV--HAVMARDRKGHII-SGVYKE 211 Query: 70 RMRIDYFMPGSLLINALMIEMMATIR-LEPLLRAKLFQIDY-----------LTSQSDQA 117 + L+ N E++ TIR L P + K+F D + + Sbjct: 212 GTHTVLPVETCLIENKKADEIIGTIRELLPSFKMKVFDEDTGYGFLRHVLVRTAHATGEI 271 Query: 118 IVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRT 177 +V LI + + LR +Q + + + + ++++V + G Sbjct: 272 MVVLITASPVFPSKNNFVKALRKIHPEITTVVQNVNGRDTSMVLGEKEHV-----LYGPG 326 Query: 178 LI--------YRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVL 227 I +R SF Q N + L + G+ G +++ YCG G +V Sbjct: 327 FIVDVLCGKKFRISSKSFYQINP-VQTEKLYNLAIEAAGLTGKETVVDAYCGIGTIGIVA 385 Query: 228 ARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDI 287 A V+ VE+ K +V A N AN N++ + +F M + N D+ Sbjct: 386 ASAAKEVIGVELNKDAVRDAVTNAKANGEKNIRFYNNDAGKFMVQMASQ---NAHADV-- 440 Query: 288 HSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTT-HTIERL 344 +F+DPPRSG + + V ++Y+SCNP++L RDL+ + E+ Sbjct: 441 -------VFMDPPRSGSTEEFMDAVAILNPDRVVYVSCNPETLARDLAYFKKKGYRAEKA 493 Query: 345 ALFDQFPYTRHMECGVLLVR 364 DQFP T H+E VLL + Sbjct: 494 WAVDQFPATSHVETVVLLSK 513 >gi|307688528|ref|ZP_07630974.1| RNA methyltransferase, TrmA family protein [Clostridium cellulovorans 743B] Length = 462 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 49/165 (29%), Positives = 80/165 (48%), Gaps = 21/165 (12%) Query: 208 GIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265 G+ G+ + + YCG G SL L++ +V VEI + ++E A N N ++N + Sbjct: 310 GLTGNEVVFDAYCGTGTISLFLSKKASKVYGVEIIEAAIENANINAKENKIDNAEFFVGK 369 Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD----DATVGMVQAYPHILYI 321 ++ + + + + VDPPR G + DA V M + I+Y+ Sbjct: 370 CEDVIPKLIAD------------GVKADVVVVDPPRKGCEKSLLDALVSM--SPERIVYV 415 Query: 322 SCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRK 365 SC+P +L RDL IL + ++ + D FP T H+E VL+ RK Sbjct: 416 SCDPGTLARDLRILCDMGYDLKEVQPVDMFPETGHVESVVLITRK 460 >gi|307256341|ref|ZP_07538124.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306865167|gb|EFM97067.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Actinobacillus pleuropneumoniae serovar 10 str. D13039] Length = 442 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 55/185 (29%), Positives = 88/185 (47%), Gaps = 23/185 (12%) Query: 187 FTQPNAGINVHM----LEWV-LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241 F Q N +N M LEW+ L+A Q +L+L+CG GNF+L +A+ V+ VE + Sbjct: 274 FIQVNGDLNEKMVDKALEWLDLSA----QDRVLDLFCGMGNFTLPIAKQAGFVVGVEGVE 329 Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301 P V A+ N + + NV + + E D S F + +DP R Sbjct: 330 PMVAQAKQNRDTSGLKNVAFYQTNLDE------------PFADKPWASEPFNKVLLDPAR 377 Query: 302 SGLDDATVGMVQAYPH-ILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHMECG 359 +G + P I+Y+SCNP +L RD ++ + +++ A+ D FP+T H+E Sbjct: 378 NGAFFCLDHLAALNPETIVYVSCNPATLVRDAEKLIQAGYKLQKAAMIDMFPHTGHLESI 437 Query: 360 VLLVR 364 L + Sbjct: 438 SLFTK 442 >gi|303252554|ref|ZP_07338717.1| 23S rRNA 5-methyluridine methyltransferase [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307247305|ref|ZP_07529353.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|302648522|gb|EFL78715.1| 23S rRNA 5-methyluridine methyltransferase [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|306856149|gb|EFM88304.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Actinobacillus pleuropneumoniae serovar 2 str. S1536] Length = 442 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 55/185 (29%), Positives = 88/185 (47%), Gaps = 23/185 (12%) Query: 187 FTQPNAGINVHM----LEWV-LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241 F Q N +N M LEW+ L+A Q +L+L+CG GNF+L +A+ V+ VE + Sbjct: 274 FIQVNGDLNEKMVDKALEWLDLSA----QDRVLDLFCGMGNFTLPIAKQAGFVVGVEGVE 329 Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301 P V A+ N + + NV + + E D S F + +DP R Sbjct: 330 PMVAQAKQNRDTSGLKNVAFYQTNLDE------------PFADKPWASEPFNKVLLDPAR 377 Query: 302 SGLDDATVGMVQAYPH-ILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHMECG 359 +G + P I+Y+SCNP +L RD ++ + +++ A+ D FP+T H+E Sbjct: 378 NGAFFCLDHLAALNPETIVYVSCNPATLVRDAEKLIQAGYKLQKAAMIDMFPHTGHLESI 437 Query: 360 VLLVR 364 L + Sbjct: 438 SLFTK 442 >gi|15924887|ref|NP_372421.1| RNA methyltransferase-like protein [Staphylococcus aureus subsp. aureus Mu50] gi|15927471|ref|NP_375004.1| hypothetical protein SA1713 [Staphylococcus aureus subsp. aureus N315] gi|148268369|ref|YP_001247312.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus JH9] gi|150394431|ref|YP_001317106.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus JH1] gi|156980213|ref|YP_001442472.1| RNA methyltransferase-like protein [Staphylococcus aureus subsp. aureus Mu3] gi|253734995|ref|ZP_04869160.1| TrmA family RNA methyltransferase [Staphylococcus aureus subsp. aureus TCH130] gi|255006684|ref|ZP_05145285.2| RNA methyltransferase-like protein [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257793749|ref|ZP_05642728.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus A9781] gi|258408891|ref|ZP_05681173.1| RNA methyltransferase [Staphylococcus aureus A9763] gi|258421005|ref|ZP_05683936.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus A9719] gi|258430023|ref|ZP_05688393.1| RNA methyltransferase [Staphylococcus aureus A9299] gi|258443459|ref|ZP_05691801.1| RNA methyltransferase [Staphylococcus aureus A8115] gi|258445317|ref|ZP_05693508.1| RNA methyltransferase [Staphylococcus aureus A6300] gi|258447881|ref|ZP_05696015.1| RNA methyltransferase [Staphylococcus aureus A6224] gi|258453314|ref|ZP_05701299.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus A5937] gi|269203550|ref|YP_003282819.1| rRNA methyltransferase RumA [Staphylococcus aureus subsp. aureus ED98] gi|282894564|ref|ZP_06302792.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus A8117] gi|282928070|ref|ZP_06335677.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus A10102] gi|295407277|ref|ZP_06817076.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus A8819] gi|296276906|ref|ZP_06859413.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus MR1] gi|297246197|ref|ZP_06930048.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus A8796] gi|51316731|sp|Q7A4Q9|Y1713_STAAN RecName: Full=Uncharacterized RNA methyltransferase SA1713 gi|51316908|sp|Q99SY9|Y1897_STAAM RecName: Full=Uncharacterized RNA methyltransferase SAV1897 gi|13701690|dbj|BAB42983.1| SA1713 [Staphylococcus aureus subsp. aureus N315] gi|14247669|dbj|BAB58059.1| RNA methyltransferase homolog [Staphylococcus aureus subsp. aureus Mu50] gi|147741438|gb|ABQ49736.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus subsp. aureus JH9] gi|149946883|gb|ABR52819.1| RNA methyltransferase, TrmA family [Staphylococcus aureus subsp. aureus JH1] gi|156722348|dbj|BAF78765.1| RNA methyltransferase homolog [Staphylococcus aureus subsp. aureus Mu3] gi|253727177|gb|EES95906.1| TrmA family RNA methyltransferase [Staphylococcus aureus subsp. aureus TCH130] gi|257787721|gb|EEV26061.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus A9781] gi|257840338|gb|EEV64800.1| RNA methyltransferase [Staphylococcus aureus A9763] gi|257842953|gb|EEV67371.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus A9719] gi|257849617|gb|EEV73585.1| RNA methyltransferase [Staphylococcus aureus A9299] gi|257851344|gb|EEV75284.1| RNA methyltransferase [Staphylococcus aureus A8115] gi|257855835|gb|EEV78759.1| RNA methyltransferase [Staphylococcus aureus A6300] gi|257858813|gb|EEV81682.1| RNA methyltransferase [Staphylococcus aureus A6224] gi|257864522|gb|EEV87265.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus A5937] gi|262075840|gb|ACY11813.1| rRNA methyltransferase RumA [Staphylococcus aureus subsp. aureus ED98] gi|282590134|gb|EFB95215.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus A10102] gi|282763051|gb|EFC03183.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus A8117] gi|285817577|gb|ADC38064.1| RNA methyltransferase, TrmA family [Staphylococcus aureus 04-02981] gi|294967852|gb|EFG43882.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus A8819] gi|297176904|gb|EFH36161.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus A8796] gi|312830269|emb|CBX35111.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315129294|gb|EFT85288.1| hypothetical protein CGSSa03_08530 [Staphylococcus aureus subsp. aureus CGS03] gi|329724825|gb|EGG61329.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus subsp. aureus 21172] Length = 453 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 46/152 (30%), Positives = 70/152 (46%), Gaps = 14/152 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +L+ YCG G L +A H V VE+ S+E A+ N N NN V ++E Sbjct: 311 VLDTYCGIGTIGLYMAPHAKHVYGVEVVPSSIEDAQQNATINQCNNTTFVCGKAEEVILQ 370 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330 + + + + VDPPR G D+ + ++ P I+YISCNP + R Sbjct: 371 WKAQ------------GIKPDVVMVDPPRKGCDETFIQTLLTLEPKRIVYISCNPATQQR 418 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLL 362 D +L+ + +E + D FP T H+E L Sbjct: 419 DALLLAEKYQLEEVTPVDMFPQTTHVETVALF 450 >gi|239825990|ref|YP_002948614.1| RNA methyltransferase, TrmA family [Geobacillus sp. WCH70] gi|239806283|gb|ACS23348.1| RNA methyltransferase, TrmA family [Geobacillus sp. WCH70] Length = 460 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 47/164 (28%), Positives = 80/164 (48%), Gaps = 15/164 (9%) Query: 204 AATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVR 263 AA G + +++ YCG G L LA+ + ++ ++E A+ N + N V Sbjct: 308 AALTGTE-KVVDAYCGVGTIGLWLAKDAGEIRGMDTIPEAIEDAKKNAKKHGFTNAMYVT 366 Query: 264 MSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYI 321 ++ +E ++ I VDPPR+G D + +++ P ++Y+ Sbjct: 367 GKAEALLPKWVKE------------GWKPDVIVVDPPRTGCDQQLLQTILRVKPKTVVYV 414 Query: 322 SCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 SCNP SL RD+ +LS +T++ + D FP+T H+EC LV K Sbjct: 415 SCNPSSLARDVDVLSERYTVDYIQPVDMFPHTAHVECVSRLVLK 458 >gi|317470873|ref|ZP_07930254.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Anaerostipes sp. 3_2_56FAA] gi|316901700|gb|EFV23633.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Anaerostipes sp. 3_2_56FAA] Length = 452 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 64/211 (30%), Positives = 93/211 (44%), Gaps = 29/211 (13%) Query: 168 DERLTVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGD--LLELY 217 D+ T+ G Y +I SF Q N+ + +L G D + +LY Sbjct: 257 DQMETIYGEDFFYEEILGLKFKISPFSFFQTNS-LGAEVLYETAREYVGETKDKVIFDLY 315 Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277 G G + +LA +V+ VEI + +VEAAR N N + N + + Sbjct: 316 SGTGTIAQMLAPVAKKVVGVEIVEEAVEAARENAGFNGLENCEFIAG------------- 362 Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSIL 335 + LK ID + I +DPPR G+ + + + ++YISC P SL RDL I Sbjct: 363 --DVLKVIDELEDKPDFIVLDPPRDGIHPKAIQKIIDFGVEKMVYISCKPTSLARDLEIF 420 Query: 336 -STTHTIERLALFDQFPYTRHMECGVLLVRK 365 + +ER D FP T H+E VLL RK Sbjct: 421 REAGYEVERGECVDMFPSTVHVETVVLLERK 451 >gi|167037122|ref|YP_001664700.1| RNA methyltransferase [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320115540|ref|YP_004185699.1| TrmA family RNA methyltransferase [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166855956|gb|ABY94364.1| RNA methyltransferase, TrmA family [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319928631|gb|ADV79316.1| RNA methyltransferase, TrmA family [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 450 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 62/237 (26%), Positives = 110/237 (46%), Gaps = 31/237 (13%) Query: 137 RLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINV 196 RL LH + K + +DY+ E L L ++ SF Q N+ Sbjct: 237 RLVGVLHTQNDSWSDAVVCEKLNVLYGKDYLIEELL----GLKFKISAFSFFQTNS---- 288 Query: 197 HMLEWVLAATKGIQGDL-----LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251 + E + + GD+ +LY G G +++A +V+ +E+ + +V +AR N Sbjct: 289 YGAEKLYETVREFAGDVSDKIVFDLYSGTGTIGIIMAPMAKKVIGIELVEEAVMSARENA 348 Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311 N + N + + + +Q ++ +E + + VDPPRSG++ + Sbjct: 349 KLNGLENCTFI---AGDVSQKLKEIKE------------KPDVVIVDPPRSGINPKALED 393 Query: 312 VQAY--PHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVRK 365 + + I+Y+SCNP+SL RDL LS + ++++ D FP+T H+E VL+ RK Sbjct: 394 IVKFNAEKIVYVSCNPESLVRDLKTLSEDVYKVKKVKCVDMFPHTYHVETVVLIERK 450 >gi|167752279|ref|ZP_02424406.1| hypothetical protein ALIPUT_00523 [Alistipes putredinis DSM 17216] gi|167660520|gb|EDS04650.1| hypothetical protein ALIPUT_00523 [Alistipes putredinis DSM 17216] Length = 469 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 60/206 (29%), Positives = 99/206 (48%), Gaps = 20/206 (9%) Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAG--INVHMLEWVLAATKGIQGDLLELYCGNG 221 +D++ ER+ L ++ SF Q N+ ++ + AA G + L +LY G G Sbjct: 280 KDHIIERM----EGLQFKVGPKSFYQTNSAQAYELYKVARDFAALTGKE-ILYDLYTGTG 334 Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281 + A +V+ VE ++E AR N N + N K EF R Sbjct: 335 TIANFCAARCAKVVGVEYVPEAIEDARINSTLNGIGNTVFYAGDMKAVLSD-----EFIR 389 Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYPH-ILYISCNPDSLCRDLSILSTTH 339 + R I +DPPR+G+D+ + ++ +A P I+Y+SCNP + RDL+++ + Sbjct: 390 ------RNGRPDVIILDPPRAGVDEPVIDVILRAAPERIVYVSCNPATQARDLALMDGAY 443 Query: 340 TIERLALFDQFPYTRHMECGVLLVRK 365 +E + D FP+T H+E V LVR+ Sbjct: 444 RVEAVQPVDMFPHTHHVENVVKLVRR 469 >gi|157374425|ref|YP_001473025.1| 23S rRNA 5-methyluridine methyltransferase [Shewanella sediminis HAW-EB3] gi|226725393|sp|A8FSS4|RUMA_SHESH RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|157316799|gb|ABV35897.1| RNA methyltransferase, TrmA family [Shewanella sediminis HAW-EB3] Length = 442 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 54/184 (29%), Positives = 89/184 (48%), Gaps = 22/184 (11%) Query: 185 NSFTQPNAGINVHML----EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240 +F Q NA IN M+ +W+ +L+L+CG GNFSL LA+ V+ VE Sbjct: 272 GNFIQVNAAINESMVKQAVDWLSVKP---NERVLDLFCGVGNFSLPLAKSGAEVIGVEGV 328 Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300 V+ AR N A + ++NV + + + +E ++ + +DP Sbjct: 329 PEMVKQARENAADSGLDNVSFFHT---DLSADLSKETWLGKV----------DKLLLDPA 375 Query: 301 RSGLDDATVGMVQAYPH-ILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMEC 358 R+G ++ + + P I+Y+SC+P SL RD +L + +++L L D FP T H+E Sbjct: 376 RAGAFESLQWLKKMKPKAIVYVSCDPSSLARDSEPLLKHGYKLKKLGLIDMFPQTHHIEA 435 Query: 359 GVLL 362 L Sbjct: 436 MALF 439 >gi|157691537|ref|YP_001485999.1| tRNA (uracil-5-)-methyltransferase [Bacillus pumilus SAFR-032] gi|157680295|gb|ABV61439.1| tRNA (uracil-5-)-methyltransferase [Bacillus pumilus SAFR-032] Length = 461 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 45/155 (29%), Positives = 78/155 (50%), Gaps = 14/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G + L+ V +++ K S++ A+ N + + N V +++ + Sbjct: 319 VVDAYCGVGTIGMWLSDGAKEVRGMDVIKESIDDAKKNAKKHGMKNATYVTGTAEHWLPK 378 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYPH-ILYISCNPDSLCR 330 +E +R I VDPPR+G + + V Q P ++Y+SCNP +L + Sbjct: 379 WVKE------------GFRPDVIVVDPPRTGCERTFLDTVKQVKPKRLVYVSCNPSTLAK 426 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 DL +S + IE + D FP+T H+E V LV+K Sbjct: 427 DLEYISKDYKIEYMQPVDMFPHTSHVETVVSLVKK 461 >gi|227500125|ref|ZP_03930196.1| TrmA family RNA methyltransferase [Anaerococcus tetradius ATCC 35098] gi|227217840|gb|EEI83137.1| TrmA family RNA methyltransferase [Anaerococcus tetradius ATCC 35098] Length = 505 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 56/209 (26%), Positives = 101/209 (48%), Gaps = 24/209 (11%) Query: 171 LTVAGRTLIYRQIENSFTQPNAG---INVHMLEWVLA-ATKGIQGD--LLELYCGNGNFS 224 LT+ LI+R + F +N +E + + A++ ++ D LL+L+CG+G S Sbjct: 225 LTIGDNYLIHRVKDKKFKISKDDFFQVNDSQIENLYSEASQYLEKDKKLLDLFCGSGISS 284 Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284 + LA D ++ +EI K +++ A N AN + + K + ++ Q Sbjct: 285 MALAN--DHIVGIEINKSAIKDAIENAEANGLKDYKFIAKNANYIDQKF----------- 331 Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLS-ILSTTHTI 341 I + T+ +DPPR+GLD + + +I+YISCNP +L RD+ + + + Sbjct: 332 --IKKEKIGTVTIDPPRAGLDKEIIKTLAKTQIKNIIYISCNPQTLARDIKRFMDRGYEL 389 Query: 342 ERLALFDQFPYTRHMECGVLLVRKPSGWH 370 +R+ D F + H+E LL + + H Sbjct: 390 KRIKAVDMFAQSMHVETVALLSKLNTEHH 418 >gi|288925116|ref|ZP_06419052.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella buccae D17] gi|288338306|gb|EFC76656.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella buccae D17] Length = 480 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 57/184 (30%), Positives = 87/184 (47%), Gaps = 16/184 (8%) Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDLL--ELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 SF Q N H+ V + GD L +LY G G + +AR +V+ +E + Sbjct: 309 SFYQTNTEQAYHLYS-VAREFSQLTGDELVYDLYTGTGTIANFVAREAKQVIGIEYVPEA 367 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 +E A+ N N ++N K+ EF R R I DPPR+G Sbjct: 368 IEDAKVNSEINGIDNTLFYAGDMKDILN-----DEFIR------QHGRPDVIITDPPRAG 416 Query: 304 LD-DATVGMVQAYPH-ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVL 361 + D ++ A P I+Y+SCNP + RDL++L + +E + D FP+T H+E VL Sbjct: 417 MHADVVNTILHAAPRRIVYVSCNPATQARDLNLLDVDYRVEEVQPVDMFPHTPHVENVVL 476 Query: 362 LVRK 365 L+R+ Sbjct: 477 LIRR 480 >gi|228919254|ref|ZP_04082624.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228840361|gb|EEM85632.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 454 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 46/149 (30%), Positives = 77/149 (51%), Gaps = 15/149 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G+ SL LA+ +V VEI ++E A N N++ N + ++ Sbjct: 311 VIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRNATLNNMTNAEFGVGEAEVVIPK 370 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330 +E + D T+ VDPPR G D+A + ++ P+ ++Y+SCNP +L R Sbjct: 371 WYKE---GVIAD---------TMVVDPPRKGCDEALLNTIIDMKPNRVVYVSCNPATLAR 418 Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMEC 358 DL +L + + + D FP+T H+EC Sbjct: 419 DLKVLEEGGYKTQEVQPVDMFPHTTHVEC 447 >gi|194018043|ref|ZP_03056649.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus pumilus ATCC 7061] gi|194010288|gb|EDW19864.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus pumilus ATCC 7061] Length = 461 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 45/155 (29%), Positives = 78/155 (50%), Gaps = 14/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G + L+ V +++ K S++ A+ N + + N V +++ + Sbjct: 319 IVDAYCGVGTIGMWLSDGAKEVRGMDVIKESIDDAKKNAKKHGMKNATYVTGTAEHWLPK 378 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYPH-ILYISCNPDSLCR 330 +E +R I VDPPR+G + + V Q P ++Y+SCNP +L + Sbjct: 379 WVKE------------GFRPDVIVVDPPRTGCERTFLDTVKQVKPKRLVYVSCNPSTLAK 426 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 DL +S + IE + D FP+T H+E V LV+K Sbjct: 427 DLEYISKDYKIEYMQPVDMFPHTAHVETVVSLVKK 461 >gi|241889432|ref|ZP_04776733.1| 23S rRNA-methyltransferase RumA [Gemella haemolysans ATCC 10379] gi|241863975|gb|EER68356.1| 23S rRNA-methyltransferase RumA [Gemella haemolysans ATCC 10379] Length = 451 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 47/155 (30%), Positives = 74/155 (47%), Gaps = 15/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +L+ YCG G ++R+ V V+I ++E A N+ N++ N V + + Sbjct: 310 VLDAYCGVGTIGQYVSRNCKEVYGVDIIPAAIEDANDNVKLNNLKNCTYVAGDANKIVPR 369 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM--VQAYPHILYISCNPDSLCR 330 +++ F VDPPR GL + V+A I+Y+SCNP +L R Sbjct: 370 WKKK------------GINFDVAIVDPPRVGLGPLAKNLLAVEA-KKIVYVSCNPSTLAR 416 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 DL +L+ + I R+ D FP T +E V L+RK Sbjct: 417 DLKVLTRKYKIRRIQPVDMFPGTAAVEAVVELIRK 451 >gi|289548942|ref|YP_003473930.1| RNA methyltransferase, TrmA family [Thermocrinis albus DSM 14484] gi|289182559|gb|ADC89803.1| RNA methyltransferase, TrmA family [Thermocrinis albus DSM 14484] Length = 424 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 54/181 (29%), Positives = 92/181 (50%), Gaps = 18/181 (9%) Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEI 239 YR +SF Q N + + VL + ++ +E++CG G FSL L++ + + A ++ Sbjct: 251 YRVSADSFLQVNYTLYEEFVNAVLEKVQRVR-KAVEIHCGIGFFSLPLSQRAEFLYASDV 309 Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299 + +V A+Y+ N V+ V V ER + LK ++ + VDP Sbjct: 310 NQVAVRDAQYSARINSVDKVVFV------------HERAVDTLK--NLAGEVIDLLVVDP 355 Query: 300 PRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHM 356 PR GL + ++ +I+Y+SCNP +L RDL +LS ++++ + L D FP T H+ Sbjct: 356 PREGLSEGETQLILSNKPKNIVYVSCNPSTLARDLKVLSKGGYSLKVIRLVDNFPQTYHV 415 Query: 357 E 357 E Sbjct: 416 E 416 >gi|167760470|ref|ZP_02432597.1| hypothetical protein CLOSCI_02844 [Clostridium scindens ATCC 35704] gi|167661836|gb|EDS05966.1| hypothetical protein CLOSCI_02844 [Clostridium scindens ATCC 35704] Length = 460 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 70/262 (26%), Positives = 116/262 (44%), Gaps = 35/262 (13%) Query: 118 IVTLIYHRLLDDA----W------RECAIRLRDALHARKYQIQLIGRANKTKICLDRDYV 167 IVT H +++A W E ++ LH + + + + + T+I +D+ Sbjct: 215 IVTTTEHNFIEEAGGNQWVSQLLSLELDGKIAGILHTKNDSLADVVKDDGTEILYGQDFF 274 Query: 168 DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSL 225 E L L ++ SF Q N+ + +L G D L +LY G G + Sbjct: 275 YEELL----GLKFKITPFSFFQTNS-LGAEVLYEKTREYIGETKDKVLFDLYSGTGTIAQ 329 Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285 ++A +V+ VEI + +VEAAR N A N ++N ++ E + D+ Sbjct: 330 IVAPVAKKVVGVEIVEEAVEAARENAALNGLDNCTFWA------GDVLKVIDELGEVPDV 383 Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSIL-STTHTIE 342 I +DPPR G+ + + + ++YI+C P SL RDL +L + +E Sbjct: 384 ---------IILDPPRDGVHPKALEKITNFGVERMVYIACKPTSLARDLEMLQGRGYRVE 434 Query: 343 RLALFDQFPYTRHMECGVLLVR 364 R+ D FP T H+E VL+ R Sbjct: 435 RMGCVDLFPGTVHVETVVLMSR 456 >gi|313623417|gb|EFR93632.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria innocua FSL J1-023] Length = 459 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 47/153 (30%), Positives = 73/153 (47%), Gaps = 16/153 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L++ YCG G A V ++I S+E A+ N N + NV + + Sbjct: 315 LVDAYCGVGTIGQAFAGKVKEVRGMDIIPESIEDAKRNAEKNGIENV---------YYEV 365 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG---MVQAYPHILYISCNPDSLC 329 + E + + +R + VDPPRSG D + V+A ++Y+SCNP +L Sbjct: 366 GKAEDVLPKWVN---EGFRPDAVIVDPPRSGCDQGLIKSLLQVEAK-QLVYVSCNPSTLA 421 Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362 RDL++L+ + I + D FP T H+E VLL Sbjct: 422 RDLALLAKKYRIRYMQPVDMFPQTAHVETVVLL 454 >gi|291460187|ref|ZP_06599577.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Oribacterium sp. oral taxon 078 str. F0262] gi|291417134|gb|EFE90853.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Oribacterium sp. oral taxon 078 str. F0262] Length = 602 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 61/188 (32%), Positives = 92/188 (48%), Gaps = 17/188 (9%) Query: 186 SFTQPNAGINVHMLEWVL--AATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 SF Q N + E VL +A G + ++ +LYCG G SL+L+ RV +EI + Sbjct: 335 SFYQVNPVQTERIYETVLEFSALSGTE-NVFDLYCGIGTISLLLSAAAGRVYGIEIIPDA 393 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 V AR N N + N +++E E R ID+ + VDPPR G Sbjct: 394 VRDARENAERNGIENAYFFTGAAEELLPRWHAEHPGER---IDL-------VCVDPPRKG 443 Query: 304 LDDATV-GMVQAYPH-ILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGV 360 D+ + ++ P ++Y+SC+P +L RD+ L + + R+ FD FP T H+E V Sbjct: 444 CDERCLETIISMSPERLIYVSCDPATLARDIKYLREHGYELRRIRPFDNFPETVHIET-V 502 Query: 361 LLVRKPSG 368 L+ K SG Sbjct: 503 CLLSKFSG 510 >gi|289523129|ref|ZP_06439983.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503672|gb|EFD24836.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 453 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 60/212 (28%), Positives = 97/212 (45%), Gaps = 23/212 (10%) Query: 155 ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL 214 +KT+ +D + ER + +R + F Q N M E V + + +L Sbjct: 259 GSKTQSLFGKDVLVERF----ENIKFRFGVSDFFQVNVLQAFRMFETVAELARDSK-HVL 313 Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274 ELY G G+ + LA + ++AVE +P+ E+ N+ N +NNV + +++ + Sbjct: 314 ELYSGVGSMTAFLASFCNDIVAVEEWRPAYESLVSNMTNNGINNVTAICGKAEDVVKTKV 373 Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDAT---VGMVQAYPHILYISCNPDSLCRD 331 S F + VDPPR+G +G V + ++Y+SCNP +L RD Sbjct: 374 --------------SGHFDIVVVDPPRTGCHKDVLNFIGRVISPKKVIYVSCNPATLARD 419 Query: 332 LSILST-THTIERLALFDQFPYTRHMECGVLL 362 IL+ + +E D FP T H+E VLL Sbjct: 420 SKILNEYGYNMENAMPLDMFPQTSHVESVVLL 451 >gi|227554844|ref|ZP_03984891.1| TrmA family tRNA (uracil-5-)-methyltransferase [Enterococcus faecalis HH22] gi|312900324|ref|ZP_07759635.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX0470] gi|312904253|ref|ZP_07763415.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX0635] gi|227176013|gb|EEI56985.1| TrmA family tRNA (uracil-5-)-methyltransferase [Enterococcus faecalis HH22] gi|310632349|gb|EFQ15632.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX0635] gi|311292512|gb|EFQ71068.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX0470] gi|315031445|gb|EFT43377.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX0017] gi|315166923|gb|EFU10940.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX1341] gi|315575356|gb|EFU87547.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX0309B] gi|315578799|gb|EFU90990.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX0630] gi|315581386|gb|EFU93577.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX0309A] Length = 504 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 46/155 (29%), Positives = 78/155 (50%), Gaps = 15/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G L LA+ +V +E+ + +V+ A N N++ N FT Sbjct: 359 VVDAYCGIGTIGLTLAQDAKQVYGIEVIEEAVKDAENNAKLNNIENAT--------FTAG 410 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330 + E L + + + + VDPPR GLD V +++ P I+Y+SCNP +L R Sbjct: 411 LAEE----LLPKLVENGLQPDVVVVDPPRKGLDGQLVNTLIETQPERIVYVSCNPATLAR 466 Query: 331 DLSILS-TTHTIERLALFDQFPYTRHMECGVLLVR 364 D+++L+ + + + D FP T H+E LL + Sbjct: 467 DIALLTEGGYEAKEIQPVDNFPQTTHIESVTLLTK 501 >gi|307325080|ref|ZP_07604284.1| deoxyribonuclease/rho motif-related TRAM [Streptomyces violaceusniger Tu 4113] gi|306889226|gb|EFN20208.1| deoxyribonuclease/rho motif-related TRAM [Streptomyces violaceusniger Tu 4113] Length = 447 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 66/206 (32%), Positives = 100/206 (48%), Gaps = 27/206 (13%) Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGN 222 R +V ER AGRT +R E F Q + ++E V+ QG+ L+LYCG G Sbjct: 255 RPFVRER--AAGRT--WRVGEAGFWQVHPKAADVLVEAVMQGLMPRQGETALDLYCGVGL 310 Query: 223 FSLVLARHFDR---VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279 F+ +A VL +E +K SVE AR+N+ +++ VR+ + Q + R Sbjct: 311 FAGAIAERVGERGAVLGIESSKRSVEDARHNL-----QDLERVRIEHGKVEQVLPR---- 361 Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSIL-S 336 + + D+ I +DPPR+G TV + A I Y++C+P +L RDL Sbjct: 362 TGITEADL-------IVLDPPRAGAGKETVTRLAALGARRIAYVACDPAALARDLKYFRE 414 Query: 337 TTHTIERLALFDQFPYTRHMECGVLL 362 ++ R FD FP T H+EC +L Sbjct: 415 EGYSPRRTRAFDLFPVTHHVECVAVL 440 >gi|302333562|gb|ADL23755.1| putative RNA methyltransferase [Staphylococcus aureus subsp. aureus JKD6159] Length = 453 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 45/152 (29%), Positives = 71/152 (46%), Gaps = 14/152 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +L+ YCG G L +A H V VE+ ++E A+ N N NN V ++E Sbjct: 311 VLDTYCGIGTIGLYMAPHAKHVYGVEVVPSAIEDAQQNATINQCNNTTFVCGKAEEVILQ 370 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330 + + + + VDPPR G D+ + ++ P I+YISCNP + R Sbjct: 371 WKAQ------------GIKPDVVMVDPPRKGCDETFIQTLLTLEPKRIVYISCNPATQQR 418 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLL 362 D+ +L+ + +E + D FP T H+E L Sbjct: 419 DVLLLAEKYQLEEVTPVDMFPQTTHVETVALF 450 >gi|227329137|ref|ZP_03833161.1| 23S rRNA 5-methyluridine methyltransferase [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 449 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 58/195 (29%), Positives = 91/195 (46%), Gaps = 19/195 (9%) Query: 173 VAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNFSLVLARHF 231 VAG TL + F Q N +N M+ LA Q +L+L+CG GNF+L LA+ Sbjct: 262 VAGLTLAFS--PRDFIQVNDAVNQQMVAQALAWLDVQPQDRILDLFCGMGNFTLPLAQRA 319 Query: 232 DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNRLKDIDIHSY 290 V+ VE VE R N N ++NV + + TQ + F++ Sbjct: 320 ASVVGVEGVTALVEKGRENAQRNGLSNVTFFHQNLEDDVTQQPWAAQGFDK--------- 370 Query: 291 RFKTIFVDPPRSGLDDATVGMVQAYPH-ILYISCNPDSLCRDLSI-LSTTHTIERLALFD 348 I +DP R+G + + P ++Y+SCN +L RD + L+ + + +A+ D Sbjct: 371 ----ILLDPARAGAAGVMEQITRLAPERVVYVSCNATTLARDSKVLLAAGYRLANVAMLD 426 Query: 349 QFPYTRHMECGVLLV 363 FP+T H+E L + Sbjct: 427 MFPHTGHLESMALFL 441 >gi|32033638|ref|ZP_00133949.1| COG2265: SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126207796|ref|YP_001053021.1| 23S rRNA 5-methyluridine methyltransferase [Actinobacillus pleuropneumoniae L20] gi|126096588|gb|ABN73416.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Actinobacillus pleuropneumoniae serovar 5b str. L20] Length = 442 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 55/185 (29%), Positives = 88/185 (47%), Gaps = 23/185 (12%) Query: 187 FTQPNAGINVHM----LEWV-LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241 F Q N +N M LEW+ L+A Q +L+L+CG GNF+L +A+ V+ VE + Sbjct: 274 FIQVNGDLNEKMVDKALEWLDLSA----QDRVLDLFCGMGNFTLPIAKQAGFVVGVEGVE 329 Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301 P V A+ N + + NV + + E D S F + +DP R Sbjct: 330 PMVAQAKQNRDTSGLKNVAFYQTNLDE------------PFADKPWASEPFNKVLLDPAR 377 Query: 302 SGLDDATVGMVQAYPH-ILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHMECG 359 +G + P I+Y+SCNP +L RD ++ + +++ A+ D FP+T H+E Sbjct: 378 NGAFFCLDHLAALNPGTIVYVSCNPATLVRDAEKLIQAGYKLQKAAMIDMFPHTGHLESI 437 Query: 360 VLLVR 364 L + Sbjct: 438 SLFTK 442 >gi|293392822|ref|ZP_06637140.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Serratia odorifera DSM 4582] gi|291424681|gb|EFE97892.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Serratia odorifera DSM 4582] Length = 449 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 51/183 (27%), Positives = 86/183 (46%), Gaps = 21/183 (11%) Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 F Q N +N M+ L + D +L+L+CG GNF+L LAR V+ +E V Sbjct: 272 FIQVNDAVNQQMVAQALEWLELQPNDRVLDLFCGMGNFTLPLARRAKAVVGIEGVATLVA 331 Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDPPRS 302 +YN N +NN + ++ D++ + F + +DP R+ Sbjct: 332 NGQYNAHKNLLNNASFFHENLED---------------DVERQPWAAQGFDKVMLDPARA 376 Query: 303 GLDDATVGMVQAYPH-ILYISCNPDSLCRDLSI-LSTTHTIERLALFDQFPYTRHMECGV 360 G +V+ P ++Y+SCNP +L RD + L+ + + R+ + D FP+T H+E Sbjct: 377 GAAGVMSHIVKLAPERVVYVSCNPSTLARDSKVLLAAGYRLARVRMLDMFPHTGHLESMA 436 Query: 361 LLV 363 L + Sbjct: 437 LFI 439 >gi|320580356|gb|EFW94579.1| tRNA methyltransferase [Pichia angusta DL-1] Length = 544 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 56/196 (28%), Positives = 97/196 (49%), Gaps = 24/196 (12%) Query: 183 IENSFTQPNAGINVHMLEWV---LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEI 239 + N F Q N I +L++V LA + L++ YCG+G FS+ A + L VEI Sbjct: 362 VANEFFQNNNSILPKVLDYVKSNLALDESGDSYLVDAYCGSGLFSISCASSVRKSLGVEI 421 Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299 + S++ A+ N+ N ++N + + +++ + + +F + K ++ +DP Sbjct: 422 SAHSIKFAKRNVELNDIHNCEFIEGKAEKLFEKI----DFPKDK---------TSVILDP 468 Query: 300 PRSGLDDATV-GMVQAYPH-ILYISCNPDSLCRDLSILSTT------HTIERLALFDQFP 351 PR G D+ + + + YP I+Y+SCN S RD+ T + +E + FD FP Sbjct: 469 PRKGCDEVFLRQLAEFYPKRIVYVSCNVHSQARDVEYFLTETEKGKDYKVESIIGFDFFP 528 Query: 352 YTRHMECGVLLVRKPS 367 T H+E +L R S Sbjct: 529 QTHHVEGVAVLSRATS 544 >gi|313637500|gb|EFS02936.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria seeligeri FSL S4-171] Length = 459 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 45/152 (29%), Positives = 73/152 (48%), Gaps = 14/152 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L++ YCG G A V ++ S+E A+ N N + NV + + Sbjct: 315 LVDAYCGVGTIGQAFASKVKEVRGIDTIPESIEDAKRNAEKNGLENV---------YYEV 365 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQA-YPHILYISCNPDSLCR 330 + E F + ++ + VDPPRSG D + ++QA ++Y+SCNP +L R Sbjct: 366 GKAEDVFPKWMK---EGFKPDAVIVDPPRSGCDQGLIQSLLQAEAKQLVYVSCNPSTLAR 422 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLL 362 DL++L+ + + + D FP T H+E VLL Sbjct: 423 DLALLAKKYRVRYMQPVDMFPQTAHVETVVLL 454 >gi|313608342|gb|EFR84315.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria monocytogenes FSL F2-208] Length = 459 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 47/153 (30%), Positives = 72/153 (47%), Gaps = 16/153 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L++ YCG G A V ++I S+E A+ N N + NV +++ Sbjct: 315 LVDAYCGVGTIGQAFAGKVKEVRGMDIIPESIEDAKRNAEKNGIENVYYEVGKAEDVLPK 374 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM---VQAYPHILYISCNPDSLC 329 +E +R + VDPPRSG D + V+A ++Y+SCNP +L Sbjct: 375 WVKE------------GFRPDAVIVDPPRSGCDQGLIKSLLEVEAK-QLVYVSCNPSTLA 421 Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362 RDL++L+ + I + D FP T H+E VLL Sbjct: 422 RDLALLAKKYRIRYMQPVDMFPQTAHVETVVLL 454 >gi|255657938|ref|ZP_05403347.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Mitsuokella multacida DSM 20544] gi|260850131|gb|EEX70138.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Mitsuokella multacida DSM 20544] Length = 457 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 48/158 (30%), Positives = 78/158 (49%), Gaps = 16/158 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G +L LA+ V +EI KP++ A+ N N+V N + + + E Sbjct: 312 VIDAYCGTGTITLFLAQKAREVYGIEIVKPAILDAQKNARDNNVRNAEFIVGDATEVMPR 371 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCR 330 + ++ R + VDPPR+G + + P I+Y+SCNP SL R Sbjct: 372 LYKQ------------GVRADVVVVDPPRAGCTETVLKTFANMQPDRIVYVSCNPASLAR 419 Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVRKPS 367 DL++L + +++ D FP T H+E V L+ K S Sbjct: 420 DLAVLEQLGYKAKKVQPVDMFPMTSHVET-VALIEKVS 456 >gi|299535232|ref|ZP_07048556.1| putative RNA methyltransferase [Lysinibacillus fusiformis ZC1] gi|298729353|gb|EFI69904.1| putative RNA methyltransferase [Lysinibacillus fusiformis ZC1] Length = 455 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 53/156 (33%), Positives = 77/156 (49%), Gaps = 19/156 (12%) Query: 209 IQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266 +QGD +++ YCG G SL LA+ V+ VEI ++E A+ N N N + Sbjct: 305 LQGDERVIDAYCGIGTISLFLAQKAKTVMGVEIVPQAIEDAKRNALLNGFTNTYFEAGPA 364 Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA--TVGMVQAYPHILYISCN 324 +E R + K+ D+ + VDPPR G D+A T + Q ++Y+SCN Sbjct: 365 EEVI-----PRWYKEGKEADV-------LVVDPPRKGCDEALLTTILEQRPKRVVYVSCN 412 Query: 325 PDSLCRDLSILSTT--HTIERLALFDQFPYTRHMEC 358 P +L RDL IL HT E + D FP++ H E Sbjct: 413 PATLARDLRILEDGGYHTQE-IQPVDMFPHSTHCEA 447 >gi|312864156|ref|ZP_07724390.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus vestibularis F0396] gi|311100157|gb|EFQ58366.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus vestibularis F0396] Length = 451 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 84/386 (21%), Positives = 156/386 (40%), Gaps = 52/386 (13%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPNLQIFR-------SEPIHYRMRAEFHIWHDGDDLYHI 61 +Y++QL K D L Q + F+ N + + +P HYR + +F G + Sbjct: 88 RYDKQLEFKTDLLGQALKKFKPANFESYEIRPTIGMEQPQHYRAKLQFQTRSFGGSVKAG 147 Query: 62 MFDQQTKERMRIDYFMPGSLLINALM-------------------IEMMATIRLEPLLRA 102 +F + + + ID + L A+M I + T+ + L + Sbjct: 148 LFAEGSHRLINIDDCLVQDELTQAMMNKVTSLLDKYKLPIYNERKISGIRTVMIRRALGS 207 Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162 Q+ ++TS+S ++ L+ L + E + +++ +I +T+I Sbjct: 208 NQVQLIFVTSKS-VSLTKLVKELTL--RYPEIVTVAINYNYSKSSEIY----GQETEIIW 260 Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNG 221 +D + E + L R +F Q N + + A + + + L++ YCG G Sbjct: 261 GQDTIQEEVLDYNFALSPR----AFYQLNPKQTEVLYSQAVEALEVDKDEHLIDAYCGVG 316 Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281 L + ++I ++E AR N + + N +++ +E Sbjct: 317 TIGLAFVNKVKSIRGMDIIPEAIEDARKNAKSLGLGNTHYEVGKAEDIIPRWYKE----- 371 Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTTH 339 YR + VDPPR+GLDD + + Y ++Y+SCN +L RDL L+ + Sbjct: 372 -------GYRADALIVDPPRTGLDDKLLKTILEYTPKKMVYVSCNVSTLARDLVSLAKVY 424 Query: 340 TIERLALFDQFPYTRHMECGVLLVRK 365 + + D FP+T E V L +K Sbjct: 425 DVNYIQSVDMFPHTARTEAVVKLTKK 450 >gi|268611139|ref|ZP_06144866.1| RNA methyltransferase [Ruminococcus flavefaciens FD-1] Length = 416 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 53/160 (33%), Positives = 77/160 (48%), Gaps = 19/160 (11%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 LL+LYCG G L +A +V+ VE+ ++E A+ N ++N + + E Sbjct: 271 LLDLYCGAGAIGLSMADTVGKVIGVEVVPQAIEDAKANAKRAGISNAEFFAGDAGEIAAK 330 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD----DATVGMVQAYPHILYISCNPDSL 328 E R DI I +DPPR G D DA + M + I+ ISCNP + Sbjct: 331 FAAE---GRKPDI---------IVLDPPRKGCDTLTLDACLEMAPS--RIVMISCNPSTA 376 Query: 329 CRDLSILS-TTHTIERLALFDQFPYTRHMECGVLLVRKPS 367 RD + L T++ L D FP T+H+EC VL+ R+ S Sbjct: 377 ARDAAYLCENGFTLDVLRPADFFPRTKHVECVVLMSRQKS 416 >gi|29375324|ref|NP_814478.1| RNA methyltransferase [Enterococcus faecalis V583] gi|256617615|ref|ZP_05474461.1| RNA methyltransferase [Enterococcus faecalis ATCC 4200] gi|256761497|ref|ZP_05502077.1| RNA methyltransferase [Enterococcus faecalis T3] gi|257089155|ref|ZP_05583516.1| RNA methyltransferase [Enterococcus faecalis CH188] gi|257418339|ref|ZP_05595333.1| RNA methyltransferase trmA [Enterococcus faecalis T11] gi|50401543|sp|Q837V0|Y728_ENTFA RecName: Full=Uncharacterized RNA methyltransferase EF_0728 gi|29342784|gb|AAO80548.1| RNA methyltransferase, TrmA family [Enterococcus faecalis V583] gi|256597142|gb|EEU16318.1| RNA methyltransferase [Enterococcus faecalis ATCC 4200] gi|256682748|gb|EEU22443.1| RNA methyltransferase [Enterococcus faecalis T3] gi|256997967|gb|EEU84487.1| RNA methyltransferase [Enterococcus faecalis CH188] gi|257160167|gb|EEU90127.1| RNA methyltransferase trmA [Enterococcus faecalis T11] Length = 457 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 46/155 (29%), Positives = 79/155 (50%), Gaps = 15/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G L LA+ +V +E+ + +V+ A NN K+ + + FT Sbjct: 312 VVDAYCGIGTIGLTLAQDAKQVYGIEVIEEAVKDAE--------NNAKLNNIENATFTAG 363 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330 + E L + + + + VDPPR GLD V +++ P I+Y+SCNP +L R Sbjct: 364 LAEE----LLPKLVENGLQPDVVVVDPPRKGLDGQLVNTLIETQPERIVYVSCNPATLAR 419 Query: 331 DLSILS-TTHTIERLALFDQFPYTRHMECGVLLVR 364 D+++L+ + + + D FP T H+E LL + Sbjct: 420 DIALLTEGGYEAKEIQPVDNFPQTTHIESVTLLTK 454 >gi|291531341|emb|CBK96926.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Eubacterium siraeum 70/3] Length = 449 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 44/155 (28%), Positives = 73/155 (47%), Gaps = 15/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +L+LYCG G L +AR +++ VEI ++E A+ N AN + N + + + E + Sbjct: 305 VLDLYCGAGTIGLSMARTAKKIIGVEIVPEAIENAKQNALANGITNCEFICADAAEAARI 364 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330 + + R I VDPPR G + A+ P I+ +SCN + R Sbjct: 365 LHS------------RNLRPDVIMVDPPRKGCGRDACEQIAAFSAPRIVMVSCNAATAAR 412 Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364 D + + ++ ++ D F T H+EC VLL + Sbjct: 413 DCAYFAELGYSTDKCVAVDMFSGTNHVECVVLLTK 447 >gi|224024090|ref|ZP_03642456.1| hypothetical protein BACCOPRO_00809 [Bacteroides coprophilus DSM 18228] gi|224017312|gb|EEF75324.1| hypothetical protein BACCOPRO_00809 [Bacteroides coprophilus DSM 18228] Length = 504 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 58/210 (27%), Positives = 97/210 (46%), Gaps = 26/210 (12%) Query: 174 AGRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGDLL--ELYCGNGNF 223 +G+ I+ ++E SF Q N+ + L V G++GD L +LY G G Sbjct: 308 SGKDHIFEEMEGLRFKVGPKSFYQTNSE-QAYNLYKVAREFAGLEGDELVYDLYTGTGTI 366 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE-FTQAMRREREFNRL 282 + ++R +V+ +E ++E A+ N N + N K+ T+ RE Sbjct: 367 ANFVSRRARKVIGIEYVPEAIEDAKVNSQINGITNTLFYAGDMKDILTEDFIREHG---- 422 Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYPH-ILYISCNPDSLCRDLSILSTTHT 340 R I DPPR+G+ + + ++ A P I+Y+SCNP + RDL +L + Sbjct: 423 --------RPDVIITDPPRAGMHNDVINVILAAEPKRIVYVSCNPATQARDLQLLDGKYK 474 Query: 341 IERLALFDQFPYTRHMECGVLLVRKPSGWH 370 + + D FP+T H+E VLL ++ H Sbjct: 475 VTAVQPVDMFPHTHHVENVVLLEKREEPKH 504 >gi|16803743|ref|NP_465228.1| hypothetical protein lmo1703 [Listeria monocytogenes EGD-e] gi|224499575|ref|ZP_03667924.1| hypothetical protein LmonF1_07712 [Listeria monocytogenes Finland 1988] gi|224503372|ref|ZP_03671679.1| hypothetical protein LmonFR_12800 [Listeria monocytogenes FSL R2-561] gi|254829227|ref|ZP_05233914.1| RNA methyltransferase [Listeria monocytogenes FSL N3-165] gi|254832408|ref|ZP_05237063.1| hypothetical protein Lmon1_13719 [Listeria monocytogenes 10403S] gi|254900792|ref|ZP_05260716.1| hypothetical protein LmonJ_13289 [Listeria monocytogenes J0161] gi|254913722|ref|ZP_05263734.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria monocytogenes J2818] gi|254938109|ref|ZP_05269806.1| RNA methyltransferase [Listeria monocytogenes F6900] gi|50401633|sp|Q8Y6I1|Y1703_LISMO RecName: Full=Uncharacterized RNA methyltransferase lmo1703 gi|16411157|emb|CAC99781.1| lmo1703 [Listeria monocytogenes EGD-e] gi|258601638|gb|EEW14963.1| RNA methyltransferase [Listeria monocytogenes FSL N3-165] gi|258610721|gb|EEW23329.1| RNA methyltransferase [Listeria monocytogenes F6900] gi|293591737|gb|EFG00072.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria monocytogenes J2818] Length = 459 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 47/153 (30%), Positives = 72/153 (47%), Gaps = 16/153 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L++ YCG G A V ++I S+E A+ N N + NV +++ Sbjct: 315 LVDAYCGVGTIGQAFAGKVKEVRGMDIIPESIEDAKRNAEKNGIENVYYEVGKAEDVLPK 374 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM---VQAYPHILYISCNPDSLC 329 +E +R + VDPPRSG D + V+A ++Y+SCNP +L Sbjct: 375 WVKE------------GFRPDAVIVDPPRSGCDQGLIKSLLDVEAK-QLVYVSCNPSTLA 421 Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362 RDL++L+ + I + D FP T H+E VLL Sbjct: 422 RDLALLAKKYRIRYMQPVDMFPQTAHVETVVLL 454 >gi|117926892|ref|YP_867509.1| RNA methyltransferase [Magnetococcus sp. MC-1] gi|117610648|gb|ABK46103.1| 23S rRNA m(5)U-1939 methyltransferase [Magnetococcus sp. MC-1] Length = 424 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 95/361 (26%), Positives = 163/361 (45%), Gaps = 33/361 (9%) Query: 15 AEKVDRLRQMMLAFQVPNLQIFRS-EP-IHYRMRAEFHIWHDGDDLYHIMFDQQTKERMR 72 A V Q + F+ P +Q +S +P YR R I+ D + ++ QT + Sbjct: 89 AAVVKEALQHIGKFENPPMQPLQSAQPETGYRRRCGLKIYWVRD--HAVVGFYQTASKRI 146 Query: 73 IDYFMPGSLLINALMIEMMATIRL---EPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDD 129 +D +P +++ + ++ IR E +R +L Q+D S D+ V +I H L Sbjct: 147 VD--LPNCPILHPKLDALIHPIRTLVSELSVRERLPQVDL--SCGDEG-VGMILHLLRKL 201 Query: 130 AWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQ 189 + ++ I L H K I K + R + G++ + + + FTQ Sbjct: 202 SAKDKEI-LTTFAHTHKIDQLWIQSGRKEDLTPFISQEPLRYSPDGKSQL-KFMPGDFTQ 259 Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249 + N ++E VLA G +L+L+ G GNF+L LAR F RV E +P+V+ R Sbjct: 260 AHFEQNRQLVEQVLAWI-GQGQRVLDLFSGLGNFTLPLARQFTRVTGYESYEPAVKRGRS 318 Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309 N + K + + F++ + N++ + VDPPR G + Sbjct: 319 NTTLHPSVTFKTMDL----FSETALKTLPLNQV----------DAMVVDPPRDGAVNLAK 364 Query: 310 GMVQA--YPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRKP 366 + A I+++SC+P + RD +IL + +T+E++ D FP T H+E V L ++P Sbjct: 365 QIKDAGGPATIVWVSCDPATFARDAAILCAGGYTMEQVKPLDMFPMTSHVEV-VALFKRP 423 Query: 367 S 367 S Sbjct: 424 S 424 >gi|217964147|ref|YP_002349825.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria monocytogenes HCC23] gi|217333417|gb|ACK39211.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria monocytogenes HCC23] gi|307571286|emb|CAR84465.1| RNA methyltransferase, TrmA/RumA/YfjO family [Listeria monocytogenes L99] Length = 458 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 47/153 (30%), Positives = 72/153 (47%), Gaps = 16/153 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L++ YCG G A V ++I S+E A+ N N + NV +++ Sbjct: 315 LVDAYCGVGTIGQAFAGKVKEVRGMDIIPESIEDAKRNAEKNGIENVYYEVGKAEDVLPK 374 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM---VQAYPHILYISCNPDSLC 329 +E +R + VDPPRSG D + V+A ++Y+SCNP +L Sbjct: 375 WVKE------------GFRPDAVIVDPPRSGCDQGLIKSLLDVEAK-QLVYVSCNPSTLA 421 Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362 RDL++L+ + I + D FP T H+E VLL Sbjct: 422 RDLALLAKKYRIRYMQPVDMFPQTAHVETVVLL 454 >gi|332879258|ref|ZP_08446955.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332682678|gb|EGJ55578.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 491 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 63/207 (30%), Positives = 97/207 (46%), Gaps = 24/207 (11%) Query: 171 LTVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGDLL--ELYCGN 220 +T G IY Q+EN SF Q N + L V G+ G L +LY G Sbjct: 296 ITFRGNDHIYLQMENLRFKVGPKSFYQTNTD-QAYELYKVARDFAGLTGTELVYDLYTGT 354 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G + +A +V+ +E ++E A+ N N + N K+ +EF Sbjct: 355 GTIANFVAGKARKVIGIEYVPEAIEDAKINSQINGIGNTLFFAGDMKDILN-----KEF- 408 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGL-DDATVGMVQAYPH-ILYISCNPDSLCRDLSILSTT 338 I H + I DPPR+G+ D ++ A PH I+Y+SCNP + RDL++L + Sbjct: 409 ----ITAHG-QPDVIITDPPRAGMHKDVIETILFAAPHRIVYVSCNPATQARDLALLDSQ 463 Query: 339 HTIERLALFDQFPYTRHMECGVLLVRK 365 + I + D FP+T+H+E V+L R+ Sbjct: 464 YKIMGVRPVDMFPHTQHVENVVMLERR 490 >gi|307269782|ref|ZP_07551112.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX4248] gi|307272542|ref|ZP_07553795.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX0855] gi|306510827|gb|EFM79844.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX0855] gi|306513892|gb|EFM82494.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX4248] gi|315036107|gb|EFT48039.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX0027] gi|329576886|gb|EGG58371.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX1467] Length = 468 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 46/155 (29%), Positives = 79/155 (50%), Gaps = 15/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G L LA+ +V +E+ + +V+ A NN K+ + + FT Sbjct: 323 VVDAYCGIGTIGLTLAQDAKQVYGIEVIEEAVKDAE--------NNAKLNNIENATFTAG 374 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330 + E L + + + + VDPPR GLD V +++ P I+Y+SCNP +L R Sbjct: 375 LAEE----LLPKLVENGLQPDVVVVDPPRKGLDGQLVNTLIETQPERIVYVSCNPATLAR 430 Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364 D+++L+ + + + D FP T H+E LL + Sbjct: 431 DIALLTEGGYEAKEIQPVDNFPQTTHIESVTLLTK 465 >gi|257415298|ref|ZP_05592292.1| RNA methyltransferase [Enterococcus faecalis AR01/DG] gi|257157126|gb|EEU87086.1| RNA methyltransferase [Enterococcus faecalis ARO1/DG] Length = 457 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 46/155 (29%), Positives = 79/155 (50%), Gaps = 15/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G L LA+ +V +E+ + +V+ A NN K+ + + FT Sbjct: 312 VVDAYCGIGTIGLTLAQDAKQVYGIEVIEEAVKDAE--------NNAKLNNIENATFTAG 363 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330 + E L + + + + VDPPR GLD V +++ P I+Y+SCNP +L R Sbjct: 364 LAEE----LLPKLVENGLQPDVVVVDPPRKGLDGQLVNTLIETQPERIVYVSCNPATLAR 419 Query: 331 DLSILS-TTHTIERLALFDQFPYTRHMECGVLLVR 364 D+++L+ + + + D FP T H+E LL + Sbjct: 420 DIALLTEGGYEAKEIQPVDNFPQTTHIESVTLLTK 454 >gi|299140681|ref|ZP_07033819.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella oris C735] gi|298577647|gb|EFI49515.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella oris C735] Length = 479 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 61/210 (29%), Positives = 93/210 (44%), Gaps = 26/210 (12%) Query: 169 ERLTVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGDLL--ELYC 218 E T G IY +E+ SF Q N H+ V A + G L +LY Sbjct: 283 ELTTFKGTDFIYETMEDLKFKVGSKSFYQTNTEQAYHLYS-VARAFAALTGKELVYDLYT 341 Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278 G G + +A +V+ +E ++E A+ N N ++N K Sbjct: 342 GTGTIANFVAHQAKQVIGIEYVPEAIEDAKENSKVNGIDNTLFYAGDMK----------- 390 Query: 279 FNRLKDIDIHSY-RFKTIFVDPPRSGLDDATVGMV-QAYPH-ILYISCNPDSLCRDLSIL 335 N L D IH + R I DPPR+G+ V ++ A P ++Y+SCNP + RDL ++ Sbjct: 391 -NILTDDFIHEHGRPDVIITDPPRAGMHPDVVQVILNAAPKRVVYVSCNPATQARDLQLM 449 Query: 336 STTHTIERLALFDQFPYTRHMECGVLLVRK 365 + + + D FP+T H+E VLL R+ Sbjct: 450 DADYKVTAVQPVDMFPHTPHVENVVLLERR 479 >gi|291556131|emb|CBL33248.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Eubacterium siraeum V10Sc8a] Length = 493 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 47/160 (29%), Positives = 75/160 (46%), Gaps = 16/160 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +L+LYCG G L +AR +++ VEI ++E A+ N AN + N + + + E + Sbjct: 305 VLDLYCGAGTIGLSMARTAKKIIGVEIVPEAIENAKQNALANGITNCEFICADAAEAARI 364 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330 + S R I VDPPR G + A+ P I+ +SCN + R Sbjct: 365 LHS------------RSLRPDVIMVDPPRKGCGRDACEQIAAFSAPRIVMVSCNAATAAR 412 Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLV-RKPSG 368 D + + ++ ++ D F T H+E VLL +KP G Sbjct: 413 DCACFAELGYSTDKCVAVDMFSGTNHVETVVLLSHKKPDG 452 >gi|257086087|ref|ZP_05580448.1| RNA methyltransferase [Enterococcus faecalis D6] gi|256994117|gb|EEU81419.1| RNA methyltransferase [Enterococcus faecalis D6] Length = 457 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 46/155 (29%), Positives = 79/155 (50%), Gaps = 15/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G L LA+ +V +E+ + +V+ A NN K+ + + FT Sbjct: 312 VVDAYCGIGTIGLTLAQDAKQVYGIEVIEEAVKDAE--------NNAKLNNIENATFTAG 363 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330 + E L + + + + VDPPR GLD V +++ P I+Y+SCNP +L R Sbjct: 364 LAEE----LLPKLVENGLQPDVVVVDPPRKGLDGQLVNTLIETQPERIVYVSCNPATLAR 419 Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364 D+++L+ + + + D FP T H+E LL + Sbjct: 420 DIALLTEGGYEAKEIQPVDNFPQTTHIESVTLLTK 454 >gi|256854405|ref|ZP_05559769.1| RNA methyltransferase [Enterococcus faecalis T8] gi|256709965|gb|EEU25009.1| RNA methyltransferase [Enterococcus faecalis T8] gi|315151570|gb|EFT95586.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX0012] gi|327534318|gb|AEA93152.1| 23S rRNA (uracil-5-)-methyltransferase [Enterococcus faecalis OG1RF] Length = 468 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 46/155 (29%), Positives = 79/155 (50%), Gaps = 15/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G L LA+ +V +E+ + +V+ A NN K+ + + FT Sbjct: 323 VVDAYCGIGTIGLTLAQDAKQVYGIEVIEEAVKDAE--------NNAKLNNIENATFTAG 374 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330 + E L + + + + VDPPR GLD V +++ P I+Y+SCNP +L R Sbjct: 375 LAEE----LLPKLVENGLQPDVVVVDPPRKGLDGQLVNTLIETQPERIVYVSCNPATLAR 430 Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364 D+++L+ + + + D FP T H+E LL + Sbjct: 431 DIALLTEGGYEAKEIQPVDNFPQTTHIESVTLLTK 465 >gi|254992434|ref|ZP_05274624.1| hypothetical protein LmonocytoFSL_04674 [Listeria monocytogenes FSL J2-064] Length = 459 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 47/153 (30%), Positives = 73/153 (47%), Gaps = 16/153 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L++ YCG G A V ++I S+E A+ N N + NV + + Sbjct: 315 LVDAYCGVGTIGQAFAGKVKEVRGMDIIPESIEDAKRNAEKNGIENV---------YYEV 365 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM---VQAYPHILYISCNPDSLC 329 + E + + +R + VDPPRSG D + V+A ++Y+SCNP +L Sbjct: 366 GKAEDVLPKWVN---EGFRPDAVIVDPPRSGCDQGLIKSLLDVEAK-QLVYVSCNPSTLA 421 Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362 RDL++L+ + I + D FP T H+E VLL Sbjct: 422 RDLALLAKKYRIRYMQPVDMFPQTAHVETVVLL 454 >gi|290894402|ref|ZP_06557365.1| RNA methyltransferase [Listeria monocytogenes FSL J2-071] gi|290556063|gb|EFD89614.1| RNA methyltransferase [Listeria monocytogenes FSL J2-071] Length = 459 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 47/153 (30%), Positives = 72/153 (47%), Gaps = 16/153 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L++ YCG G A V ++I S+E A+ N N + NV +++ Sbjct: 315 LVDAYCGVGTIGQAFAGKVKEVRGMDIIPESIEDAKRNAEKNGIENVYYEVGKAEDVLPK 374 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM---VQAYPHILYISCNPDSLC 329 +E +R + VDPPRSG D + V+A ++Y+SCNP +L Sbjct: 375 WVKE------------GFRPDAVIVDPPRSGCDQGLIKSLLDVEAK-QLVYVSCNPSTLA 421 Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362 RDL++L+ + I + D FP T H+E VLL Sbjct: 422 RDLALLAKKYRIRYMQPVDMFPQTAHVETVVLL 454 >gi|315172186|gb|EFU16203.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX1346] Length = 504 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 46/155 (29%), Positives = 78/155 (50%), Gaps = 15/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G L LA+ +V +E+ + +V+ A N N++ N FT Sbjct: 359 VVDAYCGIGTIGLTLAQDAKQVYGIEVIEEAVKDAENNAKLNNIENAT--------FTAG 410 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330 + E L + + + + VDPPR GLD V +++ P I+Y+SCNP +L R Sbjct: 411 LAEE----LLPKLVENGLQPDVVVVDPPRKGLDGQLVNTLIETQPERIVYVSCNPATLAR 466 Query: 331 DLSILS-TTHTIERLALFDQFPYTRHMECGVLLVR 364 D+++L+ + + + D FP T H+E LL + Sbjct: 467 DIALLTEGGYEAKEIQPVDNFPQTTHIESVTLLTK 501 >gi|46907934|ref|YP_014323.1| RNA methyltransferase [Listeria monocytogenes serotype 4b str. F2365] gi|47094248|ref|ZP_00231958.1| RNA methyltransferase, TrmA family [Listeria monocytogenes str. 4b H7858] gi|226224306|ref|YP_002758413.1| similar to RNA methyltransferase [Listeria monocytogenes Clip81459] gi|254932851|ref|ZP_05266210.1| RNA methyltransferase [Listeria monocytogenes HPB2262] gi|255520198|ref|ZP_05387435.1| hypothetical protein LmonocFSL_03022 [Listeria monocytogenes FSL J1-175] gi|51316674|sp|Q71YW4|Y1727_LISMF RecName: Full=Uncharacterized RNA methyltransferase LMOf2365_1727 gi|46881203|gb|AAT04500.1| RNA methyltransferase, TrmA family [Listeria monocytogenes serotype 4b str. F2365] gi|47017376|gb|EAL08199.1| RNA methyltransferase, TrmA family [Listeria monocytogenes str. 4b H7858] gi|225876768|emb|CAS05477.1| Putative similar to RNA methyltransferase [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|293584405|gb|EFF96437.1| RNA methyltransferase [Listeria monocytogenes HPB2262] gi|328466462|gb|EGF37605.1| RNA methyltransferase [Listeria monocytogenes 1816] gi|332312145|gb|EGJ25240.1| hypothetical protein LMOSA_26260 [Listeria monocytogenes str. Scott A] Length = 459 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 47/153 (30%), Positives = 73/153 (47%), Gaps = 16/153 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L++ YCG G A V ++I S+E A+ N N + NV + + Sbjct: 315 LVDAYCGVGTIGQAFAGKVKEVRGMDIIPESIEDAKRNAEKNGIENV---------YYEV 365 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM---VQAYPHILYISCNPDSLC 329 + E + + +R + VDPPRSG D + V+A ++Y+SCNP +L Sbjct: 366 GKAEDVLPKWVN---EGFRPDAVIVDPPRSGCDQGLIKSLLDVEAK-QLVYVSCNPSTLA 421 Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362 RDL++L+ + I + D FP T H+E VLL Sbjct: 422 RDLALLAKKYRIRYMQPVDMFPQTAHVETVVLL 454 >gi|288817344|ref|YP_003431691.1| RNA methyltransferase [Hydrogenobacter thermophilus TK-6] gi|288786743|dbj|BAI68490.1| RNA methyltransferase [Hydrogenobacter thermophilus TK-6] gi|308750951|gb|ADO44434.1| RNA methyltransferase, TrmA family [Hydrogenobacter thermophilus TK-6] Length = 420 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 82/326 (25%), Positives = 154/326 (47%), Gaps = 46/326 (14%) Query: 43 YRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRA 102 YR R +F + + F T E ++ID LL++ M +++ +++ Sbjct: 123 YRTRVQFKVSNGSLGF----FAWGTHELVKIDQ----CLLVHPAMNDLIPSLQELSKKIP 174 Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162 L ++ L S S+ + + + DA E +L++ + +K ++G N +K+ Sbjct: 175 HLQELHVLYSPSEDEFLLKVITPTIYDA--EKLRKLKENVLPKK----VVGIGNYSKLG- 227 Query: 163 DRDYVDERLTVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGDLL 214 D++ +R + GR+ + Q++N SF Q N + +L V+ K ++ Sbjct: 228 --DHLLKRYHI-GRSFTFMQVKNYRYRVSNDSFFQINFTLWEDLLNSVVVRDKR---RVI 281 Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274 EL+CG G FS+ L+ V++ + +++ A+YN N +N+ S+ + + Sbjct: 282 ELHCGAGFFSIPLSEGNHFVISSDTNATAIKDAQYNAKLNSRDNIVFFHESAHQTLKKHA 341 Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYP-HILYISCNPDSLCRDL 332 E ID+ +F+DPPR GL + +V Q P I+Y+SCNP +L RDL Sbjct: 342 GE-------TIDL-------LFLDPPRGGLTTDELSLVLQNKPKEIVYVSCNPTTLARDL 387 Query: 333 S-ILSTTHTIERLALFDQFPYTRHME 357 ++ ++++ + L D FP T H+E Sbjct: 388 GKMVRGGYSLKSVRLIDNFPQTYHIE 413 >gi|257420988|ref|ZP_05597978.1| RNA methyltransferase [Enterococcus faecalis X98] gi|257162812|gb|EEU92772.1| RNA methyltransferase [Enterococcus faecalis X98] Length = 457 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 46/155 (29%), Positives = 79/155 (50%), Gaps = 15/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G L LA+ +V +E+ + +V+ A NN K+ + + FT Sbjct: 312 VVDAYCGIGTIGLTLAQDAKQVYGIEVIEEAVKDAE--------NNAKLNNIENATFTAG 363 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330 + E L + + + + VDPPR GLD V +++ P I+Y+SCNP +L R Sbjct: 364 LAEE----LLPKLVENGLQPDVVVVDPPRKGLDGQLVNTLIETQPERIVYVSCNPATLAR 419 Query: 331 DLSILS-TTHTIERLALFDQFPYTRHMECGVLLVR 364 D+++L+ + + + D FP T H+E LL + Sbjct: 420 DIALLTEGGYEAKEIQPVDNFPQTTHIESVTLLTK 454 >gi|256957402|ref|ZP_05561573.1| RNA methyltransferase [Enterococcus faecalis DS5] gi|256964435|ref|ZP_05568606.1| RNA methyltransferase [Enterococcus faecalis HIP11704] gi|257077602|ref|ZP_05571963.1| RNA methyltransferase [Enterococcus faecalis JH1] gi|294779933|ref|ZP_06745314.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis PC1.1] gi|256947898|gb|EEU64530.1| RNA methyltransferase [Enterococcus faecalis DS5] gi|256954931|gb|EEU71563.1| RNA methyltransferase [Enterococcus faecalis HIP11704] gi|256985632|gb|EEU72934.1| RNA methyltransferase [Enterococcus faecalis JH1] gi|294452982|gb|EFG21403.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis PC1.1] Length = 457 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 46/155 (29%), Positives = 79/155 (50%), Gaps = 15/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G L LA+ +V +E+ + +V+ A NN K+ + + FT Sbjct: 312 VVDAYCGIGTIGLTLAQDAKQVYGIEVIEEAVKDAE--------NNAKLNNIENATFTAG 363 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330 + E L + + + + VDPPR GLD V +++ P I+Y+SCNP +L R Sbjct: 364 LAEE----LLPKLVENGLQPDVVVVDPPRKGLDGQLVNTLIETQPERIVYVSCNPATLAR 419 Query: 331 DLSILS-TTHTIERLALFDQFPYTRHMECGVLLVR 364 D+++L+ + + + D FP T H+E LL + Sbjct: 420 DIALLTEGGYEAKEIQPVDNFPQTTHIESVTLLTK 454 >gi|229546565|ref|ZP_04435290.1| TrmA family tRNA (uracil-5-)-methyltransferase [Enterococcus faecalis TX1322] gi|307274683|ref|ZP_07555855.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX2134] gi|307284510|ref|ZP_07564672.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX0860] gi|307296382|ref|ZP_07576206.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX0411] gi|229308310|gb|EEN74297.1| TrmA family tRNA (uracil-5-)-methyltransferase [Enterococcus faecalis TX1322] gi|306496037|gb|EFM65622.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX0411] gi|306503187|gb|EFM72441.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX0860] gi|306508612|gb|EFM77710.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX2134] gi|315029097|gb|EFT41029.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX4000] Length = 504 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 46/155 (29%), Positives = 78/155 (50%), Gaps = 15/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G L LA+ +V +E+ + +V+ A N N++ N FT Sbjct: 359 VVDAYCGIGTIGLTLAQDAKQVYGIEVIEEAVKDAENNAKLNNIENAT--------FTAG 410 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330 + E L + + + + VDPPR GLD V +++ P I+Y+SCNP +L R Sbjct: 411 LAEE----LLPKLVENGLQPDVVVVDPPRKGLDGQLVNTLIETQPERIVYVSCNPATLAR 466 Query: 331 DLSILS-TTHTIERLALFDQFPYTRHMECGVLLVR 364 D+++L+ + + + D FP T H+E LL + Sbjct: 467 DIALLTEGGYEAKEIQPVDNFPQTTHIESVTLLTK 501 >gi|227517694|ref|ZP_03947743.1| TrmA family tRNA (uracil-5-)-methyltransferase [Enterococcus faecalis TX0104] gi|227074849|gb|EEI12812.1| TrmA family tRNA (uracil-5-)-methyltransferase [Enterococcus faecalis TX0104] Length = 504 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 46/155 (29%), Positives = 79/155 (50%), Gaps = 15/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G L LA+ +V +E+ + +V+ A NN K+ + + FT Sbjct: 359 VVDAYCGIGTIGLTLAQDAKQVYGIEVIEEAVKDAE--------NNAKLNNIENATFTAG 410 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330 + E L + + + + VDPPR GLD V +++ P I+Y+SCNP +L R Sbjct: 411 LAEE----LLPKLVENGLQPDVVVVDPPRKGLDGQLVNTLIETQPERIVYVSCNPATLAR 466 Query: 331 DLSILS-TTHTIERLALFDQFPYTRHMECGVLLVR 364 D+++L+ + + + D FP T H+E LL + Sbjct: 467 DIALLTEGGYEAKEIQPVDNFPQTTHIESVTLLTK 501 >gi|330719374|ref|ZP_08313974.1| 23S rRNA (uracil-5-)-methyltransferase [Leuconostoc fallax KCTC 3537] Length = 460 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 61/189 (32%), Positives = 91/189 (48%), Gaps = 25/189 (13%) Query: 185 NSFTQPNAGINVHMLE--WVLAATKG---IQGDLLELYCGNGNFSLVLARHFDRVLAVEI 239 NSF Q +N M E + LAA K +++ Y G G + +A +VL VE+ Sbjct: 284 NSFYQ----VNPIMTEKLYTLAAQKAQLKPTDIVIDAYSGIGTIGISVANKVKQVLGVEV 339 Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299 +V A+ N+ NH++N + + E A+ +E+ + IFVDP Sbjct: 340 VAGAVADAQLNVDTNHIDNATFLLNDAPE-QMALWQEQ-----------GIKPDVIFVDP 387 Query: 300 PRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLS-ILSTTHTIER-LALFDQFPYTRH 355 PR GL + + V A +YISCNP +L RD + IL+ + IE + DQFP T H Sbjct: 388 PRRGLTKSLIDSVADMAPKRFVYISCNPVTLVRDTAEILTKGYHIEGDVQTVDQFPQTSH 447 Query: 356 MECGVLLVR 364 +E V+ R Sbjct: 448 IETIVVFTR 456 >gi|255971187|ref|ZP_05421773.1| RNA methyltransferase [Enterococcus faecalis T1] gi|255973811|ref|ZP_05424397.1| RNA methyltransferase [Enterococcus faecalis T2] gi|257083655|ref|ZP_05578016.1| RNA methyltransferase [Enterococcus faecalis Fly1] gi|255962205|gb|EET94681.1| RNA methyltransferase [Enterococcus faecalis T1] gi|255966683|gb|EET97305.1| RNA methyltransferase [Enterococcus faecalis T2] gi|256991685|gb|EEU78987.1| RNA methyltransferase [Enterococcus faecalis Fly1] gi|323479924|gb|ADX79363.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis 62] Length = 457 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 46/155 (29%), Positives = 79/155 (50%), Gaps = 15/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G L LA+ +V +E+ + +V+ A NN K+ + + FT Sbjct: 312 VVDAYCGIGTIGLTLAQDAKQVYGIEVIEEAVKDAE--------NNAKLNNIENATFTAG 363 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330 + E L + + + + VDPPR GLD V +++ P I+Y+SCNP +L R Sbjct: 364 LAEE----LLPKLVENGLQPDVVVVDPPRKGLDGQLVNTLIETQPERIVYVSCNPATLAR 419 Query: 331 DLSILS-TTHTIERLALFDQFPYTRHMECGVLLVR 364 D+++L+ + + + D FP T H+E LL + Sbjct: 420 DIALLTEGGYEAKEIQPVDNFPQTTHIESVTLLTK 454 >gi|254853619|ref|ZP_05242967.1| RNA methyltransferase [Listeria monocytogenes FSL R2-503] gi|258606994|gb|EEW19602.1| RNA methyltransferase [Listeria monocytogenes FSL R2-503] Length = 459 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 47/153 (30%), Positives = 73/153 (47%), Gaps = 16/153 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L++ YCG G A V ++I S+E A+ N N + NV + + Sbjct: 315 LVDAYCGVGTIGQAFAGKVKEVRGMDIIPESIEDAKRNAEKNGIENV---------YYEV 365 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM---VQAYPHILYISCNPDSLC 329 + E + + +R + VDPPRSG D + V+A ++Y+SCNP +L Sbjct: 366 GKAEDVLPKWVN---EGFRPDAVIVDPPRSGCDQGLIKSLLDVEAK-QLVYVSCNPSTLA 421 Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362 RDL++L+ + I + D FP T H+E VLL Sbjct: 422 RDLALLAKKYRIRYMQPVDMFPQTAHVETVVLL 454 >gi|228937613|ref|ZP_04100251.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228977069|ref|ZP_04137472.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis Bt407] gi|228782686|gb|EEM30861.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis Bt407] gi|228822094|gb|EEM68084.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 454 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 46/149 (30%), Positives = 77/149 (51%), Gaps = 15/149 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G+ SL LA+ +V VEI ++E A N N++ N + ++ Sbjct: 311 VIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRNAELNNMTNAEFGVGEAEVVIPK 370 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330 +E + D T+ VDPPR G D+A + ++ P+ ++Y+SCNP +L R Sbjct: 371 WYKE---GVIAD---------TMVVDPPRKGCDEALLNTIIDMKPNRVVYVSCNPATLAR 418 Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMEC 358 DL +L + + + D FP+T H+EC Sbjct: 419 DLKVLEEGGYKTQEVQPVDMFPHTTHVEC 447 >gi|326938107|gb|AEA14003.1| tRNA (Uracil-5-) -methyltransferase [Bacillus thuringiensis serovar chinensis CT-43] Length = 458 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 46/149 (30%), Positives = 77/149 (51%), Gaps = 15/149 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G+ SL LA+ +V VEI ++E A N N++ N + ++ Sbjct: 315 VIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRNAELNNMTNAEFGVGEAEVVIPK 374 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330 +E + D T+ VDPPR G D+A + ++ P+ ++Y+SCNP +L R Sbjct: 375 WYKE---GVIAD---------TMVVDPPRKGCDEALLNTIIDMKPNRVVYVSCNPATLAR 422 Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMEC 358 DL +L + + + D FP+T H+EC Sbjct: 423 DLKVLEEGGYKTQEVQPVDMFPHTTHVEC 451 >gi|315170705|gb|EFU14722.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX1342] Length = 468 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 46/155 (29%), Positives = 79/155 (50%), Gaps = 15/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G L LA+ +V +E+ + +V+ A NN K+ + + FT Sbjct: 323 VVDAYCGIGTIGLTLAQDAKQVYGIEVIEEAVKDAE--------NNAKLNNIENATFTAG 374 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330 + E L + + + + VDPPR GLD V +++ P I+Y+SCNP +L R Sbjct: 375 LAEE----LLPKLVENGLQPDVVVVDPPRKGLDGQLVNTLIETQPERIVYVSCNPATLAR 430 Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364 D+++L+ + + + D FP T H+E LL + Sbjct: 431 DIALLTEGGYEAKEIQPVDNFPQTTHIESVTLLTK 465 >gi|307245126|ref|ZP_07527219.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307254082|ref|ZP_07535929.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307258537|ref|ZP_07540274.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306854015|gb|EFM86227.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306863007|gb|EFM94954.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306867441|gb|EFM99292.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 442 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 55/185 (29%), Positives = 88/185 (47%), Gaps = 23/185 (12%) Query: 187 FTQPNAGINVHM----LEWV-LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241 F Q N +N M LEW+ L+A Q +L+L+CG GNF+L +A+ V+ VE + Sbjct: 274 FIQVNGDLNEKMVDKALEWLDLSA----QDRVLDLFCGMGNFTLPIAKQAGFVVGVEGVE 329 Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301 P V A+ N + + NV + + E D S F + +DP R Sbjct: 330 PMVAQAKQNRDTSGLKNVAFYQTNLDE------------PFADKPWASEPFNKVLLDPAR 377 Query: 302 SGLDDATVGMVQAYPH-ILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHMECG 359 +G + P I+Y+SCNP +L RD ++ + +++ A+ D FP+T H+E Sbjct: 378 NGAFFCLDHLAALNPGTIVYVSCNPATLVRDAEKLIQAGYKLQKAAMIDMFPHTGHLESL 437 Query: 360 VLLVR 364 L + Sbjct: 438 SLFTK 442 >gi|228970500|ref|ZP_04131151.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228789232|gb|EEM37160.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis serovar thuringiensis str. T01001] Length = 465 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 46/149 (30%), Positives = 77/149 (51%), Gaps = 15/149 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G+ SL LA+ +V VEI ++E A N N++ N + ++ Sbjct: 322 VIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRNAELNNMTNAEFGVGEAEVVIPK 381 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330 +E + D T+ VDPPR G D+A + ++ P+ ++Y+SCNP +L R Sbjct: 382 WYKE---GVIAD---------TMVVDPPRKGCDEALLNTIIDMKPNRVVYVSCNPATLAR 429 Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMEC 358 DL +L + + + D FP+T H+EC Sbjct: 430 DLKVLEEGGYKTQEVQPVDMFPHTTHVEC 458 >gi|261367933|ref|ZP_05980816.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Subdoligranulum variabile DSM 15176] gi|282570747|gb|EFB76282.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Subdoligranulum variabile DSM 15176] Length = 381 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 48/156 (30%), Positives = 78/156 (50%), Gaps = 15/156 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G L A +VL +E +V A N N V N + + E+ + Sbjct: 236 VVDAYCGIGTIGLCAASSSGQVLGIERNPAAVRDAIANARRNGVRNARFTCADATEWMEQ 295 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCR 330 R+ +H +F+DPPR+G A +G V A ++Y+SC+P++L R Sbjct: 296 AARQ---------ALHP---DVVFLDPPRAGSTPACIGAVARMAPQRVVYVSCDPETLAR 343 Query: 331 DLSILS-TTHTIERLALFDQFPYTRHMECGVLLVRK 365 D+++ S + +R D FP+TRH+E VLL R+ Sbjct: 344 DVALFSQKGYRAQRFVPVDLFPHTRHVETIVLLQRE 379 >gi|206896070|ref|YP_002247852.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Coprothermobacter proteolyticus DSM 5265] gi|206738687|gb|ACI17765.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Coprothermobacter proteolyticus DSM 5265] Length = 438 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 46/156 (29%), Positives = 82/156 (52%), Gaps = 18/156 (11%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + E Y G G F+L+ A+ V+A E + +V+ A N A N+V+NV+ + +E + Sbjct: 296 VFEGYSGVGAFTLLYAQKVKTVIAAEGVEEAVQQACKNAALNNVDNVQFLAKPVEEAAGS 355 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGL-DDATVGMVQAYPH-ILYISCNPDSLCR 330 +++ + + VDPPR+G+ +A + + P I+YISC+P +L R Sbjct: 356 LQQ---------------KINKVVVDPPRNGMTQEALNAVARLQPERIVYISCDPSTLAR 400 Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVRK 365 D+S +++ + D FP T H+EC LL+++ Sbjct: 401 DISRFQPFGYSLNHIQAIDMFPQTTHVECVALLIKE 436 >gi|165975769|ref|YP_001651362.1| 23S rRNA 5-methyluridine methyltransferase [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|165875870|gb|ABY68918.1| 23S rRNA (Uracil-5-)-methyltransferase [Actinobacillus pleuropneumoniae serovar 3 str. JL03] Length = 442 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 55/185 (29%), Positives = 88/185 (47%), Gaps = 23/185 (12%) Query: 187 FTQPNAGINVHM----LEWV-LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241 F Q N +N M LEW+ L+A Q +L+L+CG GNF+L +A+ V+ VE + Sbjct: 274 FIQVNGDLNEKMVDKALEWLDLSA----QDRVLDLFCGMGNFTLPIAKQAGFVVGVEGVE 329 Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301 P V A+ N + + NV + + E D S F + +DP R Sbjct: 330 PMVAQAKQNRDTSGLKNVAFYQTNLDE------------PFADKPWASEPFNKVLLDPAR 377 Query: 302 SGLDDATVGMVQAYPH-ILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHMECG 359 +G + P I+Y+SCNP +L RD ++ + +++ A+ D FP+T H+E Sbjct: 378 NGAFFCLDHLAALNPGTIVYVSCNPATLVRDAEKLIQAGYKLQKAAMIDMFPHTGHLESI 437 Query: 360 VLLVR 364 L + Sbjct: 438 SLFTK 442 >gi|257876913|ref|ZP_05656566.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus casseliflavus EC20] gi|257811079|gb|EEV39899.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus casseliflavus EC20] Length = 474 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 50/157 (31%), Positives = 75/157 (47%), Gaps = 17/157 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK-IVRMSSKEFTQ 271 +++ Y G G + LA VL +E+ +V A+ N N V NV + + K Q Sbjct: 331 VVDAYAGIGTIGISLADRVKEVLGMEVIPEAVNDAKANAKRNGVENVHYFIGKAEKIMPQ 390 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLC 329 +R + +FVDPPR GLD + + A I+YISCNP +L Sbjct: 391 WLR-------------EGIQPTVVFVDPPRKGLDASFIETTAAVKPERIVYISCNPATLA 437 Query: 330 RDLSILSTT-HTIERLALFDQFPYTRHMECGVLLVRK 365 RDL++ + + + + D FP T H+EC VLL R+ Sbjct: 438 RDLALFAEEGYVTKEVQPVDLFPQTTHVECVVLLERR 474 >gi|313158329|gb|EFR57731.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Alistipes sp. HGB5] Length = 469 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 49/156 (31%), Positives = 78/156 (50%), Gaps = 15/156 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L +LY G G + A RV+ VE ++ A+ N N + N K+ Sbjct: 326 LYDLYTGTGTIANFCAARCSRVVGVEYVPEAIADAKVNSQINGIGNTVFYAGDMKQV--- 382 Query: 273 MRREREFNRLKDIDIHSY-RFKTIFVDPPRSGLDDATVGMV-QAYPH-ILYISCNPDSLC 329 L D + + R I +DPPR+G+D+ +G++ +A P I+Y+SCNP + Sbjct: 383 ---------LSDGFVAANGRPDVIILDPPRAGVDEPVIGVILRAAPRRIVYVSCNPATQA 433 Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 RDL++L + +E + D FP+T H+E V LVR+ Sbjct: 434 RDLALLDADYRVEAVQPVDMFPHTHHVENVVKLVRR 469 >gi|229542669|ref|ZP_04431729.1| RNA methyltransferase, TrmA family [Bacillus coagulans 36D1] gi|229327089|gb|EEN92764.1| RNA methyltransferase, TrmA family [Bacillus coagulans 36D1] Length = 457 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 49/150 (32%), Positives = 78/150 (52%), Gaps = 17/150 (11%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G SL LA+ +V VEI ++E A+ N A N + NV+ +++ Sbjct: 313 VIDAYCGIGTISLFLAQKARKVFGVEIVPEAIEDAKRNAALNGITNVEFEAGTAE---TV 369 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYPH-ILYISCNPDSLCR 330 + + E D+ + VDPPR G D+A + + + P ++Y+SCNP +L R Sbjct: 370 IPKWYEAGNKADV---------LVVDPPRKGCDEALLKTILEMKPQKVVYVSCNPATLAR 420 Query: 331 DLSILSTT--HTIERLALFDQFPYTRHMEC 358 DL L T T+E + D FP+T H+E Sbjct: 421 DLRFLETGGYRTVE-VQPVDMFPHTTHVEV 449 >gi|299537400|ref|ZP_07050696.1| putative RNA methyltransferase [Lysinibacillus fusiformis ZC1] gi|298727135|gb|EFI67714.1| putative RNA methyltransferase [Lysinibacillus fusiformis ZC1] Length = 459 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 87/385 (22%), Positives = 157/385 (40%), Gaps = 49/385 (12%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFR-------SEPIHYRMRAEFHIWHDGDDLYHIM 62 YE+QL EK D + Q + + P L+ +P HYR +++F + +G +Y + Sbjct: 93 YEKQLIEKRDIVIQALERYAKPLLETIEVRKTLGMDDPWHYRNKSQFQVRKEGKRVYAGL 152 Query: 63 FDQQTKERMRID-----------YFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLT 111 F + + + + I+ + ++ L I + L L+R + + T Sbjct: 153 FAEGSNKLLNINDCLVQHPITSKITVATRKILQKLNITIYDGRTLNGLVRTIVVRTGIRT 212 Query: 112 SQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERL 171 ++ V L+ R E R++ + Q I R + I + DE + Sbjct: 213 GETQ---VVLVTTRKEIPHLAELITRMKKIDPSIVSIAQNINREKTSLI-----FGDETV 264 Query: 172 TVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWVL-AATKGIQGDLLELYCGNGN 222 + G+ I+ ++ +F Q N VH+ + + AA + +++ YCG G Sbjct: 265 VLDGKETIHEELGELAFDLSARAFFQLNPTQTVHLYDEIKKAAALSGKETVVDAYCGVGT 324 Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282 L LA V +++ S++ AR N + + K +++ +E Sbjct: 325 IGLWLADKAKEVRGMDVIPESIQDARKNARNHGFKHTKYAVGTAESVLAKWCKE------ 378 Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYPH-ILYISCNPDSLCRDLSILSTTHT 340 + I VDPPR+GL + V + P +Y SCNP +L +DL L+ + Sbjct: 379 ------GFTPDVITVDPPRTGLAPEFIRTVLKLKPKRFVYTSCNPSTLAKDLQQLTKLYD 432 Query: 341 IERLALFDQFPYTRHMECGVLLVRK 365 +E + D F T +EC LV K Sbjct: 433 VEYIQPVDMFAQTAQVECVAKLVLK 457 >gi|315025773|gb|EFT37705.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX2137] Length = 504 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 46/155 (29%), Positives = 78/155 (50%), Gaps = 15/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G L LA+ +V +E+ + +V+ A N N++ N FT Sbjct: 359 VVDAYCGIGTIGLTLAQDAKQVYGIEVIEEAVKDAENNAKLNNIENAT--------FTAG 410 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330 + E L + + + + VDPPR GLD V +++ P I+Y+SCNP +L R Sbjct: 411 LAEE----LLPKLVENGLQPDVVVVDPPRKGLDGQLVNTLIETQPERIVYVSCNPATLAR 466 Query: 331 DLSILS-TTHTIERLALFDQFPYTRHMECGVLLVR 364 D+++L+ + + + D FP T H+E LL + Sbjct: 467 DIALLTEGGYEAKEIQPVDNFPQTTHIESVTLLTK 501 >gi|20808229|ref|NP_623400.1| SAM-dependent methyltransferase related to tRNA (uracil-5-)-methyltransferase [Thermoanaerobacter tengcongensis MB4] gi|50401766|sp|Q8R918|Y1812_THETN RecName: Full=Uncharacterized RNA methyltransferase TTE1812 gi|20516825|gb|AAM25004.1| SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Thermoanaerobacter tengcongensis MB4] Length = 452 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 53/156 (33%), Positives = 76/156 (48%), Gaps = 17/156 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 ++++Y G G SL A+ V +E K +VE A N N V NVK + + Sbjct: 309 VIDVYSGIGTISLFAAKKASFVYGIESVKEAVEDAEKNAQVNGVKNVKFIWGKA------ 362 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330 ERE +L + + + VDPPR G D + +V P I+Y+SCNP +L R Sbjct: 363 ---EREIAKLYK---EGVKAEVVIVDPPRDGCDKEVIRAIVGINPKRIVYVSCNPSTLAR 416 Query: 331 DLSIL--STTHTIERLALFDQFPYTRHMECGVLLVR 364 DL L + T+E + D FPYT H+E L+ R Sbjct: 417 DLRYLEDAGYRTVE-VQPVDMFPYTYHVESVALVER 451 >gi|312794361|ref|YP_004027284.1| RNA methyltransferase, TrmA family [Caldicellulosiruptor kristjanssonii 177R1B] gi|312181501|gb|ADQ41671.1| RNA methyltransferase, TrmA family [Caldicellulosiruptor kristjanssonii 177R1B] Length = 451 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 59/210 (28%), Positives = 103/210 (49%), Gaps = 24/210 (11%) Query: 168 DERLTVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYC 218 +E + + G + I +I N SF Q N+ + V+ K I +++ ++Y Sbjct: 252 EEDILIWGSSTIKDKIGNLTFEISPKSFFQVNSLQTEVLYSQVVKYLKDIDAEIVFDVYS 311 Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278 G G S+ +A +V A+EI + +VE A+ + N+++N++ + S+ E E Sbjct: 312 GIGTISMFVAPFCKKVYAIEIVEDAVEDAKKSSKNNNISNIEFICGSA---------EIE 362 Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL- 335 RL I + + +DPPR G + + + P+I+Y+SCNP +L RD +IL Sbjct: 363 IPRLMKSGIIP---QAVILDPPRRGCEKELLESLIEHKIPNIIYVSCNPSTLARDSNILC 419 Query: 336 STTHTIERLALFDQFPYTRHMECGVLLVRK 365 S + I + D FP T H+EC L ++ Sbjct: 420 SNGYEILEVQPVDMFPQTFHVECVALFKKR 449 >gi|229548674|ref|ZP_04437399.1| TrmA family tRNA (uracil-5-)-methyltransferase [Enterococcus faecalis ATCC 29200] gi|312953113|ref|ZP_07771962.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX0102] gi|229306190|gb|EEN72186.1| TrmA family tRNA (uracil-5-)-methyltransferase [Enterococcus faecalis ATCC 29200] gi|310628947|gb|EFQ12230.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX0102] gi|315146955|gb|EFT90971.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX4244] gi|315153976|gb|EFT97992.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX0031] gi|315156740|gb|EFU00757.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX0043] Length = 504 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 46/155 (29%), Positives = 79/155 (50%), Gaps = 15/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G L LA+ +V +E+ + +V+ A NN K+ + + FT Sbjct: 359 VVDAYCGIGTIGLTLAQDAKQVYGIEVIEEAVKDAE--------NNAKLNNIENATFTAG 410 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330 + E L + + + + VDPPR GLD V +++ P I+Y+SCNP +L R Sbjct: 411 LAEE----LLPKLVENGLQPDVVVVDPPRKGLDGQLVNTLIETQPERIVYVSCNPATLAR 466 Query: 331 DLSILS-TTHTIERLALFDQFPYTRHMECGVLLVR 364 D+++L+ + + + D FP T H+E LL + Sbjct: 467 DIALLTEGGYEAKEIQPVDNFPQTTHIESVTLLTK 501 >gi|212224662|ref|YP_002307898.1| 23S rRNA (uracil-5-)-methyltransferase [Thermococcus onnurineus NA1] gi|212009619|gb|ACJ17001.1| 23S rRNA (uracil-5-)-methyltransferase [Thermococcus onnurineus NA1] Length = 419 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 58/184 (31%), Positives = 93/184 (50%), Gaps = 24/184 (13%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSF Q N+ V+++ V +G + +L+LY G G F + LA+ V +EI +V Sbjct: 254 NSFFQTNSYQAVNLVREVSRLVEGEK--VLDLYSGVGTFGVYLAKRGFTVEGIEINPFAV 311 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY-RFKTIFVDPPRSG 303 E A N N ++ V F+ +D D+ + ++ TI +DPPR+G Sbjct: 312 EMANRNAELNGIDAV-------------------FSVGEDKDVKNLAKYDTIILDPPRAG 352 Query: 304 LDDATVG-MVQAYPH-ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVL 361 L V +++ P I+Y+SCNP +L +L+ LS +++E D FP+T H+E V Sbjct: 353 LHPKLVKKILKDEPQTIVYVSCNPKTLKLNLNELSGKYSVEEAVGLDMFPHTPHIEVVVK 412 Query: 362 LVRK 365 L K Sbjct: 413 LKHK 416 >gi|239638046|ref|ZP_04679005.1| 23S rRNA-methyltransferase RumA [Staphylococcus warneri L37603] gi|239596329|gb|EEQ78867.1| 23S rRNA-methyltransferase RumA [Staphylococcus warneri L37603] Length = 453 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 46/155 (29%), Positives = 72/155 (46%), Gaps = 14/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +L+ YCG G L +A + V VE+ +++ A+ N N N V ++E Sbjct: 311 VLDTYCGIGTIGLYMAENAKHVYGVEVVPSAIKDAKQNATINQFENTTFVCGKAEEVILE 370 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330 + E R + VDPPR G D+ + +++ P I+YISCNP + R Sbjct: 371 WKSE------------GIRPDVVMVDPPRKGCDETFLETILELNPKRIVYISCNPSTQQR 418 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 D ILS + ++ + D FP T H+E + RK Sbjct: 419 DAHILSRQYELKEITPVDMFPQTTHIETVAIFERK 453 >gi|307289579|ref|ZP_07569523.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX0109] gi|306499393|gb|EFM68766.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX0109] gi|315164578|gb|EFU08595.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX1302] Length = 504 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 46/155 (29%), Positives = 79/155 (50%), Gaps = 15/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G L LA+ +V +E+ + +V+ A NN K+ + + FT Sbjct: 359 VVDAYCGIGTIGLTLAQDAKQVYGIEVIEEAVKDAE--------NNAKLNNIENATFTAG 410 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330 + E L + + + + VDPPR GLD V +++ P I+Y+SCNP +L R Sbjct: 411 LAEE----LLPKLVENGLQPDVVVVDPPRKGLDGQLVNTLIETQPERIVYVSCNPATLAR 466 Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364 D+++L+ + + + D FP T H+E LL + Sbjct: 467 DIALLTEGGYEAKEIQPVDNFPQTTHIESVTLLTK 501 >gi|238019497|ref|ZP_04599923.1| hypothetical protein VEIDISOL_01366 [Veillonella dispar ATCC 17748] gi|237864196|gb|EEP65486.1| hypothetical protein VEIDISOL_01366 [Veillonella dispar ATCC 17748] Length = 495 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 93/390 (23%), Positives = 162/390 (41%), Gaps = 64/390 (16%) Query: 10 YEQQLAEKVDRLRQMM--LAFQVPNL---QIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 YE QL+ K +++ ++ + Q P+L + EP YR + + + Sbjct: 130 YEGQLSLKTQKVKDVIERIGHQNPDLVKPTLGPKEPWAYRNKMQMPVGG----------- 178 Query: 65 QQTKERMRIDYFMPGSLLI----NALMIEMMATIRLEPLLR-AKLFQIDYLTSQSDQAIV 119 TK +++ ++ GS I N + + I + + AK F I+ + + ++ Sbjct: 179 --TKGDIQMGFYAMGSHDIVQGTNCPIQDEGNNIIAQACYQIAKAFDIEPYDEHTGKGVL 236 Query: 120 TLIYHRLLDDAWRECAIRLRDAL-HARKYQIQLIGR------------ANKTKICLDRD- 165 I R+ W + + L H K+ +LI R +T + L Sbjct: 237 RHIIGRIGQSGWMIILVTATEQLPHKEKWVEKLIERIPQVETIVHNVNGKRTNVILGPKN 296 Query: 166 ---YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGN 220 Y D +T + L + +SF Q N + + LA ++GD +++ YCG Sbjct: 297 NILYGDGTITDHIKDLRFTLSPHSFFQVNPEQTTVLYDQALAYAD-LKGDETVIDAYCGT 355 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK-IVRMSSKEFTQAMRREREF 279 G SL LA V+ +EI +P++ AR N N +N + IV ++ E + + Sbjct: 356 GTISLFLAHKAKHVIGIEIVEPAIINARENAQRNGYDNTEFIVADAAVEMPKLYKA---- 411 Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDD----ATVGMVQAYPHILYISCNPDSLCRDLSIL 335 R I DP R+G + + GM I+Y+SCNP ++ RD+ IL Sbjct: 412 ---------GVRPDVIVFDPIRAGCKEEVLTSAAGMEPK--RIVYVSCNPATMARDIEIL 460 Query: 336 S-TTHTIERLALFDQFPYTRHMECGVLLVR 364 + + ++ + D FP T H+E LL R Sbjct: 461 THYGYELQEVQPVDMFPMTAHVEAVALLTR 490 >gi|312864433|ref|ZP_07724665.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus downei F0415] gi|311100035|gb|EFQ58247.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus downei F0415] Length = 450 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 93/388 (23%), Positives = 156/388 (40%), Gaps = 58/388 (14%) Query: 10 YEQQLAEKVDRLRQMMLAFQ---VPNLQIFRSE----PIHYRMRAEFHIWHDGDDLYHIM 62 Y++QL K D ++Q + FQ N +I ++ P HYR + +F H D + + Sbjct: 89 YKKQLDFKDDIIKQALKKFQPIGYENYEIRPTKGMDNPYHYRAKLQFQTRHFADSVKAGL 148 Query: 63 F----------------DQQTKE------RMRIDYFMPGSLLINALMIEMMATIRLEPLL 100 F D+ T+E + Y +P + N I + TI + Sbjct: 149 FASNSHRLVPLESCLVQDELTQEIVNKATELLDKYKIP---IYNERKIAGVRTIMVRKGQ 205 Query: 101 RAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKI 160 + QI ++TS+ + + RL AI + + Y KT+I Sbjct: 206 ASSQVQIIFVTSKDIRLTALIKELRLAFPQIVTIAINYNSSKSSEIY-------GEKTQI 258 Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAG-INVHMLEWVLAATKGIQGDLLELYCG 219 ++ ++E + +L R +F Q N V E V A DL++ YCG Sbjct: 259 LWGKETIEEEVLDYSFSLSPR----AFYQLNPQQTQVLYQEAVAALDAQPDDDLIDAYCG 314 Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279 G A V +++ S+E A+ N ++N +++ +E Sbjct: 315 VGTIGFAFANKVRSVRGMDVIPESIEDAKENAKTLGLSNTYYETGKAEDIIPKWYQE--- 371 Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCRDLSILST 337 YR + VDPPR GLDD + ++ P ++Y+SCN +L RDL LS Sbjct: 372 ---------GYRASALVVDPPRVGLDDKLLKTIIDVRPAKMVYVSCNASTLARDLVALSQ 422 Query: 338 THTIERLALFDQFPYTRHMECGVLLVRK 365 + ++ + D FP+T +E V L +K Sbjct: 423 VYQVDYIQSVDMFPHTARVEAVVKLRKK 450 >gi|262275255|ref|ZP_06053065.1| RNA methyltransferase TrmA family [Grimontia hollisae CIP 101886] gi|262220500|gb|EEY71815.1| RNA methyltransferase TrmA family [Grimontia hollisae CIP 101886] Length = 361 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 57/187 (30%), Positives = 85/187 (45%), Gaps = 25/187 (13%) Query: 185 NSFTQPNAGINVHML----EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240 SF Q N I + EWV + + +L+CG G F+L A V +EI Sbjct: 193 KSFFQTNPDIAAKLYATAREWV---KEIAPARMWDLFCGVGGFALHCAPVAGAVTGIEIE 249 Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300 ++ +A+ + A ++N+ + S F+ H + V+PP Sbjct: 250 PEAIASAKRSAAEIGISNLDFDALDSAAFSLC---------------HDTAPDLVLVNPP 294 Query: 301 RSGLDDATVG-MVQAYP-HILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMEC 358 R GL V + Q P HI+Y SCNPD+L DL + ++RL FD FP+TRH E Sbjct: 295 RRGLGQTLVTQLAQLSPKHIIYSSCNPDTLRSDLDGFDG-YAVKRLQWFDMFPHTRHAEV 353 Query: 359 GVLLVRK 365 VLL ++ Sbjct: 354 MVLLEKR 360 >gi|49484138|ref|YP_041362.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus MRSA252] gi|257426029|ref|ZP_05602451.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus subsp. aureus 55/2053] gi|257428702|ref|ZP_05605097.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus subsp. aureus 65-1322] gi|257431312|ref|ZP_05607688.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 68-397] gi|257436934|ref|ZP_05612976.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus subsp. aureus M876] gi|282904528|ref|ZP_06312413.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus subsp. aureus C160] gi|282906301|ref|ZP_06314153.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus subsp. aureus Btn1260] gi|282909217|ref|ZP_06317033.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus subsp. aureus WW2703/97] gi|282911522|ref|ZP_06319322.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus subsp. aureus WBG10049] gi|282914695|ref|ZP_06322480.1| RNA methyltransferase, TrmA family [Staphylococcus aureus subsp. aureus M899] gi|282919732|ref|ZP_06327464.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus subsp. aureus C427] gi|283958658|ref|ZP_06376104.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus subsp. aureus A017934/97] gi|293507772|ref|ZP_06667614.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus subsp. aureus 58-424] gi|293510789|ref|ZP_06669491.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus subsp. aureus M809] gi|293539329|ref|ZP_06672008.1| RNA methyltransferase, TrmA family [Staphylococcus aureus subsp. aureus M1015] gi|295428479|ref|ZP_06821106.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus subsp. aureus EMRSA16] gi|297590050|ref|ZP_06948690.1| 23S rRNA (uracil-5-)-methyltransferase [Staphylococcus aureus subsp. aureus MN8] gi|81650792|sp|Q6GFG0|Y1988_STAAR RecName: Full=Uncharacterized RNA methyltransferase SAR1988 gi|49242267|emb|CAG40974.1| putative RNA methyltransferase [Staphylococcus aureus subsp. aureus MRSA252] gi|257271172|gb|EEV03329.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus subsp. aureus 55/2053] gi|257274346|gb|EEV05858.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus subsp. aureus 65-1322] gi|257277961|gb|EEV08617.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 68-397] gi|257283723|gb|EEV13848.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus subsp. aureus M876] gi|282316370|gb|EFB46747.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus subsp. aureus C427] gi|282321409|gb|EFB51735.1| RNA methyltransferase, TrmA family [Staphylococcus aureus subsp. aureus M899] gi|282324531|gb|EFB54843.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus subsp. aureus WBG10049] gi|282326785|gb|EFB57082.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus subsp. aureus WW2703/97] gi|282330498|gb|EFB60015.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus subsp. aureus Btn1260] gi|282595084|gb|EFC00051.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus subsp. aureus C160] gi|283789698|gb|EFC28520.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus subsp. aureus A017934/97] gi|290919864|gb|EFD96933.1| RNA methyltransferase, TrmA family [Staphylococcus aureus subsp. aureus M1015] gi|291094835|gb|EFE25103.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus subsp. aureus 58-424] gi|291466420|gb|EFF08944.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus subsp. aureus M809] gi|295127461|gb|EFG57100.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus subsp. aureus EMRSA16] gi|297577178|gb|EFH95892.1| 23S rRNA (uracil-5-)-methyltransferase [Staphylococcus aureus subsp. aureus MN8] gi|312437637|gb|ADQ76708.1| 23S rRNA (uracil-5-)-methyltransferase [Staphylococcus aureus subsp. aureus TCH60] gi|315193426|gb|EFU23823.1| putative RNA methyltransferase [Staphylococcus aureus subsp. aureus CGS00] Length = 453 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 45/152 (29%), Positives = 70/152 (46%), Gaps = 14/152 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +L+ YCG G L +A H V VE+ ++E A+ N N NN V ++E Sbjct: 311 VLDTYCGIGTIGLYMAPHAKHVYGVEVVPSAIEDAQQNATINQCNNTTFVCGKAEEVILQ 370 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330 + + + + VDPPR G D+ + ++ P I+YISCNP + R Sbjct: 371 WKAQ------------GIKPDVVMVDPPRKGCDETFIQTLLTLEPKRIVYISCNPSTQQR 418 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLL 362 D +L+ + +E + D FP T H+E L Sbjct: 419 DALLLAEKYQLEEVTPVDMFPQTTHVETVALF 450 >gi|257868017|ref|ZP_05647670.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus casseliflavus EC30] gi|257874347|ref|ZP_05654000.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus casseliflavus EC10] gi|257802100|gb|EEV31003.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus casseliflavus EC30] gi|257808511|gb|EEV37333.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus casseliflavus EC10] Length = 474 Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 50/157 (31%), Positives = 74/157 (47%), Gaps = 17/157 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK-IVRMSSKEFTQ 271 +++ Y G G + LA VL +E+ +V A+ N N V NV + + K Q Sbjct: 331 VVDAYAGIGTIGISLADRVKEVLGMEVIPEAVNDAKANAKRNGVENVHYFIGKAEKIMPQ 390 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLC 329 +R + +FVDPPR GLD + + A I+YISCNP +L Sbjct: 391 WLR-------------EGIQPTVVFVDPPRKGLDASFIETTAAVKPERIVYISCNPATLA 437 Query: 330 RDLSILSTT-HTIERLALFDQFPYTRHMECGVLLVRK 365 RDL++ + + + D FP T H+EC VLL R+ Sbjct: 438 RDLALFEEEGYVTKEVQPVDLFPQTTHVECVVLLERR 474 >gi|319427232|gb|ADV55306.1| RNA methyltransferase, TrmA family [Shewanella putrefaciens 200] Length = 450 Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 54/186 (29%), Positives = 88/186 (47%), Gaps = 26/186 (13%) Query: 185 NSFTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240 +F Q N IN M ++W+ A +L+L+CG GNFSL LA+ V+ VE Sbjct: 279 GNFVQVNGQINKAMVAQAMDWLAPAP---DERILDLFCGMGNFSLPLAKMGAEVIGVEGV 335 Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY--RFKTIFVD 298 V AR N AN+++ + + D+ + + + + +D Sbjct: 336 AEMVSQARVNAKANNLDKLTFYHG---------------DLSADLSLEPWMGKIDKLLLD 380 Query: 299 PPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDLSI-LSTTHTIERLALFDQFPYTRHM 356 P R+G ++ + + P ++Y+SCNP SL RD ++ L + ++RL L D FP T H+ Sbjct: 381 PARAGAFESLQWLKKMKPRKVVYVSCNPASLARDSAVLLERGYRLQRLGLIDMFPQTHHI 440 Query: 357 ECGVLL 362 E L Sbjct: 441 EAMALF 446 >gi|226323498|ref|ZP_03799016.1| hypothetical protein COPCOM_01273 [Coprococcus comes ATCC 27758] gi|225208182|gb|EEG90536.1| hypothetical protein COPCOM_01273 [Coprococcus comes ATCC 27758] Length = 471 Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 57/184 (30%), Positives = 88/184 (47%), Gaps = 10/184 (5%) Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 SF Q N + +L G+ G + ++YCG G SL LA+ +V VEI + Sbjct: 289 SFYQVNP-VQTEVLYGTALEYAGLTGKETVWDVYCGIGTISLFLAQKAQKVYGVEIVPQA 347 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 +E A++N N + N + ++E E + K+ R I VDPPR G Sbjct: 348 IEDAKHNAEINEITNAEFFVGKAEEVLP----EYYADYAKEHPGEHARADVIVVDPPRKG 403 Query: 304 LDDATV-GMVQAYPH-ILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGV 360 + + + MVQ P I+Y+SC+ +L RD+ L + I ++ D FP + H+E V Sbjct: 404 CERSVLDTMVQMEPERIVYVSCDSATLARDVKYLRENGYEIRKVKATDMFPMSVHVETVV 463 Query: 361 LLVR 364 LL R Sbjct: 464 LLSR 467 >gi|89097040|ref|ZP_01169931.1| YefA [Bacillus sp. NRRL B-14911] gi|89088420|gb|EAR67530.1| YefA [Bacillus sp. NRRL B-14911] Length = 458 Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 45/148 (30%), Positives = 71/148 (47%), Gaps = 15/148 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G SL LA+ +V VEI ++E A+ N A N + N + +++ Sbjct: 313 VIDAYCGIGTISLFLAQKAKKVFGVEIVPEAIEDAKRNAALNGITNAEFAVGEAEKVIPD 372 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330 +E + + VDPPR G D+A + + + ++Y+SCNP +L R Sbjct: 373 WYKE------------GNQADVLVVDPPRKGCDEALLQTILSMKPKKVVYVSCNPATLAR 420 Query: 331 DLSILS-TTHTIERLALFDQFPYTRHME 357 DL IL + E + D FP T H E Sbjct: 421 DLRILEDGGYKTEEVQPVDMFPQTMHCE 448 >gi|325570600|ref|ZP_08146326.1| 23S rRNA (uracil-5-)-methyltransferase [Enterococcus casseliflavus ATCC 12755] gi|325156446|gb|EGC68626.1| 23S rRNA (uracil-5-)-methyltransferase [Enterococcus casseliflavus ATCC 12755] Length = 465 Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 50/156 (32%), Positives = 74/156 (47%), Gaps = 17/156 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK-IVRMSSKEFTQ 271 +++ Y G G + LA VL +E+ +V A+ N N V NV + + K Q Sbjct: 322 VVDAYAGIGTIGISLADRVKEVLGMEVIPEAVNDAKANAKRNGVENVHYFIGKAEKIMPQ 381 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLC 329 +R + +FVDPPR GLD + + A I+YISCNP +L Sbjct: 382 WLRE-------------GIQPTVVFVDPPRKGLDASFIETTAAVKPERIVYISCNPATLA 428 Query: 330 RDLSILSTT-HTIERLALFDQFPYTRHMECGVLLVR 364 RDL++ + + + + D FP T H+EC VLL R Sbjct: 429 RDLALFAEEGYVTKEVQPVDLFPQTTHVECVVLLER 464 >gi|269123350|ref|YP_003305927.1| RNA methyltransferase, TrmA family [Streptobacillus moniliformis DSM 12112] gi|268314676|gb|ACZ01050.1| RNA methyltransferase, TrmA family [Streptobacillus moniliformis DSM 12112] Length = 473 Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 44/156 (28%), Positives = 82/156 (52%), Gaps = 16/156 (10%) Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271 ++++ + G G ++++++ ++V+ +EI SV++A I ++ NN+K V + + Sbjct: 311 NVIDAFSGTGTIAMIMSKKANKVIGLEIVPESVKSA---IKTSNENNIKNVEFLVGKVEE 367 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLC 329 + R E N + I DPPR G+D + + V ++YISC+P +L Sbjct: 368 TISRVLENNNI----------DYIVFDPPRKGIDKSILEKVNESGINKLVYISCDPTTLA 417 Query: 330 RDLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364 RD+ +L + +E + FD FP T H+E VLL + Sbjct: 418 RDIGVLKEYGYKLEFIKGFDMFPQTHHIETVVLLSK 453 >gi|254977015|ref|ZP_05273487.1| putative RNA methyltransferase [Clostridium difficile QCD-66c26] gi|255651934|ref|ZP_05398836.1| putative RNA methyltransferase [Clostridium difficile QCD-37x79] gi|306521684|ref|ZP_07408031.1| putative RNA methyltransferase [Clostridium difficile QCD-32g58] Length = 544 Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 47/156 (30%), Positives = 79/156 (50%), Gaps = 17/156 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + ++YCG G SL LA+ +V +EI +++ A+ N N+++N + ++E Sbjct: 309 VFDIYCGIGTISLFLAQKAKKVYGIEIIDDAIKDAKINAKLNNIHNAEFYVGKAEEIVPK 368 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330 M RE + + + VDPPR G D+ + +V P I+Y+SCNP +L R Sbjct: 369 MYREGKTANV------------VVVDPPRKGCDEKVLETIVSMNPERIVYVSCNPSTLAR 416 Query: 331 DLSILSTTHTIERLAL--FDQFPYTRHMECGVLLVR 364 DL L+ H + + D FP++ H+E LL + Sbjct: 417 DLDYLN-VHGFKCVEAQPVDMFPHSTHVETVALLSK 451 >gi|328473948|gb|EGF44764.1| RNA methyltransferase [Listeria monocytogenes 220] Length = 458 Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 47/153 (30%), Positives = 73/153 (47%), Gaps = 16/153 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L++ YCG G A V ++I S+E A+ N N + NV + + Sbjct: 314 LVDAYCGVGTIGQAFAGKVKEVRGMDIIPESIEDAKRNAEKNGIENV---------YYEV 364 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM---VQAYPHILYISCNPDSLC 329 + E + + +R + VDPPRSG D + V+A ++Y+SCNP +L Sbjct: 365 GKAEDVLPKWVN---EGFRPDAVIVDPPRSGCDQGLIKSLLDVEAK-QLVYVSCNPSTLA 420 Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362 RDL++L+ + I + D FP T H+E VLL Sbjct: 421 RDLALLAKKYRIRYMQPVDMFPQTAHVETVVLL 453 >gi|309389700|gb|ADO77580.1| (Uracil-5)-methyltransferase [Halanaerobium praevalens DSM 2228] Length = 389 Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 46/153 (30%), Positives = 73/153 (47%), Gaps = 18/153 (11%) Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274 +LYCG G + +A D++ +EI K + A N N+V N K + ++ Sbjct: 249 DLYCGAGTIAQSIAAGADQIYGIEIDKNAANQASENADLNNVKNTKYLA------GDVLK 302 Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDL 332 + E + D+ + +DPPR G++ + + P ILYISCNP SL DL Sbjct: 303 KINEIEKAADL---------LIIDPPRPGINPKALKKIAKIGAPEILYISCNPKSLAIDL 353 Query: 333 SILST-THTIERLALFDQFPYTRHMECGVLLVR 364 L + +E+ D FP+T+H+E LL + Sbjct: 354 KELENYNYKLEKFKAVDMFPHTKHVEMISLLKK 386 >gi|291545409|emb|CBL18517.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Ruminococcus sp. SR1/5] Length = 390 Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 54/191 (28%), Positives = 94/191 (49%), Gaps = 20/191 (10%) Query: 178 LIYRQIENSFTQPNAGINVHML---EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRV 234 L +R +SF Q N + +L AA G + +++ YCG G ++ + + V Sbjct: 204 LTFRISPSSFYQVNP-VQTEVLYGKAMEFAAMTGKE-RVIDAYCGTGTIGIIASGNARDV 261 Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294 + VE+ + ++ AR N N + NV+ V + F + M E E + + Sbjct: 262 IGVELNRDAIRDARMNARENKIRNVRFVPGDAGWFMEGMAAEGE------------KVEV 309 Query: 295 IFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCRDLSILST-THTIERLALFDQFP 351 + +DPPRSG D + ++ P I+Y+SCNP++L RDL+ L+ + ++++ D FP Sbjct: 310 VLMDPPRSGSDRKFLHSLLTLSPEKIVYVSCNPETLARDLACLTKRDYLVKKMQPVDMFP 369 Query: 352 YTRHMECGVLL 362 T +E LL Sbjct: 370 LTDSVEVVCLL 380 >gi|253689752|ref|YP_003018942.1| RNA methyltransferase, TrmA family [Pectobacterium carotovorum subsp. carotovorum PC1] gi|259495631|sp|C6DDJ9|RUMA_PECCP RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|251756330|gb|ACT14406.1| RNA methyltransferase, TrmA family [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 449 Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 59/195 (30%), Positives = 91/195 (46%), Gaps = 19/195 (9%) Query: 173 VAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNFSLVLARHF 231 VAG TL + F Q N +N M+ LA Q +L+L+CG GNF+L LA+ Sbjct: 262 VAGLTLAFS--PRDFIQVNDAVNQQMVAQALAWLDVQPQDRILDLFCGMGNFTLPLAQRA 319 Query: 232 DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNRLKDIDIHSY 290 V+ VE VE R N N ++NV + + TQ + F++ Sbjct: 320 ASVVGVEGVTALVEKGRENARRNALSNVTFFHQNLEDDVTQQPWVAQGFDK--------- 370 Query: 291 RFKTIFVDPPRSGLDDATVGMVQAYPH-ILYISCNPDSLCRDLSI-LSTTHTIERLALFD 348 I +DP R+G + + P ++Y+SCN +L RD + L+ T+ +A+ D Sbjct: 371 ----ILLDPARAGAAGVMEQITRLAPKRVVYVSCNATTLARDSKVLLAAGFTLVNVAMLD 426 Query: 349 QFPYTRHMECGVLLV 363 FP+T H+E L + Sbjct: 427 MFPHTGHLESMALFL 441 >gi|313837106|gb|EFS74820.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA [Propionibacterium acnes HL037PA2] gi|314927868|gb|EFS91699.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA [Propionibacterium acnes HL044PA1] gi|328907328|gb|EGG27094.1| deoxyribonuclease/rho motif-related TRAM [Propionibacterium sp. P08] Length = 393 Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 61/202 (30%), Positives = 92/202 (45%), Gaps = 24/202 (11%) Query: 168 DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLV 226 DE +T ++ F Q + G + + V+ K QGD L+LYCG G F+ + Sbjct: 211 DETMTAHVGQRRWKVGAGGFWQVHPGAAEALADAVVGGLKPHQGDEALDLYCGVGLFAGL 270 Query: 227 LARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDID 286 LA RV +E+++ +V AR N+ H FT A R ER R+ Sbjct: 271 LADRGVRVRGIEVSRQAVALARRNVPGGH-------------FT-AGRVERALPRM---- 312 Query: 287 IHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCRDLSILSTTHTIER- 343 S + + +DPPR G A V + + P I +++C+P +L RDL + R Sbjct: 313 --SAKANIVVLDPPRKGAGKAVVQAVARTSPRAIAHVACDPAALARDLHLFDVNGYAPRS 370 Query: 344 LALFDQFPYTRHMECGVLLVRK 365 + FD FP T H+E +L K Sbjct: 371 IRAFDVFPMTHHVEAVAILEPK 392 >gi|226328919|ref|ZP_03804437.1| hypothetical protein PROPEN_02821 [Proteus penneri ATCC 35198] gi|225202105|gb|EEG84459.1| hypothetical protein PROPEN_02821 [Proteus penneri ATCC 35198] Length = 441 Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 54/186 (29%), Positives = 87/186 (46%), Gaps = 23/186 (12%) Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 F Q N IN M +EW+ + + +L+L+CG GNF+L +A+ V+ +E Sbjct: 272 FIQVNDEINSQMVAQAIEWLDLSP---EDRVLDLFCGMGNFTLPIAKRVSEVVGIEGVPA 328 Query: 243 SVEAARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301 VE A+ N N + N S +F+ + FN+ + +DP R Sbjct: 329 LVEMAKKNAKLNQLGNAHFWHADLSADFSAMSWSKEGFNK-------------VLLDPAR 375 Query: 302 SGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSI-LSTTHTIERLALFDQFPYTRHMECG 359 +G + +V+ + I+Y+SCNP +L RD I L + + + L + D FP T H+E Sbjct: 376 AGALEVMSHIVKLSAEKIVYVSCNPTTLARDSKILLDSGYQLTGLKMLDMFPQTGHLESM 435 Query: 360 VLLVRK 365 RK Sbjct: 436 AQFSRK 441 >gi|325687169|gb|EGD29191.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis SK72] Length = 464 Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 50/155 (32%), Positives = 77/155 (49%), Gaps = 15/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +L+ Y G G L +A+H V VE+ +VE ++ N A N + N V ++E Q Sbjct: 321 VLDAYSGIGTIGLSVAKHVKAVYGVEVIPEAVENSQKNAAVNGITNASYVCAPAEEAIQ- 379 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCR 330 N LK+ + I VDPPR GL ++ + V P I YISCN ++ R Sbjct: 380 -------NWLKE----GIQADVILVDPPRKGLTESFIKASVSMEPKKITYISCNVATMAR 428 Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364 D+ + + ++++ D FP T H+EC LLV+ Sbjct: 429 DIKLYRELGYELKKVQPVDLFPQTHHVECVALLVK 463 >gi|251778308|ref|ZP_04821228.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243082623|gb|EES48513.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 455 Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 49/157 (31%), Positives = 78/157 (49%), Gaps = 17/157 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + + YCG G +L L++ +V VEI + ++ A+ N N+V+NV EF Sbjct: 312 VFDAYCGTGTITLFLSQKAKKVYGVEIIESAIINAKENAKLNNVDNV--------EFFVG 363 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA---TVGMVQAYPHILYISCNPDSLC 329 E N + D + + VDPPR G D +G V+ ++Y+SC+P +L Sbjct: 364 KSEEVIPNLIND----GIKADIVVVDPPRKGCDVKLLEAIGEVKP-KKVVYVSCDPSTLA 418 Query: 330 RDLSILS-TTHTIERLALFDQFPYTRHMECGVLLVRK 365 RDL IL+ + + + D FP T H+E V L++K Sbjct: 419 RDLKILNEKGYKVVEIQPVDMFPQTSHIENVVKLIKK 455 >gi|190149586|ref|YP_001968111.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|303249528|ref|ZP_07335735.1| 23S rRNA 5-methyluridine methyltransferase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307251846|ref|ZP_07533747.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307262906|ref|ZP_07544530.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|189914717|gb|ACE60969.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|302651602|gb|EFL81751.1| 23S rRNA 5-methyluridine methyltransferase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306860538|gb|EFM92550.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306871811|gb|EFN03531.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 442 Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 55/185 (29%), Positives = 88/185 (47%), Gaps = 23/185 (12%) Query: 187 FTQPNAGINVHM----LEWV-LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241 F Q N +N M LEW+ L+A Q +L+L+CG GNF+L +A+ V+ VE + Sbjct: 274 FIQVNGDLNEKMVDKALEWLDLSA----QDRVLDLFCGMGNFTLPIAKQAGFVVGVEGVE 329 Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301 P V A+ N + + NV + + E D S F + +DP R Sbjct: 330 PMVAQAKQNRDTSGLKNVAFYQTNLDE------------PFADKPWASEPFNKVLLDPAR 377 Query: 302 SGLDDATVGMVQAYPH-ILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHMECG 359 +G + P I+Y+SCNP +L RD ++ + +++ A+ D FP+T H+E Sbjct: 378 NGAFFCLDHLAALNPGTIVYVSCNPATLVRDAEKLIQAGYKLQKAAMIDMFPHTGHLESI 437 Query: 360 VLLVR 364 L + Sbjct: 438 SLFTK 442 >gi|314971879|gb|EFT15977.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA [Propionibacterium acnes HL037PA3] Length = 393 Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 61/202 (30%), Positives = 92/202 (45%), Gaps = 24/202 (11%) Query: 168 DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLV 226 DE +T ++ F Q + G + + V+ K QGD L+LYCG G F+ + Sbjct: 211 DETMTAHVGQRRWKVGAGGFWQVHPGAAEALADAVVGGLKPHQGDEALDLYCGVGLFAGL 270 Query: 227 LARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDID 286 LA RV +E+++ +V AR N+ H FT A R ER R+ Sbjct: 271 LADRGVRVRGIEVSRQAVALARRNVPGGH-------------FT-AGRVERALPRM---- 312 Query: 287 IHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCRDLSILSTTHTIER- 343 S + + +DPPR G A V + + P I +++C+P +L RDL + R Sbjct: 313 --SAKANIVVLDPPRKGAGKAVVQAVARTSPRAIAHVACDPAALARDLHLFDVNGYAPRS 370 Query: 344 LALFDQFPYTRHMECGVLLVRK 365 + FD FP T H+E +L K Sbjct: 371 IRAFDVFPMTHHVEAVAILEPK 392 >gi|256959863|ref|ZP_05564034.1| RNA methyltransferase [Enterococcus faecalis Merz96] gi|256950359|gb|EEU66991.1| RNA methyltransferase [Enterococcus faecalis Merz96] Length = 457 Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 46/155 (29%), Positives = 79/155 (50%), Gaps = 15/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G L LA+ +V +E+ + +V+ A NN K+ + + FT Sbjct: 312 VVDAYCGIGTIGLTLAQDAKQVYGIEVIEEAVKDAE--------NNAKLNNIENATFTAG 363 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330 + E L + + + + VDPPR GLD V +++ P I+Y+SCNP +L R Sbjct: 364 LAEE----LLPKLVENGLQPDVVVVDPPRKGLDGQLVNTLIETQPKRIVYVSCNPATLAR 419 Query: 331 DLSILS-TTHTIERLALFDQFPYTRHMECGVLLVR 364 D+++L+ + + + D FP T H+E LL + Sbjct: 420 DIALLTEGGYEAKEIQPVDNFPQTTHIESVTLLTK 454 >gi|319776825|ref|YP_004136476.1| tRNA (uracil-5-)-methyltransferase related enzyme [Mycoplasma fermentans M64] gi|318037900|gb|ADV34099.1| tRNA (Uracil-5-)-methyltransferase related enzyme [Mycoplasma fermentans M64] Length = 438 Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 51/155 (32%), Positives = 79/155 (50%), Gaps = 19/155 (12%) Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271 ++++ Y G G SL +A +V +EI K +V A+ N N++NN EF + Sbjct: 296 NVVDAYSGIGTISLKIAEKVKKVYGLEIVKEAVINAKQNAKLNNINNT--------EFYE 347 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLC 329 + LK ID + TI +DPPR+G+ + +++ P I YISCNP +LC Sbjct: 348 G-------DVLKTIDNIKEKIDTIIIDPPRAGVSKEVLEKILKIEPKQIGYISCNPHTLC 400 Query: 330 RDLSI--LSTTHTIERLALFDQFPYTRHMECGVLL 362 RD+ + LS + +E L D F T H+E +L Sbjct: 401 RDIDLLTLSKKYKLEFLKPCDMFCQTHHVETVAIL 435 >gi|253576638|ref|ZP_04853966.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Paenibacillus sp. oral taxon 786 str. D14] gi|251844052|gb|EES72072.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Paenibacillus sp. oral taxon 786 str. D14] Length = 483 Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 63/209 (30%), Positives = 98/209 (46%), Gaps = 22/209 (10%) Query: 155 ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-- 212 N+T+I D + E L TL R +F Q N V + E V AA G+ G Sbjct: 283 GNRTEILWGADSIQESLGDLEFTLSPR----AFFQLNPLQTVKLYESVRAAA-GLTGKET 337 Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G L LA + V +E +VE A+ N A N +N + ++E Sbjct: 338 VVDAYCGTGTIGLWLAPYAKEVRGIESIPEAVEDAKANAARNGRDNAQFYTGYAEEL--- 394 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330 + R + D+ I DPPR+GLD + +++ P +Y+SCNP +L + Sbjct: 395 LPRWVKSGFAPDV---------IVADPPRTGLDPRFLEAVLKTKPKRFVYVSCNPSTLAK 445 Query: 331 DL-SILSTTHTIERLALFDQFPYTRHMEC 358 D ++L + +E + D FP T H+EC Sbjct: 446 DCKALLDGGYALEWVQPVDMFPQTSHVEC 474 >gi|238809600|dbj|BAH69390.1| hypothetical protein [Mycoplasma fermentans PG18] Length = 441 Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 51/155 (32%), Positives = 79/155 (50%), Gaps = 19/155 (12%) Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271 ++++ Y G G SL +A +V +EI K +V A+ N N++NN EF + Sbjct: 299 NVVDAYSGIGTISLKIAEKVKKVYGLEIVKEAVINAKQNAKLNNINNT--------EFYE 350 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLC 329 + LK ID + TI +DPPR+G+ + +++ P I YISCNP +LC Sbjct: 351 G-------DVLKTIDNIKEKIDTIIIDPPRAGVSKEVLEKILKIEPKQIGYISCNPHTLC 403 Query: 330 RDLSI--LSTTHTIERLALFDQFPYTRHMECGVLL 362 RD+ + LS + +E L D F T H+E +L Sbjct: 404 RDIDLLTLSKKYKLEFLKPCDMFCQTHHVETVAIL 438 >gi|1723813|sp|P55136|RUMA_PHOAS RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|537618|gb|AAA62209.1| unknown [Vibrio sp.] Length = 220 Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 59/181 (32%), Positives = 87/181 (48%), Gaps = 15/181 (8%) Query: 187 FTQPNAGINVHMLEWVLAATK-GIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 F Q N +NV M+E + Q +L+L+CG GNFSL LAR V+ VE V Sbjct: 41 FIQVNRDVNVKMVEQAINWLDIQPQDRVLDLFCGLGNFSLPLARRAKAVVGVEGVDEMVA 100 Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD 305 A N AAN ++N + + E + +E +F I +DP R+G Sbjct: 101 RATANAAANGLDNATFYQANLDEDVTKLVWAQE------------QFDKILLDPARAGAA 148 Query: 306 DATVGMVQAYP-HILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVLLV 363 +V P ++Y+SCNP +L RD +L + + RL + D FP+T H+E L V Sbjct: 149 GVMQHIVNLAPSKVVYVSCNPATLARDSQMLLQQGYKLARLGMMDMFPHTGHLESMTLFV 208 Query: 364 R 364 + Sbjct: 209 K 209 >gi|119358501|ref|YP_913145.1| RNA methyltransferase [Chlorobium phaeobacteroides DSM 266] gi|119355850|gb|ABL66721.1| 23S rRNA m(5)U-1939 methyltransferase [Chlorobium phaeobacteroides DSM 266] Length = 476 Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 62/205 (30%), Positives = 98/205 (47%), Gaps = 28/205 (13%) Query: 168 DERLTVAGRTLIYRQI--------ENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYC 218 +E VAG I ++ NSF Q N+ V + + +L GD + +L+C Sbjct: 277 EEEFLVAGDGFITERLGKLDFNISANSFFQTNSAQTVLLYDEILRVAGLDIGDTVYDLFC 336 Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAAN---HVNNVKIVRMSSKEFTQAMRR 275 G G +L L+ + +V+ +E+++ SV AR N A N HV +++ + A++R Sbjct: 337 GTGTIALYLSDYCRQVIGLEVSESSVADARKNAALNQREHVLFMQVDLNDHRAMVDALQR 396 Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGL-DDATVGMVQAYPH-ILYISCNPDSLCRDLS 333 + + I DPPR+G+ A MV+ P I+Y+SCNP SL RD S Sbjct: 397 HD-------------KPRVIVTDPPRAGMHPKALEVMVRIAPEKIVYVSCNPASLARDGS 443 Query: 334 -ILSTTHTIERLALFDQFPYTRHME 357 I + + L D FP+T H+E Sbjct: 444 EICKGGYRLTSLQPVDMFPHTSHIE 468 >gi|293385052|ref|ZP_06630886.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis R712] gi|293389323|ref|ZP_06633784.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis S613] gi|312906041|ref|ZP_07765054.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis DAPTO 512] gi|312909387|ref|ZP_07768243.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis DAPTO 516] gi|291077730|gb|EFE15094.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis R712] gi|291081345|gb|EFE18308.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis S613] gi|310628036|gb|EFQ11319.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis DAPTO 512] gi|311290411|gb|EFQ68967.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis DAPTO 516] Length = 504 Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 46/155 (29%), Positives = 79/155 (50%), Gaps = 15/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G L LA+ +V +E+ + +V+ A NN K+ + + FT Sbjct: 359 VVDAYCGIGTIGLTLAQDAKQVYGIEVIEEAVKDAE--------NNAKLNNIENATFTAG 410 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330 + E L + + + + VDPPR GLD V +++ P I+Y+SCNP +L R Sbjct: 411 LAEE----LLPKLVENGLQPDVVVVDPPRKGLDGQLVNTLIETQPKRIVYVSCNPATLAR 466 Query: 331 DLSILS-TTHTIERLALFDQFPYTRHMECGVLLVR 364 D+++L+ + + + D FP T H+E LL + Sbjct: 467 DIALLTEGGYEAKEIQPVDNFPQTTHIESVTLLTK 501 >gi|149180724|ref|ZP_01859227.1| YefA [Bacillus sp. SG-1] gi|148851514|gb|EDL65661.1| YefA [Bacillus sp. SG-1] Length = 457 Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 55/158 (34%), Positives = 79/158 (50%), Gaps = 17/158 (10%) Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271 ++++ YCG G SL LA+ +V VEI ++E A+ N N N EF + Sbjct: 313 NVIDAYCGIGTISLFLAQKAKKVYGVEIVPQAIEDAKKNAELNGFTNT--------EF-E 363 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYP-HILYISCNPDSLC 329 A E R D I + + VDPPR G D+A + + + P ++Y+SCNP +L Sbjct: 364 AGPAEVVIPRWYDEGI---KADVLVVDPPRKGCDEALLNTILEMKPRKVVYVSCNPATLA 420 Query: 330 RDLSILSTT--HTIERLALFDQFPYTRHMECGVLLVRK 365 RDL +L T+E + D FP T H+EC LV K Sbjct: 421 RDLQVLEDGGYRTLE-VQPVDMFPQTMHVECVAQLVLK 457 >gi|194335110|ref|YP_002016970.1| RNA methyltransferase, TrmA family [Prosthecochloris aestuarii DSM 271] gi|194312928|gb|ACF47323.1| RNA methyltransferase, TrmA family [Prosthecochloris aestuarii DSM 271] Length = 478 Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 69/249 (27%), Positives = 115/249 (46%), Gaps = 23/249 (9%) Query: 118 IVTLIYHRLLDDAWRECAIRLRDALHARKYQI--QLIGRANKTKICLDRDYV---DERLT 172 IVT Y R L +A+R+ L + + R+ I + R N +++YV D L Sbjct: 235 IVTSWYDRELMEAYRD---HLLERMKGRRMTIVNNVTTRKNTVSTG-EKEYVVYGDGTLR 290 Query: 173 VAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFSLVLARHF 231 L +R NSF Q N + E ++ Q D++ +LYCG G +L LA Sbjct: 291 ERLGDLHFRISANSFFQTNTRQAEALYEGIMRMAGLKQDDVVYDLYCGTGTITLYLAERC 350 Query: 232 DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291 + + +E+ + S+ A N AN + N ++ K+F + ++ Sbjct: 351 RQAVGLEVVESSIIDAAENAGANGIENAAFYQVDLKDFHTLVPTLEQYGMP--------- 401 Query: 292 FKTIFVDPPRSGL-DDATVGMVQAYPH-ILYISCNPDSLCRD-LSILSTTHTIERLALFD 348 + I DPPR+G+ A +++ P I+Y+SCNP +L RD I+ + +E + D Sbjct: 402 -RVIVTDPPRAGMHPKALETLLRLQPETIVYVSCNPANLARDGKEIVQQGYRLEEVQPVD 460 Query: 349 QFPYTRHME 357 FP+T H+E Sbjct: 461 MFPHTSHVE 469 >gi|315157726|gb|EFU01743.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX0312] Length = 504 Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 46/155 (29%), Positives = 77/155 (49%), Gaps = 15/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G L LA+ +V +E+ + +V+ A N N++ N FT Sbjct: 359 VVDAYCGIGTIGLTLAQDAKQVYGIEVIEEAVKDAENNAKLNNIENAT--------FTAG 410 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330 + E L + + + VDPPR GLD V +++ P I+Y+SCNP +L R Sbjct: 411 LAEE----LLPKLVEKGLQPDVVVVDPPRKGLDGQLVNTLIETQPERIVYVSCNPATLAR 466 Query: 331 DLSILS-TTHTIERLALFDQFPYTRHMECGVLLVR 364 D+++L+ + + + D FP T H+E LL + Sbjct: 467 DIALLTEGGYEAKEIQPVDNFPQTTHIESVTLLTK 501 >gi|255020470|ref|ZP_05292535.1| 23S rRNA (uracil-5-) -methyltransferase rumA [Acidithiobacillus caldus ATCC 51756] gi|254970080|gb|EET27577.1| 23S rRNA (uracil-5-) -methyltransferase rumA [Acidithiobacillus caldus ATCC 51756] Length = 440 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 55/182 (30%), Positives = 86/182 (47%), Gaps = 14/182 (7%) Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 F Q N IN ++ +A G+ +++L+CG GNF+L +AR R L VE V Sbjct: 270 GFIQVNPWINPVLVRRAMALLAPEPGEEIVDLFCGLGNFTLPMARLGARALGVEGDTRLV 329 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AR+N N + + + TQ L D+ + + + +DPPRSG Sbjct: 330 AQARFNAELNGL--AARAHFIAADLTQTA--------LADLP-GAAGVRKMLIDPPRSGA 378 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHT--IERLALFDQFPYTRHMECGVLL 362 + G+ A ++Y+SCNPD+L RD + L +E + + FP+T H+E L Sbjct: 379 IEILKGIGPALRRLVYVSCNPDTLARDSAYLVQQQGFRLEAAGIVNMFPHTAHVESVALF 438 Query: 363 VR 364 R Sbjct: 439 TR 440 >gi|332361995|gb|EGJ39797.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis SK49] Length = 466 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 51/156 (32%), Positives = 78/156 (50%), Gaps = 15/156 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +L+ Y G G L +A+ +V VE+ +VE ++ N A N + N V ++E Q Sbjct: 321 VLDAYSGIGTIGLSVAKQVKQVYGVEVIPEAVENSQKNAAINGITNASYVCAPAEEAIQ- 379 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCR 330 N LK+ + I VDPPR GL ++ + V P I YISCN ++ R Sbjct: 380 -------NWLKE----GIQADVILVDPPRKGLTESFIKASVSMEPKKITYISCNVATMAR 428 Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVRK 365 D+ + + ++++ D FP T H+EC VLL RK Sbjct: 429 DIKLYQELGYELKKVQPVDLFPQTHHVECVVLLQRK 464 >gi|189424927|ref|YP_001952104.1| RNA methyltransferase, TrmA family [Geobacter lovleyi SZ] gi|189421186|gb|ACD95584.1| RNA methyltransferase, TrmA family [Geobacter lovleyi SZ] Length = 485 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 54/163 (33%), Positives = 83/163 (50%), Gaps = 17/163 (10%) Query: 208 GIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265 G+ G +L+LYCG G +L LA +VL VE+ K +V A+ N +NN + R Sbjct: 330 GLDGSQQVLDLYCGIGGIALTLAPVARQVLGVELNKEAVADAKRNA---RLNNARNCRFE 386 Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISC 323 + + + + D+ RF I ++PPR G D + V + I+Y+SC Sbjct: 387 AGDVLELL---------DDLLEDELRFSCIVLNPPRKGCDREVLDKVAEFAPERIVYVSC 437 Query: 324 NPDSLCRDLSILSTTH-TIERLALFDQFPYTRHMECGVLLVRK 365 +P +L RDL IL+T E++ + FP T H+E LL+RK Sbjct: 438 SPQTLARDLDILATKGFHCEKVQPVEMFPQTPHVENVALLLRK 480 >gi|238917056|ref|YP_002930573.1| hypothetical protein EUBELI_01126 [Eubacterium eligens ATCC 27750] gi|238872416|gb|ACR72126.1| Hypothetical protein EUBELI_01126 [Eubacterium eligens ATCC 27750] Length = 389 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 46/156 (29%), Positives = 80/156 (51%), Gaps = 16/156 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G +V ++ +V+ VE+ +V A+ N + N++ NV V + +F Sbjct: 246 VIDAYCGIGTIGIVASKKAGKVIGVELNSEAVSDAKINASINNIKNVTFVNADAGDFLV- 304 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCR 330 E+ + D+ + +DPPRSG + +++ P I+YISC PD+ R Sbjct: 305 -----EYAKNAKADV-------VIMDPPRSGSTPEFLNSLLKIKPDRIVYISCGPDTQAR 352 Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRK 365 D+ +L + + FD FP+T H+E +LL RK Sbjct: 353 DIKVLIKGGYKVTACQPFDLFPHTEHVENVILLSRK 388 >gi|227889470|ref|ZP_04007275.1| TrmA family tRNA (uracil-5-)-methyltransferase [Lactobacillus johnsonii ATCC 33200] gi|227849948|gb|EEJ60034.1| TrmA family tRNA (uracil-5-)-methyltransferase [Lactobacillus johnsonii ATCC 33200] Length = 450 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 48/153 (31%), Positives = 72/153 (47%), Gaps = 15/153 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ Y G G L +A+H V +E+ KP+VE A N N + N + V ++E Sbjct: 305 VIDAYSGIGTIGLSVAKHVKAVRGMEVIKPAVEDANANAKLNGITNAEYVVGKAEEVMPR 364 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCR 330 +E R IFVDPPR GL + V+ P I+YISCNP ++ R Sbjct: 365 WAKE------------GLRTDVIFVDPPRKGLTLEFIDAAVETNPKKIVYISCNPATMVR 412 Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLL 362 DL + + + + D FP T H+E +L Sbjct: 413 DLQLFKEQGYDFDEIDPVDMFPQTPHVESVTVL 445 >gi|282892425|ref|ZP_06300775.1| hypothetical protein pah_c253o052 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281497827|gb|EFB40188.1| hypothetical protein pah_c253o052 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 484 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 52/153 (33%), Positives = 81/153 (52%), Gaps = 13/153 (8%) Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274 +LYCG G S+ L++ V+ VEI +V AR N A N +NV + + E + Sbjct: 339 DLYCGTGTLSICLSKFAKTVVGVEICPEAVLDARSNAAKNGCSNVHFLCGAVHEQLTKII 398 Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDD-ATVGMVQAYP-HILYISCNPDSLCRDL 332 E F L D+ + VDPPR+GLD A +++ P ILY+SCNP + ++ Sbjct: 399 EENLFP-LPDL---------VVVDPPRAGLDPHALQHLIKLSPKKILYVSCNPLTQVDNI 448 Query: 333 S-ILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 S ++S + +E + DQFP+T H+E +L + Sbjct: 449 SNLISQGYRLEAMQPVDQFPHTIHIENIAVLTK 481 >gi|42519575|ref|NP_965505.1| hypothetical protein LJ1698 [Lactobacillus johnsonii NCC 533] gi|51316712|sp|Q74I68|Y1698_LACJO RecName: Full=Uncharacterized RNA methyltransferase LJ_1698 gi|41583864|gb|AAS09471.1| hypothetical protein LJ_1698 [Lactobacillus johnsonii NCC 533] Length = 450 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 47/155 (30%), Positives = 73/155 (47%), Gaps = 15/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ Y G G L +A+H V +E+ +P+VE A N N + N + V ++E Sbjct: 305 VIDAYSGIGTIGLSVAKHVKAVRGMEVIEPAVEDANANAKLNGITNAEYVVGKAEEVMPR 364 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCR 330 +E + IFVDPPR GL + V+ P I+YISCNP ++ R Sbjct: 365 WAKE------------GLKTDVIFVDPPRKGLTPEFIDAAVETNPKKIVYISCNPATMVR 412 Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364 DL + + + + D FP T H+E +L R Sbjct: 413 DLQLFKEQGYDFDEIDPVDMFPQTPHVEAVAVLER 447 >gi|310779073|ref|YP_003967406.1| 23S rRNA m(5)U-1939 methyltransferase [Ilyobacter polytropus DSM 2926] gi|309748396|gb|ADO83058.1| 23S rRNA m(5)U-1939 methyltransferase [Ilyobacter polytropus DSM 2926] Length = 453 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 84/372 (22%), Positives = 159/372 (42%), Gaps = 37/372 (9%) Query: 9 QYEQQLAEKVDRLRQMMLAF-QVPNLQIF----RSEPIHYRMRA-EFHIWHDGDDLYHIM 62 +YE QL K + + ++ ++ N +I+ + P +YR + E + DG + Sbjct: 89 KYESQLKYKKEMVEDVLKKIGKLENFEIYDTIGSTSPKYYRNKVIEPFAYKDGK-IISGF 147 Query: 63 FDQQTKERMRIDYFMPGSLLINALMIEMMATIRL-------EPLLRAKLFQIDYLTSQSD 115 F +++ E + M S L N + E+ + E R L + T+ D Sbjct: 148 FKKKSHEVFEVSENMLQSKLANRITKELKEILNKKRIPVYDEKKHRGILRHVMVRTNSFD 207 Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANK-TKICL-DRD---YVDER 170 +A+V L+ ++ LRD + + I NK T + L D D Y DE Sbjct: 208 EAMVVLVVKGEPAKNLKKILYDLRD--RCPEVKAAYISVNNKRTNVALGDEDIYVYGDEV 265 Query: 171 LTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLAR 229 L + + SF Q N + E ++ ++ ++++ Y G G +++L+R Sbjct: 266 LKEELFDIKFNISPKSFFQINLEQTKKLYETAISYFDDVKNKNIVDAYSGTGTIAMILSR 325 Query: 230 HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHS 289 +V A+E+ K + A+ N + N+ + + + + ++RE Sbjct: 326 WAKKVFAIEMVKSATLDAKKTSMENKIKNIDFINGKVEGKLEELLKKRE----------- 374 Query: 290 YRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST-THTIERLAL 346 + I DPPR G++++ + V I+YISCNP + RD ++L+ + + ++ Sbjct: 375 -KIDAIIFDPPRKGIEESVLHSVAKTGINEIVYISCNPSTFARDANVLNEIGYDLLKVQP 433 Query: 347 FDQFPYTRHMEC 358 D FP T H+E Sbjct: 434 VDMFPQTSHIEV 445 >gi|212638138|ref|YP_002314658.1| methyltransferase [Anoxybacillus flavithermus WK1] gi|212559618|gb|ACJ32673.1| Methyltransferase [Anoxybacillus flavithermus WK1] Length = 456 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 50/154 (32%), Positives = 77/154 (50%), Gaps = 17/154 (11%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G SL LA++ +V VE+ ++E A+ N N + NV+ + E Sbjct: 311 VIDAYCGIGTISLFLAKNAKKVYGVEVVPEAIEDAKRNAELNGMTNVEFA-VGEAEVVIP 369 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330 E+ + I VDPPR G D++ + + A ++Y+SCNP +L R Sbjct: 370 KWYEQ-----------GVKADCIVVDPPRKGCDESLLQTIIAMKPKRVVYVSCNPATLAR 418 Query: 331 DLSIL--STTHTIERLALFDQFPYTRHMECGVLL 362 DL IL T+E + D FP+T H+EC V L Sbjct: 419 DLRILEDGGYKTLE-VQPVDMFPHTVHVECVVKL 451 >gi|50556488|ref|XP_505652.1| YALI0F20196p [Yarrowia lipolytica] gi|49651522|emb|CAG78461.1| YALI0F20196p [Yarrowia lipolytica] Length = 566 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 47/150 (31%), Positives = 79/150 (52%), Gaps = 18/150 (12%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L++ YCG+G FS+ ++ ++V VEI+ SV+ AR N N +NN + ++ Sbjct: 380 LVDAYCGSGLFSITCSQAVEKVYGVEISDESVKFARKNAELNKINNAVFLTGKAE----- 434 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330 N KD+D + + +DPPR G D+A + +V P ++Y+SCN + R Sbjct: 435 -------NIFKDLDCDPAQ-TCMIIDPPRKGTDEAFINQLVTFQPQRLVYVSCNVHTQAR 486 Query: 331 DLSIL---STTHTIERLALFDQFPYTRHME 357 D++ L + +E + FD FP T+H+E Sbjct: 487 DVAYLLKQCPEYKVESIRGFDFFPQTKHVE 516 >gi|289422275|ref|ZP_06424129.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Peptostreptococcus anaerobius 653-L] gi|289157326|gb|EFD05937.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Peptostreptococcus anaerobius 653-L] Length = 454 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 48/162 (29%), Positives = 84/162 (51%), Gaps = 16/162 (9%) Query: 210 QGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268 +GD + ++YCG G+ SL LA+ + V VEI + +++ A N N ++N++ ++E Sbjct: 305 EGDRVFDVYCGIGSISLFLAQKAEFVYGVEIVEDAIKDAMINAKLNGMDNLEFFVGKAEE 364 Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPD 326 + ++ R + VDPPR G D+ + +V+ P ++Y+SCNP Sbjct: 365 VVPEIYKQ------------GKRANVVVVDPPRKGCDEKVLDTIVEMEPERVVYVSCNPS 412 Query: 327 SLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVRKPS 367 +L RDL L + E++ D F ++ H+EC L+ R S Sbjct: 413 TLARDLRYLEDRGYRCEKVQPVDLFAHSVHVECIALIQRVKS 454 >gi|213025876|ref|ZP_03340323.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 64 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 37/64 (57%), Positives = 47/64 (73%) Query: 91 MATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQ 150 MA +R LR KLFQIDYLT+ S+QA+V+L+YH+ LD+ WRE A LRDAL A+ + Sbjct: 1 MAGVRDNHALRHKLFQIDYLTTLSNQAVVSLLYHKKLDEEWREAATALRDALRAQGLNVH 60 Query: 151 LIGR 154 LIGR Sbjct: 61 LIGR 64 >gi|328946582|gb|EGG40721.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis SK1087] Length = 465 Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 50/156 (32%), Positives = 78/156 (50%), Gaps = 15/156 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +L+ Y G G L +A+H V VE+ +VE ++ N A N + N V ++E Q Sbjct: 321 VLDAYSGIGTIGLSVAKHVKAVYGVEVIPEAVENSQKNAAVNGITNASYVCAPAEEAIQ- 379 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCR 330 N LK+ + I VDPPR GL ++ + V P I YISCN ++ R Sbjct: 380 -------NWLKE----GIQADVILVDPPRKGLTESFIKASVSMEPKKITYISCNVATMAR 428 Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRK 365 D+ + + ++++ D FP T H+EC LLV++ Sbjct: 429 DIKLYRELGYELKKVQPVDLFPQTHHVECVSLLVKR 464 >gi|282889691|ref|ZP_06298230.1| hypothetical protein pah_c004o034 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281500265|gb|EFB42545.1| hypothetical protein pah_c004o034 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 449 Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 70/263 (26%), Positives = 119/263 (45%), Gaps = 33/263 (12%) Query: 113 QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLT 172 Q+ +++V L+ + + + A ++ A K IQ I R + + L D+ T Sbjct: 205 QTSESLVILVTSQEKCTSLQALAQQIMQACPEVKGVIQNINR-KRDNVILGTDW----HT 259 Query: 173 VAGRTLIYRQI--------ENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNF 223 +AG++ I I ++F Q N + + VL+ A L+ +CG G Sbjct: 260 LAGKSYIREMICDHHFHISPSAFFQVNPAQAESIYQHVLSLADLDKTKTFLDAFCGVGTM 319 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 +L+ A + +E ++E A N N ++N E + LK Sbjct: 320 TLIAAGQAKECIGIECVPQAIEDANANAQLNQISNAVFY---------CDHAESKIQSLK 370 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQ-AYPH-ILYISCNPDSLCRDLSIL-STTHT 340 DID+ +F++PPR G +++ + ++ P ILY+SC+P +L RDL IL + Sbjct: 371 DIDV-------VFLNPPRKGCEESLLNRLKIVKPETILYMSCDPATLARDLKILVQHGYQ 423 Query: 341 IERLALFDQFPYTRHMECGVLLV 363 IE++ FD FP T H+E V L Sbjct: 424 IEQVTPFDMFPQTAHVETVVKLT 446 >gi|238920414|ref|YP_002933929.1| 23S rRNA methyluridine methyltransferase [Edwardsiella ictaluri 93-146] gi|238869983|gb|ACR69694.1| 23S rRNA (uracil-5-)-methyltransferase RumB, putative [Edwardsiella ictaluri 93-146] Length = 377 Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 57/186 (30%), Positives = 86/186 (46%), Gaps = 25/186 (13%) Query: 185 NSFTQPNAGIN----VHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240 SF Q N + +WV A G+ ++ +L+CG G F L A + +EI+ Sbjct: 208 QSFFQTNPAVAQALYAQARDWVQAL--GVT-EMWDLFCGVGGFGLHCATPEMTLTGIEIS 264 Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300 ++ AR + A + V + S F D HS + + V+PP Sbjct: 265 AGAIACARRSAAQLGLTKVSFAALDSGAFA---------------DAHSAVPQLVLVNPP 309 Query: 301 RSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMEC 358 R G+ A + A P+ILY SCN S+ +D+ L+ + IE++ LFD FP+T H E Sbjct: 310 RRGIGAALCDYMNRMAPPYILYSSCNAQSMVQDIERLAD-YRIEKVRLFDMFPHTAHYEV 368 Query: 359 GVLLVR 364 LLVR Sbjct: 369 LTLLVR 374 >gi|242051741|ref|XP_002455016.1| hypothetical protein SORBIDRAFT_03g003010 [Sorghum bicolor] gi|241926991|gb|EES00136.1| hypothetical protein SORBIDRAFT_03g003010 [Sorghum bicolor] Length = 558 Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 63/215 (29%), Positives = 94/215 (43%), Gaps = 34/215 (15%) Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD----LLELYCGNG 221 Y +T R L ++ NSF Q N +L ++ + G++GD +L+L+CG G Sbjct: 357 YGKPNITEMLRGLTFQISANSFFQTNTK-QADVLYKLIEDSAGLKGDGSEIVLDLFCGTG 415 Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281 L LAR V E+ ++ AR N N ++N V+ + ++ +E Sbjct: 416 TIGLTLARRAKHVYGYEVVPEAIADARKNAKLNGIDNATFVQGDLNKINESFGKE----- 470 Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGM---VQAYPHILYISCNPDSLCRDLSILSTT 338 DI I DP R G+ + V+A P I+Y+SCNP + RDL L Sbjct: 471 FPKPDI-------IISDPNRPGMHMKLIKWLLEVKA-PRIVYVSCNPATCARDLDYLC-- 520 Query: 339 HTIERLAL-----------FDQFPYTRHMECGVLL 362 H +E L D FP+T H+EC LL Sbjct: 521 HGVEEKDLRGFYDLKSVIPVDMFPHTPHIECVCLL 555 >gi|299820611|ref|ZP_07052501.1| 23S rRNA (uracil-5-)-methyltransferase [Listeria grayi DSM 20601] gi|299818106|gb|EFI85340.1| 23S rRNA (uracil-5-)-methyltransferase [Listeria grayi DSM 20601] Length = 460 Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 48/160 (30%), Positives = 79/160 (49%), Gaps = 17/160 (10%) Query: 208 GIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265 G+ GD +++ YCG G+ SL LA++ V VEI ++ A+ N N ++NV Sbjct: 310 GLTGDEIVIDAYCGIGSISLCLAKNAKHVYGVEIVPQAIIDAKANAQLNQLDNVTFETGK 369 Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISC 323 ++E R + + VDPPR G D+ + ++ P ++Y+SC Sbjct: 370 AEEVIPNWYRS------------GIKADVLVVDPPRKGCDEKLLETIIDMKPKKVVYVSC 417 Query: 324 NPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLL 362 NP +L RD+ IL+ +T + + D FP T H+E +L Sbjct: 418 NPATLARDMQILTAGGYTAKTVQPVDMFPMTNHIEAVTVL 457 >gi|317501056|ref|ZP_07959262.1| 23S rRNA (Uracil-5-)-methyltransferase RumA [Lachnospiraceae bacterium 8_1_57FAA] gi|316897443|gb|EFV19508.1| 23S rRNA (Uracil-5-)-methyltransferase RumA [Lachnospiraceae bacterium 8_1_57FAA] Length = 460 Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 64/227 (28%), Positives = 104/227 (45%), Gaps = 23/227 (10%) Query: 142 LHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEW 201 LH + + ++++T++ +D+ E+L L ++ SF QPN + E Sbjct: 249 LHILNDSLSDVVKSDETRVLYGQDFFYEKLL----GLQFKITPFSFFQPNTKGAEVLYET 304 Query: 202 VLAATKGIQG-DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK 260 V I + +L+ G G S VLA +V+ VEI + +VEAA+ N N ++N + Sbjct: 305 VREYIGDIHDLTVFDLFSGTGTISQVLAPVAKKVIGVEIVEEAVEAAKENAERNGLSNCE 364 Query: 261 IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HI 318 + F L DI + I +DPPR G+ + + Y I Sbjct: 365 FIAGDV------------FEVLDDI---KEKPDVIILDPPRDGIHPKALPKILDYGVDRI 409 Query: 319 LYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364 +YISC SL RDL ++ +T+E++ DQF T H+E L+ R Sbjct: 410 VYISCKMTSLARDLELIQQRGYTVEKMTAVDQFCETVHVETVCLMSR 456 >gi|116873139|ref|YP_849920.1| RNA methyltransferase [Listeria welshimeri serovar 6b str. SLCC5334] gi|116742017|emb|CAK21141.1| RNA methyltransferase [Listeria welshimeri serovar 6b str. SLCC5334] Length = 458 Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 47/153 (30%), Positives = 73/153 (47%), Gaps = 16/153 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L++ YCG G A V ++I S+E A+ N N + NV + + Sbjct: 315 LVDAYCGVGTIGQAFAGKVKEVRGMDIIPESIEDAKRNAEKNGIENV---------YYEV 365 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM---VQAYPHILYISCNPDSLC 329 + E + + +R + VDPPRSG D + V+A ++Y+SCNP +L Sbjct: 366 GKAEDVLPKWVN---DGFRPDAVIVDPPRSGCDQGLIKSLLEVEAK-QLVYVSCNPSTLA 421 Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362 RDL++L+ + I + D FP T H+E VLL Sbjct: 422 RDLALLAKKYRIRYMQPVDMFPQTAHVETVVLL 454 >gi|266624563|ref|ZP_06117498.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium hathewayi DSM 13479] gi|288863579|gb|EFC95877.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium hathewayi DSM 13479] Length = 463 Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 71/256 (27%), Positives = 114/256 (44%), Gaps = 28/256 (10%) Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY 166 +D +T+ ++ + RLL R+ LH + + +KT I +DY Sbjct: 218 VDLVTTSQEEPDLMPFAERLLSLPLNG---RIVGILHTWNDSLSDAVKNDKTDILYGQDY 274 Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL--ELYCGNGNFS 224 E L L +R SF Q N+ + +L + G D++ +LY G G + Sbjct: 275 FYEELL----GLKFRISPFSFFQTNS-LGAEVLYEKARSYVGDTKDMVVFDLYSGTGTIA 329 Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284 ++A +V+ VEI + +VEAA+ N N + N EF + LK Sbjct: 330 QMIAPVAKKVVGVEIVEEAVEAAKENAKMNGLENC--------EFIAG-------DVLKV 374 Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILST-THTI 341 ID + I +DPPR G+ +G + Y I+YISC P SL RDL++ + + Sbjct: 375 IDEIEEKPDLIILDPPRDGIHPKALGKIIDYGVNRIVYISCKPTSLVRDLAVFQERGYRV 434 Query: 342 ERLALFDQFPYTRHME 357 E++ D FP T ++E Sbjct: 435 EKVCAVDMFPSTGNVE 450 >gi|160937669|ref|ZP_02085029.1| hypothetical protein CLOBOL_02559 [Clostridium bolteae ATCC BAA-613] gi|158439314|gb|EDP17066.1| hypothetical protein CLOBOL_02559 [Clostridium bolteae ATCC BAA-613] Length = 459 Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 59/188 (31%), Positives = 88/188 (46%), Gaps = 17/188 (9%) Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 SF Q N + L G+ G+ + +LYCG G SL LA+ +V VEI + Sbjct: 284 SFYQVNP-VQTERLYGTALEYAGLTGNEIVWDLYCGIGTISLFLAQKAQKVYGVEIVSQA 342 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 ++ AR N N ++N EF E + + +H+ I VDPPR G Sbjct: 343 IKDARRNAEINGIHNA--------EFFVGKAEEVLPEQFEKKHVHA---DVIVVDPPRKG 391 Query: 304 LDDATVGMV-QAYPH-ILYISCNPDSLCRDLSILS-TTHTIERLALFDQFPYTRHMECGV 360 D + + + P ++Y+SC+ +L RDL L+ + +ER D FP T H+E V Sbjct: 392 CDAVCLDTILKMRPERVVYVSCDSATLARDLRYLADGGYVVERGKCCDMFPGTVHVETVV 451 Query: 361 LLVRKPSG 368 L RK +G Sbjct: 452 ELSRKTNG 459 >gi|257080993|ref|ZP_05575354.1| RNA methyltransferase [Enterococcus faecalis E1Sol] gi|256989023|gb|EEU76325.1| RNA methyltransferase [Enterococcus faecalis E1Sol] Length = 457 Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 45/155 (29%), Positives = 79/155 (50%), Gaps = 15/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G L LA+ ++ +E+ + +V+ A NN K+ + + FT Sbjct: 312 VVDAYCGIGTIGLTLAQDAKQIYGIEVIEEAVKDAE--------NNAKLNNIENATFTAG 363 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330 + E L + + + + VDPPR GLD V +++ P I+Y+SCNP +L R Sbjct: 364 LAEE----LLPKLVENGLQPDVVVVDPPRKGLDGQLVNTLIETQPERIVYVSCNPATLAR 419 Query: 331 DLSILS-TTHTIERLALFDQFPYTRHMECGVLLVR 364 D+++L+ + + + D FP T H+E LL + Sbjct: 420 DIALLTEGGYEAKEIQPVDNFPQTTHIESVTLLTK 454 >gi|197302048|ref|ZP_03167109.1| hypothetical protein RUMLAC_00776 [Ruminococcus lactaris ATCC 29176] gi|197298857|gb|EDY33396.1| hypothetical protein RUMLAC_00776 [Ruminococcus lactaris ATCC 29176] Length = 559 Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 65/228 (28%), Positives = 106/228 (46%), Gaps = 23/228 (10%) Query: 142 LHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEW 201 LH + + ++++T+I +D+ E+L L ++ SF QPN+ + E Sbjct: 246 LHILNDSLSDVVKSDETRILYGQDFFYEKLL----GLQFKITPFSFFQPNSRGAEVLYET 301 Query: 202 VLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK 260 V I+ + +L+ G G VLA +V+ VEI + +VEAA+ N N ++N K Sbjct: 302 VREYIGDIENKTVFDLFSGTGTIGQVLAPVAKKVIGVEIIEEAVEAAKENALRNGLSNCK 361 Query: 261 IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HI 318 + F L +I+ + I +DPPR G+ + + Y I Sbjct: 362 FIAGDV------------FKVLDEIE---EKPDVIVLDPPRDGIHPKALPKILEYGVDRI 406 Query: 319 LYISCNPDSLCRDLSILS-TTHTIERLALFDQFPYTRHMECGVLLVRK 365 +YISC SL RDL ++ + +E++ DQF T H+E VLL K Sbjct: 407 VYISCKMTSLARDLEMMQMAGYRVEKMTAVDQFCETVHVESIVLLSHK 454 >gi|331084332|ref|ZP_08333436.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lachnospiraceae bacterium 6_1_63FAA] gi|330401596|gb|EGG81177.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lachnospiraceae bacterium 6_1_63FAA] Length = 472 Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 61/232 (26%), Positives = 105/232 (45%), Gaps = 31/232 (13%) Query: 142 LHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEW 201 LH + + R+++T+I +DY E + L ++ SF QPN+ + E Sbjct: 254 LHIINNSLSDVVRSDETRILYGQDYFYEEIL----GLKFKITPFSFFQPNS----YGAEV 305 Query: 202 VLAATKGIQGD-----LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV 256 + + GD + +LY G G S ++A V+ VEI + +V+AA N N + Sbjct: 306 LYKTAREYIGDTKEMTVFDLYSGTGTISQIMASVAKEVIGVEIVEEAVKAAGENAHLNGI 365 Query: 257 NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP 316 N + + + ++ + +F I +DPPR G+ + + Y Sbjct: 366 ENCRFIAGDVLKVLDDIQEKPDF---------------IILDPPRDGIHPKALPKIIDYG 410 Query: 317 --HILYISCNPDSLCRDLSI-LSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 ++YISC P SL RDL + L + +E++ DQF T H+E LL ++ Sbjct: 411 VDKLVYISCKPTSLARDLEMFLGRGYQVEKVCCVDQFCQTVHVETVCLLSKR 462 >gi|330997901|ref|ZP_08321735.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Paraprevotella xylaniphila YIT 11841] gi|329569505|gb|EGG51275.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Paraprevotella xylaniphila YIT 11841] Length = 491 Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 63/207 (30%), Positives = 97/207 (46%), Gaps = 24/207 (11%) Query: 171 LTVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGDLL--ELYCGN 220 +T G IY Q+EN SF Q N + L V G+ G L +LY G Sbjct: 296 ITFRGNDHIYLQMENLRFKVGPKSFYQTNTD-QAYELYKVARDFAGLTGTELVYDLYTGT 354 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G + +A +V+ +E ++E A+ N N + N K+ +EF Sbjct: 355 GTIANFVAGKARKVIGIEYVPEAIEDAKINSQINGIGNTLFFAGDMKDILN-----KEF- 408 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGL-DDATVGMVQAYPH-ILYISCNPDSLCRDLSILSTT 338 I H + I DPPR+G+ D ++ A PH I+Y+SCNP + RDL++L + Sbjct: 409 ----IAAHG-QPDVIITDPPRAGMHKDVIETILFAAPHRIVYVSCNPATQARDLALLDSQ 463 Query: 339 HTIERLALFDQFPYTRHMECGVLLVRK 365 + I + D FP+T+H+E V+L R+ Sbjct: 464 YKIMGVRPVDMFPHTQHVENVVMLERR 490 >gi|318607054|emb|CBY28552.1| 23s rRNA (Uracil-5-)-methyltransferase RumA [Yersinia enterocolitica subsp. palearctica Y11] Length = 425 Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 58/200 (29%), Positives = 96/200 (48%), Gaps = 25/200 (12%) Query: 180 YRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLAR 229 Y QIE F Q N +N M+ +A +Q D +L+L+CG GNF+L LA+ Sbjct: 236 YYQIEGLRLAFHPRDFIQVNDTVNQQMVAQAIAWLD-VQPDERVLDLFCGMGNFTLPLAK 294 Query: 230 HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHS 289 V+ VE V +YN N + NV F + + E + +R + Sbjct: 295 LAREVVGVEGVAALVANGQYNALNNALPNVSF-------FHENL--ESDISRQP---WAT 342 Query: 290 YRFKTIFVDPPRSGLDDATVGMVQAYPH-ILYISCNPDSLCRDLSI-LSTTHTIERLALF 347 F + +DP R+G +V+ P ++Y+SCNP +L RD + L+ + + ++ + Sbjct: 343 QGFDKVLLDPARAGAAGVMSHIVKLAPKRVVYVSCNPTTLARDSQVLLAAGYRLAQVRML 402 Query: 348 DQFPYTRHMECGVLLVRKPS 367 D FP+T H+E L +++P Sbjct: 403 DMFPHTGHLESMALFMQEPG 422 >gi|296331894|ref|ZP_06874359.1| putative RNA methyltransferase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305673506|ref|YP_003865178.1| putative RNA methyltransferase [Bacillus subtilis subsp. spizizenii str. W23] gi|296150972|gb|EFG91856.1| putative RNA methyltransferase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305411750|gb|ADM36869.1| putative RNA methyltransferase [Bacillus subtilis subsp. spizizenii str. W23] Length = 466 Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 43/157 (27%), Positives = 77/157 (49%), Gaps = 14/157 (8%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G + +A V +++ K S++ A+ N + + N V +++ + Sbjct: 321 VVDAYCGVGTIGMWVADGAKEVRGMDVIKESIDDAKKNAKKHGMTNATYVTGTAEHWLPK 380 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330 +E +R + VDPPR+G D + +++ P +Y+SCNP +L + Sbjct: 381 WTKE------------GFRPDVVIVDPPRTGCDSTFLDTIIKVKPKRFVYVSCNPSTLAK 428 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRKPS 367 DL LS + ++ + D FP T H+E LV KPS Sbjct: 429 DLQALSKDYRVDYIQPVDMFPQTAHVEAVAKLVLKPS 465 >gi|222100448|ref|YP_002535016.1| RNA methyltransferase, TrmA family [Thermotoga neapolitana DSM 4359] gi|221572838|gb|ACM23650.1| RNA methyltransferase, TrmA family [Thermotoga neapolitana DSM 4359] Length = 439 Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 52/185 (28%), Positives = 93/185 (50%), Gaps = 21/185 (11%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 +F Q N + +++ V +QG+ +L+LY G G FS+ + RV+AVE ++ Sbjct: 268 TAFFQSNYSVTSKLIDHVYRELD-LQGNEVVLDLYAGIGTFSMRTSYSSARVIAVESSRV 326 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302 +V+A + N N N++ + +F ++ + R + +DPPRS Sbjct: 327 AVKAGKANANVNGRRNIEYIESDVLDFLKS---------------YQGRADKVILDPPRS 371 Query: 303 GLD-DATVGMVQAYPH-ILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECG 359 G D +++ P ++Y+SC P +L RD+ L + +++ R+ FD FP T H+E Sbjct: 372 GAGLDVMKEILRLSPERVVYVSCEPSTLVRDVQFLQNEGYSVVRVKPFDMFPQTYHVETV 431 Query: 360 VLLVR 364 V LV+ Sbjct: 432 VTLVK 436 >gi|325295665|ref|YP_004282179.1| RNA methyltransferase, TrmA family [Desulfurobacterium thermolithotrophum DSM 11699] gi|325066113|gb|ADY74120.1| RNA methyltransferase, TrmA family [Desulfurobacterium thermolithotrophum DSM 11699] Length = 432 Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 61/212 (28%), Positives = 96/212 (45%), Gaps = 29/212 (13%) Query: 159 KICLDRDYVDERLTVAGRTLIYRQI--------ENSFTQPNAGINVHMLEWVLAATKGIQ 210 K+C D ER+ GR Y + +SF Q N ++++ V A Q Sbjct: 228 KVC--SDGYPERIKFFGRDFTYETVGKFKFRVSADSFFQVNRFQVFNLIDKVSKAAMEHQ 285 Query: 211 GDLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269 +L +LYCG G ++ + R+ R VE ++ A YN +N ++ V +E Sbjct: 286 YNLAGDLYCGVGTLTIPVGRYVHRAFGVEANFSAISDALYN---KDINGLRSVNFYCRET 342 Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP---HILYISCNPD 326 + + DI + ++ + VDPPRSGL V + P I+Y+SCNP Sbjct: 343 EEGL----------DI-VKNHNPDFVVVDPPRSGLSQRVVRELANLPRLKKIVYVSCNPS 391 Query: 327 SLCRDLSILSTTH-TIERLALFDQFPYTRHME 357 +L RD+++ +ER L D FP T H+E Sbjct: 392 TLARDIALFHQYGINMERAKLIDMFPQTYHVE 423 >gi|123441098|ref|YP_001005087.1| 23S rRNA 5-methyluridine methyltransferase [Yersinia enterocolitica subsp. enterocolitica 8081] gi|226725400|sp|A1JJR0|RUMA_YERE8 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|122088059|emb|CAL10847.1| 23s rRNA (uracil-5-)-methyltransferase [Yersinia enterocolitica subsp. enterocolitica 8081] gi|330859216|emb|CBX69567.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Yersinia enterocolitica W22703] Length = 443 Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 58/203 (28%), Positives = 92/203 (45%), Gaps = 31/203 (15%) Query: 180 YRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLAR 229 Y QIE F Q N +N M+ +A +Q D +L+L+CG GNF+L LA+ Sbjct: 254 YYQIEGLRLAFHPRDFIQVNDTVNQQMVAQAIAWLD-VQPDERVLDLFCGMGNFTLPLAK 312 Query: 230 HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHS 289 V+ VE V +YN N + NV N DI Sbjct: 313 LAREVVGVEGVAALVANGQYNALNNALPNVSFFHE---------------NLESDISRQP 357 Query: 290 YR---FKTIFVDPPRSGLDDATVGMVQAYPH-ILYISCNPDSLCRDLSI-LSTTHTIERL 344 + F + +DP R+G +V+ P ++Y+SCNP +L RD + L+ + + ++ Sbjct: 358 WATQGFDKVLLDPARAGAAGVMSHIVKLAPKRVVYVSCNPTTLARDSQVLLAAGYRLAQV 417 Query: 345 ALFDQFPYTRHMECGVLLVRKPS 367 + D FP+T H+E L +++P Sbjct: 418 RMLDMFPHTGHLESMALFMQEPG 440 >gi|329667821|gb|AEB93769.1| hypothetical protein LJP_1447c [Lactobacillus johnsonii DPC 6026] Length = 450 Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 47/155 (30%), Positives = 73/155 (47%), Gaps = 15/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ Y G G L +A+H V +E+ +P+VE A N N + N + V ++E Sbjct: 305 VIDAYSGIGTIGLSVAKHVKAVRGMEVIEPAVEDANANAKLNGITNAEYVVGKAEEVMPR 364 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCR 330 +E + IFVDPPR GL + V+ P I+YISCNP ++ R Sbjct: 365 WAKE------------GLKTDVIFVDPPRKGLTPEFIDAAVETNPKKIVYISCNPATMVR 412 Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364 DL + + + + D FP T H+E +L R Sbjct: 413 DLQLFKEQGYDFDEIDPVDMFPQTPHVESVTVLER 447 >gi|253729672|ref|ZP_04863837.1| TrmA family RNA methyltransferase [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253726613|gb|EES95342.1| TrmA family RNA methyltransferase [Staphylococcus aureus subsp. aureus USA300_TCH959] Length = 453 Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 45/152 (29%), Positives = 70/152 (46%), Gaps = 14/152 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +L+ YCG G L +A H V VE+ ++E A+ N N NN V ++E Sbjct: 311 VLDTYCGIGTIGLYMAPHAKHVYGVEVVPSAIEDAQQNATINQCNNTTFVCGKAEEVILQ 370 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330 + + + + VDPPR G D+ + ++ P I+YISCNP + R Sbjct: 371 WKAQ------------GIKPDVVMVDPPRKGCDETFIQTLLTLEPKRIVYISCNPATQQR 418 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLL 362 D +L+ + +E + D FP T H+E L Sbjct: 419 DALLLAEKYQLEEVTPVDMFPQTTHVETVALF 450 >gi|160943841|ref|ZP_02091072.1| hypothetical protein FAEPRAM212_01340 [Faecalibacterium prausnitzii M21/2] gi|158445015|gb|EDP22018.1| hypothetical protein FAEPRAM212_01340 [Faecalibacterium prausnitzii M21/2] Length = 394 Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 65/208 (31%), Positives = 95/208 (45%), Gaps = 26/208 (12%) Query: 172 TVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLAR 229 T+ G+T Y SF Q N + + A K + G +L+ YCG G L A Sbjct: 200 TLCGKT--YAISPRSFYQVNPAQTAVLYGLAVEAAK-LTGKEVVLDAYCGIGTIGLTAAD 256 Query: 230 HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHS 289 H +V+ VE+ + +V+ A N A H N VK R + + T+ +R D+ Sbjct: 257 HAKQVVGVELNRDAVQDAIGN--ARH-NGVKNARFFAADATRWIREAAAAGEKADV---- 309 Query: 290 YRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST-THTIERLAL 346 IF+DPPR G + V A ++Y+SCNP +L RDL+ L+ + E Sbjct: 310 -----IFMDPPREGSTPEFLASVARMAPKRVVYVSCNPVTLARDLATLTKLGYKAEGFTP 364 Query: 347 FDQFPYTRHMECGVLLV------RKPSG 368 D FP+T H+E L +KPSG Sbjct: 365 VDMFPHTEHIETVCALSKLEIHRKKPSG 392 >gi|21283567|ref|NP_646655.1| hypothetical protein MW1838 [Staphylococcus aureus subsp. aureus MW2] gi|49486716|ref|YP_043937.1| putative RNA methyltransferase [Staphylococcus aureus subsp. aureus MSSA476] gi|297208925|ref|ZP_06925329.1| 23S rRNA (uracil-5-)-methyltransferase [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300913018|ref|ZP_07130456.1| 23S rRNA (uracil-5-)-methyltransferase [Staphylococcus aureus subsp. aureus TCH70] gi|50401765|sp|Q8NVT4|Y1838_STAAW RecName: Full=Uncharacterized RNA methyltransferase MW1838 gi|81649033|sp|Q6G836|Y1819_STAAS RecName: Full=Uncharacterized RNA methyltransferase SAS1819 gi|21205008|dbj|BAB95703.1| MW1838 [Staphylococcus aureus subsp. aureus MW2] gi|49245159|emb|CAG43625.1| putative RNA methyltransferase [Staphylococcus aureus subsp. aureus MSSA476] gi|296886415|gb|EFH25344.1| 23S rRNA (uracil-5-)-methyltransferase [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300885796|gb|EFK81003.1| 23S rRNA (uracil-5-)-methyltransferase [Staphylococcus aureus subsp. aureus TCH70] gi|329731488|gb|EGG67851.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus subsp. aureus 21193] Length = 453 Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 45/152 (29%), Positives = 70/152 (46%), Gaps = 14/152 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +L+ YCG G L +A H V VE+ ++E A+ N N NN V ++E Sbjct: 311 VLDTYCGIGTIGLYMAPHAKHVYGVEVVPSAIEDAQQNATINQCNNTTFVCGKAEEVILQ 370 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330 + + + + VDPPR G D+ + ++ P I+YISCNP + R Sbjct: 371 WKAQ------------GIKPDVVMVDPPRKGCDETFIQTLLTLEPKRIVYISCNPATQQR 418 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLL 362 D +L+ + +E + D FP T H+E L Sbjct: 419 DALLLAEKYQLEEVTPVDMFPQTTHVETVALF 450 >gi|323439838|gb|EGA97554.1| RNA methyltransferase [Staphylococcus aureus O11] gi|323443001|gb|EGB00622.1| RNA methyltransferase [Staphylococcus aureus O46] Length = 453 Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 45/152 (29%), Positives = 70/152 (46%), Gaps = 14/152 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +L+ YCG G L +A H V VE+ ++E A+ N N NN V ++E Sbjct: 311 VLDTYCGIGTIGLYMAPHAKHVYGVEVVPSAIEDAQQNATINQCNNTTFVCGKAEEVILQ 370 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330 + + + + VDPPR G D+ + ++ P I+YISCNP + R Sbjct: 371 WKAQ------------GIKPDVVMVDPPRKGCDETFIQTLLTLEPKRIVYISCNPATQQR 418 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLL 362 D +L+ + +E + D FP T H+E L Sbjct: 419 DALLLAEKYQLEEVTPVDMFPQTTHVETVALF 450 >gi|282917244|ref|ZP_06324999.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus subsp. aureus D139] gi|283771047|ref|ZP_06343938.1| TrmA family RNA methyltransferase [Staphylococcus aureus subsp. aureus H19] gi|282318871|gb|EFB49226.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus subsp. aureus D139] gi|283459641|gb|EFC06732.1| TrmA family RNA methyltransferase [Staphylococcus aureus subsp. aureus H19] Length = 453 Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 45/152 (29%), Positives = 70/152 (46%), Gaps = 14/152 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +L+ YCG G L +A H V VE+ ++E A+ N N NN V ++E Sbjct: 311 VLDTYCGIGTIGLYMAPHAKHVYGVEVVPSAIEDAQQNATINQCNNTTFVCGKAEEVILQ 370 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330 + + + + VDPPR G D+ + ++ P I+YISCNP + R Sbjct: 371 WKAQ------------GIKPDVVMVDPPRKGCDETFIQTLLTLEPKRIVYISCNPATQQR 418 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLL 362 D +L+ + +E + D FP T H+E L Sbjct: 419 DALLLAEKYQLEEVTPVDMFPQTTHVETVALF 450 >gi|258422974|ref|ZP_05685873.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus A9635] gi|257846761|gb|EEV70776.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus A9635] Length = 453 Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 45/152 (29%), Positives = 70/152 (46%), Gaps = 14/152 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +L+ YCG G L +A H V VE+ ++E A+ N N NN V ++E Sbjct: 311 VLDTYCGIGTIGLYMAPHAKHVYGVEVVPSAIEDAQQNATINQCNNTTFVCGKAEEVILQ 370 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330 + + + + VDPPR G D+ + ++ P I+YISCNP + R Sbjct: 371 WKAQ------------GIKPDVVMVDPPRKGCDETFIQTLLTLEPKRIVYISCNPATQQR 418 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLL 362 D +L+ + +E + D FP T H+E L Sbjct: 419 DALLLAEKYQLEEVTPVDMFPQTTHVETVALF 450 >gi|261822786|ref|YP_003260892.1| 23S rRNA 5-methyluridine methyltransferase [Pectobacterium wasabiae WPP163] gi|261606799|gb|ACX89285.1| RNA methyltransferase, TrmA family [Pectobacterium wasabiae WPP163] Length = 449 Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 57/195 (29%), Positives = 91/195 (46%), Gaps = 19/195 (9%) Query: 173 VAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNFSLVLARHF 231 VAG TL + F Q N +N M+ LA Q +L+L+CG GNF+L LA+ Sbjct: 262 VAGLTLAFS--PRDFIQVNDAVNQQMVAQALAWLDVQPQDKILDLFCGMGNFTLPLAQRA 319 Query: 232 DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNRLKDIDIHSY 290 ++ VE VE R N N ++NV + + TQ + F++ Sbjct: 320 ASIVGVEGVTALVEKGRENARRNALSNVTFFHQNLEDDVTQQPWAAQGFDK--------- 370 Query: 291 RFKTIFVDPPRSGLDDATVGMVQAYPH-ILYISCNPDSLCRDLSI-LSTTHTIERLALFD 348 I +DP R+G + + P ++Y+SCN +L RD + L+ + + +A+ D Sbjct: 371 ----ILLDPARAGAAGVMEQITRLAPKRVVYVSCNATTLARDSKVLLAAGYRLANVAMLD 426 Query: 349 QFPYTRHMECGVLLV 363 FP+T H+E L + Sbjct: 427 MFPHTGHLESMALFL 441 >gi|296111231|ref|YP_003621613.1| RNA methyltransferase [Leuconostoc kimchii IMSNU 11154] gi|295832763|gb|ADG40644.1| RNA methyltransferase [Leuconostoc kimchii IMSNU 11154] Length = 458 Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 61/185 (32%), Positives = 87/185 (47%), Gaps = 29/185 (15%) Query: 185 NSFTQPNAGINVHMLE--WVLAATKG---IQGDLLELYCGNGNFSLVLARHFDRVLAVEI 239 NSF Q +N M E + LAA K +++ Y G G + +A +VL VE+ Sbjct: 284 NSFYQ----VNPQMTEKLYDLAAQKANLKTTDVVIDAYSGIGTIGITVANQVKQVLGVEV 339 Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299 +V A+ NI AN + N + + E +F R +D + + +FVDP Sbjct: 340 VPGAVADAQLNIKANKIKNATYILADAPE---------QFKRWQDAGL---KPDVVFVDP 387 Query: 300 PRSGLDD----ATVGMVQAYPHILYISCNPDSLCRD-LSILSTTHTIERLAL-FDQFPYT 353 PR GL ATV M ++YISCNP +L RD + IL + + L DQFP T Sbjct: 388 PRRGLTSQLIQATVDM--GPDRLVYISCNPVTLARDTVEILEKGYHLSGTILPVDQFPQT 445 Query: 354 RHMEC 358 H+E Sbjct: 446 SHIES 450 >gi|254173067|ref|ZP_04879741.1| 23S rRNA (uracil-5-)-methyltransferase [Thermococcus sp. AM4] gi|214033223|gb|EEB74051.1| 23S rRNA (uracil-5-)-methyltransferase [Thermococcus sp. AM4] Length = 418 Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 60/184 (32%), Positives = 87/184 (47%), Gaps = 27/184 (14%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 NSF Q N+ + LE +L A + +L+LY G G F + LA+ RV +EI Sbjct: 258 NSFFQTNS----YALELLLRAVENFTDGERVLDLYSGVGTFGVYLAKRGFRVEGIEINPF 313 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302 +VE A N N VN + R ++ I Y T+ VDPPR Sbjct: 314 AVEMANRNAKLNGVNA-----------------QFRVGRAEETPIGDY--DTVIVDPPRK 354 Query: 303 GLDDATVGMVQA-YPHILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHMECGV 360 GL +A +V++ ++Y+SCNP + D + L + +E L D FP+T H+E V Sbjct: 355 GLKEAGELLVKSGVERVVYVSCNPKAFKLDYENHLKKAYRVEEAILVDMFPHTSHVEAVV 414 Query: 361 LLVR 364 LL R Sbjct: 415 LLSR 418 >gi|195927327|pdb|2VS1|A Chain A, The Crystal Structure Of Pyrococcus Abyssi Trna (Uracil-54, C5)-Methyltransferase In Complex With S-Adenosyl-L- Homocysteine Length = 425 Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 54/181 (29%), Positives = 89/181 (49%), Gaps = 25/181 (13%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSF Q N+ V+++ V +G + +L++Y G G F + LA+ V + + ++ Sbjct: 268 NSFFQTNSYQAVNLVRKVSELVEGEK--ILDMYSGVGTFGIYLAKRGFNVKGFDSNEFAI 325 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 E AR N+ N+V+ EF D ++ F T+ VDPPR+GL Sbjct: 326 EMARRNVEINNVDA-------------------EFEVASDREVSVKGFDTVIVDPPRAGL 366 Query: 305 DDATVG-MVQAYPH-ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362 V + + P I+Y+SCNP++ RD+ +L + I+ + D FP+T H+E L Sbjct: 367 HPRLVKRLNREKPGVIVYVSCNPETFARDVKMLD--YRIDEIVALDMFPHTPHVELVAKL 424 Query: 363 V 363 V Sbjct: 425 V 425 >gi|332292761|ref|YP_004431370.1| RNA methyltransferase, TrmA family [Krokinobacter diaphorus 4H-3-7-5] gi|332170847|gb|AEE20102.1| RNA methyltransferase, TrmA family [Krokinobacter diaphorus 4H-3-7-5] Length = 470 Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 61/215 (28%), Positives = 101/215 (46%), Gaps = 24/215 (11%) Query: 163 DRDYVDERLTVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGDLL 214 D Y E + +GR I+ ++E SF Q N+ + L + G+ G+ L Sbjct: 268 DTIYDQEVICFSGRDHIFEEMEGLKFKINAKSFYQTNSK-QAYELYKITRDFAGLSGNEL 326 Query: 215 --ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +LY G G + +A+ +V+ VE ++EAA+ N N + N + F Sbjct: 327 VYDLYTGTGTIAQFVAKKARKVIGVEAVPDAIEAAKENAKLNGIENTEF-------FVGD 379 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD-DATVGMVQAYPH-ILYISCNPDSLCR 330 M++ FN I+ H I DPPR G+ D ++ P ++Y+SCN + R Sbjct: 380 MKKV--FN-TDFINTHGVP-DIIITDPPRDGMHADVVQQIINISPEKVVYVSCNSATQAR 435 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 DL++L T+ + ++ D FP T H+E VLL ++ Sbjct: 436 DLALLDDTYKVTKVQPVDMFPQTHHVENVVLLEKR 470 >gi|332160480|ref|YP_004297057.1| 23S rRNA 5-methyluridine methyltransferase [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325664710|gb|ADZ41354.1| 23S rRNA 5-methyluridine methyltransferase [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 425 Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 58/200 (29%), Positives = 96/200 (48%), Gaps = 25/200 (12%) Query: 180 YRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLAR 229 Y QIE F Q N +N M+ +A +Q D +L+L+CG GNF+L LA+ Sbjct: 236 YYQIEGLRLAFHPRDFIQVNDTVNQQMVAQAIAWLD-VQPDERVLDLFCGMGNFTLPLAK 294 Query: 230 HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHS 289 V+ VE V +YN N + NV F + + E + +R + Sbjct: 295 LAREVVGVEGVAALVANGQYNALNNALPNVSF-------FHENL--ESDISRQP---WAT 342 Query: 290 YRFKTIFVDPPRSGLDDATVGMVQAYPH-ILYISCNPDSLCRDLSI-LSTTHTIERLALF 347 F + +DP R+G +V+ P ++Y+SCNP +L RD + L+ + + ++ + Sbjct: 343 QGFDKVLLDPARAGAAGVMSHIVKLAPKRVVYVSCNPTTLARDSQVLLAAGYRLAQVRML 402 Query: 348 DQFPYTRHMECGVLLVRKPS 367 D FP+T H+E L +++P Sbjct: 403 DMFPHTGHLESMALFMQEPG 422 >gi|50122491|ref|YP_051658.1| 23S rRNA 5-methyluridine methyltransferase [Pectobacterium atrosepticum SCRI1043] gi|115298496|sp|Q6D178|RUMA_ERWCT RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|49613017|emb|CAG76468.1| 23S rRNA (uracil-5-)-methyltransferase [Pectobacterium atrosepticum SCRI1043] Length = 450 Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 58/195 (29%), Positives = 91/195 (46%), Gaps = 19/195 (9%) Query: 173 VAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHF 231 VAG TL + F Q N +N M+ LA D +L+L+CG GNF+L LA+ Sbjct: 262 VAGLTLAFS--PRDFIQVNDAVNQQMVAQALAWLDVQSQDRILDLFCGMGNFTLPLAQRA 319 Query: 232 DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNRLKDIDIHSY 290 V+ VE VE R N N ++NV + + TQ + F++ Sbjct: 320 ASVVGVEGVTALVEKGRENARRNALSNVTFFHQNLEDDVTQQPWAAQGFDK--------- 370 Query: 291 RFKTIFVDPPRSGLDDATVGMVQAYPH-ILYISCNPDSLCRDLSI-LSTTHTIERLALFD 348 I +DP R+G + + P ++Y+SCN +L RD + L+ + + +A+ D Sbjct: 371 ----ILLDPARAGAAGVMEQITRLAPKRVVYVSCNATTLARDSKVLLAAGYRLANVAMLD 426 Query: 349 QFPYTRHMECGVLLV 363 FP+T H+E L + Sbjct: 427 MFPHTGHLESMALFL 441 >gi|298695236|gb|ADI98458.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus ED133] Length = 453 Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 45/152 (29%), Positives = 70/152 (46%), Gaps = 14/152 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +L+ YCG G L +A H V VE+ ++E A+ N N NN V ++E Sbjct: 311 VLDTYCGIGTIGLYMAPHAKHVYGVEVVPSAIEDAQQNATINQCNNTTFVCGKAEEVILQ 370 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330 + + + + VDPPR G D+ + ++ P I+YISCNP + R Sbjct: 371 WKAQ------------GIKPDVVMVDPPRKGCDETFIQTLLTLEPKRIVYISCNPATQQR 418 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLL 362 D +L+ + +E + D FP T H+E L Sbjct: 419 DALLLAEKYQLEEVTPVDMFPQTTHVETVALF 450 >gi|158338369|ref|YP_001519546.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Acaryochloris marina MBIC11017] gi|158308610|gb|ABW30227.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Acaryochloris marina MBIC11017] Length = 478 Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 48/159 (30%), Positives = 82/159 (51%), Gaps = 19/159 (11%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++LYCG G +L LA+ ++ +E+ +V+ A+ N N ++NV ++K A Sbjct: 335 VVDLYCGIGTLTLPLAQRVKEIIGIELQAAAVDQAQTNATLNQISNVTFAAGTAK----A 390 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330 RE F + D+ + +DPPR G + + + A I+Y+SC+ +L R Sbjct: 391 CLRELPF--VPDL---------VLLDPPRKGCHQSVIEQLLALKPAQIVYVSCHSATLAR 439 Query: 331 DLSIL--STTHTIERLALFDQFPYTRHMECGVLLVRKPS 367 DL++L S + + R+ D FP T H+EC L R+ S Sbjct: 440 DLNLLCQSGQYDLTRVQPVDFFPQTSHVECVAFLNRRAS 478 >gi|226950817|ref|YP_002805908.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum A2 str. Kyoto] gi|226841903|gb|ACO84569.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum A2 str. Kyoto] Length = 461 Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 45/155 (29%), Positives = 76/155 (49%), Gaps = 15/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + + YCG G SL L++ +V VEI K +++ A+ N N ++N + S+E Sbjct: 316 VFDAYCGTGTISLFLSQKAKKVYGVEIIKEAIDNAKDNAKENRIDNAEFFVGKSEEV--- 372 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330 + D+ + + + VDPPR G + + + A I+Y+SC+ +L R Sbjct: 373 ---------IPDLIDKGIKAEVVVVDPPRKGCEKTLLEAIAATKPKRIVYVSCDSGTLAR 423 Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364 DL IL+ + + + D FP T H+E VL+ R Sbjct: 424 DLGILNGLGYETKEVQPVDMFPQTSHVETIVLIQR 458 >gi|225376677|ref|ZP_03753898.1| hypothetical protein ROSEINA2194_02319 [Roseburia inulinivorans DSM 16841] gi|225211560|gb|EEG93914.1| hypothetical protein ROSEINA2194_02319 [Roseburia inulinivorans DSM 16841] Length = 498 Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 47/153 (30%), Positives = 78/153 (50%), Gaps = 18/153 (11%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + +LY G G + +L+ +V+ VEI + +VEAA+ N N ++N + + Sbjct: 356 VFDLYSGTGTIAQMLSPVAKKVIGVEIIEEAVEAAKENAQLNGLHNCEFIAG-------- 407 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330 + LK ID + I +DPPR G++ + + Y P ++YISC P SL R Sbjct: 408 -------DVLKVIDSIEEKPDYIVLDPPRDGINPKALEKIIRYNVPQMVYISCKPTSLAR 460 Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLL 362 DL +L + ++++ D FP T H+E VL+ Sbjct: 461 DLEVLQARGYEVKKVCCVDMFPSTFHVESVVLM 493 >gi|237809485|ref|YP_002893925.1| 23S rRNA 5-methyluridine methyltransferase [Tolumonas auensis DSM 9187] gi|237501746|gb|ACQ94339.1| RNA methyltransferase, TrmA family [Tolumonas auensis DSM 9187] Length = 440 Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 51/185 (27%), Positives = 86/185 (46%), Gaps = 16/185 (8%) Query: 185 NSFTQPNAGINVHMLEWV---LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241 F Q N +N ++ +V LA T ++L+L+CG GNF+L LAR V +E Sbjct: 268 GDFLQVNPQVNQRLVNYVREWLAPTA--TDNVLDLFCGIGNFTLPLAREAASVTGIEGVD 325 Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301 V+ A +N N + N R + + + + + +DP R Sbjct: 326 EMVQRATHNAEQNQLVNTGFHRADLTKMAE----------YANAGWQQQCYDLVLLDPGR 375 Query: 302 SGLDDATVGMVQAYPH-ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360 +G + + ++ I+Y+SCNP + RD ++L +T+++ L D FP+T H+E Sbjct: 376 TGAEAVMPWLAKSGARRIVYVSCNPVTAARDCALLQPGYTLKQWGLLDMFPHTGHVESLF 435 Query: 361 LLVRK 365 L RK Sbjct: 436 LFERK 440 >gi|166030479|ref|ZP_02233308.1| hypothetical protein DORFOR_00140 [Dorea formicigenerans ATCC 27755] gi|166029731|gb|EDR48488.1| hypothetical protein DORFOR_00140 [Dorea formicigenerans ATCC 27755] Length = 467 Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 88/351 (25%), Positives = 154/351 (43%), Gaps = 53/351 (15%) Query: 39 EPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPG---SLLIN---ALMIEMMA 92 EP HYR +A+F I D KE I F G S++ N AL + + Sbjct: 128 EPFHYRNKAQFPIGTD-------------KEGHIITGFYAGRTHSIIPNTDCALGVAVNQ 174 Query: 93 TIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRE-----CAIRLRDAL-HARK 146 I LE +L + +++++ ++ L+ H L+ ++ C + + L HA K Sbjct: 175 KI-LEIILH--FMENNHISAYDEEKHKGLVRHVLIRYGFKTDEIMVCLVINGEKLPHAEK 231 Query: 147 YQIQLIGRANKTKICLDRDYVDERLTVA-------GRTLIYRQIEN--------SFTQPN 191 +L + T I + + + + G+T I I N SF Q N Sbjct: 232 LVDKLCEISGMTSITISVNKAKTNVIMGKEIKLLWGQTYITDYIGNVKYQISPLSFYQVN 291 Query: 192 AGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249 + L + + G+ + +LYCG G SL LA++ +V VEI +++ AR Sbjct: 292 P-VQTEKLYGLALDYADLNGNETVWDLYCGIGTISLFLAQNAKQVYGVEIVPQAIDDARN 350 Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309 N N + N + ++E RE + + + + I VDPPR G +++ + Sbjct: 351 NAKINDITNAEFYVGKAEEVLPGYYREYQESHGGE----TAHADVIVVDPPRKGCEESLL 406 Query: 310 -GMVQAYPH-ILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHME 357 +V P ++Y+SC+ +L RD+ L + + ++++ DQFP T H+E Sbjct: 407 QTIVDMQPEKVVYVSCDSATLARDVKFLRESGYELKKITPVDQFPNTVHVE 457 >gi|298373691|ref|ZP_06983680.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroidetes oral taxon 274 str. F0058] gi|298274743|gb|EFI16295.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroidetes oral taxon 274 str. F0058] Length = 477 Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 45/156 (28%), Positives = 79/156 (50%), Gaps = 15/156 (9%) Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE-FTQAM 273 +LY G G + +AR +V+ +E ++E A+ N A N + N + K+ +Q+ Sbjct: 331 DLYTGTGTIANFVARKAKKVIGIEYVPEAIEDAKENSAINGIVNTEFFAGDMKDVLSQSF 390 Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG--MVQAYPHILYISCNPDSLCRD 331 +D H + I DPPR+G+ + + ++ + P I+Y+SCNP + RD Sbjct: 391 -----------VDYHG-QPDVIITDPPRAGMHEDVIKTILLASAPRIVYVSCNPATQARD 438 Query: 332 LSILSTTHTIERLALFDQFPYTRHMECGVLLVRKPS 367 L +L + I + D FP+T H+E VLL ++ + Sbjct: 439 LQMLDADYKIVAVQPVDMFPHTHHVENVVLLEKRKT 474 >gi|297587111|ref|ZP_06945756.1| 23S rRNA (uracil-5-)-methyltransferase [Finegoldia magna ATCC 53516] gi|297575092|gb|EFH93811.1| 23S rRNA (uracil-5-)-methyltransferase [Finegoldia magna ATCC 53516] Length = 404 Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 45/156 (28%), Positives = 78/156 (50%), Gaps = 18/156 (11%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +L+LYCG G ++ + + + + VE+ K +V+ A N N++ +++ + S+ Sbjct: 264 ILDLYCGIGTTTMYIG-NGNNTIGVEVVKDAVKDANENKKLNNLESIQFIEEKSENVVGK 322 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCR 330 + +E F I VDPPR G+D+ V + ++YISC+P +L R Sbjct: 323 LTQEH--------------FDIILVDPPRKGMDEKVVDAIIKSTAKKLVYISCDPATLAR 368 Query: 331 DLSILSTTH-TIERLALFDQFPYTRHMECGVLLVRK 365 DL +L+ + + L D F T H+E VL+ RK Sbjct: 369 DLKMLTENGFAVIDVKLVDMFAKTMHVESVVLMSRK 404 >gi|291556144|emb|CBL33261.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Eubacterium siraeum V10Sc8a] Length = 474 Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 54/189 (28%), Positives = 91/189 (48%), Gaps = 16/189 (8%) Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVE 238 +R +SF Q N + ++ + A K + D LL+ Y G G ++ + + +V +E Sbjct: 204 FRISPHSFYQINHAQTEKLYDYAIKAAKLTKKDVLLDAYSGIGTIGIIASDYVKQVQGIE 263 Query: 239 IAKPSVEAARYNIAANHVN-NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFV 297 +V A N N + N+ R + EF + + + H + + + Sbjct: 264 YNASAVRDAVKNCHENGLTRNIAFNRGDAGEFLEKKAK---------LGTH---YDAVIL 311 Query: 298 DPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRH 355 DP R+G D + +V+ P I+YISCNP + RDL L+ +T+ + FD FP+TRH Sbjct: 312 DPARTGADRKFLNSLVKIAPERIVYISCNPATQARDLKTLTKKYTVTDIQPFDMFPHTRH 371 Query: 356 MECGVLLVR 364 +E VLL + Sbjct: 372 VETVVLLSK 380 >gi|170720402|ref|YP_001748090.1| 23S rRNA 5-methyluridine methyltransferase [Pseudomonas putida W619] gi|169758405|gb|ACA71721.1| RNA methyltransferase, TrmA family [Pseudomonas putida W619] Length = 452 Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 64/200 (32%), Positives = 92/200 (46%), Gaps = 22/200 (11%) Query: 172 TVAGRTLIYRQIE-----NSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFS 224 T G TL Q+E F Q NA +N M+E LA Q D +L+L+CG GNF+ Sbjct: 263 TKLGFTLQPWQLELAWRPGDFVQVNAQVNTAMIEQALAWLA-PQADERVLDLFCGLGNFA 321 Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284 L LAR V+AVE + V+ A NNV R + +Q L Sbjct: 322 LPLARQAREVVAVEGVQAMVD---RAAANARNNNVHNARFFQADLSQP---------LAG 369 Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSIL-STTHTIE 342 + F + +DPPR G + G+ + ++Y+SCNP +L RD +L + ++ Sbjct: 370 AGWAAEGFSAVLLDPPRDGAFEVVQGIARLKAKRLVYVSCNPATLARDAQVLVGQGYRLK 429 Query: 343 RLALFDQFPYTRHMECGVLL 362 R + D FP T H+E L Sbjct: 430 RAGILDMFPQTAHVEAMALF 449 >gi|68069515|ref|XP_676669.1| hypothetical protein [Plasmodium berghei strain ANKA] gi|56496471|emb|CAH94117.1| conserved hypothetical protein [Plasmodium berghei] Length = 744 Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 44/162 (27%), Positives = 82/162 (50%), Gaps = 18/162 (11%) Query: 206 TKGIQGDLLELYCGNGNFSLVLA---RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262 K ++ + +L CG G S+ +A +H D ++ ++I + S+ +A N N + N K + Sbjct: 584 NKNMKNYIFDLCCGTGTISICIANAMKHEDIIVGIDICEESIISANKNAQINKIKNYKFI 643 Query: 263 RMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA-YP--HIL 319 + +E +K+I + + VDPPRSGL + + + + +P I+ Sbjct: 644 KGRVEELFSG--------EIKNISQQNCNI-IVIVDPPRSGLAQSVINTLSSTHPINQII 694 Query: 320 YISCNPDSLCRDLS---ILSTTHTIERLALFDQFPYTRHMEC 358 Y+SCNP +L +++ ++ I+ L D FP+T H+EC Sbjct: 695 YVSCNPSTLINNVTNLLFMNEYFKIKNLVFVDMFPHTYHLEC 736 >gi|237742795|ref|ZP_04573276.1| tRNA (Uracil-5-)-methyltransferase [Fusobacterium sp. 4_1_13] gi|229430443|gb|EEO40655.1| tRNA (Uracil-5-)-methyltransferase [Fusobacterium sp. 4_1_13] Length = 453 Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 42/155 (27%), Positives = 77/155 (49%), Gaps = 15/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ Y G G +++A+ +V A+EI K + E N + N++ + A Sbjct: 308 IVDAYSGTGTIGMIMAKKAKKVYAIEIVKSASEDGEKTAKENGIKNIEFI-------NGA 360 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCR 330 + +E L ++ ++ + TI DPPR GL+ + + V ++YISCNP + R Sbjct: 361 VEKE-----LVNLINNNQKIDTIIFDPPRKGLEASIIVTVAKLNLKEVVYISCNPSTFAR 415 Query: 331 DLSILSTT-HTIERLALFDQFPYTRHMECGVLLVR 364 D+ + S + +++L D FP T H+E L+ R Sbjct: 416 DVKLFSEKGYVLKKLQAVDMFPQTSHVETIALIQR 450 >gi|255034870|ref|YP_003085491.1| RNA methyltransferase, TrmA family [Dyadobacter fermentans DSM 18053] gi|254947626|gb|ACT92326.1| RNA methyltransferase, TrmA family [Dyadobacter fermentans DSM 18053] Length = 465 Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 49/156 (31%), Positives = 81/156 (51%), Gaps = 15/156 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + +LY G G + +AR +V+ VE + +V+ AR N N + N F Sbjct: 322 VYDLYTGTGTIANFVARSAKKVVGVEYVEAAVQDARINSQLNGITNTAF-------FAGD 374 Query: 273 MRREREFNRLKDIDIHSY-RFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLC 329 MR + + +H++ R I DPPR+G+D + +++A P ++Y+SCN + Sbjct: 375 MRA-----IMNESFLHTHGRPDVIITDPPRAGMDVPVIETILKAAPDRVVYVSCNTATQA 429 Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 RDL+++S + + R+ D FP T H+E LLVRK Sbjct: 430 RDLALMSEDYEVTRVQPVDMFPNTHHVENVALLVRK 465 >gi|254826049|ref|ZP_05231050.1| RNA methyltransferase [Listeria monocytogenes FSL J1-194] gi|293595289|gb|EFG03050.1| RNA methyltransferase [Listeria monocytogenes FSL J1-194] Length = 459 Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 47/153 (30%), Positives = 73/153 (47%), Gaps = 16/153 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L++ YCG G A V ++I S+E A+ N N + NV + + Sbjct: 315 LVDAYCGVGTIGQAFAGKVKEVRGMDIIPESIEDAKRNAEKNGIENV---------YYEV 365 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM---VQAYPHILYISCNPDSLC 329 + E + + +R + VDPPRSG D + V+A ++Y+SCNP +L Sbjct: 366 GKAEDVLPKWVN---EGFRPDAVIVDPPRSGCDQGLIKSLLDVEAK-QLVYVSCNPSTLA 421 Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362 RDL++L+ + I + D FP T H+E VLL Sbjct: 422 RDLALLAKKYRIRYMHPVDMFPQTAHVETVVLL 454 >gi|82751550|ref|YP_417291.1| RNA methyltransferase [Staphylococcus aureus RF122] gi|82657081|emb|CAI81518.1| RNA methyltransferase [Staphylococcus aureus RF122] Length = 453 Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 45/152 (29%), Positives = 70/152 (46%), Gaps = 14/152 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +L+ YCG G L +A H V VE+ ++E A+ N N NN V ++E Sbjct: 311 VLDTYCGIGTIGLYMAPHAKHVYGVEVVPSAIEDAQKNATINQCNNTTFVCGKAEEVILQ 370 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330 + + + + VDPPR G D+ + ++ P I+YISCNP + R Sbjct: 371 WKAQ------------GIKPDVVMVDPPRKGCDETFIQTLLTLEPKRIVYISCNPATQQR 418 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLL 362 D +L+ + +E + D FP T H+E L Sbjct: 419 DALLLAEKYQLEEVTPVDMFPQTTHVETVALF 450 >gi|226310579|ref|YP_002770473.1| 23S rRNA (uracil-5-)-methyltransferase [Brevibacillus brevis NBRC 100599] gi|226093527|dbj|BAH41969.1| probable 23S rRNA (uracil-5-)-methyltransferase [Brevibacillus brevis NBRC 100599] Length = 460 Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 51/162 (31%), Positives = 74/162 (45%), Gaps = 16/162 (9%) Query: 208 GIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265 G+ G +L+LYCG G L LA + V +E+ +VE A N N N Sbjct: 311 GLTGKELVLDLYCGTGTIGLWLAPYAREVRGIELIPEAVEDANRNAERNQAANASF---- 366 Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISC 323 R E + R + VDPPR+GLDDA + ++ P I+Y+SC Sbjct: 367 -----HVGRAEVLMPKWAK---QGTRPDVVVVDPPRTGLDDALIRSLLDVLPKKIVYVSC 418 Query: 324 NPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 NP +L +D+ L + + + D FP+T H+E LL K Sbjct: 419 NPSTLAKDVGKLMQRYELVSVQPVDMFPHTAHVESVTLLTLK 460 >gi|206968113|ref|ZP_03229069.1| RNA methyltransferase, TrmA family [Bacillus cereus AH1134] gi|206737033|gb|EDZ54180.1| RNA methyltransferase, TrmA family [Bacillus cereus AH1134] Length = 459 Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 79/374 (21%), Positives = 161/374 (43%), Gaps = 44/374 (11%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQ------IFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63 Y++QL +K D + Q + +++ + P HYR +++ + + + ++ Sbjct: 96 YKEQLNQKRDIVVQAFEKYMKNSMEEKIRPTLGMENPWHYRNKSQLQVGRKDEKVITGLY 155 Query: 64 DQQTKERMRIDYFM-------PGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTS-QSD 115 Q + + + I + M + ++ ++ ++ +I E + + I T+ Q+ Sbjct: 156 KQNSHQLIDIAHCMIQHKATNEATKVVRRILEKLNVSIYNEKKQKGLVRTIVTRTAVQTG 215 Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175 + VTLI + + ++ + A K +Q + + I + D+ +AG Sbjct: 216 EVQVTLITTKEELPNKEQFIAEVQKQMPAVKSIMQNVNWRKTSVI-----FGDKTFKLAG 270 Query: 176 RTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSL 225 + +I + + +F Q N V + A + GD +++ YCG G L Sbjct: 271 KEVIQETLGDLSFELSARAFFQLNPEQTVVLYNEAKKAA-ALTGDEKIVDAYCGVGTIGL 329 Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285 LA V +++ ++ AR N + N K ++++ +E Sbjct: 330 WLANDAAEVRGMDVIPEAIADARKNAKCHGFTNTKYEAGKAEQWLPKWVKE--------- 380 Query: 286 DIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCRDLSILSTTHTIER 343 +R I VDPPR+G DD + +++ P ++Y+SCNP SL RD+ L ++ +E Sbjct: 381 ---GWRPDVIVVDPPRTGCDDKLLETILKVKPKQVVYVSCNPSSLARDVQALMKSYEVEY 437 Query: 344 LALFDQFPYTRHME 357 + D FP+T H+E Sbjct: 438 VQPVDMFPHTAHVE 451 >gi|119773768|ref|YP_926508.1| 23S rRNA methyluridine methyltransferase [Shewanella amazonensis SB2B] gi|143582879|sp|A1S382|RUMB_SHEAM RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName: Full=23S rRNA(M-5-U747)-methyltransferase gi|119766268|gb|ABL98838.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Shewanella amazonensis SB2B] Length = 384 Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 45/156 (28%), Positives = 80/156 (51%), Gaps = 16/156 (10%) Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271 L +L+CG G F L A V +EI +++ A+ + AA ++N+ + S +F Sbjct: 236 SLWDLFCGVGGFGLHCANESLPVTGIEIEAEAIDCAKTSAAAMGLDNLSFAALDSTDFAM 295 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLC 329 + + + I V+PPR G+ + + A+ I+Y SCNP++L Sbjct: 296 GQQAQE-------------VPEVIIVNPPRRGIGEELCERLSAFGPRAIIYSSCNPETLA 342 Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 +DL+++S + I R+ LFD FP++ H E LL+++ Sbjct: 343 KDLALIS-GYRIARVQLFDMFPHSDHFEVLCLLLKE 377 >gi|154496443|ref|ZP_02035139.1| hypothetical protein BACCAP_00735 [Bacteroides capillosus ATCC 29799] gi|150274526|gb|EDN01603.1| hypothetical protein BACCAP_00735 [Bacteroides capillosus ATCC 29799] Length = 412 Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 91/381 (23%), Positives = 160/381 (41%), Gaps = 46/381 (12%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFRSE-PIHYRMRA-EFHIWHDGDDLYHIMFDQQT 67 YE+QL K +L +++ F P I E P HYR + W G +L ++ Q T Sbjct: 52 YEEQLKRKQAKLEELLGKFG-PVAPILGMEHPWHYRNKVISSFAWGPGKNLVSGIYAQGT 110 Query: 68 KERMRIDYFMPGSLLINALMIEMMAT---IRLEP--------LLRAKLFQIDYLTSQSDQ 116 + ++ + +++ + + R +P L+R L + T + Sbjct: 111 HRVVPVEQCLLHREVLDQAVAAVRQAAREFRYQPFDENRRTGLIRHVLCRHSLSTGE--- 167 Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLI----GRA---NKTKICLDRDYVDE 169 + L+ + R A R+++ A Q + G A ++ KI R Y+++ Sbjct: 168 VLAVLVTASPVLPGARAFAARVKELCPAIVTLAQNVNPRPGSAVLGDREKILYGRGYIED 227 Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVL 227 L + +R +SF Q N + +L + + G +L+ YCG G L Sbjct: 228 VLC----GVKFRIAPSSFYQINP-VQTEVLYSTAISAARLTGKERVLDAYCGVGTIGLSA 282 Query: 228 ARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDI 287 A H V+ VE+ + + A N AN++ N + + F M R + +D+ Sbjct: 283 AAHAGSVVGVELNRSAAACAVDNAKANNIRNARFRCGDAAAFLDGM-----AARGEQLDV 337 Query: 288 HSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCRDLSILSTTH-TIERL 344 +F+DPPR+G + + + P +YISCNP++ RDL L+ E + Sbjct: 338 -------VFLDPPRAGSTPVFLDALCRVSPARAVYISCNPETQRRDLEYLAARGWRAESI 390 Query: 345 ALFDQFPYTRHMECGVLLVRK 365 D FP+T H+E +L R+ Sbjct: 391 QGVDMFPHTEHIETVAVLTRR 411 >gi|227512910|ref|ZP_03942959.1| TrmA family tRNA (uracil-5-)-methyltransferase [Lactobacillus buchneri ATCC 11577] gi|227083910|gb|EEI19222.1| TrmA family tRNA (uracil-5-)-methyltransferase [Lactobacillus buchneri ATCC 11577] Length = 456 Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 52/179 (29%), Positives = 85/179 (47%), Gaps = 17/179 (9%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 NSF Q N + + + + + D+ ++ YCG G SL LA+ +V VEI + Sbjct: 282 NSFYQVNPIQTEKLYKLAIQKAQLNKDDIVIDAYCGIGTISLSLAKVVKKVYGVEIVPEA 341 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 +E A+ N N ++N K V ++E +L + I VDPPR G Sbjct: 342 IEDAKRNAHINKISNCKFVVAKAEE------------QLGKWQKAGLKPDVIVVDPPRKG 389 Query: 304 LDDATV-GMVQAYPH-ILYISCNPDSLCRDLSILST--THTIERLALFDQFPYTRHMEC 358 LD++ + + + P ++Y+SCNP +L RD + + + + DQFP T H+E Sbjct: 390 LDESLIESVAEMSPQRLIYVSCNPATLARDAKLFAEHGYQINQPIQPVDQFPQTVHVES 448 >gi|332159394|ref|YP_004424673.1| putative RNA methyltransferase [Pyrococcus sp. NA2] gi|331034857|gb|AEC52669.1| putative RNA methyltransferase [Pyrococcus sp. NA2] Length = 408 Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 52/175 (29%), Positives = 85/175 (48%), Gaps = 25/175 (14%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSF Q N+ ++++ V +G + +L++Y G G F + LA+ +V+ + + ++ Sbjct: 249 NSFFQTNSYQAINLVRKVSEFVEGEK--ILDMYSGVGTFGIYLAKRGMKVVGFDSNEFAI 306 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 E AR N+ N V E EF D + F T+ VDPPR+GL Sbjct: 307 EMARRNVEINEV-------------------EAEFFVGTDRAVEVKGFDTVIVDPPRAGL 347 Query: 305 DDATVGMV--QAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHME 357 V + + I+Y+SCNP + RD+ +L + IE + D FP+T H+E Sbjct: 348 HPKLVRRLNREKPDAIVYVSCNPKTFARDIKMLK--YKIEDIIALDMFPHTPHVE 400 >gi|87303686|ref|ZP_01086461.1| 23S rRNA methyltransferase/RumA [Synechococcus sp. WH 5701] gi|87281791|gb|EAQ73756.1| 23S rRNA methyltransferase/RumA [Synechococcus sp. WH 5701] Length = 462 Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 51/156 (32%), Positives = 75/156 (48%), Gaps = 19/156 (12%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G FSL LA RVL +E SVE AR N N +N + + + + A Sbjct: 315 IVDAYCGIGTFSLPLAAAGARVLGLEQQPSSVEQARLNAGLNGLNGLT---LEAADVALA 371 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCR 330 + E + +DPPR GL + + A P + Y+SCNP +L R Sbjct: 372 LPEALEG------------ADGLLLDPPRKGLPERVCEAILASPPERVAYLSCNPATLAR 419 Query: 331 DLSILSTTHTIE--RLALFDQFPYTRHMECGVLLVR 364 DL+ L+ T+ R+ D FP T+H+E +L R Sbjct: 420 DLARLTAAGTLRLLRVQPIDFFPQTQHVEALAVLER 455 >gi|212224096|ref|YP_002307332.1| 23S rRNA (uracil-5-)-methyltransferase [Thermococcus onnurineus NA1] gi|212009053|gb|ACJ16435.1| 23S rRNA (uracil-5-)-methyltransferase [Thermococcus onnurineus NA1] Length = 419 Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 61/202 (30%), Positives = 98/202 (48%), Gaps = 27/202 (13%) Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSL 225 Y+ ER+ + ++Y NSF Q N+ +L+ V G + +L+LY G G F + Sbjct: 243 YIRERI----KDVVYLIHPNSFFQTNSYALALLLKTVEGFADGER--VLDLYSGVGTFGV 296 Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285 LA+ V VE+ +VE AR N N V+ V V R ++ Sbjct: 297 WLAKRGFAVEGVELNPFAVEMARKNAELNGVDVVFKV-----------------GRAEET 339 Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMVQA-YPHILYISCNPDSLCRDL-SILSTTHTIER 343 I Y T+ VDPPR GL +A+ ++++ ++Y+SCNP + D + L + +E Sbjct: 340 SIGDY--DTVIVDPPRKGLKEASKLLIKSGVEGVVYVSCNPRAFKLDYENHLKKAYQVEE 397 Query: 344 LALFDQFPYTRHMECGVLLVRK 365 L D FP+T H+E ++L +K Sbjct: 398 AVLADMFPHTPHVEAVIMLEKK 419 >gi|14521283|ref|NP_126758.1| putative RNA methyltransferase [Pyrococcus abyssi GE5] gi|50401701|sp|Q9UZR7|Y1078_PYRAB RecName: Full=Uncharacterized RNA methyltransferase PYRAB10780 gi|5458501|emb|CAB49989.1| RNA methyltransferase, putative [Pyrococcus abyssi GE5] Length = 405 Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 54/181 (29%), Positives = 89/181 (49%), Gaps = 25/181 (13%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSF Q N+ V+++ V +G + +L++Y G G F + LA+ V + + ++ Sbjct: 248 NSFFQTNSYQAVNLVRKVSELVEGEK--ILDMYSGVGTFGIYLAKRGFNVKGFDSNEFAI 305 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 E AR N+ N+V+ EF D ++ F T+ VDPPR+GL Sbjct: 306 EMARRNVEINNVDA-------------------EFEVASDREVSVKGFDTVIVDPPRAGL 346 Query: 305 DDATVG-MVQAYPH-ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362 V + + P I+Y+SCNP++ RD+ +L + I+ + D FP+T H+E L Sbjct: 347 HPRLVKRLNREKPGVIVYVSCNPETFARDVKMLD--YRIDEIVALDMFPHTPHVELVAKL 404 Query: 363 V 363 V Sbjct: 405 V 405 >gi|330723828|gb|AEC46198.1| Uncharacterized RNA methyltransferase [Mycoplasma hyorhinis MCLD] Length = 363 Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 58/184 (31%), Positives = 92/184 (50%), Gaps = 20/184 (10%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 NSF Q N + H + ++ + +GD +L+LY G G SL++A+ +V+AVE K + Sbjct: 197 NSFYQVNKEVAQHAYQRIIDFVQ--EGDFVLDLYSGIGTISLLVAQKAKKVIAVEENKFA 254 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 + A +N N +NNV EF ++F+ L D TI VDP R G Sbjct: 255 HKDALFNQKINKINNVSFKNKEVFEFL------KDFDDLVD---------TIIVDPAREG 299 Query: 304 LDDATVG-MVQAYPH-ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVL 361 + A + +++ P I+Y+SCNP + D S+L + I + + F T H+E + Sbjct: 300 VQKAAIKEILRLNPKRIIYLSCNPATQAYDFSLLKHKYKIIFFEIHNMFVKTFHIENLIC 359 Query: 362 LVRK 365 L RK Sbjct: 360 LERK 363 >gi|167766442|ref|ZP_02438495.1| hypothetical protein CLOSS21_00948 [Clostridium sp. SS2/1] gi|167711851|gb|EDS22430.1| hypothetical protein CLOSS21_00948 [Clostridium sp. SS2/1] gi|291560880|emb|CBL39680.1| 23S rRNA m(5)U-1939 methyltransferase [butyrate-producing bacterium SSC/2] Length = 543 Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 63/231 (27%), Positives = 104/231 (45%), Gaps = 26/231 (11%) Query: 142 LHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEW 201 LH + + +A+K I +DY E + L ++ SF Q N + +L Sbjct: 243 LHTTNDSLADVVQADKIDILYGQDYFYEEIL----GLKFKISPFSFFQTNT-LGAEILYK 297 Query: 202 VLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259 G D + +LY G G + +LA +V+ VEI + +VEAA+ N N ++N Sbjct: 298 TARDFVGETKDKVIFDLYSGTGTIAQMLAPVAKKVVGVEIVEEAVEAAKVNAELNGLDNC 357 Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PH 317 + + + + + +F I +DPPR G+ + + + Sbjct: 358 EFIAGDVLKVVDELEDKPDF---------------IVLDPPRDGIHPKAIQKIIDFGVEQ 402 Query: 318 ILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLV-RKP 366 ++YISC P SL RDL + + + ++R DQFP T H+E VLL +KP Sbjct: 403 MVYISCKPTSLARDLEVFEAAGYKVKRATAVDQFPNTVHIETVVLLSQQKP 453 >gi|227523038|ref|ZP_03953087.1| TrmA family tRNA (uracil-5-)-methyltransferase [Lactobacillus hilgardii ATCC 8290] gi|227089856|gb|EEI25168.1| TrmA family tRNA (uracil-5-)-methyltransferase [Lactobacillus hilgardii ATCC 8290] Length = 456 Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 52/179 (29%), Positives = 84/179 (46%), Gaps = 17/179 (9%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 NSF Q N + + + + + D+ ++ YCG G SL LA+ +V VEI + Sbjct: 282 NSFYQVNPIQTEKLYKLAIQKAQLNKDDIVIDAYCGIGTISLSLAKVVKKVYGVEIVPEA 341 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 +E A+ N N ++N K V ++E +L + I VDPPR G Sbjct: 342 IEDAKRNAHINKISNCKFVVAKAEE------------QLGKWQKAGLKPDVIVVDPPRKG 389 Query: 304 LDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST--THTIERLALFDQFPYTRHMEC 358 LD++ + V + ++Y+SCNP +L RD + + + + DQFP T H+E Sbjct: 390 LDESLIESVAEMSLQRLIYVSCNPATLARDAKLFAEHGYQINQPIQPVDQFPQTVHVES 448 >gi|148549269|ref|YP_001269371.1| 23S rRNA 5-methyluridine methyltransferase [Pseudomonas putida F1] gi|148513327|gb|ABQ80187.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Pseudomonas putida F1] Length = 452 Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 58/182 (31%), Positives = 85/182 (46%), Gaps = 17/182 (9%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 F Q NA +N M+E LA Q D +L+L+CG GNF+L LAR V+AVE + Sbjct: 281 GDFVQVNAQVNTAMIEQALAWLA-PQADERVLDLFCGLGNFALPLARQAREVVAVEGVQA 339 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302 V+ A NNV R + +Q L + F + +DPPR Sbjct: 340 MVD---RAAANARNNNVHNARFFQADLSQP---------LAGTGWAAEGFSAVLLDPPRD 387 Query: 303 GLDDATVGMVQ-AYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGV 360 G + G+ + ++Y+SCNP +L RD +L + ++R + D FP T H+E Sbjct: 388 GAFEVVQGIARLKASRLVYVSCNPATLARDAQVLVGQGYRLKRAGILDMFPQTAHVEAMA 447 Query: 361 LL 362 L Sbjct: 448 LF 449 >gi|153809759|ref|ZP_01962427.1| hypothetical protein RUMOBE_00140 [Ruminococcus obeum ATCC 29174] gi|149833937|gb|EDM89017.1| hypothetical protein RUMOBE_00140 [Ruminococcus obeum ATCC 29174] Length = 462 Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 65/235 (27%), Positives = 110/235 (46%), Gaps = 27/235 (11%) Query: 137 RLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPN---AG 193 R+ +H + + ++++T+I +DY E L L +R SF QPN A Sbjct: 249 RIVGIMHILNDSLSDVVQSDETRILYGQDYFYETLL----GLKFRISTFSFFQPNSLAAE 304 Query: 194 INVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAA 253 + +++ + T G++ + +LY G G + +LA V+ VEI + +V AAR N Sbjct: 305 VLYNIVRDYIQNTSGME--VFDLYSGTGTIAQLLAPVAKEVIGVEIVEDAVAAARENAKL 362 Query: 254 NHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ 313 N ++N K + + LK +D + + I +DPPR G+ + + Sbjct: 363 NGLDNCKFIAG---------------DVLKVLDDLTEKPDVIVLDPPRDGIHPKALPKIL 407 Query: 314 AY--PHILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 +Y I+Y+SC SL RDL + L + +E+ DQF T E LLV++ Sbjct: 408 SYGVKRIVYVSCKATSLARDLEAFLQAGYRLEKACCVDQFCETVWTEAVALLVKE 462 >gi|332523114|ref|ZP_08399366.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus porcinus str. Jelinkova 176] gi|332314378|gb|EGJ27363.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus porcinus str. Jelinkova 176] Length = 451 Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 84/386 (21%), Positives = 155/386 (40%), Gaps = 54/386 (13%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFR-------SEPIHYRMRAEFHIWHDGDDLYHIM 62 Y +QL K D +RQ + FQ + F EP HYR + +F G ++ + Sbjct: 90 YPKQLDFKDDVIRQSLKKFQPQGFENFTIKHTIGMVEPWHYRAKLQFQTRSFGGKVHAGL 149 Query: 63 FDQQTKERMRIDYFMPGSLLINALM-------------------IEMMATIRLEPLLRAK 103 F + + + I+ + A++ I + T+ + + Sbjct: 150 FAEGSHRLISIENCLVQDSTTQAIINDIVCLLERHRIPIYNERHIAGLRTVMIRKGQSSG 209 Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLD-DAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162 Q+ ++TS+ + I L+ + + + + AI + + Y +T+I Sbjct: 210 QVQLIFVTSK-ELHIAPLVKELVANFEEIKTVAINYNRSKTSGLY-------GERTEIIW 261 Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNG 221 ++ ++E + L R +F Q N + V+ A + + D +++ YCG G Sbjct: 262 GKETINEDVLDYSFALSPR----AFYQLNPQQTEVLYSEVVKALEVSENDQIIDAYCGVG 317 Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281 A+H + ++I ++ A+ N A N +++ +E Sbjct: 318 TIGFAFAKHVKSIRGMDIIPEAIADAKKNAKAMGFTNTYYETGKAEDLIPKWYQE----- 372 Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTTH 339 YR I VDPPR+GLD+ + V Y ++Y+SCN +L RDL L+ + Sbjct: 373 -------GYRADAIIVDPPRTGLDERLLETVVKYQPEKMVYVSCNTSTLARDLVTLAKFY 425 Query: 340 TIERLALFDQFPYTRHMECGVLLVRK 365 +E + D FP+T E V L +K Sbjct: 426 QVEYIQSVDMFPHTARTEAVVKLQKK 451 >gi|77460439|ref|YP_349946.1| 23S rRNA 5-methyluridine methyltransferase [Pseudomonas fluorescens Pf0-1] gi|91207809|sp|Q3K8E9|RUMA_PSEPF RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|77384442|gb|ABA75955.1| 23S rRNA m(5)U-1939 methyltransferase [Pseudomonas fluorescens Pf0-1] Length = 461 Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 58/188 (30%), Positives = 93/188 (49%), Gaps = 17/188 (9%) Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLA 236 L YR F Q NAG+N M+ L K + +L+L+CG GNF+L LA+ V+A Sbjct: 274 LAYR--PGDFIQVNAGVNEAMVAQALEWLKPTADERVLDLFCGLGNFALPLAKAAREVVA 331 Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296 VE + V+ A N A+N+++N K + + +Q L D + F + Sbjct: 332 VEGVQTMVDRAAANAASNNLHNTKFFQA---DLSQP---------LTDAEWIGNGFSAVL 379 Query: 297 VDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRD-LSILSTTHTIERLALFDQFPYTR 354 +DPPR G + + ++Y+SCNP +L RD + ++ + ++R + D FP T Sbjct: 380 LDPPRDGAFEVVRKLAALGAKRLVYVSCNPATLARDTVELIKQGYRLKRAGILDMFPQTA 439 Query: 355 HMECGVLL 362 H+E L Sbjct: 440 HVEAMALF 447 >gi|329767396|ref|ZP_08258921.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Gemella haemolysans M341] gi|328836085|gb|EGF85776.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Gemella haemolysans M341] Length = 458 Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 46/159 (28%), Positives = 79/159 (49%), Gaps = 23/159 (14%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G SL A+ +V +EI + +V AR N N++ N + + S++ Sbjct: 314 IIDAYCGIGTISLFAAKKVKKVYGIEIVEAAVLDARENAKNNNIENAEFLLGKSEDV--- 370 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD------ATVGMVQAYPHILYISCNPD 326 +K + + + + VDPPR G ++ A++G+ I+Y+SCNP Sbjct: 371 ---------IKKLISQNIKLDAVIVDPPRKGCEESFLRDLASMGI----EKIVYVSCNPS 417 Query: 327 SLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364 +L RD+ I+ S + + + D FP T H+E LL R Sbjct: 418 TLARDMEIMRSLGYKLGAVQPVDMFPGTYHVEAVTLLER 456 >gi|313500179|gb|ADR61545.1| RumA [Pseudomonas putida BIRD-1] Length = 452 Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 58/182 (31%), Positives = 85/182 (46%), Gaps = 17/182 (9%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 F Q NA +N M+E LA Q D +L+L+CG GNF+L LAR V+AVE + Sbjct: 281 GDFVQVNAQVNTAMIEQALAWLA-PQADERVLDLFCGLGNFALPLARQAREVVAVEGVQA 339 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302 V+ A NNV R + +Q L + F + +DPPR Sbjct: 340 MVD---RAAANARNNNVHNARFFQADLSQP---------LAGTGWAAEGFSAVLLDPPRD 387 Query: 303 GLDDATVGMVQ-AYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGV 360 G + G+ + ++Y+SCNP +L RD +L + ++R + D FP T H+E Sbjct: 388 GAFEVVQGIARLKASRLVYVSCNPATLARDAQVLVGQGYRLKRAGILDMFPQTAHVEAMA 447 Query: 361 LL 362 L Sbjct: 448 LF 449 >gi|323693629|ref|ZP_08107829.1| RNA methyltransferase [Clostridium symbiosum WAL-14673] gi|323502320|gb|EGB18182.1| RNA methyltransferase [Clostridium symbiosum WAL-14673] Length = 461 Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 65/234 (27%), Positives = 110/234 (47%), Gaps = 31/234 (13%) Query: 137 RLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINV 196 ++ LH + + + T++ +DY E L L +R SF Q N+ + Sbjct: 243 KMAGILHTKNDSLADAVKDEGTEVLYGKDYFFEELL----GLKFRISPFSFFQTNS-LGA 297 Query: 197 HML-----EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251 +L E+V TKG + +LY G G + +LA ++V+ VEI K +VEAA+ N Sbjct: 298 EVLYEKTREYV-GETKGKV--VFDLYSGTGTIAQILAPVAEKVVGVEIVKEAVEAAKENA 354 Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311 N ++N EF + LK +D + + + I +DPPR G+ + Sbjct: 355 RLNGLDNC--------EFIAG-------DVLKVVDELTDKPELIVLDPPRDGIHPKAIEK 399 Query: 312 VQAY--PHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLL 362 + + ++Y+SC P SL RDL IL + +E+ D FP T ++E +++ Sbjct: 400 IIGFGVERMVYVSCKPTSLARDLVILQENGYRVEKGCCVDMFPGTANVEVVIMM 453 >gi|154506231|ref|ZP_02042969.1| hypothetical protein RUMGNA_03773 [Ruminococcus gnavus ATCC 29149] gi|153793730|gb|EDN76150.1| hypothetical protein RUMGNA_03773 [Ruminococcus gnavus ATCC 29149] Length = 559 Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 68/236 (28%), Positives = 110/236 (46%), Gaps = 32/236 (13%) Query: 142 LHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEW 201 LH + + ++++T+I +DY E+L L ++ SF QPN+ E Sbjct: 246 LHILNDSLSDVVQSDETRIIYGQDYFYEKLL----NLEFKITPFSFFQPNS----RGAEV 297 Query: 202 VLAATKGIQGDL-----LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV 256 + + + GD+ +L+ G G + VLA +V+ VEI + +VEAA+ N A N + Sbjct: 298 LYSTVRDYIGDINDMTVFDLFSGTGTIAQVLAPVAKQVIGVEIIEEAVEAAKENAAHNGL 357 Query: 257 NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP 316 +N K + F L +I+ + I +DPPR G+ + + Y Sbjct: 358 SNCKFIAGDV------------FKVLDEIE---EKPDVIVLDPPRDGIHPKALPKILDYG 402 Query: 317 --HILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLV-RKPSG 368 I+YISC SL RDL ++ + + + DQF T H+E VLL +KP G Sbjct: 403 VDKIVYISCKVTSLARDLEMIQARGYEVVKSVAVDQFCQTVHVETVVLLSHKKPDG 458 >gi|260063140|ref|YP_003196220.1| RNA methyltransferase, TrmA family protein [Robiginitalea biformata HTCC2501] gi|88784709|gb|EAR15879.1| RNA methyltransferase, TrmA family protein [Robiginitalea biformata HTCC2501] Length = 509 Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 59/193 (30%), Positives = 93/193 (48%), Gaps = 18/193 (9%) Query: 178 LIYRQIENSFTQPNAGINVHMLEWV--LAATKGIQGDLLELYCGNGNFSLVLARHFDRVL 235 L +R SF Q N+ + + V LA G + + +LY G G + +AR V+ Sbjct: 327 LAFRITPKSFYQTNSRQAYALYKKVRELAGLTGKE-RVYDLYTGLGTIAQFVARQAREVI 385 Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE-FTQAMRREREFNRLKDIDIHSYRFKT 294 +E ++EAAR N A N ++N + KE FT EF ++ H R Sbjct: 386 GIEAVADAIEAARVNAAENGISNTRFFAGDMKELFTS------EF-----LETHG-RPDV 433 Query: 295 IFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPY 352 + DPPR G+ V +++ P I+Y+SCN + RDL+++ + + + D FP Sbjct: 434 VITDPPRDGMHKYVVAQLLEILPERIVYVSCNSATQARDLALMRDAYRVAHVQPVDMFPQ 493 Query: 353 TRHMECGVLLVRK 365 T H+E VLL R+ Sbjct: 494 THHVENIVLLERR 506 >gi|327461108|gb|EGF07441.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis SK1057] Length = 464 Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 50/155 (32%), Positives = 76/155 (49%), Gaps = 15/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +L+ Y G G L +A+ V VE+ +VE +R N A N + N V ++E Q Sbjct: 321 VLDAYSGIGTIGLSVAKQVKEVYGVEVIPEAVENSRKNAAINGITNASYVCAPAEEAIQ- 379 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCR 330 N LK+ + I VDPPR GL ++ + V P I YISCN ++ R Sbjct: 380 -------NWLKE----GIQADVILVDPPRKGLTESFIKASVSMEPKKITYISCNVATMAR 428 Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364 D+ + + ++++ D FP T H+EC LLV+ Sbjct: 429 DIKLYQELGYELKKVQPVDLFPQTHHVECVALLVK 463 >gi|318041410|ref|ZP_07973366.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Synechococcus sp. CB0101] Length = 453 Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 56/155 (36%), Positives = 73/155 (47%), Gaps = 18/155 (11%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +LE YCG G FSL LA VL +E+ SV AR N N + R + + Sbjct: 313 VLEAYCGIGTFSLPLAAAGLDVLGLELHHASVAQARANA---ERNALPTARFEIADVAAS 369 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCR 330 + H + + VDPPR GL + ++QA P I YISCNP +L R Sbjct: 370 LAE------------HLVWAEALLVDPPRKGLAPEVMDAILQAPPRRIAYISCNPATLAR 417 Query: 331 DLSILS-TTHTIERLALFDQFPYTRHMECGVLLVR 364 DL +LS + I + D FP T H+EC LL R Sbjct: 418 DLGLLSEAGYRIRPIQPVDFFPQTSHVECLALLER 452 >gi|195927220|pdb|2JJQ|A Chain A, The Crystal Structure Of Pyrococcus Abyssi Trna (Uracil-54, C5)-Methyltransferase In Complex With S-Adenosyl-L- Homocysteine Length = 425 Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 54/181 (29%), Positives = 89/181 (49%), Gaps = 25/181 (13%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSF Q N+ V+++ V +G + +L++Y G G F + LA+ V + + ++ Sbjct: 268 NSFFQTNSYQAVNLVRKVSELVEGEK--ILDMYSGVGTFGIYLAKRGFNVKGFDSNEFAI 325 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 E AR N+ N+V+ EF D ++ F T+ VDPPR+GL Sbjct: 326 EMARRNVEINNVDA-------------------EFEVASDREVSVKGFDTVIVDPPRAGL 366 Query: 305 DDATVG-MVQAYPH-ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362 V + + P I+Y+SCNP++ RD+ +L + I+ + D FP+T H+E L Sbjct: 367 HPRLVKRLNREKPGVIVYVSCNPETFARDVKMLD--YRIDEIVALDMFPHTPHVELVAKL 424 Query: 363 V 363 V Sbjct: 425 V 425 >gi|162447375|ref|YP_001620507.1| TrmA family RNA methyltransferase [Acholeplasma laidlawii PG-8A] gi|161985482|gb|ABX81131.1| RNA methyltransferase, TrmA family [Acholeplasma laidlawii PG-8A] Length = 460 Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 46/152 (30%), Positives = 83/152 (54%), Gaps = 16/152 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ Y G+ S +A+ +V A+EI + SV++A ++ N++ NV +++ +F +A Sbjct: 314 VIDAYAGSAPISHYIAKDVKKVYAIEIDQRSVQSAILSLKRNNIKNVTVIQ---SDFKKA 370 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCR 330 LK++++ + +F DPPR+GL T+ + Y ++Y SCNP +L + Sbjct: 371 ---------LKNLEVDT--IDAMFFDPPRTGLGYDTIKQILKYKPKKLIYGSCNPSTLAK 419 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLL 362 DL L T+ ++ L D FPYT +E LL Sbjct: 420 DLEDLLKTYELKSLIPMDMFPYTPLVESVSLL 451 >gi|253755011|ref|YP_003028151.1| RNA methyltransferase [Streptococcus suis BM407] gi|251817475|emb|CAZ55216.1| putative RNA methyltransferase [Streptococcus suis BM407] Length = 450 Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 45/156 (28%), Positives = 72/156 (46%), Gaps = 14/156 (8%) Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271 DL++ YCG G A+ V ++I ++E A+ N ++N ++E Sbjct: 307 DLIDAYCGVGTIGFAFAKKVKSVRGMDIIPEAIEDAKANAKRMGLSNTHYEAGKAEEIIP 366 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLC 329 +E YR + VDPPR+GLD+ + + Y ++Y+SCN +L Sbjct: 367 KWYQE------------GYRADALVVDPPRTGLDEKLLKTILNYKPAKMVYVSCNVSTLA 414 Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 RDL LS + +E + D FP+T E V L +K Sbjct: 415 RDLVELSKAYKVEYIQSVDMFPHTARTEAVVKLSKK 450 >gi|228963568|ref|ZP_04124721.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis serovar sotto str. T04001] gi|228796086|gb|EEM43541.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis serovar sotto str. T04001] Length = 459 Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 80/379 (21%), Positives = 163/379 (43%), Gaps = 44/379 (11%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQ------IFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63 Y++QL +K D + Q + +++ + P HYR +++ + + + ++ Sbjct: 96 YKEQLNQKRDIVVQAFEKYMKNSMEEKIRPTLGMENPWHYRNKSQLQVGRKDEKVITGLY 155 Query: 64 DQQTKERMRIDYFM-------PGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTS-QSD 115 Q + + + I + M + ++ ++ ++ +I E + + I T+ Q+ Sbjct: 156 KQNSHQLIDIAHCMIQHKATNEATKVVRRILEKLNVSIYNEKKQKGLVRTIVTRTAVQTG 215 Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175 + VTLI + + ++ + A K +Q + + I + D+ +AG Sbjct: 216 EVQVTLITTKEELPNKEQFVAEVQKQMPAVKSIMQNVNWRKTSVI-----FGDKTFKLAG 270 Query: 176 RTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSL 225 + +I + + +F Q N + + + A + GD +++ YCG G L Sbjct: 271 KEVIQETLGDLSFELSARAFFQLNPEQTIVLYDEAKKAA-ALTGDEKIVDAYCGVGTIGL 329 Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285 LA V +++ ++ AR N + N K ++++ +E Sbjct: 330 WLANDAAEVRGMDVIPEAIADARKNAKRHGFTNTKYEAGKAEQWLPKWVKE--------- 380 Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMV-QAYP-HILYISCNPDSLCRDLSILSTTHTIER 343 +R I VDPPR+G DD + + + P ++Y+SCNP SL RD+ L ++ +E Sbjct: 381 ---GWRPDVIVVDPPRTGCDDKLLETILKVKPKQVVYVSCNPSSLARDVQALMKSYEVEY 437 Query: 344 LALFDQFPYTRHMECGVLL 362 + D FP+T H+E V L Sbjct: 438 VQPVDMFPHTAHVENVVRL 456 >gi|146318097|ref|YP_001197809.1| SAM-dependent methyltransferase related to tRNA (uracil-5-)-methyltransferase [Streptococcus suis 05ZYH33] gi|146320277|ref|YP_001199988.1| SAM-dependent methyltransferase related to tRNA (uracil-5-)-methyltransferase [Streptococcus suis 98HAH33] gi|253751287|ref|YP_003024428.1| RNA methyltransferase [Streptococcus suis SC84] gi|253753188|ref|YP_003026328.1| RNA methyltransferase [Streptococcus suis P1/7] gi|145688903|gb|ABP89409.1| SAM-dependent methyltransferase related to tRNA (uracil-5-)-methyltransferase [Streptococcus suis 05ZYH33] gi|145691083|gb|ABP91588.1| SAM-dependent methyltransferase related to tRNA (uracil-5-)-methyltransferase [Streptococcus suis 98HAH33] gi|251815576|emb|CAZ51159.1| putative RNA methyltransferase [Streptococcus suis SC84] gi|251819433|emb|CAR44912.1| putative RNA methyltransferase [Streptococcus suis P1/7] gi|292557857|gb|ADE30858.1| tRNA (uracil-5-)-methyltransferase [Streptococcus suis GZ1] gi|319757569|gb|ADV69511.1| tRNA (uracil-5-)-methyltransferase-like SAM-dependent methyltransferase [Streptococcus suis JS14] Length = 450 Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 45/156 (28%), Positives = 72/156 (46%), Gaps = 14/156 (8%) Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271 DL++ YCG G A+ V ++I ++E A+ N ++N ++E Sbjct: 307 DLIDAYCGVGTIGFAFAKKVKSVRGMDIIPEAIEDAKANAKRMGLSNTHYEAGKAEEIIP 366 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLC 329 +E YR + VDPPR+GLD+ + + Y ++Y+SCN +L Sbjct: 367 KWYQE------------GYRADALVVDPPRTGLDEKLLKTILNYKPAKMVYVSCNVSTLA 414 Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 RDL LS + +E + D FP+T E V L +K Sbjct: 415 RDLVELSKAYKVEYIQSVDMFPHTARTEAVVKLSKK 450 >gi|330832292|ref|YP_004401117.1| RNA methyltransferase, TrmA family [Streptococcus suis ST3] gi|329306515|gb|AEB80931.1| RNA methyltransferase, TrmA family [Streptococcus suis ST3] Length = 435 Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 45/156 (28%), Positives = 72/156 (46%), Gaps = 14/156 (8%) Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271 DL++ YCG G A+ V ++I ++E A+ N ++N ++E Sbjct: 292 DLIDAYCGVGTIGFAFAKKVKSVRGMDIIPEAIEDAKANAKRMGLSNTHYEAGKAEEIIP 351 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLC 329 +E YR + VDPPR+GLD+ + + Y ++Y+SCN +L Sbjct: 352 KWYQE------------GYRADALVVDPPRTGLDEKLLKTILDYKPAKMVYVSCNVSTLA 399 Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 RDL LS + +E + D FP+T E V L +K Sbjct: 400 RDLVELSKAYKVEYIQSVDMFPHTARTEAVVKLSKK 435 >gi|223932599|ref|ZP_03624599.1| RNA methyltransferase, TrmA family [Streptococcus suis 89/1591] gi|302023441|ref|ZP_07248652.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus suis 05HAS68] gi|223898709|gb|EEF65070.1| RNA methyltransferase, TrmA family [Streptococcus suis 89/1591] Length = 450 Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 45/156 (28%), Positives = 72/156 (46%), Gaps = 14/156 (8%) Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271 DL++ YCG G A+ V ++I ++E A+ N ++N ++E Sbjct: 307 DLIDAYCGVGTIGFAFAKKVKSVRGMDIIPEAIEDAKANAKRMGLSNTHYEAGKAEEIIP 366 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLC 329 +E YR + VDPPR+GLD+ + + Y ++Y+SCN +L Sbjct: 367 KWYQE------------GYRADALVVDPPRTGLDEKLLKTILDYKPAKMVYVSCNVSTLA 414 Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 RDL LS + +E + D FP+T E V L +K Sbjct: 415 RDLVELSKAYKVEYIQSVDMFPHTARTEAVVKLSKK 450 >gi|167032268|ref|YP_001667499.1| 23S rRNA 5-methyluridine methyltransferase [Pseudomonas putida GB-1] gi|166858756|gb|ABY97163.1| RNA methyltransferase, TrmA family [Pseudomonas putida GB-1] Length = 452 Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 58/182 (31%), Positives = 85/182 (46%), Gaps = 17/182 (9%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 F Q NA +N M+E LA Q D +L+L+CG GNF+L LAR V+AVE + Sbjct: 281 GDFVQVNAQVNTAMIEQALAWLA-PQADERVLDLFCGLGNFALPLARQAREVVAVEGVQA 339 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302 V+ A NNV R + +Q L + F + +DPPR Sbjct: 340 MVD---RAAANARNNNVHNARFFQADLSQP---------LAGTGWAAEGFSAVLLDPPRD 387 Query: 303 GLDDATVGMVQ-AYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGV 360 G + G+ + ++Y+SCNP +L RD +L + ++R + D FP T H+E Sbjct: 388 GAFEVVQGIARLKASRLVYVSCNPATLARDAQVLVGQGYRLKRAGILDMFPQTAHVEAMA 447 Query: 361 LL 362 L Sbjct: 448 LF 449 >gi|71017959|ref|XP_759210.1| hypothetical protein UM03063.1 [Ustilago maydis 521] gi|46098831|gb|EAK84064.1| hypothetical protein UM03063.1 [Ustilago maydis 521] Length = 574 Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 64/222 (28%), Positives = 105/222 (47%), Gaps = 31/222 (13%) Query: 162 LDRDYV-DERLTVAGRTLI--YRQIENSFTQPNAGINVHMLEWV---LAATKGIQGD--- 212 LD + V D + TV R L + +F Q N I +L++V + + G+ Sbjct: 364 LDTEVVTDHKATVKERVLTTKFESPAGTFFQNNRSILPSLLDYVREAITSASSTTGEDSA 423 Query: 213 ----LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268 L++ YCG+G FSL LA F V VEI+ S++ A N N + N K + ++++ Sbjct: 424 QARYLVDAYCGSGLFSLCLASLFREVSGVEISSESIKYATKNAELNGITNTKFLAGNAED 483 Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPD 326 F +++ + T+ +DPPR G D + +V P HI+Y+SCN Sbjct: 484 I---------FGKIE----YPADKTTVIIDPPRRGCDQEFIRQLVNLAPKHIVYVSCNVH 530 Query: 327 SLCRDLSILSTT---HTIERLALFDQFPYTRHMECGVLLVRK 365 + RD+ L + + I+ + D FP T H+E +L R+ Sbjct: 531 TQARDVGQLISKDPRYKIKSVRGADLFPQTHHVEGVAVLERR 572 >gi|228899170|ref|ZP_04063440.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis IBL 4222] gi|228860439|gb|EEN04829.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis IBL 4222] Length = 459 Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 80/379 (21%), Positives = 164/379 (43%), Gaps = 44/379 (11%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQ------IFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63 Y++QL +K D + Q + +++ + P HYR +++ + + + ++ Sbjct: 96 YKEQLNQKRDIVVQAFEKYMKNSMEEKIRPTLGMENPWHYRNKSQLQVGRKDEKVITGLY 155 Query: 64 DQQTKERMRIDYFM-------PGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTS-QSD 115 Q + + + I + M + ++ ++ ++ +I E + + I T+ Q+ Sbjct: 156 KQNSHQLIDIAHCMIQHKATNEATKVVRRILEKLNVSIYNEKKQKGLVRTIVTRTAVQTG 215 Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175 + VTLI + + ++ + A K +Q + + I + D+ +AG Sbjct: 216 EVQVTLITTKEELPNKEQFVAEVQKQIPAVKSIMQNVNWRKTSVI-----FGDKTFKLAG 270 Query: 176 RTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSL 225 + +I + + +F Q N + + + A + GD +++ YCG G L Sbjct: 271 KEVIQETLGDLSFELSARAFFQLNPEQTIVLYDEAKKAA-ALTGDEKIVDAYCGVGTIGL 329 Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285 LA V +++ ++ AR N + N K ++++ +E Sbjct: 330 WLANDAAEVRGMDVIPEAIADARKNAKRHGFTNTKYEAGKAEQWLPKWVKE--------- 380 Query: 286 DIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCRDLSILSTTHTIER 343 +R I VDPPR+G DD + +++ P ++Y+SCNP SL RD+ L ++ +E Sbjct: 381 ---GWRPDVIVVDPPRTGCDDKLLETILKVKPKQVVYVSCNPSSLARDVQALMKSYEVEY 437 Query: 344 LALFDQFPYTRHMECGVLL 362 + D FP+T H+E V L Sbjct: 438 VQPVDMFPHTAHVENVVRL 456 >gi|120436238|ref|YP_861924.1| tRNA (uracil-5-)-methyltransferase [Gramella forsetii KT0803] gi|117578388|emb|CAL66857.1| tRNA (uracil-5-)-methyltransferase [Gramella forsetii KT0803] Length = 469 Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 60/216 (27%), Positives = 100/216 (46%), Gaps = 26/216 (12%) Query: 163 DRDYVDERLTVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGDLL 214 D Y E + GR I+ ++E SF Q N+ + L + ++GD L Sbjct: 267 DTIYDQEVICFKGRDHIFEEMEGLKFKINAKSFYQTNSE-QAYNLYKITRDYANLKGDEL 325 Query: 215 --ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI-VRMSSKEFTQ 271 +LY G G + +A++ +V+ VE +++ A+ N N + NV+ V K FT+ Sbjct: 326 VYDLYTGTGTIAQFVAKNAKKVIGVEAVPEAIKDAKENAERNKIQNVEFYVGDMKKVFTE 385 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL-DDATVGMVQAYPH-ILYISCNPDSLC 329 + I+ H + I DPPR G+ D ++ P I+Y+SCN + Sbjct: 386 SF-----------INKHGHP-DVIITDPPRDGMHKDVVAQIIGILPERIVYVSCNSATQA 433 Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 RDLS+L + + ++ D FP T H+E V L ++ Sbjct: 434 RDLSLLDEHYKVTQIQAVDMFPQTHHVENVVCLEKR 469 >gi|295094140|emb|CBK83231.1| 23S rRNA m(5)U-1939 methyltransferase [Coprococcus sp. ART55/1] Length = 550 Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 47/155 (30%), Positives = 75/155 (48%), Gaps = 18/155 (11%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + +LY G G + +LA +V+ VEI + +VEAAR N N ++N + + + Sbjct: 317 IFDLYSGTGTIAQLLAPVAKKVIGVEIVEEAVEAARVNAELNGLDNCEFIAGDVLKVIDE 376 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCR 330 + + +F I +DPPR G++ + + Y ++YISC P SL R Sbjct: 377 IEEKPDF---------------IVLDPPRDGINPKALTKIINYGVNELVYISCKPTSLAR 421 Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364 DL L + + + DQFP T H+E VLL + Sbjct: 422 DLVTLQENGYYVTKACAVDQFPGTVHVETVVLLSK 456 >gi|325915832|ref|ZP_08178131.1| 23S rRNA m(5)U-1939 methyltransferase [Xanthomonas vesicatoria ATCC 35937] gi|325537953|gb|EGD09650.1| 23S rRNA m(5)U-1939 methyltransferase [Xanthomonas vesicatoria ATCC 35937] Length = 418 Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 58/192 (30%), Positives = 90/192 (46%), Gaps = 18/192 (9%) Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLA 236 L +R ++ F Q NA +N M+ LA D +L+L+CG GNF+L LAR V+ Sbjct: 241 LAFRPLD--FIQVNASLNQKMIAHALALLDARPDDRVLDLFCGLGNFTLPLARTVREVVG 298 Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296 VE V A+ N N ++N + + + TQ R + F + Sbjct: 299 VEGDAGLVARAKENAQRNGLDNAQFY---AADLTQDQRNAPWMRQ---------GFDKLL 346 Query: 297 VDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDLSILSTTH--TIERLALFDQFPYT 353 +DPPRSG + + ++ + I+Y+SC+P SL RD L T+ D FP+T Sbjct: 347 LDPPRSGALEVLQQLPLKKFDRIVYVSCHPGSLARDAGYLVNEQGFTLVSAGAMDMFPHT 406 Query: 354 RHMECGVLLVRK 365 H+E + R+ Sbjct: 407 AHVESIAVFERR 418 >gi|315145231|gb|EFT89247.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX2141] gi|315161930|gb|EFU05947.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX0645] Length = 468 Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 46/155 (29%), Positives = 79/155 (50%), Gaps = 15/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G L LA+ +V +E+ + +V+ A NN K+ + + FT Sbjct: 323 VVDAYCGIGTIGLNLAQDAKQVYGIEVIEEAVKDAE--------NNAKLNNIENATFTAG 374 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330 + E L + + + + VDPPR GLD V +++ P I+Y+SCNP +L R Sbjct: 375 LAEE----LLPKLVENGLQPDVVVVDPPRKGLDGQLVNTLIETQPERIVYVSCNPATLAR 430 Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364 D+++L+ + + + D FP T H+E LL + Sbjct: 431 DIALLTEGGYEAKEIQPVDNFPQTTHIESVTLLTK 465 >gi|300766632|ref|ZP_07076549.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|300495732|gb|EFK30883.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus plantarum subsp. plantarum ATCC 14917] Length = 457 Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 53/164 (32%), Positives = 81/164 (49%), Gaps = 18/164 (10%) Query: 208 GIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265 G+ G+ +++ Y G G SL +A+H +V VEI +++ AR N N + N V S Sbjct: 305 GLTGNETVIDAYSGIGTISLTMAQHAKQVYGVEIVPAAIDNARQNADKNGITNATFVLDS 364 Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD-DATVGMVQAYPH-ILYISC 323 ++ +AM + + D+ I VDPPR GLD D + P ++YISC Sbjct: 365 AE---KAMAKWQADGVKPDV---------IVVDPPRKGLDADFIKSAGEMAPKRVVYISC 412 Query: 324 NPDSLCRDLSILS--TTHTIERLALFDQFPYTRHMECGVLLVRK 365 NP +L RD+ + H + DQFP T H+E +L R+ Sbjct: 413 NPSTLVRDVQRFAEYGYHISAPVQPVDQFPQTPHIESVTVLERE 456 >gi|160894134|ref|ZP_02074912.1| hypothetical protein CLOL250_01688 [Clostridium sp. L2-50] gi|156864167|gb|EDO57598.1| hypothetical protein CLOL250_01688 [Clostridium sp. L2-50] Length = 463 Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 67/222 (30%), Positives = 101/222 (45%), Gaps = 32/222 (14%) Query: 157 KTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD---- 212 K + RDY++E + L ++ SF Q N E + + + GD Sbjct: 264 KVTLLYGRDYIEEEVL----GLHFQISPFSFFQ----TNTKSAERLYSKAREYAGDTKDK 315 Query: 213 -LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271 + +LY G G + +L+ +V+ VEI + +VEAAR N +N ++N EF Sbjct: 316 LIFDLYSGTGTIAQMLSPVASKVIGVEIVEEAVEAARENAKSNGLDNC--------EFIA 367 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLC 329 + LK ID + I +DPPR G++ + + Y I+YISC P SL Sbjct: 368 G-------DVLKVIDTIEEKPDLIILDPPRDGINPKALLKIINYGVDEIVYISCKPTSLA 420 Query: 330 RDLSILST-THTIERLALFDQFPYTRHMECGVLLVRKPSGWH 370 RDL L + +++ DQF T H+E VLL K S H Sbjct: 421 RDLVTLQEHGYYVKKACAVDQFVNTGHVETCVLL-EKTSATH 461 >gi|319939659|ref|ZP_08014018.1| TrmA family TRNA methyltransferase [Streptococcus anginosus 1_2_62CV] gi|319811248|gb|EFW07554.1| TrmA family TRNA methyltransferase [Streptococcus anginosus 1_2_62CV] Length = 452 Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 46/155 (29%), Positives = 71/155 (45%), Gaps = 14/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L++ YCG G A+ + ++I ++E A+ N A NN +++ Sbjct: 308 LIDAYCGVGTIGFAFAKRVKSLRGMDIIPEAIEDAKRNAARLGFNNTHYETGTAESIIPR 367 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCR 330 +E YR + VDPPR+GLDD + + Y ++Y+SCN SL R Sbjct: 368 WYKE------------GYRADALIVDPPRTGLDDKLLETIVRYAPKKMVYVSCNVSSLAR 415 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 DL LS + + + D FP+T E V L+RK Sbjct: 416 DLVQLSKVYDVHYIQSVDMFPHTARTEAVVKLIRK 450 >gi|300861732|ref|ZP_07107812.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TUSoD Ef11] gi|300848257|gb|EFK76014.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TUSoD Ef11] Length = 457 Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 46/155 (29%), Positives = 79/155 (50%), Gaps = 15/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G L LA+ +V +E+ + +V+ A NN K+ + + FT Sbjct: 312 VVDAYCGIGTIGLNLAQDAKQVYGIEVIEEAVKDAE--------NNAKLNNIENATFTAG 363 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330 + E L + + + + VDPPR GLD V +++ P I+Y+SCNP +L R Sbjct: 364 LAEE----LLPKLVENGLQPDVVVVDPPRKGLDGQLVNTLIETQPERIVYVSCNPATLAR 419 Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364 D+++L+ + + + D FP T H+E LL + Sbjct: 420 DIALLTEGGYEAKEIQPVDNFPQTTHIESVTLLTK 454 >gi|90580331|ref|ZP_01236138.1| 23S rRNA (uracil-5-)-methyltransferase [Vibrio angustum S14] gi|90438633|gb|EAS63817.1| 23S rRNA (uracil-5-)-methyltransferase [Vibrio angustum S14] Length = 450 Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 59/181 (32%), Positives = 87/181 (48%), Gaps = 15/181 (8%) Query: 187 FTQPNAGINVHMLEWVLAATK-GIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 F Q N +NV M+E + Q +L+L+CG GNFSL LAR V+ VE V Sbjct: 271 FIQVNRDVNVKMVEQAINWLDIQPQDRVLDLFCGLGNFSLPLARRAKAVVGVEGVDEMVA 330 Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD 305 A N AAN ++N + + E + +E +F I +DP R+G Sbjct: 331 RATANAAANGLDNATFYQANLDEDVTKLVWAQE------------QFDKILLDPARAGAA 378 Query: 306 DATVGMVQAYP-HILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVLLV 363 +V P ++Y+SCNP +L RD +L + + RL + D FP+T H+E L V Sbjct: 379 GVMQHIVNLAPSKVVYVSCNPATLARDSQMLLQQGYKLARLGMMDMFPHTGHLESMTLFV 438 Query: 364 R 364 + Sbjct: 439 K 439 >gi|28377929|ref|NP_784821.1| RNA methyltransferase [Lactobacillus plantarum WCFS1] gi|50401551|sp|Q88XP4|Y1151_LACPL RecName: Full=Uncharacterized RNA methyltransferase lp_1151 gi|28270763|emb|CAD63668.1| RNA methyltransferase [Lactobacillus plantarum WCFS1] Length = 457 Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 53/164 (32%), Positives = 81/164 (49%), Gaps = 18/164 (10%) Query: 208 GIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265 G+ G+ +++ Y G G SL +A+H +V VEI +++ AR N N + N V S Sbjct: 305 GLTGNETVIDAYSGIGTISLTMAQHAKQVYGVEIVPAAIDNARQNADKNGITNATFVLDS 364 Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD-DATVGMVQAYPH-ILYISC 323 ++ +AM + + D+ I VDPPR GLD D + P ++YISC Sbjct: 365 AE---KAMAKWQADGVKPDV---------IVVDPPRKGLDADFIKSAGEMAPKRVVYISC 412 Query: 324 NPDSLCRDLSILS--TTHTIERLALFDQFPYTRHMECGVLLVRK 365 NP +L RD+ + H + DQFP T H+E +L R+ Sbjct: 413 NPSTLVRDVQRFAEYGYHISAPVQPVDQFPQTPHIESVTVLERE 456 >gi|332162249|ref|YP_004298826.1| 23S rRNA methyluridine methyltransferase [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325666479|gb|ADZ43123.1| 23S rRNA methyluridine methyltransferase [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330860383|emb|CBX70693.1| 23S rRNA (uracil-5-)-methyltransferase rumB [Yersinia enterocolitica W22703] Length = 375 Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 49/156 (31%), Positives = 79/156 (50%), Gaps = 18/156 (11%) Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271 + +L+CG G F L A R+ +EI+ ++ AR + + NV + S +F Sbjct: 236 SMWDLFCGVGGFGLHCADTETRLTGIEISAEAIACARQSADQLGLKNVTFAALDSTQFAT 295 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLC 329 A E + +L + V+PPR G+ + Q P ILY SCN +++ Sbjct: 296 A---ETQVPQL------------VLVNPPRRGIGAQLCEYLSQMAPQFILYSSCNAETMA 340 Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 +D+S+L T + IER+ LFD FP+T H E LL+++ Sbjct: 341 KDISLL-TDYRIERVQLFDMFPHTAHYEVLTLLIKR 375 >gi|319954120|ref|YP_004165387.1| 23S rRNA m(5)u-1939 methyltransferase [Cellulophaga algicola DSM 14237] gi|319422780|gb|ADV49889.1| 23S rRNA m(5)U-1939 methyltransferase [Cellulophaga algicola DSM 14237] Length = 472 Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 60/216 (27%), Positives = 94/216 (43%), Gaps = 26/216 (12%) Query: 163 DRDYVDERLTVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGDLL 214 D Y E + AGR I+ ++E SF Q N+ + L + G+ G+ L Sbjct: 269 DTIYDQEIVCFAGRDHIFEEMEGLKFKINAKSFYQTNSD-QAYELYKITRDFAGLTGNEL 327 Query: 215 --ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE-FTQ 271 +LY G G + +A+ +V+ +E ++E A+ N N + N K F + Sbjct: 328 VYDLYTGTGTIAQFVAKKAKKVVGIEAVPEAIEDAKANAIFNKIENTSFFAGDMKNIFNE 387 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLC 329 RE N DI I DPPR G+ V + A ++Y+SCN + Sbjct: 388 EFIRE---NGTPDI---------IITDPPRDGMHKDVVAQILAIAPQKVVYVSCNSATQA 435 Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 RDL ++ + I + D FP T H+E VLL ++ Sbjct: 436 RDLELMKDDYKITKTQAVDMFPQTHHVENVVLLEKR 471 >gi|313123184|ref|YP_004033443.1| tRNA (uracil-5-)-methyltransferase related enzyme [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312279747|gb|ADQ60466.1| tRNA (Uracil-5-)-methyltransferase related enzyme [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 451 Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 56/203 (27%), Positives = 92/203 (45%), Gaps = 20/203 (9%) Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFS 224 Y+D+++ L + SF Q N+ + + + + DL+ + Y G G Sbjct: 261 YIDDKIG----DLTFEISPQSFFQINSLQTPRLYKLAIDQAGLTKDDLIVDAYSGIGTIG 316 Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284 L A++ V VE+ K +V+ A+ N N ++N K ++E E Sbjct: 317 LSAAKYVKEVRGVEVVKAAVKDAKNNARLNQIHNAKYYAGKAEELMPKWAAE-------- 368 Query: 285 IDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCRDLSIL-STTHTI 341 + IFVDPPR GL + V+ P ++YISCNP +L RD+ +L +T Sbjct: 369 ----GLKTDVIFVDPPRKGLTKEFIDAAVKTGPKKVVYISCNPATLVRDMQLLMKAGYTT 424 Query: 342 ERLALFDQFPYTRHMECGVLLVR 364 + ++ D FP T H+E +L R Sbjct: 425 DLVSPVDMFPQTPHVESVTVLER 447 >gi|50292305|ref|XP_448585.1| hypothetical protein [Candida glabrata CBS 138] gi|49527897|emb|CAG61548.1| unnamed protein product [Candida glabrata] Length = 585 Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 49/160 (30%), Positives = 78/160 (48%), Gaps = 21/160 (13%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L++ YCG+G FS+ ++ D+V+ VEI+ SV A N N V N K + +++ ++ Sbjct: 438 LVDAYCGSGLFSICSSKGVDKVIGVEISADSVSFAERNAKNNGVENCKFIVGKAEKLFES 497 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330 + D S ++ +DPPR G D+ + + AY I+YISCN S R Sbjct: 498 I----------DTPADS---TSVILDPPRKGCDELFLKQLAAYNPARIVYISCNVHSQAR 544 Query: 331 DLSIL------STTHTIERLALFDQFPYTRHMECGVLLVR 364 D+ + +E + FD FP T H+E +L R Sbjct: 545 DVQYFLKDTPEGKNYRVESIRGFDFFPQTHHVESVCVLSR 584 >gi|119774169|ref|YP_926909.1| 23S rRNA 5-methyluridine methyltransferase [Shewanella amazonensis SB2B] gi|143581857|sp|A1S4D3|RUMA_SHEAM RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|119766669|gb|ABL99239.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Shewanella amazonensis SB2B] Length = 443 Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 56/195 (28%), Positives = 91/195 (46%), Gaps = 24/195 (12%) Query: 174 AGRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFS 224 +G L Y Q++ +F Q N +N M+ + G+ +L+L+CG GNFS Sbjct: 253 SGHELPYYQLDGLKLAFAPGNFIQVNGEVNQAMVAQAMNWLDVHAGERVLDLFCGVGNFS 312 Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284 L LA+ V+ VE V A+ N A N ++N+ + ++ + E ++ Sbjct: 313 LPLAKQGAEVVGVEGVPEMVAQAKQNAAINGLDNLSFY---CADLSEDLAAEPWLGKI-- 367 Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDLSIL-STTHTIE 342 + +DP R+G ++ + + P +LY+SCNP SL RD +L + + Sbjct: 368 --------DKLLLDPARAGAYESLKWLKKMKPAKVLYVSCNPASLARDSVLLFEAGYQLT 419 Query: 343 RLALFDQFPYTRHME 357 RL L D FP T H E Sbjct: 420 RLGLVDMFPQTHHSE 434 >gi|240103925|ref|YP_002960234.1| 23S rRNA (uracil-5-)-methyltransferase (rumA) [Thermococcus gammatolerans EJ3] gi|239911479|gb|ACS34370.1| 23S rRNA (uracil-5-)-methyltransferase (rumA) [Thermococcus gammatolerans EJ3] Length = 421 Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 68/213 (31%), Positives = 95/213 (44%), Gaps = 35/213 (16%) Query: 165 DYVDERLTVAGRTLIYRQIE--------NSFTQPNAGINVHMLEWVLAATKGIQGD--LL 214 D E L VAG I +IE NSF Q N+ + LE +L A + +L Sbjct: 231 DPRGEPLHVAGSQFIRERIEDVVYLIHPNSFFQTNS----YALELLLRAVENFTDGERVL 286 Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274 +LY G G F + LA+ V VE+ +VE A N N VN Sbjct: 287 DLYSGVGTFGVYLAKRGFTVEGVEVNPFAVEMANRNTEINGVNA---------------- 330 Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDL- 332 + R ++ I Y T+ VDPPR GL + +V+ ++Y+SCNP + D Sbjct: 331 -QFRVGRAEETPIGDY--DTVIVDPPRKGLRETAELLVKGGIERVVYVSCNPKAFRLDYK 387 Query: 333 SILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 + L + IE L D FP+T H+E V LVR+ Sbjct: 388 NHLRKAYRIEDAVLVDMFPHTPHVEAVVELVRR 420 >gi|227893050|ref|ZP_04010855.1| TrmA family tRNA (uracil-5-)-methyltransferase [Lactobacillus ultunensis DSM 16047] gi|227865163|gb|EEJ72584.1| TrmA family tRNA (uracil-5-)-methyltransferase [Lactobacillus ultunensis DSM 16047] Length = 450 Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 61/218 (27%), Positives = 96/218 (44%), Gaps = 24/218 (11%) Query: 157 KTKICLD-RDYV---DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD 212 KT + L +DYV D+ +T L +R SF Q N+ + + D Sbjct: 246 KTNVILGQKDYVVYGDDHITDQIGNLKFRISPKSFFQINSLQTPRLYNLAIEKADLKPSD 305 Query: 213 LL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271 ++ + Y G G L +A+H V +E+ +V A N N+++N K V ++E Sbjct: 306 VVVDAYSGIGTIGLSVAKHVKAVRGMEVIADAVRDANANAKLNNISNAKYVTGKAEEIMP 365 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD----DATVGMVQAYPHILYISCNPDS 327 +E + +FVDPPR GL DATV ++YISCNP + Sbjct: 366 HWAKE------------GLKTDVVFVDPPRKGLTPEFIDATVKT--GPKKVVYISCNPAT 411 Query: 328 LCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364 + RDL + + +R+ D FP T H+E +L + Sbjct: 412 MIRDLQLFKEQGYQFDRIDPVDMFPQTPHVEAVTILTK 449 >gi|194751718|ref|XP_001958172.1| GF10790 [Drosophila ananassae] gi|190625454|gb|EDV40978.1| GF10790 [Drosophila ananassae] Length = 613 Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 50/167 (29%), Positives = 82/167 (49%), Gaps = 20/167 (11%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 LL++ CG G +L A+H +V+ VEI ++ A +N N + N K +S +F ++ Sbjct: 409 LLDICCGTGTITLSFAKHCRKVMGVEIVPDAIRDAEFNAMVNGITNSKFYTGNSDDFIKS 468 Query: 273 MRRER--EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ---AYPHILYISCNPDS 327 M R+ E K +D+ VDPPR+GL + ++ ++ A ++Y+SCNP S Sbjct: 469 MVRDALYEQEPGKPVDL------VALVDPPRAGLHNRSITAIRSASAIKRLIYVSCNPHS 522 Query: 328 LCR---DLSILSTTH------TIERLALFDQFPYTRHMECGVLLVRK 365 R DL+ + H + D FP+T H E +L R+ Sbjct: 523 AKRNFIDLARPESKHYKGEPFYPKSAVAVDMFPHTTHTELIILFERE 569 >gi|154503473|ref|ZP_02040533.1| hypothetical protein RUMGNA_01297 [Ruminococcus gnavus ATCC 29149] gi|153795573|gb|EDN77993.1| hypothetical protein RUMGNA_01297 [Ruminococcus gnavus ATCC 29149] Length = 464 Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 54/162 (33%), Positives = 81/162 (50%), Gaps = 9/162 (5%) Query: 209 IQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266 ++GD + +LYCG G SL LA++ +V VEI ++E AR N N + N K + Sbjct: 305 LKGDETVWDLYCGIGTISLFLAQNAKQVYGVEIIPQAIEDARKNAQINGIENAKFYVGKA 364 Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCN 324 +E + K I VDPPR G +++ + MVQ P I+Y+SC+ Sbjct: 365 EEVLPGYYA----DYAKAHPGEQAHADVIVVDPPRKGCEESLLETMVQMQPERIVYVSCD 420 Query: 325 PDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRK 365 +L RDL L + + ++ DQF T H+E VLL R+ Sbjct: 421 SATLARDLKYLCGNGYELVKVRAVDQFSQTVHVETCVLLQRR 462 >gi|28212064|ref|NP_783008.1| tRNA (uracil-5-) -methyltransferase [Clostridium tetani E88] gi|50401759|sp|Q891A0|Y2481_CLOTE RecName: Full=Uncharacterized RNA methyltransferase CTC_02481 gi|28204507|gb|AAO36945.1| tRNA (uracil-5-) -methyltransferase [Clostridium tetani E88] Length = 460 Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 45/159 (28%), Positives = 80/159 (50%), Gaps = 17/159 (10%) Query: 209 IQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266 ++GD + + YCG G SL L++ +V VEI ++E+A+ N N+V+NV + S Sbjct: 306 LKGDEVVFDAYCGTGTISLFLSQKAKKVYGVEIVNEAIESAKLNARENNVDNVDFIVGES 365 Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCN 324 ++ + + + + VDPPR G + + + M + P I+Y+SC+ Sbjct: 366 EQIIPELIEK------------GIKADVVVVDPPRKGCEKSLLEAMAKMAPEKIVYVSCD 413 Query: 325 PDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLL 362 P +L RDL +L + ++ D F T H+E +L+ Sbjct: 414 PATLARDLGVLEELGYKTMKVQPVDMFSNTYHVETIILM 452 >gi|147677853|ref|YP_001212068.1| SAM-dependent methyltransferases [Pelotomaculum thermopropionicum SI] gi|146273950|dbj|BAF59699.1| SAM-dependent methyltransferases [Pelotomaculum thermopropionicum SI] Length = 470 Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 60/217 (27%), Positives = 100/217 (46%), Gaps = 26/217 (11%) Query: 155 ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWV--LAATKGIQGD 212 K++ R+++ +RL LI+R +SF Q N + + V AA G + Sbjct: 272 GKKSRCLAGREHIKDRLG----HLIFRISPSSFYQVNPVQTLVLYNKVQQYAALTGRE-T 326 Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ Y G G+ +L LA RV +E +V AR N A N + N + + + Sbjct: 327 VVDAYSGIGSIALFLAGRAKRVYGLEALPDAVADARKNAALNKITNAEFLTGKVESL--- 383 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD----DATVGMVQAYPHILYISCNPDSL 328 + + R + + +DPPR G +A V M P ++Y+SCNP +L Sbjct: 384 ---------IPILAAQGQRPEVVVLDPPRHGCGREVLEAVVQM--QVPRLVYVSCNPATL 432 Query: 329 CRDLSILS-TTHTIERLALFDQFPYTRHMECGVLLVR 364 RDL + + ++ + D FP+T H+EC VL+ R Sbjct: 433 ARDLRYFADNGYLVDEVQPVDMFPWTAHVECVVLMSR 469 >gi|205372478|ref|ZP_03225291.1| RNA methyltransferase-like protein [Bacillus coahuilensis m4-4] Length = 456 Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 52/164 (31%), Positives = 81/164 (49%), Gaps = 19/164 (11%) Query: 208 GIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265 G+ G+ +++ YCG G SL LA V VEI ++ A+ N N NV+ Sbjct: 306 GLTGNETVIDAYCGIGTISLFLAERAKHVYGVEIVPEAIVDAKRNAELNGFTNVEFEVGP 365 Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISC 323 +++ A ++R D+ + VDPPR G D+ + ++ ++Y+SC Sbjct: 366 AEDVIPAW-----YDRGIKADV-------LVVDPPRKGCDEKLLDTIKKMKPEKVVYVSC 413 Query: 324 NPDSLCRDLSILSTT--HTIERLALFDQFPYTRHMECGVLLVRK 365 NP +L RDL +L +T+E + D FP T H+E LLVRK Sbjct: 414 NPATLARDLKVLQEGGYYTVE-IQPVDMFPQTMHVEAVALLVRK 456 >gi|238758179|ref|ZP_04619358.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Yersinia aldovae ATCC 35236] gi|238703509|gb|EEP96047.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Yersinia aldovae ATCC 35236] Length = 425 Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 54/190 (28%), Positives = 86/190 (45%), Gaps = 27/190 (14%) Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 F Q N +N M +EW+ +L+L+CG GNF+L LAR V+ VE Sbjct: 251 FIQVNDVVNQQMVAQVIEWLEVEP---HERVLDLFCGMGNFTLPLARRARNVVGVEGVAA 307 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDP 299 V +YN N + NV N DI + F + +DP Sbjct: 308 LVANGQYNALTNGLANVSFFHE---------------NLESDISRQPWAAQGFDKVLLDP 352 Query: 300 PRSGLDDATVGMVQAYPH-ILYISCNPDSLCRDLSI-LSTTHTIERLALFDQFPYTRHME 357 R+G +V+ P ++Y+SCNP +L RD + L+ + + ++ + D FP+T H+E Sbjct: 353 ARAGAAGVMSHIVKLAPKRVVYVSCNPTTLARDSQVLLAAGYRLAQVRMLDMFPHTGHLE 412 Query: 358 CGVLLVRKPS 367 L +++P Sbjct: 413 SMALFMQEPG 422 >gi|300172822|ref|YP_003771987.1| RNA m5u methyltransferase family [Leuconostoc gasicomitatum LMG 18811] gi|299887200|emb|CBL91168.1| RNA m5u methyltransferase family [Leuconostoc gasicomitatum LMG 18811] Length = 464 Score = 76.3 bits (186), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 59/187 (31%), Positives = 89/187 (47%), Gaps = 21/187 (11%) Query: 185 NSFTQPNAGINVHMLEWVLAATK-GIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAK 241 NSF Q N + + LAA K G++ +++ Y G G +L +A ++ VE+ + Sbjct: 289 NSFYQVNPQTTATL--YTLAAEKAGLKKTDIVVDAYSGIGTITLSIADKVKKIYGVEVVE 346 Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301 +VE A N NH+ NV V + E Q ++ + + +FVDPPR Sbjct: 347 TAVEDAEKNAKNNHIENVSFVTADAPE--QMVKWAED----------GLKPNVVFVDPPR 394 Query: 302 SGLDDATVGMVQAY-PH-ILYISCNPDSLCRD-LSILSTTHTIE-RLALFDQFPYTRHME 357 GL + V A P +YISCNP +L RD + IL+ I+ + DQFP T H+E Sbjct: 395 KGLTAELIFAVSAMKPETFVYISCNPATLARDAVQILAEGFKIDGAVQPIDQFPQTTHVE 454 Query: 358 CGVLLVR 364 + R Sbjct: 455 SITVFKR 461 >gi|283768881|ref|ZP_06341792.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bulleidia extructa W1219] gi|283104667|gb|EFC06040.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bulleidia extructa W1219] Length = 386 Score = 76.3 bits (186), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 49/151 (32%), Positives = 79/151 (52%), Gaps = 21/151 (13%) Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278 G G SL+LARH V+ +E+ +V A N N + NV +F Q Sbjct: 239 GTGTISLLLARHVQSVIGIELNPQAVFDANENKKVNQIQNV--------QFLQG------ 284 Query: 279 FNRLKDIDIHSYRFKT--IFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSI 334 R++++ I YR + +F+DPPRSG+ + + P I+YISC+P++ RD+ I Sbjct: 285 --RVEEV-IPRYRIQADVLFLDPPRSGMGPCFMTYLDQLKIPKIVYISCDPNTQARDIQI 341 Query: 335 LSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 L + ++I D FP T+++E ++L RK Sbjct: 342 LKSHYSITVSQGVDMFPQTKNIENILVLERK 372 >gi|325684651|gb|EGD26806.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 451 Score = 76.3 bits (186), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 56/203 (27%), Positives = 92/203 (45%), Gaps = 20/203 (9%) Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFS 224 Y+D+++ L + SF Q N+ + + + + DL+ + Y G G Sbjct: 261 YIDDKIG----DLTFEISPQSFFQINSLQTPRLYKLAIDQAGLTKDDLIVDAYSGIGTIG 316 Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284 L A++ V VE+ K +V+ A+ N N ++N K ++E E Sbjct: 317 LSAAKYVKEVRGVEVVKAAVKDAKNNARLNQIHNAKYYAGKAEELMPKWAAE-------- 368 Query: 285 IDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCRDLSIL-STTHTI 341 + IFVDPPR GL + V+ P ++YISCNP +L RD+ +L +T Sbjct: 369 ----GLKTDVIFVDPPRKGLTKEFIDAAVKTGPKKVVYISCNPATLVRDMQLLMEAGYTT 424 Query: 342 ERLALFDQFPYTRHMECGVLLVR 364 + ++ D FP T H+E +L R Sbjct: 425 DLVSPVDMFPQTPHVESVTVLER 447 >gi|18977199|ref|NP_578556.1| putative RNA methyltransferase [Pyrococcus furiosus DSM 3638] gi|50401623|sp|Q8U2K7|Y827_PYRFU RecName: Full=Uncharacterized RNA methyltransferase PF0827 gi|18892856|gb|AAL80951.1| putative RNA methyltransferase [Pyrococcus furiosus DSM 3638] Length = 409 Score = 76.3 bits (186), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 60/177 (33%), Positives = 89/177 (50%), Gaps = 24/177 (13%) Query: 195 NVHMLEWVLAATKGI--QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIA 252 N + L +L A +G +L+LY G G FSL L + V+ VEI K +VE A+ + Sbjct: 253 NSYALPLLLKAVEGFLDGSKVLDLYSGIGTFSLYLTKKGFNVVGVEINKTAVEVAKLSAE 312 Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD-ATVGM 311 N +N EF +A R E E +I Y + +DPPR GL + A V Sbjct: 313 LNSLN---------VEF-KAKRAEEE-------NIEGY--DALILDPPRKGLGEFAGVVE 353 Query: 312 VQAYPHILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHMECGVLLVRKPS 367 + +++Y+SCNP D + LS ++ +E L D FP+T H+E V+ +RK S Sbjct: 354 KKGPENVVYVSCNPKRFILDFKNYLSRSYKVEDAILIDMFPHTPHVEA-VIKLRKYS 409 >gi|149374703|ref|ZP_01892477.1| RNA methyltransferase, TrmA family protein [Marinobacter algicola DG893] gi|149361406|gb|EDM49856.1| RNA methyltransferase, TrmA family protein [Marinobacter algicola DG893] Length = 429 Score = 76.3 bits (186), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 58/185 (31%), Positives = 86/185 (46%), Gaps = 23/185 (12%) Query: 187 FTQPNAGINVHML----EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 FTQ N IN +M+ EW L G + +L+L+CG GNF+L LAR +V+ VE Sbjct: 258 FTQVNVDINRNMVHRAVEW-LDIQPGER--VLDLFCGLGNFTLPLARRAGQVVGVEGDDA 314 Query: 243 SVEAARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301 V R N N ++NV +FT F++ I +DPPR Sbjct: 315 MVVRGRENAELNGLSNVAFHGADLHADFTAQPWAAEGFDK-------------ILIDPPR 361 Query: 302 SGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECG 359 SG + + I+Y+SCNP +L RD ++ + + R + D FP+T H+E Sbjct: 362 SGAQEVCEYLTAFGAKRIVYVSCNPATLARDAGVMVRNGYRLVRAGVMDMFPHTTHVESM 421 Query: 360 VLLVR 364 + R Sbjct: 422 AMFER 426 >gi|26988387|ref|NP_743812.1| 23S rRNA 5-methyluridine methyltransferase [Pseudomonas putida KT2440] gi|37088377|sp|Q88MB9|RUMA_PSEPK RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|24983141|gb|AAN67276.1|AE016354_3 RNA methyltransferase, TrmA family [Pseudomonas putida KT2440] Length = 452 Score = 76.3 bits (186), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 58/182 (31%), Positives = 85/182 (46%), Gaps = 17/182 (9%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 F Q NA +N M+E LA Q D +L+L+CG GNF+L LAR V+AVE + Sbjct: 281 GDFVQVNAQVNTAMIEQALAWLA-PQADERVLDLFCGLGNFALPLARQAREVVAVEGVQA 339 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302 V+ A NNV R + +Q L + F + +DPPR Sbjct: 340 MVD---RAAANARNNNVHNARFFQADLSQP---------LAGTGWAAEGFSAVLLDPPRD 387 Query: 303 GLDDATVGMVQAYP-HILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGV 360 G + G+ + ++Y+SCNP +L RD +L + ++R + D FP T H+E Sbjct: 388 GAFEVVQGIARLKARRLVYVSCNPATLARDAQVLVGQGYRLKRAGILDMFPQTAHVEAMA 447 Query: 361 LL 362 L Sbjct: 448 LF 449 >gi|311033023|ref|ZP_07711113.1| YefA [Bacillus sp. m3-13] Length = 455 Score = 76.3 bits (186), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 49/157 (31%), Positives = 78/157 (49%), Gaps = 17/157 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G SL LA+ +V VEI ++E A+ N N + N + ++ Sbjct: 312 VIDAYCGIGTISLFLAQKAKKVFGVEIVPEAIEDAKRNAELNEITNAEFAVGEAEVVIPK 371 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYP-HILYISCNPDSLCR 330 +E D+ + VDPPR G D++ + + + P ++Y+SCNP +L R Sbjct: 372 WYKE---GNTADV---------LVVDPPRKGCDESLLKTILEMKPKKVVYVSCNPATLAR 419 Query: 331 DLSILSTT--HTIERLALFDQFPYTRHMECGVLLVRK 365 DL +L T+E + D FP+T H+EC LV K Sbjct: 420 DLRVLEDGGYKTVE-VQPVDMFPHTVHVECVSHLVLK 455 >gi|240146223|ref|ZP_04744824.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Roseburia intestinalis L1-82] gi|257201634|gb|EEU99918.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Roseburia intestinalis L1-82] Length = 561 Score = 76.3 bits (186), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 48/155 (30%), Positives = 77/155 (49%), Gaps = 18/155 (11%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + +LY G G + +L+ +V+ VEI + +V AAR N A N + N + + Sbjct: 328 VFDLYSGTGTIAQILSPVAKKVIGVEIVEEAVVAARENAALNGLTNCEFIAG-------- 379 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330 + LK ID + I +DPPR G+ + + Y P ++YISC P SL R Sbjct: 380 -------DVLKVIDKIEEKPDYIVLDPPRDGIHPKALEKIIRYNVPQMVYISCKPTSLAR 432 Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364 DL +L + ++++ D FP T ++E VLL + Sbjct: 433 DLEVLQARGYKVKKVQCVDMFPSTGNVETVVLLSK 467 >gi|167750197|ref|ZP_02422324.1| hypothetical protein EUBSIR_01171 [Eubacterium siraeum DSM 15702] gi|167656759|gb|EDS00889.1| hypothetical protein EUBSIR_01171 [Eubacterium siraeum DSM 15702] Length = 493 Score = 76.3 bits (186), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 46/160 (28%), Positives = 75/160 (46%), Gaps = 16/160 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +L+LYCG G L +AR +++ VEI ++E A+ N AN + N + + + E + Sbjct: 305 VLDLYCGAGTIGLSMARTAKKIIGVEIVPEAIENAKQNALANGITNCEFICADAAEAARI 364 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330 + + R I VDPPR G + A+ P I+ +SCN + R Sbjct: 365 LHS------------RNLRPDVIMVDPPRKGCGRDACEQIAAFSAPRIVMVSCNAATAAR 412 Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLV-RKPSG 368 D + + ++ ++ D F T H+E VLL +KP G Sbjct: 413 DCACFAELGYSTDKCVAVDMFSGTNHVETVVLLSHKKPDG 452 >gi|89075082|ref|ZP_01161523.1| 23S rRNA (uracil-5-)-methyltransferase [Photobacterium sp. SKA34] gi|89049169|gb|EAR54734.1| 23S rRNA (uracil-5-)-methyltransferase [Photobacterium sp. SKA34] Length = 440 Score = 76.3 bits (186), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 59/181 (32%), Positives = 86/181 (47%), Gaps = 15/181 (8%) Query: 187 FTQPNAGINVHMLEWVLAATK-GIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 F Q N +NV M+E + Q +L+L+CG GNFSL LAR V+ VE V Sbjct: 271 FIQVNRDVNVKMVEQAINWLDIQPQDRVLDLFCGLGNFSLPLARRAKAVVGVEGVDEMVA 330 Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD 305 A N AAN + N + + E + +E +F I +DP R+G Sbjct: 331 RATTNAAANGLGNATFYQANLDEDATKLVWAQE------------QFDKILLDPARAGAA 378 Query: 306 DATVGMVQAYP-HILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVLLV 363 +V P ++Y+SCNP +L RD +L + + RL + D FP+T H+E L V Sbjct: 379 GVMQHIVNLAPSKVVYVSCNPATLARDSQMLLQQGYKLARLGMMDMFPHTGHLESMALFV 438 Query: 364 R 364 + Sbjct: 439 K 439 >gi|303235612|ref|ZP_07322219.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella disiens FB035-09AN] gi|302484059|gb|EFL47047.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella disiens FB035-09AN] Length = 474 Score = 76.3 bits (186), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 54/189 (28%), Positives = 88/189 (46%), Gaps = 16/189 (8%) Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL--ELYCGNGNFSLVLARHFDRVL 235 L ++ SF Q N H+ V A G+ G L +LY G G + +A+ +V+ Sbjct: 295 LKFKVGPKSFYQTNTDQAYHLYS-VARAFAGLTGKELVYDLYTGTGTIANFVAKQAKQVV 353 Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295 +E ++E A+ N N + N K+ D R I Sbjct: 354 GIEYVPEAIEDAKINSEINEIGNTLFYAGDMKDILT-----------DDFVKQHGRPDVI 402 Query: 296 FVDPPRSGLDDATVGMV-QAYPH-ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYT 353 DPPR+G+ + + ++ +A+P I+Y+SCNP + RDL++LS + + + D FP+T Sbjct: 403 ITDPPRAGMHNDVIDVILKAHPKRIVYVSCNPATQARDLALLSPDYRVVAVQPVDMFPHT 462 Query: 354 RHMECGVLL 362 H+E VLL Sbjct: 463 PHVENVVLL 471 >gi|300361143|ref|ZP_07057320.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus gasseri JV-V03] gi|300353762|gb|EFJ69633.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus gasseri JV-V03] Length = 448 Score = 76.3 bits (186), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 48/156 (30%), Positives = 73/156 (46%), Gaps = 15/156 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ Y G G L +A+H V +E+ KP+V+ A N N + N + V ++E Sbjct: 305 VIDAYSGIGTIGLSVAKHVKAVRGMEVIKPAVDDANANAKLNGIMNAEYVVGKAEEVMPR 364 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCR 330 +E + IFVDPPR GL V V+ P I+YISCNP ++ R Sbjct: 365 WAKE------------GLKTDVIFVDPPRKGLTPEFVDAAVETDPKKIVYISCNPATMVR 412 Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRK 365 DL + + + D FP T H+E +L +K Sbjct: 413 DLQLFREQGYDFNEIDPVDMFPQTPHVEAVTVLEKK 448 >gi|167748614|ref|ZP_02420741.1| hypothetical protein ANACAC_03387 [Anaerostipes caccae DSM 14662] gi|167651928|gb|EDR96057.1| hypothetical protein ANACAC_03387 [Anaerostipes caccae DSM 14662] Length = 543 Score = 76.3 bits (186), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 75/161 (46%), Gaps = 18/161 (11%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + +LY G G + +LA +V+ VEI +VEAAR N N ++N EF Sbjct: 311 IFDLYSGTGTIAQMLAPVAKKVVGVEIVGEAVEAARENAGLNGLDNC--------EFIAG 362 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330 + LK ID + I +DPPR G+ + + + ++YISC P SL R Sbjct: 363 -------DVLKVIDELEDKPDFIVLDPPRDGIHPKAIQKIIDFGVEKMVYISCKPTSLAR 415 Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRKPSGWH 370 DL I + +ER D FP T H+E LL + S H Sbjct: 416 DLEIFREAGYEVERGGCVDMFPSTVHVEVVCLLSKLKSDKH 456 >gi|227114811|ref|ZP_03828467.1| 23S rRNA 5-methyluridine methyltransferase [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 449 Score = 76.3 bits (186), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 58/199 (29%), Positives = 91/199 (45%), Gaps = 19/199 (9%) Query: 173 VAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNFSLVLARHF 231 VAG TL + F Q N +N M+ L Q +L+L+CG GNF+L LA+ Sbjct: 262 VAGLTLAFS--PRDFIQVNDAVNQQMVAQALTWLDVQPQDRILDLFCGMGNFTLPLAQRA 319 Query: 232 DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNRLKDIDIHSY 290 V+ VE VE R N N ++NV + + TQ + F++ Sbjct: 320 ASVVGVEGVTALVEKGRENAQRNGLSNVTFFHQNLEDDVTQQPWAAQGFDK--------- 370 Query: 291 RFKTIFVDPPRSGLDDATVGMVQAYPH-ILYISCNPDSLCRDLSI-LSTTHTIERLALFD 348 I +DP R+G + + P ++Y+SCN +L RD + L+ + + +A+ D Sbjct: 371 ----ILLDPARAGAAGVMEQITRLAPKRVVYVSCNATTLARDSKVLLAAGYRLANVAMLD 426 Query: 349 QFPYTRHMECGVLLVRKPS 367 FP+T H+E L + S Sbjct: 427 MFPHTGHLESMALFLHDTS 445 >gi|313889955|ref|ZP_07823593.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pseudoporcinus SPIN 20026] gi|313121671|gb|EFR44772.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pseudoporcinus SPIN 20026] Length = 451 Score = 76.3 bits (186), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 83/386 (21%), Positives = 156/386 (40%), Gaps = 54/386 (13%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIF-------RSEPIHYRMRAEFHIWHDGDDLYHIM 62 Y +QL K D +RQ + FQ + F EP YR + +F G ++ + Sbjct: 90 YPKQLDFKDDLIRQSLKKFQPQGFENFPIKHTIGMVEPWRYRAKLQFQTRSFGGKVHAGL 149 Query: 63 FDQQTKERMRIDYFM----PGSLLINALM---------------IEMMATIRLEPLLRAK 103 F + + + I+ + +IN ++ I + T+ + + Sbjct: 150 FAEGSHHLISIENCLVQDSTTQTIINGIVSLLEGHKIPIYNERRIAGLRTVMIRKGQSSG 209 Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLD-DAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162 Q+ ++TS+ + + L+ + + + + A+ + + Y +T+I Sbjct: 210 QVQVIFVTSK-ELHLAPLVKELVTNFEEIKTVAVNYNRSKTSSLY-------GEQTEIIW 261 Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNG 221 +D +DE + L R +F Q N + V+ A + + D +++ YCG G Sbjct: 262 GKDTIDEDVLDYSFALSPR----AFYQLNPQQTETLYSEVVKALEVSEEDQIIDAYCGVG 317 Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281 A+H + ++I ++ A+ N A N +++ +E Sbjct: 318 TIGFAFAKHVKGIRGMDIIPEAIADAKKNAKAMGFTNTYYETGKAEDLIPKWYQE----- 372 Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTTH 339 YR I VDPPR+GLD+ + + + ++Y+SCN +L RDL L+ + Sbjct: 373 -------GYRADAIIVDPPRTGLDEKLLETIIKFQPAKMVYVSCNTSTLARDLVTLAKVY 425 Query: 340 TIERLALFDQFPYTRHMECGVLLVRK 365 IE + D FP+T E V L +K Sbjct: 426 QIEYIQSVDMFPHTARTEAVVKLRKK 451 >gi|255730431|ref|XP_002550140.1| endo-exonuclease NUCR [Candida tropicalis MYA-3404] gi|240132097|gb|EER31655.1| endo-exonuclease NUCR [Candida tropicalis MYA-3404] Length = 577 Score = 76.3 bits (186), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 48/161 (29%), Positives = 81/161 (50%), Gaps = 21/161 (13%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L++ YCG+G FS+ + +V+ VEI+ S++ A+ N N+++N K + ++E Sbjct: 429 LVDAYCGSGLFSITCSSKVSKVIGVEISAESIKFAKINAIKNNISNAKFIVGKAEEI--- 485 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330 ID + + ++ +DPPR G DD + + Y I+YISCN S R Sbjct: 486 ---------FASIDTPNDQ-TSVILDPPRKGCDDVFLNQLSDYNPAKIVYISCNVHSQAR 535 Query: 331 DLS-ILSTT-----HTIERLALFDQFPYTRHMECGVLLVRK 365 D+ ++ T + +E + FD FP T H+E +L K Sbjct: 536 DIEWFINNTGNGHKYQVESIKGFDFFPQTHHVESVAVLTLK 576 >gi|2196421|dbj|BAA20428.1| unnamed protein product [Synechocystis sp. PCC 6803] Length = 463 Score = 76.3 bits (186), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 60/214 (28%), Positives = 96/214 (44%), Gaps = 30/214 (14%) Query: 163 DRDYVDERLTVAGRTLIYRQIE--------NSFTQPNAGINVHMLEWVLAATKGIQGD-- 212 +R + DE + +AGR + + N+F Q N+G +L L +QG Sbjct: 261 NRIFGDETVVIAGRGICREKFADLSFSLGANTFFQVNSGA-AELLLTRLQQALNLQGAEL 319 Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L++ Y G G F+L LAR + +A+E+ + SV + N N + NV + + + Sbjct: 320 LVDAYAGVGTFTLPLARQVRQAIAIEVNQDSVHQGQRNAEINQIANVDFLAGTVETVLPT 379 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCR 330 + + + D+ + +DPPR G + + Q I YISC P +L R Sbjct: 380 L------SEIPDV---------LLLDPPRKGCAPEVLREIIRQRPEKIAYISCQPPTLAR 424 Query: 331 DLSILSTT--HTIERLALFDQFPYTRHMECGVLL 362 DL L + I + D FP T H+EC V+L Sbjct: 425 DLKFLCAEGFYGITWVQGCDFFPQTAHVECAVIL 458 >gi|288800143|ref|ZP_06405602.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella sp. oral taxon 299 str. F0039] gi|288333391|gb|EFC71870.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella sp. oral taxon 299 str. F0039] Length = 473 Score = 76.3 bits (186), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 59/203 (29%), Positives = 97/203 (47%), Gaps = 24/203 (11%) Query: 175 GRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGDLL--ELYCGNGNFS 224 G IY +E+ SF Q N H+ + V G+ G+ L +LY G G + Sbjct: 282 GNNYIYELMEDLKFKVGPKSFYQTNTEQAYHLYD-VTRKFAGLTGNELVYDLYTGTGTIA 340 Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284 +A +V+ +E +++ A+ N N++NN K+ +EF Sbjct: 341 NFVAPKAKKVIGIEYVPEAIKDAKVNSQINNINNTLFYAGDMKDIL-----SQEF----- 390 Query: 285 IDIHSYRFKTIFVDPPRSGL-DDATVGMVQAYPH-ILYISCNPDSLCRDLSILSTTHTIE 342 I+ H R + I DPPR+G+ D ++ A P+ I+Y+SCNP + RDL+ + + + Sbjct: 391 IEEHG-RPEVIITDPPRAGMHPDVIQTILSAAPNRIVYVSCNPATQARDLADFNKDYKVT 449 Query: 343 RLALFDQFPYTRHMECGVLLVRK 365 + D FP+T H+E VLL R+ Sbjct: 450 AVQPVDMFPHTPHVENVVLLERR 472 >gi|91792550|ref|YP_562201.1| 23S rRNA 5-methyluridine methyltransferase [Shewanella denitrificans OS217] gi|123166314|sp|Q12PZ8|RUMA_SHEDO RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|91714552|gb|ABE54478.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Shewanella denitrificans OS217] Length = 468 Score = 76.3 bits (186), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 55/186 (29%), Positives = 94/186 (50%), Gaps = 21/186 (11%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLA---RHFD--RVLAVE 238 +F Q NA +N M+E + G+ +L+L+CG GNFSL LA ++ D V+ VE Sbjct: 292 GNFVQVNAEVNQRMVEQAVNWLDLQVGERVLDLFCGVGNFSLALANRGQNLDGLEVIGVE 351 Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298 V+ AR N N++ N+ + + + E+ ++ + +D Sbjct: 352 GVPEMVQQARENAKRNNLANLSFYHA---DLSADLSNEKWLGKID----------KLLLD 398 Query: 299 PPRSGLDDATVGMVQAYPH-ILYISCNPDSLCRDLSI-LSTTHTIERLALFDQFPYTRHM 356 P R+G ++ + + P ++Y+SCNP SL RD S+ LS + +++L++ D FP T H+ Sbjct: 399 PARAGAFESLQWLQKMKPKKVVYVSCNPASLARDSSVLLSQGYQLKQLSMIDMFPQTHHI 458 Query: 357 ECGVLL 362 E L Sbjct: 459 EAMALF 464 >gi|307701067|ref|ZP_07638092.1| TRAM domain protein [Mobiluncus mulieris FB024-16] gi|307614062|gb|EFN93306.1| TRAM domain protein [Mobiluncus mulieris FB024-16] Length = 416 Score = 76.3 bits (186), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 65/205 (31%), Positives = 94/205 (45%), Gaps = 14/205 (6%) Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSL 225 V E + V R YR +SF Q + ++E +LA I G ++LELY G+G FS+ Sbjct: 219 VREVVRVGAREHTYRIFASSFWQTDYRAPAVLVEALLAGVGDISGFEVLELYAGSGLFSV 278 Query: 226 VLARHFD---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282 LA R+ VE + +V++A YN+ + + S E R F R Sbjct: 279 FLAEAIGDSGRLTTVEGDRVAVKSAGYNLQHAGFEDTR----SRVERAAVSAR---FLRG 331 Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLSILS-TTH 339 D R + DPPRSGL G + + ISC+P S RDL L + Sbjct: 332 LDFGQRFMRGTLVVADPPRSGLGRDVAGAICGLEPDLVALISCDPVSCARDLEALRRGGY 391 Query: 340 TIERLALFDQFPYTRHMECGVLLVR 364 ++ +FD FPYT+H+E +L R Sbjct: 392 RLQSFRVFDLFPYTQHVEVLSVLGR 416 >gi|253583643|ref|ZP_04860841.1| tRNA (Uracil-5-)-methyltransferase [Fusobacterium varium ATCC 27725] gi|251834215|gb|EES62778.1| tRNA (Uracil-5-)-methyltransferase [Fusobacterium varium ATCC 27725] Length = 451 Score = 76.3 bits (186), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 72/370 (19%), Positives = 165/370 (44%), Gaps = 38/370 (10%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTK 68 +Y++ + E V + M V ++ I +P HYR + ++ F +++ Sbjct: 94 KYKKLMVEDVLKKIGKMDNISVADV-IGSEDPYHYRNKIIEPFRKSKGEIISGFFKRKSH 152 Query: 69 ERMRIDYFMPGSLLINALMIEMMATIRLEPLL-------RAKLFQIDYLTSQSDQAIVTL 121 + ++ + S L N ++ E+ + + E + + L + T+ ++A++ L Sbjct: 153 DVFEVEESILNSRLGNKIIKELKSILNREKVSVYDENEHKGILRNVMVRTNSKNEAMLVL 212 Query: 122 IYHRL-LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIY 180 I + + ++ +++ + L++ ++ K I + +T + L ++ + + G I Sbjct: 213 IINAVKVEKRYKDILMELKNKINEIK-SIYISLNPKRTNVALG----EKNVFIWGEKTIT 267 Query: 181 RQIEN--------SFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHF 231 +I+ SF Q N + + K I+ ++++ Y G G +++L++ Sbjct: 268 EEIDGISFNISPLSFFQINLPQTKKLYNTAVNYFKDIENKNVVDAYSGTGTLAMILSKKA 327 Query: 232 DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291 +V A+E+ + + N ++N++ + + ++ +L ++ + Sbjct: 328 KKVFAIELVQSATNDGIKTAKENGISNIEFINGAVED------------KLPELIKKGEK 375 Query: 292 FKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILS-TTHTIERLALFD 348 I DPPR G++++++ V I+YISCNP + RD ILS +T+E++ D Sbjct: 376 VDAIIFDPPRKGIEESSLLKVAESNIKEIVYISCNPSTFARDAEILSREGYTLEKVQPVD 435 Query: 349 QFPYTRHMEC 358 FP T H E Sbjct: 436 MFPGTAHTEV 445 >gi|225027843|ref|ZP_03717035.1| hypothetical protein EUBHAL_02103 [Eubacterium hallii DSM 3353] gi|224954790|gb|EEG35999.1| hypothetical protein EUBHAL_02103 [Eubacterium hallii DSM 3353] Length = 560 Score = 76.3 bits (186), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 64/213 (30%), Positives = 99/213 (46%), Gaps = 30/213 (14%) Query: 168 DERLTVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGDLL--ELY 217 DE T+ G+ Y + N SF Q N + +L + G D L +LY Sbjct: 274 DETKTLYGQDYFYEYLYNMRFKISPFSFFQTNT-LGAEVLYDKVREYVGETKDKLIYDLY 332 Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277 G G + +LA +V+ VEI + +VEAA+ N NH++N EF Sbjct: 333 TGTGTIAQMLASVASKVVGVEIVEEAVEAAKKNAVDNHLDNC--------EFIAG----- 379 Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSIL 335 + LK +D + + + +DPPR G+ + + + ++Y+SC P SL RDL + Sbjct: 380 --DVLKVVDNLTKKPDILVLDPPRDGIHPKALTKIINFNVDEMVYVSCKPTSLMRDLLVF 437 Query: 336 -STTHTIERLALFDQFPYTRHMECGVLLV-RKP 366 + ++R L D FP T H+E VLL +KP Sbjct: 438 REAGYEVKRACLVDMFPGTVHVETVVLLSQQKP 470 >gi|16329997|ref|NP_440725.1| hypothetical protein sll1967 [Synechocystis sp. PCC 6803] gi|50401741|sp|P73374|Y1967_SYNY3 RecName: Full=Uncharacterized RNA methyltransferase sll1967 gi|1652483|dbj|BAA17405.1| sll1967 [Synechocystis sp. PCC 6803] Length = 463 Score = 76.3 bits (186), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 60/214 (28%), Positives = 96/214 (44%), Gaps = 30/214 (14%) Query: 163 DRDYVDERLTVAGRTLIYRQIE--------NSFTQPNAGINVHMLEWVLAATKGIQGD-- 212 +R + DE + +AGR + + N+F Q N+G +L L +QG Sbjct: 261 NRIFGDETVVIAGRGICREKFADLSFSLGANTFFQVNSGA-AELLLTRLQQALNLQGAEL 319 Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L++ Y G G F+L LAR + +A+E+ + SV + N N + NV + + + Sbjct: 320 LVDAYAGVGTFTLPLARQVRQAIAIEVNQDSVHQGQRNAEINQIANVDFLAGTVETVLPT 379 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCR 330 + + + D+ + +DPPR G + + Q I YISC P +L R Sbjct: 380 L------SEIPDV---------LLLDPPRKGCAPEVLREIIRQRPEKIAYISCQPPTLAR 424 Query: 331 DLSILSTT--HTIERLALFDQFPYTRHMECGVLL 362 DL L + I + D FP T H+EC V+L Sbjct: 425 DLKFLCAEGFYGITWVQGCDFFPQTAHVECAVIL 458 >gi|293375600|ref|ZP_06621874.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Turicibacter sanguinis PC909] gi|292645817|gb|EFF63853.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Turicibacter sanguinis PC909] Length = 459 Score = 76.3 bits (186), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 54/163 (33%), Positives = 78/163 (47%), Gaps = 17/163 (10%) Query: 208 GIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265 G+ G+ + + YCG G +L LA+H +V VEI ++ A N N N + Sbjct: 307 GLTGEEIVFDAYCGIGTITLFLAQHAKKVYGVEIIPEAIADANMNAKLNGFENTEFAVGK 366 Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISC 323 S+E A E + D+ I VDPPR G D + M++A P I+Y+SC Sbjct: 367 SEEVIPAW---IEQGIVPDV---------IVVDPPRKGCDKTLLDTMLEAAPKRIVYVSC 414 Query: 324 NPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRK 365 + +L RD+ IL + +E D FP T H+E LL RK Sbjct: 415 DSSTLARDVKILVDGGYQLEVAQPVDMFPQTSHVEVVALLTRK 457 >gi|282880269|ref|ZP_06288985.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella timonensis CRIS 5C-B1] gi|281305864|gb|EFA97908.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella timonensis CRIS 5C-B1] Length = 472 Score = 76.3 bits (186), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 53/189 (28%), Positives = 89/189 (47%), Gaps = 16/189 (8%) Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFSLVLARHFDRVLA 236 L ++ SF Q N H+ E + +L+ +LY G G + +ARH +V+ Sbjct: 293 LQFKVAAKSFYQTNTQQAFHLYEVARQLAQLTGKELVYDLYTGTGTIANFVARHAQQVIG 352 Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY-RFKTI 295 +E + ++ A+ N N + N K+ L D + + + I Sbjct: 353 IEYVEDAIADAKANSKCNGIENTLFYAGDMKDI------------LTDEFVKQHGKPDVI 400 Query: 296 FVDPPRSGL-DDATVGMVQAYPH-ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYT 353 DPPR+G+ D +++A P I+Y+SCNP + RDL +L+ + +E + D FP+T Sbjct: 401 ITDPPRAGMHPDVIQTILRAAPKRIVYVSCNPATQARDLEVLNEQYRVEEVQPVDMFPHT 460 Query: 354 RHMECGVLL 362 H+E VLL Sbjct: 461 PHVENVVLL 469 >gi|258510692|ref|YP_003184126.1| RNA methyltransferase, TrmA family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257477418|gb|ACV57737.1| RNA methyltransferase, TrmA family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 449 Score = 76.3 bits (186), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 60/191 (31%), Positives = 88/191 (46%), Gaps = 16/191 (8%) Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLARHFDRVLA 236 L R SF Q A + M V+ A + + D+ ++ YCG G +L+LA H R + Sbjct: 270 LRVRWSPRSFLQVQADMAERMYHHVVRAVEVRETDVVIDAYCGIGAMTLLLASHAARAVG 329 Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296 VE + ++ AR N N V N + V R ER R + R + Sbjct: 330 VEEVEDAIADARANAKLNRVRNAEFV---------VDRVERWLPRFVEA---GNRADVLV 377 Query: 297 VDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYT 353 DPPR G+D A + ++Y+SCNP +L RDL +L+ + + FD FP T Sbjct: 378 FDPPRKGVDRAAIEAAAEANVERLVYVSCNPATLERDLRLLAARGFYVTDIQPFDMFPQT 437 Query: 354 RHMECGVLLVR 364 H+EC V + R Sbjct: 438 SHVECVVTMRR 448 >gi|308798929|ref|XP_003074244.1| RNA methyltransferase family protein (ISS) [Ostreococcus tauri] gi|116000416|emb|CAL50096.1| RNA methyltransferase family protein (ISS) [Ostreococcus tauri] Length = 1009 Score = 76.3 bits (186), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 72/300 (24%), Positives = 135/300 (45%), Gaps = 36/300 (12%) Query: 85 ALMIEMMATIRLEPLLRAKLFQ-IDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALH 143 +LM+++ T + L L + I +T +A+ ++++ + +A LR A Sbjct: 723 SLMVDLATTASEKELTSGALAELIADITKH--EAVTSVVHTTVPAEA------ELRRAGV 774 Query: 144 ARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL 203 R + G+ +K + Y + ++ + + SF Q N ++ V+ Sbjct: 775 GRSAKFVKGGKKPISKRKVVTLYGENKIVETLHGVKFELSSASFFQTNTEQAARLVREVV 834 Query: 204 AATKGIQGD----LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN- 258 A G GD +L+L+CG G L +A + RV+ E+ +VE AR N N + N Sbjct: 835 AGC-GFAGDRSETVLDLFCGVGTMGLSVASNAKRVIGWEVVPEAVEDARRNAEINGITNA 893 Query: 259 ----VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA 314 V + R++ + T+A+ + + L DI + DP R G+D + + +++ Sbjct: 894 DFYRVDLSRLNPSKGTKALLTTPQGDVLPMPDI-------VITDPARPGMDASLIAILRT 946 Query: 315 YP--HILYISCNPDSLCRDLSILSTTHTIERLALF--------DQFPYTRHMECGVLLVR 364 I+Y+SCNP + RDL++++ + A + D FP+T H+E +L R Sbjct: 947 IGARRIVYVSCNPATQARDLALITAPSQGSQDAAYVLKLCTPVDMFPHTAHVESVAVLDR 1006 >gi|302334849|ref|YP_003800056.1| 23S rRNA m(5)U-1939 methyltransferase [Olsenella uli DSM 7084] gi|301318689|gb|ADK67176.1| 23S rRNA m(5)U-1939 methyltransferase [Olsenella uli DSM 7084] Length = 416 Score = 76.3 bits (186), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 60/200 (30%), Positives = 87/200 (43%), Gaps = 27/200 (13%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFD---------R 233 SF Q N +L + G++G +L+ YCG G + A R Sbjct: 216 TSFYQTNP-RQTEVLYALAVEAAGLRGGERVLDAYCGTGTIGICAAAATRRRGAEVQDVR 274 Query: 234 VLAVEIAKPSVEAARYNIAANHVN-NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292 V+ VE +V AR N AN + + VR + F MR K RF Sbjct: 275 VIGVEQVGDAVACARRNATANGLGGSCSFVREDATAF---MR--------KAAGCGEGRF 323 Query: 293 KTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCRDLSILST-THTIERLALFDQ 349 +F+DPPR+G A + G+ PH ++YISCNP + RDL + + + L D Sbjct: 324 DVVFMDPPRAGSTPAFIHGVAGLAPHRVVYISCNPTTQARDLKEFQQLGYAVSTVELVDM 383 Query: 350 FPYTRHMECGVLLVRKPSGW 369 FP+T+H+E L+ R W Sbjct: 384 FPHTKHVETIALMTRNGGEW 403 >gi|254556113|ref|YP_003062530.1| RNA methyltransferase [Lactobacillus plantarum JDM1] gi|254045040|gb|ACT61833.1| RNA methyltransferase [Lactobacillus plantarum JDM1] Length = 457 Score = 76.3 bits (186), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 53/164 (32%), Positives = 80/164 (48%), Gaps = 18/164 (10%) Query: 208 GIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265 G+ G+ +++ Y G G SL +A+H +V VEI +++ AR N N + N V S Sbjct: 305 GLTGNETVIDAYSGIGTISLTMAQHAKQVYGVEIVPAAIDNARQNADKNGITNATFVLDS 364 Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD-DATVGMVQAYPH-ILYISC 323 ++ +AM + + D+ I VDPPR GLD D + P ++YISC Sbjct: 365 AE---KAMAKWQSDGVKPDV---------IVVDPPRKGLDADFIKSAGEMAPKRVVYISC 412 Query: 324 NPDSLCRDLSILS--TTHTIERLALFDQFPYTRHMECGVLLVRK 365 NP +L RD + H + DQFP T H+E +L R+ Sbjct: 413 NPSTLVRDAQRFAEYGYHISAPVQPVDQFPQTPHIESVTVLERE 456 >gi|299820563|ref|ZP_07052453.1| 23S rRNA (uracil-5-)-methyltransferase [Listeria grayi DSM 20601] gi|299818058|gb|EFI85292.1| 23S rRNA (uracil-5-)-methyltransferase [Listeria grayi DSM 20601] Length = 457 Score = 76.3 bits (186), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 41/155 (26%), Positives = 75/155 (48%), Gaps = 14/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G L LA V +++ ++E A++N A N V N + + Sbjct: 315 IIDAYCGAGTIGLSLAGQVREVRGMDVIPEAIEDAKHNAALNQVTN---------SYYEV 365 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCR 330 + E + + ++ + +DPPR G D + + + Y I+Y+SCNP +L R Sbjct: 366 GKAETILPKWLE---EGFQADAVILDPPRVGCDQSLIRALLDYAPKQIVYVSCNPSTLAR 422 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 DL++ S + I + D FP T H+E ++ ++ Sbjct: 423 DLALFSKEYQINSIQPVDMFPQTAHVETVTVMQKR 457 >gi|160942249|ref|ZP_02089558.1| hypothetical protein CLOBOL_07135 [Clostridium bolteae ATCC BAA-613] gi|158434806|gb|EDP12573.1| hypothetical protein CLOBOL_07135 [Clostridium bolteae ATCC BAA-613] Length = 477 Score = 75.9 bits (185), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 71/265 (26%), Positives = 118/265 (44%), Gaps = 34/265 (12%) Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD 165 Q DYL ++++ ++ +L+ +L LH + + +++ T I +D Sbjct: 231 QRDYLGERTEEEVLAEWTKKLVGLPLDG---KLAGILHTENDSLADVVQSDATHILYGQD 287 Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-----LLELYCGN 220 Y E L L +R SF Q N+ E + +G GD + +LY G Sbjct: 288 YFYEELL----GLRFRISPFSFFQTNS----LGAEVLYDTARGFVGDTKDRVVFDLYSGT 339 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G + +LA +V+ VEI + +V +A+ N N + N EF + Sbjct: 340 GTIAQILAPVAKKVVGVEIVEEAVRSAQVNARLNGLENC--------EFLAG-------D 384 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILST- 337 LK ID + I VDPPR G+ +G + + I+YISC P SL RDL +L Sbjct: 385 VLKVIDELQDKPDLIVVDPPRDGIHPKALGKIIDFGVDRIVYISCKPTSLVRDLVVLQDR 444 Query: 338 THTIERLALFDQFPYTRHMECGVLL 362 + +E++ D FP T ++E +++ Sbjct: 445 GYRVEKVCGVDMFPGTGNVEVVIMM 469 >gi|116513601|ref|YP_812507.1| tRNA (uracil-5-)-methyltransferase related enzyme [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|116092916|gb|ABJ58069.1| tRNA (uracil-5-)-methyltransferase related enzyme [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|325125246|gb|ADY84576.1| RNA methyltransferase [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 451 Score = 75.9 bits (185), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 56/203 (27%), Positives = 92/203 (45%), Gaps = 20/203 (9%) Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFS 224 Y+D+++ L + SF Q N+ + + + + DL+ + Y G G Sbjct: 261 YIDDKIG----DLTFEISPQSFFQINSLQTPRLYKLAIDQAGLTKDDLIVDAYSGIGTIG 316 Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284 L A++ V VE+ K +V+ A+ N N ++N K ++E E Sbjct: 317 LSAAKYVKEVRGVEVVKAAVKDAKNNARLNQIHNAKYYVGKAEELMPKWAAE-------- 368 Query: 285 IDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCRDLSIL-STTHTI 341 + IFVDPPR GL + V+ P ++YISCNP +L RD+ +L +T Sbjct: 369 ----GLKTDVIFVDPPRKGLTKEFIDAAVKTGPKKVVYISCNPATLVRDMQLLMEAGYTT 424 Query: 342 ERLALFDQFPYTRHMECGVLLVR 364 + ++ D FP T H+E +L R Sbjct: 425 DLVSPVDMFPQTPHVESVTVLER 447 >gi|294056010|ref|YP_003549668.1| RNA methyltransferase, TrmA family [Coraliomargarita akajimensis DSM 45221] gi|293615343|gb|ADE55498.1| RNA methyltransferase, TrmA family [Coraliomargarita akajimensis DSM 45221] Length = 409 Score = 75.9 bits (185), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 56/195 (28%), Positives = 101/195 (51%), Gaps = 21/195 (10%) Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNFSL 225 V ER+ R + ++ F Q N I M+++V A A+ L++ YCG+G F+L Sbjct: 224 VSERV----RDVTFQFKAGEFFQNNPFILPKMVDYVEAEASADGARYLVDAYCGSGLFAL 279 Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285 A+ F++V VE++ +V A+ N + ++N + + + E FN LK Sbjct: 280 STAKSFEQVAGVEVSDQAVLWAQANCRISGISNARFL---------IGKAEAIFNGLK-- 328 Query: 286 DIHSYRFKTIFVDPPRSGLDDA-TVGMVQAYPH-ILYISCNPDSLCRDL-SILSTTHTIE 342 + +DPPR G D++ + ++Q P ++Y+SC+P + RD+ + + + + Sbjct: 329 --FPADETALIIDPPRKGCDESFRLQLLQFRPQRLVYVSCDPATQARDVKAFVDGGYRVT 386 Query: 343 RLALFDQFPYTRHME 357 R+ FD FP+TRH+E Sbjct: 387 RIQPFDLFPHTRHIE 401 >gi|307566456|ref|ZP_07628890.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella amnii CRIS 21A-A] gi|307344844|gb|EFN90247.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella amnii CRIS 21A-A] Length = 476 Score = 75.9 bits (185), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 48/153 (31%), Positives = 78/153 (50%), Gaps = 15/153 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + +LY G G + +A+ +V+ +E ++E A+ N N++ N K Sbjct: 331 VYDLYTGTGTIANFIAKKAKKVIGIEYVPEAIEDAKVNSKINNIENTLFYAGDMK----- 385 Query: 273 MRREREFNRLKDIDIHSY-RFKTIFVDPPRSGLDDATVGMV-QAYPH-ILYISCNPDSLC 329 N L D + + R I DPPR+G+ + ++ QA P I+Y+SCNP + Sbjct: 386 -------NILTDRFVKEHGRPDVIITDPPRAGMHPDVINVILQARPKRIVYVSCNPATQA 438 Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362 RDLS+L+T++ I + D FP+T H+E VLL Sbjct: 439 RDLSLLNTSYKIIAVQPVDMFPHTPHVENVVLL 471 >gi|170016721|ref|YP_001727640.1| 23S rRNA (uracil-5-)-methyltransferase [Leuconostoc citreum KM20] gi|169803578|gb|ACA82196.1| 23S rRNA (uracil-5-)-methyltransferase [Leuconostoc citreum KM20] Length = 462 Score = 75.9 bits (185), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 48/150 (32%), Positives = 74/150 (49%), Gaps = 16/150 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ Y G G + +A+ +VL VE+ +V A+ N+ NHV+N + + + Q Sbjct: 317 VIDAYSGIGTIGITVAKQVRKVLGVEVVPGAVADAQLNMRMNHVDNAEYILADAP---QQ 373 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCR 330 + +E N D+ +FVDPPR GL +A + A I+Y+SCNP +L R Sbjct: 374 FKLWQEANLQPDV---------VFVDPPRRGLTNALIKATTDMAPDRIVYVSCNPVTLVR 424 Query: 331 DLSIL--STTHTIERLALFDQFPYTRHMEC 358 D S L H + DQFP T H+E Sbjct: 425 DASELVQQGYHIDGPVLPVDQFPQTSHVES 454 >gi|154685168|ref|YP_001420329.1| YefA [Bacillus amyloliquefaciens FZB42] gi|154351019|gb|ABS73098.1| YefA [Bacillus amyloliquefaciens FZB42] Length = 464 Score = 75.9 bits (185), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 48/155 (30%), Positives = 77/155 (49%), Gaps = 19/155 (12%) Query: 209 IQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266 +QG+ +++ YCG G SL LA+ +V VEI ++E A+ N N + N + + Sbjct: 309 LQGEETVIDAYCGIGTISLFLAKQAKKVYGVEIVPEAIEDAKRNAELNGITNAEFAVGEA 368 Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCN 324 + +E T+ VDPPR G D+A + ++ P ++Y+SCN Sbjct: 369 ETVIPKWYKE------------GITADTLVVDPPRKGCDEALLRTIIDMKPKRVVYVSCN 416 Query: 325 PDSLCRDLSILSTT--HTIERLALFDQFPYTRHME 357 P +L RDL +L T+E + D FP+T H+E Sbjct: 417 PGTLARDLRMLEDGGYQTLE-VQPVDMFPHTNHVE 450 >gi|126175348|ref|YP_001051497.1| 23S rRNA 5-methyluridine methyltransferase [Shewanella baltica OS155] gi|226725386|sp|A3D7B5|RUMA_SHEB5 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|125998553|gb|ABN62628.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Shewanella baltica OS155] Length = 450 Score = 75.9 bits (185), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 53/186 (28%), Positives = 89/186 (47%), Gaps = 26/186 (13%) Query: 185 NSFTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240 +F Q N IN M ++W+ A + +L+L+CG GNFSL LA+ V+ VE Sbjct: 279 GNFVQVNGQINKAMVAQAMDWLAPA---LDERILDLFCGMGNFSLPLAKMGADVIGVEGV 335 Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY--RFKTIFVD 298 V AR N AN+++ + + D+ + + + + +D Sbjct: 336 AEMVTQARVNAKANNLDKLTFFHG---------------DLSADLSLEPWMGKIDKLLLD 380 Query: 299 PPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDLSI-LSTTHTIERLALFDQFPYTRHM 356 P R+G ++ + + P ++Y+SCNP SL RD ++ L + +++L L D FP T H+ Sbjct: 381 PARAGAFESLQWLKKMKPRKVVYVSCNPASLARDSAVLLERGYRLQQLGLIDMFPQTHHI 440 Query: 357 ECGVLL 362 E L Sbjct: 441 EAMALF 446 >gi|325274862|ref|ZP_08140877.1| 23S rRNA m(5)U1939 methyltransferase [Pseudomonas sp. TJI-51] gi|324100010|gb|EGB97841.1| 23S rRNA m(5)U1939 methyltransferase [Pseudomonas sp. TJI-51] Length = 452 Score = 75.9 bits (185), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 58/182 (31%), Positives = 85/182 (46%), Gaps = 17/182 (9%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 F Q NA +N M+E LA Q D +L+L+CG GNF+L LAR V+AVE + Sbjct: 281 GDFVQVNAQVNTAMIEQALAWLA-PQADERVLDLFCGLGNFALPLARQAREVVAVEGVQA 339 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302 V+ A NNV R + +Q L + F + +DPPR Sbjct: 340 MVD---RAAANARNNNVHNARFFQADLSQP---------LAGTGWAAEGFSAVLLDPPRD 387 Query: 303 GLDDATVGMVQ-AYPHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGV 360 G + G+ + ++Y+SCNP +L RD +L+ + + R + D FP T H+E Sbjct: 388 GAYEVVQGIARLKASRLVYVSCNPATLARDAQVLAGQGYRLTRAGILDMFPQTAHVEAMA 447 Query: 361 LL 362 L Sbjct: 448 LF 449 >gi|262369859|ref|ZP_06063186.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Acinetobacter johnsonii SH046] gi|262314898|gb|EEY95938.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Acinetobacter johnsonii SH046] Length = 462 Score = 75.9 bits (185), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 56/182 (30%), Positives = 89/182 (48%), Gaps = 24/182 (13%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLAR---HFDRVLAVEIA 240 + FTQ N+ IN M++ QG+ +L+L+CG GNFSL LAR +V+ VE + Sbjct: 283 HDFTQVNSTINPQMVKLACDLLDLKQGERVLDLFCGLGNFSLPLARCVGETGQVVGVEGS 342 Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFV 297 + V+ N N + +K F+Q + KD HS+ F + + Sbjct: 343 EEMVQRGAENAERNALGQLKF-------FSQDL--------TKDFSHHSWANQGFDALLI 387 Query: 298 DPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRH 355 DPPR+G ++ M I+Y+SCNP +L RD +L + + + + D F +T H Sbjct: 388 DPPRAGAEEIMHYMPNFGAKRIVYVSCNPATLARDAGLLVQQGYRLVKAGVMDMFTHTGH 447 Query: 356 ME 357 +E Sbjct: 448 VE 449 >gi|315645532|ref|ZP_07898656.1| RNA methyltransferase, TrmA family protein [Paenibacillus vortex V453] gi|315279010|gb|EFU42320.1| RNA methyltransferase, TrmA family protein [Paenibacillus vortex V453] Length = 532 Score = 75.9 bits (185), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 56/182 (30%), Positives = 82/182 (45%), Gaps = 18/182 (9%) Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 +F Q N V + E V AA G+ G +++ YCG G L LA + V +E + Sbjct: 358 AFFQLNPQQTVKLYESVRAAA-GLTGKETVIDAYCGTGTIGLWLAPYAKEVRGIETIPEA 416 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 VE A+ N N N ++E +E + I DPPR+G Sbjct: 417 VEDAKANAQRNGRANASFHVGQAEELLPRWVKE------------GMKPDVIIADPPRTG 464 Query: 304 LDDATVGMV-QAYPH-ILYISCNPDSLCRDLSI-LSTTHTIERLALFDQFPYTRHMECGV 360 LD + V + P +Y+SCNP +L +D + L + +E + D FP T H+EC V Sbjct: 465 LDSRFLETVLRTKPKRFVYVSCNPSTLAKDCKVLLDGGYELEWVQPVDMFPQTSHVECTV 524 Query: 361 LL 362 LL Sbjct: 525 LL 526 >gi|302338159|ref|YP_003803365.1| (uracil-5)-methyltransferase [Spirochaeta smaragdinae DSM 11293] gi|301635344|gb|ADK80771.1| (Uracil-5)-methyltransferase [Spirochaeta smaragdinae DSM 11293] Length = 391 Score = 75.9 bits (185), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 58/186 (31%), Positives = 91/186 (48%), Gaps = 15/186 (8%) Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 F Q N G+N + + + +L+LYCG+GN SL LAR RV +IA S++ Sbjct: 213 GFRQANEGVNKLLQNEIARFITQSEARVLDLYCGDGNLSLPLARQGCRVRGFDIATSSIK 272 Query: 246 AAR--YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 A + + + V R+ + E +AM++ ++ D + R I +DPPRSG Sbjct: 273 QANRLWRERSTDTHQVSYQRLDAMEAVKAMQQ----GAIRPFD--AERPDVILLDPPRSG 326 Query: 304 LDDATVGM----VQAYPHILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHMEC 358 + + GM ILY+SC+P +L RDL S + + + + D FP T H+E Sbjct: 327 V--GSEGMQALCTLKAQRILYLSCDPATLSRDLKSASAAGYHLLTVRAADMFPQTYHLES 384 Query: 359 GVLLVR 364 +L R Sbjct: 385 FAVLER 390 >gi|255657345|ref|ZP_05402754.1| putative RNA methyltransferase [Clostridium difficile QCD-23m63] Length = 453 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 47/156 (30%), Positives = 79/156 (50%), Gaps = 17/156 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + ++YCG G SL LA+ +V +EI +++ A+ N N+++N + ++E Sbjct: 309 VFDIYCGIGTISLFLAQKAKKVYGIEIIDDAIKDAKINAKLNNMHNAEFYVGKAEEIVPK 368 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330 M RE + + + VDPPR G D+ + +V P I+Y+SCNP +L R Sbjct: 369 MYREGKTANV------------VVVDPPRKGCDEKVLETIVSMSPERIVYVSCNPSTLAR 416 Query: 331 DLSILSTTHTIERLAL--FDQFPYTRHMECGVLLVR 364 DL L+ H + + D FP++ H+E L+ R Sbjct: 417 DLDYLN-VHGFKCVEAQPVDMFPHSTHVETIALIQR 451 >gi|104773610|ref|YP_618590.1| methyltransferase [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|103422691|emb|CAI97304.1| Methyltransferase [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] Length = 451 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 56/203 (27%), Positives = 92/203 (45%), Gaps = 20/203 (9%) Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFS 224 Y+D+++ L + SF Q N+ + + + + DL+ + Y G G Sbjct: 261 YIDDKIG----DLTFEISPQSFFQINSLQTPRLYKLAIDQAGLTKDDLIVDAYSGIGTIG 316 Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284 L A++ V VE+ K +V+ A+ N N ++N K ++E E Sbjct: 317 LSAAKYVKEVRGVEVVKAAVKDAKNNARLNQIHNAKYYVGKAEELMPKWAAE-------- 368 Query: 285 IDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCRDLSIL-STTHTI 341 + IFVDPPR GL + V+ P ++YISCNP +L RD+ +L +T Sbjct: 369 ----GLKTDVIFVDPPRKGLTKEFIDAAVKTGPKKVVYISCNPATLVRDMQLLMEAGYTT 424 Query: 342 ERLALFDQFPYTRHMECGVLLVR 364 + ++ D FP T H+E +L R Sbjct: 425 DLVSPVDMFPQTPHVESVTVLER 447 >gi|14591077|ref|NP_143152.1| hypothetical protein PH1259 [Pyrococcus horikoshii OT3] gi|50401322|sp|O58994|Y1259_PYRHO RecName: Full=Uncharacterized RNA methyltransferase PH1259 gi|3257678|dbj|BAA30361.1| 412aa long hypothetical protein [Pyrococcus horikoshii OT3] Length = 412 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 51/155 (32%), Positives = 78/155 (50%), Gaps = 21/155 (13%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +L+LY G G SL LA+ V VE+ SVE A+ + N +N F Q Sbjct: 277 VLDLYSGIGTLSLYLAKRGFEVTGVEVNGTSVEMAKRSAEINSINAT---------FIQG 327 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHIL-YISCNPDSLCRD 331 + +D ++ Y +T+ VDPPR GL + + +V+ P+ L Y+SCNP D Sbjct: 328 --------KAEDAELEGY--ETLIVDPPRKGLKEFSRRIVKKGPNTLIYVSCNPLRFILD 377 Query: 332 L-SILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 + LS + ++ L D FP+T H+E + LVR+ Sbjct: 378 YRNYLSEAYKVDDALLIDMFPHTPHIEAVIKLVRR 412 >gi|113478164|ref|YP_724225.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Trichodesmium erythraeum IMS101] gi|110169212|gb|ABG53752.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Trichodesmium erythraeum IMS101] Length = 485 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 60/236 (25%), Positives = 107/236 (45%), Gaps = 50/236 (21%) Query: 160 ICL-DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELY 217 +C+ R YV E+ + L ++ N+F Q N ++E V+ +++ + Y Sbjct: 268 VCVAGRFYVREKFS----GLEFQLTPNTFFQVNTKTTEKLVEIVIQELALSNSEIIVDAY 323 Query: 218 CGNGNFSLVLARHFDRV-------------------------LAVEIAKPSVEAARYNIA 252 CG G F L LA++ +V + +E+ ++E A++N Sbjct: 324 CGVGTFCLSLAKYLQQVDINYNESLNIVTEDLSEIKLRKSMVIGLEVQGVAIEQAKFNAK 383 Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GM 311 NH+ NV F + + ER +L+ + + +DPPR G D + + + Sbjct: 384 INHLTNV--------HFYEG-KVERLLPQLE------VKPDIVLLDPPRKGCDRSVLETL 428 Query: 312 VQAYPH-ILYISCNPDSLCRDLSILSTT--HTIERLALFDQFPYTRHMECGVLLVR 364 ++ P I+YISC P +L RDL L +T + + ++ D FP T H+EC L++ Sbjct: 429 LEILPERIVYISCKPATLARDLKFLCSTGKYCLNKVQPVDFFPQTAHVECAAFLIK 484 >gi|76787486|ref|YP_329132.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus agalactiae A909] gi|77406057|ref|ZP_00783133.1| RNA methyltransferase, TrmA family [Streptococcus agalactiae H36B] gi|76562543|gb|ABA45127.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus agalactiae A909] gi|77175337|gb|EAO78130.1| RNA methyltransferase, TrmA family [Streptococcus agalactiae H36B] Length = 451 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 99/387 (25%), Positives = 167/387 (43%), Gaps = 54/387 (13%) Query: 9 QYEQQLAEKVDRLRQMMLAFQ---VPNLQIFRS----EPIHYRMRAEFHIWHDGDDLYHI 61 QY++QL K D +RQ ++ F+ N +I ++ EP HYR + +F + G ++ Sbjct: 88 QYDKQLEFKTDVIRQALMKFKPEGYENYEIRKTIGMPEPEHYRAKLQFQVRSFGGNVKAG 147 Query: 62 MFDQQTKERMRI-DYFMPGSL---LINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQA 117 ++ Q T + I D + SL +IN + E++ +L K+ + + + QA Sbjct: 148 LYAQGTHRLIDIKDCLVQDSLTQEMINRVA-ELLGKYKLPIYNERKIAGVRTVMIRRAQA 206 Query: 118 I--VTLIY---HRL-LDDAWRECAIRLRDALHARKYQIQLIGRANK------TKICLDRD 165 V LI+ RL DD E +R+ + + + T++ ++ Sbjct: 207 SGEVQLIFITSKRLDFDDVVIEL---VREFPELKTVAVNINASKTSDIYGQITEVIWGQE 263 Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAG-INVHMLEWVLAATKGIQGDLLELYCGNGNFS 224 ++E + G +L R +F Q N + E V A DL++ YCG G Sbjct: 264 SINEEVLDYGFSLSPR----AFYQLNPKQTQILYSEAVKALDVKDDDDLIDAYCGVGTIG 319 Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284 L A V ++I +++ A+ N A H+ FT E + +D Sbjct: 320 LAFAGKVKSVRGMDIIPEAIQDAKEN--ALHMG-----------FTNT---HYEAGKAED 363 Query: 285 ID----IHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILSTT 338 I +R + VDPPR+GLDD + + P ++Y+SCN +L RDL L+ Sbjct: 364 IIPRWYSEGFRANALIVDPPRTGLDDKLLNTILKMPPEKMVYVSCNTSTLARDLVTLTKV 423 Query: 339 HTIERLALFDQFPYTRHMECGVLLVRK 365 + + + D FP+T E V L RK Sbjct: 424 YHVHYIQSVDMFPHTARTEAVVKLQRK 450 >gi|94988943|ref|YP_597044.1| tRNA (Uracil-5-) -methyltransferase [Streptococcus pyogenes MGAS9429] gi|94992837|ref|YP_600936.1| tRNA (Uracil-5-) -methyltransferase [Streptococcus pyogenes MGAS2096] gi|94542451|gb|ABF32500.1| tRNA (Uracil-5-) -methyltransferase [Streptococcus pyogenes MGAS9429] gi|94546345|gb|ABF36392.1| tRNA (Uracil-5-) -methyltransferase [Streptococcus pyogenes MGAS2096] Length = 451 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 88/382 (23%), Positives = 156/382 (40%), Gaps = 46/382 (12%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFR-------SEPIHYRMRAEFHIWHDGDDLYHIM 62 Y +QL K D +RQ + F+ + F +P HYR + +F + G + + Sbjct: 89 YPKQLDFKDDVIRQALKKFKPTGYEQFEIRPTLGMKKPDHYRAKLQFQLRSFGGTVKAGL 148 Query: 63 FDQQTKERMRIDYFMPGSLLINALM---IEMMATIRLEPLLRAKLFQIDYL----TSQSD 115 F Q + + ID + L ++ +++ +L K+ I + SD Sbjct: 149 FSQGSHRLVPIDNCLVQDQLTQDIINKITQLVDKYKLPIYNERKIAGIRTIMVRKAQASD 208 Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIG-RANKTKICLDRDYVDERLTVA 174 Q + ++ + + A R L Q++ + +N++K Y DE + Sbjct: 209 QVQIIVVSSKEVRLA------RFIGELTKAFPQVKTVALNSNRSK--SSEIYGDETEILW 260 Query: 175 GRTLIYRQI--------ENSFTQPNAG-INVHMLEWVLAATKGIQGDLLELYCGNGNFSL 225 G+ I+ ++ +F Q N V E V A G + +++ YCG G+ Sbjct: 261 GQEAIHEEVLDYGFALSPRAFYQLNPQQTEVLYGEVVKALDVGSKDHIIDAYCGVGSIGF 320 Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285 A V ++I ++E A+ N A +N + +A + E + Sbjct: 321 AFAGKVKSVRGMDIIPEAIEDAQKNAKAMGFDNA---------YYEAGKAEDIIPKWYK- 370 Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTTHTIER 343 YR I VDPPR+GLDD + + Y ++Y+SCN +L RDL L+ + + Sbjct: 371 --QGYRADAIIVDPPRTGLDDKLLKTILHYQPKQMVYVSCNTSTLARDLVQLTKVYDVHY 428 Query: 344 LALFDQFPYTRHMECGVLLVRK 365 + D FP+T E V L ++ Sbjct: 429 IQSVDMFPHTARTEAVVKLQKR 450 >gi|332867187|ref|ZP_08437452.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Acinetobacter baumannii 6013113] gi|332734126|gb|EGJ65258.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Acinetobacter baumannii 6013113] Length = 463 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 58/191 (30%), Positives = 97/191 (50%), Gaps = 32/191 (16%) Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHF---DRVLAVEIAKP 242 FTQ NA +N M++ + QG+ +L+L+CG GNFSL LAR +V+ VE ++ Sbjct: 286 FTQVNATVNEQMVQLACELLQLQQGERVLDLFCGLGNFSLPLARCVGAKGQVVGVEASEE 345 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDP 299 V+ A N N++ + + F+Q + D HS+ F + +DP Sbjct: 346 MVQRATDNAKRNNL-------VQASFFSQDL--------TIDFSHHSWANQGFDALLIDP 390 Query: 300 PRSGLDDATVGMVQAYPH-----ILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYT 353 PR+G + ++Q P+ I+Y+SCNP +L RD +L + +++ A+ D F +T Sbjct: 391 PRAGAYE----IMQYVPNFGAKRIVYVSCNPATLARDAGVLVQHGYQLKKAAVMDMFTHT 446 Query: 354 RHMECGVLLVR 364 H+E L + Sbjct: 447 EHVESIALFEK 457 >gi|323144161|ref|ZP_08078797.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Succinatimonas hippei YIT 12066] gi|322416069|gb|EFY06767.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Succinatimonas hippei YIT 12066] Length = 447 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 51/175 (29%), Positives = 86/175 (49%), Gaps = 15/175 (8%) Query: 186 SFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 +F Q N +N +++ VL A K G +L+L+CG GNF+L LA+ VL ++I + Sbjct: 278 AFVQVNKEVNKDLIKLVLDAVKPHPGMKVLDLFCGLGNFTLPLAKEGAEVLGIDIVSSMI 337 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 + A+ N N ++N K E EF + + + ++ + +DP R G Sbjct: 338 KDAQKNAELNDLHNAKFA---------VADLEDEFEKQQWAKV---KYDAVVLDPGRMGA 385 Query: 305 DDATVGMVQ-AYPHILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHME 357 A + + + P I+ ISCNP + RD+ ++ + + I D FP T H+E Sbjct: 386 KRAALFVSKLKIPKIVMISCNPLAASRDIRELIKSGYKITAWGALDMFPRTSHIE 440 >gi|332974302|gb|EGK11234.1| 23S rRNA (uracil-5-)-methyltransferase [Desmospora sp. 8437] Length = 465 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 51/158 (32%), Positives = 76/158 (48%), Gaps = 19/158 (12%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G L LA+ RVL VE +VE AR+N N +++ ++E Sbjct: 314 IIDAYCGIGTIGLYLAKEAARVLGVESIPQAVEDARHNAELNGIDHASFEAGPAEEVMPR 373 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSG----LDDATVGMVQAYPHILYISCNPDSL 328 RE R + VDPPR G L DA V M + ++Y+SCNP +L Sbjct: 374 WARE------------GIRPDVMIVDPPRKGCAPELLDAAVRM--SPDRLVYVSCNPATL 419 Query: 329 CRDLSILST-THTIERLALFDQFPYTRHMECGVLLVRK 365 RD + L +T ++ D FP+T H+EC + R+ Sbjct: 420 ARDAAYLKERGYTNCQVQPVDMFPHTSHVECVTVFRRE 457 >gi|255308421|ref|ZP_05352592.1| putative RNA methyltransferase [Clostridium difficile ATCC 43255] Length = 452 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 45/157 (28%), Positives = 80/157 (50%), Gaps = 17/157 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + ++YCG G SL LA+ +V +EI +++ A+ N N+++N + ++E Sbjct: 309 VFDIYCGIGTISLFLAQKAKKVYGIEIIDDAIKDAKINAKLNNIHNAEFYVGKAEEIVPK 368 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330 M RE + + + VDPPR G D+ + +V P I+Y+SCNP +L R Sbjct: 369 MYREGKTANV------------VVVDPPRKGCDEKVLETIVSMNPERIVYVSCNPSTLAR 416 Query: 331 DLSILSTTHTIERLAL--FDQFPYTRHMECGVLLVRK 365 DL L+ H + + D FP++ H+E ++++ Sbjct: 417 DLDYLN-VHGFKCVEAQPVDMFPHSTHVETVAKIIKQ 452 >gi|118586769|ref|ZP_01544205.1| RNA methyltransferase, TrmA family [Oenococcus oeni ATCC BAA-1163] gi|118432762|gb|EAV39492.1| RNA methyltransferase, TrmA family [Oenococcus oeni ATCC BAA-1163] Length = 458 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 47/150 (31%), Positives = 75/150 (50%), Gaps = 16/150 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ Y G G L +AR +V+ VE+ P+VE A+ N+ AN + N + + + E Sbjct: 314 VIDAYSGIGTIGLSIARQVRKVIGVEVVAPAVEDAKKNMLANRIENAEYIAADAAE---- 369 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM--VQAYPHILYISCNPDSLCR 330 +F + + + +FVDPPR GL + + V A +YISCNP +L R Sbjct: 370 -----QFIKWAAAGV---KPDVVFVDPPRKGLTNDLIQSLGVMAPLKFVYISCNPATLAR 421 Query: 331 DLSILST-THTIERLAL-FDQFPYTRHMEC 358 D ++ + I + L DQFP T H+E Sbjct: 422 DAVLIKEQGYRISKAVLPIDQFPQTMHVES 451 >gi|37524901|ref|NP_928245.1| 23S rRNA 5-methyluridine methyltransferase [Photorhabdus luminescens subsp. laumondii TTO1] gi|50401496|sp|Q7N839|RUMA_PHOLL RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|36784327|emb|CAE13204.1| 23S rRNA (Uracil-5-)-methyltransferase rumA (23S rRNA(M-5-U1939)-methyltransferase) [Photorhabdus luminescens subsp. laumondii TTO1] Length = 438 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 53/184 (28%), Positives = 86/184 (46%), Gaps = 21/184 (11%) Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 F Q N +N M +EW+ ++L+L+CG GNF+L + R V+ VE Sbjct: 270 FIQVNDQVNQQMVAQAIEWLDLQPND---NVLDLFCGMGNFTLPIGRIVQSVVGVEGVAT 326 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302 V +YN N+++N+ E +A + + +L F + +DP R+ Sbjct: 327 LVANGQYNAKINNLDNISFCH----ENLEADIHHQPWAKLG--------FNKVLLDPARA 374 Query: 303 GLDDATVGMVQAYPH-ILYISCNPDSLCRDLSI-LSTTHTIERLALFDQFPYTRHMECGV 360 G +V+ P ++Y+SCNP +L RD I L + I + + D FP+T H+E Sbjct: 375 GAVGVMSHIVELVPEKVVYVSCNPTTLARDSKILLEAGYQIISVRMLDMFPHTGHLESMA 434 Query: 361 LLVR 364 L R Sbjct: 435 LFSR 438 >gi|295397699|ref|ZP_06807772.1| 23S rRNA (uracil-5-)-methyltransferase [Aerococcus viridans ATCC 11563] gi|294974068|gb|EFG49822.1| 23S rRNA (uracil-5-)-methyltransferase [Aerococcus viridans ATCC 11563] Length = 469 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 98/389 (25%), Positives = 160/389 (41%), Gaps = 56/389 (14%) Query: 9 QYEQQLAEKVDRLRQMML--AFQVPNLQ--IFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 +YE QL K + ++ + F ++ I P YR + E DG H Sbjct: 101 KYEDQLTHKENLIKGYLAEAGFDTNLVKPIIGMDNPYRYRNKMELTFGVDGSLGMH---- 156 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRL---------------EPLLRAKLFQIDY 109 QQ R ID + S+L MI + + E LL L + + Sbjct: 157 QQGNYRKVID--LEDSILAPEEMIAIKKVVSKWQKDYQFPGLDKDTKEGLLCNLLMRQSF 214 Query: 110 LTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD------ 163 T + AI L +A + RL +A R Q + + T+ D Sbjct: 215 ATGEIMVAIYALEAPDAYTEAIEDLTQRLLNA-QPRIVSFQWLKKNGGTERSYDNDVYLI 273 Query: 164 --RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL--LELYCG 219 RDY+++ L + +R ++F Q N M+E + + ++ D+ L+L+CG Sbjct: 274 HGRDYINDEL----QGFKFRIWPDTFFQVNPVQANKMVETAIDMAQ-VKEDMKVLDLFCG 328 Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279 G FSL LA + +EI + S+ +A+ N A N+++N F A Sbjct: 329 IGTFSLPLAAASKSLAGIEIVENSINSAKRNAADNNLDNT---------FFMASDARAGL 379 Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLS-ILS 336 L D+ + + +DPPR+G + + + I+Y+SC P SL DL +L Sbjct: 380 RVLPDV---WGQPDLLLLDPPRNGAGGKVMRAIGRFGTDRIVYVSCGPKSLAADLVWLLD 436 Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVRK 365 + + + DQFP+T H+E VLL +K Sbjct: 437 FGYEVVEVQPIDQFPHTAHLENIVLLKKK 465 >gi|325118195|emb|CBZ53746.1| Methyltransferase, related [Neospora caninum Liverpool] Length = 665 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 49/163 (30%), Positives = 79/163 (48%), Gaps = 19/163 (11%) Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274 + YCG G F+L FD V+ +++ S+E A++N N + +K F ++ Sbjct: 487 DCYCGVGLFALACHDEFDEVVGFDVSPSSIELAKHNAQFNSKWRARFEVSDAKTFFESFG 546 Query: 275 REREFNRLKDIDIHSYRFKTIFV--DPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330 HS +FV DPPR G D + +++ P I+YISC+P + R Sbjct: 547 AR-----------HSSASSRLFVVLDPPRKGCDAEFLQSLLKLKPERIVYISCHPATQAR 595 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRKPS----GW 369 DL + + ++ + FD FP++RH+EC + L R S GW Sbjct: 596 DLKAFLSLYAVKNVQPFDMFPHSRHIECVITLERTASEQAHGW 638 >gi|71415097|ref|XP_809627.1| hypothetical protein [Trypanosoma cruzi strain CL Brener] gi|70874038|gb|EAN87776.1| hypothetical protein, conserved [Trypanosoma cruzi] Length = 568 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 61/196 (31%), Positives = 90/196 (45%), Gaps = 27/196 (13%) Query: 185 NSFTQPN-AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 SF Q N +G+ + + E A G + LL+L CG G L LA+H RV+ +E+ + + Sbjct: 375 TSFFQVNTSGMELLLCETAKVAALGPKTTLLDLCCGTGVIGLTLAKHVKRVIGIELVESA 434 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFV---DPP 300 V AR N N + NV + + N L + D KT V DPP Sbjct: 435 VSDARQNAKRNDIANVTFCSGRVEHLLPDI-----INSLPEED------KTDIVAILDPP 483 Query: 301 RSGLDDATVGMVQAYPHI---LYISCNPDSLCRDLSILSTTHT-------IERLALF--D 348 R+G+ + ++ P I +YISC +L RD L+ + T E +A F D Sbjct: 484 RAGVTPTVLKWIRGTPTIRRVVYISCEQKALERDCPSLTKSTTKAYRGLPFELVASFAVD 543 Query: 349 QFPYTRHMECGVLLVR 364 FP+T H+E +L R Sbjct: 544 LFPHTPHVEMVAVLAR 559 >gi|313608260|gb|EFR84264.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria monocytogenes FSL F2-208] Length = 453 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 44/153 (28%), Positives = 72/153 (47%), Gaps = 15/153 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G+ SL LA+ V VEI +++ AR N N + N ++E A Sbjct: 310 VIDAYCGIGSISLCLAKKAKHVYGVEIVDQAIQDARANAELNELTNTTFETGKAEEVIPA 369 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330 + + VDPPR G D+ + + A ++Y+SCNP +L R Sbjct: 370 WYKA------------GIEADVLVVDPPRKGCDEKLLETILAMKPKKVVYVSCNPGTLAR 417 Query: 331 DLSILS-TTHTIERLALFDQFPYTRHMECGVLL 362 D+ IL+ + +++ D FP T H+E +L Sbjct: 418 DMKILTDGGYVAKKVQPVDMFPMTTHIEAVTVL 450 >gi|238786792|ref|ZP_04630593.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Yersinia frederiksenii ATCC 33641] gi|238725160|gb|EEQ16799.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Yersinia frederiksenii ATCC 33641] Length = 425 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 55/203 (27%), Positives = 90/203 (44%), Gaps = 31/203 (15%) Query: 180 YRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLAR 229 Y QIE F Q N +N M+ + +Q D +L+L+CG GNF+L LA+ Sbjct: 236 YYQIEGLRLAFHPRDFIQVNDAVNQQMVAQAIVWLD-VQPDERVLDLFCGMGNFTLPLAK 294 Query: 230 HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHS 289 V+ VE V +YN N + N N DI Sbjct: 295 LAREVVGVEGVAALVANGQYNAFNNALPNASFFHE---------------NLESDISCQP 339 Query: 290 YR---FKTIFVDPPRSGLDDATVGMVQAYPH-ILYISCNPDSLCRDLSI-LSTTHTIERL 344 + F + +DP R+G +++ P ++Y+SCNP +L RD + L+ + + ++ Sbjct: 340 WATQGFDKVLLDPARAGAAGVMSHIIKLAPKRVVYVSCNPTTLARDSQVLLAAGYRLAQV 399 Query: 345 ALFDQFPYTRHMECGVLLVRKPS 367 + D FP+T H+E L +++P Sbjct: 400 RMLDMFPHTGHLESMALFIQEPG 422 >gi|78223042|ref|YP_384789.1| 23S rRNA methyltransferase/RumA [Geobacter metallireducens GS-15] gi|78194297|gb|ABB32064.1| 23S rRNA m(5)U-1939 methyltransferase [Geobacter metallireducens GS-15] Length = 440 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 91/366 (24%), Positives = 158/366 (43%), Gaps = 46/366 (12%) Query: 17 KVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYF 76 + R+ +A VP+ P YR R +F + L + + + + I Sbjct: 101 RFGRIESERVARAVPS-----DSPYGYRSRVQFKVRWTAGKLQMGFYRRGSHYVVDIPE- 154 Query: 77 MPGSLLINALMIEMMATIRLEPLLRA-----KLFQIDYLTSQSDQAIVTLIYHRLLD--D 129 G + N+ + +++A IR P++ ++ Q+D + D + + H + D D Sbjct: 155 --GCAICNSALNQVLAEIR--PVISCFAEPDRIPQVD--VAVGDDGVTLAVVHYIGDNRD 208 Query: 130 AWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLT------VAGRTLIYRQI 183 R R L A GR + D + R + TL + + Sbjct: 209 RARAHFTACRSDLPAVGGLHLQCGRKESIEPLWGDDALTYRFPGDFLPKLPSMTLSFSR- 267 Query: 184 ENSFTQPNAGINVHMLEWV--LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241 F+Q N N +L V +A G + LL+L+CGNGNF++ L+R+ V+ +E Sbjct: 268 -GGFSQVNYRQNRELLRAVHRMADLTG-EERLLDLFCGNGNFAIPLSRYAMAVVGIEDYG 325 Query: 242 PSVEAARYNIAANHVNNVKIVRM-SSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300 PS+E AR N AAN ++ +R ++ Q + RE+ ++ + +DPP Sbjct: 326 PSLEDARRNAAANGAGKIEFIRSDAAAGVRQLVSREKHYS-------------VVVLDPP 372 Query: 301 RSGLDDATVGMVQAYPH-ILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMEC 358 R+G +A + P ++Y+SC+P +L RDL + + + + D FP T H+E Sbjct: 373 RTGAKEAVTEVTSLRPERVVYVSCDPATLGRDLGLFRKSGYDVRECLPVDMFPQTFHIES 432 Query: 359 GVLLVR 364 LL R Sbjct: 433 VTLLSR 438 >gi|295109231|emb|CBL23184.1| 23S rRNA m(5)U-1939 methyltransferase [Ruminococcus obeum A2-162] Length = 462 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 61/218 (27%), Positives = 106/218 (48%), Gaps = 27/218 (12%) Query: 154 RANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPN---AGINVHMLEWVLAATKGIQ 210 ++++T+I +DY E L L +R SF QPN A + +++ + T G++ Sbjct: 266 QSDETRILYGQDYFYETLL----GLKFRISTFSFFQPNSLAAEVLYNIVREYIQNTSGME 321 Query: 211 GDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270 + +LY G G + +LA V+ +EI + +V+AAR N N ++N + + Sbjct: 322 --VFDLYSGTGTIAQLLAPVAKEVIGIEIIEDAVKAARENAKLNGLDNCRFIAG------ 373 Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSL 328 + LK +D + + I +DPPR G+ + + +Y I+Y+SC SL Sbjct: 374 ---------DVLKVLDDLTEKPDVIVLDPPRDGIHPKALPKILSYGVNRIVYVSCKATSL 424 Query: 329 CRDL-SILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 RDL + L+ + +E+ DQF T E LLV++ Sbjct: 425 ARDLEAFLAAGYRLEKACCVDQFCETVWTEAVALLVKE 462 >gi|308180110|ref|YP_003924238.1| RNA methyltransferase [Lactobacillus plantarum subsp. plantarum ST-III] gi|308045601|gb|ADN98144.1| RNA methyltransferase [Lactobacillus plantarum subsp. plantarum ST-III] Length = 457 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 53/164 (32%), Positives = 80/164 (48%), Gaps = 18/164 (10%) Query: 208 GIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265 G+ G+ +++ Y G G SL +A+H +V VEI +++ AR N N + N V S Sbjct: 305 GLTGNETVIDAYSGIGTISLTMAQHAKQVYGVEIVPAAIDNARQNADKNGITNATFVLDS 364 Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD-DATVGMVQAYPH-ILYISC 323 ++ +AM + + D+ I VDPPR GLD D + P ++YISC Sbjct: 365 AE---KAMAKWQADGVKPDV---------IVVDPPRKGLDADFIKSAGEMAPKRVVYISC 412 Query: 324 NPDSLCRDLSILS--TTHTIERLALFDQFPYTRHMECGVLLVRK 365 NP +L RD + H + DQFP T H+E +L R+ Sbjct: 413 NPSTLVRDAQRFAEYGYHISAPVQPVDQFPQTPHIESVTVLERE 456 >gi|255094342|ref|ZP_05323820.1| putative RNA methyltransferase [Clostridium difficile CIP 107932] gi|255316095|ref|ZP_05357678.1| putative RNA methyltransferase [Clostridium difficile QCD-76w55] gi|255518756|ref|ZP_05386432.1| putative RNA methyltransferase [Clostridium difficile QCD-97b34] gi|260684898|ref|YP_003216183.1| putative RNA methyltransferase [Clostridium difficile CD196] gi|260688556|ref|YP_003219690.1| putative RNA methyltransferase [Clostridium difficile R20291] gi|260211061|emb|CBA66419.1| putative RNA methyltransferase [Clostridium difficile CD196] gi|260214573|emb|CBE07127.1| putative RNA methyltransferase [Clostridium difficile R20291] Length = 452 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 45/157 (28%), Positives = 80/157 (50%), Gaps = 17/157 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + ++YCG G SL LA+ +V +EI +++ A+ N N+++N + ++E Sbjct: 309 VFDIYCGIGTISLFLAQKAKKVYGIEIIDDAIKDAKINAKLNNIHNAEFYVGKAEEIVPK 368 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330 M RE + + + VDPPR G D+ + +V P I+Y+SCNP +L R Sbjct: 369 MYREGKTANV------------VVVDPPRKGCDEKVLETIVSMNPERIVYVSCNPSTLAR 416 Query: 331 DLSILSTTHTIERLAL--FDQFPYTRHMECGVLLVRK 365 DL L+ H + + D FP++ H+E ++++ Sbjct: 417 DLDYLN-VHGFKCVEAQPVDMFPHSTHVETVAKIIKQ 452 >gi|149181245|ref|ZP_01859743.1| YfjO [Bacillus sp. SG-1] gi|148850970|gb|EDL65122.1| YfjO [Bacillus sp. SG-1] Length = 467 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 50/184 (27%), Positives = 87/184 (47%), Gaps = 17/184 (9%) Query: 186 SFTQPNAGINVHMLEWV--LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 +F Q N +H+ V AA G + L++ YCG G + L+ + +++ K Sbjct: 296 AFFQLNPTQTIHLYNEVRDAAALTGHE-KLVDAYCGVGTIGMWLSNGAKEIRGMDVVKEG 354 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 +E AR N ++N +++E+ + E +R + VDPPR+G Sbjct: 355 IENARKNSKKFGMDNATYEVGTAEEWLPKWKAE------------GWRPDVVVVDPPRTG 402 Query: 304 LDDATVGMV-QAYPH-ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVL 361 + + + + + P +Y+SCNP +L +DL LS ++ +E + D FP T H+E Sbjct: 403 CEPSFLNTILKVKPKKFIYVSCNPSTLAKDLKTLSKSYDVEYIQPVDMFPQTAHVESVAK 462 Query: 362 LVRK 365 LV K Sbjct: 463 LVLK 466 >gi|167626443|ref|YP_001676943.1| 23S rRNA 5-methyluridine methyltransferase [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|167596444|gb|ABZ86442.1| RNA methyltransferase, TrmA family [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 449 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 51/189 (26%), Positives = 95/189 (50%), Gaps = 17/189 (8%) Query: 173 VAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHF 231 VAG + + N FTQ N IN M++ + + + D +++L+CG GNF+L ++++ Sbjct: 266 VAGINIGFEP--NDFTQVNNDINKKMIKRAIDLLEISENDSIIDLFCGLGNFTLPISQYA 323 Query: 232 DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291 V+ VE + V A+ A N+++NVK + ++ + FN ++ Sbjct: 324 KTVIGVEGEQTMVNRAKETAANNNISNVKFY---AANLFESFEDKEWFN--------NFE 372 Query: 292 FKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSIL--STTHTIERLALFD 348 + + +DPPR+G + + + I+Y+SC+ +L RD IL + + + D Sbjct: 373 YNKMLLDPPRAGAQEVCSNIEKFDVERIVYVSCDTATLARDAGILVNDKGYKLVSAGVMD 432 Query: 349 QFPYTRHME 357 FP+T H+E Sbjct: 433 MFPHTMHVE 441 >gi|297622046|ref|YP_003710183.1| 23S rRNA (Uracil-5-)-methyltransferase [Waddlia chondrophila WSU 86-1044] gi|297377347|gb|ADI39177.1| 23S rRNA (Uracil-5-)-methyltransferase [Waddlia chondrophila WSU 86-1044] Length = 441 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 50/172 (29%), Positives = 84/172 (48%), Gaps = 22/172 (12%) Query: 197 HMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV 256 +++W A KG + +L+ YCG G SL+LAR RV+ VE ++ A N + N + Sbjct: 288 QVIDW--AELKGGE-RVLDAYCGVGTLSLLLARKAGRVVGVECVPQAIADAERNASLNCL 344 Query: 257 NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY- 315 NV V ++++ Q+ + R + ++PPR G + + Sbjct: 345 ANVSFVCAEAEKWIQS----------------AERMDLVVLNPPRKGCHPEMIKAIGKMR 388 Query: 316 -PHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRK 365 ++Y+SC+P +L RDL++L + + I+ FD FP T H+E V L K Sbjct: 389 PTRLIYVSCDPATLARDLAMLQESGYKIDGACPFDMFPQTAHVETVVKLSTK 440 >gi|94994824|ref|YP_602922.1| tRNA (uracil-5-) -methyltransferase [Streptococcus pyogenes MGAS10750] gi|94548332|gb|ABF38378.1| tRNA (Uracil-5-) -methyltransferase [Streptococcus pyogenes MGAS10750] Length = 451 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 88/382 (23%), Positives = 156/382 (40%), Gaps = 46/382 (12%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFR-------SEPIHYRMRAEFHIWHDGDDLYHIM 62 Y +QL K D +RQ + F+ + F +P HYR + +F + G + + Sbjct: 89 YPKQLDFKDDVIRQALKKFKPTGYEQFEIRPTLGMKKPDHYRAKLQFQLRSFGGTVKAGL 148 Query: 63 FDQQTKERMRIDYFMPGSLLINALM---IEMMATIRLEPLLRAKLFQIDYL----TSQSD 115 F Q + + ID + L ++ +++ +L K+ I + SD Sbjct: 149 FSQGSHRLVPIDNCLVQDQLTQDIINKITQLVDKYKLPIYNERKIAGIRTIMVRKAQASD 208 Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIG-RANKTKICLDRDYVDERLTVA 174 Q + ++ + + A R L Q++ + +N++K Y DE + Sbjct: 209 QVQIIVVSSKEVRLA------RFIGELTKAFPQVKTVALNSNRSK--SSEIYGDETEILW 260 Query: 175 GRTLIYRQI--------ENSFTQPNAG-INVHMLEWVLAATKGIQGDLLELYCGNGNFSL 225 G+ I+ ++ +F Q N V E V A G + +++ YCG G+ Sbjct: 261 GQEAIHEEVLDYGFALSPRAFYQLNPQQTEVLYGEVVKALDVGSKDHIIDAYCGVGSIGF 320 Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285 A V ++I ++E A+ N A +N + +A + E + Sbjct: 321 TFAGKVKSVRGMDIIPEAIEDAQKNAKAMGFDNA---------YYEAGKAEDIIPKWYK- 370 Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTTHTIER 343 YR I VDPPR+GLDD + + Y ++Y+SCN +L RDL L+ + + Sbjct: 371 --QGYRADAIIVDPPRTGLDDKLLKTILHYQPKQMVYVSCNTSTLARDLVQLTKIYDVHY 428 Query: 344 LALFDQFPYTRHMECGVLLVRK 365 + D FP+T E V L ++ Sbjct: 429 IQSVDMFPHTARTEAVVKLQKR 450 >gi|260437263|ref|ZP_05791079.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Butyrivibrio crossotus DSM 2876] gi|292810573|gb|EFF69778.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Butyrivibrio crossotus DSM 2876] Length = 453 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 63/216 (29%), Positives = 99/216 (45%), Gaps = 31/216 (14%) Query: 158 TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL---- 213 TK+ +DY+ E L L ++ SF Q N+ E + T+ G++ Sbjct: 259 TKVLYGKDYIYEELL----GLKFKITPFSFFQTNS----LGAEVLYTKTREFVGEIDNQV 310 Query: 214 -LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +LY G G + +LA +V+ VEI + +V AAR N N ++N EF Sbjct: 311 VFDLYSGTGTIAQILAPVAKKVVGVEIIEEAVVAARENARLNGLDNC--------EFIAG 362 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCR 330 + LK ID + I +DPPR G+ + + + I+Y+SC P SL R Sbjct: 363 -------DVLKVIDDIKDKPDMIVLDPPRDGIHPKAIDKIIDFGVNKIVYVSCKPTSLAR 415 Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVRK 365 D+ I + ++++ D FP T H+E VL+ RK Sbjct: 416 DIEIFEARGYKVKKVCCVDMFPGTGHVETVVLMSRK 451 >gi|217964101|ref|YP_002349779.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria monocytogenes HCC23] gi|290893407|ref|ZP_06556392.1| RNA methyltransferase [Listeria monocytogenes FSL J2-071] gi|217333371|gb|ACK39165.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria monocytogenes HCC23] gi|290557058|gb|EFD90587.1| RNA methyltransferase [Listeria monocytogenes FSL J2-071] gi|307571331|emb|CAR84510.1| RNA methyltransferase, TrmA/RumA/YefA-family [Listeria monocytogenes L99] Length = 453 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 44/153 (28%), Positives = 72/153 (47%), Gaps = 15/153 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G+ SL LA+ V VEI +++ AR N N + N ++E A Sbjct: 310 VIDAYCGIGSISLCLAKKAKHVYGVEIVDQAIQDARANAELNELTNTTFETGKAEEVIPA 369 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330 + + VDPPR G D+ + + A ++Y+SCNP +L R Sbjct: 370 WYKA------------GIEADVLVVDPPRKGCDEKLLETILAMKPKKVVYVSCNPGTLAR 417 Query: 331 DLSILS-TTHTIERLALFDQFPYTRHMECGVLL 362 D+ IL+ + +++ D FP T H+E +L Sbjct: 418 DMKILTDGGYVAKKVQPVDMFPMTTHIEAVTVL 450 >gi|17231146|ref|NP_487694.1| hypothetical protein alr3654 [Nostoc sp. PCC 7120] gi|50401636|sp|Q8YR05|Y3654_ANASP RecName: Full=Uncharacterized RNA methyltransferase alr3654 gi|17132787|dbj|BAB75353.1| alr3654 [Nostoc sp. PCC 7120] Length = 460 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 54/173 (31%), Positives = 86/173 (49%), Gaps = 21/173 (12%) Query: 202 VLAATKGIQG--DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259 V+ + +QG L++ YCG G +L L++ + + +E+ +V+ A N N +NNV Sbjct: 300 VIESQLNLQGHETLIDAYCGIGTLTLPLSKQVRQAIGLELQPEAVQQAIVNAQHNGINNV 359 Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-H 317 EF Q E+ ++ I + +DPPR G D + ++ + P Sbjct: 360 --------EF-QVGAVEKLLPKMGIIP------DVVLLDPPRKGCDRIVIESLLASKPAR 404 Query: 318 ILYISCNPDSLCRDLSILST--THTIERLALFDQFPYTRHMECGVLLVRKPSG 368 I+Y+SC +L RDL +L T T+TI+R+ D FP T H+E LV SG Sbjct: 405 IVYVSCKVATLARDLKLLCTDGTYTIQRIQSADFFPQTSHVEVAAFLVLSQSG 457 >gi|254520203|ref|ZP_05132259.1| RNA methyltransferase [Clostridium sp. 7_2_43FAA] gi|226913952|gb|EEH99153.1| RNA methyltransferase [Clostridium sp. 7_2_43FAA] Length = 453 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 56/214 (26%), Positives = 97/214 (45%), Gaps = 25/214 (11%) Query: 157 KTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LL 214 K + +DY+ E L L ++ SF Q N L ++ G D + Sbjct: 258 KVNLLFGKDYITENLL----GLQFKISPFSFFQTNTK-GAESLYSIVRDFMGESNDKVVF 312 Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274 +LYCG G + A + +V+ +E+ + +VEAA+ N N++NN + + E + ++ Sbjct: 313 DLYCGTGTIGQIAASNAKKVVGIELIEEAVEAAKENAKLNNLNNCEFLAGDVAEIIKTVK 372 Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDL 332 + + I +DPPRSG+ + V + I+Y+SCNP +L +L Sbjct: 373 DKPDI---------------IILDPPRSGVHPKALEYVIKFNAKEIIYVSCNPKTLVENL 417 Query: 333 -SILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 ++ + + + + D FP T H E V LV K Sbjct: 418 RDLIGAGYKVVQSTVKDMFPNTPHAEVVVKLVLK 451 >gi|300718123|ref|YP_003742926.1| 23S rRNA (Uracil-5-)-methyltransferase [Erwinia billingiae Eb661] gi|299063959|emb|CAX61079.1| 23S rRNA (Uracil-5-)-methyltransferase [Erwinia billingiae Eb661] Length = 438 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 58/183 (31%), Positives = 91/183 (49%), Gaps = 17/183 (9%) Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 F Q N +N M+ LA D +L+L+CG GNF+L + + V VE Sbjct: 269 FIQVNGALNEQMVSQALAWLDLQPEDRVLDLFCGMGNFTLPVGKVVKNVTGVEGVAALAA 328 Query: 246 AARYNIAANHVNNVKIVRMSSKE-FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 YN A N++NNV + + +E T+ FN+ + +DP R+G Sbjct: 329 KGGYNAALNNLNNVSFFQHNLEEDVTRQPWAAEGFNK-------------VLLDPARAGA 375 Query: 305 DDATVGMVQAYPH-ILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHMECGVLL 362 +++ P ++Y+SCNP +L RD S+L++ + +ER+ L D FP+T H+E VL Sbjct: 376 AGVMDHIIKLAPERVVYVSCNPTTLARDSQSLLTSGYQLERITLLDMFPHTGHVESMVLF 435 Query: 363 VRK 365 RK Sbjct: 436 SRK 438 >gi|262377436|ref|ZP_06070659.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Acinetobacter lwoffii SH145] gi|262307666|gb|EEY88806.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Acinetobacter lwoffii SH145] Length = 462 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 54/185 (29%), Positives = 86/185 (46%), Gaps = 18/185 (9%) Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 FTQ N+ IN M+ + QG+ +L+L+CG GNFSL LAR V + S E Sbjct: 285 FTQVNSSINPQMVRLACDLLQLQQGERVLDLFCGLGNFSLPLARCVGASGQVIAVEGSDE 344 Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDPPRS 302 R N + + S++ T KD H++ F + +DPPR+ Sbjct: 345 MVRRGAENAKNNGIAQISFYSQDLT------------KDFSHHTWANQGFDALLIDPPRA 392 Query: 303 GLDDATVGMVQ-AYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGV 360 G ++ + Q I+Y+SCNP +L RD +L + + + + D F +T H+E Sbjct: 393 GAEEVMHYIPQFGAKRIVYVSCNPATLARDAGLLVQQGYRLTQAGVMDMFTHTGHVESIA 452 Query: 361 LLVRK 365 L ++ Sbjct: 453 LFEKE 457 >gi|253699961|ref|YP_003021150.1| RNA methyltransferase, TrmA family [Geobacter sp. M21] gi|251774811|gb|ACT17392.1| RNA methyltransferase, TrmA family [Geobacter sp. M21] Length = 447 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 61/185 (32%), Positives = 89/185 (48%), Gaps = 21/185 (11%) Query: 179 IYRQIENSFTQPNAGINVHMLEWV--LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLA 236 I+ +SF Q N+G + E V LA KG + ++++YCG G SL LA V+ Sbjct: 268 IFNLSPHSFFQVNSGAARIIYEKVRELANLKGTE-RVIDVYCGIGGISLFLADQAREVVG 326 Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296 +E + +V A N A N V N E A+ E ++ I Sbjct: 327 IEFVEAAVADATINAALNRVENCHF------EAGDAVHLIDEIGEEGGAEL-------IV 373 Query: 297 VDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTT--HTIERLALFDQFPY 352 ++PPR G D+ + V A P I+Y+SC+P++L RDL ILS T+E + D FP Sbjct: 374 LNPPRKGCDEKVLRSVAAIKPPRIIYVSCSPETLARDLDILSGLGYRTVE-VHPVDMFPQ 432 Query: 353 TRHME 357 T H+E Sbjct: 433 TVHVE 437 >gi|281425818|ref|ZP_06256731.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella oris F0302] gi|281400079|gb|EFB30910.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella oris F0302] Length = 479 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 60/210 (28%), Positives = 92/210 (43%), Gaps = 26/210 (12%) Query: 169 ERLTVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGDLL--ELYC 218 E T G IY +E+ SF Q N H+ V A + G L +LY Sbjct: 283 ELTTFKGTDFIYETMEDLKFKVGPKSFYQTNTEQAYHLYS-VARAFAALTGKELVYDLYT 341 Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278 G G + +A +V+ +E ++E A+ N N ++N K Sbjct: 342 GTGTIANFVAHQAKQVIGIEYVPEAIEDAKENSKVNGIDNTLFYAGDMK----------- 390 Query: 279 FNRLKDIDIHSY-RFKTIFVDPPRSGLDDATVGMV-QAYPH-ILYISCNPDSLCRDLSIL 335 N L D IH + R I DPPR+G+ V ++ A P ++Y+SCNP + RDL ++ Sbjct: 391 -NILTDDFIHEHGRPDVIITDPPRAGMHPDVVQVILNAAPKRVVYVSCNPATQARDLQLM 449 Query: 336 STTHTIERLALFDQFPYTRHMECGVLLVRK 365 + + + D FP+T H+E VL R+ Sbjct: 450 DADYKVTAVQPVDMFPHTPHVENVVLQERR 479 >gi|88808527|ref|ZP_01124037.1| 23S rRNA methyltransferase/RumA [Synechococcus sp. WH 7805] gi|88787515|gb|EAR18672.1| 23S rRNA methyltransferase/RumA [Synechococcus sp. WH 7805] Length = 466 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 50/172 (29%), Positives = 84/172 (48%), Gaps = 22/172 (12%) Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVN 257 + +W+ A+ ++++ YCG G +L LA V+ +EI + SV A+ N N + Sbjct: 302 ICDWIHASAP--SANVIDAYCGIGTIALPLAASGLNVVGLEINRDSVIQAQENAQRNGLE 359 Query: 258 NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH 317 V + E + + + + VDPPR GL A + M+ A P Sbjct: 360 KVCFLDGDVAEHLEQLLPHHQ---------------ALVVDPPRKGLAPAVLQMILAIPP 404 Query: 318 --ILYISCNPDSLCRDLSILSTT---HTIERLALFDQFPYTRHMECGVLLVR 364 ++Y+SC+P +L RDL L+ + IE++ D FP T H+EC V+++R Sbjct: 405 AFLIYLSCDPATLARDLQQLAGPDGPYRIEQIKPVDFFPQTSHLECLVMMIR 456 >gi|116873184|ref|YP_849965.1| RNA methyltransferase [Listeria welshimeri serovar 6b str. SLCC5334] gi|116742062|emb|CAK21186.1| RNA methyltransferase, TrmA family [Listeria welshimeri serovar 6b str. SLCC5334] Length = 453 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 44/153 (28%), Positives = 73/153 (47%), Gaps = 15/153 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G+ SL LA+ V VEI +++ AR N A N + N ++E Sbjct: 310 VIDAYCGIGSISLCLAKKAKHVYGVEIVDQAIQDARANAALNELTNTTFETGKAEEVIPN 369 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330 + + + VDPPR G D+ + + A ++Y+SCNP +L R Sbjct: 370 WYK------------NGITADVLVVDPPRKGCDEKLLETILAMKPKKVVYVSCNPGTLAR 417 Query: 331 DLSILS-TTHTIERLALFDQFPYTRHMECGVLL 362 D+ IL+ + +++ D FP T H+E +L Sbjct: 418 DMKILTDGGYEAKKVQPVDMFPMTTHIEAVTVL 450 >gi|330504041|ref|YP_004380910.1| 23S rRNA 5-methyluridine methyltransferase [Pseudomonas mendocina NK-01] gi|328918327|gb|AEB59158.1| 23S rRNA 5-methyluridine methyltransferase [Pseudomonas mendocina NK-01] Length = 452 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 69/230 (30%), Positives = 104/230 (45%), Gaps = 27/230 (11%) Query: 143 HARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHM---- 198 H + +Q G+ C + + +R + L YR F Q N +N M Sbjct: 242 HRAQLWLQGEGQPQPDDPCAELGFELQRWQL---QLAYR--PGDFVQVNGLVNEAMVAQA 296 Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN 258 L+W+ A K + +L+L+CG GNF+L LAR V+AVE VEA AAN NN Sbjct: 297 LDWL--AVK-PEERVLDLFCGLGNFALPLARQAAEVVAVE----GVEAMVLRAAANARNN 349 Query: 259 VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ-AYPH 317 + + F +A N L F + +DPPR G + GM + Sbjct: 350 ----GLGNAHFYRADLS----NPLASETWARGGFPAVLLDPPRDGALEVVRGMSELGARR 401 Query: 318 ILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVLLVRKP 366 ++Y+SCNP +L RD + ++ + + R + D F T H+E + L KP Sbjct: 402 LVYVSCNPTTLARDAAELVRQGYRLRRAGILDMFAQTAHVEA-MALFEKP 450 >gi|300721894|ref|YP_003711172.1| 23S rRNA m5U1939 methyltransferase [Xenorhabdus nematophila ATCC 19061] gi|297628389|emb|CBJ88954.1| 23S rRNA m5U1939 methyltransferase [Xenorhabdus nematophila ATCC 19061] Length = 451 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 53/187 (28%), Positives = 84/187 (44%), Gaps = 25/187 (13%) Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 F Q N +N M+ L D +L+L+CG GNF+L +A V+ VE V Sbjct: 271 FIQVNDEVNQQMVAQALMWLDLQPTDRVLDLFCGMGNFTLPMATKVQAVVGVEGVAALVS 330 Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH-----SYRFKTIFVDPP 300 + +YN N + NV F+ + DIH + F + +DP Sbjct: 331 SGQYNARLNELKNVDF-----------------FHENLESDIHQQPWAALGFNKVLLDPA 373 Query: 301 RSGLDDATVGMVQAYP-HILYISCNPDSLCRDLSI-LSTTHTIERLALFDQFPYTRHMEC 358 R+G +V+ P ++Y+SCNP +L RD + L + + + + D FP+T H+E Sbjct: 374 RAGAAGVMSHIVKLAPDKVVYVSCNPTTLARDSKVMLEAGYHLVSVRMLDMFPHTGHLES 433 Query: 359 GVLLVRK 365 L R+ Sbjct: 434 MALFSRE 440 >gi|309776573|ref|ZP_07671553.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Erysipelotrichaceae bacterium 3_1_53] gi|308915674|gb|EFP61434.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Erysipelotrichaceae bacterium 3_1_53] Length = 456 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 46/160 (28%), Positives = 79/160 (49%), Gaps = 16/160 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +L+ YCG G + +++ +V+ VEI + +VE AR N N ++N++ V + + Sbjct: 308 VLDAYCGIGTIGMYVSQFVKQVVGVEINRDAVEDARINAKINRISNIRFVCEDAGRYMTR 367 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCR 330 + E++ R + +DPPRSG + + +V+ P +LYISCNP + R Sbjct: 368 LAAEKK------------RLDVVIMDPPRSGSSEEFIKSLVRMKPRQVLYISCNPQTQVR 415 Query: 331 DLSILSTT--HTIERLALFDQFPYTRHMECGVLLVRKPSG 368 DL +L + D FP+T H+E L+ + G Sbjct: 416 DLQMLERMGYRVDGNMVPVDLFPHTFHVETVALMSKVNPG 455 >gi|229125919|ref|ZP_04254944.1| Uncharacterized RNA methyltransferase [Bacillus cereus BDRD-Cer4] gi|228657577|gb|EEL13390.1| Uncharacterized RNA methyltransferase [Bacillus cereus BDRD-Cer4] Length = 459 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 81/378 (21%), Positives = 163/378 (43%), Gaps = 42/378 (11%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQ------IFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63 Y++QL +K D + Q + +++ + P HYR +++ + + + ++ Sbjct: 96 YKEQLNQKRDIVVQAFEKYMKNSMEEKIRPTLGMENPWHYRNKSQLQVGRKDEKVITGLY 155 Query: 64 DQQTKERMRIDYFM-------PGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTS-QSD 115 Q + + + I + M + ++ ++ ++ +I E + + I T+ Q+ Sbjct: 156 KQNSHQLIDIAHCMIQHKATNEATKVVRRILEKLNVSIYNEKKQKGLVRTIVTRTAVQTG 215 Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175 + VTLI + + ++ + A K +Q + + I + D+ +AG Sbjct: 216 EVQVTLITTKEELPNKEQFIAEVQKQMPAVKSIMQNVNWRKTSVI-----FGDKTFKLAG 270 Query: 176 RTLIYRQIEN--------SFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGNGNFSLV 226 + +I + + +F Q N V + E AA ++++ YCG G L Sbjct: 271 KEVIQETLGDLSFELSARAFFQLNPEQTVVLYNEAKKAAALTGNENIVDAYCGVGTIGLW 330 Query: 227 LARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDID 286 LA V +++ ++ AR N + N K ++++ +E Sbjct: 331 LANDAAEVRGMDVIPEAIADARKNAKRHGFTNTKYEAGKAEQWLPKWVKE---------- 380 Query: 287 IHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCRDLSILSTTHTIERL 344 +R I VDPPR+G DD + +++ P ++Y+SCNP SL RD+ L ++ +E + Sbjct: 381 --GWRPDVIVVDPPRTGCDDKLLETILKVKPKQVVYVSCNPSSLARDVQALMKSYEVEYV 438 Query: 345 ALFDQFPYTRHMECGVLL 362 D FP+T H+E V L Sbjct: 439 QPVDMFPHTAHVENVVRL 456 >gi|319789139|ref|YP_004150772.1| RNA methyltransferase, TrmA family [Thermovibrio ammonificans HB-1] gi|317113641|gb|ADU96131.1| RNA methyltransferase, TrmA family [Thermovibrio ammonificans HB-1] Length = 428 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 48/155 (30%), Positives = 79/155 (50%), Gaps = 19/155 (12%) Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274 +LYCG G ++ +AR+ R VE +V A YN +N ++ V +E +A++ Sbjct: 287 DLYCGVGTLTIPVARYVHRAFGVEANFSAVADALYN---KDINGLRNVNFYCRETEEALK 343 Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP---HILYISCNPDSLCRD 331 RE D+ + VDPPRSGL++ + + P ++Y+SCNP +L RD Sbjct: 344 IIRE----NGPDL-------VVVDPPRSGLNEKIIRTIATLPRLRRVIYVSCNPATLARD 392 Query: 332 LSILSTTHT-IERLALFDQFPYTRHMECGVLLVRK 365 +++ +ER + D FP T H+E + +RK Sbjct: 393 VALFYKYGVHMERAKVLDMFPQTYHVET-ICFLRK 426 >gi|325479240|gb|EGC82336.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA [Anaerococcus prevotii ACS-065-V-Col13] Length = 455 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 50/184 (27%), Positives = 87/184 (47%), Gaps = 21/184 (11%) Query: 186 SFTQPN--AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 SF QPN ++ + LA G Q D+L+LY G G + V+A +EI + + Sbjct: 288 SFFQPNIYTAEKLYQKAFDLAKIDG-QMDILDLYSGTGTITQVMATQAKSATGIEIVREA 346 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 V+ A N N + N+ + + L++I+ ++ + +DPPR+G Sbjct: 347 VDKAWENSKLNDIKNIDFLCG---------------DVLEEIEKVGNKYDVVILDPPRAG 391 Query: 304 LDDATVGMVQA--YPHILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHMECGV 360 + ++ + +YISCNP + ++ S+ + I+ LFDQFP +RH+E Sbjct: 392 ISSNSLEKILKIDTKKFIYISCNPKTQVENIKEFTSSGYKIKDYELFDQFPRSRHLEAIA 451 Query: 361 LLVR 364 LL + Sbjct: 452 LLEK 455 >gi|260556074|ref|ZP_05828293.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Acinetobacter baumannii ATCC 19606] gi|260410129|gb|EEX03428.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Acinetobacter baumannii ATCC 19606] Length = 463 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 57/188 (30%), Positives = 90/188 (47%), Gaps = 26/188 (13%) Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 FTQ NA +N M++ + QG+ +L+L+CG GNFSL LAR V + S E Sbjct: 286 FTQVNATVNEQMVQLACELLQLQQGERVLDLFCGLGNFSLPLARCVGAKGVVVGVEASEE 345 Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDPPRS 302 + NN+ S++ T KD HS+ F + +DPPR+ Sbjct: 346 MVQRATDNAKRNNLVQASFFSQDLT------------KDFSHHSWANQGFDALLIDPPRA 393 Query: 303 GLDDATVGMVQAYPH-----ILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHM 356 G + ++Q P+ I+Y+SCNP +L RD +L + +++ A+ D F +T H+ Sbjct: 394 GAYE----IMQYVPNFGAKRIVYVSCNPATLARDAGVLVQHGYQLKKAAVMDMFTHTEHV 449 Query: 357 ECGVLLVR 364 E L + Sbjct: 450 ESIALFEK 457 >gi|325066757|ref|ZP_08125430.1| 23S rRNA methyluridine methyltransferase [Actinomyces oris K20] Length = 317 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 51/153 (33%), Positives = 79/153 (51%), Gaps = 17/153 (11%) Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVN-NVKIVRMSSKEFTQAM 273 +L+CG G F+L LA RVL VE++ +++ AR AA+ + + +VR + + Sbjct: 178 DLFCGVGGFALALAAPGRRVLGVEVSASAIDGARA--AADLMGLDPALVRFEAGD----- 230 Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRD 331 R+ D + R + V+PPR G+ + ++A +LY SCNP +L D Sbjct: 231 ------ARVLDPAARAQRPDLLVVNPPRRGIGEQLATRIEASGVERVLYSSCNPRTLAAD 284 Query: 332 LSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 L+ L + + R LFD FP+T H E V LVR Sbjct: 285 LAHLPSMRVV-RSRLFDMFPHTEHAEVLVELVR 316 >gi|167631004|ref|YP_001681503.1| 23S rRNA (uracil-5-)-methyltransferase ruma [Heliobacterium modesticaldum Ice1] gi|167593744|gb|ABZ85492.1| 23S rRNA (uracil-5-)-methyltransferase ruma [Heliobacterium modesticaldum Ice1] Length = 490 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 59/188 (31%), Positives = 90/188 (47%), Gaps = 26/188 (13%) Query: 186 SFTQPNAGINVHMLEWVLAATKGIQG-----DLLELYCGNGNFSLVLARHFDRVLAVEIA 240 SFTQ +N E + TK + G +++ YCG G SL LAR RV+ +E Sbjct: 317 SFTQ----VNPRQTEILYQLTKEVCGLTGRETIIDAYCGAGTISLFLARDCARVIGIEEV 372 Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300 +VE A+ N N + NV+ + ++ ++ R D+ I +DPP Sbjct: 373 PMAVEDAQKNAEQNGITNVEFLTGKVEDLLPSL-----LERACVPDV-------IVLDPP 420 Query: 301 RSGLDDATV-GMVQAYP-HILYISCNPDSLCRDLSILSTTHT--IERLALFDQFPYTRHM 356 R G + + Q P I+Y+SC+P SL RD + L T H ++++ D FP T H+ Sbjct: 421 RRGCHARVIEAIAQTGPDRIVYVSCDPASLARDAARL-TAHGWQVKQVTPVDMFPQTGHV 479 Query: 357 ECGVLLVR 364 E VL+ R Sbjct: 480 ETVVLMSR 487 >gi|162447371|ref|YP_001620503.1| TrmA family RNA methyltransferase [Acholeplasma laidlawii PG-8A] gi|161985478|gb|ABX81127.1| RNA methyltransferase, TrmA family [Acholeplasma laidlawii PG-8A] Length = 451 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 46/152 (30%), Positives = 79/152 (51%), Gaps = 16/152 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ Y G S + + + A+EI + +V++A+ ++ NH++NV ++ F A Sbjct: 311 VVDAYAGIAPISHYIGQDAKHIYAIEINEDAVKSAKISLDQNHIDNVTVIE---NNFEDA 367 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCR 330 + + LKDI I F DPPRSGL + + + Y ++Y SCNP +L + Sbjct: 368 L------DNLKDIKIDVMLF-----DPPRSGLGEDVIQTILKYKPKRLVYGSCNPSTLAK 416 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLL 362 DLS+L + ++ + D FPYT +E LL Sbjct: 417 DLSLLLEDYDLKHITPIDMFPYTSLVESITLL 448 >gi|30260591|ref|NP_842968.1| RNA methyltransferase [Bacillus anthracis str. Ames] gi|47525703|ref|YP_017052.1| RNA methyltransferase [Bacillus anthracis str. 'Ames Ancestor'] gi|49183442|ref|YP_026694.1| RNA methyltransferase [Bacillus anthracis str. Sterne] gi|65317856|ref|ZP_00390815.1| COG2265: SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Bacillus anthracis str. A2012] gi|165870726|ref|ZP_02215379.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. A0488] gi|167634708|ref|ZP_02393027.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. A0442] gi|167641292|ref|ZP_02399545.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. A0193] gi|170688986|ref|ZP_02880187.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. A0465] gi|170707136|ref|ZP_02897592.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. A0389] gi|177654527|ref|ZP_02936383.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. A0174] gi|190567598|ref|ZP_03020511.1| RNA methyltransferase, TrmA family [Bacillus anthracis Tsiankovskii-I] gi|227813100|ref|YP_002813109.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. CDC 684] gi|229603797|ref|YP_002865038.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. A0248] gi|254686816|ref|ZP_05150674.1| RNA methyltransferase, TrmA family protein [Bacillus anthracis str. CNEVA-9066] gi|254724890|ref|ZP_05186673.1| RNA methyltransferase, TrmA family protein [Bacillus anthracis str. A1055] gi|254738958|ref|ZP_05196660.1| RNA methyltransferase, TrmA family protein [Bacillus anthracis str. Western North America USA6153] gi|254744546|ref|ZP_05202225.1| RNA methyltransferase, TrmA family protein [Bacillus anthracis str. Kruger B] gi|254756196|ref|ZP_05208225.1| RNA methyltransferase, TrmA family protein [Bacillus anthracis str. Vollum] gi|254762015|ref|ZP_05213864.1| RNA methyltransferase, TrmA family protein [Bacillus anthracis str. Australia 94] gi|50401539|sp|Q81Z48|Y426_BACAN RecName: Full=Uncharacterized RNA methyltransferase BA_0426/GBAA_0426/BAS0414 gi|30253959|gb|AAP24454.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. Ames] gi|47500851|gb|AAT29527.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. 'Ames Ancestor'] gi|49177369|gb|AAT52745.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. Sterne] gi|164713560|gb|EDR19084.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. A0488] gi|167510800|gb|EDR86193.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. A0193] gi|167529782|gb|EDR92530.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. A0442] gi|170127914|gb|EDS96785.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. A0389] gi|170667087|gb|EDT17849.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. A0465] gi|172080639|gb|EDT65722.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. A0174] gi|190561385|gb|EDV15357.1| RNA methyltransferase, TrmA family [Bacillus anthracis Tsiankovskii-I] gi|227004638|gb|ACP14381.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. CDC 684] gi|229268205|gb|ACQ49842.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. A0248] Length = 459 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 45/155 (29%), Positives = 75/155 (48%), Gaps = 14/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G L LA V +++ ++ AR N + N K ++++ Sbjct: 317 IVDAYCGVGTIGLWLANDAAEVRGMDVIPEAIADARKNAKRHGFTNTKYEAGKAEQWLPK 376 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCR 330 +E +R I VDPPR+G DD + +++ P ++Y+SCNP SL R Sbjct: 377 WVKE------------GWRPDVIVVDPPRTGCDDKLLETILKVKPKQVVYVSCNPSSLAR 424 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 D+ L ++ +E + D FP+T H+E V L K Sbjct: 425 DVQALMKSYEVEYVQPVDMFPHTAHVENVVKLTLK 459 >gi|295702575|ref|YP_003595650.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus megaterium DSM 319] gi|294800234|gb|ADF37300.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus megaterium DSM 319] Length = 461 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 54/212 (25%), Positives = 101/212 (47%), Gaps = 25/212 (11%) Query: 166 YVDERLTVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGD--LLE 215 + DE T++G+++I + + +F Q N V + + V A + G+ +++ Sbjct: 262 FGDETFTLSGKSVIQETLGDISFELSARAFFQLNPLQTVKLYDEVKKAA-ALTGNEKIVD 320 Query: 216 LYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275 YCG G L LA+ + ++ + S+ AR N + + V +++++ + Sbjct: 321 AYCGVGTIGLWLAKDAKEIRGMDTIEESIVDARKNAQDHGFEHATYVTGAAEKWMPQWVK 380 Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYPH-ILYISCNPDSLCRDLS 333 E ++ I VDPPR+G DD + + Q P ++Y+SCNP +L +D+ Sbjct: 381 E------------GWKPDVIVVDPPRTGCDDKLLKTILQVKPKKVVYVSCNPSTLAKDVQ 428 Query: 334 ILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 LS + ++ + D FP+T H+E V L K Sbjct: 429 QLSKAYHVDYIQPVDMFPHTAHVENVVSLTLK 460 >gi|256833599|ref|YP_003162326.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Jonesia denitrificans DSM 20603] gi|256687130|gb|ACV10023.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Jonesia denitrificans DSM 20603] Length = 382 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 56/190 (29%), Positives = 88/190 (46%), Gaps = 30/190 (15%) Query: 186 SFTQPNAGINVHML----EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241 SF Q N + H+ +W+ A + +L+CG G F+L A H +RV VEI+ Sbjct: 208 SFFQTNTPVAAHLYRQAEQWIADARPQ---HVWDLFCGVGGFALHAAPHANRVTGVEISA 264 Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT-----IF 296 ++E+AR + A + NV + + F+ HS R + Sbjct: 265 EAIESARTSAAERALTNVTFDALDATTFSTG---------------HSARLADGGPDLVV 309 Query: 297 VDPPRSGLD-DATVGMVQAYPH-ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTR 354 V+PPR G+ D + + H ++Y SCN SL +DL+ + R LFD FP+T Sbjct: 310 VNPPRRGIGVDLAEWLNASDAHTVVYSSCNARSLAKDLTAMPQFQPT-RARLFDMFPHTN 368 Query: 355 HMECGVLLVR 364 H+E VL+ + Sbjct: 369 HVETVVLMSK 378 >gi|317502954|ref|ZP_07961044.1| TrmA family RNA methyltransferase [Prevotella salivae DSM 15606] gi|315665920|gb|EFV05497.1| TrmA family RNA methyltransferase [Prevotella salivae DSM 15606] Length = 479 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 58/209 (27%), Positives = 93/209 (44%), Gaps = 24/209 (11%) Query: 169 ERLTVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCG 219 E T G IY +E+ SF Q N H+ + + G+L+ +LY G Sbjct: 283 ELTTFKGTDFIYETMEDLKFKVGPKSFYQTNTDQAYHLYCVARSFAQLTGGELVYDLYTG 342 Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279 G + +A +V+ +E ++E A+ N N +NN K+ Sbjct: 343 TGTIANFVAHQAKQVIGIEYVPEAIEDAKENSHVNGINNTLFYAGDMKDI---------- 392 Query: 280 NRLKDIDIHSY-RFKTIFVDPPRSGLDDATVGMV-QAYPH-ILYISCNPDSLCRDLSILS 336 L D I + + I DPPR+G+ V ++ A P I+Y+SCNP + RDL ++ Sbjct: 393 --LTDDFIQGHGQPDVIITDPPRAGMHADVVKVILNASPKRIVYVSCNPATQARDLQLMD 450 Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVRK 365 + + + D FP+T H+E VLL R+ Sbjct: 451 ADYKVAAVQPVDMFPHTPHVENVVLLERR 479 >gi|315652265|ref|ZP_07905257.1| 23S rRNA (uracil-5-)-methyltransferase [Eubacterium saburreum DSM 3986] gi|315485388|gb|EFU75778.1| 23S rRNA (uracil-5-)-methyltransferase [Eubacterium saburreum DSM 3986] Length = 475 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 63/213 (29%), Positives = 96/213 (45%), Gaps = 27/213 (12%) Query: 158 TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNA-GINV--HMLEWVLAATKGIQGDLL 214 T + DY+ ERL L ++ SF Q N+ G V + L T+G + Sbjct: 283 TTLLYGNDYITERL----NRLDFKITPFSFFQTNSKGAEVLYTVAGKYLGDTEGKS--VF 336 Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274 +LY G G + +LA ++V VEI + +VEAA N N +NN + + Sbjct: 337 DLYSGTGTIAQLLAPKSEKVYGVEIVEEAVEAAIENAKKNGLNNCEFIAG---------- 386 Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDL 332 + LK +D + I +DPPR G+ + + + I+YISC P S RDL Sbjct: 387 -----DVLKVVDTLGFNPDIIVLDPPRDGIHPKALPKILDFGADKIVYISCKPTSFVRDL 441 Query: 333 SIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364 I+ + + +E+ D FP T + E LL R Sbjct: 442 KIMEAAGYKMEKCVGVDMFPNTVNCEAVALLSR 474 >gi|312623225|ref|YP_004024838.1| RNA methyltransferase, TrmA family [Caldicellulosiruptor kronotskyensis 2002] gi|312203692|gb|ADQ47019.1| RNA methyltransferase, TrmA family [Caldicellulosiruptor kronotskyensis 2002] Length = 451 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 56/209 (26%), Positives = 104/209 (49%), Gaps = 24/209 (11%) Query: 168 DERLTVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYC 218 +E + + G + I +I N SF Q N+ + V+ + I+ +++ ++Y Sbjct: 252 EEDILIWGNSTIKDKIGNLTFEISPKSFFQVNSVQTEVLYRQVVKYLRNIEAEVVFDIYS 311 Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278 G G S+ +AR +V A+E+ + +VE A+ + N ++N++ + S+ E E Sbjct: 312 GIGTISMFVARFCKKVYAIELVRDAVEDAKKSSKNNSISNIEFICGSA---------EIE 362 Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSIL- 335 +L I + + +DPPRSG + + + + +I+Y+SCNP +L RD +IL Sbjct: 363 IPKLLKSGIIP---QAVILDPPRSGCEKQLLESLIEHKIQNIIYVSCNPSTLARDANILC 419 Query: 336 STTHTIERLALFDQFPYTRHMECGVLLVR 364 S + + + D FP T H+EC L + Sbjct: 420 SNGYEVVEVQPVDMFPQTFHVECVTLFKK 448 >gi|210621791|ref|ZP_03292820.1| hypothetical protein CLOHIR_00765 [Clostridium hiranonis DSM 13275] gi|210154555|gb|EEA85561.1| hypothetical protein CLOHIR_00765 [Clostridium hiranonis DSM 13275] Length = 456 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 45/156 (28%), Positives = 76/156 (48%), Gaps = 15/156 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + ++YCG G SL LA+ +V +EI + +++ A+ N N + N + ++E Sbjct: 313 VFDIYCGIGTISLFLAQKAKKVYGIEIVEDAIKDAKRNAELNGLENTEFYAGKAEEVVPK 372 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330 M +E + + VDPPR G D+ + +V P ++Y+SCNP +L R Sbjct: 373 MYKE------------GKKADVVVVDPPRKGCDEKVLDTIVSMDPERVVYVSCNPSTLAR 420 Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVRK 365 DL+ + + D FP++ H+E LL RK Sbjct: 421 DLAYMDERGFKCVEIQPVDMFPHSVHVENVALLERK 456 >gi|328676686|gb|AEB27556.1| 23S rRNA (uracil-5-) -methyltransferase RumA [Francisella cf. novicida Fx1] Length = 449 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 49/177 (27%), Positives = 89/177 (50%), Gaps = 15/177 (8%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 N FTQ N IN M++ + + D +++L+CG GNF+L +++H V+ VE Sbjct: 276 NDFTQVNNDINKKMIQRAIELLDISENDSIIDLFCGLGNFTLPISQHAKTVIGVEGEPTM 335 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 V+ A+ A N++ NV + ++ + FN ++ + + +DPPR+G Sbjct: 336 VKRAKETAADNNIVNVNFY---AANLFESFEDKEWFN--------NFEYNKMLLDPPRAG 384 Query: 304 LDDATVGMVQ-AYPHILYISCNPDSLCRDLSILSTTHTIERLA--LFDQFPYTRHME 357 + + + I+Y+SC+ +L RD IL T + ++ + D FP+T H+E Sbjct: 385 AQEVCNNIEKFNVKRIVYVSCDTATLARDAGILVNTKGYKLISAGVMDMFPHTMHVE 441 >gi|190575407|ref|YP_001973252.1| 23S rRNA 5-methyluridine methyltransferase [Stenotrophomonas maltophilia K279a] gi|226725396|sp|B2FPX2|RUMA_STRMK RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|190013329|emb|CAQ46963.1| conserved hypothetical protein [Stenotrophomonas maltophilia K279a] Length = 444 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 58/184 (31%), Positives = 86/184 (46%), Gaps = 18/184 (9%) Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATK-GIQGDLLELYCGNGNFSLVLARHFDRVLA 236 L +R ++ F Q NA +N M+ L + G +L+L+CG GNF+L LAR V+ Sbjct: 267 LAFRPLD--FIQVNAKLNEKMIAHALDLLEPGEDERVLDLFCGLGNFTLPLARRVREVVG 324 Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296 VE V AR N N + N + S + TQ R + F + Sbjct: 325 VEGDAGLVARARENAVRNGLANAQFF---SADLTQDQRSTPWMRQ---------GFDKLL 372 Query: 297 VDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDLSILSTTH--TIERLALFDQFPYT 353 +DPPRSG + + ++ + I+Y+SC+P SL RD L T+ D FP+T Sbjct: 373 LDPPRSGAIEVLQQLPLKQFKRIVYVSCHPGSLARDAGYLVNEQGFTLVSAGAMDMFPHT 432 Query: 354 RHME 357 H+E Sbjct: 433 AHVE 436 >gi|225159258|ref|ZP_03725559.1| RNA methyltransferase, TrmA family [Opitutaceae bacterium TAV2] gi|224802155|gb|EEG20426.1| RNA methyltransferase, TrmA family [Opitutaceae bacterium TAV2] Length = 451 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 47/153 (30%), Positives = 76/153 (49%), Gaps = 16/153 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L++ YCG+G F+L A F++V +EI++ S+ AR N N + N QA Sbjct: 288 LVDAYCGSGLFALSAASAFEKVAGIEISESSIVFARKNAELNGICNATF---------QA 338 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCR 330 F L + + +DPPR G D++ + + Y ++Y+SC+P + R Sbjct: 339 GDASAIFAGLTFPAADT----AVIIDPPRKGCDESFLQQLFGYGPRTVVYVSCDPATQMR 394 Query: 331 DLS-ILSTTHTIERLALFDQFPYTRHMECGVLL 362 DL L+ + + + FD FP TRH+EC + L Sbjct: 395 DLRHFLAAGYELSAVQPFDLFPQTRHLECVITL 427 >gi|153811014|ref|ZP_01963682.1| hypothetical protein RUMOBE_01405 [Ruminococcus obeum ATCC 29174] gi|149832902|gb|EDM87985.1| hypothetical protein RUMOBE_01405 [Ruminococcus obeum ATCC 29174] Length = 456 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 50/154 (32%), Positives = 77/154 (50%), Gaps = 14/154 (9%) Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274 +LYCG G SL LA+ V VEI ++E AR N N + NV+ ++E A Sbjct: 311 DLYCGIGTISLFLAQKAKFVRGVEIVPAAIEDARRNAKLNDIGNVEFFVGKAEEVLPA-- 368 Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYPH-ILYISCNPDSLCRDL 332 E+ + + I VDPPR G D+ + + + P ++Y+SC+ +L RDL Sbjct: 369 ---EYEK------NGVYADVIVVDPPRKGCDEMLLKTILKMQPKRVVYVSCDSATLARDL 419 Query: 333 SILS-TTHTIERLALFDQFPYTRHMECGVLLVRK 365 L + ++++ DQFP T H+E LL +K Sbjct: 420 RFLCDNGYELKKVCGVDQFPQTVHVETVCLLSKK 453 >gi|269468672|gb|EEZ80308.1| RNA methyltransferase [uncultured SUP05 cluster bacterium] Length = 438 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 53/185 (28%), Positives = 90/185 (48%), Gaps = 22/185 (11%) Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 FTQ N +N M+ L + + D +++L+CG GNF+L +ARH V+ VE +E Sbjct: 269 FTQVNFKLNQKMINLALELLELNESDEVIDLFCGLGNFTLPIARHVKHVVGVEGDLGLIE 328 Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD 305 A+YN N++ NV + + E+ R K+ + +DP RSG Sbjct: 329 RAKYNADQNNITNVDFYKADLFQEVDGF----EWFRGKN-------YNKALLDPARSG-- 375 Query: 306 DATVGMVQAYPH-----ILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECG 359 + +V+ P ++Y+SCNP +L RD + ++ + ++ + D FP T H+E Sbjct: 376 --ALEIVEFLPKLGIERLVYVSCNPATLARDTARLIELGYKLQTAGVMDMFPQTAHVESI 433 Query: 360 VLLVR 364 L + Sbjct: 434 ALFTK 438 >gi|254523364|ref|ZP_05135419.1| 23S rRNA (uracil-5-)-methyltransferase [Stenotrophomonas sp. SKA14] gi|219720955|gb|EED39480.1| 23S rRNA (uracil-5-)-methyltransferase [Stenotrophomonas sp. SKA14] Length = 444 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 58/184 (31%), Positives = 86/184 (46%), Gaps = 18/184 (9%) Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATK-GIQGDLLELYCGNGNFSLVLARHFDRVLA 236 L +R ++ F Q NA +N M+ L + G +L+L+CG GNF+L LAR V+ Sbjct: 267 LAFRPLD--FIQVNAKLNEKMIAHALDLLEPGEDERVLDLFCGLGNFTLPLARRVREVVG 324 Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296 VE V AR N N + N + S + TQ R + F + Sbjct: 325 VEGDAGLVARARENAERNGLANAQFF---SADLTQDQRSTAWMRQ---------GFDKLL 372 Query: 297 VDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDLSILSTTH--TIERLALFDQFPYT 353 +DPPRSG + + ++ + I+Y+SC+P SL RD L T+ D FP+T Sbjct: 373 LDPPRSGAIEVLQQLPLKQFKRIVYVSCHPGSLARDAGYLVNEQGFTLVSAGAMDMFPHT 432 Query: 354 RHME 357 H+E Sbjct: 433 AHVE 436 >gi|309811112|ref|ZP_07704909.1| putative 23S rRNA (uracil-5-)-methyltransferase RumB [Dermacoccus sp. Ellin185] gi|308434900|gb|EFP58735.1| putative 23S rRNA (uracil-5-)-methyltransferase RumB [Dermacoccus sp. Ellin185] Length = 377 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 56/195 (28%), Positives = 89/195 (45%), Gaps = 18/195 (9%) Query: 175 GRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHFDR 233 G +Y Q SF Q N + + A + +L+LYCG G F+L LA R Sbjct: 199 GDVTLYLQ-HRSFFQTNTDVAAALYRQARAWADDVDARQVLDLYCGVGGFALHLADGTRR 257 Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293 V VEI ++++AR + A + V + + + E + L Sbjct: 258 VHGVEIEPSAIDSARRS--ATEAGSDATVTFDVGDASTLVMPEHDVPDL----------- 304 Query: 294 TIFVDPPRSGLDDATVGMVQA-YPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPY 352 + V+PPR G++ + ++ H++Y SCNP SL DL+ + + + LFD FP+ Sbjct: 305 -VVVNPPRRGIEALADALERSCVAHVIYSSCNPTSLAADLAAMP-SFDVRAARLFDMFPH 362 Query: 353 TRHMECGVLLVRKPS 367 T H E LL R+P+ Sbjct: 363 TNHAEVAALLSRRPA 377 >gi|300727266|ref|ZP_07060682.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella bryantii B14] gi|299775504|gb|EFI72098.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella bryantii B14] Length = 484 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 59/204 (28%), Positives = 94/204 (46%), Gaps = 26/204 (12%) Query: 175 GRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGDLL--ELYCGNGNFS 224 G+ IY +E+ SF Q N H+ E V + G+ L +LY G G + Sbjct: 294 GKDYIYETMEDLKFKVGPKSFYQTNTDQAYHLYE-VARNFAELNGEELVYDLYTGTGTIA 352 Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284 +A H +V+ +E ++E A+ N N ++N K+ L D Sbjct: 353 NFVAHHSKKVIGIEYVPEAIEDAKVNSEINGIDNTLFYAGDMKDI------------LTD 400 Query: 285 IDIHSY-RFKTIFVDPPRSGL-DDATVGMVQAYPH-ILYISCNPDSLCRDLSILSTTHTI 341 I + R I DPPR+G+ D ++ A P I+Y+SCNP + RDL++L + + Sbjct: 401 DFIKQHGRPDVIITDPPRAGMHPDVIQVILNAAPKRIVYVSCNPATQARDLALLDCDYKV 460 Query: 342 ERLALFDQFPYTRHMECGVLLVRK 365 ++ D FP+T H+E V L R+ Sbjct: 461 MQVQPVDMFPHTPHVENVVQLYRR 484 >gi|218132418|ref|ZP_03461222.1| hypothetical protein BACPEC_00277 [Bacteroides pectinophilus ATCC 43243] gi|217992756|gb|EEC58758.1| hypothetical protein BACPEC_00277 [Bacteroides pectinophilus ATCC 43243] Length = 547 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 64/216 (29%), Positives = 99/216 (45%), Gaps = 25/216 (11%) Query: 154 RANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD- 212 + +T+I +D+ E L L +R SF Q N+ + +L G D Sbjct: 258 KNERTEIVFGQDFFYEELL----GLTFRITPFSFFQTNS-LGAEVLYSTAREYIGTTKDK 312 Query: 213 -LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271 + +LY G G + ++A +V+ VEI + +V AAR N A N + EF Sbjct: 313 TVFDLYSGTGTIAQLMAPVAKKVIGVEIVEEAVVAARENAAHNGLTQC--------EFIA 364 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLC 329 + LK ID + I +DPPR G+ + + +Y HI+YISC SL Sbjct: 365 G-------DVLKVIDDIKDKPDIIILDPPRDGIHPKALPKILSYGVDHIVYISCKASSLA 417 Query: 330 RDL-SILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 RDL +I +++E+ D FP T ++E VLL + Sbjct: 418 RDLVTIQDMGYSVEKACCVDMFPMTGNVETVVLLSK 453 >gi|153001658|ref|YP_001367339.1| 23S rRNA 5-methyluridine methyltransferase [Shewanella baltica OS185] gi|226725387|sp|A6WR37|RUMA_SHEB8 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|151366276|gb|ABS09276.1| RNA methyltransferase, TrmA family [Shewanella baltica OS185] Length = 450 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 54/186 (29%), Positives = 88/186 (47%), Gaps = 26/186 (13%) Query: 185 NSFTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240 +F Q N IN M L+W+ A +L+L+CG GNFSL LA+ V+ VE Sbjct: 279 GNFVQVNGQINKAMVAQALDWLAPAP---DERILDLFCGMGNFSLPLAKMGADVIGVEGV 335 Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY--RFKTIFVD 298 V AR N AN+++ + + D+ + + + + +D Sbjct: 336 AEMVTQARVNAKANNLDKLTFYHG---------------DLSADLSLEPWMGKIDKLLLD 380 Query: 299 PPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDLSI-LSTTHTIERLALFDQFPYTRHM 356 P R+G ++ + + P ++Y+SCNP SL RD ++ L + +++L L D FP T H+ Sbjct: 381 PARAGAFESLQWLKKMKPRKVVYVSCNPASLARDSAVLLERGYRLQQLGLIDMFPQTHHI 440 Query: 357 ECGVLL 362 E L Sbjct: 441 EAMALF 446 >gi|194366743|ref|YP_002029353.1| 23S rRNA 5-methyluridine methyltransferase [Stenotrophomonas maltophilia R551-3] gi|226725395|sp|B4SRK6|RUMA_STRM5 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|194349547|gb|ACF52670.1| RNA methyltransferase, TrmA family [Stenotrophomonas maltophilia R551-3] Length = 444 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 58/184 (31%), Positives = 86/184 (46%), Gaps = 18/184 (9%) Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATK-GIQGDLLELYCGNGNFSLVLARHFDRVLA 236 L +R ++ F Q NA +N M+ L + G +L+L+CG GNF+L LAR V+ Sbjct: 267 LAFRPLD--FIQVNAKLNEKMIAHALDLLEPGEDERVLDLFCGLGNFTLPLARRVREVVG 324 Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296 VE V AR N N + N + S + TQ R + F + Sbjct: 325 VEGDAGLVARARENAERNGLANAQFF---SADLTQDQRSTAWMRQ---------GFDKLL 372 Query: 297 VDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDLSILSTTH--TIERLALFDQFPYT 353 +DPPRSG + + ++ + I+Y+SC+P SL RD L T+ D FP+T Sbjct: 373 LDPPRSGAIEVLQQLPLKQFKRIVYVSCHPGSLARDAGYLVNEQGFTLVSAGAMDMFPHT 432 Query: 354 RHME 357 H+E Sbjct: 433 AHVE 436 >gi|110834485|ref|YP_693344.1| RNA methyltransferase [Alcanivorax borkumensis SK2] gi|123050449|sp|Q0VP26|RUMA_ALCBS RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|110647596|emb|CAL17072.1| RNA methyltransferase, TrmA family [Alcanivorax borkumensis SK2] Length = 445 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 53/182 (29%), Positives = 91/182 (50%), Gaps = 31/182 (17%) Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 FTQ NA IN M+ L I D +L+L+CG GNF++ A+ +V+ VE+++ V Sbjct: 273 FTQVNAEINRKMVPLALDLLD-ISPDHTVLDLFCGLGNFTIPAAKRAGKVVGVEVSQAMV 331 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT---IFVDPPR 301 E N N + N++ ++ +D+ ++ +T I +DPPR Sbjct: 332 ERGYENARRNSLENLEF---------------HAWDLSQDVSGQAWARQTYDRILIDPPR 376 Query: 302 SGLDDATVGMVQAYP-----HILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRH 355 +G + MV+ P I+Y+SCNP +L RD +++ + ++ + D FP+T H Sbjct: 377 TG----ALEMVKLMPRLGASKIVYVSCNPATLARDAGELMALGYRLKAAGVMDMFPHTTH 432 Query: 356 ME 357 +E Sbjct: 433 VE 434 >gi|257126314|ref|YP_003164428.1| RNA methyltransferase, TrmA family [Leptotrichia buccalis C-1013-b] gi|257050253|gb|ACV39437.1| RNA methyltransferase, TrmA family [Leptotrichia buccalis C-1013-b] Length = 474 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 43/156 (27%), Positives = 81/156 (51%), Gaps = 18/156 (11%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS-SKEFTQ 271 +++ + G G +++L+++ +V+ +E + S AA+ N + NV+ V KE + Sbjct: 328 VIDAFSGTGTIAMMLSKNIKKVIGIESIESSTLAAKLTSYENSIQNVEFVNGKVEKELPK 387 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLC 329 ++RE D+ + F DPPR G++++ + V I+YISCNP + Sbjct: 388 ILKRE---------DVGAIVF-----DPPRRGIEESALKSVVKNKIEKIVYISCNPATFA 433 Query: 330 RDLSILSTT-HTIERLALFDQFPYTRHMECGVLLVR 364 RD+ IL+ + + ++A D FP T H+E ++ R Sbjct: 434 RDVKILAENGYVLRKVAPVDMFPQTGHIEVVGMIQR 469 >gi|254372579|ref|ZP_04988068.1| RNA methyltransferase [Francisella tularensis subsp. novicida GA99-3549] gi|151570306|gb|EDN35960.1| RNA methyltransferase [Francisella novicida GA99-3549] Length = 449 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 49/177 (27%), Positives = 89/177 (50%), Gaps = 15/177 (8%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 N FTQ N IN M++ + + D +++L+CG GNF+L +++H V+ VE Sbjct: 276 NDFTQVNNDINKKMIKRAIELLDISENDSIIDLFCGLGNFTLPISQHAKTVIGVEGEPTM 335 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 V+ A+ A N++ NV + ++ + FN ++ + + +DPPR+G Sbjct: 336 VKRAKETAADNNIVNVNFY---AANLFESFEDKEWFN--------NFEYNKMLLDPPRAG 384 Query: 304 LDDATVGMVQ-AYPHILYISCNPDSLCRDLSILSTTHTIERLA--LFDQFPYTRHME 357 + + + I+Y+SC+ +L RD IL T + ++ + D FP+T H+E Sbjct: 385 AQEVCNNIEKFNVKRIVYVSCDTATLARDAGILVNTKGYKLISAGVMDMFPHTMHVE 441 >gi|218895544|ref|YP_002443955.1| RNA methyltransferase, TrmA family [Bacillus cereus G9842] gi|218542488|gb|ACK94882.1| RNA methyltransferase, TrmA family [Bacillus cereus G9842] Length = 459 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 79/379 (20%), Positives = 163/379 (43%), Gaps = 44/379 (11%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQ------IFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63 Y++QL +K D + Q + +++ + P HYR +++ + + + ++ Sbjct: 96 YKEQLNQKRDIVVQAFEKYMKNSMEEKIRPTLGMENPWHYRNKSQLQVGRKDEKVITGLY 155 Query: 64 DQQTKERMRIDYFM-------PGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTS-QSD 115 Q + + + I + M + ++ ++ ++ +I E + + I T+ Q+ Sbjct: 156 KQNSHQLIDIAHCMIQHKATNEATKVVRRILEKLNVSIYNEKKQKGLVRTIVTRTAVQTG 215 Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175 + VTLI + + ++ + A K +Q + + I + D+ +AG Sbjct: 216 EVQVTLITTKEELPNKEQFVAEVQKQMPAVKSIMQNVNWRKTSVI-----FGDKTFKLAG 270 Query: 176 RTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSL 225 + +I + + +F Q N + + + A + GD +++ YCG G L Sbjct: 271 KEVIQETLGDLSFELSARAFFQLNPEQTIVLYDEAKKAA-ALTGDEKIVDAYCGVGTIGL 329 Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285 LA V +++ ++ AR N + N K ++++ +E Sbjct: 330 WLANDAAEVRGMDVIPEAIADARKNAKRHGFTNTKYEAGKAEQWLPKWVKE--------- 380 Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMV-QAYP-HILYISCNPDSLCRDLSILSTTHTIER 343 +R I VDPPR+G DD + + + P ++Y+SCNP SL RD+ L ++ ++ Sbjct: 381 ---GWRPDVIVVDPPRTGCDDKLLETILKVKPKQVVYVSCNPSSLARDVQALMKSYEVDY 437 Query: 344 LALFDQFPYTRHMECGVLL 362 + D FP+T H+E V L Sbjct: 438 VQPVDMFPHTAHVENVVRL 456 >gi|318606312|emb|CBY27810.1| 23s rRNA (Uracil-5-)-methyltransferase rumB [Yersinia enterocolitica subsp. palearctica Y11] Length = 375 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 49/156 (31%), Positives = 79/156 (50%), Gaps = 18/156 (11%) Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271 + +L+CG G F L A R+ +EI+ ++ AR + + NV + S +F Sbjct: 236 SMWDLFCGVGVFGLHCADTETRLTGIEISAEAIACARQSADQLGLKNVTFAALDSTQFAT 295 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLC 329 A E + +L + V+PPR G+ + Q P ILY SCN +++ Sbjct: 296 A---ETQVPQL------------VLVNPPRRGIGAQLCEYLSQMAPQFILYSSCNAETMA 340 Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 +D+S+L T + IER+ LFD FP+T H E LL+++ Sbjct: 341 KDISLL-TDYRIERVQLFDMFPHTAHYEVLTLLIKR 375 >gi|301335320|ref|ZP_07223564.1| rRNA methyltransferase [Chlamydia trachomatis L2tet1] gi|301336306|ref|ZP_07224508.1| rRNA methyltransferase [Chlamydia muridarum MopnTet14] Length = 396 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 54/204 (26%), Positives = 102/204 (50%), Gaps = 24/204 (11%) Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNA----GINVHMLEWVLAATKGIQGDLLELYCGNG 221 ++ ++L++ GR+ ++ SF QP + I + + +++ K LL+LYCG G Sbjct: 206 FLKQQLSLEGRSNLFHIRPRSFFQPQSRQAEKIILTIKDFISPTGKE---TLLDLYCGAG 262 Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281 ++L+ + +V+ VE+ ++ +A NI N N+++ +K F + E Sbjct: 263 TIGILLSPYVKKVIGVELVPDAIASAHENIQLNSA-NMEVFLEDAKRFC----KRNEQAP 317 Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSIL-STT 338 D+ + VDPPR G+ + + + A I+Y+SCNP + + + L Sbjct: 318 APDV---------VIVDPPRCGMQNKALKYLLRIAPKKIVYVSCNPLTQIHECTTLVEQG 368 Query: 339 HTIERLALFDQFPYTRHMECGVLL 362 + ++R+ DQFP+T H+E VLL Sbjct: 369 YKLQRMQPIDQFPHTHHLENVVLL 392 >gi|238879370|gb|EEQ43008.1| endo-exonuclease NUCR [Candida albicans WO-1] Length = 551 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 46/161 (28%), Positives = 78/161 (48%), Gaps = 21/161 (13%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L++ YCG+G FS+ + + +V+ VEI+ S+ A+ N N++ N + ++E Sbjct: 401 LVDAYCGSGLFSITCSSNVSKVIGVEISADSIRFAKRNAEKNNIKNANFIVGKAEEI--- 457 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330 ID + + ++ +DPPR G DD + + Y I+YISCN S R Sbjct: 458 ---------FASIDTPNNQ-TSVILDPPRKGCDDVFLNQLSDYNPAKIVYISCNVHSQAR 507 Query: 331 DL------SILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 D+ ++ + +E + FD FP T H+E +L K Sbjct: 508 DIEWFINSTVNGNQYYVESIKGFDFFPQTHHVETVAVLSLK 548 >gi|282849051|ref|ZP_06258440.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Veillonella parvula ATCC 17745] gi|282581326|gb|EFB86720.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Veillonella parvula ATCC 17745] Length = 505 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 75/288 (26%), Positives = 119/288 (41%), Gaps = 41/288 (14%) Query: 102 AKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDAL-HARKYQIQLIGR------ 154 AK F I+ + + I+ + R+ W + D L H K+ L R Sbjct: 229 AKEFDIEPYNEHTGKGILRHVIGRIGQSGWMVILVTATDNLPHQEKWVKNLTERVPQVET 288 Query: 155 ------ANKTKICLDRD----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL- 203 +T + L Y D +T + L + +SF Q N + + L Sbjct: 289 IVHNVNGKRTNVILGPKNRILYGDGTITDHIKDLRFTLSPHSFFQVNPEQTTVLYDQALK 348 Query: 204 -AATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK-I 261 A KG + +++ YCG G SL LA V+ +EI +P++ AR N N +N + I Sbjct: 349 YANLKG-EETVIDAYCGTGTISLFLAHKAKHVIGIEIVEPAINNARENARRNGYDNTEFI 407 Query: 262 VRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD----ATVGMVQAYPH 317 V ++ E + + R I DP R+G + + GM Sbjct: 408 VADAAVEMPKLYKA-------------GVRPDVIVFDPIRAGCKEEVLTSAAGMEPK--R 452 Query: 318 ILYISCNPDSLCRDLSILS-TTHTIERLALFDQFPYTRHMECGVLLVR 364 I+Y+SCNP ++ RD+ IL+ + +E + D FP T H+E LL R Sbjct: 453 IVYVSCNPATMARDIEILTHYGYELEEVQPVDMFPMTAHVEAVALLTR 500 >gi|307719372|ref|YP_003874904.1| hypothetical protein STHERM_c16950 [Spirochaeta thermophila DSM 6192] gi|306533097|gb|ADN02631.1| hypothetical protein STHERM_c16950 [Spirochaeta thermophila DSM 6192] Length = 371 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 61/197 (30%), Positives = 89/197 (45%), Gaps = 25/197 (12%) Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLA 228 R+ V G R + F Q N + +LEWV + G G+ +LY G G FS VLA Sbjct: 193 RVEVGGYVFFGRT--DLFFQSNLFVLERLLEWVEGVVSAGDGGEAWDLYAGVGVFSQVLA 250 Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288 R R VE A ++ A + V +S++ F + R + + Sbjct: 251 RRGWRPRLVESAVAALGYAERGLG----GGAAYVGVSAERFLRGYR-----GGVPGV--- 298 Query: 289 SYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLS-ILSTTHTIERLA 345 + DPPRSG G +A P ++YISCN + RD++ ++ + + RLA Sbjct: 299 ------VVADPPRSGFSRTVRGFFEAQRVPLLVYISCNAATFARDVAHLMRAGYRLARLA 352 Query: 346 LFDQFPYTRHME-CGVL 361 FD +P T HME GVL Sbjct: 353 FFDFYPQTPHMEVAGVL 369 >gi|68475067|ref|XP_718419.1| potential tRNA (Uracil-5-)-methyltransferase [Candida albicans SC5314] gi|68475604|ref|XP_718150.1| potential tRNA (Uracil-5-)-methyltransferase [Candida albicans SC5314] gi|46439906|gb|EAK99218.1| potential tRNA (Uracil-5-)-methyltransferase [Candida albicans SC5314] gi|46440184|gb|EAK99493.1| potential tRNA (Uracil-5-)-methyltransferase [Candida albicans SC5314] Length = 551 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 46/161 (28%), Positives = 78/161 (48%), Gaps = 21/161 (13%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L++ YCG+G FS+ + + +V+ VEI+ S+ A+ N N++ N + ++E Sbjct: 401 LVDAYCGSGLFSITCSSNVSKVIGVEISADSIRFAKRNAEKNNIKNANFIVGKAEEI--- 457 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330 ID + + ++ +DPPR G DD + + Y I+YISCN S R Sbjct: 458 ---------FASIDTPNNQ-TSVILDPPRKGCDDVFLNQLSDYNPAKIVYISCNVHSQAR 507 Query: 331 DL------SILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 D+ ++ + +E + FD FP T H+E +L K Sbjct: 508 DIEWFINSTVNGNQYYVESIKGFDFFPQTHHVETVAVLSLK 548 >gi|125625220|ref|YP_001033703.1| putative RNA methyltransferase [Lactococcus lactis subsp. cremoris MG1363] gi|124494028|emb|CAL99028.1| putative RNA methyltransferase [Lactococcus lactis subsp. cremoris MG1363] gi|300072030|gb|ADJ61430.1| putative RNA methyltransferase [Lactococcus lactis subsp. cremoris NZ9000] Length = 513 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 49/173 (28%), Positives = 80/173 (46%), Gaps = 14/173 (8%) Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAAN 254 NV E V A +++ YCG G +A+ V ++I S+ AR N Sbjct: 316 NVLYGEAVKALNPKKDDRVIDAYCGVGTIGFAVAKKVKSVHGMDITPESIFDARENAKRL 375 Query: 255 HVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA 314 + N E +A R +N+ +R + VDPPR+GLDDA + + Sbjct: 376 GLKNCHY------EIGKAERIIPNWNK------SGHRATAMIVDPPRTGLDDALLETITK 423 Query: 315 YP--HILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 +P ++Y+SCN +L +DL +L+ + +E + D FP+T E V L ++ Sbjct: 424 FPPEKMVYVSCNVSTLAKDLVVLANYYKVEYIQSVDMFPHTARTEAVVKLTKR 476 >gi|116513129|ref|YP_812036.1| tRNA (uracil-5-)-methyltransferase related enzyme [Lactococcus lactis subsp. cremoris SK11] gi|116108783|gb|ABJ73923.1| 23S rRNA m(5)U-1939 methyltransferase [Lactococcus lactis subsp. cremoris SK11] Length = 513 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 49/173 (28%), Positives = 80/173 (46%), Gaps = 14/173 (8%) Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAAN 254 NV E V A +++ YCG G +A+ V ++I S+ AR N Sbjct: 316 NVLYGEAVKALNPKKDDRVIDAYCGVGTIGFAVAKKVKSVHGMDITPESIFDARENAKRL 375 Query: 255 HVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA 314 + N E +A R +N+ +R + VDPPR+GLDDA + + Sbjct: 376 GLKNCHY------EIGKAERIIPNWNK------SGHRATAMIVDPPRTGLDDALLETITK 423 Query: 315 YP--HILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 +P ++Y+SCN +L +DL +L+ + +E + D FP+T E V L ++ Sbjct: 424 FPPEKMVYVSCNVSTLAKDLVVLANYYKVEYIQSVDMFPHTARTEAVVKLTKR 476 >gi|56808950|ref|ZP_00366657.1| COG2265: SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Streptococcus pyogenes M49 591] Length = 436 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 86/382 (22%), Positives = 156/382 (40%), Gaps = 46/382 (12%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFR-------SEPIHYRMRAEFHIWHDGDDLYHIM 62 Y +QL K D +RQ + F+ + F +P HYR + +F + G + + Sbjct: 74 YPKQLDFKDDVIRQALKKFKPTGYEQFEIRPTLGMKKPDHYRAKLQFQLRSFGGTVKAGL 133 Query: 63 FDQQTKERMRIDYFMPGSLLINALM---IEMMATIRLEPLLRAKLFQIDYL----TSQSD 115 F Q + + ID + L ++ +++ +L K+ I + SD Sbjct: 134 FSQGSHRLVPIDNCLVQDQLTQDIINKITQLVDKYKLPIYNERKIAGIRTIMVRKAQASD 193 Query: 116 QAIVTLIYHRL---------LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY 166 Q + ++ + L A+ + ++ ++ +I ++T+I ++ Sbjct: 194 QVQIIVVSSKEVRLANFIGELTKAFPQVKTVALNSNRSKSSEI----YGDETEILWGQEA 249 Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAG-INVHMLEWVLAATKGIQGDLLELYCGNGNFSL 225 + E + G L R +F Q N V E V A G + +++ YCG G+ Sbjct: 250 IHEEVLDYGFALSPR----AFYQLNPQQTEVLYGEVVKALDVGSKDHIIDAYCGVGSIGF 305 Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285 A V ++I ++E A+ N A +N + +A + E + Sbjct: 306 AFAGKVKSVRGMDIIPEAIEDAQKNAKAMGFDNA---------YYEAGKAEDIIPKWYK- 355 Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTTHTIER 343 YR I VDPPR+GLDD + + Y ++Y+SCN +L RDL L+ + + Sbjct: 356 --QGYRADAIIVDPPRTGLDDKLLKTILHYQPKQMVYVSCNTSTLARDLVQLTKVYDVHY 413 Query: 344 LALFDQFPYTRHMECGVLLVRK 365 + D FP+T E V L ++ Sbjct: 414 IQSVDMFPHTARTEAVVKLQKR 435 >gi|154507954|ref|ZP_02043596.1| hypothetical protein ACTODO_00440 [Actinomyces odontolyticus ATCC 17982] gi|153797588|gb|EDN80008.1| hypothetical protein ACTODO_00440 [Actinomyces odontolyticus ATCC 17982] Length = 385 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 64/203 (31%), Positives = 93/203 (45%), Gaps = 25/203 (12%) Query: 171 LTVAGRTLIYRQIENSFTQPNAGINVHMLEW--VLAATKGIQGDLLE----LYCGNGNFS 224 L+V G L R SF Q NA + + E V A+ G L E LYCG G F+ Sbjct: 198 LSVEGLELGPR----SFAQTNAHVASTLYEQASVWASRPFTDGRLPESLWDLYCGVGGFA 253 Query: 225 LVLARH-FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 L AR F RV VE++ ++ +A AA H + + A R + + Sbjct: 254 LACARSGFPRVTGVEVSPGAISSAIS--AARHAGLSRGAATFIADDATAWARAQSPEDVP 311 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILSTTHTI 341 D+ I ++PPR G+ + P ++Y SCNP SL +DL+ + T + Sbjct: 312 DV---------IVINPPRRGIGADLAAYLNECDAPRVIYSSCNPASLAKDLTSMPTLFPV 362 Query: 342 ERLALFDQFPYTRHMECGVLLVR 364 E +FD FP+T H+E +LL R Sbjct: 363 EGR-VFDMFPHTPHVEAALLLER 384 >gi|302386126|ref|YP_003821948.1| RNA methyltransferase, TrmA family [Clostridium saccharolyticum WM1] gi|302196754|gb|ADL04325.1| RNA methyltransferase, TrmA family [Clostridium saccharolyticum WM1] Length = 453 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 62/234 (26%), Positives = 109/234 (46%), Gaps = 25/234 (10%) Query: 137 RLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINV 196 R+ LH + + ++++T I +DY E L + ++ SF Q N+ + Sbjct: 238 RIVGILHIFNDSLADVVKSDRTDILYGQDYFYEELL----GMKFKISPFSFFQTNS-LGA 292 Query: 197 HMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAAN 254 +L + G D + +LY G G + ++A +V+ VEI K +V+AA+ N N Sbjct: 293 EVLYETVRRYVGETKDKVVFDLYSGTGTIAQMIAPVAKKVVGVEIVKEAVDAAKENTRLN 352 Query: 255 HVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA 314 + N + + + + LK ID + I +DPPR G+ +G + Sbjct: 353 GLENCEFI---------------DGDVLKVIDELPDKPDLIILDPPRDGIHPKALGKIID 397 Query: 315 YP--HILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVRK 365 + ++Y+SC P SL RDL +L + +E+ D FP T ++E ++L RK Sbjct: 398 FGVDRLVYVSCKPTSLARDLVVLQERGYKVEKACCVDMFPSTANVETIMMLERK 451 >gi|15675488|ref|NP_269662.1| putative RNA methyltransferase [Streptococcus pyogenes M1 GAS] gi|71911132|ref|YP_282682.1| tRNA (uracil-5-)-methyltransferase [Streptococcus pyogenes MGAS5005] gi|50401662|sp|Q99YP3|Y1606_STRP1 RecName: Full=Uncharacterized RNA methyltransferase SPy_1606/M5005_Spy1319 gi|13622683|gb|AAK34383.1| putative RNA methyltransferase [Streptococcus pyogenes M1 GAS] gi|71853914|gb|AAZ51937.1| tRNA (uracil-5-)-methyltransferase [Streptococcus pyogenes MGAS5005] Length = 451 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 85/382 (22%), Positives = 157/382 (41%), Gaps = 46/382 (12%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFR-------SEPIHYRMRAEFHIWHDGDDLYHIM 62 Y +QL K D +RQ + F+ + F +P HYR + +F + G + + Sbjct: 89 YPKQLDFKDDVIRQALKKFKPTGYEQFEIRPTLGMKKPDHYRAKLQFQLRSFGGTVKAGL 148 Query: 63 FDQQTKERMRIDYFMPGSLLINALM---IEMMATIRLEPLLRAKLFQIDYL----TSQSD 115 F Q + + ID + L ++ +++ +L K+ I + SD Sbjct: 149 FSQGSHRLVPIDNCLVQDQLTQDIINKITQLVDKYKLPIYNERKIAGIRTIMVRKAQASD 208 Query: 116 QAIVTLIYHRL---------LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY 166 Q + ++ + L A+ + ++ ++ +I ++T+I ++ Sbjct: 209 QVQIIVVSSKEVRLANFIGELTKAFPQVKTVALNSNRSKSSEI----YGDETEILWGQEA 264 Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAG-INVHMLEWVLAATKGIQGDLLELYCGNGNFSL 225 + E + G L R +F Q N V E V A G + +++ YCG G+ Sbjct: 265 IHEEVLDYGFALSPR----AFYQLNPQQTEVLYGEVVKALDVGSKDHIIDAYCGVGSIGF 320 Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285 A V ++I ++E A+ N A +N + +A + E ++ Sbjct: 321 AFAGKVKSVRGMDIIPEAIEDAQKNAKAMGFDNA---------YYEAGKAEDIISKWYK- 370 Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTTHTIER 343 YR + VDPPR+GLDD + + Y ++Y+SCN +L RDL L+ + + Sbjct: 371 --QGYRADAVIVDPPRTGLDDKLLKTILHYQPKQMVYVSCNTSTLARDLVQLTKVYDVHY 428 Query: 344 LALFDQFPYTRHMECGVLLVRK 365 + D FP+T E V L ++ Sbjct: 429 IQSVDMFPHTARTEAVVKLQKR 450 >gi|297583617|ref|YP_003699397.1| TrmA family RNA methyltransferase [Bacillus selenitireducens MLS10] gi|297142074|gb|ADH98831.1| RNA methyltransferase, TrmA family [Bacillus selenitireducens MLS10] Length = 464 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 96/385 (24%), Positives = 154/385 (40%), Gaps = 51/385 (13%) Query: 10 YEQQLAEKVDRLRQMM--LAFQVPNLQ--IFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ 65 YE QLA K + ++ + F ++ I EP HYR + EF DG H + Sbjct: 100 YESQLAHKTESVKNGLEEQGFDPGRVKPAIGMKEPWHYRNKMEFTFSTDGKMGLH----E 155 Query: 66 QTKERMRIDY---FMPGSLLINALMIEMMATIRLE----------PLLRAKLFQIDYLTS 112 Q R I + G+ +++A MI E LLR + + + T Sbjct: 156 QGNFRGIIPLETCLIAGNEMVDAAMIVSNWAKEFELPGYDKDAHTGLLRHLMVRQSFNTG 215 Query: 113 QSDQAI-VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERL 171 + + T LD A RE R+ K + L + DR +E Sbjct: 216 EIMLGVFATASPDGELDRAVRELISRIERNAPQVKSVMWL-----ENNDWADRAQSEETH 270 Query: 172 TVAGRTLIYRQIE--------NSFTQPNAGINVHMLEWVLAATKG-IQGDLLELYCGNGN 222 + GR IY ++ ++F Q N +++ L K +++L+CG G Sbjct: 271 CLFGRDYIYDEMAGYRFRLWFDTFFQTNPRQAEVLVDEALKLGKPEAHEKMIDLFCGVGT 330 Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282 FSL A + +EI + S+ +A+ N N + N + +++ M E L Sbjct: 331 FSLPFASRVKALAGIEIVESSIASAKRNAEDNGLVNTTFLAKDARKGIDQMLEEFGHPEL 390 Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYP-HILYISCNPDSLCRDLSILST-TH 339 + +DPPRSG + + +A P I+Y+SCNPD+ D L + Sbjct: 391 ------------LMLDPPRSGAGGKVMRRIGRAKPDRIVYVSCNPDTFATDCKELEPFGY 438 Query: 340 TIERLALFDQFPYTRHMECGVLLVR 364 +E + D FP+T H+E LL R Sbjct: 439 QLESVQPVDMFPHTFHVELVALLTR 463 >gi|330685548|gb|EGG97194.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus epidermidis VCU121] Length = 453 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 47/161 (29%), Positives = 75/161 (46%), Gaps = 16/161 (9%) Query: 209 IQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266 + GD +L+ YCG G ++ +A + V VE+ ++ A N N + N V + Sbjct: 305 LTGDEIVLDTYCGIGTIAIYMAENARHVYGVEVVPSAINDANQNATKNQLENTTFVCGKA 364 Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCN 324 +E + E R + VDPPR G D+ + +++ P I+YISCN Sbjct: 365 EEVILKWKAE------------GIRPDVVMVDPPRKGCDETFLETILELNPKRIVYISCN 412 Query: 325 PDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 P + RD IL+ + ++ + D FP T H+E L RK Sbjct: 413 PSTQQRDAHILNHQYDLKEITPVDMFPQTTHIETVALFERK 453 >gi|281492836|ref|YP_003354816.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactococcus lactis subsp. lactis KF147] gi|281376488|gb|ADA65974.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactococcus lactis subsp. lactis KF147] Length = 513 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 49/173 (28%), Positives = 80/173 (46%), Gaps = 14/173 (8%) Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAAN 254 NV E V A +++ YCG G +A+ V ++I S+ AR N Sbjct: 316 NVLYGEAVKALNPKKDDRVIDAYCGVGTIGFAVAKKVKSVHGMDITPESIFDARENAKRL 375 Query: 255 HVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA 314 + N E +A R +N+ +R + VDPPR+GLDDA + + Sbjct: 376 GLKNCHY------EIGKAERIIPNWNK------SGHRATAMIVDPPRTGLDDALLETITK 423 Query: 315 YP--HILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 +P ++Y+SCN +L +DL +L+ + +E + D FP+T E V L ++ Sbjct: 424 FPPEKMVYVSCNVSTLAKDLVVLANYYKVEYIQSVDMFPHTARTEAVVKLTKR 476 >gi|225388648|ref|ZP_03758372.1| hypothetical protein CLOSTASPAR_02384 [Clostridium asparagiforme DSM 15981] gi|225045246|gb|EEG55492.1| hypothetical protein CLOSTASPAR_02384 [Clostridium asparagiforme DSM 15981] Length = 467 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 69/267 (25%), Positives = 119/267 (44%), Gaps = 31/267 (11%) Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWRECAI------RLRDALHARKYQIQLIGRANKTKI 160 +D +T+ + + T + + W+E + R LH + + ++++T + Sbjct: 213 VDLVTTTQTEYLGTDMQEDQVLGGWKERLLGLELEGRFAGILHTLNDSLADVVQSDRTDV 272 Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYC 218 +DY E L L +R SF Q N+ + +L + + G D + +LY Sbjct: 273 LYGQDYFYEELL----GLRFRISPFSFFQTNS-LGAEVLYDMARSYVGETKDKVVFDLYS 327 Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278 G G + +LA +V+ VEI + +VEAAR N N + N EF Sbjct: 328 GTGTIAQILAPVAKKVVGVEIVEEAVEAARMNAKLNGLENC--------EFLAG------ 373 Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILS 336 + LK ID + I +DPPR G+ + + + ++YISC P SL RDL +L Sbjct: 374 -DVLKVIDEIQDKPDLIMLDPPRDGIHPKALNKIIEFGVERMVYISCKPTSLARDLVVLQ 432 Query: 337 T-THTIERLALFDQFPYTRHMECGVLL 362 + +E+ D FP T ++E +++ Sbjct: 433 ERGYRVEKGGAVDMFPGTGNVEVVIMM 459 >gi|71420165|ref|XP_811388.1| hypothetical protein [Trypanosoma cruzi strain CL Brener] gi|70876047|gb|EAN89537.1| hypothetical protein, conserved [Trypanosoma cruzi] Length = 568 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 61/196 (31%), Positives = 90/196 (45%), Gaps = 27/196 (13%) Query: 185 NSFTQPN-AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 SF Q N +G+ + + E A G + LL+L CG G L LA+H RV+ +E+ + + Sbjct: 375 TSFFQVNTSGMELLLCETAKVAALGPKTTLLDLCCGTGVIGLTLAKHVKRVIGIELVESA 434 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFV---DPP 300 V AR N N + NV + + N L + D KT V DPP Sbjct: 435 VNDARQNAKRNDIANVTFCSGRVEHLLPDI-----INSLPEED------KTDIVAILDPP 483 Query: 301 RSGLDDATVGMVQAYPHI---LYISCNPDSLCRDLSILSTTHT-------IERLALF--D 348 R+G+ + ++ P I +YISC +L RD L+ + T E +A F D Sbjct: 484 RAGVTPTVLKWIRGTPTIRRVVYISCEQKALERDCPSLTKSTTKAYRGLPFELVASFAVD 543 Query: 349 QFPYTRHMECGVLLVR 364 FP+T H+E +L R Sbjct: 544 LFPHTPHVEMVAVLAR 559 >gi|319654160|ref|ZP_08008249.1| hypothetical protein HMPREF1013_04869 [Bacillus sp. 2_A_57_CT2] gi|317394094|gb|EFV74843.1| hypothetical protein HMPREF1013_04869 [Bacillus sp. 2_A_57_CT2] Length = 460 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 44/150 (29%), Positives = 74/150 (49%), Gaps = 16/150 (10%) Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276 YCG G L +A + ++I + S+E A+ N + + + + V ++E+ ++ Sbjct: 321 YCGVGTIGLWVADQAAEIRGMDIIRESIEDAKKNADRHGIKHAQYVVGKAEEWLPKWTKD 380 Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDD---ATVGMVQAYPHILYISCNPDSLCRDLS 333 +R I VDPPR+GLD T+ VQ ++Y+SCNP +L +D+S Sbjct: 381 ------------GWRPDVIIVDPPRTGLDHQLLKTILKVQPK-KVVYVSCNPSTLAKDIS 427 Query: 334 ILSTTHTIERLALFDQFPYTRHMECGVLLV 363 +LS + + + D FP T H+E LV Sbjct: 428 VLSPKYKVIGIQPVDMFPQTAHVESVTQLV 457 >gi|115435048|ref|NP_001042282.1| Os01g0193600 [Oryza sativa Japonica Group] gi|9988445|dbj|BAB12711.1| putative RNA methyltransferase [Oryza sativa Japonica Group] gi|10934074|dbj|BAB16852.1| putative RNA methyltransferase [Oryza sativa Japonica Group] gi|113531813|dbj|BAF04196.1| Os01g0193600 [Oryza sativa Japonica Group] gi|215697095|dbj|BAG91089.1| unnamed protein product [Oryza sativa Japonica Group] Length = 557 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 61/215 (28%), Positives = 93/215 (43%), Gaps = 34/215 (15%) Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD----LLELYCGNG 221 Y +T R L ++ NSF Q N +L ++ + G++GD +L+L+CG G Sbjct: 356 YGKPTITEMLRGLTFQISANSFFQTNTK-QADVLYKLIGESAGLKGDGSEIILDLFCGTG 414 Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281 L LAR V E+ ++ A+ N N ++N V+ + + +E Sbjct: 415 TIGLTLARRAKHVYGYEVVPEAIADAKKNAKLNGISNATFVQGDLNKINETFGKE----- 469 Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGM---VQAYPHILYISCNPDSLCRDLSILSTT 338 DI I DP R G+ + V+A P I+Y+SCNP + RDL L Sbjct: 470 FPKPDI-------IISDPNRPGMHMKLIKWLLEVKA-PRIVYVSCNPATCARDLDYLC-- 519 Query: 339 HTIERLAL-----------FDQFPYTRHMECGVLL 362 H +E L D FP+T H+EC +L Sbjct: 520 HGVEEKDLKGCYELKTVIPVDMFPHTPHIECICVL 554 >gi|328950985|ref|YP_004368320.1| (Uracil-5)-methyltransferase [Marinithermus hydrothermalis DSM 14884] gi|328451309|gb|AEB12210.1| (Uracil-5)-methyltransferase [Marinithermus hydrothermalis DSM 14884] Length = 408 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 52/154 (33%), Positives = 79/154 (51%), Gaps = 20/154 (12%) Query: 214 LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273 +ELY G G S LA FD ++AVE+++ +++ + + + NV+ R + Sbjct: 272 VELYAGGGVLSFHLAAAFDEIVAVELSRAAIQKGQADARRLGLPNVRFHRGDA------- 324 Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCRD 331 RE R D+ + VDPPR+GL V +++A PH ILYISC+P + RD Sbjct: 325 ---RELVRFAPADL-------VAVDPPRAGLAPEVVRTLLEARPHQILYISCDPATWARD 374 Query: 332 LSILSTTHTIERLA-LFDQFPYTRHMECGVLLVR 364 + L R A +D +P+T H+E LLVR Sbjct: 375 VKRLVAGGYRLRFARPYDFYPFTHHVEVLSLLVR 408 >gi|296451840|ref|ZP_06893559.1| 23S rRNA (uracil-5-)-methyltransferase [Clostridium difficile NAP08] gi|296879764|ref|ZP_06903738.1| 23S rRNA (uracil-5-)-methyltransferase [Clostridium difficile NAP07] gi|296259319|gb|EFH06195.1| 23S rRNA (uracil-5-)-methyltransferase [Clostridium difficile NAP08] gi|296429235|gb|EFH15108.1| 23S rRNA (uracil-5-)-methyltransferase [Clostridium difficile NAP07] Length = 452 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 45/157 (28%), Positives = 80/157 (50%), Gaps = 17/157 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + ++YCG G SL LA+ +V +EI +++ A+ N N+++N + ++E Sbjct: 309 VFDIYCGIGTISLFLAQKAKKVYGIEIIDDAIKDAKINAKLNNMHNAEFYVGKAEEIVPK 368 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330 M RE + + + VDPPR G D+ + +V P I+Y+SCNP +L R Sbjct: 369 MYREGKTANV------------VVVDPPRKGCDEKVLETIVSMSPERIVYVSCNPSTLAR 416 Query: 331 DLSILSTTHTIERLAL--FDQFPYTRHMECGVLLVRK 365 DL L+ H + + D FP++ H+E ++++ Sbjct: 417 DLDYLN-VHGFKCVEAQPVDMFPHSTHVETVAKIIKQ 452 >gi|270294142|ref|ZP_06200344.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides sp. D20] gi|317478899|ref|ZP_07938047.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides sp. 4_1_36] gi|270275609|gb|EFA21469.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides sp. D20] gi|316904933|gb|EFV26739.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides sp. 4_1_36] Length = 473 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 57/203 (28%), Positives = 95/203 (46%), Gaps = 24/203 (11%) Query: 172 TVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGDLL--ELYCGNG 221 T G+ I+ ++E SF Q N+ + L V G+ G+ L +LY G G Sbjct: 279 TFKGKDHIFEEMEGLRFKVGPKSFYQTNSE-QAYNLYKVARNFAGLTGNELVYDLYTGTG 337 Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281 + +++H +V+ +E ++E A+ N N + N K+ M + N+ Sbjct: 338 TIANFVSKHARQVIGIEYVPEAIEDAKVNAEINGIKNTLFFAGDMKD----MLTQDFINQ 393 Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ-AYPH-ILYISCNPDSLCRDLSILSTTH 339 D+ I DPPR+G+ V ++ A P I+Y+SCNP + RDL +L + Sbjct: 394 YGRPDV-------IITDPPRAGMHQDVVDVILFAEPKRIVYVSCNPATQARDLQLLDAKY 446 Query: 340 TIERLALFDQFPYTRHMECGVLL 362 ++ + D FP+T H+E VLL Sbjct: 447 KVKAVQPVDMFPHTHHVENVVLL 469 >gi|222617909|gb|EEE54041.1| hypothetical protein OsJ_00721 [Oryza sativa Japonica Group] Length = 558 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 61/215 (28%), Positives = 93/215 (43%), Gaps = 34/215 (15%) Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD----LLELYCGNG 221 Y +T R L ++ NSF Q N +L ++ + G++GD +L+L+CG G Sbjct: 357 YGKPTITEMLRGLTFQISANSFFQTNTK-QADVLYKLIGESAGLKGDGSEIILDLFCGTG 415 Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281 L LAR V E+ ++ A+ N N ++N V+ + + +E Sbjct: 416 TIGLTLARRAKHVYGYEVVPEAIADAKKNAKLNGISNATFVQGDLNKINETFGKE----- 470 Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGM---VQAYPHILYISCNPDSLCRDLSILSTT 338 DI I DP R G+ + V+A P I+Y+SCNP + RDL L Sbjct: 471 FPKPDI-------IISDPNRPGMHMKLIKWLLEVKA-PRIVYVSCNPATCARDLDYLC-- 520 Query: 339 HTIERLAL-----------FDQFPYTRHMECGVLL 362 H +E L D FP+T H+EC +L Sbjct: 521 HGVEEKDLKGCYELKTVIPVDMFPHTPHIECICVL 555 >gi|170017687|ref|YP_001728606.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Leuconostoc citreum KM20] gi|169804544|gb|ACA83162.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Leuconostoc citreum KM20] Length = 473 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 57/187 (30%), Positives = 89/187 (47%), Gaps = 21/187 (11%) Query: 185 NSFTQPNAGINVHMLEWVLAATK-GIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAK 241 NSF Q N + + LAA K G++ +++ Y G G +L +A +V VE+ + Sbjct: 301 NSFYQINPQTTAVL--YTLAAEKAGLKPTDVVVDAYSGIGTITLSIADQVAKVYGVEVVE 358 Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301 +V A N NH++NV+ V + E ++ + +FVDPPR Sbjct: 359 DAVLDAEKNAQNNHIDNVEFVTADAPE------------QMTQWAADGLKPDVVFVDPPR 406 Query: 302 SGLDDATVGMVQAY--PHILYISCNPDSLCRD-LSILSTTHTIE-RLALFDQFPYTRHME 357 GL + + V A +YISCNP +L RD + IL+ I+ + DQFP T H+E Sbjct: 407 KGLTNELISAVSAMQPKTFVYISCNPATLARDTVQILAEGFHIDGPIQPIDQFPQTTHVE 466 Query: 358 CGVLLVR 364 ++ R Sbjct: 467 SVLIFKR 473 >gi|29828931|ref|NP_823565.1| RNA methyltransferase [Streptomyces avermitilis MA-4680] gi|50401776|sp|Q93HB4|Y2389_STRAW RecName: Full=Uncharacterized RNA methyltransferase SAV_2389 gi|15824109|dbj|BAB69275.1| putative methyltransferase [Streptomyces avermitilis] gi|29606036|dbj|BAC70100.1| putative RNA methyltransferase [Streptomyces avermitilis MA-4680] Length = 433 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 66/206 (32%), Positives = 101/206 (49%), Gaps = 27/206 (13%) Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGN 222 R +V ER GRT YR F Q + +++ V+ +GD+ L+LYCG G Sbjct: 241 RAFVRERAD--GRT--YRVGSGGFWQVHPMAADTLVKAVMQGLLPRKGDMALDLYCGVGL 296 Query: 223 FSLVLA-RHFDR--VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279 F+ LA R D+ VL +E K +VE AR+N+AA + VR+ + + R Sbjct: 297 FAGALADRLGDKGAVLGIESGKRAVEDARHNLAA-----FERVRIEQGKVEAVLPR---- 347 Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSIL-S 336 + ++D+ I +DPPR+G TV + + I Y++C+P +L RDL Sbjct: 348 TGITEVDL-------IVLDPPRAGAGKKTVEQLVSLGARKIAYVACDPAALARDLGYFRD 400 Query: 337 TTHTIERLALFDQFPYTRHMECGVLL 362 + + L FD FP T H+EC +L Sbjct: 401 GGYKVRTLRAFDLFPMTHHVECVAIL 426 >gi|317498282|ref|ZP_07956581.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lachnospiraceae bacterium 5_1_63FAA] gi|316894491|gb|EFV16674.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lachnospiraceae bacterium 5_1_63FAA] Length = 454 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 68/245 (27%), Positives = 108/245 (44%), Gaps = 39/245 (15%) Query: 137 RLRDALHARKYQIQLIG-------------RANKTKICLDRDYVDERLTVAGRTLIYRQI 183 +LRDAL ++IG +A+K I +DY E + L ++ Sbjct: 227 KLRDALLELPLSGKIIGILHTTNDSLADVVQADKIDILYGQDYFYEEIL----GLKFKIS 282 Query: 184 ENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAK 241 SF Q N + +L G D + +LY G G + +LA +V+ VEI + Sbjct: 283 PFSFFQTNT-LGAEVLYKTARDFVGETKDKVIFDLYSGTGTIAQMLAPVAKKVVGVEIVE 341 Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301 +VEAA+ N N ++N + + + + + +F I +DPPR Sbjct: 342 EAVEAAKVNAELNGLDNCEFIAGDVLKVVDELEDKPDF---------------IVLDPPR 386 Query: 302 SGLDDATV-GMVQAY--PHILYISCNPDSLCRDLSILS-TTHTIERLALFDQFPYTRHME 357 G+ + ++ +Y +LYISC P SL RDL IL+ + + + DQFP T H+E Sbjct: 387 DGIHPKAIQKIIDSYRCERMLYISCKPTSLARDLEILADAGYKVIKATAVDQFPNTVHIE 446 Query: 358 CGVLL 362 LL Sbjct: 447 TICLL 451 >gi|218187673|gb|EEC70100.1| hypothetical protein OsI_00745 [Oryza sativa Indica Group] Length = 624 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 59/205 (28%), Positives = 90/205 (43%), Gaps = 34/205 (16%) Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD----LLELYCGNGNFSLVLARHF 231 R L ++ NSF Q N +L ++ + G++GD +L+L+CG G L LAR Sbjct: 433 RGLTFQISANSFFQTNTK-QADVLYKLIGESAGLKGDGSEIILDLFCGTGTIGLTLARRA 491 Query: 232 DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291 V E+ ++ A+ N N ++N V+ + + +E DI Sbjct: 492 KHVYGYEVVPEAIADAKKNAKLNGISNATFVQGDLNKINETFGKE-----FPKPDI---- 542 Query: 292 FKTIFVDPPRSGLDDATVGM---VQAYPHILYISCNPDSLCRDLSILSTTHTIERLAL-- 346 I DP R G+ + V+A P I+Y+SCNP + RDL L H +E L Sbjct: 543 ---IISDPNRPGMHMKLIKWLLEVKA-PRIVYVSCNPATCARDLDYL--CHGVEEKDLKG 596 Query: 347 ---------FDQFPYTRHMECGVLL 362 D FP+T H+EC +L Sbjct: 597 CYELKTVIPVDMFPHTPHIECICVL 621 >gi|327299650|ref|XP_003234518.1| tRNA(m5U54)methyltransferase [Trichophyton rubrum CBS 118892] gi|326463412|gb|EGD88865.1| tRNA(m5U54)methyltransferase [Trichophyton rubrum CBS 118892] Length = 545 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 47/159 (29%), Positives = 77/159 (48%), Gaps = 20/159 (12%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 LL+ YCG+G F++VL+ F L +++A S++ AR N ++V N + Sbjct: 393 LLDAYCGSGLFTIVLSGTFRSSLGIDVAASSIKCARENAKLSNVPNTGFAAADAAAL--- 449 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330 KD+ +Y+ + +DPPR G D + + AY +LY+SCN + R Sbjct: 450 ---------FKDVPYPAYQ-TLLVIDPPRKGCDTNFLNQLLAYGPTRVLYVSCNVHTQAR 499 Query: 331 DLSIL-----STTHTIERLALFDQFPYTRHMECGVLLVR 364 D+ +L + IE + FD FP T H+E +L + Sbjct: 500 DVGVLVEGKNGVRYDIESIRGFDFFPQTSHVESVAVLTK 538 >gi|312898459|ref|ZP_07757849.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Megasphaera micronuciformis F0359] gi|310620378|gb|EFQ03948.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Megasphaera micronuciformis F0359] Length = 460 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 89/392 (22%), Positives = 159/392 (40%), Gaps = 66/392 (16%) Query: 10 YEQQLAEK-------VDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIM 62 YE QLAEK V+R+ ++ +P L +P YR + + + D L+ Sbjct: 95 YEGQLAEKRQQVQDAVERIGKLKDVPVLPTLGA--DDPWAYRNKMQLPVGGDKRSLHIGC 152 Query: 63 FDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRA--KLFQI-----DYLTS--- 112 F +++ + ID A I+ + P++R K ++I D T Sbjct: 153 FAEKSHRIIDID----------ACPIQKGGNNEIIPVVRQWMKEYKIPAYDEDKGTGMIR 202 Query: 113 --------QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGR-------ANK 157 S + +V ++ + +E LR + IQ I NK Sbjct: 203 HIMGRTGVHSGEIMVCIVTAVPMVPHMKELVQMLRKDVPGLTSVIQNINSRHTNVILGNK 262 Query: 158 TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL--AATKGIQGDLLE 215 TK+ + + + L +R SF Q N+ + + L A KG + +++ Sbjct: 263 TKVIYGSPTISDSIG----DLSFRISAQSFFQVNSEQAQKLYDTALSYADLKGNE-TVVD 317 Query: 216 LYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275 +YCG G +L LA +EI +P++ A N N V N + + Sbjct: 318 VYCGTGTITLFLAERAKFAYGIEIVEPAIRDAVKNARDNGVKNAHFMCGDAA-------- 369 Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLS 333 +L ++ + I +DPPR+G ++ + + + ++Y+SCNP +L RDL+ Sbjct: 370 ----YKLPELLRSGVKPDVIVIDPPRAGCEEKVLNAIASVRPKRVVYVSCNPATLARDLA 425 Query: 334 ILST-THTIERLALFDQFPYTRHMECGVLLVR 364 + T + +++ D FP T H+E L+ R Sbjct: 426 YMKTRGYETQKVQPVDMFPQTHHVETACLMSR 457 >gi|302541981|ref|ZP_07294323.1| putative tRNA (Uracil-5-)-methyltransferase [Streptomyces hygroscopicus ATCC 53653] gi|302459599|gb|EFL22692.1| putative tRNA (Uracil-5-)-methyltransferase [Streptomyces himastatinicus ATCC 53653] Length = 447 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 65/212 (30%), Positives = 101/212 (47%), Gaps = 29/212 (13%) Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGN 222 R +V ER A RT +R E F Q + ++E V+ +GD L+LYCG G Sbjct: 255 RPFVRER--AADRT--WRVGEGGFWQVHPKAADLLVEAVMQGLMPRKGDTALDLYCGVGL 310 Query: 223 FSLVLARHFDR---VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279 F+ L VL +E +K + E AR+N+ ++ VR+ + Q + R Sbjct: 311 FAGALGERVGERGAVLGIESSKRAAEDARHNL-----QDLDRVRIEHGKVEQVLPR---- 361 Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSIL-S 336 + + D+ I +DPPR+G TV + + I Y++C+P +L RDL+ Sbjct: 362 TGITEADL-------IVLDPPRAGAGKETVAHLASLGARRIAYVACDPAALARDLAYFHD 414 Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVRKPSG 368 + RL FD FP T H+EC + V +P+G Sbjct: 415 AGYAPRRLRAFDLFPVTHHVEC--VAVLEPAG 444 >gi|159897144|ref|YP_001543391.1| RNA methyltransferase [Herpetosiphon aurantiacus ATCC 23779] gi|159890183|gb|ABX03263.1| RNA methyltransferase, TrmA family [Herpetosiphon aurantiacus ATCC 23779] Length = 423 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 94/349 (26%), Positives = 149/349 (42%), Gaps = 71/349 (20%) Query: 38 SEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLI----NALMIE--MM 91 EP HYR A H+ DG R+ ++ G I L+I+ + Sbjct: 123 GEPWHYRSVARVHV--DGQ---------------RVGFYAAGGRQIVEFDQCLIIDPRLN 165 Query: 92 ATI-RLEPLLR-AKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQI 149 ATI RL+PLL L +I S +D I + + AWR A R A Sbjct: 166 ATIERLKPLLPLIGLREISLRLSTTDGTIHGHLIGQG-QSAWRSWARRWMSA------DA 218 Query: 150 QLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIEN--------SFTQPN---AGINVHM 198 + G ++ T+ + + +AG +Y Q+ + SF Q N A + Sbjct: 219 TIAGVSSATR--------EGWMALAGAEYLYEQLGDVRLRIAPTSFFQANVERARAVLQQ 270 Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN 258 +E L + LL+ +CG G F L LA + +E ++ A+ + AN ++N Sbjct: 271 IECFLPLNNTTR--LLDGFCGVGTFLLPLAHNIGHGWGIEEHPAAIRDAQASAKANQLSN 328 Query: 259 VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH 317 V + + + E +LK +F VDPPR G++ A + ++ A P Sbjct: 329 VTL---------KTGKVEAILPQLKQ------QFDLAIVDPPRRGVEPAALNALIAAQPT 373 Query: 318 -ILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364 I Y+SC+P +L RD+ +L + +TI+ D FP T H+E VLL + Sbjct: 374 MIAYVSCHPGTLARDIKLLQAGGYTIQHAQPHDFFPQTSHVESLVLLSK 422 >gi|315282728|ref|ZP_07871069.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria marthii FSL S4-120] gi|313613628|gb|EFR87431.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria marthii FSL S4-120] Length = 453 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 45/153 (29%), Positives = 75/153 (49%), Gaps = 15/153 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G+ SL LA+ V VEI +++ AR N N + N ++E A Sbjct: 310 VIDAYCGIGSISLCLAKKAKHVYGVEIVDQAIQDARANAELNELTNTTFETGKAEEVIPA 369 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330 + + D+ + VDPPR G D+ + + A ++Y+SCNP +L R Sbjct: 370 WYKA---GIVADV---------LVVDPPRKGCDEKLLETILAMKPKKVVYVSCNPGTLAR 417 Query: 331 DLSILS-TTHTIERLALFDQFPYTRHMECGVLL 362 D+ IL+ + +++ D FP T H+E +L Sbjct: 418 DMKILTDGGYVAKKVQPVDMFPMTTHIEAVTVL 450 >gi|291548601|emb|CBL24863.1| 23S rRNA m(5)U-1939 methyltransferase [Ruminococcus torques L2-14] Length = 567 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 53/166 (31%), Positives = 83/166 (50%), Gaps = 13/166 (7%) Query: 209 IQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266 ++GD + +LYCG G SL LA+ +V VEI +++ A+ N N ++N + + Sbjct: 305 LKGDETVWDLYCGIGTISLFLAQKAKQVYGVEIVPQAIDDAKENAKINAIDNAEFFVGKA 364 Query: 267 KEFTQA--MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYIS 322 +E ERE N + I VDPPR G D+ + +V+ P ++Y+S Sbjct: 365 EEVLPEYYAEYEREHNG------KTAHADVIVVDPPRKGCDETLLETIVKMQPEKVVYVS 418 Query: 323 CNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRKPS 367 C+ +L RDL L + + I DQFP + H+E VLL K + Sbjct: 419 CDSATLARDLKYLCANGYEIRMCRGVDQFPQSVHVETVVLLSHKKA 464 >gi|326407755|gb|ADZ64826.1| uracil-5-23S rRNA methyltransferase RumA [Lactococcus lactis subsp. lactis CV56] Length = 513 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 49/173 (28%), Positives = 80/173 (46%), Gaps = 14/173 (8%) Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAAN 254 NV E V A +++ YCG G +A+ V ++I S+ AR N Sbjct: 316 NVLYGEAVKALNPKKDDRVIDAYCGVGTIGFAVAKKVKSVHGMDITPESIFDARENAKRL 375 Query: 255 HVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA 314 + N E +A R +N+ +R + VDPPR+GLDDA + + Sbjct: 376 GLKNCHY------EIGKAERIIPNWNK------SGHRATAMIVDPPRTGLDDALLETITK 423 Query: 315 YP--HILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 +P ++Y+SCN +L +DL +L+ + +E + D FP+T E V L ++ Sbjct: 424 FPPEKMVYVSCNVSTLAKDLVVLANYYKVEYIQSVDMFPHTARTEAVVKLTKR 476 >gi|255505413|ref|ZP_05345917.3| 23S rRNA (uracil-5-)-methyltransferase RumA [Bryantella formatexigens DSM 14469] gi|255268319|gb|EET61524.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bryantella formatexigens DSM 14469] Length = 466 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 49/152 (32%), Positives = 78/152 (51%), Gaps = 16/152 (10%) Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE-FTQAM 273 +LYCG G SL LA+ +V VE+ +++ A N N + N + ++E + Sbjct: 324 DLYCGIGTISLFLAQQARQVYGVEVIPQAIDDACRNAKINGIANAQFFVGRAEEILPEVY 383 Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCRD 331 RR R IH+ + I VDPPR G DD+ + +++ P ++Y+SC+ +L RD Sbjct: 384 RRHR---------IHA---EVIVVDPPRKGCDDSLLSTIIEMQPERVVYVSCDSATLARD 431 Query: 332 LSILS-TTHTIERLALFDQFPYTRHMECGVLL 362 L IL + ++R DQFP + H+E L Sbjct: 432 LRILCDNGYALKRCRAVDQFPMSVHVETAAQL 463 >gi|296270254|ref|YP_003652886.1| deoxyribonuclease/rho motif-related TRAM [Thermobispora bispora DSM 43833] gi|296093041|gb|ADG88993.1| deoxyribonuclease/rho motif-related TRAM [Thermobispora bispora DSM 43833] Length = 407 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 58/194 (29%), Positives = 89/194 (45%), Gaps = 27/194 (13%) Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFD---RVL 235 +R + F Q + G +L VL + G+ L+LYCG G F+ L VL Sbjct: 233 FRVTGSGFWQIHPGAPETLLRTVLELGRPAPGERALDLYCGAGLFAAGLGEAVGPEGSVL 292 Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295 +E +V AR+N+ + N +I E R+++ + R + Sbjct: 293 GIESDPQAVRDARWNL--RDLPNTRI----------------ERGRVEEALGAAARADLV 334 Query: 296 FVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTTHTIE--RLALFDQFP 351 DPPR+GL V + +Y+SC+P ++ RD++ L T H E L FDQ+P Sbjct: 335 VADPPRTGLGREVVERIAGLGPSRFVYVSCDPATMSRDIAWL-TPHGYELAELRAFDQYP 393 Query: 352 YTRHMECGVLLVRK 365 T H+EC LLVR+ Sbjct: 394 MTHHVECVALLVRR 407 >gi|326204866|ref|ZP_08194719.1| RNA methyltransferase, TrmA family [Clostridium papyrosolvens DSM 2782] gi|325984915|gb|EGD45758.1| RNA methyltransferase, TrmA family [Clostridium papyrosolvens DSM 2782] Length = 462 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 48/156 (30%), Positives = 79/156 (50%), Gaps = 19/156 (12%) Query: 208 GIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265 G+ G+ + +LYCG G SL L++ V+ VE+ ++ A+ N N V+NV+ + Sbjct: 308 GLSGNETVFDLYCGIGTISLFLSQKAKHVVGVEVVADAICDAKRNAEINGVSNVEFLVGE 367 Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISC 323 +++ + ++ + + VDPPR G D + +V+ P I+Y+SC Sbjct: 368 AEKV------------IPELYAQGVKADVVVVDPPRKGCDQLLLNTLVEMQPQRIVYVSC 415 Query: 324 NPDSLCRDLSILSTTHTIE--RLALFDQFPYTRHME 357 NP +L RDL L T H E + D FP+T H+E Sbjct: 416 NPSTLARDLKYL-TEHGFEAKEVQPVDMFPWTGHVE 450 >gi|160879797|ref|YP_001558765.1| RNA methyltransferase [Clostridium phytofermentans ISDg] gi|160428463|gb|ABX42026.1| RNA methyltransferase, TrmA family [Clostridium phytofermentans ISDg] Length = 554 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 52/191 (27%), Positives = 88/191 (46%), Gaps = 18/191 (9%) Query: 179 IYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLA 236 ++R SF Q N + L + G+ G +++ YCG G LV +++ VL Sbjct: 375 VFRISSKSFYQVNP-VQTERLYQLAIKAAGLTGKERVIDAYCGIGTIGLVASKNAKEVLG 433 Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296 VE+ K +++ A N N + N + EF AM + E + + Sbjct: 434 VEVNKEAIKDAIANAKRNGITNEHFYNSDATEFMLAMAEKGE------------KADVVI 481 Query: 297 VDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTT-HTIERLALFDQFPYT 353 +DPPR+G + + V++ ++YISCNP +L RDL + + ++ D FP+T Sbjct: 482 MDPPRAGSTEQFIDAVESVQPSRVVYISCNPVTLQRDLKYFTKKGYQVKEAWPVDMFPWT 541 Query: 354 RHMECGVLLVR 364 H+E LL + Sbjct: 542 GHVETVCLLYK 552 >gi|126654800|ref|ZP_01726334.1| 23S rRNA methyltransferase/RumA [Cyanothece sp. CCY0110] gi|126623535|gb|EAZ94239.1| 23S rRNA methyltransferase/RumA [Cyanothece sp. CCY0110] Length = 455 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 50/155 (32%), Positives = 78/155 (50%), Gaps = 19/155 (12%) Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271 +L++ YCG G F+L LA+ + + +E K +VE A N N VNNV+ + + + Sbjct: 311 NLIDAYCGVGTFTLPLAQQVTQAIGIESNKKAVEQAINNSKINGVNNVQFYQGT----VE 366 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLC 329 M +F+ DI + +DPPR G D + ++ P I+YISC P +L Sbjct: 367 TMLPFLDFS--PDI---------VVLDPPRKGCDRRVIDTLKEMGSPVIIYISCQPSTLA 415 Query: 330 RDLSILSTT--HTIERLALFDQFPYTRHMECGVLL 362 RDL L +T++ + D FP T H+E L+ Sbjct: 416 RDLQKLCQQDLYTLQWIQPIDFFPQTAHIESMALI 450 >gi|257468239|ref|ZP_05632335.1| tRNA (Uracil-5-) -methyltransferase [Fusobacterium ulcerans ATCC 49185] gi|317062521|ref|ZP_07927006.1| tRNA (Uracil-5-)-methyltransferase [Fusobacterium ulcerans ATCC 49185] gi|313688197|gb|EFS25032.1| tRNA (Uracil-5-)-methyltransferase [Fusobacterium ulcerans ATCC 49185] Length = 287 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 39/150 (26%), Positives = 74/150 (49%), Gaps = 15/150 (10%) Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271 ++++ Y G G +++L++ +V A+E+ + + N + N++ + + ++ Sbjct: 144 NVVDAYSGTGTLAMILSKKAKKVFAIELVQSATNDGIKTAKENKIENIEFINGAVED--- 200 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLC 329 RL ++ + I DPPR G+D++++ V I+YISCNP + Sbjct: 201 ---------RLPELIKKGEKVDAIIFDPPRKGIDESSLLKVAESNIKEIVYISCNPSTFA 251 Query: 330 RDLSILS-TTHTIERLALFDQFPYTRHMEC 358 RD ILS +T+E++ D FP T H E Sbjct: 252 RDAEILSRQGYTLEKVQPVDMFPGTAHTEV 281 >gi|303314227|ref|XP_003067122.1| tRNA -methyltransferase family protein [Coccidioides posadasii C735 delta SOWgp] gi|240106790|gb|EER24977.1| tRNA -methyltransferase family protein [Coccidioides posadasii C735 delta SOWgp] gi|320037383|gb|EFW19320.1| tRNA(m5U54)methyltransferase [Coccidioides posadasii str. Silveira] Length = 578 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 68/279 (24%), Positives = 113/279 (40%), Gaps = 65/279 (23%) Query: 137 RLRDALHARKYQIQLIGRANKTKICLDR-----------------DYVDERLTVAGRTLI 179 R+ D++H K L+ R N +I D+ DY++E+ + + I Sbjct: 309 RVLDSVHQFKAGATLLVRENTRRIPRDKVEENATEKKGVIRIDHPDYIEEKSYITDQKGI 368 Query: 180 ---------YRQIENSFTQPNAGINVHMLEWVLAATKGIQGD----------LLELYCGN 220 +R + +F Q N I ++V D LL+ YCG+ Sbjct: 369 SSEYIDDYLFRNVAGTFFQNNNSILSPFTQYVRERAVPASADSDPSKPKLKYLLDAYCGS 428 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G F++ L+ F L V++A S+E+AR N N + N + + Q Sbjct: 429 GLFTIALSTVFRSSLGVDVAAGSIESARENARLNKLKNTGFAAADAAKLFQ--------- 479 Query: 281 RLKDIDIHSYRFKTIFV-DPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSIL-- 335 D+ +T+ V DPPR G D + + A+ ++Y+SCN + RD+ ++ Sbjct: 480 -----DVPYPPHQTLLVIDPPRKGCDTNFLKQLLAFGPARVVYVSCNVHTQARDVGVMVR 534 Query: 336 ----------STTHTIERLALFDQFPYTRHMECGVLLVR 364 S + IE + FD FP T H+E +L R Sbjct: 535 GDTGDGSGKSSVRYEIESIKGFDFFPQTGHVESVAVLNR 573 >gi|283796600|ref|ZP_06345753.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium sp. M62/1] gi|291076020|gb|EFE13384.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium sp. M62/1] Length = 475 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 58/191 (30%), Positives = 93/191 (48%), Gaps = 19/191 (9%) Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAV 237 YR SF Q N + L G+ GD + +LYCG G SL LA+ +V V Sbjct: 295 YRISPLSFYQVNP-VQTERLYGTALEYAGLTGDETVWDLYCGIGTISLFLAQKAKQVYGV 353 Query: 238 EIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL-KDIDIHSYRFKTIF 296 EI +++ AR N N + NV+ ++E + + E N++ D+ I Sbjct: 354 EIVPQAIDDARGNAEINGMENVEFFVGKAEE---VLPEQYEKNQVYADV---------IV 401 Query: 297 VDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCRDLSILS-TTHTIERLALFDQFPYT 353 VDPPR G D+ + +V+ P ++Y+SC+ +L RD+ L + ++R+ D FP + Sbjct: 402 VDPPRKGCDEKCLETIVRMGPKKVVYVSCDSATLARDVKYLGEKGYEVKRVRCVDMFPQS 461 Query: 354 RHMECGVLLVR 364 H+E LL + Sbjct: 462 GHVETAALLTQ 472 >gi|332521493|ref|ZP_08397947.1| RNA methyltransferase, TrmA family [Lacinutrix algicola 5H-3-7-4] gi|332042892|gb|EGI79091.1| RNA methyltransferase, TrmA family [Lacinutrix algicola 5H-3-7-4] Length = 470 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 62/227 (27%), Positives = 103/227 (45%), Gaps = 34/227 (14%) Query: 153 GRANKTKICLDRDYVDERLTVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWVLA 204 G+AN D Y E + G I+ ++E SF Q N+ + L + Sbjct: 264 GKAN------DTIYDQEVICYKGNDHIFEEMEGLKFKINAKSFYQTNSK-QAYELYKLTR 316 Query: 205 ATKGIQGDLL--ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262 G++GD L +LY G G + +A+ +V+ VE ++ AA+ N N ++NV Sbjct: 317 TFAGLEGDELVYDLYTGTGTIAQFVAKQAKKVVGVEAVPDAITAAKENAQLNGIDNVSF- 375 Query: 263 RMSSKEFTQAMRR--EREFNRLKDIDIHSYRFKTIFVDPPRSGL-DDATVGMVQAYPH-I 318 F M+ +EF I+ H + I DPPR G+ D ++ P + Sbjct: 376 ------FVGDMKNVFNQEF-----IETHG-QPDVIITDPPRDGMHKDVVKQILNIAPQKV 423 Query: 319 LYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 +Y+SCN + RDL ++ + + ++ D FP T H+E VLL ++ Sbjct: 424 VYVSCNSATQARDLQLMDAMYKVTKVQAVDMFPQTFHVENIVLLEKR 470 >gi|325694948|gb|EGD36853.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis SK150] Length = 456 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 51/157 (32%), Positives = 77/157 (49%), Gaps = 19/157 (12%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +L+ Y G G L +A+ +V VE+ +VE ++ N A N + N V ++E Q Sbjct: 308 VLDAYSGIGTIGLSVAKQVKQVYGVEVIPEAVENSQKNAAINGITNASYVCAPAEEAIQ- 366 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD----ATVGMVQAYPHILYISCNPDSL 328 N LK+ + I VDPPR GL + A+V M P I YISCN ++ Sbjct: 367 -------NWLKE----GIQADVILVDPPRKGLTESFIKASVSM--EPPKITYISCNVATM 413 Query: 329 CRDLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364 RD+ + + ++++ D FP T H+E LLVR Sbjct: 414 ARDIKLYQELGYELKKVQPVDLFPQTHHVEAVSLLVR 450 >gi|311067291|ref|YP_003972214.1| putative RNA methyltransferase [Bacillus atrophaeus 1942] gi|310867808|gb|ADP31283.1| putative RNA methyltransferase [Bacillus atrophaeus 1942] Length = 466 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 87/389 (22%), Positives = 163/389 (41%), Gaps = 52/389 (13%) Query: 10 YEQQLAEKVDRLRQMM---LAFQVPNLQIFRS----EPIHYRMRAEFHIWHD-------- 54 Y QQL EK D + Q + F+V ++ I + P +YR +++F I Sbjct: 98 YTQQLREKRDIVIQSLERHTKFKVEDMNIKETIGMDNPWNYRNKSQFQIGRSQSGSIIAG 157 Query: 55 --GDDLYHIMFDQQTKERMRIDYFMPGSL--LINALMIEMMATIRLEPLLRAKLFQIDYL 110 G D ++I+ + K + G + ++ + + + + +R + ++ + Sbjct: 158 LYGMDSHNIVPIKDCKVQHPATNKTTGIVRRILEDFNVSVYNERKRKGDVRTIVTRVGFE 217 Query: 111 TSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDER 170 T + V LI + E ++ L K IQ + A + I + D+ Sbjct: 218 TGEVQ---VVLITSKETLPHKEEIVQAIQKRLPEVKSIIQNVNGAKTSVI-----FGDKT 269 Query: 171 LTVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGN 220 +AG T+I + + +F Q N V + + V A + + G +++ YCG Sbjct: 270 KALAGNTVIQEVLGDVSFELSARAFFQLNPEQTVKLYDEVKKAAQ-LTGKEKVVDAYCGV 328 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G + +A V +++ K S++ A+ N + + N V +++ + +E Sbjct: 329 GTIGMWVADGAKEVRGMDVIKESIDDAKKNAKKHGMTNATYVTGTAEHWLPKWTKE---- 384 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILSTT 338 +R + VDPPR+G D + ++ +Y+SCNP +L +DL LS Sbjct: 385 --------GFRPDVVIVDPPRTGCDTTFLDTIKKVKPKRFVYVSCNPSTLAKDLQALSKD 436 Query: 339 HTIERLALFDQFPYTRHMECGVLLVRKPS 367 + +E + D FP T H+E LV K S Sbjct: 437 YRVEYIQPVDMFPQTAHVEAVAQLVLKSS 465 >gi|157107434|ref|XP_001649776.1| RNA m5u methyltransferase [Aedes aegypti] gi|108884062|gb|EAT48287.1| RNA m5u methyltransferase [Aedes aegypti] Length = 625 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 42/169 (24%), Positives = 85/169 (50%), Gaps = 20/169 (11%) Query: 210 QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269 Q +L++ CG G L A+H +VL VE+ ++E A+YN N ++N K+ ++ + Sbjct: 429 QTSVLDICCGTGTIGLCFAKHCKQVLGVELIPQAIEDAKYNAELNKIDNCKLYAGNADDL 488 Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV---QAYPHILYISCNPD 326 ++ +++ +I + VDPPR+GL ++ + + ++Y+SC+P+ Sbjct: 489 ITSL--------IRNANIQAGENLVAIVDPPRAGLHVRSITQLRNARGLNRLIYVSCSPN 540 Query: 327 SLCRDL---------SILSTTHTIERLALFDQFPYTRHMECGVLLVRKP 366 S ++ ++ T +++ D FP+T H+E +L R+P Sbjct: 541 SAVKNWVDLMRPCSKAMRGTPFVLKKAIPVDLFPHTPHVELVLLFEREP 589 >gi|299771548|ref|YP_003733574.1| 23S rRNA 5-methyluridine methyltransferase [Acinetobacter sp. DR1] gi|298701636|gb|ADI92201.1| 23S rRNA 5-methyluridine methyltransferase [Acinetobacter sp. DR1] Length = 463 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 63/215 (29%), Positives = 102/215 (47%), Gaps = 29/215 (13%) Query: 152 IGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG 211 I R + K L Y ER V + ++ FTQ NA +N M++ + G Sbjct: 256 IHRIDDEKGALRLHYALERFNV---NFAFSPLD--FTQVNATVNEQMVQLACELLQLQPG 310 Query: 212 D-LLELYCGNGNFSLVLAR---HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267 + +L+L+CG GNFSL LAR +V+ VE ++ V+ A N N + + + Sbjct: 311 EKVLDLFCGLGNFSLPLARCVGESGQVVGVEGSEEMVQRATANAKCNSL-------VQAT 363 Query: 268 EFTQAMRREREFNRLKDIDIHSYR---FKTIFVDPPRSGLDDATVGMVQ-AYPHILYISC 323 F+Q + KD HS+ F + +DPPR+G + + I+Y+SC Sbjct: 364 FFSQDL--------TKDFSHHSWANQGFDALLIDPPRAGAYEIMQYVSNFGAKRIVYVSC 415 Query: 324 NPDSLCRDLSIL-STTHTIERLALFDQFPYTRHME 357 NP +L RD +L + +++ A+ D F +T H+E Sbjct: 416 NPATLARDAGVLVQYGYQLKKAAVMDMFTHTEHVE 450 >gi|262280996|ref|ZP_06058779.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Acinetobacter calcoaceticus RUH2202] gi|262257896|gb|EEY76631.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Acinetobacter calcoaceticus RUH2202] Length = 463 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 55/180 (30%), Positives = 90/180 (50%), Gaps = 24/180 (13%) Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLAR---HFDRVLAVEIAKP 242 FTQ NA +N M++ + G+ +L+L+CG GNFSL LAR +V+ VE ++ Sbjct: 286 FTQVNATVNEQMVQLACELLQLQSGEKVLDLFCGLGNFSLPLARCVGESGQVVGVEGSEE 345 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDP 299 V+ A N N + + + F+Q + KD HS+ F + +DP Sbjct: 346 MVQRATANAKCNSL-------VQATFFSQDL--------TKDFSHHSWANQGFDALLIDP 390 Query: 300 PRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHME 357 PR+G + + I+Y+SCNP +L RD +L + +++ A+ D F +T H+E Sbjct: 391 PRAGAYEIMQYVSNFGAKRIVYVSCNPATLARDAGVLVQYGYQLKKAAVMDMFTHTEHVE 450 >gi|119174350|ref|XP_001239536.1| hypothetical protein CIMG_09157 [Coccidioides immitis RS] Length = 531 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 69/279 (24%), Positives = 113/279 (40%), Gaps = 65/279 (23%) Query: 137 RLRDALHARKYQIQLIGRANKTKICLDR-----------------DYVDERLTVAGRTLI 179 R+ D+LH K L+ R N +I D+ DY++E+ + + I Sbjct: 262 RVLDSLHQFKAGATLLVRENTRRIPRDKIEENATEKKDVIRIDHPDYIEEKSYITDQKGI 321 Query: 180 ---------YRQIENSFTQPNAGINVHMLEWVLAATKGIQGD----------LLELYCGN 220 +R + +F Q N I ++V D LL+ YCG+ Sbjct: 322 SSEYIDDYLFRNVAGTFFQNNNSILSPFTQYVRERALPASADSDPSKPKLKYLLDAYCGS 381 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G F++ L+ F L V++A S+E+AR N N + N + + Q Sbjct: 382 GLFTIALSTVFRSSLGVDVAAGSIESARENARLNKLKNTGFAAADAAKLFQ--------- 432 Query: 281 RLKDIDIHSYRFKTIFV-DPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSIL-- 335 D+ +T+ V DPPR G D + + A+ ++Y+SCN + RD+ ++ Sbjct: 433 -----DVPYPPDQTLLVIDPPRKGCDTNFLKQLLAFGPARVVYVSCNVHTQARDVGVMVR 487 Query: 336 ----------STTHTIERLALFDQFPYTRHMECGVLLVR 364 S + IE + FD FP T H+E +L R Sbjct: 488 GDTGDGSGKSSVRYEIESIKGFDFFPQTGHVESVAVLNR 526 >gi|15674161|ref|NP_268336.1| hypothetical protein L37880 [Lactococcus lactis subsp. lactis Il1403] gi|50401786|sp|Q9CDP0|YWFF_LACLA RecName: Full=Uncharacterized RNA methyltransferase ywfF gi|12725241|gb|AAK06277.1|AE006446_9 hypothetical protein L37880 [Lactococcus lactis subsp. lactis Il1403] Length = 513 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 49/173 (28%), Positives = 80/173 (46%), Gaps = 14/173 (8%) Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAAN 254 NV E V A +++ YCG G +A+ V ++I S+ AR N Sbjct: 316 NVLYGEAVKALNPKKDDRVIDAYCGVGTIGFAVAKKVKSVHGMDITPESIFDARENAKRL 375 Query: 255 HVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA 314 + N E +A R +N+ +R + VDPPR+GLDDA + + Sbjct: 376 GLKNCHY------EIGKAERIIPNWNK------SGHRATAMIVDPPRTGLDDALLETITK 423 Query: 315 YP--HILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 +P ++Y+SCN +L +DL +L+ + +E + D FP+T E V L ++ Sbjct: 424 FPPEKMVYVSCNVSTLAKDLVVLANFYKVEYIQSVDMFPHTARTEAVVKLTKR 476 >gi|295092515|emb|CBK78622.1| 23S rRNA m(5)U-1939 methyltransferase [Clostridium cf. saccharolyticum K10] Length = 475 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 58/191 (30%), Positives = 93/191 (48%), Gaps = 19/191 (9%) Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAV 237 YR SF Q N + L G+ GD + +LYCG G SL LA+ +V V Sbjct: 295 YRISPLSFYQVNP-VQTERLYGTALEYAGLTGDETVWDLYCGIGTISLFLAQKAKQVYGV 353 Query: 238 EIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL-KDIDIHSYRFKTIF 296 EI +++ AR N N + NV+ ++E + + E N++ D+ I Sbjct: 354 EIVPQAIDDARGNAEINGMENVEFFVGKAEE---VLPEQYEKNQVYADV---------IV 401 Query: 297 VDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCRDLSILS-TTHTIERLALFDQFPYT 353 VDPPR G D+ + +V+ P ++Y+SC+ +L RD+ L + ++R+ D FP + Sbjct: 402 VDPPRKGCDEKCLETIVRMGPKKVVYVSCDSATLARDVKYLGEKGYEVKRVRCVDMFPQS 461 Query: 354 RHMECGVLLVR 364 H+E LL + Sbjct: 462 GHVETAALLTQ 472 >gi|295133700|ref|YP_003584376.1| tRNA (uracil-5-)-methyltransferase [Zunongwangia profunda SM-A87] gi|294981715|gb|ADF52180.1| tRNA (uracil-5-)-methyltransferase [Zunongwangia profunda SM-A87] Length = 469 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 61/216 (28%), Positives = 96/216 (44%), Gaps = 26/216 (12%) Query: 163 DRDYVDERLTVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGDLL 214 D Y E + GR I+ ++E SF Q N+ + L + G++G+ L Sbjct: 267 DTIYDQEVICYKGRDHIFEEMEGLTFKINAKSFYQTNSA-QAYELYKITREFAGLKGEEL 325 Query: 215 --ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE-FTQ 271 +LY G G + +A++ V+ VE ++ A N N + N K K+ FTQ Sbjct: 326 VYDLYTGTGTIAQFVAKNAKEVIGVEAVPEAISDAIENAKRNGITNTKFFAGDMKKVFTQ 385 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL-DDATVGMVQAYPH-ILYISCNPDSLC 329 I+ H + I DPPR G+ D ++ P I+Y+SCN + Sbjct: 386 NF-----------INKHGHP-DVIITDPPRDGMHKDVVAQIINILPKKIVYVSCNSATQA 433 Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 RDL++L + + ++ D FP T H+E V L RK Sbjct: 434 RDLALLDEYYKVTKVQPVDMFPQTFHVENVVCLERK 469 >gi|18311096|ref|NP_563030.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium perfringens str. 13] gi|168212849|ref|ZP_02638474.1| 23S rRNA -methyltransferase RumA [Clostridium perfringens CPE str. F4969] gi|50401771|sp|Q8XIK5|Y2114_CLOPE RecName: Full=Uncharacterized RNA methyltransferase CPE2114 gi|18145779|dbj|BAB81820.1| RNA methyltransferase-like protein [Clostridium perfringens str. 13] gi|170715477|gb|EDT27659.1| 23S rRNA -methyltransferase RumA [Clostridium perfringens CPE str. F4969] Length = 451 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 47/156 (30%), Positives = 75/156 (48%), Gaps = 18/156 (11%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + +LYCG G + A +V+ +E+ + + AA N N +NN + E + Sbjct: 311 VFDLYCGTGTIGQIAAGKASKVIGIELIEEAAMAANENAKLNGLNNCNFIAGDVAEVIKT 370 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330 ++ + + I +DPPRSG+ + V + P I+Y+SCNP +L Sbjct: 371 VKDKPDI---------------IILDPPRSGVHPKALDYVIKFNAPQIIYVSCNPKTLVT 415 Query: 331 DLSILSTT-HTIERLALFDQFPYTRHMECGVLLVRK 365 DL +L T + IE+ L D FP T H+E V L +K Sbjct: 416 DLKVLETKGYEIEKTLLMDMFPNTPHVETVVKLNKK 451 >gi|329767656|ref|ZP_08259176.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Gemella haemolysans M341] gi|328839083|gb|EGF88669.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Gemella haemolysans M341] Length = 451 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 58/219 (26%), Positives = 96/219 (43%), Gaps = 25/219 (11%) Query: 160 ICLDRDYV---DERLTVAGRTLIYRQI--------ENSFTQPNAGINVHMLEWVLAATKG 208 I D+D++ E LT+ G I +I SF Q N + + V+ Sbjct: 245 ITNDKDHLVMGTESLTLYGSDYIVEKIGEIKYELSAKSFFQLNPPATKKLYDKVVEFAAL 304 Query: 209 IQGDL-LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267 + D+ L+ +CG G ++R+ V V+I +++ A N+ N++ N V + Sbjct: 305 KETDVVLDAFCGVGTIGQYVSRNCKEVYGVDIIPAAIKDANDNVKLNNLTNCTYVAGDAN 364 Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA-YPHILYISCNPD 326 + +++ F VDPPR GL ++ I+Y+SCNP Sbjct: 365 KIVPRWKKK------------GINFDVAIVDPPRVGLGPLAKNLLAVDAKKIVYVSCNPS 412 Query: 327 SLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 +L RDL +L+ + I R+ D FP T +E V L+RK Sbjct: 413 TLARDLKVLTRKYRIRRIQPVDMFPGTAAVEAVVELIRK 451 >gi|94990944|ref|YP_599044.1| tRNA (Uracil-5-) -methyltransferase [Streptococcus pyogenes MGAS10270] gi|94544452|gb|ABF34500.1| tRNA (Uracil-5-) -methyltransferase [Streptococcus pyogenes MGAS10270] Length = 451 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 86/382 (22%), Positives = 156/382 (40%), Gaps = 46/382 (12%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFR-------SEPIHYRMRAEFHIWHDGDDLYHIM 62 Y +QL K D +RQ + F+ + F +P HYR + +F + G + + Sbjct: 89 YPKQLDFKDDVIRQALKKFKPTGYEQFEIRPTLGMKKPDHYRAKLQFQLRSFGGTVKAGL 148 Query: 63 FDQQTKERMRIDYFMPGSLLINALM---IEMMATIRLEPLLRAKLFQIDYL----TSQSD 115 F Q + + ID + L ++ +++ +L K+ I + SD Sbjct: 149 FSQGSHRLVPIDNCLVQDQLTQDIINKITQLVDKYKLPIYNERKIAGIRTIMVRKAQASD 208 Query: 116 QAIVTLIYHRL---------LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY 166 Q + ++ + L A+ + ++ ++ +I ++T+I ++ Sbjct: 209 QVQIIVVSSKEVRLANFIGELTKAFPQVKTVALNSNRSKSSEI----YGDETEILWGQEA 264 Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAG-INVHMLEWVLAATKGIQGDLLELYCGNGNFSL 225 + E + G L R +F Q N V E V A G + +++ YCG G+ Sbjct: 265 IHEEVLDYGFALSPR----AFYQLNPQQTEVLYGEVVKALDVGSKDHIIDAYCGVGSIGF 320 Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285 A V ++I ++E A+ N A +N + +A + E + Sbjct: 321 AFAGKVKSVRGMDIIPEAIEDAQKNAKAMGFDNA---------YYEAGKAEDIIPKWYK- 370 Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTTHTIER 343 YR I VDPPR+GLDD + + Y ++Y+SCN +L RDL L+ + + Sbjct: 371 --QGYRADAIIVDPPRTGLDDKLLKTILHYQPKQMVYVSCNTSTLARDLVQLTKVYDVHY 428 Query: 344 LALFDQFPYTRHMECGVLLVRK 365 + D FP+T E V L ++ Sbjct: 429 IQSVDMFPHTARTEAVVKLQKR 450 >gi|160889893|ref|ZP_02070896.1| hypothetical protein BACUNI_02324 [Bacteroides uniformis ATCC 8492] gi|156860885|gb|EDO54316.1| hypothetical protein BACUNI_02324 [Bacteroides uniformis ATCC 8492] Length = 473 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 57/203 (28%), Positives = 95/203 (46%), Gaps = 24/203 (11%) Query: 172 TVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGDLL--ELYCGNG 221 T G+ I+ ++E SF Q N+ + L V G+ G+ L +LY G G Sbjct: 279 TFKGKDHIFEEMEGLRFKVGPKSFYQTNSE-QAYNLYKVARNFAGLTGNELVYDLYTGTG 337 Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281 + +++H +V+ +E ++E A+ N N + N K+ M + N+ Sbjct: 338 TIANFVSKHARQVIGIEYVPEAIEDAKVNAEINGIKNTLFFAGDMKD----MLTQDFINQ 393 Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ-AYPH-ILYISCNPDSLCRDLSILSTTH 339 D+ I DPPR+G+ V ++ A P I+Y+SCNP + RDL +L + Sbjct: 394 YGRPDV-------IITDPPRAGMHQDVVDVILFAEPKRIVYVSCNPATQARDLQLLDAKY 446 Query: 340 TIERLALFDQFPYTRHMECGVLL 362 ++ + D FP+T H+E VLL Sbjct: 447 KVKAVQPVDMFPHTHHVENVVLL 469 >gi|260890184|ref|ZP_05901447.1| hypothetical protein GCWU000323_01346 [Leptotrichia hofstadii F0254] gi|260860207|gb|EEX74707.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Leptotrichia hofstadii F0254] Length = 476 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 43/156 (27%), Positives = 80/156 (51%), Gaps = 18/156 (11%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS-SKEFTQ 271 +++ + G G +++L+++ +V+ +E + S AA+ N + NV+ V KE + Sbjct: 328 VIDAFSGTGTIAMMLSKNIKKVIGIESVESSTLAAKLTSYENSIQNVEFVNGKVEKELPK 387 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLC 329 ++RE D+ + F DPPR G++++ + V I+YISCNP + Sbjct: 388 ILKRE---------DVGAIVF-----DPPRRGIEESALKSVVQNKIEKIVYISCNPATFA 433 Query: 330 RDLSILSTT-HTIERLALFDQFPYTRHMECGVLLVR 364 RD+ IL+ + + ++ D FP T H+E LL + Sbjct: 434 RDVKILAENGYVLTKVTPVDMFPQTPHIEVVGLLYK 469 >gi|325124548|gb|ADY84071.1| 23S rRNA methyltransferase [Acinetobacter calcoaceticus PHEA-2] Length = 463 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 55/180 (30%), Positives = 90/180 (50%), Gaps = 24/180 (13%) Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLAR---HFDRVLAVEIAKP 242 FTQ NA +N M++ + G+ +L+L+CG GNFSL LAR +V+ VE ++ Sbjct: 286 FTQVNATVNEQMVQLACELLQLQPGEKVLDLFCGLGNFSLPLARCVGESGQVVGVEGSEE 345 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDP 299 V+ A N N + + + F+Q + KD HS+ F + +DP Sbjct: 346 MVQRATANAKCNSL-------VQATFFSQDL--------TKDFSHHSWANQGFDALLIDP 390 Query: 300 PRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHME 357 PR+G + + I+Y+SCNP +L RD +L + +++ A+ D F +T H+E Sbjct: 391 PRAGAYEIMQYVSNFGAKRIVYVSCNPATLARDAGVLVQYGYQLKKAAVMDMFTHTEHVE 450 >gi|55981322|ref|YP_144619.1| RNA methyltransferase [Thermus thermophilus HB8] gi|55772735|dbj|BAD71176.1| probable RNA methyltransferase [Thermus thermophilus HB8] Length = 406 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 53/154 (34%), Positives = 80/154 (51%), Gaps = 24/154 (15%) Query: 214 LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273 LELY G+G FSL+L+ ++ V+AVEI+K +V + NV+ +RM + Sbjct: 270 LELYAGSGLFSLLLSPRYEEVVAVEISKEAVRRGEMDRKRLGAENVRFLRMDA------- 322 Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGL-DDATVGMVQAYP-HILYISCNPDSLCRD 331 R+ L D+ + VDPPR+GL + +++A P ILY+SC+P + RD Sbjct: 323 ---RKAEALGAFDL-------VVVDPPRAGLPPEVRAYLLRARPREILYVSCDPATWARD 372 Query: 332 LSILSTTHTIERLAL---FDQFPYTRHMECGVLL 362 + L RLA +D FP+T H+E LL Sbjct: 373 VGAL--VQGGYRLAFARPYDFFPFTHHVEVLSLL 404 >gi|241668875|ref|ZP_04756453.1| 23S rRNA 5-methyluridine methyltransferase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254877407|ref|ZP_05250117.1| RNA methyltransferase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254843428|gb|EET21842.1| RNA methyltransferase [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 449 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 51/189 (26%), Positives = 95/189 (50%), Gaps = 17/189 (8%) Query: 173 VAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHF 231 VAG + + N FTQ N IN M++ + + + D +++L+CG GNF+L ++++ Sbjct: 266 VAGINIGFEP--NDFTQVNNDINKKMIKRAIDLLEISENDSIIDLFCGLGNFTLPISQYA 323 Query: 232 DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291 V+ VE + V A+ A N+++NVK + ++ + FN ++ Sbjct: 324 KTVIGVEGEQTMVGRAKETAANNNISNVKFY---AANLFESFEDKEWFN--------NFE 372 Query: 292 FKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSILST--THTIERLALFD 348 + + +DPPR+G + + + I+Y+SC+ +L RD IL + + + D Sbjct: 373 YNKMLLDPPRAGAQEVCSNIEKFDVERIVYVSCDTATLARDAGILVNHKGYKLVSAGVMD 432 Query: 349 QFPYTRHME 357 FP+T H+E Sbjct: 433 MFPHTMHVE 441 >gi|224369754|ref|YP_002603918.1| TrmA [Desulfobacterium autotrophicum HRM2] gi|223692471|gb|ACN15754.1| TrmA [Desulfobacterium autotrophicum HRM2] Length = 462 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 57/215 (26%), Positives = 97/215 (45%), Gaps = 24/215 (11%) Query: 152 IGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG 211 I + K+ ++ E+L GR + NSF Q N L +++ + G Sbjct: 265 IATGDYEKLLAGEQFIREKL---GR-FTFEISANSFFQTNTA-GAEQLYSLVSEYADLTG 319 Query: 212 D--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269 + +++LY G G + L+ +V+ +EI + +V A+ N A N ++N + K+ Sbjct: 320 NETVVDLYSGTGTIPIWLSDRAKKVVGIEIVESAVVDAKKNAALNQIDNCEFFVGDIKDV 379 Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDS 327 L +D + +DPPR G+ V V A I+Y+SCNP + Sbjct: 380 ------------LPQLDATC---NVMIIDPPRVGMHKDVVAQVMAIAPKKIVYVSCNPAT 424 Query: 328 LCRDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362 L RDL +L + + ++ D FP+T H+E LL Sbjct: 425 LARDLGMLKERYRVVKVQPVDMFPHTFHIESVALL 459 >gi|46199290|ref|YP_004957.1| putative tRNA (uracil-5-)-methyltransferase [Thermus thermophilus HB27] gi|51316687|sp|Q72IZ3|Y988_THET2 RecName: Full=Uncharacterized RNA methyltransferase TT_C0988 gi|46196915|gb|AAS81330.1| putative tRNA (uracil-5-)-methyltransferase [Thermus thermophilus HB27] Length = 406 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 53/154 (34%), Positives = 80/154 (51%), Gaps = 24/154 (15%) Query: 214 LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273 LELY G+G FSL+L+ ++ V+AVEI+K +V + NV+ +RM + Sbjct: 270 LELYAGSGLFSLLLSPRYEEVVAVEISKEAVRRGEMDRKRLGAENVRFLRMDA------- 322 Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGL-DDATVGMVQAYP-HILYISCNPDSLCRD 331 R+ L D+ + VDPPR+GL + +++A P ILY+SC+P + RD Sbjct: 323 ---RKAEALGAFDL-------VVVDPPRAGLPPEVRAYLLRARPREILYVSCDPATWARD 372 Query: 332 LSILSTTHTIERLAL---FDQFPYTRHMECGVLL 362 + L RLA +D FP+T H+E LL Sbjct: 373 VGAL--VQGGYRLAFARPYDFFPFTHHVEVLSLL 404 >gi|229108092|ref|ZP_04237717.1| Uncharacterized RNA methyltransferase [Bacillus cereus Rock1-15] gi|228675367|gb|EEL30586.1| Uncharacterized RNA methyltransferase [Bacillus cereus Rock1-15] Length = 459 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 44/152 (28%), Positives = 74/152 (48%), Gaps = 14/152 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G L LA V +++ ++ AR N + N K ++++ Sbjct: 317 IVDAYCGVGTIGLWLANDAAEVRGMDVIPEAIADARKNAKRHGFTNTKYEAGKAEQWLPK 376 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCR 330 +E +R I VDPPR+G DD + +++ P ++Y+SCNP SL R Sbjct: 377 WVKE------------GWRPDVIVVDPPRTGCDDKLLETILKVKPKQVVYVSCNPSSLAR 424 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLL 362 D+ L ++ +E + D FP+T H+E V L Sbjct: 425 DVQALMKSYEVEYVQPVDMFPHTAHVENVVRL 456 >gi|314918299|gb|EFS82130.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA [Propionibacterium acnes HL050PA1] Length = 393 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 62/221 (28%), Positives = 98/221 (44%), Gaps = 36/221 (16%) Query: 161 CLDRD-----YVDERLTVAGRTLI-------YRQIENSFTQPNAGINVHMLEWVLAATKG 208 CL D D +L G T+ ++ + F Q + G + + V+ + + Sbjct: 192 CLSEDPEVSVIADGQLVAGGETMTARVGQRRWKVVAGGFWQVHPGAAEALADAVIGSLEP 251 Query: 209 IQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267 QGD L+LYCG G F+ +LA RV VE+++ +V AR N+ Sbjct: 252 QQGDEALDLYCGVGLFAGLLADRGVRVRGVEVSRQAVALARRNVPGG------------- 298 Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNP 325 FT A R ER R+ + + + +DPPR G V + + P I +++C+P Sbjct: 299 RFT-AGRVERVLPRM------APKANIVVLDPPRKGAGKTVVQAVARTSPRAIAHVACDP 351 Query: 326 DSLCRDLSILSTTHTIER-LALFDQFPYTRHMECGVLLVRK 365 +L RDL + + R + FD FP T H+E +L K Sbjct: 352 AALARDLHLFDVNGYLPRSIRAFDVFPMTHHVEAVAILEPK 392 >gi|303233829|ref|ZP_07320482.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Finegoldia magna BVS033A4] gi|302495024|gb|EFL54777.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Finegoldia magna BVS033A4] Length = 496 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 43/155 (27%), Positives = 75/155 (48%), Gaps = 18/155 (11%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +L+LYCG G ++ + + + + VE+ K +V+ A N N++ +++ + S+ Sbjct: 264 ILDLYCGIGTTTMYIG-NGNNTIGVEVVKDAVKDANENKKLNNLESIQFIEEKSENVVGK 322 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCR 330 + +E F I VDPPR G+D+ V + ++YISC+P +L R Sbjct: 323 LTQEH--------------FDIILVDPPRKGMDEKVVDAIIKSTAKKLVYISCDPATLAR 368 Query: 331 DLSILSTTH-TIERLALFDQFPYTRHMECGVLLVR 364 DL L+ + + L D F T H+E LL + Sbjct: 369 DLKALTENGFEVRDVKLVDMFAKTMHVETAALLSK 403 >gi|260592299|ref|ZP_05857757.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella veroralis F0319] gi|260535749|gb|EEX18366.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella veroralis F0319] Length = 474 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 56/192 (29%), Positives = 90/192 (46%), Gaps = 16/192 (8%) Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL--ELYCGNGNFSLVLARHFDRVL 235 L ++ SF Q N H+ V + GD L +LY G G + +A+ +V+ Sbjct: 295 LKFKVSPKSFYQTNTEQAYHLYS-VAREFANLTGDELVYDLYTGTGTIANFIAKKARKVI 353 Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295 +E ++E A+ N N+++N K+ EF I H R I Sbjct: 354 GIEYVPEAIEDAKVNSNVNNIDNTLFYAGDMKDILT-----EEF-----IQKHG-RPDVI 402 Query: 296 FVDPPRSGLDDATVGMV-QAYPH-ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYT 353 DPPR+G+ V ++ A P I+Y+SCNP + RDL++L + + + D FP+T Sbjct: 403 ITDPPRAGMHPDVVNVILGASPKRIVYVSCNPATQARDLALLDADYKVAAVQPVDMFPHT 462 Query: 354 RHMECGVLLVRK 365 H+E VLL ++ Sbjct: 463 PHVENVVLLEKR 474 >gi|317056887|ref|YP_004105354.1| TrmA family RNA methyltransferase [Ruminococcus albus 7] gi|315449156|gb|ADU22720.1| RNA methyltransferase, TrmA family [Ruminococcus albus 7] Length = 417 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 88/390 (22%), Positives = 158/390 (40%), Gaps = 48/390 (12%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDD-LYH 60 G L + Y +QL K ++ +M+ F + EP +YR + + D + Sbjct: 23 GGCQLSESYSEQLTRKQEKAARMLSGFGRVEDIVPMEEPYNYRCKVQTVYATDSSKRIIS 82 Query: 61 IMFDQQTKERMRIDYFM-------PGSLLINALMIEMMATIRLEP--------LLRAKLF 105 ++ +K + +D M P I LM +M R+ P ++R L Sbjct: 83 GVYQSNSKRMVAVDDCMLEAQQAAPIVCTIKKLMKDM----RIRPYDMRTGVGIVRHTLI 138 Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGR----ANKTKIC 161 + + T Q IVT + + + ++ + + I G ++ + Sbjct: 139 RTSFSTGQVMVVIVTASAMLPSKNNFVKALVKAHPEITTVVHNICPDGMPLTLGERSIVL 198 Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA---TKGIQGDLLELYC 218 Y+++ L +R SF Q N + + + A TKG + +++ YC Sbjct: 199 YGDGYIEDELC----GCRFRISPASFYQVNPIQTEKLYSYAVEAAGITKGTK--VIDAYC 252 Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278 G G ++ A + V VE K + A+ N N ++N+ + +F QAM Sbjct: 253 GTGTIGIICAVNGADVTGVESNKHACRDAKVNAGLNGLDNISFYNEDAGKFMQAM----- 307 Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG--MVQAYPHILYISCNPDSLCRDLSILS 336 +R + D+ + +DPPR+G +G + A I+Y+SC ++L RDL IL+ Sbjct: 308 ASRGESCDV-------LIMDPPRAGASSEFIGCALKLAPKRIVYVSCKIETLERDLRILT 360 Query: 337 T-THTIERLALFDQFPYTRHMECGVLLVRK 365 + + D FP+T +E V L RK Sbjct: 361 KGGYKAVNIQPVDMFPHTMGIETVVCLERK 390 >gi|47092904|ref|ZP_00230686.1| RNA methyltransferase, TrmA family [Listeria monocytogenes str. 4b H7858] gi|255521018|ref|ZP_05388255.1| hypothetical RNA methyltransferase [Listeria monocytogenes FSL J1-175] gi|47018730|gb|EAL09481.1| RNA methyltransferase, TrmA family [Listeria monocytogenes str. 4b H7858] Length = 453 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 45/153 (29%), Positives = 75/153 (49%), Gaps = 15/153 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G+ SL LA+ V VEI +++ AR N N + N ++E A Sbjct: 310 VIDAYCGIGSISLCLAKKAKHVYGVEIVDQAIQDARANAELNELANTTFETGKAEEVIPA 369 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330 + + D+ + VDPPR G D+ + + A ++Y+SCNP +L R Sbjct: 370 WYKA---GIVADV---------LVVDPPRKGCDEKLLETILAMKPKKVVYVSCNPGTLAR 417 Query: 331 DLSILS-TTHTIERLALFDQFPYTRHMECGVLL 362 D+ IL+ + +++ D FP T H+E +L Sbjct: 418 DMKILTDGGYVAKKVQPVDMFPMTTHIEAVTVL 450 >gi|312128413|ref|YP_003993287.1| RNA methyltransferase, TrmA family [Caldicellulosiruptor hydrothermalis 108] gi|311778432|gb|ADQ07918.1| RNA methyltransferase, TrmA family [Caldicellulosiruptor hydrothermalis 108] Length = 451 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 57/209 (27%), Positives = 101/209 (48%), Gaps = 24/209 (11%) Query: 168 DERLTVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYC 218 DE + + G + I +I N SF Q N+ + V+ + I+ +++ ++Y Sbjct: 252 DEDILIWGSSTIKDKIGNLTFEISPKSFFQVNSVQTEVLYSQVVKYLRNIEAEVVFDIYS 311 Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278 G G S+ +A +V A+EI + +VE A+ + N ++N++ + + E E Sbjct: 312 GIGTISMFIAPFCKKVYAIEIVEDAVEDAKKSSKNNSISNIEFICGCA---------EIE 362 Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL- 335 +L I + + +DPPRSG + + + +I+Y+SCNP +L RD +IL Sbjct: 363 IPKLLKSGIIP---QAVILDPPRSGCEKELLESLIEHKISNIIYVSCNPSTLARDANILY 419 Query: 336 STTHTIERLALFDQFPYTRHMECGVLLVR 364 S + I + D FP T H+EC L + Sbjct: 420 SGGYEILEVQPVDMFPQTFHVECVALFKK 448 >gi|284929759|ref|YP_003422281.1| 23S rRNA m(5)U-1939 methyltransferase [cyanobacterium UCYN-A] gi|284810203|gb|ADB95900.1| 23S rRNA m(5)U-1939 methyltransferase [cyanobacterium UCYN-A] Length = 448 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 40/122 (32%), Positives = 65/122 (53%), Gaps = 17/122 (13%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G F+L LA+ + +EI+ S+E A+ N N++NNV+ + + K+ Sbjct: 310 IVDAYCGIGTFTLPLAKRISHAIGIEISHDSIEQAKANAELNNINNVEFYQGAVKDILPT 369 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCR 330 + N DI + +DPPR G DD+ + ++ P I+YISC P +L R Sbjct: 370 L------NIFPDI---------VLLDPPRKGCDDSVIETLREICPPLIIYISCQPSTLAR 414 Query: 331 DL 332 DL Sbjct: 415 DL 416 >gi|238753463|ref|ZP_04614826.1| 23S rRNA (uracil-5-)-methyltransferase rumB [Yersinia ruckeri ATCC 29473] gi|238708416|gb|EEQ00771.1| 23S rRNA (uracil-5-)-methyltransferase rumB [Yersinia ruckeri ATCC 29473] Length = 363 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 52/184 (28%), Positives = 83/184 (45%), Gaps = 19/184 (10%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 SF Q N + + +G+ G + +L+CG G F L A R+ +EI+ + Sbjct: 192 QSFFQTNPQVAAALYATARDWVRGLNIGSMWDLFCGVGGFGLHCATTETRLTGIEISAEA 251 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 + AR + + V + S F E E L + V+PPR G Sbjct: 252 IACARQSAEKLGLKQVSFAALDSTHFATG---EAEVPEL------------VLVNPPRRG 296 Query: 304 LDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVL 361 + + A P ILY SC+ +++ +D++ L + I+R+ LFD FP+T H E L Sbjct: 297 ISAELCCYLSQMAPPFILYSSCHAETMAQDIAALPD-YRIQRVQLFDMFPHTSHYEVLTL 355 Query: 362 LVRK 365 LVR+ Sbjct: 356 LVRR 359 >gi|209559750|ref|YP_002286222.1| RNA methyltransferase, TrmA family [Streptococcus pyogenes NZ131] gi|209540951|gb|ACI61527.1| RNA methyltransferase, TrmA family [Streptococcus pyogenes NZ131] Length = 451 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 86/382 (22%), Positives = 156/382 (40%), Gaps = 46/382 (12%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFR-------SEPIHYRMRAEFHIWHDGDDLYHIM 62 Y +QL K D +RQ + F+ + F +P HYR + +F + G + + Sbjct: 89 YPKQLDFKDDVIRQALKKFKPTGYEQFEIRPTLGMKKPDHYRAKLQFQLRSFGGTVKAGL 148 Query: 63 FDQQTKERMRIDYFMPGSLLINALM---IEMMATIRLEPLLRAKLFQIDYL----TSQSD 115 F Q + + ID + L ++ +++ +L K+ I + SD Sbjct: 149 FSQGSHRLVPIDNCLVQDQLTQDIINKITQLVDKYKLPIYNERKIAGIRTIMVRKAQASD 208 Query: 116 QAIVTLIYHRL---------LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY 166 Q + ++ + L A+ + ++ ++ +I ++T+I ++ Sbjct: 209 QVQIIVVSSKEVRLANFIGELTKAFPQVKTVALNSNRSKSSEI----YGDETEILWGQEA 264 Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAG-INVHMLEWVLAATKGIQGDLLELYCGNGNFSL 225 + E + G L R +F Q N V E V A G + +++ YCG G+ Sbjct: 265 IHEEVLDYGFALSPR----AFYQLNPQQTEVLYGEVVKALDVGSKDHIIDAYCGVGSIGF 320 Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285 A V ++I ++E A+ N A +N + +A + E + Sbjct: 321 AFAGKVKSVRGMDIIPEAIEDAQKNAKAMGFDNA---------YYEAGKAEDIIPKWYK- 370 Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTTHTIER 343 YR I VDPPR+GLDD + + Y ++Y+SCN +L RDL L+ + + Sbjct: 371 --QGYRADAIIVDPPRTGLDDKLLKTILHYQPKQMVYVSCNTSTLARDLVQLTKVYDVHY 428 Query: 344 LALFDQFPYTRHMECGVLLVRK 365 + D FP+T E V L ++ Sbjct: 429 IQSVDMFPHTARTEAVVKLQKR 450 >gi|167394809|ref|XP_001741107.1| RNA m5u methyltransferase [Entamoeba dispar SAW760] gi|165894444|gb|EDR22431.1| RNA m5u methyltransferase, putative [Entamoeba dispar SAW760] Length = 479 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 62/216 (28%), Positives = 102/216 (47%), Gaps = 28/216 (12%) Query: 156 NKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNA-GINV---HMLEWVLAATKGIQG 211 NK +I DY+ E L L ++ SF Q N+ G V + E++ I Sbjct: 280 NKMEILYGNDYITEELL----GLHFKITPMSFFQTNSLGAEVLYQTVREYITTTKCDI-- 333 Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271 + +LYCG G + +L+ +++ VE+ ++ AA+ N N + N EF Sbjct: 334 -IFDLYCGTGTITQLLSPICKKIIGVELNPDAIHAAKLNAELNKLTNC--------EFRT 384 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLC 329 A E ++L++ R + I +DPPR+G+ + + Y I+Y+SC P +L Sbjct: 385 A-DVNNELDQLQE-----NRPELIVLDPPRTGIHPTALSKIIKYGAQTIIYVSCMPTTLV 438 Query: 330 RDLSILS-TTHTIERLALFDQFPYTRHMECGVLLVR 364 RDL IL + ++ + L D FP T H+E LL + Sbjct: 439 RDLIILEQNGYKVKNITLVDMFPNTPHIETVCLLKK 474 >gi|156402171|ref|XP_001639464.1| predicted protein [Nematostella vectensis] gi|156226593|gb|EDO47401.1| predicted protein [Nematostella vectensis] Length = 711 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 56/196 (28%), Positives = 98/196 (50%), Gaps = 28/196 (14%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 N+F Q N+ M+ +++ G Q + LL++ CG G+ L LA++ +V+ VE+ + Sbjct: 513 NAFFQVNSKAAEKMIH-IISRWMGEQKETTLLDICCGTGSIGLCLAKYVSKVIGVEVIQS 571 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKE-FT-QAMRREREFNRLKDIDIHSYRFKTIFVDPP 300 +VE A+ N N + N + V +++ FT ++M+R R F + I +DPP Sbjct: 572 AVEDAKQNAIMNGITNAEYVCGKAEDVFTYKSMKRLRRFTQCIGI-----------MDPP 620 Query: 301 RSGLDDATVGMVQAY---PHILYISCNPD-------SLCRDLS--ILSTTHTIERLALFD 348 R+G+ + + ++ Y ++Y+SC PD LCR S + S + D Sbjct: 621 RAGVHKSVIDAIRKYDKLDKLIYVSCAPDHAIPNLLDLCRPTSKRVKSVPFRLVSAVPVD 680 Query: 349 QFPYTRHMECGVLLVR 364 FP+T+H E +L R Sbjct: 681 LFPHTKHCELLMLFQR 696 >gi|160876396|ref|YP_001555712.1| 23S rRNA 5-methyluridine methyltransferase [Shewanella baltica OS195] gi|226725388|sp|A9KYI1|RUMA_SHEB9 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|160861918|gb|ABX50452.1| RNA methyltransferase, TrmA family [Shewanella baltica OS195] gi|315268586|gb|ADT95439.1| RNA methyltransferase, TrmA family [Shewanella baltica OS678] Length = 450 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 53/186 (28%), Positives = 88/186 (47%), Gaps = 26/186 (13%) Query: 185 NSFTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240 +F Q N IN M ++W+ A +L+L+CG GNFSL LA+ V+ VE Sbjct: 279 GNFVQVNGQINKAMVAQAMDWLAPAP---DERILDLFCGMGNFSLPLAKMGADVIGVEGV 335 Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY--RFKTIFVD 298 V AR N AN+++ + + D+ + + + + +D Sbjct: 336 AEMVTQARVNAKANNLDKLTFYHG---------------DLSADLSLEPWMGKIDKLLLD 380 Query: 299 PPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDLSI-LSTTHTIERLALFDQFPYTRHM 356 P R+G ++ + + P ++Y+SCNP SL RD ++ L + +++L L D FP T H+ Sbjct: 381 PARAGAFESLQWLKKMKPRKVVYVSCNPASLARDSAVLLERGYRLQQLGLIDMFPQTHHI 440 Query: 357 ECGVLL 362 E L Sbjct: 441 EAMALF 446 >gi|46907981|ref|YP_014370.1| RNA methyltransferase [Listeria monocytogenes serotype 4b str. F2365] gi|226224354|ref|YP_002758461.1| hypothetical RNA methyltransferase [Listeria monocytogenes Clip81459] gi|254992256|ref|ZP_05274446.1| hypothetical RNA methyltransferase [Listeria monocytogenes FSL J2-064] gi|51316673|sp|Q71YR7|Y1776_LISMF RecName: Full=Uncharacterized RNA methyltransferase LMOf2365_1776 gi|46881251|gb|AAT04547.1| RNA methyltransferase, TrmA family [Listeria monocytogenes serotype 4b str. F2365] gi|225876816|emb|CAS05525.1| Putative hypothetical RNA methyltransferase [Listeria monocytogenes serotype 4b str. CLIP 80459] Length = 453 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 45/153 (29%), Positives = 75/153 (49%), Gaps = 15/153 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G+ SL LA+ V VEI +++ AR N N + N ++E A Sbjct: 310 VIDAYCGIGSISLCLAKKAKHVYGVEIVDQAIQDARANAELNELANTTFETGKAEEVIPA 369 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330 + + D+ + VDPPR G D+ + + A ++Y+SCNP +L R Sbjct: 370 WYKA---GIVADV---------LVVDPPRKGCDEKLLETILAMKPKKVVYVSCNPGTLAR 417 Query: 331 DLSILS-TTHTIERLALFDQFPYTRHMECGVLL 362 D+ IL+ + +++ D FP T H+E +L Sbjct: 418 DMKILTDGGYVAKKVQPVDMFPMTTHIEAVTVL 450 >gi|332994403|gb|AEF04458.1| RNA methyltransferase, TrmA family protein [Alteromonas sp. SN2] Length = 473 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 50/184 (27%), Positives = 88/184 (47%), Gaps = 15/184 (8%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 N F Q NA +N M+ L+ G+ + + + G GNF+L +A V AVE Sbjct: 300 NDFVQVNAEVNTKMVAQALSWLAPKAGERIADWFSGLGNFTLPIANSGATVSAVEGVAEM 359 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 V+ A+ N + NV +++ + E+ ++ + F + +DP R G Sbjct: 360 VQRAKSNALEQGITNVDWMQLD-------LADEKSVDK-----ALAGGFDKVLLDPSREG 407 Query: 304 LDDATVGMVQAYPH-ILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVL 361 +V+A P+ I+Y+SCNP++ RD +L + +++ + + FP+T HME L Sbjct: 408 ALTVCHALVRATPNTIVYVSCNPNTFSRDARVLIDGGYQMQKAGVVEMFPFTHHMETMAL 467 Query: 362 LVRK 365 R+ Sbjct: 468 FTRQ 471 >gi|332362548|gb|EGJ40348.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis SK1056] Length = 465 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 49/156 (31%), Positives = 78/156 (50%), Gaps = 15/156 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +L+ Y G G L +A+ +V VE+ +V+ +R N A N + N V ++E Q Sbjct: 321 VLDAYSGIGTIGLSVAKQVKQVYGVEVIPEAVKNSRKNAAINGITNASYVCAPAEEAIQ- 379 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCR 330 N LK+ + I VDPPR GL ++ + V P I YISCN ++ R Sbjct: 380 -------NWLKE----GIQADVILVDPPRKGLTESFIKASVSMEPKKITYISCNVATMAR 428 Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVRK 365 D+ + + ++++ D FP T H+EC LLV++ Sbjct: 429 DIKLYQELGYELKKVQPVDLFPQTHHVECVNLLVKR 464 >gi|254932803|ref|ZP_05266162.1| RNA methyltransferase [Listeria monocytogenes HPB2262] gi|293584356|gb|EFF96388.1| RNA methyltransferase [Listeria monocytogenes HPB2262] gi|332312191|gb|EGJ25286.1| hypothetical protein LMOSA_26720 [Listeria monocytogenes str. Scott A] Length = 453 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 45/153 (29%), Positives = 75/153 (49%), Gaps = 15/153 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G+ SL LA+ V VEI +++ AR N N + N ++E A Sbjct: 310 VIDAYCGIGSISLCLAKKAKHVYGVEIVDQAIQDARANAELNELANTTFETGKAEEVIPA 369 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330 + + D+ + VDPPR G D+ + + A ++Y+SCNP +L R Sbjct: 370 WYKA---GIVADV---------LVVDPPRKGCDEKLLETILAMKPKKVVYVSCNPGTLAR 417 Query: 331 DLSILS-TTHTIERLALFDQFPYTRHMECGVLL 362 D+ IL+ + +++ D FP T H+E +L Sbjct: 418 DMKILTDGGYVAKKVQPVDMFPMTTHIEAVTVL 450 >gi|293610392|ref|ZP_06692693.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292827624|gb|EFF85988.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 463 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 55/180 (30%), Positives = 90/180 (50%), Gaps = 24/180 (13%) Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLAR---HFDRVLAVEIAKP 242 FTQ NA +N M++ + G+ +L+L+CG GNFSL LAR +V+ VE ++ Sbjct: 286 FTQVNATVNEQMVQLACELLQLQPGEKVLDLFCGLGNFSLPLARCVGESGQVVGVEGSEE 345 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDP 299 V+ A N N + + + F+Q + KD HS+ F + +DP Sbjct: 346 MVQRATANAECNSL-------VQATFFSQDL--------TKDFSHHSWANQGFDALLIDP 390 Query: 300 PRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHME 357 PR+G + + I+Y+SCNP +L RD +L + +++ A+ D F +T H+E Sbjct: 391 PRAGAYEIMQYVSNFGAKRIVYVSCNPATLARDAGVLVQYGYQLKKAAVMDMFTHTEHVE 450 >gi|217972409|ref|YP_002357160.1| 23S rRNA 5-methyluridine methyltransferase [Shewanella baltica OS223] gi|254766921|sp|B8E8S1|RUMA_SHEB2 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|217497544|gb|ACK45737.1| RNA methyltransferase, TrmA family [Shewanella baltica OS223] Length = 450 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 53/186 (28%), Positives = 88/186 (47%), Gaps = 26/186 (13%) Query: 185 NSFTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240 +F Q N IN M ++W+ A +L+L+CG GNFSL LA+ V+ VE Sbjct: 279 GNFVQVNGQINKAMVAQAMDWLAPAP---DERILDLFCGMGNFSLPLAKMGADVIGVEGV 335 Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY--RFKTIFVD 298 V AR N AN+++ + + D+ + + + + +D Sbjct: 336 AEMVTQARVNAKANNLDKLTFYHG---------------DLSADLSLEPWMGKIDKLLLD 380 Query: 299 PPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDLSI-LSTTHTIERLALFDQFPYTRHM 356 P R+G ++ + + P ++Y+SCNP SL RD ++ L + +++L L D FP T H+ Sbjct: 381 PARAGAFESLQWLKKMKPRKVVYVSCNPASLARDSAVLLERGYRLQQLGLIDMFPQTHHI 440 Query: 357 ECGVLL 362 E L Sbjct: 441 EAMALF 446 >gi|89890519|ref|ZP_01202029.1| RNA methyltransferase [Flavobacteria bacterium BBFL7] gi|89517434|gb|EAS20091.1| RNA methyltransferase [Flavobacteria bacterium BBFL7] Length = 485 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 78/313 (24%), Positives = 139/313 (44%), Gaps = 62/313 (19%) Query: 69 ERMRIDYFMP--GSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL 126 E +I+YF P + ++ LM+ M +T E ++ + F+ D ++A ++L+ H Sbjct: 212 EAEQIEYFNPREKTGVLRTLMLRMSST--GEIMVVIQFFKED------EKARISLLEH-- 261 Query: 127 LDDAWRECAIRLRDALHARKYQIQLIGRANKT-----KICLD-RDYVDERLTVAGRTLIY 180 L +++ + + Q + +AN T IC D RD++ E + L + Sbjct: 262 LKNSFPQI----------KSLQYIINEKANDTIYDQEVICYDGRDHIFEEM----EGLQF 307 Query: 181 RQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL--ELYCGNGNFSLVLARHFDRVLAVE 238 + SF Q N+ + + + G+ G+ L +LY G G + +A+ + V+ +E Sbjct: 308 KINAKSFYQTNSKQAFELYK-ITRDFAGLTGEELVYDLYTGTGTIAQFVAKKANHVVGIE 366 Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF------ 292 ++E A+ N A N ++N F MR D+ + F Sbjct: 367 SVPVAIEDAKANAAHNGIDNTTF-------FAGDMR-----------DVFTADFIAEHGA 408 Query: 293 -KTIFVDPPRSGLDDATVG--MVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQ 349 + DPPR G+ V + A P I+Y+SCN + RDL++L+ + + + D Sbjct: 409 PDVVITDPPRDGMHKDVVAQLLALAAPRIVYVSCNSATQARDLALLNEQYKVVKYQPVDM 468 Query: 350 FPYTRHMECGVLL 362 FP T H+E VLL Sbjct: 469 FPQTHHVESVVLL 481 >gi|313113178|ref|ZP_07798804.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Faecalibacterium cf. prausnitzii KLE1255] gi|310624517|gb|EFQ07846.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Faecalibacterium cf. prausnitzii KLE1255] Length = 456 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 47/145 (32%), Positives = 70/145 (48%), Gaps = 12/145 (8%) Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276 YCG G L +A H ++ VEI ++E+A+ N A + R + QA R Sbjct: 314 YCGMGTIGLSMAAHCRELIGVEIVPEAIESAKANAARMGADVAAKSRFFCADAGQAATRL 373 Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCRDLSI 334 DI + +DPPR G D+AT+ +V+ P ++Y+SCNP + RD + Sbjct: 374 AAEGLHPDI---------VMLDPPRKGCDEATLSAVVRMSPRRVVYVSCNPATAARDAAW 424 Query: 335 LS-TTHTIERLALFDQFPYTRHMEC 358 L + E++ D FP TRH EC Sbjct: 425 LEQNGYHAEKVQPVDLFPRTRHCEC 449 >gi|284802195|ref|YP_003414060.1| hypothetical protein LM5578_1951 [Listeria monocytogenes 08-5578] gi|284995337|ref|YP_003417105.1| hypothetical protein LM5923_1902 [Listeria monocytogenes 08-5923] gi|284057757|gb|ADB68698.1| hypothetical protein LM5578_1951 [Listeria monocytogenes 08-5578] gi|284060804|gb|ADB71743.1| hypothetical protein LM5923_1902 [Listeria monocytogenes 08-5923] Length = 453 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 45/153 (29%), Positives = 75/153 (49%), Gaps = 15/153 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G+ SL LA+ V VEI +++ AR N N + N ++E A Sbjct: 310 VIDAYCGIGSISLCLAKKAKHVYGVEIVDQAIQDARANAELNELANTTFETGKAEEVIPA 369 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330 + + D+ + VDPPR G D+ + + A ++Y+SCNP +L R Sbjct: 370 WYKA---GIVADV---------LVVDPPRKGCDEKLLETILAMKPKKVVYVSCNPGTLAR 417 Query: 331 DLSILS-TTHTIERLALFDQFPYTRHMECGVLL 362 D+ IL+ + +++ D FP T H+E +L Sbjct: 418 DMKILTDGGYVAKKVQPVDMFPMTTHIEAVTVL 450 >gi|254826004|ref|ZP_05231005.1| RNA methyltransferase [Listeria monocytogenes FSL J1-194] gi|293595243|gb|EFG03004.1| RNA methyltransferase [Listeria monocytogenes FSL J1-194] Length = 453 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 45/153 (29%), Positives = 75/153 (49%), Gaps = 15/153 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G+ SL LA+ V VEI +++ AR N N + N ++E A Sbjct: 310 VIDAYCGIGSISLCLAKKAKHVYGVEIVDQAIQDARANAELNELANTTFETGKAEEVIPA 369 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330 + + D+ + VDPPR G D+ + + A ++Y+SCNP +L R Sbjct: 370 WYKA---GIVADV---------LVVDPPRKGCDEKLLETILAMKPKKVVYVSCNPGTLAR 417 Query: 331 DLSILS-TTHTIERLALFDQFPYTRHMECGVLL 362 D+ IL+ + +++ D FP T H+E +L Sbjct: 418 DMKILTDGGYVAKKVQPVDMFPMTTHIEAVTVL 450 >gi|16800929|ref|NP_471197.1| hypothetical protein lin1863 [Listeria innocua Clip11262] gi|50401774|sp|Q92AQ7|Y1863_LISIN RecName: Full=Uncharacterized RNA methyltransferase lin1863 gi|16414364|emb|CAC97093.1| lin1863 [Listeria innocua Clip11262] gi|313618389|gb|EFR90415.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria innocua FSL S4-378] Length = 453 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 44/156 (28%), Positives = 74/156 (47%), Gaps = 15/156 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G+ SL LA+ V VEI +++ AR N N++ N ++E Sbjct: 310 VIDAYCGIGSISLCLAKKAKHVYGVEIVDQAIQDARANAELNNLTNTTFETGKAEEVIPQ 369 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330 + + + VDPPR G D+ + + A ++Y+SCNP +L R Sbjct: 370 WYK------------NGIVADVLVVDPPRKGCDETLLETILAMKPKKVVYVSCNPGTLAR 417 Query: 331 DLSILS-TTHTIERLALFDQFPYTRHMECGVLLVRK 365 D+ IL+ + +++ D FP T H+E +L K Sbjct: 418 DMKILTEGGYEAKKVQPVDMFPMTTHIEAVTVLTLK 453 >gi|21910835|ref|NP_665103.1| putative RNA methyltransferase [Streptococcus pyogenes MGAS315] gi|28895474|ref|NP_801824.1| RNA methyltransferase [Streptococcus pyogenes SSI-1] gi|50401596|sp|Q8K6K7|Y1299_STRP3 RecName: Full=Uncharacterized RNA methyltransferase SpyM3_1299/SPs0562 gi|21905040|gb|AAM79906.1| putative RNA methyltransferase [Streptococcus pyogenes MGAS315] gi|28810720|dbj|BAC63657.1| putative RNA methyltransferase [Streptococcus pyogenes SSI-1] Length = 451 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 86/382 (22%), Positives = 156/382 (40%), Gaps = 46/382 (12%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFR-------SEPIHYRMRAEFHIWHDGDDLYHIM 62 Y +QL K D +RQ + F+ + F +P HYR + +F + G + + Sbjct: 89 YPKQLDFKDDVIRQALKKFKPTGYEQFEIRPTLGMKKPDHYRAKLQFQLRSFGGTVKAGL 148 Query: 63 FDQQTKERMRIDYFMPGSLLINALM---IEMMATIRLEPLLRAKLFQIDYL----TSQSD 115 F Q + + ID + L ++ +++ +L K+ I + SD Sbjct: 149 FSQGSHRLVPIDNCLVQDQLTQDIINKITQLVDKYKLPIYNERKIAGIRTIMVRKAQASD 208 Query: 116 QAIVTLIYHRL---------LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY 166 Q + ++ + L A+ + ++ ++ +I ++T+I ++ Sbjct: 209 QVQIIVVSSKEVRLANFIGELTKAFPQVKTVALNSNRSKSSEI----YGDETEILWGQEA 264 Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAG-INVHMLEWVLAATKGIQGDLLELYCGNGNFSL 225 + E + G L R +F Q N V E V A G + +++ YCG G+ Sbjct: 265 IHEEVLDYGFALSPR----AFYQLNPQQTEVLYGEVVKALDVGSKDHIIDAYCGVGSIGF 320 Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285 A V ++I ++E A+ N A +N + +A + E + Sbjct: 321 AFAGKVKSVRGMDIIPEAIEDAQKNAKAMGFDNA---------YYEAGKAEDIIPKWYK- 370 Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTTHTIER 343 YR I VDPPR+GLDD + + Y ++Y+SCN +L RDL L+ + + Sbjct: 371 --QGYRADAIIVDPPRTGLDDKLLKTILHYQPKQMVYVSCNTSTLARDLVQLTKVYDVHY 428 Query: 344 LALFDQFPYTRHMECGVLLVRK 365 + D FP+T E V L ++ Sbjct: 429 IQSVDMFPHTARTEAVVKLQKR 450 >gi|332664986|ref|YP_004447774.1| RNA methyltransferase, TrmA family [Haliscomenobacter hydrossis DSM 1100] gi|332333800|gb|AEE50901.1| RNA methyltransferase, TrmA family [Haliscomenobacter hydrossis DSM 1100] Length = 470 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 54/203 (26%), Positives = 95/203 (46%), Gaps = 20/203 (9%) Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNA--GINVHMLEWVLAATKGIQGDLLELYCGNG 221 + Y +E+L + +R SF Q N G N++ + A +G + ++ +LY G G Sbjct: 279 KGYAEEQLG----HVRFRIGPKSFFQTNTRQGENLYDVVTRFANLQGHE-NVYDLYTGIG 333 Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281 + L +A+ +V+ +E +++ A+ N N V NVK + Sbjct: 334 SIGLYVAKDCKQVVGIEEVAAAIDDAKINAEVNGVENVKFYVGDVRAILTT--------- 384 Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTTH 339 + + + DPPR+G+ + + M+ P I+Y+SCNP + RDL LST + Sbjct: 385 --EFAAQHGKPDLLITDPPRAGMHEDVINMLLELEAPRIVYVSCNPGTQARDLGRLSTKY 442 Query: 340 TIERLALFDQFPYTRHMECGVLL 362 + ++ D FP+T H+E LL Sbjct: 443 QVLKVQPVDMFPHTHHIESVALL 465 >gi|304410178|ref|ZP_07391797.1| RNA methyltransferase, TrmA family [Shewanella baltica OS183] gi|307302111|ref|ZP_07581869.1| RNA methyltransferase, TrmA family [Shewanella baltica BA175] gi|304351587|gb|EFM15986.1| RNA methyltransferase, TrmA family [Shewanella baltica OS183] gi|306914149|gb|EFN44570.1| RNA methyltransferase, TrmA family [Shewanella baltica BA175] Length = 450 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 53/186 (28%), Positives = 88/186 (47%), Gaps = 26/186 (13%) Query: 185 NSFTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240 +F Q N IN M ++W+ A +L+L+CG GNFSL LA+ V+ VE Sbjct: 279 GNFVQVNGQINKAMVAQAMDWLAPAP---DERILDLFCGMGNFSLPLAKMGADVIGVEGV 335 Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY--RFKTIFVD 298 V AR N AN+++ + + D+ + + + + +D Sbjct: 336 AEMVTQARVNAKANNLDKLTFYHG---------------DLSADLSLEPWMGKIDKLLLD 380 Query: 299 PPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDLSI-LSTTHTIERLALFDQFPYTRHM 356 P R+G ++ + + P ++Y+SCNP SL RD ++ L + +++L L D FP T H+ Sbjct: 381 PARAGAFESLQWLKKMKPRKVVYVSCNPASLARDSAVLLERGYRLQQLGLIDMFPQTHHI 440 Query: 357 ECGVLL 362 E L Sbjct: 441 EAMALF 446 >gi|261879348|ref|ZP_06005775.1| TrmA family RNA methyltransferase [Prevotella bergensis DSM 17361] gi|270333911|gb|EFA44697.1| TrmA family RNA methyltransferase [Prevotella bergensis DSM 17361] Length = 489 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 60/219 (27%), Positives = 97/219 (44%), Gaps = 36/219 (16%) Query: 171 LTVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWV----LAATKGIQGD------ 212 +T G IY +E+ SF Q N H+ V + GD Sbjct: 281 ITYQGTDCIYETMEDLKFKVGPKSFYQTNTDQAYHLYSVVRNMCFKGSDSGDGDESGTER 340 Query: 213 ---LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269 + +LY G G + +A+ +V+ +E ++E A+ N N + N + F Sbjct: 341 RPLIYDLYTGTGTIANFVAKKASQVIGIEFVPEAIEDAQVNSRINGIENTQF-------F 393 Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFV-DPPRSGLDDATVGMV-QAYPH-ILYISCNPD 326 M+ N L D I + I + DPPR+G+ + V ++ A P I+Y+SCNP Sbjct: 394 AGDMK-----NVLTDDFISEHGCPDIIITDPPRAGMHEDVVRVILNAAPACIVYVSCNPA 448 Query: 327 SLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 + RDL++L + +E + D FP+T H+E V L R+ Sbjct: 449 TQARDLALLDQDYRVEEVQPVDMFPHTPHVENVVKLTRR 487 >gi|254853661|ref|ZP_05243009.1| RNA methyltransferase [Listeria monocytogenes FSL R2-503] gi|300765947|ref|ZP_07075919.1| TrmA family RNA methyltransferase [Listeria monocytogenes FSL N1-017] gi|258607040|gb|EEW19648.1| RNA methyltransferase [Listeria monocytogenes FSL R2-503] gi|300513333|gb|EFK40408.1| TrmA family RNA methyltransferase [Listeria monocytogenes FSL N1-017] Length = 453 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 45/153 (29%), Positives = 75/153 (49%), Gaps = 15/153 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G+ SL LA+ V VEI +++ AR N N + N ++E A Sbjct: 310 VIDAYCGIGSISLCLAKKAKHVYGVEIVDQAIQDARANAELNELANTTFETGKAEEVIPA 369 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330 + + D+ + VDPPR G D+ + + A ++Y+SCNP +L R Sbjct: 370 WYKA---GIVADV---------LVVDPPRKGCDEKLLETILAMKPKKVVYVSCNPGTLAR 417 Query: 331 DLSILS-TTHTIERLALFDQFPYTRHMECGVLL 362 D+ IL+ + +++ D FP T H+E +L Sbjct: 418 DMKILTDGGYVAKKVQPVDMFPMTTHIEAVTVL 450 >gi|225386438|ref|ZP_03756202.1| hypothetical protein CLOSTASPAR_00185 [Clostridium asparagiforme DSM 15981] gi|225047456|gb|EEG57702.1| hypothetical protein CLOSTASPAR_00185 [Clostridium asparagiforme DSM 15981] Length = 506 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 62/195 (31%), Positives = 94/195 (48%), Gaps = 26/195 (13%) Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 SF Q N V + L G+ G+ + +LYCG G SL LA+ +V VEI + Sbjct: 326 SFYQVNPAQTVKLYGTALEYA-GLTGEETVWDLYCGIGTISLFLAQKAKKVYGVEIVPQA 384 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 +E AR N N + NV+ ++E REF ++ I++ I VDPPR G Sbjct: 385 IEDARRNAKINGIENVEFFVGKAEEVLP-----REF---EEKQIYA---DVIVVDPPRKG 433 Query: 304 LDDATVG-MVQAYPH-ILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHME--- 357 D+ + +V+ P ++Y+SC+ +L RD+ L +ER+ D F + H+E Sbjct: 434 CDEVCLDTIVKMGPKRVVYVSCDSATLGRDVKYLGERGFVVERVRGCDMFGGSGHVETVI 493 Query: 358 ----CGVLLVRKPSG 368 CG +VRK G Sbjct: 494 MMQNCG--MVRKSRG 506 >gi|317047525|ref|YP_004115173.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Pantoea sp. At-9b] gi|316949142|gb|ADU68617.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Pantoea sp. At-9b] Length = 374 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 53/187 (28%), Positives = 85/187 (45%), Gaps = 25/187 (13%) Query: 185 NSFTQPNAGINVHML----EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240 SF Q N + + +WV A G+ + +L+CG G F L A ++ +EI Sbjct: 207 QSFFQTNPQVAASLYATARDWV--AQLGV-SSMWDLFCGVGGFGLHCASAEMQLTGIEIN 263 Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300 ++ AR + + NV + S +F A + E + V+PP Sbjct: 264 AEAIACARQSAQQLGLENVSFAALDSTQFATARDQVPEL---------------VLVNPP 308 Query: 301 RSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMEC 358 R G+ + A +ILY SCNP S+ +D++ LS + + R+ LFD FP+T H E Sbjct: 309 RRGIGTELCAYLSQMAPAYILYSSCNPHSMAQDIARLS-AYDVSRVQLFDMFPHTAHFEV 367 Query: 359 GVLLVRK 365 LL ++ Sbjct: 368 LTLLTKR 374 >gi|208779007|ref|ZP_03246353.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Francisella novicida FTG] gi|208744807|gb|EDZ91105.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Francisella novicida FTG] Length = 449 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 48/177 (27%), Positives = 88/177 (49%), Gaps = 15/177 (8%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 N FTQ N IN M++ + + D +++L+CG GNF+L +++H V+ VE Sbjct: 276 NDFTQVNNDINKKMIQRAIELLDISENDSIIDLFCGLGNFTLPISQHAKTVIGVEGEPTM 335 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 V+ A+ N++ NV + ++ + FN ++ + + +DPPR+G Sbjct: 336 VKRAKETADNNNITNVNFY---AANLFESFEDKEWFN--------NFEYNKMLLDPPRAG 384 Query: 304 LDDATVGMVQ-AYPHILYISCNPDSLCRDLSILSTTHTIERLA--LFDQFPYTRHME 357 + + + I+Y+SC+ +L RD IL T + ++ + D FP+T H+E Sbjct: 385 AQEVCNNIEKFNVKRIVYVSCDTATLARDAGILVNTKGYKLISAGVMDMFPHTMHVE 441 >gi|71904022|ref|YP_280825.1| tRNA (uracil-5-)-methyltransferase [Streptococcus pyogenes MGAS6180] gi|71803117|gb|AAX72470.1| tRNA (uracil-5-)-methyltransferase [Streptococcus pyogenes MGAS6180] Length = 451 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 86/382 (22%), Positives = 156/382 (40%), Gaps = 46/382 (12%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFR-------SEPIHYRMRAEFHIWHDGDDLYHIM 62 Y +QL K D +RQ + F+ + F +P HYR + +F + G + + Sbjct: 89 YPKQLDFKDDVIRQALKKFKPTGYEQFEIRPTLGMKKPDHYRAKLQFQLRSFGGTVKAGL 148 Query: 63 FDQQTKERMRIDYFMPGSLLINALM---IEMMATIRLEPLLRAKLFQIDYL----TSQSD 115 F Q + + ID + L ++ +++ +L K+ I + SD Sbjct: 149 FSQGSYRLVPIDNCLVQDQLTQDIINKITQLVDKYKLPIYNERKIAGIRTIMVRKAQASD 208 Query: 116 QAIVTLIYHRL---------LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY 166 Q + ++ + L A+ + ++ ++ +I ++T+I ++ Sbjct: 209 QVQIIVVSSKEVRLANFIGELTKAFPQVKTVALNSNRSKSSEI----YGDETEILWGQEA 264 Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAG-INVHMLEWVLAATKGIQGDLLELYCGNGNFSL 225 + E + G L R +F Q N V E V A G + +++ YCG G+ Sbjct: 265 IHEEVLDYGFALSPR----AFYQLNPQQTEVLYGEVVKALDVGSKDHIIDAYCGVGSIGF 320 Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285 A V ++I ++E A+ N A +N + +A + E + Sbjct: 321 AFAGKVKSVRGMDIIPEAIEDAQKNAKAMGFDNA---------YYEAGKAEDIIPKWYK- 370 Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTTHTIER 343 YR I VDPPR+GLDD + + Y ++Y+SCN +L RDL L+ + + Sbjct: 371 --QGYRADAIIVDPPRTGLDDKLLKTILHYQPKQMVYVSCNTSTLARDLVQLTKVYDVHY 428 Query: 344 LALFDQFPYTRHMECGVLLVRK 365 + D FP+T E V L ++ Sbjct: 429 IQSVDMFPHTARTEAVVKLQKR 450 >gi|312863381|ref|ZP_07723619.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus vestibularis F0396] gi|311100917|gb|EFQ59122.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus vestibularis F0396] Length = 453 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 50/155 (32%), Positives = 76/155 (49%), Gaps = 15/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ Y G G L A+ V VE+ + +VE A+ N N + N V S++ A Sbjct: 308 VIDAYSGIGTIGLSFAKQVKEVYGVEVIETAVEDAKKNAERNGITNAHYVADSAE---NA 364 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330 M + + DI I VDPPR GL ++ + V P I Y+SCNP ++ R Sbjct: 365 MAKWSKDGIKPDI---------IIVDPPRKGLTESFIKASVAMQPEKITYVSCNPATMAR 415 Query: 331 DL-SILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D+ S + ++++ D FP T H+EC VLL R Sbjct: 416 DIKSYQELGYELKKVQPVDLFPQTHHVECVVLLQR 450 >gi|270261139|ref|ZP_06189412.1| 23S rRNA uracil-5-methyltransferase [Serratia odorifera 4Rx13] gi|270044623|gb|EFA17714.1| 23S rRNA uracil-5-methyltransferase [Serratia odorifera 4Rx13] Length = 375 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 58/186 (31%), Positives = 87/186 (46%), Gaps = 25/186 (13%) Query: 185 NSFTQPNAGINVHML----EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240 SF Q N + + +WV A GI + +L+CG G F L A+ R+ +EI+ Sbjct: 208 QSFFQTNPQVAAKLYATARDWVRAL--GID-SMWDLFCGVGGFGLHCAQPETRLTGIEIS 264 Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300 ++ AR + + +V + S F A E +L + V+PP Sbjct: 265 AEAIACARQSAETLGLQHVSFQALDSTRFATA---EGSVPQL------------VLVNPP 309 Query: 301 RSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMEC 358 R G+ A + A +ILY SCN +S+ +D+ L + IER+ LFD FP+T H E Sbjct: 310 RRGIGQALCDYLNQMAPGYILYSSCNAESMAKDIEGLPD-YRIERVQLFDMFPHTAHYEV 368 Query: 359 GVLLVR 364 LLVR Sbjct: 369 LTLLVR 374 >gi|254428372|ref|ZP_05042079.1| 23S rRNA (uracil-5-)-methyltransferase [Alcanivorax sp. DG881] gi|196194541|gb|EDX89500.1| 23S rRNA (uracil-5-)-methyltransferase [Alcanivorax sp. DG881] Length = 445 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 53/180 (29%), Positives = 88/180 (48%), Gaps = 27/180 (15%) Query: 187 FTQPNAGINVHMLEWVLAATK-GIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 FTQ NA IN M+ L + +L+L+CG GNF++ A+ +V+ VE+++ VE Sbjct: 273 FTQVNAEINRKMVPLALDLLDISPEHTVLDLFCGLGNFTIPAAKRAGKVVGVEVSQAMVE 332 Query: 246 AARYNIAANHVNNVKI--VRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 N N + N++ +S QA R+ + I +DPPR+G Sbjct: 333 RGYENARRNGLENLEFHAWDLSQDVSGQAWARQ--------------AYDRILIDPPRTG 378 Query: 304 LDDATVGMVQAYP-----HILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHME 357 + MV+ P I+Y+SCNP +L RD +++ + ++ + D FP+T H+E Sbjct: 379 ----ALEMVKLMPRLGASRIVYVSCNPATLARDAGELMALGYRLKAAGVMDMFPHTTHVE 434 >gi|313623370|gb|EFR93595.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria innocua FSL J1-023] Length = 453 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 44/156 (28%), Positives = 74/156 (47%), Gaps = 15/156 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G+ SL LA+ V VEI +++ AR N N++ N ++E Sbjct: 310 VIDAYCGIGSISLCLAKKAKHVYGVEIVDQAIQDARANAELNNLTNTTFETGKAEEVIPQ 369 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330 + + + VDPPR G D+ + + A ++Y+SCNP +L R Sbjct: 370 WYK------------NGIVADVLVVDPPRKGCDETLLETILAMKPKKVVYVSCNPGTLAR 417 Query: 331 DLSILS-TTHTIERLALFDQFPYTRHMECGVLLVRK 365 D+ IL+ + +++ D FP T H+E +L K Sbjct: 418 DMKILTEGGYEAKKVQPVDMFPMTTHIEAVTVLTLK 453 >gi|312867279|ref|ZP_07727489.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus parasanguinis F0405] gi|311097408|gb|EFQ55642.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus parasanguinis F0405] Length = 450 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 45/155 (29%), Positives = 71/155 (45%), Gaps = 14/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L++ YCG G A V ++I ++E A+YN N +++E Sbjct: 308 LIDAYCGVGTIGFAFANRVKSVRGMDIIPEAIEDAKYNAKRMGFENTHYEAGTAEEIIPR 367 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330 +E YR + VDPPR+GL + ++Q P ++Y+SCN +L R Sbjct: 368 WYQE------------GYRANAVIVDPPRTGLGTKLIETLLQYAPEKMVYVSCNVSTLAR 415 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 DL L+ + +E + D FP+T E V LV+K Sbjct: 416 DLVALTKVYQVEYIQSVDMFPHTARTEAVVKLVKK 450 >gi|19746533|ref|NP_607669.1| RNA methyltransferase [Streptococcus pyogenes MGAS8232] gi|50401605|sp|Q8P017|Y1615_STRP8 RecName: Full=Uncharacterized RNA methyltransferase spyM18_1615 gi|19748743|gb|AAL98168.1| putative RNA methyltransferase [Streptococcus pyogenes MGAS8232] Length = 451 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 88/382 (23%), Positives = 155/382 (40%), Gaps = 46/382 (12%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFR-------SEPIHYRMRAEFHIWHDGDDLYHIM 62 Y +QL K D +RQ + F+ + F +P HYR + +F + G + + Sbjct: 89 YPKQLDFKDDVIRQALKKFKPTGYEQFEIRPTLGMKKPDHYRAKLQFQLRSFGGTVKAGL 148 Query: 63 FDQQTKERMRIDYFMPGSLLINALM---IEMMATIRLEPLLRAKLFQIDYL----TSQSD 115 F Q + + ID + L ++ +++ +L K+ I + SD Sbjct: 149 FSQGSHRLVPIDNCLVQDQLTQDIINKITQLVDKYKLPIYNERKIAGIRTIMVRKAQASD 208 Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIG-RANKTKICLDRDYVDERLTVA 174 Q + ++ + + A R L Q++ + +N +K Y DE + Sbjct: 209 QVQIIVVSSKEVRLA------RFIGELTKAFPQVKTVALNSNCSK--SSEIYGDETEILW 260 Query: 175 GRTLIYRQI--------ENSFTQPNAG-INVHMLEWVLAATKGIQGDLLELYCGNGNFSL 225 G+ I+ ++ +F Q N V E V A G + +++ YCG G+ Sbjct: 261 GQEAIHEEVLDYGFALSPRTFYQLNPQQTEVLYGEVVKALDVGSKDHIIDAYCGVGSIGF 320 Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285 A V ++I ++E A+ N A +N + +A + E + Sbjct: 321 AFAGKVKSVRGMDIISEAIEDAQKNAKAMGFDNA---------YYEAGKAEDIIPKWYK- 370 Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTTHTIER 343 YR I VDPPR+GLDD + + Y ++Y+SCN +L RDL L+ + + Sbjct: 371 --QGYRADAIIVDPPRTGLDDKLLKTILHYQPKQMVYVSCNTSTLARDLVQLTKVYDVHY 428 Query: 344 LALFDQFPYTRHMECGVLLVRK 365 + D FP+T E V L ++ Sbjct: 429 IQSVDMFPHTARTEAVVKLQKR 450 >gi|225874142|ref|YP_002755601.1| 23S rRNA (uracil-5-)-methyltransferase [Acidobacterium capsulatum ATCC 51196] gi|225793976|gb|ACO34066.1| 23S rRNA (uracil-5-)-methyltransferase [Acidobacterium capsulatum ATCC 51196] Length = 427 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 81/341 (23%), Positives = 132/341 (38%), Gaps = 38/341 (11%) Query: 30 VPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIE 89 +P +Q+ EP YR R H+ L + +E+ + + + ++ Sbjct: 104 LPEIQVIAGEPWGYRNRIRLHVETKPFALGY------RREQSHVTLPVEECRIAAPALVR 157 Query: 90 MMATI--RLEPLLRAKLFQIDYLTSQSDQAIVTLIY--------HRLLDDAWRECAIRLR 139 M + + E L +++ T + + ++ +Y LD W L Sbjct: 158 AMQVLVEQCEAALAGWAREVELFTDDATELLLISVYADAATAKMQERLDALWERLQGALP 217 Query: 140 DALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML 199 +A + + G+ ++ LT L YR +F Q N + M+ Sbjct: 218 EAAGCAAFALP-AGKGFARRVATAGG---PSLTYGAGGLQYRVSAGAFFQVNRFLVDRMV 273 Query: 200 EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259 V A G +LY G G F+ L F+ V AVE A SV R N V Sbjct: 274 AAVCEARAGATA--WDLYAGVGLFAKALVPRFEHVTAVEAAPESVADLRVNAPGARVVAA 331 Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD-DATVGMVQAYP-H 317 + K +A +R+ + + DPPR+GL D T + + P H Sbjct: 332 TTLDFLRKAAQEAGKRKAAPD-------------LVVADPPRAGLGKDVTALLGKIRPRH 378 Query: 318 ILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHME 357 I Y+SC+P +L RDL ++L + + L L D FP T H+E Sbjct: 379 ITYVSCDPATLSRDLFALLQSGYRFRSLHLLDMFPQTFHVE 419 >gi|306826963|ref|ZP_07460262.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus pyogenes ATCC 10782] gi|304430825|gb|EFM33835.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus pyogenes ATCC 10782] Length = 451 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 87/382 (22%), Positives = 156/382 (40%), Gaps = 46/382 (12%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFR-------SEPIHYRMRAEFHIWHDGDDLYHIM 62 Y +QL K D +RQ + F+ + F +P HYR + +F + G + + Sbjct: 89 YPKQLDFKDDVIRQALKKFKPTGYEQFEIRPTLGMKKPDHYRAKLQFQLRSFGGTVKAGL 148 Query: 63 FDQQTKERMRIDYFMPGSLLINALM---IEMMATIRLEPLLRAKLFQIDYL----TSQSD 115 F Q + + ID + L ++ +++ +L K+ I + SD Sbjct: 149 FSQGSHRLVPIDNCLVQDQLTQDIINKITQLVDKYKLPIYNERKIAGIRTIMVRKAQASD 208 Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIG-RANKTKICLDRDYVDERLTVA 174 Q + ++ + + A R L Q++ + +N++K Y DE + Sbjct: 209 QVQIIVVSSKEVRLA------RFIGELTKAFPQVKTVALNSNRSK--SSEIYGDETEILW 260 Query: 175 GRTLIYRQI--------ENSFTQPNAG-INVHMLEWVLAATKGIQGDLLELYCGNGNFSL 225 G+ I+ ++ +F Q N V E V A G + +++ YCG G+ Sbjct: 261 GQEAIHEEVLDYGFALSPRAFYQLNPQQTEVLYGEVVKALDVGSKDHIIDAYCGVGSIGF 320 Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285 A V ++I ++E A+ N + +N + +A + E + Sbjct: 321 AFAGKVKSVRGMDIIPEAIEDAQKNAKSMGFDNA---------YYEAGKAEDIIPKWYK- 370 Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTTHTIER 343 YR I VDPPR+GLDD + + Y ++Y+SCN +L RDL L+ + + Sbjct: 371 --QGYRADAIIVDPPRTGLDDKLLKTILHYQPKQMVYVSCNTSTLARDLVQLTKIYDVHY 428 Query: 344 LALFDQFPYTRHMECGVLLVRK 365 + D FP+T E V L ++ Sbjct: 429 IQSVDMFPHTARTEAVVKLQKR 450 >gi|148242321|ref|YP_001227478.1| putative RNA methyltransferase [Synechococcus sp. RCC307] gi|147850631|emb|CAK28125.1| Hypothetical RNA methyltransferase [Synechococcus sp. RCC307] Length = 455 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 47/155 (30%), Positives = 75/155 (48%), Gaps = 19/155 (12%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L++ YCG G L L + R++ +E ++ S+E A+ N N + + S + Sbjct: 310 LVDAYCGVGTLGLPLIQEGVRLIGIEQSRESIERAQCNALLNGLEDTDFHAGSVE----- 364 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCR 330 RR +EF D+ + +DPPR GLD ++ P + Y+SCNP +L R Sbjct: 365 -RRLQEFLPFTDV---------LLLDPPRKGLDARVCEAIREQPPARMAYVSCNPATLAR 414 Query: 331 DLSILSTTHTIE--RLALFDQFPYTRHMECGVLLV 363 DL++L E ++ FD FP T H+E +L Sbjct: 415 DLALLCADQRFELTKVVPFDFFPQTTHIEAMAILT 449 >gi|228476330|ref|ZP_04061031.1| 23S rRNA-methyltransferase RumA [Staphylococcus hominis SK119] gi|228269613|gb|EEK11119.1| 23S rRNA-methyltransferase RumA [Staphylococcus hominis SK119] Length = 454 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 45/155 (29%), Positives = 72/155 (46%), Gaps = 14/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +L+ YCG G L +A V VEI +++ A+ N NH +N ++E Sbjct: 310 VLDTYCGIGTIGLYMAPVAKHVYGVEIVPSAIQDAKQNALINHFDNTTFECGKAEEVIIE 369 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330 +++ I VDPPR G D + +++ P I+YISCNP + R Sbjct: 370 WKQK------------GIEPDVIMVDPPRKGCDQVFIETLLELAPKRIIYISCNPSTQQR 417 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 D +L+ + ++ + D FP+T H+E L RK Sbjct: 418 DAQLLANLYYLKEITPVDMFPHTTHIETVALFERK 452 >gi|160915760|ref|ZP_02077968.1| hypothetical protein EUBDOL_01775 [Eubacterium dolichum DSM 3991] gi|158432236|gb|EDP10525.1| hypothetical protein EUBDOL_01775 [Eubacterium dolichum DSM 3991] Length = 451 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 46/157 (29%), Positives = 79/157 (50%), Gaps = 16/157 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +L+ YCG G + +A +V+ VE+ K +V+ A N N + N++ + + F Sbjct: 307 VLDAYCGIGTIGMCVASKVKQVIGVELNKDAVKDAIQNAKLNRIRNIRFLCDDAGSFMSQ 366 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCR 330 + + ++ +D+ + +DPPRSG + P ILYISCNP++ R Sbjct: 367 LAKAQQ-----TLDV-------LIMDPPRSGSSQEFLSSAARLRVPKILYISCNPNTQIR 414 Query: 331 DLSILST-THTIE-RLALFDQFPYTRHMECGVLLVRK 365 D+ +L + +E + L D FP+T +E +LVRK Sbjct: 415 DIRMLQKLGYRVEGSMTLVDMFPFTNSIESVCMLVRK 451 >gi|304382443|ref|ZP_07364941.1| 23S rRNA (uracil-5-)-methyltransferase [Prevotella marshii DSM 16973] gi|304336396|gb|EFM02634.1| 23S rRNA (uracil-5-)-methyltransferase [Prevotella marshii DSM 16973] Length = 473 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 56/200 (28%), Positives = 91/200 (45%), Gaps = 24/200 (12%) Query: 175 GRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFSL 225 G+ IY +E+ SF Q N H+ V + +L+ +LY G G + Sbjct: 282 GKDHIYETMEDLRFKVGPKSFYQTNTAQAYHLYSVVRDLARLTGSELVYDLYTGTGTIAN 341 Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE-FTQAMRREREFNRLKD 284 +AR+ RV+ +E ++E A+ N N ++N K T+ E Sbjct: 342 FVARNAGRVIGIEYVPEAIEDAKVNSQINGIDNTLFYAGDMKNILTETFIAE-------- 393 Query: 285 IDIHSYRFKTIFVDPPRSGL-DDATVGMVQAYPH-ILYISCNPDSLCRDLSILSTTHTIE 342 HS R + DPPR+G+ D ++ P I+Y+SCNP + RDL+++ + + Sbjct: 394 ---HS-RPDVVITDPPRAGMHPDVVQTILNTLPQRIVYVSCNPATQARDLALMDVRYKVT 449 Query: 343 RLALFDQFPYTRHMECGVLL 362 + D FP+T H+E VLL Sbjct: 450 VVQPVDMFPHTPHVENVVLL 469 >gi|255009493|ref|ZP_05281619.1| putative RNA methyltransferase [Bacteroides fragilis 3_1_12] Length = 472 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 56/184 (30%), Positives = 89/184 (48%), Gaps = 22/184 (11%) Query: 186 SFTQPNAG--INVHMLEWVLAATKGIQGDLL-ELYCGNGNFSLVLARHFDRVLAVEIAKP 242 SF Q N+G N++ + A G G+L+ +LY G G + ++R +V+ +E Sbjct: 301 SFYQTNSGQAYNLYKVARDFAGLTG--GELVYDLYTGTGTIANFVSRQARQVIGIEYVPE 358 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKE-FTQAMRREREFNRLKDIDIHSY-RFKTIFVDPP 300 ++E A+ N N + N K+ TQ I+ Y R I DPP Sbjct: 359 AIEDAKVNAEINGIENTLFFAGDMKDILTQDF-------------INQYGRPDVIITDPP 405 Query: 301 RSGLDDATVGMVQ-AYPH-ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMEC 358 R+G+ V ++ A P I+Y+SCNP + RDL +L + ++ + D FP+T H+E Sbjct: 406 RAGMHQDVVDVILFAEPKRIVYVSCNPATQARDLQLLDVKYRVKAVQPVDMFPHTHHVEN 465 Query: 359 GVLL 362 VLL Sbjct: 466 VVLL 469 >gi|39996552|ref|NP_952503.1| RNA methyltransferase [Geobacter sulfurreducens PCA] gi|51316711|sp|Q74D67|Y1452_GEOSL RecName: Full=Uncharacterized RNA methyltransferase GSU1452 gi|39983433|gb|AAR34826.1| RNA methyltransferase, TrmA family [Geobacter sulfurreducens PCA] gi|307634847|gb|ADI84291.2| RNA methyltransferase, TrmA family [Geobacter sulfurreducens KN400] Length = 495 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 48/157 (30%), Positives = 73/157 (46%), Gaps = 15/157 (9%) Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271 +++LYCG G +L LA V +E+ + +V A N N ++N + E + Sbjct: 323 SVVDLYCGIGGIALFLAGTAREVHGIEVVEAAVNDAESNARLNRIHNCSFEAGDAAELIE 382 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLC 329 + E E R + ++PPR G D + V A I+Y+SC P +L Sbjct: 383 ELVEEGE------------RLDLVVLNPPRKGCDAGVLNKVAAAGPARIVYVSCAPATLA 430 Query: 330 RDLSILST-THTIERLALFDQFPYTRHMECGVLLVRK 365 RDL IL+ + R+ D FP T H+E LLV+K Sbjct: 431 RDLDILAGLGYATLRVQPVDMFPQTPHVENIALLVKK 467 >gi|115379583|ref|ZP_01466671.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Stigmatella aurantiaca DW4/3-1] gi|310821580|ref|YP_003953938.1| 23S rRNA (Uracil-5-)-methyltransferase RumA [Stigmatella aurantiaca DW4/3-1] gi|115363410|gb|EAU62557.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Stigmatella aurantiaca DW4/3-1] gi|309394652|gb|ADO72111.1| 23S rRNA (Uracil-5-)-methyltransferase RumA [Stigmatella aurantiaca DW4/3-1] Length = 428 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 50/177 (28%), Positives = 84/177 (47%), Gaps = 15/177 (8%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 ++F Q +A NV ++ + A D +LELY GNGNF+ LA VL VE + Sbjct: 258 DAFAQAHAEANVGLVTSAVYALAPRDTDSVLELYSGNGNFTFPLAATAASVLGVESSPVG 317 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 VE A+ + V NV+ ++ +++ Q + E F DPPR+G Sbjct: 318 VELAQRSAREGGVTNVRFIQGDARKVVQGLIGE------------GRTFDLCLADPPRTG 365 Query: 304 LDDATVGM-VQAYPHILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMEC 358 + + + ++Y++C+P SL RD + +++ + L + D FP T H+E Sbjct: 366 APGLALQVSLLGVKRVVYVACDPASLARDAAGLVAAGYRPVALQVVDMFPQTHHVEA 422 >gi|314936049|ref|ZP_07843398.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus hominis subsp. hominis C80] gi|313655866|gb|EFS19609.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus hominis subsp. hominis C80] Length = 454 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 45/155 (29%), Positives = 72/155 (46%), Gaps = 14/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +L+ YCG G L +A V VEI +++ A+ N NH +N ++E Sbjct: 310 VLDTYCGIGTIGLYMAPVAKHVYGVEIVPSAIQDAKQNALINHFDNTTFECGKAEEVIIE 369 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330 +++ I VDPPR G D + +++ P I+YISCNP + R Sbjct: 370 WKQK------------GIEPDVIMVDPPRKGCDQVFIETLLELAPKRIIYISCNPSTQQR 417 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 D +L+ + ++ + D FP+T H+E L RK Sbjct: 418 DAQLLANLYYLKEITPVDMFPHTTHIETVALFERK 452 >gi|290968456|ref|ZP_06559995.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Megasphaera genomosp. type_1 str. 28L] gi|290781452|gb|EFD94041.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Megasphaera genomosp. type_1 str. 28L] Length = 460 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 44/155 (28%), Positives = 79/155 (50%), Gaps = 15/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + ++YCG G +L LA+ +V +EI +++ A N NH+ N + + + Sbjct: 316 VADVYCGTGTITLFLAQKAKQVYGIEIVPSAIKDAIRNARDNHIKNAEFILGDA------ 369 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330 +L ++ + R + I +DPPR+G + + + ++ P ++Y+SCNP +L R Sbjct: 370 ------VYKLPELIKNGVRPQVIVLDPPRAGCGEPVLRAIGRSQPERVVYVSCNPATLAR 423 Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364 DL+ L T + ER+ D F T H+E L+ R Sbjct: 424 DLACLQTYGYKTERVQPVDMFSRTHHVESVALVSR 458 >gi|169346803|ref|ZP_02865754.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium perfringens C str. JGS1495] gi|169297085|gb|EDS79207.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium perfringens C str. JGS1495] Length = 451 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 47/156 (30%), Positives = 75/156 (48%), Gaps = 18/156 (11%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + +LYCG G + A +V+ +E+ + + AA N N +NN + E + Sbjct: 311 VFDLYCGTGTIGQIAAGKASKVIGIELIEEAAMAANENAKLNGLNNCNFIAGDVAEVIKT 370 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330 ++ + + I +DPPRSG+ + V + P I+Y+SCNP +L Sbjct: 371 VKDKPDI---------------IILDPPRSGVHPKALDYVIKFNAPQIIYVSCNPKTLVT 415 Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRK 365 DL +L + + IE+ L D FP T H+E V L RK Sbjct: 416 DLKVLEAKGYEIEKTLLMDMFPNTPHVETVVKLNRK 451 >gi|293365360|ref|ZP_06612077.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus oralis ATCC 35037] gi|291316810|gb|EFE57246.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus oralis ATCC 35037] Length = 451 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 49/161 (30%), Positives = 82/161 (50%), Gaps = 17/161 (10%) Query: 209 IQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266 ++GD +++ Y G G L +A+H V VE+ +VE ++ N + N + N V ++ Sbjct: 302 LKGDDVVIDAYSGIGTIGLSVAKHVKEVYGVEVIPEAVENSQKNASINGITNAHYVCDTA 361 Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV--GMVQAYPHILYISCN 324 + AM+ N LK+ + I VDPPR GL ++ + G I YISCN Sbjct: 362 E---NAMK-----NWLKE----GIQPTAILVDPPRKGLTESFIKAGSQTGADRIAYISCN 409 Query: 325 PDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364 ++ RD+ + + ++++ D FP T H+EC LLV+ Sbjct: 410 VATMARDIKLYQELGYELKKIQPVDLFPQTHHVECVALLVK 450 >gi|307703903|ref|ZP_07640844.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus oralis ATCC 35037] gi|307622738|gb|EFO01734.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus oralis ATCC 35037] Length = 379 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 49/161 (30%), Positives = 82/161 (50%), Gaps = 17/161 (10%) Query: 209 IQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266 ++GD +++ Y G G L +A+H V VE+ +VE ++ N + N + N V ++ Sbjct: 230 LKGDDVVIDAYSGIGTIGLSVAKHVKEVYGVEVIPEAVENSQKNASINGITNAHYVCDTA 289 Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV--GMVQAYPHILYISCN 324 + AM+ N LK+ + I VDPPR GL ++ + G I YISCN Sbjct: 290 E---NAMK-----NWLKE----GIQPTAILVDPPRKGLTESFIKAGSQTGADRIAYISCN 337 Query: 325 PDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364 ++ RD+ + + ++++ D FP T H+EC LLV+ Sbjct: 338 VATMARDIKLYQELGYELKKIQPVDLFPQTHHVECVALLVK 378 >gi|146306765|ref|YP_001187230.1| 23S rRNA 5-methyluridine methyltransferase [Pseudomonas mendocina ymp] gi|145574966|gb|ABP84498.1| 23S rRNA m(5)U-1939 methyltransferase [Pseudomonas mendocina ymp] Length = 450 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 60/191 (31%), Positives = 87/191 (45%), Gaps = 23/191 (12%) Query: 178 LIYRQIENSFTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDR 233 L YR F Q N +N M L+W L+ G + +L+L+CG GNF+L LAR Sbjct: 274 LAYR--PGDFVQVNGPVNEAMVAQALDW-LSVQPGER--VLDLFCGLGNFALPLARQAAE 328 Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293 V+AVE + V A N +N ++N R N L + F Sbjct: 329 VVAVEGVEAMVARAAANARSNGLDNAHFFRADLS------------NPLANETWARGGFA 376 Query: 294 TIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSILS-TTHTIERLALFDQFP 351 + +DPPR G +A GM ++Y+SCNP +L RD + L+ + + R + D F Sbjct: 377 AVLLDPPRDGALEAVRGMSALGARRLVYVSCNPTTLARDAAELAQQGYRLRRAGILDMFA 436 Query: 352 YTRHMECGVLL 362 T H+E L Sbjct: 437 QTAHVEAMALF 447 >gi|24212992|ref|NP_710473.1| tRNA (uracil-5-)-methyltransferase [Leptospira interrogans serovar Lai str. 56601] gi|45656154|ref|YP_000240.1| RNA methyltransferase [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|50401584|sp|Q8F9A3|Y292_LEPIN RecName: Full=Uncharacterized RNA methyltransferase LA_0292 gi|51316691|sp|Q72VP7|Y249_LEPIC RecName: Full=Uncharacterized RNA methyltransferase LIC_10249 gi|24193673|gb|AAN47491.1| tRNA (uracil-5-)-methyltransferase [Leptospira interrogans serovar Lai str. 56601] gi|45599387|gb|AAS68877.1| RNA methyltransferase [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 393 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 44/147 (29%), Positives = 72/147 (48%), Gaps = 16/147 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G SL +A +V+ +E S+ +A AN + NV ++ + +A Sbjct: 254 VVDAYCGIGTISLYIASKSKKVIGLEENSSSIRSAIGASKANGIENVHFIKGKVLDTLRA 313 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCR 330 N D+ + +DPPR GLD T ++ ILY+SCNP++L R Sbjct: 314 A-----LNENSDV---------VVLDPPREGLDAETKSILLNSKVNQILYVSCNPETLLR 359 Query: 331 DLSILSTTHTIERLALFDQFPYTRHME 357 D L+ + E++ D FP+T H+E Sbjct: 360 DAIELTKSFKYEKITPVDLFPHTSHLE 386 >gi|56707825|ref|YP_169721.1| 23S rRNA 5-methyluridine methyltransferase [Francisella tularensis subsp. tularensis SCHU S4] gi|110670296|ref|YP_666853.1| 23S rRNA 5-methyluridine methyltransferase [Francisella tularensis subsp. tularensis FSC198] gi|81597688|sp|Q5NGX1|RUMA_FRATT RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|122970996|sp|Q14IC3|RUMA_FRAT1 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|56604317|emb|CAG45338.1| 23S rRNA (Uracil-5-)-methyltransferase [Francisella tularensis subsp. tularensis SCHU S4] gi|110320629|emb|CAL08721.1| 23S rRNA (Uracil-5-)-methyltransferase [Francisella tularensis subsp. tularensis FSC198] gi|282159001|gb|ADA78392.1| 23S rRNA 5-methyluridine methyltransferase [Francisella tularensis subsp. tularensis NE061598] Length = 449 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 48/177 (27%), Positives = 88/177 (49%), Gaps = 15/177 (8%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 N FTQ N IN M++ + + D +++L+CG GNF+L +++H V+ VE Sbjct: 276 NDFTQVNNDINKKMIKRAIELLDISENDSIIDLFCGLGNFTLPISQHAKTVIGVEGEPTM 335 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 V+ A+ N++ NV + ++ + FN ++ + + +DPPR+G Sbjct: 336 VKRAKETADNNNITNVNFY---AANLFESFEDKEWFN--------NFEYNKMLLDPPRAG 384 Query: 304 LDDATVGMVQ-AYPHILYISCNPDSLCRDLSILSTTHTIERLA--LFDQFPYTRHME 357 + + + I+Y+SC+ +L RD IL T + ++ + D FP+T H+E Sbjct: 385 AQEVCNNIEKFNVKRIVYVSCDTAALARDAGILVNTKGYKLISAGVMDMFPHTMHVE 441 >gi|33152777|ref|NP_874130.1| 23S rRNA 5-methyluridine methyltransferase [Haemophilus ducreyi 35000HP] gi|50401521|sp|Q7VKU9|RUMA_HAEDU RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|33149001|gb|AAP96519.1| 23S rRNA (Uracil-5-)-methyltransferase [Haemophilus ducreyi 35000HP] Length = 442 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 55/185 (29%), Positives = 91/185 (49%), Gaps = 23/185 (12%) Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 F Q N +N M LEW LA T + +L+L+CG GNFSL +A+ V+ VE + Sbjct: 274 FIQVNQPLNQKMVNKALEW-LAITA--EDRILDLFCGIGNFSLPIAQQAGFVVGVEGVEE 330 Query: 243 SVEAARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301 V+ A+ N + +NN+ + + ++ F + FN+ + +DP R Sbjct: 331 MVKQAKINQQTSGLNNIAFYQTNLAESFVDQHWATQPFNK-------------VLLDPAR 377 Query: 302 SGLDDATVGMVQAYPH-ILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHMECG 359 G ++ P I+YISCNP +L RD ++ + I + A+ D FP+T H+E Sbjct: 378 QGALFCLDHLMALTPERIIYISCNPATLMRDAEKLIRHGYKIAKSAVIDMFPHTGHLESI 437 Query: 360 VLLVR 364 + ++ Sbjct: 438 SMFIK 442 >gi|328675743|gb|AEB28418.1| RNA methyltransferase, trmA family [Francisella cf. novicida 3523] Length = 449 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 48/177 (27%), Positives = 87/177 (49%), Gaps = 15/177 (8%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 N FTQ N IN M++ + + D +++L+CG GNF+L +++H V+ VE Sbjct: 276 NDFTQVNNDINRKMIKRAIKLLDISENDSIIDLFCGLGNFTLPISQHAKTVIGVEGEPTM 335 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 V+ A+ N++ NV + ++ + FN ++ + + +DPPR+G Sbjct: 336 VKRAKETADNNNITNVNFY---AANLFESFEDKEWFN--------NFEYNKMLLDPPRAG 384 Query: 304 LDDATVGMVQ-AYPHILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTRHME 357 + + + I+Y+SC+ +L RD IL S + + + D FP+T H+E Sbjct: 385 AQEVCSNIEKFNVKRIVYVSCDTATLARDAGILVKSKGYKLISAGVMDMFPHTMHVE 441 >gi|325696032|gb|EGD37923.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis SK160] Length = 465 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 48/156 (30%), Positives = 77/156 (49%), Gaps = 15/156 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +L+ Y G G L +A+ +V VE+ +VE +R N N + N V ++E Q Sbjct: 321 VLDAYSGIGTIGLSVAKQVKQVYGVEVIPEAVENSRKNAEINDITNASYVCAPAEEAIQ- 379 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCR 330 N LK+ + I VDPPR GL ++ + + P I YISCN ++ R Sbjct: 380 -------NWLKE----GIQADVILVDPPRKGLTESFIKASISMEPKKITYISCNVATMSR 428 Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVRK 365 D+ + + ++++ D FP T H+EC LLV++ Sbjct: 429 DIKLYQELGYELKKVQPVDLFPQTHHVECVSLLVKR 464 >gi|291320650|ref|YP_003515915.1| hypothetical protein MAGa7590 [Mycoplasma agalactiae] gi|290752986|emb|CBH40962.1| Hypothetical RNA methyltransferase [Mycoplasma agalactiae] Length = 446 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 51/158 (32%), Positives = 78/158 (49%), Gaps = 18/158 (11%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +L+ YCG G SL LA+ +V +EI K +V A+ N N ++N EF Sbjct: 296 VLDAYCGIGTISLFLAQKAKKVYGLEIVKEAVINAKENALDNSIHNT--------EFISG 347 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330 + +K ID + + T+ VDPPRSGL + ++ P I YISCNP ++CR Sbjct: 348 -------DVIKTIDSINEKIDTVVVDPPRSGLSSEFLNKIIDIKPEEIGYISCNPHTMCR 400 Query: 331 DLS-ILSTTHTIERLALFDQFPYTRHMECGVLLVRKPS 367 D+ ++ + + L D F T H+E +L K + Sbjct: 401 DIDQLIKAGYELSFLRPCDMFSQTYHIEMVAVLKLKDT 438 >gi|127512133|ref|YP_001093330.1| 23S rRNA 5-methyluridine methyltransferase [Shewanella loihica PV-4] gi|126637428|gb|ABO23071.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Shewanella loihica PV-4] Length = 444 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 56/183 (30%), Positives = 85/183 (46%), Gaps = 20/183 (10%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 +F Q N IN M+ + + G+ +L+L+CG GNF+L LA+ +V+ VE Sbjct: 273 GNFIQVNGEINQQMVTQAIDWLQIQPGERVLDLFCGVGNFTLPLAKAGAQVVGVEGVDAM 332 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY--RFKTIFVDPPR 301 V AR N + V EF + D+ + R + +DP R Sbjct: 333 VAQARVNATMSGVEGA--------EFYHG-------DLSADLSAAPWLGRIDKLLLDPAR 377 Query: 302 SGLDDATVGMVQAYPH-ILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECG 359 +G ++ + + P I+YISCNP SL RD +L+ + + RL L D FP T H+E Sbjct: 378 AGAYESLQWLKKMKPKAIVYISCNPVSLARDCEPLLAQGYQLSRLGLIDMFPQTHHIEAM 437 Query: 360 VLL 362 L Sbjct: 438 ALF 440 >gi|295426431|ref|ZP_06819081.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus amylolyticus DSM 11664] gi|295063799|gb|EFG54757.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus amylolyticus DSM 11664] Length = 461 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 42/153 (27%), Positives = 75/153 (49%), Gaps = 14/153 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L++ Y G G ++ A +V+ +E +VE A++N+ NH+ N + S ++ Sbjct: 318 LIDAYSGVGTLGILAADQVKQVVGIETIPEAVEDAKHNVQINHIKNADYFQGSVEKV--- 374 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330 L ++ + VDPPR+GL + + +++ P +YISCNP +L + Sbjct: 375 ---------LPELQKGGLPIDALIVDPPRTGLAKSLIKTLLRVKPQTFVYISCNPSTLAQ 425 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363 DL +L+ ++ + + D P T EC V LV Sbjct: 426 DLILLTESYDVRLIENVDMLPQTPRCECVVKLV 458 >gi|289435088|ref|YP_003464960.1| RNA methyltransferase [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289171332|emb|CBH27874.1| RNA methyltransferase [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 453 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 45/153 (29%), Positives = 75/153 (49%), Gaps = 15/153 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G+ SL LA+ V VEI +++ AR N N+++N ++E Sbjct: 310 VIDAYCGIGSISLCLAKKAKHVYGVEIVDQAIQDARTNAELNNLSNTTFETGKAEEVIPT 369 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330 + + D+ + VDPPR G D+ + + A ++Y+SCNP +L R Sbjct: 370 WYKA---GIVADV---------LVVDPPRKGCDEKLLQTILAMKPKKVVYVSCNPGTLAR 417 Query: 331 DLSILS-TTHTIERLALFDQFPYTRHMECGVLL 362 D+ ILS + ++ D FP T H+E +L Sbjct: 418 DMKILSDGGYEANQVQPVDMFPMTTHIEAVTVL 450 >gi|254374038|ref|ZP_04989520.1| RNA methyltransferase [Francisella novicida GA99-3548] gi|151571758|gb|EDN37412.1| RNA methyltransferase [Francisella novicida GA99-3548] Length = 449 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 48/177 (27%), Positives = 88/177 (49%), Gaps = 15/177 (8%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 N FTQ N IN M++ + + D +++L+CG GNF+L +++H V+ VE Sbjct: 276 NDFTQVNNDINKKMIKRAIELLDISENDSIIDLFCGLGNFTLPISQHAKTVIGVEGEPTM 335 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 V+ A+ N++ NV + ++ + FN ++ + + +DPPR+G Sbjct: 336 VKRAKETADNNNITNVNFY---AANLFESFEDKEWFN--------NFEYNKMLLDPPRAG 384 Query: 304 LDDATVGMVQ-AYPHILYISCNPDSLCRDLSILSTTHTIERLA--LFDQFPYTRHME 357 + + + I+Y+SC+ +L RD IL T + ++ + D FP+T H+E Sbjct: 385 AQEVCNNIEKFNVKRIVYVSCDTATLARDAGILVNTKGYKLISAGVMDMFPHTMHVE 441 >gi|15605800|ref|NP_213177.1| RNA methyltransferase [Aquifex aeolicus VF5] gi|50401329|sp|O66617|Y257_AQUAE RecName: Full=Uncharacterized RNA methyltransferase aq_257 gi|2982968|gb|AAC06582.1| RNA methyltransferase (TrmA-family) [Aquifex aeolicus VF5] Length = 425 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 58/186 (31%), Positives = 89/186 (47%), Gaps = 18/186 (9%) Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEI 239 YR +SF Q N + L+ VL ++ + L +L+CG G F++ L+ + + + Sbjct: 251 YRVSNDSFFQVNYTLWEDFLKEVLDFSESYKKGL-DLHCGVGFFTIPLSEQGNFIEGADA 309 Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299 +++ A YN N+ +NV + + F RR E L + VDP Sbjct: 310 NPSAIKDAEYNAKINNRDNV--IFEEATAFKHLKRRIGEVINL------------VVVDP 355 Query: 300 PRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHM 356 PRSGL ++ I+YISCNP + RDL IL+ + ++RL L D FP T H+ Sbjct: 356 PRSGLLREERDLLLKNKPDKIVYISCNPTTFARDLKILTKGGYELKRLKLIDNFPQTYHI 415 Query: 357 ECGVLL 362 E LL Sbjct: 416 ESIALL 421 >gi|148264841|ref|YP_001231547.1| RNA methyltransferase [Geobacter uraniireducens Rf4] gi|146398341|gb|ABQ26974.1| 23S rRNA m(5)U-1939 methyltransferase [Geobacter uraniireducens Rf4] Length = 470 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 58/189 (30%), Positives = 89/189 (47%), Gaps = 22/189 (11%) Query: 186 SFTQPNAG----INVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241 SF Q N+G I + EW A G + +L+LYCG G SL LA VL +E+ + Sbjct: 297 SFFQVNSGAARIIYEKVREW--GALTGKE-RVLDLYCGIGGISLFLAGKAREVLGIEVVE 353 Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301 +V A N +NN++ R + + + + RE D+ + ++PPR Sbjct: 354 AAVADAEMNA---QLNNIRNCRFKAGDVARLLGELREEGEKVDL---------VILNPPR 401 Query: 302 SGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMEC 358 G D+ + A I+Y+SC+P +L DL IL+ + + D FP T H+E Sbjct: 402 KGCDEQVLRETAAIGPQKIIYVSCSPQTLSHDLDILAALGYRTTEIQPVDMFPQTPHVED 461 Query: 359 GVLLVRKPS 367 LLV+ S Sbjct: 462 VALLVKMKS 470 >gi|262038379|ref|ZP_06011756.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Leptotrichia goodfellowii F0264] gi|261747597|gb|EEY35059.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Leptotrichia goodfellowii F0264] Length = 466 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 41/156 (26%), Positives = 77/156 (49%), Gaps = 14/156 (8%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ + G G ++ L+ + + +E + SV AA N++ NV+ ++ + Sbjct: 322 VIDAFSGTGTIAMALSSKVKKAIGIESVESSVIAANQTAEENNIKNVEFIKGKVERVLPD 381 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV--GMVQAYPHILYISCNPDSLCR 330 + + +E N + + I DPPR G+D+ + + P I+YISCNP + R Sbjct: 382 VLK-KEGNSV----------EAIIFDPPRRGIDEKALKSSVKNKIPKIVYISCNPSTFAR 430 Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRK 365 D +L +T+++++ D FP H+E LL RK Sbjct: 431 DCKLLMENGYTLKKVSAVDMFPQVNHIEIVGLLERK 466 >gi|95930707|ref|ZP_01313440.1| RNA methyltransferase, TrmA family [Desulfuromonas acetoxidans DSM 684] gi|95133187|gb|EAT14853.1| RNA methyltransferase, TrmA family [Desulfuromonas acetoxidans DSM 684] Length = 467 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 57/185 (30%), Positives = 86/185 (46%), Gaps = 24/185 (12%) Query: 186 SFTQPN----AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241 SF Q N A I + W A G + ++LYCG G ++ LA +V +EI + Sbjct: 291 SFFQVNNRQAARIYAQVQSW---ADLGPKDTAVDLYCGVGGIAMHLATSGAKVTGIEINE 347 Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301 ++ A+ N + N + + + E M+RE K V+PPR Sbjct: 348 DAIFNAKAAAELNELGNCRFIVGDAGEILHDMQRELS------------PLKVAVVNPPR 395 Query: 302 SGLDD---ATVGMVQAYPHILYISCNPDSLCRDLSILSTTH-TIERLALFDQFPYTRHME 357 G + AT+G ++ ++Y+SCNP SL RDL +L+ T+E L D FP T H+E Sbjct: 396 GGCSEEIIATLGQLRPQT-LIYVSCNPYSLGRDLHLLTQQGFTVEELQPVDMFPQTAHVE 454 Query: 358 CGVLL 362 V L Sbjct: 455 SVVRL 459 >gi|325185750|emb|CCA20230.1| tRNA (uracil5)methyltransferase putative [Albugo laibachii Nc14] Length = 798 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 52/176 (29%), Positives = 81/176 (46%), Gaps = 32/176 (18%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L ++ CG G L A+ +V+ +EI K + E A N N + N+ V ++E Sbjct: 633 LYDVCCGTGTIGLCCAKDAGKVIGIEICKAATEDAERNAILNQIKNISFVNDKAEEV--- 689 Query: 273 MRREREFNRLKDIDIHSYRFK-------TIFVDPPRSGLDDATVGMVQAYP---HILYIS 322 +KDI + +++ T+ +DPPR+GL + ++A P I+Y+S Sbjct: 690 ---------MKDILQTATQYEGTQMDSVTVVIDPPRAGLHYKVLRALRACPVVRRIVYVS 740 Query: 323 CNP-DSLCRDLSILSTTHTIE---------RLALFDQFPYTRHMECGVLLVRKPSG 368 CNP SL +D ++L T R A D FP+T H E V+ R SG Sbjct: 741 CNPTQSLIQDSAMLCGPKTSALVGEAFCPVRAAAVDMFPHTPHCEMIVVFERGNSG 796 >gi|224456895|ref|ZP_03665368.1| 23S rRNA 5-methyluridine methyltransferase [Francisella tularensis subsp. tularensis MA00-2987] gi|254370321|ref|ZP_04986326.1| hypothetical protein [Francisella tularensis subsp. tularensis FSC033] gi|254874638|ref|ZP_05247348.1| rumA, 23S rRNA (uracil-5-)-methyltransferase [Francisella tularensis subsp. tularensis MA00-2987] gi|151568564|gb|EDN34218.1| hypothetical protein FTBG_00076 [Francisella tularensis subsp. tularensis FSC033] gi|254840637|gb|EET19073.1| rumA, 23S rRNA (uracil-5-)-methyltransferase [Francisella tularensis subsp. tularensis MA00-2987] Length = 449 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 48/177 (27%), Positives = 88/177 (49%), Gaps = 15/177 (8%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 N FTQ N IN M++ + + D +++L+CG GNF+L +++H V+ VE Sbjct: 276 NDFTQVNNDINKKMIKRAIELLDISENDSIIDLFCGLGNFTLPISQHAKTVIGVEGEPTM 335 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 V+ A+ N++ NV + ++ + FN ++ + + +DPPR+G Sbjct: 336 VKRAKETADNNNITNVNFY---AANLFESFEDKEWFN--------NFEYNKMLLDPPRAG 384 Query: 304 LDDATVGMVQ-AYPHILYISCNPDSLCRDLSILSTTHTIERLA--LFDQFPYTRHME 357 + + + I+Y+SC+ +L RD IL T + ++ + D FP+T H+E Sbjct: 385 AQEVCNNIEKFNVKRIVYVSCDTAALARDAGILVNTKGYKLISAGVMDMFPHTMHVE 441 >gi|89256815|ref|YP_514177.1| 23S rRNA 5-methyluridine methyltransferase [Francisella tularensis subsp. holarctica LVS] gi|115315201|ref|YP_763924.1| 23S rRNA 5-methyluridine methyltransferase [Francisella tularensis subsp. holarctica OSU18] gi|156502981|ref|YP_001429046.1| 23S rRNA 5-methyluridine methyltransferase [Francisella tularensis subsp. holarctica FTNF002-00] gi|167009854|ref|ZP_02274785.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Francisella tularensis subsp. holarctica FSC200] gi|254368098|ref|ZP_04984118.1| 23S rRNA (uracil-5-)-methyltransferase [Francisella tularensis subsp. holarctica 257] gi|290953511|ref|ZP_06558132.1| 23S rRNA 5-methyluridine methyltransferase [Francisella tularensis subsp. holarctica URFT1] gi|295313203|ref|ZP_06803862.1| 23S rRNA 5-methyluridine methyltransferase [Francisella tularensis subsp. holarctica URFT1] gi|122324802|sp|Q0BKU7|RUMA_FRATO RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|122500404|sp|Q2A275|RUMA_FRATH RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|89144646|emb|CAJ79970.1| 23S rRNA (Uracil-5-)-methyltransferase [Francisella tularensis subsp. holarctica LVS] gi|115130100|gb|ABI83287.1| 23S rRNA (uracil-5-)-methyltransferase [Francisella tularensis subsp. holarctica OSU18] gi|134253908|gb|EBA53002.1| 23S rRNA (uracil-5-)-methyltransferase [Francisella tularensis subsp. holarctica 257] gi|156253584|gb|ABU62090.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Francisella tularensis subsp. holarctica FTNF002-00] Length = 449 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 48/177 (27%), Positives = 88/177 (49%), Gaps = 15/177 (8%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 N FTQ N IN M++ + + D +++L+CG GNF+L +++H V+ VE Sbjct: 276 NDFTQVNNDINKKMIKRAIELLDISENDSIIDLFCGLGNFTLPISQHAKTVIGVEGEPTM 335 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 V+ A+ N++ NV + ++ + FN ++ + + +DPPR+G Sbjct: 336 VKRAKETADNNNITNVNFY---AANLFESFEDKEWFN--------NFEYNKMLLDPPRAG 384 Query: 304 LDDATVGMVQ-AYPHILYISCNPDSLCRDLSILSTTHTIERLA--LFDQFPYTRHME 357 + + + I+Y+SC+ +L RD IL T + ++ + D FP+T H+E Sbjct: 385 AQEVCNNIEKFNVKRIVYVSCDTAALARDAGILVNTKGYKLISAGVMDMFPHTMHVE 441 >gi|317124930|ref|YP_004099042.1| 23S rRNA m(5)U-747 methyltransferase [Intrasporangium calvum DSM 43043] gi|315589018|gb|ADU48315.1| 23S rRNA m(5)U-747 methyltransferase [Intrasporangium calvum DSM 43043] Length = 394 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 64/192 (33%), Positives = 90/192 (46%), Gaps = 20/192 (10%) Query: 185 NSFTQPNAGINVHML----EWVLAATKGIQGDLLELYCGNGNFSLVLARHFD----RVLA 236 NSF Q N + + EWV + +L+LYCG G F+L AR RV+ Sbjct: 208 NSFFQTNTEVASALYRQVDEWV---DRVDPAQVLDLYCGVGGFALHAARSGRLGRRRVMG 264 Query: 237 VEIAKPSVEAARYNIAA--NHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294 VE++ +VE+AR + A +++ V S + T A + H+ Sbjct: 265 VEVSPDAVESARRSAAELRRQHSDLGPVCFQSGDATAAGALGGAGSEEARPGAHTL---- 320 Query: 295 IFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPY 352 + V+PPR G+ G ++A H++Y SCN DSL RDL L + E LFD FP Sbjct: 321 VIVNPPRRGIGPDLAGRLEASQVGHVVYSSCNVDSLARDLEALPSFSARE-ARLFDMFPQ 379 Query: 353 TRHMECGVLLVR 364 T H E VLL R Sbjct: 380 TSHHEVAVLLER 391 >gi|326791294|ref|YP_004309115.1| RNA methyltransferase, TrmA family [Clostridium lentocellum DSM 5427] gi|326542058|gb|ADZ83917.1| RNA methyltransferase, TrmA family [Clostridium lentocellum DSM 5427] Length = 451 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 48/156 (30%), Positives = 77/156 (49%), Gaps = 20/156 (12%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + +LYCG G + ++A +V +EI + +++ A+ N NH+ N + A Sbjct: 312 VFDLYCGTGTITQIMATRAKKVYGIEIVEEAIDKAKENAIFNHLTNCHFI---------A 362 Query: 273 MRREREFNRLKDI-DIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLC 329 E ++LK+ DI I +DPPR G+ + + + +LYISC P SL Sbjct: 363 GDVMVEVDQLKETPDI-------IILDPPRDGIHPKAIQKIINFGAKELLYISCKPTSLT 415 Query: 330 RDLSILS-TTHTIERLALFDQFPYTRHMECGVLLVR 364 RDL IL + I+++ D FP T H+E V L + Sbjct: 416 RDLPILKEAGYHIDKVLCVDMFPQTPHVETVVKLSK 451 >gi|254369699|ref|ZP_04985709.1| 23S rRNA (Uracil-5-)-methyltransferase [Francisella tularensis subsp. holarctica FSC022] gi|157122658|gb|EDO66787.1| 23S rRNA (Uracil-5-)-methyltransferase [Francisella tularensis subsp. holarctica FSC022] Length = 449 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 48/177 (27%), Positives = 88/177 (49%), Gaps = 15/177 (8%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 N FTQ N IN M++ + + D +++L+CG GNF+L +++H V+ VE Sbjct: 276 NDFTQVNNDINKKMIKRAIELLDISENDSIIDLFCGLGNFTLPISQHAKTVIGVEGEPTM 335 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 V+ A+ N++ NV + ++ + FN ++ + + +DPPR+G Sbjct: 336 VKRAKETADNNNITNVNFY---AANLFESFEDKEWFN--------NFEYNKMLLDPPRAG 384 Query: 304 LDDATVGMVQ-AYPHILYISCNPDSLCRDLSILSTTHTIERLA--LFDQFPYTRHME 357 + + + I+Y+SC+ +L RD IL T + ++ + D FP+T H+E Sbjct: 385 AQEVCNNIEKFNVKRIVYVSCDTAALARDAGILVNTKDYKLISAGVMDMFPHTMHVE 441 >gi|222153321|ref|YP_002562498.1| RNA methyltransferase [Streptococcus uberis 0140J] gi|222114134|emb|CAR42611.1| putative RNA methyltransferase [Streptococcus uberis 0140J] Length = 453 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 51/189 (26%), Positives = 90/189 (47%), Gaps = 16/189 (8%) Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLARHFDRVLAVE 238 YR SF Q N + + + + ++ + D+ ++ Y G G L A++ +V VE Sbjct: 274 YRISAQSFYQVNTLMAEKLYQTAIDFSELSKDDVVIDAYSGIGTIGLSFAKNVKKVYGVE 333 Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298 + + +V+ A+ N N + N V S++ + +E + I VD Sbjct: 334 VIEAAVKDAQKNAERNGIRNATYVVDSAESAMEKWTKE------------GIKPSVILVD 381 Query: 299 PPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRH 355 PPR GL ++ + V P I Y+SCNP ++ RD+ + ++++ D FP+T H Sbjct: 382 PPRKGLTESFIEASVAMKPQKITYVSCNPATMARDIKRYQELGYDLKKVQPVDLFPHTHH 441 Query: 356 MECGVLLVR 364 +EC VL+ R Sbjct: 442 VECVVLMSR 450 >gi|169825121|ref|YP_001692732.1| RNA methyltransferase [Finegoldia magna ATCC 29328] gi|167831926|dbj|BAG08842.1| RNA methyltransferase [Finegoldia magna ATCC 29328] Length = 403 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 45/156 (28%), Positives = 76/156 (48%), Gaps = 20/156 (12%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +L+LYCG G ++ + + VE+ K +V+ A N N++ +++ + S+ Sbjct: 264 ILDLYCGIGTTTMYIGNG--NTIGVEVVKDAVKDANENKKLNNLESIQFIEEKSENVVGK 321 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCR 330 + +E F I VDPPR G+D+ V + ++YISC+P +L R Sbjct: 322 LTQEH--------------FDVILVDPPRKGMDEKVVDAIIKSTAKKLVYISCDPATLAR 367 Query: 331 DLSILSTTH-TIERLALFDQFPYTRHMECGVLLVRK 365 DL L+ +E + L D F T H+E V L++K Sbjct: 368 DLKALTENGFGVEDVKLVDMFAKTMHVET-VALIQK 402 >gi|323142713|ref|ZP_08077430.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Succinatimonas hippei YIT 12066] gi|322417508|gb|EFY08125.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Succinatimonas hippei YIT 12066] Length = 444 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 49/156 (31%), Positives = 75/156 (48%), Gaps = 18/156 (11%) Query: 214 LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273 L+L CG G SL+LA HF +V+ VEI + +V AA+ N N +NV + K+ ++ Sbjct: 303 LDLCCGVGTMSLLLAAHFKKVIGVEIVEEAVAAAKENAQLNKYDNVSFIASDLKKVLSSL 362 Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP---HILYISCNPDSLCR 330 E K + DP R+GL +A + + + I C+ +L R Sbjct: 363 INE--------------NVKAVIADPARAGLGEANCRALNRFKGEVKLALIFCSLTALKR 408 Query: 331 DLSI-LSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 DL I L I ++ D FP++ H+E VLL +K Sbjct: 409 DLPILLKGGWKIHQIQGVDMFPHSTHVETLVLLAKK 444 >gi|298243496|ref|ZP_06967303.1| RNA methyltransferase, TrmA family [Ktedonobacter racemifer DSM 44963] gi|297556550|gb|EFH90414.1| RNA methyltransferase, TrmA family [Ktedonobacter racemifer DSM 44963] Length = 463 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 64/190 (33%), Positives = 90/190 (47%), Gaps = 17/190 (8%) Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLARHFDRVLAVE 238 +R +SF Q N ++E LA + + ++ L+ Y G G FS LA RVLAVE Sbjct: 277 FRVSADSFFQVNLTQTAVLVERALAMLEPQRSEVVLDGYSGVGLFSTFLATRAARVLAVE 336 Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298 +V AR + N+ NN+ +S E T ER N+L R VD Sbjct: 337 SQPSAVMDARASSTLNNQNNI-----TSLEGTL----ERVLNQLH---YRRERIDLALVD 384 Query: 299 PPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTT--HTIERLALFDQFPYTR 354 PPR+G + +Q A I Y+SC+P +L RD++ L T + + D FP T Sbjct: 385 PPRTGCHPKALQALQTMAPRAICYVSCDPSTLARDIATLCTGGRYRLVSAQPVDMFPQTY 444 Query: 355 HMECGVLLVR 364 H+EC LL R Sbjct: 445 HIECVALLAR 454 >gi|296111048|ref|YP_003621429.1| RNA methyltransferase [Leuconostoc kimchii IMSNU 11154] gi|295832579|gb|ADG40460.1| RNA methyltransferase [Leuconostoc kimchii IMSNU 11154] Length = 500 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 97/388 (25%), Positives = 154/388 (39%), Gaps = 55/388 (14%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFR-------SEPIHYRMRAEFHIWHDGDDLYHIM 62 Y QLA K D L Q + FQ + P YR +A+F + GD L M Sbjct: 133 YAAQLAFKKDVLVQSLEKFQPKGWSTYDLRNTIGMENPYEYRNKAQFPVRKIGDQLRVGM 192 Query: 63 FDQQTKERMRIDYFMPGSLLINALMIEMMATIR-LEPLLRAKLFQIDYLTSQSDQAIVTL 121 + + + + + +P N ++++ TIR L L ++ D + + IV Sbjct: 193 YKRSSHDLVD----LPVVHTQNPATMKVLRTIRELLDKLSVSIYNEDK-NRGTVKTIVAR 247 Query: 122 IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRA-----------NKTKICL-------- 162 + H D + + D I I +A N + L Sbjct: 248 VSHTTGD--VQLTFVTNTDGFPGDTALIAAINQALPEVTGIFQNFNPGRTSLVWGDETIK 305 Query: 163 --DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCG 219 +DY++E TV G+T ++ +F Q N + + L+A D L++ Y G Sbjct: 306 LWGKDYIEE--TVMGKT--FQLSPRAFMQLNHTQMSVVYKEALSALNLTHADKLVDAYSG 361 Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279 G L LA V +EI +V+ A N NH+ N +++E + E Sbjct: 362 VGTIGLSLADKVGEVRGMEIIPEAVDDANINAKINHIENAHYEIGTAEELFPKWQSE--- 418 Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDA-TVGMVQAYPH-ILYISCNPDSLCRDLSILST 337 + + VDPPR+GLD A +++ P +YISCN +L RDL L+ Sbjct: 419 ---------GWLADALVVDPPRTGLDTALRREILRTQPEKFVYISCNASTLARDLVDLTK 469 Query: 338 THTIERLALFDQFPYTRHMECGVLLVRK 365 + +E + D FP T E V L R+ Sbjct: 470 AYKVEYIQSIDMFPQTARWEGVVKLTRR 497 >gi|187932009|ref|YP_001891994.1| 23S rRNA 5-methyluridine methyltransferase [Francisella tularensis subsp. mediasiatica FSC147] gi|187712918|gb|ACD31215.1| RNA methyltransferase, trmA family [Francisella tularensis subsp. mediasiatica FSC147] Length = 449 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 48/177 (27%), Positives = 88/177 (49%), Gaps = 15/177 (8%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 N FTQ N IN M++ + + D +++L+CG GNF+L +++H V+ VE Sbjct: 276 NDFTQVNNDINKKMIKRAIELLDISENDSIIDLFCGLGNFTLPISQHAKTVIGVEGEPTM 335 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 V+ A+ N++ NV + ++ + FN ++ + + +DPPR+G Sbjct: 336 VKRAKETADNNNITNVNFY---AANLFESFEDKEWFN--------NFEYNKMLLDPPRAG 384 Query: 304 LDDATVGMVQ-AYPHILYISCNPDSLCRDLSILSTTHTIERLA--LFDQFPYTRHME 357 + + + I+Y+SC+ +L RD IL T + ++ + D FP+T H+E Sbjct: 385 AQEVCNNIEKFNVKRIVYVSCDTAALARDAGILVNTKGYKLISAGVMDMFPHTMHVE 441 >gi|332366968|gb|EGJ44708.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis SK1059] Length = 469 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 50/155 (32%), Positives = 76/155 (49%), Gaps = 15/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +L+ Y G G L +A+ +V VE+ +VE +R N A N + N V ++E Q Sbjct: 321 VLDAYSGIGTIGLSVAKQVKQVYGVEVIPEAVENSRKNAAINGITNASYVCAPAEEAIQ- 379 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCR 330 N LK+ + I VDPPR GL ++ + V P I YISCN ++ R Sbjct: 380 -------NWLKE----GIQADVILVDPPRKGLTESFIKASVSMKPKKITYISCNVATMAR 428 Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364 D+ + + ++++ D FP T H+E LLVR Sbjct: 429 DIKLYQELGYELKKVQPVDLFPQTHHVEAVSLLVR 463 >gi|313147266|ref|ZP_07809459.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] gi|313136033|gb|EFR53393.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] Length = 463 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 56/184 (30%), Positives = 89/184 (48%), Gaps = 22/184 (11%) Query: 186 SFTQPNAG--INVHMLEWVLAATKGIQGDLL-ELYCGNGNFSLVLARHFDRVLAVEIAKP 242 SF Q N+G N++ + A G G+L+ +LY G G + ++R +V+ +E Sbjct: 292 SFYQTNSGQAYNLYKVARDFAGLTG--GELVYDLYTGTGTIANFVSRQARQVIGIEYVPE 349 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKE-FTQAMRREREFNRLKDIDIHSY-RFKTIFVDPP 300 ++E A+ N N + N K+ TQ I+ Y R I DPP Sbjct: 350 AIEDAKVNAEINGIENTLFFAGDMKDILTQDF-------------INQYGRPDVIITDPP 396 Query: 301 RSGLDDATVGMVQ-AYPH-ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMEC 358 R+G+ V ++ A P I+Y+SCNP + RDL +L + ++ + D FP+T H+E Sbjct: 397 RAGMHQDVVDVILFAEPKRIVYVSCNPATQARDLQLLDVKYRVKAVQPVDMFPHTHHVEN 456 Query: 359 GVLL 362 VLL Sbjct: 457 VVLL 460 >gi|54112953|gb|AAV29110.1| NT02FT0992 [synthetic construct] Length = 449 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 48/177 (27%), Positives = 88/177 (49%), Gaps = 15/177 (8%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 N FTQ N IN M++ + + D +++L+CG GNF+L +++H V+ VE Sbjct: 276 NDFTQVNNDINKKMIKRAIELLDISENDSIIDLFCGLGNFTLPISQHAKTVIGVEGEPTM 335 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 V+ A+ N++ NV + ++ + FN ++ + + +DPPR+G Sbjct: 336 VKRAKETADNNNITNVNFY---AANLFESFEDKEWFN--------NFEYNKMLLDPPRAG 384 Query: 304 LDDATVGMVQ-AYPHILYISCNPDSLCRDLSILSTTHTIERLA--LFDQFPYTRHME 357 + + + I+Y+SC+ +L RD IL T + ++ + D FP+T H+E Sbjct: 385 AQEVCNNIEKFNVKRIVYVSCDTAALARDAGILVNTKGYKLISAGVMDMFPHTMHVE 441 >gi|308172666|ref|YP_003919371.1| RNA methyltransferase [Bacillus amyloliquefaciens DSM 7] gi|307605530|emb|CBI41901.1| putative RNA methyltransferase [Bacillus amyloliquefaciens DSM 7] gi|328552427|gb|AEB22919.1| RNA methyltransferase [Bacillus amyloliquefaciens TA208] gi|328910776|gb|AEB62372.1| putative RNA methyltransferase [Bacillus amyloliquefaciens LL3] Length = 466 Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 40/157 (25%), Positives = 74/157 (47%), Gaps = 14/157 (8%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G + ++ + +++ K S++ A+ N + + N V +++ + Sbjct: 321 VVDAYCGVGTIGMWVSSGAKEIRGMDVIKESIDDAKKNAKKHGIKNAAYVTGTAEHWLPK 380 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCR 330 +E +R + VDPPR+G D + ++ +Y+SCNP +L + Sbjct: 381 WTKE------------GFRPDVVIVDPPRTGCDGTFLDTIKKVKPKRFVYVSCNPSTLAK 428 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRKPS 367 DL LS + +E + D FP T H+E LV K S Sbjct: 429 DLQALSKDYRVEYIQPVDMFPQTAHVEAVAKLVLKSS 465 >gi|327402274|ref|YP_004343112.1| 23S rRNA m(5)U-1939 methyltransferase [Fluviicola taffensis DSM 16823] gi|327317782|gb|AEA42274.1| 23S rRNA m(5)U-1939 methyltransferase [Fluviicola taffensis DSM 16823] Length = 475 Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 44/156 (28%), Positives = 80/156 (51%), Gaps = 23/156 (14%) Query: 211 GDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268 G +++L+CG G ++A+ + ++ V+I + ++E A+ N N+++++ + Sbjct: 328 GVIMDLFCGTGTIGQLVAQRVNAGEIIGVDIVEEAIEDAKRNAKRNNLSHLHFFAADVGK 387 Query: 269 FTQAMRREREFNRLKDIDIHSY---RFKTIFVDPPRSGLDDATVGMVQAY--PHILYISC 323 F + +H R TI +DPPR+G+ T+ V A H++YISC Sbjct: 388 F---------------LTLHPEYLNRIDTIVLDPPRAGIAPKTLQKVIALGASHLVYISC 432 Query: 324 NPDSLCRDLSILST-THTIERLALFDQFPYTRHMEC 358 NP + RD L + + +L+L DQFP+T H+E Sbjct: 433 NPSTQARDTETLEKGGYKLTKLSLVDQFPHTSHIEA 468 >gi|269139581|ref|YP_003296282.1| 23S rRNA metyluridine methyltransferase [Edwardsiella tarda EIB202] gi|267985242|gb|ACY85071.1| 23S rRNA metyluridine methyltransferase [Edwardsiella tarda EIB202] gi|304559469|gb|ADM42133.1| 23S rRNA (Uracil-5-) -methyltransferase RumB [Edwardsiella tarda FL6-60] Length = 377 Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 55/186 (29%), Positives = 85/186 (45%), Gaps = 25/186 (13%) Query: 185 NSFTQPNAGIN----VHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240 SF Q N + +WV A G+ ++ +L+CG G F L A + +EI+ Sbjct: 208 QSFFQTNPAVAQALYAQARDWVQAL--GVT-EMWDLFCGVGGFGLHCATPEMTLTGIEIS 264 Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300 ++ AR + A + V + S F D S + + V+PP Sbjct: 265 AEAIACARRSAAQLGLTQVNFAALDSSAFA---------------DARSAAPQLVLVNPP 309 Query: 301 RSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMEC 358 R G+ A + A P+ILY SCN S+ +D+ L+ + +E++ LFD FP+T H E Sbjct: 310 RRGIGAALCDYLSRMAPPYILYSSCNAQSMVQDIERLAD-YRLEKVRLFDMFPHTAHYEV 368 Query: 359 GVLLVR 364 LLVR Sbjct: 369 LTLLVR 374 >gi|45185942|ref|NP_983658.1| ACR256Cp [Ashbya gossypii ATCC 10895] gi|44981732|gb|AAS51482.1| ACR256Cp [Ashbya gossypii ATCC 10895] Length = 592 Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 52/161 (32%), Positives = 75/161 (46%), Gaps = 23/161 (14%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK-IVRMSSKEFTQ 271 L++ YCG+G FS+ ++ DRV+ VE++ SV A N N V N IV + K F Sbjct: 445 LVDAYCGSGLFSITASKGVDRVIGVEVSADSVAFAERNAKTNGVTNCTFIVGKAEKIFAS 504 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLC 329 ID R ++ +DPPR G DD + + Y I+YISCN S Sbjct: 505 -------------IDTPCDR-TSVILDPPRKGCDDVFLKQLAEYNPARIVYISCNVHSQA 550 Query: 330 RDLSIL------STTHTIERLALFDQFPYTRHMECGVLLVR 364 RD+ + ++ + FD FP T H+E +L R Sbjct: 551 RDVQYFLKETPNGARYKVDSIRGFDFFPQTHHVEGVCVLSR 591 >gi|314934062|ref|ZP_07841425.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus caprae C87] gi|313653173|gb|EFS16932.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus caprae C87] Length = 455 Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 46/159 (28%), Positives = 70/159 (44%), Gaps = 22/159 (13%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +L+ YCG G L +A V VE+ +++ A N N +NN Sbjct: 311 VLDTYCGIGTIGLYMAPQAKHVYGVEVVPSAIKDAEENATKNQLNNTTF----------- 359 Query: 273 MRREREFNRLKDI----DIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPD 326 E + +D+ R + VDPPR G D+ V +++ P I+YISCNP Sbjct: 360 -----ECGKAEDVILEWKAQGIRPDVVMVDPPRKGCDETFVKTLLKLNPKRIVYISCNPS 414 Query: 327 SLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 + RD +L+ + + + D FP T H+E L RK Sbjct: 415 TQQRDAQLLANNYHLVEITPVDMFPQTTHIETVALFERK 453 >gi|227508696|ref|ZP_03938745.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227191830|gb|EEI71897.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 472 Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 95/391 (24%), Positives = 156/391 (39%), Gaps = 61/391 (15%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFR-------SEPIHYRMRAEFHIWHDGD----DL 58 Y +QL K D ++ + ++ + ++ +PIHYR +A F I +DG L Sbjct: 108 YPKQLEFKRDVIKDSLEKYKPAGYRKYKLLPTIGMDDPIHYRNKATFQIRNDGQKVIAGL 167 Query: 59 Y----HIMFDQQTK--------ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQ 106 Y H + D +T + MR M L I E A I ++RA Sbjct: 168 YKHRSHTVVDLKTSALQYPLTMKVMRAVVEMIDDLGIPVYDEEKNAGIIKTVVVRA---- 223 Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY 166 + +D+A VT I + R+ H + ++ N K L + Sbjct: 224 ----ATATDEAQVTFITQSKKLLKKHQLLERID---HDLPEVVSVMQNVNPGKTSLV--W 274 Query: 167 VDERLTVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATK-GIQGDLLELY 217 +E + +AG+ I + N +F Q N + + + A + + L++ Y Sbjct: 275 GEETIHLAGKDKITEVLNNLSFDLSARAFLQVNPEMTAVLYQEAFKALELSGKEKLVDAY 334 Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277 G G L +AR V ++ K +V+ A N N + N A+ Sbjct: 335 SGVGTIGLSVARQVREVRGMDTIKDAVDDANANAIKNGIVN-------------ALYEVG 381 Query: 278 EFNRLKDIDIH-SYRFKTIFVDPPRSGLDDATVGMV-QAYPH-ILYISCNPDSLCRDLSI 334 E +L + I + + VDPPR+GL D+ + + P +YISCNP +L RDL Sbjct: 382 EAEKLLPLWIEDGWNPTAMIVDPPRTGLADSLIDTILDITPKKFVYISCNPSTLARDLVK 441 Query: 335 LSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 L+ + +E + D P T EC V +K Sbjct: 442 LTRKYNVEYIQSVDLMPQTSRCECVVKFKKK 472 >gi|313637426|gb|EFS02888.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria seeligeri FSL S4-171] Length = 453 Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 45/153 (29%), Positives = 75/153 (49%), Gaps = 15/153 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G+ SL LA+ V VEI +++ AR N N+++N ++E Sbjct: 310 VIDAYCGIGSISLCLAKKAKHVYGVEIVDQAIQDARANAELNNLSNTTFETGKAEEVIPT 369 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330 + + D+ + VDPPR G D+ + + A ++Y+SCNP +L R Sbjct: 370 WYKA---GIVADV---------LVVDPPRKGCDEKLLQTILAMKPKKVVYVSCNPGTLAR 417 Query: 331 DLSILS-TTHTIERLALFDQFPYTRHMECGVLL 362 D+ ILS + ++ D FP T H+E +L Sbjct: 418 DMKILSDGGYEANQVQPVDMFPMTTHIEAVTVL 450 >gi|302537426|ref|ZP_07289768.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptomyces sp. C] gi|302446321|gb|EFL18137.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptomyces sp. C] Length = 443 Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 62/206 (30%), Positives = 98/206 (47%), Gaps = 27/206 (13%) Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGN 222 R +V ER GRT YR F Q + +++ V+ +G++ L+LYCG G Sbjct: 251 RPFVRERAD--GRT--YRVGMGGFWQVHPQAADTLIKAVMQGLMPRKGEMALDLYCGVGI 306 Query: 223 FSLVLARHFDR---VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279 F+ LA VL +E K +VE AR+N+A + VR+ + A+ R Sbjct: 307 FAGALAERLGETGAVLGIESGKRAVEDARHNLA-----DFPRVRIEQGKVDTALPR---- 357 Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILS- 336 + + D+ + +DPPR+G TV + + I Y++C+P +L RDL Sbjct: 358 TGITECDL-------VVLDPPRAGAGKQTVRHIASLSARRIAYVACDPAALARDLGYFKD 410 Query: 337 TTHTIERLALFDQFPYTRHMECGVLL 362 + + L +FD FP T H+EC +L Sbjct: 411 AGYRVRTLRVFDLFPMTHHVECVAIL 436 >gi|258515464|ref|YP_003191686.1| RNA methyltransferase, TrmA family [Desulfotomaculum acetoxidans DSM 771] gi|257779169|gb|ACV63063.1| RNA methyltransferase, TrmA family [Desulfotomaculum acetoxidans DSM 771] Length = 458 Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 56/185 (30%), Positives = 86/185 (46%), Gaps = 18/185 (9%) Query: 185 NSFTQPNAGINVHMLEWVL--AATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 NSF Q N + + + L A KG + +L+ YCG G ++ + + +V +E Sbjct: 286 NSFYQINPKQTIKLYDKALEYAELKGNE-TVLDAYCGIGTIAMYFSANARKVTGLESLNI 344 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302 +V+ AR N A N +NNV+ + E + + E N DI I +DPPR Sbjct: 345 AVKDARENAALNRLNNVEFL---CGEVEKLLPEFAERNNNVDI---------IILDPPRQ 392 Query: 303 GLDDATVGMVQAY--PHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECG 359 G + + P I+Y+SCNP +L RDL +L + I + D FP T H+E Sbjct: 393 GCKQVVLEAIAKMRIPKIIYVSCNPGTLARDLGLLDKLGYGIIEVQPVDMFPQTSHIEIC 452 Query: 360 VLLVR 364 L + Sbjct: 453 TFLSK 457 >gi|307244550|ref|ZP_07526655.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Peptostreptococcus stomatis DSM 17678] gi|306492077|gb|EFM64125.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Peptostreptococcus stomatis DSM 17678] Length = 455 Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 55/210 (26%), Positives = 92/210 (43%), Gaps = 28/210 (13%) Query: 168 DERLTVAGRTLIYRQIEN--------SFTQPNA-GINV-HMLEWVLAATKGIQGDLLELY 217 DE + GR Y ++ SF Q N G V + + A KG + +LY Sbjct: 257 DELRILHGRDYFYEEVLGLRFKISPFSFFQTNTKGAEVLYTIAREFAGDKGDGKVVFDLY 316 Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277 G G ++A+ +V +E+ + +V AA +N N ++N + + + ++ + Sbjct: 317 SGTGTIGQLMAKTAKKVYGIELVEEAVVAANHNAGLNKLDNCEFIAGDVAKLVTSLPEKA 376 Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRD-LSI 334 + I VDPPR+G+ V + + I+Y+SCNP SL + + Sbjct: 377 DL---------------IIVDPPRAGILGNGVKDIAEFGAGEIVYVSCNPKSLVENVVEF 421 Query: 335 LSTTHTIERLALFDQFPYTRHMECGVLLVR 364 S + +++L L D FP H E LLVR Sbjct: 422 ESRGYKLDKLKLMDMFPSGPHCESVALLVR 451 >gi|282877944|ref|ZP_06286753.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella buccalis ATCC 35310] gi|281299945|gb|EFA92305.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella buccalis ATCC 35310] Length = 508 Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 55/188 (29%), Positives = 88/188 (46%), Gaps = 14/188 (7%) Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFSLVLARHFDRVLA 236 L ++ SF Q N H+ + +L+ +LY G G + +AR V+ Sbjct: 329 LKFKVAAKSFYQTNTNQAYHLYSVAREFAQLTGKELVYDLYTGTGTIANFVAREAREVIG 388 Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296 +E + +++ A+ N AAN ++N + K+ EF I H R I Sbjct: 389 IEYVEDAIKDAKVNSAANDIHNTQFYAGDMKDILT-----EEF-----IAEHG-RPDVII 437 Query: 297 VDPPRSGL-DDATVGMVQAYPH-ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTR 354 DPPR+G+ D ++ A P I+Y+SCNP + RDL +L + + + D FP+T Sbjct: 438 TDPPRAGMHPDVVRTILGAAPQRIVYVSCNPATQARDLQMLDEQYKVMAVQPVDMFPHTP 497 Query: 355 HMECGVLL 362 H+E VLL Sbjct: 498 HVENVVLL 505 >gi|322385303|ref|ZP_08058948.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus cristatus ATCC 51100] gi|321270562|gb|EFX53477.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus cristatus ATCC 51100] Length = 453 Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 49/156 (31%), Positives = 77/156 (49%), Gaps = 15/156 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +L+ Y G G L LA +V VE+ +VE ++ N N + + V +++ Q Sbjct: 308 VLDAYSGIGTIGLSLADRVQQVYGVEVIPEAVENSQRNAELNGITSASYVCAPAEKAIQT 367 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330 N+ D+ I VDPPR GL ++ + V P I+YISCNP ++ R Sbjct: 368 W-----LNQGVKADV-------ILVDPPRKGLTESFITSSVSMEPQRIVYISCNPATMAR 415 Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRK 365 D+ + + ++++ D FP T H+EC VLL RK Sbjct: 416 DIKLYQGQGYELKKVQPVDLFPQTHHVECVVLLQRK 451 >gi|33240415|ref|NP_875357.1| SAM-dependent methyltransferase related to tRNA (uracil-5-)-methyltransferase [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|50401517|sp|Q7VBX7|Y965_PROMA RecName: Full=Uncharacterized RNA methyltransferase Pro_0965 gi|33237942|gb|AAQ00010.1| SAM-dependent methyltransferase related to tRNA (uracil-5-)-methyltransferase [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 419 Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 64/218 (29%), Positives = 104/218 (47%), Gaps = 35/218 (16%) Query: 158 TKICLDRDYVDERLT----VAGRTLIYRQIENSFTQPN---AGINVHMLEWVLAATKGIQ 210 T+I RDY+ ++ + G T SF Q N A ++ + +++ T I Sbjct: 223 TEILTGRDYIYDKFCHMDILIGST--------SFFQVNLVEAEKAINCIRNIISNTNKIV 274 Query: 211 GDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270 +++ Y G G S+ LA RV+ +EI EA I +NN+K + +++ T Sbjct: 275 -RIIDAYSGIGTMSIPLASDGYRVIGIEINN---EAHEIAIRNAEINNIKTITFENQDVT 330 Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYP-HILYISCNPDSL 328 + + + N + +DPPR GLD + + ++ + P HI Y+SCNP +L Sbjct: 331 KYLPKILLPNDF------------LILDPPRKGLDPSLIDVITKLMPIHICYLSCNPATL 378 Query: 329 CRDLSILSTTH--TIERLALFDQFPYTRHMECGVLLVR 364 RDLS++ H +I + FD FP T H+E V L R Sbjct: 379 ARDLSLILREHKYSIISITAFDFFPQTTHLETLVYLKR 416 >gi|322388962|ref|ZP_08062533.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus parasanguinis ATCC 903] gi|321144331|gb|EFX39738.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus parasanguinis ATCC 903] Length = 450 Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 44/155 (28%), Positives = 69/155 (44%), Gaps = 14/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L++ YCG G A V ++I ++E A+YN N +++E Sbjct: 308 LIDAYCGVGTIGFAFANRVKSVRGMDIIPEAIEDAKYNAKRMGFENTHYEAGTAEEIIPR 367 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCR 330 +E YR + VDPPR+GL + + Y ++Y+SCN +L R Sbjct: 368 WYQE------------GYRANAVIVDPPRTGLGTKLIETLLHYAPEKMVYVSCNVSTLAR 415 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 DL L+ + +E + D FP+T E V LV+K Sbjct: 416 DLVALTKVYQVEYIQSVDMFPHTARTEAVVKLVKK 450 >gi|296877010|ref|ZP_06901054.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus parasanguinis ATCC 15912] gi|296432045|gb|EFH17848.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus parasanguinis ATCC 15912] Length = 450 Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 44/155 (28%), Positives = 69/155 (44%), Gaps = 14/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L++ YCG G A V ++I ++E A+YN N +++E Sbjct: 308 LIDAYCGVGTIGFAFANRVKSVRGMDIIPEAIEDAKYNAKRMGFENTHYEAGTAEEIIPR 367 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCR 330 +E YR + VDPPR+GL + + Y ++Y+SCN +L R Sbjct: 368 WYQE------------GYRANAVIVDPPRTGLGTKLIETLLHYAPEKMVYVSCNVSTLAR 415 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 DL L+ + +E + D FP+T E V LV+K Sbjct: 416 DLVALTKVYQVEYIQSVDMFPHTARTEAVVKLVKK 450 >gi|294497204|ref|YP_003560904.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus megaterium QM B1551] gi|294347141|gb|ADE67470.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus megaterium QM B1551] Length = 461 Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 55/213 (25%), Positives = 101/213 (47%), Gaps = 27/213 (12%) Query: 166 YVDERLTVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGD--LLE 215 + DE T+AG+++I + + +F Q N V + + V A + G+ +++ Sbjct: 262 FGDETFTLAGKSVIQETLGDISFELSARAFFQLNPLQTVKLYDEVKKAA-ALTGNEKIVD 320 Query: 216 LYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275 YCG G L LA+ + ++ + S+ AR N + + V ++++ + Sbjct: 321 AYCGVGTIGLWLAKDAKEIRGMDTIEESIVDARKNAKDHGFEHATYVTGPAEKWMPKWVK 380 Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA---TVGMVQAYPHILYISCNPDSLCRDL 332 E ++ I VDPPR+G DD T+ V++ ++Y+SCNP +L +D+ Sbjct: 381 E------------GWKPDLIVVDPPRTGCDDKLLKTILQVKSK-KVVYVSCNPSTLAKDV 427 Query: 333 SILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 LS + ++ + D FP+T H+E V L K Sbjct: 428 QQLSKAYHVDYIQPVDMFPHTAHVENVVSLTLK 460 >gi|148657992|ref|YP_001278197.1| (Uracil-5)-methyltransferase [Roseiflexus sp. RS-1] gi|148570102|gb|ABQ92247.1| (Uracil-5)-methyltransferase [Roseiflexus sp. RS-1] Length = 407 Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 58/179 (32%), Positives = 91/179 (50%), Gaps = 21/179 (11%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD----LLELYCGNGNFSLVLARHFDRVLAVEIA 240 N+F Q N + + +LE V A G +G+ L +LY G G +L +A D+++ VE Sbjct: 235 NTFFQNNVWLLMPLLEAVRDAVAG-EGERARALADLYGGVGTIALFVADLADQIVCVESV 293 Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300 + SV AR NIA ++ IV+ + A+R ER F + DPP Sbjct: 294 EESVRLARENIARAGFEHIAIVK---ADVADALR-ERTRGA----------FDIVIADPP 339 Query: 301 RSGLD-DATVGMVQAYPH-ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHME 357 R+GL D +++ P I+YISCNP + D+ +L+ + + L +D FP+T H+E Sbjct: 340 RTGLGPDVCRELLRLRPQRIVYISCNPLTQRDDVRMLTEAYRLTSLRGYDMFPHTPHLE 398 >gi|322372576|ref|ZP_08047112.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus sp. C150] gi|321277618|gb|EFX54687.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus sp. C150] Length = 451 Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 47/155 (30%), Positives = 76/155 (49%), Gaps = 15/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ Y G G L A+ V VE+ + +VE A+ N N + N V S++ A Sbjct: 308 VIDAYSGIGTIGLSFAKQVKEVYGVEVIETAVEDAKKNAERNGITNAHYVADSAE---NA 364 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330 M + + D+ I VDPPR GL ++ + V P I Y+SCNP ++ R Sbjct: 365 MAKWSKDGIKPDV---------IIVDPPRKGLTESFIKASVAMQPEKITYVSCNPATMAR 415 Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364 D+ + + ++++ D FP T H+EC LLV+ Sbjct: 416 DIKLYQELGYELKKVQPVDLFPQTHHVECVALLVK 450 >gi|317495594|ref|ZP_07953962.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Gemella moribillum M424] gi|316914408|gb|EFV35886.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Gemella moribillum M424] Length = 544 Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 53/202 (26%), Positives = 91/202 (45%), Gaps = 18/202 (8%) Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNF 223 DY+ E++ G T Y SF Q N G + + V+ + ++ L+ +CG G Sbjct: 266 DYIVEKI---GDTK-YELSAKSFFQLNPGATKKLYDKVVEFADLRETNIVLDAFCGVGTI 321 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 ++R V V+I + +++ A N+ N++ N V + + +++ Sbjct: 322 GQYVSRKCHEVYGVDIVEDAIKDANNNVKLNNLTNCIYVAGDANKIVPRWKKK------- 374 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQA-YPHILYISCNPDSLCRDLSILSTTHTIE 342 F VDPPR+GL ++ I+Y+SCNP +L RDL +L+ + I Sbjct: 375 -----GINFDVAIVDPPRTGLGHLAKNLLDVDAKKIVYVSCNPSTLARDLKVLTRKYKIR 429 Query: 343 RLALFDQFPYTRHMECGVLLVR 364 R+ D FP T +E LL + Sbjct: 430 RIQPIDMFPGTAAVETVALLSK 451 >gi|295108003|emb|CBL21956.1| 23S rRNA m(5)U-1939 methyltransferase [Ruminococcus obeum A2-162] Length = 455 Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 49/146 (33%), Positives = 75/146 (51%), Gaps = 14/146 (9%) Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274 +LYCG G SL LA+ V VEI ++E AR N N ++NV+ ++E + Sbjct: 311 DLYCGIGTISLFLAQKAKFVRGVEIVPAAIEDARRNAHLNEIDNVEFFVGKAEE---VLP 367 Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYPH-ILYISCNPDSLCRDL 332 RE E N + I VDPPR G D+ + + + P ++Y+SC+ +L RDL Sbjct: 368 REYEKNGV--------YADVIVVDPPRKGCDEMLLKTILKMQPKRVVYVSCDSATLARDL 419 Query: 333 SILS-TTHTIERLALFDQFPYTRHME 357 L + ++++ DQFP T H+E Sbjct: 420 RFLCDNGYELKKVCGVDQFPQTVHVE 445 >gi|167625624|ref|YP_001675918.1| 23S rRNA methyluridine methyltransferase [Shewanella halifaxensis HAW-EB4] gi|167355646|gb|ABZ78259.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Shewanella halifaxensis HAW-EB4] Length = 358 Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 44/154 (28%), Positives = 76/154 (49%), Gaps = 16/154 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L +L+CG G F L A + +EI+ ++ A+ + A + V + S F Q Sbjct: 217 LWDLFCGVGGFGLHCASKQSALTGIEISAEAITCAKLSAEAMGLTQVNFTALDSTGFAQG 276 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCR 330 KD + + V+PPR G+ ++ + A+ ILY SCNP +L + Sbjct: 277 CDA-------KD------KPDVVIVNPPRRGIGESLCQSLSAFAPKAILYSSCNPHTLAK 323 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 DL+ + + ++++ LFD FP+T H E V+L++ Sbjct: 324 DLACIQ-GYRVQKVQLFDMFPHTDHFEVLVMLLK 356 >gi|314923388|gb|EFS87219.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA [Propionibacterium acnes HL001PA1] Length = 393 Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 63/221 (28%), Positives = 96/221 (43%), Gaps = 36/221 (16%) Query: 161 CLDRD-----YVDERLTVAGRTLI-------YRQIENSFTQPNAGINVHMLEWVLAATKG 208 CL D D +L G T+ ++ F Q + G + + V+ K Sbjct: 192 CLSEDPEVSVIADGQLVAGGETMTAHVGQRRWKVGAGGFWQMHPGAAEALADAVIGGLKP 251 Query: 209 IQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267 QGD L+LYCG G F+ +LA RV VE+++ +V AR N+ Sbjct: 252 QQGDEALDLYCGVGLFAGLLADRGVRVRGVEVSRQAVALARRNVPGG------------- 298 Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNP 325 FT A R ER R+ + + + +DPPR G V + + P I +++C+P Sbjct: 299 RFT-AGRVERVLPRM------APKANIVVLDPPRRGAGKTVVQAVARTSPRAIAHVACDP 351 Query: 326 DSLCRDLSILSTTHTIER-LALFDQFPYTRHMECGVLLVRK 365 +L RDL + + R + FD FP T H+E +L K Sbjct: 352 AALARDLHLFDVNGYLPRSIRAFDVFPMTHHVEAVAILEPK 392 >gi|153854051|ref|ZP_01995384.1| hypothetical protein DORLON_01375 [Dorea longicatena DSM 13814] gi|149753433|gb|EDM63364.1| hypothetical protein DORLON_01375 [Dorea longicatena DSM 13814] Length = 470 Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 46/155 (29%), Positives = 81/155 (52%), Gaps = 9/155 (5%) Query: 208 GIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265 G+ G+ + +LYCG G SL LA+ +V VEI +++ A+ N N + N + Sbjct: 310 GLTGNEAVWDLYCGIGTISLFLAKKAKQVYGVEIVPQAIDDAKNNAKINDITNAEFYVGK 369 Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISC 323 ++E +E E K + + I VDPPR G +++ + +V P ++Y+SC Sbjct: 370 AEEVLPEYYKEYE----KTHNGETAHADVIVVDPPRKGCEESLLQTIVDMQPEKVVYVSC 425 Query: 324 NPDSLCRDLSIL-STTHTIERLALFDQFPYTRHME 357 + +L RD+ L + + ++ + DQFP+T H+E Sbjct: 426 DSATLARDVKFLRANGYELKDVTPVDQFPHTVHVE 460 >gi|291518105|emb|CBK73326.1| 23S rRNA m(5)U-1939 methyltransferase [Butyrivibrio fibrisolvens 16/4] Length = 460 Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 56/217 (25%), Positives = 107/217 (49%), Gaps = 25/217 (11%) Query: 157 KTKICLDRDYVDERLTVA-GRTLIYRQIENSFTQPNAGINVHMLEWVLAAT---KGIQG- 211 +TK+ ++ + + +T+ G T+ + NSF Q +N +E + + G+ G Sbjct: 259 ETKVLYGKEAIRDTITLTNGDTIAFDISANSFYQ----VNHDQMERLYSKALEYAGLTGK 314 Query: 212 -DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270 ++ +LYCG G SL +A+H V+ +E+ ++E A+ N N ++N + ++ Sbjct: 315 EEVWDLYCGIGTISLSMAKHAGHVIGIEVVPQAIENAKANAKLNGLDNTEFYCGEAEVVL 374 Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSL 328 + + ++ D+ I VDPPR G D + M++ P I+Y+SC+ +L Sbjct: 375 PEI-----YEKMSHPDV-------IMVDPPRKGCDVVALDTMIKMQPERIVYVSCDSATL 422 Query: 329 CRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364 RDL L + +++ + DQF +T H E +L + Sbjct: 423 ARDLKHLEENGYHLQKYTVCDQFGHTMHTETVAILAK 459 >gi|41614849|ref|NP_963347.1| hypothetical protein NEQ053 [Nanoarchaeum equitans Kin4-M] gi|51316718|sp|Q74N58|Y053_NANEQ RecName: Full=Uncharacterized RNA methyltransferase NEQ053 gi|40068573|gb|AAR38908.1| NEQ053 [Nanoarchaeum equitans Kin4-M] Length = 447 Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 56/184 (30%), Positives = 94/184 (51%), Gaps = 24/184 (13%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 NSF Q N+ V++++ V + + D+ L+LY G G FSL +A +V+ +EI + + Sbjct: 280 NSFFQTNSYQAVNLVKIVKEFLEPSENDVVLDLYSGVGLFSLQIANEVKKVIGIEIVEEA 339 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 VE A+ N + N+++ I S E ++ + I VDPPR+G Sbjct: 340 VEMAKLNASINNIDAEFIA--SPVEKAPIIKANK-----------------IIVDPPRAG 380 Query: 304 LDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVL 361 L + + ++ I+Y+SCNP + RD++ L I+ L D FP T H+E V+ Sbjct: 381 LTNKAIEYIEKINPDTIVYVSCNPYTQKRDINKLKGYKIIDMQPL-DMFPNTPHIE-NVI 438 Query: 362 LVRK 365 L++K Sbjct: 439 LMKK 442 >gi|198274964|ref|ZP_03207496.1| hypothetical protein BACPLE_01123 [Bacteroides plebeius DSM 17135] gi|198272411|gb|EDY96680.1| hypothetical protein BACPLE_01123 [Bacteroides plebeius DSM 17135] Length = 472 Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 52/184 (28%), Positives = 84/184 (45%), Gaps = 16/184 (8%) Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDLL--ELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 SF Q N+ + L V G+ G+ L +LY G G + +AR +V+ +E + Sbjct: 301 SFYQTNSE-QAYNLYKVAREFAGLTGNELVYDLYTGTGTIANFVARQARKVVGIEYVPEA 359 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 +E A+ N A N ++N K+ D R I DPPR+G Sbjct: 360 IEDAKVNSALNGIDNTLFYAGDMKDILT-----------NDFIAEHGRPDVIITDPPRAG 408 Query: 304 LDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVL 361 + + + ++ A I+Y+SCNP + RDL +L + + + D FP+T H+E V Sbjct: 409 MHNDVIDVILAAEPKRIVYVSCNPATQARDLQLLDGKYKVTAVQPVDMFPHTHHVENVVQ 468 Query: 362 LVRK 365 L R+ Sbjct: 469 LERR 472 >gi|125718271|ref|YP_001035404.1| RNA methyltransferase [Streptococcus sanguinis SK36] gi|125498188|gb|ABN44854.1| RNA methyltransferase, putative [Streptococcus sanguinis SK36] Length = 456 Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 50/155 (32%), Positives = 76/155 (49%), Gaps = 15/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +L+ Y G G L +A+ +V VE+ +VE +R N A N + N V ++E Q Sbjct: 308 VLDAYSGIGTIGLSVAKQVKQVYGVEVIPEAVENSRKNAAINGITNASYVCAPAEEAIQ- 366 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCR 330 N LK+ + I VDPPR GL ++ + V P I YISCN ++ R Sbjct: 367 -------NWLKE----GIQADVILVDPPRKGLTESFIKASVSMEPKKITYISCNVATMAR 415 Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364 D+ + + ++++ D FP T H+E LLVR Sbjct: 416 DIKLYQELGYELKKVQPVDLFPQTHHVEAVSLLVR 450 >gi|256419908|ref|YP_003120561.1| RNA methyltransferase, TrmA family [Chitinophaga pinensis DSM 2588] gi|256034816|gb|ACU58360.1| RNA methyltransferase, TrmA family [Chitinophaga pinensis DSM 2588] Length = 472 Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 53/220 (24%), Positives = 101/220 (45%), Gaps = 34/220 (15%) Query: 157 KTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNA--GINVHMLEWVLAATKGIQGDLL 214 + K + YV+E+L ++ SF Q N G ++ + A G + + Sbjct: 273 EPKTYFGKGYVEEKL----EDFTFKIGPKSFFQTNTYQGEALYQVTRDFAGLTGTE-IVY 327 Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274 +LYCG G+ + ++R +V+ +E+ K +++ A + + Sbjct: 328 DLYCGTGSIGIFVSRQAGKVVGIELIKEAIDDA------------------IENAARNNV 369 Query: 275 REREFNRLKDIDIHSYRF-------KTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNP 325 +F +DI + F + DPPR+G+ + V + A P I+Y+SCNP Sbjct: 370 NNAQFYAGDVVDICNDAFFAQHGQPDVVITDPPRAGMHEKLVNKLLEIAAPRIVYVSCNP 429 Query: 326 DSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 + RDL++L ++++++ D FP+T H+E VLL ++ Sbjct: 430 ATQARDLALLDVMYSVKKIQPVDMFPHTHHIENVVLLEKR 469 >gi|323345673|ref|ZP_08085896.1| TrmA family RNA methyltransferase [Prevotella oralis ATCC 33269] gi|323093787|gb|EFZ36365.1| TrmA family RNA methyltransferase [Prevotella oralis ATCC 33269] Length = 475 Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 55/185 (29%), Positives = 86/185 (46%), Gaps = 18/185 (9%) Query: 186 SFTQPNAGINVHMLEWV--LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 SF Q N H+ LA+ G + + +LY G G + +A +V+ +E + Sbjct: 301 SFYQTNTEQAFHLYSVARELASLTGKEL-VYDLYTGTGTIANFVAGRAKKVIGIEYVPEA 359 Query: 244 VEAARYNIAANHVNNVKIVRMSSKE-FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302 +E A+ N A N + N K+ T RE + I DPPR+ Sbjct: 360 IEDAKVNSAVNRIENTLFFAGDMKDILTDDFIREHG------------QPDVIITDPPRA 407 Query: 303 GL-DDATVGMVQAYPH-ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360 G+ D +++A P I+Y+SCNP + RDL+ L + ++ + D FP+T H+E V Sbjct: 408 GMHTDVIQTILRANPQRIVYVSCNPATQARDLAALDMQYKVDIVQPVDMFPHTPHVENVV 467 Query: 361 LLVRK 365 LL RK Sbjct: 468 LLTRK 472 >gi|153811043|ref|ZP_01963711.1| hypothetical protein RUMOBE_01434 [Ruminococcus obeum ATCC 29174] gi|149832931|gb|EDM88014.1| hypothetical protein RUMOBE_01434 [Ruminococcus obeum ATCC 29174] Length = 430 Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 60/217 (27%), Positives = 95/217 (43%), Gaps = 24/217 (11%) Query: 155 ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-- 212 K + + Y+++ L I+R SF Q N + + G+ G Sbjct: 230 GEKETVLYGKGYIEDELC----GHIFRISSKSFYQVNTAQTEKLYTKAIELA-GLTGKER 284 Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G L+ + V++VE+ +V+ A N N + NV + + F + Sbjct: 285 VIDAYCGIGTIGLIASDKAKEVISVELNPDAVKDAIVNAKRNGIKNVHFYQNDAGVFMRQ 344 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330 M E E D+ +F+DPPRSG D+ + V ++Y+SC+P +L R Sbjct: 345 MADEGE-----SADV-------VFMDPPRSGSDEKFLSSVVTLNPKRVVYVSCDPTTLAR 392 Query: 331 DLSILSTTHTIERLAL--FDQFPYTRHMECGVLLVRK 365 DL L T H + D FP T H+E LL RK Sbjct: 393 DLKYL-TKHGYSAVTAVPVDMFPATEHVETVCLLSRK 428 >gi|160933694|ref|ZP_02081082.1| hypothetical protein CLOLEP_02555 [Clostridium leptum DSM 753] gi|156867571|gb|EDO60943.1| hypothetical protein CLOLEP_02555 [Clostridium leptum DSM 753] Length = 371 Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 51/162 (31%), Positives = 83/162 (51%), Gaps = 19/162 (11%) Query: 208 GIQGD--LLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRM 264 G+ G +++ YCG G LV A R +V+ VE+ + +V+ A N N ++N Sbjct: 212 GLTGSETVIDAYCGIGTIGLVAAKRGAKKVVGVELNRDAVKDAIENAKLNKLSNAWFCAG 271 Query: 265 SSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYIS 322 + EF M E+E D+ +F+DPPR+G D + ++ P ++YIS Sbjct: 272 DAGEFMLEMSLEKE-----PADV-------VFMDPPRAGSDRTFLSSLIALSPQKVVYIS 319 Query: 323 CNPDSLCRDLSILST--THTIERLALFDQFPYTRHMECGVLL 362 CNP++ RDL L++ + + R+ D FP+T H+E LL Sbjct: 320 CNPETQQRDLRYLTSKGPYRVTRIQPVDMFPHTNHVETVALL 361 >gi|313830386|gb|EFS68100.1| conserved domain protein [Propionibacterium acnes HL007PA1] gi|314955688|gb|EFT00090.1| conserved domain protein [Propionibacterium acnes HL027PA1] Length = 206 Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 63/221 (28%), Positives = 97/221 (43%), Gaps = 36/221 (16%) Query: 161 CLDRD-----YVDERLTVAGRTLIYRQIE-------NSFTQPNAGINVHMLEWVLAATKG 208 CL D D +L G T+ R + F Q + G + + V+ + + Sbjct: 5 CLSEDPEVSVIADGQLVAGGETMTARVGQRRWKVGAGGFWQVHPGAAEALADAVIGSLEP 64 Query: 209 IQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267 QGD L+LYCG G F+ +LA RV VE+++ +V AR N+ Sbjct: 65 QQGDEALDLYCGVGLFAGLLADRGVRVRGVEVSRQAVALARRNVPGGR------------ 112 Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNP 325 FT A R ER R+ + + + +DPPR G V + + P I +++C+P Sbjct: 113 -FT-AGRVERVLPRM------APKANIVVLDPPRKGAGKTVVQAVARTSPRAIAHVACDP 164 Query: 326 DSLCRDLSILSTTHTIER-LALFDQFPYTRHMECGVLLVRK 365 +L RDL + + R + FD FP T H+E +L K Sbjct: 165 AALARDLHLFDVNGYLPRSIRAFDVFPMTHHVEAVAILEPK 205 >gi|223935813|ref|ZP_03627728.1| RNA methyltransferase, TrmA family [bacterium Ellin514] gi|223895414|gb|EEF61860.1| RNA methyltransferase, TrmA family [bacterium Ellin514] Length = 440 Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 44/150 (29%), Positives = 79/150 (52%), Gaps = 15/150 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L+++YCG G FSL L + + VE+ + +++AAR N ++ N + V ++E Sbjct: 289 LVDVYCGVGFFSLELGDLVEGFVGVELDQLAIKAARRNAEKRNLKNGEFVTGRAEEMLPG 348 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSG-LDDATVGMVQAYPH-ILYISCNPDSLCR 330 + + S T+ +DPPR+G L ++ + Q P+ ++Y+SC+P ++ R Sbjct: 349 LMQR-----------FSPEATTVLIDPPRTGCLPESLELLRQTRPNQLIYVSCHPATMAR 397 Query: 331 DLSILSTTHTIERLALF--DQFPYTRHMEC 358 DL++L E + + D FP T H+EC Sbjct: 398 DLNVLCAEGVFELVKVIPCDMFPQTAHVEC 427 >gi|76154235|gb|AAX25727.2| SJCHGC06451 protein [Schistosoma japonicum] Length = 181 Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 52/171 (30%), Positives = 84/171 (49%), Gaps = 24/171 (14%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 LL++ CG G L LA+HF RV+ ++I ++E A+ N N + NV+ + +++ Sbjct: 23 LLDVCCGTGTIGLCLAKHFHRVIGIDICNSAIEDAKLNAQLNDIQNVEFIAGKAED---- 78 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH---ILYISCNPDSLC 329 M R N K D+ ++ VDPPR+GL ++ + +++ I+YISCN + Sbjct: 79 MLRNVIQNLPKSCDL------SVVVDPPRAGLHNSVIQILRNCKQINRIIYISCNMEYAV 132 Query: 330 RD--------LSILSTTHTIERLA-LFDQFPYTRHMECGVLLVRKPSGWHQ 371 + + T I +A D FP TRH E +LL R P W+ Sbjct: 133 GNFIYFAKPCFKKFTGTPFIPTMAEAVDIFPQTRHTEVILLLERIP--WNS 181 >gi|53713830|ref|YP_099822.1| RNA methyltransferase [Bacteroides fragilis YCH46] gi|60682048|ref|YP_212192.1| putative RNA methyltransferase [Bacteroides fragilis NCTC 9343] gi|253565800|ref|ZP_04843255.1| RNA methyltransferase [Bacteroides sp. 3_2_5] gi|265764175|ref|ZP_06092743.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides sp. 2_1_16] gi|52216695|dbj|BAD49288.1| RNA methyltransferase [Bacteroides fragilis YCH46] gi|60493482|emb|CAH08268.1| putative RNA methyltransferase [Bacteroides fragilis NCTC 9343] gi|251946079|gb|EES86486.1| RNA methyltransferase [Bacteroides sp. 3_2_5] gi|263256783|gb|EEZ28129.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides sp. 2_1_16] Length = 472 Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 56/183 (30%), Positives = 86/183 (46%), Gaps = 20/183 (10%) Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDLL--ELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 SF Q N+ + L V G+ GD L +LY G G + ++R +V+ +E + Sbjct: 301 SFYQTNSE-QAYNLYKVARDFAGLTGDELVYDLYTGTGTIANFVSRQARKVIGIEYVPEA 359 Query: 244 VEAARYNIAANHVNNVKIVRMSSKE-FTQAMRREREFNRLKDIDIHSY-RFKTIFVDPPR 301 +E A+ N N + N K+ TQ I+ Y R I DPPR Sbjct: 360 IEDAKVNAEINGIENTLFFAGDMKDILTQDF-------------INQYGRPDVIITDPPR 406 Query: 302 SGLDDATVGMVQ-AYPH-ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359 +G+ V ++ A P I+Y+SCNP + RDL +L + ++ + D FP+T H+E Sbjct: 407 AGMHQDVVDVILFAEPKRIVYVSCNPATQARDLQLLDVKYRVKAVQPVDMFPHTHHVENV 466 Query: 360 VLL 362 VLL Sbjct: 467 VLL 469 >gi|325297416|ref|YP_004257333.1| RNA methyltransferase, TrmA family [Bacteroides salanitronis DSM 18170] gi|324316969|gb|ADY34860.1| RNA methyltransferase, TrmA family [Bacteroides salanitronis DSM 18170] Length = 474 Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 58/203 (28%), Positives = 94/203 (46%), Gaps = 24/203 (11%) Query: 175 GRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGDLL--ELYCGNGNFS 224 G+ I+ ++E SF Q N+ + L V G+ G+ L +LY G G + Sbjct: 282 GKDHIFEEMEGLRFKVGPKSFYQTNSE-QAYNLYKVARDFAGLTGNELVYDLYTGTGTIA 340 Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284 ++R +V+ +E ++E A+ N N + N K+ +F R Sbjct: 341 NFVSRQAKKVIGIEYVPEAIEDAKVNSELNGIKNTLFYAGDMKDILT-----EDFIR--- 392 Query: 285 IDIHSYRFKTIFVDPPRSGL-DDATVGMVQAYPH-ILYISCNPDSLCRDLSILSTTHTIE 342 H R I DPPR+G+ D ++ A P I+Y+SCNP + RDL +L + ++ Sbjct: 393 --THG-RPDVIITDPPRAGMHGDVIQVILAAEPERIVYVSCNPATQARDLQLLDVKYKVK 449 Query: 343 RLALFDQFPYTRHMECGVLLVRK 365 + D FP+T H+E VLL +K Sbjct: 450 AVQPVDMFPHTHHVENVVLLEKK 472 >gi|315084283|gb|EFT56259.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA [Propionibacterium acnes HL027PA2] Length = 393 Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 63/221 (28%), Positives = 97/221 (43%), Gaps = 36/221 (16%) Query: 161 CLDRD-----YVDERLTVAGRTLIYRQIE-------NSFTQPNAGINVHMLEWVLAATKG 208 CL D D +L G T+ R + F Q + G + + V+ + + Sbjct: 192 CLSEDPEVSVIADGQLVAGGETMTARVGQRRWKVGAGGFWQVHPGAAEALADAVIGSLEP 251 Query: 209 IQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267 QGD L+LYCG G F+ +LA RV VE+++ +V AR N+ Sbjct: 252 QQGDEALDLYCGVGLFAGLLADRGVRVRGVEVSRQAVALARRNVPGG------------- 298 Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNP 325 FT A R ER R+ + + + +DPPR G V + + P I +++C+P Sbjct: 299 RFT-AGRVERVLPRM------APKANIVVLDPPRKGAGKTVVQAVARTSPRAIAHVACDP 351 Query: 326 DSLCRDLSILSTTHTIER-LALFDQFPYTRHMECGVLLVRK 365 +L RDL + + R + FD FP T H+E +L K Sbjct: 352 AALARDLHLFDVNGYLPRSIRAFDVFPMTHHVEAVAILEPK 392 >gi|312868870|ref|ZP_07729056.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus oris PB013-T2-3] gi|311095610|gb|EFQ53868.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus oris PB013-T2-3] Length = 452 Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 47/163 (28%), Positives = 80/163 (49%), Gaps = 22/163 (13%) Query: 208 GIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265 G+ G +++ YCG G SL +A+H +V VEI ++ A++N + Sbjct: 305 GLDGSQTVIDAYCGIGTISLAVAKHAKQVYGVEIVPAAIADAKHN------------GIK 352 Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISC 323 + EF + E +F + + + + + VDPPR GL ++ + + P ++Y+SC Sbjct: 353 NAEFVVG-KAEDQFAKWQAAGL---KPDVVIVDPPRKGLAESLIEATGKMGPQKVIYVSC 408 Query: 324 NPDSLCRDLSILSTT--HTIERLALFDQFPYTRHMECGVLLVR 364 NP +L RD+ + H + + DQFP T H+E LL R Sbjct: 409 NPATLVRDIQRFAEVGYHVTKPIQPVDQFPQTTHVESVTLLER 451 >gi|297531277|ref|YP_003672552.1| RNA methyltransferase, TrmA family [Geobacillus sp. C56-T3] gi|297254529|gb|ADI27975.1| RNA methyltransferase, TrmA family [Geobacillus sp. C56-T3] Length = 467 Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 55/208 (26%), Positives = 94/208 (45%), Gaps = 21/208 (10%) Query: 155 ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWV--LAATKGIQGD 212 ++T++ +Y+ E L L + +F Q N V + + V AA G + Sbjct: 269 GDETEVLAGDEYIQETLG----DLSFELSSRAFFQLNPLQTVKLYDEVKKAAALTGTE-R 323 Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G L LAR V ++ ++E A+ N + N V ++ + Sbjct: 324 IVDAYCGVGTIGLWLARDAKEVRGMDTIPEAIEDAQNNAKKHGFTNTHYVVGKAEYWLPK 383 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330 + ++ I VDPPR G D A + ++ P ++Y+SCNP SL R Sbjct: 384 WVK------------GGWKPDVIIVDPPRVGCDRALLETILHVRPKTVVYVSCNPSSLAR 431 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMEC 358 DL L+ + ++ + D FP+T H+EC Sbjct: 432 DLDALAAQYRVDYIQPVDMFPHTAHVEC 459 >gi|123441809|ref|YP_001005793.1| 23S rRNA methyluridine methyltransferase [Yersinia enterocolitica subsp. enterocolitica 8081] gi|167012648|sp|A1JM74|RUMB_YERE8 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName: Full=23S rRNA(M-5-U747)-methyltransferase gi|122088770|emb|CAL11576.1| putative RNA methyltransferase [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 375 Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 48/155 (30%), Positives = 78/155 (50%), Gaps = 18/155 (11%) Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271 + +L+CG G F L A R+ +EI+ ++ AR + + NV + S +F Sbjct: 236 SMWDLFCGVGGFGLHCADTETRLTGIEISAEAIACARQSADQLGLKNVTFAALDSTQFAT 295 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLC 329 A E + +L + V+PPR G+ + Q P ILY SCN +++ Sbjct: 296 A---ETQVPQL------------VLVNPPRRGIGAQLCEYLSQMAPQFILYSSCNAETMA 340 Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 +D+S+L+ + IER+ LFD FP+T H E LL++ Sbjct: 341 KDISLLA-DYRIERVQLFDMFPHTAHYEVLSLLIK 374 >gi|73662203|ref|YP_300984.1| RNA methyltransferase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|72494718|dbj|BAE18039.1| putative RNA methyltransferase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 453 Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 44/153 (28%), Positives = 72/153 (47%), Gaps = 16/153 (10%) Query: 209 IQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266 +QG+ +L+ YCG G L +A V VE+ ++ A+ N N N V + Sbjct: 305 LQGEETVLDTYCGIGTIGLYMAPKAKHVYGVEVVPEAITDAQQNATINQFENTTFVCGKA 364 Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCN 324 +E + E R + VDPPR G D+ + +++ P I+YISCN Sbjct: 365 EEVILKWKSE------------GIRPDVVMVDPPRKGCDETFLKTLLELNPQKIVYISCN 412 Query: 325 PDSLCRDLSILSTTHTIERLALFDQFPYTRHME 357 P + RD +L+ + + ++ D FP+T H+E Sbjct: 413 PSTQQRDAQLLANQYKLTQITPVDMFPHTTHVE 445 >gi|322374343|ref|ZP_08048857.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus sp. C300] gi|321279843|gb|EFX56882.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus sp. C300] Length = 455 Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 48/156 (30%), Positives = 79/156 (50%), Gaps = 15/156 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ Y G G L +A+H V VE+ +VE ++ N A N++ N V +++ A Sbjct: 311 VIDAYSGIGTIGLSVAKHVKEVYGVEVIPEAVENSQKNAALNNITNAHYVCDTAE---NA 367 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV--GMVQAYPHILYISCNPDSLCR 330 MR N LK+ + I VDPPR GL ++ + I YISCN ++ R Sbjct: 368 MR-----NWLKE----GIQPTVILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMAR 418 Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVRK 365 D+ + + ++++ D FP T H+EC LLV++ Sbjct: 419 DIKLYQELGYELKKVQPVDLFPQTHHVECVSLLVKR 454 >gi|301163521|emb|CBW23072.1| putative RNA methyltransferase [Bacteroides fragilis 638R] Length = 472 Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 56/183 (30%), Positives = 86/183 (46%), Gaps = 20/183 (10%) Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDLL--ELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 SF Q N+ + L V G+ GD L +LY G G + ++R +V+ +E + Sbjct: 301 SFYQTNSE-QAYNLYKVARDFAGLTGDELVYDLYTGTGTIANFVSRQARKVIGIEYVPEA 359 Query: 244 VEAARYNIAANHVNNVKIVRMSSKE-FTQAMRREREFNRLKDIDIHSY-RFKTIFVDPPR 301 +E A+ N N + N K+ TQ I+ Y R I DPPR Sbjct: 360 IEDAKVNAEINGIENTLFFAGDMKDILTQDF-------------INQYGRPDVIITDPPR 406 Query: 302 SGLDDATVGMVQ-AYPH-ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359 +G+ V ++ A P I+Y+SCNP + RDL +L + ++ + D FP+T H+E Sbjct: 407 AGMHQDVVDVILFAEPKRIVYVSCNPATQARDLQLLDVKYRVKAVQPVDMFPHTHHVENV 466 Query: 360 VLL 362 VLL Sbjct: 467 VLL 469 >gi|218283642|ref|ZP_03489604.1| hypothetical protein EUBIFOR_02197 [Eubacterium biforme DSM 3989] gi|218215702|gb|EEC89240.1| hypothetical protein EUBIFOR_02197 [Eubacterium biforme DSM 3989] Length = 431 Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 44/154 (28%), Positives = 75/154 (48%), Gaps = 17/154 (11%) Query: 214 LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273 +++Y G G + +++H V+ VEI K +V+ A N NH+++ V + +F Sbjct: 290 IDMYAGTGTIGMAVSQHAKSVIGVEIVKEAVDNANDNTKMNHLDHCHYVCQDATDFAHDH 349 Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGL-DDATVGMVQAYP-HILYISCNPDSLCRD 331 + ++ ID+ IF+DPPR G+ ++ + P I+Y+SCNP +L RD Sbjct: 350 KEDK-------IDV-------IFIDPPRKGMTENGIKDTITMQPDKIVYVSCNPKTLSRD 395 Query: 332 LSILST-THTIERLALFDQFPYTRHMECGVLLVR 364 L I + E + D F T +EC L + Sbjct: 396 LKIFKEYGYQCEYVQPVDMFCQTIGLECVAKLTK 429 >gi|331700891|ref|YP_004397850.1| RNA methyltransferase, TrmA family [Lactobacillus buchneri NRRL B-30929] gi|329128234|gb|AEB72787.1| RNA methyltransferase, TrmA family [Lactobacillus buchneri NRRL B-30929] Length = 461 Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 95/392 (24%), Positives = 154/392 (39%), Gaps = 62/392 (15%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFR-------SEPIHYRMRAEFHIWHDGDD----- 57 Y +QL K D +RQ + +Q + F+ +P HYR +A F I HD + Sbjct: 96 YPKQLEFKRDVVRQSLEKYQPTGYRRFKLLPTIGMDDPTHYRNKATFQIRHDENGNTIAG 155 Query: 58 LY----HIMFDQQTK--------ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLF 105 LY H + D +T + MR M L I A E A I ++RA + Sbjct: 156 LYKARSHDVVDLKTSALQYPLTMKVMRAIVTMIDELGIPAYDEEKNAGIIKTVVVRAAI- 214 Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD 165 +DQ VT I + R++ L +Q + + I Sbjct: 215 -------ATDQVQVTFITQSKKLLKKHQLLERIKAELPEVVSVMQNVNPGRTSLI----- 262 Query: 166 YVDERLTVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGD--LLE 215 + DE + +AGR I + +F Q N + + + A ++G+ L++ Sbjct: 263 WGDEMIHLAGRETITEVLNGLKFDLSARAFLQANPAMTSILYDEAFKALD-LKGNEKLVD 321 Query: 216 LYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275 Y G G L +A+ V ++ +V+ A N N + N ++E Sbjct: 322 AYSGVGTIGLSVAKQVREVRGMDTIAEAVQDANANSVRNGIFNCLYEVGEAEEL------ 375 Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYPH-ILYISCNPDSLCRDLS 333 L + + + VDPPR+GL D+ + + P +YISCNP +L +DL Sbjct: 376 ------LPEWVDDGWTPTALIVDPPRTGLADSLIDTILDIVPKKFVYISCNPSTLAQDLV 429 Query: 334 ILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 L+ + +E + D P T EC V +K Sbjct: 430 KLTEKYNVEYIQSVDLMPQTSRCECVVKFKKK 461 >gi|313114891|ref|ZP_07800389.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Faecalibacterium cf. prausnitzii KLE1255] gi|310622768|gb|EFQ06225.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Faecalibacterium cf. prausnitzii KLE1255] Length = 461 Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 48/148 (32%), Positives = 72/148 (48%), Gaps = 15/148 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +L+ YCG G L A H +V+ VE+ + +V A N A H N VK R + + TQ Sbjct: 226 VLDAYCGIGTIGLTAADHAKQVVGVEVNREAVHDAIGN--AKH-NGVKNARFFAADATQW 282 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCR 330 + D+ IF+DPPR G + V A ++Y+SCNP +L R Sbjct: 283 IGEAAAAGERADV---------IFMDPPREGSTPQFIDSVARMAPKRVVYVSCNPATLAR 333 Query: 331 DLSILS-TTHTIERLALFDQFPYTRHME 357 DL +L+ + +E D FP++ H+E Sbjct: 334 DLELLTRKGYKVESSTPVDMFPHSEHIE 361 >gi|154685279|ref|YP_001420440.1| YfjO [Bacillus amyloliquefaciens FZB42] gi|154351130|gb|ABS73209.1| YfjO [Bacillus amyloliquefaciens FZB42] Length = 466 Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 40/157 (25%), Positives = 74/157 (47%), Gaps = 14/157 (8%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G + ++ + +++ K S++ A+ N + + N V +++ + Sbjct: 321 VVDAYCGVGTIGMWVSSGAKEIRGMDVIKESIDDAKKNAKKHGIKNAAYVTGTAEHWLPK 380 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCR 330 +E +R + VDPPR+G D + ++ +Y+SCNP +L + Sbjct: 381 WTKE------------GFRPDVVIVDPPRTGCDRTFLDTIKKVKPKRFVYVSCNPSTLAK 428 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRKPS 367 DL LS + +E + D FP T H+E LV K S Sbjct: 429 DLQTLSKDYRVEYIQPVDMFPQTAHVEAVAKLVLKSS 465 >gi|70726057|ref|YP_252971.1| hypothetical protein SH1056 [Staphylococcus haemolyticus JCSC1435] gi|68446781|dbj|BAE04365.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435] Length = 454 Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 44/155 (28%), Positives = 72/155 (46%), Gaps = 14/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +L+ YCG G L +A V VE+ +++ A+ N N N V ++E Sbjct: 311 VLDTYCGIGTIGLYMAPVAKHVYGVEVVPSAIKDAQQNATLNGFENTTFVCGKAEEVIIK 370 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330 +++ + + VDPPR G D+ + +++ P I+YISCNP + R Sbjct: 371 WKQQ------------GIKPDVVMVDPPRKGCDETFLQTLLKLNPKRIVYISCNPSTQQR 418 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 D IL + + ++ + D FP T H+E L RK Sbjct: 419 DAQILDSQYELQEITPVDMFPQTTHVETVALFERK 453 >gi|322828893|gb|EFZ32513.1| hypothetical protein TCSYLVIO_1138 [Trypanosoma cruzi] Length = 568 Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 60/196 (30%), Positives = 89/196 (45%), Gaps = 27/196 (13%) Query: 185 NSFTQPN-AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 SF Q N +G+ + + E A G + LL+L CG G L LA+H RV+ +E+ + + Sbjct: 375 TSFFQVNTSGMELLLCETAKVAALGPKTTLLDLCCGTGVIGLTLAKHVKRVIGIELVESA 434 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFV---DPP 300 V AR N N + N + + N L + D KT V DPP Sbjct: 435 VSDARQNAKRNDIANATFCSGRVEHLLPDI-----INSLPEED------KTDIVAILDPP 483 Query: 301 RSGLDDATVGMVQAYPHI---LYISCNPDSLCRDLSILSTTHT-------IERLALF--D 348 R+G+ + ++ P I +YISC +L RD L+ + T E +A F D Sbjct: 484 RAGVTPTVLKWIRGTPTIRRVVYISCEQKALERDCPSLTKSTTKAYRGLPFELVASFAVD 543 Query: 349 QFPYTRHMECGVLLVR 364 FP+T H+E +L R Sbjct: 544 LFPHTPHVEMVAVLAR 559 >gi|241948165|ref|XP_002416805.1| tRNA methyltransferase, putative; trna (uracil-5-)-methyltransferase, putative; trna(m5u54)methyltransferase, putative [Candida dubliniensis CD36] gi|223640143|emb|CAX44390.1| tRNA methyltransferase, putative [Candida dubliniensis CD36] Length = 552 Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 46/161 (28%), Positives = 77/161 (47%), Gaps = 21/161 (13%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L++ YCG+G FS+ + + +V+ VEI+ S+ A+ N N++ N + ++E Sbjct: 402 LVDAYCGSGLFSITCSSNVSKVIGVEISADSIRFAKRNAEKNNIKNANFIVGKAEEI--- 458 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330 ID + + ++ +DPPR G DD + + Y I+YISCN S R Sbjct: 459 ---------FASIDTPNNQ-TSVILDPPRKGCDDVFLNQLSDYNPAKIVYISCNVHSQAR 508 Query: 331 DL------SILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 D+ + + +E + FD FP T H+E +L K Sbjct: 509 DIEWFINNTANGNQYYVESIKGFDFFPQTHHVETVAVLSLK 549 >gi|70954218|ref|XP_746166.1| hypothetical protein [Plasmodium chabaudi chabaudi] gi|56526695|emb|CAH88281.1| conserved hypothetical protein [Plasmodium chabaudi chabaudi] Length = 733 Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 44/163 (26%), Positives = 80/163 (49%), Gaps = 19/163 (11%) Query: 206 TKGIQGDLLELYCGNGNFSLVLA---RHFD-RVLAVEIAKPSVEAARYNIAANHVNNVKI 261 K ++ + +L CG G S+ +A +H D ++ ++I + S+ +A N N + N K Sbjct: 572 NKNMKNYIFDLCCGTGTISICIANALKHEDTHIVGIDICEESIISANKNAQINKIKNYKF 631 Query: 262 VRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA---TVGMVQAYPHI 318 ++ +E +K+I + + VDPPRSGL + T+ + I Sbjct: 632 IKGRVEELFAG--------EIKNISQQNCNI-IVIVDPPRSGLAQSVLNTLSSIHPINQI 682 Query: 319 LYISCNPDSLCRDLS---ILSTTHTIERLALFDQFPYTRHMEC 358 +Y+SCNP +L +++ ++ I+ L D FP+T H+EC Sbjct: 683 IYVSCNPSTLINNVTNLLFMNECFKIKNLVFVDMFPHTYHLEC 725 >gi|86132735|ref|ZP_01051327.1| RNA methyltransferase, TrmA family [Dokdonia donghaensis MED134] gi|85816689|gb|EAQ37875.1| RNA methyltransferase, TrmA family [Dokdonia donghaensis MED134] Length = 471 Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 61/217 (28%), Positives = 98/217 (45%), Gaps = 28/217 (12%) Query: 163 DRDYVDERLTVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGDLL 214 D Y E + AGR I+ ++E SF Q N+ + L + G+ G+ L Sbjct: 268 DTIYDQEVICYAGRDHIFEEMEGLKFKINAKSFYQTNSE-QAYELYKITRDFAGLTGNEL 326 Query: 215 --ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +LY G G + +A+ +V+ VE ++ AA+ N N + N + F Sbjct: 327 VYDLYTGTGTIAQFVAKKAKKVIGVEAVPDAITAAKENAKLNGIENAEF-------FVGD 379 Query: 273 MRR--EREFNRLKDIDIHSYRFKTIFVDPPRSGL-DDATVGMVQAYPH-ILYISCNPDSL 328 M++ EF I H I DPPR G+ D ++ P I+Y+SCN + Sbjct: 380 MKKVFNSEF-----IATHG-EPDIIITDPPRDGMHKDVVDQILNISPQKIVYVSCNSATQ 433 Query: 329 CRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 RDL++L + + ++ D FP T H+E VLL ++ Sbjct: 434 ARDLALLDDVYKVTKVQPVDMFPQTHHVENVVLLEKR 470 >gi|327183079|gb|AEA31526.1| RNA methyltransferase [Lactobacillus amylovorus GRL 1118] Length = 448 Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 43/158 (27%), Positives = 74/158 (46%), Gaps = 19/158 (12%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ Y G G L +A+H V +E+ + +++ A+ N N ++N K ++E Sbjct: 305 VIDAYSGIGTIGLSVAKHVKAVRGIEVVRDAIKDAKDNAKLNDIDNAKYYLGKAEEIMPR 364 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD----DATVGMVQAYPHILYISCNPDSL 328 ++ + +FVDPPR GL DAT ++YISCNP ++ Sbjct: 365 WAKQ------------GLKTDVVFVDPPRKGLTPEFIDATAKT--GPEKVVYISCNPATM 410 Query: 329 CRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRK 365 RDL + + +R+ D FP T H+E +L +K Sbjct: 411 VRDLQLFQEQGYEFDRIDPVDMFPQTPHVEAVTVLTKK 448 >gi|327393298|dbj|BAK10720.1| 23S rRNA uracil-5- methyltransferase RumB [Pantoea ananatis AJ13355] Length = 380 Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 45/159 (28%), Positives = 79/159 (49%), Gaps = 18/159 (11%) Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271 + +L+CG G F L A + +EI+ +++ A+ + +NNV + S F Sbjct: 235 SMWDLFCGVGGFGLHCASPTLALTGIEISPEAIQCAQRSAQMLGLNNVSFAALDSTAFA- 293 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLC 329 E +R+ + + V+PPR G+ +A + A ++LY SCNP ++ Sbjct: 294 -----TERDRVPQL---------VLVNPPRRGIGEALCDYLSAMAPDYVLYSSCNPQTMA 339 Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRKPSG 368 +D++ L + + ++ LFD FP+T H E LL R+ SG Sbjct: 340 QDIARLKD-YEVTQVQLFDMFPHTAHFEVLTLLTRQRSG 377 >gi|295702483|ref|YP_003595558.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus megaterium DSM 319] gi|294800142|gb|ADF37208.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus megaterium DSM 319] Length = 457 Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 51/157 (32%), Positives = 76/157 (48%), Gaps = 17/157 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G SL LA+ +V VEI ++E A+ N N ++N EF Sbjct: 314 VIDAYCGIGTISLFLAQKAKKVYGVEIVPEAIEDAKRNAELNGIHNA--------EFEVG 365 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCR 330 N K + I VDPPR G D+A + ++ P ++Y+SC P +L R Sbjct: 366 EAEVVIPNWYK----QGIKADVIVVDPPRKGCDEALLNTIIDMKPKKVVYVSCGPATLAR 421 Query: 331 DLSILSTT--HTIERLALFDQFPYTRHMECGVLLVRK 365 DL+IL T+E + D FP+T H+E +L K Sbjct: 422 DLAILEKGGYETVE-VQPVDMFPHTTHVENVAVLTLK 457 >gi|315611699|ref|ZP_07886621.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis ATCC 49296] gi|315316114|gb|EFU64144.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis ATCC 49296] Length = 453 Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 43/155 (27%), Positives = 71/155 (45%), Gaps = 14/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L++ YCG G A+ + ++I ++E A+ N +N +++E Sbjct: 308 LIDAYCGVGTIGFAFAKKVKSLRGMDIIPEAIEDAKRNAQKMGFDNTHYEAGTAEEIIPR 367 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330 +E YR + VDPPR+GLDD + + Y ++Y+SCN +L R Sbjct: 368 WYKE------------GYRADALIVDPPRTGLDDKLLDTILTYVPEKMVYVSCNVSTLAR 415 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 DL L + ++ + D FP+T E V LV+K Sbjct: 416 DLVKLVKVYDLQYIQSVDMFPHTARTEAVVKLVKK 450 >gi|291616872|ref|YP_003519614.1| RumB [Pantoea ananatis LMG 20103] gi|291151902|gb|ADD76486.1| RumB [Pantoea ananatis LMG 20103] Length = 380 Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 45/159 (28%), Positives = 79/159 (49%), Gaps = 18/159 (11%) Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271 + +L+CG G F L A + +EI+ +++ A+ + +NNV + S F Sbjct: 235 SMWDLFCGVGGFGLHCASPTLALTGIEISPEAIQCAQRSAQMLGLNNVSFAALDSTAFA- 293 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLC 329 E +R+ + + V+PPR G+ +A + A ++LY SCNP ++ Sbjct: 294 -----TERDRVPQL---------VLVNPPRRGIGEALCDYLSAMAPDYVLYSSCNPQTMA 339 Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRKPSG 368 +D++ L + + ++ LFD FP+T H E LL R+ SG Sbjct: 340 QDIARLKD-YEVTQVQLFDMFPHTAHFEVLTLLTRQRSG 377 >gi|241889868|ref|ZP_04777166.1| 23S rRNA-methyltransferase RumA [Gemella haemolysans ATCC 10379] gi|241863490|gb|EER67874.1| 23S rRNA-methyltransferase RumA [Gemella haemolysans ATCC 10379] Length = 446 Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 43/155 (27%), Positives = 77/155 (49%), Gaps = 15/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G SL A+ +V +EI + +V A N N++ NV+ + S++ + Sbjct: 302 IIDAYCGIGTISLFAAKKVKKVYGIEIVEAAVLDACENAKNNNITNVEFLLGKSEDVIKK 361 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330 + + + + VDPPR G +++ + + A I+Y+SCNP +L R Sbjct: 362 LISQ------------DVKLDAVIVDPPRKGCEESFLRDLAAMDIEKIVYVSCNPATLAR 409 Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364 D+ I+ + + + D FP T H+E VLL + Sbjct: 410 DMEIMRGLGYKLGSVQPVDMFPGTYHVETVVLLSK 444 >gi|317050469|ref|YP_004111585.1| (Uracil-5)-methyltransferase [Desulfurispirillum indicum S5] gi|316945553|gb|ADU65029.1| (Uracil-5)-methyltransferase [Desulfurispirillum indicum S5] Length = 385 Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 58/183 (31%), Positives = 85/183 (46%), Gaps = 25/183 (13%) Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 F Q N + M V +A G + E YCG+G FS +A + A EI+ P+V+ Sbjct: 224 GFAQANPFVTALMASHVASACAGQH--VFEGYCGSGTFSRAIASGAASLEAWEISAPAVK 281 Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD 305 AR N + N + QA E+ I S R + + VDPPR+GL Sbjct: 282 LARRNC--RDLANTRF---------QAGDAEKS-------AIGSDR-QIVVVDPPRTGLG 322 Query: 306 DATVGMVQAY--PHILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTRHMECGVL 361 + A ++YISCNP ++ RDL L ++ T+ L FD +P+T H+E + Sbjct: 323 RGMTSRILASHAKKLIYISCNPATMARDLRFLQENSAFTLTHLEGFDMYPHTTHLEMLAM 382 Query: 362 LVR 364 L R Sbjct: 383 LER 385 >gi|315037788|ref|YP_004031356.1| RNA methyltransferase [Lactobacillus amylovorus GRL 1112] gi|325956263|ref|YP_004286873.1| RNA methyltransferase [Lactobacillus acidophilus 30SC] gi|312275921|gb|ADQ58561.1| RNA methyltransferase [Lactobacillus amylovorus GRL 1112] gi|325332828|gb|ADZ06736.1| RNA methyltransferase [Lactobacillus acidophilus 30SC] Length = 448 Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 43/158 (27%), Positives = 74/158 (46%), Gaps = 19/158 (12%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ Y G G L +A+H V +E+ + +++ A+ N N ++N K ++E Sbjct: 305 VIDAYSGIGTIGLSVAKHVKAVRGIEVVRDAIKDAKDNAKLNDIDNAKYYLGKAEEIMPR 364 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD----DATVGMVQAYPHILYISCNPDSL 328 ++ + +FVDPPR GL DAT ++YISCNP ++ Sbjct: 365 WAKQ------------GLKTDVVFVDPPRKGLTPEFIDATAKT--GPEKVVYISCNPATM 410 Query: 329 CRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRK 365 RDL + + +R+ D FP T H+E +L +K Sbjct: 411 VRDLQLFQEQGYEFDRIDPVDMFPQTPHVEAVTVLTKK 448 >gi|329116332|ref|ZP_08245049.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus parauberis NCFD 2020] gi|326906737|gb|EGE53651.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus parauberis NCFD 2020] Length = 452 Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 51/184 (27%), Positives = 88/184 (47%), Gaps = 16/184 (8%) Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 SF Q N + + + + + + D+ ++ Y G G L A+ +V VE+ + +V Sbjct: 280 SFYQVNTEMAEKLYQTAIDFSNLTKDDIVIDAYSGIGTIGLSFAKSVKKVYGVEVIEQAV 339 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AR N N + NV+ V ++ + +E IH I VDPPR GL Sbjct: 340 LDARKNAELNGIKNVQFVTDIAEAAMEKWSKE---------GIHP---NVILVDPPRKGL 387 Query: 305 DDATV-GMVQAYPH-ILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVL 361 ++ + V+ P I Y+SCNP ++ RD+ + + ++++ D FP T H+EC L Sbjct: 388 TESFIRASVEMNPEKITYVSCNPATMARDIKLYQELGYDLKKVQPVDLFPQTHHVECVSL 447 Query: 362 LVRK 365 L ++ Sbjct: 448 LEKR 451 >gi|238762100|ref|ZP_04623073.1| 23S rRNA (uracil-5-)-methyltransferase rumB [Yersinia kristensenii ATCC 33638] gi|238699828|gb|EEP92572.1| 23S rRNA (uracil-5-)-methyltransferase rumB [Yersinia kristensenii ATCC 33638] Length = 375 Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 47/156 (30%), Positives = 79/156 (50%), Gaps = 18/156 (11%) Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271 + +L+CG G F L A ++ +EI+ ++ AR + + + NV + S F Sbjct: 236 SMWDLFCGVGGFGLHCADPETQLTGIEISAEAIACARQSASQLGLKNVNFAALDSTRFAT 295 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLC 329 A E + +L + V+PPR G+ + Q P ILY SCN +++ Sbjct: 296 A---ETQVPQL------------VLVNPPRRGIGAELCEYLSQMAPEFILYSSCNAETMA 340 Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 +D+++L+ H IER+ LFD FP+T H E LL+++ Sbjct: 341 KDINLLADYH-IERVQLFDMFPHTAHYEVLSLLIKR 375 >gi|218289362|ref|ZP_03493596.1| RNA methyltransferase, TrmA family [Alicyclobacillus acidocaldarius LAA1] gi|218240468|gb|EED07649.1| RNA methyltransferase, TrmA family [Alicyclobacillus acidocaldarius LAA1] Length = 449 Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 62/214 (28%), Positives = 96/214 (44%), Gaps = 20/214 (9%) Query: 155 ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL- 213 N ++ R +++E + L R SF Q + M E V+ A + + D+ Sbjct: 251 GNAVEVFKGRTHLEEIMC----GLRVRWSPRSFLQVQTDMAERMYEHVVRAAEVRETDVV 306 Query: 214 LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273 ++ YCG G +L+LA R + VE + ++ AR N N + N + V Sbjct: 307 IDAYCGIGVITLLLAERAARAVGVEEVEDAITDARANAKLNRLRNTEFV---------VD 357 Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRD 331 R ER R + R + DPPR G+D A + ++Y+SCNP +L RD Sbjct: 358 RVERWLPRFVE---EGNRADVLVFDPPRKGVDRAAIEAAAEANVERLVYVSCNPATLERD 414 Query: 332 LSILST-THTIERLALFDQFPYTRHMECGVLLVR 364 L +L T + + FD FP T H+EC V + R Sbjct: 415 LRLLMTRGFYVADIQPFDMFPQTSHVECVVAMRR 448 >gi|323351306|ref|ZP_08086962.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis VMC66] gi|322122530|gb|EFX94241.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis VMC66] Length = 469 Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 49/155 (31%), Positives = 76/155 (49%), Gaps = 15/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +L+ Y G G L +A+H V VE+ +VE ++ N A N + N V ++E Q Sbjct: 321 VLDAYSGIGTIGLSVAKHVKEVYGVEVIPEAVENSQKNAAINGITNASYVCAPAEEAIQ- 379 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCR 330 N LK+ + I VDPPR GL ++ + + P I YISCN ++ R Sbjct: 380 -------NWLKE----GIQADVILVDPPRKGLTESFIKASISMEPKKITYISCNVATMAR 428 Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364 D+ + + ++++ D FP T H+E LLVR Sbjct: 429 DIKLYRELGYELKKVQPVDLFPQTHHVETVSLLVR 463 >gi|329964803|ref|ZP_08301826.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides fluxus YIT 12057] gi|328524654|gb|EGF51717.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides fluxus YIT 12057] Length = 511 Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 56/203 (27%), Positives = 96/203 (47%), Gaps = 24/203 (11%) Query: 172 TVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGDLL--ELYCGNG 221 T G+ I+ ++E SF Q N+ + L + G+ G+ L +LY G G Sbjct: 315 TFKGKDHIFEEMEGLRFKIGPKSFYQTNSE-QAYNLYKIARNFAGLTGNELVYDLYTGTG 373 Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281 + +++ +V+ +E ++E A+ N N ++N K+ M + N+ Sbjct: 374 TIANFVSKQARQVIGIEYVPEAIEDAKVNAEINGIHNTLFFAGDMKD----MLTQDFINQ 429 Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ-AYPH-ILYISCNPDSLCRDLSILSTTH 339 D+ I DPPR+G+ V ++ A P I+Y+SCNP + RDL +L T + Sbjct: 430 YGRPDV-------IITDPPRAGMHQDVVDVILFAEPKRIVYVSCNPATQARDLQLLDTKY 482 Query: 340 TIERLALFDQFPYTRHMECGVLL 362 ++ + D FP+T H+E VLL Sbjct: 483 KVKAVQPVDMFPHTHHVENVVLL 505 >gi|320546279|ref|ZP_08040599.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus equinus ATCC 9812] gi|320449056|gb|EFW89779.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus equinus ATCC 9812] Length = 450 Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 46/156 (29%), Positives = 71/156 (45%), Gaps = 14/156 (8%) Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271 ++++ YCG G A V ++I ++E A+ N +N + + Sbjct: 307 NIIDAYCGVGTIGFAFAGRVKSVRGMDIIPEAIEDAKKNAQRMGFDNT---------YYE 357 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLC 329 A R E + YR + VDPPR+GLDD + + Y ++Y+SCN +L Sbjct: 358 AGRAEDIIPKWYK---EGYRADALVVDPPRTGLDDKLLDTILKYQPAKMVYVSCNTATLA 414 Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 RDL LS + + + D FP+T E V LVRK Sbjct: 415 RDLVKLSKVYDVNYIQSVDMFPHTARTEAVVKLVRK 450 >gi|16803791|ref|NP_465276.1| hypothetical protein lmo1751 [Listeria monocytogenes EGD-e] gi|47095677|ref|ZP_00233284.1| RNA methyltransferase, TrmA family [Listeria monocytogenes str. 1/2a F6854] gi|224503324|ref|ZP_03671631.1| hypothetical protein LmonFR_12550 [Listeria monocytogenes FSL R2-561] gi|254900744|ref|ZP_05260668.1| hypothetical protein LmonJ_13049 [Listeria monocytogenes J0161] gi|254913771|ref|ZP_05263783.1| RNA methyltransferase [Listeria monocytogenes J2818] gi|254938158|ref|ZP_05269855.1| RNA methyltransferase [Listeria monocytogenes F6900] gi|255028262|ref|ZP_05300213.1| hypothetical protein LmonL_01654 [Listeria monocytogenes LO28] gi|50401632|sp|Q8Y6D6|Y1751_LISMO RecName: Full=Uncharacterized RNA methyltransferase lmo1751 gi|16411205|emb|CAC99829.1| lmo1751 [Listeria monocytogenes EGD-e] gi|47015962|gb|EAL06888.1| RNA methyltransferase, TrmA family [Listeria monocytogenes str. 1/2a F6854] gi|258610771|gb|EEW23379.1| RNA methyltransferase [Listeria monocytogenes F6900] gi|293591787|gb|EFG00122.1| RNA methyltransferase [Listeria monocytogenes J2818] Length = 453 Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 44/153 (28%), Positives = 75/153 (49%), Gaps = 15/153 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G+ SL LA+ V VEI +++ AR N N + N ++E + Sbjct: 310 VIDAYCGIGSISLCLAKKAKHVYGVEIVDQAIQDARANAELNELANTTFETGKAEEVIPS 369 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330 + + D+ + VDPPR G D+ + + A ++Y+SCNP +L R Sbjct: 370 WYKA---GIVADV---------LVVDPPRKGCDEKLLETILAMKPKKVVYVSCNPGTLAR 417 Query: 331 DLSILS-TTHTIERLALFDQFPYTRHMECGVLL 362 D+ IL+ + +++ D FP T H+E +L Sbjct: 418 DMKILTDGGYVAKKVQPVDMFPMTTHIEAVTVL 450 >gi|330752034|emb|CBL80546.1| RNA methyltransferase [uncultured Flavobacteria bacterium] Length = 484 Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 54/248 (21%), Positives = 116/248 (46%), Gaps = 23/248 (9%) Query: 123 YHRLLDDAWRECAIRLRDALHARKYQI--QLIGRANKTKICLDRDYVDERLTVAGRTLIY 180 + +LL D ++E R LH+ + + + + +K+ D + E L + Sbjct: 249 FSKLLQDIFKE---RFAGLLHSINDETGDRTLASSGSSKLISGEDKIIEELLGLNFEISM 305 Query: 181 RQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLARHFD--RVLAV 237 + + + + + ++E+ L + I + ++L+CG G +LA +++ V Sbjct: 306 KSFFQTNPKSAEKLYLKVIEYALEKKEAIDNTIVMDLFCGTGTIGQILASRSTNAKIIGV 365 Query: 238 EIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFV 297 +I ++ A+ N +NN++ ++ + + + + E+ + +TI + Sbjct: 366 DIVASAINDAKKNA---KINNIQGLKFFANDVGKFLNNHPEYKN---------KIRTIIL 413 Query: 298 DPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILS-TTHTIERLALFDQFPYTR 354 DP R+G+ T+ + I+Y+SCNP + RD +L + I++++L DQFP+T Sbjct: 414 DPARAGIAPKTLLKIININADRIVYVSCNPATQARDTEVLILNNYKIKKISLVDQFPHTA 473 Query: 355 HMECGVLL 362 H+E VL Sbjct: 474 HIETVVLF 481 >gi|282853991|ref|ZP_06263328.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA [Propionibacterium acnes J139] gi|282583444|gb|EFB88824.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA [Propionibacterium acnes J139] gi|314981068|gb|EFT25162.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA [Propionibacterium acnes HL110PA3] gi|315091893|gb|EFT63869.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA [Propionibacterium acnes HL110PA4] gi|315103395|gb|EFT75371.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA [Propionibacterium acnes HL050PA2] Length = 393 Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 63/221 (28%), Positives = 96/221 (43%), Gaps = 36/221 (16%) Query: 161 CLDRD-----YVDERLTVAGRTLI-------YRQIENSFTQPNAGINVHMLEWVLAATKG 208 CL D D +L G T+ ++ F Q + G + + V+ K Sbjct: 192 CLSEDPEVSVIADGQLVAGGETMTAHVGQRRWKVGAGGFWQMHPGAAEALADAVIGGLKP 251 Query: 209 IQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267 QGD L+LYCG G F+ +LA RV VE+++ +V AR N+ Sbjct: 252 QQGDEALDLYCGVGLFAGLLADRGVRVRGVEVSRQAVALARRNVPGG------------- 298 Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNP 325 FT A R ER R+ + + + +DPPR G V + + P I +++C+P Sbjct: 299 RFT-AGRVERVLPRM------APKANIVVLDPPRRGAGKTVVQAVARTSPRAIAHVACDP 351 Query: 326 DSLCRDLSILSTTHTIER-LALFDQFPYTRHMECGVLLVRK 365 +L RDL + + R + FD FP T H+E +L K Sbjct: 352 AALARDLHLFDVNGYLPRSIRAFDVFPMTHHVEAVAILEPK 392 >gi|255019188|ref|ZP_05291314.1| hypothetical protein LmonF_18146 [Listeria monocytogenes FSL F2-515] Length = 176 Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 44/153 (28%), Positives = 75/153 (49%), Gaps = 15/153 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G+ SL LA+ V VEI +++ AR N N + N ++E + Sbjct: 33 VIDAYCGIGSISLCLAKKAKHVYGVEIVDQAIQDARANAELNELANTTFETGKAEEVIPS 92 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330 + + D+ + VDPPR G D+ + + A ++Y+SCNP +L R Sbjct: 93 WYKA---GIVADV---------LVVDPPRKGCDEKLLETILAMKPKKVVYVSCNPGTLAR 140 Query: 331 DLSILS-TTHTIERLALFDQFPYTRHMECGVLL 362 D+ IL+ + +++ D FP T H+E +L Sbjct: 141 DMKILTDGGYVAKKVQPVDMFPMTTHIEAVTVL 173 >gi|315656641|ref|ZP_07909528.1| TrmA family RNA methyltransferase [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315492596|gb|EFU82200.1| TrmA family RNA methyltransferase [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 504 Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 61/205 (29%), Positives = 97/205 (47%), Gaps = 16/205 (7%) Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSL 225 V E + V+ T YR SF Q + + + A I+G + ELY G+G FSL Sbjct: 216 VRETVHVSDLTFTYRIFSGSFWQTDRRAPAILAAALRDALGQIEGFEAWELYSGSGLFSL 275 Query: 226 VLARHFD---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282 LA+ R+ VE P+ ++A YN+A + V++ R + + + R + Sbjct: 276 FLAQGLGAKGRLTTVEGDGPATKSAAYNLAKAGFDQVEVRR---GDVSPQLLRSLPMGEM 332 Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA-YPHILYI-SCNPDSLCRDLSIL-STTH 339 + + DPPRSGL A + A +P ++ + SC+P S RDL + + Sbjct: 333 VS------QGTLVVADPPRSGLGKAVARAICAQHPDLVALFSCDPVSCARDLETMRQLGY 386 Query: 340 TIERLALFDQFPYTRHMECGVLLVR 364 ++ +FD FPYT H+E VLL + Sbjct: 387 RVKTWRVFDLFPYTSHVETIVLLSK 411 >gi|227875491|ref|ZP_03993631.1| tRNA (uracil-5-)-methyltransferase [Mobiluncus mulieris ATCC 35243] gi|227843827|gb|EEJ53996.1| tRNA (uracil-5-)-methyltransferase [Mobiluncus mulieris ATCC 35243] Length = 416 Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 61/192 (31%), Positives = 89/192 (46%), Gaps = 14/192 (7%) Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHFD---RVL 235 YR +SF Q + ++E +LA I G ++LELY G+G FS+ LA R+ Sbjct: 232 YRIFASSFWQTDYRAPAVLVEALLAGVGDISGFEVLELYAGSGLFSVFLAEAIGDSGRLT 291 Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295 VE + +V++A YN+ + + S E R F R D R + Sbjct: 292 TVEGDRVAVKSAGYNLQHAGFEDTR----SRVERAAVSAR---FLRGLDFGQRFMRGTLV 344 Query: 296 FVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLSILS-TTHTIERLALFDQFPY 352 DPPRSGL G + + ISC+P S RDL L + ++ +FD FPY Sbjct: 345 VADPPRSGLGRDVAGAICGLEPDLVALISCDPVSCARDLEALRRGGYRLQSFRVFDLFPY 404 Query: 353 TRHMECGVLLVR 364 T+H+E +L R Sbjct: 405 TQHVEVLSVLGR 416 >gi|317154458|ref|YP_004122506.1| TrmA family RNA methyltransferase [Desulfovibrio aespoeensis Aspo-2] gi|316944709|gb|ADU63760.1| RNA methyltransferase, TrmA family [Desulfovibrio aespoeensis Aspo-2] Length = 465 Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 66/228 (28%), Positives = 102/228 (44%), Gaps = 21/228 (9%) Query: 142 LHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEW 201 +H+ + + + K L +V+ERL R + YR N+F Q N G + Sbjct: 248 VHSTRVKRTTVAFGEKIVYSLGNAFVEERLARGEREVRYRLSPNAFFQTNTGGASELFGT 307 Query: 202 V-----LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV 256 V L+ T LL+LYCG G + LA RV+ E ++ +V AR + N + Sbjct: 308 VAEFCALSDTH----VLLDLYCGTGAIGIYLAGEAGRVIGYEQSEEAVTKARESARLNGL 363 Query: 257 NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY- 315 N V S ++ F D + VDPPRSG+ + T + A Sbjct: 364 TNCSFVSGSLEQGIPG------FAGSGD----QAVPDVVVVDPPRSGMHEKTAEALLALG 413 Query: 316 -PHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362 P I+ +SC+P +L RD+ L+ + + R+ D FP+T H+E LL Sbjct: 414 APRIVAVSCDPATLARDVKRLADRYHVTRVRAVDMFPHTHHIETVALL 461 >gi|224499529|ref|ZP_03667878.1| hypothetical protein LmonF1_07452 [Listeria monocytogenes Finland 1988] Length = 453 Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 44/153 (28%), Positives = 75/153 (49%), Gaps = 15/153 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G+ SL LA+ V VEI +++ AR N N + N ++E + Sbjct: 310 VIDAYCGIGSISLCLAKKAKHVYGVEIVDQAIQDARANAELNELANTTFETGKAEEVIPS 369 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330 + + D+ + VDPPR G D+ + + A ++Y+SCNP +L R Sbjct: 370 WYKA---GIVADV---------LVVDPPRKGCDEKLLETILAMKPKKVVYVSCNPGTLAR 417 Query: 331 DLSILS-TTHTIERLALFDQFPYTRHMECGVLL 362 D+ IL+ + +++ D FP T H+E +L Sbjct: 418 DMKILTDGGYVAKKVQPVDMFPMTTHIEAVTVL 450 >gi|327470743|gb|EGF16199.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis SK330] Length = 469 Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 48/155 (30%), Positives = 73/155 (47%), Gaps = 15/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +L+ Y G G L +A+H V VE+ +VE +R N N + N V ++E Q Sbjct: 321 VLDAYSGIGTIGLSVAKHVKEVYGVEVIPEAVENSRKNAEINGIANASYVCAPAEEAIQD 380 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCR 330 +E + I VDPPR GL ++ + V P I YISCN ++ R Sbjct: 381 WLKE------------GIQADVILVDPPRKGLTESFIKASVSMEPKKITYISCNVATMAR 428 Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364 D+ + + ++++ D FP T H+E LLVR Sbjct: 429 DIKLYQELGYELKKVQPVDLFPQTHHVEAVSLLVR 463 >gi|313792112|gb|EFS40213.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA [Propionibacterium acnes HL110PA1] gi|314976067|gb|EFT20162.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA [Propionibacterium acnes HL045PA1] gi|315098565|gb|EFT70541.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA [Propionibacterium acnes HL059PA2] Length = 393 Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 63/221 (28%), Positives = 97/221 (43%), Gaps = 36/221 (16%) Query: 161 CLDRD-----YVDERLTVAGRTLIYRQIE-------NSFTQPNAGINVHMLEWVLAATKG 208 CL D D +L G T+ R + F Q + G + + V+ + + Sbjct: 192 CLSEDPEVSVIADGQLVAGGETMTARVGQRRWKVGAGGFWQVHPGAAEALADAVIGSLEP 251 Query: 209 IQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267 QGD L+LYCG G F+ +LA RV VE+++ +V AR N+ Sbjct: 252 QQGDEALDLYCGVGLFAGLLADRGVRVRGVEVSRQAVALARRNVPGG------------- 298 Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNP 325 FT A R ER R+ + + + +DPPR G V + + P I +++C+P Sbjct: 299 RFT-AGRVERVLPRM------APKANIVVLDPPRKGAGKTVVQAVARTSPRAIAHVACDP 351 Query: 326 DSLCRDLSILSTTHTIER-LALFDQFPYTRHMECGVLLVRK 365 +L RDL + + R + FD FP T H+E +L K Sbjct: 352 AALARDLHLFDVNGYLPRSIRAFDVFPMTHHVEAVAILEPK 392 >gi|302879059|ref|YP_003847623.1| RNA methyltransferase, TrmA family [Gallionella capsiferriformans ES-2] gi|302581848|gb|ADL55859.1| RNA methyltransferase, TrmA family [Gallionella capsiferriformans ES-2] Length = 435 Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 74/286 (25%), Positives = 127/286 (44%), Gaps = 20/286 (6%) Query: 85 ALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHA 144 A +IE +AT+ +R KL QI+ + +V I L E A+R H Sbjct: 165 ASLIEPLATLLAGLSIRDKLPQIEVAVGEHVYVLVLRIMAPL--SCEDEAALRAFADQHV 222 Query: 145 RKYQIQLIGRANKTKI-CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL 203 ++ +Q G LD + L G + + E FTQ N+ +N M+ + Sbjct: 223 VQFWLQTKGPETVVPFYPLDAPELTYSLPEFGVVMPFAPGE--FTQVNSQLNRVMISRAM 280 Query: 204 AATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262 +G+ +++ +CG GNF+L +AR +V +E + V+ A N A+NH++ Sbjct: 281 RLLNPQKGERIVDFFCGLGNFTLPIARSGAQVTGIEGSDALVKRAAQNAASNHLS----- 335 Query: 263 RMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILY 320 + F+ E + L + RF +DPPR G + + A I+Y Sbjct: 336 --VNTAFSARNLFEMDEAALAALG----RFDKWLIDPPRDGAMELVKSITPEIAPDLIVY 389 Query: 321 ISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 +SCNP +L RD + ++ + ++ + + FP T H+E + VR Sbjct: 390 VSCNPATLARDAAELVLRGYVLKSAGVMNMFPQTSHVESIAVFVRS 435 >gi|157369893|ref|YP_001477882.1| 23S rRNA methyluridine methyltransferase [Serratia proteamaculans 568] gi|167012643|sp|A8GCB4|RUMB_SERP5 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName: Full=23S rRNA(M-5-U747)-methyltransferase gi|157321657|gb|ABV40754.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Serratia proteamaculans 568] Length = 375 Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 56/187 (29%), Positives = 85/187 (45%), Gaps = 25/187 (13%) Query: 185 NSFTQPNAGINVHML----EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240 SF Q N + + +WV A + +L+CG G F L A R+ +EI+ Sbjct: 208 QSFFQTNPQVAAELYATARDWVRALAID---SMWDLFCGVGGFGLHCALPETRLTGIEIS 264 Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300 ++ AR + + +V + S F A E +L + V+PP Sbjct: 265 AEAIACARQSAKTLGLQHVDFQALDSTRFATA---EGSVPQL------------VLVNPP 309 Query: 301 RSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMEC 358 R G+ A + A +ILY SCN +S+ +D+ +L + IER+ LFD FP+T H E Sbjct: 310 RRGIGKALCDYLNQMAPGYILYSSCNAESMAKDIEMLPD-YRIERVQLFDMFPHTAHYEV 368 Query: 359 GVLLVRK 365 LLVR Sbjct: 369 LTLLVRN 375 >gi|116074874|ref|ZP_01472135.1| 23S rRNA methyltransferase/RumA [Synechococcus sp. RS9916] gi|116068096|gb|EAU73849.1| 23S rRNA methyltransferase/RumA [Synechococcus sp. RS9916] Length = 458 Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 54/176 (30%), Positives = 78/176 (44%), Gaps = 26/176 (14%) Query: 197 HMLEWVL--AATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAAN 254 H+ +W+L A T + ++ YCG G +L LA +VL +E+ K SV+ R N A N Sbjct: 302 HLSQWLLDRAGTTTV----IDAYCGIGTIALPLAAQGHQVLGLELHKASVDQGRLNAARN 357 Query: 255 HVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA 314 + V+ K E + VDPPR GLD V + Sbjct: 358 RLEQVRFKAGDVKALLADALPSHE---------------ALVVDPPRKGLDADVVDQILE 402 Query: 315 YPH--ILYISCNPDSLCRDLSILST---THTIERLALFDQFPYTRHMECGVLLVRK 365 P + Y+SC+P +L RDL L + +E + D FP T H+E VL+ R Sbjct: 403 CPPRWMAYLSCDPATLSRDLKRLCVPQGPYEVEGIHPVDFFPQTTHLESLVLMKRS 458 >gi|319902370|ref|YP_004162098.1| 23S rRNA m(5)U-1939 methyltransferase [Bacteroides helcogenes P 36-108] gi|319417401|gb|ADV44512.1| 23S rRNA m(5)U-1939 methyltransferase [Bacteroides helcogenes P 36-108] Length = 475 Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 57/203 (28%), Positives = 93/203 (45%), Gaps = 24/203 (11%) Query: 172 TVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGDLL--ELYCGNG 221 T G+ I+ ++E SF Q N+ + L + G+ GD L +LY G G Sbjct: 279 TFKGKDHIFEEMEGLRFKVGPKSFYQTNSE-QAYNLYKIARNFAGLTGDELVYDLYTGTG 337 Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281 + ++ RV+ +E ++E A+ N N + N K+ M + N+ Sbjct: 338 TIANFVSGKARRVIGIEYVPEAIEDAKVNAEINGIKNTLFFAGDMKD----MLTQDFINQ 393 Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ-AYPH-ILYISCNPDSLCRDLSILSTTH 339 D+ I DPPR+G+ V ++ A P I+Y+SCNP + RDL +L + Sbjct: 394 YGRPDV-------IITDPPRAGMHQDVVDVILFAEPKRIVYVSCNPATQARDLQLLDVKY 446 Query: 340 TIERLALFDQFPYTRHMECGVLL 362 ++ + D FP+T H+E VLL Sbjct: 447 KVKAVQPVDMFPHTHHVENVVLL 469 >gi|312144062|ref|YP_003995508.1| (Uracil-5)-methyltransferase [Halanaerobium sp. 'sapolanicus'] gi|311904713|gb|ADQ15154.1| (Uracil-5)-methyltransferase [Halanaerobium sp. 'sapolanicus'] Length = 389 Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 42/155 (27%), Positives = 76/155 (49%), Gaps = 18/155 (11%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + +LYCG+G S +A + ++ ++I + ++ AR N N+V+N + Sbjct: 249 IYDLYCGSGTISQSIADNAKKIYGIDIDEEAINRARENADLNNVSNTYYIAGDV------ 302 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCR 330 L+ I++ + + I +DPPR G++ + + ILYISCNP +L R Sbjct: 303 ---------LEKIEVLAEKPDLIIIDPPRPGINPKALNKIAQTNSKEILYISCNPKTLAR 353 Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364 DL + +++ D FP+T+H+E LL + Sbjct: 354 DLKEFKLHNYKLQKFKAVDMFPHTKHLEVISLLKK 388 >gi|292492481|ref|YP_003527920.1| RNA methyltransferase, TrmA family [Nitrosococcus halophilus Nc4] gi|291581076|gb|ADE15533.1| RNA methyltransferase, TrmA family [Nitrosococcus halophilus Nc4] Length = 446 Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 69/229 (30%), Positives = 98/229 (42%), Gaps = 35/229 (15%) Query: 148 QIQLIGRANKTKICLDRDYVDER--LTVAGRTLIYRQIEN--------SFTQPNAGINVH 197 Q+ GRA+ +I L ++ L L Y Q EN F Q N +N Sbjct: 223 QLADFGRAHGLQIYLQGGGIETLCLLWPESAELSYSQFENLEMVFLPTDFMQVNREVNSK 282 Query: 198 MLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV 256 M++ VLA + D +L+L+CG GNF+L LA V+ VE + V A N N + Sbjct: 283 MVQQVLALLELKSHDRVLDLFCGVGNFTLPLASSGAEVVGVEGSAGLVARATANAKHNQL 342 Query: 257 NNVKIVRMSSKEFTQAMRREREFNRLKDIDI--HSYR---FKTIFVDPPRSGLDDATVGM 311 NV E L ++D H++ F +DPPRSG A M Sbjct: 343 GNVNF----------------EVADLNELDWVRHAWAQNGFSKAVLDPPRSGALTAVQQM 386 Query: 312 VQ-AYPHILYISCNPDSLCRDLSILST--THTIERLALFDQFPYTRHME 357 I+Y+SCNP +L RD L + + + D FP+T H+E Sbjct: 387 SALQVQRIVYVSCNPATLARDAGELVNRQGYHLRYAGVMDMFPHTPHVE 435 >gi|289677066|ref|ZP_06497956.1| 23S rRNA 5-methyluridine methyltransferase [Pseudomonas syringae pv. syringae FF5] Length = 148 Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 47/153 (30%), Positives = 76/153 (49%), Gaps = 16/153 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS-SKEFTQ 271 +++L+CG GNF+L LA V+AVE VE A N +N ++NV+ + S+ T Sbjct: 5 VMDLFCGLGNFALPLAGLAREVVAVEGVATMVERAAVNAMSNDLHNVQFFQADLSQPLTH 64 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP-HILYISCNPDSLCR 330 A D + F + +DPPR G + + + +LY+SCNP +L R Sbjct: 65 A-------------DWAAEGFSAVLLDPPRDGAFEVVRQIRKTGARRLLYVSCNPATLAR 111 Query: 331 D-LSILSTTHTIERLALFDQFPYTRHMECGVLL 362 D + ++ + ++R + D FP T H+E L Sbjct: 112 DAVELIRQGYRLKRAGILDMFPQTAHVEAMALF 144 >gi|329999871|ref|ZP_08303541.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Klebsiella sp. MS 92-3] gi|328538190|gb|EGF64342.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Klebsiella sp. MS 92-3] Length = 375 Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 56/187 (29%), Positives = 90/187 (48%), Gaps = 25/187 (13%) Query: 185 NSFTQPNAGINVHML----EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240 SF Q N + + +WV A +Q + +L+CG G F L A R+ +EIA Sbjct: 207 QSFFQTNPAVASRLYATARDWVRALP--VQ-HMWDLFCGVGGFGLHCATPTMRLTGIEIA 263 Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300 ++ AR + A ++N+ + S +F E + +L + V+PP Sbjct: 264 PEAIACARQSAAQLGLSNLHFQALDSTQFAT---HEADAPQL------------VLVNPP 308 Query: 301 RSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMEC 358 R G+ + A P+I+Y SCN ++ D++ LS + +ER+ LFD FP+T H E Sbjct: 309 RRGIGAELCDYLSRMAPPYIIYSSCNARTMATDIARLS-GYRVERVQLFDMFPHTAHYEV 367 Query: 359 GVLLVRK 365 LLVR+ Sbjct: 368 LTLLVRE 374 >gi|313801935|gb|EFS43169.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA [Propionibacterium acnes HL110PA2] Length = 393 Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 63/221 (28%), Positives = 97/221 (43%), Gaps = 36/221 (16%) Query: 161 CLDRD-----YVDERLTVAGRTLIYRQIE-------NSFTQPNAGINVHMLEWVLAATKG 208 CL D D +L G T+ R + F Q + G + + V+ + + Sbjct: 192 CLSEDPEVSVIADGQLVAGGETMTARVGQRRWKVGAGGFWQVHPGAAEALADAVIGSLEP 251 Query: 209 IQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267 QGD L+LYCG G F+ +LA RV VE+++ +V AR N+ Sbjct: 252 QQGDEALDLYCGVGLFAGLLADRGVRVRGVEVSRQAVALARRNVPGG------------- 298 Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNP 325 FT A R ER R+ + + + +DPPR G V + + P I +++C+P Sbjct: 299 RFT-AGRVERVLPRM------APKANIVVLDPPRKGAGKTVVQAVARTSPRAIAHVACDP 351 Query: 326 DSLCRDLSILSTTHTIER-LALFDQFPYTRHMECGVLLVRK 365 +L RDL + + R + FD FP T H+E +L K Sbjct: 352 AALARDLHLFDVNGYLPRSIRAFDVFPMTHHVEAVAILEPK 392 >gi|34497387|ref|NP_901602.1| 23S rRNA (uracil-5-)-methyltransferase [Chromobacterium violaceum ATCC 12472] gi|50401501|sp|Q7NWP9|RUMA_CHRVO RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|34103243|gb|AAQ59606.1| probable RNA methyltransferase [Chromobacterium violaceum ATCC 12472] Length = 514 Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 53/182 (29%), Positives = 84/182 (46%), Gaps = 24/182 (13%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 FTQ N IN M+ L G+ + +++CG GNF+L +AR V +E ++P Sbjct: 268 TEFTQVNPQINAVMVARALKFLDPQPGERIADMFCGIGNFTLPIARSGAVVHGMEGSQPL 327 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY----RFKTIFVDP 299 V A N N + + + E L D+ S+ +F + VDP Sbjct: 328 VRRAVENATHNGLQD---------------KVSYEMANLFDVTEESFAALGKFDKMLVDP 372 Query: 300 PRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTT--HTIERLALFDQFPYTRH 355 PR G + + A I+Y+SCNP +L RD +L T +T++ + + FP+T H Sbjct: 373 PRDGAVQLLKAITEETAPQRIVYVSCNPSTLARDAGVLVHTKGYTLKAAGIINMFPHTAH 432 Query: 356 ME 357 +E Sbjct: 433 VE 434 >gi|322377743|ref|ZP_08052233.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus sp. M334] gi|321281508|gb|EFX58518.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus sp. M334] Length = 456 Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 45/155 (29%), Positives = 70/155 (45%), Gaps = 14/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L++ YCG G A+ + ++I ++E A+ N +N S++E Sbjct: 308 LIDAYCGVGTIGFAFAKKVKTLRGMDIIPEAIEDAKRNAKRMGFDNTHYEAGSAEEIIPR 367 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330 +E YR + VDPPR+GLDD + + Y ++YISCN +L R Sbjct: 368 WYKE------------GYRADALIVDPPRTGLDDKLLDTILTYVPEKMVYISCNVSTLAR 415 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 DL L + I + D FP+T E V L++K Sbjct: 416 DLVRLVEVYDIHYIQSVDMFPHTARTEAVVKLIKK 450 >gi|134302402|ref|YP_001122372.1| 23S rRNA 5-methyluridine methyltransferase [Francisella tularensis subsp. tularensis WY96-3418] gi|134050179|gb|ABO47250.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Francisella tularensis subsp. tularensis WY96-3418] Length = 449 Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 48/177 (27%), Positives = 88/177 (49%), Gaps = 15/177 (8%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 N FTQ N IN M++ + + D +++L+CG GNF+L +++H V+ VE Sbjct: 276 NDFTQVNNDINKKMIKRAIELLDISENDSIIDLFCGLGNFTLPISQHAKTVIGVEGELTM 335 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 V+ A+ N++ NV + ++ + FN ++ + + +DPPR+G Sbjct: 336 VKRAKETADNNNITNVNFY---AANLFESFEDKEWFN--------NFEYNKMLLDPPRAG 384 Query: 304 LDDATVGMVQ-AYPHILYISCNPDSLCRDLSILSTTHTIERLA--LFDQFPYTRHME 357 + + + I+Y+SC+ +L RD IL T + ++ + D FP+T H+E Sbjct: 385 AQEVCNNIEKFNVKRIVYVSCDTAALARDAGILVNTKGYKLISAGVMDMFPHTMHVE 441 >gi|314967862|gb|EFT11961.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA [Propionibacterium acnes HL037PA1] Length = 393 Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 63/221 (28%), Positives = 97/221 (43%), Gaps = 36/221 (16%) Query: 161 CLDRD-----YVDERLTVAGRTLIYRQIE-------NSFTQPNAGINVHMLEWVLAATKG 208 CL D D +L G T+ R + F Q + G + + V+ + + Sbjct: 192 CLSEDPEVSVIADGQLVAGGETMTARVGQRRWKVGAGGFWQVHPGAAEALADAVIGSLEP 251 Query: 209 IQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267 QGD L+LYCG G F+ +LA RV VE+++ +V AR N+ Sbjct: 252 QQGDEALDLYCGVGLFAGLLADRGVRVRGVEVSRQAVALARRNVPGG------------- 298 Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNP 325 FT A R ER R+ + + + +DPPR G V + + P I +++C+P Sbjct: 299 RFT-AGRVERVLPRM------APKANIVVLDPPRKGAGKTVVQAVARTSPRAIAHVACDP 351 Query: 326 DSLCRDLSILSTTHTIER-LALFDQFPYTRHMECGVLLVRK 365 +L RDL + + R + FD FP T H+E +L K Sbjct: 352 AALARDLHLFDVNGYLPRSIRAFDVFPMTHHVEAVAILEPK 392 >gi|323485341|ref|ZP_08090690.1| hypothetical protein HMPREF9474_02441 [Clostridium symbiosum WAL-14163] gi|323401377|gb|EGA93726.1| hypothetical protein HMPREF9474_02441 [Clostridium symbiosum WAL-14163] Length = 490 Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 59/215 (27%), Positives = 97/215 (45%), Gaps = 21/215 (9%) Query: 157 KTKICLDRDYVD----ERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD 212 KT + L R+ V+ +T + YR SF Q N + L G+ G+ Sbjct: 280 KTNVILGREVVNLYGPGYITDYIGNVKYRISPLSFYQVNP-VQTERLYGTALEYAGLTGE 338 Query: 213 --LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270 + +LYCG G SL L++ +V VEI ++E AR N N + NV+ ++E Sbjct: 339 ETVWDLYCGIGTISLFLSQKAKKVYGVEIVPQAIEDARENARLNGIENVEFFVGKAEEVL 398 Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSL 328 E + D+ I VDPPR G D + + ++Y+SC+ +L Sbjct: 399 PKQYEEDKV--YADV---------IVVDPPRKGCDPVCLDTIVMMGPKKVVYVSCDSATL 447 Query: 329 CRDLSILST-THTIERLALFDQFPYTRHMECGVLL 362 RD+ L + +ER++ D FP + H+E +++ Sbjct: 448 ARDVKYLEERGYWVERVSCVDMFPMSGHVESVIMM 482 >gi|170727692|ref|YP_001761718.1| 23S rRNA 5-methyluridine methyltransferase [Shewanella woodyi ATCC 51908] gi|226725394|sp|B1KPU0|RUMA_SHEWM RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|169813039|gb|ACA87623.1| RNA methyltransferase, TrmA family [Shewanella woodyi ATCC 51908] Length = 443 Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 56/227 (24%), Positives = 106/227 (46%), Gaps = 26/227 (11%) Query: 144 ARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML---- 199 A+++++ LI + N+ ++ + + + + +F Q N IN M+ Sbjct: 232 AQEHKVNLIVQGNEGELLVIKGPKELPFYTLNSDIKLSFTPGNFVQVNGEINRAMVDQAV 291 Query: 200 EWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVN 257 +W+ ++ D +L+L+CG GNFSL LA+ V+ VE V AR N + ++ Sbjct: 292 QWL-----DVKADERVLDLFCGVGNFSLPLAKSGAEVIGVEGVPEMVAQARINAKQSDLS 346 Query: 258 NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH 317 +V + + + +E ++ + +DP R+G ++ + + P Sbjct: 347 DVTFFHT---DLSADLSKEPWLGKV----------DKLLLDPARAGAFESLQWLKKMKPK 393 Query: 318 -ILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVLL 362 I+Y+SC+P SL RD +L + +++L L D FP T H+E L Sbjct: 394 SIVYVSCDPSSLARDSEPLLKHGYKLKKLGLVDMFPQTHHIEAMALF 440 >gi|294497118|ref|YP_003560818.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus megaterium QM B1551] gi|294347055|gb|ADE67384.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus megaterium QM B1551] Length = 457 Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 49/149 (32%), Positives = 73/149 (48%), Gaps = 17/149 (11%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G SL LA+ +V VEI ++E A+ N N ++N EF Sbjct: 314 VIDAYCGIGTISLFLAQKAKKVYGVEIVPEAIEDAKRNAELNGIHNA--------EFEVG 365 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCR 330 N K + I VDPPR G D+A + ++ P ++Y+SC P +L R Sbjct: 366 EAEVVIPNWYK----QGIKADVIVVDPPRKGCDEALLNTIIDMKPKKVVYVSCGPATLAR 421 Query: 331 DLSILSTT--HTIERLALFDQFPYTRHME 357 DL+IL T+E + D FP+T H+E Sbjct: 422 DLAILEKGGYETVE-VQPVDMFPHTTHVE 449 >gi|168205921|ref|ZP_02631926.1| 23S rRNA -methyltransferase RumA [Clostridium perfringens E str. JGS1987] gi|170662572|gb|EDT15255.1| 23S rRNA -methyltransferase RumA [Clostridium perfringens E str. JGS1987] Length = 451 Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 46/156 (29%), Positives = 75/156 (48%), Gaps = 18/156 (11%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + +LYCG G + A +V+ +E+ + + AA N N +NN + E + Sbjct: 311 VFDLYCGTGTIGQIAAGKASKVIGIELIEEAAMAANENAKLNGLNNCNFIAGDVAEVIKT 370 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330 ++ + + I +DPPRSG+ + V + P I+Y+SCNP +L Sbjct: 371 VKDKPDI---------------IILDPPRSGVHPKALDYVIKFNAPQIIYVSCNPKTLVT 415 Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRK 365 DL +L + + IE+ L D FP T H+E V L +K Sbjct: 416 DLKVLEAKEYEIEKTLLMDMFPNTPHVETVVKLNKK 451 >gi|148377925|ref|YP_001256801.1| putative RNA methyltransferase [Mycoplasma agalactiae PG2] gi|148291971|emb|CAL59363.1| Hypothetical RNA methyltransferase [Mycoplasma agalactiae PG2] Length = 446 Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 50/153 (32%), Positives = 75/153 (49%), Gaps = 18/153 (11%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +L+ YCG G SL LA+ +V +EI K +V A+ N N + N EF Sbjct: 296 VLDAYCGIGTISLFLAQKAKKVYGLEIVKEAVINAKENALDNSIYNT--------EFISG 347 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330 + +K ID + + T+ VDPPRSGL + ++ P I YISCNP ++CR Sbjct: 348 -------DVIKTIDSINEKIDTVVVDPPRSGLSSEFLNKIIDIKPEEIGYISCNPHTMCR 400 Query: 331 DLS-ILSTTHTIERLALFDQFPYTRHMECGVLL 362 D+ ++ + + L D F T H+E +L Sbjct: 401 DIDQLIKAGYELSFLRPCDMFSQTYHIEMVAVL 433 >gi|82595216|ref|XP_725756.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL] gi|23480877|gb|EAA17321.1| unnamed protein product [Plasmodium yoelii yoelii] Length = 732 Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 44/163 (26%), Positives = 82/163 (50%), Gaps = 19/163 (11%) Query: 206 TKGIQGDLLELYCGNGNFSLVLA---RHFD-RVLAVEIAKPSVEAARYNIAANHVNNVKI 261 K ++ + +L CG G S+ +A +H D ++ ++I + S+ +A N N + N K Sbjct: 571 NKNMKNYIFDLCCGTGTISICIANALKHEDMHIVGIDICEESIISANQNAQINKIKNYKF 630 Query: 262 VRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA-YP--HI 318 ++ +E +K+I + + VDPPRSGL + + + + +P I Sbjct: 631 IKGRVEELFAG--------EIKNISQQNCNI-IVIVDPPRSGLAQSVINTLSSIHPINQI 681 Query: 319 LYISCNPDSLCRDLS---ILSTTHTIERLALFDQFPYTRHMEC 358 +Y+SCNP +L +++ ++ I+ L D FP+T H+EC Sbjct: 682 IYVSCNPSTLINNVTNLLFMNEYFKIKNLVFVDMFPHTYHLEC 724 >gi|313764426|gb|EFS35790.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA [Propionibacterium acnes HL013PA1] gi|314915419|gb|EFS79250.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA [Propionibacterium acnes HL005PA4] gi|314920111|gb|EFS83942.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA [Propionibacterium acnes HL050PA3] gi|314931633|gb|EFS95464.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA [Propionibacterium acnes HL067PA1] gi|314958086|gb|EFT02189.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA [Propionibacterium acnes HL002PA1] gi|315101434|gb|EFT73410.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA [Propionibacterium acnes HL046PA1] gi|327450754|gb|EGE97408.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA [Propionibacterium acnes HL087PA3] gi|327453903|gb|EGF00558.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA [Propionibacterium acnes HL083PA2] gi|328754172|gb|EGF67788.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA [Propionibacterium acnes HL087PA1] gi|328754577|gb|EGF68193.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA [Propionibacterium acnes HL025PA2] Length = 393 Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 63/221 (28%), Positives = 97/221 (43%), Gaps = 36/221 (16%) Query: 161 CLDRD-----YVDERLTVAGRTLIYRQIE-------NSFTQPNAGINVHMLEWVLAATKG 208 CL D D +L G T+ R + F Q + G + + V+ + + Sbjct: 192 CLSEDPEVSVIADGQLVAGGETMTARVGQRRWKVGAGGFWQVHPGAAEALADAVIGSLEP 251 Query: 209 IQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267 QGD L+LYCG G F+ +LA RV VE+++ +V AR N+ Sbjct: 252 QQGDEALDLYCGVGLFAGLLADRGVRVRGVEVSRQAVALARRNVPGG------------- 298 Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNP 325 FT A R ER R+ + + + +DPPR G V + + P I +++C+P Sbjct: 299 RFT-AGRVERVLPRM------APKANIVVLDPPRKGAGKTVVQAVARTSPRAIAHVACDP 351 Query: 326 DSLCRDLSILSTTHTIER-LALFDQFPYTRHMECGVLLVRK 365 +L RDL + + R + FD FP T H+E +L K Sbjct: 352 AALARDLHLFDVNGYLPRSIRAFDVFPMTHHVEAVAILEPK 392 >gi|295397194|ref|ZP_06807297.1| 23S rRNA (uracil-5-)-methyltransferase [Aerococcus viridans ATCC 11563] gi|294974583|gb|EFG50307.1| 23S rRNA (uracil-5-)-methyltransferase [Aerococcus viridans ATCC 11563] Length = 464 Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 46/153 (30%), Positives = 75/153 (49%), Gaps = 15/153 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G +L LA+ V VE+ +V+ A+ N A N++NNV E QA Sbjct: 320 VVDAYCGIGTITLALAKKAKHVYGVEVVGDAVKMAKNNAAKNYINNVHF------ETGQA 373 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330 E+ + R GL+D + ++A P I+Y+SCNP ++ R Sbjct: 374 ETVMGEWVKAGVQPDVVVVDPP------RKGLEDTFIESTIEANPEKIVYVSCNPTTMAR 427 Query: 331 DLS-ILSTTHTIERLALFDQFPYTRHMECGVLL 362 D++ + + E++ D FP T H+EC VL+ Sbjct: 428 DIAKFVEAGYDFEQVQPLDMFPQTWHVECVVLM 460 >gi|168215741|ref|ZP_02641366.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium perfringens NCTC 8239] gi|182382137|gb|EDT79616.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium perfringens NCTC 8239] Length = 451 Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 46/156 (29%), Positives = 75/156 (48%), Gaps = 18/156 (11%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + +LYCG G + A +V+ +E+ + + AA N N +NN + E + Sbjct: 311 VFDLYCGTGTIGQIAAGKASKVIGIELIEEAAMAANENAKLNGLNNCNFIAGDVAEVIKT 370 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330 ++ + + I +DPPRSG+ + V + P I+Y+SCNP +L Sbjct: 371 VKDKPDI---------------IILDPPRSGVHPKALDYVIKFNAPQIIYVSCNPKTLVT 415 Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRK 365 DL +L + + IE+ L D FP T H+E V L +K Sbjct: 416 DLKVLEAKGYEIEKTLLMDMFPNTPHVETVVKLNKK 451 >gi|110801335|ref|YP_696793.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium perfringens ATCC 13124] gi|168208816|ref|ZP_02634441.1| 23S rRNA -methyltransferase RumA [Clostridium perfringens B str. ATCC 3626] gi|182624048|ref|ZP_02951836.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium perfringens D str. JGS1721] gi|110675982|gb|ABG84969.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium perfringens ATCC 13124] gi|170713002|gb|EDT25184.1| 23S rRNA -methyltransferase RumA [Clostridium perfringens B str. ATCC 3626] gi|177910941|gb|EDT73295.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium perfringens D str. JGS1721] Length = 451 Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 46/156 (29%), Positives = 75/156 (48%), Gaps = 18/156 (11%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + +LYCG G + A +V+ +E+ + + AA N N +NN + E + Sbjct: 311 VFDLYCGTGTIGQIAAGKASKVIGIELIEEAAMAANENAKLNGLNNCNFIAGDVAEVIKT 370 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330 ++ + + I +DPPRSG+ + V + P I+Y+SCNP +L Sbjct: 371 VKDKPDI---------------IILDPPRSGVHPKALDYVIKFNAPQIIYVSCNPKTLVT 415 Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRK 365 DL +L + + IE+ L D FP T H+E V L +K Sbjct: 416 DLKVLEAKGYEIEKTLLMDMFPNTPHVETVVKLNKK 451 >gi|238893918|ref|YP_002918652.1| 23S rRNA methyluridine methyltransferase [Klebsiella pneumoniae NTUH-K2044] gi|238546234|dbj|BAH62585.1| 23S rRNA (uracil-5-)-methyltransferase [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 375 Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 56/187 (29%), Positives = 90/187 (48%), Gaps = 25/187 (13%) Query: 185 NSFTQPNAGINVHML----EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240 SF Q N + + +WV A +Q + +L+CG G F L A R+ +EIA Sbjct: 207 QSFFQTNPAVASRLYATARDWVRALP--VQ-HMWDLFCGVGGFGLHCATPTMRLTGIEIA 263 Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300 ++ AR + A ++N+ + S +F E + +L + V+PP Sbjct: 264 PEAIACARQSAAQLGLSNLHFQALDSTQFAT---HEADAPQL------------VLVNPP 308 Query: 301 RSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMEC 358 R G+ + A P+I+Y SCN ++ D++ LS + +ER+ LFD FP+T H E Sbjct: 309 RRGIGAELCDYLSRMAPPYIIYSSCNARTMATDIARLS-GYRVERVQLFDMFPHTAHYEV 367 Query: 359 GVLLVRK 365 LLVR+ Sbjct: 368 LTLLVRE 374 >gi|50842542|ref|YP_055769.1| SAM-dependent methyltransferase related to tRNA [Propionibacterium acnes KPA171202] gi|289425337|ref|ZP_06427114.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA [Propionibacterium acnes SK187] gi|289427054|ref|ZP_06428770.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA [Propionibacterium acnes J165] gi|295130621|ref|YP_003581284.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA [Propionibacterium acnes SK137] gi|50840144|gb|AAT82811.1| SAM-dependent methyltransferase related to tRNA [Propionibacterium acnes KPA171202] gi|289154315|gb|EFD03003.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA [Propionibacterium acnes SK187] gi|289159523|gb|EFD07711.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA [Propionibacterium acnes J165] gi|291375509|gb|ADD99363.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA [Propionibacterium acnes SK137] gi|313772192|gb|EFS38158.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA [Propionibacterium acnes HL074PA1] gi|313807548|gb|EFS46035.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA [Propionibacterium acnes HL087PA2] gi|313810057|gb|EFS47778.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA [Propionibacterium acnes HL083PA1] gi|313812914|gb|EFS50628.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA [Propionibacterium acnes HL025PA1] gi|313815965|gb|EFS53679.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA [Propionibacterium acnes HL059PA1] gi|313818589|gb|EFS56303.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA [Propionibacterium acnes HL046PA2] gi|313820357|gb|EFS58071.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA [Propionibacterium acnes HL036PA1] gi|313822838|gb|EFS60552.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA [Propionibacterium acnes HL036PA2] gi|313825231|gb|EFS62945.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA [Propionibacterium acnes HL063PA1] gi|313827519|gb|EFS65233.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA [Propionibacterium acnes HL063PA2] gi|313833757|gb|EFS71471.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA [Propionibacterium acnes HL056PA1] gi|313838762|gb|EFS76476.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA [Propionibacterium acnes HL086PA1] gi|314925245|gb|EFS89076.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA [Propionibacterium acnes HL036PA3] gi|314959972|gb|EFT04074.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA [Propionibacterium acnes HL002PA2] gi|314962771|gb|EFT06871.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA [Propionibacterium acnes HL082PA1] gi|314973388|gb|EFT17484.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA [Propionibacterium acnes HL053PA1] gi|314978543|gb|EFT22637.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA [Propionibacterium acnes HL072PA2] gi|314983912|gb|EFT28004.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA [Propionibacterium acnes HL005PA1] gi|314988096|gb|EFT32187.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA [Propionibacterium acnes HL005PA2] gi|314989902|gb|EFT33993.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA [Propionibacterium acnes HL005PA3] gi|315080612|gb|EFT52588.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA [Propionibacterium acnes HL078PA1] gi|315085626|gb|EFT57602.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA [Propionibacterium acnes HL002PA3] gi|315088323|gb|EFT60299.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA [Propionibacterium acnes HL072PA1] gi|315095934|gb|EFT67910.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA [Propionibacterium acnes HL038PA1] gi|315105623|gb|EFT77599.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA [Propionibacterium acnes HL030PA1] gi|315108650|gb|EFT80626.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA [Propionibacterium acnes HL030PA2] gi|327326215|gb|EGE68005.1| putative RNA methyltransferase [Propionibacterium acnes HL096PA2] gi|327330284|gb|EGE72033.1| putative RNA methyltransferase [Propionibacterium acnes HL097PA1] gi|327331909|gb|EGE73646.1| putative RNA methyltransferase [Propionibacterium acnes HL096PA3] gi|327443112|gb|EGE89766.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA [Propionibacterium acnes HL013PA2] gi|327445894|gb|EGE92548.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA [Propionibacterium acnes HL043PA2] gi|327448125|gb|EGE94779.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA [Propionibacterium acnes HL043PA1] gi|327453170|gb|EGE99824.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA [Propionibacterium acnes HL092PA1] gi|328753441|gb|EGF67057.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA [Propionibacterium acnes HL020PA1] gi|328760824|gb|EGF74390.1| putative RNA methyltransferase [Propionibacterium acnes HL099PA1] gi|332675461|gb|AEE72277.1| SAM-dependent methyltransferase [Propionibacterium acnes 266] Length = 393 Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 63/221 (28%), Positives = 97/221 (43%), Gaps = 36/221 (16%) Query: 161 CLDRD-----YVDERLTVAGRTLIYRQIE-------NSFTQPNAGINVHMLEWVLAATKG 208 CL D D +L G T+ R + F Q + G + + V+ + + Sbjct: 192 CLSEDPEVSVIADGQLVAGGETMTARVGQRRWKVGAGGFWQVHPGAAEALADAVIGSLEP 251 Query: 209 IQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267 QGD L+LYCG G F+ +LA RV VE+++ +V AR N+ Sbjct: 252 QQGDEALDLYCGVGLFAGLLADRGVRVRGVEVSRQAVALARRNVPGG------------- 298 Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNP 325 FT A R ER R+ + + + +DPPR G V + + P I +++C+P Sbjct: 299 RFT-AGRVERVLPRM------APKANIVVLDPPRKGAGKTVVQAVARTSPRAIAHVACDP 351 Query: 326 DSLCRDLSILSTTHTIER-LALFDQFPYTRHMECGVLLVRK 365 +L RDL + + R + FD FP T H+E +L K Sbjct: 352 AALARDLHLFDVNGYLPRSIRAFDVFPMTHHVEAVAILEPK 392 >gi|315077986|gb|EFT50037.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA [Propionibacterium acnes HL053PA2] Length = 393 Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 63/221 (28%), Positives = 97/221 (43%), Gaps = 36/221 (16%) Query: 161 CLDRD-----YVDERLTVAGRTLIYRQIE-------NSFTQPNAGINVHMLEWVLAATKG 208 CL D D +L G T+ R + F Q + G + + V+ + + Sbjct: 192 CLSEDPEVSVIADGQLVAGGETMTARVGQRRWKVGAGGFWQVHPGAAEALADAVIGSLEP 251 Query: 209 IQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267 QGD L+LYCG G F+ +LA RV VE+++ +V AR N+ Sbjct: 252 QQGDEALDLYCGVGLFAGLLADRGVRVRGVEVSRQAVALARRNVPGG------------- 298 Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNP 325 FT A R ER R+ + + + +DPPR G V + + P I +++C+P Sbjct: 299 RFT-AGRVERVLPRM------APKANIVVLDPPRKGAGKTVVQAVARTSPRAIAHVACDP 351 Query: 326 DSLCRDLSILSTTHTIER-LALFDQFPYTRHMECGVLLVRK 365 +L RDL + + R + FD FP T H+E +L K Sbjct: 352 AALARDLHLFDVNGYLPRSIRAFDVFPMTHHVEAVAILEPK 392 >gi|254581166|ref|XP_002496568.1| ZYRO0D03124p [Zygosaccharomyces rouxii] gi|238939460|emb|CAR27635.1| ZYRO0D03124p [Zygosaccharomyces rouxii] Length = 591 Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 54/161 (33%), Positives = 78/161 (48%), Gaps = 23/161 (14%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK-IVRMSSKEFTQ 271 L++ YCG+G FS+ ++ +V VEI+ SV A N N V N K IV + K F Sbjct: 444 LVDAYCGSGLFSICSSKGVAKVTGVEISADSVSFAETNAKNNGVENCKFIVGKAEKLF-- 501 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLC 329 + ID + R ++ +DPPR G D+ + + + YP I+YISCN S Sbjct: 502 -----------ESIDTPNDR-TSVILDPPRKGCDELFMRQLSEYYPARIVYISCNVHSQA 549 Query: 330 RDLSIL------STTHTIERLALFDQFPYTRHMECGVLLVR 364 RD+ + IE L FD FP T H+E ++ R Sbjct: 550 RDVEFFLKDTERGKDYKIESLRGFDFFPQTHHVESVCVMSR 590 >gi|291545363|emb|CBL18471.1| 23S rRNA m(5)U-1939 methyltransferase [Ruminococcus sp. SR1/5] Length = 453 Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 58/185 (31%), Positives = 88/185 (47%), Gaps = 17/185 (9%) Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 SF Q N I L G+ G+ + +LYCG G SL LA+ V VEI + Sbjct: 281 SFFQVNP-IQTEKLYGKALEYAGLTGNETVWDLYCGIGTISLFLAQKAKFVRGVEIVPQA 339 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 ++ AR N N + NV+ ++E + R E N + I VDPPR G Sbjct: 340 IDNARENAKLNGIENVEFFVGKAEE---VLPRGYEKNGV--------YADVIVVDPPRKG 388 Query: 304 LDDATVGMV-QAYPH-ILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGV 360 D+ + + + P ++Y+SC+ +L RDL +L + + + R++ D FP H+E Sbjct: 389 CDEVLLNTILKMKPERVVYVSCDSATLARDLKVLCAEDYELVRVSTTDMFPQGVHVETVC 448 Query: 361 LLVRK 365 LL RK Sbjct: 449 LLSRK 453 >gi|227499478|ref|ZP_03929589.1| TrmA family RNA methyltransferase [Anaerococcus tetradius ATCC 35098] gi|227218540|gb|EEI83783.1| TrmA family RNA methyltransferase [Anaerococcus tetradius ATCC 35098] Length = 461 Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 63/286 (22%), Positives = 125/286 (43%), Gaps = 44/286 (15%) Query: 84 NALMIEMMATIRLE-PLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDAL 142 N +M+ ++ T + +R KLF + YL + + +YH +++D+ + I Sbjct: 215 NEIMVLLVTTSDMSFDSIRKKLF-LSYLLDSKLEGKIVSVYH-IINDSCADAVI------ 266 Query: 143 HARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWV 202 A ++ + ++Y+ E + L ++ SF QPN + + Sbjct: 267 ------------AEESHLIYGKEYIREEMM----GLSFKISPFSFFQPNIFTAEKLYQKA 310 Query: 203 LAATK-GIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261 + + ++L+LY G G + ++A +EI + +VE A+ N N ++N+ Sbjct: 311 FDLARIDEKMNVLDLYSGTGTITQLMALKAKHATGIEIVEEAVEKAKENALLNKIDNIDF 370 Query: 262 VRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHIL 319 + + L++I+ S R+ + +DPPR+G+ ++ + + Sbjct: 371 LCG---------------DVLEEIEKVSNRYDVVILDPPRAGIAPQSLEKILKMKVDKFV 415 Query: 320 YISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 YISCNP + + + I+ +FDQFP +RH+E LL R Sbjct: 416 YISCNPKTQLENFKDFIDQGFIIKDFEIFDQFPRSRHLESIALLTR 461 >gi|223044024|ref|ZP_03614064.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus capitis SK14] gi|222442567|gb|EEE48672.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus capitis SK14] Length = 455 Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 45/159 (28%), Positives = 71/159 (44%), Gaps = 22/159 (13%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +L+ YCG G L +A V VE+ +++ A+ N N +NN Sbjct: 311 VLDTYCGIGTIGLYMAPQAKHVYGVEVVPSAIKDAQENATKNQLNNTTF----------- 359 Query: 273 MRREREFNRLKDI----DIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPD 326 E + +D+ + + VDPPR G D+ + +++ P I+YISCNP Sbjct: 360 -----ECGKAEDVILEWKAQGIKPDVVMVDPPRKGCDETFIKTLLKLNPKRIVYISCNPS 414 Query: 327 SLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 + RD +LS + + + D FP T H+E L RK Sbjct: 415 TQQRDAQLLSDNYHLVEITPVDMFPQTTHIETVALFERK 453 >gi|152969447|ref|YP_001334556.1| 23S rRNA methyluridine methyltransferase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|150954296|gb|ABR76326.1| 23S rRNA (uracil-5-)-methyltransferase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 375 Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 56/187 (29%), Positives = 90/187 (48%), Gaps = 25/187 (13%) Query: 185 NSFTQPNAGINVHML----EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240 SF Q N + + +WV A +Q + +L+CG G F L A R+ +EIA Sbjct: 207 QSFFQTNPAVASRLYATARDWVRALP--VQ-HMWDLFCGVGGFGLHCATPTMRLTGIEIA 263 Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300 ++ AR + A ++N+ + S +F E + +L + V+PP Sbjct: 264 PEAIACARQSAAQLGLSNLHFQALDSTQFAT---HEADAPQL------------VLVNPP 308 Query: 301 RSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMEC 358 R G+ + A P+I+Y SCN ++ D++ LS + +ER+ LFD FP+T H E Sbjct: 309 RRGIGAELCDYLSRMAPPYIIYSSCNARTMATDIARLS-GYRVERVQLFDMFPHTAHYEV 367 Query: 359 GVLLVRK 365 LLVR+ Sbjct: 368 LTLLVRE 374 >gi|256752392|ref|ZP_05493252.1| RNA methyltransferase, TrmA family [Thermoanaerobacter ethanolicus CCSD1] gi|256748727|gb|EEU61771.1| RNA methyltransferase, TrmA family [Thermoanaerobacter ethanolicus CCSD1] Length = 453 Score = 73.2 bits (178), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 46/156 (29%), Positives = 75/156 (48%), Gaps = 15/156 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 ++++YCG G SL A+ V +E +VE A+ N N + NV+ + + Sbjct: 309 VIDVYCGIGTISLFAAQKAAFVYGIEAVYQAVEDAKRNAYINGIKNVEFISGDA------ 362 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330 E+ L D + + + +DPPR G D + + +++ P I+Y+SCNP +L R Sbjct: 363 ---EKVMPELADKGVKA---DVVIMDPPRKGCDTSVLEAVIKMNPKKIVYVSCNPSTLAR 416 Query: 331 DLSILS-TTHTIERLALFDQFPYTRHMECGVLLVRK 365 DL L + + D FPYT H+E L+ K Sbjct: 417 DLRYLEDNGYKTMEVQPVDMFPYTHHVESVCLITNK 452 >gi|164687720|ref|ZP_02211748.1| hypothetical protein CLOBAR_01362 [Clostridium bartlettii DSM 16795] gi|164603494|gb|EDQ96959.1| hypothetical protein CLOBAR_01362 [Clostridium bartlettii DSM 16795] Length = 453 Score = 73.2 bits (178), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 51/156 (32%), Positives = 74/156 (47%), Gaps = 18/156 (11%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L +LY G G VL++ +V +EI + +VEAA N N + + + + A Sbjct: 311 LYDLYSGTGTIGQVLSQKARKVYGIEIVEEAVEAANENAKLNGLTHCEFI---------A 361 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330 + N LK+ R I VDPPR G+ V + + I+YISCNP +L Sbjct: 362 GDVAKTVNSLKE------RPDIIIVDPPRPGIHKDAVRDISKFNAEEIIYISCNPKTLVV 415 Query: 331 DL-SILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 DL S + ++++ D FP T H E VLL RK Sbjct: 416 DLQGFESYGYEVKKVRCMDMFPNTPHCETVVLLQRK 451 >gi|159029832|emb|CAO90886.1| trmA [Microcystis aeruginosa PCC 7806] Length = 460 Score = 73.2 bits (178), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 60/217 (27%), Positives = 100/217 (46%), Gaps = 26/217 (11%) Query: 155 ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-- 212 +T RDY++E+ AG L Y+ ++F Q N + + + ++G+ Sbjct: 258 GTQTTTIAGRDYINEKF--AG--LTYQLAADTFFQINTEAAEALFSLICQKLE-LKGEEI 312 Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L++ YCG G F+L LA+ V+ +E S++ A+ N N + N + + Sbjct: 313 LIDAYCGIGTFTLPLAKRVKEVIGLESYSFSLDRAKINAQLNDITNTTFILGAV------ 366 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330 E+ +L + + I +DPPR G D + + ++Q I+YISC +L R Sbjct: 367 ---EKTLPQL------TVKPDIILLDPPRKGCDRSVLDSLLQLQSQRIVYISCQSATLAR 417 Query: 331 DLSILSTTHTIERLAL--FDQFPYTRHMECGVLLVRK 365 DL L T + L + D FP T H+EC L +K Sbjct: 418 DLQYLCKTGDYQLLEVQTADFFPQTPHVECAAFLRQK 454 >gi|16077869|ref|NP_388683.1| RNA methyltransferase [Bacillus subtilis subsp. subtilis str. 168] gi|221308637|ref|ZP_03590484.1| hypothetical protein Bsubs1_04463 [Bacillus subtilis subsp. subtilis str. 168] gi|221312961|ref|ZP_03594766.1| hypothetical protein BsubsN3_04414 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221317887|ref|ZP_03599181.1| hypothetical protein BsubsJ_04358 [Bacillus subtilis subsp. subtilis str. JH642] gi|221322160|ref|ZP_03603454.1| hypothetical protein BsubsS_04454 [Bacillus subtilis subsp. subtilis str. SMY] gi|321314530|ref|YP_004206817.1| putative RNA methyltransferase [Bacillus subtilis BSn5] gi|50401310|sp|O31545|YFJO_BACSU RecName: Full=Uncharacterized RNA methyltransferase yfjO gi|2633126|emb|CAB12631.1| putative RNA methyltransferase [Bacillus subtilis subsp. subtilis str. 168] gi|2780399|dbj|BAA24300.1| YfjO [Bacillus subtilis] gi|291483243|dbj|BAI84318.1| hypothetical protein BSNT_01338 [Bacillus subtilis subsp. natto BEST195] gi|320020804|gb|ADV95790.1| putative RNA methyltransferase [Bacillus subtilis BSn5] Length = 466 Score = 73.2 bits (178), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 41/157 (26%), Positives = 74/157 (47%), Gaps = 14/157 (8%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G + +A V +++ K S++ A+ N + + N V +++ + Sbjct: 321 VVDAYCGVGTIGMWVADGAKEVRGMDVIKESIDDAKKNAKKHGMANATYVTGTAEHWLPK 380 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCR 330 +E +R + VDPPR+G D + ++ +Y+SCNP +L + Sbjct: 381 WTKE------------GFRPDVVIVDPPRTGCDSTFLDTIKKVKPKRFVYVSCNPSTLAK 428 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRKPS 367 DL LS + ++ + D FP T H+E LV K S Sbjct: 429 DLQTLSKDYRVDYIQPVDMFPQTAHVEAVARLVLKSS 465 >gi|296815714|ref|XP_002848194.1| tRNA methyltransferase [Arthroderma otae CBS 113480] gi|238841219|gb|EEQ30881.1| tRNA methyltransferase [Arthroderma otae CBS 113480] Length = 545 Score = 73.2 bits (178), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 52/183 (28%), Positives = 86/183 (46%), Gaps = 21/183 (11%) Query: 190 PNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248 P + + +E +AAT + LL+ YCG+G F++VL+ F L +++A S++ AR Sbjct: 369 PEPKSDANPMESKVAATSNPKLKYLLDAYCGSGLFTIVLSGTFRSSLGIDVAASSIKCAR 428 Query: 249 YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDAT 308 N + V N + + KDI + + + +DPPR G D Sbjct: 429 ENAKLSKVPNTGFAAADAADL------------FKDIPYPADQ-TLLVIDPPRKGCDTNF 475 Query: 309 VGMVQAY--PHILYISCNPDSLCRDLSIL-----STTHTIERLALFDQFPYTRHMECGVL 361 + + AY +LY+SCN + RD+ +L + IE + FD FP T H+E + Sbjct: 476 LNQLLAYGPTRVLYVSCNVHTQARDVGVLIEGKNGVRYNIESIRGFDFFPQTSHVESVAV 535 Query: 362 LVR 364 L + Sbjct: 536 LTK 538 >gi|289705334|ref|ZP_06501730.1| 23S rRNA methyluridine methyltransferase [Micrococcus luteus SK58] gi|289557849|gb|EFD51144.1| 23S rRNA methyluridine methyltransferase [Micrococcus luteus SK58] Length = 403 Score = 73.2 bits (178), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 74/254 (29%), Positives = 106/254 (41%), Gaps = 24/254 (9%) Query: 129 DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIEN--- 185 DA R L D L AR ++ AN + DE + +AG + ++ Sbjct: 157 DALRAAVPGLLDDLAARGTPAAVV-SANLLPEHVALPEGDEEIVLAGGPTLTMRLNGVGL 215 Query: 186 -----SFTQPNA----GINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLA 236 F Q N G+ EWV A G+ +LYCG G F+ LAR R + Sbjct: 216 RLRPQGFFQTNTAVTEGLYATAAEWV--AEGGVPASAWDLYCGVGGFAFHLARAGVRDV- 272 Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE-REFNRLKDIDIHSYRFKTI 295 + + A A + VR S+ + T A+ E R + R + Sbjct: 273 WGMESSAEAVAAARETAAELGLADRVRFSAGDATSALSFEKRRAPEALSFEKRRARPDAV 332 Query: 296 FVDPPRSG----LDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFP 351 V+PPR G L DA G P +LY SCNP +L +DL+ + + + R+ +FD FP Sbjct: 333 VVNPPRRGIGAELADALEG--SGVPTVLYSSCNPATLAQDLARMPR-YRVARVQVFDMFP 389 Query: 352 YTRHMECGVLLVRK 365 TRH E LL R+ Sbjct: 390 QTRHAEVLTLLTRR 403 >gi|330720605|gb|EGG98867.1| RNA methyltransferase2C TrmA family [gamma proteobacterium IMCC2047] Length = 418 Score = 72.8 bits (177), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 72/243 (29%), Positives = 107/243 (44%), Gaps = 34/243 (13%) Query: 138 LRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE---------NSFT 188 LRD A+ + I L T L + D+RLT YR E FT Sbjct: 196 LRDFGEAQDFHIYLQPGGPDTVSKLWPEQGDDRLT-------YRLDEFDVEMRFHPMDFT 248 Query: 189 QPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFD-RVLAVEIAKPSVE 245 Q NA IN ++ L +Q D +L+L+CG GNF++ LAR V+ VE ++ VE Sbjct: 249 QVNADINRKVVHLALQYLD-VQPDERVLDLFCGLGNFTMPLARSTGAAVIGVEGSEAMVE 307 Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD 305 N N + NV+ + + TQ + F I +DPPRSG Sbjct: 308 RGFENARHNGLENVEFF---AADLTQDFEHQ---------PWSKQGFDKILIDPPRSGAL 355 Query: 306 DATVGMVQ-AYPHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLV 363 + + + I+Y+SCNP +L RD L+ +T++ + D FP T H+E + Sbjct: 356 EVIQKIARFKAKRIVYVSCNPATLARDAGELALHGYTLKAAGVLDMFPQTAHVESIAVFD 415 Query: 364 RKP 366 +P Sbjct: 416 YQP 418 >gi|310830057|ref|YP_003962414.1| hypothetical protein ELI_4517 [Eubacterium limosum KIST612] gi|308741791|gb|ADO39451.1| hypothetical protein ELI_4517 [Eubacterium limosum KIST612] Length = 454 Score = 72.8 bits (177), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 45/155 (29%), Positives = 72/155 (46%), Gaps = 18/155 (11%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + +LYCG G + VLA +V+ +E+ + +VEAA+ N AN ++N + Sbjct: 315 IFDLYCGTGTIAQVLAPVAKKVIGIELIEEAVEAAKINAEANGLHNCAFIA------GDV 368 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCR 330 M + E DI I +DPPR G+ + + + +Y+SC SL R Sbjct: 369 MEKVAELPDNPDI---------IILDPPRDGIHPKAIFKIIGFKPDTFIYVSCKATSLAR 419 Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364 DL + +E++ D FP+ H+E V L R Sbjct: 420 DLPFFKEAGYGVEKVCCVDMFPHVGHVETVVKLSR 454 >gi|257784455|ref|YP_003179672.1| RNA methyltransferase, TrmA family [Atopobium parvulum DSM 20469] gi|257472962|gb|ACV51081.1| RNA methyltransferase, TrmA family [Atopobium parvulum DSM 20469] Length = 441 Score = 72.8 bits (177), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 61/185 (32%), Positives = 87/185 (47%), Gaps = 24/185 (12%) Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 SF Q N ++E VL+ +Q D ++LYCG G F+L LA+ V AVE P+ Sbjct: 274 SFFQVNTKGAEKLVELVLSGLD-VQPDDEAMDLYCGAGTFTLPLAKRAGFVSAVEAYGPA 332 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 V R N+ ++NV V + REF D D+ I VDPPR+G Sbjct: 333 VRDLRRNLELAKLDNVDAVGGDAG---------REFPD-TDADV-------IIVDPPRAG 375 Query: 304 LDDATVGMVQAYP--HILYISCNPDSLCRDLSILSTTHTIERLAL--FDQFPYTRHMECG 359 L + + P I Y+SC+P +L RDL + + +++ D FP T H+E Sbjct: 376 LAPDVIQQLSKQPARAIAYVSCDPATLARDLKRFVEIGSYKPVSVTPVDLFPQTFHVENV 435 Query: 360 VLLVR 364 LL R Sbjct: 436 CLLKR 440 >gi|288574832|ref|ZP_06393189.1| RNA methyltransferase, TrmA family [Dethiosulfovibrio peptidovorans DSM 11002] gi|288570573|gb|EFC92130.1| RNA methyltransferase, TrmA family [Dethiosulfovibrio peptidovorans DSM 11002] Length = 454 Score = 72.8 bits (177), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 46/150 (30%), Positives = 75/150 (50%), Gaps = 17/150 (11%) Query: 211 GDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270 G ++ELY G G +++LA+ VLAVE P++E N++ N ++NVK + +++ Sbjct: 308 GAVVELYAGVGALTVILAKAAKTVLAVEEWAPAIERLLENVSRNGLDNVKGICNRAEDTV 367 Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSL 328 + M + I VDPPR G + V + ++Y+SCNP +L Sbjct: 368 RTMVEAKP--------------DVIVVDPPRGGCASEVLDAVTESSADMLVYVSCNPSTL 413 Query: 329 CRDLS-ILSTTHTIERLALFDQFPYTRHME 357 RD + ++S + L FD FP T H+E Sbjct: 414 ARDGAKLVSDGWELATLECFDLFPQTVHVE 443 >gi|225011827|ref|ZP_03702265.1| RNA methyltransferase, TrmA family [Flavobacteria bacterium MS024-2A] gi|225004330|gb|EEG42302.1| RNA methyltransferase, TrmA family [Flavobacteria bacterium MS024-2A] Length = 471 Score = 72.8 bits (177), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 58/205 (28%), Positives = 94/205 (45%), Gaps = 20/205 (9%) Query: 164 RDYVDERLTVAGRTLIYRQIENSF--TQPNAGINVHMLEWVLAATKGIQGDLLELYCGNG 221 +D++ E L L ++ SF T P ++ + AA KG + + +LY G G Sbjct: 279 QDFITEHLG----DLQFKITAKSFYQTNPKQAEVLYSIGKDFAALKGNE-IVYDLYTGTG 333 Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281 +L LA+ +++ VE ++EAA N N + N K+ FN Sbjct: 334 TIALSLAKQCAKIIGVESVPEAIEAANENATFNKIKNATFEVGDMKDC---------FN- 383 Query: 282 LKDIDIHSYRFKTIFVDPPRSGL-DDATVGMVQAYPH-ILYISCNPDSLCRDLSILSTTH 339 D + + + DPPR+G+ D +++ P I+YISCN + RDL ++ + Sbjct: 384 -DDFIKRHGKAEVVITDPPRNGMHPDVVKQLLKLAPQRIVYISCNSSTQARDLELMKGMY 442 Query: 340 TIERLALFDQFPYTRHMECGVLLVR 364 T+ + D FP T H+E VLL R Sbjct: 443 TVVKSQAVDMFPQTHHVENVVLLHR 467 >gi|328353172|emb|CCA39570.1| hypothetical protein PP7435_Chr3-0612 [Pichia pastoris CBS 7435] Length = 546 Score = 72.8 bits (177), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 94/383 (24%), Positives = 160/383 (41%), Gaps = 55/383 (14%) Query: 9 QYEQQLAEKVDRLRQ--------MMLAFQVPNLQIFRSEPIHYRMRAE----FHIWH-DG 55 +Y QQL K D + + + ++P++ P+ Y R + F I Sbjct: 177 EYAQQLLLKRDTIVNAYKFFAPILTASGKLPDMGSTVPSPLQYSYRTKLTPHFEIPRRKT 236 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKL------FQIDY 109 D F +K R + F P + +N+ ++++ + ++ L F+ Y Sbjct: 237 QDFQKPSFGFGSKGRPK---FRPEIVDVNSSIVDIEECLIGTSIINTGLSNERKKFESTY 293 Query: 110 LTSQSDQAIVTLIYHRLLDDAWRECAIRLRDAL-HARKYQIQLIGRANKTKICL--DRDY 166 + I+ + D E RD K +++L + + K C+ R Sbjct: 294 NNYKRGATILLRENTTPVADPPVETGEGSRDGTGEISKAEVELPDGSKQLKTCVTEPRQI 353 Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWV---LAATKGIQGDLLELYCGNGNF 223 V E + G + E F Q N I ++++V L + L++ YCG+G F Sbjct: 354 VTE--IINGNKFQFSAGE--FFQNNNSILPDIIKYVQDNLKLDPNGENYLVDAYCGSGLF 409 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 S+ A +V+ VEI+ SV+ A +N N++ N + + + E+ F Sbjct: 410 SISCASSVKKVIGVEISADSVKFATHNAELNNIENCEFI---------TGKAEKIF---- 456 Query: 284 DIDIHSYRFKT-IFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLS--ILSTT 338 DI R +T I +DPPR G DD + + + I+YISCN S RDL I +T+ Sbjct: 457 -ADIQLPRDQTSIILDPPRKGCDDVFLTQLSEFKPKKIIYISCNVHSQARDLEYFINNTS 515 Query: 339 HT----IERLALFDQFPYTRHME 357 + I+ + FD FP T H+E Sbjct: 516 NGFQYRIDSIRGFDFFPQTHHVE 538 >gi|323467070|gb|ADX70757.1| 23S rRNA (Uracil-5-)-methyltransferase RumA [Lactobacillus helveticus H10] Length = 458 Score = 72.8 bits (177), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 47/155 (30%), Positives = 75/155 (48%), Gaps = 15/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ Y G G L +A+H V +E+ + +++ A+ N N + N K ++E Sbjct: 307 VIDAYSGIGTIGLSVAKHVKAVRGIEVVRDAIKDAKDNAKLNDITNAKYYLGKAEEI--- 363 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCR 330 M R + D+ +FVDPPR GL + V+ P I+YISCNP +L R Sbjct: 364 MPRWAKSGLKTDV---------VFVDPPRKGLTPEFINAAVKTGPKKIVYISCNPATLVR 414 Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364 DL + ++ R+ D FP T H+E +L R Sbjct: 415 DLQLFQEKSYEFNRIDPVDMFPQTPHVESVTVLKR 449 >gi|225858819|ref|YP_002740329.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae 70585] gi|225721367|gb|ACO17221.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae 70585] Length = 453 Score = 72.8 bits (177), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 48/156 (30%), Positives = 79/156 (50%), Gaps = 15/156 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ Y G G L +A+H V VE+ +VE ++ N N+++N V +++ A Sbjct: 308 VIDAYSGIGTIGLSVAKHVKEVYGVELIPEAVENSKKNAQLNNISNAHYVCDTAE---NA 364 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV--GMVQAYPHILYISCNPDSLCR 330 M+ N LKD + I VDPPR GL ++ + I YISCN ++ R Sbjct: 365 MK-----NWLKD----GIQPTVILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMAR 415 Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVRK 365 D+ + + ++++ D FP T H+EC VLL R+ Sbjct: 416 DIKLYQELGYELKKVQPVDLFPQTHHVECVVLLQRR 451 >gi|326693112|ref|ZP_08230117.1| RNA methyltransferase [Leuconostoc argentinum KCTC 3773] Length = 506 Score = 72.8 bits (177), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 95/384 (24%), Positives = 156/384 (40%), Gaps = 47/384 (12%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHDGDDLYHIM 62 Y QLA K D + Q + FQ I + P YR +A+F + GD L M Sbjct: 141 YPAQLAFKKDVIAQALEKFQPRGWTDYDLRDTIGMANPYEYRNKAQFPVRKIGDKLSVGM 200 Query: 63 FDQQTKERMRIDYFM---PGSL--------LINALMIEMMATIRLEPLLRAKLFQIDYLT 111 + + + + + + P ++ L++ L + + + ++ + + + T Sbjct: 201 YKRSSHDLVDLPVVHTQDPATMKVLRTVRDLLDKLSVSIYNEDKNRGTVKTIVARASHTT 260 Query: 112 SQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARK--YQIQLIGRAN-----KTKICLDR 164 + +VT D A E + AL +Q GR + +T + Sbjct: 261 GEVQLTVVTNTDGFPGDAALIEA---INQALPEVTGIFQNFNPGRTSIVWGEETIKLWGK 317 Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNF 223 DY++E T+ G+T ++ +F Q N + LAA D L++ Y G G Sbjct: 318 DYIEE--TIMGKT--FQLSPRAFMQLNYTQMTVVYNEALAALDLTHADKLVDSYAGVGTI 373 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 L LA V +EI +V+ A N NH+ N K +++E + E Sbjct: 374 GLSLADKVGEVRGMEIIPEAVDDANINAEINHITNAKYEIGTAEELFPKWQAE------- 426 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDA-TVGMVQAYPH-ILYISCNPDSLCRDLSILSTTHTI 341 + + VDPPR+GLD A +++ P +YISCN SL RDL L+ + + Sbjct: 427 -----GWIADALVVDPPRTGLDTALRREILRTKPEKFVYISCNASSLARDLVDLTQAYQV 481 Query: 342 ERLALFDQFPYTRHMECGVLLVRK 365 E + D FP T E V L + Sbjct: 482 EYIQSIDMFPQTARWEGVVKLTHR 505 >gi|307704726|ref|ZP_07641623.1| 23S rRNA uracil-5-methyltransferase [Streptococcus mitis SK597] gi|307621705|gb|EFO00745.1| 23S rRNA uracil-5-methyltransferase [Streptococcus mitis SK597] Length = 452 Score = 72.8 bits (177), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 52/184 (28%), Positives = 89/184 (48%), Gaps = 16/184 (8%) Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 +F Q N G+ + + + + D+ ++ Y G G L +A+H V VE+ +V Sbjct: 280 AFYQVNTGMAEKLYQTAIDFAALKEDDVVIDAYSGIGTIGLSVAKHVKEVYGVEVIPEAV 339 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 E ++ N NH++N V +++ AM+ N LKD + I VDPPR GL Sbjct: 340 ENSKKNAQLNHISNAHYVCDTAE---NAMK-----NWLKD----GIQPSLILVDPPRKGL 387 Query: 305 DDATVGMVQ--AYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVL 361 ++ + I YISCN ++ RD+ + + ++++ D FP T H+EC L Sbjct: 388 TESFIKASSQTGADRIAYISCNVATMARDIKLYRELGYELKKVQPVDLFPQTHHVECVSL 447 Query: 362 LVRK 365 L ++ Sbjct: 448 LEKR 451 >gi|289449975|ref|YP_003474465.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289184522|gb|ADC90947.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 458 Score = 72.8 bits (177), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 57/200 (28%), Positives = 85/200 (42%), Gaps = 20/200 (10%) Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVL 227 R T+ G T + SF Q N + L + G+ G+ +++ YCG G SL L Sbjct: 272 RETIGGLTFMVSW--QSFLQVNT-LQAEKLYQTVLEVAGLSGNETVIDAYCGIGTISLYL 328 Query: 228 ARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDI 287 AR V VEI ++E A N N ++N V ++ E Sbjct: 329 ARRAKFVYGVEIVPAAIEMAERNAEVNGIHNASFVCGKAETVIPQWVAE----------- 377 Query: 288 HSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLS-ILSTTHTIERL 344 + VDPPR GL + + I+Y+SCNP +L RD++ +L + + Sbjct: 378 -GLAPDVVVVDPPRKGLATEVIEALSTVRPAKIVYVSCNPATLARDMALLLKAGYHAGDV 436 Query: 345 ALFDQFPYTRHMECGVLLVR 364 D FP T H+E VL+ R Sbjct: 437 QPVDMFPQTPHVESVVLMSR 456 >gi|221194774|ref|ZP_03567831.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Atopobium rimae ATCC 49626] gi|221185678|gb|EEE18068.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Atopobium rimae ATCC 49626] Length = 468 Score = 72.8 bits (177), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 70/207 (33%), Positives = 95/207 (45%), Gaps = 28/207 (13%) Query: 169 ERLTVAGR--TLI----YRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNG 221 ERL+ AG LI R SF Q N ++E VL+A D ++LYCG G Sbjct: 276 ERLSGAGSWSELIGDERMRVSAPSFFQVNTKGAEKLVELVLSALDVRDSDEAMDLYCGAG 335 Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281 F+L LAR V AVE P+V R N+ +NV + + R F Sbjct: 336 TFTLPLARRVGFVSAVESYGPAVRDLRRNLEDAGWSNVDAIGGDAG---------RSFPD 386 Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILSTTH 339 D D+ I VDPPR+GL V + Q+ I Y+SC+P +L RDL Sbjct: 387 -TDADV-------IVVDPPRAGLAPDVVKQLSEQSARAIAYVSCDPATLARDLRRFVDAG 438 Query: 340 TIERLAL--FDQFPYTRHMECGVLLVR 364 T + +++ D FP T H+E VL+ R Sbjct: 439 TFKPVSVTPVDLFPQTFHVENVVLMSR 465 >gi|153854119|ref|ZP_01995427.1| hypothetical protein DORLON_01418 [Dorea longicatena DSM 13814] gi|149753168|gb|EDM63099.1| hypothetical protein DORLON_01418 [Dorea longicatena DSM 13814] Length = 470 Score = 72.8 bits (177), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 62/251 (24%), Positives = 113/251 (45%), Gaps = 37/251 (14%) Query: 129 DAWRECAIRLR------DALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182 DAW E + LH + + + + T++ +DY E L L ++ Sbjct: 240 DAWLEKMTAMNFDGTLVGILHTKNDSLADVVKDEGTEVLFGQDYFYEELL----GLKFKI 295 Query: 183 IENSFTQPNAGINVHML-----EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAV 237 SF Q N+ + +L E++ + + + +LY G G + +LA +V+ V Sbjct: 296 TPFSFFQTNS-LGAEVLYETAREYIGDTNEKV---VFDLYSGTGTIAQILAPVAKKVVGV 351 Query: 238 EIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFV 297 EI + +VEAA+ N N+++N ++ E + D+ I + Sbjct: 352 EIVEEAVEAAKENAKLNNLDNCTFWA------GDVLKVIDELGEVPDL---------IML 396 Query: 298 DPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTR 354 DPPR G++ + + + ++YI+C P SL RDL ++ + +E+++ D FP T Sbjct: 397 DPPRDGVNPKALMKILNFGVERLVYIACKPTSLARDLEMIQGRGYKVEKISGVDLFPGTY 456 Query: 355 HMECGVLLVRK 365 H+E LL +K Sbjct: 457 HVETVCLLSKK 467 >gi|325269116|ref|ZP_08135736.1| TrmA family RNA methyltransferase [Prevotella multiformis DSM 16608] gi|324988503|gb|EGC20466.1| TrmA family RNA methyltransferase [Prevotella multiformis DSM 16608] Length = 474 Score = 72.8 bits (177), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 55/207 (26%), Positives = 92/207 (44%), Gaps = 24/207 (11%) Query: 171 LTVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGDLL--ELYCGN 220 +T G I+ +E+ SF Q N H+ V + GD L +LY G Sbjct: 280 ITFKGNDYIFETMEDLKFKVGPKSFYQTNTEQAYHLYS-VAREFASLTGDELVYDLYTGT 338 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G + +A +V+ +E ++E A+ N N+++N K+ Sbjct: 339 GTIANFVAGKARKVIGIEYVPEAIEDAKVNSEINNISNTLFYAGDMKDIL---------- 388 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYPH-ILYISCNPDSLCRDLSILSTT 338 +D R I DPPR+G+ + ++ A P I+Y+SCNP + RDL++L Sbjct: 389 -TEDFISRQGRPDVIITDPPRAGMHPDVINVILGASPERIVYVSCNPATQARDLALLDAD 447 Query: 339 HTIERLALFDQFPYTRHMECGVLLVRK 365 + + + D FP+T H+E VLL ++ Sbjct: 448 YQVAAVQPVDMFPHTPHVENVVLLEKR 474 >gi|157963447|ref|YP_001503481.1| 23S rRNA methyluridine methyltransferase [Shewanella pealeana ATCC 700345] gi|157848447|gb|ABV88946.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Shewanella pealeana ATCC 700345] Length = 358 Score = 72.8 bits (177), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 52/170 (30%), Positives = 80/170 (47%), Gaps = 20/170 (11%) Query: 200 EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259 EWV A K L +L+CG G F L A + +EI+ ++ A+ + + V Sbjct: 207 EWV-AELK--PSSLWDLFCGVGGFGLHCASKTIPLTGIEISSEAIACAKISAETMGLTQV 263 Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPH 317 + S F Q + + + V+PPR G+ ++ + A Sbjct: 264 DFTALDSTGFAQGCDA-------------TDKPDVVIVNPPRRGIGESLCQSLSDFAPKA 310 Query: 318 ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRKPS 367 ILY SCNP +L +DL+ + H I+++ LFD FP+T H E V+LV KPS Sbjct: 311 ILYSSCNPHTLAKDLANIQGYH-IQKVQLFDMFPHTDHFEVLVMLV-KPS 358 >gi|323693228|ref|ZP_08107446.1| RNA methyltransferase [Clostridium symbiosum WAL-14673] gi|323502711|gb|EGB18555.1| RNA methyltransferase [Clostridium symbiosum WAL-14673] Length = 576 Score = 72.8 bits (177), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 97/386 (25%), Positives = 153/386 (39%), Gaps = 56/386 (14%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHD--GDDLYHIMFDQQT 67 Y+QQLAEK R+ +++ I EP+HYR + HD G+ L + Sbjct: 215 YKQQLAEKQKRMEELLKGICPVKPIIGMKEPLHYRNKVHAVFGHDRKGNPLSGVY----- 269 Query: 68 KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRA-KLFQIDYLTS-------------Q 113 KE I + L+ + E++ TIR +L++ K+ D T Sbjct: 270 KEGTHILVPVEKCLIEDEKADEIIGTIR--GMLKSFKIRTFDEDTGYGFLRHVLVRRGFA 327 Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGR-------ANKTKICLDRDY 166 + + +V L+ + + LR+ IQ I +K + R Y Sbjct: 328 TGEIMVVLVTASPVFPSKNNFVKALREKHPEITTIIQNINNRSTSMVLGDKEHVLYGRGY 387 Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFS 224 +++ L L +R SF Q N+ +L G+ G L+ YCG G Sbjct: 388 IEDVLC----GLRFRISSKSFYQVNS-AQTELLYNKALQLAGLTGKEKALDAYCGIGTIG 442 Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284 L+ +R V+ VE+ +V A N N V N++ + F M + E Sbjct: 443 LIASRKAGEVIGVELNPDAVRDAVQNAKMNDVKNIQFYCNDAGRFIVNMAEKGE-----K 497 Query: 285 IDIHSYRFKTIFVDPPRSGLD----DATVGMVQAYPHILYISCNPDSLCRDLS-ILSTTH 339 +D+ I +DPPRSG DA M ++Y+SC P++L RDL + + Sbjct: 498 VDV-------ILMDPPRSGSTKEFIDAVAKM--GPERVVYVSCGPETLVRDLRWFMGNGY 548 Query: 340 TIERLALFDQFPYTRHMECGVLLVRK 365 D F T H+E VL+ RK Sbjct: 549 RAVEAWPVDMFGGTGHVETVVLIQRK 574 >gi|302379451|ref|ZP_07267938.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Finegoldia magna ACS-171-V-Col3] gi|302312796|gb|EFK94790.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Finegoldia magna ACS-171-V-Col3] Length = 496 Score = 72.8 bits (177), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 44/155 (28%), Positives = 74/155 (47%), Gaps = 18/155 (11%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +L+LYCG G ++ + + + + VE+ K +V+ A N N++ +++ + S+ Sbjct: 264 ILDLYCGIGTTTMYIG-NGNNTIGVEVVKDAVKDANQNKKLNNLESIQFIEEKSENVVGK 322 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCR 330 + +E F I VDPPR GLD V + ++YISC+P +L R Sbjct: 323 LTQEH--------------FDVILVDPPRKGLDPKVVDAIIKSTARKLVYISCDPATLAR 368 Query: 331 DLSILSTTH-TIERLALFDQFPYTRHMECGVLLVR 364 DL L+ + + L D F T H+E LL + Sbjct: 369 DLKALTENGFAVRDVKLVDMFAKTMHVETVALLSK 403 >gi|238786284|ref|ZP_04630226.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Yersinia bercovieri ATCC 43970] gi|238712807|gb|EEQ04877.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Yersinia bercovieri ATCC 43970] Length = 425 Score = 72.8 bits (177), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 52/184 (28%), Positives = 84/184 (45%), Gaps = 21/184 (11%) Query: 187 FTQPNAGINVHMLEWVLAATK-GIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 F Q N +N M+ +A Q +L+L+CG GNF+L LA+ V+ VE V Sbjct: 251 FIQVNDVVNQKMVAQAIAWLDVQPQERVLDLFCGMGNFTLPLAKRAREVVGVEGVAALVA 310 Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDPPRS 302 +YN N + NV N DI + F + +DP R+ Sbjct: 311 NGQYNARNNTLPNVSFFHE---------------NLESDISCQPWAVQGFDKVLLDPARA 355 Query: 303 GLDDATVGMVQAYPH-ILYISCNPDSLCRDLSI-LSTTHTIERLALFDQFPYTRHMECGV 360 G +V+ P ++Y+SCNP +L RD + L+ + + ++ + D FP+T H+E Sbjct: 356 GAAGVMSHIVKLAPKRVVYVSCNPTTLARDSQVLLAAGYRLAQVRMLDMFPHTGHLESMA 415 Query: 361 LLVR 364 L ++ Sbjct: 416 LFMQ 419 >gi|257087679|ref|ZP_05582040.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis D6] gi|256995709|gb|EEU83011.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis D6] gi|315025522|gb|EFT37454.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX2137] Length = 456 Score = 72.8 bits (177), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 83/385 (21%), Positives = 156/385 (40%), Gaps = 49/385 (12%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHDGDDLYHIM 62 Y+ QL K D L+Q + F+ N Q I P +YR +A+F + + + Sbjct: 92 YKAQLDFKKDLLKQALNKFKPANYQNYELRKTIGMENPWNYRNKAQFQLRQIDGQVEAGL 151 Query: 63 FDQQTKERMRIDYFM---PGSLLINALMIEMMATIRL--------EPLLRAKLFQIDYLT 111 + + + + ID + P + + +++++ +L + R + ++ T Sbjct: 152 YQADSHQLVPIDNCLVQQPATTKVMNTLVDLLNDFQLPIYDERKNSGIFRTLMVRVGIQT 211 Query: 112 SQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERL 171 + +T + L +E +R + I + KT + + D+ L Sbjct: 212 GEVQVVFIT----QSLKFPQKEKMVRAINEQLPEVVSIMQNVQNKKTSLVMG----DDTL 263 Query: 172 TVAGRTLIYRQIENSF--TQPNAGINVHMLEWVLAATKGIQG-------DLLELYCGNGN 222 + G+ I I + P A ++ + + +GI+ +++ YCG G Sbjct: 264 HLWGKESIEEHINDVVFDLSPRAFFQLNPEQTEVLYNEGIKALDLQPNETVVDAYCGVGT 323 Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282 L LA+ +V ++ +++ AR+N V N ++++ +E Sbjct: 324 IGLSLAKQAHQVRGMDTIPAAIDDARFNAKRLGVTNTHYAVGTAEDLLPKWFKE------ 377 Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDA--TVGMVQAYPHILYISCNPDSLCRDLSILSTTHT 340 ++ I VDPPR+GLD T + Q ++YISCN +L RDL L+ + Sbjct: 378 ------GFKPDAIVVDPPRTGLDRKLLTALLKQPPKKMVYISCNVSTLARDLVQLAKVYQ 431 Query: 341 IERLALFDQFPYTRHMECGVLLVRK 365 ++ L D FP T E V L RK Sbjct: 432 VDYLQSVDMFPQTARCEVVVKLTRK 456 >gi|256850547|ref|ZP_05555973.1| RNA methyltransferase [Lactobacillus crispatus MV-1A-US] gi|256712570|gb|EEU27565.1| RNA methyltransferase [Lactobacillus crispatus MV-1A-US] Length = 451 Score = 72.8 bits (177), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 59/217 (27%), Positives = 102/217 (47%), Gaps = 20/217 (9%) Query: 157 KTKICLDR-DYV---DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQG 211 KT + L + DY+ ++++T L +R SF Q N+ + + + A G Sbjct: 246 KTNVILGKKDYLVFGNDQITDQIGDLKFRISPQSFFQINSLQTPRLYDLAIKQADLGSDD 305 Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271 +++ Y G G L +A+H V +E+ + +++ A+ N N + N K ++E Sbjct: 306 VVIDAYSGIGTIGLSVAKHVKAVRGIEVVRDAIKDAKDNAELNGIENAKYYLGKAEEI-- 363 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLC 329 M R + D+ +FVDPPR GL + V+ P ++YISCNP ++ Sbjct: 364 -MPRWAKKGMKTDV---------VFVDPPRKGLTPEFINATVKTGPKKVVYISCNPATMI 413 Query: 330 RDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRK 365 RDL + + +R+ D FP T H+E +L +K Sbjct: 414 RDLLLFQEQGYEFKRIDPVDMFPQTPHVEAVTVLTKK 450 >gi|57652118|ref|YP_186782.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus COL] gi|87160330|ref|YP_494530.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88195795|ref|YP_500605.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus NCTC 8325] gi|151222047|ref|YP_001332869.1| RNA methyltransferase TrmA family protein [Staphylococcus aureus subsp. aureus str. Newman] gi|161510119|ref|YP_001575778.1| TrmA family RNA methyltransferase [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221141187|ref|ZP_03565680.1| TrmA family RNA methyltransferase [Staphylococcus aureus subsp. aureus str. JKD6009] gi|258451037|ref|ZP_05699073.1| RNA methyltransferase TrmA family protein [Staphylococcus aureus A5948] gi|262049941|ref|ZP_06022801.1| hypothetical protein SAD30_1411 [Staphylococcus aureus D30] gi|262053191|ref|ZP_06025349.1| hypothetical protein SA930_1196 [Staphylococcus aureus 930918-3] gi|282923236|ref|ZP_06330917.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus A9765] gi|284024943|ref|ZP_06379341.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus 132] gi|294849446|ref|ZP_06790188.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus A9754] gi|304379083|ref|ZP_07361830.1| 23S rRNA (uracil-5-)-methyltransferase [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|81694159|sp|Q5HEM5|Y1957_STAAC RecName: Full=Uncharacterized RNA methyltransferase SACOL1957 gi|57286304|gb|AAW38398.1| RNA methyltransferase, TrmA family [Staphylococcus aureus subsp. aureus COL] gi|87126304|gb|ABD20818.1| RNA methyltransferase, TrmA family [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87203353|gb|ABD31163.1| RNA methyltransferase, TrmA family, putative [Staphylococcus aureus subsp. aureus NCTC 8325] gi|150374847|dbj|BAF68107.1| RNA methyltransferase TrmA family protein [Staphylococcus aureus subsp. aureus str. Newman] gi|160368928|gb|ABX29899.1| TrmA family RNA methyltransferase [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|257861279|gb|EEV84091.1| RNA methyltransferase TrmA family protein [Staphylococcus aureus A5948] gi|259158918|gb|EEW44004.1| hypothetical protein SA930_1196 [Staphylococcus aureus 930918-3] gi|259161949|gb|EEW46531.1| hypothetical protein SAD30_1411 [Staphylococcus aureus D30] gi|282593147|gb|EFB98146.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus A9765] gi|294823583|gb|EFG40010.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus A9754] gi|302751769|gb|ADL65946.1| putative RNA methyltransferase [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304342318|gb|EFM08210.1| 23S rRNA (uracil-5-)-methyltransferase [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|315196232|gb|EFU26587.1| TrmA family RNA methyltransferase [Staphylococcus aureus subsp. aureus CGS01] gi|320139723|gb|EFW31592.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus subsp. aureus MRSA131] gi|320142360|gb|EFW34174.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus subsp. aureus MRSA177] gi|329314573|gb|AEB88986.1| Uncharacterized RNA methyltransferase [Staphylococcus aureus subsp. aureus T0131] gi|329728677|gb|EGG65107.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus subsp. aureus 21189] Length = 453 Score = 72.8 bits (177), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 44/152 (28%), Positives = 69/152 (45%), Gaps = 14/152 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +L+ YCG G L +A V VE+ ++E A+ N N NN V ++E Sbjct: 311 VLDTYCGIGTIGLYMAPLAKHVYGVEVVPSAIEDAQQNATINQCNNTTFVCGKAEEVILQ 370 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330 + + + + VDPPR G D+ + ++ P I+YISCNP + R Sbjct: 371 WKAQ------------GIKPDVVMVDPPRKGCDETFIQTLLTLEPKRIVYISCNPATQQR 418 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLL 362 D +L+ + +E + D FP T H+E L Sbjct: 419 DALLLAEKYQLEEVTPVDMFPQTTHVETVALF 450 >gi|315922778|ref|ZP_07919018.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313696653|gb|EFS33488.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 472 Score = 72.8 bits (177), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 58/201 (28%), Positives = 93/201 (46%), Gaps = 26/201 (12%) Query: 175 GRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGDLL--ELYCGNGNFS 224 G+ I+ ++E SF Q N+ + L V G+ G+ L +LY G G + Sbjct: 282 GKDHIFEEMEGLRFKVGPKSFYQTNSE-QAYNLYKVAREFAGLTGNELVYDLYTGTGTIA 340 Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE-FTQAMRREREFNRLK 283 ++R +V+ +E ++E A+ N N + N K+ TQ Sbjct: 341 NFVSRQARQVIGIEYVPEAIEDAKINAEINDIKNALFYAGDMKDILTQDF---------- 390 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQ-AYPH-ILYISCNPDSLCRDLSILSTTHTI 341 I+ H R I DPPR+G+ V ++ A P I+Y+SCNP + RDL +L + + Sbjct: 391 -INQHG-RPDVIITDPPRAGMHQDVVDVILFAEPKRIVYVSCNPATQARDLQLLDEKYKV 448 Query: 342 ERLALFDQFPYTRHMECGVLL 362 + + D FP+T H+E VLL Sbjct: 449 KAIQPVDMFPHTHHVENVVLL 469 >gi|46445882|ref|YP_007247.1| putative RNA methyl transferase [Candidatus Protochlamydia amoebophila UWE25] gi|51316633|sp|Q6MEM7|Y248_PARUW RecName: Full=Uncharacterized RNA methyltransferase pc0248 gi|46399523|emb|CAF22972.1| putative RNA methyl transferase [Candidatus Protochlamydia amoebophila UWE25] Length = 434 Score = 72.8 bits (177), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 52/186 (27%), Positives = 93/186 (50%), Gaps = 16/186 (8%) Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRV 234 LI+R +F Q + ++++ + + + T ++ +L+LYCG G SL+LA V Sbjct: 253 ENLIFRFTPQAFIQNHPEQSLYIYKKICSLTIQLKSKKILDLYCGFGITSLLLASQGHFV 312 Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294 +E ++ A+ N NH+ +V+ + ++ + + K +D+ Sbjct: 313 TGIEYNSDAIRFAKENSKLNHLPHVEFLEGDVEKILPICLKSQ-----KCVDL------- 360 Query: 295 IFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCRDLSILST-THTIERLALFDQFP 351 + V+PPR GL + + ++ A P ++YISC P +L RDLSIL + I +D FP Sbjct: 361 VIVNPPRIGLSKSVIKILMSALPEDMIYISCMPSTLARDLSILCEDLYEIHECTAYDMFP 420 Query: 352 YTRHME 357 T H+E Sbjct: 421 QTSHVE 426 >gi|237719530|ref|ZP_04550011.1| RNA methyltransferase [Bacteroides sp. 2_2_4] gi|229451390|gb|EEO57181.1| RNA methyltransferase [Bacteroides sp. 2_2_4] Length = 472 Score = 72.8 bits (177), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 58/201 (28%), Positives = 93/201 (46%), Gaps = 26/201 (12%) Query: 175 GRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGDLL--ELYCGNGNFS 224 G+ I+ ++E SF Q N+ + L V G+ G+ L +LY G G + Sbjct: 282 GKDHIFEEMEGLRFKVGPKSFYQTNSE-QAYNLYKVAREFTGLTGNELVYDLYTGTGTIA 340 Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE-FTQAMRREREFNRLK 283 ++R +V+ +E ++E A+ N N + N K+ TQ Sbjct: 341 NFVSRQARQVIGIEYVPEAIEDAKVNAEINDIKNALFYAGDMKDILTQDF---------- 390 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQ-AYPH-ILYISCNPDSLCRDLSILSTTHTI 341 I+ H R I DPPR+G+ V ++ A P I+Y+SCNP + RDL +L + + Sbjct: 391 -INQHG-RPDVIITDPPRAGMHQDVVDVILFAEPKRIVYVSCNPATQARDLQLLDEKYKV 448 Query: 342 ERLALFDQFPYTRHMECGVLL 362 + + D FP+T H+E VLL Sbjct: 449 KAIQPVDMFPHTHHVENVVLL 469 >gi|299146119|ref|ZP_07039187.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides sp. 3_1_23] gi|298516610|gb|EFI40491.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides sp. 3_1_23] Length = 472 Score = 72.8 bits (177), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 58/201 (28%), Positives = 93/201 (46%), Gaps = 26/201 (12%) Query: 175 GRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGDLL--ELYCGNGNFS 224 G+ I+ ++E SF Q N+ + L V G+ G+ L +LY G G + Sbjct: 282 GKDHIFEEMEGLRFKVGPKSFYQTNSE-QAYNLYKVAREFAGLTGNELVYDLYTGTGTIA 340 Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE-FTQAMRREREFNRLK 283 ++R +V+ +E ++E A+ N N + N K+ TQ Sbjct: 341 NFVSRQARQVIGIEYVPEAIEDAKVNAEINDIKNALFYAGDMKDILTQDF---------- 390 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQ-AYPH-ILYISCNPDSLCRDLSILSTTHTI 341 I+ H R I DPPR+G+ V ++ A P I+Y+SCNP + RDL +L + + Sbjct: 391 -INQHG-RPDVIITDPPRAGMHQDVVDVILFAEPKRIVYVSCNPATQARDLQLLDEKYKV 448 Query: 342 ERLALFDQFPYTRHMECGVLL 362 + + D FP+T H+E VLL Sbjct: 449 KAIQPVDMFPHTHHVENVVLL 469 >gi|220905833|ref|YP_002481144.1| TrmA family RNA methyltransferase [Cyanothece sp. PCC 7425] gi|219862444|gb|ACL42783.1| RNA methyltransferase, TrmA family [Cyanothece sp. PCC 7425] Length = 457 Score = 72.8 bits (177), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 46/149 (30%), Positives = 75/149 (50%), Gaps = 19/149 (12%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G SL +AR +V+ +EI +V A+ N N + NV ++ Sbjct: 315 IVDAYCGIGTLSLPIARQAQQVIGLEIHPATVAQAKQNAIRNGLTNVSFYAGPVEQ---- 370 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330 + + + L DI + +DPPR G D + V + P I+Y+SCNP +L R Sbjct: 371 --QLPQLDLLPDI---------VVLDPPRKGCDRSVVEHLSQLRPPRIVYMSCNPATLAR 419 Query: 331 DLSIL--STTHTIERLALFDQFPYTRHME 357 DL +L + + +E++ D FP T H+E Sbjct: 420 DLHLLCQANPYELEQIQPADFFPQTAHVE 448 >gi|317127543|ref|YP_004093825.1| RNA methyltransferase, TrmA family [Bacillus cellulosilyticus DSM 2522] gi|315472491|gb|ADU29094.1| RNA methyltransferase, TrmA family [Bacillus cellulosilyticus DSM 2522] Length = 469 Score = 72.8 bits (177), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 83/381 (21%), Positives = 155/381 (40%), Gaps = 54/381 (14%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHDGDDLYHIM 62 YE QL K D +RQ + NL I EP YR +++ + H + + Sbjct: 103 YEGQLKGKKDIVRQAFERYTKINLDKVDFHDTIGMEEPWKYRNKSQMQVGHHQGKVIAGL 162 Query: 63 FDQQTKERMRIDYFM---PGSLLINALMIEMMATIRLEP--------LLRAKLFQIDYLT 111 + + + + ++ + P + + ++ ++ A + + P +LR + ++ + T Sbjct: 163 YSPNSHKLIDLEDCIVQHPQTNKVTNVVKQLAADMNIAPYNERKRTGVLRTIVTRVGFET 222 Query: 112 SQSDQAIVTLIYHRLLDDAWREC-AIRLRDALHARKYQIQLIGRANKTKICLDRDYVDER 170 + +VT D + E RL D ++ N K L + DE Sbjct: 223 GEYQVVLVTAKKDIPKVDLFIEAIKQRLPDV-------TSIVQNINPKKTSLV--FGDET 273 Query: 171 LTVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGN 220 + + G+ I + +F Q N I L + G +++ YCG Sbjct: 274 IVLYGKEKIEETMSEFRFNLSPRAFFQLNP-IQTKKLYDAAKEAAQLTGKEKVVDAYCGV 332 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G L LA + +++ K S+E A+ N A+ + N V ++ +E Sbjct: 333 GTIGLWLAAGAKEIRGMDVIKESIEDAKNNAKAHGIKNAHYVSGKAEHLLPEWEKE---- 388 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCRDLSILST- 337 + + VDPPR+GLD+ + +++ P I+Y+SCNP +L +++ LS Sbjct: 389 --------GWHPDVVVVDPPRTGLDETFIQTLLRVKPKRIVYVSCNPSTLAKNVDALSKG 440 Query: 338 THTIERLALFDQFPYTRHMEC 358 + ++ L D FP T +EC Sbjct: 441 GYKLKALQPVDMFPQTAQVEC 461 >gi|218961437|ref|YP_001741212.1| SAM-dependent methyltransferase related to tRNA (uracil-5-)-methyltransferase [Candidatus Cloacamonas acidaminovorans] gi|167730094|emb|CAO81006.1| SAM-dependent methyltransferase related to tRNA (uracil-5-)-methyltransferase [Candidatus Cloacamonas acidaminovorans] Length = 456 Score = 72.8 bits (177), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 56/182 (30%), Positives = 85/182 (46%), Gaps = 20/182 (10%) Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 SF Q N G + M+ L +L+ YCG G L LA RV+ +E ++E Sbjct: 280 SFWQINTG-TMEMIISFLQDFVNSNNVILDAYCGIGAIGLSLADKVKRVILLEEFPQAIE 338 Query: 246 AARYNIAANHVNNVK-IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 A+ N N + NV ++ + + +E+ TI +DPPRSG+ Sbjct: 339 DAKENAVLNGLKNVSFVIGKVEDNLSAVLIKEKP--------------DTIIMDPPRSGV 384 Query: 305 -DDATVGMVQA-YPHILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTRHMECGV 360 +A ++QA I+Y+SC P +L RDL+ L + + L FD FP T H+EC Sbjct: 385 QQNALEAIIQAEVKQIIYLSCAPMTLARDLNTLIAGEKYKVVFLQPFDMFPNTWHIECLA 444 Query: 361 LL 362 +L Sbjct: 445 VL 446 >gi|161507077|ref|YP_001577031.1| RNA methyltransferase [Lactobacillus helveticus DPC 4571] gi|260102784|ref|ZP_05753021.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus helveticus DSM 20075] gi|160348066|gb|ABX26740.1| RNA methyltransferase [Lactobacillus helveticus DPC 4571] gi|260083388|gb|EEW67508.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus helveticus DSM 20075] Length = 450 Score = 72.8 bits (177), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 47/155 (30%), Positives = 75/155 (48%), Gaps = 15/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ Y G G L +A+H V +E+ + +++ A+ N N + N K ++E Sbjct: 305 VIDAYSGIGTIGLSVAKHVKAVRGIEVVRDAIKDAKDNAKLNDITNAKYYLGKAEEI--- 361 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCR 330 M R + D+ +FVDPPR GL + V+ P I+YISCNP +L R Sbjct: 362 MPRWAKSGLKTDV---------VFVDPPRKGLTPEFINAAVKTGPKKIVYISCNPATLVR 412 Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364 DL + ++ R+ D FP T H+E +L R Sbjct: 413 DLQLFQEKSYEFNRIDPVDMFPQTPHVESVTVLER 447 >gi|262047051|ref|ZP_06020010.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus crispatus MV-3A-US] gi|293381908|ref|ZP_06627876.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus crispatus 214-1] gi|312984350|ref|ZP_07791691.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus crispatus CTV-05] gi|260572628|gb|EEX29189.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus crispatus MV-3A-US] gi|290921555|gb|EFD98589.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus crispatus 214-1] gi|310894244|gb|EFQ43325.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus crispatus CTV-05] Length = 449 Score = 72.8 bits (177), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 59/217 (27%), Positives = 102/217 (47%), Gaps = 20/217 (9%) Query: 157 KTKICLDR-DYV---DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQG 211 KT + L + DY+ ++++T L +R SF Q N+ + + + A G Sbjct: 244 KTNVILGKKDYLVFGNDQITDQIGDLKFRISPQSFFQINSLQTPRLYDLAIKQADLGSDD 303 Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271 +++ Y G G L +A+H V +E+ + +++ A+ N N + N K ++E Sbjct: 304 VVIDAYSGIGTIGLSVAKHVKAVRGIEVVRDAIKDAKDNAELNGIENAKYYLGKAEEI-- 361 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLC 329 M R + D+ +FVDPPR GL + V+ P ++YISCNP ++ Sbjct: 362 -MPRWAKKGMKTDV---------VFVDPPRKGLTPEFINATVKTGPKKVVYISCNPATMI 411 Query: 330 RDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRK 365 RDL + + +R+ D FP T H+E +L +K Sbjct: 412 RDLLLFQEQGYEFKRIDPVDMFPQTPHVEAVTVLTKK 448 >gi|254571419|ref|XP_002492819.1| tRNA methyltransferase [Pichia pastoris GS115] gi|238032617|emb|CAY70640.1| tRNA methyltransferase [Pichia pastoris GS115] Length = 572 Score = 72.8 bits (177), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 95/383 (24%), Positives = 159/383 (41%), Gaps = 55/383 (14%) Query: 9 QYEQQLAEKVDRLRQMMLAF--------QVPNLQIFRSEPIHYRMRAE----FHIWH-DG 55 +Y QQL K D + F ++P++ P+ Y R + F I Sbjct: 203 EYAQQLLLKRDTIVNAYKFFAPILTASGKLPDMGSTVPSPLQYSYRTKLTPHFEIPRRKT 262 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKL------FQIDY 109 D F +K R + F P + +N+ ++++ + ++ L F+ Y Sbjct: 263 QDFQKPSFGFGSKGRPK---FRPEIVDVNSSIVDIEECLIGTSIINTGLSNERKKFESTY 319 Query: 110 LTSQSDQAIVTLIYHRLLDDAWRECAIRLRDAL-HARKYQIQLIGRANKTKICL--DRDY 166 + I+ + D E RD K +++L + + K C+ R Sbjct: 320 NNYKRGATILLRENTTPVADPPVETGEGSRDGTGEISKAEVELPDGSKQLKTCVTEPRQI 379 Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWV---LAATKGIQGDLLELYCGNGNF 223 V E + G + E F Q N I ++++V L + L++ YCG+G F Sbjct: 380 VTE--IINGNKFQFSAGE--FFQNNNSILPDIIKYVQDNLKLDPNGENYLVDAYCGSGLF 435 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 S+ A +V+ VEI+ SV+ A +N N++ N + + + E+ F Sbjct: 436 SISCASSVKKVIGVEISADSVKFATHNAELNNIENCEFI---------TGKAEKIF---- 482 Query: 284 DIDIHSYRFKT-IFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLS--ILSTT 338 DI R +T I +DPPR G DD + + + I+YISCN S RDL I +T+ Sbjct: 483 -ADIQLPRDQTSIILDPPRKGCDDVFLTQLSEFKPKKIIYISCNVHSQARDLEYFINNTS 541 Query: 339 HT----IERLALFDQFPYTRHME 357 + I+ + FD FP T H+E Sbjct: 542 NGFQYRIDSIRGFDFFPQTHHVE 564 >gi|227877027|ref|ZP_03995119.1| TrmA family tRNA (uracil-5-)-methyltransferase [Lactobacillus crispatus JV-V01] gi|256844662|ref|ZP_05550147.1| RNA methyltransferase [Lactobacillus crispatus 125-2-CHN] gi|227863398|gb|EEJ70825.1| TrmA family tRNA (uracil-5-)-methyltransferase [Lactobacillus crispatus JV-V01] gi|256613203|gb|EEU18407.1| RNA methyltransferase [Lactobacillus crispatus 125-2-CHN] Length = 449 Score = 72.8 bits (177), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 59/217 (27%), Positives = 102/217 (47%), Gaps = 20/217 (9%) Query: 157 KTKICLDR-DYV---DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQG 211 KT + L + DY+ ++++T L +R SF Q N+ + + + A G Sbjct: 244 KTNVILGKKDYLVFGNDQITDQIGDLKFRISPQSFFQINSLQTPRLYDLAIKQADLGSDD 303 Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271 +++ Y G G L +A+H V +E+ + +++ A+ N N + N K ++E Sbjct: 304 VVIDAYSGIGTIGLSVAKHVKAVRGIEVVRDAIKDAKDNAELNGIENAKYYLGKAEEI-- 361 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLC 329 M R + D+ +FVDPPR GL + V+ P ++YISCNP ++ Sbjct: 362 -MPRWAKKGMKTDV---------VFVDPPRKGLTPEFINATVKTGPKKVVYISCNPATMI 411 Query: 330 RDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRK 365 RDL + + +R+ D FP T H+E +L +K Sbjct: 412 RDLLLFQEQGYEFKRIDPVDMFPQTPHVEAVTVLTKK 448 >gi|319654336|ref|ZP_08008424.1| YefA protein [Bacillus sp. 2_A_57_CT2] gi|317394036|gb|EFV74786.1| YefA protein [Bacillus sp. 2_A_57_CT2] Length = 460 Score = 72.8 bits (177), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 47/149 (31%), Positives = 69/149 (46%), Gaps = 17/149 (11%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G SL LA+ V VEI ++E A+ N N + N ++E Sbjct: 314 VIDAYCGIGTISLFLAQKAKEVFGVEIVPEAIEDAKRNADLNGMTNASFAVGKAEEV--- 370 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330 + D + + VDPPR G D+A + + + ++Y+SCNP +L R Sbjct: 371 ---------IPDWYKKGNTAEVLVVDPPRKGCDEALLKTILSMKPKKVVYVSCNPGTLAR 421 Query: 331 DLSIL--STTHTIERLALFDQFPYTRHME 357 DL IL TIE + D FP T H E Sbjct: 422 DLRILEDGGYRTIE-VQPVDMFPQTMHCE 449 >gi|329955143|ref|ZP_08296100.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides clarus YIT 12056] gi|328526142|gb|EGF53161.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides clarus YIT 12056] Length = 475 Score = 72.8 bits (177), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 58/205 (28%), Positives = 94/205 (45%), Gaps = 28/205 (13%) Query: 172 TVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGDLL--ELYCGNG 221 T G+ I+ ++E SF Q N+ + L V G+ G+ L +LY G G Sbjct: 279 TFKGKDHIFEEMEGLRFKVGPKSFYQTNSK-QAYNLYKVARNFAGLTGNELVYDLYTGTG 337 Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE-FTQAMRREREFN 280 + +++ +V+ +E ++E A+ N N + N K+ TQ Sbjct: 338 TIANFVSKQARQVIGIEYVPEAIEDAKVNAEINGIKNTLFFAGDMKDMLTQDF------- 390 Query: 281 RLKDIDIHSY-RFKTIFVDPPRSGLDDATVGMVQ-AYPH-ILYISCNPDSLCRDLSILST 337 I+ Y R I DPPR+G+ V ++ A P I+Y+SCNP + RDL +L Sbjct: 391 ------INEYGRPDVIITDPPRAGMHQDVVDVILFAEPKRIVYVSCNPATQARDLQLLDA 444 Query: 338 THTIERLALFDQFPYTRHMECGVLL 362 + ++ + D FP+T H+E VLL Sbjct: 445 KYKVKAVQPVDMFPHTHHVENVVLL 469 >gi|241895373|ref|ZP_04782669.1| 23S rRNA (uracil-5-)-methyltransferase [Weissella paramesenteroides ATCC 33313] gi|241871347|gb|EER75098.1| 23S rRNA (uracil-5-)-methyltransferase [Weissella paramesenteroides ATCC 33313] Length = 483 Score = 72.8 bits (177), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 88/384 (22%), Positives = 159/384 (41%), Gaps = 47/384 (12%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFR-------SEPIHYRMRAEFHIWHDGDDLYHIM 62 Y+ QL K D +RQ + ++ ++ +P YR +A+F + +L M Sbjct: 119 YDGQLTFKQDVIRQALEKYKPAGYAHYKLLPTIGMDDPKEYRNKAQFPVREVDGELAVGM 178 Query: 63 FDQQTKERMRIDYFM---PGSLLINALMIEMMATIRL--------EPLLRAKLFQIDYLT 111 + + + + + + P +L + + +++A ++L + +++ + ++ T Sbjct: 179 YKRHSHKLVDLPVVTTQHPATLKVVRGVRDILADMQLPIYNERKNKGIVKTLIARVSEST 238 Query: 112 SQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD-------R 164 IVT R L DA E R+ AL Q I R + I D Sbjct: 239 GDVQLTIVT--NGRSLPDA-DELINRIHQALPEVVSIHQNINRGQSSLIWGDDTRQIWGE 295 Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNF 223 DY+ E + G+T ++ +F Q N + + + A + D L++ Y G G Sbjct: 296 DYITEEIN--GKT--FKLSPRAFLQLNPRQTQRLYQEAIKALDLTKADKLIDAYSGVGTI 351 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 + LA H V ++ S++ A N NHV N +++E +E Sbjct: 352 GISLADHAGEVRGMDTVAESIDDANENAIDNHVTNATYYVGAAEELIPQWTQE------- 404 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDA-TVGMVQAYPH-ILYISCNPDSLCRDLSILSTTHTI 341 + + VDPPR+GLD A +++ P +Y+SCN +L RDL L+ + + Sbjct: 405 -----GWIADAVVVDPPRTGLDIALRQTILETKPEKFVYVSCNASTLARDLVDLAKVYRV 459 Query: 342 ERLALFDQFPYTRHMECGVLLVRK 365 + + D FP T E V +K Sbjct: 460 DYIQSIDMFPQTARWEGIVKFTKK 483 >gi|50914683|ref|YP_060655.1| tRNA (Uracil-5-) -methyltransferase [Streptococcus pyogenes MGAS10394] gi|73920514|sp|Q5XAU1|Y1337_STRP6 RecName: Full=Uncharacterized RNA methyltransferase M6_Spy1337 gi|50903757|gb|AAT87472.1| tRNA (Uracil-5-) -methyltransferase [Streptococcus pyogenes MGAS10394] Length = 451 Score = 72.8 bits (177), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 87/382 (22%), Positives = 155/382 (40%), Gaps = 46/382 (12%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFR-------SEPIHYRMRAEFHIWHDGDDLYHIM 62 Y +QL K D +RQ + F+ + F +P HYR + +F + G + + Sbjct: 89 YPKQLDFKDDVIRQALKKFKPTGYEQFEIRPTLGMKKPDHYRAKLQFQLRSFGGTVKAGL 148 Query: 63 FDQQTKERMRIDYFMPGSLLINALM---IEMMATIRLEPLLRAKLFQIDYL----TSQSD 115 F Q + + ID + L ++ +++ +L K+ I + SD Sbjct: 149 FSQGSHRLVPIDNCLVQDQLTQDIINKITQLVDKYKLPIYNERKIAGIRTIMVRKAQASD 208 Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIG-RANKTKICLDRDYVDERLTVA 174 Q + ++ + + A R L Q++ + +N +K Y DE + Sbjct: 209 QVQIIVVSSKEVRLA------RFIGELTKAFPQVKTVALNSNCSK--SSEIYGDETEILW 260 Query: 175 GRTLIYRQI--------ENSFTQPNAG-INVHMLEWVLAATKGIQGDLLELYCGNGNFSL 225 G+ I+ ++ +F Q N V E V A G + +++ YCG G+ Sbjct: 261 GQEAIHEEVLDYGFALSPRAFYQLNPQQTEVLYGEVVKALDVGSKDHIIDAYCGVGSIGF 320 Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285 A V ++I ++E A+ N + +N + +A + E + Sbjct: 321 AFAGKVKSVRGMDIIPEAIEDAQKNAKSMGFDNA---------YYEAGKAEDIIPKWYK- 370 Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTTHTIER 343 YR I VDPPR+GLDD + + Y ++Y+SCN +L RDL L+ + + Sbjct: 371 --QGYRADAIIVDPPRTGLDDKLLKTILHYQPKQMVYVSCNTSTLARDLVQLTKIYDVHY 428 Query: 344 LALFDQFPYTRHMECGVLLVRK 365 + D FP+T E V L ++ Sbjct: 429 IQSVDMFPHTARTEAVVKLQKR 450 >gi|314966734|gb|EFT10833.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA [Propionibacterium acnes HL082PA2] gi|327327560|gb|EGE69336.1| putative RNA methyltransferase [Propionibacterium acnes HL103PA1] Length = 393 Score = 72.8 bits (177), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 63/221 (28%), Positives = 96/221 (43%), Gaps = 36/221 (16%) Query: 161 CLDRD-----YVDERLTVAGRTLI-------YRQIENSFTQPNAGINVHMLEWVLAATKG 208 CL D D +L G T+ ++ F Q + G + + V+ K Sbjct: 192 CLSEDPEVSVIADGQLVAGGETMTAHVGQRRWKVGAGGFWQMHPGAAEALADAVIGGLKP 251 Query: 209 IQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267 QGD L+LYCG G F+ +LA RV VE+++ +V AR N+ Sbjct: 252 QQGDEALDLYCGVGLFAGLLADRGVRVRGVEVSRQAVALARRNVPGG------------- 298 Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNP 325 FT A R ER R+ + + + +DPPR G V + + P I +++C+P Sbjct: 299 RFT-AGRVERVLPRM------APKANIVVLDPPRRGARKTVVQAVARTSPRAIAHVACDP 351 Query: 326 DSLCRDLSILSTTHTIER-LALFDQFPYTRHMECGVLLVRK 365 +L RDL + + R + FD FP T H+E +L K Sbjct: 352 AALARDLHLFDVNGYLPRSIRAFDVFPMTHHVEAVAILEPK 392 >gi|302387197|ref|YP_003823019.1| RNA methyltransferase, TrmA family [Clostridium saccharolyticum WM1] gi|302197825|gb|ADL05396.1| RNA methyltransferase, TrmA family [Clostridium saccharolyticum WM1] Length = 563 Score = 72.8 bits (177), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 54/219 (24%), Positives = 98/219 (44%), Gaps = 22/219 (10%) Query: 155 ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-- 212 +K + + Y+++ L +R SF Q N + +L G+ G Sbjct: 359 GDKEHVLFGKGYIEDILC----GCRFRISSKSFYQVNP-VQTEVLYQKAIEAAGLTGKER 413 Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G +V +++ + V+ VE+ + +V+ A N N + N++ + +F Sbjct: 414 VIDAYCGIGTIGIVASKYANEVIGVELNRDAVKDAVENAKINGIKNIRFFCNDAGKFMMN 473 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330 M E +D+ +F+DPPRSG + + V ++Y+SC P++L R Sbjct: 474 MAEIGEH-----VDV-------VFMDPPRSGSTEEFIDSVAKIRPEKVIYVSCGPETLAR 521 Query: 331 DLSILSTTHTIERLA-LFDQFPYTRHMECGVLLVRKPSG 368 DL ++ D FP T H+E +L+ R SG Sbjct: 522 DLGYFRKKGYEAKMGWGVDMFPATSHVEAIILMTRSGSG 560 >gi|327314509|ref|YP_004329946.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella denticola F0289] gi|326945121|gb|AEA21006.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella denticola F0289] Length = 478 Score = 72.8 bits (177), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 52/194 (26%), Positives = 89/194 (45%), Gaps = 16/194 (8%) Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL--ELYCGNGNFSLVLARHFDRVL 235 L ++ SF Q N H+ V A + G+ L +LY G G + +AR+ +V+ Sbjct: 295 LKFKVGPKSFYQTNTEQAYHLYS-VARAFAALTGNELVYDLYTGTGTIANFVARNARKVI 353 Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295 +E ++E A+ N N ++N K+ +D I Sbjct: 354 GIEYVPEAIEDAKVNAEINKIDNTLFYAGDMKDILT-----------EDFICRHGHPDVI 402 Query: 296 FVDPPRSGLDDATVGMV-QAYPH-ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYT 353 DPPR+G+ + ++ A P I+Y+SCNP + RDL++L + + + D FP+T Sbjct: 403 ITDPPRAGMHQDVISVILGASPKRIVYVSCNPATQARDLALLDADYRVAAVQPVDMFPHT 462 Query: 354 RHMECGVLLVRKPS 367 H+E VLL ++ + Sbjct: 463 PHVENVVLLEKREA 476 >gi|307710372|ref|ZP_07646812.1| RNA methyltransferase, TrmA family [Streptococcus mitis SK564] gi|307618849|gb|EFN97985.1| RNA methyltransferase, TrmA family [Streptococcus mitis SK564] Length = 367 Score = 72.8 bits (177), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 43/155 (27%), Positives = 70/155 (45%), Gaps = 14/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L++ YCG G A+ + ++I ++E A+ N +N +++E Sbjct: 224 LIDAYCGVGTIGFAFAKKVKTLRGMDIIPEAIEDAKRNAKRMGFDNTHYEAGTAEEIIPR 283 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330 +E YR + VDPPR+GLDD + + Y ++YISCN +L R Sbjct: 284 WYKE------------GYRADALIVDPPRTGLDDKLLDTILTYVPEKMVYISCNVSTLAR 331 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 DL L + + + D FP+T E V L++K Sbjct: 332 DLGRLVEVYDLHYIQSVDMFPHTARTEAVVKLIKK 366 >gi|295692415|ref|YP_003601025.1| RNA methyltransferase [Lactobacillus crispatus ST1] gi|295030521|emb|CBL50000.1| RNA methyltransferase [Lactobacillus crispatus ST1] Length = 449 Score = 72.8 bits (177), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 59/217 (27%), Positives = 102/217 (47%), Gaps = 20/217 (9%) Query: 157 KTKICLDR-DYV---DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQG 211 KT + L + DY+ ++++T L +R SF Q N+ + + + A G Sbjct: 244 KTNVILGKKDYLVFGNDQITDQIGDLKFRISPQSFFQINSLQTPRLYDLAIKQADLGSDD 303 Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271 +++ Y G G L +A+H V +E+ + +++ A+ N N + N K ++E Sbjct: 304 VVIDAYSGIGTIGLSVAKHVKAVRGIEVVRDAIKDAKDNAELNGIENAKYYLGKAEEI-- 361 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLC 329 M R + D+ +FVDPPR GL + V+ P ++YISCNP ++ Sbjct: 362 -MPRWAKKGMKTDV---------VFVDPPRKGLTPEFINATVKTGPKKVVYISCNPATMI 411 Query: 330 RDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRK 365 RDL + + +R+ D FP T H+E +L +K Sbjct: 412 RDLLLFQEQGYEFKRIDPVDMFPQTPHVEAVTVLTKK 448 >gi|271968013|ref|YP_003342209.1| 23S rRNA (uracil-5-)-methyltransferase [Streptosporangium roseum DSM 43021] gi|270511188|gb|ACZ89466.1| 23S rRNA (uracil-5-)-methyltransferase [Streptosporangium roseum DSM 43021] Length = 415 Score = 72.8 bits (177), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 66/213 (30%), Positives = 100/213 (46%), Gaps = 23/213 (10%) Query: 156 NKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LL 214 +T++ R+++ ER V R ++ + F Q + G +L VL G+ L Sbjct: 217 GRTRVVHGRNHLTER--VGDRD--FQVTGSGFWQVHPGAAATLLATVLEFAAPQPGEWAL 272 Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA-M 273 +LYCG G F+ LA E P E A + + + V V+ + ++ QA Sbjct: 273 DLYCGVGLFAAGLA---------EAVGP--EGAVFGVESEAVA-VRDAERNLRDLPQARF 320 Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRD 331 R R N L I R + VDPPR+GL V V I+Y+SC+P +L RD Sbjct: 321 ARGRVENALDRFGIE--RADLVVVDPPRAGLGREVVDRVATLQAGRIVYVSCDPATLARD 378 Query: 332 LSILST-THTIERLALFDQFPYTRHMECGVLLV 363 ++ L+ +++ L FD FP T H+EC LLV Sbjct: 379 IAWLADHGYSLADLRAFDAFPMTHHVECVALLV 411 >gi|289550385|ref|YP_003471289.1| RNA methyltransferase, TrmA family [Staphylococcus lugdunensis HKU09-01] gi|289179917|gb|ADC87162.1| RNA methyltransferase, TrmA family [Staphylococcus lugdunensis HKU09-01] Length = 461 Score = 72.4 bits (176), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 44/155 (28%), Positives = 73/155 (47%), Gaps = 14/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +L+ YCG G L +A V VE+ +++ AR N N ++N V +++ Sbjct: 316 VLDTYCGIGTIGLYMAPVAKHVYGVEVVPSAIKDARQNALVNDLHNTTFVCGKAEDVIMD 375 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330 +RE + + VDPPR G + + ++ P I+YISCNP + R Sbjct: 376 WQRE------------GIQPDVVMVDPPRKGCEAQFIQTLLDLNPERIVYISCNPSTQQR 423 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 D +L+T + ++ + D FP T H+E L +K Sbjct: 424 DAHMLATQYDLKEITPVDMFPQTTHIETVALFKKK 458 >gi|255549690|ref|XP_002515896.1| RNA m5u methyltransferase, putative [Ricinus communis] gi|223544801|gb|EEF46316.1| RNA m5u methyltransferase, putative [Ricinus communis] Length = 577 Score = 72.4 bits (176), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 57/212 (26%), Positives = 87/212 (41%), Gaps = 28/212 (13%) Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD----LLELYCGNG 221 Y +T R L ++ NSF Q N +L ++ G++GD +L+L+CG G Sbjct: 376 YGKSTITEILRGLTFQISANSFFQTNTR-QAEVLYKLIEDCAGLRGDGSEIVLDLFCGTG 434 Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281 L LA V E+ ++ AR N N + N V+ + + + N Sbjct: 435 TIGLTLAGRAKHVYGYEVVPQAISDARRNAELNGITNATFVQGDLNKISDSFG-----NN 489 Query: 282 LKDIDIHSYRFKTIFVDPPRSG--LDDATVGMVQAYPHILYISCNPDSLCRDLSILS--- 336 DI + DP R G + + P I+Y+SCNP + RDL L Sbjct: 490 FPKPDI-------VISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGV 542 Query: 337 ------TTHTIERLALFDQFPYTRHMECGVLL 362 + ++ L D FP+T H+EC LL Sbjct: 543 EEQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 574 >gi|160884289|ref|ZP_02065292.1| hypothetical protein BACOVA_02267 [Bacteroides ovatus ATCC 8483] gi|156110028|gb|EDO11773.1| hypothetical protein BACOVA_02267 [Bacteroides ovatus ATCC 8483] Length = 472 Score = 72.4 bits (176), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 58/201 (28%), Positives = 93/201 (46%), Gaps = 26/201 (12%) Query: 175 GRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGDLL--ELYCGNGNFS 224 G+ I+ ++E SF Q N+ + L V G+ G+ L +LY G G + Sbjct: 282 GKDHIFEEMEGLRFKVGPKSFYQTNSE-QAYNLYKVAREFAGLTGNELVYDLYTGTGTIA 340 Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE-FTQAMRREREFNRLK 283 ++R +V+ +E ++E A+ N N + N K+ TQ Sbjct: 341 NFVSRQARQVIGIEYVPEAIEDAKVNAEINDIKNALFYAGDMKDILTQDF---------- 390 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQ-AYPH-ILYISCNPDSLCRDLSILSTTHTI 341 I+ H R I DPPR+G+ V ++ A P I+Y+SCNP + RDL +L + + Sbjct: 391 -INQHG-RPDVIITDPPRAGMHQDVVDVILFAEPKRIVYVSCNPATQARDLQLLDEKYKV 448 Query: 342 ERLALFDQFPYTRHMECGVLL 362 + + D FP+T H+E VLL Sbjct: 449 KAIQPVDMFPHTHHVENVVLL 469 >gi|320449579|ref|YP_004201675.1| tRNA (uracil-5-)-methyltransferase superfamily [Thermus scotoductus SA-01] gi|320149748|gb|ADW21126.1| tRNA (uracil-5-)-methyltransferase superfamily [Thermus scotoductus SA-01] Length = 409 Score = 72.4 bits (176), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 57/181 (31%), Positives = 89/181 (49%), Gaps = 21/181 (11%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 SF+Q N +LE L G + LELY G+G FSL+LA F V+AVEI+K Sbjct: 242 ESFSQVNPLAMGELLEEALNLVSGGK-RALELYAGSGLFSLLLAPRFQEVVAVEISK--- 297 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 EA R A ++ VR + +A R RF + +DPPR+GL Sbjct: 298 EAERRGEADRRRLGIEHVRFHRGDAKEA----RNLG----------RFDLVVLDPPRTGL 343 Query: 305 D-DATVGMVQAYP-HILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVL 361 + ++++ P +LY++C+P + RD+ ++ + + +D FP+T H+E L Sbjct: 344 SPEVRAYLLKSRPKEVLYVACDPATWARDVGELVGGGYQLAFARPYDFFPFTHHVEVLSL 403 Query: 362 L 362 L Sbjct: 404 L 404 >gi|297617338|ref|YP_003702497.1| RNA methyltransferase, TrmA family [Syntrophothermus lipocalidus DSM 12680] gi|297145175|gb|ADI01932.1| RNA methyltransferase, TrmA family [Syntrophothermus lipocalidus DSM 12680] Length = 458 Score = 72.4 bits (176), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 54/163 (33%), Positives = 81/163 (49%), Gaps = 23/163 (14%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF--T 270 +L+ Y G G +L LA +V+AVE + +V A+ N N + NV+ + +++ Sbjct: 312 VLDAYSGVGTIALFLAERAKKVIAVEENEKAVADAQKNARGNGIKNVRFIAQRVEDWVTN 371 Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD----DATVGMVQAYPHILYISCNPD 326 A+ ER D+ + VDPPR GL+ A V M A ++Y+SCNP Sbjct: 372 AALDHER-----PDVAV---------VDPPRQGLNRGFLQALVTMSPA--RLVYVSCNPA 415 Query: 327 SLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVRKPSG 368 +L RDL L+ +TI + D FP T H+E VLL + G Sbjct: 416 TLARDLGHLANQGYTINAVQPVDMFPQTGHVETVVLLKKNNRG 458 >gi|86607994|ref|YP_476756.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Synechococcus sp. JA-2-3B'a(2-13)] gi|86556536|gb|ABD01493.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Synechococcus sp. JA-2-3B'a(2-13)] Length = 464 Score = 72.4 bits (176), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 58/186 (31%), Positives = 86/186 (46%), Gaps = 23/186 (12%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 SF Q N W+ A ++G+ +L+ YCG G +L+LA+ R + VE Sbjct: 295 TSFFQVNTEQAEAFFTWI-ADQLNLRGEETILDAYCGIGTLTLLLAQRAKRAMGVEALPE 353 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302 +V ARYN N + +S +F Q E+ L DI + +DPPR Sbjct: 354 AVAQARYNAQFNGI--------ASAQFFQGT-VEQVLPTLPPADI-------VVLDPPRR 397 Query: 303 GLDDATVGMVQAY--PHILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTRHMEC 358 G D + ++ P I+YISC+P +L RDL IL ++ + + D FP T H+E Sbjct: 398 GCDRQVLETLKLRRPPRIVYISCHPATLARDLQILLAEGSYRLTQWRAADFFPQTGHVEG 457 Query: 359 GVLLVR 364 L R Sbjct: 458 VAFLER 463 >gi|328885599|emb|CCA58838.1| RNA methyltransferase, TrmA family [Streptomyces venezuelae ATCC 10712] Length = 442 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 61/206 (29%), Positives = 94/206 (45%), Gaps = 31/206 (15%) Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGN 222 R+ DER YR F Q + ++ V+ +GD L+LYCG G Sbjct: 254 RERADER--------TYRVGNGGFWQVHPKAAQTLMLAVMQGLTPRKGDTALDLYCGVGL 305 Query: 223 FSLVLARHFDR---VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279 F+ LA VL +E K +VE AR+N+AA VR+ + + R Sbjct: 306 FAGALADRVGEKGAVLGIESGKRAVEDARHNLAA-----FPRVRIEQGKVESVLPR---- 356 Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILST 337 + ++D+ I +DPPR+G TV + + I Y++C+P +L RD+S + Sbjct: 357 TGITEVDL-------IVLDPPRAGAGKQTVHHLASLGARRIAYVACDPAALARDISYFAE 409 Query: 338 -THTIERLALFDQFPYTRHMECGVLL 362 + + L FD FP T H+EC +L Sbjct: 410 RGYKVRTLRAFDLFPMTHHVECVAIL 435 >gi|313632848|gb|EFR99799.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria seeligeri FSL N1-067] Length = 453 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 45/153 (29%), Positives = 74/153 (48%), Gaps = 15/153 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G+ SL LA+ V VEI +++ AR N N+++N ++E Sbjct: 310 VIDAYCGIGSISLCLAKKAKHVYGVEIVDQAIQDARANAELNNLSNTTFETGKAEEVIPT 369 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330 + + D+ + VDPPR G D+ + + A ++Y+SCNP +L R Sbjct: 370 WYKA---GIVADV---------LVVDPPRKGCDEKLLQTILAMKPKKVVYVSCNPGTLAR 417 Query: 331 DLSILS-TTHTIERLALFDQFPYTRHMECGVLL 362 D+ ILS + + D FP T H+E +L Sbjct: 418 DMKILSDGGYEANLVQPVDMFPMTTHIEAVTVL 450 >gi|291514875|emb|CBK64085.1| 23S rRNA m(5)U-1939 methyltransferase [Alistipes shahii WAL 8301] Length = 469 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 49/159 (30%), Positives = 78/159 (49%), Gaps = 16/159 (10%) Query: 211 GDLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269 GD+L +LY G G + A RV+ VE ++ A+ N N + N K Sbjct: 323 GDVLYDLYTGTGTIANFCAARCARVVGVEYVPEAIADAKVNSELNGIENTVFYAGDMKAV 382 Query: 270 TQAMRREREFNRLKDIDIHSY-RFKTIFVDPPRSGLDDATVGMV-QAYPH-ILYISCNPD 326 L D + + R I +DPPR+G+D+ + ++ +A P I+Y+SCNP Sbjct: 383 ------------LDDGFVAANGRPDVIILDPPRAGVDEPVIEVILRAAPERIVYVSCNPA 430 Query: 327 SLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 + RDL ++ + +E + D FP+T H+E V LVR+ Sbjct: 431 TQARDLQLMDAAYRVEAVQPVDMFPHTHHVENVVKLVRR 469 >gi|86143081|ref|ZP_01061503.1| putative RNA methyltransferase [Leeuwenhoekiella blandensis MED217] gi|85830526|gb|EAQ48985.1| putative RNA methyltransferase [Leeuwenhoekiella blandensis MED217] Length = 457 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 58/213 (27%), Positives = 98/213 (46%), Gaps = 26/213 (12%) Query: 163 DRDYVDERLTVAGRTLIYRQIEN--------SFTQPNA--GINVHMLEWVLAATKGIQGD 212 D Y + + AGR I+ ++E SF Q N+ ++ + A KG + Sbjct: 255 DTIYDQDIICYAGRDHIFEEMEGLKFKINAKSFYQTNSEQAYELYKITRDFAELKGDE-T 313 Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + +LY G G + +A+ +V+ VE ++ AA+ N N + NV+ + Sbjct: 314 VFDLYTGTGTIAQFVAKKAKKVIGVEAVPDAIIAAKENAQLNEIENVEF-------YVGD 366 Query: 273 MRREREFNRLKDIDIHSY-RFKTIFVDPPRSGL-DDATVGMVQ-AYPHILYISCNPDSLC 329 M+ N D I + + + DPPR G+ D +++ I+Y+SCN + Sbjct: 367 MK-----NVFNDAFIAQHGQPDVVITDPPRDGMHKDVVAQLIKIKADRIVYVSCNSATQA 421 Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362 RDL++L + +ER+ D FP T H+E VLL Sbjct: 422 RDLALLDPYYKVERVQPVDMFPQTHHVENVVLL 454 >gi|289167359|ref|YP_003445628.1| tRNA methyltransferase, TrmA family [Streptococcus mitis B6] gi|288906926|emb|CBJ21760.1| tRNA methyltransferase, TrmA family [Streptococcus mitis B6] Length = 440 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 45/157 (28%), Positives = 71/157 (45%), Gaps = 14/157 (8%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L++ YCG G A+ + ++I ++E A+ N +N +++E Sbjct: 293 LIDAYCGVGTIGFAFAKKVKTLRGMDIIPEAIEDAKRNAKRMGFDNTHYEVGTAEEIIPR 352 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330 +E YR + VDPPR+GLDD + + Y ++YISCN +L R Sbjct: 353 WYKE------------GYRADALIVDPPRTGLDDKLLDTILTYVPEKMVYISCNVSTLAR 400 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRKPS 367 DL L + I + D FP+T E V L++K S Sbjct: 401 DLVRLVEVYDIHYIQSVDMFPHTARTEAVVKLIKKVS 437 >gi|144898320|emb|CAM75184.1| RNA SAM-dependent methyltransferase, TrmA family [Magnetospirillum gryphiswaldense MSR-1] Length = 441 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 55/183 (30%), Positives = 87/183 (47%), Gaps = 18/183 (9%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 +F QP + + V ++ + +LYCG G+F+ LA V AVE + + Sbjct: 275 GNFLQPTEAGEKAIAQLVCTGIGKVKA-VADLYCGCGSFTFPLAASGAAVHAVEGDEAPI 333 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 A AA ++ +KI + E RR LK +++ + DPPR+G Sbjct: 334 RALE---AAANMAGLKI----TTETRDLARRPLLPQELK-------KYQAVVFDPPRAGA 379 Query: 305 DDATVGMVQAYPHILY-ISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLL 362 + QA P I+ +SCNP +L RDL IL + +E + DQFP++ H+E V + Sbjct: 380 QSQAEYLAQAAPAIVVAVSCNPATLARDLQILVKGGYQVESITPIDQFPHSAHLEA-VAV 438 Query: 363 VRK 365 +RK Sbjct: 439 LRK 441 >gi|325690909|gb|EGD32909.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis SK115] Length = 456 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 44/157 (28%), Positives = 71/157 (45%), Gaps = 14/157 (8%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L++ YCG G A+ + ++I ++E A+ N +N +++E Sbjct: 308 LIDAYCGVGTIGFAFAKRVKSLRGMDIIPEAIEDAKRNAKRMGFDNTLYEAGTAEEIIPR 367 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCR 330 E YR + VDPPR+GLDD +G + Y ++Y+SCN +L R Sbjct: 368 WYAE------------GYRADALIVDPPRTGLDDKLLGTIVRYAPEKMVYVSCNVSTLAR 415 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRKPS 367 DL LS + + + D FP+T E V L ++ S Sbjct: 416 DLVKLSQVYDVHYIQSVDMFPHTARTEAVVKLSKRDS 452 >gi|118497214|ref|YP_898264.1| 23S rRNA 5-methyluridine methyltransferase [Francisella tularensis subsp. novicida U112] gi|194323513|ref|ZP_03057290.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Francisella tularensis subsp. novicida FTE] gi|143581148|sp|A0Q5J5|RUMA_FRATN RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|118423120|gb|ABK89510.1| RNA methyltransferase, trmA family [Francisella novicida U112] gi|194322368|gb|EDX19849.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Francisella tularensis subsp. novicida FTE] Length = 449 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 47/177 (26%), Positives = 87/177 (49%), Gaps = 15/177 (8%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 N FTQ N IN M++ + + D +++L+CG GNF+L +++H V+ VE Sbjct: 276 NDFTQVNNDINKKMIKRAIELLDISENDSIIDLFCGLGNFTLPISQHAKTVIGVEGEPTM 335 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 V+ A+ N++ NV + ++ + FN ++ + + +DPPR+G Sbjct: 336 VKRAKETADNNNITNVNFY---AANLFESFEDKEWFN--------NFEYNKMLLDPPRAG 384 Query: 304 LDDATVGMVQ-AYPHILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTRHME 357 + + + I+Y+SC+ +L RD IL + + + + D FP+T H+E Sbjct: 385 AQEVCNNIEKFNVKRIVYVSCDTATLARDAGILVNNKDYKLISAGVMDMFPHTMHVE 441 >gi|306825259|ref|ZP_07458601.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304432695|gb|EFM35669.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 451 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 47/155 (30%), Positives = 78/155 (50%), Gaps = 15/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ Y G G L +A+H V VE+ +VE ++ N A N++ N V +++ A Sbjct: 308 VIDAYSGIGTIGLSVAKHVKEVYGVEVIPEAVENSQKNAALNNITNAHYVCDTAE---NA 364 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV--GMVQAYPHILYISCNPDSLCR 330 M+ N LK+ + I VDPPR GL ++ + I YISCN ++ R Sbjct: 365 MK-----NWLKE----GIQPTVILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMAR 415 Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364 D+ + + ++++ D FP T H+EC LLV+ Sbjct: 416 DIKLYQELGYELKKVQPVDLFPQTHHVECVALLVK 450 >gi|238784965|ref|ZP_04628964.1| 23S rRNA (uracil-5-)-methyltransferase rumB [Yersinia bercovieri ATCC 43970] gi|238714180|gb|EEQ06193.1| 23S rRNA (uracil-5-)-methyltransferase rumB [Yersinia bercovieri ATCC 43970] Length = 403 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 50/154 (32%), Positives = 76/154 (49%), Gaps = 18/154 (11%) Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271 + +L+CG G F L A ++ +EI+ ++ AR + + NV + S F Sbjct: 261 SMWDLFCGVGGFGLHCAGPETQLTGIEISAEAIACARQSADQLGLKNVNFAALDSTRFAT 320 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLC 329 A E + +L + V+PPR G+ + Q P ILY SCN +++ Sbjct: 321 A---EAQVPQL------------VLVNPPRRGIGAELCDYLTQMAPKFILYSSCNAETMA 365 Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363 +D+S L+ H IER+ LFD FP+T H E VLLV Sbjct: 366 KDISRLADYH-IERVQLFDLFPHTAHYEVLVLLV 398 >gi|119509344|ref|ZP_01628493.1| 23S rRNA methyltransferase/RumA [Nodularia spumigena CCY9414] gi|119465958|gb|EAW46846.1| 23S rRNA methyltransferase/RumA [Nodularia spumigena CCY9414] Length = 468 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 50/169 (29%), Positives = 83/169 (49%), Gaps = 21/169 (12%) Query: 202 VLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259 V+ + +QG L++ YCG G +L LA+ + + +E+ +V+ A N N +NNV Sbjct: 297 VIQSELNLQGQELLIDAYCGMGTLTLPLAKQVRQAIGIELQPEAVQQAIVNAQHNDINNV 356 Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH- 317 + ++ E + D+ + +DPPR G D A + ++++ P Sbjct: 357 TFQVGAVEKLLP------EMGIVPDV---------VLLDPPRKGCDRAVIDSLLRSKPSR 401 Query: 318 ILYISCNPDSLCRDLSILS--TTHTIERLALFDQFPYTRHMECGVLLVR 364 I+Y+SC +L RDL +L +TI R+ D FP T H+E LVR Sbjct: 402 IVYVSCKVATLARDLKLLCEDGQYTITRVQPADFFPQTAHVEAVAFLVR 450 >gi|319946766|ref|ZP_08021000.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus australis ATCC 700641] gi|319746814|gb|EFV99073.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus australis ATCC 700641] Length = 452 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 47/156 (30%), Positives = 79/156 (50%), Gaps = 15/156 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ Y G G L +A+H V VE+ +VE ++ N A N++ N V +++ A Sbjct: 308 VIDAYSGIGTIGLSVAKHVKEVYGVEVIPEAVENSQKNAALNNITNAHYVCDTAE---NA 364 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV--GMVQAYPHILYISCNPDSLCR 330 M+ N LK+ + I VDPPR GL ++ + I YISCN ++ R Sbjct: 365 MK-----NWLKE----GIQPTAILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMAR 415 Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVRK 365 D+ + + ++++ D FP T H+EC LLV++ Sbjct: 416 DIKLYQELGYELKKVQPVDLFPQTHHVECVSLLVKR 451 >gi|319787470|ref|YP_004146945.1| RNA methyltransferase, TrmA family [Pseudoxanthomonas suwonensis 11-1] gi|317465982|gb|ADV27714.1| RNA methyltransferase, TrmA family [Pseudoxanthomonas suwonensis 11-1] Length = 449 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 57/182 (31%), Positives = 81/182 (44%), Gaps = 16/182 (8%) Query: 187 FTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 F Q NA +N M+ L +L+L+CG GNF+L LAR V+ VE V Sbjct: 280 FIQVNARLNEKMIARALEMLDTSPDHRVLDLFCGLGNFTLPLARQVREVVGVEGDPGLVA 339 Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD 305 AR N N + N R + + TQ R F + +DPPRSG + Sbjct: 340 RARANAERNGLAN---ARFFAADLTQDQR---------GTPWMRQGFDRLLLDPPRSGAE 387 Query: 306 DATVGM-VQAYPHILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTRHMECGVLL 362 + + +Q I+Y+SC+P SL RD L + + + D FP+T H+E L Sbjct: 388 EVLKQLPLQDIDRIVYVSCHPGSLARDAGFLVNERGYRLVSAGVMDMFPHTAHVESIALF 447 Query: 363 VR 364 R Sbjct: 448 ER 449 >gi|307704007|ref|ZP_07640940.1| RNA methyltransferase, TrmA family [Streptococcus mitis SK597] gi|307622431|gb|EFO01435.1| RNA methyltransferase, TrmA family [Streptococcus mitis SK597] Length = 451 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 43/155 (27%), Positives = 71/155 (45%), Gaps = 14/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L++ YCG G A+ + ++I ++E A+ N +N+ +++E Sbjct: 308 LIDAYCGVGTIGFAFAKKVKTLRGMDIIPEAIEDAKRNAKRMGFDNIHYEAGTAEEIIPR 367 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330 +E YR + VDPPR+GLDD + + Y ++YISCN +L R Sbjct: 368 WYKE------------GYRADALIVDPPRTGLDDKLLDTILTYVPEKMVYISCNVSTLAR 415 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 DL L + + + D FP+T E V L++K Sbjct: 416 DLVRLVKVYDLHYIQSVDMFPHTARTEAVVKLIKK 450 >gi|218134835|ref|ZP_03463639.1| hypothetical protein BACPEC_02738 [Bacteroides pectinophilus ATCC 43243] gi|217990220|gb|EEC56231.1| hypothetical protein BACPEC_02738 [Bacteroides pectinophilus ATCC 43243] Length = 489 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 59/198 (29%), Positives = 91/198 (45%), Gaps = 19/198 (9%) Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAV 237 YR SF Q N M + VL + + G+ + +LYCG G SL LA++ +V V Sbjct: 288 YRISPLSFYQVNPVQTKRMYDKVLEYAQ-LTGNEAVWDLYCGIGTISLFLAKNAKKVYGV 346 Query: 238 EIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT--- 294 EI ++E A N A N+++N + ++E + + D S R Sbjct: 347 EIVPQAIEDAGNNAALNNIDNAQFFVGKAEEVVPEF-----YKNGGEGDTDSARSGADML 401 Query: 295 ----IFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL--STTHTIERLAL 346 I VDPPR G D + + + A P I+Y+SC+ +L RDL L S + + + Sbjct: 402 RPDVIVVDPPRKGCDTSLLDTMLEMAPPRIVYVSCDSATLARDLKYLRESGRYEVRDVQC 461 Query: 347 FDQFPYTRHMECGVLLVR 364 +D F H+E V + R Sbjct: 462 YDNFCQGVHVETVVWMSR 479 >gi|182624472|ref|ZP_02952255.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium perfringens D str. JGS1721] gi|177910280|gb|EDT72661.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium perfringens D str. JGS1721] Length = 455 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 48/158 (30%), Positives = 75/158 (47%), Gaps = 17/158 (10%) Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271 ++ + YCG G +L L++ +V VEI +++ A N N V+NV+ S+ Sbjct: 311 EVFDAYCGTGTITLFLSQKAKKVYGVEIIPQAIDNAWINAKENKVDNVEFFVGESEVV-- 368 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLC 329 + D+ + + VDPPR G D + + I+Y+SC+P +L Sbjct: 369 ----------IPDLINKGVKADVVVVDPPRKGCDKKLLDAITNIDAKKIVYVSCDPSTLG 418 Query: 330 RDLSILSTT--HTIERLALFDQFPYTRHMECGVLLVRK 365 RDL+IL T+E + D FP T H+E V L RK Sbjct: 419 RDLAILEENGYKTLE-VQPVDMFPNTSHVETIVSLRRK 455 >gi|153949749|ref|YP_001401605.1| 23S rRNA methyluridine methyltransferase [Yersinia pseudotuberculosis IP 31758] gi|170024950|ref|YP_001721455.1| 23S rRNA methyluridine methyltransferase [Yersinia pseudotuberculosis YPIII] gi|167012649|sp|A7FK27|RUMB_YERP3 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName: Full=23S rRNA(M-5-U747)-methyltransferase gi|226725418|sp|B1JRJ4|RUMB_YERPY RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName: Full=23S rRNA(M-5-U747)-methyltransferase gi|152961244|gb|ABS48705.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Yersinia pseudotuberculosis IP 31758] gi|169751484|gb|ACA69002.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Yersinia pseudotuberculosis YPIII] Length = 376 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 47/154 (30%), Positives = 73/154 (47%), Gaps = 18/154 (11%) Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271 + +L+CG G F L A ++ +EI+ ++ AR + + NV + S F Sbjct: 236 SMWDLFCGVGGFGLHCAGPETQLTGIEISAEAIACARQSAEQLGLKNVSFAALDSTRFAT 295 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLC 329 A + E + V+PPR G+ + Q P ILY SCN +++ Sbjct: 296 AEAQIPEL---------------VLVNPPRRGIGRELCDYLSQMAPKFILYSSCNAETMA 340 Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363 +D+S+L+ H IER+ LFD FP+T H E LL Sbjct: 341 KDISLLAGYH-IERVQLFDMFPHTSHYEVLTLLA 373 >gi|188590211|ref|YP_001922461.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum E3 str. Alaska E43] gi|188500492|gb|ACD53628.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum E3 str. Alaska E43] Length = 455 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 45/156 (28%), Positives = 77/156 (49%), Gaps = 15/156 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + + YCG G +L L++ +V VEI +P++ A+ N N+V+NV+ S+E Sbjct: 312 VFDAYCGTGTITLFLSQKAKKVYGVEIIEPAIINAKENAKLNNVDNVEFFVGKSEEVIPT 371 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCR 330 + + + + VDPPR G D + ++ ++Y+SC+P +L R Sbjct: 372 LIND------------GIKADIVVVDPPRKGCDIKLLEAIEKVKPKKVVYVSCDPSTLSR 419 Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRK 365 DL IL + + + D FP T H+E V L++K Sbjct: 420 DLKILDEKGYKVVEIQPVDMFPQTSHIENVVKLIKK 455 >gi|306822481|ref|ZP_07455859.1| RNA methyltransferase [Bifidobacterium dentium ATCC 27679] gi|309801408|ref|ZP_07695535.1| TRAM domain protein [Bifidobacterium dentium JCVIHMP022] gi|304554026|gb|EFM41935.1| RNA methyltransferase [Bifidobacterium dentium ATCC 27679] gi|308221923|gb|EFO78208.1| TRAM domain protein [Bifidobacterium dentium JCVIHMP022] Length = 421 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 65/209 (31%), Positives = 100/209 (47%), Gaps = 26/209 (12%) Query: 169 ERLTVAGRTLIYRQIENSFTQ-----PNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGN 222 E++TVAGR Y F Q P A N H++ V G Q + +LY G+G Sbjct: 224 EKVTVAGRDFEYGVDAGGFWQMHRQAPIALTN-HVINLVRGELNGAQSACVWDLYSGSGL 282 Query: 223 FSLVLAR---HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279 F+L LA R+L+VE K +V A+ N+ H++NV + + + + + R Sbjct: 283 FTLPLASLAAERTRMLSVEGGKTAVRNAQRNLRHVHLDNVDV---RAGDVAKTLVNVR-- 337 Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILST 337 N L D+ + +DPPR+G G + ++YI+CNP SL RD + L+ Sbjct: 338 NDLARPDV-------VVLDPPRAGARAKVCGQIANSEARSVIYIACNPASLARDTATLAG 390 Query: 338 -THTIERLALFDQFPYTRHMECGVLLVRK 365 + + + FD +P T H+E V L RK Sbjct: 391 LGYELADIHAFDIYPTTHHVET-VALFRK 418 >gi|51595706|ref|YP_069897.1| 23S rRNA methyluridine methyltransferase [Yersinia pseudotuberculosis IP 32953] gi|186894780|ref|YP_001871892.1| 23S rRNA methyluridine methyltransferase [Yersinia pseudotuberculosis PB1/+] gi|116256324|sp|Q66CN7|RUMB_YERPS RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName: Full=23S rRNA(M-5-U747)-methyltransferase gi|226725416|sp|B2K9X0|RUMB_YERPB RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName: Full=23S rRNA(M-5-U747)-methyltransferase gi|51588988|emb|CAH20606.1| putative RNA methyltransferase [Yersinia pseudotuberculosis IP 32953] gi|186697806|gb|ACC88435.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Yersinia pseudotuberculosis PB1/+] Length = 376 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 47/154 (30%), Positives = 73/154 (47%), Gaps = 18/154 (11%) Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271 + +L+CG G F L A ++ +EI+ ++ AR + + NV + S F Sbjct: 236 SMWDLFCGVGGFGLHCAGPETQLTGIEISAEAIACARQSAEQLGLKNVSFAALDSTRFAT 295 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLC 329 A + E + V+PPR G+ + Q P ILY SCN +++ Sbjct: 296 AEAQIPEL---------------VLVNPPRRGIGRELCDYLSQMAPKFILYSSCNAETMA 340 Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363 +D+S+L+ H IER+ LFD FP+T H E LL Sbjct: 341 KDISLLAGYH-IERVQLFDMFPHTSHYEVLTLLA 373 >gi|315605794|ref|ZP_07880826.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Actinomyces sp. oral taxon 180 str. F0310] gi|315312492|gb|EFU60577.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Actinomyces sp. oral taxon 180 str. F0310] Length = 387 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 64/205 (31%), Positives = 94/205 (45%), Gaps = 29/205 (14%) Query: 171 LTVAGRTLIYRQIENSFTQPNAGINVHMLE----WV-LAATKG-IQGDLLELYCGNGNFS 224 LTV G L R SF Q NA + + E W L G + L +LYCG G F+ Sbjct: 198 LTVEGLALGPR----SFAQTNARVAAALYEQASRWARLPLPDGRVPEGLWDLYCGVGGFA 253 Query: 225 LVLARH-FDRVLAVEIAKPSVEAARYNIAANHVNNVK--IVRMSSKEFTQAMRREREFNR 281 L AR V VE++ ++ +A I A ++ R + T A R + + Sbjct: 254 LACARGGIPHVTGVEVSAGAISSA---ITAARTAGLRRDEARFICDDAT-AWARAQPAST 309 Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTH 339 + D+ I V+PPR G+ + P ++Y SCNP SL +DL+++ Sbjct: 310 VPDV---------IVVNPPRRGIGPDLAAYLNECGAPRVIYSSCNPASLAQDLTVMPALR 360 Query: 340 TIERLALFDQFPYTRHMECGVLLVR 364 +E +FD FP+T H+E VLL R Sbjct: 361 PVEGR-VFDMFPHTSHVEAAVLLER 384 >gi|219871135|ref|YP_002475510.1| 23S rRNA 5-methyluridine methyltransferase [Haemophilus parasuis SH0165] gi|219691339|gb|ACL32562.1| 23S rRNA 5-methyluridine methyltransferase [Haemophilus parasuis SH0165] Length = 436 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 43/144 (29%), Positives = 72/144 (50%), Gaps = 16/144 (11%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS-SKEFTQ 271 +L+L+CG GNF+L +A + V+ +E +P V A+ N N +NN K + K F Sbjct: 297 VLDLFCGMGNFTLPIAPFVEEVVGIEGVEPMVAQAKQNAQTNQINNAKFYQTDLDKPFVD 356 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH-ILYISCNPDSLCR 330 + FN+ +DP R+G A + + P I+Y+SCNP +L R Sbjct: 357 QPWAKAYFNK-------------ALLDPARNGAYFALDHLCELQPERIVYVSCNPATLVR 403 Query: 331 DL-SILSTTHTIERLALFDQFPYT 353 D +++ + + + A+ D FP+T Sbjct: 404 DAEKLIAKGYRLSQSAMIDMFPHT 427 >gi|254447150|ref|ZP_05060617.1| 23S rRNA (uracil-5-)-methyltransferase [gamma proteobacterium HTCC5015] gi|198263289|gb|EDY87567.1| 23S rRNA (uracil-5-)-methyltransferase [gamma proteobacterium HTCC5015] Length = 452 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 55/187 (29%), Positives = 83/187 (44%), Gaps = 22/187 (11%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 F+Q N G+N M+ + G +L+ +CG GNFSL LA +VL +E + Sbjct: 281 GEFSQANRGLNREMVRTAVEQLHVPPGAHVLDAFCGVGNFSLALANGGAKVLGLEGSDNM 340 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI---FVDPP 300 VE AR+N N + M N + I + I +DPP Sbjct: 341 VEKARHNARDNGFELCEFKTM---------------NLMHSDGIGRHTLDGIHHALLDPP 385 Query: 301 RSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHME 357 R G + + + +LYISCNP + RD +++ T++ + L+D FP+T H E Sbjct: 386 RDGASELCQRLAREPELQRVLYISCNPATFSRDAEHLVNGGFTLDTVQLWDLFPHTHHSE 445 Query: 358 CGVLLVR 364 L VR Sbjct: 446 VMGLFVR 452 >gi|153806599|ref|ZP_01959267.1| hypothetical protein BACCAC_00869 [Bacteroides caccae ATCC 43185] gi|149131276|gb|EDM22482.1| hypothetical protein BACCAC_00869 [Bacteroides caccae ATCC 43185] Length = 456 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 55/181 (30%), Positives = 87/181 (48%), Gaps = 16/181 (8%) Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDLL--ELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 SF Q N+ + L V G+ G+ L +LY G G + ++R +V+ +E + Sbjct: 285 SFYQTNSE-QAYNLYKVAREFAGLTGNELVYDLYTGTGTIANFVSRRARQVIGIEYVPEA 343 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 +E A+ N N + N K+ +EF I+ H R I DPPR+G Sbjct: 344 IEDAKVNAEINDIKNTLFYAGDMKDILT-----QEF-----INEHG-RPDVIITDPPRAG 392 Query: 304 LDDATVGMVQ-AYPH-ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVL 361 + V ++ A P I+Y+SCNP + RDL +L + ++ + D FP+T H+E VL Sbjct: 393 MHQDVVDVILFAEPKRIVYVSCNPATQARDLQLLDEKYKVKAVQPVDMFPHTHHVENVVL 452 Query: 362 L 362 L Sbjct: 453 L 453 >gi|37200429|dbj|BAC96255.1| SAM-dependent methyltransferase [Vibrio vulnificus YJ016] Length = 397 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 60/209 (28%), Positives = 104/209 (49%), Gaps = 29/209 (13%) Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML----EWVLAATKGIQGDLLELYC 218 D Y+ E G ++ R SF Q N + + +WV A K Q + +L+C Sbjct: 212 DAHYLLEEFN--GVPMVVR--PKSFFQTNPHVAAQLYATARDWV-AELKPRQ--MWDLFC 264 Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278 G G F+L A H ++V+ +EI + ++ +A+ + + N++ + S ++QA + + Sbjct: 265 GVGGFALHCAPHAEQVIGIEIEEEAINSAKLSAQQLGIGNLRFSALDSAAYSQAQTQAAD 324 Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILS 336 I V+PPR GL A ++ A +++Y SCNP ++ +DL+ L Sbjct: 325 L---------------ILVNPPRRGLGQALSEQLEQLAPQYLIYSSCNPVTMQQDLAHLP 369 Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVRK 365 ++ +ER FD FP+T H E +LLVR+ Sbjct: 370 -SYQVERAQWFDMFPHTDHAEVMMLLVRQ 397 >gi|171742570|ref|ZP_02918377.1| hypothetical protein BIFDEN_01683 [Bifidobacterium dentium ATCC 27678] gi|283456344|ref|YP_003360908.1| tRNA (Uracil-5-) -methyltransferase [Bifidobacterium dentium Bd1] gi|171278184|gb|EDT45845.1| hypothetical protein BIFDEN_01683 [Bifidobacterium dentium ATCC 27678] gi|283102978|gb|ADB10084.1| tRNA (Uracil-5-) -methyltransferase [Bifidobacterium dentium Bd1] Length = 421 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 65/209 (31%), Positives = 101/209 (48%), Gaps = 26/209 (12%) Query: 169 ERLTVAGRTLIYRQIENSFTQ-----PNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGN 222 E++TVAGR Y F Q P A N H+++ V G Q + +LY G+G Sbjct: 224 EKVTVAGRDFEYGVDAGGFWQMHRQAPIALTN-HVIDLVRRELNGAQSACVWDLYSGSGL 282 Query: 223 FSLVLAR---HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279 F+L LA R+L+VE K +V A+ N+ H++NV + + + + + R Sbjct: 283 FTLPLASLAAERTRMLSVEGGKTAVRNAQRNLRHVHLDNVDV---RAGDVAKTLGNVR-- 337 Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST 337 N L D+ + +DPPR+G G + ++YI+CNP SL RD + L+ Sbjct: 338 NDLARPDV-------VVLDPPRAGARAKVCGQIADSEARSVIYIACNPASLARDTATLAG 390 Query: 338 -THTIERLALFDQFPYTRHMECGVLLVRK 365 + + + FD +P T H+E V L RK Sbjct: 391 LGYELADIHAFDIYPTTHHVET-VALFRK 418 >gi|139473396|ref|YP_001128112.1| RNA methyltransferase [Streptococcus pyogenes str. Manfredo] gi|134271643|emb|CAM29874.1| putative RNA methyltransferase [Streptococcus pyogenes str. Manfredo] Length = 451 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 87/382 (22%), Positives = 155/382 (40%), Gaps = 46/382 (12%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFR-------SEPIHYRMRAEFHIWHDGDDLYHIM 62 Y +QL K D +RQ + F+ + F +P HYR + +F + G + + Sbjct: 89 YPKQLDFKDDVIRQALKKFKPTGYEQFEIRPTLGMKKPDHYRAKLQFQLRSFGGTVKAGL 148 Query: 63 FDQQTKERMRIDYFMPGSLLINALM---IEMMATIRLEPLLRAKLFQIDYL----TSQSD 115 F Q + + ID + L ++ +++ +L K+ I + SD Sbjct: 149 FSQGSHRLVPIDNCLVQDQLTQDIINKITQLVDKYKLPIYNERKIAGIRTIMVRKAQASD 208 Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIG-RANKTKICLDRDYVDERLTVA 174 Q + ++ + + A R L Q++ + +N +K Y DE + Sbjct: 209 QVQIIVVSSKEVRLA------RFIGELTKAFPQVKTVALNSNCSK--SSEIYGDETEILW 260 Query: 175 GRTLIYRQI--------ENSFTQPNAG-INVHMLEWVLAATKGIQGDLLELYCGNGNFSL 225 G+ I+ ++ +F Q N V E V A G + +++ YCG G+ Sbjct: 261 GQEAIHEEVLDYGFALSPRAFYQLNPQQTEVLYGEVVKALDVGSKDHIIDAYCGVGSIGF 320 Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285 A V ++I ++E A+ N + +N + +A + E + Sbjct: 321 AFAGKVKSVRGMDIIPEAIEDAQKNAKSMGFDNA---------YYEAGKAEDIIPKWYK- 370 Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTTHTIER 343 YR I VDPPR+GLDD + + Y ++Y+SCN +L RDL L+ + + Sbjct: 371 --QGYRADAIIVDPPRTGLDDKLLETILHYQPKQMVYVSCNTSTLARDLVQLTKIYDVHY 428 Query: 344 LALFDQFPYTRHMECGVLLVRK 365 + D FP+T E V L ++ Sbjct: 429 IQSVDMFPHTARTEAVVKLQKR 450 >gi|322372299|ref|ZP_08046835.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus sp. C150] gi|321277341|gb|EFX54410.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus sp. C150] Length = 452 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 44/156 (28%), Positives = 71/156 (45%), Gaps = 14/156 (8%) Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271 +L++ YCG G L A + ++I +++ AR N A + N +++ Sbjct: 308 NLIDAYCGVGTIGLAFANKVKDIRGMDIIPEAIDDARKNAEALGLENYHYEVGKAEDIIP 367 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLC 329 +E YR + VDPPR+GLDD + + Y ++Y+SCN +L Sbjct: 368 RWYKE------------GYRADALIVDPPRTGLDDKLLQTILEYVPEKMVYVSCNVSTLS 415 Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 RDL L+ + + + D FP+T E V L RK Sbjct: 416 RDLVSLTQAYEVNYIQSVDMFPHTARTEAVVKLTRK 451 >gi|163782302|ref|ZP_02177300.1| RNA methyltransferase (TrmA-family) protein [Hydrogenivirga sp. 128-5-R1-1] gi|159882335|gb|EDP75841.1| RNA methyltransferase (TrmA-family) protein [Hydrogenivirga sp. 128-5-R1-1] Length = 425 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 62/211 (29%), Positives = 104/211 (49%), Gaps = 21/211 (9%) Query: 152 IGRANKTKICLDRDY--VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGI 209 +G ++ + L+R + E L V + +R +SF Q N I +E V + K Sbjct: 222 VGDYSRLRTILNRRFWIGKEYLFVEVSSWKFRVSADSFFQVNWTIWKSFIEAV-SDVKSY 280 Query: 210 QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269 + ++L+CG G F++ L+ + + + ++ A YN N +NV V M S + Sbjct: 281 R-KAIDLHCGVGFFTIPLSEKGNFIEGSDSNPSAINDAEYNAKLNGRDNV--VFMRSDAY 337 Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM-VQAYP-HILYISCNPDS 327 R E L + +DPPRSGL+ + + V+ P +I+Y+SCNP + Sbjct: 338 RHLKSRGGEVLDL------------VVLDPPRSGLEKNEMELLVKNKPENIVYVSCNPST 385 Query: 328 LCRDL-SILSTTHTIERLALFDQFPYTRHME 357 L RDL ++L +T+E++ L D FP T H+E Sbjct: 386 LARDLKTLLRNGYTLEKIRLVDMFPQTYHIE 416 >gi|306818800|ref|ZP_07452522.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35239] gi|304648486|gb|EFM45789.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35239] Length = 414 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 63/205 (30%), Positives = 90/205 (43%), Gaps = 16/205 (7%) Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSL 225 V E + V R YR +SF Q + ++ +LA I ++LELY G+G FS+ Sbjct: 219 VREVVRVGAREHTYRIFASSFWQTDYRAPAVLVGELLAGVGDISDFEVLELYSGSGLFSV 278 Query: 226 VLARHFD---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282 LA R+ VE +V++A YN+ V + R S F R Sbjct: 279 FLAEAVGAAGRLTTVEGDALAVKSAGYNLKHAGFVGVSVERASVSA---------RFLRG 329 Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLSILS-TTH 339 D R + DPPRSGL G + + ISC+P S RDL L + Sbjct: 330 VDFGQRVSRGTLVVADPPRSGLGRDVAGAICGLEPDLVALISCDPVSCARDLEALRRGGY 389 Query: 340 TIERLALFDQFPYTRHMECGVLLVR 364 ++ +FD FPYT+H+E +L R Sbjct: 390 RLQSFRVFDLFPYTQHVEVLSVLGR 414 >gi|317127193|ref|YP_004093475.1| RNA methyltransferase, TrmA family [Bacillus cellulosilyticus DSM 2522] gi|315472141|gb|ADU28744.1| RNA methyltransferase, TrmA family [Bacillus cellulosilyticus DSM 2522] Length = 457 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 48/168 (28%), Positives = 80/168 (47%), Gaps = 27/168 (16%) Query: 208 GIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265 G+ G+ +++ YCG G SL LA+ V VEI ++ A+ N N + NV Sbjct: 306 GLSGNETVIDAYCGIGTISLFLAQRAKHVYGVEIVPEAISDAKKNAQLNGIENVDFAVGE 365 Query: 266 SKE-----FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HI 318 +++ + Q +R + I VDPPR G D+ + +V+ P + Sbjct: 366 AEKVMPWWYAQGIRAD-----------------VIVVDPPRKGCDEELLETIVKMKPARV 408 Query: 319 LYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVRK 365 +Y+SCNP +L RDL L + + + D FP+T H+E ++ R+ Sbjct: 409 VYVSCNPATLARDLKYLEGRGYKTKEVQPVDMFPHTMHVETVTVIYRE 456 >gi|206577069|ref|YP_002239492.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Klebsiella pneumoniae 342] gi|206566127|gb|ACI07903.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Klebsiella pneumoniae 342] Length = 375 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 55/187 (29%), Positives = 89/187 (47%), Gaps = 25/187 (13%) Query: 185 NSFTQPNAGINVHML----EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240 SF Q N + + +WV A +Q + +L+CG G F L A R+ +EIA Sbjct: 207 QSFFQTNPAVASRLYATARDWVRALP--VQ-HMWDLFCGVGGFGLHCATPAMRLTGIEIA 263 Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300 ++ AR + A ++N+ + S +F + DI + + V+PP Sbjct: 264 PEAIACARQSAAQLGLSNLHFQALDSTQFAT-----------HEADIP----QLVLVNPP 308 Query: 301 RSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMEC 358 R G+ + A P+I+Y SCN ++ D++ L + +ER+ LFD FP+T H E Sbjct: 309 RRGIGAELCDYLSRMAPPYIIYSSCNARTMATDIARLR-GYRVERVQLFDMFPHTAHYEV 367 Query: 359 GVLLVRK 365 LLVR+ Sbjct: 368 LTLLVRE 374 >gi|56418964|ref|YP_146282.1| RNA methyltransferase [Geobacillus kaustophilus HTA426] gi|56378806|dbj|BAD74714.1| RNA methyltransferase [Geobacillus kaustophilus HTA426] Length = 462 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 56/208 (26%), Positives = 94/208 (45%), Gaps = 21/208 (10%) Query: 155 ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWV--LAATKGIQGD 212 ++T++ +Y+ E L L + +F Q N V + + V AA G + Sbjct: 264 GDETEVLAGDEYIQETLG----DLSFELSARAFFQLNPLQTVKLYDEVKKAAALTGTE-R 318 Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G L LAR V ++ ++E A+ N + N V ++ + Sbjct: 319 IVDAYCGVGTIGLWLARDAKEVRGMDTIPEAIEDAQNNAKKHGFTNTHYVVGKAEYWLPK 378 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330 +E ++ I VDPPR G D A + ++ P ++Y+SCNP SL R Sbjct: 379 WVKE------------GWKPDVIIVDPPRVGCDRALLETILHVRPKTVVYVSCNPSSLAR 426 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMEC 358 DL L+ + I+ + D FP+T H+E Sbjct: 427 DLDALAAQYRIDYIQPVDMFPHTAHVEA 454 >gi|333030806|ref|ZP_08458867.1| RNA methyltransferase, TrmA family [Bacteroides coprosuis DSM 18011] gi|332741403|gb|EGJ71885.1| RNA methyltransferase, TrmA family [Bacteroides coprosuis DSM 18011] Length = 475 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 45/156 (28%), Positives = 77/156 (49%), Gaps = 15/156 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE-FTQ 271 + +LY G G + +++ +V+ +E ++E A+ N NH++N K+ TQ Sbjct: 331 VYDLYTGTGTIANFVSKQAKKVIGIEYVPEAIEDAKINSEINHIDNTLFYAGDMKDILTQ 390 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL-DDATVGMVQAYPH-ILYISCNPDSLC 329 I+ H + I DPPR+G+ D ++ A P I+Y+SCNP + Sbjct: 391 DF-----------INTHG-QPDVIITDPPRAGMHQDVIDVLLFAEPKRIVYVSCNPATQA 438 Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 RDL +L + + + D FP+T H+E VLL ++ Sbjct: 439 RDLQLLDNKYKVAAIQPVDMFPHTHHVENVVLLEKR 474 >gi|322391885|ref|ZP_08065350.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus peroris ATCC 700780] gi|321145365|gb|EFX40761.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus peroris ATCC 700780] Length = 451 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 44/156 (28%), Positives = 76/156 (48%), Gaps = 15/156 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ Y G G L +A+H V VE+ +VE ++ N + N + N V S++ Sbjct: 308 VIDAYSGIGTIGLSVAKHVKDVYGVEVIPEAVENSQKNASINGITNAHYVADSAE----- 362 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330 N + + + I VDPPR GL ++ + V P I Y+SCNP ++ R Sbjct: 363 -------NAMTKWSKNGIKPDVIIVDPPRKGLTESFIKASVAMQPEKITYVSCNPATMAR 415 Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVRK 365 D+ + + ++++ D FP T H+E LLV++ Sbjct: 416 DIKLYQELGYELKKVQPVDLFPQTHHVEAVSLLVKE 451 >gi|298385356|ref|ZP_06994914.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides sp. 1_1_14] gi|298261497|gb|EFI04363.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides sp. 1_1_14] Length = 472 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 53/181 (29%), Positives = 87/181 (48%), Gaps = 16/181 (8%) Query: 186 SFTQPNA--GINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 SF Q N+ N++ + A G + + +LY G G + ++R +V+ +E + Sbjct: 301 SFYQTNSEQAYNLYKIAREFAGLTGKEL-VYDLYTGTGTIANFVSRQARQVIGIEYVPEA 359 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 +E A+ N N + N K+ +EF I+ H R I DPPR+G Sbjct: 360 IEDAKVNAKINEIKNALFYAGDMKDMLT-----QEF-----INQHG-RPDVIITDPPRAG 408 Query: 304 LDDATVGMVQ-AYPH-ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVL 361 + V ++ A P I+Y+SCNP + RDL +L + ++ + D FP+T H+E VL Sbjct: 409 MHQDVVDVILFAEPKRIVYVSCNPATQARDLQLLDGKYKVKAVQPVDMFPHTHHVENVVL 468 Query: 362 L 362 L Sbjct: 469 L 469 >gi|302345320|ref|YP_003813673.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella melaninogenica ATCC 25845] gi|302149971|gb|ADK96233.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella melaninogenica ATCC 25845] Length = 474 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 51/184 (27%), Positives = 84/184 (45%), Gaps = 16/184 (8%) Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDLL--ELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 SF Q N H+ V + G+ L +LY G G + +A+ +V+ +E + Sbjct: 303 SFYQTNTEQAYHLYS-VAREFANLTGNELVYDLYTGTGTIANFVAKKAQKVIGIEYVPEA 361 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 +E A+ N N ++N K+ +D R I DPPR+G Sbjct: 362 IEDAKVNSEVNKIDNTLFYAGDMKDILT-----------EDFISEHGRPDVIITDPPRAG 410 Query: 304 LDDATVGMV-QAYPH-ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVL 361 + V ++ A P I+Y+SCNP + RDL++L + + + D FP+T H+E VL Sbjct: 411 MHPDVVNVILGASPKRIVYVSCNPATQARDLALLDADYKVSAVQPVDMFPHTPHVENVVL 470 Query: 362 LVRK 365 L ++ Sbjct: 471 LEKR 474 >gi|305666421|ref|YP_003862708.1| putative RNA methyltransferase [Maribacter sp. HTCC2170] gi|88708684|gb|EAR00919.1| putative RNA methyltransferase [Maribacter sp. HTCC2170] Length = 469 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 59/214 (27%), Positives = 94/214 (43%), Gaps = 24/214 (11%) Query: 163 DRDYVDERLTVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGDLL 214 D Y E + AGR I ++E SF Q N+ + L V GI G+ L Sbjct: 267 DTIYDQEIVCFAGRDHIIEEMEGLQFKINAKSFYQTNSE-QAYELYKVARDFAGITGNEL 325 Query: 215 --ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +LY G G + +++ +V+ +E ++E A+ N A N ++NV K Sbjct: 326 VYDLYTGTGTIAQFVSKKAKKVIGIESVPEAIEDAKANAANNKIDNVDFFVGDMKN---- 381 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCR 330 + E N DI I DPPR G+ V + ++Y+SCN + R Sbjct: 382 VFNEDFINAHGSPDI-------IITDPPRDGMHKDVVQQLLNIGAKKVVYVSCNSATQAR 434 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 DL+++ + + ++ D FP T H+E VLL + Sbjct: 435 DLALMKHMYKVSKVQAVDMFPQTHHVENVVLLEK 468 >gi|260912576|ref|ZP_05919108.1| TrmA family RNA methyltransferase [Prevotella sp. oral taxon 472 str. F0295] gi|260633341|gb|EEX51499.1| TrmA family RNA methyltransferase [Prevotella sp. oral taxon 472 str. F0295] Length = 502 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 55/187 (29%), Positives = 86/187 (45%), Gaps = 22/187 (11%) Query: 186 SFTQPNAGINVHMLEWV--LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 SF Q N H+ + A+ G + + +LY G G + +AR +V+ VE + Sbjct: 330 SFYQTNTQQAYHLYDVARRFASLSGTE-TVYDLYTGTGTIANFVARQAKKVVGVEYVPEA 388 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF---NRLKDIDIHSYRFKTIFVDPP 300 +E A+ N N ++N K+ EF N D+ I DPP Sbjct: 389 IEDAKVNSELNGISNTTFYAGDMKDILN-----DEFIANNGQPDV---------IITDPP 434 Query: 301 RSGLD-DATVGMVQAYPH-ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMEC 358 R+G+ D +++A P I+Y+SCNP + RDL L + + + D FP+T H+E Sbjct: 435 RAGMHADVIETIIRANPQRIVYVSCNPATQARDLIALDERYAVTAVQPVDMFPHTPHVEN 494 Query: 359 GVLLVRK 365 VLL R+ Sbjct: 495 VVLLERR 501 >gi|260174511|ref|ZP_05760923.1| RNA methyltransferase [Bacteroides sp. D2] Length = 456 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 58/201 (28%), Positives = 93/201 (46%), Gaps = 26/201 (12%) Query: 175 GRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGDLL--ELYCGNGNFS 224 G+ I+ ++E SF Q N+ + L V G+ G+ L +LY G G + Sbjct: 266 GKDHIFEEMEGLRFKVGPKSFYQTNSE-QAYNLYKVAREFAGLTGNELVYDLYTGTGTIA 324 Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE-FTQAMRREREFNRLK 283 ++R +V+ +E ++E A+ N N + N K+ TQ Sbjct: 325 NFVSRQARQVIGIEYVPEAIEDAKINAEINDIKNALFYAGDMKDILTQDF---------- 374 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQ-AYPH-ILYISCNPDSLCRDLSILSTTHTI 341 I+ H R I DPPR+G+ V ++ A P I+Y+SCNP + RDL +L + + Sbjct: 375 -INQHG-RPDVIITDPPRAGMHQDVVDVILFAEPKRIVYVSCNPATQARDLQLLDEKYKV 432 Query: 342 ERLALFDQFPYTRHMECGVLL 362 + + D FP+T H+E VLL Sbjct: 433 KAIQPVDMFPHTHHVENVVLL 453 >gi|253579594|ref|ZP_04856863.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251849095|gb|EES77056.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 545 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 79/161 (49%), Gaps = 15/161 (9%) Query: 210 QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269 Q + +LYCG G SL LA+ V VEI ++E A+ N N + N + ++E Sbjct: 306 QETVWDLYCGIGTISLFLAQKAKFVRGVEIVPAAIENAKENAKLNGLENTEFFVGKAEEV 365 Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDS 327 RE+ + + I VDPPR G D+ + MV+ P I+Y+SC+ + Sbjct: 366 LP-----REYKK------NGVYADVIVVDPPRKGCDETLLETMVEMNPDRIVYVSCDSAT 414 Query: 328 LCRDLSILST-THTIERLALFDQFPYTRHMECGVLLV-RKP 366 L RDL L + + ++ DQF T H+E VLL +KP Sbjct: 415 LARDLKYLCERGYELRKVCPVDQFGMTVHVETVVLLSQQKP 455 >gi|253568537|ref|ZP_04845948.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|251842610|gb|EES70690.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] Length = 472 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 53/181 (29%), Positives = 87/181 (48%), Gaps = 16/181 (8%) Query: 186 SFTQPNA--GINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 SF Q N+ N++ + A G + + +LY G G + ++R +V+ +E + Sbjct: 301 SFYQTNSEQAYNLYKIAREFAGLTGKEL-VYDLYTGTGTIANFVSRQARQVIGIEYVPEA 359 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 +E A+ N N + N K+ +EF I+ H R I DPPR+G Sbjct: 360 IEDAKVNAEINEIKNALFYAGDMKDMLT-----QEF-----INQHG-RPDVIITDPPRAG 408 Query: 304 LDDATVGMVQ-AYPH-ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVL 361 + V ++ A P I+Y+SCNP + RDL +L + ++ + D FP+T H+E VL Sbjct: 409 MHQDVVDVILFAEPKRIVYVSCNPATQARDLQLLDGKYKVKAVQPVDMFPHTHHVENVVL 468 Query: 362 L 362 L Sbjct: 469 L 469 >gi|228473017|ref|ZP_04057774.1| 23S rRNA-methyltransferase [Capnocytophaga gingivalis ATCC 33624] gi|228275599|gb|EEK14376.1| 23S rRNA-methyltransferase [Capnocytophaga gingivalis ATCC 33624] Length = 469 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 61/217 (28%), Positives = 93/217 (42%), Gaps = 28/217 (12%) Query: 163 DRDYVDERLTVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGDLL 214 D Y E + GR IY ++E SF Q N+ + L V+ + G+ L Sbjct: 267 DTIYDQEVICYHGRNFIYEEMEGLRFKINAKSFFQTNS-TQAYELYKVVRDFAALTGEEL 325 Query: 215 --ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +LY G G + +A+ +V+ VE ++ A+ N N ++NV F Sbjct: 326 VYDLYTGTGTIAQFVAKKAKKVIGVEAVPEAIADAKENAQNNQISNVDF-------FVGD 378 Query: 273 MRR--EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSL 328 M+ EF I H I DPPR G+ V + A ++Y+SCN + Sbjct: 379 MKNVFNEEF-----ITTHGLP-DVIITDPPRDGMHKDVVAQILRIAPKRVVYVSCNSATQ 432 Query: 329 CRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 RDL++L + + R+ D FP T H+E LL K Sbjct: 433 ARDLALLQEKYKVVRICPVDMFPQTYHIENIALLEAK 469 >gi|329726919|gb|EGG63377.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus epidermidis VCU144] Length = 456 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 45/159 (28%), Positives = 71/159 (44%), Gaps = 22/159 (13%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +L+ YCG G L +A V VE+ +++ A N N + N Sbjct: 311 VLDTYCGIGTIGLYMAPLAKHVYGVEVVPQAIKDAEDNATKNQLKNTTF----------- 359 Query: 273 MRREREFNRLKDIDI----HSYRFKTIFVDPPRSGLDDA-TVGMVQAYPH-ILYISCNPD 326 E+ + +D+ + + + VDPPR G D+ +++ P I+YISCNP Sbjct: 360 -----EYGKAEDVILTWKSQGIKPDVVMVDPPRKGCDETFLTTLLKLNPKRIVYISCNPS 414 Query: 327 SLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 + RD IL+ + + + D FP T H+E L VRK Sbjct: 415 TQQRDAQILAEQYELVEITPVDMFPQTTHIETVALFVRK 453 >gi|163750002|ref|ZP_02157246.1| RNA methyltransferase, TrmA family protein [Shewanella benthica KT99] gi|161330276|gb|EDQ01257.1| RNA methyltransferase, TrmA family protein [Shewanella benthica KT99] Length = 462 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 67/238 (28%), Positives = 109/238 (45%), Gaps = 40/238 (16%) Query: 144 ARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIEN---------SFTQPNAGI 194 A + + LI + N + L D + L + L Y +++N SF Q NA I Sbjct: 243 ALSHGVSLIVQGNDADLTLICD-TPKMLDLDSDELPYYELDNGVKLSFTPGSFVQVNAEI 301 Query: 195 NVHML----EWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248 N M+ +W+ ++ + +L+L+CG GNFSL LA V+ VE V+ AR Sbjct: 302 NNAMVNQAVDWL-----SVEANERVLDLFCGVGNFSLPLANKGAEVIGVEGVPEMVQQAR 356 Query: 249 YNIAANHVNNVKI--VRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306 N + ++ V +S+ TQ+ L +D + +DP R+G + Sbjct: 357 MNATLSGLDKVSFFHTDLSADLSTQSW--------LGKVD-------KLLLDPARAGAFE 401 Query: 307 ATVGMVQAYPH-ILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVLL 362 + + + P I+Y+SC+P SL RD +L + + +L L D FP T H+E L Sbjct: 402 SLQWLKKMKPKSIVYVSCDPASLARDSECLLKHGYKLTKLGLIDMFPQTHHIEAMALF 459 >gi|19310570|gb|AAL85018.1| unknown protein [Arabidopsis thaliana] Length = 564 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 58/214 (27%), Positives = 88/214 (41%), Gaps = 32/214 (14%) Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD----LLELYCGNG 221 Y + +T R L ++ NSF Q N +L ++ + G++GD +L+L+CG G Sbjct: 363 YGKDTITEVLRGLTFQISANSFFQTNTH-QAEVLYKLIEESAGLKGDGSEVVLDLFCGTG 421 Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281 L LAR V E+ ++ A N N + N ++ + + N Sbjct: 422 TIGLTLARRAKHVYGYEVVPQAITDAHKNAQINGIENATFIQGDLNKIGEDFG-----NN 476 Query: 282 LKDIDIHSYRFKTIFVDPPRSG--LDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTH 339 DI + DP R G + + P I+Y+SCNP + RDL L H Sbjct: 477 FPKPDI-------VISDPNRPGMHMKLIKFLLKLKSPRIIYVSCNPATCARDLDYL--CH 527 Query: 340 TIERLAL-----------FDQFPYTRHMECGVLL 362 +E L D FP+T H+EC LL Sbjct: 528 GVEEKNLKGCYKLMSVQPVDMFPHTPHIECVCLL 561 >gi|315660149|ref|ZP_07913006.1| 23S rRNA (uracil-5-)-methyltransferase [Staphylococcus lugdunensis M23590] gi|315494830|gb|EFU83168.1| 23S rRNA (uracil-5-)-methyltransferase [Staphylococcus lugdunensis M23590] Length = 456 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 44/155 (28%), Positives = 73/155 (47%), Gaps = 14/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +L+ YCG G L +A V VE+ +++ AR N N ++N V +++ Sbjct: 311 VLDTYCGIGTIGLYIAPVAKHVYGVEVVPSAIKDARQNALVNDLHNTTFVCGKAEDVIMD 370 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330 +RE + + VDPPR G + + ++ P I+YISCNP + R Sbjct: 371 WQRE------------GIQPDVVMVDPPRKGCEAQFIQTLLDLNPERIVYISCNPSTQQR 418 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 D +L+T + ++ + D FP T H+E L +K Sbjct: 419 DAHMLATQYDLKEITPVDMFPQTTHIETVALFKKK 453 >gi|304310588|ref|YP_003810186.1| 23S rRNA (Uracil-5-)-methyltransferase [gamma proteobacterium HdN1] gi|301796321|emb|CBL44529.1| 23S rRNA (Uracil-5-)-methyltransferase [gamma proteobacterium HdN1] Length = 444 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 56/177 (31%), Positives = 86/177 (48%), Gaps = 21/177 (11%) Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 FTQ N IN M+ + + +L+L+CG GNF+L LAR D V+ VE + V+ Sbjct: 274 FTQVNPYINEKMVSRAVELLAPEPSERVLDLFCGLGNFTLPLARRADVVVGVEGSDALVQ 333 Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDPPRS 302 R N N + NV EF A + K ++ ++ F I +DPPRS Sbjct: 334 RGRENALHNGLQNV--------EFYGA-------DLTKPLEHQAWAHDGFAKILIDPPRS 378 Query: 303 GLDDATVGMVQAYPH-ILYISCNPDSLCRDLSILS-TTHTIERLALFDQFPYTRHME 357 G + + P I+Y+SC+P +L RD + L+ + + + D FP+T H+E Sbjct: 379 GALELVQKITVFKPKRIVYVSCDPATLARDAAELARQGYRLVVAGVMDMFPHTTHVE 435 >gi|188995054|ref|YP_001929306.1| RNA methyltransferase [Porphyromonas gingivalis ATCC 33277] gi|188594734|dbj|BAG33709.1| RNA methyltransferase [Porphyromonas gingivalis ATCC 33277] Length = 478 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 59/207 (28%), Positives = 96/207 (46%), Gaps = 22/207 (10%) Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL--ELYCGNG 221 R+Y++E + L ++ SF Q N+ + L + G+ GD L +LY G G Sbjct: 285 REYIEEEM----EGLKFKIGAKSFYQTNSR-QAYQLYRIAREFAGLTGDELVYDLYTGTG 339 Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281 + +A RV+ +E ++E AR N N + N K+ +F Sbjct: 340 TIANFVAGQAHRVIGIEYVPEAIEDARTNSLLNGIENTLFYAGDMKDILT-----NDF-- 392 Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL--ST 337 I+ H R + DPPR+G+ ++ + + A I+Y+SCNP + RDL++L Sbjct: 393 ---IEQHG-RPDVVITDPPRAGMHESVIDAILFAAPKRIVYVSCNPATQARDLALLMADG 448 Query: 338 THTIERLALFDQFPYTRHMECGVLLVR 364 + + D FP+T H+E VLLVR Sbjct: 449 RYRAVKSRPVDMFPHTHHVENVVLLVR 475 >gi|161486689|ref|NP_936285.2| 23S rRNA methyluridine methyltransferase [Vibrio vulnificus YJ016] gi|50401484|sp|Q7MFU0|RUMB_VIBVY RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName: Full=23S rRNA(M-5-U747)-methyltransferase Length = 376 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 60/209 (28%), Positives = 104/209 (49%), Gaps = 29/209 (13%) Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML----EWVLAATKGIQGDLLELYC 218 D Y+ E G ++ R SF Q N + + +WV A K Q + +L+C Sbjct: 191 DAHYLLEEFN--GVPMVVR--PKSFFQTNPHVAAQLYATARDWV-AELKPRQ--MWDLFC 243 Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278 G G F+L A H ++V+ +EI + ++ +A+ + + N++ + S ++QA + + Sbjct: 244 GVGGFALHCAPHAEQVIGIEIEEEAINSAKLSAQQLGIGNLRFSALDSAAYSQAQTQAAD 303 Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILS 336 I V+PPR GL A ++ A +++Y SCNP ++ +DL+ L Sbjct: 304 L---------------ILVNPPRRGLGQALSEQLEQLAPQYLIYSSCNPVTMQQDLAHLP 348 Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVRK 365 ++ +ER FD FP+T H E +LLVR+ Sbjct: 349 -SYQVERAQWFDMFPHTDHAEVMMLLVRQ 376 >gi|42565079|ref|NP_188767.2| RNA methyltransferase family protein [Arabidopsis thaliana] gi|9280234|dbj|BAB01724.1| RNA methyltransferase-like protein [Arabidopsis thaliana] gi|332642969|gb|AEE76490.1| RNA methyltransferase family protein [Arabidopsis thaliana] Length = 554 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 58/214 (27%), Positives = 88/214 (41%), Gaps = 32/214 (14%) Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD----LLELYCGNG 221 Y + +T R L ++ NSF Q N +L ++ + G++GD +L+L+CG G Sbjct: 353 YGKDTITEVLRGLTFQISANSFFQTNTH-QAEVLYKLIEESAGLKGDGSEVVLDLFCGTG 411 Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281 L LAR V E+ ++ A N N + N ++ + + N Sbjct: 412 TIGLTLARRAKHVYGYEVVPQAITDAHKNAQINGIENATFIQGDLNKIGEDFG-----NN 466 Query: 282 LKDIDIHSYRFKTIFVDPPRSG--LDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTH 339 DI + DP R G + + P I+Y+SCNP + RDL L H Sbjct: 467 FPKPDI-------VISDPNRPGMHMKLIKFLLKLKSPRIIYVSCNPATCARDLDYL--CH 517 Query: 340 TIERLAL-----------FDQFPYTRHMECGVLL 362 +E L D FP+T H+EC LL Sbjct: 518 GVEEKNLKGCYKLMSVQPVDMFPHTPHIECVCLL 551 >gi|332359419|gb|EGJ37239.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis SK355] Length = 469 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 49/157 (31%), Positives = 76/157 (48%), Gaps = 19/157 (12%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ Y G G L +A+H +V +E+ +VE +R N N + N V ++E Q Sbjct: 321 VIDAYSGIGTIGLSVAKHVKQVYGMEVIPEAVENSRKNAEINGIANASYVCAPAEEAIQ- 379 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD----ATVGMVQAYPHILYISCNPDSL 328 N LK+ + I VDPPR GL + A+V M P I YISCN ++ Sbjct: 380 -------NWLKE----GIQADVILVDPPRKGLTESFIKASVSM--EPPKITYISCNVATM 426 Query: 329 CRDLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364 RD+ + + ++++ D FP T H+E LVR Sbjct: 427 ARDIKLYQELGYELKKVQPVDLFPQTHHVEAVSQLVR 463 >gi|237653665|ref|YP_002889979.1| 23S rRNA 5-methyluridine methyltransferase [Thauera sp. MZ1T] gi|237624912|gb|ACR01602.1| RNA methyltransferase, TrmA family [Thauera sp. MZ1T] Length = 441 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 58/190 (30%), Positives = 88/190 (46%), Gaps = 24/190 (12%) Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 FTQ NA IN ++ + G+ + +L+CG GNFSL +AR V+ VE ++ VE Sbjct: 261 FTQVNADINRLLIRRSMQLLDPRPGERIADLFCGLGNFSLPIARLGAEVVGVEGSEALVE 320 Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD 305 A N A N + + EF A E + L + R + +DPPR G Sbjct: 321 RAHANAARNGL-------AARCEFHAANLFETTEDSLAALG----RLDKLLIDPPREG-- 367 Query: 306 DATVGMVQAY------PHILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTRHME 357 + +V+A I+Y+SCNP +L RD ++L + + + + FP T H+E Sbjct: 368 --AIAVVKAIDPSRGPSRIVYVSCNPATLARDAAVLVHEKGYRLAAAGIANMFPQTSHVE 425 Query: 358 CGVLLVRKPS 367 L R P Sbjct: 426 SVALFERTPG 435 >gi|225568809|ref|ZP_03777834.1| hypothetical protein CLOHYLEM_04888 [Clostridium hylemonae DSM 15053] gi|225162308|gb|EEG74927.1| hypothetical protein CLOHYLEM_04888 [Clostridium hylemonae DSM 15053] Length = 460 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 47/156 (30%), Positives = 74/156 (47%), Gaps = 18/156 (11%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + +LY G G + +LA RV+ VEI + +V AA+ N N ++N Sbjct: 317 IFDLYSGTGTIAQILAPVAKRVVGVEIVEEAVAAAKENAKLNGLDNCTFWS------GDV 370 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330 ++ E + D+ I +DPPR G+ + + + ++YI+C P SL R Sbjct: 371 LKVIDELGEVPDL---------IVIDPPRDGVHPKALEKITNFGVERMVYIACKPTSLAR 421 Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVRK 365 DL +L + +ER+ D FP T H+E VLL K Sbjct: 422 DLEMLQGRGYEVERMGCVDLFPGTVHVETVVLLSHK 457 >gi|301109485|ref|XP_002903823.1| tRNA (uracil-5-)-methyltransferase [Phytophthora infestans T30-4] gi|262096826|gb|EEY54878.1| tRNA (uracil-5-)-methyltransferase [Phytophthora infestans T30-4] Length = 815 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 48/158 (30%), Positives = 80/158 (50%), Gaps = 18/158 (11%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L ++ CG G + + +V+ +EI KP+ + A+ N N+V NV V +++ ++ Sbjct: 653 LYDVCCGTGTIGICASEGVGKVVGIEICKPATDDAQVNAILNNVQNVSFVNSKAEDVMKS 712 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP---HILYISCNP-DSL 328 + +++ K H R I VDPPR+GL + ++A P I+Y+SCNP +SL Sbjct: 713 LLQKKRDESEK----HLNRVVAI-VDPPRAGLHHNVLRALRACPPVERIVYVSCNPTNSL 767 Query: 329 CRDLSIL--STTHTIERLAL-------FDQFPYTRHME 357 RD L +T +++ A D FP+T H E Sbjct: 768 VRDAVTLCGPSTKSLQGQAFEPVHAVPVDMFPHTPHCE 805 >gi|254829496|ref|ZP_05234183.1| RNA methyltransferase [Listeria monocytogenes FSL N3-165] gi|258601911|gb|EEW15236.1| RNA methyltransferase [Listeria monocytogenes FSL N3-165] Length = 453 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 43/153 (28%), Positives = 75/153 (49%), Gaps = 15/153 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G+ SL LA+ V VEI +++ AR N N + N ++E + Sbjct: 310 VIDAYCGIGSISLCLAKKAKHVYGVEIVDQAIQDARANAELNELANTTFETGKAEEVIPS 369 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330 + + D+ + VDPPR G D+ + + A ++Y+SCNP +L R Sbjct: 370 WYKA---GIVADV---------LVVDPPRKGCDEKLLETILAMKPKKVVYVSCNPGTLAR 417 Query: 331 DLSILS-TTHTIERLALFDQFPYTRHMECGVLL 362 D+ +L+ + +++ D FP T H+E +L Sbjct: 418 DMKLLTDGGYVAKKVQPVDMFPMTTHIEAVTVL 450 >gi|126274016|ref|XP_001387373.1| tRNA(m5U54)methyltransferase [Scheffersomyces stipitis CBS 6054] gi|126213243|gb|EAZ63350.1| tRNA(m5U54)methyltransferase [Pichia stipitis CBS 6054] Length = 560 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 64/223 (28%), Positives = 101/223 (45%), Gaps = 31/223 (13%) Query: 157 KTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWV---LAATKGIQGD- 212 KT + R V E V G T + E F Q N I + +V LA +G+ Sbjct: 354 KTCVTKSRQIVTEY--VNGYTFEFSAGE--FFQNNNSILPAVTNYVKSNLAIPNSKEGEP 409 Query: 213 --LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270 L++ YCG+G FS+ + + +V+ VE++ SV+ A N N++ N + +++ Sbjct: 410 NYLVDAYCGSGLFSITCSDNVSKVIGVEVSADSVKFAERNAKNNNIENALFLVGKAEQI- 468 Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSL 328 ID S R ++ +DPPR G D+ + + Y I+YISCN S Sbjct: 469 -----------FGSIDTPSNR-TSVILDPPRKGCDEVFLNQLSDYHPAKIVYISCNVHSQ 516 Query: 329 CRDLS-ILSTTHT-----IERLALFDQFPYTRHMECGVLLVRK 365 RD+ ++ T +E + FD FP T H+E +L K Sbjct: 517 ARDVEWFINNTENGKDYYVESIKGFDFFPQTHHVESVAVLALK 559 >gi|319646952|ref|ZP_08001180.1| YfjO protein [Bacillus sp. BT1B_CT2] gi|317391011|gb|EFV71810.1| YfjO protein [Bacillus sp. BT1B_CT2] Length = 463 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 48/181 (26%), Positives = 85/181 (46%), Gaps = 17/181 (9%) Query: 186 SFTQPNAGINVHMLEWVLAATKGIQG--DLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 +F Q N V + + V A K + G +++ YCG G + +A + +++ K S Sbjct: 293 AFFQLNPIQTVKLYDEVKKAAK-LTGREKVVDAYCGVGTIGMWIADGAKEIRGMDVIKES 351 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 ++ A N + + N + V +++ + +E +R + VDPPR+G Sbjct: 352 IDDANQNAKKHGIENARYVTGTAEHWLPKWTKE------------GFRPDVVIVDPPRTG 399 Query: 304 LDDATVGMV-QAYPH-ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVL 361 D + + Q P +Y+SCNP +L +DL L+ + +E + D FP T H+E V Sbjct: 400 CDRTFLDTIRQVKPKRFVYVSCNPSTLAKDLQYLAKDYHVEYIQPVDMFPQTAHVESVVS 459 Query: 362 L 362 L Sbjct: 460 L 460 >gi|110803163|ref|YP_697677.1| RNA methyltransferase [Clostridium perfringens SM101] gi|110683664|gb|ABG87034.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium perfringens SM101] Length = 455 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 46/158 (29%), Positives = 74/158 (46%), Gaps = 17/158 (10%) Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271 ++ + YCG G +L L++ +V VEI +++ A N N V NV+ S+ Sbjct: 311 EVFDAYCGTGTITLFLSQKAKKVYGVEIIPQAIDNAWINAKENKVENVEFFVGESEVV-- 368 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLC 329 + D+ + + VDPPR G D + + I+Y+SC+P +L Sbjct: 369 ----------IPDLINKGVKADVVVVDPPRKGCDKKLLDAITNIDAKKIVYVSCDPSTLG 418 Query: 330 RDLSILSTT--HTIERLALFDQFPYTRHMECGVLLVRK 365 RDL +L T+E + D FP T H+E LL++K Sbjct: 419 RDLKVLEENGYKTLE-VQPVDMFPNTAHIENVALLIKK 455 >gi|18309349|ref|NP_561283.1| RNA methyltransferase [Clostridium perfringens str. 13] gi|50401631|sp|Q8XNG6|Y367_CLOPE RecName: Full=Uncharacterized RNA methyltransferase CPE0367 gi|18144025|dbj|BAB80073.1| RNA methyltransferase [Clostridium perfringens str. 13] Length = 455 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 46/158 (29%), Positives = 74/158 (46%), Gaps = 17/158 (10%) Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271 ++ + YCG G +L L++ +V VEI +++ A N N V NV+ S+ Sbjct: 311 EVFDAYCGTGTITLFLSQKAKKVYGVEIIPQAIDNAWINAKENKVENVEFFVGESEVV-- 368 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLC 329 + D+ + + VDPPR G D + + I+Y+SC+P +L Sbjct: 369 ----------IPDLINKGVKADVVVVDPPRKGCDKKLLDAITNIDAKKIVYVSCDPSTLG 418 Query: 330 RDLSILSTT--HTIERLALFDQFPYTRHMECGVLLVRK 365 RDL +L T+E + D FP T H+E LL++K Sbjct: 419 RDLKVLEENGYKTLE-VQPVDMFPNTAHIENVALLIKK 455 >gi|166366309|ref|YP_001658582.1| RNA methyltransferase [Microcystis aeruginosa NIES-843] gi|166088682|dbj|BAG03390.1| probable RNA methyltransferase [Microcystis aeruginosa NIES-843] Length = 455 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 61/217 (28%), Positives = 99/217 (45%), Gaps = 26/217 (11%) Query: 157 KTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LL 214 +T RDY+ E+ AG L Y+ ++F Q N L V+ ++G+ L+ Sbjct: 255 QTTTIAGRDYITEKF--AG--LTYQLAADTFFQVNTEA-AEALFAVICQKLDLKGEEILI 309 Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274 + YCG G F+L LA+ V+ +E S++ A+ N N++ N + + Sbjct: 310 DAYCGIGTFTLPLAKRVKEVIGLESYSFSLDRAKINAQLNNITNTTFILGAV-------- 361 Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDL 332 E+ +L + + I +DPPR G D + + + I+YISC +L RDL Sbjct: 362 -EKTLPQL------TVKPDIILLDPPRKGCDRSVLDSLLRLQSQRIVYISCQSATLARDL 414 Query: 333 SILSTTHTIERLAL--FDQFPYTRHMECGVLLVRKPS 367 L T + L + D FP T H+EC L +K + Sbjct: 415 QYLCKTGDYQLLEVQTADFFPQTPHVECAAFLRQKTA 451 >gi|194476527|ref|YP_002048706.1| 23S rRNA methyltransferase/RumA [Paulinella chromatophora] gi|171191534|gb|ACB42496.1| 23S rRNA methyltransferase/RumA [Paulinella chromatophora] Length = 448 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 62/215 (28%), Positives = 94/215 (43%), Gaps = 28/215 (13%) Query: 155 ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPN---AGINVHMLEWVLAATKGIQG 211 + TK R ++ ER L R ++F Q N A V+ L +L + G + Sbjct: 252 GSSTKTIAGRPWLIERFC----NLNLRIASDTFFQINTLQAERAVNFLASILNVSTGPK- 306 Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271 +L+ Y G G SL LA VL +E+ SV AR N N + + + + E Sbjct: 307 -ILDAYSGVGTLSLPLAAAGANVLGLELRYSSVIHARLNAKLNSITSARFEHVDVAE--- 362 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLC 329 + +H + VDPPR GL+ + + A P +Y+SCNP +L Sbjct: 363 ------------ALALHLPSSDALIVDPPRKGLELEVIKQIIANPADQTVYLSCNPSTLA 410 Query: 330 RDLSILSTTHTIERLAL--FDQFPYTRHMECGVLL 362 RDL +L+ I+ + D FP T H+EC +L Sbjct: 411 RDLRLLTLAGNIKVTFIQPIDFFPKTTHVECLTIL 445 >gi|90962313|ref|YP_536229.1| tRNA (Uracil-5-) -methyltransferase [Lactobacillus salivarius UCC118] gi|90821507|gb|ABE00146.1| tRNA (Uracil-5-) -methyltransferase [Lactobacillus salivarius UCC118] Length = 459 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 45/159 (28%), Positives = 79/159 (49%), Gaps = 22/159 (13%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G SL +A+ +V VEI ++E A++N + N ++N+ ++ + + Sbjct: 312 VIDAYCGIGTISLNMAKFAKKVYGVEIVPEAIEDAKHNASLNDLDNLDFEVGEAEVWMEK 371 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCR 330 +++ + I VDPPR GL + + V P ++Y+SCNP +L R Sbjct: 372 WQKQ------------GIKPDVIMVDPPRKGLTSSLIQSAVAMEPKKVVYVSCNPATLVR 419 Query: 331 DLSIL-----STTHTIERLALFDQFPYTRHMECGVLLVR 364 D+ T +I+ + DQFP T H+E +L R Sbjct: 420 DIQEFMELGYQVTKSIQPV---DQFPQTTHVESVTVLER 455 >gi|29346053|ref|NP_809556.1| RNA methyltransferase [Bacteroides thetaiotaomicron VPI-5482] gi|50401554|sp|Q8AA22|Y643_BACTN RecName: Full=Uncharacterized RNA methyltransferase BT_0643 gi|29337947|gb|AAO75750.1| RNA methyltransferase [Bacteroides thetaiotaomicron VPI-5482] Length = 454 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 53/181 (29%), Positives = 87/181 (48%), Gaps = 16/181 (8%) Query: 186 SFTQPNA--GINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 SF Q N+ N++ + A G + + +LY G G + ++R +V+ +E + Sbjct: 283 SFYQTNSEQAYNLYKIAREFAGLTGKEL-VYDLYTGTGTIANFVSRQARQVIGIEYVPEA 341 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 +E A+ N N + N K+ +EF I+ H R I DPPR+G Sbjct: 342 IEDAKVNAEINEIKNALFYAGDMKDMLT-----QEF-----INQHG-RPDVIITDPPRAG 390 Query: 304 LDDATVGMVQ-AYPH-ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVL 361 + V ++ A P I+Y+SCNP + RDL +L + ++ + D FP+T H+E VL Sbjct: 391 MHQDVVDVILFAEPKRIVYVSCNPATQARDLQLLDGKYKVKAVQPVDMFPHTHHVENVVL 450 Query: 362 L 362 L Sbjct: 451 L 451 >gi|298529142|ref|ZP_07016545.1| (Uracil-5)-methyltransferase [Desulfonatronospira thiodismutans ASO3-1] gi|298510578|gb|EFI34481.1| (Uracil-5)-methyltransferase [Desulfonatronospira thiodismutans ASO3-1] Length = 386 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 53/176 (30%), Positives = 84/176 (47%), Gaps = 16/176 (9%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 SF Q N +N ++++VL+ + L +LY G GNF+L A +VLA+E + Sbjct: 216 GSFFQANWRLNQDLVQYVLSRLAHLD-SLADLYAGAGNFALPCAAGGHKVLALESDSRAA 274 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 + A +NN++I T +RR LK + + + +DPPRSG Sbjct: 275 KGALRAAREGGLNNLRI-------HTGDLRRREAMQTLK-----KFAPQGLILDPPRSGA 322 Query: 305 DD--ATVGMVQAYPHILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHME 357 ++ +++ + +ISC+ + CRDL L I A+FD FP T HME Sbjct: 323 GRNLQSLAGLESLQRLAWISCDVVNTCRDLKPFLEAGWRIREAAMFDMFPQTWHME 378 >gi|168212723|ref|ZP_02638348.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium perfringens CPE str. F4969] gi|170715672|gb|EDT27854.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium perfringens CPE str. F4969] Length = 455 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 46/158 (29%), Positives = 74/158 (46%), Gaps = 17/158 (10%) Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271 ++ + YCG G +L L++ +V VEI +++ A N N V NV+ S+ Sbjct: 311 EVFDAYCGTGTITLFLSQKAKKVYGVEIIPQAIDNAWINAKENKVENVEFFVGESEVV-- 368 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLC 329 + D+ + + VDPPR G D + + I+Y+SC+P +L Sbjct: 369 ----------IPDLINKGVKADVVVVDPPRKGCDKKLLDAITNIDAKKIVYVSCDPSTLG 418 Query: 330 RDLSILSTT--HTIERLALFDQFPYTRHMECGVLLVRK 365 RDL +L T+E + D FP T H+E LL++K Sbjct: 419 RDLKVLEENGYKTLE-VQPVDMFPNTAHIENVALLIKK 455 >gi|238854930|ref|ZP_04645260.1| 23S rRNA-methyltransferase RumA [Lactobacillus jensenii 269-3] gi|260664217|ref|ZP_05865070.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus jensenii SJ-7A-US] gi|282931642|ref|ZP_06337135.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus jensenii 208-1] gi|238832720|gb|EEQ25027.1| 23S rRNA-methyltransferase RumA [Lactobacillus jensenii 269-3] gi|260562103|gb|EEX28072.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus jensenii SJ-7A-US] gi|281304253|gb|EFA96362.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus jensenii 208-1] Length = 458 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 45/153 (29%), Positives = 75/153 (49%), Gaps = 14/153 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L++ Y G G L+ + + +V+ +E +VE A +N+ NHV N + ++ S ++ Sbjct: 313 LIDAYSGVGTIGLIASDYVKQVIGIESIPEAVEDAMHNVKLNHVRNAEYLQGSVEKILPQ 372 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYPH-ILYISCNPDSLCR 330 ++ N ID + VDPPR+GL + + + Q P +YISCNP +L + Sbjct: 373 LK-----NSGVPID-------ALIVDPPRTGLAKSLIKTIMQVKPESFVYISCNPSTLAQ 420 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363 DL +LS + + + D P T E LV Sbjct: 421 DLVMLSEVYDVRVIENVDMLPQTARCEAIAKLV 453 >gi|306829492|ref|ZP_07462682.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus mitis ATCC 6249] gi|304428578|gb|EFM31668.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus mitis ATCC 6249] Length = 452 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 44/156 (28%), Positives = 76/156 (48%), Gaps = 15/156 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ Y G G L +A+H V VE+ +VE ++ N A N++ N V +++ Sbjct: 308 VIDAYSGIGTIGLSVAKHVKEVYGVEVIAEAVENSQKNAALNNITNAHYVCDTAE----- 362 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV--GMVQAYPHILYISCNPDSLCR 330 N +K+ + I VDPPR GL ++ + I YISCN ++ R Sbjct: 363 -------NAMKNWFKEGIQPSVILVDPPRKGLTESFIKASAQTGANRIAYISCNVATMAR 415 Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVRK 365 D+ + + ++++ D FP T H+EC LLV++ Sbjct: 416 DIKLYQELGYELKKVQPVDLFPQTHHVECVSLLVKR 451 >gi|169343089|ref|ZP_02864116.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium perfringens C str. JGS1495] gi|169298999|gb|EDS81073.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium perfringens C str. JGS1495] Length = 455 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 46/158 (29%), Positives = 74/158 (46%), Gaps = 17/158 (10%) Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271 ++ + YCG G +L L++ +V VEI +++ A N N V NV+ S+ Sbjct: 311 EVFDAYCGTGTITLFLSQKAKKVYGVEIIPQAIDNAWINAKENKVENVEFFVGESEVV-- 368 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLC 329 + D+ + + VDPPR G D + + I+Y+SC+P +L Sbjct: 369 ----------IPDLINKGVKADVVVVDPPRKGCDKKLLDAITNIDAKKIVYVSCDPSTLG 418 Query: 330 RDLSILSTT--HTIERLALFDQFPYTRHMECGVLLVRK 365 RDL +L T+E + D FP T H+E LL++K Sbjct: 419 RDLKVLEENGYKTLE-VQPVDMFPNTAHIENVALLIKK 455 >gi|217967096|ref|YP_002352602.1| RNA methyltransferase, TrmA family [Dictyoglomus turgidum DSM 6724] gi|217336195|gb|ACK41988.1| RNA methyltransferase, TrmA family [Dictyoglomus turgidum DSM 6724] Length = 448 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 47/153 (30%), Positives = 75/153 (49%), Gaps = 15/153 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + + YCG G SL L++ ++V +E+ + ++E A N N V NV+ + S+E Sbjct: 305 VFDAYCGIGTISLFLSKKAEKVYGIEVERSAIEDAWKNARINKVKNVEFIWGRSEE---V 361 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCR 330 + R E ++ D I +DPPR G D + + I+YISC P +L R Sbjct: 362 IPRLIEDGKIPD---------AIVLDPPRKGCDQNLLEAIIRAKVKQIIYISCYPSTLAR 412 Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMECGVLL 362 D++IL + + + D FP T H+E LL Sbjct: 413 DVNILVDAGYNLVNIQPVDMFPQTFHVENIALL 445 >gi|55822623|ref|YP_141064.1| TrmA family tRNA methyltransferase [Streptococcus thermophilus CNRZ1066] gi|55738608|gb|AAV62249.1| tRNA methyltransferase, TrmA family [Streptococcus thermophilus CNRZ1066] Length = 453 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 47/155 (30%), Positives = 75/155 (48%), Gaps = 15/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ Y G G L A+ V VE+ + +VE A+ N N + N V S++ A Sbjct: 308 VIDAYSGIGTIGLSFAKQVREVYGVEVIETAVEDAKKNAERNGITNAHYVADSAE---NA 364 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330 M + + D+ I VDPPR GL ++ + V P I Y+SCNP ++ R Sbjct: 365 MAKWSQDGIKPDV---------IIVDPPRKGLTESFIKASVAMQPEKITYVSCNPATMAR 415 Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364 D+ + + ++++ D FP T H+EC LL R Sbjct: 416 DIKLYQDLGYELKKVQPVDLFPQTHHIECVGLLTR 450 >gi|52784631|ref|YP_090460.1| YfjO [Bacillus licheniformis ATCC 14580] gi|52347133|gb|AAU39767.1| YfjO [Bacillus licheniformis ATCC 14580] Length = 468 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 48/181 (26%), Positives = 85/181 (46%), Gaps = 17/181 (9%) Query: 186 SFTQPNAGINVHMLEWVLAATKGIQG--DLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 +F Q N V + + V A K + G +++ YCG G + +A + +++ K S Sbjct: 298 AFFQLNPIQTVKLYDEVKKAAK-LTGREKVVDAYCGVGTIGMWIADGAKEIRGMDVIKES 356 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 ++ A N + + N + V +++ + +E +R + VDPPR+G Sbjct: 357 IDDANQNAKKHGIENARYVTGTAEHWLPKWTKE------------GFRPDVVIVDPPRTG 404 Query: 304 LDDATVGMV-QAYPH-ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVL 361 D + + Q P +Y+SCNP +L +DL L+ + +E + D FP T H+E V Sbjct: 405 CDRTFLDTIRQVKPKRFVYVSCNPSTLAKDLQYLAKDYHVEYIQPVDMFPQTAHVESVVS 464 Query: 362 L 362 L Sbjct: 465 L 465 >gi|167039842|ref|YP_001662827.1| RNA methyltransferase [Thermoanaerobacter sp. X514] gi|166854082|gb|ABY92491.1| RNA methyltransferase, TrmA family [Thermoanaerobacter sp. X514] Length = 454 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 49/162 (30%), Positives = 78/162 (48%), Gaps = 17/162 (10%) Query: 209 IQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266 ++GD ++++YCG G SL A+ V +E +VE A+ N N + NV+ + Sbjct: 304 LKGDETVIDVYCGIGTISLFAAQKAFFVYGIEAVHQAVEDAKRNAYINGIKNVEFI---- 359 Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCN 324 + + E+ L D + + + +DPPR G D + +V P I+Y+SCN Sbjct: 360 -----SGQAEKVMPELVDKGV---KADVVIIDPPRKGCDIPVLEAIVNMNPQKIVYVSCN 411 Query: 325 PDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRK 365 P +L RDL L + + D FPYT H+E L+ K Sbjct: 412 PSTLARDLRYLDDKGYKTMEVQPVDMFPYTHHVESVCLITNK 453 >gi|52079266|ref|YP_078057.1| tRNA (uracil-5-)-methyltransferase [Bacillus licheniformis ATCC 14580] gi|52002477|gb|AAU22419.1| tRNA (uracil-5-)-methyltransferase [Bacillus licheniformis ATCC 14580] Length = 463 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 48/181 (26%), Positives = 85/181 (46%), Gaps = 17/181 (9%) Query: 186 SFTQPNAGINVHMLEWVLAATKGIQG--DLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 +F Q N V + + V A K + G +++ YCG G + +A + +++ K S Sbjct: 293 AFFQLNPIQTVKLYDEVKKAAK-LTGREKVVDAYCGVGTIGMWIADGAKEIRGMDVIKES 351 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 ++ A N + + N + V +++ + +E +R + VDPPR+G Sbjct: 352 IDDANQNAKKHGIENARYVTGTAEHWLPKWTKE------------GFRPDVVIVDPPRTG 399 Query: 304 LDDATVGMV-QAYPH-ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVL 361 D + + Q P +Y+SCNP +L +DL L+ + +E + D FP T H+E V Sbjct: 400 CDRTFLDTIRQVKPKRFVYVSCNPSTLAKDLQYLAKDYHVEYIQPVDMFPQTAHVESVVS 459 Query: 362 L 362 L Sbjct: 460 L 460 >gi|306830030|ref|ZP_07463216.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus mitis ATCC 6249] gi|304427743|gb|EFM30837.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus mitis ATCC 6249] Length = 453 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 43/157 (27%), Positives = 71/157 (45%), Gaps = 14/157 (8%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L++ YCG G A+ + ++I ++E A+ N +N +++E Sbjct: 308 LIDAYCGVGTIGFAFAKKVKSLRGMDIIPEAIEDAKRNAKKMGFDNTHYEAGTAEEIIPR 367 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330 +E YR + VDPPR+GLDD + + Y ++Y+SCN +L R Sbjct: 368 WYQE------------GYRADALIVDPPRTGLDDKLLDTILTYVPEKMVYVSCNVSTLAR 415 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRKPS 367 DL L + + + D FP+T E V LV++ S Sbjct: 416 DLVKLVKVYDLHYIQSVDMFPHTARTEAVVKLVKRKS 452 >gi|300915331|ref|ZP_07132645.1| RNA methyltransferase, TrmA family [Thermoanaerobacter sp. X561] gi|307724834|ref|YP_003904585.1| TrmA family RNA methyltransferase [Thermoanaerobacter sp. X513] gi|300888607|gb|EFK83755.1| RNA methyltransferase, TrmA family [Thermoanaerobacter sp. X561] gi|307581895|gb|ADN55294.1| RNA methyltransferase, TrmA family [Thermoanaerobacter sp. X513] Length = 453 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 49/162 (30%), Positives = 78/162 (48%), Gaps = 17/162 (10%) Query: 209 IQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266 ++GD ++++YCG G SL A+ V +E +VE A+ N N + NV+ + Sbjct: 303 LKGDETVIDVYCGIGTISLFAAQKAFFVYGIEAVHQAVEDAKRNAYINGIKNVEFI---- 358 Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCN 324 + + E+ L D + + + +DPPR G D + +V P I+Y+SCN Sbjct: 359 -----SGQAEKVMPELVDKGV---KADVVIIDPPRKGCDIPVLEAIVNMNPQKIVYVSCN 410 Query: 325 PDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRK 365 P +L RDL L + + D FPYT H+E L+ K Sbjct: 411 PSTLARDLRYLDDKGYKTMEVQPVDMFPYTHHVESVCLITNK 452 >gi|307265883|ref|ZP_07547432.1| RNA methyltransferase, TrmA family [Thermoanaerobacter wiegelii Rt8.B1] gi|306919052|gb|EFN49277.1| RNA methyltransferase, TrmA family [Thermoanaerobacter wiegelii Rt8.B1] Length = 455 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 45/154 (29%), Positives = 75/154 (48%), Gaps = 15/154 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 ++++YCG G SL A+ V +E +VE A+ N N + NV+ + + Sbjct: 310 VIDVYCGIGTISLFAAQKAAFVYGIEAVHQAVEDAKRNAYINGIKNVEFISGDA------ 363 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330 E+ L D + + + +DPPR G D + + +++ P I+Y+SCNP +L R Sbjct: 364 ---EKVMPELADKGVKA---DVVIMDPPRKGCDTSVLEAVIKMNPKKIVYVSCNPSTLAR 417 Query: 331 DLSILS-TTHTIERLALFDQFPYTRHMECGVLLV 363 DL L + + D FPYT H+E L++ Sbjct: 418 DLRYLEDNGYKTMEVQPVDMFPYTHHVESVALVL 451 >gi|227511681|ref|ZP_03941730.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus buchneri ATCC 11577] gi|227085071|gb|EEI20383.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus buchneri ATCC 11577] Length = 472 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 94/391 (24%), Positives = 155/391 (39%), Gaps = 61/391 (15%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFR-------SEPIHYRMRAEFHIWHDGD----DL 58 Y +QL K D ++ + ++ + ++ +P HYR +A F I +DG L Sbjct: 108 YPKQLEFKRDVIKDSLEKYKPAGYRKYKLLPTIGMDDPTHYRNKATFQIRNDGQKVIAGL 167 Query: 59 Y----HIMFDQQTK--------ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQ 106 Y H + D +T + MR M L I E A I ++RA Sbjct: 168 YKHRSHTVVDLKTSALQYPLTMKVMRAVVEMIDDLGIPVYDEEKNAGIIKTVVVRA---- 223 Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY 166 + +D+A VT I + R+ H + ++ N K L + Sbjct: 224 ----ATATDEAQVTFITQSKKLLKKHQLLERID---HDLPEVVSVMQNVNPGKTSLV--W 274 Query: 167 VDERLTVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATK-GIQGDLLELY 217 +E + +AG+ I + N +F Q N + + + A + + L++ Y Sbjct: 275 GEETIHLAGKDKITEVLNNLSFDLSARAFLQVNPEMTAVLYQEAFKALELSGKEKLVDAY 334 Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277 G G L +AR V ++ K +V+ A N N + N A+ Sbjct: 335 SGVGTIGLSVARQVREVRGMDTIKDAVDDANANAIKNGIVN-------------ALYEVG 381 Query: 278 EFNRLKDIDIH-SYRFKTIFVDPPRSGLDDATVGMV-QAYPH-ILYISCNPDSLCRDLSI 334 E +L + I + + VDPPR+GL D+ + + P +YISCNP +L RDL Sbjct: 382 EAEKLLPLWIEDGWNPTAMIVDPPRTGLADSLIDTILDITPKKFVYISCNPSTLARDLVK 441 Query: 335 LSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 L+ + +E + D P T EC V +K Sbjct: 442 LTRKYNVEYIQSVDLMPQTSRCECVVKFKKK 472 >gi|254392236|ref|ZP_05007422.1| RNA methyltransferase [Streptomyces clavuligerus ATCC 27064] gi|294815599|ref|ZP_06774242.1| Putative RNA methyltransferase [Streptomyces clavuligerus ATCC 27064] gi|326443949|ref|ZP_08218683.1| putative RNA methyltransferase [Streptomyces clavuligerus ATCC 27064] gi|197705909|gb|EDY51721.1| RNA methyltransferase [Streptomyces clavuligerus ATCC 27064] gi|294328198|gb|EFG09841.1| Putative RNA methyltransferase [Streptomyces clavuligerus ATCC 27064] Length = 448 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 64/206 (31%), Positives = 97/206 (47%), Gaps = 27/206 (13%) Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGN 222 R +V ER GRT YR F Q + +++ V+ +G+ L+LYCG G Sbjct: 253 RGFVRERAD--GRT--YRVGAGGFWQVHPQAADTLVKAVMQGLMPRKGETALDLYCGVGL 308 Query: 223 FSLVLARHFD---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279 F+ +A VL +E +K +VE AR+N+ +++ VR+ + Q + R Sbjct: 309 FAGAIAERVGDEGAVLGIESSKRAVEDARHNL-----RDLERVRIEQGKVEQVLPR---- 359 Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST 337 R+ D+ I +DPPR+G TV + A I Y++C+P +L RDL Sbjct: 360 TRITSTDL-------IVLDPPRAGAGKRTVTHLASLAARRIAYVACDPAALARDLGYFRE 412 Query: 338 THTIER-LALFDQFPYTRHMECGVLL 362 R L FD FP T H+EC +L Sbjct: 413 AGYRPRTLRAFDLFPMTHHVECVAIL 438 >gi|168028766|ref|XP_001766898.1| predicted protein [Physcomitrella patens subsp. patens] gi|162681877|gb|EDQ68300.1| predicted protein [Physcomitrella patens subsp. patens] Length = 492 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 62/219 (28%), Positives = 95/219 (43%), Gaps = 33/219 (15%) Query: 156 NKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--- 212 +K + + Y+ ERL R L++ NSF Q N +L + ++GD Sbjct: 283 DKEHVLYGKAYITERL----RGLVFEISANSFFQTNTS-QAEVLYQKVEEQCALKGDGSE 337 Query: 213 -LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271 LL+L+CG G L +A+ V E+ + +V AR N A N + N ++ + T Sbjct: 338 VLLDLFCGTGTIGLSMAKRVKHVYGYELVQEAVVDARRNAARNGIQNATFIQGDLNKLTD 397 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLC 329 EF KD R + DP R G+ + ++Q I+YISCNP + Sbjct: 398 ------EFG--KDFP----RPDVVITDPNRPGMHIKLIKYLLQLRARRIVYISCNPATCA 445 Query: 330 RDLSILS----------TTHTIERLALFDQFPYTRHMEC 358 RDL +L T + + + D FP T H+EC Sbjct: 446 RDLDLLCHTGDEGVESPTRYRLVHVQPVDMFPQTPHIEC 484 >gi|213410094|ref|XP_002175817.1| tRNA (uracil-5-)-methyltransferase [Schizosaccharomyces japonicus yFS275] gi|212003864|gb|EEB09524.1| tRNA (uracil-5-)-methyltransferase [Schizosaccharomyces japonicus yFS275] Length = 488 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 48/159 (30%), Positives = 76/159 (47%), Gaps = 22/159 (13%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK-IVRMSSKEFTQ 271 L++ YCG+G FS+ + F V+ VEI+ SV A+ N AN + N + +V + K F + Sbjct: 332 LVDAYCGSGLFSITCSEGFQSVIGVEISSDSVAYAKTNAEANGIKNAEYLVGEAEKIFAK 391 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLC 329 E + +DPPR G D A + + Y ++YISCN + Sbjct: 392 IETPAAE--------------TAMIIDPPRKGCDTAFLDQLLTYSPARVVYISCNVHTQA 437 Query: 330 RDLSI-----LSTTHTIERLALFDQFPYTRHMECGVLLV 363 RD+S L + I + FD FP + H+E ++L+ Sbjct: 438 RDISYILNHELGKDYKINDVRGFDLFPQSHHVESVLVLL 476 >gi|313205382|ref|YP_004044039.1| 23S rRNA m(5)u-1939 methyltransferase [Paludibacter propionicigenes WB4] gi|312444698|gb|ADQ81054.1| 23S rRNA m(5)U-1939 methyltransferase [Paludibacter propionicigenes WB4] Length = 469 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 57/203 (28%), Positives = 92/203 (45%), Gaps = 24/203 (11%) Query: 175 GRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGDLL--ELYCGNGNFS 224 G IY ++E SF Q N+ + L + + G+ L +LY G G + Sbjct: 279 GNECIYEEMEGLKFKIGPKSFYQTNSD-QAYELYKITRNFAQLTGNELVYDLYTGTGTIA 337 Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284 ++ +V+ +E ++E A N N ++N K+ A Sbjct: 338 NFISHQAKQVIGIEYVPEAIEDAFVNSEINKISNTLFYAGDMKDILNAAF---------- 387 Query: 285 IDIHSYRFKTIFVDPPRSGL-DDATVGMVQAYPH-ILYISCNPDSLCRDLSILSTTHTIE 342 I+ H + I DPPR+G+ +D ++ A P I+Y+SCNP + RDLS+L + + Sbjct: 388 IEEHG-KPDVIITDPPRAGMHEDVINAILFAAPERIVYVSCNPATQARDLSLLDCQYKVT 446 Query: 343 RLALFDQFPYTRHMECGVLLVRK 365 + D FP+T H+E VLL RK Sbjct: 447 AIQPVDMFPHTHHVENVVLLERK 469 >gi|291562935|emb|CBL41751.1| 23S rRNA m(5)U-1939 methyltransferase [butyrate-producing bacterium SS3/4] Length = 475 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 47/154 (30%), Positives = 77/154 (50%), Gaps = 14/154 (9%) Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274 +LYCG G S LA+ +V VEI ++E AR N N ++NV+ ++E + Sbjct: 328 DLYCGIGTISSFLAQKAGKVCGVEIIPAAIEDARENAKRNGLDNVEFFVGKAEE---VLP 384 Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCRDL 332 + E N +K I VDPPR G D+ + +V+ P ++Y+SC+ +L RD+ Sbjct: 385 EQYEKNHIK--------ADVIVVDPPRKGCDELCLETIVKMAPEKVVYVSCDSSTLARDV 436 Query: 333 SILS-TTHTIERLALFDQFPYTRHMECGVLLVRK 365 + ++R+ D F + H+E LL +K Sbjct: 437 KYFGENGYAVKRVRTVDMFGMSGHVETVALLTKK 470 >gi|257885254|ref|ZP_05664907.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium 1,231,501] gi|257821106|gb|EEV48240.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium 1,231,501] Length = 460 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 60/222 (27%), Positives = 99/222 (44%), Gaps = 27/222 (12%) Query: 154 RANKTKICLDRDYVDERLTVAGRTLIYRQI-ENSFT-QPNAGINVHMLEWVLAATKGIQG 211 +A KT + + DE + + G+ I QI E +F P A ++ + L +GI+ Sbjct: 252 QAQKTSLVMG----DETIHLWGKEAIEEQINEVTFDLSPRAFFQLNPQQTELLYGEGIKA 307 Query: 212 -------DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRM 264 +++ YCG G L +A+ V ++ ++ A+ N+ +N + Sbjct: 308 LDVQPNETIVDAYCGVGTIGLSVAKQAKEVRGMDTVPQAIADAKKNVERLGYHNTRYEVG 367 Query: 265 SSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYIS 322 ++++ E ++ I VDPPR+GLD+A + + YP ++YIS Sbjct: 368 TAEQVLPKWLNE------------GFQPDGIIVDPPRTGLDNALIQSLLKYPPKKLVYIS 415 Query: 323 CNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 CN +L RDL LS IE L D FP T E V + R Sbjct: 416 CNVSTLARDLVNLSKKFKIEYLQSVDMFPQTARCEVVVKMTR 457 >gi|229830195|ref|ZP_04456264.1| hypothetical protein GCWU000342_02304 [Shuttleworthia satelles DSM 14600] gi|229791493|gb|EEP27607.1| hypothetical protein GCWU000342_02304 [Shuttleworthia satelles DSM 14600] Length = 394 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 93/392 (23%), Positives = 164/392 (41%), Gaps = 68/392 (17%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69 Y++QL K + ++ A+ P + + P +YR +A H + K Sbjct: 27 YKEQLKRKEKEVADLLKAYGRPEPILGMNFPYYYRNKA------------HAVLGGSLKG 74 Query: 70 RMRIDYFMPGS---LLINALMIE------MMATIR-LEPLLRAKLFQIDY---------- 109 ++ + GS + I+ IE ++A++R L P + + + D Sbjct: 75 KIVCGTYERGSHRIVNIDRCQIEDRECDQLIASVRELLPSFKVEPYNEDTGRGCLRHIIA 134 Query: 110 -LTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR---- 164 T+ Q ++ L+ + + ++ LR A +Q I + + + DR Sbjct: 135 RRTADGGQIMLILVTAQAAFPSRKKFVSALRKAHPNITTILQNINGQSTSVVLGDRYEVL 194 Query: 165 ---DYVDERLTVAGRTLIYRQIENSFTQPNA--GINVHMLEWVLAATKGIQGDLLELYCG 219 Y+++RL A +R +F Q N+ ++ L +A KG + +L+ YCG Sbjct: 195 YGPGYIEDRLMGA----RFRISPGAFYQVNSQQTKKLYRLAVDMADLKGKE-RVLDTYCG 249 Query: 220 NGNFSLVLARHFDR-------VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 G + A R ++ VE +V AR N N + + V + F Sbjct: 250 TGTIGIAAAVDLARRTKEPMELIGVECNPAAVRDARINARVNGLRQARFVVADAGAF--- 306 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSG-LDDATVGMVQAYPH-ILYISCNPDSLCR 330 M E E R D+ +F+DPPR+G ++ + + + P I+YISC+P + R Sbjct: 307 MLAEAEAGRSCDL---------VFMDPPRAGSTEEFLLALRRLVPEKIVYISCDPKTQAR 357 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLL 362 DL L + + I R+A D FP+T +E VLL Sbjct: 358 DLKYLDSAYAIRRIAPVDMFPFTDGIENVVLL 389 >gi|168209109|ref|ZP_02634734.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium perfringens B str. ATCC 3626] gi|170712831|gb|EDT25013.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium perfringens B str. ATCC 3626] Length = 455 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 46/158 (29%), Positives = 73/158 (46%), Gaps = 17/158 (10%) Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271 ++ + YCG G +L L++ +V VEI +++ A N N V NV+ S+ Sbjct: 311 EVFDAYCGTGTITLFLSQKAKKVYGVEIIPQAIDNAWINAKENKVENVEFFVGESEVV-- 368 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLC 329 + D+ + + VDPPR G D + + I+Y+SC+P +L Sbjct: 369 ----------IPDLINKGVKADVVVVDPPRKGCDKKLLDAITNIDAKKIVYVSCDPSTLG 418 Query: 330 RDLSILSTT--HTIERLALFDQFPYTRHMECGVLLVRK 365 RDL +L T+E + D FP T H+E L+ RK Sbjct: 419 RDLKVLEDNGYKTLE-VQPVDMFPNTSHIETVALICRK 455 >gi|253990336|ref|YP_003041692.1| 23S rRNA methyluridine methyltransferase [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253781786|emb|CAQ84949.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Photorhabdus asymbiotica] Length = 377 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 47/156 (30%), Positives = 75/156 (48%), Gaps = 22/156 (14%) Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271 + +L+CG G F L A R+ +EI+ +++ AR + + N++ + S F Sbjct: 236 SMWDLFCGVGGFGLHCADKNTRLTGIEISPEAIDCARDSAKTLGLENIEFQALDSTRFAI 295 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSG----LDDATVGMVQAYPHILYISCNPDS 327 A + E + V+PPR G L D MV Y ILY SCN + Sbjct: 296 AKEQIPEL---------------VLVNPPRRGIGKELCDYLSRMVPGY--ILYSSCNAQT 338 Query: 328 LCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363 + +D++ L+ + +E++ LFD FP+T H E LLV Sbjct: 339 MAKDIAALA-NYRVEKIQLFDMFPHTEHYEVLTLLV 373 >gi|183603351|ref|ZP_02964368.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae CDC1087-00] gi|183569936|gb|EDT90464.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae CDC1087-00] Length = 367 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 43/155 (27%), Positives = 70/155 (45%), Gaps = 14/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L++ YCG G A+ + ++I ++E A+ N +N +++E Sbjct: 224 LIDAYCGVGTIGFAFAKKVKTLRGMDIIPEAIEDAKRNAKRMGFDNTHYEAGTAEEIIPR 283 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330 +E YR + VDPPR+GLDD + + Y ++YISCN +L R Sbjct: 284 WYKE------------GYRADALIVDPPRTGLDDKLLDTILTYVPEKMVYISCNVSTLAR 331 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 DL L + + + D FP+T E V L++K Sbjct: 332 DLVRLVEVYDLHYIQSVDMFPHTARTEAVVKLIKK 366 >gi|261856076|ref|YP_003263359.1| RNA methyltransferase, TrmA family [Halothiobacillus neapolitanus c2] gi|261836545|gb|ACX96312.1| RNA methyltransferase, TrmA family [Halothiobacillus neapolitanus c2] Length = 442 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 58/189 (30%), Positives = 89/189 (47%), Gaps = 30/189 (15%) Query: 187 FTQPNAGIN----VHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAK 241 F Q N +N V LEW+ GD +L+L+ G GNF+L +AR +V AVE+ + Sbjct: 270 FIQINTDVNRAMIVQALEWLDVQP----GDHVLDLFAGLGNFTLPIARKAAKVTAVELDE 325 Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT---IFVD 298 V+ + AAN + N + V N + H + +T + +D Sbjct: 326 HMVKRGAQSAAANGITNTEHVIG---------------NLFEPDPTHLWMQQTYDRVLLD 370 Query: 299 PPRSGLDDATVGMVQAYPH-ILYISCNPDSLCRDLSILSTTHTIERLA--LFDQFPYTRH 355 PPR+G + + + P I+Y+SC+P SL RD IL H +A + D FP+T H Sbjct: 371 PPRAGAEAMMPHIARFAPERIVYVSCHPGSLARDAHILVREHGYRLIAAGVMDMFPHTSH 430 Query: 356 MECGVLLVR 364 +E + R Sbjct: 431 IESMAVFER 439 >gi|167037107|ref|YP_001664685.1| RNA methyltransferase [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320115522|ref|YP_004185681.1| TrmA family RNA methyltransferase [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166855941|gb|ABY94349.1| RNA methyltransferase, TrmA family [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319928613|gb|ADV79298.1| RNA methyltransferase, TrmA family [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 460 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 46/155 (29%), Positives = 75/155 (48%), Gaps = 15/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 ++++YCG G SL A+ V +E +VE A+ N N + NV+ + + Sbjct: 310 VIDVYCGIGTISLFAAQKAAFVYGIEAVHQAVEDAKRNAYINGIKNVEFISGDA------ 363 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330 E+ L D + + + +DPPR G D + + +++ P I+Y+SCNP +L R Sbjct: 364 ---EKVMPELVDKGVKA---DVVIMDPPRKGCDTSVLEAVIKMNPKKIVYVSCNPSTLAR 417 Query: 331 DLSILS-TTHTIERLALFDQFPYTRHMECGVLLVR 364 DL L + + D FPYT H+E L +R Sbjct: 418 DLRYLEDNGYKTMEVQPVDMFPYTYHVESVALALR 452 >gi|301299733|ref|ZP_07205983.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus salivarius ACS-116-V-Col5a] gi|300852664|gb|EFK80298.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus salivarius ACS-116-V-Col5a] Length = 459 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 43/154 (27%), Positives = 78/154 (50%), Gaps = 16/154 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G SL +A+ +V VEI ++E A++N + N ++N+ ++ + + Sbjct: 312 VIDAYCGIGTISLNMAKFAKKVYGVEIVPEAIEDAKHNASLNDLDNLDFEVGEAEVWMEK 371 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCR 330 +++ + I VDPPR GL + + V P I+Y+SCNP +L R Sbjct: 372 WQKQ------------GIKPDVIMVDPPRKGLTSSLIQSAVTMEPKKIVYVSCNPATLVR 419 Query: 331 DL-SILSTTHTIER-LALFDQFPYTRHMECGVLL 362 D+ + + + + + DQFP T H+E +L Sbjct: 420 DIQEFMELGYQVTKPIQPVDQFPQTTHVESVTVL 453 >gi|255691623|ref|ZP_05415298.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides finegoldii DSM 17565] gi|260622692|gb|EEX45563.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides finegoldii DSM 17565] Length = 472 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 57/201 (28%), Positives = 93/201 (46%), Gaps = 26/201 (12%) Query: 175 GRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGDLL--ELYCGNGNFS 224 G+ I+ ++E SF Q N+ + L V G+ G+ L +LY G G + Sbjct: 282 GKDHIFEEMEGLRFKVGPKSFYQTNSE-QAYNLYKVAREFAGLTGNELVYDLYTGTGTIA 340 Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE-FTQAMRREREFNRLK 283 ++R +V+ +E ++E A+ N N + N K+ TQ Sbjct: 341 NFVSRQARQVIGIEYVPEAIEDAKVNAEINDIKNALFYAGDMKDMLTQDF---------- 390 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQ-AYPH-ILYISCNPDSLCRDLSILSTTHTI 341 I+ H R I DPPR+G+ + ++ A P I+Y+SCNP + RDL +L + + Sbjct: 391 -INQHG-RPDVIITDPPRAGMHQDVIDVILFAEPKRIVYVSCNPATQARDLQLLDKKYKV 448 Query: 342 ERLALFDQFPYTRHMECGVLL 362 + + D FP+T H+E VLL Sbjct: 449 KAVQPVDMFPHTHHVENVVLL 469 >gi|227486795|ref|ZP_03917111.1| TrmA family RNA methyltransferase [Anaerococcus lactolyticus ATCC 51172] gi|227235265|gb|EEI85280.1| TrmA family RNA methyltransferase [Anaerococcus lactolyticus ATCC 51172] Length = 456 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 54/214 (25%), Positives = 102/214 (47%), Gaps = 26/214 (12%) Query: 157 KTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPN--AGINVHMLEWVLAATKGIQGDLL 214 K K+ ++Y+ E + L +R SF QPN ++ + LA D+L Sbjct: 263 KIKLIYGKEYITEEMM----GLQFRISPFSFFQPNVFTAEKLYQKAFDLAEIDKTM-DIL 317 Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274 +LY G G + ++A +EI + +VE A+ N N ++NV + Sbjct: 318 DLYSGTGTITQLMASVAKSATGIEIVEEAVEKAKENARINGLDNVNFLCG---------- 367 Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDL 332 + L++I+ ++ + +DPPR+G+ A++ + +YISCNP + +L Sbjct: 368 -----DVLEEIEKVGNKYDVVVLDPPRAGISPASLEKILNIDCKKFVYISCNPKTQMENL 422 Query: 333 -SILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 + + + I+ ++DQFP +RH+E + L++K Sbjct: 423 KTFIEKGYEIKDYEIYDQFPNSRHLE-AIALIQK 455 >gi|226330766|ref|ZP_03806284.1| hypothetical protein PROPEN_04686 [Proteus penneri ATCC 35198] gi|225201561|gb|EEG83915.1| hypothetical protein PROPEN_04686 [Proteus penneri ATCC 35198] Length = 369 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 46/157 (29%), Positives = 74/157 (47%), Gaps = 18/157 (11%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L +++CG G F L A ++ +EI+ ++E AR + + +V+ + S + Sbjct: 229 LWDMFCGTGGFGLHCADKSTQLTGIEISPEAIECARLSAQELGLEHVEFQALDSTGYALT 288 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCR 330 E + V+PPR G+ +A G + ILY SCN ++ + Sbjct: 289 KESVPEL---------------VLVNPPRRGIGEALCGYLNTMKPRFILYSSCNAQTMAK 333 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRKPS 367 D+ L T + I+R+ LFD FP+T H E LLV K S Sbjct: 334 DIQQL-THYQIDRVQLFDMFPHTSHYEVLTLLVLKDS 369 >gi|116330374|ref|YP_800092.1| tRNA (uracil-5-)-methyltransferase [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116124063|gb|ABJ75334.1| tRNA (uracil-5-)-methyltransferase [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 393 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 44/155 (28%), Positives = 70/155 (45%), Gaps = 16/155 (10%) Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271 ++++ YCG G SL +A +V+ +E S+ +A AN + NV + Q Sbjct: 253 NVVDAYCGIGTISLYVASKSKKVVGLEENPNSIRSAVGAAKANGIVNVAFTKGKVLRTLQ 312 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLC 329 A E+ + +DPPR GLD T ++ ILY+SCNP++L Sbjct: 313 AALNEKS--------------DVVILDPPREGLDPETKKILLNSKIHKILYVSCNPETLL 358 Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 RD L+ ++ D FP+T H+E + R Sbjct: 359 RDAVALTKVFKYTKMTPVDLFPHTSHLESVSVFTR 393 >gi|158319773|ref|YP_001512280.1| RNA methyltransferase [Alkaliphilus oremlandii OhILAs] gi|158139972|gb|ABW18284.1| RNA methyltransferase, TrmA family [Alkaliphilus oremlandii OhILAs] Length = 450 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 64/257 (24%), Positives = 113/257 (43%), Gaps = 39/257 (15%) Query: 111 TSQSDQAIVTLIYHRLLDDAWRECAI--RLRDALHARKYQIQLIGRANKTKICLDRDYVD 168 TSQS I+H L D + R+ LH + +A++ ++ RDY+ Sbjct: 215 TSQSP------IHHEALKDMILSLNLSGRIAGILHTINDGLGDTVKADQMELLYGRDYIV 268 Query: 169 ERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-----LELYCGNGNF 223 E L L ++ SF Q N+ E + + GD+ +LY G G Sbjct: 269 EELL----GLKFKISPFSFFQTNS----LGAEKLYTIAREFAGDIDDKIVFDLYSGTGTI 320 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 + ++A +V+ +EI + +VE A+ N N ++NV+ + E ++ + + Sbjct: 321 AQIMAPVAKKVIGIEIVEEAVEMAKENAKMNGLDNVEFIAGDVLEAVNDLKEKPDL---- 376 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCRDLSI-LSTTHT 340 I +DPPR G+ + ++ P +Y+SCNP +L RDL + + + Sbjct: 377 -----------IVIDPPRDGIHPKAIHKIIDFNPDTFVYVSCNPVTLVRDLKVFMERGYR 425 Query: 341 IERLALFDQFPYTRHME 357 +E++ L D F T H+E Sbjct: 426 VEKVKLMDMFARTNHVE 442 >gi|332686169|ref|YP_004455943.1| TrmA family RNA methyltransferase [Melissococcus plutonius ATCC 35311] gi|332370178|dbj|BAK21134.1| RNA methyltransferase, TrmA family [Melissococcus plutonius ATCC 35311] Length = 460 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 48/153 (31%), Positives = 72/153 (47%), Gaps = 15/153 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G +L LA V VEI + ++ AR N A N + N ++E Sbjct: 312 VVDAYCGIGTIALSLAEQVKHVYGVEIIEAAILDARENAAINQIENCTFNIGKAEEV--- 368 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM-VQAYPH-ILYISCNPDSLCR 330 + D IFVDPPR GL ++ + + P+ I+YISCNP +L R Sbjct: 369 ---------MIDWQKAGISPNIIFVDPPRKGLTESFIETCTEMDPNRIIYISCNPATLAR 419 Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLL 362 DL + + + ++ D FP T H+E LL Sbjct: 420 DLKLFAELGYETRKIQPVDLFPQTYHVETVALL 452 >gi|323489776|ref|ZP_08095001.1| putative RNA methyltransferase [Planococcus donghaensis MPA1U2] gi|323396514|gb|EGA89335.1| putative RNA methyltransferase [Planococcus donghaensis MPA1U2] Length = 453 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 58/205 (28%), Positives = 94/205 (45%), Gaps = 26/205 (12%) Query: 166 YVDERLTVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGD--LLE 215 + DE LT+ G+ +I +I + SF Q N + +L A + G+ +++ Sbjct: 254 FGDETLTLWGKDVIEDRIGDVRFEISARSFYQINP-VQTEVLYGQALAYAQLTGEETVID 312 Query: 216 LYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275 YCG G SL LA+ V+ VEI ++E A+ N N + N +++ Sbjct: 313 AYCGIGTISLFLAQRAKFVMGVEIVPQAIEDAKRNAELNGLTNTLFEAGPAEQVI----- 367 Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLS 333 R + K D+ + VDPPR G D+ + + Q ++Y+SCNP +L RDL Sbjct: 368 PRWYKEGKKADV-------LVVDPPRKGCDEQLLHTILKQRPTRVVYVSCNPATLARDLR 420 Query: 334 ILS-TTHTIERLALFDQFPYTRHME 357 IL + + + D FP + H E Sbjct: 421 ILEDGGYRTKEVQPVDMFPQSTHCE 445 >gi|300172623|ref|YP_003771788.1| RNA m5u methyltransferase family [Leuconostoc gasicomitatum LMG 18811] gi|299887001|emb|CBL90969.1| RNA m5u methyltransferase family [Leuconostoc gasicomitatum LMG 18811] Length = 498 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 60/205 (29%), Positives = 94/205 (45%), Gaps = 19/205 (9%) Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPN-AGINVHMLEWVLAATKGIQGDLLELYCGNGN 222 +DY++E TV G+T ++ +F Q N + V E +LA L++ Y G G Sbjct: 309 KDYIEE--TVMGKT--FQLSPRAFMQLNYTQMAVVYKEALLALDLTHADKLVDAYAGVGT 364 Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282 L LA V +EI +V+ A N NH+ N + +++E + E Sbjct: 365 IGLSLADKVGEVRGMEIIPEAVDDANINAKINHIENAQYEVGTAEELFPKWQSE------ 418 Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCRDLSILSTTHT 340 + + VDPPR+GLD A +++ P +YISCN +L RDL L+ + Sbjct: 419 ------GWLADALVVDPPRTGLDTALRREILRTKPEKFVYISCNASTLARDLVDLTKAYK 472 Query: 341 IERLALFDQFPYTRHMECGVLLVRK 365 ++ + D FP T E V L R+ Sbjct: 473 VDYIQSIDMFPQTARWEGVVKLTRR 497 >gi|288905623|ref|YP_003430845.1| RNA methyltransferase [Streptococcus gallolyticus UCN34] gi|288732349|emb|CBI13921.1| putative RNA methyltransferase [Streptococcus gallolyticus UCN34] Length = 456 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 47/157 (29%), Positives = 74/157 (47%), Gaps = 19/157 (12%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ Y G G L A++ V VE+ + +VE A+ N A N + N V S++ Sbjct: 308 VIDAYSGIGTIGLSFAKNVKAVYGVEVIEEAVEDAKRNAALNGITNAHYVADSAEHAMAT 367 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD----ATVGMVQAYPHILYISCNPDSL 328 ++ + I VDPPR GL + A+V M I YISCNP ++ Sbjct: 368 WSKD------------GIKPSVILVDPPRKGLTENFIKASVAMQPE--KITYISCNPATM 413 Query: 329 CRDLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364 RD+ + + ++++ D FP T H+E LLVR Sbjct: 414 ARDIKLYQELGYKLQKVQPVDLFPNTHHVEAVSLLVR 450 >gi|332983359|ref|YP_004464800.1| 23S rRNA m(5)U-1939 methyltransferase [Mahella australiensis 50-1 BON] gi|332701037|gb|AEE97978.1| 23S rRNA m(5)U-1939 methyltransferase [Mahella australiensis 50-1 BON] Length = 456 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 54/165 (32%), Positives = 83/165 (50%), Gaps = 18/165 (10%) Query: 204 AATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVR 263 A G Q +L+ YCG G SL+ A+ ++ +E + +V+ AR N N ++NV Sbjct: 303 AGLDGTQ-TVLDAYCGIGTISLIAAQKAAKIYGIEEIQQAVDDARENARLNDISNV---- 357 Query: 264 MSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYI 321 EF A + E R + + R I +DPPR G D + V+ P ++Y+ Sbjct: 358 ----EFICA-KAEDAIGRFIEDKV---RIDVIIMDPPRKGCDKGFLETAVRLCPERMVYV 409 Query: 322 SCNPDSLCRDLSILSTTHTIERLAL--FDQFPYTRHMECGVLLVR 364 SCNP +L RD+ L+ H + A+ D FP+T H+E VL+ R Sbjct: 410 SCNPATLARDMRFLA-DHGYKATAVQPVDMFPHTTHVETVVLMSR 453 >gi|293605691|ref|ZP_06688069.1| 23S rRNA (uracil-5-)-methyltransferase [Achromobacter piechaudii ATCC 43553] gi|292815929|gb|EFF75032.1| 23S rRNA (uracil-5-)-methyltransferase [Achromobacter piechaudii ATCC 43553] Length = 517 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 68/231 (29%), Positives = 104/231 (45%), Gaps = 34/231 (14%) Query: 144 ARKYQIQ--LIGRANKTKICLDRDYVDE---RLTVAGRTLIYRQIENSFTQPNAGINVHM 198 A K+ +Q L + +T L+R++ D + G + YR + FTQ N IN M Sbjct: 216 AAKHNVQWWLQAKGPETVHPLEREHADTLSYTMPEFGLRMPYRPTD--FTQVNHAINRSM 273 Query: 199 LEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVN 257 + L D + +L+CG GNF+L LA + VE +K + A ++ AA H Sbjct: 274 VSRALKLLDVQPTDRVADLFCGLGNFTLPLATQGREAVGVEGSKALTDRA-FDAAARH-- 330 Query: 258 NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR----FKTIFVDPPRSGLDDATVGM-- 311 A R L ++D H R F + +DPPR G + + Sbjct: 331 ------------GLAERTSFATLNLFEVDAHWLRSLGYFDRMLIDPPREGAHAVSQALSE 378 Query: 312 --VQAYPH-ILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTRHME 357 VQ P I+Y+SCNP +L RD SIL + ++ + + FP+T H+E Sbjct: 379 LSVQERPRRIVYVSCNPATLARDASILVHEGGYELKSAGVINMFPHTGHVE 429 >gi|227432075|ref|ZP_03914088.1| TrmA family tRNA (uracil-5-)-methyltransferase [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227352157|gb|EEJ42370.1| TrmA family tRNA (uracil-5-)-methyltransferase [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 464 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 53/181 (29%), Positives = 82/181 (45%), Gaps = 21/181 (11%) Query: 185 NSFTQPNAGINVHMLEWVLAATKG---IQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241 NSF Q N + + LAA K +++ Y G G +L +A ++ V++ + Sbjct: 289 NSFYQVNPQTTATL--YALAAEKANLKPTDVVVDAYSGIGTITLSVADKVKKIYGVDVVE 346 Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301 ++E A N N + N + V + E + + D + +FVDPPR Sbjct: 347 GAIEDAEKNAKNNQITNAEFVLADAPE---------QMAKWAD---EGLKPNVVFVDPPR 394 Query: 302 SGLDDATVGMVQAY--PHILYISCNPDSLCRD-LSILSTTHTIE-RLALFDQFPYTRHME 357 GL + V+A +YISCNP +L RD + IL+ IE + DQFP T H+E Sbjct: 395 KGLTQELIDAVKAMNPEKFVYISCNPATLTRDAVQILAAGFEIEGAVQPLDQFPQTTHVE 454 Query: 358 C 358 Sbjct: 455 S 455 >gi|315613133|ref|ZP_07888043.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis ATCC 49296] gi|315314695|gb|EFU62737.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis ATCC 49296] Length = 452 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 47/156 (30%), Positives = 79/156 (50%), Gaps = 15/156 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ Y G G L +A+H V VE+ +VE ++ N A N++ N V +++ A Sbjct: 308 VIDAYSGIGTIGLSVAKHVKEVYGVEMIPEAVENSQKNAALNNITNAHYVCDTAE---NA 364 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV--GMVQAYPHILYISCNPDSLCR 330 M+ N LK+ + I VDPPR GL ++ + I YISCN ++ R Sbjct: 365 MK-----NWLKE----GIQPTVILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMAR 415 Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVRK 365 D+ + + ++++ D FP T H+EC LLV++ Sbjct: 416 DIKLYQELGYELKKVQPMDLFPQTHHVECVSLLVKR 451 >gi|239625145|ref|ZP_04668176.1| RNA methyltransferase [Clostridiales bacterium 1_7_47_FAA] gi|239519375|gb|EEQ59241.1| RNA methyltransferase [Clostridiales bacterium 1_7_47FAA] Length = 554 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 55/216 (25%), Positives = 96/216 (44%), Gaps = 22/216 (10%) Query: 155 ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-- 212 NK + + Y+ + L +R SF Q N + +L G++G Sbjct: 356 GNKENVLYGKGYIVDELC----GCKFRISSKSFYQINP-VQTEVLYGKALELAGLKGQEV 410 Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G ++ +R +V+ VE+ + +V+ A N N ++N++ + F Sbjct: 411 VIDAYCGIGTIGIIASRQAGQVIGVELNQDAVKDAVNNAKMNDIDNIRFYCNDAGRFMVN 470 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCR 330 M R D+ + +DPPRSG + + + ++Y+SCNP++L R Sbjct: 471 M-----AERGDKADV-------VIMDPPRSGSTEEFMDSIAKLGAGKVVYVSCNPETLVR 518 Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVRK 365 D+ + + E + D FP TRH E V L RK Sbjct: 519 DVRYMKKLGYAAEGVWPVDMFPATRHTEIIVELCRK 554 >gi|291549934|emb|CBL26196.1| 23S rRNA m(5)U-1939 methyltransferase [Ruminococcus torques L2-14] Length = 456 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 61/220 (27%), Positives = 101/220 (45%), Gaps = 23/220 (10%) Query: 142 LHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEW 201 LH + + ++++T+I +D+ E+L L ++ SF QPN+ + E Sbjct: 246 LHILNDSLSDVVKSDETRILYGQDFFYEKLL----GLEFKITPFSFFQPNSKGAEVLYET 301 Query: 202 VLAATKGIQGDLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK 260 V I ++ +L+ G G VLA +V+ VEI + +VEAA+ N N + N K Sbjct: 302 VREYIGDIDNQVVFDLFSGTGTIGQVLAPVAKKVIGVEIIEEAVEAAKENAVRNGLYNCK 361 Query: 261 IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HI 318 + F L +I+ + I +DPPR G+ + + Y I Sbjct: 362 FIAGDV------------FKVLDEIE---EKPDVIVLDPPRDGIHPKALPKILNYGVDKI 406 Query: 319 LYISCNPDSLCRDLSILS-TTHTIERLALFDQFPYTRHME 357 +YISC SL RDL ++ + +E++ DQF T H+E Sbjct: 407 VYISCKMTSLARDLEMMQLAGYRVEKMTAVDQFCETVHVE 446 >gi|262196875|ref|YP_003268084.1| deoxyribonuclease/rho motif-related TRAM [Haliangium ochraceum DSM 14365] gi|262080222|gb|ACY16191.1| deoxyribonuclease/rho motif-related TRAM [Haliangium ochraceum DSM 14365] Length = 491 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 87/362 (24%), Positives = 141/362 (38%), Gaps = 46/362 (12%) Query: 32 NLQIFRSE--PIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMP---------GS 80 L+ RSE P H+R RA H W + + E I +F P G Sbjct: 149 ELRPVRSEVPPYHWRRRARLH-W----------YRPRKSEAATIGFFGPRSHRVSPIDGC 197 Query: 81 LLINALMIEMMATIR--LEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDA------WR 132 + + ++ ++ IR L P L + ++ L +++ LD A Sbjct: 198 VQLAPPLLAALSVIRERLAPTL-GRTGSMELLAGHGGDVHLSIRGRCDLDAAADLVGQGP 256 Query: 133 ECAIRLRDALHARKYQIQLIGRANKTKICLDRDY-----VDERLTVAGRTLIYRQIENSF 187 +R+ D + + R K I L+ + V + + G + ++EN+ Sbjct: 257 VVGVRVEDQAGQPGARRRPPARFGKPHIELEAGFFGRADVFAQSSADGNRALLDEVENAL 316 Query: 188 TQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA 247 + + + G +LEL+ G GN + LA H R++AVE KP Sbjct: 317 RDVAQSQSQSQSQSAEESAGGGGLAILELHAGAGNLTRALATHAARLVAVERRKPP---- 372 Query: 248 RYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307 + + + A ++L D D RF I +DPPR+G + Sbjct: 373 -WTLPVGLEAASADAAAVAARAFVAGDVADVCDKLSDADA---RFDVIVLDPPRTGAREV 428 Query: 308 TVGMVQAYP-HILYISCNPDSLCRDLSILSTTHTIERLA-LFDQFPYTRHMECGVLLVRK 365 + P +I+Y+SCNP +L RDL +LS R A D P T H+E LL R+ Sbjct: 429 LEPLSALAPGYIIYVSCNPATLARDLDVLSEHGYAARWAQPLDLMPQTSHIEVVTLLERR 488 Query: 366 PS 367 P+ Sbjct: 489 PA 490 >gi|161501856|ref|NP_763285.2| 23S rRNA methyluridine methyltransferase [Vibrio vulnificus CMCP6] gi|50401569|sp|Q8D4B4|RUMB_VIBVU RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName: Full=23S rRNA(M-5-U747)-methyltransferase gi|319999780|gb|AAO08275.2| 23S rRNA (uracil-5-)-methyltransferase RumB [Vibrio vulnificus CMCP6] Length = 376 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 46/155 (29%), Positives = 85/155 (54%), Gaps = 18/155 (11%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + +L+CG G F+L A H ++V+ +EI + ++ +A+ + ++N++ + S ++QA Sbjct: 238 MWDLFCGVGGFALHCAPHAEQVIGIEIEEEAINSAKLSAQQLGIDNLRFSALDSAAYSQA 297 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCR 330 + + I V+PPR GL A ++ A +++Y SCNP ++ + Sbjct: 298 QTQAADL---------------ILVNPPRRGLGQALSEQLEQLASQYLIYSSCNPVTMQQ 342 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 DL+ L ++ +ER FD FP+T H E +LLVR+ Sbjct: 343 DLAHL-PSYRVERAQWFDMFPHTDHAEVMMLLVRQ 376 >gi|326391815|ref|ZP_08213332.1| RNA methyltransferase, TrmA family [Thermoanaerobacter ethanolicus JW 200] gi|325992144|gb|EGD50619.1| RNA methyltransferase, TrmA family [Thermoanaerobacter ethanolicus JW 200] Length = 455 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 45/154 (29%), Positives = 75/154 (48%), Gaps = 15/154 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 ++++YCG G SL A+ V +E +VE A+ N N + NV+ + + Sbjct: 310 VIDVYCGIGTISLFAAQKAAFVYGIEAVYQAVEDAKRNAYINGIKNVEFISGDA------ 363 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330 E+ L D + + + +DPPR G D + + +++ P I+Y+SCNP +L R Sbjct: 364 ---EKVMPELADKGVKA---DVVIMDPPRKGCDTSVLEAVIKMNPKKIVYVSCNPSTLAR 417 Query: 331 DLSILS-TTHTIERLALFDQFPYTRHMECGVLLV 363 DL L + + D FPYT H+E L++ Sbjct: 418 DLRYLEDNGYKTMEVQPVDMFPYTSHVESVALVL 451 >gi|289422763|ref|ZP_06424602.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Peptostreptococcus anaerobius 653-L] gi|289156818|gb|EFD05444.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Peptostreptococcus anaerobius 653-L] Length = 452 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 53/211 (25%), Positives = 92/211 (43%), Gaps = 28/211 (13%) Query: 168 DERLTVAGRTLIYRQIEN--------SFTQPN--AGINVHMLEWVLAATKGIQGDLLELY 217 DE + GR Y ++ SF Q N ++ + A +G + +LY Sbjct: 257 DEMRILYGRDYFYEEVLGLRFKVSPFSFFQTNTKGAEALYTIARKFAGDRGHGKVVFDLY 316 Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277 G G ++A+ +V +E+ + +V AA N N+++N + + + ++ + Sbjct: 317 SGTGTIGQLMAKTAKKVYGIELVEEAVVAANQNAVLNNLDNCEFIAGDVAKVVSSLPEKP 376 Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRD-LSI 334 E I VDPPR+G+ V + + I+Y+SCNP SL + + Sbjct: 377 EL---------------IIVDPPRAGILGNGVKDIAEFGAKEIVYVSCNPRSLVENVVEF 421 Query: 335 LSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 + +++L L D FP T H E VL+ RK Sbjct: 422 EDRGYKLDKLELMDLFPNTPHCESVVLMTRK 452 >gi|190344507|gb|EDK36191.2| hypothetical protein PGUG_00289 [Meyerozyma guilliermondii ATCC 6260] Length = 568 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 59/224 (26%), Positives = 116/224 (51%), Gaps = 25/224 (11%) Query: 153 GRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWV--LAATKGIQ 210 G ++KT + + E++ + I++ N F Q N+ I ++++V ++KGI+ Sbjct: 355 GESSKTCLTDSKKVCTEKIGES----IFQFPANEFFQVNSSILPDVVDFVRYSMSSKGIR 410 Query: 211 GDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHV---NNVKIVRMS 265 ++++ YCG+G F + LA +V+ +EI++ +++ A +N N + +V+ + + Sbjct: 411 -NIVDAYCGSGFFGISLANDVKNGKVVGIEISRQAIKYATHNAKLNGLAVPQHVQFIEGT 469 Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY-PH-ILYISC 323 S A+ + F K + + +DP R G D++ + + + P I+Y+SC Sbjct: 470 SN----AIFKHESFLSAK----LNPEETMVIIDPSRKGSDESFLQQLHEFGPKLIVYVSC 521 Query: 324 NPDSLCRDL---SILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 N S RDL + +S +T+ + FD FP T+H+EC +L R Sbjct: 522 NVFSQARDLQYFTAMSQKYTVHEVIGFDFFPQTKHVECVAVLER 565 >gi|189466070|ref|ZP_03014855.1| hypothetical protein BACINT_02440 [Bacteroides intestinalis DSM 17393] gi|189434334|gb|EDV03319.1| hypothetical protein BACINT_02440 [Bacteroides intestinalis DSM 17393] Length = 476 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 56/205 (27%), Positives = 94/205 (45%), Gaps = 28/205 (13%) Query: 172 TVAGRTLIYRQIEN--------SFTQPNA--GINVHMLEWVLAATKGIQGDLLELYCGNG 221 T G+ I+ ++E SF Q N+ N++ + A G + + +LY G G Sbjct: 280 TFKGKDHIFEEMEGLRFKIGPKSFYQTNSEQAYNLYKIARNFAGLTGKEL-VYDLYTGTG 338 Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE-FTQAMRREREFN 280 + +++ +V+ +E ++E A+ N N + N K+ TQ Sbjct: 339 TIANFVSKQARQVIGIEYVPEAIEDAKVNAEINGIENTLFFAGDMKDMLTQDF------- 391 Query: 281 RLKDIDIHSY-RFKTIFVDPPRSGLDDATVGMVQ-AYPH-ILYISCNPDSLCRDLSILST 337 I+ Y R I DPPR+G+ V ++ A P I+Y+SCNP + RDL +L Sbjct: 392 ------INQYGRPDVIITDPPRAGMHQDVVDVILFAEPKRIVYVSCNPATQARDLQLLDV 445 Query: 338 THTIERLALFDQFPYTRHMECGVLL 362 + ++ + D FP+T H+E VLL Sbjct: 446 KYKVKAVQPVDMFPHTHHVENVVLL 470 >gi|322389307|ref|ZP_08062867.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus parasanguinis ATCC 903] gi|321144051|gb|EFX39469.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus parasanguinis ATCC 903] Length = 452 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 47/155 (30%), Positives = 78/155 (50%), Gaps = 15/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ Y G G L +A+H V VE+ +VE ++ N A N++ N V +++ A Sbjct: 308 VIDAYSGIGTIGLSVAKHVKEVYGVEVIPEAVENSQKNAALNNITNAHYVCDTAE---NA 364 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV--GMVQAYPHILYISCNPDSLCR 330 M+ N LK+ + I VDPPR GL ++ + I YISCN ++ R Sbjct: 365 MK-----NWLKE----GIQPTAILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMAR 415 Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364 D+ + + ++++ D FP T H+EC LLV+ Sbjct: 416 DIKLYQELGYELKKVQPVDLFPQTHHVECVSLLVK 450 >gi|302557928|ref|ZP_07310270.1| tRNA (Uracil-5-)-methyltransferase [Streptomyces griseoflavus Tu4000] gi|302475546|gb|EFL38639.1| tRNA (Uracil-5-)-methyltransferase [Streptomyces griseoflavus Tu4000] Length = 449 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 61/206 (29%), Positives = 98/206 (47%), Gaps = 27/206 (13%) Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGN 222 R +V ER GRT +R F Q + ++ V+ +G++ L+LYCG G Sbjct: 257 RPFVRERAD--GRT--HRVAGGGFWQVHPKAADTLVTAVMQGLLPRKGEMALDLYCGVGL 312 Query: 223 FSLVLARHFDR---VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279 F+ LA VL +E K +VE AR+N+A + VR+ + + R Sbjct: 313 FAGALADRVGETGAVLGIESGKRAVEDARHNLA-----DFPRVRIEQGKVDSVLPR---- 363 Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSIL-S 336 + D+D+ + +DPPR+G TV + + I Y++C+P +L RDL+ Sbjct: 364 TGITDVDL-------VVLDPPRAGAGRKTVEHLSSLGARRIAYVACDPAALARDLAYFRD 416 Query: 337 TTHTIERLALFDQFPYTRHMECGVLL 362 + + L +FD FP T H+EC +L Sbjct: 417 GGYRVRTLRVFDLFPMTHHVECVAIL 442 >gi|302392787|ref|YP_003828607.1| RNA methyltransferase, TrmA family [Acetohalobium arabaticum DSM 5501] gi|302204864|gb|ADL13542.1| RNA methyltransferase, TrmA family [Acetohalobium arabaticum DSM 5501] Length = 456 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 44/155 (28%), Positives = 78/155 (50%), Gaps = 15/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G+ SL LA+ +V +E+ +++ A+ N N+++N + + Sbjct: 313 VVDAYCGIGSISLYLAQAAKQVYGIEVVSQAIDDAKENAELNNIDNC---------YFKV 363 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330 + + +LK + + I VDPPR G + + ++ P I+Y+SC P SL R Sbjct: 364 GKVRKILPKLKS---NGLNPEVIVVDPPRKGCHEEVLETFLELKPERIIYVSCKPSSLAR 420 Query: 331 DLSILSTT-HTIERLALFDQFPYTRHMECGVLLVR 364 DL L+ + +E + D FP T H+E +VR Sbjct: 421 DLEQLTAADYEVEEIQPVDMFPQTYHIEAVAKIVR 455 >gi|289167962|ref|YP_003446231.1| hypothetical protein smi_1119 [Streptococcus mitis B6] gi|288907529|emb|CBJ22366.1| conserved hypothetical protein [Streptococcus mitis B6] Length = 452 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 47/156 (30%), Positives = 78/156 (50%), Gaps = 15/156 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ Y G G L +A+H V VE+ +VE + N N+++N V +++ A Sbjct: 308 VIDAYSGIGTIGLSVAKHVKEVYGVEVIPEAVENSNKNAQLNNISNAHYVCDTAE---NA 364 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCR 330 M+ N LKD + I VDPPR GL ++ + I YISCN ++ R Sbjct: 365 MK-----NWLKD----GIQPTVILVDPPRKGLTESFIKASSQTGADRIAYISCNVATMAR 415 Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVRK 365 D+ + + ++++ D FP T H+EC LLV++ Sbjct: 416 DIKLYQELGYELKKVQPVDLFPQTHHVECVSLLVKR 451 >gi|262361371|gb|ACY58092.1| RNA methyltransferase [Yersinia pestis D106004] Length = 240 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 47/154 (30%), Positives = 72/154 (46%), Gaps = 18/154 (11%) Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271 + +L+CG G F L A ++ +EI ++ AR + + NV + S F Sbjct: 100 SMWDLFCGVGGFGLHCAGPETQLTGIEINAEAIACARQSAEQLGLKNVSFAALDSTRFAT 159 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLC 329 A + E + V+PPR G+ + Q P ILY SCN +++ Sbjct: 160 AEAQIPEL---------------VLVNPPRRGIGRELCDYLSQMAPKFILYSSCNAETMA 204 Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363 +D+S+L+ H IER+ LFD FP+T H E LL Sbjct: 205 KDISLLAGYH-IERVQLFDMFPHTSHYEVLTLLT 237 >gi|58336866|ref|YP_193451.1| RNA methyltransferase [Lactobacillus acidophilus NCFM] gi|227903424|ref|ZP_04021229.1| TrmA family tRNA (uracil-5-)-methyltransferase [Lactobacillus acidophilus ATCC 4796] gi|58254183|gb|AAV42420.1| RNA methyltransferase [Lactobacillus acidophilus NCFM] gi|227868744|gb|EEJ76165.1| TrmA family tRNA (uracil-5-)-methyltransferase [Lactobacillus acidophilus ATCC 4796] Length = 450 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 44/157 (28%), Positives = 74/157 (47%), Gaps = 19/157 (12%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ Y G G L +A+H V +E+ + +++ A+ N N ++N + ++E Sbjct: 305 VIDAYSGIGTIGLSVAKHVKAVRGIEVVRDAIKDAKDNAELNGIDNAEYYLGKAEEIMPR 364 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD----DATVGMVQAYPHILYISCNPDSL 328 ++ + +FVDPPR GL DATV I+YISCNP ++ Sbjct: 365 WAKQ------------GLKTDVVFVDPPRKGLTPEFIDATVKT--GPKKIVYISCNPATM 410 Query: 329 CRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364 RDL + + +R+ D FP T H+E +L R Sbjct: 411 IRDLQLFQEQGYEFDRIDPVDMFPQTPHVESVTVLER 447 >gi|33151692|ref|NP_873045.1| 23S rRNA (uracil-5-)-methyltransferase [Haemophilus ducreyi 35000HP] gi|50401523|sp|Q7VNM5|RUMB_HAEDU RecName: Full=Putative 23S rRNA (uracil-5-)-methyltransferase RumB; AltName: Full=23S rRNA(M-5-U747)-methyltransferase gi|33147913|gb|AAP95434.1| probable RNA methyltransferase gene fragment [Haemophilus ducreyi 35000HP] Length = 213 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 44/161 (27%), Positives = 77/161 (47%), Gaps = 23/161 (14%) Query: 213 LLELYCGNGNFSLVLARHFD------RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266 L +L+CG G F L A+ + +EI+ ++E+A + +NNV + + Sbjct: 68 LWDLFCGVGGFGLHCAKALQDQGKPVTLTGIEISAAAIESATQSAQKLALNNVTFASLDA 127 Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCN 324 +F R++ + + V+PPR G+ + P+++Y SCN Sbjct: 128 AQFALKDRQQTP--------------ELVIVNPPRRGIGKDLAEFLNQLNIPYLIYSSCN 173 Query: 325 PDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 +S+ +D + L T + + R+ LFD FP+T H E LL+RK Sbjct: 174 AESMVKDFAYL-THYQLHRVQLFDMFPHTTHYETVTLLIRK 213 >gi|172058513|ref|YP_001814973.1| RNA methyltransferase [Exiguobacterium sibiricum 255-15] gi|171991034|gb|ACB61956.1| RNA methyltransferase, TrmA family [Exiguobacterium sibiricum 255-15] Length = 454 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 46/162 (28%), Positives = 79/162 (48%), Gaps = 17/162 (10%) Query: 209 IQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266 + GD +++ YCG G+ SL LA+ V +E+ +++ AR N AN ++NV ++ Sbjct: 303 LTGDEIVVDAYCGIGSISLSLAQKAKHVYGIEMVPQAIDDARRNAKANGIDNVSFEYGTA 362 Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCN 324 + A+ + + I VDPPR G D+ + + P I+Y+SCN Sbjct: 363 ETVMPALVK------------GGIKPDVIVVDPPRKGCDEEFLRAAAEVAPKRIVYVSCN 410 Query: 325 PDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVRK 365 + RD +L+ + + + D FP+T H+E L VR+ Sbjct: 411 ASTQARDAKLLAELGYKLMEVTPVDMFPHTTHVESVALFVRE 452 >gi|288936340|ref|YP_003440399.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Klebsiella variicola At-22] gi|288891049|gb|ADC59367.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Klebsiella variicola At-22] Length = 375 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 55/187 (29%), Positives = 89/187 (47%), Gaps = 25/187 (13%) Query: 185 NSFTQPNAGINVHML----EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240 SF Q N + + +WV A +Q + +L+CG G F L A R+ +EIA Sbjct: 207 QSFFQTNPAVASRLYATARDWVRALP--VQ-HMWDLFCGVGGFGLHCATPAMRLTGIEIA 263 Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300 ++ AR + A ++N+ + S +F E + +L + V+PP Sbjct: 264 PEAIACARQSAAQLGLSNLHFQALDSTQFAT---HEDDIPQL------------VLVNPP 308 Query: 301 RSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMEC 358 R G+ + A P+I+Y SCN ++ D++ L + +ER+ LFD FP+T H E Sbjct: 309 RRGIGAELCDYLSRMAPPYIIYSSCNARTMATDIARLR-GYRVERVQLFDMFPHTAHYEV 367 Query: 359 GVLLVRK 365 LLVR+ Sbjct: 368 LTLLVRE 374 >gi|227514178|ref|ZP_03944227.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus fermentum ATCC 14931] gi|227087458|gb|EEI22770.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus fermentum ATCC 14931] Length = 474 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 90/355 (25%), Positives = 139/355 (39%), Gaps = 60/355 (16%) Query: 40 PIHYRMRAEFHI-WHDG---DDLY----HIMFDQQTKERMRIDYFMPGSL--------LI 83 P YR +A+F + DG LY H + D QT MPG++ LI Sbjct: 145 PYGYRNKAQFQVRMQDGHVVAGLYQADSHTVVDMQT-----CAVQMPGTMKVINTLVKLI 199 Query: 84 NALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVT-----LIYHRLLDDAWRECAIRL 138 L I + +++ + T Q AI+T + H LL + + Sbjct: 200 EELAIPVYNEANQSGIIKTLAVRESLATGQIQVAIITNTAKLIKKHALL--------VAI 251 Query: 139 RDALHARKYQIQLIGRAN-------KTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPN 191 D L +Q + + +T + +DY+ E L L +R SF Q N Sbjct: 252 EDQLPEVTSVVQNVNPGDTPLVWGDETTLLYGQDYITESLM----GLDFRLSARSFLQLN 307 Query: 192 AGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN 250 + E A + D L++ Y G G L LA +V+ +E +V+ A N Sbjct: 308 PEQTEVLYEEAAKALDLSKDDTLIDAYAGIGTIGLSLANRVKQVIGMETIADAVQDANNN 367 Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310 N V N + ++E R + + F + VDPPR+GLD+A + Sbjct: 368 ATLNGVTNARYEVGPAEELLPKWRSQGQ------------HFDALVVDPPRTGLDNALID 415 Query: 311 MV-QAYP-HILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363 + Q P Y+SCN +L R+L+ L T+ + + D P T E V LV Sbjct: 416 TILQEKPAKFAYVSCNMATLARNLARLVPTYRVAYIQPVDMLPQTPRCEAVVKLV 470 >gi|75909839|ref|YP_324135.1| 23S rRNA methyltransferase/RumA [Anabaena variabilis ATCC 29413] gi|75703564|gb|ABA23240.1| 23S rRNA m(5)U-1939 methyltransferase [Anabaena variabilis ATCC 29413] Length = 460 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 52/173 (30%), Positives = 84/173 (48%), Gaps = 21/173 (12%) Query: 202 VLAATKGIQG--DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259 V+ + +QG L++ YCG G +L L++ + + +E+ +V+ A N N +NNV Sbjct: 300 VIESQLNLQGHETLIDAYCGIGTLTLPLSKQVRQAIGLELQPEAVQQAIINAQHNGINNV 359 Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-H 317 EF Q E+ ++ I + +DPPR G D + ++ + P Sbjct: 360 --------EF-QVGAVEKLLPKMGIIP------DVVLLDPPRKGCDRIVIESLLASKPAR 404 Query: 318 ILYISCNPDSLCRDLSILST--THTIERLALFDQFPYTRHMECGVLLVRKPSG 368 I+Y+SC +L RDL +L +TI+R+ D FP T H+E LV SG Sbjct: 405 IVYVSCKVATLARDLKLLCADGIYTIQRIQSADFFPQTSHVEAAAFLVLSQSG 457 >gi|332358268|gb|EGJ36096.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis SK355] Length = 463 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 44/157 (28%), Positives = 70/157 (44%), Gaps = 14/157 (8%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L++ YCG G A+ + ++I ++E A+ N +N +++E Sbjct: 308 LIDAYCGGGTIGFAFAKKVKSLRGMDIIPEAIEDAKRNAKRMGFDNTLYEAGTAEEIIPR 367 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCR 330 E YR + VDPPR+GLDD + + Y ++Y+SCN +L R Sbjct: 368 WYAE------------GYRADALIVDPPRTGLDDKLLETIVRYAPEKMVYVSCNVSTLAR 415 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRKPS 367 DL LS + + + D FP+T E V L +K S Sbjct: 416 DLVKLSRVYDVHYIQSVDMFPHTARTEAVVKLSKKDS 452 >gi|224539551|ref|ZP_03680090.1| hypothetical protein BACCELL_04456 [Bacteroides cellulosilyticus DSM 14838] gi|224518832|gb|EEF87937.1| hypothetical protein BACCELL_04456 [Bacteroides cellulosilyticus DSM 14838] Length = 476 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 56/205 (27%), Positives = 94/205 (45%), Gaps = 28/205 (13%) Query: 172 TVAGRTLIYRQIEN--------SFTQPNA--GINVHMLEWVLAATKGIQGDLLELYCGNG 221 T G+ I+ ++E SF Q N+ N++ + A G + + +LY G G Sbjct: 280 TFKGKDHIFEEMEGLRFKIGPKSFYQTNSEQAYNLYKIARNFAGLTGKEL-VYDLYTGTG 338 Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE-FTQAMRREREFN 280 + +++ +V+ +E ++E A+ N N + N K+ TQ Sbjct: 339 TIANFVSKQARQVIGIEYVPEAIEDAKVNAEINGIKNTLFFAGDMKDMLTQDF------- 391 Query: 281 RLKDIDIHSY-RFKTIFVDPPRSGLDDATVGMVQ-AYPH-ILYISCNPDSLCRDLSILST 337 I+ Y R I DPPR+G+ V ++ A P I+Y+SCNP + RDL +L Sbjct: 392 ------INQYGRPDVIITDPPRAGMHQDVVDVILFAEPKRIVYVSCNPATQARDLQLLDV 445 Query: 338 THTIERLALFDQFPYTRHMECGVLL 362 + ++ + D FP+T H+E VLL Sbjct: 446 KYKVKAIQPVDMFPHTHHVENVVLL 470 >gi|309790365|ref|ZP_07684931.1| RNA methyltransferase, TrmA family [Oscillochloris trichoides DG6] gi|308227631|gb|EFO81293.1| RNA methyltransferase, TrmA family [Oscillochloris trichoides DG6] Length = 416 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 51/156 (32%), Positives = 80/156 (51%), Gaps = 19/156 (12%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 LL+ Y G G+F+L LA+ D V+AVE +V + N + NV+ VR ++ Sbjct: 277 LLDAYSGVGSFALPLAKGLDAVVAVEENPTAVADGVRCLPFNGITNVEFVRGAA------ 330 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCR 330 ER +L+ +F +DPPR G A + + A + YISC+P L R Sbjct: 331 ---ERVLPQLEG------QFDAAILDPPRRGCHPAVIEELARLAPTRLAYISCHPGILAR 381 Query: 331 DL-SILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 DL ++L + ++ + D FP T H+EC V+++RK Sbjct: 382 DLGAMLRIGYRLDLVQPIDLFPQTPHIEC-VVVLRK 416 >gi|282859473|ref|ZP_06268578.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella bivia JCVIHMP010] gi|282587701|gb|EFB92901.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella bivia JCVIHMP010] Length = 476 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 52/182 (28%), Positives = 86/182 (47%), Gaps = 18/182 (9%) Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDLL--ELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 SF Q N H+ + V + G+ L +LY G G + +A+ +V+ +E + Sbjct: 303 SFYQTNTEQAYHLYD-VARRFANLTGEELVYDLYTGTGTIANFVAKRAKKVIGIEYVPEA 361 Query: 244 VEAARYNIAANHVNNVKIVRMSSKE-FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302 +E A+ N N + N K+ T++ +E R I DPPR+ Sbjct: 362 IEDAKVNSEINKIQNTLFYAGDMKDILTESFVQEHG------------RPDVIITDPPRA 409 Query: 303 GLDDATVGMV-QAYPH-ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360 G+ V ++ A+P I+Y+SCNP + RDL++L + + + D FP+T H+E V Sbjct: 410 GMHPDVVNVILGAHPKRIVYVSCNPATQARDLALLDVDYKVVAVQPVDMFPHTPHVENVV 469 Query: 361 LL 362 LL Sbjct: 470 LL 471 >gi|160879502|ref|YP_001558470.1| RNA methyltransferase [Clostridium phytofermentans ISDg] gi|160428168|gb|ABX41731.1| RNA methyltransferase, TrmA family [Clostridium phytofermentans ISDg] Length = 463 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 51/155 (32%), Positives = 73/155 (47%), Gaps = 18/155 (11%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + +LY G G + +LA +V+ VEI +V AAR N + N + N EF Sbjct: 322 IFDLYSGTGTIAQLLAPVAKKVIGVEIVGEAVVAARENASLNKLTNC--------EFIAG 373 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCR 330 + LK ID + I +DPPR G+ + + Y ++YISC P SL R Sbjct: 374 -------DVLKVIDTIEEKPDLIVLDPPRDGIHPKALDKIIDYGVDRLVYISCKPSSLAR 426 Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364 DL +L + +E++ D FP T H E LL R Sbjct: 427 DLVVLQERGYWVEKVRCVDMFPCTVHTETVCLLNR 461 >gi|310658947|ref|YP_003936668.1| RNA methyltransferase [Clostridium sticklandii DSM 519] gi|308825725|emb|CBH21763.1| Uncharacterized RNA methyltransferase BCE_0363 [Clostridium sticklandii] Length = 475 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 44/151 (29%), Positives = 74/151 (49%), Gaps = 15/151 (9%) Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274 ++YCG G SL LA+ V +EI K ++E A+ N N++ N ++E + Sbjct: 328 DIYCGIGTISLFLAKKAKHVYGIEIVKEAIENAKKNAKRNNIENASFYAGKAEEVVPEL- 386 Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDL 332 ++R D+ + VDPPR G ++ + + I+YISCNP +L RD+ Sbjct: 387 ----YSRGITADV-------VVVDPPRKGCEEIVLDTIAKMNPKKIVYISCNPSTLARDV 435 Query: 333 SILST-THTIERLALFDQFPYTRHMECGVLL 362 LS + ++ D F +T H+E +L+ Sbjct: 436 ERLSKLGYEMDVAYPVDMFSHTMHVEAIILM 466 >gi|62185452|ref|YP_220237.1| putative RNA methyltransferase [Chlamydophila abortus S26/3] gi|62148519|emb|CAH64290.1| putative RNA methyltransferase [Chlamydophila abortus S26/3] Length = 401 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 49/195 (25%), Positives = 98/195 (50%), Gaps = 16/195 (8%) Query: 175 GRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDR 233 G + ++ SF QP ++E + + LL+LYCG G ++L+++ + Sbjct: 216 GNSAVFHVRPRSFFQPQTLQGAKIIEVAKEFMDPQRSETLLDLYCGAGTIGIMLSQYVKK 275 Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293 V+ VEI ++++A+ NI N ++ V + E + + + + D+ I Sbjct: 276 VIGVEIVPDAIDSAKENILINKKEHLMEVHL---EDVKTFCKRYQDHPSPDVAI------ 326 Query: 294 TIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPD-SLCRDLSILSTTHTIERLALFDQF 350 +DPPR G+ + + +++ P I+YISCNP S+++ + ++++ DQF Sbjct: 327 ---IDPPRCGIQNKVLKYLIRIAPRKIIYISCNPKIQFVECYSLIAAGYRMKKVQPLDQF 383 Query: 351 PYTRHMECGVLLVRK 365 P++ H+E +LL R+ Sbjct: 384 PHSPHLENIILLERE 398 >gi|309389832|gb|ADO77712.1| RNA methyltransferase, TrmA family [Halanaerobium praevalens DSM 2228] Length = 451 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 45/155 (29%), Positives = 75/155 (48%), Gaps = 15/155 (9%) Query: 210 QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269 + ++++ + G G+ + L+ ++ +E K +VE A+ N N +NN+ EF Sbjct: 306 EAEVIDAFSGTGSIGIYLSDKAKKIYGIESLKAAVEDAQKNAELNQINNI--------EF 357 Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDS 327 M + LK+ + +TI DPPR GL+ T+ ++ I+YISCNP + Sbjct: 358 KLGMVAAKLPVLLKE-----NKIETIIFDPPRKGLNQKTIELLLENELKKIIYISCNPAT 412 Query: 328 LCRDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362 RDL L + + + D FP T H+E LL Sbjct: 413 QARDLKKLKKKYQLVEIQPVDLFPQTYHIESVALL 447 >gi|34540828|ref|NP_905307.1| RNA methyltransferase [Porphyromonas gingivalis W83] gi|50401491|sp|Q7MVG9|Y1095_PORGI RecName: Full=Uncharacterized RNA methyltransferase PG_1095 gi|34397142|gb|AAQ66206.1| RNA methyltransferase, TrmA family [Porphyromonas gingivalis W83] Length = 465 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 59/208 (28%), Positives = 96/208 (46%), Gaps = 22/208 (10%) Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL--ELYCGNG 221 R+Y++E + L ++ SF Q N+ + L + G+ GD L +LY G G Sbjct: 272 REYIEEEM----EGLKFKIGAKSFYQTNSR-QAYQLYRIAREFAGLTGDELVYDLYTGTG 326 Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281 + +A RV+ +E ++E AR N N + N K+ +F Sbjct: 327 TIANFVAGQAHRVIGIEYVPEAIEDARTNSLLNGIENTLFYAGDMKDILT-----NDF-- 379 Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL--ST 337 I+ H R + DPPR+G+ ++ + + A I+Y+SCNP + RDL++L Sbjct: 380 ---IEQHG-RPDVVITDPPRAGMHESVIDAILFAAPRRIVYVSCNPATQARDLALLMADG 435 Query: 338 THTIERLALFDQFPYTRHMECGVLLVRK 365 + + D FP+T H+E VLLVR Sbjct: 436 RYRAVKSRPVDMFPHTHHVENVVLLVRN 463 >gi|319937203|ref|ZP_08011610.1| hypothetical protein HMPREF9488_02445 [Coprobacillus sp. 29_1] gi|319807569|gb|EFW04162.1| hypothetical protein HMPREF9488_02445 [Coprobacillus sp. 29_1] Length = 452 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 58/215 (26%), Positives = 101/215 (46%), Gaps = 20/215 (9%) Query: 155 ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDL 213 +K K+ Y+++ L IYR SF Q N H+ + + A ++ Sbjct: 251 GDKVKVIDGPGYIEDELLGN----IYRISVKSFYQVNPKQVEHLYQKAIEFADLKPTDEV 306 Query: 214 LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273 ++ YCG G SL +A++ +V VEI + ++ A+ N NHV+NV+ + EF Sbjct: 307 IDAYCGIGTISLSMAKYVKKVYGVEIVEQAIIDAKENAQRNHVSNVEFTCQDAGEFMVEF 366 Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCRD 331 +++ K ID+ + VDPPR G + +V P I+Y+SC+ + RD Sbjct: 367 AKQQ-----KHIDV-------VMVDPPRKGCSQVFLDQLVTLSPDKIIYVSCDVATQARD 414 Query: 332 LSILST-THTIERLALFDQFPYTRHMECGVLLVRK 365 ++ L + ++ D FP T ++E + L +K Sbjct: 415 IAYLQEHNYQVDICQPVDMFPQTHNIENIIRLSKK 449 >gi|290956885|ref|YP_003488067.1| tRNA methyltransferase [Streptomyces scabiei 87.22] gi|260646411|emb|CBG69507.1| putative tRNA methyltransferase [Streptomyces scabiei 87.22] Length = 433 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 58/190 (30%), Positives = 92/190 (48%), Gaps = 23/190 (12%) Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLA-RHFDR--VL 235 YR F Q + +++ V+ +GD+ L+LYCG G F+ LA R D+ VL Sbjct: 253 YRVGSGGFWQVHPKAADTLVKAVMQGLLPRKGDMALDLYCGVGLFAGALADRVGDKGAVL 312 Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295 +E K +VE AR+N+A VR+ + + R ++++D+ I Sbjct: 313 GIESGKRAVEDARHNLA-----GFDRVRIEQGKVEAVLPR----TGIEEVDL-------I 356 Query: 296 FVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPY 352 +DPPR+G TV + + I Y++C+P +L RDL + + L FD FP Sbjct: 357 VLDPPRAGAGKKTVQHMASLGARRIAYVACDPAALARDLGYFREGGYRVRMLRAFDLFPM 416 Query: 353 TRHMECGVLL 362 T H+EC +L Sbjct: 417 THHVECVAIL 426 >gi|110802049|ref|YP_699391.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium perfringens SM101] gi|110682550|gb|ABG85920.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium perfringens SM101] Length = 452 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 45/153 (29%), Positives = 73/153 (47%), Gaps = 18/153 (11%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + +LYCG G + A +V+ +E+ + + AA N N +NN + E + Sbjct: 311 VFDLYCGTGTIGQIAAGKASKVIGIELIEEAAMAANENAKLNGLNNCNFIAGDVAEVIKT 370 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330 ++ + + I +DPPRSG+ + V + P I+Y+SCNP +L Sbjct: 371 VKDKPDI---------------IILDPPRSGVHPKALDYVIKFNAPQIIYVSCNPKTLVT 415 Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMECGVLL 362 DL +L + + IE+ L D FP T H+E V L Sbjct: 416 DLKVLEAKGYEIEKTLLMDMFPNTPHVETVVKL 448 >gi|269977261|ref|ZP_06184234.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Mobiluncus mulieris 28-1] gi|269934564|gb|EEZ91125.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Mobiluncus mulieris 28-1] Length = 414 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 62/205 (30%), Positives = 90/205 (43%), Gaps = 16/205 (7%) Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSL 225 V E + V R YR +SF Q + ++ +LA I ++LELY G+G FS+ Sbjct: 219 VREVVRVGAREHTYRIFASSFWQTDYRAPAVLVGELLAGVGDISDFEVLELYAGSGLFSV 278 Query: 226 VLARHFD---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282 LA R+ VE +V++A YN+ V + R + F R Sbjct: 279 FLAEAVGAAGRLTTVEGDALAVKSAGYNLKHAGFVGVSVERAAVSA---------RFLRG 329 Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLSILS-TTH 339 D R + DPPRSGL G + + ISC+P S RDL L + Sbjct: 330 VDFGQRVSRGSLVVADPPRSGLGRDVAGAICGLEPDLVALISCDPVSCARDLEALRRGGY 389 Query: 340 TIERLALFDQFPYTRHMECGVLLVR 364 ++ +FD FPYT+H+E +L R Sbjct: 390 RLQSFRVFDLFPYTQHVEVLSVLGR 414 >gi|260662594|ref|ZP_05863489.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus fermentum 28-3-CHN] gi|260553285|gb|EEX26228.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus fermentum 28-3-CHN] Length = 474 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 90/355 (25%), Positives = 139/355 (39%), Gaps = 60/355 (16%) Query: 40 PIHYRMRAEFHI-WHDG---DDLY----HIMFDQQTKERMRIDYFMPGSL--------LI 83 P YR +A+F + DG LY H + D QT MPG++ LI Sbjct: 145 PYGYRNKAQFQVRMQDGHVVAGLYQANSHTVVDMQT-----CAVQMPGTMKVINTLVKLI 199 Query: 84 NALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVT-----LIYHRLLDDAWRECAIRL 138 L I + +++ + T Q AI+T + H LL + + Sbjct: 200 EELAIPVYNEANQSGIIKTLAVRESLATGQIQVAIITNTAKLIKKHALL--------VAI 251 Query: 139 RDALHARKYQIQLIGRAN-------KTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPN 191 D L +Q + + +T + +DY+ E L L +R SF Q N Sbjct: 252 EDQLPEVTSVVQNVNPGDTPLVWGDETTLLYGQDYITESLM----GLDFRLSARSFLQLN 307 Query: 192 AGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN 250 + E A + D L++ Y G G L LA +V+ +E +V+ A N Sbjct: 308 PEQTEVLYEEAAKALDLSKDDTLIDAYAGIGTIGLSLANRVKQVIGMETIADAVQDANNN 367 Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310 N V N + ++E R + + F + VDPPR+GLD+A + Sbjct: 368 ATLNGVTNARYEVGPAEELLPKWRSQGQ------------HFDALVVDPPRTGLDNALID 415 Query: 311 MV-QAYP-HILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363 + Q P Y+SCN +L R+L+ L T+ + + D P T E V LV Sbjct: 416 TILQEKPAKFAYVSCNMATLARNLARLVPTYRVAYIQPVDMLPQTPRCEAVVKLV 470 >gi|290510604|ref|ZP_06549974.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Klebsiella sp. 1_1_55] gi|289777320|gb|EFD85318.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Klebsiella sp. 1_1_55] Length = 375 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 55/187 (29%), Positives = 89/187 (47%), Gaps = 25/187 (13%) Query: 185 NSFTQPNAGINVHML----EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240 SF Q N + + +WV A +Q + +L+CG G F L A R+ +EIA Sbjct: 207 QSFFQTNPAVASRLYATARDWVRALP--VQ-HMWDLFCGVGGFGLHCATPAMRLTGIEIA 263 Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300 ++ AR + A ++N+ + S +F E + +L + V+PP Sbjct: 264 PEAIACARQSAAQLGLSNLHFQALDSTQFAT---HEDDIPQL------------VLVNPP 308 Query: 301 RSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMEC 358 R G+ + A P+I+Y SCN ++ D++ L + +ER+ LFD FP+T H E Sbjct: 309 RRGIGAELCDYLSRMAPPYIIYSSCNARTMATDIARLR-GYRVERVQLFDMFPHTAHYEV 367 Query: 359 GVLLVRK 365 LLVR+ Sbjct: 368 LTLLVRE 374 >gi|331085907|ref|ZP_08334990.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lachnospiraceae bacterium 9_1_43BFAA] gi|330406830|gb|EGG86335.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lachnospiraceae bacterium 9_1_43BFAA] Length = 458 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 63/232 (27%), Positives = 107/232 (46%), Gaps = 31/232 (13%) Query: 142 LHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEW 201 LH + + ++++TKI +DY E++ L ++ SF QPN+ E Sbjct: 247 LHILNDSLSDVVQSDETKILYGQDYFYEKIM----GLEFKITPFSFFQPNS----RGAEV 298 Query: 202 VLAATKGIQGDL-----LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV 256 + + + GD+ +L+ G G + VLA +V+ VEI + +VEAA+ N N + Sbjct: 299 LYSTVREYIGDIHDMTVYDLFSGTGTIAQVLAPVAKQVIGVEIIEEAVEAAKENAERNGL 358 Query: 257 NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY- 315 +N + + F L +I+ + I +DPPR G+ + + Y Sbjct: 359 HNCRFIAGDV------------FKVLDEIE---EKPDVIVLDPPRDGIHPKALPKILDYG 403 Query: 316 -PHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVRK 365 +I+YISC SL RDL ++ + + + DQF T H+E LL +K Sbjct: 404 VENIVYISCKATSLARDLEMIQARGYRVVKCTAVDQFCQTVHVETVCLLKKK 455 >gi|320158037|ref|YP_004190415.1| RNA methyltransferase, TrmA family [Vibrio vulnificus MO6-24/O] gi|319933349|gb|ADV88212.1| RNA methyltransferase, TrmA family [Vibrio vulnificus MO6-24/O] Length = 360 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 55/187 (29%), Positives = 96/187 (51%), Gaps = 25/187 (13%) Query: 185 NSFTQPNAGINVHML----EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240 SF Q N + + +WV A K Q + +L+CG G F+L A H ++V+ +EI Sbjct: 193 KSFFQTNPHVAAQLYATARDWV-AELKPRQ--MWDLFCGVGGFALHCAPHAEQVIGIEIE 249 Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300 + ++ +A+ + ++N++ + S ++QA + + I V+PP Sbjct: 250 EEAINSAKLSAQQLGIDNLRFSALDSAAYSQAQTQAADL---------------ILVNPP 294 Query: 301 RSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMEC 358 R GL A ++ A +++Y SCNP ++ +DL L ++ +ER FD FP+T H E Sbjct: 295 RRGLGQALSEQLEQLAPQYLIYSSCNPMTMQQDLVHLP-SYQVERAQWFDMFPHTDHAEV 353 Query: 359 GVLLVRK 365 +LLVR+ Sbjct: 354 MMLLVRQ 360 >gi|298481085|ref|ZP_06999279.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides sp. D22] gi|298272659|gb|EFI14226.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides sp. D22] Length = 472 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 56/201 (27%), Positives = 94/201 (46%), Gaps = 26/201 (12%) Query: 175 GRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGDLL--ELYCGNGNFS 224 G+ I+ ++E SF Q N+ + L + G+ G+ L +LY G G + Sbjct: 282 GKDHIFEEMEGLRFKVGPKSFYQTNSE-QAYNLYKIARNFAGLTGNELVYDLYTGTGTIA 340 Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE-FTQAMRREREFNRLK 283 ++R +V+ +E ++E A+ N N + N K+ TQ Sbjct: 341 NFVSRQARQVIGIEYVPEAIEDAKVNAEINDIKNAIFYAGDMKDMLTQDF---------- 390 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQ-AYPH-ILYISCNPDSLCRDLSILSTTHTI 341 I+ H R I DPPR+G+ + ++ A P I+Y+SCNP + RDL +L+ + + Sbjct: 391 -INQHG-RPDVIITDPPRAGMHQDVIDVILFAEPKRIVYVSCNPATQARDLQLLNEKYKV 448 Query: 342 ERLALFDQFPYTRHMECGVLL 362 + + D FP+T H+E VLL Sbjct: 449 KAVQPVDMFPHTHHVENVVLL 469 >gi|55820731|ref|YP_139173.1| TrmA family tRNA methyltransferase [Streptococcus thermophilus LMG 18311] gi|55736716|gb|AAV60358.1| tRNA methyltransferase, TrmA family [Streptococcus thermophilus LMG 18311] Length = 453 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 47/155 (30%), Positives = 74/155 (47%), Gaps = 15/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ Y G G L A+ V VE+ + +VE A+ N N + N V S++ A Sbjct: 308 VIDAYSGIGTIGLSFAKQVKEVYGVEVIETAVEDAKKNAERNGITNAHYVANSAE---NA 364 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330 M + + D+ I VDPPR GL ++ + V P I Y+SCNP ++ R Sbjct: 365 MAKWSQDGIKPDV---------IIVDPPRKGLTESFIKASVAMQPEKITYVSCNPATMAR 415 Query: 331 DLS-ILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D+ + ++++ D FP T H+EC LL R Sbjct: 416 DIKRYQELGYELKKVQPVDLFPQTHHIECVGLLTR 450 >gi|294631901|ref|ZP_06710461.1| tRNA (Uracil-5-)-methyltransferase [Streptomyces sp. e14] gi|292835234|gb|EFF93583.1| tRNA (Uracil-5-)-methyltransferase [Streptomyces sp. e14] Length = 451 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 62/206 (30%), Positives = 98/206 (47%), Gaps = 27/206 (13%) Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGN 222 R +V ER GRT +R F Q + +++ V+ +GD+ L+LYCG G Sbjct: 259 RPFVRERAD--GRT--HRVGAGGFWQVHPKAADTLVKAVMQGLLPRKGDMALDLYCGVGL 314 Query: 223 FSLVLARHFDR---VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279 F+ LA VL +E K +V+ AR+N+A + VR+ + + R Sbjct: 315 FAGALADRIGEKGAVLGIESGKRAVQDARHNLA-----DFPRVRIEQGKVESILPR---- 365 Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSIL-S 336 + ++D+ I +DPPR+G TV + A I Y++C+P +L RDL+ Sbjct: 366 TGITEVDL-------IVLDPPRAGAGRQTVAHLTSLAARRIAYVACDPAALARDLAYFRE 418 Query: 337 TTHTIERLALFDQFPYTRHMECGVLL 362 + + L FD FP T H+EC +L Sbjct: 419 GGYRVRTLRAFDLFPMTHHVECVAIL 444 >gi|94988772|ref|YP_596873.1| 23S rRNA m(5)U 1939 methyltransferase [Streptococcus pyogenes MGAS9429] gi|94542280|gb|ABF32329.1| 23S rRNA m(5)U 1939 methyltransferase [Streptococcus pyogenes MGAS9429] Length = 462 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 50/184 (27%), Positives = 86/184 (46%), Gaps = 16/184 (8%) Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 SF Q N + + + +A + + D+ ++ Y G G L A+ V VE+ + +V Sbjct: 291 SFYQVNTIMAEKLYQTAIAFSDLSKDDIVIDAYSGIGTIGLSFAKTVKAVYGVEVIEAAV 350 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 A+ N A N + N V +++ ++ + I VDPPR GL Sbjct: 351 RDAQQNAALNGITNAYFVADTAEHAMATWAKD------------GIKPSVILVDPPRKGL 398 Query: 305 DDATV-GMVQAYPH-ILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVL 361 ++ + V P I+YISCNP ++ RD+ + + ++ D FP T H+EC VL Sbjct: 399 TESFIQASVAMGPQKIIYISCNPATMARDIKRYQELGYKLTKVQPVDLFPQTHHVECVVL 458 Query: 362 LVRK 365 L+++ Sbjct: 459 LIKE 462 >gi|302496741|ref|XP_003010371.1| hypothetical protein ARB_03072 [Arthroderma benhamiae CBS 112371] gi|291173914|gb|EFE29731.1| hypothetical protein ARB_03072 [Arthroderma benhamiae CBS 112371] Length = 637 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 46/159 (28%), Positives = 76/159 (47%), Gaps = 20/159 (12%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 LL+ YCG+G F++VL+ F L +++A S++ AR N ++V N + Sbjct: 485 LLDAYCGSGLFTIVLSGTFRSSLGIDVAASSIKCARENAKLSNVPNTGFAAADAAAL--- 541 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330 KD+ + + + +DPPR G D + + AY +LY+SCN + R Sbjct: 542 ---------FKDVPYPADQ-TLLVIDPPRKGCDTNFLNQLLAYGPTRVLYVSCNVHTQAR 591 Query: 331 DLSIL-----STTHTIERLALFDQFPYTRHMECGVLLVR 364 D+ +L + IE + FD FP T H+E +L + Sbjct: 592 DVGVLVEGKNGVRYDIESIRGFDFFPQTSHVESVAVLTK 630 >gi|291457698|ref|ZP_06597088.1| putative TRAM domain protein [Bifidobacterium breve DSM 20213] gi|291380751|gb|EFE88269.1| putative TRAM domain protein [Bifidobacterium breve DSM 20213] Length = 419 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 57/208 (27%), Positives = 101/208 (48%), Gaps = 25/208 (12%) Query: 169 ERLTVAGRTLIYRQIENSF----TQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNF 223 E++T+ G+T YR N F Q + H++ V +G ++ +LY G+G F Sbjct: 225 EQVTINGKTFDYRVDANGFWQVHRQAPIALGTHVINQVNQQLQGAVAPVIWDLYSGSGLF 284 Query: 224 SLVLAR---HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 +L LA R+L+VE A+ +V+ A+ N+ A ++N+V R + + Sbjct: 285 TLPLATMTGERTRMLSVEGARVAVKNAQRNLRAMNLNDVDA-------------RAGDVS 331 Query: 281 R-LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSIL-S 336 R L+ + H + + +DPPR+G + A ++YI+C+P SL RD + L Sbjct: 332 RTLEHVPAHLAKPDIVVLDPPRAGARAKVCRQIAAAGASSVVYIACDPTSLARDTATLIG 391 Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVR 364 + ++ + FD +P T H+E + R Sbjct: 392 EGYELKDIRAFDIYPMTHHVETVAVFSR 419 >gi|281420423|ref|ZP_06251422.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella copri DSM 18205] gi|281405568|gb|EFB36248.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella copri DSM 18205] Length = 483 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 51/184 (27%), Positives = 81/184 (44%), Gaps = 16/184 (8%) Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDLL--ELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 SF Q N H L V + GD L +LY G G + +A +V+ +E + Sbjct: 312 SFYQTNTEQAYH-LYCVAREFANLTGDELVYDLYTGTGTIANFVAHKAKKVIGIEYVPEA 370 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 +E A+ N N++ N K+ D R I DPPR+G Sbjct: 371 IEDAKVNSQVNNIENTLFYAGDMKDIL-----------TNDFIAQHGRPDVIITDPPRAG 419 Query: 304 LDDATVGMV-QAYPH-ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVL 361 + + ++ A P I+Y+SCNP + RDL ++ + + + D FP+T H+E VL Sbjct: 420 MHPDVINVILNAAPKRIVYVSCNPATQARDLQLMDAEYKVAAVQPVDMFPHTPHVENVVL 479 Query: 362 LVRK 365 L ++ Sbjct: 480 LEKR 483 >gi|269213835|ref|ZP_06158206.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Neisseria cinerea ATCC 14685] gi|269145156|gb|EEZ71574.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Neisseria cinerea ATCC 14685] Length = 461 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 51/177 (28%), Positives = 82/177 (46%), Gaps = 15/177 (8%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 FTQ N N M+ + QG+ + +L+CG GNFSL +A+ V+ VE A+ Sbjct: 276 GDFTQINTDTNRLMVSRAIKMLDIRQGERVADLFCGLGNFSLPIAKSGASVVGVEGAENL 335 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 V AR N N +F A F+ ++ +F + +DPPRSG Sbjct: 336 VGRARQNARLNGCGG-------QTDFIAA----NLFDCTENTVASWGKFDKMLIDPPRSG 384 Query: 304 LDDATVGMVQAY--PHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHME 357 + + Y I+Y+SCNP +L RD +L + + ++ + + F +T H+E Sbjct: 385 AYEVVRSLKPPYLPKKIVYVSCNPSTLARDAGVLVEKGYILGQVGIMNMFAHTSHVE 441 >gi|326331786|ref|ZP_08198074.1| putative RNA methyltransferase [Nocardioidaceae bacterium Broad-1] gi|325950585|gb|EGD42637.1| putative RNA methyltransferase [Nocardioidaceae bacterium Broad-1] Length = 399 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 58/206 (28%), Positives = 92/206 (44%), Gaps = 26/206 (12%) Query: 169 ERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVL 227 E + V G + + F Q + G ++ VL+A + + G +L+LY G G FS L Sbjct: 210 ETVEVGGAKHSFEVAADGFWQVHPGAPTALVSAVLSALEPMPGQSVLDLYAGVGLFSAFL 269 Query: 228 ARHFD---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284 A RV+AVE +A V N+ +++ + + Sbjct: 270 ADEVGPSGRVVAVE--------GDQTASALSVGNLPGAEVTAGDVATVL----------- 310 Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMVQA-YPH-ILYISCNPDSLCRDLSILST-THTI 341 D+ F + +DPPR G A V V A P + Y++C+P +L RD++I + + + Sbjct: 311 ADLAEGPFDLVVLDPPREGARRAVVDAVVARSPQKVAYVACDPAALARDVAIFAEHGYRL 370 Query: 342 ERLALFDQFPYTRHMECGVLLVRKPS 367 L FD FP T H+EC LL + S Sbjct: 371 RTLRAFDLFPMTHHVECVALLTKAGS 396 >gi|332199324|gb|EGJ13401.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae GA47368] gi|332199924|gb|EGJ13998.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae GA47901] Length = 458 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 43/155 (27%), Positives = 70/155 (45%), Gaps = 14/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L++ YCG G A+ + ++I ++E A+ N +N +++E Sbjct: 308 LIDAYCGVGTIGFAFAKKVKTLRGMDIIPEAIEDAKRNAKRMGFDNTHYEAGTAEEIIPR 367 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330 +E YR + VDPPR+GLDD + + Y ++YISCN +L R Sbjct: 368 WYKE------------GYRADALIVDPPRTGLDDKLLDTILTYVPEKMVYISCNVSTLAR 415 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 DL L + + + D FP+T E V L++K Sbjct: 416 DLVRLVEVYDLHYIQSVDMFPHTARTEAVVKLIKK 450 >gi|238795809|ref|ZP_04639322.1| 23S rRNA (uracil-5-)-methyltransferase rumB [Yersinia mollaretii ATCC 43969] gi|238720272|gb|EEQ12075.1| 23S rRNA (uracil-5-)-methyltransferase rumB [Yersinia mollaretii ATCC 43969] Length = 401 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 48/154 (31%), Positives = 76/154 (49%), Gaps = 18/154 (11%) Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271 + +L+CG G F L A ++ +EI+ ++ AR + + NV + S F Sbjct: 261 SMWDLFCGVGGFGLHCAGPETQLTGIEISAEAIACARQSADQLGLKNVSFAALDSTRFAT 320 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLC 329 A E + +L + V+PPR G+ + Q P ILY SCN +++ Sbjct: 321 A---EAQVPQL------------VLVNPPRRGMGAELCDYLAQMAPEFILYSSCNAETMA 365 Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363 +D+S L T + IER+ LFD FP+T H E +LL+ Sbjct: 366 KDISRL-TGYRIERVQLFDLFPHTAHYEVLILLI 398 >gi|67469205|ref|XP_650594.1| RNA methyltransferase [Entamoeba histolytica HM-1:IMSS] gi|56467236|gb|EAL45208.1| RNA methyltransferase, putative [Entamoeba histolytica HM-1:IMSS] Length = 479 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 58/213 (27%), Positives = 103/213 (48%), Gaps = 22/213 (10%) Query: 156 NKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL- 214 +K + DY+ E L L ++ SF Q N+ + + V I+ D++ Sbjct: 280 DKMNVLYGNDYITEELL----GLHFKITPMSFFQTNSLGAEVLYQTVRDYITTIRCDIIF 335 Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274 +LYCG G + +L+ +++ VE+ + ++ AA+ N N + N EF +A Sbjct: 336 DLYCGTGTITQLLSPICKKIIGVELNQDAIRAAKLNAELNKLTNC--------EF-RAAD 386 Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDL 332 E ++L++ R + I +DPPR+G+ + + Y I+Y+SC P +L RDL Sbjct: 387 VNIELDQLQE-----NRPELIVLDPPRTGIHPNALSKIIKYGAQTIVYVSCMPTTLIRDL 441 Query: 333 SILS-TTHTIERLALFDQFPYTRHMECGVLLVR 364 +L + ++ + L D FP T H+E LL + Sbjct: 442 IVLEQNGYKVKNITLVDMFPNTPHVETVCLLKK 474 >gi|326473586|gb|EGD97595.1| tRNA(m5U54)methyltransferase [Trichophyton tonsurans CBS 112818] Length = 593 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 46/159 (28%), Positives = 76/159 (47%), Gaps = 20/159 (12%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 LL+ YCG+G F++VL+ F L +++A S++ AR N ++V N + Sbjct: 441 LLDAYCGSGLFTIVLSGTFRSSLGIDVAASSIKCARENAKLSNVPNTGFAAADAAAL--- 497 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330 KD+ + + + +DPPR G D + + AY +LY+SCN + R Sbjct: 498 ---------FKDVPYPADQ-TLLVIDPPRKGCDTNFLNQLLAYGPTRVLYVSCNVHTQAR 547 Query: 331 DLSIL-----STTHTIERLALFDQFPYTRHMECGVLLVR 364 D+ +L + IE + FD FP T H+E +L + Sbjct: 548 DVGVLVEGKNGVRYDIESIRGFDFFPQTSHVESVAVLTK 586 >gi|168494763|ref|ZP_02718906.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae CDC3059-06] gi|183575365|gb|EDT95893.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae CDC3059-06] Length = 458 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 43/155 (27%), Positives = 70/155 (45%), Gaps = 14/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L++ YCG G A+ + ++I ++E A+ N +N +++E Sbjct: 308 LIDAYCGVGTIGFAFAKKVKTLRGMDIIPEAIEDAKRNAKRMGFDNTHYEAGTAEEIIPR 367 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330 +E YR + VDPPR+GLDD + + Y ++YISCN +L R Sbjct: 368 WYKE------------GYRADALIVDPPRTGLDDKLLDTILTYVPEKMVYISCNVSTLAR 415 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 DL L + + + D FP+T E V L++K Sbjct: 416 DLVRLVEVYDLHYIQSVDMFPHTARTEAVVKLIKK 450 >gi|77164319|ref|YP_342844.1| 23S rRNA methyltransferase/RumA [Nitrosococcus oceani ATCC 19707] gi|91207806|sp|Q3JCY2|RUMA_NITOC RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|76882633|gb|ABA57314.1| 23S rRNA m(5)U-1939 methyltransferase [Nitrosococcus oceani ATCC 19707] Length = 447 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 65/226 (28%), Positives = 100/226 (44%), Gaps = 29/226 (12%) Query: 148 QIQLIGRANKTKICLDRDYVD--ERLTVAGRTLIYRQ--------IENSFTQPNAGINVH 197 Q+ G+A+K +I L + L AG L Y Q + FTQ N +N Sbjct: 224 QLVAFGQAHKLQIYLQGGGAETVRLLWPAGARLSYSQFGKLEMIFLPTDFTQVNREVNTK 283 Query: 198 MLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV 256 M+ VL + G+ +L+L+CG GNF+L LA V+ +E V A N N + Sbjct: 284 MVRRVLELLEIKSGERVLDLFCGIGNFTLPLAIAGAEVVGIEGNAGLVARAVANATHNRL 343 Query: 257 NNV--KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA 314 N ++ ++ E+T + F++ +DPPRSG A M + Sbjct: 344 ENAYFEMADLNGAEWTHYVWAREGFSK-------------ALLDPPRSGALLAVQQMSKL 390 Query: 315 -YPHILYISCNPDSLCRDLSILST--THTIERLALFDQFPYTRHME 357 I+Y+SCNP +L RD L + + + D FP+T H+E Sbjct: 391 RVQRIVYVSCNPATLARDAGELVNRQGYRLRYAGVIDMFPHTTHVE 436 >gi|22126722|ref|NP_670145.1| 23S rRNA methyluridine methyltransferase [Yersinia pestis KIM 10] gi|45441084|ref|NP_992623.1| 23S rRNA methyluridine methyltransferase [Yersinia pestis biovar Microtus str. 91001] gi|108806623|ref|YP_650539.1| 23S rRNA methyluridine methyltransferase [Yersinia pestis Antiqua] gi|108812805|ref|YP_648572.1| 23S rRNA methyluridine methyltransferase [Yersinia pestis Nepal516] gi|145599632|ref|YP_001163708.1| 23S rRNA methyluridine methyltransferase [Yersinia pestis Pestoides F] gi|149366685|ref|ZP_01888719.1| putative RNA methyltransferase [Yersinia pestis CA88-4125] gi|162419159|ref|YP_001606076.1| 23S rRNA methyluridine methyltransferase [Yersinia pestis Angola] gi|165924539|ref|ZP_02220371.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Yersinia pestis biovar Orientalis str. F1991016] gi|165936154|ref|ZP_02224723.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Yersinia pestis biovar Orientalis str. IP275] gi|166009879|ref|ZP_02230777.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Yersinia pestis biovar Antiqua str. E1979001] gi|166211303|ref|ZP_02237338.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Yersinia pestis biovar Antiqua str. B42003004] gi|167399932|ref|ZP_02305450.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167419571|ref|ZP_02311324.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167423862|ref|ZP_02315615.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167469043|ref|ZP_02333747.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Yersinia pestis FV-1] gi|218928486|ref|YP_002346361.1| 23S rRNA methyluridine methyltransferase [Yersinia pestis CO92] gi|229841295|ref|ZP_04461454.1| 23S rRNA m(5)U747 methyltransferase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229843398|ref|ZP_04463544.1| 23S rRNA m(5)U747 methyltransferase [Yersinia pestis biovar Orientalis str. India 195] gi|229895772|ref|ZP_04510942.1| 23S rRNA m(5)U747 methyltransferase [Yersinia pestis Pestoides A] gi|229903224|ref|ZP_04518337.1| 23S rRNA m(5)U747 methyltransferase [Yersinia pestis Nepal516] gi|270487015|ref|ZP_06204089.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Yersinia pestis KIM D27] gi|294503331|ref|YP_003567393.1| 23S rRNA (uracil-5-)-methyltransferase [Yersinia pestis Z176003] gi|20455400|sp|Q8ZGG1|RUMB_YERPE RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName: Full=23S rRNA(M-5-U747)-methyltransferase gi|122979761|sp|Q1CAC8|RUMB_YERPA RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName: Full=23S rRNA(M-5-U747)-methyltransferase gi|123073272|sp|Q1CGA8|RUMB_YERPN RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName: Full=23S rRNA(M-5-U747)-methyltransferase gi|167012650|sp|A4TN73|RUMB_YERPP RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName: Full=23S rRNA(M-5-U747)-methyltransferase gi|226725417|sp|A9R4V6|RUMB_YERPG RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName: Full=23S rRNA(M-5-U747)-methyltransferase gi|21959742|gb|AAM86396.1|AE013887_3 putative enzyme [Yersinia pestis KIM 10] gi|45435943|gb|AAS61500.1| putative RNA methyltransferase [Yersinia pestis biovar Microtus str. 91001] gi|108776453|gb|ABG18972.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Yersinia pestis Nepal516] gi|108778536|gb|ABG12594.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Yersinia pestis Antiqua] gi|115347097|emb|CAL19989.1| putative RNA methyltransferase [Yersinia pestis CO92] gi|145211328|gb|ABP40735.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Yersinia pestis Pestoides F] gi|149291059|gb|EDM41134.1| putative RNA methyltransferase [Yersinia pestis CA88-4125] gi|162351974|gb|ABX85922.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Yersinia pestis Angola] gi|165915768|gb|EDR34376.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Yersinia pestis biovar Orientalis str. IP275] gi|165923599|gb|EDR40731.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Yersinia pestis biovar Orientalis str. F1991016] gi|165991275|gb|EDR43576.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Yersinia pestis biovar Antiqua str. E1979001] gi|166207074|gb|EDR51554.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Yersinia pestis biovar Antiqua str. B42003004] gi|166962312|gb|EDR58333.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167050640|gb|EDR62048.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167056711|gb|EDR66474.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229678994|gb|EEO75097.1| 23S rRNA m(5)U747 methyltransferase [Yersinia pestis Nepal516] gi|229689745|gb|EEO81806.1| 23S rRNA m(5)U747 methyltransferase [Yersinia pestis biovar Orientalis str. India 195] gi|229697661|gb|EEO87708.1| 23S rRNA m(5)U747 methyltransferase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229700695|gb|EEO88724.1| 23S rRNA m(5)U747 methyltransferase [Yersinia pestis Pestoides A] gi|262365091|gb|ACY61648.1| 23S rRNA (uracil-5-)-methyltransferase [Yersinia pestis D182038] gi|270335519|gb|EFA46296.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Yersinia pestis KIM D27] gi|294353790|gb|ADE64131.1| 23S rRNA (uracil-5-)-methyltransferase [Yersinia pestis Z176003] gi|320015811|gb|ADV99382.1| tRNA uracil-5--methyltransferase [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 376 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 47/154 (30%), Positives = 72/154 (46%), Gaps = 18/154 (11%) Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271 + +L+CG G F L A ++ +EI ++ AR + + NV + S F Sbjct: 236 SMWDLFCGVGGFGLHCAGPETQLTGIEINAEAIACARQSAEQLGLKNVSFAALDSTRFAT 295 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLC 329 A + E + V+PPR G+ + Q P ILY SCN +++ Sbjct: 296 AEAQIPEL---------------VLVNPPRRGIGRELCDYLSQMAPKFILYSSCNAETMA 340 Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363 +D+S+L+ H IER+ LFD FP+T H E LL Sbjct: 341 KDISLLAGYH-IERVQLFDMFPHTSHYEVLTLLT 373 >gi|227523883|ref|ZP_03953932.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus hilgardii ATCC 8290] gi|227088903|gb|EEI24215.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus hilgardii ATCC 8290] Length = 472 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 94/391 (24%), Positives = 154/391 (39%), Gaps = 61/391 (15%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFR-------SEPIHYRMRAEFHIWHDGD----DL 58 Y +QL K D ++ + ++ + ++ +P HYR +A F I DG L Sbjct: 108 YPKQLEFKRDVIKDSLEKYKPAGYRKYKLLPTIGMDDPTHYRNKATFQIRSDGQKVIAGL 167 Query: 59 Y----HIMFDQQTK--------ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQ 106 Y H + D +T + MR M L I E A I ++RA Sbjct: 168 YKHRSHTVVDLKTSALQYPLTMKVMRAVVEMIDDLGIPVYDEEKNAGIIKTVVVRA---- 223 Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY 166 + +D+A VT I + R+ H + ++ N K L + Sbjct: 224 ----ATATDEAQVTFITQSKKLLKKHQLLERID---HDLPEVVSVMQNVNPGKTSLV--W 274 Query: 167 VDERLTVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATK-GIQGDLLELY 217 +E + +AG+ I + N +F Q N + + + A + + L++ Y Sbjct: 275 GEETIHLAGKDKITEVLNNLSFDLSARAFLQVNPEMTAVLYQEAFKALELSGKEKLVDAY 334 Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277 G G L +AR V ++ K +V+ A N N + N A+ Sbjct: 335 SGVGTIGLSVARQVREVRGMDTIKDAVDDANANAIKNGIVN-------------ALYEVG 381 Query: 278 EFNRLKDIDIHS-YRFKTIFVDPPRSGLDDATVGMV-QAYPH-ILYISCNPDSLCRDLSI 334 E +L + I + + VDPPR+GL D+ + + P +YISCNP +L RDL Sbjct: 382 EAEKLLPLWIEDVWNPTAMIVDPPRTGLADSLIDTILDITPKKFVYISCNPSTLARDLVK 441 Query: 335 LSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 L+ + +E + D P T EC V +K Sbjct: 442 LTRKYNVEYIQSVDLMPQTSRCECVVKFKKK 472 >gi|326480712|gb|EGE04722.1| tRNA (uracil-5-)-methyltransferase [Trichophyton equinum CBS 127.97] Length = 593 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 46/159 (28%), Positives = 76/159 (47%), Gaps = 20/159 (12%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 LL+ YCG+G F++VL+ F L +++A S++ AR N ++V N + Sbjct: 441 LLDAYCGSGLFTIVLSGTFRSSLGIDVAASSIKCARENAKLSNVPNTGFAAADAAAL--- 497 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330 KD+ + + + +DPPR G D + + AY +LY+SCN + R Sbjct: 498 ---------FKDVPYPADQ-TLLVIDPPRKGCDTNFLNQLLAYGPTRVLYVSCNVHTQAR 547 Query: 331 DLSIL-----STTHTIERLALFDQFPYTRHMECGVLLVR 364 D+ +L + IE + FD FP T H+E +L + Sbjct: 548 DVGVLVEGKNGVRYDIESIRGFDFFPQTSHVESVAVLTK 586 >gi|306827133|ref|ZP_07460425.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus pyogenes ATCC 10782] gi|304430686|gb|EFM33703.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus pyogenes ATCC 10782] Length = 462 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 49/184 (26%), Positives = 86/184 (46%), Gaps = 16/184 (8%) Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 SF Q N + + + +A + + D+ ++ Y G G L A+ V VE+ + +V Sbjct: 291 SFYQVNTVMAEKLYQTAIAFSDLSKDDIVIDAYSGIGTIGLSFAKTVKAVYGVEVIEAAV 350 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 A++N A N + N V +++ ++ + I VDPPR GL Sbjct: 351 RDAQHNAALNGITNAYFVADTAEHAMATWAKD------------GIKPSVILVDPPRKGL 398 Query: 305 DDATV-GMVQAYPH-ILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVL 361 ++ + V P I Y+SCNP ++ RD+ + + ++ D FP T H+EC VL Sbjct: 399 TESFIQASVAMGPQKITYVSCNPATMARDIKRYQELGYKLAKVQPVDLFPQTHHVECVVL 458 Query: 362 LVRK 365 L+++ Sbjct: 459 LIKE 462 >gi|288554996|ref|YP_003426931.1| RNA methyltransferase [Bacillus pseudofirmus OF4] gi|288546156|gb|ADC50039.1| RNA methyltransferase, TrmA family [Bacillus pseudofirmus OF4] Length = 459 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 47/167 (28%), Positives = 76/167 (45%), Gaps = 27/167 (16%) Query: 209 IQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266 ++GD +++ YCG G SL LA+ V VEI ++ A+ N N NV + Sbjct: 308 LKGDETVIDAYCGIGTISLFLAQKAKHVYGVEIVPEAISDAKKNAEINGFTNVDFAVGEA 367 Query: 267 KE-----FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHIL 319 + + Q +R + I VDPPR G D+ + + ++ Sbjct: 368 ENVMPWWYAQGIRPD-----------------VIVVDPPRKGCDEKLLETILNMKPKRVV 410 Query: 320 YISCNPDSLCRDLSILS-TTHTIERLALFDQFPYTRHMECGVLLVRK 365 Y+SCNP +L RDL +L + + + D FP++ H+E +VRK Sbjct: 411 YVSCNPATLARDLRVLEDGGYKTKEVQPVDMFPHSTHVEVVSQIVRK 457 >gi|242241735|ref|ZP_04796180.1| TrmA family RNA methyltransferase [Staphylococcus epidermidis W23144] gi|242234825|gb|EES37136.1| TrmA family RNA methyltransferase [Staphylococcus epidermidis W23144] Length = 472 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 55/218 (25%), Positives = 97/218 (44%), Gaps = 21/218 (9%) Query: 151 LIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ 210 ++GR + T +D ++++L+ +IY + SF Q N+ + + L + Sbjct: 270 IMGRQSMT--LYGKDKIEDQLS----EVIYHISDLSFYQINSSQTEKLYQQALNYAQLTG 323 Query: 211 GDL-LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269 ++ L+ YCG G L +A V VE+ +++ A N N + N +++ Sbjct: 324 KEIVLDTYCGIGTIGLYMAPLAKHVYGVEVVPQAIKDAEDNATKNQLKNTTFECGKAEDV 383 Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA-TVGMVQAYPH-ILYISCNPDS 327 + + + + VDPPR G D+ +++ P I+YISCNP + Sbjct: 384 ILTWKSQ------------GIKPDVVMVDPPRKGCDETFLTTLLKLNPKRIIYISCNPST 431 Query: 328 LCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 RD IL+ + + + D FP T H+E L VRK Sbjct: 432 QQRDAQILAEQYELVEITPVDMFPQTTHIETVALFVRK 469 >gi|254433797|ref|ZP_05047305.1| 23S rRNA (uracil-5-)-methyltransferase [Nitrosococcus oceani AFC27] gi|207090130|gb|EDZ67401.1| 23S rRNA (uracil-5-)-methyltransferase [Nitrosococcus oceani AFC27] Length = 447 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 65/226 (28%), Positives = 100/226 (44%), Gaps = 29/226 (12%) Query: 148 QIQLIGRANKTKICLDRDYVD--ERLTVAGRTLIYRQ--------IENSFTQPNAGINVH 197 Q+ G+A+K +I L + L AG L Y Q + FTQ N +N Sbjct: 224 QLVAFGQAHKLQIYLQGGGAETVRLLWPAGARLSYSQFGKLEMIFLPTDFTQVNREVNTK 283 Query: 198 MLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV 256 M+ VL + G+ +L+L+CG GNF+L LA V+ +E V A N N + Sbjct: 284 MVRRVLELLEIKSGERVLDLFCGIGNFTLPLAIAGAEVVGIEGNAGLVARAVANATHNRL 343 Query: 257 NNV--KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA 314 N ++ ++ E+T + F++ +DPPRSG A M + Sbjct: 344 ENAYFEMADLNGAEWTHYVWAREGFSK-------------ALLDPPRSGALLAVQQMSKL 390 Query: 315 -YPHILYISCNPDSLCRDLSILST--THTIERLALFDQFPYTRHME 357 I+Y+SCNP +L RD L + + + D FP+T H+E Sbjct: 391 RVQRIVYVSCNPATLARDAGELVNRQGYRLRYAGVIDMFPHTTHVE 436 >gi|218130910|ref|ZP_03459714.1| hypothetical protein BACEGG_02505 [Bacteroides eggerthii DSM 20697] gi|317476221|ref|ZP_07935472.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides eggerthii 1_2_48FAA] gi|217987254|gb|EEC53585.1| hypothetical protein BACEGG_02505 [Bacteroides eggerthii DSM 20697] gi|316907632|gb|EFV29335.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides eggerthii 1_2_48FAA] Length = 475 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 58/211 (27%), Positives = 98/211 (46%), Gaps = 29/211 (13%) Query: 172 TVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGDLL--ELYCGNG 221 T G+ I+ ++E SF Q N+ + L V G+ G+ L +LY G G Sbjct: 279 TFKGKDHIFEEMEGLRFKIGPKSFYQTNSE-QAYNLYKVARNFAGLTGNELVYDLYTGTG 337 Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE-FTQAMRREREFN 280 + +++ +V+ +E ++E A+ N N + N K+ TQ Sbjct: 338 TIANFVSKQARQVIGIEYVPEAIEDAKVNSEINGIQNTLFFAGDMKDMLTQDF------- 390 Query: 281 RLKDIDIHSY-RFKTIFVDPPRSGLDDATVGMVQ-AYPH-ILYISCNPDSLCRDLSILST 337 I+ Y R I DPPR+G+ + ++ A P I+Y+SCNP + RDL +L Sbjct: 391 ------INEYGRPDVIITDPPRAGMHQDVIDVILFAEPKRIVYVSCNPATQARDLQLLDA 444 Query: 338 THTIERLALFDQFPYTRHMECGVLL-VRKPS 367 + ++ + D FP+T H+E VLL ++ P+ Sbjct: 445 KYKVKAVQPVDMFPHTHHVENVVLLELKNPA 475 >gi|212709677|ref|ZP_03317805.1| hypothetical protein PROVALCAL_00725 [Providencia alcalifaciens DSM 30120] gi|212687488|gb|EEB47016.1| hypothetical protein PROVALCAL_00725 [Providencia alcalifaciens DSM 30120] Length = 375 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 52/168 (30%), Positives = 83/168 (49%), Gaps = 21/168 (12%) Query: 200 EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259 EWV A L +L+CG G F L A ++ +EI+ P++E AR + + +V Sbjct: 227 EWVKALNIT---SLWDLFCGVGGFGLHCADKTTKLTGIEISAPAIECARQSAQELGLQHV 283 Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD-DATVGMVQAYP-H 317 + + S F A R+ DI + V+PPR G+ + + +P + Sbjct: 284 EFQALDSTNF--ATSRD-------DIP------DLVLVNPPRRGIGKNLCTYLSDMHPEY 328 Query: 318 ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 ILY SCN ++ +D ++LS + + ++ LFD FP+T H E LL RK Sbjct: 329 ILYSSCNAQTMAQDFALLS-GYQVCKVQLFDMFPHTAHYEVLSLLKRK 375 >gi|210608457|ref|ZP_03287833.1| hypothetical protein CLONEX_00012 [Clostridium nexile DSM 1787] gi|210153033|gb|EEA84039.1| hypothetical protein CLONEX_00012 [Clostridium nexile DSM 1787] Length = 546 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 68/251 (27%), Positives = 114/251 (45%), Gaps = 45/251 (17%) Query: 138 LRDALHARKYQIQLIG-------------RANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 L DAL A + + +++G ++++T+I +D+ E+L + ++ Sbjct: 229 LVDALLALQLEGKIVGILHILNDSLSDVVQSDETRILYGQDFFYEKLL----DMDFKITP 284 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDL-----LELYCGNGNFSLVLARHFDRVLAVEI 239 SF QPN E + + GD+ +L+ G G + VLA +V+ VEI Sbjct: 285 FSFFQPNT----KGAEILYKTVRDYIGDIHNMTVFDLFSGTGTIAQVLAPVAKQVIGVEI 340 Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299 + +VEAA+ N N ++N + + F L +I+ + I +DP Sbjct: 341 VEEAVEAAKENAEHNGLSNCRFIAGDV------------FKVLDEIE---EKPDVIVLDP 385 Query: 300 PRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHM 356 PR G+ + + Y I+YISC SL RDL ++ + +E+ DQF T H+ Sbjct: 386 PRDGIHPKALPKILDYGVDKIVYISCKVTSLARDLEMIQARGYRVEKCTAVDQFCQTVHV 445 Query: 357 ECGVLLV-RKP 366 E VLL +KP Sbjct: 446 ETVVLLSQQKP 456 >gi|184154533|ref|YP_001842873.1| putative RNA methyltransferase [Lactobacillus fermentum IFO 3956] gi|183225877|dbj|BAG26393.1| putative RNA methyltransferase [Lactobacillus fermentum IFO 3956] Length = 535 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 90/355 (25%), Positives = 139/355 (39%), Gaps = 60/355 (16%) Query: 40 PIHYRMRAEFHI-WHDG---DDLY----HIMFDQQTKERMRIDYFMPGSL--------LI 83 P YR +A+F + DG LY H + D QT MPG++ LI Sbjct: 206 PYGYRNKAQFQVRMQDGHVVAGLYQTNSHTVVDMQT-----CAVQMPGTMKIINTLVKLI 260 Query: 84 NALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVT-----LIYHRLLDDAWRECAIRL 138 L I + +++ + T Q AI+T + H LL + + Sbjct: 261 EELAIPVYNEANQSGIIKTLAVRESLATGQIQVAIITNTAKLIKKHALL--------VAI 312 Query: 139 RDALHARKYQIQLIGRAN-------KTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPN 191 D L +Q + + +T + +DY+ E L L +R SF Q N Sbjct: 313 EDQLPEVTSVVQNVNPGDTPLVWGDETTLLYGQDYITESLM----GLDFRLSARSFLQLN 368 Query: 192 AGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN 250 + E A + D L++ Y G G L LA +V+ +E +V+ A N Sbjct: 369 PEQTEVLYEEAAKALDLSKDDTLIDAYAGIGTIGLSLANRVKQVIGMETIADAVQDANNN 428 Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310 N V N + ++E R + + F + VDPPR+GLD+A + Sbjct: 429 ATLNGVTNARYEVGPAEELLPKWRSQGQ------------HFDALVVDPPRTGLDNALID 476 Query: 311 MV-QAYP-HILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363 + Q P Y+SCN +L R+L+ L T+ + + D P T E V LV Sbjct: 477 TILQEKPAKFAYVSCNMATLARNLARLVPTYRVAYIQPVDMLPQTPRCEAVVKLV 531 >gi|28895748|ref|NP_802098.1| RNA methyltransferase [Streptococcus pyogenes SSI-1] gi|50914416|ref|YP_060388.1| 23S rRNA m(5)U 1939 methyltransferase [Streptococcus pyogenes MGAS10394] gi|50401597|sp|Q8K722|Y1024_STRP3 RecName: Full=Uncharacterized RNA methyltransferase SpyM3_1024/SPs0836 gi|73920489|sp|Q5XBK8|Y1070_STRP6 RecName: Full=Uncharacterized RNA methyltransferase M6_Spy1070 gi|28810997|dbj|BAC63931.1| putative RNA methyltransferase [Streptococcus pyogenes SSI-1] gi|50903490|gb|AAT87205.1| 23S rRNA m(5)U 1939 methyltransferase [Streptococcus pyogenes MGAS10394] Length = 462 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 49/184 (26%), Positives = 86/184 (46%), Gaps = 16/184 (8%) Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 SF Q N + + + +A + + D+ ++ Y G G L A+ V VE+ + +V Sbjct: 291 SFYQVNTVMAEKLYQTAIAFSDLSKDDIVIDAYSGIGTIGLSFAKTVKAVYGVEVIEAAV 350 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 A++N A N + N V +++ ++ + I VDPPR GL Sbjct: 351 RDAQHNAALNGITNAYFVADTAEHAMATWAKD------------GIKPSVILVDPPRKGL 398 Query: 305 DDATV-GMVQAYPH-ILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVL 361 ++ + V P I Y+SCNP ++ RD+ + + ++ D FP T H+EC VL Sbjct: 399 TESFIQASVAMGPQKITYVSCNPATMARDIKRYQELGYKLAKVQPVDLFPQTHHVECVVL 458 Query: 362 LVRK 365 L+++ Sbjct: 459 LIKE 462 >gi|238794845|ref|ZP_04638445.1| 23S rRNA (uracil-5-)-methyltransferase rumB [Yersinia intermedia ATCC 29909] gi|238725788|gb|EEQ17342.1| 23S rRNA (uracil-5-)-methyltransferase rumB [Yersinia intermedia ATCC 29909] Length = 375 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 48/154 (31%), Positives = 75/154 (48%), Gaps = 18/154 (11%) Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271 + +L+CG G F L A ++ +EI+ ++ AR + + NV + S F Sbjct: 236 SMWDLFCGVGGFGLHCASAETQLTGIEISAEAIACARQSAQQLGLQNVSFAALDSTCFAT 295 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLC 329 A E + +L + V+PPR G+ + Q P ILY SCN ++ Sbjct: 296 A---ETQVPQL------------VLVNPPRRGIGAELCDYLAQMAPEFILYSSCNAQTMA 340 Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363 +D+S+L+ + IER+ LFD FP+T H E VLL Sbjct: 341 KDISLLAD-YRIERVQLFDMFPHTAHYEVLVLLT 373 >gi|229825365|ref|ZP_04451434.1| hypothetical protein GCWU000182_00719 [Abiotrophia defectiva ATCC 49176] gi|229790737|gb|EEP26851.1| hypothetical protein GCWU000182_00719 [Abiotrophia defectiva ATCC 49176] Length = 514 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 56/216 (25%), Positives = 101/216 (46%), Gaps = 25/216 (11%) Query: 154 RANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNA-GINVHMLEWVLAATKGIQGD 212 +A + +I RDY++E L L ++ SF Q N+ G V + V +G+ Sbjct: 293 KAERQEILFGRDYINEELL----GLKFKITTFSFFQTNSLGAEV-LYSKVREYVGNNEGN 347 Query: 213 LL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271 ++ +LY G G +++ +V+ +EI + +V AA N N + N + + + Sbjct: 348 VVYDLYSGTGTIGQIISPVAKKVIGIEIVEEAVIAANENAKLNGLTNTEFLAGDVFKVLD 407 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLC 329 ++ + +F I +DPPR G+ + V +Y I+YI+C P SL Sbjct: 408 EVKEKPDF---------------IILDPPRDGVSPKALKRVLSYGVRDIVYIACKPTSLV 452 Query: 330 RDL-SILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 RD+ + + ++++ L D FP T H+E LL + Sbjct: 453 RDIPEFEAVGYRVKKVCLCDMFPETLHVETVCLLSK 488 >gi|227892264|ref|ZP_04010069.1| tRNA (uracil-5-) -methyltransferase [Lactobacillus salivarius ATCC 11741] gi|227865905|gb|EEJ73326.1| tRNA (uracil-5-) -methyltransferase [Lactobacillus salivarius ATCC 11741] Length = 456 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 43/154 (27%), Positives = 78/154 (50%), Gaps = 16/154 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G SL +A+ +V VEI ++E A++N + N ++N+ ++ + + Sbjct: 312 VIDAYCGIGTISLNMAKFAKKVYGVEIVPEAIEDAKHNASLNDLDNLDFEVGEAEVWMEK 371 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCR 330 +++ + I VDPPR GL + + V P I+Y+SCNP +L R Sbjct: 372 WQKQ------------GIKPDVIMVDPPRKGLTSSLIQSAVAMEPKKIVYVSCNPATLVR 419 Query: 331 DL-SILSTTHTIER-LALFDQFPYTRHMECGVLL 362 D+ + + + + + DQFP T H+E +L Sbjct: 420 DIQEFMELGYQVTKPIQPVDQFPQTTHVESVTVL 453 >gi|221232637|ref|YP_002511791.1| RNA methyltransferase [Streptococcus pneumoniae ATCC 700669] gi|307128099|ref|YP_003880130.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae 670-6B] gi|220675099|emb|CAR69679.1| putative RNA methyltransferase [Streptococcus pneumoniae ATCC 700669] gi|301794862|emb|CBW37321.1| putative RNA methyltransferase [Streptococcus pneumoniae INV104] gi|301800678|emb|CBW33323.1| putative RNA methyltransferase [Streptococcus pneumoniae OXC141] gi|301802595|emb|CBW35356.1| putative RNA methyltransferase [Streptococcus pneumoniae INV200] gi|306485161|gb|ADM92030.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae 670-6B] Length = 447 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 43/155 (27%), Positives = 70/155 (45%), Gaps = 14/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L++ YCG G A+ + ++I ++E A+ N +N +++E Sbjct: 304 LIDAYCGVGTIGFAFAKKVKTLRGMDIIPEAIEDAKRNAKRMGFDNTHYEAGTAEEIIPR 363 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330 +E YR + VDPPR+GLDD + + Y ++YISCN +L R Sbjct: 364 WYKE------------GYRADALIVDPPRTGLDDKLLDTILTYVPEKMVYISCNVSTLAR 411 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 DL L + + + D FP+T E V L++K Sbjct: 412 DLVRLVEVYDLHYIQSVDMFPHTARTEAVVKLIKK 446 >gi|149012517|ref|ZP_01833548.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae SP19-BS75] gi|147763573|gb|EDK70509.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae SP19-BS75] Length = 453 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 43/155 (27%), Positives = 70/155 (45%), Gaps = 14/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L++ YCG G A+ + ++I ++E A+ N +N +++E Sbjct: 308 LIDAYCGVGTIGFAFAKKVKTLRGMDIIPEAIEDAKRNAKRMGFDNTHYEAGTAEEIIPR 367 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330 +E YR + VDPPR+GLDD + + Y ++YISCN +L R Sbjct: 368 WYKE------------GYRADALIVDPPRTGLDDKLLDTILTYVPEKMVYISCNVSTLAR 415 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 DL L + + + D FP+T E V L++K Sbjct: 416 DLVRLVEVYDLHYIQSVDMFPHTARTEAVVKLIKK 450 >gi|327389062|gb|EGE87408.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae GA04375] Length = 374 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 42/155 (27%), Positives = 70/155 (45%), Gaps = 14/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L++ YCG G A+ + ++I ++E A+ N +N +++E Sbjct: 224 LIDAYCGVGTIGFAFAKKVKTLRGMDIIPEAIEDAKRNAKRMGFDNTHYEAGTAEEIIPR 283 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330 +E YR + +DPPR+GLDD + + Y ++YISCN +L R Sbjct: 284 WYKE------------GYRADALIIDPPRTGLDDKLLDTILTYVPEKMVYISCNVSTLAR 331 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 DL L + + + D FP+T E V L++K Sbjct: 332 DLVRLVEVYDLHYIQSVDMFPHTARTEAVVKLIKK 366 >gi|89896511|ref|YP_519998.1| hypothetical protein DSY3765 [Desulfitobacterium hafniense Y51] gi|89335959|dbj|BAE85554.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 446 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 48/169 (28%), Positives = 84/169 (49%), Gaps = 21/169 (12%) Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVN 257 +L+W +T+ + + +LYCG G +L LA +V +E +VE AR N N VN Sbjct: 289 VLDWAELSTEKV---VWDLYCGIGTITLALAAKAKKVWGIEENPYAVEDARENAKRNRVN 345 Query: 258 NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP 316 NV+ + + E F ++ D + +DPPR+G + G+++ P Sbjct: 346 NVEFM---------VGKAEDTFQQIGDSP------HIVVLDPPRAGAHRKVLEGLLELKP 390 Query: 317 -HILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLV 363 I+Y+SC+ +L RDL IL + + + + D FP+T +E +++ Sbjct: 391 EQIIYVSCDAGTLARDLGILQNGGYRVVEVQPVDMFPWTVSVESVIMMT 439 >gi|116618671|ref|YP_819042.1| tRNA (uracil-5-)-methyltransferase related enzyme [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116097518|gb|ABJ62669.1| tRNA (uracil-5-)-methyltransferase related enzyme [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 464 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 53/181 (29%), Positives = 82/181 (45%), Gaps = 21/181 (11%) Query: 185 NSFTQPNAGINVHMLEWVLAATKG---IQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241 NSF Q N + + LAA K +++ Y G G +L +A ++ V++ + Sbjct: 289 NSFYQVNPQTTSTL--YALAAEKANLKPTDVVVDAYSGIGTITLSVADKVKKIYGVDVVE 346 Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301 ++E A N N + N + V + E + + D + +FVDPPR Sbjct: 347 GAIEDAEKNAKNNQITNAEFVLADAPE---------QMAKWAD---EGLKPNVVFVDPPR 394 Query: 302 SGLDDATVGMVQAY--PHILYISCNPDSLCRD-LSILSTTHTIE-RLALFDQFPYTRHME 357 GL + V+A +YISCNP +L RD + IL+ IE + DQFP T H+E Sbjct: 395 KGLTQELIDAVKAMNPEKFVYISCNPATLARDAVQILAAGFEIEGAVQPLDQFPQTTHVE 454 Query: 358 C 358 Sbjct: 455 S 455 >gi|294636993|ref|ZP_06715315.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Edwardsiella tarda ATCC 23685] gi|291089821|gb|EFE22382.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Edwardsiella tarda ATCC 23685] Length = 355 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 54/187 (28%), Positives = 86/187 (45%), Gaps = 25/187 (13%) Query: 185 NSFTQPNAGINVHML----EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240 SF Q N + + +WV A G+ + +L+CG G F L A + +EI+ Sbjct: 184 QSFFQTNPAVAEALYAEARDWVRAL--GVTA-MWDLFCGVGGFGLHCATPEMALTGIEIS 240 Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300 ++ AR + A + V + S F D H + + V+PP Sbjct: 241 AEAIACARRSAARLGLEKVSFAALDSTAFA---------------DEHGQAPQLVLVNPP 285 Query: 301 RSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMEC 358 R G+ A ++ A P+ILY SCN S+ +D++ L + + I ++ LFD FP+T H E Sbjct: 286 RRGIGVALCDDLRRMAPPYILYSSCNAQSMAQDIACLES-YRIAKIRLFDMFPHTAHYEV 344 Query: 359 GVLLVRK 365 LLV + Sbjct: 345 LTLLVHQ 351 >gi|284054213|ref|ZP_06384423.1| 23S rRNA methyltransferase/RumA [Arthrospira platensis str. Paraca] gi|291569930|dbj|BAI92202.1| probable RNA methyltransferase [Arthrospira platensis NIES-39] Length = 461 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 57/203 (28%), Positives = 92/203 (45%), Gaps = 36/203 (17%) Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKG---IQGD--LLELYCGNGNFSLVLARHFD 232 L +R ++F Q +N E +L+A +QG L++ YCG G F+L LA+ Sbjct: 275 LKFRLTADTFFQ----VNTEAAESLLSAISSELNLQGHEILVDAYCGIGTFTLPLAKQLG 330 Query: 233 --------RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284 RV+ +E +VE A N N +N+V+ S K+ + Sbjct: 331 QNFPPKEIRVIGLESQAGAVEQAISNADLNDINHVQFRVGSVKQLLPKI----------- 379 Query: 285 IDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCRDLSIL--STTHT 340 ++ + +DPPR G D + ++ P I+YISC P +L RDL +L + + Sbjct: 380 ----PFKPDIVVLDPPRQGCDRTVIQTLLNLQPQRIVYISCRPVTLARDLQLLCENGIYQ 435 Query: 341 IERLALFDQFPYTRHMECGVLLV 363 + ++ D FP T H+EC L Sbjct: 436 LTKVQPVDFFPQTSHVECAAFLT 458 >gi|88802991|ref|ZP_01118518.1| tRNA (uracil-5-) -methyltransferase [Polaribacter irgensii 23-P] gi|88781849|gb|EAR13027.1| tRNA (uracil-5-) -methyltransferase [Polaribacter irgensii 23-P] Length = 485 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 45/173 (26%), Positives = 85/173 (49%), Gaps = 18/173 (10%) Query: 198 MLEWVLA-ATKGIQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAAN 254 ++E+VL TK +++L+CG G ++A +++ V+I ++E A N N Sbjct: 323 VVEYVLEDKTKVDNTVVMDLFCGTGTIGQIVASKSKNAQIIGVDIVASAIEDAEKNAKRN 382 Query: 255 HVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-- 312 ++ V+ +F + + + KTI +DP R+G+ T+ + Sbjct: 383 NITGVQFFAADVGKFLTSHPE------------YENKIKTIILDPARAGIAPKTLQKIIN 430 Query: 313 QAYPHILYISCNPDSLCRDLSILSTT-HTIERLALFDQFPYTRHMECGVLLVR 364 ++Y+SCNP + RD +L + I++++L DQFP+T H+E VL + Sbjct: 431 LNADRMVYVSCNPATQARDTELLGAAGYVIKKMSLVDQFPHTAHIETVVLFEK 483 >gi|332071986|gb|EGI82473.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae GA17570] Length = 462 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 43/155 (27%), Positives = 70/155 (45%), Gaps = 14/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L++ YCG G A+ + ++I ++E A+ N +N +++E Sbjct: 308 LIDAYCGVGTIGFAFAKKVKTLRGMDIIPEAIEDAKRNAKRMGFDNTHYEAGTAEEIIPR 367 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330 +E YR + VDPPR+GLDD + + Y ++YISCN +L R Sbjct: 368 WYKE------------GYRADALIVDPPRTGLDDKLLDTILTYVPEKMVYISCNVSTLAR 415 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 DL L + + + D FP+T E V L++K Sbjct: 416 DLVRLVEVYDLHYIQSVDMFPHTARTEAVVKLIKK 450 >gi|329769977|ref|ZP_08261374.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Gemella sanguinis M325] gi|328837537|gb|EGF87164.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Gemella sanguinis M325] Length = 452 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 42/154 (27%), Positives = 69/154 (44%), Gaps = 13/154 (8%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +L+ +CG G ++ V V+I +++ A N+ N++ N V + + Sbjct: 311 VLDAFCGVGTIGQYVSSKCKEVYGVDIVSDAIKDANDNVKLNNLTNCTYVAGDANKIVPR 370 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA-YPHILYISCNPDSLCRD 331 +++ F VDPPR GL ++ I+Y+SCNP +L RD Sbjct: 371 WKKK------------GINFDVAIVDPPRVGLGHLAKNLLNVDAKKIVYVSCNPSTLARD 418 Query: 332 LSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 L +L+ + I R+ D FP T +E V L RK Sbjct: 419 LKVLTRKYKIRRIQPVDMFPGTAAVEAVVELTRK 452 >gi|327474823|gb|EGF20228.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis SK408] Length = 469 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 48/155 (30%), Positives = 75/155 (48%), Gaps = 15/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +L+ Y G G L +A+ +V VE+ +VE +R N N + N V ++E Q Sbjct: 321 VLDAYSGIGTIGLSVAKQVKQVYGVEVIPEAVENSRKNAEINDITNASYVCAPAEEAIQ- 379 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCR 330 N LK+ + I VDPPR GL ++ + + P I YISCN ++ R Sbjct: 380 -------NWLKE----GIQADVILVDPPRKGLTESFIKASISMEPKKITYISCNVATMAR 428 Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364 D+ + + ++++ D FP T H+E LLVR Sbjct: 429 DIKLYQELGYELKKVQPVDLFPQTHHVEAVSLLVR 463 >gi|168490112|ref|ZP_02714311.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae SP195] gi|183571510|gb|EDT92038.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae SP195] Length = 451 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 43/155 (27%), Positives = 70/155 (45%), Gaps = 14/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L++ YCG G A+ + ++I ++E A+ N +N +++E Sbjct: 308 LIDAYCGVGTIGFAFAKKVKTLRGMDIIPEAIEDAKRNAKRMGFDNTHYEAGTAEEIIPR 367 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330 +E YR + VDPPR+GLDD + + Y ++YISCN +L R Sbjct: 368 WYKE------------GYRADALIVDPPRTGLDDKLLDTILTYVPEKMVYISCNVSTLAR 415 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 DL L + + + D FP+T E V L++K Sbjct: 416 DLVRLVEVYDLHYIQSVDMFPHTARTEAVVKLIKK 450 >gi|116327717|ref|YP_797437.1| RNA methyltransferase [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116331622|ref|YP_801340.1| RNA methyltransferase [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116120461|gb|ABJ78504.1| RNA methyltransferase [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116125311|gb|ABJ76582.1| RNA methyltransferase [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 454 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 50/195 (25%), Positives = 94/195 (48%), Gaps = 11/195 (5%) Query: 173 VAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD 232 V+G+ +R +SF QPN +L+++ L++L+CG+G FS + A F Sbjct: 265 VSGKE--FRVPFDSFFQPNPEGFQPILDFIEKEIPKPSDHLIDLFCGSGFFSRIFAHKFR 322 Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292 ++ ++ + S+E A ++ + ++ + F++ + F++L +I + S Sbjct: 323 KITGIDSIESSLEIAHKQMSFD-FPEIEFSYLREDLFSK-----KSFSQL-NILLQSREK 375 Query: 293 KTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQF 350 + DPPR+GL + ++ Y+SCNP S DL L I+++ + D + Sbjct: 376 NILIADPPRAGLGEFVTEALKNSKISSFFYVSCNPTSQKEDLRKLKDFFQIQKILITDPY 435 Query: 351 PYTRHMECGVLLVRK 365 P T H+E LL K Sbjct: 436 PQTPHLESVALLSSK 450 >gi|149004435|ref|ZP_01829170.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae SP14-BS69] gi|147757625|gb|EDK64644.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae SP14-BS69] Length = 455 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 43/155 (27%), Positives = 70/155 (45%), Gaps = 14/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L++ YCG G A+ + ++I ++E A+ N +N +++E Sbjct: 308 LIDAYCGVGTIGFAFAKKVKTLRGMDIIPEAIEDAKRNAKRMGFDNTHYEAGTAEEIIPR 367 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330 +E YR + VDPPR+GLDD + + Y ++YISCN +L R Sbjct: 368 WYKE------------GYRADALIVDPPRTGLDDKLLDTILTYVPEKMVYISCNVSTLAR 415 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 DL L + + + D FP+T E V L++K Sbjct: 416 DLVRLVEVYDLHYIQSVDMFPHTARTEAVVKLIKK 450 >gi|15903759|ref|NP_359309.1| hypothetical protein spr1717 [Streptococcus pneumoniae R6] gi|116516423|ref|YP_817130.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae D39] gi|148993227|ref|ZP_01822793.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae SP9-BS68] gi|149007378|ref|ZP_01831021.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae SP18-BS74] gi|149023453|ref|ZP_01836042.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae SP23-BS72] gi|168484910|ref|ZP_02709855.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae CDC1873-00] gi|168576690|ref|ZP_02722556.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae MLV-016] gi|225855340|ref|YP_002736852.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae JJA] gi|237650428|ref|ZP_04524680.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae CCRI 1974] gi|237822275|ref|ZP_04598120.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae CCRI 1974M2] gi|307068518|ref|YP_003877484.1| SAM-dependent methyltransferase [Streptococcus pneumoniae AP200] gi|50401572|sp|Q8DNH6|Y1717_STRR6 RecName: Full=Uncharacterized RNA methyltransferase spr1717 gi|50401780|sp|Q97NV8|Y1901_STRPN RecName: Full=Uncharacterized RNA methyltransferase SP_1901 gi|15459395|gb|AAL00520.1| Conserved hypothetical protein [Streptococcus pneumoniae R6] gi|116076999|gb|ABJ54719.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae D39] gi|147760950|gb|EDK67919.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae SP18-BS74] gi|147928201|gb|EDK79219.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae SP9-BS68] gi|147929776|gb|EDK80766.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae SP23-BS72] gi|172041937|gb|EDT49983.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae CDC1873-00] gi|183577662|gb|EDT98190.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae MLV-016] gi|225723744|gb|ACO19597.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae JJA] gi|306410055|gb|ADM85482.1| SAM-dependent methyltransferase [Streptococcus pneumoniae AP200] gi|332072242|gb|EGI82726.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae GA41301] Length = 451 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 43/155 (27%), Positives = 70/155 (45%), Gaps = 14/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L++ YCG G A+ + ++I ++E A+ N +N +++E Sbjct: 308 LIDAYCGVGTIGFAFAKKVKTLRGMDIIPEAIEDAKRNAKRMGFDNTHYEAGTAEEIIPR 367 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330 +E YR + VDPPR+GLDD + + Y ++YISCN +L R Sbjct: 368 WYKE------------GYRADALIVDPPRTGLDDKLLDTILTYVPEKMVYISCNVSTLAR 415 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 DL L + + + D FP+T E V L++K Sbjct: 416 DLVRLVEVYDLHYIQSVDMFPHTARTEAVVKLIKK 450 >gi|315174955|gb|EFU18972.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX1346] Length = 456 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 82/385 (21%), Positives = 156/385 (40%), Gaps = 49/385 (12%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHDGDDLYHIM 62 Y+ QL K D L+Q + F+ N Q I P +YR +A+F + + + Sbjct: 92 YKAQLDFKKDLLKQALNKFKPANYQNYELRKTIGMENPWNYRNKAQFQLRQIDGQVEAGL 151 Query: 63 FDQQTKERMRIDYFM---PGSLLINALMIEMMATIRL--------EPLLRAKLFQIDYLT 111 + + + + ID + P + + +++++ +L + R + ++ T Sbjct: 152 YQADSHQLVPIDNCLVQQPATTKVMNTLVDLLNKFQLPIYDERKNSGIFRTLMVRVGIQT 211 Query: 112 SQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERL 171 + +T + +E +R+ + I + KT + + D+ L Sbjct: 212 GEVQVVFIT----QSQKFPQKEKMVRVINEQLPEVVSIMQNVQNKKTSLVMG----DDTL 263 Query: 172 TVAGRTLIYRQIENSF--TQPNAGINVHMLEWVLAATKGIQG-------DLLELYCGNGN 222 + G+ I I + P A ++ + + +GI+ +++ YCG G Sbjct: 264 HLWGKESIEEHINDVVFDLSPRAFFQLNPEQTEVLYNEGIKALDLQPNETVVDAYCGVGT 323 Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282 L LA+ +V ++ +++ AR+N V N ++++ +E Sbjct: 324 IGLSLAKQAHQVRGMDTIPAAIDDARFNAKRLGVTNTHYAVGTAEDLLPKWFKE------ 377 Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDA--TVGMVQAYPHILYISCNPDSLCRDLSILSTTHT 340 ++ I VDPPR+GLD T + Q ++YISCN +L RDL L+ + Sbjct: 378 ------GFKPDAIVVDPPRTGLDRKLLTALLKQPPKKMVYISCNVSTLARDLVQLAKVYQ 431 Query: 341 IERLALFDQFPYTRHMECGVLLVRK 365 ++ L D FP T E V L RK Sbjct: 432 VDYLQSVDMFPQTARCEVVVKLTRK 456 >gi|256851520|ref|ZP_05556909.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus jensenii 27-2-CHN] gi|260660943|ref|ZP_05861858.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus jensenii 115-3-CHN] gi|282932756|ref|ZP_06338162.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus jensenii 208-1] gi|256616582|gb|EEU21770.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus jensenii 27-2-CHN] gi|260548665|gb|EEX24640.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus jensenii 115-3-CHN] gi|281303112|gb|EFA95308.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus jensenii 208-1] Length = 458 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 44/153 (28%), Positives = 75/153 (49%), Gaps = 14/153 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L++ Y G G ++ + + +V+ +E +VE A +N+ NHV N + ++ S ++ Sbjct: 313 LIDAYSGVGTIGIIASDYVKQVIGIESIPEAVEDAMHNVKLNHVRNTEYLQGSVEKILPQ 372 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYPH-ILYISCNPDSLCR 330 ++ N ID + VDPPR+GL + + + Q P +YISCNP +L + Sbjct: 373 LK-----NSGVPID-------ALIVDPPRTGLAKSLIKTIMQVKPESFVYISCNPSTLAQ 420 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363 DL +LS + + + D P T E LV Sbjct: 421 DLVMLSEVYDVRVIENVDMLPQTARCEAIAKLV 453 >gi|257066487|ref|YP_003152743.1| RNA methyltransferase, TrmA family [Anaerococcus prevotii DSM 20548] gi|256798367|gb|ACV29022.1| RNA methyltransferase, TrmA family [Anaerococcus prevotii DSM 20548] Length = 457 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 47/184 (25%), Positives = 85/184 (46%), Gaps = 19/184 (10%) Query: 186 SFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 SF QPN + + Q D+L+LY G G + V+A+ +EI + ++ Sbjct: 288 SFFQPNIYTAEKLYQKAFDLANINQSMDVLDLYSGTGTITQVMAQRARTATGIEIVEEAI 347 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 + A N N ++N+ + + L++I+ ++ I +DPPR+G+ Sbjct: 348 DKAWENAKINEIDNINFLCG---------------DVLEEIEKVGDKYDVIILDPPRAGI 392 Query: 305 DDATVGMVQA--YPHILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHMECGVL 361 ++ + +YISCNP + +L ++ I+ ++DQFP +RH+E L Sbjct: 393 SPKSLEKILKIDTEKFIYISCNPKTQVENLKEFINQGFEIKDYEIYDQFPKSRHLEAIAL 452 Query: 362 LVRK 365 L RK Sbjct: 453 LTRK 456 >gi|194398750|ref|YP_002038492.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae G54] gi|194358417|gb|ACF56865.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae G54] Length = 451 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 43/155 (27%), Positives = 70/155 (45%), Gaps = 14/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L++ YCG G A+ + ++I ++E A+ N +N +++E Sbjct: 308 LIDAYCGVGTIGFAFAKKVKTLRGMDIIPEAIEDAKRNAKRMGFDNTHYEAGTAEEIIPR 367 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330 +E YR + VDPPR+GLDD + + Y ++YISCN +L R Sbjct: 368 WYKE------------GYRADALIVDPPRTGLDDKLLDTILTYVPEKMVYISCNVSTLAR 415 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 DL L + + + D FP+T E V L++K Sbjct: 416 DLVRLVEVYDLHYIQSVDMFPHTARTEAVVKLIKK 450 >gi|225859667|ref|YP_002741177.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae 70585] gi|225721520|gb|ACO17374.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae 70585] Length = 451 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 43/155 (27%), Positives = 70/155 (45%), Gaps = 14/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L++ YCG G A+ + ++I ++E A+ N +N +++E Sbjct: 308 LIDAYCGVGTIGFAFAKKVKTLRGMDIIPEAIEDAKRNAKRMGFDNTHYEAGTAEEIIPR 367 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330 +E YR + VDPPR+GLDD + + Y ++YISCN +L R Sbjct: 368 WYKE------------GYRADALIVDPPRTGLDDKLLDTILTYVPEKMVYISCNVSTLAR 415 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 DL L + + + D FP+T E V L++K Sbjct: 416 DLVRLVEVYDLHYIQSVDMFPHTARTEAVVKLIKK 450 >gi|168492125|ref|ZP_02716268.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae CDC0288-04] gi|183573724|gb|EDT94252.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae CDC0288-04] Length = 451 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 43/155 (27%), Positives = 70/155 (45%), Gaps = 14/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L++ YCG G A+ + ++I ++E A+ N +N +++E Sbjct: 308 LIDAYCGVGTIGFAFAKKVKTLRGMDIIPEAIEDAKRNAKRMGFDNTHYEAGTAEEIIPR 367 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330 +E YR + VDPPR+GLDD + + Y ++YISCN +L R Sbjct: 368 WYKE------------GYRADALIVDPPRTGLDDKLLDTILTYVPEKMVYISCNVSTLAR 415 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 DL L + + + D FP+T E V L++K Sbjct: 416 DLVRLVEVYDLHYIQSVDMFPHTARTEAVVKLIKK 450 >gi|163788804|ref|ZP_02183249.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Flavobacteriales bacterium ALC-1] gi|159876041|gb|EDP70100.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Flavobacteriales bacterium ALC-1] Length = 484 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 40/158 (25%), Positives = 83/158 (52%), Gaps = 17/158 (10%) Query: 213 LLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270 +L+L+CG G ++A + +++ V+I ++E A+ N N++ ++ +F Sbjct: 339 VLDLFCGTGTIGQIIASKANNTKIVGVDIVASAIEDAKENAKRNNIEGLQFYAADVGKF- 397 Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSL 328 L + ++ + +TI +DP R+G+ T+ + ++Y+SCNP + Sbjct: 398 -----------LNEHPEYTNKIRTIILDPARAGIAPKTLKKIINLNADRLVYVSCNPATQ 446 Query: 329 CRDLS-ILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 RD ++ + + I++++L DQFP+T H+E VL +K Sbjct: 447 ARDTEQLMLSGYEIKKMSLVDQFPHTAHIETVVLFEKK 484 >gi|148985480|ref|ZP_01818669.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae SP3-BS71] gi|147922200|gb|EDK73321.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae SP3-BS71] Length = 463 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 43/155 (27%), Positives = 70/155 (45%), Gaps = 14/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L++ YCG G A+ + ++I ++E A+ N +N +++E Sbjct: 308 LIDAYCGVGTIGFAFAKKVKTLRGMDIIPEAIEDAKRNAKRMGFDNTHYEAGTAEEIIPR 367 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330 +E YR + VDPPR+GLDD + + Y ++YISCN +L R Sbjct: 368 WYKE------------GYRADALIVDPPRTGLDDKLLDTILTYVPEKMVYISCNVSTLAR 415 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 DL L + + + D FP+T E V L++K Sbjct: 416 DLVRLVEVYDLHYIQSVDMFPHTARTEAVVKLIKK 450 >gi|148998432|ref|ZP_01825873.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae SP11-BS70] gi|147755625|gb|EDK62671.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae SP11-BS70] Length = 451 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 43/155 (27%), Positives = 70/155 (45%), Gaps = 14/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L++ YCG G A+ + ++I ++E A+ N +N +++E Sbjct: 308 LIDAYCGVGTIGFAFAKKVKTLRGMDIIPEAIEDAKRNAKRMGFDNTHYEAGTAEEIIPR 367 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330 +E YR + VDPPR+GLDD + + Y ++YISCN +L R Sbjct: 368 WYKE------------GYRADALIVDPPRTGLDDKLLDTILTYVPEKMVYISCNVSTLAR 415 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 DL L + + + D FP+T E V L++K Sbjct: 416 DLVRLVEVYDLHYIQSVDMFPHTARTEAVVKLIKK 450 >gi|15901728|ref|NP_346332.1| RNA methyltransferase [Streptococcus pneumoniae TIGR4] gi|111656930|ref|ZP_01407750.1| hypothetical protein SpneT_02001826 [Streptococcus pneumoniae TIGR4] gi|14973406|gb|AAK75972.1| RNA methyltransferase, TrmA family [Streptococcus pneumoniae TIGR4] Length = 436 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 43/155 (27%), Positives = 70/155 (45%), Gaps = 14/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L++ YCG G A+ + ++I ++E A+ N +N +++E Sbjct: 293 LIDAYCGVGTIGFAFAKKVKTLRGMDIIPEAIEDAKRNAKRMGFDNTHYEAGTAEEIIPR 352 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330 +E YR + VDPPR+GLDD + + Y ++YISCN +L R Sbjct: 353 WYKE------------GYRADALIVDPPRTGLDDKLLDTILTYVPEKMVYISCNVSTLAR 400 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 DL L + + + D FP+T E V L++K Sbjct: 401 DLVRLVEVYDLHYIQSVDMFPHTARTEAVVKLIKK 435 >gi|326692440|ref|ZP_08229445.1| RNA methyltransferase [Leuconostoc argentinum KCTC 3773] Length = 464 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 59/187 (31%), Positives = 84/187 (44%), Gaps = 21/187 (11%) Query: 185 NSFTQPNAGINVHMLEWVLAATK-GIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAK 241 NSF Q N + + LAA K G++ ++ Y G G +L +A V VE+ + Sbjct: 289 NSFYQVNPQTTATL--YTLAAEKAGLKPTNIAVDAYSGIGTITLSIADKVKHVYGVEVVE 346 Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301 +V A N N ++NV V + E A E + +FVDPPR Sbjct: 347 NAVADAEQNARNNQIDNVTFVTADAPEQMVAWAAE------------GLKPNVVFVDPPR 394 Query: 302 SGLDDATVGMVQAY-PH-ILYISCNPDSLCRD-LSILSTTHTIE-RLALFDQFPYTRHME 357 GL + V A P +YISCNP +L RD + IL+ I+ + DQFP T H+E Sbjct: 395 KGLTAELISAVAAMAPETFVYISCNPATLARDAVQILAEGFEIDGPVQPLDQFPQTTHVE 454 Query: 358 CGVLLVR 364 + R Sbjct: 455 TITVFKR 461 >gi|322831386|ref|YP_004211413.1| RNA methyltransferase, TrmA family [Rahnella sp. Y9602] gi|321166587|gb|ADW72286.1| RNA methyltransferase, TrmA family [Rahnella sp. Y9602] Length = 456 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 51/180 (28%), Positives = 81/180 (45%), Gaps = 15/180 (8%) Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 F Q N +N M+ L + D +L+L+CG GNF+L LA+ ++V+ VE V Sbjct: 278 FIQVNDAVNQQMVAQALDWLELTPEDRVLDLFCGMGNFTLPLAKRANQVVGVEGVATLVA 337 Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD 305 + N N + NV E + + + F I +DP R G Sbjct: 338 NGQDNARNNGLENVSFF------------HENLEDDVSKQPWAAQGFNKILLDPARGGAA 385 Query: 306 DATVGMVQAYP-HILYISCNPDSLCRDLSI-LSTTHTIERLALFDQFPYTRHMECGVLLV 363 +V+ P ++Y+SCNP +L RD I L + + + + D FP+T H+E L + Sbjct: 386 GVMTHIVKLAPARVVYVSCNPTTLARDSKILLEAGYRLAGVRMLDMFPHTGHLESMALFI 445 >gi|289578813|ref|YP_003477440.1| RNA methyltransferase, TrmA family [Thermoanaerobacter italicus Ab9] gi|289528526|gb|ADD02878.1| RNA methyltransferase, TrmA family [Thermoanaerobacter italicus Ab9] Length = 453 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 47/156 (30%), Positives = 74/156 (47%), Gaps = 15/156 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 ++++YCG G SL A+ V +E +VE A+ N N + NV+ + + Sbjct: 309 VIDVYCGIGTISLFAAQKAFFVYGIEAVHQAVEDAKRNAYINGIKNVEFI---------S 359 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330 + E+ L D + + + +DPPR G D + +V P I+Y+SCNP +L R Sbjct: 360 GQAEKVMPELVDKGV---KADVVIIDPPRKGCDIPVLEAIVNMNPQKIVYVSCNPSTLAR 416 Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRK 365 DL L + + D FPYT H+E L+ K Sbjct: 417 DLRYLDDKGYKTMEVQPVDMFPYTHHVESVCLITNK 452 >gi|114567733|ref|YP_754887.1| tRNA (uracil-5-) -methyltransferase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114338668|gb|ABI69516.1| tRNA (uracil-5-) -methyltransferase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 419 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 58/187 (31%), Positives = 88/187 (47%), Gaps = 26/187 (13%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 +F Q N M+ +L+ +L+ +CG G+ +L LAR +RV+ VE +P++ Sbjct: 249 GAFFQVNHCQAEEMIRLILSLVDFSGKTVLDAFCGVGSIALNLARQAERVIGVESYEPAI 308 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD-IDIHSYRFKTIFVDPPRSG 303 AR N + NV EF ER R+ + ID+ I +DPPRSG Sbjct: 309 HDARSNAIEAGIYNV--------EFIHGF-CERVVARIDEPIDV-------IVLDPPRSG 352 Query: 304 LDDATVGMVQAYP-----HILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHME 357 ++QA I+Y+SCNP +L RDL++ + + D FP T H+E Sbjct: 353 CKKE---LIQACSRISPREIVYVSCNPATLARDLALFGQLGYRPLLIQPIDMFPRTYHVE 409 Query: 358 CGVLLVR 364 VL+ R Sbjct: 410 TVVLMSR 416 >gi|182684846|ref|YP_001836592.1| RNA methyltransferase [Streptococcus pneumoniae CGSP14] gi|225857490|ref|YP_002739001.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae P1031] gi|303253868|ref|ZP_07339992.1| RNA methyltransferase [Streptococcus pneumoniae BS455] gi|303260797|ref|ZP_07346751.1| RNA methyltransferase, TrmA family protein [Streptococcus pneumoniae SP-BS293] gi|303267661|ref|ZP_07353494.1| RNA methyltransferase, TrmA family protein [Streptococcus pneumoniae BS457] gi|182630180|gb|ACB91128.1| RNA methyltransferase, TrmA family [Streptococcus pneumoniae CGSP14] gi|225725197|gb|ACO21049.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae P1031] gi|302599173|gb|EFL66195.1| RNA methyltransferase [Streptococcus pneumoniae BS455] gi|302638058|gb|EFL68539.1| RNA methyltransferase, TrmA family protein [Streptococcus pneumoniae SP-BS293] gi|302642802|gb|EFL73116.1| RNA methyltransferase, TrmA family protein [Streptococcus pneumoniae BS457] Length = 451 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 43/155 (27%), Positives = 70/155 (45%), Gaps = 14/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L++ YCG G A+ + ++I ++E A+ N +N +++E Sbjct: 308 LIDAYCGVGTIGFAFAKKVKTLRGMDIIPEAIEDAKRNAKRMGFDNTHYEAGTAEEIIPR 367 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330 +E YR + VDPPR+GLDD + + Y ++YISCN +L R Sbjct: 368 WYKE------------GYRADALIVDPPRTGLDDKLLDTILTYVPEKMVYISCNVSTLAR 415 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 DL L + + + D FP+T E V L++K Sbjct: 416 DLVRLVEVYDLHYIQSVDMFPHTARTEAVVKLIKK 450 >gi|297545033|ref|YP_003677335.1| TrmA family RNA methyltransferase [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296842808|gb|ADH61324.1| RNA methyltransferase, TrmA family [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 453 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 47/156 (30%), Positives = 74/156 (47%), Gaps = 15/156 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 ++++YCG G SL A+ V +E +VE A+ N N + NV+ + + Sbjct: 309 VIDVYCGIGTISLFAAQKAFFVYGIEAVHQAVEDAKRNAYINGIKNVEFI---------S 359 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330 + E+ L D + + + +DPPR G D + +V P I+Y+SCNP +L R Sbjct: 360 GQAEKVMPELVDKGV---KADVVIIDPPRKGCDIPVLEAIVNMNPQKIVYVSCNPSTLAR 416 Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRK 365 DL L + + D FPYT H+E L+ K Sbjct: 417 DLRYLDDKGYKTMEVQPVDMFPYTHHVESVCLITNK 452 >gi|188585106|ref|YP_001916651.1| RNA methyltransferase, TrmA family [Natranaerobius thermophilus JW/NM-WN-LF] gi|179349793|gb|ACB84063.1| RNA methyltransferase, TrmA family [Natranaerobius thermophilus JW/NM-WN-LF] Length = 454 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 47/165 (28%), Positives = 80/165 (48%), Gaps = 16/165 (9%) Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262 L KG++ +++++YCG G SL+ A + +V+ +EIA+ +V+ A N N N Sbjct: 299 LCKLKGVE-NVMDIYCGIGTISLLAAENASKVVGIEIAEEAVKDANINKNINGQENA--- 354 Query: 263 RMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILY 320 F QA + + + I Y + + +DPPR G D+ + + I Y Sbjct: 355 -----WFYQARAEDEKTESI----IQDYSPEIVIMDPPRKGCDENLLTSLDWIRPEKIAY 405 Query: 321 ISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 +SCNP +L RD+ ++ + E D FP T H+E +L + Sbjct: 406 VSCNPATLARDVGKLIEFGYYPELFQPVDMFPQTTHIEVICILTK 450 >gi|163813943|ref|ZP_02205337.1| hypothetical protein COPEUT_00096 [Coprococcus eutactus ATCC 27759] gi|158450813|gb|EDP27808.1| hypothetical protein COPEUT_00096 [Coprococcus eutactus ATCC 27759] Length = 457 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 45/155 (29%), Positives = 73/155 (47%), Gaps = 18/155 (11%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + +LY G G + +LA +V+ VEI + +V AAR N N ++N + + + Sbjct: 317 IFDLYSGTGTIAQLLAPVAKKVIGVEIVEEAVAAARVNAKLNGLDNCEFIAGDVLKVIDE 376 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCR 330 + + +F I +DPPR G++ + + Y ++YISC P SL R Sbjct: 377 IEEKPDF---------------IVLDPPRDGINPKALTKIINYGVNELVYISCKPTSLAR 421 Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364 DL L + + + DQFP T H+E V + R Sbjct: 422 DLVTLQENGYYVTKACAVDQFPGTVHVETIVKMQR 456 >gi|328869968|gb|EGG18343.1| 23S rRNA (Uracil-5-)-methyltransferase [Dictyostelium fasciculatum] Length = 1231 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 56/194 (28%), Positives = 91/194 (46%), Gaps = 18/194 (9%) Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 F Q NA N M++ VL D +LYCG GNF++ +A+ V+ E+++ + Sbjct: 1041 FMQVNANANTVMVQKVLDYLNLNPSDNCYDLYCGVGNFTIPMAKKAGSVIGFELSQELLT 1100 Query: 246 AARYNIAANHVNNV--KIVRMSSKEFTQ---------AMRREREFNRLKDIDIHS--YRF 292 +N+ H+NNV K+ + FT+ A+ + + + I + R Sbjct: 1101 KLIHNV---HLNNVKGKVQAVLCNLFTEDIPFCGNDVALENGVDATQQQQQQIENTPMRI 1157 Query: 293 KTIFVDPPRSGLDDATVGMVQAYPHILYISCNPD-SLCRDLSILSTTHTIERLALFDQFP 351 I +DPPRSG + I+Y+SC P+ SL +DL +LS + ++ + L D F Sbjct: 1158 NKIVLDPPRSGAQKICRSIPPGLDCIVYVSCGPETSLVKDLLLLSPNYQVKEIKLLDMFA 1217 Query: 352 YTRHMECGVLLVRK 365 T ME L+ K Sbjct: 1218 QTSKMEAIAYLIPK 1231 >gi|328861344|gb|EGG10447.1| hypothetical protein MELLADRAFT_33671 [Melampsora larici-populina 98AG31] Length = 422 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 41/152 (26%), Positives = 76/152 (50%), Gaps = 15/152 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L++ YCG+G FS+ LA F + + +E++ S+ A++N N + NV+ + ++ Sbjct: 280 LVDAYCGSGLFSIGLADQFTKSMGIEVSSESIYWAKHNAKLNKIENVEFMVGKAEAI--- 336 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330 D++ + + T+ +DPPR G D+ + + + ILY+SCN + R Sbjct: 337 ---------FADLNFPA-QMTTVIIDPPRKGCDEVFLDQLLDFKPKRILYVSCNVHTQAR 386 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLL 362 D+ L + ++ + D FP + H E V L Sbjct: 387 DVGRLGKVYKVQSIRGADFFPQSHHCESIVSL 418 >gi|307706544|ref|ZP_07643351.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus mitis SK321] gi|307617999|gb|EFN97159.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus mitis SK321] Length = 451 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 46/155 (29%), Positives = 78/155 (50%), Gaps = 15/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ Y G G L +A+H V VE+ +VE ++ N N+++N V +++ A Sbjct: 308 VIDAYSGIGTIGLSVAKHVKEVYGVEVIPEAVENSKKNAQLNNISNAHYVCDTAE---NA 364 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV--GMVQAYPHILYISCNPDSLCR 330 M+ N LK+ + I VDPPR GL ++ + I YISCN ++ R Sbjct: 365 MK-----NWLKE----GIQPTVILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMAR 415 Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364 D+ + + ++++ D FP T H+EC LLV+ Sbjct: 416 DIKLYQELGYDLKKVQPVDLFPQTHHVECVALLVK 450 >gi|297206333|ref|ZP_06923728.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus jensenii JV-V16] gi|297149459|gb|EFH29757.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus jensenii JV-V16] Length = 458 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 44/153 (28%), Positives = 75/153 (49%), Gaps = 14/153 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L++ Y G G ++ + + +V+ +E +VE A +N+ NHV N + ++ S ++ Sbjct: 313 LIDAYSGVGTIGIIASDYVKQVIGIESIPEAVEDAMHNVKLNHVRNTEYLQGSVEKILPQ 372 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYPH-ILYISCNPDSLCR 330 ++ N ID + VDPPR+GL + + + Q P +YISCNP +L + Sbjct: 373 LK-----NSGVPID-------ALIVDPPRTGLAKSLIKTIMQVKPESFVYISCNPSTLAQ 420 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363 DL +LS + + + D P T E LV Sbjct: 421 DLVMLSEVYDVRVIENVDMLPQTARCEAIAKLV 453 >gi|196234487|ref|ZP_03133312.1| putative RNA methyltransferase [Chthoniobacter flavus Ellin428] gi|196221468|gb|EDY16013.1| putative RNA methyltransferase [Chthoniobacter flavus Ellin428] Length = 150 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 48/163 (29%), Positives = 81/163 (49%), Gaps = 18/163 (11%) Query: 205 ATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRM 264 A +G +G L++ Y G G F+ LA F++V+ +E +VE+AR Sbjct: 4 AVRG-KGVLVDAYSGAGLFARALADRFEKVVGIEENFAAVESARR--------------- 47 Query: 265 SSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYIS 322 S++ + E + + + +H T+ +DPP GL +V A ++Y+S Sbjct: 48 SAQPHESYIAGEVGAHLGEVLSVHDAAQTTLLLDPPTEGLAARVCDLVLGGAPAEVIYVS 107 Query: 323 CNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 CNP +L RDL++L +++ + + D FP T +E V LVRK Sbjct: 108 CNPATLARDLALLRSSYELLSVTPLDMFPQTAEIEVVVHLVRK 150 >gi|21910560|ref|NP_664828.1| TrmA family RNA methyltransferase [Streptococcus pyogenes MGAS315] gi|21904760|gb|AAM79631.1| putative RNA methyltransferase, TrmA family [Streptococcus pyogenes MGAS315] Length = 409 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 49/184 (26%), Positives = 86/184 (46%), Gaps = 16/184 (8%) Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 SF Q N + + + +A + + D+ ++ Y G G L A+ V VE+ + +V Sbjct: 238 SFYQVNTVMAEKLYQTAIAFSDLSKDDIVIDAYSGIGTIGLSFAKTVKAVYGVEVIEAAV 297 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 A++N A N + N V +++ ++ + I VDPPR GL Sbjct: 298 RDAQHNAALNGITNAYFVADTAEHAMATWAKD------------GIKPSVILVDPPRKGL 345 Query: 305 DDATV-GMVQAYPH-ILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVL 361 ++ + V P I Y+SCNP ++ RD+ + + ++ D FP T H+EC VL Sbjct: 346 TESFIQASVAMGPQKITYVSCNPATMARDIKRYQELGYKLAKVQPVDLFPQTHHVECVVL 405 Query: 362 LVRK 365 L+++ Sbjct: 406 LIKE 409 >gi|160944108|ref|ZP_02091338.1| hypothetical protein FAEPRAM212_01610 [Faecalibacterium prausnitzii M21/2] gi|158444784|gb|EDP21788.1| hypothetical protein FAEPRAM212_01610 [Faecalibacterium prausnitzii M21/2] Length = 458 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 48/155 (30%), Positives = 72/155 (46%), Gaps = 12/155 (7%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 LL+LYCG G L +A ++ VEI ++E+A+ N A R + QA Sbjct: 310 LLDLYCGMGTIGLSMAGQCRELIGVEIVPEAIESAKANAARMGEAVAAKSRFFCADAGQA 369 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCR 330 + DI + +DPPR G D+AT+ V A ++Y+SCNP + R Sbjct: 370 ATQLAAEGLHPDI---------VMLDPPRKGCDEATLSAVVRMAPRRVVYVSCNPATAAR 420 Query: 331 DLSILS-TTHTIERLALFDQFPYTRHMECGVLLVR 364 D + L + E++ D FP T+H+E V R Sbjct: 421 DAAWLEQNGYHAEKVQPVDLFPRTKHVEACVCYTR 455 >gi|149921243|ref|ZP_01909699.1| RNA methyltransferase [Plesiocystis pacifica SIR-1] gi|149817903|gb|EDM77365.1| RNA methyltransferase [Plesiocystis pacifica SIR-1] Length = 482 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 60/216 (27%), Positives = 97/216 (44%), Gaps = 32/216 (14%) Query: 154 RANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATK--GIQG 211 R + ++ + R +++ L G T Q +F+Q A N +++E V A + G Sbjct: 250 RGGRERVGVGRTHLE--LDGDGPTPPVSQGPFTFSQAQAAQNRNLVEHVAARVRESGRDA 307 Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVE-----IAKPSVEAARYNIAANHVNNVKIVRMSS 266 +LEL+ G GNFS VLAR V AV+ IA A R+ + N Sbjct: 308 RVLELHAGVGNFSRVLARSAKAVWAVDGDREAIANLQRTAERWGLRIN------------ 355 Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG--MVQAYPHILYISCN 324 +R + L + R+ + +DPPRSG+ +A + ++Y+SC+ Sbjct: 356 ------AKRGQAERLLAKLATSGRRYDVVVLDPPRSGIGEAAARDLLSVVRDRVVYVSCD 409 Query: 325 PDSLCRDLSILSTTHTIERLA---LFDQFPYTRHME 357 P +L RDL++L + LA +FD P T +E Sbjct: 410 PATLARDLAVLLAEGSGLELADLRVFDMMPMTPEVE 445 >gi|145340698|ref|XP_001415457.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144575680|gb|ABO93749.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 536 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 45/168 (26%), Positives = 81/168 (48%), Gaps = 22/168 (13%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK-----IVRMSSK 267 +L+L+CG G L +A RV+ E+ +V+ A+ N N++ N K + R++ Sbjct: 375 VLDLFCGVGTMGLSVASDCSRVMGWEVVPEAVKDAKRNAELNNITNAKFYRVDLARLNPS 434 Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNP 325 + + + + L DI + DP R G+D A + +++ I+Y+SCNP Sbjct: 435 KGPKGLLTTPKGKELPMPDI-------VITDPARPGMDSALIAILRTIGARRIVYVSCNP 487 Query: 326 DSLCRDLSILST--------THTIERLALFDQFPYTRHMECGVLLVRK 365 + RDL +L+ + ++ + D FP+T H+E +L RK Sbjct: 488 ATQARDLLLLTAPSEGADDVAYELKTVTPVDMFPHTTHVESVAVLERK 535 >gi|67923770|ref|ZP_00517234.1| tRNA (uracil-5-)-methyltransferase/TrmA [Crocosphaera watsonii WH 8501] gi|67854397|gb|EAM49692.1| tRNA (uracil-5-)-methyltransferase/TrmA [Crocosphaera watsonii WH 8501] Length = 455 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 46/154 (29%), Positives = 74/154 (48%), Gaps = 21/154 (13%) Query: 209 IQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268 ++ L++ YCG G F+L LA+ + + +E + S+ A N N ++N+K Sbjct: 308 VEKTLIDAYCGVGTFTLPLAQKVAQAVGIENNQNSITQAENNAKINGIDNIKF------- 360 Query: 269 FTQAMRREREF-NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNP 325 +T + F N DI + +DPPR G D + + ++ P I+YISC P Sbjct: 361 YTGNVENILPFLNIFPDI---------VVLDPPRKGCDRSVIDTLRKINPPLIIYISCQP 411 Query: 326 DSLCRDLSILSTT--HTIERLALFDQFPYTRHME 357 +L RDL L + +E + D FP T H+E Sbjct: 412 STLARDLKKLCQEDLYKVESIQPIDFFPQTPHVE 445 >gi|329118081|ref|ZP_08246793.1| 23S rRNA (uracil-5-)-methyltransferase [Neisseria bacilliformis ATCC BAA-1200] gi|327465741|gb|EGF12014.1| 23S rRNA (uracil-5-)-methyltransferase [Neisseria bacilliformis ATCC BAA-1200] Length = 452 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 51/177 (28%), Positives = 85/177 (48%), Gaps = 15/177 (8%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 FTQ NA +N M+ + GD + +L+CG GNF+L LA+ +V+ VE + Sbjct: 280 GDFTQANAAVNNIMVRRAVDMLDPAHGDKIADLFCGLGNFTLPLAQSGAQVVGVEGSPAL 339 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 V A N N + + F R+ R + ++ D + +DPPR+G Sbjct: 340 VRRAAGNARLNGFGG-NVSFEVANLFKTGGRQSRIW---QNAD-------KLLIDPPRAG 388 Query: 304 LDD--ATVGMVQAYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHME 357 + ++G+ + I+Y+SCNP + RD ++L + + L L + FP T H+E Sbjct: 389 AYEIVKSLGLSRQPDRIVYVSCNPATFARDAAVLVDKGYKFKLLGLVNLFPQTEHVE 445 >gi|325662109|ref|ZP_08150727.1| hypothetical protein HMPREF0490_01465 [Lachnospiraceae bacterium 4_1_37FAA] gi|325471558|gb|EGC74778.1| hypothetical protein HMPREF0490_01465 [Lachnospiraceae bacterium 4_1_37FAA] Length = 459 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 62/231 (26%), Positives = 107/231 (46%), Gaps = 31/231 (13%) Query: 142 LHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEW 201 LH + + ++++TKI +DY E++ L ++ SF QPN+ E Sbjct: 247 LHILNDSLSDVVQSDETKILYGQDYFYEKIM----GLEFKITPFSFFQPNS----RGAEV 298 Query: 202 VLAATKGIQGDL-----LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV 256 + + + GD+ +L+ G G + VLA +V+ VEI + +VEAA+ N N + Sbjct: 299 LYSTVREYIGDIHDMTVYDLFSGTGTIAQVLAPVAKQVIGVEIIEEAVEAAKENAERNGL 358 Query: 257 NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY- 315 +N + + F L +I+ + I +DPPR G+ + + Y Sbjct: 359 HNCRFIAGDV------------FKVLDEIE---EKPDVIVLDPPRDGIHPKALPKILDYG 403 Query: 316 -PHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364 +I+YISC SL RDL ++ + + + DQF T H+E VL+ + Sbjct: 404 VENIVYISCKATSLARDLEMIQARGYRVVKCTAVDQFCQTVHVETVVLMSK 454 >gi|288803297|ref|ZP_06408730.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella melaninogenica D18] gi|288334117|gb|EFC72559.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella melaninogenica D18] Length = 474 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 51/184 (27%), Positives = 83/184 (45%), Gaps = 16/184 (8%) Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDLL--ELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 SF Q N H+ V + G+ L +LY G G + +A+ +V+ +E + Sbjct: 303 SFYQTNTEQAYHLYS-VAREFANLTGNELVYDLYTGTGTIANFVAKKAQKVIGIEYVPEA 361 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 +E A+ N N ++N K+ +D R I DPPR+G Sbjct: 362 IEDAKVNSEVNKIDNTLFYAGDMKDILT-----------EDFISEHGRPDVIITDPPRAG 410 Query: 304 LDDATVGMV-QAYPH-ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVL 361 + V ++ A P I+Y+SCNP + RDL++L + + + D FP T H+E VL Sbjct: 411 MHPDVVNVILGASPKRIVYVSCNPATQARDLALLDADYKVSAVQPVDMFPQTPHVENVVL 470 Query: 362 LVRK 365 L ++ Sbjct: 471 LEKR 474 >gi|170016553|ref|YP_001727472.1| 23S rRNA (uracil-5-)-methyltransferase [Leuconostoc citreum KM20] gi|169803410|gb|ACA82028.1| 23S rRNA (uracil-5-)-methyltransferase [Leuconostoc citreum KM20] Length = 498 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 59/205 (28%), Positives = 93/205 (45%), Gaps = 19/205 (9%) Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGN 222 +DY++E TV G+T ++ +F Q N + L+A D L++ Y G G Sbjct: 309 KDYIEE--TVMGKT--FQLSPRAFMQLNHTQMTVVYNEALSALNLTHADKLVDAYAGVGT 364 Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282 L LA V +EI +V+ A N NH++N K +++ + E Sbjct: 365 IGLSLADKAGEVRGMEIIPEAVDDANINAKINHISNAKYEVGTAEVLFPKWQAE------ 418 Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCRDLSILSTTHT 340 + + VDPPR+GLD A +++ P +YISCN +L RDL L+ + Sbjct: 419 ------GWLADALVVDPPRTGLDTALRREIIRTKPEKFVYISCNASTLARDLVDLTKAYK 472 Query: 341 IERLALFDQFPYTRHMECGVLLVRK 365 ++ + D FP T E V L R+ Sbjct: 473 VDYIQSIDMFPQTARWEGVVKLTRR 497 >gi|269797777|ref|YP_003311677.1| RNA methyltransferase, TrmA family [Veillonella parvula DSM 2008] gi|269094406|gb|ACZ24397.1| RNA methyltransferase, TrmA family [Veillonella parvula DSM 2008] Length = 457 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 87/386 (22%), Positives = 154/386 (39%), Gaps = 56/386 (14%) Query: 10 YEQQLAEKVDRLRQMM--LAFQVPNL---QIFRSEPIHYRMRAEFHIWHDGDDL---YHI 61 YE QL+ K +++ ++ +A Q P+L + P YR + + + D+ ++ Sbjct: 92 YEGQLSLKTQKVKDVIERIAHQNPDLVKPTLGPKNPWAYRNKMQMPVGGTKGDIQMGFYA 151 Query: 62 MFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTL 121 M + G+ +I ++ AK F I+ + + ++ Sbjct: 152 MGSHDIVQGTNCPIQDEGNNIIAQACYQI-----------AKEFDIEPYDEHTGKGVLRH 200 Query: 122 IYHRLLDDAWRECAIRLRDAL-HARKYQIQLIGR------------ANKTKICLDRD--- 165 + R+ W + + L H K+ +L R +T + L Sbjct: 201 VIGRIGQSGWMIILVTATEHLPHQEKWVEKLTERVPQVETIVHNVNGKRTNVILGPKNSV 260 Query: 166 -YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAAT--KGIQGDLLELYCGNGN 222 Y D +T + L + +SF Q N + + LA KG + +++ YCG G Sbjct: 261 LYGDGTITDHIKDLRFTLSPHSFFQVNPEQTTVLYDQALAYADLKGTE-IVIDAYCGTGT 319 Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK-IVRMSSKEFTQAMRREREFNR 281 SL LA V+ +EI +P++ AR N N +N + IV ++ E + + Sbjct: 320 ISLFLAYKAKHVIGIEIVEPAITNARENARRNGYDNTEFIVADAAVEIPKLYKA------ 373 Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDA--TVGMVQAYPHILYISCNPDSLCRDLSILS-TT 338 R I DP R+G + T I+Y+SCNP ++ RD+ IL+ Sbjct: 374 -------GVRPDVIVFDPIRAGCKEEVLTSAASMEPKRIVYVSCNPATMARDIEILTHYG 426 Query: 339 HTIERLALFDQFPYTRHMECGVLLVR 364 + ++ + D FP T H+E LL R Sbjct: 427 YELKEVQPVDMFPMTAHVEAVALLTR 452 >gi|262406440|ref|ZP_06082989.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides sp. 2_1_22] gi|294643718|ref|ZP_06721518.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides ovatus SD CC 2a] gi|294807326|ref|ZP_06766138.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides xylanisolvens SD CC 1b] gi|262355143|gb|EEZ04234.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides sp. 2_1_22] gi|292640956|gb|EFF59174.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides ovatus SD CC 2a] gi|294445456|gb|EFG14111.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides xylanisolvens SD CC 1b] Length = 472 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 56/201 (27%), Positives = 93/201 (46%), Gaps = 26/201 (12%) Query: 175 GRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGDLL--ELYCGNGNFS 224 G+ I+ ++E SF Q N+ + L + G+ G+ L +LY G G + Sbjct: 282 GKDHIFEEMEGLRFKVGPKSFYQTNSE-QAYNLYKIARNFAGLTGNELVYDLYTGTGTIA 340 Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE-FTQAMRREREFNRLK 283 ++R +V+ +E ++E A+ N N + N K+ TQ Sbjct: 341 NFVSRQARQVIGIEYVPEAIEDAKVNAEINDIKNAIFYAGDMKDMLTQDF---------- 390 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQ-AYPH-ILYISCNPDSLCRDLSILSTTHTI 341 I+ H R I DPPR+G+ + ++ A P I+Y+SCNP + RDL +L + + Sbjct: 391 -INQHG-RPDVIITDPPRAGMHQDVIDVILFAEPKRIVYVSCNPATQARDLQLLDEKYKV 448 Query: 342 ERLALFDQFPYTRHMECGVLL 362 + + D FP+T H+E VLL Sbjct: 449 KAVQPVDMFPHTHHVENVVLL 469 >gi|257791001|ref|YP_003181607.1| RNA methyltransferase, TrmA family [Eggerthella lenta DSM 2243] gi|317488284|ref|ZP_07946850.1| hypothetical protein HMPREF1023_00548 [Eggerthella sp. 1_3_56FAA] gi|325830894|ref|ZP_08164278.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Eggerthella sp. HGA1] gi|257474898|gb|ACV55218.1| RNA methyltransferase, TrmA family [Eggerthella lenta DSM 2243] gi|316912624|gb|EFV34167.1| hypothetical protein HMPREF1023_00548 [Eggerthella sp. 1_3_56FAA] gi|325487301|gb|EGC89744.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Eggerthella sp. HGA1] Length = 461 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 59/185 (31%), Positives = 84/185 (45%), Gaps = 30/185 (16%) Query: 186 SFTQPNAGINVHMLEWVLAATKGIQG--------DLL--ELYCGNGNFSLVLARHFDRVL 235 SF Q N ++ V+ G G DLL +LY G G FS+ LA+ VL Sbjct: 286 SFFQVNTAQAEKLIACVIEGLGGRMGEDGPEGLDDLLIADLYAGGGTFSVPLAQAGAEVL 345 Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295 AVE A SV R N N V +++++ + RE L +D + Sbjct: 346 AVEAAGSSVRDLRRNADMNRV-DLEVIGGDAA---------RELPELGGLD-------AL 388 Query: 296 FVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPY 352 VDPPR+GL D V + A P + Y+SCNP + RD++ S + + + D FP Sbjct: 389 VVDPPRAGLADGVVESIAAAAPERVAYVSCNPATWARDVARFESQGYRLTSVQPVDMFPQ 448 Query: 353 TRHME 357 T H+E Sbjct: 449 TYHVE 453 >gi|134094485|ref|YP_001099560.1| 23S rRNA 5-methyluridine methyltransferase [Herminiimonas arsenicoxydans] gi|133738388|emb|CAL61433.1| 23S rRNA (Uracil-5-)-methyltransferase rumA (23S rRNA(M-5-U1939)-methyltransferase) [Herminiimonas arsenicoxydans] Length = 461 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 66/267 (24%), Positives = 114/267 (42%), Gaps = 26/267 (9%) Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQ--IQLIGRANKTKIC 161 L QI+ Q +Q +T + R++ E ++L+ K Q +Q G + + Sbjct: 189 LPQIELAIGQGEQDKITALVLRIMAPLSAEDDVKLKAFADEYKVQWWLQPAGPDSAYQFY 248 Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGN 220 + + + L G + ++ + FTQ N IN ++ L D + +L+CG Sbjct: 249 PEDENLHYSLPEFGIKMPFKPTD--FTQVNHQINRVLVARALRLLDAQATDRIADLFCGL 306 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 GNF+L +A V+ +E + E A N AN + A F Sbjct: 307 GNFTLPIATQAGEVVGIEGSTTLTERALENAVANGLAG-----------KTAFYSRNLFE 355 Query: 281 RLKDIDIHSYRFKTIFVDPPRSG---LDDATVGMVQAYP-----HILYISCNPDSLCRDL 332 D I +F + +DPPR G + +A G+ P I+Y+SCNP +L RD Sbjct: 356 AKTDDFIALGKFDRMLIDPPRDGALAVCEALAGLNAVRPDLLPSRIVYVSCNPSTLARDA 415 Query: 333 SIL--STTHTIERLALFDQFPYTRHME 357 ++L + ++ + + FP+T H+E Sbjct: 416 AVLVNEGPYVLKNAGVVNMFPHTSHVE 442 >gi|270292218|ref|ZP_06198433.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus sp. M143] gi|270279746|gb|EFA25588.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus sp. M143] Length = 456 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 42/155 (27%), Positives = 70/155 (45%), Gaps = 14/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L++ YCG G A + ++I ++E A+ N +N +++E Sbjct: 308 LIDAYCGVGTIGFAFANKVKSLRGMDIIPEAIEDAKQNAQRMGFDNTHYEAGTAEEIIPR 367 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330 +E YR + VDPPR+GLDD + + Y ++Y+SCN +L R Sbjct: 368 WYQE------------GYRANALIVDPPRTGLDDKLLDTILTYVPEKMVYVSCNVSTLAR 415 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 DL L + ++ + D FP+T E V L++K Sbjct: 416 DLVKLVKVYDLQYIQSVDMFPHTARTEAVVKLIKK 450 >gi|110800984|ref|YP_694814.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium perfringens ATCC 13124] gi|110675631|gb|ABG84618.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium perfringens ATCC 13124] Length = 455 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 46/158 (29%), Positives = 74/158 (46%), Gaps = 17/158 (10%) Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271 ++ + YCG G +L L++ +V VEI +++ A N N V NV+ S+ Sbjct: 311 EVFDAYCGTGTITLFLSQKAKKVYGVEIIPQAIDNAWINAKENKVENVEFFVGESEVV-- 368 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLC 329 + D+ + + VDPPR G D + + I+Y+SC+P +L Sbjct: 369 ----------IPDLINKGVKADVVVVDPPRKGCDKKLLDAITNINAKKIVYVSCDPSTLG 418 Query: 330 RDLSILSTT--HTIERLALFDQFPYTRHMECGVLLVRK 365 RDL+IL T+E + D FP T H+E L++K Sbjct: 419 RDLAILEENGYKTLE-VQPVDMFPNTSHVENVAKLIKK 455 >gi|296132411|ref|YP_003639658.1| RNA methyltransferase, TrmA family [Thermincola sp. JR] gi|296030989|gb|ADG81757.1| RNA methyltransferase, TrmA family [Thermincola potens JR] Length = 457 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 48/156 (30%), Positives = 77/156 (49%), Gaps = 15/156 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +L+LYCG G +L LA+ ++V+ +E+ + +V A N N + N + + Sbjct: 312 VLDLYCGIGTIALYLAQFTEKVIGLEVHEAAVADAAANARINGIGNAEFI---------- 361 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD-ATVGMVQAYPH-ILYISCNPDSLCR 330 R +RL + + + VDPPR G+D A + P I+Y+SC+ S+ R Sbjct: 362 --VGRAEDRLPKLAAQGVKADVVVVDPPRKGVDKRALQAICDIGPERIVYVSCDSASMAR 419 Query: 331 DLSILS-TTHTIERLALFDQFPYTRHMECGVLLVRK 365 DL+ L + + + D FP T H+EC LL RK Sbjct: 420 DLAFLRHRGYGVREIQPVDMFPQTHHVECVALLKRK 455 >gi|300214964|gb|ADJ79380.1| tRNA (Uracil-5-)-methyltransferase [Lactobacillus salivarius CECT 5713] Length = 456 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 42/154 (27%), Positives = 78/154 (50%), Gaps = 16/154 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G SL +A+ +V VEI ++E A++N + N ++N+ ++ + + Sbjct: 312 VIDAYCGIGTISLNMAKFAKKVYGVEIVPEAIEDAKHNASLNDLDNLDFEVGEAEVWMEK 371 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCR 330 +++ + I VDPPR GL + + V P ++Y+SCNP +L R Sbjct: 372 WQKQ------------GIKPDVIMVDPPRKGLTSSLIQSAVAMEPKKVVYVSCNPATLVR 419 Query: 331 DL-SILSTTHTIER-LALFDQFPYTRHMECGVLL 362 D+ + + + + + DQFP T H+E +L Sbjct: 420 DIQEFMELGYQVTKPIQPVDQFPQTTHVESVTVL 453 >gi|237714574|ref|ZP_04545055.1| RNA methyltransferase [Bacteroides sp. D1] gi|229445343|gb|EEO51134.1| RNA methyltransferase [Bacteroides sp. D1] Length = 462 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 56/201 (27%), Positives = 93/201 (46%), Gaps = 26/201 (12%) Query: 175 GRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGDLL--ELYCGNGNFS 224 G+ I+ ++E SF Q N+ + L + G+ G+ L +LY G G + Sbjct: 272 GKDHIFEEMEGLRFKVGPKSFYQTNSE-QAYNLYKIARNFAGLTGNELVYDLYTGTGTIA 330 Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE-FTQAMRREREFNRLK 283 ++R +V+ +E ++E A+ N N + N K+ TQ Sbjct: 331 NFVSRQARQVIGIEYVPEAIEDAKVNAEINDIKNAIFYAGDMKDMLTQDF---------- 380 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQ-AYPH-ILYISCNPDSLCRDLSILSTTHTI 341 I+ H R I DPPR+G+ + ++ A P I+Y+SCNP + RDL +L + + Sbjct: 381 -INQHG-RPDVIITDPPRAGMHQDVIDVILFAEPKRIVYVSCNPATQARDLQLLDEKYKV 438 Query: 342 ERLALFDQFPYTRHMECGVLL 362 + + D FP+T H+E VLL Sbjct: 439 KAVQPVDMFPHTHHVENVVLL 459 >gi|293364145|ref|ZP_06610872.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus oralis ATCC 35037] gi|291317323|gb|EFE57749.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus oralis ATCC 35037] Length = 454 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 43/155 (27%), Positives = 70/155 (45%), Gaps = 14/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L++ YCG G A + ++I ++E A+ N +N +++E Sbjct: 308 LIDAYCGVGTIGFAFANKVKSLRGMDIIPEAIEDAKRNAQRMGFDNTHYEAGTAEEIIPR 367 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330 ++ YR + VDPPR+GLDD + + Y ++Y+SCN +L R Sbjct: 368 WYKD------------GYRADALIVDPPRTGLDDKLLDTILTYVPEKMVYVSCNVSTLAR 415 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 DL L + ++ + D FP+T E V LVRK Sbjct: 416 DLVRLVKVYDLQYIQSVDMFPHTARTEAVVKLVRK 450 >gi|228478261|ref|ZP_04062869.1| 23S rRNA-methyltransferase RumA [Streptococcus salivarius SK126] gi|228249940|gb|EEK09210.1| 23S rRNA-methyltransferase RumA [Streptococcus salivarius SK126] Length = 452 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 46/156 (29%), Positives = 76/156 (48%), Gaps = 15/156 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ Y G G L A+ V VE+ + +VE A+ N N + N V S++ A Sbjct: 308 VIDAYSGIGTIGLSFAKQVKEVYGVEVIETAVEDAKKNADRNGITNAHYVADSAE---NA 364 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330 M + + D+ I VDPPR GL ++ + V P I Y+SCNP ++ R Sbjct: 365 MAKWSKDGIKPDV---------IIVDPPRKGLTESFIKASVAMQPEKITYVSCNPATMAR 415 Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVRK 365 D+ + + ++++ D FP T H+EC LL ++ Sbjct: 416 DIKLYQELGYELKKVQPVDLFPQTHHVECVCLLEKR 451 >gi|15613250|ref|NP_241553.1| RNA methyltransferase [Bacillus halodurans C-125] gi|50401684|sp|Q9KF10|Y687_BACHD RecName: Full=Uncharacterized RNA methyltransferase BH0687 gi|10173301|dbj|BAB04406.1| RNA methyltransferase [Bacillus halodurans C-125] Length = 458 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 46/158 (29%), Positives = 74/158 (46%), Gaps = 25/158 (15%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE---- 268 +++ YCG G SL LA+ V VEI ++ A+ N N NV+ +++ Sbjct: 314 VIDAYCGIGTISLFLAQQAKHVYGVEIVPEAISDAKRNARLNGFANVQFAVGDAEKVMPW 373 Query: 269 -FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYP-HILYISCNP 325 + Q +R + I VDPPR G D+A + + P ++Y+SCNP Sbjct: 374 WYAQGVRAD-----------------VIVVDPPRKGCDEALLKTILNMKPDRVVYVSCNP 416 Query: 326 DSLCRDLSILS-TTHTIERLALFDQFPYTRHMECGVLL 362 +L RDL +L + + + D FP+T H+E +L Sbjct: 417 ATLARDLRVLEDGGYETKDVQPVDMFPWTTHIESVAVL 454 >gi|295102269|emb|CBK99814.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Faecalibacterium prausnitzii L2-6] Length = 384 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 50/155 (32%), Positives = 77/155 (49%), Gaps = 15/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +L+ YCG G L + +V+ VE+ + +V A N A H N VK R + + T Sbjct: 240 VLDAYCGIGTIGLTASDKARQVVGVEVNRDAVRDAIGN--AKH-NGVKNARFFAADATAW 296 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCR 330 +R + + D+ IF+DPPR G A + V A I+Y+SCNP+++ R Sbjct: 297 IREAADAGQKADV---------IFMDPPREGSTPAFLESVARMAPKRIVYVSCNPETMAR 347 Query: 331 DLSILS-TTHTIERLALFDQFPYTRHMECGVLLVR 364 DL++L+ + E D FP++ H E LVR Sbjct: 348 DLALLTQKGYRAEGFTPVDMFPHSAHCEVVGSLVR 382 >gi|116627537|ref|YP_820156.1| tRNA methyltransferase, TrmA family [Streptococcus thermophilus LMD-9] gi|116100814|gb|ABJ65960.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus thermophilus LMD-9] gi|312278056|gb|ADQ62713.1| 23S rRNA (Uracil-5-)-methyltransferase RumA [Streptococcus thermophilus ND03] Length = 453 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 47/155 (30%), Positives = 74/155 (47%), Gaps = 15/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ Y G G L A+ V VE+ + +VE A+ N N + N V S++ A Sbjct: 308 VIDAYSGIGTIGLSFAKQVREVYGVEVIETAVEDAKKNAERNGITNAHYVANSAE---NA 364 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330 M + + D+ I VDPPR GL ++ + V P I Y+SCNP ++ R Sbjct: 365 MAKWSQDGIKPDV---------IIVDPPRKGLTESFIKASVAMQPEKITYVSCNPATMAR 415 Query: 331 DLS-ILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D+ + ++++ D FP T H+EC LL R Sbjct: 416 DIKRYQELGYELKKVQPVDLFPQTHHIECVGLLTR 450 >gi|330718855|ref|ZP_08313455.1| tRNA (uracil-5-)-methyltransferase related enzyme [Leuconostoc fallax KCTC 3537] Length = 465 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 57/191 (29%), Positives = 88/191 (46%), Gaps = 28/191 (14%) Query: 185 NSFTQPNAGINVHMLEWVLAATKG---IQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241 NSF Q N + + LAA K Q +++ Y G G +L +A +V VEI + Sbjct: 291 NSFYQVNP--QTTSVLYQLAADKAQLKPQDVVVDAYSGIGTITLSIANRVKKVYGVEIVQ 348 Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301 +V A+ N N ++NV + + E ++ + +FVDPPR Sbjct: 349 QAVVDAQLNAKNNQISNVSFIAKDAPE------------QMAQWAAEGLKPDVVFVDPPR 396 Query: 302 SGLDDATVGMVQAYPHI-----LYISCNPDSLCRDLS--ILSTTHTIERLALFDQFPYTR 354 GL T +++A ++ +YISCNP +L RD + I + H + DQFP T Sbjct: 397 KGL---TEDLIEAISNMDTKTFVYISCNPATLARDAAQIIAAGYHIDGDIQPLDQFPQTT 453 Query: 355 HMECGVLLVRK 365 H+E V + RK Sbjct: 454 HVET-VAVFRK 463 >gi|325970639|ref|YP_004246830.1| (uracil-5)-methyltransferase [Spirochaeta sp. Buddy] gi|324025877|gb|ADY12636.1| (Uracil-5)-methyltransferase [Spirochaeta sp. Buddy] Length = 383 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 63/237 (26%), Positives = 115/237 (48%), Gaps = 30/237 (12%) Query: 133 ECAIRLRDALHARKYQ-IQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPN 191 E A RL A H K +++ A++ +I L +D+ +++ + + F Q N Sbjct: 171 EAARRLMFANHGGKTDYLEVPAFASEDEISL----LDKEISITVGSKRFFVTSEVFFQSN 226 Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251 + + ++V A++ I +++LY G G FS LA+ R++AVE K + + Sbjct: 227 HFLTASLGDYV--ASQAIGQTVMDLYSGVGTFSAFLAQPLRRLIAVEKQKQCIA-----L 279 Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311 A H+ + FT A+ + + + I + T+ VDPPR+GL++ + Sbjct: 280 AKKHLTGCEF-------FTDAVEL---WAKRQAIAV-----DTVVVDPPRTGLEETVPSL 324 Query: 312 VQAYP--HILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 + ++ ++Y+SCN +L RDL S +T + +FD +P T H E V+L R+ Sbjct: 325 IASWAPKRVIYVSCNSVTLARDLQRFASEGYTTTTVKMFDLYPQTFHHEVVVVLDRR 381 >gi|315052774|ref|XP_003175761.1| hypothetical protein MGYG_03282 [Arthroderma gypseum CBS 118893] gi|311341076|gb|EFR00279.1| hypothetical protein MGYG_03282 [Arthroderma gypseum CBS 118893] Length = 595 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 46/159 (28%), Positives = 75/159 (47%), Gaps = 20/159 (12%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 LL+ YCG+G F++VL+ F L +++A S++ AR N + V N + Sbjct: 443 LLDAYCGSGLFTIVLSGTFRSSLGIDVAASSIKCARENAKLSKVPNTGFAAADAAAL--- 499 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330 KD+ + + + +DPPR G D + + AY +LY+SCN + R Sbjct: 500 ---------FKDVPYPADQ-TLLVIDPPRKGCDTNFLNQLLAYGPTRVLYVSCNVHTQAR 549 Query: 331 DLSIL-----STTHTIERLALFDQFPYTRHMECGVLLVR 364 D+ +L + IE + FD FP T H+E +L + Sbjct: 550 DVGVLVEGKNGVRYDIESIRGFDFFPQTSHVESVAVLTK 588 >gi|304410535|ref|ZP_07392153.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Shewanella baltica OS183] gi|307304628|ref|ZP_07584378.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Shewanella baltica BA175] gi|304351019|gb|EFM15419.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Shewanella baltica OS183] gi|306912030|gb|EFN42454.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Shewanella baltica BA175] Length = 390 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 51/186 (27%), Positives = 84/186 (45%), Gaps = 23/186 (12%) Query: 185 NSFTQPNAGINVHML----EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240 SF Q N + + EWV + L +L+CG G F L A + +EI Sbjct: 221 KSFFQTNPQVAAQLYQTAREWVAEFSPR---SLWDLFCGVGGFGLHCASKDITLTGIEIE 277 Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300 ++ A+ + + NV+ + + S +F + + + I V+PP Sbjct: 278 AEAIACAQMSAQMMGLENVQFMALDSTDFAKGKSA-------------ADKPDLIIVNPP 324 Query: 301 RSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMEC 358 R G+ +A + + ILY SCNP +L +DL + H + ++ LFD FP+T H E Sbjct: 325 RRGIGEALCQSLSEFAPKAILYSSCNPKTLAKDLEHIQGYH-LTKVQLFDLFPHTDHFEV 383 Query: 359 GVLLVR 364 V+LV+ Sbjct: 384 LVMLVK 389 >gi|325832711|ref|ZP_08165474.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Eggerthella sp. HGA1] gi|325485850|gb|EGC88311.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Eggerthella sp. HGA1] Length = 525 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 58/194 (29%), Positives = 83/194 (42%), Gaps = 19/194 (9%) Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDR-V 234 L +R SF Q NA + +L G G ++ YCG G LV A+ R V Sbjct: 249 LSFRISSQSFYQVNA-VQTEVLYERAIDLAGFTGSETAIDAYCGTGTIGLVAAKRGARQV 307 Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294 + V+ +V AR N N V N + + F MR D+ Sbjct: 308 IGVDTVASAVRDARENAKHNGVENARFAVGDAGAF---MRERAAAGDAVDV--------- 355 Query: 295 IFVDPPRSGLDDA--TVGMVQAYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFP 351 + +DPPR+G + + A I+YISCNP + RDL+ L + + + D FP Sbjct: 356 LLMDPPRAGSSEEFLAAAVTLAPRRIVYISCNPTTQVRDLAFLRQRGYAVRTVQPVDMFP 415 Query: 352 YTRHMECGVLLVRK 365 +T H+E LL RK Sbjct: 416 HTDHIETVALLSRK 429 >gi|288928551|ref|ZP_06422398.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella sp. oral taxon 317 str. F0108] gi|288331385|gb|EFC69969.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella sp. oral taxon 317 str. F0108] Length = 479 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 52/184 (28%), Positives = 82/184 (44%), Gaps = 16/184 (8%) Query: 186 SFTQPNAGINVHMLEWV--LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 SF Q N H+ E A G + + +LY G G + +AR +V+ VE + Sbjct: 307 SFYQTNTQQAYHLYEVARRFANLSGTE-IVYDLYTGTGTIANFVARQAKKVVGVEYVPEA 365 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 + A+ N N + N K+ D ++ + I DPPR+G Sbjct: 366 IADAKVNSELNGIGNTTFYAGDMKDILN-----------DDFIANNGQPDVIITDPPRAG 414 Query: 304 LD-DATVGMVQAYPH-ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVL 361 + D +++A P I+Y+SCNP + RDL L + + + D FP+T H+E VL Sbjct: 415 MHADVIETIIRANPQRIVYVSCNPATQARDLIALDERYAVTAVQPVDMFPHTPHVENVVL 474 Query: 362 LVRK 365 L R+ Sbjct: 475 LERR 478 >gi|295836075|ref|ZP_06823008.1| tRNA (Uracil-5-)-methyltransferase [Streptomyces sp. SPB74] gi|197695167|gb|EDY42100.1| tRNA (Uracil-5-)-methyltransferase [Streptomyces sp. SPB74] Length = 447 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 54/161 (33%), Positives = 81/161 (50%), Gaps = 24/161 (14%) Query: 214 LELYCGNGNFSLVLARHFDR---VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270 L+LYCG G F+ LA VL +E +K +VE AR+N+A + VR+ + Sbjct: 302 LDLYCGVGLFAGALADRVGEKGAVLGIETSKRAVEDARHNLA-----DFPRVRVEQGKVD 356 Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSL 328 Q + R + + D+ I +DPPR+G +TV + P I YI+C+P +L Sbjct: 357 QILPR----TGITETDL-------IVLDPPRAGAGKSTVRHLTTLTPRRIAYIACDPAAL 405 Query: 329 CRDLS-ILSTTHTIERLALFDQFPYTRHMECGVLLVRKPSG 368 RDL + + L FD FP T+H EC +L +P+G Sbjct: 406 SRDLKHFAENGYRVRVLRAFDLFPMTQHFECVAIL--EPAG 444 >gi|189463386|ref|ZP_03012171.1| hypothetical protein BACCOP_04105 [Bacteroides coprocola DSM 17136] gi|189429815|gb|EDU98799.1| hypothetical protein BACCOP_04105 [Bacteroides coprocola DSM 17136] Length = 489 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 54/185 (29%), Positives = 88/185 (47%), Gaps = 18/185 (9%) Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDLL--ELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 SF Q N+ + L V G+ G+ L +LY G G + ++R +V+ +E + Sbjct: 318 SFYQTNSE-QAYNLYKVARNFAGLTGNELVYDLYTGTGTIANFVSRQARKVIGIEYVPEA 376 Query: 244 VEAARYNIAANHVNNVKIVRMSSKE-FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302 +E A+ N N + N K+ TQ I+ H R I DPPR+ Sbjct: 377 IEDAKVNSQINGIENTLFYAGDMKDILTQDF-----------INEHG-RPDVIITDPPRA 424 Query: 303 GLDDATVGMVQ-AYPH-ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360 G+ + + ++ A P I+Y+SCNP + RDL +L + + + D FP+T H+E V Sbjct: 425 GMHNDVIDVILFAEPKRIVYVSCNPATQARDLQLLDAKYKVMAVQPVDMFPHTHHVENVV 484 Query: 361 LLVRK 365 LL ++ Sbjct: 485 LLEKR 489 >gi|189501475|ref|YP_001957192.1| TrmA family RNA methyltransferase [Candidatus Amoebophilus asiaticus 5a2] gi|189496916|gb|ACE05463.1| RNA methyltransferase, TrmA family [Candidatus Amoebophilus asiaticus 5a2] Length = 468 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 53/184 (28%), Positives = 88/184 (47%), Gaps = 18/184 (9%) Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDLL--ELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 SF Q N+ +L +A +QG L +LY G G + LAR +V+ +E+ + + Sbjct: 296 SFFQTNS-TQAKVLYQTVADLANLQGHELVYDLYTGVGTIAHFLARKARQVVGIEMIESA 354 Query: 244 VEAARYNIAANHVNNVKIVRMSSKE-FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302 ++ A+ N N ++NV K+ F + + +E R I DPPR+ Sbjct: 355 IKDAQINAQLNQLSNVSFWLGDMKDIFNEELLKE------------CGRPDIIVTDPPRA 402 Query: 303 GL-DDATVGMVQAYPH-ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360 G+ D ++Q P I+Y+SCNP + RD+ L + + D FP+T H+E Sbjct: 403 GMHPDVVQQLLQVAPEKIIYVSCNPATQARDIHDLQDRYVLTHAQPIDMFPHTSHVENVA 462 Query: 361 LLVR 364 +LV+ Sbjct: 463 VLVK 466 >gi|313674919|ref|YP_004052915.1| 23S rRNA m(5)u-1939 methyltransferase [Marivirga tractuosa DSM 4126] gi|312941617|gb|ADR20807.1| 23S rRNA m(5)U-1939 methyltransferase [Marivirga tractuosa DSM 4126] Length = 466 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 49/181 (27%), Positives = 83/181 (45%), Gaps = 16/181 (8%) Query: 186 SFTQPNA--GINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 SF Q N+ ++ + A KG + + +LY G G + LA+ +V+ VE + Sbjct: 295 SFYQTNSDQAYELYKVARDFANLKG-EETVYDLYTGTGTIANFLAKSAKKVIGVEYVTEA 353 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 +E A+ N N + N + K+ FN + + + I DPPR+G Sbjct: 354 IEDAKVNSKLNEIENTEFFSGDMKDV---------FN--DEFLVEHGKADVIITDPPRAG 402 Query: 304 LDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVL 361 + + + I+Y+SCNP + RDL++L + + ++ D FP T H+E VL Sbjct: 403 MHPDVIKTLLNIGAEKIVYVSCNPATQARDLALLDEKYKVTKVQPVDMFPQTHHVENVVL 462 Query: 362 L 362 L Sbjct: 463 L 463 >gi|282900616|ref|ZP_06308558.1| 23S rRNA methyltransferase/RumA [Cylindrospermopsis raciborskii CS-505] gi|281194416|gb|EFA69371.1| 23S rRNA methyltransferase/RumA [Cylindrospermopsis raciborskii CS-505] Length = 455 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 51/169 (30%), Positives = 83/169 (49%), Gaps = 21/169 (12%) Query: 202 VLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259 V+ + +QGD L++ YCG G +L LA+ + + +EI +VE A YN N + N Sbjct: 302 VIQSQLNLQGDEILVDAYCGIGTLTLPLAKQARQTIGLEIQPAAVEQAIYNAQHNGITNA 361 Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-H 317 K + ++ + + L DI + +DPPR G + + +++ P Sbjct: 362 KFQIGAVEDILP------KLDTLPDI---------VLLDPPRKGCEPIVLQSLLKLKPKK 406 Query: 318 ILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTRHMECGVLLVR 364 I YISC +L RDLS+L S + ++++ D FP T H+E L R Sbjct: 407 IAYISCKASTLARDLSLLCASGEYKLKKVQPADFFPQTPHVETVAFLER 455 >gi|294461082|gb|ADE76108.1| unknown [Picea sitchensis] Length = 575 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 55/211 (26%), Positives = 90/211 (42%), Gaps = 30/211 (14%) Query: 168 DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD----LLELYCGNGNF 223 + +T R L++ NSF Q N L ++ ++GD +L+L+CG G Sbjct: 376 NSTITECLRGLVFEISANSFFQTNT-YQAEKLYQLIEEAANLRGDGSEIVLDLFCGTGTI 434 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 L LA+ V E+ +V AR N N + N K + E + N++ Sbjct: 435 GLTLAKKVKNVYGYEVVPQAVADARRNAERNDIQNAKFI-------------EGDLNKIG 481 Query: 284 DIDIHSYRFKTIFV-DPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDL-------- 332 D + + I + DP R G+ + + I+Y+SCNP + RDL Sbjct: 482 DDFGNEFPCPDIVITDPNRPGMHTKLIRFLLKLRASRIIYVSCNPATCARDLDYLCHGLP 541 Query: 333 -SILSTTHTIERLALFDQFPYTRHMECGVLL 362 S + + ++ + D FP+T H+EC LL Sbjct: 542 ESNMPGAYQLKGVQPVDMFPHTPHIECVCLL 572 >gi|56459913|ref|YP_155194.1| SAM-dependent methyltransferase related to tRNA (uracil-5-)-methyltransferase [Idiomarina loihiensis L2TR] gi|56178923|gb|AAV81645.1| SAM-dependent methyltransferase related to tRNA (uracil-5-)-methyltransferase [Idiomarina loihiensis L2TR] Length = 450 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 71/250 (28%), Positives = 107/250 (42%), Gaps = 37/250 (14%) Query: 136 IRLRDALHARKYQ-IQLIGRANKTKICLDRDYVDERLTVA---------GRTLIYRQIEN 185 +R+ +AL Q +Q NKT I L + + L A G L ++ Sbjct: 215 LRITEALPGDAMQALQEWQTVNKTNIWLQSENDLQPLAGAAMPFDTSIDGDKLYFQ--PG 272 Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 F Q N GIN M++ + K + + + + G GNFSL LAR VLAVE Sbjct: 273 DFLQVNGGINQRMVQQAMDWLKPEKTQRVYDFFAGIGNFSLPLARRAQSVLAVEGVYRMA 332 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 E R N +N ++N+ + E T + + + D+ +DP R G Sbjct: 333 EQTRINAESNGMDNLSSLSADLNEITAS-----DLGKPADL---------WCLDPARPGA 378 Query: 305 DDATVGMVQAYPH-----ILYISCNPDSLCRDLSILST-----THTIERLALFDQFPYTR 354 + + + P ILY+SC PD+L RD++ + T + I L+ D FP T Sbjct: 379 EGVVKLLHKLKPEHRPQRILYVSCAPDTLARDIAGMLTESKGCNYRIIGLSTVDMFPQTH 438 Query: 355 HMECGVLLVR 364 H+E V L R Sbjct: 439 HIETMVCLER 448 >gi|29377186|ref|NP_816340.1| RNA methyltransferase [Enterococcus faecalis V583] gi|227554196|ref|ZP_03984243.1| tRNA (uracil-5-)-methyltransferase [Enterococcus faecalis HH22] gi|257090896|ref|ZP_05585257.1| tRNA (uracil-5-)-methyltransferase trmA [Enterococcus faecalis CH188] gi|257420102|ref|ZP_05597096.1| tRNA (uracil-5-)-methyltransferase [Enterococcus faecalis T11] gi|312902534|ref|ZP_07761740.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX0635] gi|50401756|sp|Q830R6|Y2706_ENTFA RecName: Full=Uncharacterized RNA methyltransferase EF_2706 gi|29344652|gb|AAO82410.1| RNA methyltransferase, TrmA family [Enterococcus faecalis V583] gi|227176695|gb|EEI57667.1| tRNA (uracil-5-)-methyltransferase [Enterococcus faecalis HH22] gi|256999708|gb|EEU86228.1| tRNA (uracil-5-)-methyltransferase trmA [Enterococcus faecalis CH188] gi|257161930|gb|EEU91890.1| tRNA (uracil-5-)-methyltransferase [Enterococcus faecalis T11] gi|310634204|gb|EFQ17487.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX0635] gi|315573827|gb|EFU86018.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX0309B] gi|315580263|gb|EFU92454.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX0309A] Length = 456 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 45/155 (29%), Positives = 72/155 (46%), Gaps = 14/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G L LA+ +V ++ +++ AR+N V N ++++ Sbjct: 314 VVDAYCGVGTIGLSLAKQAHQVRGMDTIPAAIDDARFNAKRLGVTNTHYAVGTAEDLLPK 373 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA--TVGMVQAYPHILYISCNPDSLCR 330 +E ++ I VDPPR+GLD T + Q ++YISCN +L R Sbjct: 374 WFKE------------GFKPDAIVVDPPRTGLDRKLLTALLKQPPKKMVYISCNVSTLAR 421 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 DL L+ + ++ L D FP T E V L RK Sbjct: 422 DLVQLAKVYQVDYLQSVDMFPQTARCEVVVKLTRK 456 >gi|183602485|ref|ZP_02963851.1| hypothetical RNA methyltransferase [Bifidobacterium animalis subsp. lactis HN019] gi|219683201|ref|YP_002469584.1| deoxyribonuclease/rho motif-related TRAM [Bifidobacterium animalis subsp. lactis AD011] gi|241191161|ref|YP_002968555.1| RNA methyltransferase [Bifidobacterium animalis subsp. lactis Bl-04] gi|241196567|ref|YP_002970122.1| RNA methyltransferase [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183218404|gb|EDT89049.1| hypothetical RNA methyltransferase [Bifidobacterium animalis subsp. lactis HN019] gi|219620851|gb|ACL29008.1| deoxyribonuclease/rho motif-related TRAM [Bifidobacterium animalis subsp. lactis AD011] gi|240249553|gb|ACS46493.1| RNA methyltransferase [Bifidobacterium animalis subsp. lactis Bl-04] gi|240251121|gb|ACS48060.1| RNA methyltransferase [Bifidobacterium animalis subsp. lactis DSM 10140] gi|289177269|gb|ADC84515.1| tRNA (Uracil-5-) -methyltransferase [Bifidobacterium animalis subsp. lactis BB-12] gi|295794154|gb|ADG33689.1| RNA methyltransferase [Bifidobacterium animalis subsp. lactis V9] Length = 436 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 64/243 (26%), Positives = 106/243 (43%), Gaps = 33/243 (13%) Query: 138 LRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVH 197 LR A+ R Y I + G+ L E + V G+ Y F Q + + Sbjct: 211 LRKAI-GRNYAIMVDGKVRHGSRALK-----ETIMVDGKPFEYTVDAGGFWQMHREAPMV 264 Query: 198 MLEWVLAATKGIQGD----------LLELYCGNGNFSLVLARHFD---RVLAVEIAKPSV 244 + ++V+ + GD + +LY G+G F+L LA D +++++E AK +V Sbjct: 265 LPQYVIDQIRETPGDRAPRNGRNLVIWDLYSGSGLFTLPLATLLDDRAKLVSIEGAKDAV 324 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AR N+ R + QA+ + KDID + +DPPR+G Sbjct: 325 ANARRNL-----------RNAGIHTVQALCGDVLHTLDKDIDPQRAHPDIVVLDPPRAGA 373 Query: 305 DDATVGMV--QAYPHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVL 361 + P ++YI+C+P SL RD + L+ + I +A FD +P T H+E + Sbjct: 374 KAKVCHKIANSGAPIVVYIACDPASLARDTATLTEHGYRIHSIAAFDIYPQTHHVETVAV 433 Query: 362 LVR 364 V+ Sbjct: 434 FVK 436 >gi|255974885|ref|ZP_05425471.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis T2] gi|256616789|ref|ZP_05473635.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis ATCC 4200] gi|256854009|ref|ZP_05559374.1| RNA methyltransferase [Enterococcus faecalis T8] gi|256961043|ref|ZP_05565214.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis Merz96] gi|257081727|ref|ZP_05576088.1| tRNA (uracil-5-)-methyltransferase [Enterococcus faecalis E1Sol] gi|293384567|ref|ZP_06630433.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis R712] gi|293386796|ref|ZP_06631367.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis S613] gi|307278742|ref|ZP_07559809.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX0860] gi|307290285|ref|ZP_07570201.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX0411] gi|312906393|ref|ZP_07765401.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis DAPTO 512] gi|312979448|ref|ZP_07791136.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis DAPTO 516] gi|255967757|gb|EET98379.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis T2] gi|256596316|gb|EEU15492.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis ATCC 4200] gi|256710952|gb|EEU25995.1| RNA methyltransferase [Enterococcus faecalis T8] gi|256951539|gb|EEU68171.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis Merz96] gi|256989757|gb|EEU77059.1| tRNA (uracil-5-)-methyltransferase [Enterococcus faecalis E1Sol] gi|291078113|gb|EFE15477.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis R712] gi|291083799|gb|EFE20762.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis S613] gi|306498706|gb|EFM68207.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX0411] gi|306504603|gb|EFM73806.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX0860] gi|310627547|gb|EFQ10830.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis DAPTO 512] gi|311287819|gb|EFQ66375.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis DAPTO 516] gi|315030469|gb|EFT42401.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX4000] gi|315032560|gb|EFT44492.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX0017] gi|315170491|gb|EFU14508.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX1342] Length = 456 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 45/155 (29%), Positives = 72/155 (46%), Gaps = 14/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G L LA+ +V ++ +++ AR+N V N ++++ Sbjct: 314 VVDAYCGVGTIGLSLAKQAHQVRGMDTIPAAIDDARFNAKRLGVTNTHYAVGTAEDLLPK 373 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA--TVGMVQAYPHILYISCNPDSLCR 330 +E ++ I VDPPR+GLD T + Q ++YISCN +L R Sbjct: 374 WFKE------------GFKPDAIVVDPPRTGLDRKLLTALLKQPPKKMVYISCNVSTLAR 421 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 DL L+ + ++ L D FP T E V L RK Sbjct: 422 DLVQLAKVYQVDYLQSVDMFPQTARCEVVVKLTRK 456 >gi|219667634|ref|YP_002458069.1| RNA methyltransferase, TrmA family [Desulfitobacterium hafniense DCB-2] gi|219537894|gb|ACL19633.1| RNA methyltransferase, TrmA family [Desulfitobacterium hafniense DCB-2] Length = 446 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 48/169 (28%), Positives = 84/169 (49%), Gaps = 21/169 (12%) Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVN 257 +L+W +T+ + + +LYCG G +L LA +V +E +VE AR N N VN Sbjct: 289 VLDWAELSTEKV---VWDLYCGIGTITLALAAKAKKVWGIEENPYAVEDARENAKRNRVN 345 Query: 258 NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP 316 NV+ + + E F ++ D + +DPPR+G + G+++ P Sbjct: 346 NVEFM---------VGKAEDTFQQIGDYP------HIVVLDPPRAGAHRKVLEGLLELKP 390 Query: 317 -HILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLV 363 I+Y+SC+ +L RDL IL + + + + D FP+T +E +++ Sbjct: 391 EQIIYVSCDAGTLARDLGILQNGGYRVVEVQPVDMFPWTVSVESIIVMT 439 >gi|307276947|ref|ZP_07558057.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX2134] gi|306506370|gb|EFM75530.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX2134] Length = 456 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 45/155 (29%), Positives = 72/155 (46%), Gaps = 14/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G L LA+ +V ++ +++ AR+N V N ++++ Sbjct: 314 VVDAYCGVGTIGLSLAKQAHQVRGMDTIPAAIDDARFNAKRLGVTNTHYAVGTAEDLLPK 373 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA--TVGMVQAYPHILYISCNPDSLCR 330 +E ++ I VDPPR+GLD T + Q ++YISCN +L R Sbjct: 374 WFKE------------GFKPDAIVVDPPRTGLDRKLLTALLKQPPKKMVYISCNVSTLAR 421 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 DL L+ + ++ L D FP T E V L RK Sbjct: 422 DLVQLAKVYQVDYLQSVDMFPQTARCEVVVKLTRK 456 >gi|315162126|gb|EFU06143.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX0645] gi|315168692|gb|EFU12709.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX1341] Length = 456 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 45/155 (29%), Positives = 72/155 (46%), Gaps = 14/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G L LA+ +V ++ +++ AR+N V N ++++ Sbjct: 314 VVDAYCGVGTIGLSLAKQAHQVRGMDTIPAAIDDARFNAKRLGVTNTHYAVGTAEDLLPK 373 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA--TVGMVQAYPHILYISCNPDSLCR 330 +E ++ I VDPPR+GLD T + Q ++YISCN +L R Sbjct: 374 WFKE------------GFKPDAIVVDPPRTGLDRKLLTALLKQPPKKMVYISCNVSTLAR 421 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 DL L+ + ++ L D FP T E V L RK Sbjct: 422 DLVQLAKVYQVDYLQSVDMFPQTARCEVVVKLTRK 456 >gi|311280257|ref|YP_003942488.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Enterobacter cloacae SCF1] gi|308749452|gb|ADO49204.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Enterobacter cloacae SCF1] Length = 376 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 45/155 (29%), Positives = 74/155 (47%), Gaps = 18/155 (11%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + +L+CG G F L A + +EIA ++ A+ + A + N++ + S +F Sbjct: 237 MWDLFCGVGGFGLHCATPAMTLTGIEIAPEAIACAKQSAAELGLTNLRFQALDSTQFAVG 296 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCR 330 + V+PPR G+ +A + A +I+Y SCN S+ + Sbjct: 297 QGEAPGL---------------VLVNPPRRGIGEALCAYLDRMAPDYIVYSSCNAQSMAK 341 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 D++ L + IER+ LFD FP+T H E LLVR+ Sbjct: 342 DIARLPH-YRIERVQLFDMFPHTAHYEVLTLLVRE 375 >gi|127511735|ref|YP_001092932.1| 23S rRNA methyluridine methyltransferase [Shewanella loihica PV-4] gi|167012646|sp|A3QB25|RUMB_SHELP RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName: Full=23S rRNA(M-5-U747)-methyltransferase gi|126637030|gb|ABO22673.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Shewanella loihica PV-4] Length = 379 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 44/152 (28%), Positives = 72/152 (47%), Gaps = 16/152 (10%) Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274 +L+CG G F L A + +EI ++ A+ + ++ V+ + S F R Sbjct: 239 DLFCGVGGFGLHCASKEVALTGIEIEAEAIACAKMSAETLGLDKVRFTALDSTSFASDSR 298 Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDL 332 E + + I V+PPR G+ +A + + ILY SCNP +L +DL Sbjct: 299 GEE-------------KPELIIVNPPRRGIGEALCHSLSEFAPKAILYSSCNPKTLAKDL 345 Query: 333 SILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 +S + + ++ LFD FP+T H E V+L R Sbjct: 346 HCIS-GYRVTKVQLFDMFPHTDHFEVLVMLQR 376 >gi|300114883|ref|YP_003761458.1| TrmA family RNA methyltransferase [Nitrosococcus watsonii C-113] gi|299540820|gb|ADJ29137.1| RNA methyltransferase, TrmA family [Nitrosococcus watsonii C-113] Length = 446 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 74/234 (31%), Positives = 106/234 (45%), Gaps = 31/234 (13%) Query: 148 QIQLIGRANKTKICLDRDYVD--ERLTVAGRTLIYRQ--------IENSFTQPNAGINVH 197 Q+ G+A+K +I L + L A L Y Q + FTQ N +N Sbjct: 223 QLMAFGQAHKLQIYLQGGGAETVRLLWPAEARLSYSQFGELEMIFLPTDFTQVNREVNTK 282 Query: 198 MLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV 256 M++ VLA + G+ +L+L+CG GNF+L LA V+ +E V AR N A N + Sbjct: 283 MVQQVLALLEIASGERVLDLFCGVGNFTLPLAMAGAEVVGIEGDAGLVARARANAAHNRL 342 Query: 257 NNVK--IVRMSSKEFT-QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ 313 NV+ + ++ E+T A RE F +DPPRSG A M + Sbjct: 343 ENVRFDVADLNGLEWTHHAWARE--------------GFSKALLDPPRSGALLAVQQMSK 388 Query: 314 A-YPHILYISCNPDSLCRDLSILST--THTIERLALFDQFPYTRHMECGVLLVR 364 I+YISCNP +L RD L + + + D FP+T H+E L R Sbjct: 389 LRVQRIVYISCNPATLARDAGELVNRQGYRLRYAGVIDMFPHTTHVETLALFER 442 >gi|302656253|ref|XP_003019882.1| hypothetical protein TRV_06080 [Trichophyton verrucosum HKI 0517] gi|291183655|gb|EFE39258.1| hypothetical protein TRV_06080 [Trichophyton verrucosum HKI 0517] Length = 544 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 46/159 (28%), Positives = 76/159 (47%), Gaps = 20/159 (12%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 LL+ YCG+G F++VL+ F L +++A S++ AR N ++V N + Sbjct: 392 LLDAYCGSGLFTIVLSGTFRSSLGIDVAASSIKCARENAKLSNVPNTGFAAADAAAL--- 448 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330 KD+ + + + +DPPR G D + + AY +LY+SCN + R Sbjct: 449 ---------FKDVPYPADQ-TLLVIDPPRKGCDTNFLNQLLAYGPTRVLYVSCNVHTQAR 498 Query: 331 DLSIL-----STTHTIERLALFDQFPYTRHMECGVLLVR 364 D+ +L + IE + FD FP T H+E +L + Sbjct: 499 DVGVLVEGKNGIRYDIESIRGFDFFPQTSHVESVAVLTK 537 >gi|225861693|ref|YP_002743202.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae Taiwan19F-14] gi|298229216|ref|ZP_06962897.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae str. Canada MDR_19F] gi|298255172|ref|ZP_06978758.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae str. Canada MDR_19A] gi|298503634|ref|YP_003725574.1| tRNA (uracil-5-)-methyltransferase [Streptococcus pneumoniae TCH8431/19A] gi|225727633|gb|ACO23484.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae Taiwan19F-14] gi|298239229|gb|ADI70360.1| tRNA (uracil-5-)-methyltransferase [Streptococcus pneumoniae TCH8431/19A] Length = 451 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 42/155 (27%), Positives = 70/155 (45%), Gaps = 14/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L++ YCG G A+ + ++I ++E A+ N +N +++E Sbjct: 308 LIDAYCGVGTIGFAFAKKVKTLRGMDIIPEAIEDAKRNAKRMGFDNTHYEAGTAEEIIPR 367 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330 +E YR + +DPPR+GLDD + + Y ++YISCN +L R Sbjct: 368 WYKE------------GYRADALIIDPPRTGLDDKLLDTILTYVPEKMVYISCNVSTLAR 415 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 DL L + + + D FP+T E V L++K Sbjct: 416 DLVRLVEVYDLHYIQSVDMFPHTARTEAVVKLIKK 450 >gi|76799178|ref|ZP_00781359.1| RNA methyltransferase, TrmA family [Streptococcus agalactiae 18RS21] gi|76585471|gb|EAO62048.1| RNA methyltransferase, TrmA family [Streptococcus agalactiae 18RS21] Length = 252 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 45/156 (28%), Positives = 69/156 (44%), Gaps = 14/156 (8%) Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271 DL++ YCG G L A V ++I +++ A+ N N + Sbjct: 108 DLIDAYCGVGTIGLAFAGKVKSVRGMDIIPEAIQDAKENALYMGFTNTHY---------E 158 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLC 329 A + E R +R + VDPPR+GLDD + + P ++Y+SCN +L Sbjct: 159 AGKAEDIIPRWYS---EGFRANALIVDPPRTGLDDKLLNTILKMPPEKMVYVSCNTSTLA 215 Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 RDL L+ + + + D FP+T E V L RK Sbjct: 216 RDLVTLTKVYHVHYIQSVDMFPHTARTEAVVKLQRK 251 >gi|282862383|ref|ZP_06271445.1| deoxyribonuclease/rho motif-related TRAM [Streptomyces sp. ACTE] gi|282562722|gb|EFB68262.1| deoxyribonuclease/rho motif-related TRAM [Streptomyces sp. ACTE] Length = 447 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 48/155 (30%), Positives = 76/155 (49%), Gaps = 22/155 (14%) Query: 214 LELYCGNGNFSLVLARHFDR---VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270 L+LYCG G F+ + + VL +E K +VE AR+N+ ++ VR+ + Sbjct: 302 LDLYCGVGLFAGAIGQRIGEKGAVLGIESGKRAVEDARHNL-----KDLDRVRIEHGKVD 356 Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSL 328 Q + R + + D+ I +DPPR+G ATV + I Y++C+P +L Sbjct: 357 QVLPR----TGITECDL-------IVLDPPRAGAGKATVKHLSGLGARRIAYVACDPAAL 405 Query: 329 CRDLSIL-STTHTIERLALFDQFPYTRHMECGVLL 362 RDL+ + + L FD FP T H+EC +L Sbjct: 406 ARDLAYFRDGGYKVRTLRAFDLFPMTHHVECVAIL 440 >gi|260770022|ref|ZP_05878955.1| RNA methyltransferase TrmA family [Vibrio furnissii CIP 102972] gi|260615360|gb|EEX40546.1| RNA methyltransferase TrmA family [Vibrio furnissii CIP 102972] Length = 377 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 44/154 (28%), Positives = 74/154 (48%), Gaps = 18/154 (11%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + +L+CG G F+L A V +EI ++ +A+ + +A ++N+ + S +F+ Sbjct: 238 MWDLFCGVGGFALHCASLTTAVTGIEIEPEAIASAKRSASAMGIDNLSFAALDSAQFSLG 297 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCR 330 + + V+PPR GL DA + A HI+Y SCNP ++ Sbjct: 298 QDVAPDL---------------VLVNPPRRGLGDALTQQLAMLAPKHIIYSSCNPLTMKN 342 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D+ L+ + +L FD FP+T H E +LL R Sbjct: 343 DVEQLTDYRAV-KLQWFDMFPHTEHAEVLLLLER 375 >gi|327535927|gb|AEA94761.1| 23S rRNA (uracil-5-)-methyltransferase [Enterococcus faecalis OG1RF] Length = 456 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 45/155 (29%), Positives = 72/155 (46%), Gaps = 14/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G L LA+ +V ++ +++ AR+N V N ++++ Sbjct: 314 VVDAYCGVGTIGLSLAKQAHQVRGMDTIPAAIDDARFNAKRLGVTNTHYAVGTAEDLLPK 373 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA--TVGMVQAYPHILYISCNPDSLCR 330 +E ++ I VDPPR+GLD T + Q ++YISCN +L R Sbjct: 374 WFKE------------GFKPDAIVVDPPRTGLDRKLLTALLKQPPKKMVYISCNVSTLAR 421 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 DL L+ + ++ L D FP T E V L RK Sbjct: 422 DLVQLAKVYQVDYLQSVDMFPQTARCEVVVKLTRK 456 >gi|291614756|ref|YP_003524913.1| RNA methyltransferase, TrmA family [Sideroxydans lithotrophicus ES-1] gi|291584868|gb|ADE12526.1| RNA methyltransferase, TrmA family [Sideroxydans lithotrophicus ES-1] Length = 432 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 60/225 (26%), Positives = 101/225 (44%), Gaps = 25/225 (11%) Query: 144 ARKYQIQLIGRANKTKIC-----LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHM 198 A K+Q+Q + + LD + L G T+ + E FTQ N+ +N M Sbjct: 215 ADKHQVQFWTQTKGPETVAPFYPLDAPSLSYSLPEFGITMPFAPTE--FTQVNSDMNRLM 272 Query: 199 LEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVN 257 + + G+ + + +CG GNF+L +AR +VL +E + V AR N N ++ Sbjct: 273 VSRAMRLLAPQAGERIADFFCGLGNFTLPIARSGAQVLGIEGSDALVRRARQNAEYNGLS 332 Query: 258 -NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD--ATVGMVQA 314 N M+ E +A + RF VDPPR G + ++ A Sbjct: 333 GNTTFQMMNLFEMDEATL------------ARAGRFDKWLVDPPRDGAIELMKSISEATA 380 Query: 315 YPHILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTRHME 357 I+Y+SC+P +L RD +L + ++++ + + FP T H+E Sbjct: 381 PRRIVYVSCSPSTLSRDAEVLVHAKGYSLKAAGVMNMFPQTSHVE 425 >gi|166033314|ref|ZP_02236143.1| hypothetical protein DORFOR_03040 [Dorea formicigenerans ATCC 27755] gi|166027671|gb|EDR46428.1| hypothetical protein DORFOR_03040 [Dorea formicigenerans ATCC 27755] Length = 461 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 58/232 (25%), Positives = 106/232 (45%), Gaps = 29/232 (12%) Query: 133 ECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNA 192 E + ++ LH + + + + T++ +DY E L L ++ SF Q N+ Sbjct: 242 ELSGKIVGILHTKNDSLADVVKDEGTEVLFGQDYFYEELL----GLKFKITPFSFFQTNS 297 Query: 193 -GINV---HMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248 G V E++ + + + +LY G G + +LA +V+ VEI + +VEAA+ Sbjct: 298 LGAEVLYEKAREYIGDTNEKV---VFDLYSGTGTIAQILAPVAKKVVGVEIVEEAVEAAK 354 Query: 249 YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDAT 308 N N ++N ++ E + D+ I +DPPR G++ Sbjct: 355 VNAKLNGLDNCTFWA------GDVLKVIDELGEVPDL---------IMLDPPRDGVNPKA 399 Query: 309 VGMVQAYP--HILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHME 357 + + + ++YI+C P SL RDL ++ + +E++A D FP T H+E Sbjct: 400 LMKILNFGVDRLVYIACKPTSLARDLEMIQGRGYKVEKIACVDLFPNTVHVE 451 >gi|116617569|ref|YP_817940.1| tRNA (uracil-5-)-methyltransferase related enzyme [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116096416|gb|ABJ61567.1| 23S rRNA m(5)U-1939 methyltransferase [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 463 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 53/181 (29%), Positives = 86/181 (47%), Gaps = 21/181 (11%) Query: 185 NSFTQPNAGINVHMLEWVLAATKG---IQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241 NSF Q N + + LAA K +++ Y G G + +A +VL VE+ Sbjct: 290 NSFYQVNPQTTEVLYD--LAAQKADLKPTDTVIDAYSGIGTIGISVASRVKKVLGVEVVP 347 Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301 +V A+ N+ N+++N + + + +F + ++ + +FVDPPR Sbjct: 348 GAVADAQLNLQVNNISNAEYILADAP---------VQFKKWQE---QGLKPDVVFVDPPR 395 Query: 302 SGLDDATV-GMVQAYPH-ILYISCNPDSLCRD-LSILSTTHTIERLAL-FDQFPYTRHME 357 GL + + G P I+YISCNP +L RD + I+ + I+ L DQFP T H+E Sbjct: 396 RGLTTSLINGTTDMSPEKIVYISCNPVTLSRDAVEIIENGYHIDGSVLPVDQFPQTSHVE 455 Query: 358 C 358 Sbjct: 456 S 456 >gi|229544908|ref|ZP_04433633.1| tRNA (uracil-5-)-methyltransferase [Enterococcus faecalis TX1322] gi|229309800|gb|EEN75787.1| tRNA (uracil-5-)-methyltransferase [Enterococcus faecalis TX1322] gi|295113655|emb|CBL32292.1| 23S rRNA m(5)U-1939 methyltransferase [Enterococcus sp. 7L76] Length = 456 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 45/155 (29%), Positives = 72/155 (46%), Gaps = 14/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G L LA+ +V ++ +++ AR+N V N ++++ Sbjct: 314 VVDAYCGVGTIGLSLAKQAHQVRGMDTIPAAIDDARFNAKRLGVTNTHYAVGTAEDLLPK 373 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA--TVGMVQAYPHILYISCNPDSLCR 330 +E ++ I VDPPR+GLD T + Q ++YISCN +L R Sbjct: 374 WFKE------------GFKPDAIVVDPPRTGLDRKLLTALLKQPPKKMVYISCNVSTLAR 421 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 DL L+ + ++ L D FP T E V L RK Sbjct: 422 DLVQLAKVYQVDYLQSVDMFPQTARCEVVVKLTRK 456 >gi|229549174|ref|ZP_04437899.1| tRNA (uracil-5-)-methyltransferase [Enterococcus faecalis ATCC 29200] gi|255971891|ref|ZP_05422477.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis T1] gi|256957937|ref|ZP_05562108.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis DS5] gi|257079874|ref|ZP_05574235.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis JH1] gi|257421676|ref|ZP_05598666.1| RNA methyltransferase [Enterococcus faecalis X98] gi|294780400|ref|ZP_06745766.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis PC1.1] gi|300860697|ref|ZP_07106784.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TUSoD Ef11] gi|307269643|ref|ZP_07550978.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX4248] gi|312953733|ref|ZP_07772567.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX0102] gi|229305411|gb|EEN71407.1| tRNA (uracil-5-)-methyltransferase [Enterococcus faecalis ATCC 29200] gi|255962909|gb|EET95385.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis T1] gi|256948433|gb|EEU65065.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis DS5] gi|256987904|gb|EEU75206.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis JH1] gi|257163500|gb|EEU93460.1| RNA methyltransferase [Enterococcus faecalis X98] gi|294452500|gb|EFG20936.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis PC1.1] gi|300849736|gb|EFK77486.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TUSoD Ef11] gi|306514033|gb|EFM82620.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX4248] gi|310628360|gb|EFQ11643.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX0102] gi|315035082|gb|EFT47014.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX0027] gi|315148672|gb|EFT92688.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX4244] gi|315151812|gb|EFT95828.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX0031] gi|315155574|gb|EFT99590.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX0043] gi|315159336|gb|EFU03353.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX0312] gi|323481633|gb|ADX81072.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis 62] gi|329570604|gb|EGG52323.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX1467] Length = 456 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 45/155 (29%), Positives = 72/155 (46%), Gaps = 14/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G L LA+ +V ++ +++ AR+N V N ++++ Sbjct: 314 VVDAYCGVGTIGLSLAKQAHQVRGMDTIPAAIDDARFNAKRLGVTNTHYAVGTAEDLLPK 373 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA--TVGMVQAYPHILYISCNPDSLCR 330 +E ++ I VDPPR+GLD T + Q ++YISCN +L R Sbjct: 374 WFKE------------GFKPDAIVVDPPRTGLDRKLLTALLKQPPKKMVYISCNVSTLAR 421 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 DL L+ + ++ L D FP T E V L RK Sbjct: 422 DLVQLAKVYQVDYLQSVDMFPQTARCEVVVKLTRK 456 >gi|149372775|ref|ZP_01891796.1| putative RNA methyltransferase [unidentified eubacterium SCB49] gi|149354472|gb|EDM43037.1| putative RNA methyltransferase [unidentified eubacterium SCB49] Length = 469 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 46/162 (28%), Positives = 78/162 (48%), Gaps = 15/162 (9%) Query: 208 GIQGDLL--ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265 G+ G+ L +LY G G + +A+ +V+ VE ++ AA+ N N++ N + Sbjct: 319 GLTGEELVYDLYTGTGTIAQFVAKKAKKVIGVESVPDAIIAAKENAERNNITNAEFYVGD 378 Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISC 323 K+ FN ++ H + + DPPR G+ V + P I+Y+SC Sbjct: 379 MKDV---------FNE-DFVNTHG-KADIVITDPPRDGMHKDVVQQLINLNAPKIVYVSC 427 Query: 324 NPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 N + RDL++L + + ++ D FP T H+E VLL R+ Sbjct: 428 NSATQARDLALLDENYKVTKVQPVDMFPQTHHVENVVLLERR 469 >gi|315143898|gb|EFT87914.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX2141] Length = 456 Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 45/155 (29%), Positives = 72/155 (46%), Gaps = 14/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G L LA+ +V ++ +++ AR+N V N ++++ Sbjct: 314 VVDAYCGVGTIGLSLAKQAHQVRGMDTIPAAIDDARFNAKRLGVTNTHYAVGTAEDLLPK 373 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA--TVGMVQAYPHILYISCNPDSLCR 330 +E ++ I VDPPR+GLD T + Q ++YISCN +L R Sbjct: 374 WFKE------------GFKPDAIVVDPPRTGLDRKLLTALLKQPPKKMVYISCNVSTLAR 421 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 DL L+ + ++ L D FP T E V L RK Sbjct: 422 DLVQLAKVYQVDYLQSVDMFPQTARCEVVVKLTRK 456 >gi|313890778|ref|ZP_07824403.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pseudoporcinus SPIN 20026] gi|313120879|gb|EFR43993.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pseudoporcinus SPIN 20026] Length = 453 Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 43/158 (27%), Positives = 73/158 (46%), Gaps = 15/158 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ Y G G L A+ +V VE+ + +V+ AR N N + N + + S++ + Sbjct: 308 VIDAYSGIGTIGLSFAKKVKKVYGVEVIEAAVKDARKNAERNGIRNAEFLVGSAEAAMEK 367 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV--GMVQAYPHILYISCNPDSLCR 330 +E + I VDPPR GL ++ + A I Y+SCNP ++ R Sbjct: 368 WSKE------------GIKPSVILVDPPRKGLTESFIKASAAMAPKKITYVSCNPATMAR 415 Query: 331 DLS-ILSTTHTIERLALFDQFPYTRHMECGVLLVRKPS 367 D+ + + + D FP+T H+EC L+ R S Sbjct: 416 DIKHYQELGYNLIKAQPVDLFPHTHHVECIALIQRVKS 453 >gi|257416880|ref|ZP_05593874.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis AR01/DG] gi|257158708|gb|EEU88668.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis ARO1/DG] Length = 456 Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 45/155 (29%), Positives = 72/155 (46%), Gaps = 14/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G L LA+ +V ++ +++ AR+N V N ++++ Sbjct: 314 VVDAYCGVGTIGLSLAKQAHQVRGMDTIPAAIDDARFNAKRLGVTNTHYAVGTAEDLLPK 373 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA--TVGMVQAYPHILYISCNPDSLCR 330 +E ++ I VDPPR+GLD T + Q ++YISCN +L R Sbjct: 374 WFKE------------GFKPDAIVVDPPRTGLDRKLLTALLKQPPKKMVYISCNVSTLAR 421 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 DL L+ + ++ L D FP T E V L RK Sbjct: 422 DLVQLAKVYQVDYLQSVDMFPQTARCEVVVKLTRK 456 >gi|150019658|ref|YP_001311912.1| RNA methyltransferase [Clostridium beijerinckii NCIMB 8052] gi|149906123|gb|ABR36956.1| RNA methyltransferase, TrmA family [Clostridium beijerinckii NCIMB 8052] Length = 459 Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 93/392 (23%), Positives = 163/392 (41%), Gaps = 49/392 (12%) Query: 4 TLLIDQYEQQLAEKVDRLRQMM-----LAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDL 58 TL+ Y+ QL K +R++ + L+ + I P YR + + I ++L Sbjct: 82 TLMHSNYDSQLKFKYNRVKDCIERIGGLSGDIVKNTIGMEFPYRYRNKGIYSIALTDNEL 141 Query: 59 YHIMFDQQTKERMRIDYFM---PGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTS--- 112 F ++T E + +D + + I ++ M + P + LF + L Sbjct: 142 SMGFFSEKTHEVVDMDKCLIQDEETDKIIKIIRNWMKKYSILPARKDNLFFSEGLIRNVM 201 Query: 113 -----QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYV 167 ++++ +V LI E +R + K IQ I N + + D+ Sbjct: 202 VRNGFKTNEIMVVLITTDKEIPKKEELIKDIRLEVENLKGVIQNISTKNNSLVLGDK--- 258 Query: 168 DERLTVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGD--LLELY 217 +T+ G+ I I SF Q N I +L + GD + + Y Sbjct: 259 --CITLWGQDYISDYIGKYKFNISPLSFFQINP-IQTEVLYNKALEYADLSGDEIVFDAY 315 Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277 CG G +L L+++ +V VEI + +++ A N N ++N + S+E + + Sbjct: 316 CGAGTITLFLSQNARKVYGVEIVEQAIDNAIDNAEINGIDNSEFYVGKSEEVIPELIK-- 373 Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYPH-ILYISCNPDSLCRDLSIL 335 + + I VDPPR G D + + +A P ++Y+SC+P +L RDL L Sbjct: 374 ----------NGIKPDIIVVDPPRKGCDIKLLNAIGEAKPKRVVYVSCDPSTLARDLKHL 423 Query: 336 S--TTHTIERLALFDQFPYTRHMECGVLLVRK 365 TIE + D FP T+H+E LL ++ Sbjct: 424 EGFGFKTIE-VQPVDMFPNTKHVETVALLTKR 454 >gi|315182546|gb|ADT89459.1| 23S rRNA metyluridine methyltransferase [Vibrio furnissii NCTC 11218] Length = 377 Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 44/154 (28%), Positives = 74/154 (48%), Gaps = 18/154 (11%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + +L+CG G F+L A V +EI ++ +A+ + +A ++N+ + S +F+ Sbjct: 238 MWDLFCGVGGFALHCASPSTAVTGIEIEPEAIASAKRSASAMGIDNLSFAALDSAQFSLG 297 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCR 330 + + V+PPR GL DA + A HI+Y SCNP ++ Sbjct: 298 QDVAPDL---------------VLVNPPRRGLGDALTQQLAMLAPKHIIYSSCNPLTMKN 342 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D+ L+ + +L FD FP+T H E +LL R Sbjct: 343 DVEQLTEYRAV-KLQWFDMFPHTDHAEVLLLLER 375 >gi|256763335|ref|ZP_05503915.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis T3] gi|256963815|ref|ZP_05567986.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis HIP11704] gi|307271762|ref|ZP_07553033.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX0855] gi|256684586|gb|EEU24281.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis T3] gi|256954311|gb|EEU70943.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis HIP11704] gi|306511640|gb|EFM80639.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX0855] Length = 456 Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 45/155 (29%), Positives = 72/155 (46%), Gaps = 14/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G L LA+ +V ++ +++ AR+N V N ++++ Sbjct: 314 VVDAYCGVGTIGLSLAKQAHQVRGMDTIPAAIDDARFNAKRLGVTNTHYAVGTAEDLLPK 373 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA--TVGMVQAYPHILYISCNPDSLCR 330 +E ++ I VDPPR+GLD T + Q ++YISCN +L R Sbjct: 374 WFKE------------GFKPDAIVVDPPRTGLDRKLLTALLKQPPKKMVYISCNVSTLAR 421 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 DL L+ + ++ L D FP T E V L RK Sbjct: 422 DLVQLAKVYQVDYLQSVDMFPQTARCEVVVKLTRK 456 >gi|307130763|ref|YP_003882779.1| 23S rRNA m(5)U747 methyltransferase [Dickeya dadantii 3937] gi|306528292|gb|ADM98222.1| 23S rRNA m(5)U747 methyltransferase [Dickeya dadantii 3937] Length = 376 Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 46/156 (29%), Positives = 73/156 (46%), Gaps = 18/156 (11%) Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271 L +L+CG G F L A + +EI+ ++ AR + A + NV + S F Sbjct: 236 SLWDLFCGVGGFGLHCASSDTPLTGIEISPEAIACARRSAAQLGLTNVSFAALDSTRFA- 294 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLC 329 + D+ + V+PPR G+ + A P++LY SCN +S+ Sbjct: 295 -------VGEAQTPDL-------VIVNPPRRGIGAELCDYLSRMAPPYLLYSSCNAESMA 340 Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 RD++ L + I++ LFD FP+T H E LL R+ Sbjct: 341 RDIARLP-AYQIQQAQLFDMFPHTAHYEVLALLQRR 375 >gi|297202920|ref|ZP_06920317.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptomyces sviceus ATCC 29083] gi|297148247|gb|EDY59291.2| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptomyces sviceus ATCC 29083] Length = 442 Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 62/206 (30%), Positives = 98/206 (47%), Gaps = 27/206 (13%) Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGN 222 R +V ER GRT +R F Q + +++ V+ +G++ L+LYCG G Sbjct: 250 RAFVRERAD--GRT--HRVGSGGFWQVHPQAADTLVKAVMQGLLPRKGEMALDLYCGVGL 305 Query: 223 FSLVLARHFD---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279 F+ LA VL +E K +VE AR+N+AA VR+ + + R Sbjct: 306 FAGALADRLGDQGAVLGIESGKRAVEDARHNLAA-----FDRVRIEQGKVEAVLPR---- 356 Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSIL-S 336 + ++D+ I +DPPR+G TV + + I Y++C+P +L RDL Sbjct: 357 TGITEVDL-------IVLDPPRAGAGRKTVQHLSSLGARRIAYVACDPAALARDLGYFRD 409 Query: 337 TTHTIERLALFDQFPYTRHMECGVLL 362 + + L +FD FP T H+EC +L Sbjct: 410 GGYRVRTLRVFDLFPMTHHVECVAIL 435 >gi|195977835|ref|YP_002123079.1| 23S rRNA-methyltransferase [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|195974540|gb|ACG62066.1| 23S rRNA-methyltransferase [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 453 Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 46/155 (29%), Positives = 71/155 (45%), Gaps = 15/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ Y G G L A+ V VE+ + +V A N A N + N V S++ Sbjct: 308 VIDAYSGIGTIGLSFAKEVKAVYGVEVIEAAVRDAEKNAALNGITNAHYVADSAE----- 362 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCR 330 N + + + I VDPPR GL ++ + A I YISCNP ++ R Sbjct: 363 -------NAMANWCQEGIKPTVIIVDPPRKGLTESFIKASAAMQPDKITYISCNPATMAR 415 Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364 D+ + ++++ D FP T H+EC VLL R Sbjct: 416 DIKRYEELGYKLQKVQPVDLFPMTHHVECVVLLQR 450 >gi|319399862|gb|EFV88109.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus epidermidis FRI909] Length = 456 Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 59/223 (26%), Positives = 101/223 (45%), Gaps = 31/223 (13%) Query: 151 LIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ 210 ++GR + T +D ++++L+ +IY + SF Q N+ + + L + Sbjct: 254 IMGRQSMT--LYGKDKIEDQLS----EVIYHISDLSFYQINSSQTEKLYQQALNYAQLTG 307 Query: 211 GDL-LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269 ++ L+ YCG G L +A V VE+ +++ A N N + N Sbjct: 308 KEIVLDTYCGIGTIGLYMAPLAKHVYGVEVVPQAIKDAEDNATKNQLKNTTF-------- 359 Query: 270 TQAMRREREFNRLKDIDIHSYRFKTI-----FVDPPRSGLDDA-TVGMVQAYPH-ILYIS 322 E + +D+ I +++ + I VDPPR G D+ +++ P I+YIS Sbjct: 360 --------ECGKAEDV-ILTWKSQGIKPDLVMVDPPRKGCDETFLTTLLKLNPKRIVYIS 410 Query: 323 CNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 CNP + RD IL+ + + + D FP T H+E L VRK Sbjct: 411 CNPSTQQRDAQILAEQYELVEITPVDMFPQTTHIETVALFVRK 453 >gi|312880126|ref|ZP_07739926.1| RNA methyltransferase, TrmA family [Aminomonas paucivorans DSM 12260] gi|310783417|gb|EFQ23815.1| RNA methyltransferase, TrmA family [Aminomonas paucivorans DSM 12260] Length = 458 Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 51/158 (32%), Positives = 75/158 (47%), Gaps = 18/158 (11%) Query: 210 QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSKE 268 QG LLELY G G+ SL LA V AVE P+ E+ + N AA+ + + ++ +++ Sbjct: 314 QGHLLELYSGVGSLSLFLASRARSVQAVEEWLPATESLQANAAAHGLEQRLSVLSGKAED 373 Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPD 326 + + R+ F + +DPPR G + + ++Y+SCNP Sbjct: 374 VLEKLARD--------------SFDGVVLDPPRGGCHPKVLERILDLDPKKVVYVSCNPA 419 Query: 327 SLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLV 363 +L RDL IL I L FD FP T H+E LL Sbjct: 420 TLARDLRILVDGGFRIRSLRPFDLFPQTAHVETRALLT 457 >gi|256784672|ref|ZP_05523103.1| RNA methyltransferase [Streptomyces lividans TK24] gi|289768558|ref|ZP_06527936.1| RNA methyltransferase [Streptomyces lividans TK24] gi|289698757|gb|EFD66186.1| RNA methyltransferase [Streptomyces lividans TK24] Length = 458 Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 54/160 (33%), Positives = 82/160 (51%), Gaps = 23/160 (14%) Query: 210 QGDL-LELYCGNGNFSLVLA-RHFDR--VLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265 +GD+ L+LYCG G F+ LA R D+ VL +E K +VE AR+N+AA VR+ Sbjct: 308 KGDMALDLYCGVGLFAGALADRVGDQGAVLGIESGKRAVEDARHNLAA-----FDRVRIE 362 Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISC 323 + + R + ++D+ I +DPPR+G TV + I Y++C Sbjct: 363 QGKVESVLPR----TGIDEVDL-------IVLDPPRAGAGRKTVQHLSTLGARRIAYVAC 411 Query: 324 NPDSLCRDLSILS-TTHTIERLALFDQFPYTRHMECGVLL 362 +P +L RDL + + L +FD FP T H+EC +L Sbjct: 412 DPAALARDLGYFQDGGYRVRTLRVFDLFPMTAHVECVAIL 451 >gi|325859605|ref|ZP_08172738.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella denticola CRIS 18C-A] gi|325482885|gb|EGC85885.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella denticola CRIS 18C-A] Length = 478 Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 51/194 (26%), Positives = 87/194 (44%), Gaps = 16/194 (8%) Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL--ELYCGNGNFSLVLARHFDRVL 235 L ++ SF Q N H+ V + G+ L +LY G G + +AR +V+ Sbjct: 295 LKFKVGPKSFYQTNTEQAYHLYS-VARTFAALTGNELVYDLYTGTGTIANFIARDARKVI 353 Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295 +E ++E A+ N N ++N K+ +D I Sbjct: 354 GIEYVPEAIEDAKVNAEINKIDNTLFYAGDMKDILT-----------EDFICRHGHPDVI 402 Query: 296 FVDPPRSGLDDATVGMV-QAYPH-ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYT 353 DPPR+G+ + ++ A P I+Y+SCNP + RDL++L + + + D FP+T Sbjct: 403 ITDPPRAGMHQDVISVILGASPKRIVYVSCNPATQARDLALLDADYRVAAVQPVDMFPHT 462 Query: 354 RHMECGVLLVRKPS 367 H+E VLL ++ + Sbjct: 463 PHVENVVLLEKREA 476 >gi|296876678|ref|ZP_06900726.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus parasanguinis ATCC 15912] gi|296432180|gb|EFH17979.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus parasanguinis ATCC 15912] Length = 452 Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 46/156 (29%), Positives = 78/156 (50%), Gaps = 15/156 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ Y G G L +A+H V VE+ +VE ++ N + N + N V +++ A Sbjct: 308 VIDAYSGIGTIGLSVAKHVKEVYGVEVIPEAVENSQKNASLNGITNAHYVCDTAE---NA 364 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV--GMVQAYPHILYISCNPDSLCR 330 M+ N LK+ + I VDPPR GL ++ + I YISCN ++ R Sbjct: 365 MK-----NWLKE----GIQPTAILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMAR 415 Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVRK 365 D+ + + ++++ D FP T H+EC LLV++ Sbjct: 416 DIKLYQELGYELKKVQPVDLFPQTHHVECVSLLVKR 451 >gi|242371794|ref|ZP_04817368.1| TrmA family RNA methyltransferase [Staphylococcus epidermidis M23864:W1] gi|242350495|gb|EES42096.1| TrmA family RNA methyltransferase [Staphylococcus epidermidis M23864:W1] Length = 453 Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 44/158 (27%), Positives = 70/158 (44%), Gaps = 22/158 (13%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +L+ YCG G L +A V VE+ +++ A N N +NN Sbjct: 311 VLDTYCGIGTIGLYMAPQAKHVYGVEVVPSAIKDAEENATKNQLNNTTF----------- 359 Query: 273 MRREREFNRLKDI----DIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPD 326 E + +DI + + VDPPR G D+ + +++ P I+YISCNP Sbjct: 360 -----ECGKAEDIILEWKAQGIKPDVVMVDPPRKGCDETFIKTLLKLNPKRIVYISCNPS 414 Query: 327 SLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 + RD +L++ + + + D FP T H+E L R Sbjct: 415 TQQRDAQMLASHYHLVEITPVDMFPQTTHIETVALFER 452 >gi|161507161|ref|YP_001577115.1| RNA methyltransferase family protein [Lactobacillus helveticus DPC 4571] gi|260102926|ref|ZP_05753163.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus helveticus DSM 20075] gi|160348150|gb|ABX26824.1| RNA methyltransferase family protein [Lactobacillus helveticus DPC 4571] gi|260083270|gb|EEW67390.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus helveticus DSM 20075] Length = 460 Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 45/156 (28%), Positives = 77/156 (49%), Gaps = 15/156 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L++ Y G G ++ A +V+ +E +V+ A++N+ NH+ N ++ S ++ Sbjct: 317 LIDAYSGVGTLGILAADRVKQVIGIETIPEAVKDAQHNVELNHIKNADYIQGSVEKVLPE 376 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330 ++ N ID + VDPPR+GL + ++Q P +YISCNP +L + Sbjct: 377 LK-----NSGVSID-------ALIVDPPRTGLAKKLIKTLLQVKPETFVYISCNPSTLAQ 424 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMEC-GVLLVRK 365 DL +LS + I + D P T E L++RK Sbjct: 425 DLVLLSEVYDIRVIQNVDMLPQTPRCEAIAKLVLRK 460 >gi|138894075|ref|YP_001124528.1| RNA methyltransferase-like protein [Geobacillus thermodenitrificans NG80-2] gi|134265588|gb|ABO65783.1| RNA methyltransferase-like protein [Geobacillus thermodenitrificans NG80-2] Length = 464 Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 53/213 (24%), Positives = 97/213 (45%), Gaps = 21/213 (9%) Query: 155 ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-- 212 ++T++ +Y+ E L L + +F Q N V + + V A+ + G Sbjct: 264 GDETEVLAGDEYIQETLG----DLSFELSARAFFQLNPIQTVKLYDEVKKAS-ALTGTER 318 Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G L LAR V ++ ++E A+ N + N V ++ + Sbjct: 319 IVDAYCGVGTIGLWLARDAKEVRGMDTIPEAIEDAKKNAKKHGFENTHYVVGKAEYWLPK 378 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330 ++ ++ + VDPPR G D A + +++ P ++Y+SCNP SL R Sbjct: 379 WVKQ------------GWKPDVVIVDPPRVGCDRALLETILRVRPQTVVYVSCNPSSLAR 426 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363 DL L+ + ++ + D FP+T H+E L+ Sbjct: 427 DLDTLARAYRVDYIQPVDMFPHTAHVETVAKLI 459 >gi|21224242|ref|NP_630021.1| RNA methyltransferase [Streptomyces coelicolor A3(2)] gi|50401722|sp|O54099|Y5901_STRCO RecName: Full=Uncharacterized RNA methyltransferase SCO5901 gi|2815315|emb|CAA16438.1| putative RNA methyltransferase [Streptomyces coelicolor A3(2)] Length = 458 Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 54/160 (33%), Positives = 82/160 (51%), Gaps = 23/160 (14%) Query: 210 QGDL-LELYCGNGNFSLVLA-RHFDR--VLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265 +GD+ L+LYCG G F+ LA R D+ VL +E K +VE AR+N+AA VR+ Sbjct: 308 KGDMALDLYCGVGLFAGALADRVGDQGAVLGIESGKRAVEDARHNLAA-----FDRVRIE 362 Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISC 323 + + R + ++D+ I +DPPR+G TV + I Y++C Sbjct: 363 QGKVESVLPR----TGIDEVDL-------IVLDPPRAGAGRKTVQHLSTLGARRIAYVAC 411 Query: 324 NPDSLCRDLSILS-TTHTIERLALFDQFPYTRHMECGVLL 362 +P +L RDL + + L +FD FP T H+EC +L Sbjct: 412 DPAALARDLGYFQDGGYRVRTLRVFDLFPMTAHVECVAIL 451 >gi|325267375|ref|ZP_08134036.1| 23S rRNA (uracil-5-)-methyltransferase [Kingella denitrificans ATCC 33394] gi|324981170|gb|EGC16821.1| 23S rRNA (uracil-5-)-methyltransferase [Kingella denitrificans ATCC 33394] Length = 435 Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 50/177 (28%), Positives = 82/177 (46%), Gaps = 16/177 (9%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 FTQ N +N M+ + + +++L+CG GNF+L LAR R++ +E A Sbjct: 262 GDFTQINLPMNAQMVARAVRLLDPQPHERIVDLFCGLGNFTLPLARSGARIIGIEGADSL 321 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 A+ N N ++N+ EF+ A F+ D F + +DPPR+G Sbjct: 322 TRRAQANARRNGLDNI--------EFSTA----DLFDTQPDTVAQWGHFDKMLLDPPRAG 369 Query: 304 LDDATVGMVQAY--PHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHME 357 + Y I+Y+SCNP +L RD ++L + + + FP+T H+E Sbjct: 370 ALAVVQSLHAPYLPERIVYVSCNPATLARDAAVLVGKGYAFRAAGILNLFPHTAHIE 426 >gi|312867756|ref|ZP_07727962.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus parasanguinis F0405] gi|311096819|gb|EFQ55057.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus parasanguinis F0405] Length = 452 Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 46/156 (29%), Positives = 78/156 (50%), Gaps = 15/156 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ Y G G L +A+H V VE+ +VE ++ N + N + N V +++ A Sbjct: 308 VIDAYSGIGTIGLSVAKHVKEVYGVEVIPEAVENSQKNASINGITNAHYVCDTAE---NA 364 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV--GMVQAYPHILYISCNPDSLCR 330 M+ N LK+ + I VDPPR GL ++ + I YISCN ++ R Sbjct: 365 MK-----NWLKE----GIQPTAILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMAR 415 Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVRK 365 D+ + + ++++ D FP T H+EC LLV++ Sbjct: 416 DIKLYQELGYELKKVQPVDLFPQTHHVECVSLLVKR 451 >gi|254419097|ref|ZP_05032821.1| tRNA (Uracil-5-)-methyltransferase superfamily [Brevundimonas sp. BAL3] gi|196185274|gb|EDX80250.1| tRNA (Uracil-5-)-methyltransferase superfamily [Brevundimonas sp. BAL3] Length = 414 Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 59/203 (29%), Positives = 91/203 (44%), Gaps = 29/203 (14%) Query: 170 RLTVAGRTLI-YRQIENSFTQ-----PNAGI-------NVHMLEWVLAATKGIQGDLLEL 216 RL++AG TL+ RQ + F P G M+E +AA KG + + +L Sbjct: 219 RLSLAGDTLVMARQPKIGFGPATVPLPAGGFLQAVPQAEAAMVERAVAAVKGAR-KIADL 277 Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276 +CG G F+ LA V+A + +K +EA + V + K ++ + E RR Sbjct: 278 FCGAGTFTFPLA-TVAPVIAADASKAGIEALKAG-----VGSAKGMKAITAEARDLFRRP 331 Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILY-ISCNPDSLCRDLSIL 335 LK D I DPPR+G D T + ++ +SCNP + RD +L Sbjct: 332 LTPYDLKGCD-------AIVFDPPRAGAIDQTAQIAGTKAGVVVGVSCNPQTFARDARVL 384 Query: 336 -STTHTIERLALFDQFPYTRHME 357 +ER+ DQF ++ H+E Sbjct: 385 IDAGFRLERVTPVDQFLWSAHVE 407 >gi|206901370|ref|YP_002250424.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Dictyoglomus thermophilum H-6-12] gi|206740473|gb|ACI19531.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Dictyoglomus thermophilum H-6-12] Length = 448 Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 46/153 (30%), Positives = 76/153 (49%), Gaps = 15/153 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + + YCG G SL L++ ++V +E+ + ++E A N N V NV+ + S+E Sbjct: 305 VFDAYCGIGTISLFLSKKAEKVYGIEVERTAIEDAWKNARLNKVKNVEFIWGRSEE---V 361 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCR 330 + R E ++ D + +DPPR G D + + I+YISC P +L R Sbjct: 362 IPRLIEDGKIPD---------AVVLDPPRKGCDQNLLESIIRAKIRQIIYISCYPSTLAR 412 Query: 331 DLSI-LSTTHTIERLALFDQFPYTRHMECGVLL 362 D++I L+ + + + D FP T H+E LL Sbjct: 413 DINILLNAGYNLVDVQPVDMFPQTFHVETIALL 445 >gi|324991589|gb|EGC23522.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis SK353] Length = 469 Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 46/155 (29%), Positives = 74/155 (47%), Gaps = 15/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ Y G G L +A++ +V VE+ +VE +R N N + N V ++E Q Sbjct: 321 VIDAYSGIGTIGLSVAKYVKQVYGVEVIPEAVENSRKNAEINGIANASYVCAPAEEAIQD 380 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCR 330 +E + I VDPPR GL ++ + V P I YISCN ++ R Sbjct: 381 WLKE------------GIQADVILVDPPRKGLTESFIKASVSMEPKKITYISCNVATMAR 428 Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364 D+ + + ++++ D FP T H+E LLVR Sbjct: 429 DIKLYQELGYELKKVQPVDLFPQTHHVEAVSLLVR 463 >gi|294674202|ref|YP_003574818.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella ruminicola 23] gi|294473371|gb|ADE82760.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella ruminicola 23] Length = 483 Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 63/217 (29%), Positives = 94/217 (43%), Gaps = 24/217 (11%) Query: 161 CLDRDYVDERLTVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGD 212 C D E L G IY +E+ SF Q N H+ V G+ G+ Sbjct: 279 CNDTIGDQEILVFKGIDHIYELMEDLKFKVGPKSFYQTNTEQAYHLYS-VARNFAGLTGN 337 Query: 213 LL--ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270 L +LY G G + +A+ +V+ +E ++E A+ N N + N K+ Sbjct: 338 ELVYDLYTGTGTIANFVAKKARKVIGIEYVPEAIEDAKINSEVNKIGNTLFYAGDMKDIL 397 Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL-DDATVGMVQAYPH-ILYISCNPDSL 328 EF I H + I DPPR+G+ D ++ A P I+Y+SCNP + Sbjct: 398 T-----EEF-----IAEHGHP-DVIITDPPRAGMHPDVVKTILGAAPKRIVYVSCNPATQ 446 Query: 329 CRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 RDL L + + + D FP+T H+E VLL R+ Sbjct: 447 ARDLHDLDVDYRVAAVQPVDMFPHTPHVENVVLLERR 483 >gi|251782756|ref|YP_002997059.1| hypothetical protein SDEG_1350 [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242391386|dbj|BAH81845.1| hypothetical protein SDEG_1350 [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 453 Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 53/186 (28%), Positives = 87/186 (46%), Gaps = 16/186 (8%) Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 SF Q N + + + +A + + D+ ++ Y G G L A+ V VE+ + +V Sbjct: 280 SFYQVNTVMAEKLYQTAIAFSDLSEDDVVIDAYSGIGTIGLSFAKTVKAVYGVEVIEAAV 339 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 + A+ N A N + NV V +++ +E DI + I VDPPR GL Sbjct: 340 KDAQQNAARNGITNVHFVADTAENAMATWAKE-------DI-----KPSVILVDPPRKGL 387 Query: 305 DDATV-GMVQAYPH-ILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVL 361 ++ + V P I Y+SCNP ++ RD+ + + ++ D FP T H+EC L Sbjct: 388 TESFIQASVAMGPQKITYVSCNPATMARDIKRYQDLGYKLTKVQPVDLFPQTHHVECIAL 447 Query: 362 LVRKPS 367 + R S Sbjct: 448 IQRMKS 453 >gi|196250256|ref|ZP_03148949.1| RNA methyltransferase, TrmA family [Geobacillus sp. G11MC16] gi|196210145|gb|EDY04911.1| RNA methyltransferase, TrmA family [Geobacillus sp. G11MC16] Length = 469 Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 53/213 (24%), Positives = 97/213 (45%), Gaps = 21/213 (9%) Query: 155 ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-- 212 ++T++ +Y+ E L L + +F Q N V + + V A+ + G Sbjct: 269 GDETEVLAGDEYIQETLG----DLSFELSARAFFQLNPIQTVKLYDEVKKAS-ALTGTER 323 Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G L LAR V ++ ++E A+ N + N V ++ + Sbjct: 324 IVDAYCGVGTIGLWLARDAKEVRGMDTIPEAIEDAKKNAKKHGFENTHYVVGKAEYWLPK 383 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330 ++ ++ + VDPPR G D A + +++ P ++Y+SCNP SL R Sbjct: 384 WVKQ------------GWKPDVVIVDPPRVGCDRALLETILRVRPQTVVYVSCNPSSLAR 431 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363 DL L+ + ++ + D FP+T H+E L+ Sbjct: 432 DLDTLARAYRVDYIQPVDMFPHTAHVETVAKLI 464 >gi|294619066|ref|ZP_06698561.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium E1679] gi|291594727|gb|EFF26109.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium E1679] Length = 460 Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 60/222 (27%), Positives = 98/222 (44%), Gaps = 27/222 (12%) Query: 154 RANKTKICLDRDYVDERLTVAGRTLIYRQI-ENSFT-QPNAGINVHMLEWVLAATKGIQG 211 +A KT + + DE + + G+ I QI E +F P A ++ + L +GI+ Sbjct: 252 QAQKTSLVMG----DETIHLWGKEAIEEQINEVTFDLSPRAFFQLNPQQTELLYGEGIKA 307 Query: 212 -------DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRM 264 +++ YCG G L +A+ V ++ ++ A+ N +N + Sbjct: 308 LDVQPNETIVDAYCGVGTIGLSVAKQAKEVRGMDTVPQAIADAKKNAERLGYHNTRYEVG 367 Query: 265 SSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYIS 322 ++++ E ++ I VDPPR+GLD+A + + YP ++YIS Sbjct: 368 TAEQVLPKWLNE------------GFQPDGIIVDPPRTGLDNALIQSLLKYPPKKLVYIS 415 Query: 323 CNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 CN +L RDL LS IE L D FP T E V + R Sbjct: 416 CNVSTLARDLVNLSKKFKIEYLQSVDMFPQTARCEVVVKMTR 457 >gi|229815568|ref|ZP_04445895.1| hypothetical protein COLINT_02618 [Collinsella intestinalis DSM 13280] gi|229808798|gb|EEP44573.1| hypothetical protein COLINT_02618 [Collinsella intestinalis DSM 13280] Length = 437 Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 51/155 (32%), Positives = 74/155 (47%), Gaps = 21/155 (13%) Query: 214 LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273 ++LYCG G F+L LAR D V AVE P+V R N+ ++ NV ++ + Sbjct: 299 IDLYCGAGTFTLPLARRCDFVSAVESYGPAVRDLRRNLDIANLTNVDVIGGDAV------ 352 Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRD 331 REF +D D+ + VDPPR+GL + ++ + + Y+SC+P +L RD Sbjct: 353 ---REFPD-EDADV-------LVVDPPRAGLAPEAIRLIASTSARDVAYVSCDPATLARD 401 Query: 332 LSILSTTHTIERL--ALFDQFPYTRHMECGVLLVR 364 L T + D FP T H E V L R Sbjct: 402 LRRFVEEGTFRPVWATPVDLFPQTFHCETVVRLTR 436 >gi|225442369|ref|XP_002276511.1| PREDICTED: hypothetical protein [Vitis vinifera] gi|297743126|emb|CBI35993.3| unnamed protein product [Vitis vinifera] Length = 570 Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 54/203 (26%), Positives = 86/203 (42%), Gaps = 30/203 (14%) Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD----LLELYCGNGNFSLVLARHF 231 R L ++ NSF Q N +L ++ G++GD +L+L+CG G L L+R Sbjct: 379 RGLTFQISANSFFQTNTH-QAEVLYKLIEDCAGLRGDGSEIVLDLFCGTGTIGLTLSRRV 437 Query: 232 DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY- 290 V E+ +V AR N N + N + E + N++ + + Sbjct: 438 RHVYGYEVVAQAVSDARRNAKLNGICNATFI-------------EGDLNKIGENFGKDFP 484 Query: 291 RFKTIFVDPPRSG--LDDATVGMVQAYPHILYISCNPDSLCRDLSILS---------TTH 339 + + DP R G + + P I+Y+SCNP + RDL L + Sbjct: 485 KPDVVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVVEQNIEGCY 544 Query: 340 TIERLALFDQFPYTRHMECGVLL 362 ++ L D FP+T H+EC LL Sbjct: 545 KLKSLQPVDMFPHTPHIECVCLL 567 >gi|332702740|ref|ZP_08422828.1| RNA methyltransferase, TrmA family [Desulfovibrio africanus str. Walvis Bay] gi|332552889|gb|EGJ49933.1| RNA methyltransferase, TrmA family [Desulfovibrio africanus str. Walvis Bay] Length = 508 Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 57/208 (27%), Positives = 96/208 (46%), Gaps = 20/208 (9%) Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPN-AGIN--VHMLEWVLAATKGIQG-DLLELYCG 219 R + D L ++ L YR +F Q N AG ++E + + G ++ + YCG Sbjct: 314 RAWGDPVLEMSLGGLRYRLSPQAFFQTNTAGAERLFGLVEEMAGLSDWPNGPEIFDCYCG 373 Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279 G +L LAR V E+ + +V A N N++ N V +RR Sbjct: 374 VGAMALRLARATGHVTGFELVEGAVRDATDNARLNNLTNCSFV-------AGDLRRTLAD 426 Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGL-DDATVGMVQAYPH-ILYISCNPDSLCRDLSILST 337 +L D+ + +DPPR+G+ D ++ P I+ +SC+P + RD ++L Sbjct: 427 RKLPKPDV-------LVIDPPRAGMHPDVAARILDLAPERIVSVSCDPATFARDAALLLP 479 Query: 338 THTIERLALFDQFPYTRHMECGVLLVRK 365 +T+ R+ D FP++ H+E LL+R Sbjct: 480 GYTLTRVVPVDLFPHSHHVETVALLIRN 507 >gi|288904724|ref|YP_003429945.1| RNA methyltransferase, TrmA family [Streptococcus gallolyticus UCN34] gi|288731449|emb|CBI13001.1| putative RNA methyltransferase, TrmA family [Streptococcus gallolyticus UCN34] Length = 450 Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 45/155 (29%), Positives = 66/155 (42%), Gaps = 14/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G A V ++I +V A+ N N +E Sbjct: 308 VIDAYCGVGTIGFAFAAKVKSVRGMDIIPEAVADAKKNAQRMGFENTHYEAGRVEEIIPK 367 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330 +E YR + VDPPR+GLDD + + Y ++Y+SCN +L R Sbjct: 368 WYKE------------GYRADALIVDPPRTGLDDKLLDTILKYQPAKMVYVSCNTATLAR 415 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 DL LS + + + D FP+T E V LVRK Sbjct: 416 DLVKLSKVYDVHYIQSVDMFPHTARTEAVVKLVRK 450 >gi|296315101|ref|ZP_06865042.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Neisseria polysaccharea ATCC 43768] gi|296838012|gb|EFH21950.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Neisseria polysaccharea ATCC 43768] Length = 443 Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 52/177 (29%), Positives = 80/177 (45%), Gaps = 15/177 (8%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 FTQ N N M+ V+ QG+ + +L+CG GNFSL +A+ V+ +E A+ Sbjct: 265 GDFTQINTDTNRLMISRVVKMLDIRQGERVADLFCGLGNFSLPIAKSGADVVGIEGAENL 324 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 V AR N N + +F A F+ + RF + +DPPRSG Sbjct: 325 VRRARQNARLNGCDG-------QTDFIAA----NLFDCTEKTVASWGRFDKMLIDPPRSG 373 Query: 304 LDDATVGMVQAY--PHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHME 357 + + Y I+Y+SCNP +L RD +L + + + + + F T H E Sbjct: 374 AYEVVKSLHTPYLPQKIVYVSCNPSTLARDAGVLVEKGYILSQAGIMNMFAQTSHTE 430 >gi|269941368|emb|CBI49765.1| putative RNA methyltransferase [Staphylococcus aureus subsp. aureus TW20] Length = 453 Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 43/152 (28%), Positives = 69/152 (45%), Gaps = 14/152 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +L+ YCG G L +A V VE+ ++E A+ N N N+ V ++E Sbjct: 311 VLDTYCGIGTIGLYMAPLAKHVYGVEVVPSAIEDAQQNATINQCNHTTFVCGKAEEVILQ 370 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330 + + + + VDPPR G D+ + ++ P I+YISCNP + R Sbjct: 371 WKAQ------------GIKPDVVMVDPPRKGCDETFIQTLLTLEPKRIVYISCNPATQQR 418 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLL 362 D +L+ + +E + D FP T H+E L Sbjct: 419 DALLLAEKYQLEEVTPVDMFPQTTHVETVALF 450 >gi|325285147|ref|YP_004260937.1| RNA methyltransferase, TrmA family [Cellulophaga lytica DSM 7489] gi|324320601|gb|ADY28066.1| RNA methyltransferase, TrmA family [Cellulophaga lytica DSM 7489] Length = 470 Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 58/218 (26%), Positives = 95/218 (43%), Gaps = 30/218 (13%) Query: 163 DRDYVDERLTVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGDLL 214 D Y + + AGR I+ ++E SF Q N+ + L + + GD L Sbjct: 267 DTIYDQDIVCFAGRDHIFEEMEGLQFKINPKSFYQTNSE-QAYELYKITRDFAELSGDEL 325 Query: 215 --ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +LY G G + +++ +V+ +E ++E A+ N N ++N K+ Sbjct: 326 VYDLYTGTGTIAQFVSKKAKKVVGIEAVPEAIEDAKANAKHNKIDNTVFYAGDMKKIFNP 385 Query: 273 MRREREF---NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDS 327 EF N D+ I DPPR G+ V + A ++Y+SCN + Sbjct: 386 -----EFIAQNGTPDV---------IITDPPREGMHKDVVEQILAIAPNKVVYVSCNSAT 431 Query: 328 LCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 RDL +++ + I RL D FP T H+E VLL ++ Sbjct: 432 QARDLELMNDMYEITRLQAVDMFPQTHHVENVVLLKKR 469 >gi|312900072|ref|ZP_07759389.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX0470] gi|311292829|gb|EFQ71385.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX0470] Length = 456 Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 45/155 (29%), Positives = 72/155 (46%), Gaps = 14/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G L LA+ +V ++ +++ AR+N V N ++++ Sbjct: 314 VVDAYCGVGTIGLSLAKQAHQVRGMDTIPAAIDDARFNAKRLGVTNTHYAVGTAEDLLPK 373 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA--TVGMVQAYPHILYISCNPDSLCR 330 +E ++ I VDPPR+GLD T + Q ++YISCN +L R Sbjct: 374 WFKE------------GFKPDAIVVDPPRTGLDRKLLTALLKQPPKKMVYISCNVSTLAR 421 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 DL L+ + ++ L D FP T E V L RK Sbjct: 422 DLIQLAKVYQVDYLQSVDMFPQTARCEVVVKLTRK 456 >gi|148889|gb|AAA24958.1| this partial ORF is 58% identical to an E.coli tRNA methyl transferase gene, trnA.; ORF4; putative [Haemophilus influenzae] Length = 63 Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 31/61 (50%), Positives = 42/61 (68%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L I QY + L +K+++L ++ F P++Q+F S HY MRAEF IWH+ DD YHIMFD Sbjct: 3 LPISQYNELLQKKLEKLTALLHPFNAPDIQVFDSPTSHYAMRAEFRIWHEQDDFYHIMFD 62 Query: 65 Q 65 Q Sbjct: 63 Q 63 >gi|86133209|ref|ZP_01051791.1| RNA methyltransferase, TrmA family [Polaribacter sp. MED152] gi|85820072|gb|EAQ41219.1| RNA methyltransferase, TrmA family [Polaribacter sp. MED152] Length = 483 Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 42/157 (26%), Positives = 81/157 (51%), Gaps = 17/157 (10%) Query: 213 LLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270 +++L+CG G ++A + +++ V+I ++E A+ N N++ +K +F Sbjct: 339 VMDLFCGTGTIGQIVASKSENAKIVGVDIVASAIEDAKENAKRNNIEGLKFYAADVGKF- 397 Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSL 328 + + E+ + KTI +DP R+G+ T+ + ++Y+SCNP + Sbjct: 398 --LTQHPEYQD---------KIKTIILDPARAGIMPKTLQKIINLNADRMVYVSCNPATQ 446 Query: 329 CRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364 RD +L + I++++L DQFP+T H+E VL R Sbjct: 447 ARDTELLREAGYEIKKISLVDQFPHTAHIETVVLFDR 483 >gi|320008078|gb|ADW02928.1| deoxyribonuclease/rho motif-related TRAM [Streptomyces flavogriseus ATCC 33331] Length = 452 Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 48/155 (30%), Positives = 77/155 (49%), Gaps = 22/155 (14%) Query: 214 LELYCGNGNFSLVLARHFDR---VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270 L+LYCG G F+ + + VL +E K +VE AR+N+ ++ VR+ + Sbjct: 307 LDLYCGVGLFAGAIGQRIGEKGAVLGIESGKRAVEDARHNL-----KDLDRVRIEHGKVD 361 Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSL 328 Q + R + + D+ I +DPPR+G ATV + A I Y++C+P +L Sbjct: 362 QVLPR----TGITECDL-------IVLDPPRAGAGKATVKQLVALGARRIAYVACDPAAL 410 Query: 329 CRDLSIL-STTHTIERLALFDQFPYTRHMECGVLL 362 RD++ + + L FD FP T H+EC +L Sbjct: 411 ARDIAYFRDGGYRVRTLRAFDLFPMTHHVECVAIL 445 >gi|148239625|ref|YP_001225012.1| putative RNA methyltransferase [Synechococcus sp. WH 7803] gi|147848164|emb|CAK23715.1| Hypothetical RNA methyltransferase [Synechococcus sp. WH 7803] Length = 466 Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 49/170 (28%), Positives = 81/170 (47%), Gaps = 22/170 (12%) Query: 200 EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259 +W++ ++++ YCG G +L LA V+ +EI + SV A+ N N + Sbjct: 304 DWIVGVAP--SANVIDAYCGIGTIALPLAAAGLNVIGLEINRASVIQAQENARRNALRTA 361 Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH-- 317 + + + + + IH + + VDPPR GL + M+ A P Sbjct: 362 TFIDGDVVDHLRQL-----------LPIH----QVLVVDPPRKGLAPDVLQMILAIPPAF 406 Query: 318 ILYISCNPDSLCRDLSILSTT---HTIERLALFDQFPYTRHMECGVLLVR 364 ++Y SC+P +L RDL L+ + IE + D FP T H+EC V++VR Sbjct: 407 LIYQSCDPATLARDLQQLAGPDGPYRIETIRPVDFFPQTSHLECLVMMVR 456 >gi|322376104|ref|ZP_08050613.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus sp. C300] gi|321278872|gb|EFX55916.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus sp. C300] Length = 453 Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 42/155 (27%), Positives = 71/155 (45%), Gaps = 14/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L++ YCG G A+ + ++I ++E A+ N +N +++E Sbjct: 308 LIDAYCGVGTIGFAFAKKVKSLRGMDIIPEAIEDAKRNAQKMGFDNTHYEAGTAEETIPR 367 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330 ++ YR + VDPPR+GLDD + + Y ++Y+SCN +L R Sbjct: 368 WYQD------------GYRADALIVDPPRTGLDDKLLETILTYVPEKMVYVSCNVSTLAR 415 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 DL L + ++ + D FP+T E V LV+K Sbjct: 416 DLVKLVKVYDLQYIQSVDMFPHTARTEAVVKLVKK 450 >gi|322387793|ref|ZP_08061401.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus infantis ATCC 700779] gi|321141295|gb|EFX36792.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus infantis ATCC 700779] Length = 452 Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 46/156 (29%), Positives = 77/156 (49%), Gaps = 15/156 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ Y G G L +A+H V VE+ +VE ++ N N + N V +++ A Sbjct: 308 VIDAYSGIGTIGLSVAKHVKEVYGVEVTPEAVENSQKNAELNGITNAHYVCDTAE---NA 364 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV--GMVQAYPHILYISCNPDSLCR 330 M+ N LK+ + I VDPPR GL ++ + I YISCN ++ R Sbjct: 365 MK-----NWLKE----GIQPTAILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMAR 415 Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVRK 365 D+ + + ++++ D FP T H+EC LLV++ Sbjct: 416 DIKLYQKLGYELKKVQPVDLFPQTHHVECVSLLVKR 451 >gi|171058602|ref|YP_001790951.1| 23S rRNA 5-methyluridine methyltransferase [Leptothrix cholodnii SP-6] gi|170776047|gb|ACB34186.1| RNA methyltransferase, TrmA family [Leptothrix cholodnii SP-6] Length = 498 Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 78/295 (26%), Positives = 130/295 (44%), Gaps = 44/295 (14%) Query: 101 RAKLFQIDYLTSQSDQAIVTLIYHRL----LDDAWRECAIRLRD--ALHARKYQIQLIGR 154 R +L QI+ +S Q + ++ + L L+ A RLRD A+H ++ +Q G Sbjct: 187 RERLPQIELAVGESSQGLENVLVNALVLRNLEPLSAADAQRLRDFAAIHPVQWWLQPKG- 245 Query: 155 ANKTKICLDRDYVDERLTVA----GRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ 210 +T LD + V +L + G T+ ++ + FTQ N IN ++ L K +Q Sbjct: 246 -PETVHLLD-EGVGPKLAYSLPEYGVTMPFKPTD--FTQVNHHINRVLVGKALGLLK-VQ 300 Query: 211 GD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268 G+ +++ +CG GNF+L LA VL +E ++ V+ +R N N + + Sbjct: 301 GNERVIDWFCGLGNFTLPLATQAREVLGIEGSETLVQRSRENAQLNGLAH---------- 350 Query: 269 FTQAMRREREFNRLKDIDIHSY-RFKTIFVDPPRSG-------LDDATVGMVQAYP---H 317 A R L D+ +Y +DPPR G L + + Y Sbjct: 351 --NATFAARNLFELSPADLAAYGSADRWLIDPPREGAFALSKALAEVRQQPIDGYTPPQR 408 Query: 318 ILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTRHMECGVLLVRKPSGWH 370 I+Y+SCNP +L RD +L + + FP+T H+E + + + GW Sbjct: 409 IVYVSCNPSTLARDAGLLVHQAGYRCTAAGAVNMFPHTAHVES-IAVFERIDGWQ 462 >gi|293553261|ref|ZP_06673898.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium E1039] gi|291602671|gb|EFF32886.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium E1039] Length = 460 Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 60/222 (27%), Positives = 98/222 (44%), Gaps = 27/222 (12%) Query: 154 RANKTKICLDRDYVDERLTVAGRTLIYRQI-ENSFT-QPNAGINVHMLEWVLAATKGIQG 211 +A KT + + DE + + G+ I QI E +F P A ++ + L +GI+ Sbjct: 252 QAQKTSLVMG----DETIHLWGKEAIEEQINEVTFDLSPRAFFQLNPQQTELLYGEGIKA 307 Query: 212 -------DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRM 264 +++ YCG G L +A+ V ++ ++ A+ N +N + Sbjct: 308 LDVQPNETIVDAYCGVGTIGLSVAKQAKEVRGMDTVPQAIADAKKNAERLGYHNTRYEVG 367 Query: 265 SSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYIS 322 ++++ E ++ I VDPPR+GLD+A + + YP ++YIS Sbjct: 368 TAEQVLPKWLNE------------GFQPDGIIVDPPRTGLDNALIQSLLKYPPKKLVYIS 415 Query: 323 CNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 CN +L RDL LS IE L D FP T E V + R Sbjct: 416 CNVSTLARDLVDLSKKFKIEYLQSVDMFPQTARCEVVVKMTR 457 >gi|291547098|emb|CBL20206.1| 23S rRNA m(5)U-1939 methyltransferase [Ruminococcus sp. SR1/5] Length = 484 Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 62/217 (28%), Positives = 97/217 (44%), Gaps = 31/217 (14%) Query: 154 RANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD- 212 ++++TKI +DY E L L ++ SF QPN+ E + + + GD Sbjct: 234 QSDETKILYGKDYFYEELL----GLKFKISTFSFFQPNS----LAAEILYSKVREYVGDT 285 Query: 213 ----LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268 + +LY G G + + A V+ VEI + +V+AAR N A N ++N + + Sbjct: 286 RDKVVFDLYSGTGTIAQLAASVASEVIGVEIVEDAVKAARENAALNGIDNCRFIAG---- 341 Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPD 326 + LK +D + I +DPPR G+ + + AY I+YISC Sbjct: 342 -----------DVLKVLDEVPEKPDMIILDPPRDGVHPKALPKILAYGVDQIVYISCKVT 390 Query: 327 SLCRDL-SILSTTHTIERLALFDQFPYTRHMECGVLL 362 SL RDL + + + DQF H+E VLL Sbjct: 391 SLVRDLPAFYEAGYEMTHACAVDQFCQGVHVETIVLL 427 >gi|300173743|ref|YP_003772909.1| RNA m5u methyltransferase family [Leuconostoc gasicomitatum LMG 18811] gi|299888122|emb|CBL92090.1| RNA m5u methyltransferase family [Leuconostoc gasicomitatum LMG 18811] Length = 458 Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 60/185 (32%), Positives = 91/185 (49%), Gaps = 29/185 (15%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGI--QGDL-LELYCGNGNFSLVLARHFDRVLAVEIAK 241 NSF Q N + + LAA K DL ++ Y G G + +A +V+ VE+ Sbjct: 284 NSFYQVNPQTTEVLYD--LAAKKAALKPTDLVIDAYSGIGTIGITIANQVRQVIGVEVIP 341 Query: 242 PSVEAARYNIAANHVNNVK-IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300 +V A+ N+ AN++NN I+ + K+F + + ER R +FVDPP Sbjct: 342 GAVADAQINVRANNINNADYILADAPKQFAK-WQSER------------LRPNVVFVDPP 388 Query: 301 RSGLDDATVGMVQAYPHI-----LYISCNPDSLCRD-LSILSTTHTIE-RLALFDQFPYT 353 R GL T ++QA + +YISCNP +L RD + I+ + I+ + DQFP T Sbjct: 389 RRGL---TRELIQATTEMGPDKFVYISCNPVTLVRDAVEIIRNGYHIDGPIVPVDQFPQT 445 Query: 354 RHMEC 358 H+E Sbjct: 446 SHIES 450 >gi|293570978|ref|ZP_06682021.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium E980] gi|291608904|gb|EFF38183.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium E980] Length = 460 Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 60/222 (27%), Positives = 98/222 (44%), Gaps = 27/222 (12%) Query: 154 RANKTKICLDRDYVDERLTVAGRTLIYRQI-ENSFT-QPNAGINVHMLEWVLAATKGIQG 211 +A KT + + DE + + G+ I QI E +F P A ++ + L +GI+ Sbjct: 252 QAQKTSLVMG----DETIHLWGKEAIEEQINEVTFDLSPRAFFQLNPQQTELLYGEGIKA 307 Query: 212 -------DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRM 264 +++ YCG G L +A+ V ++ ++ A+ N +N + Sbjct: 308 LDVQPNETIVDAYCGVGTIGLSVAKQAKEVRGMDTVPQAIADAKKNAERLGYHNTRYEVG 367 Query: 265 SSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYIS 322 ++++ E ++ I VDPPR+GLD+A + + YP ++YIS Sbjct: 368 TAEQVLPKWLNE------------GFQPDGIIVDPPRTGLDNALIQSLLKYPPKKLVYIS 415 Query: 323 CNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 CN +L RDL LS IE L D FP T E V + R Sbjct: 416 CNVSTLARDLVDLSKKFKIEYLQSVDMFPQTARCEVVVKMTR 457 >gi|57867361|ref|YP_189004.1| RNA methyltransferase [Staphylococcus epidermidis RP62A] gi|81674004|sp|Q5HN37|Y1435_STAEQ RecName: Full=Uncharacterized RNA methyltransferase SERP1435 gi|57638019|gb|AAW54807.1| RNA methyltransferase, TrmA family [Staphylococcus epidermidis RP62A] Length = 456 Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 45/159 (28%), Positives = 70/159 (44%), Gaps = 22/159 (13%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +L+ YCG G L +A V VE+ +++ A N N + N Sbjct: 311 VLDTYCGIGTIGLYMAPLAKHVYGVEVVPQAIKDAEDNATKNQLKNTTF----------- 359 Query: 273 MRREREFNRLKDIDI----HSYRFKTIFVDPPRSGLDDA-TVGMVQAYPH-ILYISCNPD 326 E + +D+ + + + VDPPR G D+ +++ P I+YISCNP Sbjct: 360 -----ECGKAEDVILTWKSQGIKPGVVMVDPPRKGCDETFLTTLLKLNPKRIVYISCNPS 414 Query: 327 SLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 + RD IL+ + + + D FP T H+E L VRK Sbjct: 415 TQQRDAQILAEQYELVEITPVDMFPQTTHIETVALFVRK 453 >gi|269216883|ref|ZP_06160737.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Slackia exigua ATCC 700122] gi|269129690|gb|EEZ60774.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Slackia exigua ATCC 700122] Length = 442 Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 57/184 (30%), Positives = 87/184 (47%), Gaps = 21/184 (11%) Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 SF Q N ++E L A +GD + +LYCG G F++ LAR V VE SV Sbjct: 276 SFFQVNTEQAERLVETTLEALDVREGDEVADLYCGVGTFTIPLARTGAHVYGVESYSSSV 335 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 R +A ++ ++ + RE L +D + VDPPR+GL Sbjct: 336 RDLR-RVAEETELDIDVIGGDAA---------RELPMLGHLD-------AVLVDPPRAGL 378 Query: 305 DDATV-GMVQAYP-HILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVL 361 D + V + +A P + Y+SC+P + RD++ + + + R D FP T H+E L Sbjct: 379 DASLVKSIAEAGPTKVAYVSCDPATWARDVARFEAQGYELTRATPVDLFPQTYHVETTSL 438 Query: 362 LVRK 365 L+RK Sbjct: 439 LIRK 442 >gi|227356755|ref|ZP_03841140.1| 23S rRNA (uracil-5-)-methyltransferase [Proteus mirabilis ATCC 29906] gi|227163045|gb|EEI47980.1| 23S rRNA (uracil-5-)-methyltransferase [Proteus mirabilis ATCC 29906] Length = 377 Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 46/157 (29%), Positives = 76/157 (48%), Gaps = 18/157 (11%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L +L+CG+G F L A+ ++ +EI+ ++E AR + + +V+ + S F A Sbjct: 237 LWDLFCGSGGFGLHCAQKNTELIGIEISPEAIECARLSANELGLEHVEFQALDSTGFALA 296 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCR 330 E + V+PPR G+ + + + ILY SCN ++ + Sbjct: 297 RESVPEL---------------VLVNPPRRGIGETLCDYLNSMKPRFILYSSCNAQTMAK 341 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRKPS 367 D+ LS + I+R+ LFD FP+T H E LLV + S Sbjct: 342 DIQQLS-HYRIDRVQLFDMFPHTAHYEVLTLLVLQQS 377 >gi|182418140|ref|ZP_02949440.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium butyricum 5521] gi|237666196|ref|ZP_04526183.1| 23S rRNA (uracil-5-)-methyltransferase [Clostridium butyricum E4 str. BoNT E BL5262] gi|182377958|gb|EDT75498.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium butyricum 5521] gi|237658286|gb|EEP55839.1| 23S rRNA (uracil-5-)-methyltransferase [Clostridium butyricum E4 str. BoNT E BL5262] Length = 454 Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 53/162 (32%), Positives = 84/162 (51%), Gaps = 17/162 (10%) Query: 209 IQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266 + GD + + YCG G SL L++ +V VEI +++ A+ N N++NN + S Sbjct: 305 LNGDEIVFDAYCGTGTISLFLSQKAKKVYGVEIIPQAIDNAKVNAEINNINNAEFFVGKS 364 Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCN 324 +E + + + D+ I VDPPR G D + + +A P I+Y+SC+ Sbjct: 365 EEIIPKLIDD---GIIPDV---------IVVDPPRKGCDSKLLDALGKAKPKKIVYVSCD 412 Query: 325 PDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRK 365 P +L RDL+ L S + E + D FP T+H+E LLV+K Sbjct: 413 PSTLARDLNYLESKGYKTEEVQPVDMFPMTKHVENVALLVKK 454 >gi|89097300|ref|ZP_01170190.1| hypothetical protein B14911_17015 [Bacillus sp. NRRL B-14911] gi|89088123|gb|EAR67234.1| hypothetical protein B14911_17015 [Bacillus sp. NRRL B-14911] Length = 460 Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 42/143 (29%), Positives = 69/143 (48%), Gaps = 14/143 (9%) Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276 YCG G L LA V ++I S++ A+ N A N++ + K ++ +E Sbjct: 321 YCGVGTIGLWLADQAGEVRGMDIIPESIQDAKKNAARNNIKHAKYETGKAEVLLPKWMKE 380 Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSI 334 +R I VDPPR+GLD A + + ++Y+SCNP +L +D+++ Sbjct: 381 ------------GWRPDVIVVDPPRTGLDQALLKTILKVKPKKVVYVSCNPSTLAKDIAV 428 Query: 335 LSTTHTIERLALFDQFPYTRHME 357 L + +E + D FP T H+E Sbjct: 429 LDPEYRVEYMQPVDMFPQTAHVE 451 >gi|222085092|ref|YP_002543622.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Agrobacterium radiobacter K84] gi|221722540|gb|ACM25696.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Agrobacterium radiobacter K84] Length = 416 Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 59/180 (32%), Positives = 90/180 (50%), Gaps = 16/180 (8%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 +FTQ M+E V A G + +L+ G+G FSL LAR RV AVE + ++ Sbjct: 249 GAFTQATKAAEEAMVELV-ATHIGKAKRIADLFAGSGTFSLRLAR-IGRVHAVESEEKAL 306 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 A + AA + +K V + ++ RR LK+ D + DPPR+G Sbjct: 307 AALDH--AARNTQGLKPVSIERRDL---FRRPLMAQELKNYD-------AVIFDPPRAGA 354 Query: 305 DDATVGMVQAY-PHILYISCNPDSLCRDLSILS-TTHTIERLALFDQFPYTRHMECGVLL 362 + T + ++ I+ ISCNP +L RDL+IL+ + I ++ DQF +T H+E V L Sbjct: 355 EFQTKELARSVVKKIVAISCNPLTLARDLAILTEAGYRITKVTPIDQFLWTSHVEVVVAL 414 >gi|33863009|ref|NP_894569.1| RNA methyltransferase [Prochlorococcus marinus str. MIT 9313] gi|50401516|sp|Q7V7K6|Y737_PROMM RecName: Full=Uncharacterized RNA methyltransferase PMT_0737 gi|33634926|emb|CAE20912.1| RNA methyltransferase, TrmA family [Prochlorococcus marinus str. MIT 9313] Length = 465 Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 48/175 (27%), Positives = 84/175 (48%), Gaps = 22/175 (12%) Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVN 257 ++EW+ A+ I ++++ YCG G SL +A V+ +E+ ++ A N N ++ Sbjct: 308 LIEWLSTASLDI--NIIDAYCGIGTISLPIAATGYHVIGLELHAEAITQANKNALRNSLD 365 Query: 258 NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY-- 315 NV + + + + ++ + N + +DPPR GLD + + + Sbjct: 366 NVSFL---CGDVSLLLAKKLQRN------------DVLVLDPPRKGLDQMVIKTILSIQP 410 Query: 316 PHILYISCNPDSLCRDLSIL---STTHTIERLALFDQFPYTRHMECGVLLVRKPS 367 + Y+SC+P +L RDL L + + I+ L D FP T H+EC LL R S Sbjct: 411 ERVAYLSCDPATLARDLKQLIVPNGPYQIDELQPIDFFPQTMHIECLALLTRISS 465 >gi|189347986|ref|YP_001944515.1| RNA methyltransferase, TrmA family [Chlorobium limicola DSM 245] gi|189342133|gb|ACD91536.1| RNA methyltransferase, TrmA family [Chlorobium limicola DSM 245] Length = 482 Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 57/185 (30%), Positives = 88/185 (47%), Gaps = 16/185 (8%) Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVL 235 L +R NSF Q N+ + +L GI+ D + +LYCG G +L LARH Sbjct: 298 LDFRVSANSFFQTNSSQAAVLYAEILKVA-GIRPDDTVYDLYCGTGTITLYLARHCRMAA 356 Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295 +E+ + S+ A N N + N + K+F AM +L++ D I Sbjct: 357 GLEVVESSLSDAAKNADLNGITNAVFFQTDLKDF-HAM-----LQKLENYDAPG----VI 406 Query: 296 FVDPPRSGL-DDATVGMVQAYPH-ILYISCNPDSLCRDLSILST-THTIERLALFDQFPY 352 DPPR+G+ A M++ I+Y+SCNP +L RD +S + + + D FP+ Sbjct: 407 VTDPPRAGMHPKALETMLKLRARTIVYVSCNPSNLARDGKEISRYGYRLVSVQPVDMFPH 466 Query: 353 TRHME 357 T H+E Sbjct: 467 TVHVE 471 >gi|307288671|ref|ZP_07568652.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX0109] gi|306500425|gb|EFM69761.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX0109] gi|315165278|gb|EFU09295.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX1302] Length = 456 Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 45/155 (29%), Positives = 72/155 (46%), Gaps = 14/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G L LA+ +V ++ +++ AR+N V N ++++ Sbjct: 314 VVDAYCGVGTIGLNLAKQAHQVRGMDTIPAAIDDARFNAKRLGVTNTHYAVGTAEDLLPK 373 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA--TVGMVQAYPHILYISCNPDSLCR 330 +E ++ I VDPPR+GLD T + Q ++YISCN +L R Sbjct: 374 WFKE------------GFKPDAIVVDPPRTGLDRKLLTALLKQPPKKMVYISCNVSTLAR 421 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 DL L+ + ++ L D FP T E V L RK Sbjct: 422 DLVQLAKVYQVDYLQSVDMFPQTARCEVVVKLTRK 456 >gi|293115663|ref|ZP_05792525.2| 23S rRNA (uracil-5-)-methyltransferase RumA [Butyrivibrio crossotus DSM 2876] gi|292808836|gb|EFF68041.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Butyrivibrio crossotus DSM 2876] Length = 366 Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 88/378 (23%), Positives = 162/378 (42%), Gaps = 40/378 (10%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHD-GDDLYHIMFDQQT 67 +Y + L K + +++ F N I EP YR + + D ++Y ++ + Sbjct: 4 KYSESLEYKQKMIEKLIRPFCKVNKIIGMDEPYFYRNKVHAVVGGDRKGNIYAGTYEAGS 63 Query: 68 KERMRIDYFM---PGSLLINALMIEMMATIRLEP----LLRAKLFQIDYLTSQ-SDQAIV 119 + + ID + + I A +I++M + + P R L I T++ + + +V Sbjct: 64 HKIVPIDKCLLDNEKADAIIATVIKLMKSFKYRPYNEDTGRGFLRHILIRTAEVTGEIMV 123 Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179 TL+ + + + I+ A H I + + +T + L ++ T+ G+ I Sbjct: 124 TLVVGENIFPS-KSNFIKALTAEHPEITTIVMNVNSKRTSMVLG----EKEETLYGKGYI 178 Query: 180 --------YRQIENSFTQPN--AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLAR 229 +R SF Q N ++ + AA G + ++ + Y G G + + Sbjct: 179 EDILCGKRFRISSKSFYQVNHEQTEKLYNIAIGYAALTGKE-NVFDAYSGIGTIGICASD 237 Query: 230 HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHS 289 + V VE+ + +V+ A N N++ NVK + + E M +E R Sbjct: 238 NALSVTGVELNRDAVKDALTNCKLNNLKNVKFMAGDAGEH---MEKEAASGR-------- 286 Query: 290 YRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILSTT-HTIERLAL 346 ++ +F+DPPRSG + V A ++YISC P+SL RDL + + + Sbjct: 287 -KYDVVFMDPPRSGSSLKFINSVCKMAPSKVVYISCGPESLARDLQLFKKKGYRVVECQP 345 Query: 347 FDQFPYTRHMECGVLLVR 364 D F +T H+EC VLL + Sbjct: 346 VDMFGWTGHVECVVLLTK 363 >gi|298208283|ref|YP_003716462.1| putative RNA methyltransferase [Croceibacter atlanticus HTCC2559] gi|83848204|gb|EAP86074.1| putative RNA methyltransferase [Croceibacter atlanticus HTCC2559] Length = 470 Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 57/202 (28%), Positives = 91/202 (45%), Gaps = 26/202 (12%) Query: 174 AGRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGDLL--ELYCGNGNF 223 GR I+ ++E SF Q N+ + L + + GD L +LY G G Sbjct: 279 TGRDHIFEEMEGLKFKINAKSFYQTNSK-QAYNLYKITREFADLSGDELVYDLYTGTGTI 337 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE-FTQAMRREREFNRL 282 + +A+ +V+ +E ++E A+ N N +NNV K F+Q EF Sbjct: 338 AQFVAKKAKKVVGIESVPEAIEDAKKNAQFNEINNVDFFAGDMKHVFSQ------EF--- 388 Query: 283 KDIDIHSYRFKTIFVDPPRSGL-DDATVGMVQAYPH-ILYISCNPDSLCRDLSILSTTHT 340 I+ H + I DPPR G+ D ++ P I+Y+SCN + RDL +++ + Sbjct: 389 --IEEHG-QPDIIITDPPRDGMHKDVVAQILNIKPKRIVYVSCNSATQARDLELMNAYYK 445 Query: 341 IERLALFDQFPYTRHMECGVLL 362 + + D FP T H+E V L Sbjct: 446 VTKTQAVDMFPQTHHVENVVCL 467 >gi|69248258|ref|ZP_00604692.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium DO] gi|257880209|ref|ZP_05659862.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium 1,230,933] gi|257883010|ref|ZP_05662663.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium 1,231,502] gi|257891407|ref|ZP_05671060.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium 1,231,410] gi|257893596|ref|ZP_05673249.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium 1,231,408] gi|258614397|ref|ZP_05712167.1| RNA methyltransferase [Enterococcus faecium DO] gi|260560493|ref|ZP_05832667.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium C68] gi|289565178|ref|ZP_06445630.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium D344SRF] gi|293563312|ref|ZP_06677762.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium E1162] gi|293569307|ref|ZP_06680605.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium E1071] gi|294614976|ref|ZP_06694865.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium E1636] gi|294621465|ref|ZP_06700634.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium U0317] gi|314939803|ref|ZP_07847023.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium TX0133a04] gi|314943901|ref|ZP_07850627.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium TX0133C] gi|314949998|ref|ZP_07853291.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium TX0082] gi|314953520|ref|ZP_07856432.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium TX0133A] gi|314994278|ref|ZP_07859580.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium TX0133B] gi|314995146|ref|ZP_07860262.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium TX0133a01] gi|68194473|gb|EAN08972.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium DO] gi|257814437|gb|EEV43195.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium 1,230,933] gi|257818668|gb|EEV45996.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium 1,231,502] gi|257827767|gb|EEV54393.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium 1,231,410] gi|257829975|gb|EEV56582.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium 1,231,408] gi|260073495|gb|EEW61823.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium C68] gi|289162999|gb|EFD10847.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium D344SRF] gi|291588013|gb|EFF19863.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium E1071] gi|291592107|gb|EFF23727.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium E1636] gi|291598959|gb|EFF30007.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium U0317] gi|291604764|gb|EFF34248.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium E1162] gi|313590637|gb|EFR69482.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium TX0133a01] gi|313591313|gb|EFR70158.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium TX0133B] gi|313594443|gb|EFR73288.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium TX0133A] gi|313597442|gb|EFR76287.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium TX0133C] gi|313640943|gb|EFS05523.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium TX0133a04] gi|313643645|gb|EFS08225.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium TX0082] Length = 460 Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 60/222 (27%), Positives = 98/222 (44%), Gaps = 27/222 (12%) Query: 154 RANKTKICLDRDYVDERLTVAGRTLIYRQI-ENSFT-QPNAGINVHMLEWVLAATKGIQG 211 +A KT + + DE + + G+ I QI E +F P A ++ + L +GI+ Sbjct: 252 QAQKTSLVMG----DETIHLWGKEAIEEQINEVTFDLSPRAFFQLNPQQTELLYGEGIKA 307 Query: 212 -------DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRM 264 +++ YCG G L +A+ V ++ ++ A+ N +N + Sbjct: 308 LDVQPNETIVDAYCGVGTIGLSVAKQAKEVRGMDTVPQAIADAKKNAERLGYHNTRYEVG 367 Query: 265 SSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYIS 322 ++++ E ++ I VDPPR+GLD+A + + YP ++YIS Sbjct: 368 TAEQVLPKWLNE------------GFQPDGIIVDPPRTGLDNALIQSLLKYPPKKLVYIS 415 Query: 323 CNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 CN +L RDL LS IE L D FP T E V + R Sbjct: 416 CNVSTLARDLVNLSKKFKIEYLQSVDMFPQTARCEVVVKMTR 457 >gi|312877074|ref|ZP_07737046.1| RNA methyltransferase, TrmA family [Caldicellulosiruptor lactoaceticus 6A] gi|311796124|gb|EFR12481.1| RNA methyltransferase, TrmA family [Caldicellulosiruptor lactoaceticus 6A] Length = 451 Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 58/210 (27%), Positives = 105/210 (50%), Gaps = 24/210 (11%) Query: 168 DERLTVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYC 218 +E + + G + I +I N SF Q N+ + V+ K ++ +++ ++Y Sbjct: 252 EEDILIWGSSTIKDKIGNLTFEISPKSFFQVNSMQTEVLYSQVVKYLKNVKAEIVFDIYS 311 Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278 G G S+ +A +V A+E+ + +VE A+ N N+++N++ + S+ E E Sbjct: 312 GIGTISMFVAPFCKKVYAIELVRDAVEDAKKNSKNNNISNIEFISGSA---------EIE 362 Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL- 335 RL I + + +DPPRSG + + + P+I+Y+SCNP +L RD +IL Sbjct: 363 IPRLMKSGIIP---QAVILDPPRSGCEKELLESLIEHKIPNIIYVSCNPSTLARDSNILC 419 Query: 336 STTHTIERLALFDQFPYTRHMECGVLLVRK 365 S + + + D FP T H+EC L ++ Sbjct: 420 SNGYEVVEVQPVDMFPQTFHVECVALFKKR 449 >gi|282874553|ref|ZP_06283438.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus epidermidis SK135] gi|281296692|gb|EFA89201.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus epidermidis SK135] gi|329734822|gb|EGG71127.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus epidermidis VCU028] Length = 456 Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 45/159 (28%), Positives = 70/159 (44%), Gaps = 22/159 (13%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +L+ YCG G L +A V VE+ +++ A N N + N Sbjct: 311 VLDTYCGIGTIGLYMAPLAKHVYGVEVVPQAIKDAEDNATKNQLKNTTF----------- 359 Query: 273 MRREREFNRLKDIDI----HSYRFKTIFVDPPRSGLDDA-TVGMVQAYPH-ILYISCNPD 326 E + +D+ + + + VDPPR G D+ +++ P I+YISCNP Sbjct: 360 -----ECGKAEDVILTWKSQGIKPGVVMVDPPRKGCDETFLTTLLKLNPKRIVYISCNPS 414 Query: 327 SLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 + RD IL+ + + + D FP T H+E L VRK Sbjct: 415 TQQRDAQILAEQYELVEITPVDMFPQTTHIETVALFVRK 453 >gi|154482861|ref|ZP_02025309.1| hypothetical protein EUBVEN_00557 [Eubacterium ventriosum ATCC 27560] gi|149736289|gb|EDM52175.1| hypothetical protein EUBVEN_00557 [Eubacterium ventriosum ATCC 27560] Length = 463 Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 49/154 (31%), Positives = 78/154 (50%), Gaps = 10/154 (6%) Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274 +LYCG G+ SL LA+ +VL VEI ++ A+ N N +NN + ++++ Sbjct: 315 DLYCGIGSISLFLAKKAKQVLGVEIVPEAIADAKINAKINGINNAEFFVGAAEDVVTEY- 373 Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCRDL 332 F KD + + I VDPPR G D + +V+ P ++Y+SC+ +L RD+ Sbjct: 374 ----FENHKDDE--ECKPDVIVVDPPRKGCDHKLLETIVEMNPERVVYVSCDSATLARDV 427 Query: 333 SILS-TTHTIERLALFDQFPYTRHMECGVLLVRK 365 LS + ++ + D F T H+E V L RK Sbjct: 428 KWLSENGYKLKEVTPCDMFGQTTHVESVVKLHRK 461 >gi|330752426|emb|CBL87377.1| 23S rRNA methyltransferas [uncultured Flavobacteria bacterium] Length = 469 Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 47/155 (30%), Positives = 75/155 (48%), Gaps = 17/155 (10%) Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274 +LYCG G S +A++ V+ +EI +++ A I ++ +N +K + Sbjct: 328 DLYCGLGTISQYVAQYCKIVVGIEIIDEAIQLA---IESSKINGLKNIYF---------- 374 Query: 275 REREFNRLKDIDIHSYRFK--TIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCR 330 + + N + +D+ K I +DPPR GL + ++ ILYISCNP + R Sbjct: 375 EKEDINNISKLDLLRKYGKPNAIILDPPRQGLTKKIIKVLLEIKSEKILYISCNPSTQAR 434 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 DL IL + + + D FP T H+E VLL K Sbjct: 435 DLEILCSEYEVTLSQAIDMFPQTSHVENIVLLTNK 469 >gi|302672182|ref|YP_003832142.1| 23S rRNA methyltransferase [Butyrivibrio proteoclasticus B316] gi|302396655|gb|ADL35560.1| 23S rRNA methyltransferase [Butyrivibrio proteoclasticus B316] Length = 496 Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 51/170 (30%), Positives = 86/170 (50%), Gaps = 13/170 (7%) Query: 208 GIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265 G+ G+ + +LYCG G +L +A+ V VEI ++E A+ N N + N Sbjct: 327 GLTGEETVWDLYCGIGTITLSMAKKAGHVYGVEIIPDAIEDAKKNALRNGLTNADFFCGK 386 Query: 266 SKE-----FTQAMRREREFNRLK---DIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP 316 ++E + E++ + L+ +I + I VDPPR G D A + M++ P Sbjct: 387 AEEVLPDFYANGRLEEKDKHALQSEYNISESALHPDVIVVDPPRKGCDQACLDTMLKMSP 446 Query: 317 -HILYISCNPDSLCRDLSILS-TTHTIERLALFDQFPYTRHMECGVLLVR 364 I+Y+SC+ +L RDL IL+ + ++ + D F +T H+E VLL + Sbjct: 447 DRIVYVSCDSATLARDLRILADGGYELKAIRPCDMFGHTVHVETVVLLTK 496 >gi|84029598|sp|Q8CRU6|Y1582_STAES RecName: Full=Uncharacterized RNA methyltransferase SE_1582 Length = 456 Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 45/159 (28%), Positives = 70/159 (44%), Gaps = 22/159 (13%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +L+ YCG G L +A V VE+ +++ A N N + N Sbjct: 311 VLDTYCGIGTIGLYMAPLAKHVYGVEVVPQAIKDAEDNATKNQLKNTTF----------- 359 Query: 273 MRREREFNRLKDIDI----HSYRFKTIFVDPPRSGLDDA-TVGMVQAYPH-ILYISCNPD 326 E + +D+ + + + VDPPR G D+ +++ P I+YISCNP Sbjct: 360 -----ECGKAEDVILTWKSQGIKPDVVMVDPPRKGCDETFLTTLLKLNPKRIVYISCNPS 414 Query: 327 SLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 + RD IL+ + + + D FP T H+E L VRK Sbjct: 415 TQQRDAQILAEQYELVEITPVDMFPQTTHIETVALFVRK 453 >gi|18977544|ref|NP_578901.1| RNA methyltransferase [Pyrococcus furiosus DSM 3638] gi|50401622|sp|Q8U1N4|Y1172_PYRFU RecName: Full=Uncharacterized RNA methyltransferase PF1172 gi|18893255|gb|AAL81296.1| RNA methyltransferase [Pyrococcus furiosus DSM 3638] Length = 411 Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 55/176 (31%), Positives = 89/176 (50%), Gaps = 26/176 (14%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 NSF Q N+ V++++ V K ++G+ ++++Y G G F + LA+ +V+ + + Sbjct: 250 NSFFQTNSYQAVNLVKTV---EKFVEGEKVVDMYSGVGTFGVYLAKKGMKVVGFDSNAFA 306 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 +E A N N+V EF A RE +DI F T+ VDPPR+G Sbjct: 307 IEMANKNAEINNV---------EAEFFVASDRE--------VDIKG--FDTVIVDPPRAG 347 Query: 304 LDDATVGMVQAY-PH-ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHME 357 L V + + P I+Y+SCNP + ++ L+ + IE L D FP+T H+E Sbjct: 348 LHPKLVKRLNDHGPETIVYVSCNPKTFKVNIEQLN-NYIIEELIALDMFPHTPHIE 402 >gi|312865944|ref|ZP_07726165.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus downei F0415] gi|311098348|gb|EFQ56571.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus downei F0415] Length = 453 Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 54/195 (27%), Positives = 88/195 (45%), Gaps = 18/195 (9%) Query: 175 GRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLARHFDR 233 G+T YR SF Q N + + + + + D+ ++ Y G G L LA+ + Sbjct: 271 GKT--YRISAQSFYQVNTLMAEKLYQTAIDFSNLTAEDVVIDAYSGIGTIGLSLAQEVKQ 328 Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293 V VE+ + +VE A N AN V+N V +++ A + + Sbjct: 329 VYGVEVVEKAVEDAMENARANGVSNADYVCAPAEKAMVAWSKA------------GIKPS 376 Query: 294 TIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILST-THTIERLALFDQF 350 + VDPPR GL ++ + A I YISCNP ++ RD+ + + ++ D F Sbjct: 377 AVLVDPPRKGLTESFIKASAAMQPKKITYISCNPATMARDIKLYEELGFKLTKVQPVDLF 436 Query: 351 PYTRHMECGVLLVRK 365 P T H+E VL+ R+ Sbjct: 437 PQTHHVETVVLMSRR 451 >gi|257056412|ref|YP_003134244.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Saccharomonospora viridis DSM 43017] gi|256586284|gb|ACU97417.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Saccharomonospora viridis DSM 43017] Length = 399 Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 58/203 (28%), Positives = 93/203 (45%), Gaps = 33/203 (16%) Query: 168 DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVL 227 D +L G ++ Q ++F Q + EW A+ DL Y G G F+ VL Sbjct: 223 DWKLDAHGFWQVHPQAADAFAQ-------VVREWADASPGARAWDL---YAGVGLFASVL 272 Query: 228 ARHFD---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284 A RVLAVE + +V R N+A ++ VR + +R+ + ++ Sbjct: 273 AEQVGPKGRVLAVESGRRAVADGRANLA-----GMRQVRWRCGQVEHVLRQRTDTPQV-- 325 Query: 285 IDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCRDLSILST-THTI 341 + +DPPR G V + A P ++Y++C+P +L RD++I + + Sbjct: 326 ----------VVLDPPRKGAGRVVVEAVATAGPDRVVYVACDPAALARDVAIFGEHGYRL 375 Query: 342 ERLALFDQFPYTRHMECGVLLVR 364 ++L FD FP T H+EC LL R Sbjct: 376 DKLRAFDAFPMTHHVECVALLRR 398 >gi|15675282|ref|NP_269456.1| putative RNA methyltransferase [Streptococcus pyogenes M1 GAS] gi|94990664|ref|YP_598764.1| 23S rRNA m(5)U 1939 methyltransferase [Streptococcus pyogenes MGAS10270] gi|50401663|sp|Q99Z86|Y1346_STRP1 RecName: Full=Uncharacterized RNA methyltransferase SPy_1346/M5005_Spy1098 gi|13622457|gb|AAK34177.1| putative RNA methyltransferase [Streptococcus pyogenes M1 GAS] gi|94544172|gb|ABF34220.1| 23S rRNA m(5)U 1939 methyltransferase [Streptococcus pyogenes MGAS10270] Length = 462 Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 49/184 (26%), Positives = 85/184 (46%), Gaps = 16/184 (8%) Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 SF Q N + + + +A + + D+ ++ Y G G L A+ V VE+ + +V Sbjct: 291 SFYQVNTVMAEKLYQTAIAFSDLSKDDIVIDAYSGIGTIGLSFAKTVKAVYGVEVIEAAV 350 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 A+ N A N + N V +++ ++ + I VDPPR GL Sbjct: 351 RDAQQNAALNGITNAYFVADTAEHAMATWAKD------------GIKPSVILVDPPRKGL 398 Query: 305 DDATV-GMVQAYPH-ILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVL 361 ++ + V P I Y+SCNP ++ RD+ + + ++ D FP T H+EC VL Sbjct: 399 TESFIQASVAMGPQKITYVSCNPATMARDIKRYQELGYKLAKVQPVDLFPQTHHVECVVL 458 Query: 362 LVRK 365 L+++ Sbjct: 459 LIKE 462 >gi|116329018|ref|YP_798738.1| tRNA (uracil-5-)-methyltransferase [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116121762|gb|ABJ79805.1| tRNA (uracil-5-)-methyltransferase [Leptospira borgpetersenii serovar Hardjo-bovis L550] Length = 393 Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 43/155 (27%), Positives = 69/155 (44%), Gaps = 16/155 (10%) Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271 ++++ YCG G SL +A +V+ +E S+ +A AN + NV + Q Sbjct: 253 NVVDAYCGIGTISLYVASKSKKVVGLEENPNSIRSAVGAAKANGIVNVAFTKGKVLRTLQ 312 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLC 329 E+ + +DPPR GLD T ++ ILY+SCNP++L Sbjct: 313 VALNEKS--------------DVVILDPPREGLDPETKKILLNSKIHKILYVSCNPETLL 358 Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 RD L+ ++ D FP+T H+E + R Sbjct: 359 RDAVALTKVFKYTKMTPVDLFPHTSHLESVSVFTR 393 >gi|139473609|ref|YP_001128325.1| RNA methyltransferase [Streptococcus pyogenes str. Manfredo] gi|134271856|emb|CAM30091.1| putative RNA methyltransferase [Streptococcus pyogenes str. Manfredo] Length = 462 Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 49/184 (26%), Positives = 85/184 (46%), Gaps = 16/184 (8%) Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 SF Q N + + + +A + + D+ ++ Y G G L A+ V VE+ + +V Sbjct: 291 SFYQVNTVMAEKLYQTAIAFSDLSKDDIVIDAYSGIGTIGLSFAKTVKAVYGVEVIEAAV 350 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 A+ N A N + N V +++ ++ + I VDPPR GL Sbjct: 351 RDAQQNAALNGITNAYFVADTAEHAMATWAKD------------GIKPSVILVDPPRKGL 398 Query: 305 DDATV-GMVQAYPH-ILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVL 361 ++ + V P I Y+SCNP ++ RD+ + + ++ D FP T H+EC VL Sbjct: 399 TESFIQASVAMGPQKITYVSCNPATMARDIKRYQELGYKLTKVQPVDLFPQTHHVECVVL 458 Query: 362 LVRK 365 L+++ Sbjct: 459 LIKE 462 >gi|306830729|ref|ZP_07463893.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|304427076|gb|EFM30184.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus gallolyticus subsp. gallolyticus TX20005] Length = 450 Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 43/155 (27%), Positives = 67/155 (43%), Gaps = 14/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G A V ++I ++ A+ N N +++ Sbjct: 308 VIDAYCGVGTIGFAFAAKVKSVRGMDIIPEAIADAKKNAQRMGFENTHYEAGRAEDIIPK 367 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330 +E YR + VDPPR+GLDD + + Y ++Y+SCN +L R Sbjct: 368 WYKE------------GYRADALIVDPPRTGLDDKLLNTILKYQPAKMVYVSCNTATLAR 415 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 DL LS + + + D FP+T E V LVRK Sbjct: 416 DLVKLSKVYDVHYIQSVDMFPHTARTEAVVKLVRK 450 >gi|58336957|ref|YP_193542.1| RNA methyltransferase [Lactobacillus acidophilus NCFM] gi|227903514|ref|ZP_04021319.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus acidophilus ATCC 4796] gi|58254274|gb|AAV42511.1| RNA methyltransferase family [Lactobacillus acidophilus NCFM] gi|227868401|gb|EEJ75822.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus acidophilus ATCC 4796] Length = 460 Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 40/153 (26%), Positives = 73/153 (47%), Gaps = 14/153 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L++ Y G G ++ A +V+ +E +V+ A +N+ NH+ N ++ S+++ Sbjct: 317 LIDAYSGVGTLGILAADRVKQVIGIETIPEAVKDAEHNVKLNHIKNANYIQGSTEKI--- 373 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYPH-ILYISCNPDSLCR 330 L ++ + + VDPPR+GL + + + + P +YISCNP +L + Sbjct: 374 ---------LPELQNNGVPIDALIVDPPRTGLAKSLIKTILRVKPQTFVYISCNPSTLAQ 424 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363 DL +LS + + + D P T E LV Sbjct: 425 DLVLLSEAYDVRVIQNVDMLPQTPRCEAIAKLV 457 >gi|27468500|ref|NP_765137.1| RNA methyltransferase-like protein [Staphylococcus epidermidis ATCC 12228] gi|27316047|gb|AAO05181.1|AE016749_127 RNA methyltransferase-like protein [Staphylococcus epidermidis ATCC 12228] Length = 472 Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 45/159 (28%), Positives = 70/159 (44%), Gaps = 22/159 (13%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +L+ YCG G L +A V VE+ +++ A N N + N Sbjct: 327 VLDTYCGIGTIGLYMAPLAKHVYGVEVVPQAIKDAEDNATKNQLKNTTF----------- 375 Query: 273 MRREREFNRLKDIDI----HSYRFKTIFVDPPRSGLDDA-TVGMVQAYPH-ILYISCNPD 326 E + +D+ + + + VDPPR G D+ +++ P I+YISCNP Sbjct: 376 -----ECGKAEDVILTWKSQGIKPDVVMVDPPRKGCDETFLTTLLKLNPKRIVYISCNPS 430 Query: 327 SLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 + RD IL+ + + + D FP T H+E L VRK Sbjct: 431 TQQRDAQILAEQYELVEITPVDMFPQTTHIETVALFVRK 469 >gi|329734762|gb|EGG71068.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus epidermidis VCU045] Length = 456 Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 45/159 (28%), Positives = 70/159 (44%), Gaps = 22/159 (13%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +L+ YCG G L +A V VE+ +++ A N N + N Sbjct: 311 VLDTYCGIGTIGLYMAPLAKHVYGVEVVPQAIKDAEDNATKNQLKNTTF----------- 359 Query: 273 MRREREFNRLKDIDI----HSYRFKTIFVDPPRSGLDDA-TVGMVQAYPH-ILYISCNPD 326 E + +D+ + + + VDPPR G D+ +++ P I+YISCNP Sbjct: 360 -----ECGKAEDVILTWKSQGIKPGVVMVDPPRKGCDETFLTTLLKLNPKRIVYISCNPS 414 Query: 327 SLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 + RD IL+ + + + D FP T H+E L VRK Sbjct: 415 TQQRDAQILAEQYELVEITPVDMFPQTTHIETVALFVRK 453 >gi|322387316|ref|ZP_08060926.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus infantis ATCC 700779] gi|321141845|gb|EFX37340.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus infantis ATCC 700779] Length = 455 Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 43/157 (27%), Positives = 69/157 (43%), Gaps = 14/157 (8%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L++ YCG G A+ + ++I ++E A+ N N +++E Sbjct: 308 LIDAYCGVGTIGFAFAKKVKSLRGMDIIPEAIEDAKENAKRMGYTNTHYEAGTAEEIIPR 367 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCR 330 +E YR + VDPPR+GLDD + + Y ++YISCN +L R Sbjct: 368 WYKE------------GYRADALIVDPPRTGLDDKLLDTIVKYAPEKMVYISCNVSTLAR 415 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRKPS 367 DL L + + + D FP+T E V L ++ S Sbjct: 416 DLVRLVEVYDLHYIQSVDMFPHTARTEAVVKLTKRKS 452 >gi|293367789|ref|ZP_06614438.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus epidermidis M23864:W2(grey)] gi|291318128|gb|EFE58525.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus epidermidis M23864:W2(grey)] Length = 487 Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 45/159 (28%), Positives = 70/159 (44%), Gaps = 22/159 (13%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +L+ YCG G L +A V VE+ +++ A N N + N Sbjct: 342 VLDTYCGIGTIGLYMAPLAKHVYGVEVVPQAIKDAEDNATKNQLKNTTF----------- 390 Query: 273 MRREREFNRLKDIDI----HSYRFKTIFVDPPRSGLDDA-TVGMVQAYPH-ILYISCNPD 326 E + +D+ + + + VDPPR G D+ +++ P I+YISCNP Sbjct: 391 -----ECGKAEDVILTWKSQGIKPGVVMVDPPRKGCDETFLTTLLKLNPKRIVYISCNPS 445 Query: 327 SLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 + RD IL+ + + + D FP T H+E L VRK Sbjct: 446 TQQRDAQILAEQYELVEITPVDMFPQTTHIETVALFVRK 484 >gi|86604758|ref|YP_473521.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Synechococcus sp. JA-3-3Ab] gi|86553300|gb|ABC98258.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Synechococcus sp. JA-3-3Ab] Length = 464 Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 57/186 (30%), Positives = 89/186 (47%), Gaps = 23/186 (12%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 SF Q N W++ + ++G+ +L+ YCG G +L+LAR R + VE+ Sbjct: 295 TSFFQVNTEQAEAFFTWIVDQLQ-LRGEEIVLDAYCGIGTLTLLLARRAKRAIGVEVLPA 353 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302 +V ARYN N + S++ F A+ E L DI + +DPPR Sbjct: 354 AVAQARYNAQFNGIP-------SAQFFQGAV--ETVLPTLPPADI-------VVLDPPRR 397 Query: 303 GLDDATVGMV-QAYPH-ILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTRHMEC 358 G + + ++ Q P ++YISC+P +L RDL IL ++ + + D FP T H+E Sbjct: 398 GCERQVLEILKQRQPQRLVYISCHPATLARDLQILMAEGSYRLTQWRAADFFPQTGHVEG 457 Query: 359 GVLLVR 364 L R Sbjct: 458 VAFLER 463 >gi|331269931|ref|YP_004396423.1| RNA methyltransferase, TrmA family [Clostridium botulinum BKT015925] gi|329126481|gb|AEB76426.1| RNA methyltransferase, TrmA family [Clostridium botulinum BKT015925] Length = 450 Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 59/236 (25%), Positives = 105/236 (44%), Gaps = 31/236 (13%) Query: 137 RLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINV 196 L+ LH + + +A+ ++ RDY+ E + L ++ SF Q N Sbjct: 238 ELKGILHTVNDSLSDVVQADSMEVLFGRDYIMEEVL----GLKFKISPFSFFQTNT---- 289 Query: 197 HMLEWVLAATKGIQGD-----LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251 E + + + GD + +LYCG G + A + +V+ +E+ + + +AA N Sbjct: 290 KGAEALYSIVRDFMGDAKSKVVFDLYCGTGTIGQIAAHNASKVIGIELIEEAAKAANENA 349 Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311 N +NN + + + +KDI + I +DPPR G+ + Sbjct: 350 KLNGLNNCEFLAGDVAKV------------IKDIKVKP---DIIILDPPRPGVHPDALKY 394 Query: 312 VQAY--PHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364 V + I+Y+SCNP +L DL L + +E++ + D FP+T H+E V L + Sbjct: 395 VTKFNAKDIIYVSCNPKTLVEDLKFLIKEGYKVEKVKIKDMFPHTPHVETVVRLSK 450 >gi|326773057|ref|ZP_08232341.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Actinomyces viscosus C505] gi|326637689|gb|EGE38591.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Actinomyces viscosus C505] Length = 408 Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 51/155 (32%), Positives = 82/155 (52%), Gaps = 16/155 (10%) Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVN-NVKIVRMSSKE--FTQ 271 +L+CG G+F+L LA +VL VE++ P+++ AR AA+ + + +VR + + Sbjct: 264 DLFCGVGSFALALAAPGRQVLGVEVSAPAIDGARA--AADLMGLDPALVRFEAGDARVLD 321 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLC 329 ER ++ D+ + V+PPR G+ + ++A +LY SCNP +L Sbjct: 322 PAAGERAGG-VQHPDL-------LVVNPPRRGIGEQLATRIEASGVERVLYSSCNPRTLA 373 Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 DL+ L + + R LFD FP+T H E V LVR Sbjct: 374 TDLAHLPSMRVV-RSRLFDMFPHTEHAEVLVELVR 407 >gi|227519503|ref|ZP_03949552.1| tRNA (uracil-5-)-methyltransferase [Enterococcus faecalis TX0104] gi|227073028|gb|EEI10991.1| tRNA (uracil-5-)-methyltransferase [Enterococcus faecalis TX0104] Length = 456 Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 45/155 (29%), Positives = 71/155 (45%), Gaps = 14/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G L LA+ +V ++ +++ AR+N V N ++++ Sbjct: 314 VVDAYCGVGTIGLSLAKQAHQVRGMDTIPAAIDDARFNAKRLGVTNTHYAVGTAEDLLPK 373 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA--TVGMVQAYPHILYISCNPDSLCR 330 +E ++ I VDPPR+GLD T + Q ++YISCN +L R Sbjct: 374 WFKE------------GFKPDAIVVDPPRTGLDRKLLTALLKQPPKKMVYISCNVSTLAR 421 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 DL L+ + + L D FP T E V L RK Sbjct: 422 DLVQLAKVYQVNYLQSVDMFPQTARCEVVVKLTRK 456 >gi|325977645|ref|YP_004287361.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|325177573|emb|CBZ47617.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 450 Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 43/155 (27%), Positives = 67/155 (43%), Gaps = 14/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G A V ++I ++ A+ N N +++ Sbjct: 308 VIDAYCGVGTIGFAFAAKVKSVRGMDIIPEAIADAKKNAQRMGFENTHYEAGRAEDIIPK 367 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330 +E YR + VDPPR+GLDD + + Y ++Y+SCN +L R Sbjct: 368 WYKE------------GYRADALIVDPPRTGLDDKLLNTILKYQPAKMVYVSCNTATLAR 415 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 DL LS + + + D FP+T E V LVRK Sbjct: 416 DLVKLSKVYDVHYIQSVDMFPHTARTEAVVKLVRK 450 >gi|302522366|ref|ZP_07274708.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptomyces sp. SPB78] gi|302431261|gb|EFL03077.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptomyces sp. SPB78] Length = 447 Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 53/155 (34%), Positives = 78/155 (50%), Gaps = 22/155 (14%) Query: 214 LELYCGNGNFSLVLARHFDR---VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270 L+LYCG G F+ LA VL +E +K +VE AR+N+A +H VR+ + Sbjct: 302 LDLYCGVGLFAGALADRVGEKGAVLGIETSKRAVEDARHNLA-DHPR----VRIEQGKVD 356 Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSL 328 Q + R + + D+ I +DPPR+G +TV + P I YI+C+P +L Sbjct: 357 QVLPR----TGITEADL-------IVLDPPRAGAGKSTVRHLTTLTPRRIAYIACDPAAL 405 Query: 329 CRDLS-ILSTTHTIERLALFDQFPYTRHMECGVLL 362 RDL + + L FD FP T+H EC +L Sbjct: 406 ARDLKHFAENGYRVRVLRAFDLFPMTQHFECVAIL 440 >gi|169351042|ref|ZP_02867980.1| hypothetical protein CLOSPI_01820 [Clostridium spiroforme DSM 1552] gi|169292104|gb|EDS74237.1| hypothetical protein CLOSPI_01820 [Clostridium spiroforme DSM 1552] Length = 379 Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 43/159 (27%), Positives = 76/159 (47%), Gaps = 17/159 (10%) Query: 209 IQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266 ++GD +++ YCG G +V A+ V+ VE+ + +++ A N N + N++ V + Sbjct: 229 LKGDEIVIDAYCGIGTIGMVAAKKAKEVIGVELNQDAIKDANNNARMNKIGNIRFVNDDA 288 Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCN 324 F + + ++ R + +DPPRSG + ++ ++YISC+ Sbjct: 289 SNFMAVLAKTKQ------------RVDCVIMDPPRSGSTKEFMDAIKILNPKKVVYISCD 336 Query: 325 PDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLL 362 P + RD+ S + L FD FP+T H E VLL Sbjct: 337 PTTQIRDIKYFSKLGYRGNVLYPFDMFPHTIHTETIVLL 375 >gi|322385946|ref|ZP_08059586.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus cristatus ATCC 51100] gi|321269929|gb|EFX52849.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus cristatus ATCC 51100] Length = 452 Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 43/155 (27%), Positives = 69/155 (44%), Gaps = 14/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L++ YCG G A+ + ++I ++E A+ N +N +++E Sbjct: 308 LIDAYCGVGTIGFAFAKRVKSLRGMDIIPEAIEDAKRNAKRMGFDNTLYEAGTAEEIIPR 367 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCR 330 E YR + VDPPR+GLDD + + Y ++Y+SCN +L R Sbjct: 368 WYAE------------GYRANALIVDPPRTGLDDKLLETIVRYAPEKMVYVSCNVSTLAR 415 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 DL L + + + D FP+T E V LV+K Sbjct: 416 DLVKLCQVYDVHYIQSVDMFPHTARTEAVVKLVKK 450 >gi|315150202|gb|EFT94218.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX0012] Length = 456 Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 45/155 (29%), Positives = 71/155 (45%), Gaps = 14/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G L LA+ +V ++ +++ AR+N V N ++++ Sbjct: 314 VVDAYCGVGTIGLSLAKQAHQVRGMDTIPAAIDDARFNAKRLGVTNTHYAVGTAEDLLPK 373 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA--TVGMVQAYPHILYISCNPDSLCR 330 +E ++ I VDPPR+GLD T + Q ++YISCN +L R Sbjct: 374 WFKE------------GFKPDAIVVDPPRTGLDRKLLTALLKQPPKKMVYISCNVSTLAR 421 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 DL L+ + + L D FP T E V L RK Sbjct: 422 DLVQLAKVYQVNYLQSVDMFPQTARCEVVVKLTRK 456 >gi|239982797|ref|ZP_04705321.1| RNA methyltransferase [Streptomyces albus J1074] gi|291454644|ref|ZP_06594034.1| RNA methyltransferase [Streptomyces albus J1074] gi|291357593|gb|EFE84495.1| RNA methyltransferase [Streptomyces albus J1074] Length = 433 Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 57/190 (30%), Positives = 91/190 (47%), Gaps = 23/190 (12%) Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLA-RHFDR--VL 235 +R F Q + ++E V+ +GD L+LYCG G F+ LA R D+ VL Sbjct: 253 WRVGNGGFWQVHPKAADTLVEAVMQGLLPRKGDTALDLYCGVGLFAGALADRVGDKGAVL 312 Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295 +E+ K +VE AR+N+ + VR+ + Q + R + + D+ I Sbjct: 313 GIEVTKRAVEDARHNL-----KDFDRVRVEQGKVEQVLPR----TGITETDL-------I 356 Query: 296 FVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPY 352 +DPPR+G TV + + I Y++C+P +L RDL + + + FD FP Sbjct: 357 VLDPPRAGAGKQTVARLCSLGARRIAYVACDPAALARDLGYFREGGYRVRVMRAFDLFPM 416 Query: 353 TRHMECGVLL 362 T H+EC +L Sbjct: 417 THHVECVAIL 426 >gi|19746322|ref|NP_607458.1| RNA methyltransferase [Streptococcus pyogenes MGAS8232] gi|50401606|sp|Q8P0H4|Y1360_STRP8 RecName: Full=Uncharacterized RNA methyltransferase spyM18_1360 gi|19748514|gb|AAL97957.1| putative RNA methyltransferase [Streptococcus pyogenes MGAS8232] Length = 462 Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 49/184 (26%), Positives = 85/184 (46%), Gaps = 16/184 (8%) Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 SF Q N + + + +A + + D+ ++ Y G G L A+ V VE+ + +V Sbjct: 291 SFYQVNTVMAEKLYQTAIAFSDLSKDDIVIDAYSGIGTIGLSFAKTVKAVYGVEVIEAAV 350 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 A+ N A N + N V +++ ++ + I VDPPR GL Sbjct: 351 RDAQQNAALNGITNAYFVADTAEHAMATWAKD------------GIKPSVILVDPPRKGL 398 Query: 305 DDATV-GMVQAYPH-ILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVL 361 ++ + V P I Y+SCNP ++ RD+ + + ++ D FP T H+EC VL Sbjct: 399 TESFIQASVAMGPQKITYVSCNPATMARDIKRYQELGYKLAKVQPVDLFPQTHHVECVVL 458 Query: 362 LVRK 365 L+++ Sbjct: 459 LIKE 462 >gi|319943746|ref|ZP_08018027.1| 23S rRNA (uracil-5-)-methyltransferase [Lautropia mirabilis ATCC 51599] gi|319742979|gb|EFV95385.1| 23S rRNA (uracil-5-)-methyltransferase [Lautropia mirabilis ATCC 51599] Length = 473 Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 57/184 (30%), Positives = 84/184 (45%), Gaps = 12/184 (6%) Query: 187 FTQPNAGINVHMLE-WVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 FTQ NAGIN +L V + +++L+CG GNF+L LA +V+ VE K VE Sbjct: 292 FTQVNAGINRQLLSRAVQMLDPRPEHRVVDLFCGLGNFTLPLATRARQVIGVEGVKALVE 351 Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD 305 R N AN + +F A EF+R + R + +DPPR G Sbjct: 352 RGRQNALANRHALLAPPGNDGVQFRVA--NLFEFDRAAWQALG--RVDRLLIDPPRDGAL 407 Query: 306 DATVGMVQAYPH-----ILYISCNPDSLCRDLSILSTTHT--IERLALFDQFPYTRHMEC 358 + P ++Y+SCNP +L RDL ++ + + + FP+T H+E Sbjct: 408 AVARVLAALPPEQRPARMVYVSCNPATLARDLGLMVNEGKWRVRMAGVANMFPHTAHVES 467 Query: 359 GVLL 362 LL Sbjct: 468 IALL 471 >gi|85712955|ref|ZP_01043994.1| SAM-dependent methyltransferase [Idiomarina baltica OS145] gi|85693193|gb|EAQ31152.1| SAM-dependent methyltransferase [Idiomarina baltica OS145] Length = 446 Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 56/207 (27%), Positives = 97/207 (46%), Gaps = 33/207 (15%) Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYC 218 +C D T+ G L++ + +F Q NA +N M++ L + ++L+L+ Sbjct: 255 VCFDE-------TIDGDRLVF--MPGNFIQVNAKVNQQMVKQALNWLAPQAEDEILDLFA 305 Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV--KIVRMSSKEFTQAMRRE 276 G GNF+L LAR V AVE N AA ++NV + +S+ + ++ +++ Sbjct: 306 GIGNFTLPLARRVKSVTAVEGVSAMTTQLAANAAAADLSNVHAQTFDLSTDQVSRLLKKG 365 Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP-----HILYISCNPDSLCRD 331 F+ + +DP R+G + G+ Q I+Y+SC+PD+L RD Sbjct: 366 ---------------FQRVLLDPARAGAEKVCQGIAQLEADKQPVQIVYVSCSPDTLARD 410 Query: 332 LS-ILSTTHTIERLALFDQFPYTRHME 357 +L + I ++L D F T H+E Sbjct: 411 SRWLLDNGYEITHISLVDMFVQTHHIE 437 >gi|333023959|ref|ZP_08452023.1| putative RNA methyltransferase [Streptomyces sp. Tu6071] gi|332743811|gb|EGJ74252.1| putative RNA methyltransferase [Streptomyces sp. Tu6071] Length = 433 Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 52/155 (33%), Positives = 77/155 (49%), Gaps = 22/155 (14%) Query: 214 LELYCGNGNFSLVLARHFDR---VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270 L+LYCG G F+ LA VL +E +K +VE AR+N+A + VR+ + Sbjct: 288 LDLYCGVGLFAGALADRVGEKGAVLGIETSKRAVEDARHNLAEH-----PRVRIEQGKVD 342 Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSL 328 Q + R + + D+ I +DPPR+G +TV + P I YI+C+P +L Sbjct: 343 QVLPR----TGITEADL-------IVLDPPRAGAGKSTVRHLTTLTPRRIAYIACDPAAL 391 Query: 329 CRDLS-ILSTTHTIERLALFDQFPYTRHMECGVLL 362 RDL + + L FD FP T+H EC +L Sbjct: 392 ARDLKHFAENGYRVRVLRAFDLFPMTQHFECVAIL 426 >gi|315221991|ref|ZP_07863902.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus anginosus F0211] gi|315188957|gb|EFU22661.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus anginosus F0211] Length = 452 Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 42/155 (27%), Positives = 70/155 (45%), Gaps = 14/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L++ YCG G A+ + ++I ++E A+ N +N +++ Sbjct: 308 LIDAYCGVGTIGFAFAKKVKSLRGMDIIPEAIEDAKRNAKKMGFDNAYYEAGTAESIIPR 367 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCR 330 +E YR + VDPPR+GLD+ + + Y ++Y+SCN +L R Sbjct: 368 WYKE------------GYRADALIVDPPRTGLDEKLLETIVRYAPKKMVYVSCNVSTLAR 415 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 DL LS + + + D FP+T E V LV+K Sbjct: 416 DLVQLSKVYDVHYIQSVDMFPHTARTEAVVKLVKK 450 >gi|78357737|ref|YP_389186.1| RNA methyltransferase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78220142|gb|ABB39491.1| 23S rRNA m(5)U-747 methyltransferase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 457 Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 61/240 (25%), Positives = 102/240 (42%), Gaps = 22/240 (9%) Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 R L D E + +H + A KT ++ E+L GRT + Sbjct: 235 RQLGDLLAESGEGITSFIHGERRSPVQAAYAEKTLYSTGDSHLTEQLN--GRT--FTMAP 290 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 ++F Q N +L A G G L +LYCG G L +A V +E+++ +V Sbjct: 291 HAFFQTNTAAT-EILSRTAADYAGQGGVLWDLYCGVGTMGLGMADQVTSVTGMEVSEEAV 349 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 + A N +++ QA + RL + H + + DPPR+G+ Sbjct: 350 QFATLN-------------ARNQQVPQARFLAGDVRRL--LIRHKEKPDIVITDPPRAGM 394 Query: 305 -DDATVGMVQAYP-HILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362 D ++ P I+YISC+P + RD + L+ ++ +E + D FP++ H+E L Sbjct: 395 HPDVLSALISRAPRKIVYISCDPATQARDAAALTDSYRLEAVQPVDMFPHSAHIESVALF 454 >gi|260161759|emb|CAZ39303.1| hypothetical protein [Streptococcus suis] gi|313575341|emb|CBR26870.1| SAM-dependent methyltransferase related to tRNA (uracil-5-)-methyltransferase [Streptococcus phage phi-SsUD.1] Length = 451 Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 45/155 (29%), Positives = 74/155 (47%), Gaps = 15/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ Y G G L A+ V VE+ + +V ++ N A N ++NV V S++ Q Sbjct: 308 VIDAYSGIGTIGLSFAKQVKHVYGVEVVEKAVLDSQKNAARNGIDNVTYVCDSAESAMQK 367 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330 + + IFVDPPR GL ++ + P I+YISCN ++ R Sbjct: 368 WVAD------------GVKPTVIFVDPPRKGLTESFIKASTSVKPEKIVYISCNVATMAR 415 Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364 D+ + + + ++ D FP T H+EC LLV+ Sbjct: 416 DIKLYEELGYKLTKVQPADLFPNTHHVECVALLVK 450 >gi|57641051|ref|YP_183529.1| 23S rRNA (uracil-5-)-methyltransferase [Thermococcus kodakarensis KOD1] gi|57159375|dbj|BAD85305.1| 23S rRNA (uracil-5-)-methyltransferase [Thermococcus kodakarensis KOD1] Length = 421 Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 59/204 (28%), Positives = 93/204 (45%), Gaps = 31/204 (15%) Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNF 223 Y+ ER+ + Y NSF Q N+ + L ++ A + +L+LY G G F Sbjct: 244 YIHERIG----EVTYLIHPNSFFQTNS----YALPLLIKAVENFASGEMILDLYAGVGTF 295 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 + LA+ +V +E+ +VE A N N+V+ V R + Sbjct: 296 GVWLAKRRFQVEGIELNPFAVEIANKNAEINNVDATFKV-----------------GRAE 338 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQA-YPHILYISCNPDSLCRDL-SILSTTHTI 341 + I Y T+ VDPPR GL + + ++ ++Y+SCNP + D + L +TI Sbjct: 339 ETPIGKY--DTVVVDPPRKGLKEVAETLARSEIGKVVYVSCNPKAFKLDYENHLKKAYTI 396 Query: 342 ERLALFDQFPYTRHMECGVLLVRK 365 E L D FP+T H+E + L RK Sbjct: 397 EDAVLIDMFPHTPHVEAVISLKRK 420 >gi|167762843|ref|ZP_02434970.1| hypothetical protein BACSTE_01201 [Bacteroides stercoris ATCC 43183] gi|167699183|gb|EDS15762.1| hypothetical protein BACSTE_01201 [Bacteroides stercoris ATCC 43183] Length = 480 Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 59/211 (27%), Positives = 97/211 (45%), Gaps = 29/211 (13%) Query: 172 TVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGDLL--ELYCGNG 221 T G+ I+ ++E SF Q N+ + L V G+ G+ L +LY G G Sbjct: 279 TFKGKDHIFEEMEGLRFKVGPKSFYQTNSE-QAYTLYKVARNFAGLTGNELVYDLYTGTG 337 Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE-FTQAMRREREFN 280 + ++ +V+ +E ++E A+ N N + N K+ TQ Sbjct: 338 TIANFVSGQARQVIGIEYVPEAIEDAKVNSEINGIRNTLFFAGDMKDMLTQDF------- 390 Query: 281 RLKDIDIHSY-RFKTIFVDPPRSGLDDATVGMVQ-AYPH-ILYISCNPDSLCRDLSILST 337 I+ Y R I DPPR+G+ V ++ A P I+Y+SCNP + RDL +L Sbjct: 391 ------INEYGRPDVIITDPPRAGMHQDVVDVILFAEPKRIVYVSCNPATQARDLQLLDA 444 Query: 338 THTIERLALFDQFPYTRHMECGVLL-VRKPS 367 + ++ + D FP+T H+E VLL ++ P+ Sbjct: 445 KYRVKAVQPVDMFPHTHHVENVVLLELKNPA 475 >gi|71910911|ref|YP_282461.1| tRNA (uracil-5-)-methyltransferase [Streptococcus pyogenes MGAS5005] gi|71853693|gb|AAZ51716.1| tRNA (uracil-5-)-methyltransferase [Streptococcus pyogenes MGAS5005] gi|290770987|emb|CBK33775.1| 23S rRNA m(5)U 1939 methyltransferase [Streptococcus pyogenes] Length = 451 Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 49/184 (26%), Positives = 85/184 (46%), Gaps = 16/184 (8%) Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 SF Q N + + + +A + + D+ ++ Y G G L A+ V VE+ + +V Sbjct: 280 SFYQVNTVMAEKLYQTAIAFSDLSKDDIVIDAYSGIGTIGLSFAKTVKAVYGVEVIEAAV 339 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 A+ N A N + N V +++ ++ + I VDPPR GL Sbjct: 340 RDAQQNAALNGITNAYFVADTAEHAMATWAKD------------GIKPSVILVDPPRKGL 387 Query: 305 DDATV-GMVQAYPH-ILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVL 361 ++ + V P I Y+SCNP ++ RD+ + + ++ D FP T H+EC VL Sbjct: 388 TESFIQASVAMGPQKITYVSCNPATMARDIKRYQELGYKLAKVQPVDLFPQTHHVECVVL 447 Query: 362 LVRK 365 L+++ Sbjct: 448 LIKE 451 >gi|319757720|gb|ADV69662.1| hypothetical protein SSUJS14_0565 [Streptococcus suis JS14] Length = 453 Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 46/155 (29%), Positives = 74/155 (47%), Gaps = 15/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ Y G G L A+ V VE+ + +V ++ N A N ++NV V S++ Q Sbjct: 308 VIDAYSGIGTIGLSFAKQVKHVYGVEVVEKAVLDSQKNAARNGIDNVTYVCDSAESAMQK 367 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330 + + IFVDPPR GL ++ + P I+YISCN ++ R Sbjct: 368 WVAD------------GVKPTVIFVDPPRKGLTESFIKASTSVKPEKIVYISCNVATMAR 415 Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364 D+ + + + ++ D FP T H+EC VLL R Sbjct: 416 DIKLYEELGYKLTKVQPADLFPNTHHVECVVLLQR 450 >gi|227432576|ref|ZP_03914556.1| TrmA family tRNA (uracil-5-)-methyltransferase [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227351659|gb|EEJ41905.1| TrmA family tRNA (uracil-5-)-methyltransferase [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 463 Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 54/183 (29%), Positives = 87/183 (47%), Gaps = 25/183 (13%) Query: 185 NSFTQPNAGINVHMLEWVLAATKG---IQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241 NSF Q N + + LAA K +++ Y G G + +A +VL VE+ Sbjct: 290 NSFYQVNP--QTTEVLYALAAQKADLKPTDTVIDAYSGIGTIGISVASRVKKVLGVEVVP 347 Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301 +V A+ N+ N+++N + + + +F + ++ + +FVDPPR Sbjct: 348 GAVADAQLNLQVNNISNAEYILADAP---------VQFKKWQE---QGLKPDVVFVDPPR 395 Query: 302 SGLD----DATVGMVQAYPHILYISCNPDSLCRD-LSILSTTHTIERLAL-FDQFPYTRH 355 GL +AT M + I+YISCNP +L RD + I+ + I+ L DQFP T H Sbjct: 396 RGLTTSLINATTDM--SPEKIVYISCNPVTLSRDAVEIIENGYHIDGSVLPVDQFPQTSH 453 Query: 356 MEC 358 +E Sbjct: 454 VES 456 >gi|328887534|emb|CAJ67227.2| putative tRNA (Uracil-5-)-methyltransferase [Clostridium difficile] Length = 453 Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 56/222 (25%), Positives = 95/222 (42%), Gaps = 31/222 (13%) Query: 154 RANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD- 212 + ++ ++ RDY+ E + L ++ SF Q N E + + + GD Sbjct: 255 QCDELRVLYGRDYIQEEIL----GLKFKISPFSFFQTNT----KGAEVLYSIARDFIGDY 306 Query: 213 ----LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268 + +LY G G+ V+A +V +EI + +V AA N N + N + + + Sbjct: 307 NDKVVFDLYSGTGSIGQVMAGAAKKVYGIEIVEEAVVAANENAKLNGLTNCEFIAGDVAK 366 Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPD 326 + ++ + + I VDPPR G+ + + + I+YISCNP Sbjct: 367 VVKDLKDKPDL---------------IIVDPPRPGIHKDAIRDICGFGAKEIVYISCNPK 411 Query: 327 SLCRDL-SILSTTHTIERLALFDQFPYTRHMECGVLLVRKPS 367 SL DL + I+ + D FP T H+EC L+ R S Sbjct: 412 SLVVDLVDFKGYGYEIKMVKCMDMFPNTPHVECIALIQRVKS 453 >gi|327389388|gb|EGE87733.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae GA04375] Length = 451 Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 46/156 (29%), Positives = 78/156 (50%), Gaps = 15/156 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ Y G G L +A+H V VE+ +VE ++ N NH++N V +++ A Sbjct: 308 VIDAYSGIGTIGLSVAKHVKEVYGVEVIPEAVENSKKNAQLNHISNTHYVCDTAE---NA 364 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCR 330 M+ N LK+ + I VDPPR GL ++ + I YISCN ++ R Sbjct: 365 MK-----NWLKE----GIQPTVILVDPPRKGLTESFIKASSQTGADRIAYISCNVATMAR 415 Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVRK 365 D+ + + ++++ D FP T H+E LLV++ Sbjct: 416 DIKLYQELGYELKKVQPVDLFPQTHHVEAVSLLVKE 451 >gi|126697975|ref|YP_001086872.1| putative tRNA (Uracil-5-)-methyltransferase [Clostridium difficile 630] Length = 455 Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 56/222 (25%), Positives = 95/222 (42%), Gaps = 31/222 (13%) Query: 154 RANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD- 212 + ++ ++ RDY+ E + L ++ SF Q N E + + + GD Sbjct: 257 QCDELRVLYGRDYIQEEIL----GLKFKISPFSFFQTNT----KGAEVLYSIARDFIGDY 308 Query: 213 ----LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268 + +LY G G+ V+A +V +EI + +V AA N N + N + + + Sbjct: 309 NDKVVFDLYSGTGSIGQVMAGAAKKVYGIEIVEEAVVAANENAKLNGLTNCEFIAGDVAK 368 Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPD 326 + ++ + + I VDPPR G+ + + + I+YISCNP Sbjct: 369 VVKDLKDKPDL---------------IIVDPPRPGIHKDAIRDICGFGAKEIVYISCNPK 413 Query: 327 SLCRDL-SILSTTHTIERLALFDQFPYTRHMECGVLLVRKPS 367 SL DL + I+ + D FP T H+EC L+ R S Sbjct: 414 SLVVDLVDFKGYGYEIKMVKCMDMFPNTPHVECIALIQRVKS 455 >gi|223932232|ref|ZP_03624236.1| RNA methyltransferase, TrmA family [Streptococcus suis 89/1591] gi|223899213|gb|EEF65570.1| RNA methyltransferase, TrmA family [Streptococcus suis 89/1591] Length = 453 Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 46/155 (29%), Positives = 74/155 (47%), Gaps = 15/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ Y G G L A+ V VE+ + +V ++ N A N ++NV V S++ Q Sbjct: 308 VIDAYSGIGTIGLSFAKQVKHVYGVEVVEKAVLDSQKNAARNGIDNVTYVCDSAESAMQK 367 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330 + + IFVDPPR GL ++ + P I+YISCN ++ R Sbjct: 368 WVAD------------GVKPTVIFVDPPRKGLTESFIKASTSVKPEKIVYISCNVATMAR 415 Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364 D+ + + + ++ D FP T H+EC VLL R Sbjct: 416 DIKLYEELGYKLTKVQPTDLFPNTHHVECVVLLQR 450 >gi|268318102|ref|YP_003291821.1| RNA methyltransferase, TrmA family [Rhodothermus marinus DSM 4252] gi|262335636|gb|ACY49433.1| RNA methyltransferase, TrmA family [Rhodothermus marinus DSM 4252] Length = 466 Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 55/153 (35%), Positives = 75/153 (49%), Gaps = 15/153 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE-FTQ 271 + +LYCG G S+ +A H V+ VE+ +VE AR N AAN + N V E T Sbjct: 323 VYDLYCGTGTISIFIAPHVRHVVGVELVASAVENARANAAANGITNCTFVAGDLLEVLTP 382 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYPH-ILYISCNPDSLC 329 A R H R + VDPPR+G+ V + Q P +Y+SCNP + Sbjct: 383 AFVR-----------THG-RPDVVIVDPPRAGMHPKVVRRIGQLRPERFVYVSCNPQTQA 430 Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362 RDL +L + IE + D FP+T H+E V L Sbjct: 431 RDLKLLRDLYRIEAVQPVDLFPHTDHVESVVAL 463 >gi|284042250|ref|YP_003392590.1| RNA methyltransferase, TrmA family [Conexibacter woesei DSM 14684] gi|283946471|gb|ADB49215.1| RNA methyltransferase, TrmA family [Conexibacter woesei DSM 14684] Length = 456 Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 58/214 (27%), Positives = 99/214 (46%), Gaps = 22/214 (10%) Query: 156 NKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGI--NVHMLEWVLAATKGIQGDL 213 T++ DY++E L + +R N+F Q N + ++ L A+ G + L Sbjct: 259 GDTELIAGSDYLEEELN----GMSFRVSPNAFFQVNTEMAEKLYALAGDYASLAGFE-RL 313 Query: 214 LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273 +LYCG G L +A + +EI + ++ A N N ++N R + + A+ Sbjct: 314 YDLYCGIGTVGLTMAPRAGELWGLEIIEDAIGDAIANARLNEIDN---ARFFAGDVRTAL 370 Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCRD 331 R + D+ + VDPPR+GL V ++ A P ++YISCNP +L + Sbjct: 371 RLLVDTAGSPDV---------VVVDPPRAGLSRKVVRRIIDASPKRLVYISCNPTTLAPN 421 Query: 332 LSILS-TTHTIERLALFDQFPYTRHMECGVLLVR 364 + L+ + + ++ D FP T H+EC L R Sbjct: 422 GAQLAEAGYVLRKVRPVDMFPQTPHIECVALFER 455 >gi|168204451|ref|ZP_02630456.1| 23S rRNA -methyltransferase RumA [Clostridium perfringens E str. JGS1987] gi|170664028|gb|EDT16711.1| 23S rRNA -methyltransferase RumA [Clostridium perfringens E str. JGS1987] Length = 455 Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 45/158 (28%), Positives = 73/158 (46%), Gaps = 17/158 (10%) Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271 ++ + YCG G +L L++ +V VEI +++ A N N V NV+ S+ Sbjct: 311 EVFDAYCGTGTITLFLSQKAKKVYGVEIIPQAIDNAWINAKENKVENVEFFVGESEVV-- 368 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLC 329 + D+ + + VDPPR G D + + I+Y+SC+P +L Sbjct: 369 ----------IPDLINKGVKADVVVVDPPRKGCDKKLLDAITNIDAKKIVYVSCDPSTLG 418 Query: 330 RDLSILSTT--HTIERLALFDQFPYTRHMECGVLLVRK 365 RDL +L T+E + D FP T H+E L++K Sbjct: 419 RDLKVLEENGYKTLE-VQPVDMFPNTSHVENVAKLIKK 455 >gi|37522703|ref|NP_926080.1| hypothetical protein gll3134 [Gloeobacter violaceus PCC 7421] gi|50401751|sp|Q7NGN4|Y3134_GLOVI RecName: Full=Uncharacterized RNA methyltransferase gll3134 gi|35213705|dbj|BAC91075.1| gll3134 [Gloeobacter violaceus PCC 7421] Length = 457 Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 48/156 (30%), Positives = 74/156 (47%), Gaps = 20/156 (12%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G SL LAR V+ +E SVE AR N N + N + + + + Sbjct: 319 VVDAYCGIGTLSLPLARAARAVVGIESHVRSVEQARQNARINGIENCRFLAGTVEAL--- 375 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCR 330 L D+ R + VDPPR G D + ++ A P ++Y+SCNP +L R Sbjct: 376 ---------LPDL-----RADIVVVDPPRKGCDPEVLEAILHAVPMRVVYVSCNPATLAR 421 Query: 331 DLS-ILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 DL +++ + + + D F T H+EC L R Sbjct: 422 DLKRLVAGGYCLVGVQPVDLFAQTHHVECVATLERS 457 >gi|323466981|gb|ADX70668.1| RNA methyltransferase family protein [Lactobacillus helveticus H10] Length = 460 Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 44/156 (28%), Positives = 76/156 (48%), Gaps = 15/156 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L++ Y G G ++ A +V+ +E +V+ A++N+ NH+ N ++ S Sbjct: 317 LIDAYSGVGTLGILAADRVKQVIGIETIPEAVKDAQHNVELNHIKNADYIQGSV------ 370 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330 E+ LK+ + + VDPPR+GL + ++Q P +YISCNP +L + Sbjct: 371 ---EKVLPELKNSGV---SIDALIVDPPRTGLAKKLIKTLLQVKPETFVYISCNPSTLAQ 424 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMEC-GVLLVRK 365 DL +LS + + + D P T E L++RK Sbjct: 425 DLVLLSEVYDVRVIQNVDMLPQTPRCEAIAKLVLRK 460 >gi|293373836|ref|ZP_06620180.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides ovatus SD CMC 3f] gi|292631235|gb|EFF49869.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides ovatus SD CMC 3f] Length = 462 Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 55/201 (27%), Positives = 94/201 (46%), Gaps = 26/201 (12%) Query: 175 GRTLIYRQIEN--------SFTQPNA--GINVHMLEWVLAATKGIQGDLLELYCGNGNFS 224 G+ I+ ++E SF Q N+ N++ + A G + + +LY G G + Sbjct: 272 GKDHIFEEMEGLRFKVGPKSFYQTNSEQAYNLYKIARNFAELTGNEL-VYDLYTGTGTIA 330 Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE-FTQAMRREREFNRLK 283 ++R +V+ +E ++E A+ N N + N K+ TQ Sbjct: 331 NFVSRQARQVIGIEYVPEAIEDAKVNAEINDIKNAIFYAGDMKDMLTQDF---------- 380 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQ-AYPH-ILYISCNPDSLCRDLSILSTTHTI 341 I+ H R I DPPR+G+ + ++ A P I+Y+SCNP + RDL +L+ + + Sbjct: 381 -INQHG-RPDVIITDPPRAGMHQDVIDVILFAEPKRIVYVSCNPATQARDLQLLNEKYKV 438 Query: 342 ERLALFDQFPYTRHMECGVLL 362 + + D FP+T H+E VLL Sbjct: 439 KAVQPVDMFPHTHHVENVVLL 459 >gi|297626449|ref|YP_003688212.1| SAM-dependent methyltransferase related to tRNA (tRNA (uracil-5-)-methyltransferase) [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296922214|emb|CBL56784.1| SAM-dependent methyltransferase related to tRNA (tRNA (uracil-5-)-methyltransferase) [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 392 Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 60/234 (25%), Positives = 104/234 (44%), Gaps = 36/234 (15%) Query: 137 RLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQI--------ENSFT 188 ++ D+L + + +LI + +C+ +D T+ G ++ Q+ + F Sbjct: 175 KMLDSLAGQVHGDELIVATAASGVCV----IDSGRTLMGEAVVTEQVGTHSFRARADGFW 230 Query: 189 QPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA 247 QP+ + +L A G+ L+LYCG G F+ L RV +E+ P++ A Sbjct: 231 QPHRLAPGLLTSQMLLALDPRPGEHALDLYCGVGVFAAALDDAGCRVRGIEMDGPAIRLA 290 Query: 248 RYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307 R N+ +F A R +R +R + +R + +DPPR+G Sbjct: 291 RTNV-------------PRAQFV-AGRVDRVLSRGR------HRADLVVLDPPRAGAGKR 330 Query: 308 TVGMVQAY-P-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHMEC 358 V + P I Y++C+P +L RDL S +++ + FD FP T H+EC Sbjct: 331 AVDQIAGLRPRRIAYVACDPAALARDLASFARHDYSVTNIKGFDLFPMTHHVEC 384 >gi|320547084|ref|ZP_08041380.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus equinus ATCC 9812] gi|320448210|gb|EFW88957.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus equinus ATCC 9812] Length = 455 Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 45/157 (28%), Positives = 74/157 (47%), Gaps = 19/157 (12%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ Y G G L A++ V VE+ + +VE A+ N A N + N V S++ Sbjct: 308 VIDAYSGIGTIGLSFAKNVKAVYGVEVIEEAVEDAKRNAALNGITNAHYVADSAEHAMAT 367 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD----ATVGMVQAYPHILYISCNPDSL 328 + + + I VDPPR GL + A+V M + YISCNP ++ Sbjct: 368 WSK------------NGIKPSVILVDPPRKGLTENFIKASVAMQPE--KVTYISCNPATM 413 Query: 329 CRDLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364 RD+ + + ++++ D FP T H+E VLL + Sbjct: 414 ARDIKLYQELGYKLQKVQPVDLFPNTHHVETVVLLSK 450 >gi|218262095|ref|ZP_03476683.1| hypothetical protein PRABACTJOHN_02355 [Parabacteroides johnsonii DSM 18315] gi|218223595|gb|EEC96245.1| hypothetical protein PRABACTJOHN_02355 [Parabacteroides johnsonii DSM 18315] Length = 475 Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 51/168 (30%), Positives = 82/168 (48%), Gaps = 18/168 (10%) Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 SF Q N+G + L V G+ G+ + +LY G G + ++R +V+ +E + Sbjct: 321 SFYQTNSG-QAYELYKVAREFAGLTGNEMVYDLYTGTGTIANFVSRQAKKVIGIEYVPEA 379 Query: 244 VEAARYNIAANHVNNVKIVRMSSKE-FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302 +E A+ N A N + N K+ TQ I+ H R I DPPR+ Sbjct: 380 IEDAKVNSALNKIENTLFYAGDMKDILTQDF-----------INQHG-RPDVIITDPPRA 427 Query: 303 GL-DDATVGMVQAYPH-ILYISCNPDSLCRDLSILSTTHTIERLALFD 348 G+ DD ++ A P I+Y+SCNP + RDLS+LS + ++++ D Sbjct: 428 GMHDDVINTILFAEPERIVYVSCNPATQARDLSLLSVKYAVKKVQPVD 475 >gi|210632813|ref|ZP_03297546.1| hypothetical protein COLSTE_01449 [Collinsella stercoris DSM 13279] gi|210159372|gb|EEA90343.1| hypothetical protein COLSTE_01449 [Collinsella stercoris DSM 13279] Length = 437 Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 50/155 (32%), Positives = 74/155 (47%), Gaps = 21/155 (13%) Query: 214 LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273 ++LYCG G F+L LAR + V AVE P+V R N+ ++ NV ++ + Sbjct: 299 IDLYCGAGTFTLPLARRCEFVSAVESYGPAVRDLRRNLDIANITNVDVIGGDAV------ 352 Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRD 331 REF +D D+ + VDPPR+GL + ++ + + Y+SC+P +L RD Sbjct: 353 ---REFPD-EDADV-------LVVDPPRAGLAPEAIDLIASTSARDVAYVSCDPATLARD 401 Query: 332 LSILSTTHTIERL--ALFDQFPYTRHMECGVLLVR 364 L T + D FP T H E V L R Sbjct: 402 LRRFVEEGTFRPVWATPVDLFPQTFHCETVVRLTR 436 >gi|320528187|ref|ZP_08029352.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Solobacterium moorei F0204] gi|320131535|gb|EFW24100.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Solobacterium moorei F0204] Length = 434 Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 45/152 (29%), Positives = 72/152 (47%), Gaps = 15/152 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L+E YCG G +L+ + V +E +VE A N N++ N + + A Sbjct: 293 LVEAYCGIGTMALMAKDKANVVYGIESVPSAVENATNNAKLNNITNTEFI------CDDA 346 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYPH-ILYISCNPDSLCR 330 R+ K +D + VDPPRSG+DD + + P I+YISCNP +L + Sbjct: 347 AHGLRKIAMKKTVD-------CLLVDPPRSGMDDEMLNTIMHVLPKKIIYISCNPSTLAK 399 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLL 362 +L +L + + + +D FP T +E +L Sbjct: 400 NLKVLKQRYHVVTVIPYDLFPQTPLVESITVL 431 >gi|318059413|ref|ZP_07978136.1| RNA methyltransferase [Streptomyces sp. SA3_actG] gi|318077256|ref|ZP_07984588.1| RNA methyltransferase [Streptomyces sp. SA3_actF] Length = 447 Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 52/155 (33%), Positives = 77/155 (49%), Gaps = 22/155 (14%) Query: 214 LELYCGNGNFSLVLARHFDR---VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270 L+LYCG G F+ LA VL +E +K +VE AR+N+A + VR+ + Sbjct: 302 LDLYCGVGLFAGALADRVGEKGAVLGIETSKRAVEDARHNLAEH-----PRVRIEQGKVD 356 Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSL 328 Q + R + + D+ I +DPPR+G +TV + P I YI+C+P +L Sbjct: 357 QVLPR----TGITEADL-------IVLDPPRAGAGKSTVRHLTTLTPRRIAYIACDPAAL 405 Query: 329 CRDLS-ILSTTHTIERLALFDQFPYTRHMECGVLL 362 RDL + + L FD FP T+H EC +L Sbjct: 406 ARDLKHFAENGYRVRVLRAFDLFPMTQHFECVAIL 440 >gi|319427485|gb|ADV55559.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Shewanella putrefaciens 200] Length = 389 Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 52/186 (27%), Positives = 83/186 (44%), Gaps = 23/186 (12%) Query: 185 NSFTQPNAGINVHML----EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240 SF Q N + + EWV + L +L+CG G F L A + +EI Sbjct: 220 KSFFQTNPQVAAQLYQTAREWV---AEFAPKSLWDLFCGVGGFGLHCATKDIALTGIEIE 276 Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300 ++ A+ + + V+ + + S +F Q N D+ I V+PP Sbjct: 277 AEAISCAQMSANLMGLEKVQFMALDSTDFAQGK------NAADKPDL-------IIVNPP 323 Query: 301 RSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMEC 358 R G+ +A + + ILY SCNP +L +DL + H + ++ LFD FP+T H E Sbjct: 324 RRGIGEALCQSLSEFAPKAILYSSCNPKTLAKDLEHIQGYH-LTKVQLFDLFPHTDHFEV 382 Query: 359 GVLLVR 364 +LV+ Sbjct: 383 LAMLVK 388 >gi|116493460|ref|YP_805195.1| tRNA (uracil-5-)-methyltransferase related enzyme [Pediococcus pentosaceus ATCC 25745] gi|116103610|gb|ABJ68753.1| 23S rRNA m(5)U-1939 methyltransferase [Pediococcus pentosaceus ATCC 25745] Length = 491 Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 47/157 (29%), Positives = 78/157 (49%), Gaps = 16/157 (10%) Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271 +L++ Y G G L LA V ++ + ++E A N N + N + EF Sbjct: 348 NLVDAYSGVGTIGLSLAAQAKEVRGMDNIESAIEDANENAKINGIEN------AHYEFGT 401 Query: 272 AMRREREFNRLKDIDIHS-YRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSL 328 A + ++ +H+ ++ +I VDPPR GLD+ + ++++ P H Y+SCNP +L Sbjct: 402 AEKVLPKW-------LHAGFKPNSIVVDPPRVGLDNKLITAILESAPEHFTYVSCNPSTL 454 Query: 329 CRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 RDL + + +E + D FP T +E V L RK Sbjct: 455 ARDLVRIVEKYDVEYIQSIDMFPQTARVEAVVKLKRK 491 >gi|257084323|ref|ZP_05578684.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis Fly1] gi|256992353|gb|EEU79655.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis Fly1] Length = 456 Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 45/155 (29%), Positives = 72/155 (46%), Gaps = 14/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G L LA+ +V ++ +++ AR+N V N ++++ Sbjct: 314 VVDAYCGVGTIGLSLAKQAHQVRGMDTIPAAIDDARFNAKRLGVMNTHYAVGTAEDLLPK 373 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA--TVGMVQAYPHILYISCNPDSLCR 330 +E ++ I VDPPR+GLD T + Q ++YISCN +L R Sbjct: 374 WFKE------------GFKPDAIVVDPPRTGLDRKLLTALLKQPPKKMVYISCNVSTLAR 421 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 DL L+ + ++ L D FP T E V L RK Sbjct: 422 DLVQLAKVYQVDYLQSVDMFPQTARCEVVVKLTRK 456 >gi|146421938|ref|XP_001486912.1| hypothetical protein PGUG_00289 [Meyerozyma guilliermondii ATCC 6260] Length = 568 Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 58/224 (25%), Positives = 114/224 (50%), Gaps = 25/224 (11%) Query: 153 GRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWV--LAATKGIQ 210 G ++KT + + E++ + I++ N F Q N+ I ++++V ++KGI+ Sbjct: 355 GESSKTCLTDSKKVCTEKIGES----IFQFPANEFFQVNSSILPDVVDFVRYSMSSKGIR 410 Query: 211 GDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHV---NNVKIVRMS 265 ++++ YCG+G F + LA +V+ +EI++ +++ A +N N + +V+ + + Sbjct: 411 -NIVDAYCGSGFFGISLANDVKNGKVVGIEISRQAIKYATHNAKLNGLAVPQHVQFIEGT 469 Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY-PH-ILYISC 323 S A+ + F K + + +DP R G D++ + + + P I+Y+SC Sbjct: 470 SN----AIFKHESFLSAK----LNPEETMVIIDPSRKGSDESFLQQLHEFGPKLIVYVSC 521 Query: 324 NPDSLCRDLSILST---THTIERLALFDQFPYTRHMECGVLLVR 364 N S RDL + +T+ + FD FP T+H+EC +L R Sbjct: 522 NVFSQARDLQYFTAMLQKYTVHEVIGFDFFPQTKHVECVAVLER 565 >gi|253681845|ref|ZP_04862642.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum D str. 1873] gi|253561557|gb|EES91009.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum D str. 1873] Length = 450 Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 59/236 (25%), Positives = 106/236 (44%), Gaps = 31/236 (13%) Query: 137 RLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINV 196 L+ LH + + +A+ ++ RDY+ E + L ++ SF Q N Sbjct: 238 ELKGILHTVNDSLSDVVQADSMEVLFGRDYIMEEVL----GLKFKISPFSFFQTNT---- 289 Query: 197 HMLEWVLAATKGIQGD-----LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251 E + + + GD + +LYCG G + A + ++V+ +E+ + + +AA N Sbjct: 290 KGAEALYSIVRDFMGDAKSKVVFDLYCGTGTIGQIAAHNAEKVIGIELIEEAAKAANENA 349 Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311 N +NN + + + +KDI + I +DPPR G+ + Sbjct: 350 KLNCLNNCEFLAGDVAKV------------IKDIKVKP---DIIILDPPRPGVHPDALKY 394 Query: 312 VQAY--PHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364 V + I+Y+SCNP +L DL L + +E++ + D FP+T H+E V L + Sbjct: 395 VTKFNANDIIYVSCNPKTLVEDLKFLIKEGYKVEKVKVKDMFPHTPHVESVVKLSK 450 >gi|261418755|ref|YP_003252437.1| RNA methyltransferase, TrmA family [Geobacillus sp. Y412MC61] gi|319765571|ref|YP_004131072.1| RNA methyltransferase, TrmA family [Geobacillus sp. Y412MC52] gi|261375212|gb|ACX77955.1| RNA methyltransferase, TrmA family [Geobacillus sp. Y412MC61] gi|317110437|gb|ADU92929.1| RNA methyltransferase, TrmA family [Geobacillus sp. Y412MC52] Length = 467 Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 54/208 (25%), Positives = 93/208 (44%), Gaps = 21/208 (10%) Query: 155 ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWV--LAATKGIQGD 212 ++T++ +Y+ E L L + +F Q N V + + V AA G + Sbjct: 269 GDETEVLAGDEYIQETLG----DLSFELSSRAFFQLNPLQTVKLYDEVKKAAALTGTE-R 323 Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G L LAR V ++ ++E A+ N + N V ++ + Sbjct: 324 IVDAYCGVGTIGLWLARDAKEVRGMDTIPEAIEDAQNNAKKHGFTNTHYVVGKAEYWLPK 383 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330 + ++ I VDPPR G D A + ++ P ++Y+SCNP SL R Sbjct: 384 WVK------------GGWKPDVIIVDPPRVGCDRALLETILHVRPKTVVYVSCNPSSLAR 431 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMEC 358 DL L+ + ++ + D FP+T H+E Sbjct: 432 DLDALAAQYRVDYIQPVDMFPHTAHVEA 459 >gi|288871274|ref|ZP_06117059.2| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium hathewayi DSM 13479] gi|288864049|gb|EFC96347.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium hathewayi DSM 13479] Length = 514 Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 49/188 (26%), Positives = 86/188 (45%), Gaps = 18/188 (9%) Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAV 237 +R SF Q N + +L G+ G +++ YCG G +V ++ DRV+ V Sbjct: 332 FRISSKSFYQVNP-VQTEVLYRKAIELAGLTGKETVIDAYCGIGTIGIVASQEADRVIGV 390 Query: 238 EIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFV 297 E+ + +V A N N + N + + F M E +D+ +F+ Sbjct: 391 ELNRDAVRDAAQNAKINGIKNAQFYCNDAGAFMSKMADNGEH-----VDV-------VFM 438 Query: 298 DPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCRDLSILSTTHTIERLAL-FDQFPYTR 354 DPPRSG + + + + P ++Y+SC P++L RDL + ++A D FP Sbjct: 439 DPPRSGSTEEFIQSVAKIKPEKVVYVSCGPETLARDLGVFRKMGYEAKVAWGVDMFPQAA 498 Query: 355 HMECGVLL 362 H+E +++ Sbjct: 499 HVESVIMM 506 >gi|15613460|ref|NP_241763.1| RNA methyltransferase [Bacillus halodurans C-125] gi|50401683|sp|Q9KEF5|Y897_BACHD RecName: Full=Uncharacterized RNA methyltransferase BH0897 gi|10173512|dbj|BAB04616.1| RNA methyltransferase [Bacillus halodurans C-125] Length = 463 Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 43/154 (27%), Positives = 74/154 (48%), Gaps = 15/154 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G L LA V +++ ++E A+ N + NV+ +++ + Sbjct: 318 VIDAYCGVGTIGLWLADQAREVRGMDVIAEAIEDAKENAKRQGITNVQYEVGKAEKIIPS 377 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYPH-ILYISCNPDSLCR 330 R S+ I VDPPR+G DD + + Q P I+Y+SCNP +L + Sbjct: 378 WVR------------SSWIPDVIVVDPPRTGCDDQLLKTIKQTKPKRIVYVSCNPSTLAK 425 Query: 331 DLSILS-TTHTIERLALFDQFPYTRHMECGVLLV 363 D+ L + + ++ + D FP+T +E LLV Sbjct: 426 DVEQLQRSGYKVKNIQPVDMFPWTAQVESCTLLV 459 >gi|326798666|ref|YP_004316485.1| RNA methyltransferase, TrmA family [Sphingobacterium sp. 21] gi|326549430|gb|ADZ77815.1| RNA methyltransferase, TrmA family [Sphingobacterium sp. 21] Length = 476 Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 52/205 (25%), Positives = 97/205 (47%), Gaps = 18/205 (8%) Query: 164 RDYVDERLTVAGRT--LIYRQIENSFTQPNA--GINVHMLEWVLAATKGIQGDLLELYCG 219 +D++ E +++ R+ L ++ SF Q N+ ++ + A KG + + +LY G Sbjct: 280 KDHIFEEMSLPNRSVRLRFKIGAKSFYQTNSEQAYELYRITKEFANLKGHEL-VYDLYTG 338 Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279 G + +A +V+ +E ++E A+ N + N + N K+ EF Sbjct: 339 AGTIANFVALDVKQVIGIEYVPSAIEDAKLNSSINGIENTLFFAGDMKDVLTP-----EF 393 Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVG--MVQAYPHILYISCNPDSLCRDLSILST 337 + I DPPR+G+ + + P I+Y+SCN + RDL++L+ Sbjct: 394 TATHG------KPDLIITDPPRAGMHPDVIARLLELEAPRIVYVSCNAATQARDLALLNE 447 Query: 338 THTIERLALFDQFPYTRHMECGVLL 362 + ++R+ D FP+T+H+E VLL Sbjct: 448 KYLVKRIKPVDMFPHTQHVENVVLL 472 >gi|306831715|ref|ZP_07464872.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325978654|ref|YP_004288370.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|304426140|gb|EFM29255.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325178582|emb|CBZ48626.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 453 Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 47/157 (29%), Positives = 73/157 (46%), Gaps = 19/157 (12%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ Y G G L A++ V VE+ + +VE A+ N A N + N V S++ Sbjct: 308 VIDAYSGIGTIGLSFAKNVKAVYGVEVIEEAVEDAKRNAALNGITNAHYVADSAEHAMAT 367 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD----ATVGMVQAYPHILYISCNPDSL 328 ++ + I VDPPR GL + A+V M I YISCNP S+ Sbjct: 368 WSKD------------GIKPSVILVDPPRKGLTENFIKASVAMQPE--KITYISCNPASM 413 Query: 329 CRDLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364 RD+ + + + ++ D FP T H+E VL+ R Sbjct: 414 ARDIKLYQELGYKLIKVQPVDLFPNTHHVETVVLMSR 450 >gi|120597721|ref|YP_962295.1| 23S rRNA methyluridine methyltransferase [Shewanella sp. W3-18-1] gi|143582979|sp|A1RGE6|RUMB_SHESW RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName: Full=23S rRNA(M-5-U747)-methyltransferase gi|120557814|gb|ABM23741.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Shewanella sp. W3-18-1] Length = 389 Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 52/186 (27%), Positives = 83/186 (44%), Gaps = 23/186 (12%) Query: 185 NSFTQPNAGINVHML----EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240 SF Q N + + EWV + L +L+CG G F L A + +EI Sbjct: 220 KSFFQTNPQVAAQLYQTAREWV---AEFAPKSLWDLFCGVGGFGLHCATKDIALTGIEIE 276 Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300 ++ A+ + + V+ + + S +F Q N D+ I V+PP Sbjct: 277 AEAISCAQISANLMGLEKVQFMALDSTDFAQGK------NAADKPDL-------IIVNPP 323 Query: 301 RSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMEC 358 R G+ +A + + ILY SCNP +L +DL + H + ++ LFD FP+T H E Sbjct: 324 RRGIGEALCQSLSEFAPRAILYSSCNPKTLAKDLEHIQGYH-LTKVQLFDLFPHTDHFEV 382 Query: 359 GVLLVR 364 +LV+ Sbjct: 383 LAMLVK 388 >gi|227550544|ref|ZP_03980593.1| tRNA (uracil-5-)-methyltransferase [Enterococcus faecium TX1330] gi|257897054|ref|ZP_05676707.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium Com12] gi|293378745|ref|ZP_06624903.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium PC4.1] gi|227180445|gb|EEI61417.1| tRNA (uracil-5-)-methyltransferase [Enterococcus faecium TX1330] gi|257833619|gb|EEV60040.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium Com12] gi|292642673|gb|EFF60825.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium PC4.1] Length = 460 Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 59/222 (26%), Positives = 98/222 (44%), Gaps = 27/222 (12%) Query: 154 RANKTKICLDRDYVDERLTVAGRTLIYRQI-ENSFT-QPNAGINVHMLEWVLAATKGIQG 211 +A KT + + DE + V G+ I QI E +F P A ++ + L +GI+ Sbjct: 252 QAQKTSLVMG----DETIHVWGKEAIEEQINEVTFDLSPRAFFQLNPQQTELLYGEGIKA 307 Query: 212 -------DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRM 264 +++ YCG G L +A+ V ++ ++ A+ N +N + Sbjct: 308 LDAQPDETIVDAYCGVGTIGLSVAKKVKEVRGMDTVPQAIADAKRNAERLGYHNTRYEVG 367 Query: 265 SSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYIS 322 ++++ E ++ I VDPPR+GLD+A + + +P ++YIS Sbjct: 368 TAEQVLPKWLNE------------GFQPDGIIVDPPRTGLDNALIQSLLKFPPKKLVYIS 415 Query: 323 CNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 CN +L RDL LS +E L D FP T E V + R Sbjct: 416 CNVSTLARDLVHLSKKFNVEYLQSVDMFPQTARCEVVVKMTR 457 >gi|119897391|ref|YP_932604.1| 23S rRNA 5-methyluridine methyltransferase [Azoarcus sp. BH72] gi|143580584|sp|A1K4G2|RUMA_AZOSB RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|119669804|emb|CAL93717.1| putative 23S rRNA (Uracil-5-) methyltransferase [Azoarcus sp. BH72] Length = 433 Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 55/183 (30%), Positives = 83/183 (45%), Gaps = 16/183 (8%) Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 FTQ N IN ++ + + G+ + +L+CG GNFSL +AR V+ VE ++ V Sbjct: 261 FTQVNVHINRLLIRRAMQLLQPAPGERIADLFCGLGNFSLPIARRGATVVGVEGSEALVA 320 Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD 305 A N N ++ S EF A F+ +D + +DPPR G Sbjct: 321 RALENARRNGLD-------SRTEFHAA----NLFDATEDSLAALGPLDKLLIDPPREGAI 369 Query: 306 DA--TVGMVQAYPHILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTRHMECGVL 361 VG Q I+Y+SCNP +L RD ++L + + + + FP T H+E L Sbjct: 370 AVVKAVGPAQQPARIVYVSCNPATLARDAAVLVHEKGYVLRGAGIANMFPQTSHVESIAL 429 Query: 362 LVR 364 R Sbjct: 430 FER 432 >gi|24372567|ref|NP_716609.1| 23S rRNA methyluridine methyltransferase [Shewanella oneidensis MR-1] gi|24346584|gb|AAN54054.1|AE015542_10 RNA methyltransferase, TrmA family [Shewanella oneidensis MR-1] Length = 382 Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 49/186 (26%), Positives = 85/186 (45%), Gaps = 23/186 (12%) Query: 185 NSFTQPNAGINVHML----EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240 SF Q N + + EWV + L +L+CG G F L A + +EI Sbjct: 211 KSFFQTNPHVAAKLYQTAREWV---GEFAPKSLWDLFCGVGGFGLHCASKDIPLTGIEIE 267 Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300 ++ A+ + ++NV+ + + S +F + D + + I V+PP Sbjct: 268 AEAIACAKMSAQMMGLDNVQFMALDSTDFAKG-------------DAAATKPDLIIVNPP 314 Query: 301 RSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMEC 358 R G+ ++ + + ILY SCNP +L +DL + + + R+ LFD FP++ H E Sbjct: 315 RRGIGESLCDALSEFAPRAILYSSCNPKTLAKDL-VHIRGYQLTRVQLFDLFPHSDHFEV 373 Query: 359 GVLLVR 364 +LV+ Sbjct: 374 LAMLVK 379 >gi|24379246|ref|NP_721201.1| putative RNA methyltransferase [Streptococcus mutans UA159] gi|50401575|sp|Q8DUV4|Y788_STRMU RecName: Full=Uncharacterized RNA methyltransferase SMU_788 gi|24377161|gb|AAN58507.1|AE014920_5 putative RNA methyltransferase [Streptococcus mutans UA159] Length = 451 Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 44/155 (28%), Positives = 72/155 (46%), Gaps = 15/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ Y G G L A+ V VE+ + +V A N A N++ NV V S+++ + Sbjct: 308 VIDAYSGIGTIGLSFAKKVKDVYGVEVIEAAVRDAEKNAALNNITNVHYVADSAEKAMAS 367 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCR 330 + + I VDPPR GL ++ + A I YISC P ++ R Sbjct: 368 WSK------------RGIKPDVILVDPPRKGLTESFIEASTAMQPRKITYISCAPATMAR 415 Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364 D+ + + + ++ D FP T H+EC LLV+ Sbjct: 416 DVKLYEELGYKLVKVQPVDLFPQTHHVECVALLVK 450 >gi|304389387|ref|ZP_07371351.1| TrmA family RNA methyltransferase [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|304327376|gb|EFL94610.1| TrmA family RNA methyltransferase [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 504 Score = 69.7 bits (169), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 60/206 (29%), Positives = 96/206 (46%), Gaps = 18/206 (8%) Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSL 225 V E + V T YR SF Q + + + A I+G + ELY G+G FSL Sbjct: 216 VRETVHVDDLTFTYRIFSGSFWQTDRRAPAILAAALRDALGQIEGFEAWELYSGSGLFSL 275 Query: 226 VLARHF---DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNR 281 LA+ R+ VE P+ ++A YN+A + V++ R + S + ++ + Sbjct: 276 FLAQGLGAKGRLTTVEGDGPATKSAAYNLAKAGFDQVEVRRGNVSPQLLSSLPMGEMVS- 334 Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDA-TVGMVQAYPHILYI-SCNPDSLCRDLSIL-STT 338 + + DPPRSGL A T + +P ++ + SC+P S RDL + Sbjct: 335 ---------QGTLVVADPPRSGLGKAVTRAICAQHPDLVALFSCDPVSCARDLETMRQLG 385 Query: 339 HTIERLALFDQFPYTRHMECGVLLVR 364 + ++ +FD FPYT H+E LL + Sbjct: 386 YRVKTWRVFDLFPYTSHVETVALLSK 411 >gi|189439124|ref|YP_001954205.1| SAM-dependent methyltransferase [Bifidobacterium longum DJO10A] gi|189427559|gb|ACD97707.1| SAM-dependent methyltransferase [Bifidobacterium longum DJO10A] Length = 422 Score = 69.7 bits (169), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 57/208 (27%), Positives = 99/208 (47%), Gaps = 25/208 (12%) Query: 169 ERLTVAGRTLIYRQIENSF----TQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNF 223 E++T+ G T Y+ N F Q + H++ V + ++ +LY G+G F Sbjct: 228 EQVTINGTTFDYQVDANGFWQVHRQAPIALGTHVINLVNGQLQSAADAVIWDLYSGSGLF 287 Query: 224 SLVLARHFD---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 +L LA R+L+VE A+ +V+ A+ N+ A ++N+V R + + Sbjct: 288 TLPLATMTGERTRMLSVEGARVAVKNAQRNLRAMNLNDVDA-------------RAGDVS 334 Query: 281 RLKD-IDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSIL-S 336 R D + H + + +DPPR+G + A ++YI+C+P SL RD + L Sbjct: 335 RTLDHVPAHLAKPDVVVLDPPRAGARAKVCRQIAAAGASSVVYIACDPTSLARDTATLIG 394 Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVR 364 + ++ + FD +P T H+E VL R Sbjct: 395 EGYELKDIRAFDIYPMTHHVETVVLFTR 422 >gi|143811455|sp|Q8EI67|RUMB_SHEON RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName: Full=23S rRNA(M-5-U747)-methyltransferase Length = 386 Score = 69.7 bits (169), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 49/186 (26%), Positives = 85/186 (45%), Gaps = 23/186 (12%) Query: 185 NSFTQPNAGINVHML----EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240 SF Q N + + EWV + L +L+CG G F L A + +EI Sbjct: 215 KSFFQTNPHVAAKLYQTAREWV---GEFAPKSLWDLFCGVGGFGLHCASKDIPLTGIEIE 271 Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300 ++ A+ + ++NV+ + + S +F + D + + I V+PP Sbjct: 272 AEAIACAKMSAQMMGLDNVQFMALDSTDFAKG-------------DAAATKPDLIIVNPP 318 Query: 301 RSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMEC 358 R G+ ++ + + ILY SCNP +L +DL + + + R+ LFD FP++ H E Sbjct: 319 RRGIGESLCDALSEFAPRAILYSSCNPKTLAKDL-VHIRGYQLTRVQLFDLFPHSDHFEV 377 Query: 359 GVLLVR 364 +LV+ Sbjct: 378 LAMLVK 383 >gi|303231827|ref|ZP_07318541.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Veillonella atypica ACS-049-V-Sch6] gi|302513505|gb|EFL55533.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Veillonella atypica ACS-049-V-Sch6] Length = 487 Score = 69.7 bits (169), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 47/158 (29%), Positives = 75/158 (47%), Gaps = 21/158 (13%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK-IVRMSSKEFTQ 271 +++ YCG G SL LA V+ +EI +P++ AR N N +N + IV ++ E + Sbjct: 340 VIDAYCGTGTISLFLAHKAKHVIGIEIVEPAIINARENARNNGYDNTEFIVADAAVEMPK 399 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD----ATVGMVQAYPHILYISCNPDS 327 + R I DP R+G + + GM I+Y+SCNP + Sbjct: 400 LYKA-------------GVRPDVIVFDPIRAGCKEEVLTSAAGMEPK--RIVYVSCNPAT 444 Query: 328 LCRDLSILS-TTHTIERLALFDQFPYTRHMECGVLLVR 364 + RD+ IL+ + ++ + D FP T H+E LL R Sbjct: 445 MARDIEILTHYGYELKEVQPVDMFPMTAHVEAVALLTR 482 >gi|257898994|ref|ZP_05678647.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium Com15] gi|257836906|gb|EEV61980.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium Com15] Length = 460 Score = 69.7 bits (169), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 59/222 (26%), Positives = 98/222 (44%), Gaps = 27/222 (12%) Query: 154 RANKTKICLDRDYVDERLTVAGRTLIYRQI-ENSFT-QPNAGINVHMLEWVLAATKGIQG 211 +A KT + + DE + V G+ I QI E +F P A ++ + L +GI+ Sbjct: 252 QAQKTSLVMG----DETIHVWGKEAIEEQINEVTFDLSPRAFFQLNPQQTELLYGEGIKA 307 Query: 212 -------DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRM 264 +++ YCG G L +A+ V ++ ++ A+ N +N + Sbjct: 308 LDAQPDETIVDAYCGVGTIGLSVAKKVKEVRGMDTVPQAIADAKRNAERLGYHNTRYEVG 367 Query: 265 SSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYIS 322 ++++ E ++ I VDPPR+GLD+A + + +P ++YIS Sbjct: 368 TAEQVLPKWLNE------------GFQPDGIIVDPPRTGLDNALIQSLLKFPPKKLVYIS 415 Query: 323 CNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 CN +L RDL LS +E L D FP T E V + R Sbjct: 416 CNVSTLARDLVHLSKKFNVEYLQSVDMFPQTARCEVVVKMTR 457 >gi|168216552|ref|ZP_02642177.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium perfringens NCTC 8239] gi|182381468|gb|EDT78947.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium perfringens NCTC 8239] Length = 455 Score = 69.7 bits (169), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 45/158 (28%), Positives = 73/158 (46%), Gaps = 17/158 (10%) Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271 ++ + YCG G +L L++ +V VEI +++ A N N V NV+ S+ Sbjct: 311 EVFDAYCGTGTITLFLSQKAKKVYGVEIIPQAIDNAWINAKENKVENVEFFVGESEVV-- 368 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLC 329 + D+ + + VDPPR G D + + I+Y+SC+P +L Sbjct: 369 ----------IPDLINKGVKADVVVVDPPRKGCDKKLLDSITNIDAKKIVYVSCDPSTLG 418 Query: 330 RDLSILSTT--HTIERLALFDQFPYTRHMECGVLLVRK 365 RDL +L T+E + D FP T H+E L++K Sbjct: 419 RDLQVLEENGYKTLE-VQPVDMFPNTSHVENVAKLIKK 455 >gi|297835104|ref|XP_002885434.1| RNA methyltransferase family protein [Arabidopsis lyrata subsp. lyrata] gi|297331274|gb|EFH61693.1| RNA methyltransferase family protein [Arabidopsis lyrata subsp. lyrata] Length = 559 Score = 69.7 bits (169), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 55/214 (25%), Positives = 87/214 (40%), Gaps = 32/214 (14%) Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD----LLELYCGNG 221 Y + +T R L ++ NSF Q N +L ++ + G++GD +L+L+CG G Sbjct: 351 YGKDTITEVLRGLTFQISANSFFQTNTH-QAEVLYKLIEESAGLKGDGSEVVLDLFCGTG 409 Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281 L LAR + E+ ++ A N N + N ++ + + N Sbjct: 410 TIGLTLARRAKHIYGYEVVPQAITDAHKNAQINGIENATFIQGDLNKIGEDFG-----NN 464 Query: 282 LKDIDIHSYRFKTIFVDPPRSG--LDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTH 339 DI + DP R G + + P I+Y+SCNP + RDL L H Sbjct: 465 FPKPDI-------VISDPNRPGMHMKLIKFLLKLKSPRIIYVSCNPATCARDLDYL--CH 515 Query: 340 TIERLAL-----------FDQFPYTRHMECGVLL 362 +E + D FP+T H+EC L Sbjct: 516 GVEEKNIKGCYKLMSVQPVDMFPHTPHIECVCFL 549 >gi|257888569|ref|ZP_05668222.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium 1,141,733] gi|257824623|gb|EEV51555.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium 1,141,733] Length = 460 Score = 69.7 bits (169), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 59/222 (26%), Positives = 98/222 (44%), Gaps = 27/222 (12%) Query: 154 RANKTKICLDRDYVDERLTVAGRTLIYRQI-ENSFT-QPNAGINVHMLEWVLAATKGIQG 211 +A KT + + DE + V G+ I QI E +F P A ++ + L +GI+ Sbjct: 252 QAQKTSLVMG----DETIHVWGKEAIEEQINEVTFDLSPRAFFQLNPQQTELLYGEGIKA 307 Query: 212 -------DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRM 264 +++ YCG G L +A+ V ++ ++ A+ N +N + Sbjct: 308 LGAQPDETIVDAYCGVGTIGLSVAKKVKEVRGMDTVPQAIADAKRNAERLGYHNTRYEVG 367 Query: 265 SSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYIS 322 ++++ E ++ I VDPPR+GLD+A + + +P ++YIS Sbjct: 368 TAEQVLPKWLNE------------GFQPDGIIVDPPRTGLDNALIQSLLKFPPKKLVYIS 415 Query: 323 CNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 CN +L RDL LS +E L D FP T E V + R Sbjct: 416 CNVSTLARDLVHLSKKFNVEYLQSVDMFPQTARCEVVVKMTR 457 >gi|197284573|ref|YP_002150445.1| 23S rRNA methyluridine methyltransferase [Proteus mirabilis HI4320] gi|194682060|emb|CAR41582.1| putative 23S rRNA (uracil-5-)-methyltransferase [Proteus mirabilis HI4320] Length = 377 Score = 69.3 bits (168), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 46/157 (29%), Positives = 75/157 (47%), Gaps = 18/157 (11%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L +L+CG+G F L A+ + +EI+ ++E AR + + +V+ + S F A Sbjct: 237 LWDLFCGSGGFGLHCAQKNTELTGIEISPEAIECARLSANELGLEHVEFQALDSTGFALA 296 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCR 330 E + V+PPR G+ + + + ILY SCN ++ + Sbjct: 297 KESVPEL---------------VLVNPPRRGIGETLCDYLNSMKPRFILYSSCNAQTMAK 341 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRKPS 367 D+ LS + I+R+ LFD FP+T H E LLV + S Sbjct: 342 DIQQLS-HYRIDRVQLFDMFPHTAHYEVLTLLVLQQS 377 >gi|291532749|emb|CBL05862.1| 23S rRNA m(5)U-1939 methyltransferase [Megamonas hypermegale ART12/1] Length = 373 Score = 69.3 bits (168), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 45/155 (29%), Positives = 70/155 (45%), Gaps = 15/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G SL LA+ +V +EI ++ A N N++ N + + + + Sbjct: 207 VIDGYCGTGTISLFLAQKAKKVYGMEIVPEAIRDAIANARDNNIRNAEFLTGDAAKLMPQ 266 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330 + R+ R I DPPR+G + A I+Y+SCNP SL R Sbjct: 267 LYRK------------GLRPDVIVTDPPRAGCAPEVLKTFAAMRPKRIVYVSCNPASLAR 314 Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364 D+ IL + + D FP T H+E LLV+ Sbjct: 315 DIGILDELGYKATEIQPVDMFPQTGHVESVCLLVK 349 >gi|146294142|ref|YP_001184566.1| 23S rRNA methyluridine methyltransferase [Shewanella putrefaciens CN-32] gi|167012647|sp|A4Y9Y4|RUMB_SHEPC RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName: Full=23S rRNA(M-5-U747)-methyltransferase gi|145565832|gb|ABP76767.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Shewanella putrefaciens CN-32] Length = 389 Score = 69.3 bits (168), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 52/186 (27%), Positives = 83/186 (44%), Gaps = 23/186 (12%) Query: 185 NSFTQPNAGINVHML----EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240 SF Q N + + EWV + L +L+CG G F L A + +EI Sbjct: 220 KSFFQTNPQVAAQLYQTAREWV---AEFAPKSLWDLFCGVGGFGLHCATKDIALTGIEIE 276 Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300 ++ A+ + + V+ + + S +F Q N D+ I V+PP Sbjct: 277 AEAISCAQISANLMGLEKVQFMALDSTDFAQGK------NAADKPDL-------IIVNPP 323 Query: 301 RSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMEC 358 R G+ +A + + ILY SCNP +L +DL + H + ++ LFD FP+T H E Sbjct: 324 RRGIGEALCQSLSEFAPKAILYSSCNPKTLAKDLEHIQGYH-LTKVQLFDLFPHTDHFEV 382 Query: 359 GVLLVR 364 +LV+ Sbjct: 383 LAMLVK 388 >gi|303229651|ref|ZP_07316439.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Veillonella atypica ACS-134-V-Col7a] gi|302515776|gb|EFL57730.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Veillonella atypica ACS-134-V-Col7a] Length = 576 Score = 69.3 bits (168), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 57/205 (27%), Positives = 95/205 (46%), Gaps = 20/205 (9%) Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNF 223 Y D +T + L + +SF Q N + + LA ++GD +++ YCG G Sbjct: 292 YGDGTITDHIKDLRFTLSPHSFFQVNPEQTTVLYDQALAYAD-LKGDEIVIDAYCGTGTI 350 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK-IVRMSSKEFTQAMRREREFNRL 282 SL LA V+ +EI +P++ AR N N +N + IV ++ E + + Sbjct: 351 SLFLAHKAKHVIGIEIVEPAIINARENARRNGYDNTEFIVADAAVEMPKLYKA------- 403 Query: 283 KDIDIHSYRFKTIFVDPPRSGL-DDATVGMVQAYPH-ILYISCNPDSLCRDLSILS-TTH 339 R I DP R+G ++ P+ I+Y+SCNP ++ RD+ IL+ + Sbjct: 404 ------GVRPDVIVFDPIRAGCKEEVLTSAASMEPNRIVYVSCNPATMARDIEILTHYGY 457 Query: 340 TIERLALFDQFPYTRHMECGVLLVR 364 ++ + D FP T H+E LL + Sbjct: 458 ELKEVQPVDMFPMTAHVETVALLSK 482 >gi|156743278|ref|YP_001433407.1| (Uracil-5)-methyltransferase [Roseiflexus castenholzii DSM 13941] gi|156234606|gb|ABU59389.1| (Uracil-5)-methyltransferase [Roseiflexus castenholzii DSM 13941] Length = 405 Score = 69.3 bits (168), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 50/177 (28%), Positives = 82/177 (46%), Gaps = 18/177 (10%) Query: 185 NSFTQPNAGINVHMLEWV--LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 N+F Q N + + +LE V A G G + +LY G G +L +ARH DR++ +E + Sbjct: 235 NTFFQNNVWLLMPLLEAVRDAVAACGHAGAIADLYSGVGAIALHIARHADRIVCIESSGE 294 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302 SV AR N ++ ++ + A+R + + F + DPPR+ Sbjct: 295 SVRLARENSVRAGFEHIAVIE---ADVADALRAQT-----------TGAFDVVVADPPRT 340 Query: 303 GLDD--ATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHME 357 GL + I+Y+SCNP + D+ L + + + L +D FP T H+E Sbjct: 341 GLGPEVCRELLRLRPRRIVYVSCNPLTQRDDIRALQSGYRLVLLQGYDMFPQTPHLE 397 >gi|24215676|ref|NP_713157.1| tRNA (uracil-5-)-methyltransferase [Leptospira interrogans serovar Lai str. 56601] gi|50401762|sp|Q8F201|Y2977_LEPIN RecName: Full=Uncharacterized RNA methyltransferase LA_2977 gi|24196843|gb|AAN50175.1| tRNA (uracil-5-)-methyltransferase [Leptospira interrogans serovar Lai str. 56601] Length = 454 Score = 69.3 bits (168), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 50/195 (25%), Positives = 92/195 (47%), Gaps = 11/195 (5%) Query: 173 VAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD 232 V G+ +R +SF QPN +L+++ L++L+CG+G FS + A F Sbjct: 265 VCGKE--FRVPFDSFFQPNPEGFQPILDFIEKEIPDSFDHLVDLFCGSGFFSRIFAHKFL 322 Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292 ++ ++ + S+E AR ++ + ++ S + + ++LK + S Sbjct: 323 KITGIDSIESSLEIARKQMSLD------FPKIDSSYLKVDLFSKNSSSKLK-VLFSSSDK 375 Query: 293 KTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQF 350 + DPPR+GL + + ++ + Y+SCNP S DL L I+++ + D + Sbjct: 376 DVLIADPPRAGLGEFVLDALKDSKVSYFFYVSCNPTSQKSDLWKLKDFFQIQKILITDPY 435 Query: 351 PYTRHMECGVLLVRK 365 P T H+E L RK Sbjct: 436 PQTPHLESVAFLKRK 450 >gi|260584770|ref|ZP_05852515.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Granulicatella elegans ATCC 700633] gi|260157427|gb|EEW92498.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Granulicatella elegans ATCC 700633] Length = 455 Score = 69.3 bits (168), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 60/215 (27%), Positives = 91/215 (42%), Gaps = 22/215 (10%) Query: 155 ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-- 212 ++ K+ D E L T+ R SF Q N I +L G+ GD Sbjct: 256 GSQKKVLFGEDAFQEVLMEFTFTISSR----SFFQVNT-IQTEVLYHEAIQAAGLTGDET 310 Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G SL A+ +V A+EI +++ A+ N N ++NV + Sbjct: 311 VVDAYCGIGTMSLAFAKRAKKVYAMEIVPDAIQMAKENARINQIDNVTF---------EV 361 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV--GMVQAYPHILYISCNPDSLCR 330 E+ D + I VDPPR GLD A + + ++Y+SCNP +L R Sbjct: 362 GAAEKVMPTWVDSGLQP---DVIVVDPPRKGLDGAFIDAAVKTKARKLVYVSCNPATLAR 418 Query: 331 DLSILSTTHTIERLA-LFDQFPYTRHMECGVLLVR 364 DL++ A D FP T +E +L R Sbjct: 419 DLALFQEKGYQALYAQPVDMFPMTTAIETVAVLER 453 >gi|300811827|ref|ZP_07092297.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300497197|gb|EFK32249.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 460 Score = 69.3 bits (168), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 42/148 (28%), Positives = 72/148 (48%), Gaps = 14/148 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L++ Y G G ++ A +V+ +E +V A++N+ NHV N + ++ S Sbjct: 317 LIDAYSGVGTLGILAADQVKQVVGIESIPEAVLDAQHNVEINHVRNAEYLQGSV------ 370 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCR 330 E+ RLK+ + VDPPR+GL + + +++ P +YISCNP +L + Sbjct: 371 ---EKLLPRLKE---DGLPIDALIVDPPRTGLAKSLIKTLLRVKPASFVYISCNPSTLAQ 424 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMEC 358 DL +L + + + D P T EC Sbjct: 425 DLVLLGEAYDVRVIENVDMLPQTPRCEC 452 >gi|238757958|ref|ZP_04619140.1| 23S rRNA (uracil-5-)-methyltransferase rumB [Yersinia aldovae ATCC 35236] gi|238703943|gb|EEP96478.1| 23S rRNA (uracil-5-)-methyltransferase rumB [Yersinia aldovae ATCC 35236] Length = 374 Score = 69.3 bits (168), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 46/157 (29%), Positives = 72/157 (45%), Gaps = 22/157 (14%) Query: 211 GDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270 + +L+CG G F L A ++ +EI+ ++ AR + + NV + S F Sbjct: 235 SSMWDLFCGVGGFGLHCATAQTQLTGIEISAQAIACARQSAVQLGLQNVSFAALDSTRFA 294 Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG----LDDATVGMVQAYPHILYISCNPD 326 + + + + V+PPR G L D M Y ILY SCN + Sbjct: 295 TSTAQVPQL---------------VLVNPPRRGIGTELCDYLSNMAPEY--ILYSSCNAE 337 Query: 327 SLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363 ++ +D+S+L + IER+ LFD FP+T H E LL Sbjct: 338 TMAKDISLL-VDYRIERVQLFDMFPHTAHYEVLSLLT 373 >gi|257063252|ref|YP_003142924.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Slackia heliotrinireducens DSM 20476] gi|256790905|gb|ACV21575.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Slackia heliotrinireducens DSM 20476] Length = 401 Score = 69.3 bits (168), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 48/161 (29%), Positives = 76/161 (47%), Gaps = 21/161 (13%) Query: 213 LLELYCGNGNFSLVLARHFD------RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266 +++ YCG G LV R + +++ VE +V AR N N ++N + V + Sbjct: 250 VMDAYCGTGTIGLVAVRGINGEPGAAKLIGVEERADAVADARNNARHNGIDNAEFVAADA 309 Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG-LDDATVGMVQAYPH-ILYISCN 324 + MR + E R D+ +F+DPPR+G D P I+YISCN Sbjct: 310 GAY---MREQAEQGRSVDV---------LFMDPPRAGSTPDFLKAACSISPKRIVYISCN 357 Query: 325 PDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 P + RD ++ + I+ L D FP+T H+EC + + R Sbjct: 358 PTTQARDAKYLIEHGYRIDVLQPVDMFPHTDHVECVISMSR 398 >gi|313123270|ref|YP_004033529.1| tRNA (uracil-5-)-methyltransferase related enzyme [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312279833|gb|ADQ60552.1| tRNA (Uracil-5-)-methyltransferase related enzyme [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 460 Score = 69.3 bits (168), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 42/148 (28%), Positives = 72/148 (48%), Gaps = 14/148 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L++ Y G G ++ A +V+ +E +V A++N+ NHV N + ++ S Sbjct: 317 LIDAYSGVGTLGILAADQVKQVVGIESIPEAVLDAQHNVEINHVRNAEYLQGSV------ 370 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCR 330 E+ RLK+ + VDPPR+GL + + +++ P +YISCNP +L + Sbjct: 371 ---EKLLPRLKE---DGLPIDALIVDPPRTGLAKSLIKTLLRVKPASFVYISCNPSTLAQ 424 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMEC 358 DL +L + + + D P T EC Sbjct: 425 DLVLLGEAYDVRVIENVDMLPQTPRCEC 452 >gi|295105028|emb|CBL02572.1| 23S rRNA m(5)U-1939 methyltransferase [Faecalibacterium prausnitzii SL3/3] Length = 457 Score = 69.3 bits (168), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 46/148 (31%), Positives = 69/148 (46%), Gaps = 12/148 (8%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 LL+LYCG G L +A ++ VEI ++E+A+ N A R + QA Sbjct: 310 LLDLYCGMGTIGLSMAGQCRELIGVEIVPEAIESAKANAARMGEAVAAKSRFFCADAGQA 369 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCR 330 + DI + +DPPR G D+AT+ V A ++Y+SCNP + R Sbjct: 370 ATQLAAEGLHPDI---------VMLDPPRKGCDEATLSAVVRMAPRRVVYVSCNPATAAR 420 Query: 331 DLSILS-TTHTIERLALFDQFPYTRHME 357 D + L + E++ D FP T+H E Sbjct: 421 DAAWLEQNGYHAEKVQPVDLFPRTKHCE 448 >gi|256070796|ref|XP_002571728.1| rna m5u methyltransferase [Schistosoma mansoni] gi|238656875|emb|CAZ27958.1| rna m5u methyltransferase, putative [Schistosoma mansoni] Length = 607 Score = 69.3 bits (168), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 50/168 (29%), Positives = 81/168 (48%), Gaps = 22/168 (13%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 LL++ CG G +L L++HFDRV+ +++ ++E A+ N N + NV+ A Sbjct: 449 LLDVCCGTGTIALCLSKHFDRVIGIDMCNSAIEDAKSNAKLNDIQNVEFF---------A 499 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH---ILYISCNPD--- 326 + E D + Y ++ VDPPR+GL + + +++ I+YISCN + Sbjct: 500 GKAENMLRNTID-SLPEYCDLSVIVDPPRAGLHHSVIQLLRNCKQIQRIIYISCNIEYAI 558 Query: 327 ----SLCRDLS-ILSTTHTIERLA-LFDQFPYTRHMECGVLLVRKPSG 368 + R S + + +A D FP TRH E +LL R PS Sbjct: 559 ENFLNFARPCSKKFTGIPFVPTMAEAVDLFPQTRHTEVILLLERIPSN 606 >gi|322517118|ref|ZP_08070002.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus vestibularis ATCC 49124] gi|322124268|gb|EFX95779.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus vestibularis ATCC 49124] Length = 452 Score = 69.3 bits (168), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 47/155 (30%), Positives = 74/155 (47%), Gaps = 15/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ Y G G L A+ V VE+ + +VE A+ N N + N V S++ A Sbjct: 308 VIDAYSGIGTIGLSFAKQVKEVYGVEVIETAVEDAKKNAECNGITNAHYVADSAE---NA 364 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330 M + + D+ I VDPPR GL ++ + V P I Y+SCNP ++ R Sbjct: 365 MAKWSKDGIKPDV---------IIVDPPRKGLTESFIKASVAMQPEKITYVSCNPATMAR 415 Query: 331 DLS-ILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D+ + ++++ D FP T H+E LLVR Sbjct: 416 DIKRYQELGYELKKVQPVDLFPQTHHVEVVSLLVR 450 >gi|45656969|ref|YP_001055.1| RNA methyltransferase [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|51316690|sp|Q72TD6|Y1085_LEPIC RecName: Full=Uncharacterized RNA methyltransferase LIC_11085 gi|45600206|gb|AAS69692.1| RNA methyltransferase [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 454 Score = 69.3 bits (168), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 50/195 (25%), Positives = 92/195 (47%), Gaps = 11/195 (5%) Query: 173 VAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD 232 V G+ +R +SF QPN +L+++ L++L+CG+G FS + A F Sbjct: 265 VCGKE--FRVPFDSFFQPNPEGFQPILDFIEKEIPDSFDHLVDLFCGSGFFSRIFAHKFL 322 Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292 ++ ++ + S+E AR ++ + ++ S + + ++LK + S Sbjct: 323 KITGIDSIESSLEIARKQMSLD------FPKIDSSYLKVDLFSKHSSSKLK-VLFSSSDK 375 Query: 293 KTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQF 350 + DPPR+GL + + ++ + Y+SCNP S DL L I+++ + D + Sbjct: 376 DVLIADPPRAGLGEFVLDALKDSKVSYFFYVSCNPTSQKSDLWKLKDFFQIQKILITDPY 435 Query: 351 PYTRHMECGVLLVRK 365 P T H+E L RK Sbjct: 436 PQTPHLESVAFLKRK 450 >gi|325684545|gb|EGD26708.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 460 Score = 69.3 bits (168), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 42/148 (28%), Positives = 72/148 (48%), Gaps = 14/148 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L++ Y G G ++ A +V+ +E +V A++N+ NHV N + ++ S Sbjct: 317 LIDAYSGVGTLGILAADQVKQVVGIESIPEAVLDAQHNVELNHVRNAEYLQGSV------ 370 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCR 330 E+ RLK+ + VDPPR+GL + + +++ P +YISCNP +L + Sbjct: 371 ---EKLLPRLKE---DGLPIDALIVDPPRTGLAKSLIKTLLRVKPASFVYISCNPSTLAQ 424 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMEC 358 DL +L + + + D P T EC Sbjct: 425 DLVLLGEAYDVRVIENVDMLPQTPRCEC 452 >gi|322412063|gb|EFY02971.1| Putative RNA methyltransferase [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 452 Score = 69.3 bits (168), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 50/184 (27%), Positives = 84/184 (45%), Gaps = 16/184 (8%) Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 SF Q N + + + +A + D+ ++ Y G G L A+ V VE+ + +V Sbjct: 280 SFYQVNTVMAEKLYQTAIAFSDLSDDDIVIDAYSGIGTIGLSFAKTVKAVYGVEVIETAV 339 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 + A+ N A N + NV V +++ +E + I VDPPR GL Sbjct: 340 KDAQQNAARNGITNVHFVADTAENAMATWAKE------------GIKPSVILVDPPRKGL 387 Query: 305 DDATV-GMVQAYPH-ILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVL 361 ++ + V P I Y+SCNP ++ RD+ + + ++ D FP T H+EC L Sbjct: 388 TESFIQASVAMGPQKITYVSCNPATMARDIKRYQDLGYKLTKVQPVDLFPQTHHVECVSL 447 Query: 362 LVRK 365 L ++ Sbjct: 448 LEKR 451 >gi|160876725|ref|YP_001556041.1| 23S rRNA methyluridine methyltransferase [Shewanella baltica OS195] gi|217974580|ref|YP_002359331.1| 23S rRNA methyluridine methyltransferase [Shewanella baltica OS223] gi|189045737|sp|A9L1I5|RUMB_SHEB9 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName: Full=23S rRNA(M-5-U747)-methyltransferase gi|254766929|sp|B8E5Q5|RUMB_SHEB2 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName: Full=23S rRNA(M-5-U747)-methyltransferase gi|160862247|gb|ABX50781.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Shewanella baltica OS195] gi|217499715|gb|ACK47908.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Shewanella baltica OS223] gi|315268925|gb|ADT95778.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Shewanella baltica OS678] Length = 390 Score = 69.3 bits (168), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 50/186 (26%), Positives = 83/186 (44%), Gaps = 23/186 (12%) Query: 185 NSFTQPNAGINVHML----EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240 SF Q N + + EWV + L +L+CG G F L A + +EI Sbjct: 221 KSFFQTNPQVAAQLYQTAREWVAEFSPR---SLWDLFCGVGGFGLHCASKDITLTGIEIE 277 Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300 ++ A+ + + NV+ + + S +F + + + I V+PP Sbjct: 278 AEAIACAQMSAQMMGLENVQFMALDSTDFAKGKSA-------------ADKPDLIIVNPP 324 Query: 301 RSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMEC 358 R G+ +A + + ILY SCNP +L +DL + H + ++ LFD FP+T H E Sbjct: 325 RRGIGEALCQSLSEFAPKAILYSSCNPKTLAKDLEHIQGYH-LTKVQLFDLFPHTDHFEV 383 Query: 359 GVLLVR 364 +LV+ Sbjct: 384 LAMLVK 389 >gi|19113979|ref|NP_593067.1| tRNA (m5U54) methyltransferase Trm2 (predicted) [Schizosaccharomyces pombe 972h-] gi|1351598|sp|Q09833|YAD7_SCHPO RecName: Full=Uncharacterized RNA methyltransferase C4G8.07c gi|1022352|emb|CAA91208.1| tRNA (m5U54) methyltransferase Trm2 (predicted) [Schizosaccharomyces pombe] Length = 527 Score = 69.3 bits (168), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 48/160 (30%), Positives = 77/160 (48%), Gaps = 22/160 (13%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK-IVRMSSKEFTQ 271 ++ YCG+G FS+ ++ F V+ VEI+ SV A N N+V+N IV + K F+ Sbjct: 379 FVDAYCGSGLFSVACSKGFLSVIGVEISADSVRYAEENAKRNNVSNATFIVGQAEKIFSS 438 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY-PH-ILYISCNPDSLC 329 E + +DPPR G D + + + Y P+ I+YISCN + Sbjct: 439 IETPPNE--------------TAMVIDPPRKGCDQSFLNQLLEYSPYRIVYISCNVHTQA 484 Query: 330 RDLSIL-----STTHTIERLALFDQFPYTRHMECGVLLVR 364 RD+ L ++ I+ + FD FP + H+E + L + Sbjct: 485 RDVGFLLSQEKGRSYKIDEIRGFDLFPQSHHVESILTLTK 524 >gi|237735640|ref|ZP_04566121.1| conserved hypothetical protein [Mollicutes bacterium D7] gi|229381385|gb|EEO31476.1| conserved hypothetical protein [Coprobacillus sp. D7] Length = 383 Score = 69.3 bits (168), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 41/158 (25%), Positives = 75/158 (47%), Gaps = 15/158 (9%) Query: 210 QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269 Q +++ YCG G +++A V VE+ K +V+ A N N + N+K + + F Sbjct: 237 QERIIDAYCGIGTIGMIVANRTKEVTGVELNKDAVKDAINNAKMNKIENIKFINDDASAF 296 Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDS 327 + ++++ + + +DPPRSG + V+ ++YISC+P + Sbjct: 297 MIKLAKQKQ------------KVDCVIMDPPRSGSTQEFMDAVKILNPKQVVYISCDPST 344 Query: 328 LCRDLSILSTT-HTIERLALFDQFPYTRHMECGVLLVR 364 RD+ + + E + D FP+T H+E VLL + Sbjct: 345 QVRDIKYFAKIGYRGEVMYPVDMFPHTSHVETIVLLSK 382 >gi|159483505|ref|XP_001699801.1| tRNA (uracil-5)-methyltransferase [Chlamydomonas reinhardtii] gi|158281743|gb|EDP07497.1| tRNA (uracil-5)-methyltransferase [Chlamydomonas reinhardtii] Length = 206 Score = 69.3 bits (168), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 50/183 (27%), Positives = 85/183 (46%), Gaps = 32/183 (17%) Query: 200 EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259 +W A K + LL++ CG G L+LA +V+ V+ + +VE AR N A N + N Sbjct: 38 DWAAARPKTL---LLDICCGTGTIGLMLASKVAKVVGVDNVESAVEDARVNAALNGIGNA 94 Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHS----YRFKTIFVDPPRSGLDDATVGMVQAY 315 + V +++ Q++ +D+H+ Y DPPR+GL + + + Sbjct: 95 EFVAGKAEDALQSI-----------LDLHAANDAYEDVVAVCDPPRAGLHKSVLRALLDC 143 Query: 316 PHI---LYISCNPDSLCRDLSILSTTHTIER-----------LALFDQFPYTRHMECGVL 361 I +++SCNPD+L ++++L R D FP+T H+E +L Sbjct: 144 AKIRRLVFVSCNPDNLISNVALLCVPPPARRANSPTPFLAPSATALDLFPHTAHVETVML 203 Query: 362 LVR 364 L R Sbjct: 204 LER 206 >gi|308272258|emb|CBX28864.1| Uncharacterized RNA methyltransferase CT0009 [uncultured Desulfobacterium sp.] Length = 470 Score = 69.3 bits (168), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 44/155 (28%), Positives = 70/155 (45%), Gaps = 17/155 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++LY G G + L+ + +EI + SV A+ N N ++N + K Sbjct: 329 VIDLYSGTGTIPIFLSEDASEISGIEICESSVSDAKKNCIINGISNCTFITGDIK----- 383 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCR 330 N ID + I +DPPR G+ V V + I+Y+SCNP +L R Sbjct: 384 -------NSFSKID---KKPDVIIIDPPRVGMHKDVVKQVVDISAERIVYVSCNPATLAR 433 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 DL +L + + + D FP+T H+E L +K Sbjct: 434 DLLVLKDYYDVMEVQPVDMFPHTFHIESVARLEKK 468 >gi|169350959|ref|ZP_02867897.1| hypothetical protein CLOSPI_01736 [Clostridium spiroforme DSM 1552] gi|169292021|gb|EDS74154.1| hypothetical protein CLOSPI_01736 [Clostridium spiroforme DSM 1552] Length = 449 Score = 69.3 bits (168), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 86/366 (23%), Positives = 159/366 (43%), Gaps = 51/366 (13%) Query: 19 DRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMP 78 D L ++ F N + +P +YR + + I G+ L + Q++ E + D Sbjct: 100 DCLERIGNCFVEVNDCLMMEDPWYYRNKVQMPIGVKGNRLVTGFYKQKSNEIIPCDECFI 159 Query: 79 GSLLINALMIEMMATIRLEPLL-RAKLFQIDYLTSQ-------------SDQAIVTLIYH 124 + L N + T R++ L+ + K++ D L+ Q S++ ++ LI + Sbjct: 160 QNKLSNQI------TKRVKELMEKYKIYPYDKLSHQGNIKHILTKHGYHSNEIMLVLISY 213 Query: 125 --------RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGR 176 +L+ + +E ++ ++ + ++I + +K I ++ + L + R Sbjct: 214 LDKINNVDKLVAEITKEFSM-IKTVIQNINHRIDNVILGDKEIILFGDGFIYDNL-LDNR 271 Query: 177 TLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRV 234 Y+ SF Q N I V L + D +L+ YCG G +L LA++ +V Sbjct: 272 ---YKISLKSFYQVNP-IQVEKLYQKAIEFAKLSNDDVVLDAYCGIGTIALSLAKYVKKV 327 Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294 VEI ++ AR N N + NV+ + ++ L + +IH Sbjct: 328 YGVEIVDTAINDARNNAKLNKIENVEFKCDDAGKYMI---------ELVNNNIH---LDV 375 Query: 295 IFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCRDLSILST-THTIERLALFDQFP 351 +FVDPPR G + ++QA P I+YISC+ + RD+ L + ++ D FP Sbjct: 376 VFVDPPRKGCSKEFLDYLIQAKPSKIIYISCDVATQARDIKYLQEFNYQVDMCQPVDMFP 435 Query: 352 YTRHME 357 +T H+E Sbjct: 436 HTTHIE 441 >gi|332071886|gb|EGI82374.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae GA17545] Length = 374 Score = 69.3 bits (168), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 42/153 (27%), Positives = 68/153 (44%), Gaps = 14/153 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L++ YCG G A+ + ++I ++E A+ N +N +++E Sbjct: 224 LIDAYCGVGTIGFAFAKKVKTLRGMDIIPEAIEDAKRNAKRMGFDNTHYEAGTAEEIIPR 283 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330 +E YR + VDPPR+GLDD + + Y ++YISCN +L R Sbjct: 284 WYKE------------GYRADALIVDPPRTGLDDKLLDTILTYVPEKMVYISCNVSTLAR 331 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363 DL L + + + D FP+T E V L+ Sbjct: 332 DLVRLVEVYDLHYIQSVDMFPHTARTEAVVKLI 364 >gi|294791683|ref|ZP_06756831.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Veillonella sp. 6_1_27] gi|294456913|gb|EFG25275.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Veillonella sp. 6_1_27] Length = 496 Score = 69.3 bits (168), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 90/388 (23%), Positives = 156/388 (40%), Gaps = 60/388 (15%) Query: 10 YEQQLAEKVDRLRQMM--LAFQVPNL---QIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 YE QL+ K +++ ++ +A Q P+L + P YR + + + Sbjct: 131 YEGQLSLKTQKVKDVIERIAHQNPDLVKPTLGPKNPWAYRNKMQMPVG------------ 178 Query: 65 QQTKERMRIDYFMPGSLLI-----NALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119 TK +++ ++ GS I + E +I AK F I+ + + ++ Sbjct: 179 -GTKGDIQMGFYAMGSHDIVQGTNCPIQSEGNNSIAQACYQIAKEFDIEPYDEHTGKGVL 237 Query: 120 TLIYHRLLDDAWRECAIRLRDAL-HARKYQIQLIGR------------ANKTKICLDRD- 165 + R+ W + + L H K+ +LI R +T + L Sbjct: 238 RHVIGRIGQSGWMIILVTATEHLPHQEKWVEKLIERVPQVETIVHNVNGKRTNVILGPKN 297 Query: 166 ---YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAAT--KGIQGDLLELYCGN 220 Y +T + L + +SF Q N + + LA KG + +++ YCG Sbjct: 298 SLLYGAGTITDHIKDLRFTLSPHSFFQVNPEQTTVLYDQALAYADLKGTE-IVIDAYCGT 356 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK-IVRMSSKEFTQAMRREREF 279 G SL LA V+ +EI +P++ AR N N +N + IV ++ E + + Sbjct: 357 GTISLFLAHKAKHVIGIEIVEPAIINARENARRNGYDNTEFIVADAAVEMPKLYKA---- 412 Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDA--TVGMVQAYPHILYISCNPDSLCRDLSILS- 336 R I DP R+G + T I+Y+SCNP ++ RD+ IL+ Sbjct: 413 ---------GVRPDVIVFDPIRAGCKEEVLTSAASMEPKRIVYVSCNPATMARDIEILTH 463 Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVR 364 + ++ + D FP T H+E LL R Sbjct: 464 YGYELKEVQPVDMFPMTAHVEAVALLTR 491 >gi|297539105|ref|YP_003674874.1| TrmA family RNA methyltransferase [Methylotenera sp. 301] gi|297258452|gb|ADI30297.1| RNA methyltransferase, TrmA family [Methylotenera sp. 301] Length = 457 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 54/185 (29%), Positives = 84/185 (45%), Gaps = 17/185 (9%) Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLA 236 L Y N FTQ N IN ML + Q + + + +CG GNF+L +A +VL Sbjct: 277 LTYPFKPNEFTQVNPHINRVMLRRAMQLLAPQQNERIADFFCGIGNFTLPIAHSGAQVLG 336 Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296 +E V+ A + A N++ +VK + T++ E F Sbjct: 337 LEGLANLVDRANESAALNNIKHVKFGVADLFKMTESSLAELG------------HFDKWL 384 Query: 297 VDPPRSGLDDATVGMV-QAYPH-ILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPY 352 VDPPR G + + + P I+Y+SCNP +L RD +L +T+ + + FP+ Sbjct: 385 VDPPRDGAFELVKAITPETAPKLIVYVSCNPATLARDAGVLVNEKGYTLAAAGVINMFPH 444 Query: 353 TRHME 357 T H+E Sbjct: 445 TAHVE 449 >gi|270292705|ref|ZP_06198916.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus sp. M143] gi|270278684|gb|EFA24530.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus sp. M143] Length = 455 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 46/159 (28%), Positives = 78/159 (49%), Gaps = 15/159 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ Y G G L +A+H V VE+ +VE ++ N A N++ N V +++ A Sbjct: 308 VIDAYSGIGTIGLSVAKHVKEVYGVEVIPEAVENSKKNAALNNITNAHYVCDTAE---NA 364 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCR 330 M+ N LK+ + I VDPPR GL ++ + I YISCN ++ R Sbjct: 365 MK-----NWLKE----GIQPTVILVDPPRKGLTESFIKASSQTGADRIAYISCNVATMAR 415 Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVRKPSG 368 D+ + + ++++ D FP T H+E VL+ + G Sbjct: 416 DIKLYQELGYELKKVQPVDLFPQTHHVEAVVLMSKANPG 454 >gi|213691821|ref|YP_002322407.1| (Uracil-5)-methyltransferase [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213523282|gb|ACJ52029.1| (Uracil-5)-methyltransferase [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320457915|dbj|BAJ68536.1| putative methyltransferase [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 422 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 57/208 (27%), Positives = 99/208 (47%), Gaps = 25/208 (12%) Query: 169 ERLTVAGRTLIYRQIENSF----TQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNF 223 E++T+ G T Y+ N F Q + H++ V + ++ +LY G+G F Sbjct: 228 EQVTINGTTFDYQVDVNGFWQVHRQAPIALGTHVINLVNGQLQSAADAVIWDLYSGSGLF 287 Query: 224 SLVLARHFD---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 +L LA R+L+VE A+ +V+ A+ N+ A ++N+V R + + Sbjct: 288 TLPLATMTGERTRMLSVEGARVAVKNAQRNLRAMNLNDVDA-------------RAGDVS 334 Query: 281 RLKD-IDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSIL-S 336 R D + H + + +DPPR+G + A ++YI+C+P SL RD +IL Sbjct: 335 RTLDHVPAHLAKPNVVVLDPPRAGARAKVCRQIAAAGASSVVYIACDPTSLARDTAILIG 394 Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVR 364 + ++ + FD +P T H+E L R Sbjct: 395 EGYELKDIRAFDIYPMTHHVETVALFTR 422 >gi|118444301|ref|YP_878485.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium novyi NT] gi|118134757|gb|ABK61801.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium novyi NT] Length = 450 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 59/236 (25%), Positives = 104/236 (44%), Gaps = 31/236 (13%) Query: 137 RLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINV 196 L LH + + +A+ ++ RDY+ E + L ++ SF Q N Sbjct: 238 ELTGILHTINDSLSDVVQADSMEVLFGRDYIMEEVL----GLKFKISPFSFFQ----TNT 289 Query: 197 HMLEWVLAATKGIQGD-----LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251 E + + +G GD + +LYCG G + A + ++V+ +E+ + + +AA N Sbjct: 290 KGAEALYSIVRGFMGDAKSKVVFDLYCGTGTIGQIAAHNAEKVIGIELIEEAAKAANENA 349 Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311 N + N + + + +KDI + I +DPPR G+ + Sbjct: 350 KLNGLTNCEFLAGDVAKV------------IKDIKVKP---DIIILDPPRPGVHPDALKY 394 Query: 312 VQAY--PHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364 V + I+Y+SCNP +L DL L + E++ + D FP+T H+E V L + Sbjct: 395 VTKFNAKDIIYVSCNPKTLVEDLKFLIKEGYKAEKVKVKDMFPHTPHVETVVRLTK 450 >gi|322391561|ref|ZP_08065030.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus peroris ATCC 700780] gi|321145644|gb|EFX41036.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus peroris ATCC 700780] Length = 455 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 44/158 (27%), Positives = 70/158 (44%), Gaps = 15/158 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L++ YCG G A+ + ++I ++E A+ N N +++E Sbjct: 308 LIDAYCGVGTIGFAFAKKVKSLRGMDIIPEAIEDAKENAKRMGYTNTHYEVGTAEEIIPR 367 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCR 330 +E YR + VDPPR+GLDD + + Y ++Y+SCN +L R Sbjct: 368 WYKE------------GYRADALIVDPPRTGLDDKLLDTIVKYAPEKMVYVSCNVSTLAR 415 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLV-RKPS 367 DL L + + + D FP+T E V L RKP+ Sbjct: 416 DLVRLVEVYDLHYIQSVDMFPHTARTEAVVKLTRRKPA 453 >gi|319947529|ref|ZP_08021760.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus australis ATCC 700641] gi|319746308|gb|EFV98570.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus australis ATCC 700641] Length = 450 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 43/155 (27%), Positives = 68/155 (43%), Gaps = 14/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L++ YCG G A V ++I ++E A+YN N +++E Sbjct: 308 LIDAYCGVGTIGFAFADKVKSVRGMDIIPEAIEDAKYNAKQMGFENTHYEAGTAEEIIPR 367 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCR 330 +E YR + VDPPR+GL + + Y ++Y+SCN +L R Sbjct: 368 WYKE------------GYRADAVIVDPPRTGLGVQLIDTLLRYAPQKMVYVSCNVSTLAR 415 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 DL L+ + + + D FP+T E V LV+K Sbjct: 416 DLVDLTKVYDVVYIQSVDMFPHTARTEAVVKLVKK 450 >gi|74316988|ref|YP_314728.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Thiobacillus denitrificans ATCC 25259] gi|91207814|sp|Q3SK67|RUMA_THIDA RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|74056483|gb|AAZ96923.1| 23S rRNA methyltransferase/RumA [Thiobacillus denitrificans ATCC 25259] Length = 432 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 56/195 (28%), Positives = 90/195 (46%), Gaps = 19/195 (9%) Query: 175 GRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDR 233 G + +R E FTQ N+ IN ++ L G+ + +L+CG GNF+L +A Sbjct: 252 GLVMPFRPTE--FTQVNSAINRALVSRALRLLDPRPGERIADLFCGLGNFTLPIAHRGAD 309 Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293 VL +E + V AR N N + + + + E T +F L D Sbjct: 310 VLGIEGSTELVARARENALRNALPHARFEVDNLFEMTP-----EKFAALGPFD------- 357 Query: 294 TIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSIL--STTHTIERLALFDQ 349 + +DPPRSG + + +A I+Y+SC+P +L RD +L + +E + + Sbjct: 358 KLLIDPPRSGAIEVVKSLPEAGAPRRIVYVSCDPATLARDAEVLVHVKGYRLEAAGVANM 417 Query: 350 FPYTRHMECGVLLVR 364 FP+T H+E L R Sbjct: 418 FPHTAHVESIALFER 432 >gi|331265805|ref|YP_004325435.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus oralis Uo5] gi|326682477|emb|CBZ00094.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus oralis Uo5] Length = 453 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 42/155 (27%), Positives = 69/155 (44%), Gaps = 14/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L++ YCG G A + ++I ++E A+ N +N +++E Sbjct: 308 LIDAYCGVGTIGFAFATKVKSLRGMDIIPEAIEDAKRNAKKMGFDNTHYEAGTAEEIIPR 367 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330 +E YR + VDPPR+GLD + + Y ++Y+SCN +L R Sbjct: 368 WYQE------------GYRANALIVDPPRTGLDGKLLDTILTYVPEKMVYVSCNVSTLAR 415 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 DL L + ++ + D FP+T E V LV+K Sbjct: 416 DLVKLVKVYDLQYIQSVDMFPHTARTEAVVKLVKK 450 >gi|315222549|ref|ZP_07864438.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus anginosus F0211] gi|315188235|gb|EFU21961.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus anginosus F0211] Length = 453 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 46/158 (29%), Positives = 75/158 (47%), Gaps = 15/158 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ Y G G L +A+H V VE+ +VE ++ N N ++N V S++ Sbjct: 308 VVDAYSGIGTIGLSVAKHVKEVYGVEVIPQAVENSKKNAELNSISNAHYVCDSAE----- 362 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCR 330 N +K + I VDPPR GL ++ + V P I+YISCN ++ R Sbjct: 363 -------NAIKKWLNQGIKPSVIMVDPPRKGLTESFIKSSVSMNPKKIIYISCNVATMAR 415 Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVRKPS 367 D+ + + + ++ D FP T H+EC L+ R S Sbjct: 416 DIKLYQELGYKLTKVQPVDLFPMTHHVECIALIQRVKS 453 >gi|167757279|ref|ZP_02429406.1| hypothetical protein CLORAM_02829 [Clostridium ramosum DSM 1402] gi|167703454|gb|EDS18033.1| hypothetical protein CLORAM_02829 [Clostridium ramosum DSM 1402] Length = 378 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 41/158 (25%), Positives = 75/158 (47%), Gaps = 15/158 (9%) Query: 210 QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269 Q +++ YCG G +++A V VE+ K +V+ A N N + N+K + + F Sbjct: 232 QERIIDAYCGIGTIGMIVANRTKEVTGVELNKDAVKDAINNAKMNKIENIKFINDDASAF 291 Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDS 327 + ++++ + + +DPPRSG + V+ ++YISC+P + Sbjct: 292 MIKLAKQKQ------------KVDCVIMDPPRSGSTQEFMDAVKILNPKQVVYISCDPST 339 Query: 328 LCRDLSILSTT-HTIERLALFDQFPYTRHMECGVLLVR 364 RD+ + + E + D FP+T H+E VLL + Sbjct: 340 QVRDIKYFAKIGYRGEVMYPVDMFPHTSHVETIVLLSK 377 >gi|325125323|gb|ADY84653.1| RNA methyltransferase family [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 460 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 42/148 (28%), Positives = 72/148 (48%), Gaps = 14/148 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L++ Y G G ++ A +V+ +E +V A++N+ NHV N + ++ S Sbjct: 317 LIDAYSGVGTLGILAADQVKQVVGIESIPEAVLDAQHNVELNHVRNAEYLQGSV------ 370 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCR 330 E+ RLK+ + VDPPR+GL + + +++ P +YISCNP +L + Sbjct: 371 ---EKLLPRLKE---DGLPIDALIVDPPRTGLAKSLIKTLLRVKPASFVYISCNPSTLAQ 424 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMEC 358 DL +L + + + D P T EC Sbjct: 425 DLVLLGEAYDVRVIENVDMLPQTPRCEC 452 >gi|269839722|ref|YP_003324414.1| RNA methyltransferase, TrmA family [Thermobaculum terrenum ATCC BAA-798] gi|269791452|gb|ACZ43592.1| RNA methyltransferase, TrmA family [Thermobaculum terrenum ATCC BAA-798] Length = 397 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 55/189 (29%), Positives = 91/189 (48%), Gaps = 23/189 (12%) Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAV 237 +R ++SF Q N M + V+ + ++G+ +++ Y G G F+++LA RV+A+ Sbjct: 225 FRISDSSFFQTNTLQAERMAQLVIERCQ-LRGEEVVVDAYAGVGTFAVLLAPRARRVIAI 283 Query: 238 EIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFV 297 E + +V A NI V N++ VR ++E M + E + + Sbjct: 284 EESAAAVADAMVNIEG--VPNIEYVRGKTEEVLGEMAEQPE---------------VLIL 326 Query: 298 DPPRSGL-DDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTR 354 DPPR G A +V P ++Y+SC+P SL RDL + + + + D FP T Sbjct: 327 DPPRVGCHPKALQAVVSLAPARVVYVSCDPGSLARDLRKLCDGGYQLVEVTPVDMFPQTH 386 Query: 355 HMECGVLLV 363 H+EC LV Sbjct: 387 HIECVATLV 395 >gi|325696391|gb|EGD38282.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis SK160] Length = 456 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 43/157 (27%), Positives = 69/157 (43%), Gaps = 14/157 (8%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L++ YCG G A+ + ++I ++E A+ N +N +++E Sbjct: 308 LIDAYCGVGTIGFAFAKRVKSLRGMDIIPEAIEDAKRNAKKMGFDNTLYEAGTAEEIIPR 367 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCR 330 E YR + VDPPR+GLDD + + Y ++Y+SCN +L R Sbjct: 368 WYAE------------GYRADALIVDPPRTGLDDKLLETIVRYAPEKMVYVSCNVSTLAR 415 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRKPS 367 DL L + + + D FP+T E V L +K S Sbjct: 416 DLVKLCQVYDVHYIQSVDMFPHTARTEAVVKLSKKDS 452 >gi|312139448|ref|YP_004006784.1| (uracil-5-)-methyltransferase [Rhodococcus equi 103S] gi|311888787|emb|CBH48099.1| putative (uracil-5-)-methyltransferase [Rhodococcus equi 103S] Length = 422 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 60/196 (30%), Positives = 90/196 (45%), Gaps = 41/196 (20%) Query: 175 GRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD-- 232 G Y ++ +TQP+AG NV W +LY G G F+ LA Sbjct: 262 GAAETYAEVVGEWTQPSAGDNV----W-------------DLYGGVGVFAATLADQVGVT 304 Query: 233 -RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291 RV +VE +K +V +A ++ VR+ A R ER + L D+ Sbjct: 305 GRVDSVEFSKQAVADGGEALA-----DLPQVRL------HAARVERALHDLPTPDV---- 349 Query: 292 FKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCRDLSIL-STTHTIERLALFD 348 + +DPPR+G V +V A P I++I C+P S RD+S+ + + +E++ FD Sbjct: 350 ---VVLDPPRTGAGREVVDTIVAAAPQRIVHIGCDPASFARDVSLFRAGGYRLEQVRAFD 406 Query: 349 QFPYTRHMECGVLLVR 364 FP T H+E LL R Sbjct: 407 AFPLTHHVESLALLTR 422 >gi|291165734|gb|EFE27782.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Filifactor alocis ATCC 35896] Length = 547 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 44/157 (28%), Positives = 78/157 (49%), Gaps = 22/157 (14%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS-SKEFTQ 271 + +LY G G ++++ +V+A+E+ + +VE A+ N N V NV+ + +KE + Sbjct: 315 IFDLYSGTGTIGILVSTIAKKVIAIELIEEAVEMAKENAKMNGVENVEFIAGDVAKEVGK 374 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLC 329 R E+ + I +DPPRSG+ +G V + +I+Y+SCNP Sbjct: 375 --REEKPY--------------LIILDPPRSGMHPKAIGDVLNFEAENIIYVSCNPKIFA 418 Query: 330 RDLSILSTT--HTIERLALFDQFPYTRHMECGVLLVR 364 +L + ++++ + DQFP T H E LL + Sbjct: 419 EELHLFKEKGYQVMDKVGV-DQFPNTNHCETVALLSK 454 >gi|238751797|ref|ZP_04613284.1| 23S rRNA (uracil-5-)-methyltransferase rumB [Yersinia rohdei ATCC 43380] gi|238709926|gb|EEQ02157.1| 23S rRNA (uracil-5-)-methyltransferase rumB [Yersinia rohdei ATCC 43380] Length = 375 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 45/155 (29%), Positives = 77/155 (49%), Gaps = 18/155 (11%) Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271 + +L+CG G F L A ++ +EI+ ++ A+ + + NV + S F Sbjct: 236 SMWDLFCGVGGFGLHCADTQTQLTGIEISAEAIMCAQQSAKKLGLKNVTFAALDSTHFAT 295 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLC 329 A E + +L + V+PPR G+ + Q P ILY SCN +++ Sbjct: 296 A---ETQVPQL------------VLVNPPRRGIGAQLCEYLSQMAPEFILYSSCNAETMA 340 Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 +D+++L+ + IER+ LFD FP+T H E LL++ Sbjct: 341 KDINLLAE-YRIERVQLFDMFPHTSHYEVLTLLIK 374 >gi|116513673|ref|YP_812579.1| tRNA (uracil-5-)-methyltransferase related enzyme [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|116092988|gb|ABJ58141.1| 23S rRNA m(5)U-1939 methyltransferase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 460 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 42/148 (28%), Positives = 72/148 (48%), Gaps = 14/148 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L++ Y G G ++ A +V+ +E +V A++N+ NHV N + ++ S Sbjct: 317 LIDAYSGVGTLGILAADQVKQVVGIESIPEAVLDAQHNVELNHVRNAEYLQGSV------ 370 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCR 330 E+ RLK+ + VDPPR+GL + + +++ P +YISCNP +L + Sbjct: 371 ---EKLLPRLKE---DGLPIDALIVDPPRTGLAKSLIKTLLRVKPASFVYISCNPSTLAQ 424 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMEC 358 DL +L + + + D P T EC Sbjct: 425 DLVLLGEAYDVRVIENVDMLPQTPRCEC 452 >gi|170106666|ref|XP_001884544.1| predicted protein [Laccaria bicolor S238N-H82] gi|164640455|gb|EDR04720.1| predicted protein [Laccaria bicolor S238N-H82] Length = 456 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 48/163 (29%), Positives = 80/163 (49%), Gaps = 21/163 (12%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L++ YCG+G F++VL+ HFD+V +E++ S+ A N N++ KI +A Sbjct: 303 LVDTYCGSGLFAIVLSPHFDKVAGIELSADSIRYATRNAKLNNIPEEKIS-------FRA 355 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCR 330 F + D + +DPPR G D+ + + ++ I+Y+SCN + R Sbjct: 356 GNAGEIFATVGDFPADE---SVVLIDPPRKGCDEFFIQQLLSFAPRTIVYVSCNVHTQAR 412 Query: 331 DL-SILSTT--------HTIERLALFDQFPYTRHMECGVLLVR 364 D+ +IL T + +E + FD FP T H+E +L R Sbjct: 413 DVGNILRATEGNEVGKKYVLESVRGFDLFPQTAHVESVAVLRR 455 >gi|295426510|ref|ZP_06819160.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus amylolyticus DSM 11664] gi|295063878|gb|EFG54836.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus amylolyticus DSM 11664] Length = 450 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 45/155 (29%), Positives = 69/155 (44%), Gaps = 15/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ Y G G L +A+H V +E + +VE A N N + N + V +++ Sbjct: 305 VVDAYSGIGTIGLSVAKHVKAVRGMETIREAVEDANANAKLNGIENAQYVTGKAEDVMPR 364 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330 E + IFVDPPR GL + A I+YISCNP + R Sbjct: 365 WASE------------GLKTDVIFVDPPRKGLTPEFINAAAATKPKRIVYISCNPATQIR 412 Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364 DL +L + + ++ D FP T H+E +L R Sbjct: 413 DLQLLQEKGYHFDEISPVDMFPQTPHVESVTVLER 447 >gi|295697348|ref|YP_003590586.1| RNA methyltransferase, TrmA family [Bacillus tusciae DSM 2912] gi|295412950|gb|ADG07442.1| RNA methyltransferase, TrmA family [Bacillus tusciae DSM 2912] Length = 528 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 51/183 (27%), Positives = 84/183 (45%), Gaps = 19/183 (10%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 SF Q N+ M + A G+ G +++ YCG G SL L+R V +E+A+ Sbjct: 357 TSFYQVNSQQAERMYRLAVEAA-GLDGSQRVVDAYCGVGTLSLFLSRSAAWVTGIEVARE 415 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302 +V AR N N + N + + +E + +R+ + + +DPPR Sbjct: 416 AVADARRNARMNRIGNARFQVGAVEEILPRLVADRQPD-------------VVTLDPPRR 462 Query: 303 GLDDATVG--MVQAYPHILYISCNPDSLCRDLSILS-TTHTIERLALFDQFPYTRHMECG 359 G + + P ++Y+SC+P +L RDL IL+ + + + D FP T H+E Sbjct: 463 GCRREVLEALICSQVPRVVYVSCDPATLARDLRILAGGGYQVRGVWPVDMFPQTGHVESV 522 Query: 360 VLL 362 LL Sbjct: 523 ALL 525 >gi|291542511|emb|CBL15621.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Ruminococcus bromii L2-63] Length = 454 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 42/155 (27%), Positives = 71/155 (45%), Gaps = 15/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 LL+LYCG G L +A +++ EI + +V+ A N AN + N + + A Sbjct: 311 LLDLYCGTGTIGLTMADSCKQLIGAEIVEDAVKDANENAKANGIENARFI--CGDASAAA 368 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330 + E+E + + +DPPR G + V + ++Y+SC+P +L R Sbjct: 369 FQLEKE----------GLKPDCVILDPPRKGCGEELVKTISRMLPSRVVYVSCDPATLAR 418 Query: 331 DLSILS-TTHTIERLALFDQFPYTRHMECGVLLVR 364 DL + +T + + D F T H+E L+ R Sbjct: 419 DLKFFTENGYTPKEITPCDMFSGTSHVESVALIER 453 >gi|90961349|ref|YP_535265.1| tRNA (Uracil-5-) -methyltransferase [Lactobacillus salivarius UCC118] gi|90820543|gb|ABD99182.1| tRNA (Uracil-5-) -methyltransferase [Lactobacillus salivarius UCC118] Length = 459 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 45/155 (29%), Positives = 73/155 (47%), Gaps = 14/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L++ YCG G L ++ V ++I ++E A+ N + N+ + Sbjct: 317 LVDAYCGVGTIGLFVSPDAKEVRGMDIIPEAIEDAKKNAELSGRKNI---------HYEV 367 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY-PH-ILYISCNPDSLCR 330 + E F + D + + VDPPR+GLDD + + Y P+ +Y+SCNP +L R Sbjct: 368 GKAEDLFAKWTKND---FVPDALVVDPPRTGLDDKMIETILKYRPNKFVYVSCNPSTLAR 424 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 DL L + +E + D FP T +E V L +K Sbjct: 425 DLVKLVKIYNVEYIQSVDMFPQTARVEAVVKLSKK 459 >gi|319938868|ref|ZP_08013232.1| 23S rRNA (Uracil-5-)-methyltransferase RumA [Streptococcus anginosus 1_2_62CV] gi|319811918|gb|EFW08184.1| 23S rRNA (Uracil-5-)-methyltransferase RumA [Streptococcus anginosus 1_2_62CV] Length = 453 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 48/166 (28%), Positives = 78/166 (46%), Gaps = 15/166 (9%) Query: 205 ATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRM 264 A I+ +++ Y G G L +A+H V VE+ +VE ++ N N ++N V Sbjct: 300 AELSIEDIVVDAYSGIGTIGLSVAKHVKEVYGVEVIPQAVENSKKNAELNGISNAHYVCD 359 Query: 265 SSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYIS 322 S++ N +K + I VDPPR GL ++ + V P I+YIS Sbjct: 360 SAE------------NAIKKWLNQGIKPSVIMVDPPRKGLTESFIKSSVSMNPKKIVYIS 407 Query: 323 CNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVRKPS 367 CN ++ RD+ + + + ++ D FP T H+EC L+ R S Sbjct: 408 CNVATMARDIKLYQELGYKLTKVQPVDLFPMTHHVECIALIQRVKS 453 >gi|42528119|ref|NP_973217.1| RNA methyltransferase [Treponema denticola ATCC 35405] gi|51316951|sp|Q73JF6|Y2619_TREDE RecName: Full=Uncharacterized RNA methyltransferase TDE_2619 gi|41819164|gb|AAS13136.1| RNA methyltransferase, TrmA family, putative [Treponema denticola ATCC 35405] Length = 404 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 51/206 (24%), Positives = 90/206 (43%), Gaps = 6/206 (2%) Query: 155 ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL 214 ++ KI + D + +AG+ + + + F Q N + ++ + + I +L Sbjct: 194 SDGEKIFTQDNAKDCEVRLAGKRIKFNPL--GFFQSNLEMTEKLINTIFEYAE-ISSSVL 250 Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274 + Y G G FSL + VE K ++ A+ N N ++ + F + Sbjct: 251 DFYSGVGTFSLFAYDQAKEIHLVEHNKHALAYAQENFLINSSSSGIVREKKENGFPKIFY 310 Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDL 332 + +F T+FVDPPR G+D + + I YISC+P + RD Sbjct: 311 HALDGKNWAKTKESKLKFDTVFVDPPRIGIDKEALSWLCSSGTRQIFYISCDPVTFARDT 370 Query: 333 -SILSTTHTIERLALFDQFPYTRHME 357 S+L + + +E+ LFD +P T H+E Sbjct: 371 ASLLVSGYKLEKHFLFDFYPQTHHIE 396 >gi|293363614|ref|ZP_06610370.1| TRAM domain protein [Mycoplasma alligatoris A21JP2] gi|292552963|gb|EFF41717.1| TRAM domain protein [Mycoplasma alligatoris A21JP2] Length = 464 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 45/157 (28%), Positives = 76/157 (48%), Gaps = 16/157 (10%) Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271 ++LELYCG G+ + ++ +EI K ++E AR N N NN T Sbjct: 319 NVLELYCGVGSLGISTGLEKLNIIGIEIVKQAIENARENAKLNEFNNA----------TY 368 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLC 329 + + K+I +++ K + +DPPRSGLD + + I+Y+SC+ +L Sbjct: 369 YCGDVYKVIKEKNITLNN---KVVLLDPPRSGLDKELIDFLVNNNADKIIYVSCDLGTLI 425 Query: 330 RDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRK 365 RD++I S + I + +D F T H+E + +K Sbjct: 426 RDITIFDSFGYDINFVKGYDVFKNTSHIETLSFITKK 462 >gi|254517049|ref|ZP_05129107.1| 23S rRNA (uracil-5-)-methyltransferase RumA [gamma proteobacterium NOR5-3] gi|219674554|gb|EED30922.1| 23S rRNA (uracil-5-)-methyltransferase RumA [gamma proteobacterium NOR5-3] Length = 402 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 56/185 (30%), Positives = 90/185 (48%), Gaps = 22/185 (11%) Query: 187 FTQPNAGINVHMLEWVLAATKGI--QGDLLELYCGNGNFSLVL-ARHFDRVLAVEIAKPS 243 F Q N+ N M EWV A I +LEL+ G+GNF+ VL ++ + AV+ P+ Sbjct: 231 FRQGNSAQNQRMREWVRAKVLQIPTSSPVLELFAGSGNFTEVLVGAAYESICAVDSFGPA 290 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 +E ++ A + V + R+ + +++ R K + +DPPR G Sbjct: 291 IE----DLQARSLPGVT-------GLCSNLDRD---DSAAELEAQLSRAKLLLLDPPREG 336 Query: 304 LDDATVGMVQAYPH---ILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHMECG 359 L + + +A PH I+YISCN +LCRDL + + ++ + D FP T H+E Sbjct: 337 LKNIGDYLHRA-PHLNTIIYISCNLATLCRDLQAAMEHKFELQEVQPLDLFPQTPHIEAL 395 Query: 360 VLLVR 364 +L R Sbjct: 396 TVLKR 400 >gi|157149945|ref|YP_001449932.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus gordonii str. Challis substr. CH1] gi|157074739|gb|ABV09422.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus gordonii str. Challis substr. CH1] Length = 454 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 43/157 (27%), Positives = 70/157 (44%), Gaps = 14/157 (8%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L++ YCG G A+ + ++I ++E A+ N +N +++E Sbjct: 306 LIDAYCGVGTIGFAFAKRVKSLRGMDIIPEAIEDAKRNAKRMGFDNTLYEAGTAEEIIPR 365 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCR 330 E YR + VDPPR+GLDD + + Y ++Y+SCN +L R Sbjct: 366 WYAE------------GYRADALIVDPPRTGLDDKLLETIVRYAPEKMVYVSCNVSTLAR 413 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRKPS 367 DL LS + + + D FP+T E V L ++ S Sbjct: 414 DLVKLSRVYDVHYIQSVDMFPHTARTEAVVKLSKRES 450 >gi|282599565|ref|ZP_06257306.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Providencia rustigianii DSM 4541] gi|282568519|gb|EFB74054.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Providencia rustigianii DSM 4541] Length = 331 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 55/186 (29%), Positives = 83/186 (44%), Gaps = 25/186 (13%) Query: 186 SFTQPNAGINVHML----EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241 SF Q N + + EWV T L +L+CG G F L A ++ +EI Sbjct: 165 SFFQTNPIVAAKLYQTAREWVQELTIS---SLWDLFCGVGGFGLHCADQNIKLTGIEICA 221 Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301 P++E AR + + V+ + S F + +DI + V+PPR Sbjct: 222 PAIECARQSAQELGLQKVEFQALDSTNFATSR---------QDIP------DLVLVNPPR 266 Query: 302 SGLDDATVG-MVQAYP-HILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359 G+ + +P +ILY SCN ++ DL LS + + ++ LFD FP+T H E Sbjct: 267 RGIGKNLCNYLSDMHPEYILYSSCNAQTMAEDLQQLS-GYQVCKVQLFDMFPHTAHYEVL 325 Query: 360 VLLVRK 365 LL RK Sbjct: 326 CLLKRK 331 >gi|117928603|ref|YP_873154.1| RNA methyltransferase [Acidothermus cellulolyticus 11B] gi|117649066|gb|ABK53168.1| 23S rRNA m(5)U-1939 methyltransferase [Acidothermus cellulolyticus 11B] Length = 397 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 59/206 (28%), Positives = 92/206 (44%), Gaps = 21/206 (10%) Query: 168 DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLV 226 D RL R +R +F Q + ++ +++ G+ +L+LY G G F+ Sbjct: 206 DRRLIEVVRGRRFRLRPTTFWQVHPAAADLLIGAIVSGVTPAPGERVLDLYAGAGLFAAF 265 Query: 227 LARHFD---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 LA RV+AVE + + A N+A + V++ R EF A E Sbjct: 266 LAESVGSSGRVVAVEGDRGAAADASVNLA--EFDTVEVRRADVAEFLAAAADRGE----- 318 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY-PH-ILYISCNPDSLCRDLSILS-TTHT 340 RF + DPPR+GL + A P I Y++C+P +L RDL++ S + Sbjct: 319 -------RFDIVVADPPRTGLGPPNARRICALRPRAIGYVACDPAALARDLAVFSEAGYQ 371 Query: 341 IERLALFDQFPYTRHMECGVLLVRKP 366 + FD FP T H+EC +L +P Sbjct: 372 AVSVRAFDIFPQTHHVECVAILRPEP 397 >gi|256544922|ref|ZP_05472293.1| TrmA family tRNA methyltransferase [Anaerococcus vaginalis ATCC 51170] gi|256399421|gb|EEU13027.1| TrmA family tRNA methyltransferase [Anaerococcus vaginalis ATCC 51170] Length = 415 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 80/392 (20%), Positives = 156/392 (39%), Gaps = 81/392 (20%) Query: 2 SGTLLID-QYEQQLAEKVDRLRQMMLA---FQVPNLQIFRSEPIHYRMRAEFHIWHDGDD 57 G ++D Y+ Q+ K + ++ +L ++ +L+I + YR + I +G Sbjct: 75 GGCSIMDINYKSQIKLKKNLIKNALLKSAKIKIDDLEILEGKEFGYRNKIRLQINKNGKL 134 Query: 58 LYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQA 117 Y+ + ++E+ + + L+R L +I+ +T + Sbjct: 135 AYNKKYSND--------------------LVEIKDCLLAKDLIRKNLEKIEEITKDITKK 174 Query: 118 IVTLIYHRLLDDAWREC--AIRLRDA---------LHARKYQIQLIGRANKTKICLDRDY 166 + + +E I+++D Y I LI + Sbjct: 175 YPNSLEEITIRANEKEILLNIKIKDEKIIPYIKNQYKNSTYNINLINKK----------- 223 Query: 167 VDERLTVAGRT-LIYRQIE-------NSFTQPNAGINVHMLEWVLAATKGIQGD---LLE 215 E + ++G+ L+Y + N F Q +N +M E + K G+ +L+ Sbjct: 224 --ETINISGKNYLVYNLLGKKFKITMNDFYQ----VNDYMTEKLYKTAKDFLGENQKVLD 277 Query: 216 LYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275 L+CG+ S+ + + D V+ +EI K +++ A+ N N + + K + ++ Sbjct: 278 LFCGSATSSIAI--NDDHVVGIEINKNAIKDAKANAKENDLKDYKFIAKNA--------- 326 Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHI--LYISCNPDSLCRDLS 333 N + D I + I +DPPR GLD + + +YISCNP +L RD+ Sbjct: 327 ----NYIDDKFIKKEKIDAIVLDPPRRGLDKEIIKTIAKTKIKKIVYISCNPQTLARDIK 382 Query: 334 -ILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 + +E++ D F T H+E L+ R Sbjct: 383 RFQEKGYKLEKIKGCDMFSETMHVEMVALIAR 414 >gi|195978633|ref|YP_002123877.1| RNA methyltransferase TrmA family [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|225868040|ref|YP_002743988.1| RNA methyltransferase [Streptococcus equi subsp. zooepidemicus] gi|195975338|gb|ACG62864.1| RNA methyltransferase TrmA family [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|225701316|emb|CAW98335.1| putative RNA methyltransferase [Streptococcus equi subsp. zooepidemicus] Length = 455 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 89/390 (22%), Positives = 155/390 (39%), Gaps = 62/390 (15%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFR-------SEPIHYRMRAEFHIWHDGDDLYHIM 62 Y +QL K D +RQ + F+ + F +EP HYR + +F G + + Sbjct: 89 YPKQLYFKDDIIRQALKKFKPKGYEDFEIRHTLGMAEPQHYRAKLQFQTRSFGGSVKAGL 148 Query: 63 FDQQTKERMRIDYFMPGSLLINALMIEM----------------MATIRLEPLLRAKL-- 104 F + + + ID + L A++ + +A IR + RA+ Sbjct: 149 FSEGSHRLVAIDDCLVQDQLTQAIVNRVTQLLDRHRIPIYNERRVAGIRTVMVRRAQASD 208 Query: 105 -FQIDYLTSQSDQ-----AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKT 158 Q+ +++S+ + A +T + ++ A A + D A KT Sbjct: 209 QVQLIFVSSKEVRLAGLIAELTAAFPQIRTVALNINASKTSDIYGA------------KT 256 Query: 159 KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAG-INVHMLEWVLAATKGIQGDLLELY 217 +I ++ + E + L R +F Q N V + V A + +++ Y Sbjct: 257 EILWGQETIQEEVLSYSFALSPR----AFYQLNPKQTEVLYSQVVQALDPTAEEHIIDAY 312 Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277 CG G+ L +A V ++I ++ AR N A +N ++E + E Sbjct: 313 CGVGSIGLAVADKVRSVRGMDIIPEAIADARKNAQALGFDNAYYETGKAEELIPSWYAE- 371 Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSIL 335 YR + VDPPR+GLDD + + Y ++Y+SCN +L RDL L Sbjct: 372 -----------GYRADALIVDPPRTGLDDKLLQTILHYQPAKMIYVSCNTSTLARDLVSL 420 Query: 336 STTHTIERLALFDQFPYTRHMECGVLLVRK 365 + + + D FP+T E V L ++ Sbjct: 421 VQVYDVIYIQSVDMFPHTARTEAVVKLQKR 450 >gi|190569470|ref|ZP_03022333.1| RNA methyltransferase, TrmA family [Bacillus anthracis Tsiankovskii-I] gi|190559418|gb|EDV13440.1| RNA methyltransferase, TrmA family [Bacillus anthracis Tsiankovskii-I] Length = 134 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 43/146 (29%), Positives = 70/146 (47%), Gaps = 14/146 (9%) Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281 L LA V +++ ++ AR N + N K ++++ +E Sbjct: 1 TIGLWLANDAAEVRGMDVIPEAIADARKNAKRHGFTNTKYEAGKAEQWLPKWVKE----- 55 Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCRDLSILSTTH 339 +R I VDPPR+G DD + +++ P ++Y+SCNP SL RD+ L ++ Sbjct: 56 -------GWRPDVIVVDPPRTGCDDKLLETILKVKPKQVVYVSCNPSSLARDVQALMKSY 108 Query: 340 TIERLALFDQFPYTRHMECGVLLVRK 365 +E + D FP+T H+E V LVRK Sbjct: 109 EVEYVQPVDMFPHTAHVENVVKLVRK 134 >gi|325690901|gb|EGD32902.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis SK115] Length = 464 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 42/155 (27%), Positives = 72/155 (46%), Gaps = 15/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ Y G G L +A+H V VE+ +VE ++ N N + N V +++ + Sbjct: 321 VIDAYSGIGTIGLSVAKHVKEVYGVEVIPEAVENSQKNATLNGITNAHYVCDTAENAMKT 380 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV--GMVQAYPHILYISCNPDSLCR 330 +E + I VDPPR GL ++ + I YISCN ++ R Sbjct: 381 WLKE------------GIQPTAILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMAR 428 Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364 D+ + + ++++ D FP T H+EC LLV+ Sbjct: 429 DIKLYQELGYELKKVQPVDLFPQTHHVECVALLVK 463 >gi|301301048|ref|ZP_07207208.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus salivarius ACS-116-V-Col5a] gi|300851318|gb|EFK79042.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus salivarius ACS-116-V-Col5a] Length = 459 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 44/155 (28%), Positives = 74/155 (47%), Gaps = 14/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L++ YCG G L ++ V ++I ++E A+ N + N+ + Sbjct: 317 LVDAYCGVGTIGLFVSPDAKEVRGMDIIPEAIEDAKKNAELSGRKNI---------HYEV 367 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY-PH-ILYISCNPDSLCR 330 + E F + +++ + VDPPR+GLDD + + Y P+ +Y+SCNP +L R Sbjct: 368 GKAEDLFAKWTK---NNFVPDALVVDPPRTGLDDKMIETILKYRPNKFVYVSCNPSTLAR 424 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 DL L + +E + D FP T +E V L +K Sbjct: 425 DLVKLVKIYNVEYIQSVDMFPQTARVEAVVKLSKK 459 >gi|271500850|ref|YP_003333875.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Dickeya dadantii Ech586] gi|270344405|gb|ACZ77170.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Dickeya dadantii Ech586] Length = 376 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 55/188 (29%), Positives = 91/188 (48%), Gaps = 27/188 (14%) Query: 185 NSFTQPNAGINVHML----EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVL-AVEI 239 SF Q N + + +WV +T I+ L +L+CG G F L A DRVL +EI Sbjct: 208 QSFFQTNPVVAAALYDTARQWV--STLPIR-SLWDLFCGVGGFGLHCAGP-DRVLTGIEI 263 Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299 + ++ A+++ + NV + S F ++ D+ + V+P Sbjct: 264 SPEAIACAQHSATLLGLENVSFAALDSTRFA--------VGEMQTPDL-------VIVNP 308 Query: 300 PRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHME 357 PR G+ + A P++LY SCN +S+ +D++ L + I+++ LFD FP+T H E Sbjct: 309 PRRGIGAELCDYLSRMAPPYLLYSSCNAESMAKDIARLP-AYQIQQVQLFDMFPHTAHYE 367 Query: 358 CGVLLVRK 365 LL R+ Sbjct: 368 VLTLLQRR 375 >gi|227891765|ref|ZP_04009570.1| tRNA (uracil-5-) -methyltransferase [Lactobacillus salivarius ATCC 11741] gi|227866424|gb|EEJ73845.1| tRNA (uracil-5-) -methyltransferase [Lactobacillus salivarius ATCC 11741] Length = 459 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 44/155 (28%), Positives = 74/155 (47%), Gaps = 14/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L++ YCG G L ++ V ++I ++E A+ N + N+ + Sbjct: 317 LVDAYCGVGTIGLFVSPDAKEVRGMDIIPEAIEDAKKNAELSGRKNI---------HYEV 367 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY-PH-ILYISCNPDSLCR 330 + E F + +++ + VDPPR+GLDD + + Y P+ +Y+SCNP +L R Sbjct: 368 GKAEDLFAKWTK---NNFVPDALVVDPPRTGLDDKMIETILKYRPNKFVYVSCNPSTLAR 424 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 DL L + +E + D FP T +E V L +K Sbjct: 425 DLVKLVKIYNVEYIQSVDMFPQTARVEAVVKLSKK 459 >gi|78044405|ref|YP_359958.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Carboxydothermus hydrogenoformans Z-2901] gi|77996520|gb|ABB15419.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Carboxydothermus hydrogenoformans Z-2901] Length = 441 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 50/153 (32%), Positives = 75/153 (49%), Gaps = 17/153 (11%) Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276 Y G G+ +L AR V+ VE + +VE A+ N N + NV +E Sbjct: 302 YSGVGSLTLPAARIAASVVGVEEIRDAVEVAKTNAKLNGIANVNFFAGKVEE-------- 353 Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCRDLSI 334 +L + YRF I +DPPR G+ + +++ P I+Y+SCNP + RDL I Sbjct: 354 ----KLPWLLKKGYRFNKIILDPPREGVKKEVLEEIIKLNPERIVYVSCNPATQARDLKI 409 Query: 335 LSTT--HTIERLALFDQFPYTRHMECGVLLVRK 365 L+ T + +E + D F T H+E VLL +K Sbjct: 410 LAETGYYPVE-ITPVDMFSQTMHVENVVLLKKK 441 >gi|47459337|ref|YP_016199.1| SAM-dependent methyltransferase [Mycoplasma mobile 163K] gi|51316610|sp|Q6KHE2|Y5020_MYCMO RecName: Full=Uncharacterized RNA methyltransferase MMOB5020 gi|47458667|gb|AAT27988.1| SAM-dependent methyltransferases [Mycoplasma mobile 163K] Length = 363 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 46/182 (25%), Positives = 89/182 (48%), Gaps = 18/182 (9%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSF Q N + +++ ++ + ++L+LY G G SL++A V VE S+ Sbjct: 194 NSFYQVNKEV-ANLIYNQISEFINLNENVLDLYSGIGTISLLIAAKAKSVTGVERNLDSI 252 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 E A +N N + NV + ++ + +++ + + F T+ VDP R GL Sbjct: 253 EDANFNKEFNKIKNVNFIH---QDVIKYLKQNKTY------------FDTVIVDPARRGL 297 Query: 305 DDATVGMV-QAYPH-ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362 ++ + ++ + P I+Y+SCN + + + + IE + +D FP T H+E ++L Sbjct: 298 EEDIIELILKLKPQKIIYLSCNVGTQASNFNKFKHEYQIEFIKSYDMFPQTYHIESLMVL 357 Query: 363 VR 364 + Sbjct: 358 KK 359 >gi|199597997|ref|ZP_03211421.1| tRNA (uracil-5-)-methyltransferase related enzyme [Lactobacillus rhamnosus HN001] gi|199591087|gb|EDY99169.1| tRNA (uracil-5-)-methyltransferase related enzyme [Lactobacillus rhamnosus HN001] Length = 455 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 56/218 (25%), Positives = 93/218 (42%), Gaps = 27/218 (12%) Query: 155 ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATK-----GI 209 ++++ + Y+ E T++GRT ++ +F Q +N E + A K Sbjct: 258 GKESRLLAGQPYIQE--TLSGRT--FQLSPQAFLQ----LNPKQTEQLYAIAKDALQLAP 309 Query: 210 QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269 L++ YCG G + LA + ++ ++ A+ N N NN + Sbjct: 310 DDTLIDAYCGIGTVGMSLANRHQSIYGMDTIPEAIADAKANAKNNGFNNTRYF------- 362 Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDS 327 + E F + IH + VDPPRSGL+ + ++Q P YISCNP + Sbjct: 363 --VGKAETLFPKWLKEGIHP---NAVIVDPPRSGLERPFIDALLQLSPQKFAYISCNPST 417 Query: 328 LCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 L RDL L+ + ++ + D FP T E V R+ Sbjct: 418 LARDLVPLAKHYQVDWIQSIDMFPQTARCEAVVKFTRR 455 >gi|307708648|ref|ZP_07645111.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus mitis NCTC 12261] gi|307615222|gb|EFN94432.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus mitis NCTC 12261] Length = 459 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 47/155 (30%), Positives = 76/155 (49%), Gaps = 15/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ Y G G L +A+H V VE+ +VE ++ N N+++N V +++ A Sbjct: 311 VIDAYSGIGTIGLSVAKHVKEVYGVEVIPEAVENSKKNAQLNNISNAHYVCDTAE---NA 367 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCR 330 M+ N LKD + I VDPPR GL ++ + I YISCN ++ R Sbjct: 368 MK-----NWLKD----GIQPSLILVDPPRKGLTESFIKASSQTGADRIAYISCNVATMAR 418 Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364 D+ + + + ++ D FP T H+E LLVR Sbjct: 419 DIKLYRELGYELNKVQPVDLFPQTHHVEAVSLLVR 453 >gi|306832906|ref|ZP_07466038.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus bovis ATCC 700338] gi|304424805|gb|EFM27939.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus bovis ATCC 700338] Length = 450 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 42/155 (27%), Positives = 67/155 (43%), Gaps = 14/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G A V ++I ++ A+ N N +++ Sbjct: 308 VIDAYCGVGTIGFAFAAKVKSVRGMDIIPEAIADAKKNAQRMGFENTHYEAGRAEDIIPK 367 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330 +E YR + VDPPR+G+DD + + Y ++Y+SCN +L R Sbjct: 368 WYKE------------GYRADALIVDPPRTGIDDKLLDTILKYQPAKMVYVSCNTATLAR 415 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 DL LS + + + D FP+T E V LVRK Sbjct: 416 DLVKLSKVYDVHYIQSVDMFPHTARTEAVVKLVRK 450 >gi|325474668|gb|EGC77854.1| hypothetical protein HMPREF9353_00701 [Treponema denticola F0402] Length = 404 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 51/206 (24%), Positives = 90/206 (43%), Gaps = 6/206 (2%) Query: 155 ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL 214 ++ KI + D + +AG+ + + + F Q N + ++ + + I +L Sbjct: 194 SDGEKIFTQDNAKDCEVRLAGKRIKFNPL--GFFQSNLEMTEKLINTIFEYAE-ISSSVL 250 Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274 + Y G G FSL + VE K ++ A+ N N ++ + F + Sbjct: 251 DFYSGVGTFSLFAYDQAKEIHLVEHNKHALAYAQENFLINSSSSGIVREKKENGFPKIFY 310 Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDL 332 + +F T+FVDPPR G+D + + I YISC+P + RD Sbjct: 311 HALDGKNWAKTKESKLKFDTVFVDPPRIGIDKEALSWLCSSGTRQIFYISCDPVTFARDT 370 Query: 333 -SILSTTHTIERLALFDQFPYTRHME 357 S+L + + +E+ LFD +P T H+E Sbjct: 371 ASLLVSGYKLEKHFLFDFYPQTHHIE 396 >gi|313892294|ref|ZP_07825887.1| conserved domain protein [Dialister microaerophilus UPII 345-E] gi|313119432|gb|EFR42631.1| conserved domain protein [Dialister microaerophilus UPII 345-E] Length = 260 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 42/161 (26%), Positives = 77/161 (47%), Gaps = 15/161 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G SL LA+ V+ +EI K ++E A+ N N + NV+ ++ Sbjct: 25 VIDAYCGTGTISLYLAQKAKHVIGIEIIKDAIENAKENAKRNKIKNVEFHAADVAKY--- 81 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCR 330 L ++ + + + +DP R+G D+ + + + I+Y+SCN + R Sbjct: 82 ---------LPELAKKGIKAEVVVLDPVRAGCDEKVIEAIGKISPKRIVYVSCNVATQAR 132 Query: 331 DLSILSTT-HTIERLALFDQFPYTRHMECGVLLVRKPSGWH 370 D+ LS + + ++ D FP T H+E LL + + H Sbjct: 133 DIERLSKKGYKLIKIQPIDMFPKTTHVETVALLYKLNTEHH 173 >gi|45655997|ref|YP_000083.1| RNA methyltransferase [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|51316692|sp|Q72W54|Y086_LEPIC RecName: Full=Uncharacterized RNA methyltransferase LIC_10086 gi|45599230|gb|AAS68720.1| RNA methyltransferase [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 415 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 52/193 (26%), Positives = 94/193 (48%), Gaps = 16/193 (8%) Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVL 235 + +++ F+Q N + LE + Q +LELYCG+G ++ L L Sbjct: 235 KKIVWEIPAGGFSQVNRYLIAPWLEKIFELVPNNQNRILELYCGSGLIAIALKSKTTSWL 294 Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295 EI+ V+ A+ N+ N + SS +F + + E ++ +++ S+ Sbjct: 295 GYEISSDCVQQAKRNVLLNGI--------SSCDF-KTLNLETDWIDSEEVLNSSF----W 341 Query: 296 FVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCRDLSI-LSTTHTIERLALFDQFPY 352 ++PPR+GL + +++ P+ LY SCN +L RDLS+ L+ + + + L D FP Sbjct: 342 IMNPPRAGLSKKVLQTLIKTSPNGFLYSSCNHSTLVRDLSLFLNKDYKLSNVTLVDFFPR 401 Query: 353 TRHMECGVLLVRK 365 T+H E V + +K Sbjct: 402 TKHFEVIVKVEKK 414 >gi|224826668|ref|ZP_03699769.1| RNA methyltransferase, TrmA family [Lutiella nitroferrum 2002] gi|224601269|gb|EEG07451.1| RNA methyltransferase, TrmA family [Lutiella nitroferrum 2002] Length = 516 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 56/185 (30%), Positives = 86/185 (46%), Gaps = 34/185 (18%) Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 FTQ N IN M+ L G+ + +++CG GNF+L +AR V +E ++ V+ Sbjct: 270 FTQVNPEINNVMVTRALRLLDPQPGERIADMFCGIGNFTLPIARSGADVHGMEGSEALVK 329 Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY----RFKTIFVDPPR 301 A N + N + + + E L D+ S+ +F + VDPPR Sbjct: 330 RAVENASHNRLEH---------------KVSYEMANLFDVTEESFAALGKFDKMLVDPPR 374 Query: 302 SG-------LDDATVGMVQAYPHILYISCNPDSLCRDLSILSTT--HTIERLALFDQFPY 352 G L D T A I+Y+SCNP +L RD IL T +T++ + + FP+ Sbjct: 375 DGAVQLLKALTDDT-----APQRIVYVSCNPATLARDAGILVNTKGYTLKAAGIINMFPH 429 Query: 353 TRHME 357 T H+E Sbjct: 430 TAHVE 434 >gi|238789653|ref|ZP_04633436.1| 23S rRNA (uracil-5-)-methyltransferase rumB [Yersinia frederiksenii ATCC 33641] gi|238722206|gb|EEQ13863.1| 23S rRNA (uracil-5-)-methyltransferase rumB [Yersinia frederiksenii ATCC 33641] Length = 376 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 47/157 (29%), Positives = 75/157 (47%), Gaps = 18/157 (11%) Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271 + +L+CG G F L A ++ +EI+ ++ AR + + NV + S F Sbjct: 236 SMWDLFCGVGGFGLHCADTETQLTGIEISTEAIACARQSADQLGLKNVNFAALDSTRFAT 295 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLC 329 A E + +L + V+PPR G+ + Q P ILY SCN +++ Sbjct: 296 A---EAQVPQL------------VLVNPPRRGIGTELCRYLSQMAPEFILYSSCNAETMA 340 Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRKP 366 +D++ L+ + IER+ LFD FP+T H E LL P Sbjct: 341 KDIAQLAD-YRIERVQLFDMFPHTSHYEVLTLLTLSP 376 >gi|224007687|ref|XP_002292803.1| RNA methyltransferase [Thalassiosira pseudonana CCMP1335] gi|220971665|gb|EED89999.1| RNA methyltransferase [Thalassiosira pseudonana CCMP1335] Length = 154 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 50/155 (32%), Positives = 73/155 (47%), Gaps = 19/155 (12%) Query: 213 LLELYCGNGNFSLVLARH--FDRVLAVEIAKPSVEAARYNIAANHVNNV----KIVRMSS 266 LLE+YCG G ++ LA+ ++AVE+ + A R N N + K ++ S Sbjct: 2 LLEMYCGCGAHTIPLAKSALLSEIVAVELDERLANACRRNCRLNGCDAAEWAKKTLKDQS 61 Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV---QAYPHILYISC 323 K+ T ++ FN H F + VDPPR GLD + + H++YISC Sbjct: 62 KQRTNT--KQPSFN-------HYNNFDILLVDPPREGLDKIVCDLAINKGTFQHVVYISC 112 Query: 324 NPDSLCRDLSILSTTH-TIERLALFDQFPYTRHME 357 +L RDL IL + LA+ D FP T +E Sbjct: 113 GRVALLRDLDILCKGGFNVVNLAVIDLFPGTDAVE 147 >gi|15888078|ref|NP_353759.1| RNA methyltransferase [Agrobacterium tumefaciens str. C58] gi|50401625|sp|Q8UHE7|Y735_AGRT5 RecName: Full=Uncharacterized RNA methyltransferase Atu0735 gi|15155704|gb|AAK86544.1| RNA methyltransferase [Agrobacterium tumefaciens str. C58] Length = 416 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 55/180 (30%), Positives = 90/180 (50%), Gaps = 16/180 (8%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 FTQ M E +LA G + +L+CG+G F+L LAR RV AVE ++ Sbjct: 249 GGFTQATKQAEDAMAELMLAHV-GKSKRIADLFCGSGTFALRLAR-IGRVHAVEAEDKAL 306 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 +A + AA + +K V + ++ RR + LK+ D + DPPR+G Sbjct: 307 KA--LDFAARNTQGLKPVSVEKRDL---FRRPLMTSELKNYD-------AVVFDPPRAGA 354 Query: 305 DDATVGMVQA-YPHILYISCNPDSLCRDLSILS-TTHTIERLALFDQFPYTRHMECGVLL 362 + + ++ I+ +SCNP +L RDL+IL+ + + R+ DQF ++ H+E +L Sbjct: 355 EVQCKELARSTVKKIVAVSCNPLTLARDLAILTEGGYRVTRVTPVDQFLWSPHVEAVAVL 414 >gi|325569856|ref|ZP_08145850.1| 23S rRNA (uracil-5-)-methyltransferase [Enterococcus casseliflavus ATCC 12755] gi|325156979|gb|EGC69147.1| 23S rRNA (uracil-5-)-methyltransferase [Enterococcus casseliflavus ATCC 12755] Length = 458 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 93/388 (23%), Positives = 153/388 (39%), Gaps = 53/388 (13%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFR-------SEPIHYRMRAEFHIWHDGD------ 56 Y++QL K D L+Q + F+ Q F P HYR +A+F + ++ Sbjct: 92 YDKQLDFKKDLLKQALEKFKPKGYQQFELRDTLGMDVPWHYRNKAQFQLRYNSQTKRIEA 151 Query: 57 DLYH------IMFDQQTKERMRIDYFMPGSL-LINALMIEMMATIRLEPLLRAKLFQIDY 109 LY + D + + G + L+N I + + +LR + +I Sbjct: 152 GLYEMESHRLVAIDDCLVQEQDTQKVINGIVQLLNKYQIPIYDERKNSGILRTLMVRIGI 211 Query: 110 LTSQSDQAIVTLIYHRLLDDAW-RECAIRLRDALHARKYQIQLIGRANKTKICLD----- 163 T + +T +A RE RL + I + KT + + Sbjct: 212 ATGEVQVVFITNSVKLPQKNALIREINQRLPQVVS-----IMQNVQNKKTSVVMGEETIH 266 Query: 164 ---RDYVDERLTVAGRTLIYRQIENSFTQPNAG-INVHMLEWVLAATKGIQGDLLELYCG 219 ++ ++ERL L + +F Q N +V E V A +++ YCG Sbjct: 267 LWGKEAIEERLN----ELTFDLSARAFFQLNPQQTSVLYQEGVKALDLSKNETVVDAYCG 322 Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279 G L +A + V ++I ++E A+ N N +++E + F Sbjct: 323 VGTIGLSVAPYAKEVRGMDIIPQAIENAQENAHRIGAQNTHYETGTAEELL-----PKWF 377 Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILST 337 N ++ +I VDPPR+GLD+ + + P ++YISCN +L RDL L+ Sbjct: 378 N-------EGFKPDSIIVDPPRTGLDERLLQALLKQPPKKMVYISCNVSTLARDLVQLAK 430 Query: 338 THTIERLALFDQFPYTRHMECGVLLVRK 365 +E L D FP T E V L RK Sbjct: 431 VFHVEYLQSVDMFPQTARCEVVVKLTRK 458 >gi|290770981|emb|CBK33770.1| 23S rRNA m(5)U 1939 methyltransferase [Streptococcus pyogenes] Length = 451 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 49/183 (26%), Positives = 83/183 (45%), Gaps = 16/183 (8%) Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 SF Q N + + + +A + + D+ ++ Y G G L A+ V VE+ + +V Sbjct: 280 SFYQVNTVMAEKLYQTAIAFSDLSKDDIVIDAYSGIGTIGLSFAKTVKAVYGVEVIEAAV 339 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 A+ N A N + N V +++ ++ + I VDPPR GL Sbjct: 340 RDAQQNAALNGITNAYFVADTAEHAMATWAKD------------GIKPSVILVDPPRKGL 387 Query: 305 DDATV-GMVQAYPH-ILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVL 361 ++ + V P I Y+SCNP ++ RD+ + + ++ D FP T H+EC L Sbjct: 388 TESFIQASVAMGPQKITYVSCNPATMARDIKRYQELGYKLAKVQPVDLFPQTHHVECVAL 447 Query: 362 LVR 364 LV+ Sbjct: 448 LVK 450 >gi|332362207|gb|EGJ40007.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis SK1056] Length = 456 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 43/157 (27%), Positives = 70/157 (44%), Gaps = 14/157 (8%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L++ YCG G A+ + ++I ++E A+ N +N +++E Sbjct: 308 LIDAYCGVGTIGFSFAKRVKSLRGMDIIPEAIEDAKRNAKRMGFDNTLYEAGTAEEIIPR 367 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCR 330 E YR + VDPPR+GLDD + + Y ++Y+SCN +L R Sbjct: 368 WYAE------------GYRANALIVDPPRTGLDDKLLETIVHYAPEKMVYVSCNVSTLAR 415 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRKPS 367 DL LS + + + D FP+T E V L ++ S Sbjct: 416 DLVKLSKVYDVRYIQSVDMFPHTARTEAVVKLSKRDS 452 >gi|313667852|ref|YP_004048136.1| tRNA methyltransferase [Neisseria lactamica ST-640] gi|313005314|emb|CBN86747.1| putative tRNA methyltransferase [Neisseria lactamica 020-06] Length = 452 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 51/177 (28%), Positives = 80/177 (45%), Gaps = 15/177 (8%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 FTQ N N M+ V+ +G+ + +L+CG GNFSL +A+ V+ +E A+ Sbjct: 265 GDFTQINTDTNRLMVSRVVKMLDIRRGERIADLFCGLGNFSLPMAKSGADVVGIEGAENL 324 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 V AR N N + +F A F+ + RF + +DPPRSG Sbjct: 325 VRRARQNARLNGCDR-------QTDFIAA----NLFDCTEKTVASWERFDKMLIDPPRSG 373 Query: 304 LDDATVGMVQAY--PHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHME 357 + + Y I+Y+SCNP +L RD +L + + + + + F T H E Sbjct: 374 AYEVVKSLHTPYLPQKIVYVSCNPSTLARDAGVLVEKGYMLSQAGIMNMFAQTSHTE 430 >gi|186681361|ref|YP_001864557.1| RNA methyltransferase [Nostoc punctiforme PCC 73102] gi|186463813|gb|ACC79614.1| RNA methyltransferase, TrmA family [Nostoc punctiforme PCC 73102] Length = 468 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 47/155 (30%), Positives = 71/155 (45%), Gaps = 19/155 (12%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L++ YCG G +L LA+ +E+ +VE A N N ++NV + + ++ Sbjct: 313 LVDAYCGIGTLTLPLAKKVRIATGLEVQPAAVEQALLNAHCNGIDNVTFLVGAVEKLLPK 372 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYPH-ILYISCNPDSLCR 330 M E + +DPPR G D A + + Q P I+Y+SC +L R Sbjct: 373 MGTIPE---------------VVILDPPRKGCDRAVIDTLRQLKPSRIVYVSCKVATLAR 417 Query: 331 DLSILS--TTHTIERLALFDQFPYTRHMECGVLLV 363 DL +L +TI R+ D FP T H+E LV Sbjct: 418 DLKLLCQDGQYTITRVQPADFFPQTAHVEAAAFLV 452 >gi|322833209|ref|YP_004213236.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Rahnella sp. Y9602] gi|321168410|gb|ADW74109.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Rahnella sp. Y9602] Length = 376 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 49/168 (29%), Positives = 79/168 (47%), Gaps = 20/168 (11%) Query: 200 EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259 +WV +G + +L+CG G F L A ++ +EI+ ++ A+ + + NV Sbjct: 227 DWVRG--RGDIRSMWDLFCGVGGFGLHCATPQMKLTGIEISAEAIACAKESAVRLGLQNV 284 Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPH 317 + + S F + D+ + V+PPR G+ A + A Sbjct: 285 EFQALDSTGFATGK------GEVPDL---------VLVNPPRRGIGKALCEYLSHMAPDT 329 Query: 318 ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 ILY SCN ++ +DL++L H I R+ LFD FP+T H E LLVR+ Sbjct: 330 ILYSSCNAQTMAQDLALLPDYH-ILRVQLFDMFPHTAHYEVMALLVRR 376 >gi|300214218|gb|ADJ78634.1| tRNA (Uracil-5-)-methyltransferase [Lactobacillus salivarius CECT 5713] Length = 459 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 44/155 (28%), Positives = 74/155 (47%), Gaps = 14/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L++ YCG G L ++ V ++I ++E A+ N + N+ + Sbjct: 317 LVDAYCGVGTIGLFVSPDAKEVRGMDIIPEAIEDAKKNAELSGRKNI---------HYEV 367 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY-PH-ILYISCNPDSLCR 330 + E F + +++ + VDPPR+GLDD + + Y P+ +Y+SCNP +L R Sbjct: 368 GKAEDLFAKWTK---NNFVPDALVVDPPRTGLDDKMIETILKYRPNKFVYVSCNPSTLAR 424 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 DL L + +E + D FP T +E V L +K Sbjct: 425 DLVKLVKIYNVEYIQSVDMFPQTARVEAVVKLSKK 459 >gi|253996084|ref|YP_003048148.1| 23S rRNA 5-methyluridine methyltransferase [Methylotenera mobilis JLW8] gi|253982763|gb|ACT47621.1| RNA methyltransferase, TrmA family [Methylotenera mobilis JLW8] Length = 458 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 57/199 (28%), Positives = 88/199 (44%), Gaps = 29/199 (14%) Query: 178 LIYRQIENSFTQPNAGINVHMLEWV--LAATKGIQGDLLELYCGNGNFSLVLARHFDRVL 235 L Y N FTQ N IN M+ L A + + + + +CG GNF+L +AR +VL Sbjct: 277 LTYPFKPNEFTQVNPQINQVMIRRAMQLLAPQAHE-KIADFFCGIGNFTLPIARSGAQVL 335 Query: 236 AVEIAKPSVEAARYNIAANHVNNVK-----IVRMSSKEFTQAMRREREFNRLKDIDIHSY 290 +E VE A + N + +VK + +M+ + T+ Sbjct: 336 GLEGLANLVERANESAQLNEIKHVKFGVADLFKMTPEALTELG----------------- 378 Query: 291 RFKTIFVDPPRSGLDDATVGM-VQAYP-HILYISCNPDSLCRDLSIL--STTHTIERLAL 346 RF VDPPR G + + P I+Y+SCNP +L RD +L + ++ + Sbjct: 379 RFDKWLVDPPRDGAFELVKALDASNQPGSIVYVSCNPATLARDAGVLVNEKGYQLQAAGV 438 Query: 347 FDQFPYTRHMECGVLLVRK 365 + FP+T H+E L K Sbjct: 439 INMFPHTAHVESIALFTLK 457 >gi|332199219|gb|EGJ13297.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae GA41317] Length = 458 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 42/153 (27%), Positives = 68/153 (44%), Gaps = 14/153 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L++ YCG G A+ + ++I ++E A+ N +N +++E Sbjct: 308 LIDAYCGVGTIGFAFAKKVKTLRGMDIIPEAIEDAKRNAKRMGFDNTHYEAGTAEEIIPR 367 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330 +E YR + VDPPR+GLDD + + Y ++YISCN +L R Sbjct: 368 WYKE------------GYRADALIVDPPRTGLDDKLLDTILTYVPEKMVYISCNVSTLAR 415 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363 DL L + + + D FP+T E V L+ Sbjct: 416 DLVRLVEVYDLHYIQSVDMFPHTARTEAVVKLI 448 >gi|317488920|ref|ZP_07947450.1| hypothetical protein HMPREF1023_01149 [Eggerthella sp. 1_3_56FAA] gi|316911994|gb|EFV33573.1| hypothetical protein HMPREF1023_01149 [Eggerthella sp. 1_3_56FAA] Length = 405 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 57/200 (28%), Positives = 86/200 (43%), Gaps = 20/200 (10%) Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDR-V 234 L +R SF Q NA + +L G G ++ YCG G LV A+ R V Sbjct: 216 LSFRISSQSFYQVNA-VQTEVLYERAIDLAGFTGSETAIDAYCGTGTIGLVAAKRGARQV 274 Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294 + V+ +V AR N N V N + + F MR D+ Sbjct: 275 IGVDTVASAVRDARENAKHNGVENARFAVGDAGAF---MRERAAAGDAVDV--------- 322 Query: 295 IFVDPPRSGLDDA--TVGMVQAYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFP 351 + +DPPR+G + + A I+YISCNP + RDL+ L + + + D FP Sbjct: 323 LLMDPPRAGSSEEFLAAAVTLAPRRIVYISCNPTTQVRDLAFLRQRGYAVRTVQPVDMFP 382 Query: 352 YTRHMECGVLLVRKPSGWHQ 371 +T H+E + LV + G+ + Sbjct: 383 HTDHIET-IALVERVEGFFE 401 >gi|307941543|ref|ZP_07656898.1| 23S rRNA [Roseibium sp. TrichSKD4] gi|307775151|gb|EFO34357.1| 23S rRNA [Roseibium sp. TrichSKD4] Length = 422 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 65/217 (29%), Positives = 97/217 (44%), Gaps = 41/217 (18%) Query: 170 RLTVAGRTLIYRQIE------NSFTQPNAGI-------NVHMLEWVLAATKGIQGDLLEL 216 RLTV G TL+ + ++ T P G + WVL G + +L Sbjct: 214 RLTVNGETLLEIRPPLLDMGGSALTPPPGGFVQATKDAEEALSAWVLKGV-GKAKQVADL 272 Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276 + G+G F+L LAR +V AVE P+++A + A +K + M ++ R Sbjct: 273 FAGSGTFALRLARQA-KVHAVEGEAPALKA--IDTALRRSQGLKTLTMEKRDL---FRSP 326 Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSG-------LDDATVGMVQAYPHILYISCNPDSLC 329 LKD D + DPPR+G L ++TV V A +SCNP + Sbjct: 327 LIAEELKDYD-------AVVFDPPRAGAQAQAEQLANSTVKTVVA------VSCNPATFA 373 Query: 330 RDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRK 365 RDL IL + ++ + DQF Y+RH+E +L RK Sbjct: 374 RDLRILIDGGYELQSVTPVDQFLYSRHIEVVGILTRK 410 >gi|254384466|ref|ZP_04999807.1| RNA methyltransferase [Streptomyces sp. Mg1] gi|194343352|gb|EDX24318.1| RNA methyltransferase [Streptomyces sp. Mg1] Length = 443 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 59/206 (28%), Positives = 95/206 (46%), Gaps = 27/206 (13%) Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGN 222 R +V ER GRT YR F Q + +++ V+ +G++ L+LYCG G Sbjct: 251 RPFVRERAD--GRT--YRVGMGGFWQVHPQAADTLIKAVMQGLMPRKGEMALDLYCGVGI 306 Query: 223 FSLVLARHFDR---VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279 F+ LA VL +E K +VE AR+N+ + VR+ + + + Sbjct: 307 FAGALAERLGETGAVLGIESTKRAVEDARHNL-----EDFPRVRIEQGKVEAILPK---- 357 Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILST 337 + + D+ + +DPPR+G TV + I Y++C+P +L RDL Sbjct: 358 TGITECDL-------VVLDPPRAGAGKQTVRHIAGLSARRIAYVACDPAALARDLGYFKD 410 Query: 338 -THTIERLALFDQFPYTRHMECGVLL 362 + + L +FD FP T H+EC +L Sbjct: 411 HGYKVRTLRVFDLFPMTHHVECVAIL 436 >gi|302554686|ref|ZP_07307028.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptomyces viridochromogenes DSM 40736] gi|302472304|gb|EFL35397.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptomyces viridochromogenes DSM 40736] Length = 442 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 64/206 (31%), Positives = 98/206 (47%), Gaps = 27/206 (13%) Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGN 222 R +V ER GRT +R F Q + ++ V+ +GD+ L+LYCG G Sbjct: 250 RPFVRERAD--GRT--HRVGGGGFWQVHPKSADTLVTAVMQGLLPRKGDMALDLYCGVGL 305 Query: 223 FSLVLA-RHFDR--VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279 F+ LA R D+ VL +E K +VE AR+N+A VR+ + + R Sbjct: 306 FAGALADRVGDQGAVLGIESGKRAVEDARHNLA-----EFDRVRIEQGKVESVLPR---- 356 Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSIL-S 336 + ++D+ I +DPPR+G TV + + I Y++C+P +L RDL Sbjct: 357 TGITEVDL-------IVLDPPRAGAGRKTVEHLTSLRARRIAYVACDPAALARDLGYFRD 409 Query: 337 TTHTIERLALFDQFPYTRHMECGVLL 362 + + L FD FP T H+EC +L Sbjct: 410 GGYRVRTLRAFDLFPMTHHVECVAIL 435 >gi|257126196|ref|YP_003164310.1| (uracil-5)-methyltransferase [Leptotrichia buccalis C-1013-b] gi|257050135|gb|ACV39319.1| (Uracil-5)-methyltransferase [Leptotrichia buccalis C-1013-b] Length = 476 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 39/158 (24%), Positives = 74/158 (46%), Gaps = 15/158 (9%) Query: 210 QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269 + + +L+ G G ++++ +V +E+ +VE A N N++ N + Sbjct: 328 EATVFDLFSGTGTIGQIVSKKAKQVYGIELVPEAVEKANENAKLNNIQNAHFIAGDV--- 384 Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDS 327 F +L + D + + +DPPR+G+ + T+ + Y +I+Y+SCNP + Sbjct: 385 ---------FAKLDEFDNDGIKPDILILDPPRAGVGEKTITKLVKYNTKNIIYVSCNPKT 435 Query: 328 LCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364 L DL + + R ++ D FP T H+E LL + Sbjct: 436 LMTDLIKFGEFGYRLVRCSVVDMFPVTPHLEVVCLLEK 473 >gi|332200601|gb|EGJ14673.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae GA41317] Length = 451 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 46/156 (29%), Positives = 78/156 (50%), Gaps = 15/156 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ Y G G L +A+H V VE+ +VE ++ N N+++N V +++ A Sbjct: 308 IIDAYSGIGTIGLSVAKHVKEVYGVELIPEAVENSKKNAQLNNISNAHYVCDTAE---NA 364 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV--GMVQAYPHILYISCNPDSLCR 330 M+ N LKD + I VDPPR GL ++ + I YISCN ++ R Sbjct: 365 MK-----NWLKD----GIQPTVILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMAR 415 Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVRK 365 D+ + + ++++ D FP T H+E LLV++ Sbjct: 416 DIKLYQELGYELKKVQPVDLFPQTHHVEAVSLLVKE 451 >gi|283784622|ref|YP_003364487.1| 23S rRNA (uracil-5-)-methyltransferase [Citrobacter rodentium ICC168] gi|282948076|emb|CBG87641.1| 23S rRNA (uracil-5-)-methyltransferase [Citrobacter rodentium ICC168] Length = 375 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 44/155 (28%), Positives = 73/155 (47%), Gaps = 18/155 (11%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + +L+CG G F L A R+ +EI+ ++ A + A + N++ + S F A Sbjct: 237 MWDLFCGVGGFGLHCATPEMRLTGIEISPEAIACATQSAAELGLTNLQFQALDSTRFATA 296 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCR 330 + + V+PPR G+ A + A I+Y SCN ++ + Sbjct: 297 QESVPQL---------------VLVNPPRRGIGKALCDYLGKMAPQFIIYSSCNAQTMAK 341 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 D++ L+ + IER+ LFD FP+T H E LL+R Sbjct: 342 DIASLAG-YRIERVQLFDMFPHTAHYEVLTLLIRN 375 >gi|251789980|ref|YP_003004701.1| 23S rRNA methyluridine methyltransferase [Dickeya zeae Ech1591] gi|247538601|gb|ACT07222.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Dickeya zeae Ech1591] Length = 376 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 44/156 (28%), Positives = 72/156 (46%), Gaps = 18/156 (11%) Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271 L +L+CG G F L A + +EI+ ++ AR + A + NV + S F Sbjct: 236 SLWDLFCGVGGFGLHCAGADTPLTGIEISPEAIACARRSAAQLGLTNVSFAALDSTRFAV 295 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLC 329 + + + V+PPR G+ + A P++LY SCN +S+ Sbjct: 296 GEAQTPDL---------------VIVNPPRRGIGAELCDYLSHMAPPYLLYSSCNAESMA 340 Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 +D++ L + I ++ LFD FP+T H E LL R+ Sbjct: 341 KDITRLP-AYQIRQVQLFDMFPHTAHYEVLTLLQRR 375 >gi|262041046|ref|ZP_06014265.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259041604|gb|EEW42656.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 375 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 55/187 (29%), Positives = 89/187 (47%), Gaps = 25/187 (13%) Query: 185 NSFTQPNAGINVHML----EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240 SF Q N + + +WV A +Q + +L+CG G F L A R+ +EIA Sbjct: 207 QSFFQTNPAVASRLYATARDWVRALP--VQ-HMWDLFCGVGGFGLHCATPTMRLTGIEIA 263 Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300 ++ AR + A ++N+ + S +F E + +L + V+PP Sbjct: 264 PEAIACARQSAAQLGLSNLHFQALDSTQFAT---HEADTPQL------------VLVNPP 308 Query: 301 RSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMEC 358 R G+ + A +I+Y SCN ++ D++ LS + +ER+ LFD FP+T H E Sbjct: 309 RRGIGAELCDYLSRMAPLYIIYSSCNARTMATDIARLS-GYRVERVQLFDMFPHTAHYEV 367 Query: 359 GVLLVRK 365 LLVR+ Sbjct: 368 LTLLVRE 374 >gi|212704019|ref|ZP_03312147.1| hypothetical protein DESPIG_02072 [Desulfovibrio piger ATCC 29098] gi|212672524|gb|EEB33007.1| hypothetical protein DESPIG_02072 [Desulfovibrio piger ATCC 29098] Length = 511 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 44/147 (29%), Positives = 69/147 (46%), Gaps = 12/147 (8%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 LL++YCG G L+ A HFD VL +E + +V A N N + + A Sbjct: 366 LLDVYCGAGAPGLLAAGHFDEVLGMEYDRRAVLLAERNARRFGFGNCRYEVGDAARLLTA 425 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGL-DDATVGMVQAYPH-ILYISCNPDSLCR 330 + RE + +DPPR G+ +A ++ P ++YISCNP +L R Sbjct: 426 LAREH----------GPGHWDHALLDPPRGGVAPEALEALLHLAPERLVYISCNPATLAR 475 Query: 331 DLSILSTTHTIERLALFDQFPYTRHME 357 D LS + + ++ D FP++ H+E Sbjct: 476 DARALSADYELMQVTPLDLFPHSPHVE 502 >gi|126661911|ref|ZP_01732910.1| putative RNA methyltransferase [Flavobacteria bacterium BAL38] gi|126625290|gb|EAZ95979.1| putative RNA methyltransferase [Flavobacteria bacterium BAL38] Length = 470 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 54/207 (26%), Positives = 95/207 (45%), Gaps = 22/207 (10%) Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNG 221 RDY+ E + L + SF Q N+ + L + G+ G+ + +LY G G Sbjct: 281 RDYILEEM----EGLHFSINAKSFYQTNSD-QAYELYKITREFAGLTGNETVYDLYTGTG 335 Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281 + +++ +V+ VE ++ A+ N N++ N + + M+ N Sbjct: 336 TIAQFVSKQAKKVIGVEAVPEAIIDAKANATRNNITNCEF-------YVGDMK-----NV 383 Query: 282 LKDIDIHSY-RFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILSTT 338 D I+ + + I DPPR G+ V M+ P I+Y+SCN + RDL+++ Sbjct: 384 FNDEFINQHGQPDVIITDPPRDGMHKDVVEMLLKTDVPKIVYVSCNSATQARDLALMDEK 443 Query: 339 HTIERLALFDQFPYTRHMECGVLLVRK 365 + + R+ D FP T H+E VLL ++ Sbjct: 444 YKVVRVRPVDMFPQTHHVENVVLLEKR 470 >gi|33601990|ref|NP_889550.1| 23S rRNA 5-methyluridine methyltransferase [Bordetella bronchiseptica RB50] gi|50401528|sp|Q7WI42|RUMA_BORBR RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|33576428|emb|CAE33506.1| conserved hypothetical protein [Bordetella bronchiseptica RB50] Length = 466 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 69/261 (26%), Positives = 109/261 (41%), Gaps = 38/261 (14%) Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDE---R 170 D+AIV ++ H L +R A H ++ +Q + T L+R++ D Sbjct: 190 GDEAIVLVLRHLLPLTDGDIAVLRAFAAEHGVQWWLQ--SKGPDTVHPLEREHADALAYT 247 Query: 171 LTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATK-GIQGDLLELYCGNGNFSLVLAR 229 L G + YR + FTQ N IN M+ L Q + +L+CG GNF+L LA Sbjct: 248 LPEFGLRMPYRPTD--FTQVNHAINRAMVSRALKLLDVQPQDRVADLFCGLGNFTLPLAT 305 Query: 230 HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK--DIDI 287 + VE +K + A + AA H + F L ++D+ Sbjct: 306 QGREAVGVEGSKALTDRA-HEAAARH----------------GLGERTRFATLNLFEVDV 348 Query: 288 HSYR----FKTIFVDPPRSGLDDATVGMVQAYP-----HILYISCNPDSLCRDLSIL--S 336 R F + +DPPR G + P I+Y+SCNP +L RD +I+ Sbjct: 349 QWLRGLGYFDRMLIDPPREGAQAVAQALSLLAPGERPRRIVYVSCNPGTLARDAAIMVHE 408 Query: 337 TTHTIERLALFDQFPYTRHME 357 + + + + FP+T H+E Sbjct: 409 GGYALRSAGVINMFPHTGHVE 429 >gi|153002005|ref|YP_001367686.1| 23S rRNA methyluridine methyltransferase [Shewanella baltica OS185] gi|167012645|sp|A6WS34|RUMB_SHEB8 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName: Full=23S rRNA(M-5-U747)-methyltransferase gi|151366623|gb|ABS09623.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Shewanella baltica OS185] Length = 390 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 43/155 (27%), Positives = 74/155 (47%), Gaps = 16/155 (10%) Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271 L +L+CG G F L A + + +EI ++ A+ + + NV+ + + S +F + Sbjct: 249 SLWDLFCGVGGFGLHCASNDITLTGIEIEAEAIACAQMSAQMMGLENVQFMALDSTDFAK 308 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLC 329 + + I V+PPR G+ +A + + ILY SCNP +L Sbjct: 309 GKSA-------------ADKPDLIIVNPPRRGIGEALCQSLSEFAPKAILYSSCNPKTLA 355 Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 +DL + H + ++ LFD FP+T H E +LV+ Sbjct: 356 KDLEHIQGYH-LTKVQLFDLFPHTDHFEVLAMLVK 389 >gi|91776203|ref|YP_545959.1| 23S rRNA 5-methyluridine methyltransferase [Methylobacillus flagellatus KT] gi|123078812|sp|Q1H069|RUMA_METFK RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|91710190|gb|ABE50118.1| 23S rRNA m(5)U-1939 methyltransferase [Methylobacillus flagellatus KT] Length = 445 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 56/195 (28%), Positives = 83/195 (42%), Gaps = 26/195 (13%) Query: 177 TLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVL 235 L Y FTQ N IN ML + + G+ + + +CG GNF+L +AR V Sbjct: 253 NLTYPFKPTEFTQVNPYINRVMLRRAMQLLQPQPGERIADFFCGLGNFTLPIARSGASVF 312 Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY-RFKT 294 +E + V A + A N + Q +E + ++ + S RF Sbjct: 313 GMEGSAALVARANESAALNSLAG------------QVEFQEADLFKMTPALLQSLGRFDK 360 Query: 295 IFVDPPRSG----------LDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERL 344 +DPPR G ++DA I+Y+SCNP +L RD IL T L Sbjct: 361 WLIDPPRDGAIELVKALPDIEDADADTSHVPQRIVYVSCNPATLARDAGILVHTKGYRLL 420 Query: 345 A--LFDQFPYTRHME 357 A + + FP+T H+E Sbjct: 421 ASGVINMFPHTSHVE 435 >gi|237745481|ref|ZP_04575961.1| 23S rRNA 5-methyluridine methyltransferase [Oxalobacter formigenes HOxBLS] gi|229376832|gb|EEO26923.1| 23S rRNA 5-methyluridine methyltransferase [Oxalobacter formigenes HOxBLS] Length = 451 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 73/278 (26%), Positives = 116/278 (41%), Gaps = 40/278 (14%) Query: 100 LRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTK 159 +R ++ QI+ +VT + R++ +E RL+ Q L + T Sbjct: 185 IRQQVPQIEVAIGNDRDGLVTALLLRIMAPLTKEDENRLKRFADDHDIQWWLQSKGPDT- 243 Query: 160 ICLDRDYVDERLTVAGRTLIYRQIE---------NSFTQPNAGINVHMLEWVLAATKGIQ 210 I L AG L YR E FTQ N IN ++ + + + Sbjct: 244 ITL--------FYPAGNKLKYRLPEFNVEMPFKPGDFTQVNHHINPVLVSRAIRLLEIEK 295 Query: 211 GD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269 D + +L+CG GNFSL +ARH V+ +E ++ E A+ + N + +E Sbjct: 296 NDRIADLFCGLGNFSLPIARHAAEVVGIEGSEILTERAKESALLNGL----------EEK 345 Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH--------ILYI 321 T+ R +KD I F + +DPPR G + + H I+Y+ Sbjct: 346 TRFETRNLFEMTVKDW-IGLGPFDKVLIDPPRDGAAAVCQSIAELGKHQEALRPRRIVYV 404 Query: 322 SCNPDSLCRDLSILST--THTIERLALFDQFPYTRHME 357 SCNP +L RD IL T + + + + FP+T H+E Sbjct: 405 SCNPSTLARDAGILVTEGGYRLHLAGVVNMFPHTSHVE 442 >gi|289207775|ref|YP_003459841.1| RNA methyltransferase, TrmA family [Thioalkalivibrio sp. K90mix] gi|288943406|gb|ADC71105.1| RNA methyltransferase, TrmA family [Thioalkalivibrio sp. K90mix] Length = 452 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 58/198 (29%), Positives = 88/198 (44%), Gaps = 23/198 (11%) Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAK 241 + F Q +AGIN M+ L A G +L+L+CG GNF+L LAR Sbjct: 264 MPTDFIQVHAGINRKMVPQALEALDLQPGQRVLDLFCGLGNFTLPLARSV---------- 313 Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAM---RRER----EFNRLKDIDIHSYRFKT 294 S + V++ + R + Q + R ER + LK+ R+ Sbjct: 314 -SDGEVPGEVVGVEVDDAMLARARANARDQGIANTRYERADLDDVEALKNAGWLVERYDR 372 Query: 295 IFVDPPRSGLDDATVGMV-QAYPHILYISCNPDSLCRDLSILSTTHT--IERLALFDQFP 351 + +DPPR+G + Q ++Y+SCNP +L RD L H +ER + D FP Sbjct: 373 VLLDPPRTGAAAVIEALAPQRIERMVYVSCNPATLARDAERLVHHHGYRLERAGIMDMFP 432 Query: 352 YTRHMECGVLLVR-KPSG 368 +T H+E + R +P G Sbjct: 433 HTAHVESMAVFRRDEPRG 450 >gi|256848539|ref|ZP_05553980.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus coleohominis 101-4-CHN] gi|256714591|gb|EEU29571.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus coleohominis 101-4-CHN] Length = 474 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 48/152 (31%), Positives = 67/152 (44%), Gaps = 14/152 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L++ Y G G L LA V +EI +V A N N++ N K S++E Sbjct: 331 LIDAYAGIGTIGLALASRVHEVRGMEIIPEAVADANQNATLNNITNAKYETGSAEELLPK 390 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYP-HILYISCNPDSLCR 330 R E F + VDPPR+GLD+ + + Q P YISCN SL R Sbjct: 391 WRAE------------GLHFDALVVDPPRTGLDNKLIQQILQEKPTKFAYISCNMASLAR 438 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLL 362 +L+ L T+ ++ + D P T E V L Sbjct: 439 NLARLVPTYRVDYIQPIDMMPQTARCEAVVKL 470 >gi|126173113|ref|YP_001049262.1| 23S rRNA methyluridine methyltransferase [Shewanella baltica OS155] gi|167012644|sp|A3D0Y0|RUMB_SHEB5 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName: Full=23S rRNA(M-5-U747)-methyltransferase gi|125996318|gb|ABN60393.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Shewanella baltica OS155] Length = 390 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 49/186 (26%), Positives = 84/186 (45%), Gaps = 23/186 (12%) Query: 185 NSFTQPNAGINVHML----EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240 SF Q N + + EWV + L +L+CG G F L A + + +EI Sbjct: 221 KSFFQTNPQVAAQLYQTAREWVAEFSPR---SLWDLFCGVGGFGLHCASNDITLTGIEIE 277 Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300 ++ A+ + + NV+ + + S +F + + + I V+PP Sbjct: 278 AEAIACAQMSAQMMGLENVQFMALDSTDFAKGKSA-------------ADKPDLIIVNPP 324 Query: 301 RSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMEC 358 R G+ +A + + ILY SCNP +L +DL + H + ++ LFD FP++ H E Sbjct: 325 RRGIGEALCQSLSEFAPKAILYSSCNPKTLAKDLEHIQGYH-LTKVQLFDLFPHSDHFEV 383 Query: 359 GVLLVR 364 +LV+ Sbjct: 384 LAMLVK 389 >gi|325292120|ref|YP_004277984.1| RNA methyltransferase [Agrobacterium sp. H13-3] gi|325059973|gb|ADY63664.1| RNA methyltransferase [Agrobacterium sp. H13-3] Length = 416 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 55/175 (31%), Positives = 86/175 (49%), Gaps = 16/175 (9%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 FTQ M E VLA G + +L+CG+G F+L LAR RV AVE + Sbjct: 249 GGFTQATKQAEDAMAELVLAHV-GKSKRIADLFCGSGTFALRLAR-VGRVHAVEAEDKPL 306 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 +A + AA + +K V + ++ RR + +K+ D + DPPR+G Sbjct: 307 KA--LDFAARNTQGLKPVSIEKRDL---FRRPLMTSEMKNYD-------AVVFDPPRAGA 354 Query: 305 DDATVGMVQ-AYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHME 357 + + + A I+ +SCNP +L RDL+IL + + R+ DQF ++ H+E Sbjct: 355 EVQCRELARSAVKKIVAVSCNPLTLARDLAILVEGGYRVTRVTPVDQFLWSPHVE 409 >gi|294791006|ref|ZP_06756164.1| putative tRNA (Uracil-5-)-methyltransferase [Scardovia inopinata F0304] gi|294458903|gb|EFG27256.1| putative tRNA (Uracil-5-)-methyltransferase [Scardovia inopinata F0304] Length = 448 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 49/157 (31%), Positives = 77/157 (49%), Gaps = 16/157 (10%) Query: 213 LLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270 + +LY G+G F+L A F R+L+VE A +V+ AR N AA ++ + + Sbjct: 297 IWDLYSGSGLFTLAAATAFPQARILSVEGAPVAVKNARENSAAAGLDTIT---------S 347 Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSL 328 Q + L D + + I +DPPRSG ++ + I+YISCNP SL Sbjct: 348 QEGDVYKTLKNLSDTTLAHPQI--ILLDPPRSGAGRKVCNLLSSSQAETIIYISCNPASL 405 Query: 329 CRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364 RD+S L + + + +D +P T H+E L+ R Sbjct: 406 ARDISYLRQGGYELTSIHAYDIYPLTHHVETICLMSR 442 >gi|227893144|ref|ZP_04010949.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus ultunensis DSM 16047] gi|227865010|gb|EEJ72431.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus ultunensis DSM 16047] Length = 460 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 41/156 (26%), Positives = 74/156 (47%), Gaps = 15/156 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L++ Y G G ++ A V+ +E +V+ A +N+ NH+ N ++ S+++ Sbjct: 317 LIDAYSGVGTLGILAADRVKHVVGIETIPEAVKDAEHNVELNHIKNADYIQGSTEKV--- 373 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYPH-ILYISCNPDSLCR 330 L ++ + VDPPR+GL + + + + P +YISCNP +L + Sbjct: 374 ---------LPELQNSGVSIDALIVDPPRTGLAKSLIKTILRVKPQTFVYISCNPSTLAQ 424 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMEC-GVLLVRK 365 DL +LS + + + D P T E L++RK Sbjct: 425 DLVLLSEAYDVRVIQNVDMLPQTPRCEAIAKLILRK 460 >gi|330837297|ref|YP_004411938.1| (Uracil-5)-methyltransferase [Spirochaeta coccoides DSM 17374] gi|329749200|gb|AEC02556.1| (Uracil-5)-methyltransferase [Spirochaeta coccoides DSM 17374] Length = 392 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 80/351 (22%), Positives = 144/351 (41%), Gaps = 49/351 (13%) Query: 34 QIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMR--IDYF-MPGSLLINALMIEM 90 +I P R F+ G +L H+ D Q +E+ R ID G + ++L++E Sbjct: 56 EILEPSPQRVAPRCPFYDECGGCNLMHLSEDSQAEEKQRLFIDAMERTGGIPRDSLVLEP 115 Query: 91 MATIRLEPLLRAKLFQIDYLTSQS------DQAIVTLIYHRLLDDAWRECAIRLRDALHA 144 A+ F +D Q+ +++V L +L L + L Sbjct: 116 PASATGWEYRSRSAFHVDERLRQAGFLGRRSRSLVPLPSCPVL-------VSELSEVLAG 168 Query: 145 RKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIEN--------SFTQPNAGINV 196 R ++ R K + + + G+ + ++ F Q N + Sbjct: 169 RDERLWKAARKVKESLARISVFAGDADISYGKIPVVATVDGIPFHVSAQVFFQSNRLLMP 228 Query: 197 HMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV 256 ++ +VL+ KG + +++LY G G FS L R V+AVE +E AR N Sbjct: 229 SLIRFVLSHVKGER--VMDLYAGVGVFSAFLEREGHTVIAVEKEPDCLELARLNAPRTRF 286 Query: 257 NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP 316 + +++++ +M S + T+ VDPPR+GL + ++ ++ Sbjct: 287 HTA-----ATEKWHPSM---------------SEKVDTVVVDPPRTGLAPSVPALIASWK 326 Query: 317 --HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 ++Y+SC+ +L RDL LS ++ +FD +P T H E V+L R Sbjct: 327 PERVIYVSCDSVTLARDLRKFLSEGYSPTIAQVFDLYPQTSHYEAAVVLDR 377 >gi|113954400|ref|YP_730547.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Synechococcus sp. CC9311] gi|113881751|gb|ABI46709.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Synechococcus sp. CC9311] Length = 464 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 64/210 (30%), Positives = 93/210 (44%), Gaps = 34/210 (16%) Query: 172 TVAGRTLIYRQIEN--------SFTQPNAG----INVHMLEWVLAATKGIQGDLLELYCG 219 T+AGR I + N +F Q N I + + W+L +G L++ YCG Sbjct: 265 TLAGRDCISERFCNLQLLLGTTTFFQINTDRAEQIVMVLRNWLL--QRGDCKRLIDAYCG 322 Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279 G SL +A V+ +EI SV+ AR N A N + + K F Sbjct: 323 IGTISLPVAAAGIGVVGLEINPASVQQARQNAALNGLTDAK--------FEAGDVASLLS 374 Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSIL-- 335 + L D D + VDPPR GL + + P + Y+SC+ +L RDL L Sbjct: 375 DYLPDHD-------ALVVDPPRKGLASDVLDAILNCPPKRLAYLSCDSATLARDLKRLVS 427 Query: 336 -STTHTIERLALFDQFPYTRHMECGVLLVR 364 + + I+R+ D FP T H+EC VL+ R Sbjct: 428 DNGPYAIDRIQPVDFFPQTTHLECLVLMER 457 >gi|50401526|sp|Q7W676|RUMA_BORPA RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase Length = 466 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 69/261 (26%), Positives = 109/261 (41%), Gaps = 38/261 (14%) Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDE---R 170 D+AIV ++ H L +R A H ++ +Q + T L+R++ D Sbjct: 190 GDEAIVLVLRHLLPLTDGDIAVLRAFAAEHGVQWWLQ--SKGPDTVHPLEREHADALAYT 247 Query: 171 LTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATK-GIQGDLLELYCGNGNFSLVLAR 229 L G + YR + FTQ N IN M+ L Q + +L+CG GNF+L LA Sbjct: 248 LPEFGLRMPYRPTD--FTQVNHAINRAMVSRALKLLDVQPQDRVADLFCGLGNFTLPLAT 305 Query: 230 HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK--DIDI 287 + VE +K + A + AA H + F L ++D+ Sbjct: 306 QGREAVGVEGSKALTDRA-HEAAARH----------------GLGERTRFATLNLFEVDV 348 Query: 288 HSYR----FKTIFVDPPRSGLDDATVGMVQAYP-----HILYISCNPDSLCRDLSIL--S 336 R F + +DPPR G + P I+Y+SCNP +L RD +I+ Sbjct: 349 QWLRGLGYFDRMLIDPPREGAQAVVQALSLLAPGERPRRIVYVSCNPGTLARDAAIMVHE 408 Query: 337 TTHTIERLALFDQFPYTRHME 357 + + + + FP+T H+E Sbjct: 409 GGYALRSAGVINMFPHTGHVE 429 >gi|171779969|ref|ZP_02920873.1| hypothetical protein STRINF_01756 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171281317|gb|EDT46752.1| hypothetical protein STRINF_01756 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 454 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 44/157 (28%), Positives = 74/157 (47%), Gaps = 19/157 (12%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ Y G G L A++ V VE+ + +V+ A+ N A N + N V S++ Sbjct: 308 VIDAYSGIGTIGLSFAKNVKAVYGVEVIEEAVKDAKRNAALNGITNAHYVADSAEHAMAT 367 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD----ATVGMVQAYPHILYISCNPDSL 328 ++ + I VDPPR GL + A+V M + YISCNP ++ Sbjct: 368 WSKD------------GIKPSVILVDPPRKGLTENFIKASVAMQPE--KVTYISCNPATM 413 Query: 329 CRDLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364 RD+ + + ++++ D FP T H+E VL+ R Sbjct: 414 ARDIKLYQELGYKLQKVQPVDLFPNTHHVETVVLMSR 450 >gi|116617299|ref|YP_817670.1| tRNA (uracil-5-)-methyltransferase related enzyme [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116096146|gb|ABJ61297.1| 23S rRNA m(5)U-1939 methyltransferase [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 496 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 95/384 (24%), Positives = 158/384 (41%), Gaps = 47/384 (12%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHDGDDLYHIM 62 Y QL K D L Q + FQ I P YR +A+F + GD L M Sbjct: 130 YPAQLRFKKDVLVQSLEKFQPKGWSNYDIRDTIGMDHPYEYRNKAQFPVRKIGDKLSVGM 189 Query: 63 FDQQTKERMRIDYF---MPGSL----LINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115 + + + + + + P ++ + L+ ++ +I E R + I SQ+ Sbjct: 190 YKRGSHDLVDLPVVHTQTPATMKVMRTVRELLDKLSVSIYNEDKNRGTVKTIVARVSQTT 249 Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLI------GRAN-----KTKICLDR 164 V L + D + A L +A++ ++ I GR + +T + Sbjct: 250 SE-VQLTFITNTDGFPGDTA--LIEAINQALPEVTGIFQNYNPGRTSLVWGEETLKLWGK 306 Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNF 223 DY++E+ V G+T ++ +F Q N + LAA D L++ Y G G Sbjct: 307 DYIEEK--VLGKT--FQLSPRAFMQLNHTQMSVVYNQALAALDLTHADKLVDAYAGVGTI 362 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 L LA V +EI +V+ A N NH++N ++++ + E Sbjct: 363 GLSLADKAGEVRGMEIIPEAVDDANQNATLNHISNAHYEVGTAEKLFPKWQSE------- 415 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDA-TVGMVQAYPH-ILYISCNPDSLCRDLSILSTTHTI 341 + + VDPPR+GLD A +++ P +YISCN +L RDL LS + + Sbjct: 416 -----GWIADALVVDPPRTGLDTALRREILRTQPEKFVYISCNASTLARDLVDLSKAYQV 470 Query: 342 ERLALFDQFPYTRHMECGVLLVRK 365 + + D FP T E V L ++ Sbjct: 471 DYIQSIDMFPQTARWEGVVKLTKR 494 >gi|317495762|ref|ZP_07954125.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Gemella moribillum M424] gi|316913939|gb|EFV35422.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Gemella moribillum M424] Length = 537 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 41/155 (26%), Positives = 75/155 (48%), Gaps = 15/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G SL A+ +V +EI + +V A N N++ N + + S++ Sbjct: 302 IIDAYCGIGTISLFAAQKVKKVYGIEIVEAAVLDALENAKNNNITNAEFLLGKSEDI--- 358 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330 +K + + + + + VDPPR G + + + A ++Y+SCNP +L R Sbjct: 359 ---------IKKLILQNIKLDAVIVDPPRKGCGENFLRDLAAMDIEKVVYVSCNPATLAR 409 Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364 D+ I+ + + + D FP T H+E LL + Sbjct: 410 DMGIMRRLGYKLGAVQPVDMFPGTYHVETVALLSK 444 >gi|315037858|ref|YP_004031426.1| RNA methyltransferase [Lactobacillus amylovorus GRL 1112] gi|325956332|ref|YP_004291744.1| RNA methyltransferase [Lactobacillus acidophilus 30SC] gi|312275991|gb|ADQ58631.1| RNA methyltransferase [Lactobacillus amylovorus GRL 1112] gi|325332897|gb|ADZ06805.1| RNA methyltransferase [Lactobacillus acidophilus 30SC] gi|327183151|gb|AEA31598.1| RNA methyltransferase [Lactobacillus amylovorus GRL 1118] Length = 459 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 40/156 (25%), Positives = 76/156 (48%), Gaps = 15/156 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L++ Y G G ++ A +V+ +E +V+ A++N+ NH+ N ++ ++++ Sbjct: 316 LIDAYSGVGTLGILAADRVKQVIGIETIPEAVKDAQHNVELNHIKNADYIQGATEKV--- 372 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYPH-ILYISCNPDSLCR 330 L ++ + VDPPR+GL + + + + P +YISCNP +L + Sbjct: 373 ---------LPELQNSGVSIDALIVDPPRTGLAKSLIKTILRVKPETFVYISCNPSTLAQ 423 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMEC-GVLLVRK 365 DL +LS + + + D P T E L++RK Sbjct: 424 DLVLLSEAYDVRLIQNVDMLPQTPRCEAIAKLVLRK 459 >gi|81299052|ref|YP_399260.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Synechococcus elongatus PCC 7942] gi|81167933|gb|ABB56273.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Synechococcus elongatus PCC 7942] Length = 455 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 51/154 (33%), Positives = 70/154 (45%), Gaps = 19/154 (12%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L +LYCG G +L LA VL +EI SV A+ N N ++NV+ R + E A Sbjct: 313 LFDLYCGVGTLTLPLASEVGSVLGLEILPESVVQAQQNADRNGISNVEF-RAGAVEILLA 371 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA-YPH-ILYISCNPDSLCR 330 E + +DPPR G + A + +++ P I Y+SCNP +L R Sbjct: 372 QIPESP--------------DAVLLDPPRKGCEPAVIEVLRDRQPQRIAYVSCNPATLAR 417 Query: 331 DLSILSTTHTIERLAL--FDQFPYTRHMECGVLL 362 DL L L + D FP T H+E LL Sbjct: 418 DLQALCAGDRYRLLLVQPLDFFPQTAHVETVALL 451 >gi|288941731|ref|YP_003443971.1| TrmA family RNA methyltransferase [Allochromatium vinosum DSM 180] gi|288897103|gb|ADC62939.1| RNA methyltransferase, TrmA family [Allochromatium vinosum DSM 180] Length = 440 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 55/188 (29%), Positives = 86/188 (45%), Gaps = 19/188 (10%) Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAK 241 + + FTQ N +N M++ L D +L+L+CG GNF+L LAR V+ VE Sbjct: 266 LPSDFTQVNLELNRRMVDQALDLLAPESDDAVLDLFCGLGNFTLPLARRSAEVVGVEGDA 325 Query: 242 PSVEAARYNIAANHVNNVK--IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299 VE A N N + NV+ + + ++ T A ++ RF +DP Sbjct: 326 GLVERACANAERNGLTNVQFHVADLQAELSTAAPWTQQ-------------RFTKALIDP 372 Query: 300 PRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTRHM 356 PRSG + + + ++Y+SC P +L RD L + + + D FP+T H+ Sbjct: 373 PRSGAWEVLDWLPRLGVERLVYVSCYPTTLARDADRLVNELGYRLRAAGVMDMFPHTSHV 432 Query: 357 ECGVLLVR 364 E L R Sbjct: 433 ESMALFER 440 >gi|291436762|ref|ZP_06576152.1| RNA methyltransferase [Streptomyces ghanaensis ATCC 14672] gi|291339657|gb|EFE66613.1| RNA methyltransferase [Streptomyces ghanaensis ATCC 14672] Length = 448 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 62/206 (30%), Positives = 100/206 (48%), Gaps = 27/206 (13%) Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGN 222 R +V ER GRT +R F Q + ++ V+ +GD L+LYCG G Sbjct: 256 RPFVRERAD--GRT--HRVGGGGFWQVHPQAADTLVTAVMQGLLPRKGDTALDLYCGVGL 311 Query: 223 FSLVLA-RHFDR--VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279 F+ LA R D+ VL +E + +VE AR+N+A + VR+ + + R Sbjct: 312 FAGALADRVGDQGAVLGIESGRRAVEDARHNLA-----DFPRVRIEQGKVESVLPR---- 362 Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSIL-S 336 + ++D+ + +DPPR+G TV + + I Y++C+P +L RDL+ Sbjct: 363 TGITEVDL-------VVLDPPRAGAGRKTVEHLSSLGARRIAYVACDPAALARDLAYFRD 415 Query: 337 TTHTIERLALFDQFPYTRHMECGVLL 362 + + L +FD FP T H+EC +L Sbjct: 416 GGYRVRTLRVFDLFPMTHHVECVAIL 441 >gi|104773677|ref|YP_618657.1| methyltransferase [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|103422758|emb|CAI97391.1| Methyltransferase [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] Length = 460 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 42/148 (28%), Positives = 71/148 (47%), Gaps = 14/148 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L++ Y G G ++ A +V+ +E +V A++N+ NHV N + + S Sbjct: 317 LIDAYSGVGTLGILAADQVKQVVGIESIPEAVLDAQHNVELNHVRNAEYLHGSV------ 370 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCR 330 E+ RLK+ + VDPPR+GL + + +++ P +YISCNP +L + Sbjct: 371 ---EKLLPRLKE---DGLPIDALIVDPPRTGLAKSLIKTLLRVKPASFVYISCNPSTLAQ 424 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMEC 358 DL +L + + + D P T EC Sbjct: 425 DLVLLGEAYDVRVIENVDMLPQTPRCEC 452 >gi|56751281|ref|YP_171982.1| RNA methyltransferase [Synechococcus elongatus PCC 6301] gi|56686240|dbj|BAD79462.1| probable RNA methyltransferase [Synechococcus elongatus PCC 6301] Length = 455 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 51/154 (33%), Positives = 70/154 (45%), Gaps = 19/154 (12%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L +LYCG G +L LA VL +EI SV A+ N N ++NV+ R + E A Sbjct: 313 LFDLYCGVGTLTLPLASEVGSVLGLEILPESVVQAQQNADRNGISNVEF-RAGAVEILLA 371 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA-YPH-ILYISCNPDSLCR 330 E + +DPPR G + A + +++ P I Y+SCNP +L R Sbjct: 372 QIPESP--------------DAVLLDPPRKGCEPAVIEVLRDRQPQRIAYVSCNPATLAR 417 Query: 331 DLSILSTTHTIERLAL--FDQFPYTRHMECGVLL 362 DL L L + D FP T H+E LL Sbjct: 418 DLQALCAGDRYRLLLVQPLDFFPQTAHVETVALL 451 >gi|298492165|ref|YP_003722342.1| TrmA family RNA methyltransferase ['Nostoc azollae' 0708] gi|298234083|gb|ADI65219.1| RNA methyltransferase, TrmA family ['Nostoc azollae' 0708] Length = 455 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 49/169 (28%), Positives = 79/169 (46%), Gaps = 21/169 (12%) Query: 202 VLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259 V+ + QG+ L++ YCG G +L LA+ +V+ +E+ +VE A +N N +NNV Sbjct: 300 VIQSELNFQGNEILVDAYCGIGTLTLPLAKQSHQVIGLEVQSAAVEQAIFNAQHNGINNV 359 Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH- 317 Q E+ L I + +DPPR G + + ++ P Sbjct: 360 TF---------QVGAVEKNLPNLGIIP------DIVLLDPPRKGCEANVIKSLLSLKPSR 404 Query: 318 ILYISCNPDSLCRDLSILS--TTHTIERLALFDQFPYTRHMECGVLLVR 364 I+Y++C +L RDL +L + + R+ D FP T H+E LVR Sbjct: 405 IVYVTCKVATLSRDLKLLCEHGLYKLTRVQPADFFPQTAHVESAAFLVR 453 >gi|255305404|ref|ZP_05349576.1| putative tRNA (Uracil-5-)-methyltransferase [Clostridium difficile ATCC 43255] Length = 451 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 56/220 (25%), Positives = 94/220 (42%), Gaps = 31/220 (14%) Query: 154 RANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD- 212 + ++ ++ RDY+ E + L ++ SF Q N E + + + GD Sbjct: 255 QCDELRVLYGRDYIQEEIL----GLKFKISPFSFFQTNT----KGAEVLYSIARDFIGDY 306 Query: 213 ----LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268 + +LY G G+ V+A +V +EI + +V AA N N + N + + + Sbjct: 307 NDKVVFDLYSGTGSIGQVMAGAAKKVYGIEIVEEAVVAANENAKLNGLTNCEFIAGDVAK 366 Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPD 326 + ++ + + I VDPPR G+ + + + I+YISCNP Sbjct: 367 VVKDLKDKPDL---------------IIVDPPRPGIHKDAIRDICGFGAKEIVYISCNPK 411 Query: 327 SLCRDL-SILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 SL DL + I+ + D FP T H+E LL RK Sbjct: 412 SLVVDLVDFKGYGYEIKMVKCMDMFPNTPHVETVALLRRK 451 >gi|329940064|ref|ZP_08289346.1| tRNA methyltransferase [Streptomyces griseoaurantiacus M045] gi|329300890|gb|EGG44786.1| tRNA methyltransferase [Streptomyces griseoaurantiacus M045] Length = 433 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 51/160 (31%), Positives = 77/160 (48%), Gaps = 23/160 (14%) Query: 210 QGDL-LELYCGNGNFSLVLARHFDR---VLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265 +GD L+LYCG G F+ LA VL +E K +VE AR+N+A VR+ Sbjct: 283 KGDTALDLYCGVGLFAGALADRVGEKGAVLGIESGKRAVEDARHNLA-----EFDRVRIE 337 Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISC 323 + A+ R + + D+ + +DPPR+G TV + I Y++C Sbjct: 338 QGKVEAALPR----TGITEADL-------VVLDPPRAGAGRKTVAHLTTLGARRIAYVAC 386 Query: 324 NPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLL 362 +P +L RDL+ + + L FD FP T H+EC +L Sbjct: 387 DPAALARDLAYFREGGYRVRSLRAFDLFPMTHHVECVAVL 426 >gi|257875474|ref|ZP_05655127.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus casseliflavus EC20] gi|257809640|gb|EEV38460.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus casseliflavus EC20] Length = 458 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 46/155 (29%), Positives = 72/155 (46%), Gaps = 14/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G L +A + V ++I ++E A+ N N +++E Sbjct: 316 VVDAYCGVGTIGLSVAPYAKEVRGMDIIPQAIENAQENARRIGAQNTHYETGTTEELL-- 373 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCR 330 + FN ++ +I VDPPR+GLD+ + + P ++YISCN +L R Sbjct: 374 ---PKWFN-------EGFKPDSIIVDPPRTGLDERLLQALLKQPPKKMVYISCNVSTLAR 423 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 DL L+ +E L D FP T E V L RK Sbjct: 424 DLVQLAKVFHVEYLQSVDMFPQTARCEVVVKLTRK 458 >gi|257454008|ref|ZP_05619282.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enhydrobacter aerosaccus SK60] gi|257448486|gb|EEV23455.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enhydrobacter aerosaccus SK60] Length = 503 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 52/180 (28%), Positives = 85/180 (47%), Gaps = 23/180 (12%) Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDR---VLAVEIAKP 242 FTQ N +N M + + + G+ +L+L+CG GNFSL LAR V+ VE + Sbjct: 332 FTQVNLSVNRKMTKLAIDLLELKPGERVLDLFCGLGNFSLPLARQVGETGFVIGVEGSSE 391 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY--RFKTIFVDPP 300 + A+ N AN +++ F Q + KD + + + +DPP Sbjct: 392 MTQRAKMNATANGLHHTDF-------FAQDL--------TKDFSAEPWVGQVDALLIDPP 436 Query: 301 RSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSI-LSTTHTIERLALFDQFPYTRHMEC 358 RSG + + + I+Y+SCNP +L RD ++ L + + + D FP+T H+E Sbjct: 437 RSGALEVMQYLDKFNAKRIVYVSCNPITLARDTAVLLDKGYKLTHAGVMDMFPHTGHVES 496 >gi|329121754|ref|ZP_08250371.1| 23S rRNA (uracil-5-)-methyltransferase [Dialister micraerophilus DSM 19965] gi|327468224|gb|EGF13710.1| 23S rRNA (uracil-5-)-methyltransferase [Dialister micraerophilus DSM 19965] Length = 648 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 43/161 (26%), Positives = 79/161 (49%), Gaps = 17/161 (10%) Query: 209 IQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266 + GD +++ YCG G SL LA+ V+ +EI K ++E A+ N N + NV+ Sbjct: 303 LSGDETVIDAYCGTGTISLYLAQKAKHVIGIEIIKDAIENAKENAKRNKIKNVEFHAADV 362 Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYPH-ILYISCN 324 ++ + ++ + + + +DP R+G D+ + + + P I+Y+SCN Sbjct: 363 AKYLPELAKK------------GIKAEVVVLDPVRAGCDEKVIEAIGKINPERIVYVSCN 410 Query: 325 PDSLCRDLSILSTT-HTIERLALFDQFPYTRHMECGVLLVR 364 + RD+ LS + + ++ D FP T H+E LL + Sbjct: 411 VATQARDIERLSKKGYKLIKIQPIDMFPQTTHVETVALLYK 451 >gi|317482482|ref|ZP_07941499.1| (uracil-5)-methyltransferase [Bifidobacterium sp. 12_1_47BFAA] gi|316916142|gb|EFV37547.1| (uracil-5)-methyltransferase [Bifidobacterium sp. 12_1_47BFAA] Length = 422 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 56/208 (26%), Positives = 98/208 (47%), Gaps = 25/208 (12%) Query: 169 ERLTVAGRTLIYRQIENSF----TQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNF 223 E++T+ G T Y+ N F Q + H++ V + ++ +LY G+G F Sbjct: 228 EQVTINGTTFDYQVDANGFWQVHRQAPIALGTHVINLVNGQLQSAADAVIWDLYSGSGLF 287 Query: 224 SLVLARHFD---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 +L LA R+L+VE A+ +V+ A+ N+ A ++N+V R + + Sbjct: 288 TLPLATMTGERTRMLSVEGARVAVKNAQRNLRAMNLNDVDA-------------RAGDVS 334 Query: 281 RLKD-IDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSIL-S 336 R D + H + + +DPPR+G + A ++YI+C+P SL RD + L Sbjct: 335 RTLDHVPAHLAKPNVVVLDPPRAGARAKVCRQIAAAGASSVVYIACDPTSLARDTATLIG 394 Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVR 364 + ++ + FD +P T H+E L R Sbjct: 395 EGYELKDIRAFDIYPMTHHVETVALFTR 422 >gi|291516726|emb|CBK70342.1| 23S rRNA m(5)U-1939 methyltransferase [Bifidobacterium longum subsp. longum F8] Length = 423 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 56/208 (26%), Positives = 98/208 (47%), Gaps = 25/208 (12%) Query: 169 ERLTVAGRTLIYRQIENSF----TQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNF 223 E++T+ G T Y+ N F Q + H++ V + ++ +LY G+G F Sbjct: 229 EQVTINGTTFDYQVDANGFWQVHRQAPIALGTHVINLVNGQLQSAADAVIWDLYSGSGLF 288 Query: 224 SLVLARHFD---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 +L LA R+L+VE A+ +V+ A+ N+ A ++N+V R + + Sbjct: 289 TLPLATMTGERTRMLSVEGARVAVKNAQRNLRAMNLNDVDA-------------RAGDVS 335 Query: 281 RLKD-IDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSIL-S 336 R D + H + + +DPPR+G + A ++YI+C+P SL RD + L Sbjct: 336 RTLDHVPAHLAKPNVVVLDPPRAGARAKVCRQIAAAGASSVVYIACDPTSLARDTATLIG 395 Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVR 364 + ++ + FD +P T H+E L R Sbjct: 396 EGYELKDIRAFDIYPMTHHVETVALFTR 423 >gi|257865847|ref|ZP_05645500.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus casseliflavus EC30] gi|257872181|ref|ZP_05651834.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus casseliflavus EC10] gi|257799781|gb|EEV28833.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus casseliflavus EC30] gi|257806345|gb|EEV35167.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus casseliflavus EC10] Length = 458 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 46/155 (29%), Positives = 72/155 (46%), Gaps = 14/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G L +A + V ++I ++E A+ N N +++E Sbjct: 316 VVDAYCGVGTIGLSVAPYAKEVRGMDIIPQAIENAQENARRIGAQNTHYETGTAEELL-- 373 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCR 330 + FN ++ +I VDPPR+GLD+ + + P ++YISCN +L R Sbjct: 374 ---PKWFN-------EGFKPDSIIVDPPRTGLDERLLQALLKQPPKKMVYISCNVSTLAR 423 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 DL L+ +E L D FP T E V L RK Sbjct: 424 DLVQLAKVFHVEYLQSVDMFPQTARCEVVVKLTRK 458 >gi|257094638|ref|YP_003168279.1| TrmA family RNA methyltransferase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257047162|gb|ACV36350.1| RNA methyltransferase, TrmA family [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 437 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 70/263 (26%), Positives = 115/263 (43%), Gaps = 20/263 (7%) Query: 100 LRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTK 159 +R +L QI+ + A+V I L DA E +R H + +Q G A + Sbjct: 177 IRDRLPQIEVAVGERMTALVLRILESL--DAADEVLLRDFADRHQVVFYLQPQGPATAYR 234 Query: 160 IC-LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELY 217 C +D + L + E FTQ N IN ++ L+ G+ + +++ Sbjct: 235 FCPVDGPRLSYLLPDFAVEHFFSPTE--FTQVNHAINRVLVRRALSLLDPRPGERIADMF 292 Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277 CG GNF+L +AR V+ +E + V A N AN +++ R+++ FT Sbjct: 293 CGLGNFTLPIARAGASVVGIEGSAELVGRAAENATANGLHDRVEYRVANL-FTATTESIG 351 Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDLSILS 336 RF + +DPPR G + + P I+YISC+P +L RD +IL Sbjct: 352 ALG----------RFDKMLIDPPREGALELVKSLGADGPGRIVYISCSPATLARDAAILV 401 Query: 337 T--THTIERLALFDQFPYTRHME 357 + + + + + FP T H+E Sbjct: 402 SQKGYRLRGAGVVNMFPNTSHVE 424 >gi|332075642|gb|EGI86110.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae GA17545] Length = 543 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 45/155 (29%), Positives = 76/155 (49%), Gaps = 15/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ Y G G L +A+H V VE+ +VE ++ N NH++N V +++ A Sbjct: 308 VIDAYSGIGTIGLSVAKHVKEVYGVEVIPEAVENSKKNAQLNHISNTHYVCDTAE---NA 364 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCR 330 M+ N LK+ + I VDPPR GL ++ + I YISCN ++ R Sbjct: 365 MK-----NWLKE----GIQPTVILVDPPRKGLTESFIKASSQTGADRIAYISCNVATMAR 415 Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364 D+ + + ++++ D FP T H+E LL + Sbjct: 416 DIKLYQELGYELKKVQPVDLFPQTHHVETVALLSK 450 >gi|227547632|ref|ZP_03977681.1| SAM-dependent methyltransferase [Bifidobacterium longum subsp. infantis ATCC 55813] gi|227211887|gb|EEI79783.1| SAM-dependent methyltransferase [Bifidobacterium longum subsp. infantis ATCC 55813] Length = 423 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 56/208 (26%), Positives = 98/208 (47%), Gaps = 25/208 (12%) Query: 169 ERLTVAGRTLIYRQIENSF----TQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNF 223 E++T+ G T Y+ N F Q + H++ V + ++ +LY G+G F Sbjct: 229 EQVTINGTTFDYQVDANGFWQVHRQAPIALGTHVINLVNGQLQSAADAVIWDLYSGSGLF 288 Query: 224 SLVLARHFD---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 +L LA R+L+VE A+ +V+ A+ N+ A ++N+V R + + Sbjct: 289 TLPLATMTGERTRMLSVEGARVAVKNAQRNLRAMNLNDVDA-------------RAGDVS 335 Query: 281 RLKD-IDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSIL-S 336 R D + H + + +DPPR+G + A ++YI+C+P SL RD + L Sbjct: 336 RTLDHVPAHLAKPNVVVLDPPRAGARAKVCRQIAAAGASSVVYIACDPTSLARDTATLIG 395 Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVR 364 + ++ + FD +P T H+E L R Sbjct: 396 EGYELKDIRAFDIYPMTHHVETVALFTR 423 >gi|227432946|ref|ZP_03914888.1| tRNA (uracil-5-)-methyltransferase [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227351292|gb|EEJ41576.1| tRNA (uracil-5-)-methyltransferase [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 498 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 58/205 (28%), Positives = 93/205 (45%), Gaps = 19/205 (9%) Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGN 222 +DY++E+ V G+T ++ +F Q N + LAA D L++ Y G G Sbjct: 308 KDYIEEK--VLGKT--FQLSPRAFMQLNHTQMSVVYNQALAALDLTHADKLVDAYAGVGT 363 Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282 L LA V +EI +V+ A N NH++N ++++ + E Sbjct: 364 IGLSLADKAGEVRGMEIIPEAVDDANQNATLNHISNAHYEVGTAEKLFPKWQSE------ 417 Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDA-TVGMVQAYPH-ILYISCNPDSLCRDLSILSTTHT 340 + + VDPPR+GLD A +++ P +YISCN +L RDL LS + Sbjct: 418 ------GWIADALVVDPPRTGLDTALRREILRTQPEKFVYISCNASTLARDLVDLSKAYK 471 Query: 341 IERLALFDQFPYTRHMECGVLLVRK 365 ++ + D FP T E V L ++ Sbjct: 472 VDYIQSIDMFPQTARWEGVVKLTKR 496 >gi|256842705|ref|ZP_05548193.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus crispatus 125-2-CHN] gi|293380255|ref|ZP_06626333.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus crispatus 214-1] gi|256614125|gb|EEU19326.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus crispatus 125-2-CHN] gi|290923164|gb|EFE00089.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus crispatus 214-1] Length = 462 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 40/153 (26%), Positives = 73/153 (47%), Gaps = 14/153 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L++ Y G G ++ A +V+ +E +V+ A++N+ NH+ N ++ S ++ Sbjct: 317 LIDAYSGVGTLGILAADRVKQVVGIETIPEAVKDAQHNVELNHIKNADYIQGSVEKI--- 373 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330 L ++ + VDPPR+GL + + +++ P +YISCNP +L + Sbjct: 374 ---------LPELQNSGVAINALIVDPPRTGLAKSLIKTLLRVKPETFVYISCNPSTLAQ 424 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363 DL +LS + + + D P T E LV Sbjct: 425 DLVLLSEAYDVRVIQNVDMLPQTPRCEAIAKLV 457 >gi|239928435|ref|ZP_04685388.1| RNA methyltransferase [Streptomyces ghanaensis ATCC 14672] Length = 432 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 62/206 (30%), Positives = 100/206 (48%), Gaps = 27/206 (13%) Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGN 222 R +V ER GRT +R F Q + ++ V+ +GD L+LYCG G Sbjct: 240 RPFVRERAD--GRT--HRVGGGGFWQVHPQAADTLVTAVMQGLLPRKGDTALDLYCGVGL 295 Query: 223 FSLVLA-RHFDR--VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279 F+ LA R D+ VL +E + +VE AR+N+A + VR+ + + R Sbjct: 296 FAGALADRVGDQGAVLGIESGRRAVEDARHNLA-----DFPRVRIEQGKVESVLPR---- 346 Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSIL-S 336 + ++D+ + +DPPR+G TV + + I Y++C+P +L RDL+ Sbjct: 347 TGITEVDL-------VVLDPPRAGAGRKTVEHLSSLGARRIAYVACDPAALARDLAYFRD 399 Query: 337 TTHTIERLALFDQFPYTRHMECGVLL 362 + + L +FD FP T H+EC +L Sbjct: 400 GGYRVRTLRVFDLFPMTHHVECVAIL 425 >gi|225388129|ref|ZP_03757853.1| hypothetical protein CLOSTASPAR_01864 [Clostridium asparagiforme DSM 15981] gi|225045790|gb|EEG56036.1| hypothetical protein CLOSTASPAR_01864 [Clostridium asparagiforme DSM 15981] Length = 452 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 52/191 (27%), Positives = 87/191 (45%), Gaps = 21/191 (10%) Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAV 237 +R SF Q N + +L G+ G +L+ YCG G L+ +R V+ V Sbjct: 267 FRISSKSFYQVNP-VQTEVLYGKALELAGLTGKETVLDAYCGIGTIGLIASRKASSVIGV 325 Query: 238 EIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFV 297 E+ + +V+ A N N + N K + +F L D+ + + + Sbjct: 326 ELNRDAVKDAVNNAKINGITNAKFYCNDAGKF------------LVDMAERGDKVDLVIM 373 Query: 298 DPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTT--HTIERLALFDQFPYT 353 DPPRSG + + V ++Y+SCNP++L RDL ++ +E + D F T Sbjct: 374 DPPRSGSTEEFMESVARMGVEKVVYVSCNPETLGRDLRVMKKLGYGAVEGWGV-DMFAGT 432 Query: 354 RHMECGVLLVR 364 RH+E V+++R Sbjct: 433 RHVES-VIMMR 442 >gi|218440243|ref|YP_002378572.1| RNA methyltransferase, TrmA family [Cyanothece sp. PCC 7424] gi|218172971|gb|ACK71704.1| RNA methyltransferase, TrmA family [Cyanothece sp. PCC 7424] Length = 460 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 49/173 (28%), Positives = 84/173 (48%), Gaps = 24/173 (13%) Query: 194 INVHMLEWVLAA---TKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248 IN E +L T ++G+ L++ YCG G F+L LA+ R + +E+ + S A+ Sbjct: 290 INTQAAEILLGVIFDTLELKGNETLIDAYCGIGTFTLPLAQRVGRAIGIEVYRSSTIQAQ 349 Query: 249 YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDAT 308 N N + NV + + + + + + DI I +DPPR G D Sbjct: 350 ENAKLNRLLNVSFIPGAVETVLP------QLDLIPDI---------ILLDPPRKGCDKTV 394 Query: 309 V-GMVQAYP-HILYISCNPDSLCRDLSILST--THTIERLALFDQFPYTRHME 357 + +++ P ++YISC P +L RDL +L + ++ + + D FP T H+E Sbjct: 395 IETLLKLKPSRLVYISCQPATLARDLKLLCSDGSYNLTGVQPVDFFPQTSHVE 447 >gi|262038996|ref|ZP_06012331.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Leptotrichia goodfellowii F0264] gi|261746988|gb|EEY34492.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Leptotrichia goodfellowii F0264] Length = 483 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 38/155 (24%), Positives = 77/155 (49%), Gaps = 15/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + +L+ G G ++++ +V +E+ + +V+ A N++ N + + Sbjct: 338 VFDLFSGTGTIGQIVSKKAKQVYGIELIEEAVKKANETAKFNNIKNAEFIAGDV------ 391 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330 F +L +++ + I +DPPR G+ + T+ + Y +I+Y+SCNP +L + Sbjct: 392 ------FEKLDELEERDVKPDIIILDPPRPGVGEKTITKLLKYNVSNIIYVSCNPKTLAQ 445 Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364 DL+I + + + + D FP T H+E LLV+ Sbjct: 446 DLAIFHNNGYRLVKSCPVDMFPQTPHVEVVNLLVK 480 >gi|257783863|ref|YP_003179080.1| RNA methyltransferase, TrmA family [Atopobium parvulum DSM 20469] gi|257472370|gb|ACV50489.1| RNA methyltransferase, TrmA family [Atopobium parvulum DSM 20469] Length = 415 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 48/161 (29%), Positives = 74/161 (45%), Gaps = 22/161 (13%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI------AANHVNNVKIVRMSS 266 +L+ YCG G L LA H V + V+ NI A N+ + + + Sbjct: 266 ILDAYCGTGTIGLCLA-HVAEAQGVNLLLTGVDQVENNIQMARRNARNNKLEAEFICDDA 324 Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCN 324 + QA+ ++ + F I +DPPR+G A + A I+Y+SCN Sbjct: 325 TRYMQALAKDGQ------------NFDVIILDPPRAGSTPAFLKATAQLAQKKIVYVSCN 372 Query: 325 PDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364 + RDL +L + IER+ D FP+T+H+EC V+L R Sbjct: 373 VVTQARDLKVLLDSGFAIERVTPVDMFPHTKHVECVVVLSR 413 >gi|297485088|ref|XP_002694704.1| PREDICTED: HpaII tiny fragments locus 9C [Bos taurus] gi|296478319|gb|DAA20434.1| HpaII tiny fragments locus 9C [Bos taurus] Length = 610 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 51/164 (31%), Positives = 77/164 (46%), Gaps = 23/164 (14%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +L++ CG G L LAR RV+ VE+++ +VE AR N N ++NV+ ++E A Sbjct: 421 VLDVCCGTGTIGLALARKVKRVVGVELSQEAVEDARVNALDNELSNVEFHCGRAEELVPA 480 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHI---LYISCNPDS-- 327 + +RL + +DPPR+GL V V+ ++ LY+SCNP + Sbjct: 481 L-----VSRLASQQL------VAILDPPRAGLHSKAVLAVRRAENVRRLLYVSCNPRAAM 529 Query: 328 -----LCRDLS--ILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 LCR S + T + D FP T H E +L R Sbjct: 530 GNFVDLCRAPSNRVKGTPFRPVKAVAVDLFPQTLHCEMLILFER 573 >gi|322689432|ref|YP_004209166.1| methyltransferase [Bifidobacterium longum subsp. infantis 157F] gi|320460768|dbj|BAJ71388.1| putative methyltransferase [Bifidobacterium longum subsp. infantis 157F] Length = 422 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 56/208 (26%), Positives = 98/208 (47%), Gaps = 25/208 (12%) Query: 169 ERLTVAGRTLIYRQIENSF----TQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNF 223 E++T+ G T Y+ N F Q + H++ V + ++ +LY G+G F Sbjct: 228 EQVTINGTTFDYQVDANGFWQVHRQAPIALGTHVINLVNGQLQSAADAVIWDLYSGSGLF 287 Query: 224 SLVLAR---HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 +L LA R+L+VE A+ +V+ A+ N+ A ++N+V R + + Sbjct: 288 TLPLATMTGERTRMLSVEGARVAVKNAQRNLRAMNLNDVDA-------------RAGDVS 334 Query: 281 RLKD-IDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSIL-S 336 R D + H + + +DPPR+G + A ++YI+C+P SL RD + L Sbjct: 335 RTLDHVPAHLAKPNVVVLDPPRAGARAKVCRQIAAAGASSVVYIACDPTSLARDTATLIG 394 Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVR 364 + ++ + FD +P T H+E L R Sbjct: 395 EGYELKDIRAFDIYPMTHHVETVALFTR 422 >gi|299782720|gb|ADJ40718.1| 23S rRNA (Uracil-5-)-methyltransferase RumA [Lactobacillus fermentum CECT 5716] Length = 312 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 59/212 (27%), Positives = 91/212 (42%), Gaps = 19/212 (8%) Query: 155 ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-L 213 ++T + +DY+ E L L +R SF Q N + E A + D L Sbjct: 113 GDETTLLYGQDYITESL----MGLDFRLSARSFLQLNPEQTEVLYEEAAKALDLSKDDTL 168 Query: 214 LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273 ++ Y G G L LA +V+ +E +V+ A N N V N + ++E Sbjct: 169 IDAYAGIGTIGLSLANRVKQVIGMETIADAVQDANNNATLNGVTNARYEVGPAEELLPKW 228 Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYP-HILYISCNPDSLCRD 331 R + + F + VDPPR+GLD+A + + Q P Y+SCN +L R+ Sbjct: 229 RSQGQ------------HFDALVVDPPRTGLDNALIDTILQEKPAKFAYVSCNMATLARN 276 Query: 332 LSILSTTHTIERLALFDQFPYTRHMECGVLLV 363 L+ L T+ + + D P T E V LV Sbjct: 277 LARLVPTYRVAYIQPVDMLPQTPRCEAVVKLV 308 >gi|298346906|ref|YP_003719593.1| TrmA family tRNA (uracil-5-)-methyltransferase [Mobiluncus curtisii ATCC 43063] gi|298236967|gb|ADI68099.1| TrmA family tRNA (uracil-5-)-methyltransferase [Mobiluncus curtisii ATCC 43063] Length = 504 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 59/205 (28%), Positives = 94/205 (45%), Gaps = 16/205 (7%) Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSL 225 V E + V T YR SF Q + + + A I+G + ELY G+G FSL Sbjct: 216 VRETVHVDDLTFTYRIFSGSFWQTDRRAPAILAAALRDALGQIEGFEAWELYSGSGLFSL 275 Query: 226 VLARHFD---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282 LA+ R+ VE P+ ++A YN+A + V++ R + + + R + Sbjct: 276 FLAQGLGAKGRLTTVEGDGPATKSAAYNLAKAGFDQVEVRR---GDVSPQLLRSLPMGEM 332 Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA-YPHILYI-SCNPDSLCRDLSIL-STTH 339 + + DPPR GL A + A +P ++ + SC+P S RDL + + Sbjct: 333 VS------QGTLVVADPPRLGLGKAVARAICAQHPDLVALFSCDPVSCARDLETMRQLGY 386 Query: 340 TIERLALFDQFPYTRHMECGVLLVR 364 ++ +FD FPYT H+E LL + Sbjct: 387 RVKTWRVFDLFPYTSHVETVALLSK 411 >gi|297461681|ref|XP_002701792.1| PREDICTED: HpaII tiny fragments locus 9C [Bos taurus] Length = 606 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 51/164 (31%), Positives = 77/164 (46%), Gaps = 23/164 (14%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +L++ CG G L LAR RV+ VE+++ +VE AR N N ++NV+ ++E A Sbjct: 417 VLDVCCGTGTIGLALARKVKRVVGVELSQEAVEDARVNALDNELSNVEFHCGRAEELVPA 476 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHI---LYISCNPDS-- 327 + +RL + +DPPR+GL V V+ ++ LY+SCNP + Sbjct: 477 L-----VSRLASQQL------VAILDPPRAGLHSKAVLAVRRAENVRRLLYVSCNPRAAM 525 Query: 328 -----LCRDLS--ILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 LCR S + T + D FP T H E +L R Sbjct: 526 GNFVDLCRAPSNRVKGTPFRPVKAVAVDLFPQTLHCEMLILFER 569 >gi|329930050|ref|ZP_08283675.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Paenibacillus sp. HGF5] gi|328935449|gb|EGG31921.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Paenibacillus sp. HGF5] Length = 532 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 55/184 (29%), Positives = 82/184 (44%), Gaps = 19/184 (10%) Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 +F Q N V + E V AA G+ G +++ YCG G L LA + V +E + Sbjct: 360 AFFQLNPQQTVKLYESVRAAA-GLTGKETVIDAYCGTGTIGLWLAPYAKEVRGIETIPEA 418 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 VE A+ N N N ++E +E + I DPPR+G Sbjct: 419 VEDAKANAQRNGRANASFHVGQAEELLPRWVKE------------GMKPDVIIADPPRTG 466 Query: 304 LDDATVGMV-QAYPH-ILYISCNPDSLCRDLSI-LSTTHTIERLALFDQFPYTRHMECGV 360 LD + V + P +Y+SCNP +L +D + L + +E D FP T H+E V Sbjct: 467 LDPRFLETVLRTKPKRFVYVSCNPSTLAKDCKVLLDGGYELEWAQPVDMFPQTSHVEA-V 525 Query: 361 LLVR 364 LL++ Sbjct: 526 LLMK 529 >gi|322691399|ref|YP_004220969.1| methyltransferase [Bifidobacterium longum subsp. longum JCM 1217] gi|320456255|dbj|BAJ66877.1| putative methyltransferase [Bifidobacterium longum subsp. longum JCM 1217] Length = 422 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 56/208 (26%), Positives = 98/208 (47%), Gaps = 25/208 (12%) Query: 169 ERLTVAGRTLIYRQIENSF----TQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNF 223 E++T+ G T Y+ N F Q + H++ V + ++ +LY G+G F Sbjct: 228 EQVTINGTTFDYQVDANGFWQVHRQAPIALGTHVINLVNGQLQSAADAVIWDLYSGSGLF 287 Query: 224 SLVLARHFD---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 +L LA R+L+VE A+ +V+ A+ N+ A ++N+V R + + Sbjct: 288 TLPLATMTGERTRMLSVEGARVAVKNAQRNLRAMNLNDVDA-------------RAGDVS 334 Query: 281 RLKD-IDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSIL-S 336 R D + H + + +DPPR+G + A ++YI+C+P SL RD + L Sbjct: 335 RTLDHVPAHLAKPNVVVLDPPRAGARAKVCRQIAAAGASSVVYIACDPTSLARDTATLIG 394 Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVR 364 + ++ + FD +P T H+E L R Sbjct: 395 EGYELKDIRAFDIYPMTHHVETVALFTR 422 >gi|326693283|ref|ZP_08230288.1| 23S rRNA (uracil-5-)-methyltransferase [Leuconostoc argentinum KCTC 3773] Length = 458 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 55/183 (30%), Positives = 84/183 (45%), Gaps = 25/183 (13%) Query: 185 NSFTQPNAGINVHMLEWVLAATKG---IQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241 NSF Q N + + LAA K +++ Y G G + +A +VL VE+ Sbjct: 284 NSFYQVNPQTTEVLYD--LAAQKAQLQPTDTVIDAYSGIGTIGITVANRVKQVLGVEVVP 341 Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301 +V A++N+ N + N + + E + K + + + +FVDPPR Sbjct: 342 GAVADAQHNMRLNGIQNATYLLADAPE------------KFKIWEAAQLQPEVVFVDPPR 389 Query: 302 SGLDD----ATVGMVQAYPHILYISCNPDSLCRDLS-ILSTTHTIE-RLALFDQFPYTRH 355 GL ATV M ++YISCNP +L RD + I+ + IE + DQFP T H Sbjct: 390 RGLTSELIQATVDM--GPERLVYISCNPVTLARDAAEIVQKGYQIEGPVQPVDQFPQTSH 447 Query: 356 MEC 358 +E Sbjct: 448 VES 450 >gi|320527423|ref|ZP_08028604.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Solobacterium moorei F0204] gi|320132136|gb|EFW24685.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Solobacterium moorei F0204] Length = 377 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 95/393 (24%), Positives = 169/393 (43%), Gaps = 58/393 (14%) Query: 2 SGTLLID-QYEQQLAEKVDRLRQMMLAFQV-PNLQIFRSEPIHYRMR--AEFHIWHDGDD 57 G ID YE+QL K + +R++ + P L + +P HYR + A F + Sbjct: 11 GGCAYIDVPYEEQLKMKREEMRKIFRTKAIEPVLGM--KDPYHYRHKIYASFARDKKTNR 68 Query: 58 LYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATI-RLEPLLRAKLFQIDYLTSQSDQ 116 +Y M+++ + ++ + L+ + L E++ TI +L +R +++ D Sbjct: 69 IYAGMYEENSHRKVPSEM----CLIQHTLANEILTTICKLAESMRIEIYDEDSGRGTLRH 124 Query: 117 AIVTLIYHRLLDDAWRECAIRLR---------DALHARKYQIQLI----GRANKTKICLD 163 A + + + +D + I + +AL + QI+ I RA+ T + L Sbjct: 125 AYIRI--SKATNDVLLDIVIGSKGLPSSKNFVNALVKKFPQIKTIILNFNRAH-TSMILG 181 Query: 164 RD--------YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-L 214 +D Y+ +R+ L +R SF Q N + L+ K D+ L Sbjct: 182 KDERVLYGPGYITDRIG----GLEFRISSKSFYQVNPEQTEVLYRTALSLVKIKDTDVVL 237 Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274 + CG G SL+ A+ V+ VEI ++ A+ N N + N + + EF Q M Sbjct: 238 DACCGIGTISLLAAQSAKHVIGVEINPQAIRDAKNNAKHNKLLNTEFYAADATEFIQRM- 296 Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCRDL 332 + + + +DPPRSG+ + + Q P ++YISCNP + D+ Sbjct: 297 --------------NIKTDVVILDPPRSGMTLPFMHKLAQLSPDRVVYISCNPYTQVTDI 342 Query: 333 SILSTT-HTIERLALFDQFPYTRHMECGVLLVR 364 L + I+++ D F +T H+E VLL + Sbjct: 343 EPLKKAGYQIKKIVPVDLFGFTPHVETMVLLSK 375 >gi|154488844|ref|ZP_02029693.1| hypothetical protein BIFADO_02152 [Bifidobacterium adolescentis L2-32] gi|154082981|gb|EDN82026.1| hypothetical protein BIFADO_02152 [Bifidobacterium adolescentis L2-32] Length = 421 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 66/211 (31%), Positives = 99/211 (46%), Gaps = 26/211 (12%) Query: 169 ERLTVAGRTLIYRQIENSFTQ-----PNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGN 222 E++TV GR Y F Q P A + H++ V G L +LY G+G Sbjct: 224 EKVTVCGREFEYGVDAGGFWQMHRHAPIA-LTGHVMSLVHGELDGAASACLWDLYSGSGL 282 Query: 223 FSLVLAR---HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279 F+L LA R+L+VE K +V+ A+ N+ A H+ NV R+ T A R Sbjct: 283 FTLPLATLSAGRTRMLSVEGGKTAVKHAQRNLRAIHLGNVD-ARVGDVAKTLANVR---- 337 Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST 337 N L DI + +DPPR+G + ++YI+C+P SL RD + L++ Sbjct: 338 NDLAKPDI-------VVLDPPRAGARAKVCRQIAESGARSVVYIACDPASLARDTATLAS 390 Query: 338 -THTIERLALFDQFPYTRHMECGVLLVRKPS 367 + + + FD +P T H+E V L RK + Sbjct: 391 LGYDLADIRAFDIYPTTHHVET-VALFRKAT 420 >gi|124266449|ref|YP_001020453.1| 23S rRNA 5-methyluridine methyltransferase [Methylibium petroleiphilum PM1] gi|124259224|gb|ABM94218.1| putative 23S rRNA (uracil-5-)-methyltransferase [Methylibium petroleiphilum PM1] Length = 454 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 79/288 (27%), Positives = 124/288 (43%), Gaps = 38/288 (13%) Query: 101 RAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLR--DALHARKYQIQLIGRANKT 158 R +L QI+ ++ +VT + R L+ + RLR A H ++ +Q G Sbjct: 183 RDRLPQIEVAIGEAPDGLVTALVLRHLEPLSADDLQRLRAFGAEHGVQWWLQPKGPDTVQ 242 Query: 159 KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATK--GIQGD--LL 214 ++ + L G + ++ + FTQ N IN + V+ A + +QGD ++ Sbjct: 243 RLDDGGPQLAYTLPEYGVVMPFKPTD--FTQVNHAINRAL---VVRALRLLAVQGDERVI 297 Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274 + +CG GNF+L LA VL +E ++ V +R N A N +S K A Sbjct: 298 DWFCGLGNFTLPLATQAREVLGIEGSEALVARSRDNAALNG--------LSHKTRFDA-- 347 Query: 275 REREFNRLKDIDIHSYRFKTIF-VDPPRSG---LDDATVGMVQ---------AYPHILYI 321 R L D+ +Y T + VDPPR G L A VQ I+Y+ Sbjct: 348 --RNLFELLPADLVAYGSATKWLVDPPREGAFALAKAVADAVQDPGQAPGWVPPARIVYV 405 Query: 322 SCNPDSLCRDLSIL--STTHTIERLALFDQFPYTRHMECGVLLVRKPS 367 SCNP +L RD +L + + + FP+T H+E + R S Sbjct: 406 SCNPATLARDAGLLVHQAGYRCVQAGAVNMFPHTAHVESIAVFDRNAS 453 >gi|311977789|ref|YP_003986909.1| putative RNA methyltransferase [Acanthamoeba polyphaga mimivirus] gi|82000203|sp|Q5UQK3|YR405_MIMIV RecName: Full=Putative RNA methyltransferase R405 gi|55417024|gb|AAV50674.1| tRNA (Uracil-5-)-methyltransferase [Acanthamoeba polyphaga mimivirus] gi|308204808|gb|ADO18609.1| putative RNA methyltransferase [Acanthamoeba polyphaga mimivirus] Length = 389 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 57/222 (25%), Positives = 101/222 (45%), Gaps = 35/222 (15%) Query: 159 KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNA----GINVHMLEWVLAATKGIQGDLL 214 KI +Y+ E+L I++ + SF Q N + +LE + K D+L Sbjct: 181 KIVKGHNYIHEKL----DDYIFKITDESFFQVNTLATEVLYNKVLELTMKYIKPTGQDIL 236 Query: 215 -ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV-----RMSSKE 268 +L CG G + L++ F +V ++I + S+ A +N N++ N++ + + K Sbjct: 237 FDLCCGTGTIGIYLSKIFTKVFGIDIKQSSIIDANHNKLLNNIPNIEFICNPIENVLEKL 296 Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIF--VDPPRSGLDDATVGMVQAYP---HILYISC 323 ++ + + + T F VDPPR+G+ + P +++Y+SC Sbjct: 297 ISECLEKNPD--------------STFFAVVDPPRTGMHGGVQNTINNCPNLEYLIYVSC 342 Query: 324 NPDSLCRDLSILSTT-HTIERLALFDQFPYTRHMECGVLLVR 364 N + RD+ IL IE + L D FP+T H E V+L + Sbjct: 343 NVVTFKRDMEILGKQFEAIETICL-DLFPHTPHCELIVVLKK 383 >gi|33597587|ref|NP_885230.1| 23S rRNA 5-methyluridine methyltransferase [Bordetella parapertussis 12822] gi|33574015|emb|CAE38338.1| conserved hypothetical protein [Bordetella parapertussis] Length = 484 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 69/261 (26%), Positives = 109/261 (41%), Gaps = 38/261 (14%) Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDE---R 170 D+AIV ++ H L +R A H ++ +Q + T L+R++ D Sbjct: 208 GDEAIVLVLRHLLPLTDGDIAVLRAFAAEHGVQWWLQ--SKGPDTVHPLEREHADALAYT 265 Query: 171 LTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATK-GIQGDLLELYCGNGNFSLVLAR 229 L G + YR + FTQ N IN M+ L Q + +L+CG GNF+L LA Sbjct: 266 LPEFGLRMPYRPTD--FTQVNHAINRAMVSRALKLLDVQPQDRVADLFCGLGNFTLPLAT 323 Query: 230 HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK--DIDI 287 + VE +K + A + AA H + F L ++D+ Sbjct: 324 QGREAVGVEGSKALTDRA-HEAAARH----------------GLGERTRFATLNLFEVDV 366 Query: 288 HSYR----FKTIFVDPPRSGLDDATVGMVQAYP-----HILYISCNPDSLCRDLSIL--S 336 R F + +DPPR G + P I+Y+SCNP +L RD +I+ Sbjct: 367 QWLRGLGYFDRMLIDPPREGAQAVVQALSLLAPGERPRRIVYVSCNPGTLARDAAIMVHE 426 Query: 337 TTHTIERLALFDQFPYTRHME 357 + + + + FP+T H+E Sbjct: 427 GGYALRSAGVINMFPHTGHVE 447 >gi|23465954|ref|NP_696557.1| hypothetical protein BL1394 [Bifidobacterium longum NCC2705] gi|50401592|sp|Q8G4I8|Y1394_BIFLO RecName: Full=Uncharacterized RNA methyltransferase BL1394 gi|23326666|gb|AAN25193.1| conserved hypothetical protein with duf90 [Bifidobacterium longum NCC2705] Length = 435 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 56/208 (26%), Positives = 98/208 (47%), Gaps = 25/208 (12%) Query: 169 ERLTVAGRTLIYRQIENSF----TQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNF 223 E++T+ G T Y+ N F Q + H++ V + ++ +LY G+G F Sbjct: 241 EQVTINGTTFDYQVDANGFWQVHRQAPIALGTHVINLVNGQLQSAADAVIWDLYSGSGLF 300 Query: 224 SLVLARHFD---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 +L LA R+L+VE A+ +V+ A+ N+ A ++N+V R + + Sbjct: 301 TLPLATMTGERTRMLSVEGARVAVKNAQRNLRAMNLNDVDA-------------RAGDVS 347 Query: 281 RLKD-IDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSIL-S 336 R D + H + + +DPPR+G + A ++YI+C+P SL RD + L Sbjct: 348 RTLDHVPAHLAKPNVVVLDPPRAGARAKVCRQIAAAGASSVVYIACDPTSLARDTATLIG 407 Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVR 364 + ++ + FD +P T H+E L R Sbjct: 408 EGYELKDIRAFDIYPMTHHVETVALFTR 435 >gi|115504421|ref|XP_001219003.1| hypothetical protein [Trypanosoma brucei TREU927] gi|83642485|emb|CAJ16516.1| hypothetical protein, conserved [Trypanosoma brucei brucei strain 927/4 GUTat10.1] Length = 559 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 57/196 (29%), Positives = 86/196 (43%), Gaps = 21/196 (10%) Query: 185 NSFTQPN-AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 SF Q N AG+ + + E V A + LL+L CG G + LA+H RV+ +E+ + + Sbjct: 371 TSFFQVNTAGMELLLRETVAVAELTPETTLLDLCCGTGTIGIALAKHVKRVIGIELVESA 430 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 V AR N N V N + ++ + KDI +DPPR+G Sbjct: 431 VRDARLNAERNGVRNATFNCGRVEHLLPSVISQLSPEDRKDI--------VAILDPPRAG 482 Query: 304 LDDATVGMVQAYPHI---LYISCNPDSLCRDLSILSTTHT-------IERLALF--DQFP 351 + + ++ I +YISC +L RD L+ T +A F D FP Sbjct: 483 VTPTVLKWIRGTATIRRLVYISCEQKALQRDCPPLTKPATKAYRESPFNVVAGFAIDMFP 542 Query: 352 YTRHMECGVLLVRKPS 367 +T H+E +L R S Sbjct: 543 HTPHVEMVAVLSRSNS 558 >gi|323489809|ref|ZP_08095034.1| putative RNA methyltransferase [Planococcus donghaensis MPA1U2] gi|323396547|gb|EGA89368.1| putative RNA methyltransferase [Planococcus donghaensis MPA1U2] Length = 454 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 85/387 (21%), Positives = 165/387 (42%), Gaps = 56/387 (14%) Query: 10 YEQQLAEKVDRLRQMMLAF-QVPNLQIFRS----EPIHYRMRAEFHIWHDGDDLYHIMFD 64 Y QQL EK D + Q + + + +Q+ + +P YR +++F G + +F Sbjct: 93 YSQQLVEKRDLVVQALERYLKGTKVQVEETIGMEDPWRYRNKSQFQTRLKGSKVIAGLFA 152 Query: 65 QQTKERMRIDYFM---PGSLLINALMIEMMATIRL--------EPLLRAKLFQIDYLTSQ 113 + + + + ID + P + +I + ++ +++ + ++R + + T + Sbjct: 153 EGSHQLLDIDECIVQHPDTTVITNAVKRILEELKMPIYDGKTMKGIIRTIVVRTGVNTGE 212 Query: 114 SDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDE 169 +VT + LL + ++ L + ++ NK K L + DE Sbjct: 213 IQLVLVTTRSKIPQKELLLERLKKIDTNL----------VSIVQNINKEKTSLV--FGDE 260 Query: 170 RLTVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWVL-AATKGIQGDLLELYCGN 220 +T+ G+ I+ ++ +F Q N V + + + AA + +++ YCG Sbjct: 261 TITLFGKDTIHEELGELAFDLSARAFFQLNPTQTVKLYDEIKRAAQLTGKETVVDAYCGV 320 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G L LA V +++ SV A+ N A K V +++++ + E Sbjct: 321 GTIGLWLADSAKEVRGMDVLHESVVDAKANAKAQGYT-AKYVTGTAEKWLELWSNE---- 375 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCRDLSILSTT 338 + + VDPPR+GL D+ + +++ P +Y SCNP +L +DL L+ Sbjct: 376 --------GFVPDVLTVDPPRTGLADSLLQTILKVKPKRFVYTSCNPSTLAKDLQQLTKI 427 Query: 339 HTIERLALFDQFPYTRHMECGVLLVRK 365 + IE + D FP T +E LV K Sbjct: 428 YRIEYIQPVDMFPQTAQVESVTKLVLK 454 >gi|57234195|ref|YP_181780.1| RNA methyltransferase [Dehalococcoides ethenogenes 195] gi|57224643|gb|AAW39700.1| RNA methyltransferase, TrmA family [Dehalococcoides ethenogenes 195] Length = 395 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 40/155 (25%), Positives = 82/155 (52%), Gaps = 20/155 (12%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L++ Y G G F+++L+ +RV+A+E + +++ AR NIA ++N+++++ +++ Sbjct: 254 LVDAYAGVGTFAVLLSPDCNRVIAIEESAAAIKDARLNIAG--IDNIELIQSKTEDVISQ 311 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCR 330 + + + + +DP RSG + + + P +++Y++C+P SL R Sbjct: 312 FQGQMD---------------ALILDPSRSGAHPSVLASICQNPPRNLVYVACDPSSLAR 356 Query: 331 DLSI-LSTTHTIERLALFDQFPYTRHMECGVLLVR 364 DL I L + ++ D FP T H+E L+ R Sbjct: 357 DLKILLGGPFELSQVIPVDMFPQTYHVETVCLMSR 391 >gi|83719402|ref|YP_442750.1| 23S rRNA 5-methyluridine methyltransferase [Burkholderia thailandensis E264] gi|83653227|gb|ABC37290.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia thailandensis E264] Length = 498 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 56/190 (29%), Positives = 83/190 (43%), Gaps = 24/190 (12%) Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 FTQ N IN ++ L +GD +L+L+CG GNF+L LAR V+ +E ++ Sbjct: 320 FTQVNHQINRVLVGRALRLLAPERGDRVLDLFCGIGNFTLPLARLAREVVGIEGSETLTS 379 Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY-RFKTIFVDPPRSG- 303 A N N V+ F R + D+H+ F VDPPR G Sbjct: 380 RALANAKENGVDG-------HTSFAS-----RNLFEVTADDLHALGAFDKFLVDPPREGA 427 Query: 304 -------LDDATVGMVQAYPHILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTR 354 + A G I+Y+SCNP +L RD +L + ++ + + FP+T Sbjct: 428 LAVSKALAEIAQSGEGPLPARIVYVSCNPSTLARDAGLLVHEAGYRLKGAGVVNMFPHTS 487 Query: 355 HMECGVLLVR 364 H+E L R Sbjct: 488 HVESIALFER 497 >gi|307257165|ref|ZP_07538937.1| 23S rRNA (uracil-5-)-methyltransferase rumB [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306864327|gb|EFM96238.1| 23S rRNA (uracil-5-)-methyltransferase rumB [Actinobacillus pleuropneumoniae serovar 10 str. D13039] Length = 391 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 42/159 (26%), Positives = 78/159 (49%), Gaps = 23/159 (14%) Query: 215 ELYCGNGNFSLVLARHFD------RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268 +L+CG G F L A+ ++ +EI+ ++ +A + A + NV + S + Sbjct: 247 DLFCGVGGFGLHCAKALQEKNENVQLTGIEISASAIASATQSAAQLQLKNVTFASLDSAQ 306 Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPD 326 F A+ ++ K D+ + V+PPR G+ + P+++Y SCN Sbjct: 307 F--ALN-----DKGKSPDL-------VIVNPPRRGIGKPLAEFLNELGTPYLIYSSCNAQ 352 Query: 327 SLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 ++ +D LS ++++++ LFD FP+T H E LV+K Sbjct: 353 TMAKDFEALSN-YSLQKVQLFDMFPHTSHYEVLTFLVKK 390 >gi|295692497|ref|YP_003601107.1| RNA methyltransferase [Lactobacillus crispatus ST1] gi|295030603|emb|CBL50082.1| RNA methyltransferase [Lactobacillus crispatus ST1] Length = 462 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 41/156 (26%), Positives = 76/156 (48%), Gaps = 15/156 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L++ Y G G ++ A +V+ +E +V+ A++N+ NH+ N ++ S ++ Sbjct: 317 LIDAYSGVGTLGILAADRVKQVVGIETIPEAVKDAQHNVELNHIKNADYIQGSVEKV--- 373 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330 L ++ + VDPPR+GL + + +++ P +YISCNP +L + Sbjct: 374 ---------LPELQNSGVAINALIVDPPRTGLAKSLIKTLLRVKPETFVYISCNPSTLAQ 424 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMEC-GVLLVRK 365 DL +LS + + + D P T E L++RK Sbjct: 425 DLVLLSEAYDVRVIQNVDMLPQTPRCEAIAKLVLRK 460 >gi|312132559|ref|YP_003999898.1| trma [Bifidobacterium longum subsp. longum BBMN68] gi|311773496|gb|ADQ02984.1| TrmA [Bifidobacterium longum subsp. longum BBMN68] Length = 422 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 56/208 (26%), Positives = 98/208 (47%), Gaps = 25/208 (12%) Query: 169 ERLTVAGRTLIYRQIENSF----TQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNF 223 E++T+ G T Y+ N F Q + H++ V + ++ +LY G+G F Sbjct: 228 EQVTINGTTFDYQVDANGFWQVHRQAPIALGTHVINLVNGQLQSAADAVIWDLYSGSGLF 287 Query: 224 SLVLARHFD---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 +L LA R+L+VE A+ +V+ A+ N+ A ++N+V R + + Sbjct: 288 TLPLATMTGERTRMLSVEGARVAVKNAQRNLRAMNLNDVDA-------------RAGDVS 334 Query: 281 RLKD-IDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSIL-S 336 R D + H + + +DPPR+G + A ++YI+C+P SL RD + L Sbjct: 335 RTLDHVPAHLAKPNVVVLDPPRAGARAKVCRQIAAAGASSVVYIACDPTSLARDTATLIG 394 Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVR 364 + ++ + FD +P T H+E L R Sbjct: 395 EGYELKDIRAFDIYPMTHHVETVALFTR 422 >gi|291543770|emb|CBL16879.1| 23S rRNA m(5)U-1939 methyltransferase [Ruminococcus sp. 18P13] Length = 451 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 50/159 (31%), Positives = 70/159 (44%), Gaps = 19/159 (11%) Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK--IVRMSSKEF 269 LL+LYCG G L +A + VE+ +VE A N N + N + + Sbjct: 306 SLLDLYCGTGTIGLSMADGVKHLTGVEVIPQAVENAIRNARENRIENADFHVGDAAQWAQ 365 Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDS 327 A R E I +DPPR G D T+ V A I+ ISCNP + Sbjct: 366 QLAQRGEHP--------------DVIVLDPPRKGCDAQTLEAVCRMAPQRIVMISCNPAT 411 Query: 328 LCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRK 365 RD ++L + +++ D FP T H+EC VL+ RK Sbjct: 412 AARDCALLDKMGYHAQKVQAVDLFPRTGHVECVVLMSRK 450 >gi|225871008|ref|YP_002746955.1| RNA methyltransferase [Streptococcus equi subsp. equi 4047] gi|225700412|emb|CAW94786.1| putative RNA methyltransferase [Streptococcus equi subsp. equi 4047] Length = 455 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 85/385 (22%), Positives = 153/385 (39%), Gaps = 52/385 (13%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFR-------SEPIHYRMRAEFHIWHDGDDLYHIM 62 Y +QL K D +RQ + F+ + F +EP HYR + +F G + + Sbjct: 89 YPKQLYFKDDIIRQALKKFKPKGYEEFEIRHTLGMAEPQHYRAKLQFQTRSFGGSVKAGL 148 Query: 63 FDQQTKERMRIDYFMPGSLLINALMIEM----------------MATIRLEPLLRAKL-- 104 F + + + ID + L A++ + +A IR + RA+ Sbjct: 149 FSEGSHCLVAIDDCLVQDQLTQAIVNHVTQLLDRYRIPIYNERRVAGIRTVMVRRAQASD 208 Query: 105 -FQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD 163 Q+ +++S+ + + R A+ + + + Y KT+I Sbjct: 209 QVQLIFVSSKEVRLAGLIAELTAAFPQIRTVALNINTSKTSDIY-------GAKTEILWG 261 Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGN 222 ++ + E + L R +F Q N + V+ A + + +++ YCG G+ Sbjct: 262 QETIQEEVLSHSFALSPR----AFYQLNPTQTEVLYSQVVQALEPTAEEHIIDAYCGVGS 317 Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282 L +A V ++I ++ AR N A +N ++E + E Sbjct: 318 IGLAVANKVRSVRGMDIIPEAIADARKNAQALGFDNAYYETGKAEELIPSWYAE------ 371 Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTTHT 340 YR + VDPPR+GLDD + + Y ++Y+SCN +L RDL L + Sbjct: 372 ------GYRADALIVDPPRTGLDDKLLQTILHYQPAKMVYVSCNTSTLARDLVPLVQVYD 425 Query: 341 IERLALFDQFPYTRHMECGVLLVRK 365 + + D FP+T E V L ++ Sbjct: 426 VIYIQSVDMFPHTARTEAVVKLQKR 450 >gi|239621237|ref|ZP_04664268.1| conserved hypothetical protein [Bifidobacterium longum subsp. infantis CCUG 52486] gi|239515698|gb|EEQ55565.1| conserved hypothetical protein [Bifidobacterium longum subsp. infantis CCUG 52486] Length = 422 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 56/208 (26%), Positives = 98/208 (47%), Gaps = 25/208 (12%) Query: 169 ERLTVAGRTLIYRQIENSF----TQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNF 223 E++T+ G T Y+ N F Q + H++ V + ++ +LY G+G F Sbjct: 228 EQVTINGTTFDYQVDANGFWQVHRQAPIALGTHVINLVNGQLQSAADAVIWDLYSGSGLF 287 Query: 224 SLVLARHFD---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 +L LA R+L+VE A+ +V+ A+ N+ A ++N+V R + + Sbjct: 288 TLPLATMTGERTRMLSVEGARVAVKNAQRNLRAMNLNDVDA-------------RAGDVS 334 Query: 281 RLKD-IDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSIL-S 336 R D + H + + +DPPR+G + A ++YI+C+P SL RD + L Sbjct: 335 RTLDHVPAHLAKPNVVVLDPPRAGARAKVCRQIAAAGASSVVYIACDPTSLARDTATLIG 394 Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVR 364 + ++ + FD +P T H+E L R Sbjct: 395 EGYELKDIRAFDIYPMTHHVETVALFTR 422 >gi|261405173|ref|YP_003241414.1| TrmA family RNA methyltransferase [Paenibacillus sp. Y412MC10] gi|261281636|gb|ACX63607.1| RNA methyltransferase, TrmA family [Paenibacillus sp. Y412MC10] Length = 532 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 55/184 (29%), Positives = 82/184 (44%), Gaps = 19/184 (10%) Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 +F Q N V + E V AA G+ G +++ YCG G L LA + V +E + Sbjct: 360 AFFQLNPQQTVKLYESVRAAA-GLTGKETVIDAYCGTGTIGLWLAPYAKEVRGIETIPEA 418 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 VE A+ N N N ++E +E + I DPPR+G Sbjct: 419 VEDAKANAQRNGRANASFHVGQAEELLPRWVKE------------GMKPDVIIADPPRTG 466 Query: 304 LDDATVGMV-QAYPH-ILYISCNPDSLCRDLSI-LSTTHTIERLALFDQFPYTRHMECGV 360 LD + V + P +Y+SCNP +L +D + L + +E D FP T H+E V Sbjct: 467 LDPRFLETVLRTKPKRFVYVSCNPSTLAKDCKVLLDGGYELEWAQPVDMFPQTSHVEA-V 525 Query: 361 LLVR 364 LL++ Sbjct: 526 LLMK 529 >gi|227877151|ref|ZP_03995225.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus crispatus JV-V01] gi|256848986|ref|ZP_05554420.1| RNA methyltransferase [Lactobacillus crispatus MV-1A-US] gi|262047127|ref|ZP_06020086.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus crispatus MV-3A-US] gi|227863205|gb|EEJ70650.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus crispatus JV-V01] gi|256714525|gb|EEU29512.1| RNA methyltransferase [Lactobacillus crispatus MV-1A-US] gi|260572704|gb|EEX29265.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus crispatus MV-3A-US] Length = 462 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 40/153 (26%), Positives = 73/153 (47%), Gaps = 14/153 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L++ Y G G ++ A +V+ +E +V+ A++N+ NH+ N ++ S ++ Sbjct: 317 LIDAYSGVGTLGILAADRVKQVVGIETIPEAVKDAQHNVELNHIKNADYIQGSVEKV--- 373 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330 L ++ + VDPPR+GL + + +++ P +YISCNP +L + Sbjct: 374 ---------LPELQNSGVAINALIVDPPRTGLAKSLIKTLLRVKPETFVYISCNPSTLAQ 424 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363 DL +LS + + + D P T E LV Sbjct: 425 DLVLLSEAYDVRVIQNVDMLPQTPRCEAIAKLV 457 >gi|260889091|ref|ZP_05900354.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Leptotrichia hofstadii F0254] gi|260861151|gb|EEX75651.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Leptotrichia hofstadii F0254] Length = 476 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 39/155 (25%), Positives = 73/155 (47%), Gaps = 15/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + +L+ G G ++++ +V +E+ +VE A N N++ N + Sbjct: 331 VFDLFSGTGTIGQIVSKKAKQVYGIELVPEAVEKANENAKLNNIQNAHFIAGDV------ 384 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330 F +L + D + + +DPPR+G+ + T+ + Y +I+Y+SCNP +L Sbjct: 385 ------FAKLDEFDNNGINPDILILDPPRAGVGEKTITKLVKYNTKNIIYVSCNPKTLMT 438 Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364 DL + + R ++ D FP T H+E LL + Sbjct: 439 DLMKFEEFGYRLVRCSVVDMFPVTPHLEVVCLLEK 473 >gi|325841300|ref|ZP_08167401.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Turicibacter sp. HGF1] gi|325489981|gb|EGC92328.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Turicibacter sp. HGF1] Length = 468 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 38/154 (24%), Positives = 71/154 (46%), Gaps = 14/154 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G +A V V+I + ++ A+ N N+++N ++ Sbjct: 314 VVDAYCGVGTIGQWVADQASEVRGVDITRAAIIDAKANAKLNNIDNTYYAVGKAESIVPK 373 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330 E ++ + VDPPR+G+ + M++ I+Y+SCNP +L + Sbjct: 374 WTNE------------GFKPDVVIVDPPRTGMGPELIEMLKRVQPKRIVYVSCNPSTLAK 421 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 +L L+ + ++ + D FP T H+E V L R Sbjct: 422 NLKELTKKYRVDYIQPIDMFPQTSHVEAVVRLTR 455 >gi|303253313|ref|ZP_07339462.1| 23S rRNA methyluridine methyltransferase [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307248135|ref|ZP_07530163.1| 23S rRNA (uracil-5-)-methyltransferase rumB [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307261594|ref|ZP_07543262.1| 23S rRNA (uracil-5-)-methyltransferase rumB [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|302647995|gb|EFL78202.1| 23S rRNA methyluridine methyltransferase [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|306855312|gb|EFM87487.1| 23S rRNA (uracil-5-)-methyltransferase rumB [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306868717|gb|EFN00526.1| 23S rRNA (uracil-5-)-methyltransferase rumB [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 391 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 42/159 (26%), Positives = 78/159 (49%), Gaps = 23/159 (14%) Query: 215 ELYCGNGNFSLVLARHFD------RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268 +L+CG G F L A+ ++ +EI+ ++ +A + A + NV + S + Sbjct: 247 DLFCGVGGFGLHCAKALQEKNENVQLTGIEISASAIASATQSAAQLQLKNVTFASLDSAQ 306 Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPD 326 F A+ ++ K D+ + V+PPR G+ + P+++Y SCN Sbjct: 307 F--ALN-----DKGKSPDL-------VIVNPPRRGIGKPLAEFLNELGTPYLIYSSCNAQ 352 Query: 327 SLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 ++ +D LS ++++++ LFD FP+T H E LV+K Sbjct: 353 TMAKDFEALSN-YSLQKVQLFDMFPHTSHYEVLTFLVKK 390 >gi|171778765|ref|ZP_02919861.1| hypothetical protein STRINF_00713 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171282722|gb|EDT48146.1| hypothetical protein STRINF_00713 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 496 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 42/160 (26%), Positives = 68/160 (42%), Gaps = 14/160 (8%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G A V ++I ++ A+ N +N ++E Sbjct: 308 VIDAYCGVGTIGFAFADKVKSVRGMDIIPEAIADAKKNAQRMGFDNTHYEAGRAEEIIPK 367 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330 +E YR + VDPPR+GLDD + + Y ++Y+SCN +L R Sbjct: 368 WYKE------------GYRADALIVDPPRTGLDDKLLDTILKYQPAKMVYVSCNTATLAR 415 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRKPSGWH 370 DL LS + + + D FP+T E V L ++ H Sbjct: 416 DLVKLSKVYDVHYIQSVDMFPHTARTEAVVKLSKRDINHH 455 >gi|297191558|ref|ZP_06908956.1| RNA methyltransferase [Streptomyces pristinaespiralis ATCC 25486] gi|297150990|gb|EDY63203.2| RNA methyltransferase [Streptomyces pristinaespiralis ATCC 25486] Length = 456 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 53/160 (33%), Positives = 80/160 (50%), Gaps = 23/160 (14%) Query: 210 QGDL-LELYCGNGNFSLVLA-RHFDR--VLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265 +GD+ L+LYCG G F+ LA R D+ VL +E +K +VE AR+N+ VR+ Sbjct: 306 KGDMALDLYCGVGLFAGALADRVGDKGAVLGIETSKRAVEDARHNL-----QQFDRVRVE 360 Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISC 323 + + R + +D+ I +DPPR+G TV + I Y++C Sbjct: 361 HGKVEAVLPR----TGIDSVDL-------IVLDPPRAGAGKQTVRHLAGLGARRIAYVAC 409 Query: 324 NPDSLCRDLSILSTTHTIER-LALFDQFPYTRHMECGVLL 362 +P +L RDL+ + R L FD FP T H+EC +L Sbjct: 410 DPAALARDLAYFAEAGYKPRTLRAFDLFPMTHHVECVAIL 449 >gi|119026073|ref|YP_909918.1| RNA methyltransferase [Bifidobacterium adolescentis ATCC 15703] gi|118765657|dbj|BAF39836.1| hypothetical RNA methyltransferase [Bifidobacterium adolescentis ATCC 15703] Length = 421 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 66/211 (31%), Positives = 99/211 (46%), Gaps = 26/211 (12%) Query: 169 ERLTVAGRTLIYRQIENSFTQ-----PNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGN 222 E++TV GR Y F Q P A + H++ V G L +LY G+G Sbjct: 224 EKVTVCGREFEYGVDAGGFWQMHRHAPIA-LTGHVMSLVHGELDGATSACLWDLYSGSGL 282 Query: 223 FSLVLAR---HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279 F+L LA R+L+VE K +V+ A+ N+ A H+ NV R+ T A R Sbjct: 283 FTLPLATLSAGRTRMLSVEGGKTAVKHAQRNLRAIHLGNVD-ARVGDVAKTLANVR---- 337 Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST 337 N L DI + +DPPR+G + ++YI+C+P SL RD + L++ Sbjct: 338 NDLAKPDI-------VVLDPPRAGARAKVCRQIAESGARSVVYIACDPASLARDTATLAS 390 Query: 338 -THTIERLALFDQFPYTRHMECGVLLVRKPS 367 + + + FD +P T H+E V L RK + Sbjct: 391 LGYDLADIRAFDIYPTTHHVET-VALFRKAT 420 >gi|24212798|ref|NP_710279.1| tRNA (uracil-5-)-methyltransferase [Leptospira interrogans serovar Lai str. 56601] gi|50401585|sp|Q8F9U1|Y098_LEPIN RecName: Full=Uncharacterized RNA methyltransferase LA_0098 gi|24193445|gb|AAN47297.1| tRNA (uracil-5-)-methyltransferase [Leptospira interrogans serovar Lai str. 56601] Length = 415 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 52/193 (26%), Positives = 94/193 (48%), Gaps = 16/193 (8%) Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVL 235 + +++ F+Q N + LE + Q +LELYCG+G ++ L L Sbjct: 235 KRIVWEIPAGGFSQVNRYLIAPWLEKIFELVPNNQNRILELYCGSGLIAIALKSKTTSWL 294 Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295 EI+ V+ A+ N+ N + SS +F + + E ++ +++ S+ Sbjct: 295 GYEISSDCVQQAKRNVLLNGI--------SSCDF-KTLNLETDWIDSEEVLNSSF----W 341 Query: 296 FVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCRDLSI-LSTTHTIERLALFDQFPY 352 ++PPR+GL + +++ P+ LY SCN +L RDLS+ L+ + + + L D FP Sbjct: 342 IMNPPRAGLSKKVLQTLIKTSPNGFLYSSCNHTTLVRDLSLFLNKDYKLSNVTLVDFFPR 401 Query: 353 TRHMECGVLLVRK 365 T+H E V + +K Sbjct: 402 TKHFEVIVKVEKK 414 >gi|309790389|ref|ZP_07684954.1| (Uracil-5)-methyltransferase [Oscillochloris trichoides DG6] gi|308227581|gb|EFO81244.1| (Uracil-5)-methyltransferase [Oscillochloris trichoides DG6] Length = 394 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 51/171 (29%), Positives = 85/171 (49%), Gaps = 25/171 (14%) Query: 195 NVHMLEWVLAATK---GIQGDLLELYCGNGNFSLVLARHFDRVLAVE-IAKPSVEAARYN 250 NVH+L+ +LAA G + +LY G G + LA +V++VE +A+ + AA+++ Sbjct: 235 NVHLLDHLLAAVGEAVGPVASVADLYGGVGTIGMHLAPQVGQVISVEEVAESAALAAQHS 294 Query: 251 IAANHVNNVKIVRMSSKEF--TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD-DA 307 +A V N++ + + TQA + VDPPR GL + Sbjct: 295 VAQG-VTNLQAINQDVLSYLRTQA----------------PAAWPVAVVDPPRIGLGPEV 337 Query: 308 TVGMVQAYPH-ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHME 357 +++ P ++Y+SCNP +L DL IL + + L +D FP+T H+E Sbjct: 338 CAELLRIAPQRLVYVSCNPITLVEDLRILGAHYRLRHLTGYDMFPHTPHVE 388 >gi|257437892|ref|ZP_05613647.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Faecalibacterium prausnitzii A2-165] gi|257199552|gb|EEU97836.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Faecalibacterium prausnitzii A2-165] Length = 374 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 48/155 (30%), Positives = 74/155 (47%), Gaps = 15/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +L+ YCG G L + +V+ VE+ + +V A N A H N+VK R + + TQ Sbjct: 226 VLDAYCGIGTIGLTASGRAKQVVGVELNRDAVRDAIGN--ARH-NDVKNARFFAADATQW 282 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCR 330 + + D+ IF+DPPR G + V A ++Y+SCNP+++ R Sbjct: 283 ITEAAAAGQRADV---------IFMDPPREGSTPQFIESVARMAPKRVVYVSCNPETMAR 333 Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364 DL++L+ + E D FP T H E L R Sbjct: 334 DLALLTAKGYRAEGFTPVDLFPQTAHCEVVCALTR 368 >gi|256390841|ref|YP_003112405.1| RNA methyltransferase, TrmA family [Catenulispora acidiphila DSM 44928] gi|256357067|gb|ACU70564.1| RNA methyltransferase, TrmA family [Catenulispora acidiphila DSM 44928] Length = 455 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 64/207 (30%), Positives = 95/207 (45%), Gaps = 18/207 (8%) Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGN 222 R YV R GRT +R + F Q + + E VL GD+ L+LYCG G Sbjct: 254 RPYV--REVAEGRT--WRVSGSGFWQVHPAAPDVLTEAVLDFLDPKDGDVALDLYCGVGL 309 Query: 223 FSLVLARHFDR---VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279 F+ LA VLAVE+ + +V A +N+ ++ + S EF E Sbjct: 310 FAAPLAEAVGESGAVLAVELDRQAVRDAAHNL--GFADDAE----ESTEFPWVDLVEGSV 363 Query: 280 NR-LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILS 336 + L D R + +DPPR+G + A + Y++C+P +L RD++ L+ Sbjct: 364 DEVLADEGYVPDRADVVVLDPPRAGAGRDVCARIAALGPRAVAYVACDPAALARDVAYLA 423 Query: 337 -TTHTIERLALFDQFPYTRHMECGVLL 362 + + L FD FP TRH+EC LL Sbjct: 424 EAGYELTDLRAFDLFPMTRHVECVALL 450 >gi|165976538|ref|YP_001652131.1| 23S rRNA methyluridine methyltransferase [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|165876639|gb|ABY69687.1| SAM-dependent methyltransferase related to tRNA(uracil-5-)-methyltransferase [Actinobacillus pleuropneumoniae serovar 3 str. JL03] Length = 391 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 42/159 (26%), Positives = 78/159 (49%), Gaps = 23/159 (14%) Query: 215 ELYCGNGNFSLVLARHFD------RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268 +L+CG G F L A+ ++ +EI+ ++ +A + A + NV + S + Sbjct: 247 DLFCGVGGFGLHCAKALQEKNENVQLTGIEISASAIASATQSAAQLQLKNVTFASLDSAQ 306 Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPD 326 F A+ ++ K D+ + V+PPR G+ + P+++Y SCN Sbjct: 307 F--ALN-----DKGKSPDL-------VIVNPPRRGIGKPLAEFLNELGTPYLIYSSCNAQ 352 Query: 327 SLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 ++ +D LS ++++++ LFD FP+T H E LV+K Sbjct: 353 TMAKDFEALSN-YSLQKVQLFDMFPHTSHYEVLTFLVKK 390 >gi|307250368|ref|ZP_07532316.1| 23S rRNA (uracil-5-)-methyltransferase rumB [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306857578|gb|EFM89686.1| 23S rRNA (uracil-5-)-methyltransferase rumB [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 391 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 42/159 (26%), Positives = 78/159 (49%), Gaps = 23/159 (14%) Query: 215 ELYCGNGNFSLVLARHFD------RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268 +L+CG G F L A+ ++ +EI+ ++ +A + A + NV + S + Sbjct: 247 DLFCGVGGFGLHCAKALQEKNENVQLTGIEISASAIASATQSAAQLQLKNVTFASLDSAQ 306 Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPD 326 F A+ ++ K D+ + V+PPR G+ + P+++Y SCN Sbjct: 307 F--ALN-----DKGKSPDL-------VIVNPPRRGIGKPLAEFLNELGTPYLIYSSCNAQ 352 Query: 327 SLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 ++ +D LS ++++++ LFD FP+T H E LV+K Sbjct: 353 TMAKDFEALSN-YSLQKVQLFDMFPHTSHYEVLTFLVKK 390 >gi|269102464|ref|ZP_06155161.1| RNA methyltransferase TrmA family [Photobacterium damselae subsp. damselae CIP 102761] gi|268162362|gb|EEZ40858.1| RNA methyltransferase TrmA family [Photobacterium damselae subsp. damselae CIP 102761] Length = 379 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 43/155 (27%), Positives = 72/155 (46%), Gaps = 18/155 (11%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + +L+CG G F+L V +EI ++ +A+ + A + N+ + S F+ Sbjct: 240 MWDLFCGVGGFALHCVSPETDVTGIEIEPEAIASAQRSAQAMGITNLDFAALDSTGFSME 299 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCR 330 H + + V+PPR G+ + + A HI+Y SCNP++L Sbjct: 300 ---------------HDTAPELVLVNPPRRGIGEQLCQQLSYFAPKHIIYSSCNPETLAI 344 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 D+ L + +E++ FD FP+T H E VLL K Sbjct: 345 DIQRLE-GYELEKVQWFDMFPHTDHAEVLVLLSHK 378 >gi|262113703|emb|CAR95370.1| 23S rRNA m(5)U 1939 methyltransferase [Streptococcus phage phi-m46.1] Length = 462 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 48/183 (26%), Positives = 83/183 (45%), Gaps = 16/183 (8%) Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 SF Q N + + + +A + + D+ ++ Y G G L A+ V VE+ + +V Sbjct: 291 SFYQVNTIMAEKLYQTAIAFSDLSKDDIVIDAYSGIGTIGLSFAKTVKAVYGVEVIEAAV 350 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 A+ N A N + N + +++ ++ + I VDPPR GL Sbjct: 351 RDAQQNAALNGITNAYFIADTAEHAMATWAKD------------GIKPSVILVDPPRKGL 398 Query: 305 DDATV-GMVQAYPH-ILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVL 361 ++ + V P I Y+SCNP ++ RD+ + + ++ D FP T H+EC L Sbjct: 399 TESFIQASVAMGPQKITYVSCNPATMARDIKRYQELGYKLTKVQPVDLFPQTHHVECVAL 458 Query: 362 LVR 364 LV+ Sbjct: 459 LVK 461 >gi|323141153|ref|ZP_08076054.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Phascolarctobacterium sp. YIT 12067] gi|322414296|gb|EFY05114.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Phascolarctobacterium sp. YIT 12067] Length = 456 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 45/155 (29%), Positives = 73/155 (47%), Gaps = 15/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK-IVRMSSKEFTQ 271 ++++YCG G SL LARH +V +EI P++E A+ N N N + I ++ E + Sbjct: 313 VVDVYCGTGTISLYLARHAKQVYGIEIVAPAIENAKKNAEENKCANAEFICGDAAVELPK 372 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYISCNPDSLCRD 331 + + + + + + A + VQ ++Y+SCNP SL RD Sbjct: 373 LLAGGVRPDVVVVDPPRAGCEQKVL----------AAIAEVQP-ERVVYVSCNPASLARD 421 Query: 332 LSILSTTHTIERLAL--FDQFPYTRHMECGVLLVR 364 L+ + H + + D FP T H+EC LL R Sbjct: 422 LAFME-QHGYKAIVAQPVDMFPMTSHVECVTLLTR 455 >gi|293374357|ref|ZP_06620684.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Turicibacter sanguinis PC909] gi|292647020|gb|EFF65003.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Turicibacter sanguinis PC909] Length = 468 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 38/154 (24%), Positives = 71/154 (46%), Gaps = 14/154 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G +A V V+I + ++ A+ N N+++N ++ Sbjct: 314 VVDAYCGVGTIGQWVADQASEVRGVDITRAAIIDAKANAKLNNIDNTYYAVGKAESIVPK 373 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330 E ++ + VDPPR+G+ + M++ I+Y+SCNP +L + Sbjct: 374 WANE------------GFKPDVVIVDPPRTGMGPELIEMLKRVQPKRIVYVSCNPSTLAK 421 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 +L L+ + ++ + D FP T H+E V L R Sbjct: 422 NLKELTKKYRVDYIQPIDMFPQTSHVEAVVRLTR 455 >gi|257792631|ref|YP_003183237.1| RNA methyltransferase, TrmA family [Eggerthella lenta DSM 2243] gi|257476528|gb|ACV56848.1| RNA methyltransferase, TrmA family [Eggerthella lenta DSM 2243] Length = 438 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 57/200 (28%), Positives = 86/200 (43%), Gaps = 20/200 (10%) Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDR-V 234 L +R SF Q NA + +L G G ++ YCG G LV A+ R V Sbjct: 249 LSFRISSQSFYQVNA-VQTEVLYERAIDLAGFTGSETAIDAYCGTGTIGLVAAKRGARQV 307 Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294 + V+ +V AR N N V N + + F MR D+ Sbjct: 308 IGVDTVASAVRDARENAKHNGVENARFAVGDAGAF---MRERAAAGDAVDV--------- 355 Query: 295 IFVDPPRSGLDDA--TVGMVQAYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFP 351 + +DPPR+G + + A I+YISCNP + RDL+ L + + + D FP Sbjct: 356 LLMDPPRAGSSEEFLAAAVTLAPRRIVYISCNPTTQVRDLAFLRQRGYAVRTVQPVDMFP 415 Query: 352 YTRHMECGVLLVRKPSGWHQ 371 +T H+E + LV + G+ + Sbjct: 416 HTDHIET-IALVERVEGFFE 434 >gi|220911913|ref|YP_002487222.1| 23S rRNA methyluridine methyltransferase [Arthrobacter chlorophenolicus A6] gi|219858791|gb|ACL39133.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Arthrobacter chlorophenolicus A6] Length = 375 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 51/185 (27%), Positives = 83/185 (44%), Gaps = 25/185 (13%) Query: 186 SFTQPNAGINVHML----EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241 SF Q N+ + + EWV + + +LYCG G F+L +A V +E + Sbjct: 208 SFFQTNSHMAAALYRQGREWV---NELAPASVWDLYCGVGGFALHVANPSRTVTGIETSS 264 Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301 ++ +AR + + ++ + F A R+ + + V+PPR Sbjct: 265 EAIVSARLSSDEAGLQGMEFEAGDATAFALAARQAPDL---------------VIVNPPR 309 Query: 302 SGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359 G+ G +++ H++Y SCN SL RDL+ L + T R+ + D FP T H E Sbjct: 310 RGIGKELCGWLESSDVQHVVYSSCNAQSLARDLAALP-SFTARRVRVLDMFPQTTHYEVM 368 Query: 360 VLLVR 364 VLL R Sbjct: 369 VLLER 373 >gi|167619816|ref|ZP_02388447.1| 23S rRNA 5-methyluridine methyltransferase [Burkholderia thailandensis Bt4] gi|257138961|ref|ZP_05587223.1| 23S rRNA 5-methyluridine methyltransferase [Burkholderia thailandensis E264] gi|143580771|sp|Q2SWE9|RUMA_BURTA RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase Length = 465 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 56/190 (29%), Positives = 83/190 (43%), Gaps = 24/190 (12%) Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 FTQ N IN ++ L +GD +L+L+CG GNF+L LAR V+ +E ++ Sbjct: 287 FTQVNHQINRVLVGRALRLLAPERGDRVLDLFCGIGNFTLPLARLAREVVGIEGSETLTS 346 Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY-RFKTIFVDPPRSG- 303 A N N V+ F R + D+H+ F VDPPR G Sbjct: 347 RALANAKENGVDG-------HTSFAS-----RNLFEVTADDLHALGAFDKFLVDPPREGA 394 Query: 304 -------LDDATVGMVQAYPHILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTR 354 + A G I+Y+SCNP +L RD +L + ++ + + FP+T Sbjct: 395 LAVSKALAEIAQSGEGPLPARIVYVSCNPSTLARDAGLLVHEAGYRLKGAGVVNMFPHTS 454 Query: 355 HMECGVLLVR 364 H+E L R Sbjct: 455 HVESIALFER 464 >gi|322420278|ref|YP_004199501.1| TrmA family RNA methyltransferase [Geobacter sp. M18] gi|320126665|gb|ADW14225.1| RNA methyltransferase, TrmA family [Geobacter sp. M18] Length = 566 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 61/189 (32%), Positives = 89/189 (47%), Gaps = 21/189 (11%) Query: 185 NSFTQPNAGINVHMLEWV--LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 +SF Q N+G + E V LA G + ++++YCG G SL LA V+ +E + Sbjct: 393 HSFFQVNSGAARIIYEKVRELARLTGKE-RVIDVYCGIGGISLFLADQAREVVGIEFVEA 451 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302 +V A N A N N E A+ E D+ I ++PPR Sbjct: 452 AVADATLNAALNLARNCHF------EAGDAVHLIDEIGEEGGADL-------IVLNPPRK 498 Query: 303 GLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTT--HTIERLALFDQFPYTRHMEC 358 G D+ + V A I+Y+SC+P++L RDL IL+ T+E + D FP T H+E Sbjct: 499 GCDEKVLKSVAAIKPARIIYVSCSPETLARDLDILAQLGYKTLE-VHPVDMFPQTVHVED 557 Query: 359 GVLLVRKPS 367 LL R+ S Sbjct: 558 VALLERRES 566 >gi|262282787|ref|ZP_06060555.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus sp. 2_1_36FAA] gi|262262078|gb|EEY80776.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus sp. 2_1_36FAA] Length = 454 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 42/157 (26%), Positives = 70/157 (44%), Gaps = 14/157 (8%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L++ YCG G A+ + ++I ++E A+ N +N +++E Sbjct: 306 LIDAYCGVGTIGFAFAKRVKSLRGMDIIPEAIEDAKRNAKRMGFDNTLYEAGTAEEIIPR 365 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCR 330 E +R + VDPPR+GLDD + + Y ++Y+SCN +L R Sbjct: 366 WYTE------------GFRADALIVDPPRTGLDDKLLETIVRYAPEKMVYVSCNVSTLAR 413 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRKPS 367 DL LS + + + D FP+T E V L ++ S Sbjct: 414 DLVKLSQVYDVHYIQSVDMFPHTARTEAVVKLSKRDS 450 >gi|239996013|ref|ZP_04716537.1| RNA methyltransferase, TrmA family protein [Alteromonas macleodii ATCC 27126] Length = 486 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 60/235 (25%), Positives = 101/235 (42%), Gaps = 29/235 (12%) Query: 134 CAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAG 193 C I L+ L ++ QI+ +GR T + ++ TV + N F Q N Sbjct: 276 CGIELK--LENKQAQIRSVGRG--TDMVMN--------TV--NSCSISPSANDFIQINKV 321 Query: 194 INVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIA 252 +N M+ + + + + + G GNF+L +A+ +V AVE V A+ N Sbjct: 322 VNEKMVNQAIGWLNPEPNERVADWFSGLGNFTLPIAKLGAKVQAVEGVAEMVRRAKDNAQ 381 Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312 + NV+ + + + T + F + +DP R G +V Sbjct: 382 QQGIENVEWLHLDLADKTNVEASLQ------------LGFDKVLLDPSREGALTVCHALV 429 Query: 313 QAYPH-ILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRK 365 +A P I+Y+SCNP + RD +L + +E+ + + FP+T HME L RK Sbjct: 430 KALPKTIVYVSCNPSTFSRDAKVLIDGGYEMEKAGVAEMFPFTHHMEMMALFTRK 484 >gi|224419305|ref|ZP_03657311.1| tRNA (uracil-5-)-methyltransferase [Helicobacter canadensis MIT 98-5491] gi|313142804|ref|ZP_07804997.1| predicted protein [Helicobacter canadensis MIT 98-5491] gi|313131835|gb|EFR49452.1| predicted protein [Helicobacter canadensis MIT 98-5491] Length = 55 Score = 67.8 bits (164), Expect = 3e-09, Method: Composition-based stats. Identities = 31/53 (58%), Positives = 38/53 (71%) Query: 315 YPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRKPS 367 + ILYISCNP SL +DL ILS TH I + A FDQFP+T H+E G+LL + S Sbjct: 1 FSSILYISCNPLSLAKDLKILSQTHRIVKAAFFDQFPHTSHLETGILLQKVDS 53 >gi|325695098|gb|EGD37000.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis SK150] Length = 456 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 43/157 (27%), Positives = 68/157 (43%), Gaps = 14/157 (8%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L++ YCG G A+ + ++I ++E A+ N N +++E Sbjct: 308 LIDAYCGVGTIGFAFAKKVKSLRGMDIIPEAIEDAKRNAKRMGFTNTLYEAGTAEEIIPR 367 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCR 330 E YR + VDPPR+GLDD + + Y ++Y+SCN +L R Sbjct: 368 WYAE------------GYRADALIVDPPRTGLDDKLLETIVRYAPEKMVYVSCNVSTLAR 415 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRKPS 367 DL L + + + D FP+T E V L +K S Sbjct: 416 DLVKLCRVYDVRYIQSVDMFPHTARTEAVVKLSKKDS 452 >gi|262282939|ref|ZP_06060706.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus sp. 2_1_36FAA] gi|262261191|gb|EEY79890.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus sp. 2_1_36FAA] Length = 480 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 47/155 (30%), Positives = 76/155 (49%), Gaps = 15/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ Y G G L +A+H V VE+ +VE ++ N A N + N V +++ A Sbjct: 332 VVDAYSGIGTIGLSVAKHVKEVYGVEVIPEAVENSKKNAAINGITNSHYVCDTAE---NA 388 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV--GMVQAYPHILYISCNPDSLCR 330 M+ N LK+ + I VDPPR GL ++ + I YISCN ++ R Sbjct: 389 MK-----NWLKE----GIQPSLILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMAR 439 Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364 D+ + + ++++ D FP T H+E LLVR Sbjct: 440 DIKLYQELGYELKKVQPVDLFPQTHHVEAVSLLVR 474 >gi|254467847|ref|ZP_05081253.1| 23S rRNA (uracil-5-)-methyltransferase [beta proteobacterium KB13] gi|207086657|gb|EDZ63940.1| 23S rRNA (uracil-5-)-methyltransferase [beta proteobacterium KB13] Length = 437 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 69/261 (26%), Positives = 117/261 (44%), Gaps = 26/261 (9%) Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQI--QLIGRANKTKICLD 163 QI+Y S D+ I R+LD E +L + +AR +I Q G + + Sbjct: 185 QIEY-ASNGDRDIFIF---RILDPLSIEDIKKLSEFSNARNIEIWTQSKGPETVKPLFPE 240 Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATK-GIQGDLLELYCGNGN 222 RD +A L + F Q N IN M++ L Q ++++ + G GN Sbjct: 241 RDSEIISYPIAKYELNLEFNPSGFIQINPYINQLMIDKALELLNLNPQDEVVDFFSGLGN 300 Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF-NR 281 F+L +A++ V+ +E ++ V + N N++NNV S +++ + +F N Sbjct: 301 FTLPIAKYAHSVIGIEGSEDLVNLGQKNAGLNNLNNV------SFQYSNLFEVDVDFVNS 354 Query: 282 LKDIDIHSYRFKTIFVDPPRSG---LDDATVGMVQAYPHILYISCNPDSLCRDLSIL--S 336 LK+ + +DPPR G L + I+Y+SCNP +L RD +IL Sbjct: 355 LKNKN-------KWLLDPPRDGAMQLLELISKDTMLPETIVYVSCNPATLARDANILVND 407 Query: 337 TTHTIERLALFDQFPYTRHME 357 + + + + FP+T H+E Sbjct: 408 KGYKYQSAGILNMFPHTSHIE 428 >gi|332367359|gb|EGJ45092.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis SK1059] Length = 456 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 42/157 (26%), Positives = 70/157 (44%), Gaps = 14/157 (8%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L++ YCG G+ A+ + ++I ++E A+ N +N +++E Sbjct: 308 LIDAYCGVGSIGFAFAKRVKSLRGMDIIPEAIEDAKRNAKRMGFDNTLYEAGTAEEIIPR 367 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCR 330 E YR + VDPPR+GLDD + + Y ++Y+SCN +L R Sbjct: 368 WYAE------------GYRANALIVDPPRTGLDDKLLETIVRYAPKKMVYVSCNVSTLAR 415 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRKPS 367 DL L + + + D FP+T E V L ++ S Sbjct: 416 DLVKLCQVYDVHYIQSVDMFPHTARTEAVVKLSKRDS 452 >gi|227873615|ref|ZP_03991853.1| TrmA family RNA methyltransferase [Oribacterium sinus F0268] gi|227840533|gb|EEJ50925.1| TrmA family RNA methyltransferase [Oribacterium sinus F0268] Length = 422 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 45/158 (28%), Positives = 76/158 (48%), Gaps = 13/158 (8%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + +LY G G + ++++ + + VEI + +VEAA+ N N V N + +A Sbjct: 275 IYDLYSGTGTITQLMSKVAKQAIGVEIVEEAVEAAKENAKENKVENCIFYAGDVLKVLEA 334 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330 + E L D I VDPPR G+ + + +Y ++Y++C P SL R Sbjct: 335 GQGATE---LPYPDF-------IIVDPPRDGMHKKALEKIISYGVKRLVYVACKPKSLAR 384 Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRKPS 367 DL L + + +++L D FP T + E LL ++ S Sbjct: 385 DLEALQNAGYKVQKLCAVDMFPRTNNCEVVALLEKEES 422 >gi|327462889|gb|EGF09210.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis SK1] Length = 456 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 42/157 (26%), Positives = 70/157 (44%), Gaps = 14/157 (8%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L++ YCG G+ A+ + ++I ++E A+ N +N +++E Sbjct: 308 LIDAYCGVGSIGFAFAKRVKSLRGMDIIPEAIEDAKRNAKRMGFDNTLYEAGTAEEIIPR 367 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCR 330 E YR + VDPPR+GLDD + + Y ++Y+SCN +L R Sbjct: 368 WYAE------------GYRANALIVDPPRTGLDDKLLETIVRYAPKKMVYVSCNVSTLAR 415 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRKPS 367 DL L + + + D FP+T E V L ++ S Sbjct: 416 DLVKLCQVYDVHYIQSVDMFPHTARTEAVVKLSKRDS 452 >gi|332362833|gb|EGJ40626.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis SK49] Length = 456 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 42/157 (26%), Positives = 69/157 (43%), Gaps = 14/157 (8%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L++ YCG G A+ + ++I ++E A+ N +N +++E Sbjct: 308 LIDAYCGVGTIGFAFAKRVKSLRGMDIIPEAIEDAKRNAKKMGFDNTLYEAGTAEEIIPR 367 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCR 330 E YR + VDPPR+GLDD + + Y ++Y+SCN +L R Sbjct: 368 WYTE------------GYRADALIVDPPRTGLDDKLLETIVRYAPEKMVYVSCNVSTLAR 415 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRKPS 367 DL L + + + D FP+T E V L ++ S Sbjct: 416 DLVKLCQVYDVHYIQSVDMFPHTARTEAVVKLSKRNS 452 >gi|72162326|ref|YP_289983.1| 23S rRNA methyltransferase/RumA [Thermobifida fusca YX] gi|71916058|gb|AAZ55960.1| 23S rRNA methyltransferase/RumA [Thermobifida fusca YX] Length = 419 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 50/156 (32%), Positives = 75/156 (48%), Gaps = 23/156 (14%) Query: 214 LELYCGNGNFSLVLARHFD---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270 L+LYCG G F+ L RV VE +V AR+N+ ++ V+++ + Sbjct: 278 LDLYCGVGLFAGALGAAVGPQGRVFGVESGAEAVRDARHNL-----RDLPQVQITRADVA 332 Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY-PH-ILYISCNPDSL 328 +RR R + DPPRSG+ V + A P I Y+SC+P + Sbjct: 333 THLRR-----------WTPPRIDLVVADPPRSGMGADVVRRLAALRPQRIAYVSCDPATF 381 Query: 329 CRDLSILST-THTIERLALFDQFPYTRHMEC-GVLL 362 RDL++ + + ++ L FD FP T H+EC GVLL Sbjct: 382 ARDLAVFAEHGYRMDGLRAFDAFPMTHHVECVGVLL 417 >gi|324993619|gb|EGC25538.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis SK405] gi|324995069|gb|EGC26982.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis SK678] gi|327490048|gb|EGF21836.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis SK1058] Length = 456 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 42/157 (26%), Positives = 70/157 (44%), Gaps = 14/157 (8%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L++ YCG G+ A+ + ++I ++E A+ N +N +++E Sbjct: 308 LIDAYCGVGSIGFAFAKRVKSLRGMDIIPEAIEDAKRNAKRMGFDNTLYEAGTAEEIIPR 367 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCR 330 E YR + VDPPR+GLDD + + Y ++Y+SCN +L R Sbjct: 368 WYAE------------GYRANALIVDPPRTGLDDKLLETIVRYAPKKMVYVSCNVSTLAR 415 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRKPS 367 DL L + + + D FP+T E V L ++ S Sbjct: 416 DLVKLCQVYDVHYIQSVDMFPHTARTEAVVKLSKRDS 452 >gi|157146487|ref|YP_001453806.1| 23S rRNA methyluridine methyltransferase [Citrobacter koseri ATCC BAA-895] gi|167012636|sp|A8AIQ7|RUMB_CITK8 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName: Full=23S rRNA(M-5-U747)-methyltransferase gi|157083692|gb|ABV13370.1| hypothetical protein CKO_02247 [Citrobacter koseri ATCC BAA-895] Length = 376 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 44/154 (28%), Positives = 72/154 (46%), Gaps = 18/154 (11%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + +L+CG G F L A + +EIA ++ A+ + A + N+ + S +F Sbjct: 237 MWDLFCGVGGFGLHCATPEMTLTGIEIAPEAIACAKQSAAELGLTNLHFQALDSTQFATG 296 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCR 330 E + V+PPR G+ A + Q P +I+Y SCN ++ + Sbjct: 297 QGEVPEL---------------VLVNPPRRGIGKALCDYLSQMAPEYIIYSSCNAQTMAK 341 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D++ L + IER+ LFD FP+T H E LL + Sbjct: 342 DIANLPG-YRIERVQLFDMFPHTAHYEVLTLLTK 374 >gi|125718628|ref|YP_001035761.1| RNA methyltransferase [Streptococcus sanguinis SK36] gi|125498545|gb|ABN45211.1| RNA methyltransferase, putative [Streptococcus sanguinis SK36] Length = 456 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 42/157 (26%), Positives = 69/157 (43%), Gaps = 14/157 (8%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L++ YCG G A+ + ++I ++E A+ N +N +++E Sbjct: 308 LIDAYCGVGTIGFAFAKRVKSLRGMDIIPEAIEDAKRNAKKMGFDNTLYEAGTAEEIIPR 367 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCR 330 E YR + VDPPR+GLDD + + Y ++Y+SCN +L R Sbjct: 368 WYAE------------GYRADALIVDPPRTGLDDKLLETIVRYAPEKMVYVSCNVSTLAR 415 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRKPS 367 DL L + + + D FP+T E V L ++ S Sbjct: 416 DLVKLCQVYDVHYIQSVDMFPHTARTEAVVKLSKRNS 452 >gi|311896063|dbj|BAJ28471.1| putative RNA methyltransferase [Kitasatospora setae KM-6054] Length = 558 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 63/206 (30%), Positives = 96/206 (46%), Gaps = 27/206 (13%) Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGN 222 R +V ER AGRT +R F Q + +++ VL G+ L+LYCG G Sbjct: 368 RTFVRER--AAGRT--WRVSNGGFWQIHPEAPDTLVDAVLTGLDPQWGESALDLYCGVGL 423 Query: 223 FSLVLARHFDR---VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279 F+ LA VL +E K +V AR+N+AA ++ VR+ + + R Sbjct: 424 FAGALAERVGEEGAVLGIESGKQAVLDARHNLAA-----LEQVRIECDKVETLLPR---- 474 Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSIL-S 336 + D+ I +DPPR+G TV + + I Y++C+P +L RDL+ Sbjct: 475 TGITSTDL-------IVLDPPRAGAGRETVAHLSSLEARRIAYVACDPAALARDLAFFRE 527 Query: 337 TTHTIERLALFDQFPYTRHMECGVLL 362 + + L FD FP T+H EC +L Sbjct: 528 GGYRLVSLRAFDLFPMTQHFECVAIL 553 >gi|331091394|ref|ZP_08340233.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lachnospiraceae bacterium 2_1_46FAA] gi|330404258|gb|EGG83805.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lachnospiraceae bacterium 2_1_46FAA] Length = 454 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 61/232 (26%), Positives = 102/232 (43%), Gaps = 23/232 (9%) Query: 137 RLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINV 196 ++ LH + + +++KT + +DY E L + ++ SF QPN+ Sbjct: 241 KIVGILHILNDSLSDVVQSDKTILLYGQDYFYEELL----GMEFKITPFSFFQPNSVGAE 296 Query: 197 HMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH 255 + + V I + +L+ G G +LA V+ VEI + +VEAA+ N N Sbjct: 297 VLYDTVREYIGDIDNMTIYDLFSGTGTIGQILAPVAKEVIGVEIIEEAVEAAKENAEHNG 356 Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY 315 ++N K + F L +I+ + I +DPPR G+ + + Y Sbjct: 357 LSNCKFIAGDV------------FKVLDEIE---EKPDVIVLDPPRDGIHPKALPKILDY 401 Query: 316 --PHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364 I+YISC SL RDL ++ + +E+ DQF T H+E LL + Sbjct: 402 QVDKIVYISCKVTSLARDLEMIQERGYRVEKCVAVDQFANTAHVETVALLSK 453 >gi|238923775|ref|YP_002937291.1| tRNA (uracil-5-) -methyltransferase [Eubacterium rectale ATCC 33656] gi|238875450|gb|ACR75157.1| tRNA (uracil-5-) -methyltransferase [Eubacterium rectale ATCC 33656] Length = 470 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 66/242 (27%), Positives = 112/242 (46%), Gaps = 30/242 (12%) Query: 137 RLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINV 196 R + LH + + + + T++ Y E+L L ++ SF Q N+ + Sbjct: 248 RFKGVLHTKNDSVADVVKNEGTEVLYGDSYFYEKLL----GLKFKITPFSFFQTNS-LGA 302 Query: 197 HML-----EWVLAATK-GIQGDLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249 +L E++L K + G + +LY G G + ++A V+ VEI + +V AA+ Sbjct: 303 EVLYETAREFILGDNKDSLNGKTVYDLYSGTGTIAQLMAPVCKEVVGVEIVEEAVCAAKE 362 Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309 N A N ++N K + + LK +D + I +DPPR G+ + Sbjct: 363 NAALNGLDNCKFIAG---------------DVLKVLDEIEEKPDYIILDPPRDGIHPKAI 407 Query: 310 GMVQAY--PHILYISCNPDSLCRDLSI-LSTTHTIERLALFDQFPYTRHMECGVLLVRKP 366 G + Y +++YISC P SL RDL I + + +E++ D FP T H+E VL+ + Sbjct: 408 GKIIEYGVENMVYISCKPTSLARDLQIFMDRGYRVEKICCVDMFPNTYHVETVVLMSKVN 467 Query: 367 SG 368 G Sbjct: 468 PG 469 >gi|222147749|ref|YP_002548706.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Agrobacterium vitis S4] gi|221734737|gb|ACM35700.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Agrobacterium vitis S4] Length = 418 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 48/152 (31%), Positives = 82/152 (53%), Gaps = 15/152 (9%) Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274 +L+CG G F+L LAR +VLAVE + +V+A ++AA + +K ++ ++ R Sbjct: 279 DLFCGIGTFTLRLARQA-QVLAVESDEKAVKA--LDLAARNTKGLKPIKAEKRDL---FR 332 Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA-YPHILYISCNPDSLCRDLS 333 R + LK +D + DPPR+G ++ + ++ I+ +SCN +L RDLS Sbjct: 333 RPLMVSELKGLD-------AVVFDPPRAGAEEQCAELARSQVKTIVAVSCNALTLARDLS 385 Query: 334 IL-STTHTIERLALFDQFPYTRHMECGVLLVR 364 IL + + I + DQF ++ H+E V L + Sbjct: 386 ILMAGGYRITAVTPIDQFLWSPHVEVVVALTK 417 >gi|149197047|ref|ZP_01874100.1| tRNA (uracil-5-) -methyltransferase [Lentisphaera araneosa HTCC2155] gi|149140157|gb|EDM28557.1| tRNA (uracil-5-) -methyltransferase [Lentisphaera araneosa HTCC2155] Length = 403 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 47/153 (30%), Positives = 81/153 (52%), Gaps = 17/153 (11%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ +CG+G S+ L +V+ +EI VEAA +N + K V + + + Sbjct: 260 VIDAFCGSGFLSMGLRDV--KVVGLEIDAKGVEAANFNAQDQGLTTHKYV---AGDVNKL 314 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCR 330 +R+ RL + + T+ +DPPR+G+ T+ + ++ ILY+SC+P +L R Sbjct: 315 LRQ-----RLGKLAPET----TLILDPPRAGVGPGTIKAISKRSPKWILYVSCDPGTLGR 365 Query: 331 DLS-ILSTTHTIERLALFDQFPYTRHMECGVLL 362 DL IL + ++LA+ D FP T H E +LL Sbjct: 366 DLKEILPLGYKHKKLAMLDMFPQTSHFESLILL 398 >gi|224543217|ref|ZP_03683756.1| hypothetical protein CATMIT_02417 [Catenibacterium mitsuokai DSM 15897] gi|224523850|gb|EEF92955.1| hypothetical protein CATMIT_02417 [Catenibacterium mitsuokai DSM 15897] Length = 448 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 45/156 (28%), Positives = 72/156 (46%), Gaps = 16/156 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G SL LA+H +V VE+ ++ A+ N NH+ N + V + F Sbjct: 306 VIDAYCGIGTISLTLAKHVKKVYGVEVVPQAIVDAKENAERNHITNAEFVCDDAGHFMTE 365 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330 E + + VDPPR G + + P I+YISCN + R Sbjct: 366 FVERNE------------KVDCVMVDPPRKGCSTEFLERLTTLSPERIVYISCNVATQAR 413 Query: 331 DLS-ILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 DL+ ++ + + D FP+T H+E +LL+ K Sbjct: 414 DLTYLVEKGYKPLNVQPVDMFPHTPHIE-NILLLSK 448 >gi|319937265|ref|ZP_08011672.1| hypothetical protein HMPREF9488_02507 [Coprobacillus sp. 29_1] gi|319807631|gb|EFW04224.1| hypothetical protein HMPREF9488_02507 [Coprobacillus sp. 29_1] Length = 379 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 41/158 (25%), Positives = 74/158 (46%), Gaps = 21/158 (13%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +L+ YCG G +++A +V+ VE+ + + + A N N +NN+ + EF + Sbjct: 232 VLDTYCGIGTIGMMIASRVSQVIGVELNQEAYKDAVNNAKMNKINNIHFYNQDATEFMKD 291 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY-----PHILYISCNPDS 327 M +R + + +DPPR+G +T VQA ++Y+SC+P + Sbjct: 292 MANQRT------------QIDCVIMDPPRAG---STKEFVQAIHILQPQQVIYVSCDPVT 336 Query: 328 LCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 RDL + + + FD FP T+ +E + L + Sbjct: 337 QARDLQWFWDIGYQTQDIYPFDMFPQTQAIETVICLTK 374 >gi|56963072|ref|YP_174799.1| S-adenosylmethionine (SAM)-dependent methyltransferase [Bacillus clausii KSM-K16] gi|56909311|dbj|BAD63838.1| S-adenosylmethionine (SAM)-dependent methyltransferase [Bacillus clausii KSM-K16] Length = 471 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 44/157 (28%), Positives = 75/157 (47%), Gaps = 17/157 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L++ YCG G L + V ++I + ++E AR N + + V V + K Sbjct: 328 LVDAYCGVGTIGQWLGDQAEEVRGMDITEEAIENARSNAKKHGIAAVYEVGPAEKWLPLW 387 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330 +++ ++ I VDPPRSG D + M++A P I+Y+SCNP +L + Sbjct: 388 LKQ-------------GFKPDVILVDPPRSGCDRQLLKSMLKAKPKRIVYVSCNPSTLAK 434 Query: 331 DLS--ILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 D+ I + + I+ + D FP+T +E L+ K Sbjct: 435 DVQHLIEAGGYAIQSIQPVDMFPWTAQVESVTELILK 471 >gi|307709324|ref|ZP_07645782.1| RNA methyltransferase [Streptococcus mitis SK564] gi|307619907|gb|EFN99025.1| RNA methyltransferase [Streptococcus mitis SK564] Length = 456 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 46/158 (29%), Positives = 77/158 (48%), Gaps = 15/158 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ Y G G L +A+H V VE+ +VE ++ N NH++N V +++ A Sbjct: 308 VIDAYSGIGTIGLSVAKHVKEVYGVEVIPEAVENSKKNAQLNHISNAHYVCDTAE---NA 364 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV--GMVQAYPHILYISCNPDSLCR 330 M+ N LK+ + I VDPPR GL ++ + I YISCN ++ R Sbjct: 365 MK-----NWLKE----GIQPSLILVDPPRKGLIESFIKASTQTGADRIAYISCNVATMAR 415 Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVRKPS 367 D+ + + ++++ D FP T H+E LL R + Sbjct: 416 DIKLYQELGYELKKVQPVDLFPQTHHVEAVSLLFRSET 453 >gi|313892229|ref|ZP_07825822.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Dialister microaerophilus UPII 345-E] gi|313119367|gb|EFR42566.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Dialister microaerophilus UPII 345-E] Length = 545 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 44/159 (27%), Positives = 78/159 (49%), Gaps = 17/159 (10%) Query: 211 GD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268 GD +++ YCG G SL LA+ V+ +EI K ++E A+ N N + NV+ + Sbjct: 305 GDETVIDAYCGTGTISLYLAQKAKHVIGIEIIKDAIENAKENAKRNKIKNVEFHAADVAK 364 Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYPH-ILYISCNPD 326 + L ++ + + + +DP R+G D+ + + + P I+Y+SCN Sbjct: 365 Y------------LPELAKKGIKAEVMVLDPVRAGCDEKVIEAIGKINPERIVYVSCNVA 412 Query: 327 SLCRDLSILSTT-HTIERLALFDQFPYTRHMECGVLLVR 364 + RD+ LS + + ++ D FP T H+E LL + Sbjct: 413 TQARDIERLSKKGYKLIKIQPIDMFPQTTHVETVALLYK 451 >gi|255099546|ref|ZP_05328523.1| putative tRNA (Uracil-5-)-methyltransferase [Clostridium difficile QCD-63q42] Length = 451 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 55/220 (25%), Positives = 94/220 (42%), Gaps = 31/220 (14%) Query: 154 RANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD- 212 + ++ ++ RDY+ E + L ++ SF Q N E + + + GD Sbjct: 255 QCDELRVLYGRDYIQEEIL----GLKFKISPFSFFQTNT----KGAEVLYSIARDFIGDY 306 Query: 213 ----LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268 + +LY G G+ V+A +V +EI + +V AA N N + N + + + Sbjct: 307 NDKVVFDLYSGTGSIGQVMAGAAKKVYGIEIVEEAVVAANENAKLNGLTNCEFIAGDVAK 366 Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPD 326 + ++ + + I VDPPR G+ + + + I+YISCNP Sbjct: 367 VVKDLKDKPDL---------------IIVDPPRPGIHKDAIRDICGFGAKEIVYISCNPK 411 Query: 327 SLCRDL-SILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 SL DL + I+ + D FP T H E V L+R+ Sbjct: 412 SLVVDLVDFKGYGYEIKMVKCMDMFPNTPHCETVVKLIRE 451 >gi|297561816|ref|YP_003680790.1| RNA methyltransferase, TrmA family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296846264|gb|ADH68284.1| RNA methyltransferase, TrmA family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 428 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 58/196 (29%), Positives = 85/196 (43%), Gaps = 25/196 (12%) Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLA 228 R V GR YR F Q + + VL A + G+ L+LYCG G F+ LA Sbjct: 235 REKVDGRE--YRVSAGGFWQVHPAAAEVLTAAVLDALEPKPGETALDLYCGAGLFTGALA 292 Query: 229 RHFD---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285 R + VE +V ARYN+ +++ VR+ + +R Sbjct: 293 AAVGPEGRAMGVESGAEAVRDARYNL-----KDMEQVRVEQGDVAAQLR----------- 336 Query: 286 DIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCRDL-SILSTTHTIE 342 + R + +DPPR+G V + P + Y+SC+P +L RDL S + + Sbjct: 337 EWADVRADVVVLDPPRAGAGAEVVRSLTGTRPRRVAYVSCDPATLARDLASFERADYRLV 396 Query: 343 RLALFDQFPYTRHMEC 358 L FD FP T H+EC Sbjct: 397 DLRAFDAFPMTHHVEC 412 >gi|296454344|ref|YP_003661487.1| (uracil-5)-methyltransferase [Bifidobacterium longum subsp. longum JDM301] gi|296183775|gb|ADH00657.1| (Uracil-5)-methyltransferase [Bifidobacterium longum subsp. longum JDM301] Length = 422 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 56/208 (26%), Positives = 97/208 (46%), Gaps = 25/208 (12%) Query: 169 ERLTVAGRTLIYRQIENSF----TQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNF 223 E++T+ G T Y+ N F Q + H++ V + ++ +LY G+G F Sbjct: 228 EQVTINGTTFDYQVDANGFWQVHRQAPIALGTHVINLVNGQLQSAADAVIWDLYSGSGLF 287 Query: 224 SLVLARHFD---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 +L LA R+L+VE A+ +V+ A+ N+ A +N+V R + + Sbjct: 288 TLPLATMTGERTRMLSVEGARVAVKNAQRNLRAMDLNDVDA-------------RAGDVS 334 Query: 281 RLKD-IDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSIL-S 336 R D + H + + +DPPR+G + A ++YI+C+P SL RD + L Sbjct: 335 RTLDHVPAHLAKPNVVVLDPPRAGARAKVCRQIAAAGASSVVYIACDPTSLARDTATLIG 394 Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVR 364 + ++ + FD +P T H+E L R Sbjct: 395 EGYELKDIRAFDIYPMTHHVETVALFTR 422 >gi|117620248|ref|YP_858149.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117561655|gb|ABK38603.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 450 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 38/148 (25%), Positives = 73/148 (49%), Gaps = 15/148 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + ++YCG G SL LA +V+ +E + ++ AR N A N + + + +++ Sbjct: 304 VFDIYCGIGTISLFLAGKAAKVVGIESVESAISDARRNAALNGIEHTEFHVGKAEQL--- 360 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCR 330 + ++ + +DPPR G D A + +V P ++Y+SCNP +L R Sbjct: 361 ---------MPELHAQGVTADVVVMDPPRKGCDKAVLQTLVAMAPRRLVYVSCNPQTLAR 411 Query: 331 DLS-ILSTTHTIERLALFDQFPYTRHME 357 DL+ ++ ++ + D FP++ H+E Sbjct: 412 DLAWLVKQGFVLDEVQPVDMFPHSMHVE 439 >gi|309811689|ref|ZP_07705467.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA [Dermacoccus sp. Ellin185] gi|308434301|gb|EFP58155.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA [Dermacoccus sp. Ellin185] Length = 427 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 56/181 (30%), Positives = 85/181 (46%), Gaps = 27/181 (14%) Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFD---RVLAVEIAK 241 F Q + G L+ V+ T G+ L+LYCG G F+ LA RV+ VE Sbjct: 258 GFWQVHPGAAATFLDAVIDETDPQPGESALDLYCGVGLFTRALADLVGPDGRVVGVEADA 317 Query: 242 PSVEAARYNIA-ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300 +V+ AR N+ A HV+ V T + + R + R + +DPP Sbjct: 318 DAVDHARTNMGGARHVDLV----------TSPVEKAR---------LPLERADVVVLDPP 358 Query: 301 RSGLD-DATVGMVQAYPHIL-YISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHME 357 R+G D +V P ++ Y++C+P +L RDL +S + + L FD FP T+H+E Sbjct: 359 RAGAGRDVVATIVGLAPRVVTYVACDPAALARDLGYFVSHGYELTNLRGFDAFPMTQHVE 418 Query: 358 C 358 C Sbjct: 419 C 419 >gi|306833840|ref|ZP_07466965.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus bovis ATCC 700338] gi|304424034|gb|EFM27175.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus bovis ATCC 700338] Length = 456 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 45/157 (28%), Positives = 72/157 (45%), Gaps = 19/157 (12%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ Y G G L A++ V VE+ + +VE A+ N A N + N + ++ Sbjct: 308 VIDAYSGIGTIGLSFAKNVKAVYGVEVIEEAVEDAKRNAALNSITNAHYIADPAEHAMAT 367 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD----ATVGMVQAYPHILYISCNPDSL 328 ++ + I VDPPR GL + A+V M I YISCNP ++ Sbjct: 368 WSKD------------GIKPSVILVDPPRKGLTENFIKASVAMQPE--KITYISCNPATM 413 Query: 329 CRDLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364 RD+ + + + ++ D FP T H+E LLVR Sbjct: 414 ARDIKLYQELGYKLIKVQPVDLFPNTHHVEAVSLLVR 450 >gi|198284531|ref|YP_002220852.1| TrmA family RNA methyltransferase [Acidithiobacillus ferrooxidans ATCC 53993] gi|218667266|ref|YP_002427198.1| 23S rRNA (uracil-5-)-methyltransferase [Acidithiobacillus ferrooxidans ATCC 23270] gi|254766918|sp|B7J921|RUMA_ACIF2 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|254766919|sp|B5EPA4|RUMA_ACIF5 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|198249052|gb|ACH84645.1| RNA methyltransferase, TrmA family [Acidithiobacillus ferrooxidans ATCC 53993] gi|218519479|gb|ACK80065.1| 23S rRNA (uracil-5-)-methyltransferase [Acidithiobacillus ferrooxidans ATCC 23270] Length = 440 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 57/181 (31%), Positives = 87/181 (48%), Gaps = 14/181 (7%) Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 FTQ N N M+ +A + G+ +L+L+CG GNF+L +AR +VL +E V Sbjct: 271 FTQVNQAANQVMVRRAMALLQPQPGEHILDLFCGLGNFTLPIARLGAQVLGIEGDARLVA 330 Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD 305 A N AAN + + R + + TQA R +F ID + +DPPRSG Sbjct: 331 LAAENAAANGLADK--ARYAVADLTQA--RMEDFAPAGAID-------KMLIDPPRSGAI 379 Query: 306 DATVGMVQAYPHILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTRHMECGVLLV 363 + + ++Y+SCNP +L RD L + + + + FP+T H+E L Sbjct: 380 EVLRSLTPGVRRLVYVSCNPATLARDAEYLVHERGYRLRAAGVVNMFPHTAHVESIALFE 439 Query: 364 R 364 R Sbjct: 440 R 440 >gi|254413176|ref|ZP_05026947.1| 23S rRNA (uracil-5-)-methyltransferase [Microcoleus chthonoplastes PCC 7420] gi|196179796|gb|EDX74789.1| 23S rRNA (uracil-5-)-methyltransferase [Microcoleus chthonoplastes PCC 7420] Length = 468 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 44/157 (28%), Positives = 72/157 (45%), Gaps = 19/157 (12%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L++ YCG G F+L LA+ + L +E+ +VE A+ N N + NVK + + Sbjct: 325 LVDAYCGIGTFTLPLAKQVHQALGIEVQGTAVEQAQINAQINGITNVKFETGTVETLLP- 383 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330 + DI + +DPPR G + + ++ P ++YISC P +L R Sbjct: 384 -----QLGITPDI---------VLLDPPRQGCNPQVIDTLLSVMPQRLVYISCKPATLAR 429 Query: 331 DLSILS--TTHTIERLALFDQFPYTRHMECGVLLVRK 365 DL L + + + D F T H+EC L ++ Sbjct: 430 DLKRLCHLGGYQLTHVQPADFFSQTPHVECAAFLEKQ 466 >gi|260685752|ref|YP_003216885.1| putative tRNA (Uracil-5-)-methyltransferase [Clostridium difficile R20291] gi|260211768|emb|CBE02120.1| putative tRNA (Uracil-5-)-methyltransferase [Clostridium difficile R20291] Length = 453 Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 55/220 (25%), Positives = 94/220 (42%), Gaps = 31/220 (14%) Query: 154 RANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD- 212 + ++ ++ RDY+ E + L ++ SF Q N E + + + GD Sbjct: 257 QCDELRVLYGRDYIQEEIL----GLKFKISPFSFFQTNT----KGAEVLYSIARDFIGDY 308 Query: 213 ----LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268 + +LY G G+ V+A +V +EI + +V AA N N + N + + + Sbjct: 309 NDKVVFDLYSGTGSIGQVMAGAAKKVYGIEIVEEAVVAANENAKLNGLTNCEFIAGDVAK 368 Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPD 326 + ++ + + I VDPPR G+ + + + I+YISCNP Sbjct: 369 VVKDLKDKPDL---------------IIVDPPRPGIHKDAIRDICGFGAKEIVYISCNPK 413 Query: 327 SLCRDL-SILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 SL DL + I+ + D FP T H E V L+R+ Sbjct: 414 SLVVDLVDFKGYGYEIKMVKCMDMFPNTPHCETVVKLIRE 453 >gi|269125957|ref|YP_003299327.1| deoxyribonuclease/rho motif-related TRAM [Thermomonospora curvata DSM 43183] gi|268310915|gb|ACY97289.1| deoxyribonuclease/rho motif-related TRAM [Thermomonospora curvata DSM 43183] Length = 449 Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 60/197 (30%), Positives = 91/197 (46%), Gaps = 17/197 (8%) Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLA 228 R AGR +++ + F Q + G + + VLAA + G++ L+LYCG G F+ VL Sbjct: 253 REVAAGR--LWQVSGSGFWQVHPGAAQTLADAVLAALEPRPGEIALDLYCGVGLFAGVLG 310 Query: 229 RHFDR---VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285 V+ VE +V AR+N+ + +V I R +E E EF R + Sbjct: 311 ERVGPEGLVVGVEADPQAVRDARFNL--RDLPHVSIERGRVEEVIA----ELEFGRSRPG 364 Query: 286 DI--HSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTH-T 340 R + +DPPR+G V + A I Y+SC+ +L RDL+ Sbjct: 365 GAREEGVRADVVVLDPPRTGAGRRVVERIAELAGRKIAYVSCDTATLARDLAYFGERGWR 424 Query: 341 IERLALFDQFPYTRHME 357 ++ L FD FP T H+E Sbjct: 425 LQSLRAFDAFPMTHHVE 441 >gi|330828283|ref|YP_004391235.1| 23S rRNA (Uracil-5-)-methyltransferase RumA [Aeromonas veronii B565] gi|328803419|gb|AEB48618.1| 23S rRNA (Uracil-5-)-methyltransferase RumA [Aeromonas veronii B565] Length = 450 Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 38/148 (25%), Positives = 73/148 (49%), Gaps = 15/148 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + ++YCG G SL LA +V+ +E + ++ AR N A N + + + +++ Sbjct: 304 VFDIYCGIGTISLFLAGKAAKVVGIESVESAISDARRNAALNGIEHTEFHVGKAEQL--- 360 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCR 330 + ++ + +DPPR G D A + +V P ++Y+SCNP +L R Sbjct: 361 ---------MPELHAQGVTADVVVMDPPRKGCDKAVLQTLVAMAPRRLVYVSCNPQTLAR 411 Query: 331 DLS-ILSTTHTIERLALFDQFPYTRHME 357 DL+ ++ ++ + D FP++ H+E Sbjct: 412 DLAWLVKQGFVLDEVQPVDMFPHSMHVE 439 >gi|256829391|ref|YP_003158119.1| deoxyribonuclease/rho motif-related TRAM [Desulfomicrobium baculatum DSM 4028] gi|256578567|gb|ACU89703.1| deoxyribonuclease/rho motif-related TRAM [Desulfomicrobium baculatum DSM 4028] Length = 389 Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 56/215 (26%), Positives = 99/215 (46%), Gaps = 20/215 (9%) Query: 156 NKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLE 215 + + +RD V + L + ++F Q N +N H++ + A G + + + Sbjct: 190 DTGQTATERDNVLLPFSFPDFGLTLQLPPSTFFQANWALNQHLVRSTVDALHGFE-RIAD 248 Query: 216 LYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA-MR 274 L+ G GNF+L LA VLAVE + P+V+ + N + + S F A + Sbjct: 249 LFSGAGNFALPLASRGKSVLAVEGSAPAVDTG--------MRNADRLALKSVTFRDANLA 300 Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRS---GLDDATVGMVQAYPHILYISCNPDSLCRD 331 + + ++D + + +DPPR+ G+ +GM + ++SC+ + RD Sbjct: 301 KPAAWKMVED-----FAPRAAILDPPRTGAKGIGRTLLGM-PGLERLAWVSCDVVNTVRD 354 Query: 332 L-SILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 +L+ +I L LFD FP T HME ++L R Sbjct: 355 AKPLLAAGWSISSLTLFDMFPGTWHMEVLMILDRP 389 >gi|260682153|ref|YP_003213438.1| putative tRNA (Uracil-5-)-methyltransferase [Clostridium difficile CD196] gi|260208316|emb|CBA60769.1| putative tRNA (Uracil-5-)-methyltransferase [Clostridium difficile CD196] Length = 456 Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 55/220 (25%), Positives = 94/220 (42%), Gaps = 31/220 (14%) Query: 154 RANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD- 212 + ++ ++ RDY+ E + L ++ SF Q N E + + + GD Sbjct: 260 QCDELRVLYGRDYIQEEIL----GLKFKISPFSFFQTNT----KGAEVLYSIARDFIGDY 311 Query: 213 ----LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268 + +LY G G+ V+A +V +EI + +V AA N N + N + + + Sbjct: 312 NDKVVFDLYSGTGSIGQVMAGAAKKVYGIEIVEEAVVAANENAKLNGLTNCEFIAGDVAK 371 Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPD 326 + ++ + + I VDPPR G+ + + + I+YISCNP Sbjct: 372 VVKDLKDKPDL---------------IIVDPPRPGIHKDAIRDICGFGAKEIVYISCNPK 416 Query: 327 SLCRDL-SILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 SL DL + I+ + D FP T H E V L+R+ Sbjct: 417 SLVVDLVDFKGYGYEIKMVKCMDMFPNTPHCETVVKLIRE 456 >gi|222528478|ref|YP_002572360.1| TrmA family RNA methyltransferase [Caldicellulosiruptor bescii DSM 6725] gi|222455325|gb|ACM59587.1| RNA methyltransferase, TrmA family [Caldicellulosiruptor bescii DSM 6725] Length = 451 Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 58/209 (27%), Positives = 103/209 (49%), Gaps = 24/209 (11%) Query: 168 DERLTVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYC 218 +E + + G + I +I N SF Q N+ + V+ + I +++ ++Y Sbjct: 252 EEDILIWGSSTIKDKIGNLTFEISPKSFFQVNSMQTEVLYSQVVKYLRNIDAEIVFDVYS 311 Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278 G G S+ +A +V A+E+ + +VE A+ N N+++N++ + S+ E E Sbjct: 312 GIGTISMFIAPFCKKVYAIELVRDAVEDAKKNSKNNNISNIEFICGSA---------EIE 362 Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL- 335 +L I + + +DPPRSG + + + P+I+Y+SCNP +L RD SIL Sbjct: 363 IPKLLKSGIVP---QAVILDPPRSGCEKELLESLIEHKIPNIIYVSCNPSTLARDSSILC 419 Query: 336 STTHTIERLALFDQFPYTRHMECGVLLVR 364 S + + + D FP T H+EC L + Sbjct: 420 SNGYEVVEVQPVDMFPQTFHVECVALFKK 448 >gi|254974048|ref|ZP_05270520.1| putative tRNA (Uracil-5-)-methyltransferase [Clostridium difficile QCD-66c26] gi|255091449|ref|ZP_05320927.1| putative tRNA (Uracil-5-)-methyltransferase [Clostridium difficile CIP 107932] gi|255313180|ref|ZP_05354763.1| putative tRNA (Uracil-5-)-methyltransferase [Clostridium difficile QCD-76w55] gi|255515867|ref|ZP_05383543.1| putative tRNA (Uracil-5-)-methyltransferase [Clostridium difficile QCD-97b34] gi|255648960|ref|ZP_05395862.1| putative tRNA (Uracil-5-)-methyltransferase [Clostridium difficile QCD-37x79] gi|306519078|ref|ZP_07405425.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium difficile QCD-32g58] Length = 451 Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 55/220 (25%), Positives = 94/220 (42%), Gaps = 31/220 (14%) Query: 154 RANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD- 212 + ++ ++ RDY+ E + L ++ SF Q N E + + + GD Sbjct: 255 QCDELRVLYGRDYIQEEIL----GLKFKISPFSFFQTNT----KGAEVLYSIARDFIGDY 306 Query: 213 ----LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268 + +LY G G+ V+A +V +EI + +V AA N N + N + + + Sbjct: 307 NDKVVFDLYSGTGSIGQVMAGAAKKVYGIEIVEEAVVAANENAKLNGLTNCEFIAGDVAK 366 Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPD 326 + ++ + + I VDPPR G+ + + + I+YISCNP Sbjct: 367 VVKDLKDKPDL---------------IIVDPPRPGIHKDAIRDICGFGAKEIVYISCNPK 411 Query: 327 SLCRDL-SILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 SL DL + I+ + D FP T H E V L+R+ Sbjct: 412 SLVVDLVDFKGYGYEIKMVKCMDMFPNTPHCETVVKLIRE 451 >gi|319744646|gb|EFV96993.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus agalactiae ATCC 13813] Length = 468 Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 44/155 (28%), Positives = 69/155 (44%), Gaps = 15/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ Y G G L +A+ V VE+ + +V A+ N N + N V S++ Sbjct: 323 VIDAYSGIGTIGLSVAKQVKHVYGVEVVEKAVSDAKENATRNGITNSTYVADSAENAMAK 382 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV--GMVQAYPHILYISCNPDSLCR 330 +E + I VDPPR GL ++ V I YISCN ++ R Sbjct: 383 WLKE------------GIKPTVIMVDPPRKGLTESFVYSAAQTKADKITYISCNSATMAR 430 Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364 D+ + + + ++ D FP T H+EC VLL R Sbjct: 431 DIKLFEELGYHLVKIQPVDLFPMTHHVECVVLLQR 465 >gi|114048697|ref|YP_739247.1| 23S rRNA methyluridine methyltransferase [Shewanella sp. MR-7] gi|122944423|sp|Q0HRR5|RUMB_SHESR RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName: Full=23S rRNA(M-5-U747)-methyltransferase gi|113890139|gb|ABI44190.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Shewanella sp. MR-7] Length = 384 Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 48/186 (25%), Positives = 83/186 (44%), Gaps = 23/186 (12%) Query: 185 NSFTQPNAGINVHML----EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240 SF Q N + + EWV L +L+CG G F L A + +EI Sbjct: 215 KSFFQTNPQVAAKLYQTAREWV---ADFAPASLWDLFCGVGGFGLHCAAKDIPLTGIEIE 271 Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300 ++ A+ + ++ V+ + + S +F + D + + I V+PP Sbjct: 272 AEAIACAKMSAQLMGLDKVQFMALDSTDFAKG-------------DAAQTKPELIIVNPP 318 Query: 301 RSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMEC 358 R G+ ++ + + ILY SCNP +L +DL + + + ++ LFD FP++ H E Sbjct: 319 RRGIGESLCHSLSEFAPKAILYSSCNPKTLAKDLGHIR-GYRLTKVQLFDLFPHSDHFEV 377 Query: 359 GVLLVR 364 LLV+ Sbjct: 378 LALLVK 383 >gi|77411137|ref|ZP_00787490.1| RNA methyltransferase, TrmA family [Streptococcus agalactiae CJB111] gi|77162860|gb|EAO73818.1| RNA methyltransferase, TrmA family [Streptococcus agalactiae CJB111] Length = 451 Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 43/155 (27%), Positives = 69/155 (44%), Gaps = 15/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ Y G G L +A+ V VE+ + +V A+ N N + N V S++ Sbjct: 308 VIDAYSGIGTIGLSVAKQVKHVYGVEVVEKAVSDAKENATRNGITNSTYVADSAENAMAK 367 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV--GMVQAYPHILYISCNPDSLCR 330 +E + I VDPPR GL ++ V I YISCN ++ R Sbjct: 368 WLKE------------GIKPTVIMVDPPRKGLTESFVYSAAQTKADKITYISCNSATMAR 415 Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364 D+ + + + ++ D FP T H+EC LLV+ Sbjct: 416 DIKLFEELGYHLVKIQPVDLFPMTHHVECVALLVK 450 >gi|257439482|ref|ZP_05615237.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Faecalibacterium prausnitzii A2-165] gi|257198141|gb|EEU96425.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Faecalibacterium prausnitzii A2-165] Length = 259 Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 47/151 (31%), Positives = 73/151 (48%), Gaps = 12/151 (7%) Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276 YCG G L +A H ++ VEI ++E+A+ AN + S+ F Sbjct: 116 YCGMGTIGLSMADHCRELIGVEIVPEAIESAK----ANAARMGDAIAAKSRFFCA--DAG 169 Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCRDLSI 334 + ++L +H + +DPPR G D+AT+ +V P ++Y+SCNP + RD Sbjct: 170 KAASQLAAEGLHP---DVVMLDPPRKGCDEATLSAVVTMSPRRVVYVSCNPSTAARDAKW 226 Query: 335 LST-THTIERLALFDQFPYTRHMECGVLLVR 364 L + E++ D FP TRH+E V L R Sbjct: 227 LEEHGYRAEKVQPVDLFPRTRHVEAIVSLQR 257 >gi|157150892|ref|YP_001450645.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus gordonii str. Challis substr. CH1] gi|157075686|gb|ABV10369.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus gordonii str. Challis substr. CH1] Length = 456 Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 47/155 (30%), Positives = 76/155 (49%), Gaps = 15/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ Y G G L +A+ V VE+ +VE ++ N A N + N V +++ A Sbjct: 308 VIDAYSGIGTIGLSVAKLVKEVYGVEVIPEAVENSKKNAAINGITNAHYVCDTAE---NA 364 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV--GMVQAYPHILYISCNPDSLCR 330 M+ N LK+ + IFVDPPR GL ++ + I YISCN ++ R Sbjct: 365 MK-----NWLKE----GIQPTVIFVDPPRKGLTESFIKASTQTGADRIAYISCNVATMAR 415 Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364 D+ + + ++++ D FP T H+E LLVR Sbjct: 416 DIKLYQELGYELKKVQPVDLFPQTHHVEVVSLLVR 450 >gi|327474491|gb|EGF19896.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis SK408] Length = 456 Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 42/157 (26%), Positives = 69/157 (43%), Gaps = 14/157 (8%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L++ YCG G A+ + ++I ++E A+ N +N +++E Sbjct: 308 LIDAYCGVGTIGFAFAKKVKSLRGMDIIPEAIEDAKRNAKRMGFDNTLYEAGTAEEIIPR 367 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCR 330 E YR + VDPPR+GLDD + + Y ++Y+SCN +L R Sbjct: 368 WYAE------------GYRANALIVDPPRTGLDDKLLETIVHYAPEKMVYVSCNVSTLAR 415 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRKPS 367 DL L + + + D FP+T E V L ++ S Sbjct: 416 DLVKLCQVYDVHYIQSVDMFPHTARTEAVVKLSKRDS 452 >gi|331696878|ref|YP_004333117.1| deoxyribonuclease/rho motif-related TRAM [Pseudonocardia dioxanivorans CB1190] gi|326951567|gb|AEA25264.1| deoxyribonuclease/rho motif-related TRAM [Pseudonocardia dioxanivorans CB1190] Length = 398 Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 48/151 (31%), Positives = 73/151 (48%), Gaps = 18/151 (11%) Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274 +LY G G F+ VLA R AV + VE+A +A + +++ + R Sbjct: 261 DLYGGAGLFAAVLAEQVGRDGAVTV----VESAAGAVADGEAALADLPQVA----WEVGR 312 Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDL 332 ER L D D+ + DPPRSGL A V + A +++++C+P +L RD+ Sbjct: 313 VERVLPALADPDV-------VVADPPRSGLGRALVEAICARGPRRVVHVACDPAALGRDV 365 Query: 333 SILST-THTIERLALFDQFPYTRHMECGVLL 362 + + + + L FD FP T HMEC LL Sbjct: 366 GLFAALGYRLTALRAFDAFPMTHHMECVALL 396 >gi|22536806|ref|NP_687657.1| RNA methyltransferase [Streptococcus agalactiae 2603V/R] gi|25010677|ref|NP_735072.1| hypothetical protein gbs0613 [Streptococcus agalactiae NEM316] gi|76788448|ref|YP_329346.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus agalactiae A909] gi|76799166|ref|ZP_00781348.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus agalactiae 18RS21] gi|77407748|ref|ZP_00784502.1| RNA methyltransferase, TrmA family [Streptococcus agalactiae COH1] gi|50401576|sp|Q8E0T7|Y633_STRA5 RecName: Full=Uncharacterized RNA methyltransferase SAG0633 gi|50401578|sp|Q8E6F5|Y613_STRA3 RecName: Full=Uncharacterized RNA methyltransferase gbs0613 gi|22533652|gb|AAM99529.1|AE014220_1 RNA methyltransferase, TrmA family [Streptococcus agalactiae 2603V/R] gi|23095031|emb|CAD46257.1| Unknown [Streptococcus agalactiae NEM316] gi|76563505|gb|ABA46089.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus agalactiae A909] gi|76585475|gb|EAO62051.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus agalactiae 18RS21] gi|77173614|gb|EAO76729.1| RNA methyltransferase, TrmA family [Streptococcus agalactiae COH1] Length = 451 Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 43/155 (27%), Positives = 69/155 (44%), Gaps = 15/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ Y G G L +A+ V VE+ + +V A+ N N + N V S++ Sbjct: 308 VIDAYSGIGTIGLSVAKQVKHVYGVEVVEKAVSDAKENATRNGITNSTYVADSAENAMAK 367 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV--GMVQAYPHILYISCNPDSLCR 330 +E + I VDPPR GL ++ V I YISCN ++ R Sbjct: 368 WLKE------------GIKPTVIMVDPPRKGLTESFVYSAAQTKADKITYISCNSATMAR 415 Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364 D+ + + + ++ D FP T H+EC LLV+ Sbjct: 416 DIKLFEELGYHLVKIQPVDLFPMTHHVECVALLVK 450 >gi|328948092|ref|YP_004365429.1| (Uracil-5)-methyltransferase [Treponema succinifaciens DSM 2489] gi|328448416|gb|AEB14132.1| (Uracil-5)-methyltransferase [Treponema succinifaciens DSM 2489] Length = 405 Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 48/177 (27%), Positives = 84/177 (47%), Gaps = 34/177 (19%) Query: 195 NVHMLEWVLA-ATKGIQG-DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIA 252 N+ +LE + T GI G ++L++Y G G FS+ L F+ V+ VE K +V A N+A Sbjct: 242 NLEVLEKSIPLITGGISGKNVLDMYSGAGTFSVFLTDSFENVILVEHNKSAVVYAEQNLA 301 Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY---------RFKTIFVDPPRSG 303 ++ F D+ + + F + +DPPRSG Sbjct: 302 G--------------------KKHESFGVSGDVWVKYHAETCIKECGNFDAVVIDPPRSG 341 Query: 304 LDDATVGMVQ--AYPHILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHME 357 ++ + +Q P I +SC+P + RD +++++ + +E+L L D +P T H+E Sbjct: 342 MEKSVQKWLQNSKIPQIRSLSCDPSTHARDAKALINSGYRLEKLFLLDFYPQTGHIE 398 >gi|291483116|dbj|BAI84191.1| hypothetical protein BSNT_01153 [Bacillus subtilis subsp. natto BEST195] Length = 123 Score = 67.0 bits (162), Expect = 4e-09, Method: Composition-based stats. Identities = 41/133 (30%), Positives = 64/133 (48%), Gaps = 15/133 (11%) Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295 VEI ++E A+ N N + N + ++ E T+ Sbjct: 3 GVEIVPEAIEDAKRNAELNGITNAEFAVGEAETVIPKWYEE------------GITADTL 50 Query: 296 FVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCRDLSILSTT-HTIERLALFDQFPY 352 VDPPR G D+A + +V+ P ++Y+SCNP +L RDL +L + + D FP+ Sbjct: 51 VVDPPRKGCDEALLRTIVEMKPKRVVYVSCNPGTLARDLRVLEDGGYATREVQPVDMFPH 110 Query: 353 TRHMECGVLLVRK 365 T H+EC VL+V+K Sbjct: 111 TNHVECCVLIVKK 123 >gi|261821243|ref|YP_003259349.1| 23S rRNA methyluridine methyltransferase [Pectobacterium wasabiae WPP163] gi|261605256|gb|ACX87742.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Pectobacterium wasabiae WPP163] Length = 375 Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 44/155 (28%), Positives = 74/155 (47%), Gaps = 18/155 (11%) Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271 + +L+CG G F L A R+ +EI+ ++ AR + + V+ + S +F Sbjct: 236 SMWDLFCGVGGFGLHCASPEMRLTGIEISAEAIACARRSAEQLGLKQVEFQALDSTQFAT 295 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLC 329 A + + D+ + V+PPR G+ + A +ILY SCN +S+ Sbjct: 296 AK------SEIPDL---------VLVNPPRRGIGSELCAYLSRMAPDYILYSSCNAESMA 340 Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 +D++ L+ + R+ LFD FP+T H E LL R Sbjct: 341 KDMTELANYRAL-RVQLFDMFPHTAHYEVLTLLKR 374 >gi|325926989|ref|ZP_08188264.1| 23S rRNA m(5)U-1939 methyltransferase family [Xanthomonas perforans 91-118] gi|325542648|gb|EGD14115.1| 23S rRNA m(5)U-1939 methyltransferase family [Xanthomonas perforans 91-118] Length = 444 Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 57/192 (29%), Positives = 91/192 (47%), Gaps = 18/192 (9%) Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLA 236 L +R ++ F Q NA +N M+ +A + D +L+L+CG GNF+L LAR V+ Sbjct: 267 LAFRPLD--FIQVNASLNQKMIAHAVALLEAKPDDRVLDLFCGLGNFTLPLARVVREVVG 324 Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296 VE V A+ N N ++N + + + TQ R + F + Sbjct: 325 VEGDAGLVARAKENAQRNGLDNAQ---FHAADLTQDQRSAPWMRQ---------GFDKLL 372 Query: 297 VDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDLSILSTTH--TIERLALFDQFPYT 353 +DPPRSG + + ++ + I+Y+SC+P SL RD L T+ D FP+T Sbjct: 373 LDPPRSGALEVLQQLPLKTFDRIVYVSCHPGSLARDAGYLVNEQGFTLVSAGAMDMFPHT 432 Query: 354 RHMECGVLLVRK 365 H+E + R+ Sbjct: 433 AHVESIAVFERR 444 >gi|183222798|ref|YP_001840794.1| TrmA family RNA methyltransferase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189912829|ref|YP_001964384.1| tRNA (uracil-5-)-methyltransferase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167777505|gb|ABZ95806.1| tRNA (uracil-5-)-methyltransferase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167781220|gb|ABZ99518.1| Putative RNA methyltransferase, TrmA family [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 383 Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 65/228 (28%), Positives = 101/228 (44%), Gaps = 27/228 (11%) Query: 143 HARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWV 202 H +K+ + R +K KI + D + + V G L + F Q IN +LE Sbjct: 176 HNQKFGRSISLRLSKEKI-VQYDLEETEIEVLGTQL--KVPAKGFFQ----INQFLLETW 228 Query: 203 LAATKGI---QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259 L K + +LEL+CG G + L + +E S++ A N N N+ Sbjct: 229 LKKMKSLLPESSKVLELFCGCGTIGIALREKITSLYGIESHDNSIQYAIENAKRNGTNSY 288 Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPHI 318 + V T+ + + LK ++ V+PPRSGL + + P I Sbjct: 289 QYV-------TKDLYKGYLPKELK-------QYAIWIVNPPRSGLSKGIIDSTTKLKPKI 334 Query: 319 L-YISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364 + Y SCNP +L RDL +L + + ++ ++LFD FP T H E V L R Sbjct: 335 MIYSSCNPSTLQRDLRLLEAVGYRMDSMSLFDFFPRTNHYEVLVRLKR 382 >gi|297614535|gb|ADI48566.1| putative 23S rRNA 5-methyluridine methyltransferase [uncultured bacterium fss6] Length = 328 Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 45/156 (28%), Positives = 72/156 (46%), Gaps = 17/156 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVR-MSSKEFTQ 271 +LELY G+GNFSL +A +V A+E V+ + N VN + +Q Sbjct: 187 VLELYAGSGNFSLPMALAGAQVTAIEGVASMVDQLKANAHRAQVNLAAFCTDLEQSWSSQ 246 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH-ILYISCNPDSLCR 330 A E ++ + +DP R+G A + P I+Y+SC PD+L R Sbjct: 247 AWSNE--------------QYTKVLLDPARAGAPHAIQEVATRQPQRIVYVSCAPDTLAR 292 Query: 331 DLSILSTT-HTIERLALFDQFPYTRHMECGVLLVRK 365 D +L + + +++ + D FP T H+E L R+ Sbjct: 293 DAKVLKESGYQLKQAQVVDMFPQTHHIEVMTLFERE 328 >gi|113969161|ref|YP_732954.1| 23S rRNA methyluridine methyltransferase [Shewanella sp. MR-4] gi|122944083|sp|Q0HM20|RUMB_SHESM RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName: Full=23S rRNA(M-5-U747)-methyltransferase gi|113883845|gb|ABI37897.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Shewanella sp. MR-4] Length = 384 Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 48/186 (25%), Positives = 83/186 (44%), Gaps = 23/186 (12%) Query: 185 NSFTQPNAGINVHML----EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240 SF Q N + + EWV L +L+CG G F L A + +EI Sbjct: 215 KSFFQTNPQVAAKLYQTAREWV---ADFAPASLWDLFCGVGGFGLHCAAKDIPLTGIEIE 271 Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300 ++ A+ + ++ V+ + + S +F + D + + I V+PP Sbjct: 272 AEAIACAKMSAQLMGLDKVQFMALDSTDFAKG-------------DAAQTKPELIIVNPP 318 Query: 301 RSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMEC 358 R G+ ++ + + ILY SCNP +L +DL + + + ++ LFD FP++ H E Sbjct: 319 RRGIGESLCHSLSEFAPKAILYSSCNPKTLAKDLGHIR-GYRLTKVQLFDLFPHSDHFEV 377 Query: 359 GVLLVR 364 LLV+ Sbjct: 378 LALLVK 383 >gi|324009775|gb|EGB78994.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli MS 57-2] Length = 375 Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 44/155 (28%), Positives = 73/155 (47%), Gaps = 18/155 (11%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + +L+CG G F L A ++ +EIA ++ A+ + A + ++ + S +F A Sbjct: 237 MWDLFCGVGGFGLHCATPDMQLTGIEIAPEAIACAKQSAAELGLTRLQFQALDSTQFATA 296 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY-PH-ILYISCNPDSLCR 330 E + V+PPR G+ + PH I+Y SCN ++ + Sbjct: 297 QGEVPEL---------------VLVNPPRRGIGKPLCDYLSTMAPHFIIYSSCNAQTMAK 341 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 D+ L + IER+ LFD FP+T H E LLV++ Sbjct: 342 DIRELPG-YRIERVQLFDMFPHTAHYEVLTLLVKQ 375 >gi|242002062|ref|XP_002435674.1| tRNA uracil-5-methyltransferase, putative [Ixodes scapularis] gi|215499010|gb|EEC08504.1| tRNA uracil-5-methyltransferase, putative [Ixodes scapularis] Length = 494 Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 58/197 (29%), Positives = 88/197 (44%), Gaps = 31/197 (15%) Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWV--LAATKGIQGDLLELYCGNGNFSLVLARHFDR 233 R L +R ++F Q N +LE LAA G + LL++ CG G L +A R Sbjct: 300 RGLSFRVGPDAFFQVNTPAAEVLLEVAEDLAAL-GPRTTLLDVCCGTGTIGLCMAAKVAR 358 Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293 V VE+ K +VE A+ N AN + N V R + + D+ +H+ R Sbjct: 359 VYGVEVCKRAVENAKRNAEANGIGNASFVLG------------RAEDTMHDV-MHTLRDS 405 Query: 294 ---TIFVDPPRSGLDDATVGMVQAYPHI---LYISCNPDSLCRDLSILSTTHT------- 340 VDPPR GL + + ++A I +YISCNP+ ++ L+ + Sbjct: 406 EDMVAVVDPPRQGLHNKVLRALRATASIKRLVYISCNPEGALQNFLDLARPASNNYRGQP 465 Query: 341 --IERLALFDQFPYTRH 355 + + A D FP+T H Sbjct: 466 FVVVKAAPVDMFPHTPH 482 >gi|325687161|gb|EGD29184.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis SK72] Length = 456 Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 42/157 (26%), Positives = 69/157 (43%), Gaps = 14/157 (8%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L++ YCG G A+ + ++I ++E A+ N +N +++E Sbjct: 308 LIDAYCGVGTIGFAFAKKVKSLRGMDIIPEAIEDAKRNAKRMGFDNTLYEAGTAEEIIPR 367 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCR 330 E YR + VDPPR+GLDD + + Y ++Y+SCN +L R Sbjct: 368 WYAE------------GYRADALIVDPPRTGLDDKLLETIVRYSPEKMVYVSCNVSTLAR 415 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRKPS 367 DL L + + + D FP+T E V L ++ S Sbjct: 416 DLVKLCQVYDVHYIQSVDMFPHTARTEAVVKLSKRNS 452 >gi|321471308|gb|EFX82281.1| hypothetical protein DAPPUDRAFT_302582 [Daphnia pulex] Length = 463 Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 43/157 (27%), Positives = 78/157 (49%), Gaps = 22/157 (14%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++L CG G L++ARH V+ VE+++ +VE AR+N A N + N + + +++ + Sbjct: 310 VVDLCCGTGTQGLMVARHSRGVIGVELSRSAVEDARFNAAHNQIQNAEFIAGRAEKLFKH 369 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV---QAYPHILYISCNPDS-- 327 + + E + DI + V+P R G+D + ++ + +++YISC D Sbjct: 370 IMEQLEVS--PDI--------AVIVNPSRGGVDKRIISLLRNNERVRNLVYISCQADGPA 419 Query: 328 ------LC-RDLSILSTTHTIERLALFDQFPYTRHME 357 LC R LS +++ D FP+T H E Sbjct: 420 MNNFVDLCIRGRKTLSEPFVLKKATPIDLFPHTNHCE 456 >gi|320161883|ref|YP_004175108.1| putative 23S rRNA (uracil-5-)-methyltransferase [Anaerolinea thermophila UNI-1] gi|319995737|dbj|BAJ64508.1| putative 23S rRNA (uracil-5-)-methyltransferase [Anaerolinea thermophila UNI-1] Length = 409 Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 51/191 (26%), Positives = 93/191 (48%), Gaps = 23/191 (12%) Query: 171 LTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNFSLVLAR 229 + V GR +R SF Q N + M++ VL+ + G +L++YCG G FS LA Sbjct: 231 MEVLGRP--FRVSAGSFFQVNTPMAEAMVKHVLSLLPAERLGTVLDVYCGVGLFSAFLAP 288 Query: 230 HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHS 289 ++ +E A + + N+ + +NV + ++++ +++ + Sbjct: 289 RTQNLIGIESAPSACDDFAVNL--DEFDNVSLYMGTAEQILPSLQVYPDL---------- 336 Query: 290 YRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLS-ILSTTHTIERLAL 346 I VDPPR+GL+ A + + P ++YISC+P +L RD ++ + + ++ Sbjct: 337 -----IVVDPPRAGLELAALDAILRMNAPTLIYISCDPATLARDTKRLIRGGYRLVQVTP 391 Query: 347 FDQFPYTRHME 357 FD FP T H+E Sbjct: 392 FDLFPQTYHIE 402 >gi|119483398|ref|ZP_01618812.1| 23S rRNA methyltransferase/RumA [Lyngbya sp. PCC 8106] gi|119458165|gb|EAW39287.1| 23S rRNA methyltransferase/RumA [Lyngbya sp. PCC 8106] Length = 466 Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 52/193 (26%), Positives = 85/193 (44%), Gaps = 36/193 (18%) Query: 194 INVHMLEWVLAATK---GIQGD--LLELYCGNGNFSLVLARHFD------------RVLA 236 +N E VL + +QG +++ YCG G +L +A+H +V+ Sbjct: 288 VNTEAAETVLKVIQQQLNLQGSEMIIDAYCGIGTLTLPIAKHIQLLASSPEKNSQKQVIG 347 Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296 +E+ +++ A N N ++NV E + F+ DI I Sbjct: 348 IEVQPSAIQQAYQNAGLNGIDNVTF------ETGTVQKVLSRFSLKPDI---------IL 392 Query: 297 VDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCRDLSILSTT--HTIERLALFDQFPY 352 +DPPR G D + +++ P I+Y+SC P +L RDL IL + + ++ D FP Sbjct: 393 LDPPRKGCDRQVLESLLKLQPTQIVYMSCKPATLARDLKILCENGFYHLTQVQPVDFFPQ 452 Query: 353 TRHMECGVLLVRK 365 T H+EC L K Sbjct: 453 TPHVECVAFLEAK 465 >gi|325672664|ref|ZP_08152360.1| 23S rRNA methyltransferase/RumA [Rhodococcus equi ATCC 33707] gi|325556541|gb|EGD26207.1| 23S rRNA methyltransferase/RumA [Rhodococcus equi ATCC 33707] Length = 422 Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 60/196 (30%), Positives = 89/196 (45%), Gaps = 41/196 (20%) Query: 175 GRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD-- 232 G Y Q+ + QP+AG NV W +LY G G F+ LA Sbjct: 262 GAAETYAQVVGEWAQPSAGDNV----W-------------DLYGGVGVFAATLADQVGVT 304 Query: 233 -RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291 RV +VE +K +V +A ++ VR+ S R ER + L D+ Sbjct: 305 GRVDSVEFSKQAVADGGEALA-----DLLQVRLHS------ARVERALHDLPTPDV---- 349 Query: 292 FKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCRDLSIL-STTHTIERLALFD 348 + +DPPR+G V +V A P I++I C+P S RD+S+ + + +E++ FD Sbjct: 350 ---VVLDPPRTGAGREVVDTIVAAAPQRIVHIGCDPASFARDVSLFRAGGYRLEQVRAFD 406 Query: 349 QFPYTRHMECGVLLVR 364 FP T H+E LL R Sbjct: 407 AFPLTHHVESLALLTR 422 >gi|330718458|ref|ZP_08313058.1| RNA methyltransferase [Leuconostoc fallax KCTC 3537] Length = 496 Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 55/205 (26%), Positives = 92/205 (44%), Gaps = 19/205 (9%) Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGN 222 +DY++E T+ G+T ++ +F Q N E +AA D L++ Y G G Sbjct: 286 QDYIEE--TILGKT--FQLSPRAFMQLNHTQMTVAYETAIAALDLKHADRLVDAYAGVGT 341 Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282 + LA V +E+ +V+ A N N ++N ++++ ++E Sbjct: 342 IGITLADKTGEVRGMEVIPEAVDDAMINAQINGIDNATYEVGTAEQLLPQWQKE------ 395 Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDA-TVGMVQAYPH-ILYISCNPDSLCRDLSILSTTHT 340 + + VDPPR GL+ A +++ P +Y+SCNP +L RDL LS + Sbjct: 396 ------GWIADALVVDPPRPGLEPALKKEILRTKPEKFVYMSCNPSTLARDLVELSKVYR 449 Query: 341 IERLALFDQFPYTRHMECGVLLVRK 365 ++ + D FP T E L RK Sbjct: 450 VDYIQSIDMFPQTPRWEGIAKLTRK 474 >gi|183221783|ref|YP_001839779.1| putative RNA methyltransferase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189911857|ref|YP_001963412.1| SAM-dependent methyltransferase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167776533|gb|ABZ94834.1| SAM-dependent methyltransferase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167780205|gb|ABZ98503.1| Putative RNA methyltransferase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 439 Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 47/183 (25%), Positives = 83/183 (45%), Gaps = 15/183 (8%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 +SF QPN + +L ++ Q +L++L+CGNG FSL+ F V E+ + S+ Sbjct: 268 DSFFQPNPNGFLPILNFIKDLIPQNQINLIDLFCGNGFFSLLYGDLFQHVEGYELTESSI 327 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 + IA+N + + S + T ++ ++ T+ +DPPR+G Sbjct: 328 Q-----IASNLFSETYPSKSHSFQVTNLFLSTETLSKKEN--------ATLILDPPRAGA 374 Query: 305 DDATVGMVQAY--PHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362 ++ + + Y+SCNP S D+S + + L D +P+T H E + Sbjct: 375 GKLVNHWIRDFGPEFVFYVSCNPYSQKEDVSSFLSAYEYVDGILIDPYPHTPHTESVLFF 434 Query: 363 VRK 365 RK Sbjct: 435 RRK 437 >gi|323350973|ref|ZP_08086630.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis VMC66] gi|322122697|gb|EFX94406.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis VMC66] Length = 456 Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 42/157 (26%), Positives = 68/157 (43%), Gaps = 14/157 (8%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L++ YCG G A+ + ++I ++E A+ N N +++E Sbjct: 308 LIDAYCGVGTIGFAFAKRVKSLRGMDIIPEAIEDAKRNAKRMGFTNTLYETGTAEEIIPR 367 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCR 330 E YR + VDPPR+GLDD + + Y ++Y+SCN +L R Sbjct: 368 WYAE------------GYRANALIVDPPRTGLDDKLLETIVRYTPEKMVYVSCNVSTLAR 415 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRKPS 367 DL L + + + D FP+T E V L ++ S Sbjct: 416 DLVKLCQVYDVHYIQSVDMFPHTARTEAVVKLSKRDS 452 >gi|294787982|ref|ZP_06753226.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Simonsiella muelleri ATCC 29453] gi|294484275|gb|EFG31958.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Simonsiella muelleri ATCC 29453] Length = 435 Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 44/149 (29%), Positives = 73/149 (48%), Gaps = 15/149 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++L+CG GNF+L +AR VL VE A E A N N ++NV+ + + T+ Sbjct: 291 IVDLFCGLGNFTLPIARSGAMVLGVEGADFLTERAANNARENGLHNVQFRTANLFDVTEQ 350 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330 I+ Y F + +DPPR+G + + Y I+Y+SCNP + R Sbjct: 351 F-----------IESLGY-FDKMLLDPPRAGAYAVVQALQRPYLPKRIVYVSCNPATFAR 398 Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMEC 358 D ++L + + + + FP+T H+E Sbjct: 399 DAAVLVDKGYRFRAVGVMNLFPHTAHVEA 427 >gi|227112030|ref|ZP_03825686.1| 23S rRNA methyluridine methyltransferase [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 377 Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 45/156 (28%), Positives = 74/156 (47%), Gaps = 18/156 (11%) Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271 + +L+CG G F L A R+ +EI+ ++ AR + + V+ + S +F Sbjct: 236 SMWDLFCGVGGFGLHCASSEMRLTGIEISAEAIACARRSAEQLGLKQVEFQALDSTQFAT 295 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLC 329 A + D+ + V+PPR G+ + A +ILY SCN +S+ Sbjct: 296 AK------AEIPDL---------VLVNPPRRGIGSELCAYLSRMAPDYILYSSCNAESMA 340 Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 +D++ L T + R+ LFD FP+T H E LL R+ Sbjct: 341 KDMTEL-TNYRALRVQLFDMFPHTAHYEVLTLLKRE 375 >gi|294793541|ref|ZP_06758678.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Veillonella sp. 3_1_44] gi|294455111|gb|EFG23483.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Veillonella sp. 3_1_44] Length = 458 Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 86/386 (22%), Positives = 151/386 (39%), Gaps = 60/386 (15%) Query: 10 YEQQLAEKVDRLRQMM--LAFQVPNL---QIFRSEPIHYRMRAEFHIWHDGDDL---YHI 61 YE QL+ K +++ ++ + Q P L + +P YR + + + D+ ++ Sbjct: 92 YEGQLSLKTQKVKDVIERIGHQNPELVKPALGPKDPWAYRNKMQMPVGGTKGDILMGFYA 151 Query: 62 MFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTL 121 M + G+ +I ++ + +EP + + ++ Sbjct: 152 MGSHDIVQGTNCPIQDEGNNIIAQACYQIAKELDVEPY-----------DEHTGKGVLRH 200 Query: 122 IYHRLLDDAWRECAIRLRDAL-HARKYQIQLIGR------------ANKTKICLDRD--- 165 I R+ W + D L H K+ L R +T + L Sbjct: 201 IIGRIGQSGWMVILVTATDNLPHQEKWVKNLTERVPQVETIVHNVNGKRTNVILGPKNRI 260 Query: 166 -YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL--AATKGIQGDLLELYCGNGN 222 Y D +T + L + +SF Q N + + L A KG + +++ YCG G Sbjct: 261 LYGDGTITDHIKDLRFTLSPHSFFQVNPEQTTVLYDQALKYANLKG-EETVIDAYCGTGT 319 Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK-IVRMSSKEFTQAMRREREFNR 281 SL LA V+ +EI +P++ AR N N +N + IV ++ E + + Sbjct: 320 ISLFLAHKAKHVIGIEIVEPAIINARENARRNGYDNTEFIVADAAVEMPKLYKA------ 373 Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDD----ATVGMVQAYPHILYISCNPDSLCRDLSILS- 336 R I DP R+G + GM I+Y+SCNP ++ RD+ IL+ Sbjct: 374 -------GVRPDVIVFDPIRAGCKKEVLTSAAGMEPK--RIVYVSCNPATMARDIEILTH 424 Query: 337 TTHTIERLALFDQFPYTRHMECGVLL 362 + ++ + D FP T H+E LL Sbjct: 425 YGYELQEVQPVDMFPMTAHVEAVALL 450 >gi|23822135|sp|Q8PMU6|RUMA_XANAC RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase Length = 444 Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 57/192 (29%), Positives = 91/192 (47%), Gaps = 18/192 (9%) Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLA 236 L +R ++ F Q NA +N M+ +A + D +L+L+CG GNF+L LAR V+ Sbjct: 267 LAFRPLD--FIQVNASLNQKMIAHAVALLEAKPDDRVLDLFCGLGNFTLPLARVVREVVG 324 Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296 VE V A+ N N ++N + + + TQ R + F + Sbjct: 325 VEGDAGLVARAKENAQRNGLDNAQFY---AADLTQDQRSAPWMRQ---------GFDKLL 372 Query: 297 VDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDLSILSTTH--TIERLALFDQFPYT 353 +DPPRSG + + ++ + I+Y+SC+P SL RD L T+ D FP+T Sbjct: 373 LDPPRSGALEVLQQLPLKTFQRIVYVSCHPGSLARDAGYLVNEQGFTLVSAGAMDMFPHT 432 Query: 354 RHMECGVLLVRK 365 H+E + R+ Sbjct: 433 AHVESIAVFERR 444 >gi|294668410|ref|ZP_06733513.1| hypothetical protein NEIELOOT_00328 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291309728|gb|EFE50971.1| hypothetical protein NEIELOOT_00328 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 445 Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 50/181 (27%), Positives = 82/181 (45%), Gaps = 23/181 (12%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 FTQ NA +N M++ + + G+ + +L+CG GNF+L +AR +VL VE Sbjct: 273 GGFTQVNAKLNNLMVKRAMDLLQPSPGERIADLFCGLGNFTLPIARSGAQVLGVEGLPDL 332 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY----RFKTIFVDP 299 V A+ N ANH R++ L ++ ++ + +DP Sbjct: 333 VNRAKQNAVANHCQGYVDFRVAD---------------LFKVNPSAWDDWCNVDKVLLDP 377 Query: 300 PRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHM 356 PR+G + QA I+Y+SCNP + RD ++L + L + + F T H+ Sbjct: 378 PRTGAHAVIEMLTQARRLQRIVYVSCNPATFVRDAALLVGKGYRFRLLGVMNLFSQTAHI 437 Query: 357 E 357 E Sbjct: 438 E 438 >gi|82703334|ref|YP_412900.1| 23S rRNA 5-methyluridine methyltransferase [Nitrosospira multiformis ATCC 25196] gi|91207805|sp|Q2Y6W3|RUMA_NITMU RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|82411399|gb|ABB75508.1| 23S rRNA m(5)U-1939 methyltransferase [Nitrosospira multiformis ATCC 25196] Length = 439 Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 50/181 (27%), Positives = 88/181 (48%), Gaps = 21/181 (11%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 FTQ N +N ++ L +G+ + +L+CG GNF+L +AR +V+ E + Sbjct: 260 TEFTQVNPMVNRILVRRALNLLDPRRGERIADLFCGLGNFTLPVARRGAQVVGYEGSAAL 319 Query: 244 VEAARYNIAANHV-NNVKIVRMSSKEFTQA-MRREREFNRLKDIDIHSYRFKTIFVDPPR 301 V AR N N + + + + + E ++ MR + +F+++ +DPPR Sbjct: 320 VSRARQNSQRNGLAGSTRFMEANLFEIDESWMREQGDFDKM-------------LIDPPR 366 Query: 302 SGLDDATVGM--VQAYP-HILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTRHM 356 G + Q P I+Y+SCNP +L RD S+L + ++ + + FP+T H+ Sbjct: 367 EGAVAVVTALEEKQLKPWRIVYVSCNPATLARDASVLVHRNGYALKAAGVINMFPHTAHV 426 Query: 357 E 357 E Sbjct: 427 E 427 >gi|323127600|gb|ADX24897.1| tRNA (uracil-5-)-methyltransferase [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 543 Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 49/183 (26%), Positives = 83/183 (45%), Gaps = 16/183 (8%) Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 SF Q N + + + +A + + D+ ++ Y G G L A+ V VE+ + +V Sbjct: 280 SFYQVNTVMAEKLYQTAIAFSDLSEDDVVIDAYSGIGTIGLSFAKTVKAVYGVEVIEAAV 339 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 + A+ N A N + NV V +++ +E + I VDPPR GL Sbjct: 340 KDAQQNAARNGITNVHFVADTAENAMATWAKE------------GIKPSVILVDPPRKGL 387 Query: 305 DDATV-GMVQAYPH-ILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVL 361 ++ + V P I Y+SCNP ++ RD+ + + ++ D FP T H+E L Sbjct: 388 TESFIQASVAMGPQKITYVSCNPATMARDIKRYQDLGYKLTKVQPVDLFPQTHHVETVAL 447 Query: 362 LVR 364 L + Sbjct: 448 LSK 450 >gi|290473965|ref|YP_003466839.1| putative tRNA (uracil-5-)-methyltransferase with S-adenosyl-L-methionine-dependent methyltransferase domain [Xenorhabdus bovienii SS-2004] gi|289173272|emb|CBJ80047.1| putative tRNA (uracil-5-)-methyltransferase with S-adenosyl-L-methionine-dependent methyltransferase domain [Xenorhabdus bovienii SS-2004] Length = 377 Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 42/154 (27%), Positives = 72/154 (46%), Gaps = 18/154 (11%) Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271 + +L+CG G F L A R+ +EI+ ++ A+ + + + V+ + S F Sbjct: 236 SMWDLFCGAGGFGLHCADKETRLTGIEISAEAIACAKNSAKSLGLEQVEFQALDSTHFAL 295 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLC 329 + E + V+PPR G+ A + A ILY SCN +++ Sbjct: 296 DKAQLPEL---------------VLVNPPRRGIGKALCEYLSRMAPKFILYSSCNAETMA 340 Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363 +D++ L + IE++ LFD FP+T H E LL+ Sbjct: 341 KDIAALEQ-YRIEKVQLFDMFPHTEHYETLALLI 373 >gi|270308325|ref|YP_003330383.1| RNA methyltransferase, TrmA family [Dehalococcoides sp. VS] gi|270154217|gb|ACZ62055.1| RNA methyltransferase, TrmA family [Dehalococcoides sp. VS] Length = 400 Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 42/156 (26%), Positives = 84/156 (53%), Gaps = 20/156 (12%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L++ Y G G F+++L+ RV+A+E + +V+ A+ NI+ ++N+++++ +++ Sbjct: 261 LVDAYAGVGTFAVLLSPDCKRVIAIEESAAAVKDAKLNISG--IDNIELIQSKTEDV--- 315 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCR 330 NR ++ + + +DP RSG + + + P +++Y++C+P SL R Sbjct: 316 ------INRFEE------QMDALILDPSRSGAHPSVLATICQNPPRNLVYVACDPSSLAR 363 Query: 331 DLSI-LSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 DL I L+ + ++ D FP T H+E LL K Sbjct: 364 DLKILLAGPFELSQVIPVDMFPQTYHVETLALLKCK 399 >gi|119479021|ref|XP_001259539.1| tRNA(m5U54)methyltransferase [Neosartorya fischeri NRRL 181] gi|119407693|gb|EAW17642.1| tRNA(m5U54)methyltransferase [Neosartorya fischeri NRRL 181] Length = 531 Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 67/266 (25%), Positives = 113/266 (42%), Gaps = 44/266 (16%) Query: 132 RECAIRL-RDALHARKYQIQLIGRANKTK-----ICLDRD-YVDERLTVAGRTL------ 178 RE R+ +D+ A +Q G I ++RD Y++E+ V Sbjct: 275 RESTRRIPKDSAEAEAGAVQKEGENPPESESGDVIRIERDNYIEEKRCVTDNNATSVEYI 334 Query: 179 ---IYRQIENSFTQPNAGINVHMLEWVL--AATKGIQGD------LLELYCGNGNFSLVL 227 I+ +F Q N I E++ A KG + D LL+ Y G+G F++ L Sbjct: 335 DDYIFTNKAGAFFQNNNSILSGFTEYIRQHAFPKGNEQDPKPIKYLLDAYSGSGLFTITL 394 Query: 228 ARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDI 287 + F L V++A S+ +AR N AN++ N + + + E L Sbjct: 395 SPLFKSSLGVDVAADSIASARENARANNLPNTGFAAADAATLFKNVPYPPEQTLL----- 449 Query: 288 HSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSIL-----STTHT 340 +DPPR G D + + Y ++Y+SCN + RD++++ ++ + Sbjct: 450 --------VIDPPRKGCSDDFLRQLLTYGPRRVVYVSCNVHTQARDVAVMVQGDMNSRYE 501 Query: 341 IERLALFDQFPYTRHMECGVLLVRKP 366 IE + FD FP T H+E +L + P Sbjct: 502 IESIRGFDFFPQTGHVEGVAILNKVP 527 >gi|319941518|ref|ZP_08015845.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Sutterella wadsworthensis 3_1_45B] gi|319804992|gb|EFW01831.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Sutterella wadsworthensis 3_1_45B] Length = 491 Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 53/187 (28%), Positives = 84/187 (44%), Gaps = 15/187 (8%) Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 FTQ N +N M+ + G++ D + + +CG GNF+L LAR RV+ +E ++ V Sbjct: 279 FTQVNHALNETMVGRAVRLL-GLEPDHKVADFFCGLGNFTLPLARCSQRVIGIEGSEGLV 337 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG- 303 AR A N + R + E + + ID + +DPPR G Sbjct: 338 ARARQGAAENGLAEKTTFRARNLFTWSEQDWEELWQTMGGID-------RVLIDPPREGA 390 Query: 304 -LDDATVGMVQAYP-HILYISCNPDSLCRDLSILSTTHT--IERLALFDQFPYTRHMECG 359 + + P ++Y+SCNP +L RD +IL I + + FP+T H+E Sbjct: 391 LALARVLAATEKRPARVVYVSCNPATLARDCAILQHEGGWHIRAAGIMNMFPHTGHVESI 450 Query: 360 VLLVRKP 366 +L P Sbjct: 451 AVLEPGP 457 >gi|309805272|ref|ZP_07699324.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners LactinV 09V1-c] gi|308165506|gb|EFO67737.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners LactinV 09V1-c] Length = 361 Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 41/156 (26%), Positives = 74/156 (47%), Gaps = 15/156 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L++ Y G G ++ + +V+ +E ++ A++N N+V N + + S ++ Sbjct: 218 LVDAYAGVGTLGILASEKVKQVIGIESIPEAIADAQFNCRLNNVKNAEYINGSVEKILPQ 277 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330 M+++ + VDPPR+GL+ V ++ P +YISCNP +L R Sbjct: 278 MQKD------------GIAIDALIVDPPRTGLNKQLVKTLLTCKPKDFVYISCNPSTLAR 325 Query: 331 DLSILSTTHTIERLALFDQFPYTRHME-CGVLLVRK 365 DL +LS + + + D P T E L++RK Sbjct: 326 DLVLLSQAYDVRLIQPVDMMPQTPRWEGIAKLVLRK 361 >gi|242208408|ref|XP_002470055.1| predicted protein [Postia placenta Mad-698-R] gi|220730955|gb|EED84805.1| predicted protein [Postia placenta Mad-698-R] Length = 445 Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 57/230 (24%), Positives = 98/230 (42%), Gaps = 32/230 (13%) Query: 153 GRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAAT-----K 207 G A + +C+ R V T Y I SF Q N + + + +V A Sbjct: 228 GHAVEKHVCITDHKATVRERVGDNTFEY--IAGSFFQNNNSVLLPLTSYVRDAIFAHHQS 285 Query: 208 GIQGD-----LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262 G L++ YCG+G F++ LAR F +V +E+++ S+ A N N + + Sbjct: 286 GPTAPPRPTHLVDAYCGSGLFAITLARSFQKVAGIELSEDSIRCATRNAQLNDIPPDQCS 345 Query: 263 RMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH--ILY 320 MS + ++F R + + + +DPPR G D+ + + + ++Y Sbjct: 346 FMSG-DAANIFATVQDFPRDQTV---------LIIDPPRKGTDEKFIDQLLEFQGALVVY 395 Query: 321 ISCNPDSLCRDLSIL--------STTHTIERLALFDQFPYTRHMECGVLL 362 +SCN + RD+ + + +E L FD FP T H+E +L Sbjct: 396 VSCNVHTQARDVGTILRKSEASGGRRYVMESLVGFDLFPQTAHVESVAVL 445 >gi|309803238|ref|ZP_07697335.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners LactinV 11V1-d] gi|308164746|gb|EFO66996.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners LactinV 11V1-d] Length = 361 Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 41/156 (26%), Positives = 74/156 (47%), Gaps = 15/156 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L++ Y G G ++ + +V+ +E ++ A++N N+V N + + S ++ Sbjct: 218 LVDAYAGVGTLGILASEKVKQVIGIESIPEAIADAQFNCRLNNVKNAEYINGSVEKILPQ 277 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330 M+++ + VDPPR+GL+ V ++ P +YISCNP +L R Sbjct: 278 MQKD------------GIAIDALIVDPPRTGLNKQLVKTLLTCKPKDFVYISCNPSTLAR 325 Query: 331 DLSILSTTHTIERLALFDQFPYTRHME-CGVLLVRK 365 DL +LS + + + D P T E L++RK Sbjct: 326 DLVLLSQAYDVRLIQPVDMMPQTPRWEGIAKLVLRK 361 >gi|194397238|ref|YP_002037663.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae G54] gi|194356905|gb|ACF55353.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae G54] Length = 543 Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 45/155 (29%), Positives = 76/155 (49%), Gaps = 15/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ Y G G L +A+H V VE+ +VE ++ N N+++N V +++ A Sbjct: 308 IIDAYSGIGTIGLSVAKHVKEVYGVELIPEAVENSKKNAQLNNISNAHYVCDTAE---NA 364 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV--GMVQAYPHILYISCNPDSLCR 330 M+ N LKD + I VDPPR GL ++ + I YISCN ++ R Sbjct: 365 MK-----NWLKD----GIQPTVILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMAR 415 Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364 D+ + + ++++ D FP T H+E LL + Sbjct: 416 DIKLYQELGYELKKVQPVDLFPQTHHVETVALLSK 450 >gi|149006286|ref|ZP_01829998.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae SP18-BS74] gi|307127423|ref|YP_003879454.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae 670-6B] gi|147762063|gb|EDK69025.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae SP18-BS74] gi|306484485|gb|ADM91354.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae 670-6B] Length = 543 Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 45/155 (29%), Positives = 76/155 (49%), Gaps = 15/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ Y G G L +A+H V VE+ +VE ++ N N+++N V +++ A Sbjct: 308 IIDAYSGIGTIGLSVAKHVKEVYGVELIPEAVENSKKNAQLNNISNAHYVCDTAE---NA 364 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV--GMVQAYPHILYISCNPDSLCR 330 M+ N LKD + I VDPPR GL ++ + I YISCN ++ R Sbjct: 365 MK-----NWLKD----GIQPTVILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMAR 415 Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364 D+ + + ++++ D FP T H+E LL + Sbjct: 416 DIKLYQELGYELKKVQPVDLFPQTHHVETVALLSK 450 >gi|21242082|ref|NP_641664.1| 23S rRNA 5-methyluridine methyltransferase [Xanthomonas axonopodis pv. citri str. 306] gi|21107489|gb|AAM36200.1| RNA methyltransferase [Xanthomonas axonopodis pv. citri str. 306] Length = 451 Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 57/192 (29%), Positives = 91/192 (47%), Gaps = 18/192 (9%) Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLA 236 L +R ++ F Q NA +N M+ +A + D +L+L+CG GNF+L LAR V+ Sbjct: 274 LAFRPLD--FIQVNASLNQKMIAHAVALLEAKPDDRVLDLFCGLGNFTLPLARVVREVVG 331 Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296 VE V A+ N N ++N + + + TQ R + F + Sbjct: 332 VEGDAGLVARAKENAQRNGLDNAQFY---AADLTQDQRSAPWMRQ---------GFDKLL 379 Query: 297 VDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDLSILSTTH--TIERLALFDQFPYT 353 +DPPRSG + + ++ + I+Y+SC+P SL RD L T+ D FP+T Sbjct: 380 LDPPRSGALEVLQQLPLKTFQRIVYVSCHPGSLARDAGYLVNEQGFTLVSAGAMDMFPHT 439 Query: 354 RHMECGVLLVRK 365 H+E + R+ Sbjct: 440 AHVESIAVFERR 451 >gi|301154691|emb|CBW14154.1| 23S rRNA m(5)U747 methyltransferase [Haemophilus parainfluenzae T3T1] Length = 391 Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 52/182 (28%), Positives = 82/182 (45%), Gaps = 31/182 (17%) Query: 193 GINVHMLEWV--LAATKGIQGDLLELYCGNGNFSLVLARHFD-------RVLAVEIAKPS 243 G+ +WV L TK L +L+CG G F L A+ ++ +EI+ + Sbjct: 226 GLYATAQDWVQDLPITK-----LWDLFCGVGGFGLHCAKALQDKHQQEVELIGIEISPSA 280 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 ++AA + +NNVK + + F A + + V+PPR G Sbjct: 281 IQAATQSAQVLGLNNVKFQSLDAANFALAQDENKP--------------DLVIVNPPRRG 326 Query: 304 LDDATVGMV-QAYPH-ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVL 361 + + + PH ILY SCN S+ +DL L T + + ++ LFD FP+T H E +L Sbjct: 327 IGKELAEFLNEMQPHFILYSSCNAVSMGKDLQHL-TNYKLTQIQLFDMFPHTAHYEVLLL 385 Query: 362 LV 363 L Sbjct: 386 LT 387 >gi|229552631|ref|ZP_04441356.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus rhamnosus LMS2-1] gi|258540007|ref|YP_003174506.1| RNA methyltransferase [Lactobacillus rhamnosus Lc 705] gi|229314002|gb|EEN79975.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus rhamnosus LMS2-1] gi|257151683|emb|CAR90655.1| RNA methyltransferase [Lactobacillus rhamnosus Lc 705] Length = 455 Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 56/218 (25%), Positives = 92/218 (42%), Gaps = 27/218 (12%) Query: 155 ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATK-----GI 209 ++++ + Y+ E T++GRT ++ +F Q +N E + A K Sbjct: 258 GKESRLLAGQPYIQE--TLSGRT--FQLSPQAFLQ----LNPKQTEQLYAIAKDALQLAP 309 Query: 210 QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269 L++ YCG G + LA + ++ ++ A+ N N NN Sbjct: 310 DDTLIDAYCGIGTVGMSLANRHQSIYGMDTIPEAIADAKDNAKNNGFNNTHYF------- 362 Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDS 327 + E F + IH + VDPPRSGL+ + ++Q P YISCNP + Sbjct: 363 --VGKAETLFPKWLKEGIHP---NAVIVDPPRSGLERPFIDALLQLNPQKFAYISCNPST 417 Query: 328 LCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 L RDL L+ + ++ + D FP T E V R+ Sbjct: 418 LARDLVPLAKHYQVDWIQSIDMFPQTARCEAVVKFTRR 455 >gi|324112659|gb|EGC06635.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia fergusonii B253] Length = 375 Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 44/155 (28%), Positives = 73/155 (47%), Gaps = 18/155 (11%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + +L+CG G F L A ++ +EIA ++ A+ + A + ++ + S +F A Sbjct: 237 MWDLFCGVGGFGLHCATPDMQLTGIEIAPEAIACAKQSAAELGLTRLQFQALDSTQFATA 296 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCR 330 E + V+PPR G+ + A I+Y SCN ++ + Sbjct: 297 QGEVPEL---------------VLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAK 341 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 D+ LS + IER+ LFD FP+T H E LLV++ Sbjct: 342 DIRELSG-YRIERVQLFDMFPHTAHYEVLTLLVKQ 375 >gi|188577277|ref|YP_001914206.1| 23S rRNA 5-methyluridine methyltransferase [Xanthomonas oryzae pv. oryzae PXO99A] gi|188521729|gb|ACD59674.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Xanthomonas oryzae pv. oryzae PXO99A] Length = 418 Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 58/192 (30%), Positives = 90/192 (46%), Gaps = 18/192 (9%) Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLA 236 L +R ++ F Q NA +N M+ LA D +L+L+CG GNF+L LAR V+ Sbjct: 241 LAFRPLD--FIQVNASLNQKMIVHALALLDAKPDDRVLDLFCGLGNFTLPLARVVREVVG 298 Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296 VE V A+ N N ++N + + + TQ R + F + Sbjct: 299 VEGDAGLVARAKDNAQRNGLDNAQFY---AADLTQDQRNAAWMRQ---------GFDKLL 346 Query: 297 VDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDLSILSTTH--TIERLALFDQFPYT 353 +DPPRSG + + ++ + I+Y+SC+P SL RD L T+ D FP+T Sbjct: 347 LDPPRSGALEVLQQLPLKTFERIVYVSCHPGSLARDAGYLVNEQGFTLVSAGAMDMFPHT 406 Query: 354 RHMECGVLLVRK 365 H+E + R+ Sbjct: 407 AHVESIAVFERR 418 >gi|303270015|ref|ZP_07355742.1| RNA methyltransferase, TrmA family protein [Streptococcus pneumoniae BS458] gi|302640448|gb|EFL70868.1| RNA methyltransferase, TrmA family protein [Streptococcus pneumoniae BS458] Length = 446 Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 41/150 (27%), Positives = 66/150 (44%), Gaps = 14/150 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L++ YCG G A+ + ++I ++E A+ N +N +++E Sbjct: 308 LIDAYCGVGTIGFAFAKKVKTLRGMDIIPEAIEDAKRNAKRMGFDNTHYEAGTAEEIIPR 367 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330 +E YR + VDPPR+GLDD + + Y ++YISCN +L R Sbjct: 368 WYKE------------GYRADALIVDPPRTGLDDKLLDTILTYVPEKMVYISCNVSTLAR 415 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGV 360 DL L + + + D FP+T E V Sbjct: 416 DLVRLVEVYDLHYIQSVDMFPHTARTEAVV 445 >gi|295670283|ref|XP_002795689.1| tRNA (uracil-5-)-methyltransferase [Paracoccidioides brasiliensis Pb01] gi|226284774|gb|EEH40340.1| tRNA (uracil-5-)-methyltransferase [Paracoccidioides brasiliensis Pb01] Length = 549 Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 49/164 (29%), Positives = 77/164 (46%), Gaps = 25/164 (15%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 LL+ Y G+G F++ L+ F L V+IA S+EAAR N AN++ N + Sbjct: 365 LLDAYSGSGLFTVTLSPLFLSSLGVDIAPQSIEAARKNARANNLPNTGFAAADAAAI--- 421 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330 KD+ + + +DPPR G D+ + + Y ++Y+SCN + R Sbjct: 422 ---------FKDVPYPPEK-TLLVIDPPRKGCDNNFLQQLLWYGPARVVYVSCNVHTQAR 471 Query: 331 DLSIL---------STTHTIERLALFDQFPYTRHMECGVLLVRK 365 D+ +L + IE + FD FP T H+E GV ++ K Sbjct: 472 DVGVLVQGANVKGEEVRYKIESIKGFDFFPQTGHVE-GVAILNK 514 >gi|282898476|ref|ZP_06306466.1| 23S rRNA methyltransferase/RumA [Raphidiopsis brookii D9] gi|281196642|gb|EFA71548.1| 23S rRNA methyltransferase/RumA [Raphidiopsis brookii D9] Length = 453 Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 52/170 (30%), Positives = 84/170 (49%), Gaps = 23/170 (13%) Query: 202 VLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259 V+ + +QGD L++ YCG G +L LA+ + + +EI +VE A N N + N Sbjct: 300 VIQSQLNLQGDEILVDAYCGIGTLTLPLAKQARQTIGLEIQPAAVEQAICNAQHNGIINA 359 Query: 260 KIVRMSSKEFTQAMRREREFNRLKDI-DIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH 317 K Q E +L+ + DI + +DPPR G + + +++ P Sbjct: 360 KF---------QIGAVEDILPKLETVPDI-------VLLDPPRKGCESIVLESLLKLKPK 403 Query: 318 -ILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTRHMECGVLLVR 364 I YISC +L RDLS+L S+ + ++++ D FP+T H+E L R Sbjct: 404 KIAYISCKASTLARDLSLLCASSEYKLKKVQPADFFPHTPHVETVAFLER 453 >gi|226294037|gb|EEH49457.1| tRNA (uracil-5-)-methyltransferase [Paracoccidioides brasiliensis Pb18] Length = 550 Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 48/164 (29%), Positives = 77/164 (46%), Gaps = 25/164 (15%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 LL+ Y G+G F++ L+ F L ++IA S+EAAR N AN++ N + Sbjct: 365 LLDAYSGSGLFTVTLSPLFLSSLGIDIAPQSIEAARKNARANNLPNTGFAAADAATI--- 421 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330 KD+ + + +DPPR G D+ + + Y ++Y+SCN + R Sbjct: 422 ---------FKDVPYPPEK-TLLVIDPPRKGCDNNFLQQLLWYGPARVVYVSCNVHTQAR 471 Query: 331 DLSIL---------STTHTIERLALFDQFPYTRHMECGVLLVRK 365 D+ +L + IE + FD FP T H+E GV ++ K Sbjct: 472 DVGVLVQGANVKGEEVRYEIESIKGFDFFPQTGHVE-GVAILNK 514 >gi|70997497|ref|XP_753495.1| tRNA(m5U54)methyltransferase [Aspergillus fumigatus Af293] gi|66851131|gb|EAL91457.1| tRNA(m5U54)methyltransferase [Aspergillus fumigatus Af293] gi|159126776|gb|EDP51892.1| tRNA(m5U54)methyltransferase [Aspergillus fumigatus A1163] Length = 578 Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 54/203 (26%), Positives = 91/203 (44%), Gaps = 28/203 (13%) Query: 179 IYRQIENSFTQPNAGINVHMLEWVL--AATKGIQGD------LLELYCGNGNFSLVLARH 230 I+ +F Q N I E++ A KG + D LL+ Y G+G F++ L+ Sbjct: 385 IFTNKAGAFFQNNNSILSGFTEYIRQHAFPKGNEQDPKPIKYLLDAYSGSGLFTITLSPL 444 Query: 231 FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY 290 F L V++A S+ +AR N AN++ N + + + E L Sbjct: 445 FKSSLGVDVAADSIASARENARANNLPNTGFAAADAATLFKNVPYPPEQTLL-------- 496 Query: 291 RFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSIL-----STTHTIER 343 +DPPR G D + + Y ++Y+SCN + RD++++ ++ + IE Sbjct: 497 -----VIDPPRKGCSDDFLRQLLTYGPRRVVYVSCNVHTQARDVAVMVQGDMNSRYEIES 551 Query: 344 LALFDQFPYTRHMECGVLLVRKP 366 + FD FP T H+E +L + P Sbjct: 552 IRGFDFFPQTGHVEGVAILNKVP 574 >gi|167562543|ref|ZP_02355459.1| 23S rRNA 5-methyluridine methyltransferase [Burkholderia oklahomensis EO147] gi|167569726|ref|ZP_02362600.1| 23S rRNA 5-methyluridine methyltransferase [Burkholderia oklahomensis C6786] Length = 465 Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 55/191 (28%), Positives = 86/191 (45%), Gaps = 26/191 (13%) Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 FTQ N IN ++ L +GD +L+L+CG GNF+L LAR V+ +E ++ Sbjct: 287 FTQVNHQINRVLVGRALRLLAPSRGDRVLDLFCGIGNFTLPLARLAREVVGIEGSETLTS 346 Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG-- 303 A N N V+ F E + L+ + F + +DPPR G Sbjct: 347 RALENAKENGVDG-------HTSFACRNLFEVTADDLRALGA----FDKVLIDPPREGAL 395 Query: 304 --------LDDATVGMVQAYPHILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYT 353 + + VG + A I+Y+SCNP +L RD +L + ++ + + FP+T Sbjct: 396 AVSKALAEIAQSGVGPLPA--RIVYVSCNPSTLARDAGLLVHEAGYRLKGAGVVNMFPHT 453 Query: 354 RHMECGVLLVR 364 H+E L R Sbjct: 454 SHVESIALFER 464 >gi|84367352|dbj|BAE68510.1| RNA methyltransferase [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 418 Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 58/192 (30%), Positives = 90/192 (46%), Gaps = 18/192 (9%) Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLA 236 L +R ++ F Q NA +N M+ LA D +L+L+CG GNF+L LAR V+ Sbjct: 241 LAFRPLD--FIQVNASLNQKMIVHALALLDAKPDDRVLDLFCGLGNFTLPLARVVREVVG 298 Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296 VE V A+ N N ++N + + + TQ R + F + Sbjct: 299 VEGDAGLVARAKDNAQRNGLDNAQFY---AADLTQDQRNAAWMRQ---------GFDKLL 346 Query: 297 VDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDLSILSTTH--TIERLALFDQFPYT 353 +DPPRSG + + ++ + I+Y+SC+P SL RD L T+ D FP+T Sbjct: 347 LDPPRSGALEVLQQLPLKTFERIVYVSCHPGSLARDAGYLVNEQGFTLVSAGAMDMFPHT 406 Query: 354 RHMECGVLLVRK 365 H+E + R+ Sbjct: 407 AHVESIAVFERR 418 >gi|309806433|ref|ZP_07700441.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners LactinV 03V1-b] gi|308167186|gb|EFO69357.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners LactinV 03V1-b] Length = 306 Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 41/156 (26%), Positives = 74/156 (47%), Gaps = 15/156 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L++ Y G G ++ + +V+ +E ++ A++N N+V N + + S ++ Sbjct: 163 LVDAYAGVGTLGILASEKVKQVIGIESIPEAIADAQFNCRLNNVKNAEYINGSVEKILPQ 222 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330 M+++ + VDPPR+GL+ V ++ P +YISCNP +L R Sbjct: 223 MQKD------------GIAIDALIVDPPRTGLNKQLVKTLLTCKPKDFVYISCNPSTLAR 270 Query: 331 DLSILSTTHTIERLALFDQFPYTRHME-CGVLLVRK 365 DL +LS + + + D P T E L++RK Sbjct: 271 DLVLLSQAYDVRLIQPVDMMPQTPRWEGIAKLVLRK 306 >gi|303265405|ref|ZP_07351310.1| RNA methyltransferase, TrmA family protein [Streptococcus pneumoniae BS397] gi|302645057|gb|EFL75299.1| RNA methyltransferase, TrmA family protein [Streptococcus pneumoniae BS397] Length = 431 Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 41/150 (27%), Positives = 66/150 (44%), Gaps = 14/150 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L++ YCG G A+ + ++I ++E A+ N +N +++E Sbjct: 293 LIDAYCGVGTIGFAFAKKVKTLRGMDIIPEAIEDAKRNAKRMGFDNTHYEAGTAEEIIPR 352 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330 +E YR + VDPPR+GLDD + + Y ++YISCN +L R Sbjct: 353 WYKE------------GYRADALIVDPPRTGLDDKLLDTILTYVPEKMVYISCNVSTLAR 400 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGV 360 DL L + + + D FP+T E V Sbjct: 401 DLVRLVEVYDLHYIQSVDMFPHTARTEAVV 430 >gi|209525609|ref|ZP_03274147.1| RNA methyltransferase, TrmA family [Arthrospira maxima CS-328] gi|209493942|gb|EDZ94259.1| RNA methyltransferase, TrmA family [Arthrospira maxima CS-328] Length = 509 Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 55/187 (29%), Positives = 85/187 (45%), Gaps = 32/187 (17%) Query: 194 INVHMLEWVLAATKG---IQGD--LLELYCGNGNFSLVLARHFD--------RVLAVEIA 240 +N E +L+A +QG L++ YCG G F+L LA+ R + +E Sbjct: 335 VNTEAAESLLSAISSELNLQGHEILVDAYCGIGTFTLPLAKQLGQNFPPGEIRAIGLESQ 394 Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300 +VE A N N +N+V EF R N K + ++ + +DPP Sbjct: 395 AGAVEQAISNADLNDINHV--------EF-------RVGNVQKLLPEIPFQPDIVVLDPP 439 Query: 301 RSGLDDATV-GMVQAYPH-ILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTRHM 356 R G D + ++ P I+YISC P +L RDL +L + + + ++ D FP T H+ Sbjct: 440 RQGCDRTVIQTLLNLQPQRIVYISCRPVTLARDLQLLCENGIYQLTKVQPADFFPQTSHV 499 Query: 357 ECGVLLV 363 EC L Sbjct: 500 ECAAFLT 506 >gi|332638388|ref|ZP_08417251.1| RNA methyltransferase [Weissella cibaria KACC 11862] Length = 496 Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 53/211 (25%), Positives = 91/211 (43%), Gaps = 19/211 (9%) Query: 158 TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLEL 216 TK+ +Y+ E T+ G+T ++ +F Q N + ++A Q D L++ Sbjct: 300 TKLLWGSEYITE--TINGKT--FKLSPRAFLQLNPRQTQRLYNEAISALDLTQADKLIDA 355 Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276 Y G G + LA H V ++ +++ A N N V N ++++ E Sbjct: 356 YSGVGTIGITLADHAGEVRGMDTVPEAIDDANENALDNGVKNAAYYTGAAEDLIPRWANE 415 Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDA-TVGMVQAYP-HILYISCNPDSLCRDLSI 334 + + VDPPR+GLD+ + ++ P +Y+SCN +L RDL Sbjct: 416 ------------GWVADALVVDPPRTGLDEELRLTILDTQPDKFVYVSCNASTLARDLVD 463 Query: 335 LSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 L+ + +E + D FP T E V +K Sbjct: 464 LTRVYNVEYIQSIDMFPQTARWEGIVKFTKK 494 >gi|323976756|gb|EGB71844.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli TW10509] Length = 375 Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 44/155 (28%), Positives = 73/155 (47%), Gaps = 18/155 (11%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + +L+CG G F L A ++ +EIA ++ A+ + A + ++ + S +F A Sbjct: 237 MWDLFCGVGGFGLHCATPDMQLTGIEIAPEAIACAKQSAAELGLTRLQFQALDSTQFATA 296 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCR 330 E + V+PPR G+ + A I+Y SCN ++ + Sbjct: 297 QGEVPEL---------------VLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAK 341 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 D+ LS + IER+ LFD FP+T H E LLV++ Sbjct: 342 DIRELSG-YRIERVQLFDMFPHTAHYEVLTLLVKQ 375 >gi|16125575|ref|NP_420139.1| RNA methyltransferase [Caulobacter crescentus CB15] gi|221234324|ref|YP_002516760.1| tRNA (uracil-5-)-methyltransferase [Caulobacter crescentus NA1000] gi|50401664|sp|Q9A8M7|Y1326_CAUCR RecName: Full=Uncharacterized RNA methyltransferase CC_1326 gi|13422671|gb|AAK23307.1| RNA methyltransferase, TrmA family [Caulobacter crescentus CB15] gi|220963496|gb|ACL94852.1| tRNA (uracil-5-)-methyltransferase [Caulobacter crescentus NA1000] Length = 415 Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 51/203 (25%), Positives = 91/203 (44%), Gaps = 29/203 (14%) Query: 170 RLTVAGRTL-------------IYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLEL 216 R+T+AG T+ + SF Q M+E +A +G + +L Sbjct: 220 RVTLAGETIYGARQPLVKLGQAVVALPPGSFLQAVPAAEKAMVELAVAEAQGAS-RVADL 278 Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276 YCG G F+ LA +V A E++ P++ A + I +K + +++ +RR Sbjct: 279 YCGVGTFTFPLA-EVAQVYAAEMSAPAITALKAAI--GGAPGLKPITAEARDL---VRRP 332 Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA-YPHILYISCNPDSLCRDLSIL 335 L D+ + +DPPR+G + TV + ++ +L +SCNP + +D +L Sbjct: 333 VLSTELAKTDV-------VVIDPPRAGAAEQTVEIAKSKVAKVLGVSCNPQTFAKDARVL 385 Query: 336 -STTHTIERLALFDQFPYTRHME 357 + R+ DQF ++ H+E Sbjct: 386 VDAGFKLVRVTPVDQFVWSPHIE 408 >gi|241895890|ref|ZP_04783186.1| 23S rRNA (uracil-5-)-methyltransferase [Weissella paramesenteroides ATCC 33313] gi|241870933|gb|EER74684.1| 23S rRNA (uracil-5-)-methyltransferase [Weissella paramesenteroides ATCC 33313] Length = 458 Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 57/192 (29%), Positives = 88/192 (45%), Gaps = 27/192 (14%) Query: 185 NSFTQPNAGINVHMLE--WVLAATKG---IQGDLLELYCGNGNFSLVLARHFDRVLAVEI 239 NSF Q +N E + LAA K +++ Y G G L +A +VL VE+ Sbjct: 284 NSFYQ----VNPQTTEVLYALAARKAELKPTDTVIDAYSGIGTIGLTVASQVKQVLGVEV 339 Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299 + +V A+ N+ N V N + + + +R + +H+ IFVDP Sbjct: 340 IERAVIDAQKNVMNNQVKNATFITADAPA---------QMHRWQQEGLHA---NVIFVDP 387 Query: 300 PRSGLDDATVGMV-QAYP-HILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTRH 355 PR GL + + V + P +Y+SCNP ++ RD L H + DQFP T H Sbjct: 388 PRRGLTNELLDAVTEMRPDRFVYVSCNPATMARDAKYLIEQGFHIKGDVQPLDQFPQTAH 447 Query: 356 MECGVLLVRKPS 367 +E V+ V +P+ Sbjct: 448 VE--VVTVFEPN 457 >gi|94992657|ref|YP_600756.1| 23S rRNA m(5)U 1939 methyltransferase [Streptococcus pyogenes MGAS2096] gi|94546165|gb|ABF36212.1| 23S rRNA m(5)U 1939 methyltransferase [Streptococcus pyogenes MGAS2096] Length = 464 Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 50/186 (26%), Positives = 85/186 (45%), Gaps = 16/186 (8%) Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 SF Q N + + + +A + + D+ ++ Y G G L A+ V VE+ + +V Sbjct: 291 SFYQVNTIMAEKLYQTAIAFSDLSKDDIVIDAYSGIGTIGLSFAKTVKAVYGVEVIEAAV 350 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 A+ N A N + N V +++ ++ + I VDPPR GL Sbjct: 351 RDAQQNAALNGITNAYFVADTAEHAMATWAKD------------GIKPSVILVDPPRKGL 398 Query: 305 DDATV-GMVQAYPH-ILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVL 361 ++ + V P I+YISCNP ++ RD+ + + ++ D FP T H+E VL Sbjct: 399 TESFIQASVAMGPQKIIYISCNPATMARDIKRYQELGYKLTKVQPVDLFPQTHHVETIVL 458 Query: 362 LVRKPS 367 + +K S Sbjct: 459 IQKKNS 464 >gi|309810186|ref|ZP_07704031.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners SPIN 2503V10-D] gi|315653660|ref|ZP_07906580.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus iners ATCC 55195] gi|308169458|gb|EFO71506.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners SPIN 2503V10-D] gi|315489022|gb|EFU78664.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus iners ATCC 55195] Length = 355 Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 41/156 (26%), Positives = 74/156 (47%), Gaps = 15/156 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L++ Y G G ++ + +V+ +E ++ A++N N+V N + + S ++ Sbjct: 212 LVDAYAGVGTLGILASEKVKQVIGIESIPEAIADAQFNCRLNNVKNAEYINGSVEKILPQ 271 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330 M+++ + VDPPR+GL+ V ++ P +YISCNP +L R Sbjct: 272 MQKD------------GIAIDALIVDPPRTGLNKQLVKTLLTCKPKDFVYISCNPSTLAR 319 Query: 331 DLSILSTTHTIERLALFDQFPYTRHME-CGVLLVRK 365 DL +LS + + + D P T E L++RK Sbjct: 320 DLVLLSQAYDVRLIQPVDMMPQTPRWEGIAKLVLRK 355 >gi|225854529|ref|YP_002736041.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae JJA] gi|225722765|gb|ACO18618.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae JJA] Length = 543 Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 45/155 (29%), Positives = 76/155 (49%), Gaps = 15/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ Y G G L +A+H V VE+ +VE ++ N N+++N V +++ A Sbjct: 308 VIDAYSGIGTIGLSVAKHVKEVYGVELIPEAVENSKKNAQLNNISNAHYVCDTAE---NA 364 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV--GMVQAYPHILYISCNPDSLCR 330 M+ N LKD + I VDPPR GL ++ + I YISCN ++ R Sbjct: 365 MK-----NWLKD----GIQPTVILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMAR 415 Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364 D+ + + ++++ D FP T H+E LL + Sbjct: 416 DIKLYQELGYELKKVQPVDLFPQTHHVETVALLSK 450 >gi|324991264|gb|EGC23197.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis SK353] Length = 456 Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 42/157 (26%), Positives = 69/157 (43%), Gaps = 14/157 (8%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L++ YCG G A+ + ++I ++E A+ N +N +++E Sbjct: 308 LIDAYCGVGTIGFAFAKKVKSLRGMDIIPEAIEDAKRNAKRMGFDNTLYEAGTAEEIIPR 367 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCR 330 E YR + VDPPR+GLD+ + + Y ++Y+SCN +L R Sbjct: 368 WYAE------------GYRADALIVDPPRTGLDNKLLETIVRYAPEKMVYVSCNVSTLAR 415 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRKPS 367 DL L + + + D FP+T E V L +K S Sbjct: 416 DLVKLCQVYDVHYIQSVDMFPHTARTEAVVKLSKKDS 452 >gi|300722504|ref|YP_003711794.1| putative tRNA (uracil-5-)-methyltransferase [Xenorhabdus nematophila ATCC 19061] gi|297629011|emb|CBJ89596.1| putative tRNA (uracil-5-)-methyltransferase with S-adenosyl-L-methionine-dependent methyltransferase domain [Xenorhabdus nematophila ATCC 19061] Length = 375 Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 39/155 (25%), Positives = 74/155 (47%), Gaps = 18/155 (11%) Query: 211 GDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270 + +L+CG G F L A ++ +EI+ +++ A+ + + + +V+ + S F Sbjct: 235 SSMWDLFCGAGGFGLHCADKETKLTGIEISAEAIDCAKSSAKSLGLKSVEFQALDSTHFA 294 Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSL 328 + E + V+PPR G+ + A +LY SCN +++ Sbjct: 295 LEKAKIPEL---------------VLVNPPRRGIGKELCEYLSRMAPKFVLYSSCNAETM 339 Query: 329 CRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363 +D+++L + IE++ LFD FP+T H E LL+ Sbjct: 340 AKDIAMLKQ-YRIEKVQLFDMFPHTEHYETLALLI 373 >gi|225684394|gb|EEH22678.1| tRNA(m5U54)methyltransferase [Paracoccidioides brasiliensis Pb03] Length = 573 Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 48/164 (29%), Positives = 77/164 (46%), Gaps = 25/164 (15%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 LL+ Y G+G F++ L+ F L ++IA S+EAAR N AN++ N + Sbjct: 388 LLDAYSGSGLFTVTLSPLFLSSLGIDIAPQSIEAARKNARANNLPNTGFAAADAATI--- 444 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330 KD+ + + +DPPR G D+ + + Y ++Y+SCN + R Sbjct: 445 ---------FKDVPYPPEK-TLLVIDPPRKGCDNNFLQQLLWYGPARVVYVSCNVHTQAR 494 Query: 331 DLSIL---------STTHTIERLALFDQFPYTRHMECGVLLVRK 365 D+ +L + IE + FD FP T H+E GV ++ K Sbjct: 495 DVGVLVQGANVKGEEVRYEIESIKGFDFFPQTGHVE-GVAILNK 537 >gi|323967294|gb|EGB62717.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli M863] gi|327253646|gb|EGE65275.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli STEC_7v] Length = 375 Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 44/155 (28%), Positives = 73/155 (47%), Gaps = 18/155 (11%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + +L+CG G F L A ++ +EIA ++ A+ + A + ++ + S +F A Sbjct: 237 MWDLFCGVGGFGLHCATPDMQLTGIEIAPEAIACAKQSAAELGLTRLQFQALDSTQFATA 296 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCR 330 E + V+PPR G+ + A I+Y SCN ++ + Sbjct: 297 QGEVPEL---------------VLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAK 341 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 D+ LS + IER+ LFD FP+T H E LLV++ Sbjct: 342 DIRELSG-YRIERVQLFDMFPHTAHYEVLTLLVKQ 375 >gi|225856683|ref|YP_002738194.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae P1031] gi|225725093|gb|ACO20945.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae P1031] Length = 543 Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 45/155 (29%), Positives = 76/155 (49%), Gaps = 15/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ Y G G L +A+H V VE+ +VE ++ N N+++N V +++ A Sbjct: 308 VIDAYSGIGTIGLSVAKHVKEVYGVELIPEAVENSKKNAQLNNISNAHYVCDTAE---NA 364 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV--GMVQAYPHILYISCNPDSLCR 330 M+ N LKD + I VDPPR GL ++ + I YISCN ++ R Sbjct: 365 MK-----NWLKD----GIQPTVILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMAR 415 Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364 D+ + + ++++ D FP T H+E LL + Sbjct: 416 DIKLYQELGYELKKVQPVDLFPQTHHVETVALLSK 450 >gi|15902976|ref|NP_358526.1| hypothetical protein spr0932 [Streptococcus pneumoniae R6] gi|116515807|ref|YP_816392.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae D39] gi|149019625|ref|ZP_01834944.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae SP23-BS72] gi|168483100|ref|ZP_02708052.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae CDC1873-00] gi|50401573|sp|Q8DPY7|Y932_STRR6 RecName: Full=Uncharacterized RNA methyltransferase spr0932 gi|15458541|gb|AAK99736.1| Conserved hypothetical protein [Streptococcus pneumoniae R6] gi|116076383|gb|ABJ54103.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae D39] gi|147931000|gb|EDK81980.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae SP23-BS72] gi|172043444|gb|EDT51490.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae CDC1873-00] Length = 543 Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 45/155 (29%), Positives = 76/155 (49%), Gaps = 15/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ Y G G L +A+H V VE+ +VE ++ N N+++N V +++ A Sbjct: 308 VIDAYSGIGTIGLSVAKHVKEVYGVELIPEAVENSKKNAQLNNISNAHYVCDTAE---NA 364 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV--GMVQAYPHILYISCNPDSLCR 330 M+ N LKD + I VDPPR GL ++ + I YISCN ++ R Sbjct: 365 MK-----NWLKD----GIQPTVILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMAR 415 Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364 D+ + + ++++ D FP T H+E LL + Sbjct: 416 DIKLYQELGYELKKVQPVDLFPQTHHVETVALLSK 450 >gi|327283217|ref|XP_003226338.1| PREDICTED: tRNA (uracil-5-)-methyltransferase homolog A-like [Anolis carolinensis] Length = 631 Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 90/430 (20%), Positives = 165/430 (38%), Gaps = 110/430 (25%) Query: 10 YEQQLAEKVDRLRQMMLAFQ------------------------VPNLQIFRSEPIH--Y 43 YE+QLA+K Q++L L+ +S P+ Y Sbjct: 185 YEEQLAKKKQECEQVLLKLTRELGNNNRALLPWLFLQKEKYSGLCSPLEGVKSSPLQTEY 244 Query: 44 RMRAEFHIWHDGDDLYHIMFDQQTKE-RMRIDYFMPGSLLINALMIEMMATIRLEPLLR- 101 R + EF L I +Q+ K R+ + G+ + +E TI + +++ Sbjct: 245 RNKCEF--------LIGIGLNQEDKTVGFRLGKYKGGTCAV----VEPFETIHIPAVVKK 292 Query: 102 -AKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRL---RDALHARKYQIQLIGRANK 157 AK FQ DY+ S Y + WR+ +R+ +D + + Q + + Sbjct: 293 VAKAFQ-DYIRSTPYNVYSPETY----EGHWRQLTVRISRNQDIMAIVYFNPQKVSKEGL 347 Query: 158 TKI--CLDRDYVDERLTVAGRTLIYRQIENSFTQPN---------AG------------- 193 T++ + + +++ +G T +Y E PN AG Sbjct: 348 TELQTSVAKYFMEGAGKESGITSLYFVEEGQKKSPNREDLALEHVAGNKYIYEDLLGMRF 407 Query: 194 ---------INVHMLEWVLAATK-----GIQGDLLELYCGNGNFSLVLARHFDRVLAVEI 239 +N E + +A + G + +L++ CG G + LA+ +V+ +E+ Sbjct: 408 RISPHAFFQVNTQAAEVLYSAIQDWAQVGPETTVLDVCCGTGTIGITLAKKVKKVIGIEL 467 Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299 + +VE A+ N N +NNV+ +++ + ++ + + VDP Sbjct: 468 CQEAVEDAKVNAQLNDLNNVEFYCGKAEDLVPQL-----------VNSLALQNCITVVDP 516 Query: 300 PRSGLDDATVGMVQAYPH---ILYISCNPDS-------LCRDLS--ILSTTHTIERLALF 347 PR+GL + ++ H ++Y+SCNP + LCR S + R Sbjct: 517 PRAGLHSKVILAIRKSEHLKKLIYVSCNPRAAMNNFIDLCRAPSNRVKGGPFRPVRAMAV 576 Query: 348 DQFPYTRHME 357 D FP+T H E Sbjct: 577 DLFPHTMHYE 586 >gi|162319803|ref|YP_450784.2| 23S rRNA 5-methyluridine methyltransferase [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|91207816|sp|Q2P4L7|RUMA_XANOM RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase Length = 444 Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 58/192 (30%), Positives = 90/192 (46%), Gaps = 18/192 (9%) Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLA 236 L +R ++ F Q NA +N M+ LA D +L+L+CG GNF+L LAR V+ Sbjct: 267 LAFRPLD--FIQVNASLNQKMIVHALALLDAKPDDRVLDLFCGLGNFTLPLARVVREVVG 324 Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296 VE V A+ N N ++N + + + TQ R + F + Sbjct: 325 VEGDAGLVARAKDNAQRNGLDNAQFY---AADLTQDQRNAAWMRQ---------GFDKLL 372 Query: 297 VDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDLSILSTTH--TIERLALFDQFPYT 353 +DPPRSG + + ++ + I+Y+SC+P SL RD L T+ D FP+T Sbjct: 373 LDPPRSGALEVLQQLPLKTFERIVYVSCHPGSLARDAGYLVNEQGFTLVSAGAMDMFPHT 432 Query: 354 RHMECGVLLVRK 365 H+E + R+ Sbjct: 433 AHVESIAVFERR 444 >gi|289662803|ref|ZP_06484384.1| 23S rRNA 5-methyluridine methyltransferase [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 444 Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 58/192 (30%), Positives = 89/192 (46%), Gaps = 18/192 (9%) Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLA 236 L +R ++ F Q NA +N M+ LA D +L+L+CG GNF+L LAR V+ Sbjct: 267 LAFRPLD--FIQVNASLNQKMIAHALALLDAKPDDRVLDLFCGLGNFTLPLARVVREVVG 324 Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296 VE V A+ N N + N + + + TQ R + F + Sbjct: 325 VEGDAGLVARAKDNAQRNGLENAQFY---AADLTQDQR---------NTPWMRQGFDKLL 372 Query: 297 VDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDLSILSTTH--TIERLALFDQFPYT 353 +DPPRSG + + ++ + I+Y+SC+P SL RD L T+ D FP+T Sbjct: 373 LDPPRSGALEVLQQLPLKKFERIVYVSCHPGSLARDAGYLVNEQGFTLVSAGAMDMFPHT 432 Query: 354 RHMECGVLLVRK 365 H+E + R+ Sbjct: 433 AHVESIAVFERR 444 >gi|160935446|ref|ZP_02082828.1| hypothetical protein CLOBOL_00341 [Clostridium bolteae ATCC BAA-613] gi|158441804|gb|EDP19504.1| hypothetical protein CLOBOL_00341 [Clostridium bolteae ATCC BAA-613] Length = 553 Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 50/189 (26%), Positives = 85/189 (44%), Gaps = 20/189 (10%) Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAV 237 +R SF Q N + +L + G+ G +++ YCG G ++ ++ +V+ V Sbjct: 374 FRISSKSFYQVNP-VQTEILYEKALSLAGLTGQELVVDAYCGIGTIGIIASKAAGKVIGV 432 Query: 238 EIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFV 297 E+ + +V A N N + N++ + F M + E + + + Sbjct: 433 ELNQDAVRDAVNNAKMNGIENIRFYCNDAGRFLVNMAEQGE------------KADVVIM 480 Query: 298 DPPRSGLDDA---TVGMVQAYPHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYT 353 DPPRSG + VG + A ++Y+SCNP++L RD+ + + L D FP T Sbjct: 481 DPPRSGSTEEFMDAVGKLGA-EKVVYVSCNPETLARDVRYMKKMGYRAAEAWLVDMFPGT 539 Query: 354 RHMECGVLL 362 H E VLL Sbjct: 540 VHTESIVLL 548 >gi|225861011|ref|YP_002742520.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae Taiwan19F-14] gi|298230452|ref|ZP_06964133.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae str. Canada MDR_19F] gi|298255322|ref|ZP_06978908.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae str. Canada MDR_19A] gi|298502952|ref|YP_003724892.1| TrmA family tRNA (uracil-5-)-methyltransferase [Streptococcus pneumoniae TCH8431/19A] gi|225726771|gb|ACO22622.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae Taiwan19F-14] gi|298238547|gb|ADI69678.1| TrmA family tRNA (uracil-5-)-methyltransferase [Streptococcus pneumoniae TCH8431/19A] gi|332201499|gb|EGJ15569.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae GA47368] Length = 543 Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 45/155 (29%), Positives = 76/155 (49%), Gaps = 15/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ Y G G L +A+H V VE+ +VE ++ N N+++N V +++ A Sbjct: 308 VIDAYSGIGTIGLSVAKHVKEVYGVELIPEAVENSKKNAQLNNISNAHYVCDTAE---NA 364 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV--GMVQAYPHILYISCNPDSLCR 330 M+ N LKD + I VDPPR GL ++ + I YISCN ++ R Sbjct: 365 MK-----NWLKD----GIQPTVILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMAR 415 Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364 D+ + + ++++ D FP T H+E LL + Sbjct: 416 DIKLYQELGYELKKVQPVDLFPQTHHVETVALLSK 450 >gi|168487479|ref|ZP_02711987.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae CDC1087-00] gi|183569696|gb|EDT90224.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae CDC1087-00] Length = 543 Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 45/155 (29%), Positives = 76/155 (49%), Gaps = 15/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ Y G G L +A+H V VE+ +VE ++ N N+++N V +++ A Sbjct: 308 VIDAYSGIGTIGLSVAKHVKEVYGVELIPEAVENSKKNAQLNNISNAHYVCDTAE---NA 364 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV--GMVQAYPHILYISCNPDSLCR 330 M+ N LKD + I VDPPR GL ++ + I YISCN ++ R Sbjct: 365 MK-----NWLKD----GIQPTVILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMAR 415 Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364 D+ + + ++++ D FP T H+E LL + Sbjct: 416 DIKLYQELGYELKKVQPVDLFPQTHHVETVALLSK 450 >gi|148984983|ref|ZP_01818226.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae SP3-BS71] gi|147922681|gb|EDK73798.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae SP3-BS71] gi|301799994|emb|CBW32584.1| putative RNA methyltransferase [Streptococcus pneumoniae OXC141] Length = 543 Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 45/155 (29%), Positives = 76/155 (49%), Gaps = 15/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ Y G G L +A+H V VE+ +VE ++ N N+++N V +++ A Sbjct: 308 VIDAYSGIGTIGLSVAKHVKEVYGVELIPEAVENSKKNAQLNNISNAHYVCDTAE---NA 364 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV--GMVQAYPHILYISCNPDSLCR 330 M+ N LKD + I VDPPR GL ++ + I YISCN ++ R Sbjct: 365 MK-----NWLKD----GIQPTVILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMAR 415 Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364 D+ + + ++++ D FP T H+E LL + Sbjct: 416 DIKLYQELGYELKKVQPVDLFPQTHHVETVALLSK 450 >gi|91207817|sp|Q5H1Q8|RUMA_XANOR RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase Length = 444 Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 58/192 (30%), Positives = 90/192 (46%), Gaps = 18/192 (9%) Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLA 236 L +R ++ F Q NA +N M+ LA D +L+L+CG GNF+L LAR V+ Sbjct: 267 LAFRPLD--FIQVNASLNQKMIVHALALLDAKPDDRVLDLFCGLGNFTLPLARVVREVVG 324 Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296 VE V A+ N N ++N + + + TQ R + F + Sbjct: 325 VEGDAGLVARAKDNAQRNGLDNAQFY---AADLTQDQRNAAWMRQ---------GFDKLL 372 Query: 297 VDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDLSILSTTH--TIERLALFDQFPYT 353 +DPPRSG + + ++ + I+Y+SC+P SL RD L T+ D FP+T Sbjct: 373 LDPPRSGALEVLQQLPLKTFERIVYVSCHPGSLARDAGYLVNEQGFTLVSAGAMDMFPHT 432 Query: 354 RHMECGVLLVRK 365 H+E + R+ Sbjct: 433 AHVESIAVFERR 444 >gi|168494457|ref|ZP_02718600.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae CDC3059-06] gi|183575617|gb|EDT96145.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae CDC3059-06] gi|332075376|gb|EGI85845.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae GA41301] Length = 543 Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 45/155 (29%), Positives = 76/155 (49%), Gaps = 15/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ Y G G L +A+H V VE+ +VE ++ N N+++N V +++ A Sbjct: 308 VIDAYSGIGTIGLSVAKHVKEVYGVELIPEAVENSKKNAQLNNISNAHYVCDTAE---NA 364 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV--GMVQAYPHILYISCNPDSLCR 330 M+ N LKD + I VDPPR GL ++ + I YISCN ++ R Sbjct: 365 MK-----NWLKD----GIQPTVILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMAR 415 Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364 D+ + + ++++ D FP T H+E LL + Sbjct: 416 DIKLYQELGYELKKVQPVDLFPQTHHVETVALLSK 450 >gi|78486531|ref|YP_392456.1| RNA methyltransferase [Thiomicrospira crunogena XCL-2] gi|78364817|gb|ABB42782.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Thiomicrospira crunogena XCL-2] Length = 407 Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 52/189 (27%), Positives = 88/189 (46%), Gaps = 28/189 (14%) Query: 186 SFTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241 F Q NA +N M L+W L K + +L+L+CG GNF+L +A+ V+ +E Sbjct: 222 GFVQVNAEMNEQMVNKALDW-LDLNK--EQRVLDLFCGVGNFTLPIAQQVKEVVGIEGET 278 Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY----RFKTIFV 297 V+ A++N + H F QA + KD+ ++ ++ + + Sbjct: 279 DLVQMAQHNASRAHCEQAT--------FYQA-------DLFKDVTPQNWFRKQKYDRVLL 323 Query: 298 DPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRH 355 DP R G G+ Q I+Y+SCN +L RD+ L + +++ + D FP+T H Sbjct: 324 DPGRQGAYQLCKGLGQLKADKIVYVSCNASTLIRDVKELEKQGYQLKKAIMVDMFPHTSH 383 Query: 356 MECGVLLVR 364 E L++ Sbjct: 384 TEVMAQLIK 392 >gi|50121596|ref|YP_050763.1| 23S rRNA methyluridine methyltransferase [Pectobacterium atrosepticum SCRI1043] gi|97273716|sp|Q6D3S2|RUMB_ERWCT RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName: Full=23S rRNA(M-5-U747)-methyltransferase gi|49612122|emb|CAG75572.1| putative RNA methyltransferase [Pectobacterium atrosepticum SCRI1043] Length = 375 Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 44/155 (28%), Positives = 74/155 (47%), Gaps = 18/155 (11%) Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271 + +L+CG G F L A R+ +EI+ ++ AR + + +V+ + S +F Sbjct: 236 SMWDLFCGVGGFGLHCASSEMRLTGIEISAEAIACARRSAEQLGLKHVEFQALDSTQFAT 295 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLC 329 A + D+ + V+PPR G+ + A +ILY SCN +S+ Sbjct: 296 AK------AEIPDL---------VLVNPPRRGIGSELCSYLSRMAPDYILYSSCNAESMA 340 Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 +D++ L+ + R+ LFD FP+T H E LL R Sbjct: 341 KDMTELANYRAL-RVQLFDMFPHTAHYEVLTLLKR 374 >gi|259500506|ref|ZP_05743408.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners DSM 13335] gi|259167890|gb|EEW52385.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners DSM 13335] Length = 461 Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 41/156 (26%), Positives = 74/156 (47%), Gaps = 15/156 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L++ Y G G ++ + +V+ +E ++ A++N N+V N + + S ++ Sbjct: 318 LVDAYAGVGTLGILASEKVKQVIGIESIPEAIADAQFNCRLNNVKNAEYINGSVEKILPQ 377 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330 M+++ + VDPPR+GL+ V ++ P +YISCNP +L R Sbjct: 378 MQKD------------GIAIDALIVDPPRTGLNKQLVKTLLTCKPKDFVYISCNPSTLAR 425 Query: 331 DLSILSTTHTIERLALFDQFPYTRHME-CGVLLVRK 365 DL +LS + + + D P T E L++RK Sbjct: 426 DLVLLSQAYDVRLIQPVDMMPQTPRWEGIAKLVLRK 461 >gi|221056410|ref|XP_002259343.1| hypothetical protein, conserved in Plasmodium species [Plasmodium knowlesi strain H] gi|193809414|emb|CAQ40116.1| hypothetical protein, conserved in Plasmodium species [Plasmodium knowlesi strain H] Length = 825 Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 47/167 (28%), Positives = 76/167 (45%), Gaps = 29/167 (17%) Query: 213 LLELYCGNGNFSLVLARHFD----RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268 + +L CG G S+ A ++ ++I + S+ A N N + N K Sbjct: 672 IFDLCCGTGTISICAANELKGKDVHIVGIDICEDSIICANKNAEMNKIKNYK-------- 723 Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV---QAYPHILYISCNP 325 F Q E N +K++ + I VDPPRSGL ++ + ++ Q I+Y+SCNP Sbjct: 724 FIQGRVEELFANEIKNVSEKNSNV-IIIVDPPRSGLANSVLNILSSNQLIGQIIYVSCNP 782 Query: 326 DSLCRDLSILSTTHTI--------ERLALFDQFPYTRHMECGVLLVR 364 +L I + TH + + L D FP+T H+EC +V+ Sbjct: 783 ITL-----ISNVTHVLFQNENLRMKNLVFVDMFPHTFHLECITNIVK 824 >gi|149012968|ref|ZP_01833857.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae SP19-BS75] gi|169832868|ref|YP_001694472.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae Hungary19A-6] gi|303255584|ref|ZP_07341635.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae BS455] gi|303260473|ref|ZP_07346441.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae SP-BS293] gi|303262830|ref|ZP_07348767.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae SP14-BS292] gi|303265300|ref|ZP_07351210.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae BS397] gi|303266507|ref|ZP_07352394.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae BS457] gi|303268374|ref|ZP_07354170.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae BS458] gi|147763121|gb|EDK70062.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae SP19-BS75] gi|168995370|gb|ACA35982.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae Hungary19A-6] gi|301801862|emb|CBW34580.1| putative RNA methyltransferase [Streptococcus pneumoniae INV200] gi|302597440|gb|EFL64535.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae BS455] gi|302636028|gb|EFL66526.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae SP14-BS292] gi|302638385|gb|EFL68852.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae SP-BS293] gi|302642095|gb|EFL72446.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae BS458] gi|302643958|gb|EFL74218.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae BS457] gi|302645165|gb|EFL75402.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae BS397] Length = 543 Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 45/155 (29%), Positives = 76/155 (49%), Gaps = 15/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ Y G G L +A+H V VE+ +VE ++ N N+++N V +++ A Sbjct: 308 VIDAYSGIGTIGLSVAKHVKEVYGVELIPEAVENSKKNAQLNNISNAHYVCDTAE---NA 364 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV--GMVQAYPHILYISCNPDSLCR 330 M+ N LKD + I VDPPR GL ++ + I YISCN ++ R Sbjct: 365 MK-----NWLKD----GIQPTVILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMAR 415 Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364 D+ + + ++++ D FP T H+E LL + Sbjct: 416 DIKLYQELGYELKKVQPVDLFPQTHHVETVALLSK 450 >gi|303263128|ref|ZP_07349055.1| RNA methyltransferase, TrmA family protein [Streptococcus pneumoniae SP14-BS292] gi|302635727|gb|EFL66235.1| RNA methyltransferase, TrmA family protein [Streptococcus pneumoniae SP14-BS292] Length = 443 Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 40/148 (27%), Positives = 65/148 (43%), Gaps = 14/148 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L++ YCG G A+ + ++I ++E A+ N +N +++E Sbjct: 308 LIDAYCGVGTIGFAFAKKVKTLRGMDIIPEAIEDAKRNAKRMGFDNTHYEAGTAEEIIPR 367 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330 +E YR + VDPPR+GLDD + + Y ++YISCN +L R Sbjct: 368 WYKE------------GYRADALIVDPPRTGLDDKLLDTILTYVPEKMVYISCNVSTLAR 415 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMEC 358 DL L + + + D FP+T E Sbjct: 416 DLVRLVEVYDLHYIQSVDMFPHTARTEA 443 >gi|148994234|ref|ZP_01823527.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae SP9-BS68] gi|168488850|ref|ZP_02713049.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae SP195] gi|168576242|ref|ZP_02722136.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae MLV-016] gi|147927375|gb|EDK78406.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae SP9-BS68] gi|183572483|gb|EDT93011.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae SP195] gi|183577973|gb|EDT98501.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae MLV-016] gi|332073360|gb|EGI83839.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae GA17570] Length = 543 Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 45/155 (29%), Positives = 76/155 (49%), Gaps = 15/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ Y G G L +A+H V VE+ +VE ++ N N+++N V +++ A Sbjct: 308 VIDAYSGIGTIGLSVAKHVKEVYGVELIPEAVENSKKNAQLNNISNAHYVCDTAE---NA 364 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV--GMVQAYPHILYISCNPDSLCR 330 M+ N LKD + I VDPPR GL ++ + I YISCN ++ R Sbjct: 365 MK-----NWLKD----GIQPTVILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMAR 415 Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364 D+ + + ++++ D FP T H+E LL + Sbjct: 416 DIKLYQELGYELKKVQPVDLFPQTHHVETVALLSK 450 >gi|145300530|ref|YP_001143371.1| RNA methyltransferase [Aeromonas salmonicida subsp. salmonicida A449] gi|142853302|gb|ABO91623.1| RNA methyltransferase [Aeromonas salmonicida subsp. salmonicida A449] Length = 456 Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 41/159 (25%), Positives = 78/159 (49%), Gaps = 16/159 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + ++YCG G SL LA +V+ +E + ++ AR N A N + + + +++ Sbjct: 310 VFDIYCGIGTISLFLAGKAAKVVGIESVESAISDARRNAALNGIEHTEFHVGKAEQL--- 366 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCR 330 + ++ + +DPPR G D A + +V P ++Y+SCNP +L R Sbjct: 367 ---------MPELYAQGVTADVVVMDPPRKGCDKAVLQTLVAMAPRRLVYVSCNPQTLAR 417 Query: 331 DLS-ILSTTHTIERLALFDQFPYTRHMECGVLLVRKPSG 368 DL+ ++ ++ + D FP++ H+E V + P+G Sbjct: 418 DLAWLVKQGFMLDEVQPVDMFPHSMHVE-AVARLSLPAG 455 >gi|152965530|ref|YP_001361314.1| deoxyribonuclease/rho motif-related TRAM [Kineococcus radiotolerans SRS30216] gi|151360047|gb|ABS03050.1| deoxyribonuclease/rho motif-related TRAM [Kineococcus radiotolerans SRS30216] Length = 450 Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 64/212 (30%), Positives = 98/212 (46%), Gaps = 21/212 (9%) Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGN 222 R +V+ER+TV G +R F Q + + E VLAA G+ L+LY G G Sbjct: 253 RTWVEERVTVRGEDHAFRVGGAGFWQVHPAAPTLLGEAVLAALDPRPGESALDLYSGAGL 312 Query: 223 FSLVLARHFD---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279 F+ +LA VLAVE + +V AR ++ + + V + + +A Sbjct: 313 FTALLADAVGAGGSVLAVEGEERAVRDARRSL-----HGREQVELWAGAVEEA------- 360 Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHIL--YISCNPDSLCRDLSILST 337 L D ++ + R + +DPPRSG V V A Y++C+P +L RD + L+ Sbjct: 361 --LVDEELTARRVDVVVLDPPRSGAGREAVAAVAALGARAVAYVACDPAALARDTASLAE 418 Query: 338 -THTIERLALFDQFPYTRHMECGVLLVRKPSG 368 + + L FD FP T H+EC V + G Sbjct: 419 HGYVLAGLRAFDLFPQTHHVECVARFVPRAQG 450 >gi|328479439|gb|EGF48724.1| RNA methyltransferase [Lactobacillus rhamnosus MTCC 5462] Length = 193 Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 56/209 (26%), Positives = 88/209 (42%), Gaps = 27/209 (12%) Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATK-----GIQGDLLELYC 218 + Y+ E T++GRT ++ +F Q +N E + A K L++ YC Sbjct: 5 QPYIQE--TLSGRT--FQLSPQAFLQ----LNPKQTEQLYAIAKDALQLAPDDTLIDAYC 56 Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278 G G + LA + ++ ++ A+ N N NN + E Sbjct: 57 GIGTVGMSLANRHQSIYGMDTIPEAIADAKANAKNNGFNNTHYF---------VGKAETL 107 Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCRDLSILS 336 F + IH + VDPPRSGL+ + ++Q P YISCNP +L RDL L+ Sbjct: 108 FPKWLKEGIHP---NAVIVDPPRSGLERPFIDALLQLNPQKFAYISCNPSTLARDLVPLA 164 Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVRK 365 + ++ + D FP T E V R+ Sbjct: 165 KHYQVDWIQSIDMFPQTARCEAVVKFTRR 193 >gi|237733145|ref|ZP_04563626.1| conserved hypothetical protein [Mollicutes bacterium D7] gi|229383827|gb|EEO33918.1| conserved hypothetical protein [Coprobacillus sp. D7] Length = 448 Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 76/344 (22%), Positives = 155/344 (45%), Gaps = 39/344 (11%) Query: 35 IFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINAL---MIEMM 91 I +P HYR + + + G+ L + Q++ E + + + L N + + E+M Sbjct: 116 IMMEKPWHYRNKVQMPVGVKGNHLVTGFYKQKSNEIIPCENCYIQNELSNQITNRVKELM 175 Query: 92 ATIRLEPLLR-AKLFQIDYLTSQ----SDQAIVTLIYHR--------LLDDAWRECAIRL 138 ++ P + A I ++ ++ +D+ ++ LI +R L++ +E + + Sbjct: 176 EEFKIYPYDKLAHQGNIKHILTKHGYHTDEVMLVLISYRNKIKDMDKLVEIITKEFPM-I 234 Query: 139 RDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHM 198 + + ++ + + I Y+ + T+ G Y+ SF Q N I V Sbjct: 235 KTVIQNINHRTDNVILGEQEVILFGNGYIYD--TLLGNK--YKISLKSFYQVNP-IQVEK 289 Query: 199 LEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV 256 L G+ + +L+ YCG G +L +A++ +V VEI + +++ A+ N N++ Sbjct: 290 LYSKAIEFAGLSKEDIVLDAYCGIGTITLSVAKYVKKVYGVEIVETAIDDAKNNAVLNNI 349 Query: 257 NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAY 315 +N + + ++ + N+ + +D+ +FVDPPR G + ++QA Sbjct: 350 SNAEFKCSDAGKYMLEL-----VNQDQHLDV-------VFVDPPRKGCSTEFLDNLIQAE 397 Query: 316 P-HILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHME 357 P I+YISC+ + RD+ L + + D FP+T H+E Sbjct: 398 PKKIIYISCDVATQARDIKYLQEFGYHADVCQPVDMFPHTTHIE 441 >gi|212715602|ref|ZP_03323730.1| hypothetical protein BIFCAT_00501 [Bifidobacterium catenulatum DSM 16992] gi|212660969|gb|EEB21544.1| hypothetical protein BIFCAT_00501 [Bifidobacterium catenulatum DSM 16992] Length = 421 Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 68/210 (32%), Positives = 99/210 (47%), Gaps = 28/210 (13%) Query: 169 ERLTVAGRTLIYRQIENSFTQ-----PNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGN 222 E++TVAG Y F Q P A N H+++ V G + L +LY G+G Sbjct: 224 EKVTVAGHEFEYNVDAGGFWQMHRHAPIALTN-HVIDLVRGELDGAKSACLWDLYSGSGL 282 Query: 223 FSLVLAR---HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279 F+L LA R+L+VE K +V A+ N+ H+ NV R+ T A R Sbjct: 283 FTLPLATLTAERTRMLSVEGGKTAVRNAQRNLRHIHLGNVD-ARVGDVAKTLANVR---- 337 Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDAT---VGMVQAYPHILYISCNPDSLCRDLSIL- 335 N L D+ + +DPPR+G + V+A + YI+C+P SL RD + L Sbjct: 338 NDLAKPDV-------VVLDPPRAGARAKVCRQIAEVEAKSAV-YIACDPASLARDTATLV 389 Query: 336 STTHTIERLALFDQFPYTRHMECGVLLVRK 365 S + + + FD +P T H+E V L RK Sbjct: 390 SLGYELADIRAFDIYPMTHHVET-VALFRK 418 >gi|289670316|ref|ZP_06491391.1| 23S rRNA 5-methyluridine methyltransferase [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 444 Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 58/192 (30%), Positives = 89/192 (46%), Gaps = 18/192 (9%) Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLA 236 L +R ++ F Q NA +N M+ LA D +L+L+CG GNF+L LAR V+ Sbjct: 267 LAFRPLD--FIQVNASLNQKMIAHALALLDAKPDDRVLDLFCGLGNFTLPLARVVREVVG 324 Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296 VE V A+ N N + N + + + TQ R + F + Sbjct: 325 VEGDAGLVARAKDNAQRNGLENAQFY---AADLTQDQR---------NTPWMRQGFDKLL 372 Query: 297 VDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDLSILSTTH--TIERLALFDQFPYT 353 +DPPRSG + + ++ + I+Y+SC+P SL RD L T+ D FP+T Sbjct: 373 LDPPRSGALEVLQQLPLKKFERIVYVSCHPGSLARDAGYLVNEQGFTLVSAGAMDMFPHT 432 Query: 354 RHMECGVLLVRK 365 H+E + R+ Sbjct: 433 AHVESIAVFERR 444 >gi|327470379|gb|EGF15835.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis SK330] Length = 463 Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 43/157 (27%), Positives = 67/157 (42%), Gaps = 14/157 (8%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L++ YCG G A+ + ++I ++E A+ N N +++E Sbjct: 308 LIDAYCGVGTIGFAFAKRVKSLRGMDIIPEAIEDAKRNAKRMGFTNTLYEAGTAEEIIPR 367 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCR 330 E YR + VDPPR GLDD + + Y ++Y+SCN +L R Sbjct: 368 WYAE------------GYRANALIVDPPRIGLDDKLLETIVRYAPEKMVYVSCNVSTLAR 415 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRKPS 367 DL L + + + D FP+T E V L +K S Sbjct: 416 DLVKLCQVYDVHYIQSVDMFPHTARTEAVVKLSKKDS 452 >gi|290580745|ref|YP_003485137.1| putative RNA methyltransferase [Streptococcus mutans NN2025] gi|254997644|dbj|BAH88245.1| putative RNA methyltransferase [Streptococcus mutans NN2025] Length = 454 Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 43/153 (28%), Positives = 70/153 (45%), Gaps = 15/153 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ Y G G L A+ V VE+ + +V A N A N++ NV V S+++ + Sbjct: 308 VIDAYSGIGTIGLSFAKKVKDVYGVEVIEAAVRDAEKNAALNNITNVHYVADSAEKAMAS 367 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCR 330 + + I VDPPR GL ++ + A I YISC P ++ R Sbjct: 368 WSK------------RGIKPDVILVDPPRKGLTESFIEASTAMQPRKITYISCAPATMAR 415 Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLL 362 D+ + + + ++ D FP T H+EC LL Sbjct: 416 DVKLYEELGYKLVKVQPVDLFPQTHHVECVSLL 448 >gi|326776084|ref|ZP_08235349.1| deoxyribonuclease/rho motif-related TRAM [Streptomyces cf. griseus XylebKG-1] gi|326656417|gb|EGE41263.1| deoxyribonuclease/rho motif-related TRAM [Streptomyces cf. griseus XylebKG-1] Length = 442 Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 46/155 (29%), Positives = 74/155 (47%), Gaps = 22/155 (14%) Query: 214 LELYCGNGNFSLVLARHFDR---VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270 L+LYCG G F+ + + VL +E K +VE AR+N+ ++ VR+ + Sbjct: 297 LDLYCGVGLFAGAIGQRLGEKGAVLGIESGKRAVEDARHNL-----KDLDRVRIEHGKVD 351 Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSL 328 Q + R + + D+ I +DPPR+G V + I Y++C+P +L Sbjct: 352 QVLPR----TGITECDL-------IVLDPPRAGAGKQVVKHLSGLGARRIAYVACDPAAL 400 Query: 329 CRDLSIL-STTHTIERLALFDQFPYTRHMECGVLL 362 RDL+ + + L FD FP T H+EC +L Sbjct: 401 ARDLAYFRDGGYKVRTLRAFDLFPMTHHVECVAIL 435 >gi|182435447|ref|YP_001823166.1| putative RNA methyltransferase [Streptomyces griseus subsp. griseus NBRC 13350] gi|178463963|dbj|BAG18483.1| putative RNA methyltransferase [Streptomyces griseus subsp. griseus NBRC 13350] Length = 442 Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 46/155 (29%), Positives = 74/155 (47%), Gaps = 22/155 (14%) Query: 214 LELYCGNGNFSLVLARHFDR---VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270 L+LYCG G F+ + + VL +E K +VE AR+N+ ++ VR+ + Sbjct: 297 LDLYCGVGLFAGAIGQRLGEKGAVLGIESGKRAVEDARHNL-----KDLDRVRIEHGKVD 351 Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSL 328 Q + R + + D+ I +DPPR+G V + I Y++C+P +L Sbjct: 352 QVLPR----TGITECDL-------IVLDPPRAGAGKQVVKHLSGLGARRIAYVACDPAAL 400 Query: 329 CRDLSIL-STTHTIERLALFDQFPYTRHMECGVLL 362 RDL+ + + L FD FP T H+EC +L Sbjct: 401 ARDLAYFRDGGYKVRTLRAFDLFPMTHHVECVAIL 435 >gi|260833806|ref|XP_002611903.1| hypothetical protein BRAFLDRAFT_106799 [Branchiostoma floridae] gi|229297275|gb|EEN67912.1| hypothetical protein BRAFLDRAFT_106799 [Branchiostoma floridae] Length = 650 Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 45/157 (28%), Positives = 74/157 (47%), Gaps = 23/157 (14%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +L++ CG G L LA+H +V+ VE+ + +VE A+ N N ++N + + +++ Sbjct: 494 VLDVCCGTGTIGLTLAKHVKKVIGVELCQQAVEDAKVNANINGIDNAEFLCGKAEDILPD 553 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH---ILYISCNPDS-- 327 + R RL D+ VDPPR+GL + +++ + ++Y+SCN S Sbjct: 554 LVR-----RLYGTDL------VAVVDPPRAGLHTRVISVLRKCSNLTKLVYVSCNSQSAM 602 Query: 328 -----LCRDLS--ILSTTHTIERLALFDQFPYTRHME 357 LCR S R D FP+TRH E Sbjct: 603 PNFIDLCRPTSNKFKGAAFRPVRAVPVDLFPHTRHSE 639 >gi|312871819|ref|ZP_07731907.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners LEAF 3008A-a] gi|311092761|gb|EFQ51117.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners LEAF 3008A-a] Length = 457 Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 41/156 (26%), Positives = 74/156 (47%), Gaps = 15/156 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L++ Y G G ++ + +V+ +E ++ A++N N+V N + + S ++ Sbjct: 314 LVDAYAGVGTLGILASEKVKQVIGIESIPEAIADAQFNCRLNNVKNAEYINGSVEKILPQ 373 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330 M+++ + VDPPR+GL+ V ++ P +YISCNP +L R Sbjct: 374 MQKD------------GIAIDALIVDPPRTGLNKQLVKTLLTCKPKDFVYISCNPSTLAR 421 Query: 331 DLSILSTTHTIERLALFDQFPYTRHME-CGVLLVRK 365 DL +LS + + + D P T E L++RK Sbjct: 422 DLVLLSQAYDVRLIQPVDMMPQTPRWEGIAKLVLRK 457 >gi|313618460|gb|EFR90466.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria innocua FSL S4-378] Length = 129 Score = 66.2 bits (160), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 41/134 (30%), Positives = 65/134 (48%), Gaps = 16/134 (11%) Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293 V ++I S+E A+ N N + NV +++ +E +R Sbjct: 6 VRGMDIIPESIEDAKRNAEKNGIENVYYEVGKAEDVLPKWVKE------------GFRPD 53 Query: 294 TIFVDPPRSGLDDATVG---MVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQF 350 + VDPPRSG D + V+A ++Y+SCNP +L RDL++L+ + I + D F Sbjct: 54 AVIVDPPRSGCDQGLIKSLLQVEAK-QLVYVSCNPSTLARDLALLAKKYQIRYMQPVDMF 112 Query: 351 PYTRHMECGVLLVR 364 P T H+E VL+ R Sbjct: 113 PQTAHVETVVLMSR 126 >gi|167756546|ref|ZP_02428673.1| hypothetical protein CLORAM_02083 [Clostridium ramosum DSM 1402] gi|167702721|gb|EDS17300.1| hypothetical protein CLORAM_02083 [Clostridium ramosum DSM 1402] Length = 448 Score = 66.2 bits (160), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 41/148 (27%), Positives = 77/148 (52%), Gaps = 15/148 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +L+ YCG G +L +A++ +V VEI + +++ A+ N N+++N + + ++ Sbjct: 306 VLDAYCGIGTITLSVAKYVKKVYGVEIVETAIDDAKNNAVLNNISNAEFKCSDAGKYMLE 365 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCR 330 + N+ + +D+ +FVDPPR G + ++QA P I+YISC+ + R Sbjct: 366 L-----VNQDQHLDV-------VFVDPPRKGCSTEFLDNLIQAEPKKIIYISCDVATQAR 413 Query: 331 DLSILST-THTIERLALFDQFPYTRHME 357 D+ L + + D FP+T H+E Sbjct: 414 DIKYLQEFGYHADVCQPVDMFPHTTHIE 441 >gi|295101716|emb|CBK99261.1| 23S rRNA m(5)U-1939 methyltransferase [Faecalibacterium prausnitzii L2-6] Length = 548 Score = 66.2 bits (160), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 49/161 (30%), Positives = 76/161 (47%), Gaps = 12/161 (7%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 LL+LYCG G L +A ++ VEI ++++A+ AN V S+ F Sbjct: 310 LLDLYCGMGTIGLSMADRCRELIGVEIVPEAIDSAK----ANAARMGDAVAAKSRFFCAD 365 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYP-HILYISCNPDSLCR 330 + + + R I +DPPR G D+ T+ V Q P ++Y+SCN + R Sbjct: 366 AGQAAARLAAEGL-----RPDVIMLDPPRKGCDETTLSAVAQMSPRRVVYVSCNSSTAAR 420 Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVRKPSGWH 370 D + L + E++ D FP TRH+E VLL + + H Sbjct: 421 DAAWLEEHGYHAEKVQPVDLFPRTRHVETVVLLSKLNTKQH 461 >gi|302899107|ref|XP_003047981.1| predicted protein [Nectria haematococca mpVI 77-13-4] gi|256728913|gb|EEU42268.1| predicted protein [Nectria haematococca mpVI 77-13-4] Length = 547 Score = 66.2 bits (160), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 46/162 (28%), Positives = 79/162 (48%), Gaps = 23/162 (14%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN--VKIVRMSSKEFT 270 L++ Y G+G F++ L+ F + ++IA S+ A N A N +N K + + E Sbjct: 394 LIDAYSGSGLFTITLSSLFQHSIGIDIAADSIAYASRNAALNGLNEDRCKFIAADAGELF 453 Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSL 328 +++ +NR + + + +DPPR G D +G ++ + +LY+SCN + Sbjct: 454 KSV----TYNRDETV---------VVLDPPRKGCDADFLGQLRKFGPRRVLYVSCNVHTQ 500 Query: 329 CRDLSIL------STTHTIERLALFDQFPYTRHMECGVLLVR 364 RD+ +L + IE L FD FP T H+E +L R Sbjct: 501 ARDVGVLVRGEGEGERYEIESLRGFDFFPQTGHVEGVAILNR 542 >gi|308535284|ref|YP_002138867.2| RNA methyltransferase, TrmA family [Geobacter bemidjiensis Bem] gi|308052629|gb|ACH39071.2| RNA methyltransferase, TrmA family [Geobacter bemidjiensis Bem] Length = 444 Score = 66.2 bits (160), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 74/292 (25%), Positives = 121/292 (41%), Gaps = 25/292 (8%) Query: 82 LINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDA 141 L+N + E+ + P L + Q+D ++I Y + +C + R Sbjct: 168 LLNQALAEVRGILPRLPQLEG-ITQVDLAMGDDGESIAVFHYRGKDAASLLDCLLAARPE 226 Query: 142 LHARKYQIQLIGRANKTKICLDRDY----VDERLTVAGRTLIYRQIENSFTQPNAGINVH 197 L + G + D V L R + R F+Q N N+ Sbjct: 227 LPSVTGAYVKTGEKGEMSAVFGVDSLSYGVPAGLFPGSREVRLRFSRGGFSQVNYRQNLE 286 Query: 198 ML----EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAA 253 ++ EW A +G + +L+LYCGNGN S+ +A V+ VE PS+ A N A Sbjct: 287 LIKTVGEWG-ALREGAR--VLDLYCGNGNISVPIAPLVGEVVGVEGYAPSIVDAAANAEA 343 Query: 254 NHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ 313 N N + + + + + + +E +F + +DPPR+G + A + Sbjct: 344 NGALNARYLVGDAALSVRRLAKRKE------------KFDLVVLDPPRAGAEAAGELAIL 391 Query: 314 AYPHILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 A ILY+SC+P +L RDL + + + R D FP T H+E L+R Sbjct: 392 APERILYVSCDPATLARDLGQLCGAGYRVARSKPVDMFPQTYHLESVTELIR 443 >gi|258508829|ref|YP_003171580.1| RNA methyltransferase [Lactobacillus rhamnosus GG] gi|257148756|emb|CAR87729.1| RNA methyltransferase [Lactobacillus rhamnosus GG] gi|259650133|dbj|BAI42295.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus rhamnosus GG] Length = 455 Score = 66.2 bits (160), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 55/216 (25%), Positives = 92/216 (42%), Gaps = 29/216 (13%) Query: 158 TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATK-----GIQGD 212 +++ + Y+ E T++GRT ++ +F Q +N E + A K Sbjct: 261 SRLLAGQPYIQE--TLSGRT--FQLSPQAFLQ----LNPKQTEQLYAIAKDALQLAPDDT 312 Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK-IVRMSSKEFTQ 271 L++ YCG G + LA + ++ ++ A+ N N NN V + F + Sbjct: 313 LIDAYCGIGTVGMSLANRHQSIYGMDTIPEAIADAKANAKNNGFNNTHYFVGKAETLFPK 372 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLC 329 ++ R + VDPPRSGL+ + ++Q P YISCNP +L Sbjct: 373 WLKE-------------GIRPNAVIVDPPRSGLERPFIDALLQLSPQKFAYISCNPSTLA 419 Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 RDL L+ + ++ + D FP T E V R+ Sbjct: 420 RDLVPLAKHYQVDWIQSIDMFPQTARCEAVVKFTRR 455 >gi|56475832|ref|YP_157421.1| 23S rRNA 5-methyluridine methyltransferase [Aromatoleum aromaticum EbN1] gi|81358490|sp|Q5P841|RUMA_AROAE RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|56311875|emb|CAI06520.1| 23S rRNA (Uracil-5-)-methyltransferase [Aromatoleum aromaticum EbN1] Length = 433 Score = 66.2 bits (160), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 54/184 (29%), Positives = 83/184 (45%), Gaps = 16/184 (8%) Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 FTQ N IN ++ L G+ + +L+CG GNFSL +AR V+ VE ++ V Sbjct: 261 FTQVNIDINRLLIRRSLQLLDPRPGERIADLFCGLGNFSLPIARCGATVVGVEGSESLVR 320 Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD 305 A N N ++ EF A E + L + R + +DPPR G Sbjct: 321 RAAKNARRNGLHG-------RSEFHAANLFEATEDSLAALG----RLDKLLIDPPREGAI 369 Query: 306 DA--TVGMVQAYPHILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTRHMECGVL 361 + +Q+ I+Y+SCNP +L RD ++L + + + + FP T H+E L Sbjct: 370 AVVKALSTLQSPARIVYVSCNPATLARDAAVLVHEKGYVLRGAGIANMFPQTSHVESIAL 429 Query: 362 LVRK 365 R Sbjct: 430 FERN 433 >gi|302191196|ref|ZP_07267450.1| tRNA (uracil-5-)-methyltransferase related enzyme [Lactobacillus iners AB-1] Length = 457 Score = 66.2 bits (160), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 41/156 (26%), Positives = 74/156 (47%), Gaps = 15/156 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L++ Y G G ++ + +V+ +E ++ A++N N+V N + + S ++ Sbjct: 314 LVDAYAGVGTLGILASEKVKQVIGIESIPEAIADAQFNCRLNNVKNAEYINGSVEKILPQ 373 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330 M+++ + VDPPR+GL+ V ++ P +YISCNP +L R Sbjct: 374 MQKD------------GIAIDALIVDPPRTGLNKQLVKTLLTCKPKDFVYISCNPSTLAR 421 Query: 331 DLSILSTTHTIERLALFDQFPYTRHME-CGVLLVRK 365 DL +LS + + + D P T E L++RK Sbjct: 422 DLVLLSQAYDVRLIQPVDMMPQTPRWEGIAKLVLRK 457 >gi|329947297|ref|ZP_08294564.1| putative 23S rRNA (uracil-5-)-methyltransferase RumB [Actinomyces sp. oral taxon 170 str. F0386] gi|328525514|gb|EGF52558.1| putative 23S rRNA (uracil-5-)-methyltransferase RumB [Actinomyces sp. oral taxon 170 str. F0386] Length = 412 Score = 66.2 bits (160), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 50/153 (32%), Positives = 76/153 (49%), Gaps = 8/153 (5%) Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274 +L+CG G F+L LA RVL VE++ +++ A A ++ +VR E A Sbjct: 264 DLFCGVGGFALALAAPGRRVLGVEVSASAIDGAHAAAALMGLDP-ALVRF---EAGDARV 319 Query: 275 REREFNRLKDIDIHSYRFKTIFV-DPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRD 331 + + + R + V +PPR G+ + G ++A +LY SCNP +L D Sbjct: 320 LDPAAPGAGALGVCGARGPDLLVVNPPRRGIGERLAGRIEASGVERVLYSSCNPRTLAAD 379 Query: 332 LSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 L+ L + + R LFD FP+T H E V LVR Sbjct: 380 LARLPSMRVV-RSRLFDMFPHTDHAEVLVELVR 411 >gi|325912561|ref|ZP_08174944.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners UPII 60-B] gi|325477982|gb|EGC81111.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners UPII 60-B] Length = 457 Score = 66.2 bits (160), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 41/156 (26%), Positives = 74/156 (47%), Gaps = 15/156 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L++ Y G G ++ + +V+ +E ++ A++N N+V N + + S ++ Sbjct: 314 LVDAYAGVGTLGILASEKVKQVIGIESIPEAIADAQFNCRLNNVKNAEYINGSVEKILPQ 373 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330 M+++ + VDPPR+GL+ V ++ P +YISCNP +L R Sbjct: 374 MQKD------------GIAIDALIVDPPRTGLNKQLVKTLLTCKPKDFVYISCNPSTLAR 421 Query: 331 DLSILSTTHTIERLALFDQFPYTRHME-CGVLLVRK 365 DL +LS + + + D P T E L++RK Sbjct: 422 DLVLLSQAYDVRLIQPVDMMPQTPRWEGIAKLVLRK 457 >gi|239944893|ref|ZP_04696830.1| putative RNA methyltransferase [Streptomyces roseosporus NRRL 15998] gi|239991359|ref|ZP_04712023.1| putative RNA methyltransferase [Streptomyces roseosporus NRRL 11379] gi|291448358|ref|ZP_06587748.1| RNA methyltransferase [Streptomyces roseosporus NRRL 15998] gi|291351305|gb|EFE78209.1| RNA methyltransferase [Streptomyces roseosporus NRRL 15998] Length = 442 Score = 66.2 bits (160), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 46/155 (29%), Positives = 74/155 (47%), Gaps = 22/155 (14%) Query: 214 LELYCGNGNFSLVLARHFDR---VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270 L+LYCG G F+ + + VL +E K +VE AR+N+ ++ VR+ + Sbjct: 297 LDLYCGVGLFAGAIGQRLGEKGAVLGIESGKRAVEDARHNL-----KDLDRVRIEHGKVD 351 Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSL 328 Q + R + + D+ I +DPPR+G V + I Y++C+P +L Sbjct: 352 QVLPR----TGITECDL-------IVLDPPRAGAGKQVVKHLSGLGARKIAYVACDPAAL 400 Query: 329 CRDLSIL-STTHTIERLALFDQFPYTRHMECGVLL 362 RDL+ + + L FD FP T H+EC +L Sbjct: 401 ARDLAYFREGGYRVRTLRAFDLFPMTHHVECVAIL 435 >gi|312873042|ref|ZP_07733102.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners LEAF 2062A-h1] gi|312874144|ref|ZP_07734178.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners LEAF 2052A-d] gi|312875643|ref|ZP_07735644.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners LEAF 2053A-b] gi|329920153|ref|ZP_08276984.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners SPIN 1401G] gi|311088897|gb|EFQ47340.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners LEAF 2053A-b] gi|311090214|gb|EFQ48624.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners LEAF 2052A-d] gi|311091564|gb|EFQ49948.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners LEAF 2062A-h1] gi|328936607|gb|EGG33051.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners SPIN 1401G] Length = 457 Score = 66.2 bits (160), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 41/156 (26%), Positives = 74/156 (47%), Gaps = 15/156 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L++ Y G G ++ + +V+ +E ++ A++N N+V N + + S ++ Sbjct: 314 LVDAYAGVGTLGILASEKVKQVIGIESIPEAIADAQFNCRLNNVKNAEYINGSVEKILPQ 373 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330 M+++ + VDPPR+GL+ V ++ P +YISCNP +L R Sbjct: 374 MQKD------------GIAIDALIVDPPRTGLNKQLVKTLLTCKPKDFVYISCNPSTLAR 421 Query: 331 DLSILSTTHTIERLALFDQFPYTRHME-CGVLLVRK 365 DL +LS + + + D P T E L++RK Sbjct: 422 DLVLLSQAYDVRLIQPVDMMPQTPRWEGIAKLVLRK 457 >gi|124023185|ref|YP_001017492.1| SAM-dependent methyltransferase [Prochlorococcus marinus str. MIT 9303] gi|123963471|gb|ABM78227.1| SAM-dependent methyltransferase [Prochlorococcus marinus str. MIT 9303] Length = 465 Score = 66.2 bits (160), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 46/179 (25%), Positives = 81/179 (45%), Gaps = 22/179 (12%) Query: 194 INVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAA 253 I + +L+W+ I ++++ YCG G SL +A V+ +E+ ++ A N Sbjct: 304 IVLKLLKWLSTTLPDI--NIIDAYCGIGTISLPIAAAGYHVIGLELHAEAIAQANKNALR 361 Query: 254 NHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ 313 N++ N + + + + + +DPPR GLD + + Sbjct: 362 NNLGNASFLCGDVSLLLAKILQHHD---------------VLVLDPPRKGLDQMVIKTIL 406 Query: 314 AY--PHILYISCNPDSLCRDLSIL---STTHTIERLALFDQFPYTRHMECGVLLVRKPS 367 + + Y+SC+P +L RDL L + + I++L D FP T H+EC LL+R S Sbjct: 407 SVRPERVAYLSCDPATLARDLKQLIVPNGPYQIDQLQPIDFFPQTMHIECLALLIRISS 465 >gi|71906490|ref|YP_284077.1| 23S rRNA (uracil-5-)-methyltransferase [Dechloromonas aromatica RCB] gi|91207804|sp|Q47HS4|RUMA_DECAR RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|71846111|gb|AAZ45607.1| 23S rRNA m(5)U-1939 methyltransferase [Dechloromonas aromatica RCB] Length = 432 Score = 66.2 bits (160), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 51/175 (29%), Positives = 81/175 (46%), Gaps = 15/175 (8%) Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 FTQ N +N ++ L + + +++CG GNF+L +AR V+ VE + V Sbjct: 261 FTQVNHAVNRVLVRRALRLLDPQPSERIADMFCGLGNFTLPIARSGATVIGVEGSAALVR 320 Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD 305 R + AAN + + EF A E L + RF + +DPPR G Sbjct: 321 RGRESAAANGLAD-------HVEFGVANLFECTEQSLAALG----RFDKMLIDPPREGAV 369 Query: 306 DATVGMVQAYPH-ILYISCNPDSLCRDLSILST--THTIERLALFDQFPYTRHME 357 + + + P I+Y+SCNP +L RD ++L T + + FP+T H+E Sbjct: 370 ELVRAIGKDAPKRIVYVSCNPGTLARDAAVLVTEKGYRFVSAGAVNMFPHTAHVE 424 >gi|291525750|emb|CBK91337.1| 23S rRNA m(5)U-1939 methyltransferase [Eubacterium rectale DSM 17629] Length = 471 Score = 66.2 bits (160), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 63/235 (26%), Positives = 109/235 (46%), Gaps = 30/235 (12%) Query: 138 LRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVH 197 + LH + + + + T++ Y E L L ++ SF Q N+ + Sbjct: 249 FKGVLHTKNDSVADVVKNEGTEVLYGDSYFYEELL----GLKFKITPFSFFQTNS-LGAE 303 Query: 198 ML-----EWVLAATK-GIQGDLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN 250 +L E++L K + G + +LY G G + ++A V+ VEI + +V AA+ N Sbjct: 304 VLYETAREFILGDDKDSLNGKTVYDLYSGTGTIAQLMAPVCKEVVGVEIVEEAVCAAKEN 363 Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310 A N ++N K + + LK +D + I +DPPR G+ +G Sbjct: 364 AALNGLDNCKFIAG---------------DVLKVLDEIEEKPDYIILDPPRDGIHPKAIG 408 Query: 311 MVQAY--PHILYISCNPDSLCRDLSI-LSTTHTIERLALFDQFPYTRHMECGVLL 362 + Y +++YISC P SL RDL I + + +E++ D FP T H+EC +++ Sbjct: 409 KIIEYGVENMVYISCKPTSLARDLQIFMDRGYRVEKICCVDMFPNTYHVECVIMM 463 >gi|150024827|ref|YP_001295653.1| RNA methyltransferase [Flavobacterium psychrophilum JIP02/86] gi|149771368|emb|CAL42837.1| Probable RNA methyltransferase [Flavobacterium psychrophilum JIP02/86] Length = 471 Score = 66.2 bits (160), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 56/224 (25%), Positives = 100/224 (44%), Gaps = 28/224 (12%) Query: 153 GRANKT------KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAAT 206 G+ N T K+ RDY+ E + L + SF Q N+ + L + Sbjct: 264 GKPNDTIYDQDIKLFKGRDYILEEM----EGLHFSINAKSFYQTNSE-QAYELYKITRDF 318 Query: 207 KGIQGDLL--ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRM 264 G+ G+ L +LY G G + +++ +V+ VE ++ A+ N N+++N + Sbjct: 319 AGLTGNELVYDLYTGTGTIAQFVSKQAKKVIGVEAVPEAIADAKENAKRNNISNCEF--- 375 Query: 265 SSKEFTQAMRREREFNRLKDIDIHSYRFKTIFV-DPPRSGLDDATVGMVQAY--PHILYI 321 F M+ N D I + + + DPPR G+ V + + ++Y+ Sbjct: 376 ----FVGDMK-----NVFNDAFIAQHGHPDVIITDPPRDGMHADVVKQILSIGAEKVVYV 426 Query: 322 SCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 SCN + RDL+++ + + R+ D FP T H+E VLL ++ Sbjct: 427 SCNSATQARDLALMDEMYQVTRVRPVDMFPQTHHVENVVLLEKR 470 >gi|325912172|ref|ZP_08174570.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners UPII 143-D] gi|325476122|gb|EGC79290.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners UPII 143-D] Length = 457 Score = 66.2 bits (160), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 41/156 (26%), Positives = 74/156 (47%), Gaps = 15/156 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L++ Y G G ++ + +V+ +E ++ A++N N+V N + + S ++ Sbjct: 314 LVDAYAGVGTLGILASEKVKQVIGIESIPEAIADAQFNCRLNNVKNAEYINGSVEKILPQ 373 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330 M+++ + VDPPR+GL+ V ++ P +YISCNP +L R Sbjct: 374 MQKD------------GIAIDALIVDPPRTGLNKQLVKTLLTCKPKDFVYISCNPSTLAR 421 Query: 331 DLSILSTTHTIERLALFDQFPYTRHME-CGVLLVRK 365 DL +LS + + + D P T E L++RK Sbjct: 422 DLVLLSQAYDVRLIQPVDMMPQTPRWEGIAKLVLRK 457 >gi|225024584|ref|ZP_03713776.1| hypothetical protein EIKCOROL_01461 [Eikenella corrodens ATCC 23834] gi|224942735|gb|EEG23944.1| hypothetical protein EIKCOROL_01461 [Eikenella corrodens ATCC 23834] Length = 430 Score = 66.2 bits (160), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 56/189 (29%), Positives = 87/189 (46%), Gaps = 25/189 (13%) Query: 177 TLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVL 235 TL YR FTQ N N+ ++ + + G+ + +L+CG GNFSL +A +V+ Sbjct: 251 TLPYR--PGDFTQVNPTANILLVARAIQLLQPQPGERIADLFCGLGNFSLPIAAAGAQVI 308 Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295 +E + E A N NH+ + + S + Q + Y F I Sbjct: 309 GIEGSPELTERASQNARLNHL--AERAQFHSADLFQTTEH--------TVAGWGY-FDKI 357 Query: 296 FVDPPRSGLDDATVGMVQAY--PH----ILYISCNPDSLCRDLSIL-STTHTIERLALFD 348 +DPPRSG +VQA P+ I+Y+SCNP + RD ++L S + + + Sbjct: 358 LLDPPRSG----AYALVQALHAPYLPRRIVYVSCNPATFARDAAVLVSKGYRFRNAGIVN 413 Query: 349 QFPYTRHME 357 FP T H+E Sbjct: 414 MFPQTAHVE 422 >gi|156098873|ref|XP_001615452.1| hypothetical protein [Plasmodium vivax SaI-1] gi|148804326|gb|EDL45725.1| hypothetical protein, conserved [Plasmodium vivax] Length = 836 Score = 66.2 bits (160), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 44/165 (26%), Positives = 76/165 (46%), Gaps = 19/165 (11%) Query: 210 QGDLLELYCGNGNFSLVLARHFD----RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265 Q + +L CG G S+ A ++ ++I + S+ A N N + N K Sbjct: 680 QNYIFDLCCGTGTISICAANELKGEDVHIVGIDICEDSIMCANKNAEMNKIKNYK----- 734 Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV---QAYPHILYIS 322 F Q E N +K++ + + VDPPR GL ++ + ++ Q I+Y+S Sbjct: 735 ---FLQGRVEELFSNEIKNVSEKNANV-IVIVDPPRCGLANSVLNILSSNQLIGQIIYVS 790 Query: 323 CNPDSLCRDLS---ILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 CNP +L +++ + I+ L D FP+T H+EC +V+ Sbjct: 791 CNPITLISNVTHVLFQNENLKIKNLVFVDMFPHTFHLECITNMVK 835 >gi|300742321|ref|ZP_07072342.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Rothia dentocariosa M567] gi|300381506|gb|EFJ78068.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Rothia dentocariosa M567] Length = 376 Score = 66.2 bits (160), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 53/184 (28%), Positives = 78/184 (42%), Gaps = 20/184 (10%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHF-DRVLAVEIAKP 242 SF Q N I M E +Q L +LYCG G F+L A+ V +EI+ Sbjct: 208 QSFFQTNTQIAQAMYEQGREWVSQVQPRTLWDLYCGVGGFALHAAQVMHGEVTGIEISVE 267 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302 ++ +A+ +A + VK + EF R E + V+PPR Sbjct: 268 AIRSAQRTVAEQGLKGVKFAAGDATEFAVNARETPEM---------------LVVNPPRR 312 Query: 303 GLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360 G+ + V+ H++Y SCN +L DL+ + + I L D FP+T H E Sbjct: 313 GIGERLCAWVEGSGIEHVIYSSCNAKTLAADLARMPSYRPIAARVL-DMFPHTNHYEVMT 371 Query: 361 LLVR 364 LL R Sbjct: 372 LLKR 375 >gi|226306318|ref|YP_002766278.1| RNA methyltransferase [Rhodococcus erythropolis PR4] gi|226185435|dbj|BAH33539.1| putative RNA methyltransferase [Rhodococcus erythropolis PR4] Length = 422 Score = 66.2 bits (160), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 67/222 (30%), Positives = 93/222 (41%), Gaps = 34/222 (15%) Query: 153 GRANKTKICLDRDYVDER-------LTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA 205 G KT++ + D V ER L G +R N+++Q + EW AA Sbjct: 225 GGPRKTRVAIGSDTVIERVGNREWALAATGFWQAHRGAANAYSQV-------VGEWAGAA 277 Query: 206 TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265 T DL Y G G F+ VLA VE + S A AA ++++ VR Sbjct: 278 TADTAWDL---YGGVGVFASVLADLVGPSGVVESVESSARAVADGRAA--LSDLGQVRFH 332 Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISC 323 S R N + D++ + +DPPR+G V + A I++I C Sbjct: 333 SA---------RVENVIADLERSP---AVVVLDPPRAGAGRPVVEALAATGAERIVHIGC 380 Query: 324 NPDSLCRDLSI-LSTTHTIERLALFDQFPYTRHMECGVLLVR 364 +P S RD+ + L I L FD FP T HMEC LL R Sbjct: 381 DPASFGRDIGLYLEQGFRIGGLRAFDAFPQTHHMECIALLER 422 >gi|227529794|ref|ZP_03959843.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus vaginalis ATCC 49540] gi|227350278|gb|EEJ40569.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus vaginalis ATCC 49540] Length = 464 Score = 66.2 bits (160), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 58/206 (28%), Positives = 89/206 (43%), Gaps = 20/206 (9%) Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGN 222 ++Y+ E L L +R SF Q N + E A + GD L++ Y G G Sbjct: 275 QEYITESLM----GLDFRLSARSFLQLNPEQTETLYEEAAKALELSPGDTLIDAYAGIGT 330 Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282 L LA V +E +V A+ N N + N S+++ R+E Sbjct: 331 IGLSLANRVKEVWGMETIPEAVADAKQNANLNGITNAHYEVGSAEDVIPQWRKE------ 384 Query: 283 KDIDIHSYRFKTIFVDPPRSGLD-DATVGMVQAYP-HILYISCNPDSLCRDLSILSTTHT 340 + F + VDPPR+GLD D +++ P Y+SCN SL R+L L++ + Sbjct: 385 ------GHHFDALVVDPPRTGLDNDLIEQIIKERPAKFAYVSCNMASLARNLGRLTSVYH 438 Query: 341 IERLALFDQFPYTRHMECGV-LLVRK 365 ++ + D P T E V L +RK Sbjct: 439 VDYIQPVDMMPQTTRCEAVVKLSIRK 464 >gi|58581482|ref|YP_200498.1| 23S rRNA 5-methyluridine methyltransferase [Xanthomonas oryzae pv. oryzae KACC10331] gi|58426076|gb|AAW75113.1| RNA methyltransferase [Xanthomonas oryzae pv. oryzae KACC10331] Length = 479 Score = 66.2 bits (160), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 58/192 (30%), Positives = 90/192 (46%), Gaps = 18/192 (9%) Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLA 236 L +R ++ F Q NA +N M+ LA D +L+L+CG GNF+L LAR V+ Sbjct: 302 LAFRPLD--FIQVNASLNQKMIVHALALLDAKPDDRVLDLFCGLGNFTLPLARVVREVVG 359 Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296 VE V A+ N N ++N + + + TQ R + F + Sbjct: 360 VEGDAGLVARAKDNAQRNGLDNAQFY---AADLTQDQRNAAWMRQ---------GFDKLL 407 Query: 297 VDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDLSILSTTH--TIERLALFDQFPYT 353 +DPPRSG + + ++ + I+Y+SC+P SL RD L T+ D FP+T Sbjct: 408 LDPPRSGALEVLQQLPLKTFERIVYVSCHPGSLARDAGYLVNEQGFTLVSAGAMDMFPHT 467 Query: 354 RHMECGVLLVRK 365 H+E + R+ Sbjct: 468 AHVESIAVFERR 479 >gi|296449152|ref|ZP_06890939.1| 23S rRNA (uracil-5-)-methyltransferase [Clostridium difficile NAP08] gi|296880869|ref|ZP_06904817.1| 23S rRNA (uracil-5-)-methyltransferase [Clostridium difficile NAP07] gi|296261971|gb|EFH08779.1| 23S rRNA (uracil-5-)-methyltransferase [Clostridium difficile NAP08] gi|296428156|gb|EFH14055.1| 23S rRNA (uracil-5-)-methyltransferase [Clostridium difficile NAP07] Length = 453 Score = 66.2 bits (160), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 56/220 (25%), Positives = 93/220 (42%), Gaps = 31/220 (14%) Query: 154 RANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD- 212 + ++ ++ RDY+ E + L ++ SF Q N E + + + GD Sbjct: 257 QCDELRVLYGRDYIQEEIL----GLKFKISPFSFFQTNT----KGAEVLYSIARDFIGDY 308 Query: 213 ----LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268 + +LY G G+ V+A +V +EI + +V AA N N + N + + + Sbjct: 309 NDKVVFDLYSGTGSIGQVMAGAAKKVYGIEIVEEAVVAANENAKLNGLTNCEFIAGDVAK 368 Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPD 326 + ++ + + I VDPPR G+ + + + I+YISCNP Sbjct: 369 VVKDLKDKPDL---------------IIVDPPRPGIHKDAIRDICGFGAKEIVYISCNPK 413 Query: 327 SLCRDL-SILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 SL DL + I + D FP T H E V LVR+ Sbjct: 414 SLVVDLVDFKRYGYEIRMVKCMDMFPNTPHCETIVKLVRE 453 >gi|261326189|emb|CBH09015.1| hypothetical protein, conserved [Trypanosoma brucei gambiense DAL972] Length = 559 Score = 66.2 bits (160), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 58/201 (28%), Positives = 89/201 (44%), Gaps = 31/201 (15%) Query: 185 NSFTQPN-AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 SF Q N AG+ + + E V A + LL+L CG G + LA+H RV+ +E+ + + Sbjct: 371 TSFFQVNTAGMELLLRETVAVAELTPETTLLDLCCGTGTIGIALAKHVKRVIGIELVESA 430 Query: 244 VEAARYNIAANHVNNV-----KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298 V AR N N V N ++ + +Q +R +DI +D Sbjct: 431 VRDARLNAERNGVRNATFNCGRVEHLLPSVISQLSPEDR-------MDI------VAILD 477 Query: 299 PPRSGLDDATVGMVQAYPHI---LYISCNPDSLCRDLSILSTTHT-------IERLALF- 347 PPR+G+ + ++ I +YISC +L RD L+ T +A F Sbjct: 478 PPRAGVTPTVLKWIRGTATIRRLVYISCEQKALQRDCPPLTKPATKAYRESPFNVVAGFA 537 Query: 348 -DQFPYTRHMECGVLLVRKPS 367 D FP+T H+E +L R S Sbjct: 538 IDMFPHTPHVEMVAVLSRSNS 558 >gi|85858975|ref|YP_461177.1| SAM-dependent methyltransferase related to tRNA (uracil-5-)-methyltransferase [Syntrophus aciditrophicus SB] gi|85722066|gb|ABC77009.1| SAM-dependent methyltransferase related to tRNA (uracil-5-)-methyltransferase [Syntrophus aciditrophicus SB] Length = 429 Score = 66.2 bits (160), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 67/268 (25%), Positives = 116/268 (43%), Gaps = 28/268 (10%) Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC---LDRDYVDER 170 +D IV + ++D++ LR L+A + G+ + I + VD Sbjct: 171 ADSRIVPVSRCAIVDESVNRSLTALRGKLNAISAAGRRGGKKEERVILWSDTGKAAVDPG 230 Query: 171 LTVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGN 220 ++ L+ R ++ F Q N+ + M++ V+ A + G +L+ YCG+ Sbjct: 231 VSGGRGGLVMRPVKEKMLRAPFQGFFQANSALVGSMVDSVIRAC-ALTGKETVLDAYCGS 289 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G FSL LA ++ V+ +V A N++ ++N + E R Sbjct: 290 GLFSLFLASSARQLFGVDADGEAVHCAAENLSKEGISNAEFFAGDVGEIL----RHTFLK 345 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTT 338 + +DI + +DPPR G + +++ I+YISCNP + RD+ L + Sbjct: 346 TQQSVDI-------VVLDPPRIGCSSDVLEALKSLGPARIIYISCNPATQARDVRRLRDS 398 Query: 339 HTIER-LALFDQFPYTRHMECGVLLVRK 365 I R L D FP T+H+E LL R+ Sbjct: 399 GYILRDLQPIDMFPQTKHIEIVGLLERE 426 >gi|68536156|ref|YP_250861.1| putative SAM-dependent methyltransferase [Corynebacterium jeikeium K411] gi|68263755|emb|CAI37243.1| putative SAM-dependent methyltransferase [Corynebacterium jeikeium K411] Length = 446 Score = 66.2 bits (160), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 40/146 (27%), Positives = 72/146 (49%), Gaps = 16/146 (10%) Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274 +LY G G FS VL+R +RV+ V++A + ++ +AA ++NV+ V + Sbjct: 299 DLYGGAGVFSAVLSRKAERVVCVDVAGSASKSGVKAMAAAGIDNVEFVDGDVAGQVPQLP 358 Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCRDL 332 R + + +DPPR+G TV + +A P H++++ C+P + RDL Sbjct: 359 RGGSLH-------------AVVLDPPRTGAGTQTVADIAKARPRHVVHVGCDPATAARDL 405 Query: 333 SI-LSTTHTIERLALFDQFPYTRHME 357 + + + I+ L + D F H+E Sbjct: 406 AAWIDNGYAIKELCVVDAFGLNHHVE 431 >gi|161723317|ref|NP_245007.2| 23S rRNA methyluridine methyltransferase [Pasteurella multocida subsp. multocida str. Pm70] gi|20455417|sp|Q9CPH1|RUMB_PASMU RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName: Full=23S rRNA(M-5-U747)-methyltransferase Length = 387 Score = 66.2 bits (160), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 49/163 (30%), Positives = 81/163 (49%), Gaps = 21/163 (12%) Query: 213 LLELYCGNGNFSLVLARHF-----DRVL---AVEIAKPSVEAARYNIAANHVNNVKIVRM 264 L +L+CG G F L A+ DR++ +EI+ ++EAA + + VK + Sbjct: 236 LWDLFCGVGGFGLHCAQALQTQYPDRIIQLTGIEISASAIEAATLSAQKLGLKQVKFQSL 295 Query: 265 SSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD-DATVGMVQAYPH-ILYIS 322 +K F A + + + + V+PPR G+ + + Q PH ILY S Sbjct: 296 DAKHFALAQSPAAQDDTPE----------LVIVNPPRRGIGIELAQFLNQLAPHFILYSS 345 Query: 323 CNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 CN +++ +D+ LS + ++++ LFD FP+T H E LL RK Sbjct: 346 CNAETMGKDVLHLSD-YQLKKVQLFDMFPHTSHYEVLCLLERK 387 >gi|295689033|ref|YP_003592726.1| (uracil-5)-methyltransferase [Caulobacter segnis ATCC 21756] gi|295430936|gb|ADG10108.1| (Uracil-5)-methyltransferase [Caulobacter segnis ATCC 21756] Length = 416 Score = 66.2 bits (160), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 49/203 (24%), Positives = 94/203 (46%), Gaps = 29/203 (14%) Query: 170 RLTVAGRTL-------------IYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLEL 216 R+T+AG T+ + +F Q M+++ +A +G L +L Sbjct: 221 RVTLAGETVYGARQPLVKLGQAVVALPPGAFLQAVPAAERAMVDFTVAEAQGAS-RLADL 279 Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276 YCG G F+ LA V A E++ P++EA A + +K + +++ +RR Sbjct: 280 YCGVGTFTFRLA-EIGAVHAAEMSAPAIEA--LKTAMGSTSGLKPIHAEARDL---VRRP 333 Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA-YPHILYISCNPDSLCRDL-SI 334 L D+ + +DPPR+G + TV + ++ ++ +SCNP + +D ++ Sbjct: 334 VLSTELAKTDV-------VVIDPPRAGAAEQTVEIAKSKVAKVISVSCNPGTFAKDARAL 386 Query: 335 LSTTHTIERLALFDQFPYTRHME 357 + +E++ DQF ++ H+E Sbjct: 387 VEAGFRLEKVLPVDQFVWSPHIE 409 >gi|258545955|ref|ZP_05706189.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Cardiobacterium hominis ATCC 15826] gi|258518833|gb|EEV87692.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Cardiobacterium hominis ATCC 15826] Length = 430 Score = 66.2 bits (160), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 92/349 (26%), Positives = 138/349 (39%), Gaps = 45/349 (12%) Query: 33 LQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMA 92 L EP HYR RA W D + F + R+ + L + A + + Sbjct: 111 LPAISGEPWHYRSRARL-AWDDAQQ--ALGFRGRASSRV---VNLERCLTLPAAISARLP 164 Query: 93 TIRLEPLLRAKLFQIDYL----TSQSDQAIVTLI-YHRLLDDAWRECAIRLRDALHARKY 147 IR L A+L Q L S+ D V I + + D + + A+ + Sbjct: 165 DIRA---LCARLAQQTTLHGVDISEGDSVTVLRIRLQKAVGDRLAAETVARWNESAAQPW 221 Query: 148 QIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATK 207 QI L K D + L T+ Y + FTQ N +N ++ LAA + Sbjct: 222 QIWLQNGRETRKHPADAPALAYTLPAYDLTMPY--APDDFTQVNKALNRELVTQALAALQ 279 Query: 208 GIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266 G +L+ +CG GNF+L LAR VL +E VE +VR ++ Sbjct: 280 VPPGARVLDFFCGLGNFTLPLARSGADVLGLE----GVEE-------------MVVRATA 322 Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKT------IFVDPPRSG---LDDATVGMVQAYPH 317 + +F R + + + K +DPPR+G L +A G A Sbjct: 323 NAAAHGLAARCQFRRADLFTVTAKQLKAWGKAERWLLDPPRAGAQALCEALDGK-HAPAR 381 Query: 318 ILYISCNPDSLCRDLSILS-TTHTIERLALFDQFPYTRHMECGVLLVRK 365 I+Y+SCNP +L RD IL+ + + L F T H+E + VRK Sbjct: 382 IVYVSCNPGTLARDAGILAQKGYRMASGRLLHMFAQTAHVESLAVFVRK 430 >gi|94987018|ref|YP_594951.1| RNA methyltransferase [Lawsonia intracellularis PHE/MN1-00] gi|94731267|emb|CAJ54630.1| similar to RNA methyltransferase [Lawsonia intracellularis PHE/MN1-00] Length = 470 Score = 66.2 bits (160), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 43/145 (29%), Positives = 71/145 (48%), Gaps = 14/145 (9%) Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274 +LY G G+ +L LA +V+ VE S+ A N + N ++ + F +R Sbjct: 326 DLYTGVGSIALFLAPFSLKVIGVESIAASINLANKNRLSLGYTNCSFIQDDAFSF---IR 382 Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDL 332 + + DI + VDPPR+GLD + ++ A +Y+SCNP + RD+ Sbjct: 383 SQIQKGITPDI---------VIVDPPRAGLDKKVIELLIRLAPRRCIYVSCNPGTFARDI 433 Query: 333 SILSTTHTIERLALFDQFPYTRHME 357 ++LS I++ D FP+T H+E Sbjct: 434 AMLSPHFVIQQTQPVDLFPHTPHVE 458 >gi|260578853|ref|ZP_05846759.1| SAM-dependent methyltransferase [Corynebacterium jeikeium ATCC 43734] gi|258603000|gb|EEW16271.1| SAM-dependent methyltransferase [Corynebacterium jeikeium ATCC 43734] Length = 455 Score = 65.9 bits (159), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 40/146 (27%), Positives = 72/146 (49%), Gaps = 16/146 (10%) Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274 +LY G G FS VL+R +RV+ V++A + ++ +AA ++NV+ V + Sbjct: 308 DLYGGAGVFSAVLSRKAERVVCVDVAGSASKSGVKAMAAAGIDNVEFVDGDVAGQVPQLP 367 Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCRDL 332 R + + +DPPR+G TV + +A P H++++ C+P + RDL Sbjct: 368 RGGSLH-------------AVVLDPPRTGAGTQTVADIAKARPRHVVHVGCDPATAARDL 414 Query: 333 SI-LSTTHTIERLALFDQFPYTRHME 357 + + + I+ L + D F H+E Sbjct: 415 AAWIDNGYAIKELCVVDAFGLNHHVE 440 >gi|255654431|ref|ZP_05399840.1| putative tRNA (Uracil-5-)-methyltransferase [Clostridium difficile QCD-23m63] Length = 451 Score = 65.9 bits (159), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 56/220 (25%), Positives = 93/220 (42%), Gaps = 31/220 (14%) Query: 154 RANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD- 212 + ++ ++ RDY+ E + L ++ SF Q N E + + + GD Sbjct: 255 QCDELRVLYGRDYIQEEIL----GLKFKISPFSFFQTNT----KGAEVLYSIARDFIGDY 306 Query: 213 ----LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268 + +LY G G+ V+A +V +EI + +V AA N N + N + + + Sbjct: 307 NDKVVFDLYSGTGSIGQVMAGAAKKVYGIEIVEEAVVAANENAKLNGLTNCEFIAGDVAK 366 Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPD 326 + ++ + + I VDPPR G+ + + + I+YISCNP Sbjct: 367 VVKDLKDKPDL---------------IIVDPPRPGIHKDAIRDICGFGAKEIVYISCNPK 411 Query: 327 SLCRDL-SILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 SL DL + I + D FP T H E V LVR+ Sbjct: 412 SLVVDLVDFKRYGYEIRMVKCMDMFPNTPHCETIVKLVRE 451 >gi|170770019|ref|ZP_02904472.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia albertii TW07627] gi|170121085|gb|EDS90016.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia albertii TW07627] Length = 147 Score = 65.9 bits (159), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 44/153 (28%), Positives = 71/153 (46%), Gaps = 18/153 (11%) Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274 +L+CG G F L A ++ +EIA ++ A+ + A + ++ + S +F A Sbjct: 3 DLFCGVGGFGLHCATPDMQLTGIEIAPEAIACAKQSAAELGLTRLQFQALDSTQFATAQG 62 Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDL 332 E + V+PPR G+ + A I+Y SCN ++ +D+ Sbjct: 63 EVPEL---------------VLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMTKDI 107 Query: 333 SILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 L H IER+ LFD FP+T H E LLV++ Sbjct: 108 RELPGYH-IERVQLFDMFPHTAHYEVLALLVKQ 139 >gi|91207815|sp|Q3BVV1|RUMA_XANC5 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase Length = 444 Score = 65.9 bits (159), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 57/192 (29%), Positives = 91/192 (47%), Gaps = 18/192 (9%) Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLA 236 L +R ++ F Q NA +N M+ +A + D +L+L+CG GNF+L LAR V+ Sbjct: 267 LAFRPLD--FIQVNASLNQKMIAHAVALLEAKPDDRVLDLFCGLGNFTLPLARVVREVVG 324 Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296 VE V A+ N N ++N + + + TQ R + F + Sbjct: 325 VEGDAGLVARAKENAQRNGLDNAQ---FHAADLTQDQRSAPWMRQ---------GFDKLL 372 Query: 297 VDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDLSILSTTH--TIERLALFDQFPYT 353 +DPPRSG + + ++ + I+Y+SC+P SL RD L T+ D FP+T Sbjct: 373 LDPPRSGALEVLQQLPLKTFDRIVYVSCHPGSLARDAGYLVNDQGFTLVCAGAMDMFPHT 432 Query: 354 RHMECGVLLVRK 365 H+E + R+ Sbjct: 433 AHVESIAVFERR 444 >gi|227329295|ref|ZP_03833319.1| 23S rRNA methyluridine methyltransferase [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 375 Score = 65.9 bits (159), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 44/155 (28%), Positives = 73/155 (47%), Gaps = 18/155 (11%) Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271 + +L+CG G F L A R+ +EI+ ++ AR + + V+ + S +F Sbjct: 236 SMWDLFCGVGGFGLHCASPEMRLTGIEISAEAIACARRSAEQLGLKQVEFQALDSTQFAT 295 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLC 329 A + D+ + V+PPR G+ + A +ILY SCN +S+ Sbjct: 296 AK------AEIPDL---------VLVNPPRRGIGSELCAYLSRMAPDYILYSSCNAESMA 340 Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 +D++ L+ + R+ LFD FP+T H E LL R Sbjct: 341 KDMTELANYRAL-RVQLFDMFPHTAHYEVLTLLKR 374 >gi|298346672|ref|YP_003719359.1| 23S rRNA methyluridine methyltransferase [Mobiluncus curtisii ATCC 43063] gi|298236733|gb|ADI67865.1| 23S rRNA methyluridine methyltransferase [Mobiluncus curtisii ATCC 43063] Length = 342 Score = 65.9 bits (159), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 43/162 (26%), Positives = 72/162 (44%), Gaps = 13/162 (8%) Query: 215 ELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIA--ANHVNNVKIVRMSSKEFTQ 271 +LYCG G F+ L+ +V VE+ P+++ A++ + A+ V + + + T Sbjct: 180 DLYCGVGGFAFALSSAGVAQVTGVEVVGPAIDGAKHAVTELASATATVPVEPSNKNDGTP 239 Query: 272 AMRREREFNRLKDIDIHSYRFKT-------IFVDPPRSGLDDATVGMVQ--AYPHILYIS 322 D + + V+PPR GL ++ PH++Y S Sbjct: 240 NTPSAAPRPHFITADATKWAVNQTLMPPDLVVVNPPRRGLGPDLSSWLERSGIPHLIYSS 299 Query: 323 CNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 C P +L DL + ++ I L D FP+T H+EC VL+ R Sbjct: 300 CFPGTLVEDLRRMR-SYQIRAAKLVDMFPHTSHVECVVLMSR 340 >gi|268590215|ref|ZP_06124436.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Providencia rettgeri DSM 1131] gi|291314496|gb|EFE54949.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Providencia rettgeri DSM 1131] Length = 377 Score = 65.9 bits (159), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 53/186 (28%), Positives = 85/186 (45%), Gaps = 25/186 (13%) Query: 185 NSFTQPNAGINVHML----EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240 SF Q N + + EWV A L +L+CG G F L A + +EI+ Sbjct: 208 QSFFQTNPVVAAKLYQTAREWVKALDIH---SLWDLFCGVGGFGLHCAEKDTHLTGIEIS 264 Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300 P++ +A+ + + +V+ + S F A + DI + I V+PP Sbjct: 265 APAIASAQQSADELGLKHVEFKALDSTRFATANQ---------DIP------QLILVNPP 309 Query: 301 RSGLDDATVGMVQ-AYP-HILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMEC 358 R G+ + P +ILY SCN ++ +DL +L+ + + ++ LFD FP+T H E Sbjct: 310 RRGIGKELCDFLSHVQPEYILYSSCNAQTMAQDLQLLA-GYQVCKVQLFDLFPHTAHFEV 368 Query: 359 GVLLVR 364 LL R Sbjct: 369 LTLLKR 374 >gi|126324739|ref|XP_001376871.1| PREDICTED: similar to HpaII tiny fragments locus 9C [Monodelphis domestica] Length = 663 Score = 65.9 bits (159), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 46/164 (28%), Positives = 75/164 (45%), Gaps = 23/164 (14%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +L++ CG G L LA+ RV+ +E+ + +VE AR N N ++N++ +++ + Sbjct: 447 VLDVCCGTGTIGLSLAQTVKRVIGIELCQEAVEDARVNAKMNALDNIEFHCGKAEDLVPS 506 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH---ILYISCNPDS-- 327 + RL T VDPPR+GL + ++ H ++Y+SCNP + Sbjct: 507 LMSSLASQRL-----------TAIVDPPRAGLHSKVILAIRRAEHLKKLIYVSCNPRAAM 555 Query: 328 -----LCRDLS--ILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 LCR S + + R D FP T H E +L R Sbjct: 556 SNFVDLCRAPSNRVKGSPFRPVRAVAVDLFPQTLHCEMLILFER 599 >gi|260219678|emb|CBA26523.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Curvibacter putative symbiont of Hydra magnipapillata] Length = 489 Score = 65.9 bits (159), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 78/298 (26%), Positives = 121/298 (40%), Gaps = 36/298 (12%) Query: 87 MIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARK 146 +IE M + P L +L D TSQ QA V + R ++ RLR A A + Sbjct: 192 LIESMDAVETIPQL--ELAMGDMGTSQDSQAGVIALVMRHMEPLSEADKGRLR-AFAATQ 248 Query: 147 YQIQ--LIGRANKTKICLDRDYVDERLTVA------GRTLIYRQIENSFTQPNAGINVHM 198 +Q L + +T LD E +A G T+ +R + FTQ N IN + Sbjct: 249 PGLQWWLQPKGPETIHRLDELPGHETGDLAYTLPDYGITMPFRPTD--FTQVNPHINRVL 306 Query: 199 LEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVN 257 + L + + + +++ +CG GNF+L LA VL VE A+ V +R N+ N Sbjct: 307 VSRALGLLQVQKTERVIDWFCGLGNFTLPLATQAREVLGVEGAESLVARSRENLTFNSTQ 366 Query: 258 NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP- 316 + + F ++ I +DPPR G +VQA Sbjct: 367 KKALAPDAPALAATKFVARNLFEMTPELLIADGTADKWLIDPPREG----AYALVQALAA 422 Query: 317 ---------------HILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTRHME 357 I+Y+SC P +L RD +L +T + + + FP+T H+E Sbjct: 423 LHQQPELRKGWTPPRRIVYVSCAPSTLARDAGVLVNEAGYTCTKAGVVNMFPHTAHVE 480 >gi|229916717|ref|YP_002885363.1| RNA methyltransferase, TrmA family [Exiguobacterium sp. AT1b] gi|229468146|gb|ACQ69918.1| RNA methyltransferase, TrmA family [Exiguobacterium sp. AT1b] Length = 454 Score = 65.9 bits (159), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 42/148 (28%), Positives = 72/148 (48%), Gaps = 15/148 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G SL LAR V VE+ ++E A+ N N ++NV ++++ Sbjct: 309 VVDAYCGIGTISLFLARKAAHVYGVEVVPEAIEDAKQNALVNEIDNVTYACGAAEDVLPQ 368 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330 +++ I VDPPR G ++ + MV+ P I+Y+SCN + R Sbjct: 369 WKKD------------GVNPDVIVVDPPRKGCAESFLETMVEMGPKRIVYVSCNVATQAR 416 Query: 331 DLSILST-THTIERLALFDQFPYTRHME 357 D+ L+ + + + D FP+T H+E Sbjct: 417 DMRYLADHGYRLMEVTPVDMFPHTAHVE 444 >gi|12720278|gb|AAK02154.1| unknown [Pasteurella multocida subsp. multocida str. Pm70] Length = 396 Score = 65.9 bits (159), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 49/163 (30%), Positives = 81/163 (49%), Gaps = 21/163 (12%) Query: 213 LLELYCGNGNFSLVLARHF-----DRVL---AVEIAKPSVEAARYNIAANHVNNVKIVRM 264 L +L+CG G F L A+ DR++ +EI+ ++EAA + + VK + Sbjct: 245 LWDLFCGVGGFGLHCAQALQTQYPDRIIQLTGIEISASAIEAATLSAQKLGLKQVKFQSL 304 Query: 265 SSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD-DATVGMVQAYPH-ILYIS 322 +K F A + + + + V+PPR G+ + + Q PH ILY S Sbjct: 305 DAKHFALAQSPAAQDDTPE----------LVIVNPPRRGIGIELAQFLNQLAPHFILYSS 354 Query: 323 CNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 CN +++ +D+ LS + ++++ LFD FP+T H E LL RK Sbjct: 355 CNAETMGKDVLHLSD-YQLKKVQLFDMFPHTSHYEVLCLLERK 396 >gi|156934644|ref|YP_001438560.1| 23S rRNA methyluridine methyltransferase [Cronobacter sakazakii ATCC BAA-894] gi|167012640|sp|A7MF48|RUMB_ENTS8 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName: Full=23S rRNA(M-5-U747)-methyltransferase gi|156532898|gb|ABU77724.1| hypothetical protein ESA_02478 [Cronobacter sakazakii ATCC BAA-894] Length = 375 Score = 65.9 bits (159), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 44/155 (28%), Positives = 72/155 (46%), Gaps = 18/155 (11%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + +L+CG G F L A + +EIA ++ +AR + A + NV + S +F Sbjct: 237 MWDLFCGVGGFGLHCATPEMTLTGIEIAPEAIASARASAQALGLRNVHFQALDSTDFATG 296 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCR 330 + + + V+PPR G+ A + A +I+Y SCN ++ + Sbjct: 297 QQAVPDL---------------VLVNPPRRGIGKALCEYLSHMAPRYIVYSSCNAQTMAK 341 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 D+ + I R+ LFD FP+T H E LLVR+ Sbjct: 342 DIGEWP-GYRIARVQLFDMFPHTAHYEVLTLLVRE 375 >gi|218248804|ref|YP_002374175.1| TrmA family RNA methyltransferase [Cyanothece sp. PCC 8801] gi|257061863|ref|YP_003139751.1| RNA methyltransferase, TrmA family [Cyanothece sp. PCC 8802] gi|218169282|gb|ACK68019.1| RNA methyltransferase, TrmA family [Cyanothece sp. PCC 8801] gi|256592029|gb|ACV02916.1| RNA methyltransferase, TrmA family [Cyanothece sp. PCC 8802] Length = 461 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 48/161 (29%), Positives = 75/161 (46%), Gaps = 26/161 (16%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G FSL LA+ +V+ +E+ S+ AR N N ++NV + + + Sbjct: 312 VIDAYCGIGTFSLPLAQRVKQVIGLEVNPNSISQARKNAQLNGIDNVSFLAGTVETLLPQ 371 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGL------DDATVGMV--QAYP-HILYISC 323 + S I +DPPR G D+ATV + P +++YISC Sbjct: 372 L---------------SCSPDIILLDPPRKGCDHQRRKDEATVTEILRNLQPSYLVYISC 416 Query: 324 NPDSLCRDLSILSTTHTIERLAL--FDQFPYTRHMECGVLL 362 P ++ RDL L + + L + D FP T H+E LL Sbjct: 417 QPPTMARDLQKLCQGNLYDLLWVQPMDFFPQTAHVESVALL 457 >gi|261339168|ref|ZP_05967026.1| hypothetical protein ENTCAN_05391 [Enterobacter cancerogenus ATCC 35316] gi|288319012|gb|EFC57950.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Enterobacter cancerogenus ATCC 35316] Length = 375 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 45/158 (28%), Positives = 72/158 (45%), Gaps = 22/158 (13%) Query: 211 GDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270 G + +L+CG G F L A ++ +EI+ ++ A + A + N+ + S +F Sbjct: 235 GHMWDLFCGVGGFGLHCATPEMQLTGIEISAEAIACATQSAAELGLTNLHFQALDSTQFA 294 Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD----DATVGMVQAYPHILYISCNPD 326 E + V+PPR G+ D M AY I+Y SCN Sbjct: 295 TGQGNVPEL---------------VLVNPPRRGIGKPLCDYLSQMAPAY--IVYSSCNAR 337 Query: 327 SLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 ++ +D++ L + IER+ LFD FP+T H E LL + Sbjct: 338 TMAKDIAHLPG-YRIERVQLFDMFPHTAHYEVLTLLAK 374 >gi|300784521|ref|YP_003764812.1| 23S rRNA methyltransferase [Amycolatopsis mediterranei U32] gi|299794035|gb|ADJ44410.1| 23S rRNA methyltransferase [Amycolatopsis mediterranei U32] Length = 395 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 50/165 (30%), Positives = 77/165 (46%), Gaps = 33/165 (20%) Query: 209 IQGDLLELYCGNGNFSLVLARHFD---RVLAVEIAKPSVEAARYNIA-----ANHVNNVK 260 + G +LY G G F+ VLA RVLA+E + +V N+A + H V+ Sbjct: 252 VGGSAWDLYAGVGLFASVLATQVGTSGRVLAIESGRRAVADGERNLADLPQVSWHAGRVE 311 Query: 261 IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HI 318 V S+ K +D+ + +DPPR G A V +V P I Sbjct: 312 HVLESAA---------------KPVDV-------VVLDPPRKGAGKAVVESIVAGAPDRI 349 Query: 319 LYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLL 362 +Y++C+P +L RD++ + +++ L FD FP T H+EC LL Sbjct: 350 VYVACDPAALARDVATFAAHGYSLTDLRAFDAFPMTHHVECVALL 394 >gi|304397037|ref|ZP_07378916.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Pantoea sp. aB] gi|304355186|gb|EFM19554.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Pantoea sp. aB] Length = 379 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 42/159 (26%), Positives = 75/159 (47%), Gaps = 18/159 (11%) Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271 + +L+CG G F L A + +EI+ +++ A+ + + V+ + S F Sbjct: 235 SMWDLFCGVGGFGLHCATPEMELTGIEISAEAIKCAQRSAEMLGLEKVQFAALDSTSFAT 294 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLC 329 + + V+PPR G+ +A + Q P ++LY SCNP ++ Sbjct: 295 GRDAVPQL---------------VLVNPPRRGIGEALCDYLSQMAPDYLLYSSCNPQTMV 339 Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRKPSG 368 +D++ LS + + ++ LFD FP+T H E LL R+ G Sbjct: 340 QDIARLSA-YEVTKVQLFDMFPHTAHFEVLTLLTRRHHG 377 >gi|237747678|ref|ZP_04578158.1| 23S rRNA 5-methyluridine methyltransferase [Oxalobacter formigenes OXCC13] gi|229379040|gb|EEO29131.1| 23S rRNA 5-methyluridine methyltransferase [Oxalobacter formigenes OXCC13] Length = 464 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 52/184 (28%), Positives = 80/184 (43%), Gaps = 22/184 (11%) Query: 185 NSFTQPNAGINVHMLEWVLAATK-GIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 N FTQ N IN ++ L G + +L+CG GNFSL +AR V+ +E + Sbjct: 283 NDFTQVNHHINQVLVSRALRLLDIGEDERIADLFCGLGNFSLPIARQAKEVVGIEGSDIL 342 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 + A N N + + S+ F + + +F I +DPPR G Sbjct: 343 TQRAEENAVLNGLEDKTKFACSNL-----------FEMTAENWVALGKFDRILIDPPRDG 391 Query: 304 LDDATVGM-------VQAYPH-ILYISCNPDSLCRDLSILST--THTIERLALFDQFPYT 353 + Q P I+Y+SCNP +L RD IL T + ++ + + FP+T Sbjct: 392 AAAVCQAIANLDEKHAQFKPKRIVYVSCNPSTLARDAGILVTEGGYKLDMAGVINMFPHT 451 Query: 354 RHME 357 H+E Sbjct: 452 SHVE 455 >gi|304389619|ref|ZP_07371581.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|304327172|gb|EFL94408.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 342 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 43/162 (26%), Positives = 72/162 (44%), Gaps = 13/162 (8%) Query: 215 ELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIA--ANHVNNVKIVRMSSKEFTQ 271 +LYCG G F+ L+ +V VE+ P+++ A++ + A+ V + + + T Sbjct: 180 DLYCGVGGFAFALSSAGVAQVTGVEVVGPAIDGAKHAVTELASATATVPVEPSNKNDGTP 239 Query: 272 AMRREREFNRLKDIDIHSYRFKT-------IFVDPPRSGLDDATVGMVQ--AYPHILYIS 322 D + + V+PPR GL ++ PH++Y S Sbjct: 240 NTPSAAPRPHFITADATKWAVNQTLMPPDLVVVNPPRRGLGPDLSSWLERSGIPHLIYSS 299 Query: 323 CNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 C P +L DL + ++ I L D FP+T H+EC VL+ R Sbjct: 300 CFPGTLVEDLRRMR-SYQIRAAKLVDMFPHTSHVECVVLMSR 340 >gi|294626959|ref|ZP_06705550.1| 23S rRNA uracil-5- -methyltransferase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292598819|gb|EFF42965.1| 23S rRNA uracil-5- -methyltransferase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 491 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 57/192 (29%), Positives = 90/192 (46%), Gaps = 18/192 (9%) Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLA 236 L +R ++ F Q NA +N M+ +A D +L+L+CG GNF+L LAR V+ Sbjct: 314 LAFRPLD--FIQVNASLNQKMIAHAVALLDAKPDDRVLDLFCGLGNFTLPLARVVREVVG 371 Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296 VE V A+ N N ++N + + + TQ R + F + Sbjct: 372 VEGDAGLVARAKENAQRNGLDNAQFY---AADLTQDQRSAPWMRQ---------GFDKLL 419 Query: 297 VDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDLSILSTTH--TIERLALFDQFPYT 353 +DPPRSG + + ++ + I+Y+SC+P SL RD L T+ D FP+T Sbjct: 420 LDPPRSGALEVLQQLPLKTFQRIVYVSCHPGSLARDAGYLVNEQGFTLVSAGAMDMFPHT 479 Query: 354 RHMECGVLLVRK 365 H+E + R+ Sbjct: 480 AHVESIAVFERR 491 >gi|37525531|ref|NP_928875.1| 23S rRNA methyluridine methyltransferase [Photorhabdus luminescens subsp. laumondii TTO1] gi|50401494|sp|Q7N6G6|RUMB_PHOLL RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName: Full=23S rRNA(M-5-U747)-methyltransferase gi|36784959|emb|CAE13877.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 377 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 45/157 (28%), Positives = 73/157 (46%), Gaps = 22/157 (14%) Query: 211 GDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270 + +L+CG G F L A + +EI+ +++ AR + + N++ + S F Sbjct: 235 SSMWDLFCGVGGFGLHCADKNTCLTGIEISSEAIDCARDSAKTLGLENIEFQALDSTHFA 294 Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG----LDDATVGMVQAYPHILYISCNPD 326 A + + + V+PPR G L D MV Y ILY SCN Sbjct: 295 VAKDQIPQL---------------VLVNPPRRGIGKVLCDYLSKMVPDY--ILYSSCNAQ 337 Query: 327 SLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363 ++ +D++ L+ + +E+ LFD FP+T H E LLV Sbjct: 338 TMAKDIAALA-NYRVEKTQLFDMFPHTEHYEVLTLLV 373 >gi|317969858|ref|ZP_07971248.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Synechococcus sp. CB0205] Length = 458 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 53/165 (32%), Positives = 73/165 (44%), Gaps = 20/165 (12%) Query: 208 GIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267 G +++ Y G G +SL LAR +VL +E+ SV A N N + ++ Sbjct: 307 GKSATVIDAYSGIGTYSLPLARSGLKVLGLEVHPLSVSQATANAERNGI--------TTA 358 Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYP-HILYISCNP 325 F QA RLK ++ VDPPR GL +G + P + YISCNP Sbjct: 359 FFEQADVAAVLAERLKMTG-------SLLVDPPRKGLRGEALGAILDGTPDRLAYISCNP 411 Query: 326 DSLCRDLSIL---STTHTIERLALFDQFPYTRHMECGVLLVRKPS 367 +L RDL L + +E + D FP T H+E LL S Sbjct: 412 STLARDLQQLCGEEGGYRLETVQPVDFFPQTSHVETLALLTHSGS 456 >gi|114561765|ref|YP_749278.1| 23S rRNA methyluridine methyltransferase [Shewanella frigidimarina NCIMB 400] gi|122300808|sp|Q087X5|RUMB_SHEFN RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName: Full=23S rRNA(M-5-U747)-methyltransferase gi|114333058|gb|ABI70440.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Shewanella frigidimarina NCIMB 400] Length = 377 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 50/184 (27%), Positives = 79/184 (42%), Gaps = 23/184 (12%) Query: 185 NSFTQPNAGINVHML----EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240 SF Q N + + EWV T+ + +L+CG G F L A R+ +EI Sbjct: 208 KSFFQTNPEVAAQLYQIAREWV---TEFKPNYIWDLFCGVGGFGLHCADSNIRLTGIEIE 264 Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300 ++E A + V + S F + + + + I V+PP Sbjct: 265 SEAIECAILSATKLGFTQVDFSALDSTHFAKGQSAQDKPD-------------LIIVNPP 311 Query: 301 RSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMEC 358 R GL + + + I+Y SCNP +L DL + T + I ++ +FD FP+T H E Sbjct: 312 RRGLGKSLCDSLSEFAPKAIVYSSCNPHTLMSDLEYI-TGYQITKVQMFDMFPHTDHFEV 370 Query: 359 GVLL 362 V+L Sbjct: 371 LVML 374 >gi|302343363|ref|YP_003807892.1| RNA methyltransferase, TrmA family [Desulfarculus baarsii DSM 2075] gi|301639976|gb|ADK85298.1| RNA methyltransferase, TrmA family [Desulfarculus baarsii DSM 2075] Length = 433 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 54/191 (28%), Positives = 89/191 (46%), Gaps = 16/191 (8%) Query: 178 LIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELYCGNGNFSLVLARHFDRVLA 236 L R F Q N G+N ++ VL AA + G+ L+L+ G GNF+L LA+ +V A Sbjct: 254 LQLRAYPGLFCQVNLGLNQRLMGLVLEAAGQLPPGEALDLFAGGGNFALPLAQAGWQVCA 313 Query: 237 VEIAKPSVEAARYNIAANHVNN-VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295 VE + + + ++ ++I+ +TQA + + + RF + Sbjct: 314 VEAQPQAAQVMLWQARRAELDERLEIL------WTQAA------DAVGRLTSSGRRFDLV 361 Query: 296 FVDPPRSGLDDATVGMVQAYPH-ILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYT 353 +DPPR+G + P + Y+SC+P +L RD +L + L D FP T Sbjct: 362 VLDPPRAGAKGLMDQVAALAPKRVAYVSCHPAALARDAKELLGYGYAPVALHALDMFPQT 421 Query: 354 RHMECGVLLVR 364 H+E ++L R Sbjct: 422 SHVEALLILDR 432 >gi|294664539|ref|ZP_06729884.1| 23S rRNA uracil-5- -methyltransferase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292605701|gb|EFF49007.1| 23S rRNA uracil-5- -methyltransferase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 491 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 57/192 (29%), Positives = 90/192 (46%), Gaps = 18/192 (9%) Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLA 236 L +R ++ F Q NA +N M+ +A D +L+L+CG GNF+L LAR V+ Sbjct: 314 LAFRPLD--FIQVNASLNQKMIAHAVALLDAKPDDRVLDLFCGLGNFTLPLARVVREVVG 371 Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296 VE V A+ N N ++N + + + TQ R + F + Sbjct: 372 VEGDAGLVARAKENAQRNGLDNAQFY---AADLTQDQRSAPWMRQ---------GFDKLL 419 Query: 297 VDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDLSILSTTH--TIERLALFDQFPYT 353 +DPPRSG + + ++ + I+Y+SC+P SL RD L T+ D FP+T Sbjct: 420 LDPPRSGALEVLQQLPLKTFQRIVYVSCHPGSLARDAGYLVNEQGFTLVSAGAMDMFPHT 479 Query: 354 RHMECGVLLVRK 365 H+E + R+ Sbjct: 480 AHVESIAVFERR 491 >gi|306812692|ref|ZP_07446885.1| 23S rRNA methyluridine methyltransferase [Escherichia coli NC101] gi|305853455|gb|EFM53894.1| 23S rRNA methyluridine methyltransferase [Escherichia coli NC101] Length = 375 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 43/155 (27%), Positives = 73/155 (47%), Gaps = 18/155 (11%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + +L+CG G F L A ++ +EIA ++ A+ + A + ++ + S +F A Sbjct: 237 MWDLFCGVGGFGLHCATPDMQLTGIEIAPEAIACAKQSAAELGLTRLQFQALDSTQFATA 296 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCR 330 E + V+PPR G+ + A I+Y SCN ++ + Sbjct: 297 QGEVPEL---------------VLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAK 341 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 D+ L + IER+ LFD FP+T H E +LLV++ Sbjct: 342 DIRELPG-YRIERVQLFDMFPHTAHYEVLILLVKQ 375 >gi|254475692|ref|ZP_05089078.1| putative RNA methyltransferase [Ruegeria sp. R11] gi|214029935|gb|EEB70770.1| putative RNA methyltransferase [Ruegeria sp. R11] Length = 435 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 44/149 (29%), Positives = 77/149 (51%), Gaps = 15/149 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++L+ G G FSL LAR+ + V AVE +P + A ++ +K V +++ + Sbjct: 289 VVDLFAGCGTFSLPLARNAE-VHAVEGERPMLAA--LDLGWRQAKGLKKVTTETRDLFR- 344 Query: 273 MRREREFNRLKDIDIHSY--RFKTIFVDPPRSGLDDATVGMVQA-YPHILYISCNPDSLC 329 N L +D++ + + +DPPR+G + +V +V A P I Y+SCNP + Sbjct: 345 -------NPLLPVDLNPFGEEYDAAVIDPPRAGAEAQSVQLVAAKTPSIAYVSCNPVTFA 397 Query: 330 RDLSIL-STTHTIERLALFDQFPYTRHME 357 RD IL + + + + DQF ++ H E Sbjct: 398 RDAKILVDGGYQLNWVQVVDQFRWSSHTE 426 >gi|297566568|ref|YP_003685540.1| (Uracil-5)-methyltransferase [Meiothermus silvanus DSM 9946] gi|296851017|gb|ADH64032.1| (Uracil-5)-methyltransferase [Meiothermus silvanus DSM 9946] Length = 398 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 56/159 (35%), Positives = 78/159 (49%), Gaps = 30/159 (18%) Query: 214 LELYCGNGNFSLVLARHFDRVLAVEIAKPSV---EAARYNIAANHVNNVKIVRMSSKEFT 270 +ELY G+G L LA F V+A+EI K +V EA R + +H ++ R S Sbjct: 262 VELYAGSGVLGLHLAERFCEVIAIEINKDAVRRGEADRERLGVSH---LRFHRGDS---- 314 Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSL 328 RE D+ + VDPPRSGL + +VQA P +LY+SC+P + Sbjct: 315 ------RELYTFTPADL-------VAVDPPRSGLSAEVMQAIVQARPKRVLYLSCDPATW 361 Query: 329 CRDLSILSTTHTIERLAL---FDQFPYTRHMECGVLLVR 364 RD+ L T RLA +D +P+T H+E LL R Sbjct: 362 ARDVRGL--TQAGYRLAFARPYDFYPFTHHVEVLSLLER 398 >gi|315641196|ref|ZP_07896273.1| 23S rRNA (uracil-5-)-methyltransferase [Enterococcus italicus DSM 15952] gi|315482963|gb|EFU73482.1| 23S rRNA (uracil-5-)-methyltransferase [Enterococcus italicus DSM 15952] Length = 458 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 83/392 (21%), Positives = 157/392 (40%), Gaps = 61/392 (15%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIF-------RSEPIHYRMRAEFHIWHDG--DDLYH 60 Y +QL K D L+Q + F+ Q F +P HYR +A+F + + + Sbjct: 92 YNKQLVFKRDLLKQALQKFKPKGYQEFDLRPTIGMDDPWHYRNKAQFQLRYSNKRQRIEA 151 Query: 61 IMFDQQTKERMRIDYFM---PGSL--------LINALMIEMMATIRLEPLLRAKLFQIDY 109 ++ + E + ID + P + L+N + + + + R + +I Sbjct: 152 GLYRPNSHELVPIDDCLVQEPQTQQVLNTTVQLLNKYNVPVYDEKKNSGIFRTLMVRIGV 211 Query: 110 LTSQ-------------SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRAN 156 +T++ S QA++ + RL + + + + +K + + Sbjct: 212 ITNELQLVFITNSEKFPSKQALIRELTTRLPN------VVSIMQNIQNKKTSLVM---GE 262 Query: 157 KTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNA-GINVHMLEWVLAATKGIQGDLLE 215 KT +D ++E++ L R +F Q N +V E + A +++ Sbjct: 263 KTVNLWGKDTIEEQINEVTFDLSAR----AFFQLNPYQTSVLYQEAIRALDYQSSDTVID 318 Query: 216 LYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275 YCG G L +A +V ++ ++ A+ N + N ++++ + Sbjct: 319 AYCGVGTIGLSVAPFVKQVRGMDTISQAITDAKKNAQRKGLTNTHYETGTAEDLIPKWVK 378 Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLS 333 + Y I VDPPR+GLDD + + +P ++Y+SCN +L RDL Sbjct: 379 D------------GYHADAIVVDPPRTGLDDKLLQTLLRHPSKRLVYVSCNVSTLARDLV 426 Query: 334 ILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 L+ + ++ L D FP T E V L +K Sbjct: 427 QLAKVYRVDYLQSVDMFPQTARCEVVVKLTKK 458 >gi|311112240|ref|YP_003983462.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Rothia dentocariosa ATCC 17931] gi|310943734|gb|ADP40028.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Rothia dentocariosa ATCC 17931] Length = 376 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 53/187 (28%), Positives = 78/187 (41%), Gaps = 26/187 (13%) Query: 185 NSFTQPNAGINVHML----EWVLAATKGIQGDLLELYCGNGNFSLVLARHF-DRVLAVEI 239 SF Q N I M EWV L +LYCG G F+L A+ V +EI Sbjct: 208 QSFFQTNTQIAQAMYAQGREWVAQVQPRT---LWDLYCGVGGFALHAAQVMHGEVTGIEI 264 Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299 + ++ +A+ +A + VK + EF R E + V+P Sbjct: 265 SAEAIRSAQRTVAEQGLEGVKFAAGDATEFAVNARETPEM---------------LVVNP 309 Query: 300 PRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHME 357 PR G+ + V+ H++Y SCN +L DL+ + + + L D FP+T H E Sbjct: 310 PRRGIGERLCAWVEGSEIEHVIYSSCNAKTLASDLARMPSYKPVAARVL-DMFPHTNHYE 368 Query: 358 CGVLLVR 364 LL R Sbjct: 369 VMTLLRR 375 >gi|169830726|ref|YP_001716708.1| RNA methyltransferase [Candidatus Desulforudis audaxviator MP104C] gi|169637570|gb|ACA59076.1| RNA methyltransferase, TrmA family [Candidatus Desulforudis audaxviator MP104C] Length = 465 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 97/403 (24%), Positives = 156/403 (38%), Gaps = 66/403 (16%) Query: 5 LLIDQYEQQLAEKV----DRLRQMMLAFQVPNLQIFR-SEPIHYRMRAEFHIWHDGDDLY 59 LL Y +QL K D L ++ +VP +EP HYR +A FH+ D L Sbjct: 88 LLHIDYPEQLRWKTVQVRDALTRLGGLGEVPVANTLGMNEPRHYRNKAHFHVSRDSGRLA 147 Query: 60 HIMFDQQTKERMRIDYFMPGSLLINALMIE------MMATIRLEPLLRAKLF----QIDY 109 + + R+ F+ L+++ L LR L+ Q Y Sbjct: 148 LGFLARGSH---RVTCFVDADGGSGCLLVQRDLLRVAARAAALLESLRVPLYDWETQRGY 204 Query: 110 L-------TSQSDQAIVTLIYHRLLDDAWRECAIRLR-------------DALHARKYQI 149 L + + + ++ L+ R RE A RL +AL R Sbjct: 205 LRNLLLRRAAATGEIMLVLVTGRQNWPGEREFAERLTAEEPGVVSVIRNVNALETR---- 260 Query: 150 QLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQ--PNAGINVHMLEWVLAATK 207 +L+G N+ + + E L L +R SF Q P + + + A Sbjct: 261 ELLGPENRVRA--GEPAITEHLG----GLKFRIGPASFFQVNPEQAEKTYEIARLFAGLT 314 Query: 208 GIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267 G + +++ Y G G +L LA V+ E +V A+ N N + NV+ + + + Sbjct: 315 GKE-TVVDAYSGIGTIALFLASRAKSVIGFEALPAAVADAQENALRNGIKNVRFEQGAVE 373 Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNP 325 + L + R +DPPR G A + + + P ++Y+SC P Sbjct: 374 DL------------LPEWAARGRRVDVAVLDPPRRGCGPAALEALGRLRPRRVVYVSCAP 421 Query: 326 DSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVRKPS 367 +L RDL L+ + ++ D FP T H+EC V L RK S Sbjct: 422 ATLARDLGRLAELGFDVVKVQPVDMFPQTSHIECVVSLTRKHS 464 >gi|332299402|ref|YP_004441323.1| RNA methyltransferase, TrmA family [Porphyromonas asaccharolytica DSM 20707] gi|332176465|gb|AEE12155.1| RNA methyltransferase, TrmA family [Porphyromonas asaccharolytica DSM 20707] Length = 493 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 57/194 (29%), Positives = 87/194 (44%), Gaps = 20/194 (10%) Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVL 235 L YR SF Q N+ + E V + + GD + +LY G G + LA+ V+ Sbjct: 297 LRYRIGPKSFYQTNSRQAERLYEKVREYAQ-LTGDEVVYDLYTGAGTIANYLAQSCRSVI 355 Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY-RFKT 294 +E +VE A N N + N K L D + ++ R Sbjct: 356 GIEYVPEAVEDAFVNRDQNGITNATFYAGDMKAI------------LTDDFVAAHGRPDV 403 Query: 295 IFVDPPRSGLDDATVGMV-QAYPH-ILYISCNPDSLCRDLSIL--STTHTIERLALFDQF 350 + DPPR+G+D V ++ +A P I+Y+SCNP + RDL++L + R D F Sbjct: 404 LVTDPPRAGMDTPVVDVILRAAPQRIVYVSCNPATQARDLALLMAEGQYRAVRACAVDMF 463 Query: 351 PYTRHMECGVLLVR 364 P+T H+E LL + Sbjct: 464 PHTHHVETVALLSK 477 >gi|169842994|ref|XP_001828228.1| tRNA methyltransferase [Coprinopsis cinerea okayama7#130] gi|116510684|gb|EAU93579.1| tRNA methyltransferase [Coprinopsis cinerea okayama7#130] Length = 564 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 63/258 (24%), Positives = 114/258 (44%), Gaps = 46/258 (17%) Query: 142 LHARKYQIQLIGRAN-KTKICLDRDYVDERLTVA---------GRTLIYRQIEN------ 185 +H K + L+ R + T + +D D VD RL+ A ++L+ ++ + Sbjct: 316 VHTYKKGVSLLFRESLDTSVNIDDDSVD-RLSDAFNKQICVTDPKSLVRERVGDWIFEYN 374 Query: 186 --SFTQPNAGINVHMLEWVL-------AATKGIQGDLLELYCGNGNFSLVLARHFDRVLA 236 SF Q N + + + ++V A T L++ YCG G F +VL+ F +V Sbjct: 375 AGSFFQNNNSVLLPLTDYVRNAIFPPDAPTPSTLTHLVDTYCGAGLFGIVLSPSFQKVAG 434 Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296 +E+++ S+ A N N ++ KI +A F ++D + Sbjct: 435 IELSQDSIRFATRNAELNKISKDKIS-------FRAGNAGEIFAVVQDFPADQ---TAVL 484 Query: 297 VDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSIL--------STTHTIERLAL 346 +DPPR G D+ + + + I+Y+SCN + RD+ + + +T++ + Sbjct: 485 IDPPRKGCDEFFIKQLLEFGPKTIVYVSCNVHTQARDVGQIMEAGRTGKAKKYTLDSVRG 544 Query: 347 FDQFPYTRHMECGVLLVR 364 FD FP T H+E +L R Sbjct: 545 FDLFPQTAHVESVAVLTR 562 >gi|78046937|ref|YP_363112.1| 23S rRNA 5-methyluridine methyltransferase [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78035367|emb|CAJ23012.1| RNA methyltransferase [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 477 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 57/192 (29%), Positives = 91/192 (47%), Gaps = 18/192 (9%) Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLA 236 L +R ++ F Q NA +N M+ +A + D +L+L+CG GNF+L LAR V+ Sbjct: 300 LAFRPLD--FIQVNASLNQKMIAHAVALLEAKPDDRVLDLFCGLGNFTLPLARVVREVVG 357 Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296 VE V A+ N N ++N + + + TQ R + F + Sbjct: 358 VEGDAGLVARAKENAQRNGLDNAQ---FHAADLTQDQRSAPWMRQ---------GFDKLL 405 Query: 297 VDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDLSILSTTH--TIERLALFDQFPYT 353 +DPPRSG + + ++ + I+Y+SC+P SL RD L T+ D FP+T Sbjct: 406 LDPPRSGALEVLQQLPLKTFDRIVYVSCHPGSLARDAGYLVNDQGFTLVCAGAMDMFPHT 465 Query: 354 RHMECGVLLVRK 365 H+E + R+ Sbjct: 466 AHVESIAVFERR 477 >gi|186475730|ref|YP_001857200.1| 23S rRNA 5-methyluridine methyltransferase [Burkholderia phymatum STM815] gi|184192189|gb|ACC70154.1| RNA methyltransferase, TrmA family [Burkholderia phymatum STM815] Length = 473 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 94/351 (26%), Positives = 149/351 (42%), Gaps = 42/351 (11%) Query: 35 IFRSEPIH-----YRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIE 89 +FR PIH YR RA + H ++ + K D M ++ + + Sbjct: 143 VFR--PIHGPSWGYRYRARLTVRHVAKKGGVLVGFHERKSSYVAD--MTSCEVLPPHVSD 198 Query: 90 MMATIR--LEPL-LRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARK 146 M+ +R +E L +R ++ QI+ S A+V I + +A E +R LH + Sbjct: 199 MLVPLRHMVEALSIRDRMPQIELAVGASVTALVLRILEPI--NAADEQLLRDFADLHNVQ 256 Query: 147 YQIQLIGRANKTKI-CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA 205 + +Q G + LDR +D L G + +R + FTQ N IN ++ L Sbjct: 257 FWLQPKGPDSVYPFYPLDRQ-LDYTLPEFGIRMPFRPTD--FTQVNHQINRVLVGRALRL 313 Query: 206 TKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRM 264 + D +L+L+CG GNF+L LAR V+ +E ++ A N N V+ Sbjct: 314 LAPAKTDRVLDLFCGIGNFTLPLARISREVVGIEGSEVLTSRALDNAKENGVD------- 366 Query: 265 SSKEFTQAMRREREFNRLKDIDIHSY-RFKTIFVDPPRSG--------LDDATVGMVQAY 315 S F R + DI + F +DPPR G D A G + Sbjct: 367 SHTSFAC-----RNLFEVTADDIRALGHFDKYLIDPPREGALAVSKALADIAQSGEGRLP 421 Query: 316 PHILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTRHMECGVLLVR 364 I+Y+SCNP +L RD +L + ++ + + FP+T H+E L R Sbjct: 422 TRIVYVSCNPATLARDAGLLVHEAGYRLKGAGVVNMFPHTSHVESIALFER 472 >gi|313886024|ref|ZP_07819762.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Porphyromonas asaccharolytica PR426713P-I] gi|312924554|gb|EFR35325.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Porphyromonas asaccharolytica PR426713P-I] Length = 493 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 57/194 (29%), Positives = 87/194 (44%), Gaps = 20/194 (10%) Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVL 235 L YR SF Q N+ + E V + + GD + +LY G G + LA+ V+ Sbjct: 297 LRYRIGPKSFYQTNSRQAERLYEKVREYAQ-LTGDEVVYDLYTGAGTIANYLAQSCRSVI 355 Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY-RFKT 294 +E +VE A N N + N K L D + ++ R Sbjct: 356 GIEYVPEAVEDAFVNRDQNGITNATFYAGDMKAI------------LTDDFVAAHGRPDV 403 Query: 295 IFVDPPRSGLDDATVGMV-QAYPH-ILYISCNPDSLCRDLSIL--STTHTIERLALFDQF 350 + DPPR+G+D V ++ +A P I+Y+SCNP + RDL++L + R D F Sbjct: 404 LVTDPPRAGMDTPVVDVILRAAPQRIVYVSCNPATQARDLALLMAEGQYRAVRACAVDMF 463 Query: 351 PYTRHMECGVLLVR 364 P+T H+E LL + Sbjct: 464 PHTHHVETVALLSK 477 >gi|146300255|ref|YP_001194846.1| RNA methyltransferase [Flavobacterium johnsoniae UW101] gi|146154673|gb|ABQ05527.1| RNA methyltransferase, TrmA family [Flavobacterium johnsoniae UW101] Length = 470 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 70/283 (24%), Positives = 118/283 (41%), Gaps = 36/283 (12%) Query: 96 LEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQI---QLI 152 P + L + + + S I+ LI D A RE + D L+ + QI Q + Sbjct: 205 FNPREHSGLLRTLMIRTASTGEIMVLIQFFEDDKANRELVL---DHLYEKFPQITSLQYV 261 Query: 153 GRANKTKICLDRDYVDERLTVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWVLA 204 A + D+D GR I ++E SF Q N+ + L + Sbjct: 262 VNAKQNDTIYDQDI----KLYKGRNYILEEMEGLKFSINAKSFYQTNSD-QAYELYKITR 316 Query: 205 ATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262 G+ G+ + +LY G G + +++ +V+ VE ++ A+ N N++ N + Sbjct: 317 DYAGLTGEETVYDLYTGTGTIAQFVSKKAKKVIGVESVPEAILDAKANAERNNITNCEFF 376 Query: 263 RMSSKE-FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHIL 319 K F +A I H + I DPPR G+ A + + A ++ Sbjct: 377 VGDMKVVFNEAF-----------IAQHG-KPDVIITDPPRDGMHAAVIDQILKIAPKKVV 424 Query: 320 YISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362 Y+SCN + RDL+++ + + R+ D FP T H+E VLL Sbjct: 425 YVSCNSATQARDLALMDEKYKVTRVRPVDMFPQTHHVENVVLL 467 >gi|77406146|ref|ZP_00783219.1| RNA methyltransferase, TrmA family [Streptococcus agalactiae H36B] gi|77175269|gb|EAO78065.1| RNA methyltransferase, TrmA family [Streptococcus agalactiae H36B] Length = 453 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 43/155 (27%), Positives = 68/155 (43%), Gaps = 15/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ Y G G L +A+ V VE+ + +V A+ N N + N V S++ Sbjct: 308 VIDAYSGIGTIGLSVAKQVKHVYGVEVVEKAVSDAKENATRNGITNSTYVADSAENAMAK 367 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV--GMVQAYPHILYISCNPDSLCR 330 +E + I VDPPR GL ++ V I YISCN ++ R Sbjct: 368 WLKE------------GIKPTVIMVDPPRKGLTESFVYSAAQTKADKITYISCNSATMAR 415 Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364 D+ + + + ++ D FP T H+EC LL R Sbjct: 416 DIKLFEELGYHLVKIQPVDLFPMTHHVECVALLQR 450 >gi|77413832|ref|ZP_00790011.1| RNA methyltransferase, TrmA family [Streptococcus agalactiae 515] gi|77160132|gb|EAO71264.1| RNA methyltransferase, TrmA family [Streptococcus agalactiae 515] Length = 453 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 43/155 (27%), Positives = 68/155 (43%), Gaps = 15/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ Y G G L +A+ V VE+ + +V A+ N N + N V S++ Sbjct: 308 VIDAYSGIGTIGLSVAKQVKHVYGVEVVEKAVSDAKENATRNGITNSTYVADSAENAMAK 367 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV--GMVQAYPHILYISCNPDSLCR 330 +E + I VDPPR GL ++ V I YISCN ++ R Sbjct: 368 WLKE------------GIKPTVIMVDPPRKGLTESFVYSAAQTKADKITYISCNSATMAR 415 Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364 D+ + + + ++ D FP T H+EC LL R Sbjct: 416 DIKLFEELGYHLVKIQPVDLFPMTHHVECVALLQR 450 >gi|170056918|ref|XP_001864248.1| 23S rRNA methyltransferase [Culex quinquefasciatus] gi|167876535|gb|EDS39918.1| 23S rRNA methyltransferase [Culex quinquefasciatus] Length = 619 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 45/165 (27%), Positives = 76/165 (46%), Gaps = 20/165 (12%) Query: 210 QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269 Q +L++ CG G L A+H +VL VEI ++ A +N N + N K ++ + Sbjct: 418 QTSILDICCGTGTIGLCFAKHCKQVLGVEIVAEAIADATHNAKENGIENCKFYTGNADDL 477 Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV---QAYPHILYISCNPD 326 ++ R N KD D+ VDPPR+GL ++ + + ++Y+SC+P Sbjct: 478 ITSLVRNA--NVQKDEDL------VAIVDPPRAGLHIRSITQLRNARGLNRLIYVSCSPQ 529 Query: 327 SLCRDLS-ILSTTHTIERLALF--------DQFPYTRHMECGVLL 362 S ++ + ++ + R F D FP+T H E VL Sbjct: 530 SAVKNWADLMRPRSKVMRGGPFMPKRAIPVDLFPHTPHAELIVLF 574 >gi|163732989|ref|ZP_02140433.1| RNA methyltransferase, putative [Roseobacter litoralis Och 149] gi|161393524|gb|EDQ17849.1| RNA methyltransferase, putative [Roseobacter litoralis Och 149] Length = 408 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 49/175 (28%), Positives = 86/175 (49%), Gaps = 16/175 (9%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 +F Q +L V T+G G +++L+ G G F+L LARH + V AVE + Sbjct: 237 GAFLQATLHGEAALLSAVREITRG-AGRIVDLFAGCGTFALPLARHSE-VHAVEGDGDMI 294 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 A + H + +K V +++ RR L +D + +DPPR+G Sbjct: 295 AA--LDAGWRHADGLKNVTTETRDL---FRRPLVPMELTKVD-------AVVLDPPRAGA 342 Query: 305 DDATVGMVQA-YPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHME 357 + V + +A P + Y+SCNP + RD ++L + + ++ + + DQF ++ H+E Sbjct: 343 EAQVVELAKADVPRLAYVSCNPVTFARDAAVLCAAGYVLDWVQVVDQFRWSAHVE 397 >gi|167581700|ref|ZP_02374574.1| 23S rRNA 5-methyluridine methyltransferase [Burkholderia thailandensis TXDOH] Length = 465 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 55/189 (29%), Positives = 82/189 (43%), Gaps = 22/189 (11%) Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 FTQ N IN ++ L +GD +L+L+CG GNF+L LAR V+ +E ++ Sbjct: 287 FTQVNHQINRVLVGRALRLLAPERGDRVLDLFCGIGNFTLPLARLAREVVGIEGSETLTS 346 Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG-- 303 A N N V+ F E + L+ + F VDPPR G Sbjct: 347 RALANAKENGVDG-------HTSFASRNLFEVTADDLRALGA----FDKFLVDPPREGAL 395 Query: 304 ------LDDATVGMVQAYPHILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTRH 355 + A G I+Y+SCNP +L RD +L + ++ + + FP+T H Sbjct: 396 AVSKALAEIAQSGEGPLPARIVYVSCNPSTLARDAGLLVHEAGYRLKGAGVVNMFPHTSH 455 Query: 356 MECGVLLVR 364 +E L R Sbjct: 456 VESIALFER 464 >gi|295394774|ref|ZP_06804989.1| TrmA family RNA methyltransferase [Brevibacterium mcbrellneri ATCC 49030] gi|294972370|gb|EFG48230.1| TrmA family RNA methyltransferase [Brevibacterium mcbrellneri ATCC 49030] Length = 417 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 44/153 (28%), Positives = 77/153 (50%), Gaps = 22/153 (14%) Query: 209 IQGDLLELYCGNGNFSLVLARHFD-RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267 ++GD+ +L+CG G ++++AR RV VE + ++E+AR N + + Sbjct: 275 VRGDVADLFCGAGLLAVMVARETGARVWGVEGSALAIESARSN-----------AKRAGV 323 Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNP 325 + T + R + + L D T+ VDPPR+GLD A + ++ + ++Y+SC+ Sbjct: 324 DATFDVGRVEKLDALTGAD-------TVVVDPPRAGLDPAVIRLIASSTCGRVVYVSCDG 376 Query: 326 DSLCRDLSILSTTHTIER-LALFDQFPYTRHME 357 + RD L + R + FD FP T H+E Sbjct: 377 ATFSRDAQRLQNSGFQCRDIQAFDLFPLTAHVE 409 >gi|260583348|ref|ZP_05851121.1| predicted protein [Haemophilus influenzae NT127] gi|260093619|gb|EEW77534.1| predicted protein [Haemophilus influenzae NT127] Length = 80 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 34/79 (43%), Positives = 46/79 (58%) Query: 45 MRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKL 104 MRAEF +WHD DLYHIMFDQ TK+R R+D F + LIN +M ++ ++ + L Sbjct: 1 MRAEFRVWHDQGDLYHIMFDQATKQRYRVDSFPIANQLINQMMQAILPLLKAKDLTHLFF 60 Query: 105 FQIDYLTSQSDQAIVTLIY 123 YL + I+ LIY Sbjct: 61 HNAYYLEIGENFIIIRLIY 79 >gi|327461982|gb|EGF08311.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis SK1057] Length = 456 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 42/157 (26%), Positives = 68/157 (43%), Gaps = 14/157 (8%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L++ YCG G A+ + ++I ++E A+ N N +++E Sbjct: 308 LIDAYCGVGTIGFAFAKRVKSLRGMDIIPEAIEDAKRNAKRMGFGNTLYEAGTAEEIIPR 367 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCR 330 E YR + VDPPR+GLDD + + Y ++Y+SCN +L R Sbjct: 368 WYAE------------GYRADALIVDPPRTGLDDKLLETIVRYAPEKMVYVSCNVSTLAR 415 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRKPS 367 DL LS + + + D F +T E V L ++ S Sbjct: 416 DLVKLSQVYDVHYIQSVDMFSHTARTEAVVKLSKRDS 452 >gi|66518990|ref|XP_396538.2| PREDICTED: tRNA (uracil-5-)-methyltransferase homolog A-like [Apis mellifera] Length = 568 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 52/212 (24%), Positives = 95/212 (44%), Gaps = 28/212 (13%) Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNA-GINVHMLEWVLAATKGIQGDLLELYCGNGNFS 224 Y++E+L + +R +F Q N G V + A + LL++ CG G Sbjct: 361 YIEEKLL----DMKFRISPQAFFQVNTLGAQVLYKAAIDLAKPNVDTALLDICCGTGTIG 416 Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284 L +++ V +E+ + +++ A+ N+ AN ++N + +++ + R R Sbjct: 417 LAFSKYCGEVFGLEMIEDAIKDAKENVIANKISNCEFFVGKAEDILSPVIR-----RTTK 471 Query: 285 IDIHSYRFKTIFVDPPRSGLDD---ATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTI 341 DI + VDPPR+GL T+ + ++YISC+P + R+L L+ + Sbjct: 472 PDIIA------IVDPPRAGLHQRALLTIRKAKKLSRLIYISCDPRAAMRNLIDLARPISK 525 Query: 342 E---------RLALFDQFPYTRHMECGVLLVR 364 + + D FPYT+H E + L R Sbjct: 526 QYVGEPMVPVKAVAVDMFPYTKHCELVLCLER 557 >gi|332687203|ref|YP_004456977.1| TrmA family RNA methyltransferase [Melissococcus plutonius ATCC 35311] gi|332371212|dbj|BAK22168.1| RNA methyltransferase, TrmA family [Melissococcus plutonius ATCC 35311] Length = 212 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 43/155 (27%), Positives = 70/155 (45%), Gaps = 14/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G + +AR V ++ ++E A+ N A VN ++ + + Sbjct: 69 IIDAYCGVGTIGISIARKVKEVRGMDTIPQAIEDAKQN--AKKVN-------ATNTYYEV 119 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCR 330 E+ + + + I VDPPR GLD + + +P ++YISCN +L R Sbjct: 120 GNAEKLLPKWLE---QGFIPDGIIVDPPRVGLDKKLLQTILNFPPKKLVYISCNVSTLAR 176 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 DL L+ ++ L D FP T E L RK Sbjct: 177 DLVSLTKVFKVDYLQSIDMFPQTARCEVVAKLTRK 211 >gi|240274747|gb|EER38262.1| tRNA(m5U54)methyltransferase [Ajellomyces capsulatus H143] Length = 562 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 49/165 (29%), Positives = 78/165 (47%), Gaps = 27/165 (16%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 LL+ Y G+G F++ L+ F L ++I+ S+EAAR N AN + N + + Sbjct: 399 LLDAYSGSGLFTVTLSPIFLSSLGIDISADSIEAARRNARANKLANTGFAAADAAAIFK- 457 Query: 273 MRREREFNRLKDIDIHSYRFKTIFV-DPPRSGLDDATVGMVQAY--PHILYISCNPDSLC 329 D+ KT+ V DPPR G D+ + + +Y ++Y+SCN + Sbjct: 458 -------------DVPYPPDKTLLVIDPPRKGCDNNFLQQLLSYGPARVVYVSCNVHTQA 504 Query: 330 RDLSIL---------STTHTIERLALFDQFPYTRHMECGVLLVRK 365 RD+ +L + IE + FD FP T H+E GV ++ K Sbjct: 505 RDVGVLVQGGNFKGEEVRYEIESIKGFDFFPQTGHVE-GVAILNK 548 >gi|170039429|ref|XP_001847537.1| RNA m5u methyltransferase [Culex quinquefasciatus] gi|167863014|gb|EDS26397.1| RNA m5u methyltransferase [Culex quinquefasciatus] Length = 622 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 45/165 (27%), Positives = 76/165 (46%), Gaps = 20/165 (12%) Query: 210 QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269 Q +L++ CG G L A+H +VL VEI ++ A +N N + N K ++ + Sbjct: 421 QTSILDICCGTGTIGLCFAKHCKQVLGVEIVAEAIADATHNAKENGIENCKFYTGNADDL 480 Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV---QAYPHILYISCNPD 326 ++ R N KD D+ VDPPR+GL ++ + + ++Y+SC+P Sbjct: 481 ITSLVRNA--NVQKDEDL------VAIVDPPRAGLHIRSITQLRNARGLNRLIYVSCSPQ 532 Query: 327 SLCRDLS-ILSTTHTIERLALF--------DQFPYTRHMECGVLL 362 S ++ + ++ + R F D FP+T H E VL Sbjct: 533 SAVKNWADLMRPRSKVMRGGPFMPKRAIPVDLFPHTPHAELIVLF 577 >gi|329895829|ref|ZP_08271185.1| hypothetical RNA methyltransferase [gamma proteobacterium IMCC3088] gi|328922124|gb|EGG29482.1| hypothetical RNA methyltransferase [gamma proteobacterium IMCC3088] Length = 390 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 74/273 (27%), Positives = 121/273 (44%), Gaps = 39/273 (14%) Query: 100 LRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQL-IGRANKT 158 L+A + ++ ++SDQ IV + +L D +AL AR + L IGR KT Sbjct: 150 LKASADALGFVAARSDQ-IVDVEQCVVLSDH--------NNALLARIREQDLGIGRRRKT 200 Query: 159 KICLD-RDYVD-ERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLE 215 + +D D VD E ++ R F Q N N ML W+ G+ LE Sbjct: 201 WVTIDIADEVDFEHISFNQRL--------PFRQGNTAQNQEMLGWLTKVLHGLNCKRALE 252 Query: 216 LYCGNGNFSLVL-ARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274 L+ G+GN + L A D + VE+ +++ R ++ S+K F + Sbjct: 253 LFAGSGNLTQALVASGVDDITVVEVVPEALDTLRQSLP------------STKAFALDLF 300 Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSG--LDDATVGMVQAYPHILYISCNPDSLCRDL 332 + + + L + S + + +DPPR G L V + + I+YISC+ S RD+ Sbjct: 301 DKTKLSELVSL---SADAELLLLDPPRDGFALLGQLVSQLPSLKSIIYISCDLASFERDV 357 Query: 333 SILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 ++L ++ L D +P T H+E + RK Sbjct: 358 ALLCDEFSLLELQPLDMYPQTPHVELMSVWSRK 390 >gi|253688084|ref|YP_003017274.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Pectobacterium carotovorum subsp. carotovorum PC1] gi|259495633|sp|C6DEQ3|RUMB_PECCP RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName: Full=23S rRNA(M-5-U747)-methyltransferase gi|251754662|gb|ACT12738.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 376 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 44/156 (28%), Positives = 71/156 (45%), Gaps = 18/156 (11%) Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271 + +L+CG G F L A R+ +EI+ ++ AR + + V+ + S +F Sbjct: 236 SMWDLFCGVGGFGLHCASPEMRLTGIEISAEAIACARRSAEQLGLKQVEFQALDSTQFAT 295 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLC 329 E + V+PPR G+ + A +ILY SCN +S+ Sbjct: 296 GKAEIPEL---------------VLVNPPRRGIGSELCTYLSRMAPDYILYSSCNAESMA 340 Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 +D++ L T + R+ LFD FP+T H E LL R+ Sbjct: 341 KDMTEL-TNYRALRVQLFDMFPHTAHYEVLTLLKRE 375 >gi|117921747|ref|YP_870939.1| 23S rRNA methyluridine methyltransferase [Shewanella sp. ANA-3] gi|143582907|sp|A0L0G4|RUMB_SHESA RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName: Full=23S rRNA(M-5-U747)-methyltransferase gi|117614079|gb|ABK49533.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Shewanella sp. ANA-3] Length = 384 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 47/186 (25%), Positives = 83/186 (44%), Gaps = 23/186 (12%) Query: 185 NSFTQPNAGINVHML----EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240 SF Q N + + EWV L +L+CG G F L A + +EI Sbjct: 215 KSFFQTNPQVAAKLYQTAREWV---ADFAPASLWDLFCGVGGFGLHCAAKDIPLTGIEIE 271 Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300 ++ A+ + ++ V+ + + S +F + + + + I V+PP Sbjct: 272 AEAIACAKMSAQLMGLDKVEFMALDSTDFAKG-------------EAAQTKPELIIVNPP 318 Query: 301 RSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMEC 358 R G+ ++ + + ILY SCNP +L +DL + + + ++ LFD FP++ H E Sbjct: 319 RRGIGESLCHSLSEFAPKAILYSSCNPKTLAKDLGHIR-GYRLTKVQLFDLFPHSDHFEV 377 Query: 359 GVLLVR 364 LLV+ Sbjct: 378 LALLVK 383 >gi|221135234|ref|ZP_03561537.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Glaciecola sp. HTCC2999] Length = 484 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 51/186 (27%), Positives = 86/186 (46%), Gaps = 21/186 (11%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 + F Q NA +N M+ + D +++L+CG+GNFS+ +A+ + VL +E + Sbjct: 314 DDFIQVNASLNQAMIYTSIDLLALAPDDRVVDLFCGSGNFSVPIAKQTEYVLGIEGVEAM 373 Query: 244 VEAARYNIAANHVNNVKIVR--MSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301 V+ A A+ V+NV + +++ E A++ + N+L +DP R Sbjct: 374 VQQANQGAVASGVDNVTFLHADLTTSEAMHAIKAAK-CNKL-------------LLDPSR 419 Query: 302 SGLDDATVGMV--QAYPHILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMEC 358 G A + V Q + I+Y+SCNP S D+ +L + FD F T H E Sbjct: 420 EGA-KAILAQVDLQQFERIVYVSCNPQSWVHDIQLLLDAGFACQHTQFFDMFAGTTHTEL 478 Query: 359 GVLLVR 364 + R Sbjct: 479 VSVFTR 484 >gi|325679453|ref|ZP_08159035.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Ruminococcus albus 8] gi|324108852|gb|EGC03086.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Ruminococcus albus 8] Length = 397 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 43/155 (27%), Positives = 71/155 (45%), Gaps = 15/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G ++ A++ V VE+ K + A N N + N+K + +F QA Sbjct: 247 VIDAYCGTGTIGIICAKNGAEVTGVELNKSACRDAHKNAELNGLENIKFCNDDAGKFMQA 306 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCR 330 M + E D+ + +DPPR+G +G A I+Y+SC ++L R Sbjct: 307 MASKGE-----GCDV-------LIMDPPRAGASREFIGCAGRLAPQKIVYVSCKIETLER 354 Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364 DL + + + D FP+T +E LL R Sbjct: 355 DLKAFRREGYKVTYIQPVDMFPHTMGIETVCLLER 389 >gi|225558321|gb|EEH06605.1| tRNA methyltransferase [Ajellomyces capsulatus G186AR] Length = 562 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 47/164 (28%), Positives = 77/164 (46%), Gaps = 25/164 (15%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 LL+ Y G+G F++ L+ F L ++I+ S+EAAR N AN + N + Sbjct: 399 LLDAYSGSGLFTVTLSPIFLSSLGIDISADSIEAARRNARANKLANTGFAAADAAAI--- 455 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330 KD+ + + +DPPR G D+ + + +Y ++Y+SCN + R Sbjct: 456 ---------FKDVPYPPDK-TLLIIDPPRKGCDNNFLQQLLSYGPARVVYVSCNVHTQAR 505 Query: 331 DLSIL---------STTHTIERLALFDQFPYTRHMECGVLLVRK 365 D+ +L + IE + FD FP T H+E GV ++ K Sbjct: 506 DVGVLVQGGNFKGEEVRYEIESIKGFDFFPQTGHVE-GVAILNK 548 >gi|325094100|gb|EGC47410.1| tRNA(m5U54)methyltransferase [Ajellomyces capsulatus H88] Length = 562 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 49/165 (29%), Positives = 78/165 (47%), Gaps = 27/165 (16%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 LL+ Y G+G F++ L+ F L ++I+ S+EAAR N AN + N + + Sbjct: 399 LLDAYSGSGLFTVTLSPIFLSSLGIDISADSIEAARRNARANKLANTGFAAADAAAIFK- 457 Query: 273 MRREREFNRLKDIDIHSYRFKTIFV-DPPRSGLDDATVGMVQAY--PHILYISCNPDSLC 329 D+ KT+ V DPPR G D+ + + +Y ++Y+SCN + Sbjct: 458 -------------DVPYPPDKTLLVIDPPRKGCDNNFLQQLLSYGPARVVYVSCNVHTQA 504 Query: 330 RDLSIL---------STTHTIERLALFDQFPYTRHMECGVLLVRK 365 RD+ +L + IE + FD FP T H+E GV ++ K Sbjct: 505 RDVGVLVQGGNFKGEEVRYEIESIKGFDFFPQTGHVE-GVAILNK 548 >gi|166712829|ref|ZP_02244036.1| 23S rRNA 5-methyluridine methyltransferase [Xanthomonas oryzae pv. oryzicola BLS256] Length = 444 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 58/192 (30%), Positives = 90/192 (46%), Gaps = 18/192 (9%) Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLA 236 L +R ++ F Q NA +N M+ LA D +L+L+CG GNF+L LAR V+ Sbjct: 267 LAFRPLD--FIQVNASLNQKMIVHALALLDAKPDDRVLDLFCGLGNFTLPLARVVREVVG 324 Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296 VE V A+ N N ++N + + + TQ R + D + Sbjct: 325 VEGDAGLVARAKDNAQRNGLDNAQFY---AADLTQDQRNAAWMRQGLD---------KLL 372 Query: 297 VDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDLSILSTTH--TIERLALFDQFPYT 353 +DPPRSG + + ++ + I+Y+SC+P SL RD L T+ D FP+T Sbjct: 373 LDPPRSGALEVLQQLPLKTFERIVYVSCHPGSLARDAGYLVNEQGFTLVSAGAMDMFPHT 432 Query: 354 RHMECGVLLVRK 365 H+E + R+ Sbjct: 433 AHVESIAVFERR 444 >gi|308177784|ref|YP_003917190.1| RNA methyltransferase [Arthrobacter arilaitensis Re117] gi|307745247|emb|CBT76219.1| putative RNA methyltransferase [Arthrobacter arilaitensis Re117] Length = 440 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 77/327 (23%), Positives = 137/327 (41%), Gaps = 56/327 (17%) Query: 70 RMRIDYFM--PGSLLINALMIEMMATIRLEPLLR-----AKLFQIDY---------LTSQ 113 R R+ Y + G+L ++A + +I PL L+ +DY ++SQ Sbjct: 139 RTRMSYSVDAQGNLAMSAFRSNELISISQMPLAHPAIEATGLYSVDYSGIERVEAAVSSQ 198 Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTV 173 D+ ++ L+ D A + A + + ++ + Q G A K L T+ Sbjct: 199 DDRTVLILLA-EARDGAAAKVAKQFPEGVNVASFS-QHGGSAADGKGSLQ--------TL 248 Query: 174 AGRT-LIYRQIENSFTQPNAGI-NVH------MLEWVLAATKGIQGD-LLELYCGNGNFS 224 AG LI + + F G VH + V+ T+ G+ + +LY G G FS Sbjct: 249 AGSAHLIEKVLGEKFRITGEGFWQVHREAASLLSSRVIELTEPAAGEQIADLYAGAGLFS 308 Query: 225 LVLARHFD---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281 + LA+ RV ++E A + A+ N+ ++++QA R Sbjct: 309 VPLAKAVGTGGRVFSIEGAPGTHADAKKNL---------------RDYSQATVIRGRVER 353 Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLS-ILSTT 338 + H + +DPPR+GL+ + I Y+SC+P + RD + ++ Sbjct: 354 VLRQVAHDATLDAVVLDPPRTGLEKQVAAELASSGVSRICYVSCDPAAFARDTARLMGRG 413 Query: 339 HTIERLALFDQFPYTRHMECGVLLVRK 365 + ++ L + D +P+T HME L VR+ Sbjct: 414 YELDHLEIHDLYPHTHHMESIGLFVRR 440 >gi|315656863|ref|ZP_07909750.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315492818|gb|EFU82422.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 347 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 42/162 (25%), Positives = 73/162 (45%), Gaps = 13/162 (8%) Query: 215 ELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIA--ANHVNNVKIVRMSSKEFTQ 271 +LYCG G F+ L+ +V VE+ P+++ A++ + A+ V + + + T Sbjct: 180 DLYCGVGGFAFALSSAGVAQVTGVEVVGPAIDGAKHAVTELASATATVPVEPSNKNDGTP 239 Query: 272 AMRREREFNRLKDIDIHSYRFKT-------IFVDPPRSGLDDATVGMVQ--AYPHILYIS 322 D + + V+PPR GL ++ PH++Y S Sbjct: 240 NTPSAAPRPHFITADATKWAVNQTLMPPDLVVVNPPRRGLGPDLSSWLERSGIPHLIYSS 299 Query: 323 CNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 C P++L DL + ++ I L D FP+T H+EC VL+ + Sbjct: 300 CFPETLVEDLRRMR-SYQIRAAKLVDMFPHTSHVECVVLMSK 340 >gi|148927467|ref|ZP_01810970.1| (Uracil-5)-methyltransferase [candidate division TM7 genomosp. GTL1] gi|147887191|gb|EDK72658.1| (Uracil-5)-methyltransferase [candidate division TM7 genomosp. GTL1] Length = 318 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 48/157 (30%), Positives = 76/157 (48%), Gaps = 25/157 (15%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAA--NHVNNVKIVRMSSKEFT 270 +++LY G G+ L + + VEI+ +V R N+ A H N V S+ E+ Sbjct: 183 VIDLYSGVGSIGLTIGGKNPTL--VEISGSAVAEMRRNLRALGRHANIVHASSESALEYI 240 Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG--MVQAYPHILYISCNPDSL 328 + TI VDPPR+GL + + +++A I+Y+SCNP + Sbjct: 241 NSN-------------------ATIIVDPPRAGLHEKVIQELLIKAPERIIYLSCNPVTQ 281 Query: 329 CRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 RD+ +LS T+ I ++ FP T H+E V+L RK Sbjct: 282 ARDVMMLSETYGIREHIGYNFFPRTPHIEHLVILDRK 318 >gi|300824000|ref|ZP_07104122.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli MS 119-7] gi|331667233|ref|ZP_08368098.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli TA271] gi|331676647|ref|ZP_08377343.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli H591] gi|300523511|gb|EFK44580.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli MS 119-7] gi|331065589|gb|EGI37482.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli TA271] gi|331075336|gb|EGI46634.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli H591] Length = 375 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 43/155 (27%), Positives = 72/155 (46%), Gaps = 18/155 (11%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + +L+CG G F L A ++ +EIA ++ A+ + A + ++ + S +F A Sbjct: 237 MWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATA 296 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCR 330 E + V+PPR G+ + A I+Y SCN ++ + Sbjct: 297 QGEVPEL---------------VLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAK 341 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 D+ L + IER+ LFD FP+T H E LLV++ Sbjct: 342 DIRELPG-YRIERVQLFDMFPHTAHYEVMTLLVKQ 375 >gi|146311031|ref|YP_001176105.1| 23S rRNA methyluridine methyltransferase [Enterobacter sp. 638] gi|167012639|sp|A4W8M4|RUMB_ENT38 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName: Full=23S rRNA(M-5-U747)-methyltransferase gi|145317907|gb|ABP60054.1| 23S rRNA m(5)U-747 methyltransferase [Enterobacter sp. 638] Length = 375 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 43/155 (27%), Positives = 70/155 (45%), Gaps = 18/155 (11%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + +L+CG G F L A + +EI+ ++ A+ + A + ++ + S EF Sbjct: 237 MWDLFCGVGGFGLHCATPQMTLTGIEISPEAIACAKQSAAQLGLTDLHFQALDSAEFATG 296 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCR 330 R E + V+PPR G+ + Q P I+Y SCN ++ + Sbjct: 297 QGRVPEL---------------VLVNPPRRGIGKTLCDYLSQMAPDFIIYSSCNAQTMAK 341 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 D L + +ER+ LFD FP+T H E LLV+ Sbjct: 342 DFGHLPG-YRVERVQLFDMFPHTAHYEVLTLLVKS 375 >gi|308186221|ref|YP_003930352.1| hypothetical RNA methyltransferase ybjF [Pantoea vagans C9-1] gi|308056731|gb|ADO08903.1| hypothetical RNA methyltransferase ybjF [Pantoea vagans C9-1] Length = 376 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 41/156 (26%), Positives = 74/156 (47%), Gaps = 18/156 (11%) Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271 + +L+CG G F L A + +EI+ +++ AR + + V+ + S F Sbjct: 235 SMWDLFCGVGGFGLHCATPEMELTGIEISAEAIKCARRSAEMLGLEKVQFAALDSTAFAT 294 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLC 329 + + V+PPR G+ +A + Q P ++LY SCNP ++ Sbjct: 295 GRDAVPQL---------------VLVNPPRRGMGEALCDYLSQMAPDYLLYSSCNPQTMA 339 Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 +D++ L+ + + ++ LFD FP+T H E LL R+ Sbjct: 340 QDIARLND-YEVTKVQLFDMFPHTAHFEVLTLLTRR 374 >gi|269925291|ref|YP_003321914.1| RNA methyltransferase, TrmA family [Thermobaculum terrenum ATCC BAA-798] gi|269788951|gb|ACZ41092.1| RNA methyltransferase, TrmA family [Thermobaculum terrenum ATCC BAA-798] Length = 405 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 46/183 (25%), Positives = 88/183 (48%), Gaps = 23/183 (12%) Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVE 238 +R SF Q N +++ L + ++G +++ YCG G F+ +A + + +E Sbjct: 233 FRVSATSFFQVNTLQAENLIRIALDELEPLEGKTVVDAYCGVGTFTRFIAERAELTIGIE 292 Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298 + + RYN+ ++ R E+E RL + + +D Sbjct: 293 ESPSATADFRYNMQGLKAKLIE------------GRAEKELGRLPN------NIDRLLLD 334 Query: 299 PPRSGLD-DATVGMVQAYPH-ILYISCNPDSLCRDLSILSTT--HTIERLALFDQFPYTR 354 PPR+G + +A +++ P I+Y+SC+P +L RDL +L +T + ++++ D FP T Sbjct: 335 PPRTGCEPEALETILELAPEKIVYVSCDPATLARDLKVLCSTGAYRLKKVQPVDMFPQTF 394 Query: 355 HME 357 H+E Sbjct: 395 HIE 397 >gi|328946804|gb|EGG40941.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis SK1087] Length = 456 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 42/157 (26%), Positives = 68/157 (43%), Gaps = 14/157 (8%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L++ YCG G A+ + ++I ++E A+ N N +++E Sbjct: 308 LIDAYCGVGTIGFAFAKRVKSLRGMDIIPEAIEDAKRNAKRMGFGNTLYEAGTAEEIIPR 367 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCR 330 E YR + VDPPR+GLDD + + Y ++Y+SCN +L R Sbjct: 368 WYAE------------GYRADALIVDPPRTGLDDKLLETIVRYAPEKMVYVSCNVSTLAR 415 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRKPS 367 DL LS + + + D F +T E V L ++ S Sbjct: 416 DLVKLSQVYDVHYIQSVDMFSHTARTEAVVKLSKRDS 452 >gi|187478468|ref|YP_786492.1| 23S rRNA 5-methyluridine methyltransferase [Bordetella avium 197N] gi|123514823|sp|Q2L016|RUMA_BORA1 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|115423054|emb|CAJ49585.1| 23s rRNA (uracil-5-)-methyltransferase [Bordetella avium 197N] Length = 476 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 53/195 (27%), Positives = 87/195 (44%), Gaps = 29/195 (14%) Query: 175 GRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDR 233 G + YR + FTQ N IN M+ L + D + +L+CG GNF+L LA Sbjct: 253 GLRMPYRPTD--FTQVNHAINRSMVSRALKLLEVQPTDRVADLFCGLGNFTLPLATQGRE 310 Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR-- 291 + VE +K + A + +++ + R N L ++D+ R Sbjct: 311 AVGVEGSKALTDRA--------------LEAAARHGLEGRTRFATLN-LFEVDVSWLRGL 355 Query: 292 --FKTIFVDPPRSGLDDATVGMVQAYP-----HILYISCNPDSLCRDLSIL--STTHTIE 342 F + +DPPR G + Q P I+Y+SCNP +L RD +I+ + ++ Sbjct: 356 GYFDRMLIDPPREGAHAVAQALSQLTPAERPRRIVYVSCNPATLARDAAIMVHEGGYVLK 415 Query: 343 RLALFDQFPYTRHME 357 + + FP+T H+E Sbjct: 416 AAGVINMFPHTGHVE 430 >gi|322376702|ref|ZP_08051195.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus sp. M334] gi|321282509|gb|EFX59516.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus sp. M334] Length = 451 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 45/155 (29%), Positives = 76/155 (49%), Gaps = 15/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ Y G G L +A+ V VE+ +VE + N N+++N V +++ A Sbjct: 308 VIDAYSGIGTIGLSVAKLVKEVYGVEVIPEAVENSEKNAQLNNISNAHYVCDTAE---NA 364 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCR 330 M+ + LKD + I VDPPR GL ++ + I YISCN ++ R Sbjct: 365 MK-----SWLKD----GIQPSLILVDPPRKGLTESFIKASSQTGADRIAYISCNVATMAR 415 Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364 D+ + + ++++ D FP T H+EC LLV+ Sbjct: 416 DIKLYRELGYELKKVQPVDLFPQTHHVECVALLVK 450 >gi|218699235|ref|YP_002406864.1| 23S rRNA methyluridine methyltransferase [Escherichia coli IAI39] gi|226725403|sp|B7NPF5|RUMB_ECO7I RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName: Full=23S rRNA(M-5-U747)-methyltransferase gi|218369221|emb|CAR16976.1| 23S rRNA m(5)U747 methyltransferase [Escherichia coli IAI39] Length = 375 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 43/155 (27%), Positives = 72/155 (46%), Gaps = 18/155 (11%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + +L+CG G F L A ++ +EIA ++ A+ + A + ++ + S +F A Sbjct: 237 MWDLFCGVGGFGLHCATPDMQLTGIEIAPEAIACAKQSAAELGLTRLQFQALDSTQFASA 296 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCR 330 E + V+PPR G+ + A I+Y SCN ++ + Sbjct: 297 QGEVPEL---------------VLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAK 341 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 D+ L + IER+ LFD FP+T H E LLV++ Sbjct: 342 DIRELPG-YRIERVQLFDMFPHTAHYEVLTLLVKQ 375 >gi|194433128|ref|ZP_03065410.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Shigella dysenteriae 1012] gi|194418625|gb|EDX34712.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Shigella dysenteriae 1012] gi|320177807|gb|EFW52793.1| 23S rRNA methyluridine methyltransferase [Shigella boydii ATCC 9905] gi|332088882|gb|EGI93994.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Shigella boydii 5216-82] gi|332091027|gb|EGI96117.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Shigella dysenteriae 155-74] Length = 375 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 43/155 (27%), Positives = 72/155 (46%), Gaps = 18/155 (11%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + +L+CG G F L A ++ +EIA ++ A+ + A + ++ + S +F A Sbjct: 237 MWDLFCGVGGFGLHCATPDMQLTGIEIAPEAIACAKQSAAELGLTRLQFQALDSTQFATA 296 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCR 330 E + V+PPR G+ + A I+Y SCN ++ + Sbjct: 297 QGEVPEL---------------VLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAK 341 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 D+ L + IER+ LFD FP+T H E LLV++ Sbjct: 342 DIRELPG-YRIERVQLFDMFPHTAHYEVMTLLVKQ 375 >gi|94994593|ref|YP_602691.1| 23S rRNA m(5)U 1939 methyltransferase [Streptococcus pyogenes MGAS10750] gi|94548101|gb|ABF38147.1| 23S rRNA m(5)U 1939 methyltransferase [Streptococcus pyogenes MGAS10750] gi|332001949|gb|AED99120.1| 23S rRNA m(5)U 1939 methyltransferase [Streptococcus pyogenes] Length = 463 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 47/184 (25%), Positives = 83/184 (45%), Gaps = 16/184 (8%) Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 SF Q N + + + +A + + D+ ++ Y G G L A+ V VE+ + +V Sbjct: 291 SFYQVNTIMAEKLYQTAIAFSDLSKDDIVIDAYSGIGTIGLSFAKTVKAVYGVEVIEAAV 350 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 A+ N A N + N + +++ ++ + I VDPPR GL Sbjct: 351 RDAQQNAALNGITNAYFIADTAEHAMATWAKD------------GIKPSVILVDPPRKGL 398 Query: 305 DDATV-GMVQAYPH-ILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVL 361 ++ + V P I Y+SCNP ++ RD+ + + ++ D FP T H+EC L Sbjct: 399 TESFIQASVAMGPQKITYVSCNPATMARDIKRYQELGYKLTKVQPVDLFPQTHHVECVSL 458 Query: 362 LVRK 365 L ++ Sbjct: 459 LEKR 462 >gi|302673836|ref|XP_003026604.1| hypothetical protein SCHCODRAFT_62068 [Schizophyllum commune H4-8] gi|300100287|gb|EFI91701.1| hypothetical protein SCHCODRAFT_62068 [Schizophyllum commune H4-8] Length = 425 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 52/201 (25%), Positives = 91/201 (45%), Gaps = 27/201 (13%) Query: 179 IYRQIENSFTQPNAGINVHMLEWV-------LAATKGIQGDLLELYCGNGNFSLVLARHF 231 I+ +SF Q N + + +V ++T + L++ YCG G F++ LA HF Sbjct: 231 IFEYPAHSFFQNNNAVLTPLTTYVRDALIPESSSTPSLLTHLVDTYCGAGLFAIALAPHF 290 Query: 232 DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291 V +E++ S+++A N N + + K +A F+ +KD Sbjct: 291 ATVAGIELSAESIKSATRNAELNSLP-------ADKCTFRAGDAADIFSAVKDFPAER-- 341 Query: 292 FKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCRDLS--------ILSTTHTI 341 + +DPPR G D+ + +VQ P ++Y+SCN + RD+ + + + Sbjct: 342 -TAVVIDPPRKGCDEPFLRQLVQFRPAAVVYVSCNVHTQARDVGWVLREMEKVEGKRYRV 400 Query: 342 ERLALFDQFPYTRHMECGVLL 362 E + FD FP T H+E +L Sbjct: 401 ESVRGFDLFPQTAHVESVAVL 421 >gi|215485990|ref|YP_002328421.1| 23S rRNA methyluridine methyltransferase [Escherichia coli O127:H6 str. E2348/69] gi|312969074|ref|ZP_07783281.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli 2362-75] gi|254766925|sp|B7UMV1|RUMB_ECO27 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName: Full=23S rRNA(M-5-U747)-methyltransferase gi|215264062|emb|CAS08404.1| 23S rRNA m(5)U747 methyltransferase [Escherichia coli O127:H6 str. E2348/69] gi|312286476|gb|EFR14389.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli 2362-75] gi|323190681|gb|EFZ75950.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli RN587/1] Length = 375 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 43/155 (27%), Positives = 72/155 (46%), Gaps = 18/155 (11%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + +L+CG G F L A ++ +EIA ++ A+ + A + ++ + S +F A Sbjct: 237 MWDLFCGVGGFGLHCATPDMQLTGIEIAPEAIACAKQSAAELGLTRLQFQALDSTQFASA 296 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCR 330 E + V+PPR G+ + A I+Y SCN ++ + Sbjct: 297 QGEVPEL---------------VLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAK 341 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 D+ L + IER+ LFD FP+T H E LLV++ Sbjct: 342 DIRELPG-YRIERVQLFDMFPHTAHYEVLTLLVKQ 375 >gi|194428177|ref|ZP_03060720.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli B171] gi|194413737|gb|EDX30016.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli B171] gi|323159681|gb|EFZ45660.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli E128010] Length = 375 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 43/155 (27%), Positives = 72/155 (46%), Gaps = 18/155 (11%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + +L+CG G F L A ++ +EIA ++ A+ + A + ++ + S +F A Sbjct: 237 MWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATA 296 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCR 330 E + V+PPR G+ + A I+Y SCN ++ + Sbjct: 297 QGEVPEL---------------VLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAK 341 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 D+ L + IER+ LFD FP+T H E LLV++ Sbjct: 342 DIRELPG-YRIERVQLFDMFPHTAHYEVLTLLVKQ 375 >gi|331266416|ref|YP_004326046.1| SAM-dependent methyltransferase related to tRNA (uracil-5-)-methyltransferase [Streptococcus oralis Uo5] gi|326683088|emb|CBZ00705.1| SAM-dependent methyltransferase related to tRNA (uracil-5-)-methyltransferase [Streptococcus oralis Uo5] Length = 452 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 43/149 (28%), Positives = 72/149 (48%), Gaps = 15/149 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ Y G G L +A+H V VE+ +VE ++ N N ++N V +++ A Sbjct: 308 VIDAYSGIGTIGLSVAKHVKEVYGVEVIPEAVENSQKNAELNGISNAHYVCDTAE---NA 364 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV--GMVQAYPHILYISCNPDSLCR 330 M+ N LK+ + I VDPPR GL ++ + I YISCN ++ R Sbjct: 365 MK-----NWLKE----GIQPTVILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMAR 415 Query: 331 DLSILST-THTIERLALFDQFPYTRHMEC 358 D+ + + + ++ D FP T H+EC Sbjct: 416 DIKLYQELGYELRKVQPVDLFPQTHHVEC 444 >gi|56807774|ref|ZP_00365630.1| COG2265: SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Streptococcus pyogenes M49 591] gi|209559589|ref|YP_002286061.1| Putative RNA methyltransferase [Streptococcus pyogenes NZ131] gi|209540790|gb|ACI61366.1| Putative RNA methyltransferase [Streptococcus pyogenes NZ131] Length = 452 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 47/184 (25%), Positives = 83/184 (45%), Gaps = 16/184 (8%) Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 SF Q N + + + +A + + D+ ++ Y G G L A+ V VE+ + +V Sbjct: 280 SFYQVNTIMAEKLYQTAIAFSDLSKDDIVIDAYSGIGTIGLSFAKTVKAVYGVEVIEAAV 339 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 A+ N A N + N + +++ ++ + I VDPPR GL Sbjct: 340 RDAQQNAALNGITNAYFIADTAEHAMATWAKD------------GIKPSVILVDPPRKGL 387 Query: 305 DDATV-GMVQAYPH-ILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVL 361 ++ + V P I Y+SCNP ++ RD+ + + ++ D FP T H+EC L Sbjct: 388 TESFIQASVAMGPQKITYVSCNPATMARDIKRYQELGYKLTKVQPVDLFPQTHHVECVSL 447 Query: 362 LVRK 365 L ++ Sbjct: 448 LEKR 451 >gi|121602231|ref|YP_988721.1| tRNA (Uracil-5-)-methyltransferase [Bartonella bacilliformis KC583] gi|120614408|gb|ABM45009.1| tRNA (Uracil-5-)-methyltransferase [Bartonella bacilliformis KC583] Length = 417 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 50/161 (31%), Positives = 84/161 (52%), Gaps = 21/161 (13%) Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI--AANHVNNVKIVRMSSKEFTQA 272 +L+ G G F+L +A+ + V AVE + AA N+ AA +K V ++ Sbjct: 270 DLFSGVGTFALRMAKKMN-VHAVE----NNGAALTNLDRAARFAKGLKTVICEKRDL--- 321 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRD 331 +RR L+ RF ++ DPPR+G ++ + + A P ++ +SCNP + RD Sbjct: 322 LRRPLSTEELE-------RFDSVVFDPPRAGAEEQVSELAKTAIPRVVAVSCNPVTFARD 374 Query: 332 LSIL-STTHTIERLALFDQFPYTRHMECGVLLVRK--PSGW 369 LSIL S + IE++ DQF ++ H+E +L ++ +GW Sbjct: 375 LSILVSGGYIIEKIIPIDQFLWSPHVEIVAILNKRKAKAGW 415 >gi|228469545|ref|ZP_04054538.1| 23S rRNA-methyltransferase RumA [Porphyromonas uenonis 60-3] gi|228308895|gb|EEK17570.1| 23S rRNA-methyltransferase RumA [Porphyromonas uenonis 60-3] Length = 493 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 58/206 (28%), Positives = 93/206 (45%), Gaps = 24/206 (11%) Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNF 223 Y++E + L YR SF Q N+ + E V + ++GD + +LY G G Sbjct: 289 YIEENM----HGLRYRIGPKSFYQTNSRQAERLYEKVREYAQ-LKGDEVVYDLYTGAGTI 343 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 + LA+ V+ +E +VE A N N + N K L Sbjct: 344 ANYLAQSCRSVIGIEYVPEAVEDAFVNRDQNGITNATFYAGDMKAI------------LT 391 Query: 284 DIDIHSY-RFKTIFVDPPRSGLDDATVGMV-QAYPH-ILYISCNPDSLCRDLSIL--STT 338 D + ++ R + DPPR+G+D V ++ +A P I+Y+SCNP + RDL++L Sbjct: 392 DDFVAAHGRPDVLVTDPPRAGMDAPVVEVILRAAPQRIVYVSCNPATQARDLALLMAEGQ 451 Query: 339 HTIERLALFDQFPYTRHMECGVLLVR 364 + + D FP+T H+E LL + Sbjct: 452 YRAVKACAVDMFPHTHHVETVALLSK 477 >gi|218548378|ref|YP_002382169.1| 23S rRNA methyluridine methyltransferase [Escherichia fergusonii ATCC 35469] gi|226725409|sp|B7LN23|RUMB_ESCF3 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName: Full=23S rRNA(M-5-U747)-methyltransferase gi|218355919|emb|CAQ88534.1| 23S rRNA m(5)U747 methyltransferase [Escherichia fergusonii ATCC 35469] Length = 375 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 43/155 (27%), Positives = 72/155 (46%), Gaps = 18/155 (11%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + +L+CG G F L A ++ +EIA ++ A+ + A + ++ + S +F Sbjct: 237 MWDLFCGVGGFGLHCATPDMQLTGIEIAPEAIACAKQSAAELGLTRLQFQALDSTQFATT 296 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCR 330 E + V+PPR G+ + A I+Y SCN ++ + Sbjct: 297 QGEVPEL---------------VLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMTK 341 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 D+ LS + IER+ LFD FP+T H E LLV++ Sbjct: 342 DIRELSG-YRIERVQLFDMFPHTAHYEVLTLLVKQ 375 >gi|183598310|ref|ZP_02959803.1| hypothetical protein PROSTU_01699 [Providencia stuartii ATCC 25827] gi|188020483|gb|EDU58523.1| hypothetical protein PROSTU_01699 [Providencia stuartii ATCC 25827] Length = 375 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 40/155 (25%), Positives = 71/155 (45%), Gaps = 18/155 (11%) Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271 L +L+CG G F L A ++ +EI+ P++ A+ + + +V+ + S +F Sbjct: 236 SLWDLFCGVGGFGLHCAEKQTQLTGIEISAPAIACAKQSAQELGLQHVEFQALDSTKFAT 295 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLC 329 A + + V+PPR G+ + +ILY SCN ++ Sbjct: 296 AKGNIPQL---------------VLVNPPRRGIGKELCEYLSTMRPNYILYSSCNAQTMA 340 Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 +D+ L + + ++ LFD FP+T H E LLV+ Sbjct: 341 KDIEQLE-GYAVSKVQLFDMFPHTAHYEVIALLVK 374 >gi|210623379|ref|ZP_03293776.1| hypothetical protein CLOHIR_01726 [Clostridium hiranonis DSM 13275] gi|210153640|gb|EEA84646.1| hypothetical protein CLOHIR_01726 [Clostridium hiranonis DSM 13275] Length = 458 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 43/155 (27%), Positives = 72/155 (46%), Gaps = 18/155 (11%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + +LY G G+ ++A +V +EI + +V AA N N ++N + + K Sbjct: 311 VFDLYSGTGSIGQLMAEKAKKVYGIEIIEEAVVAANENAKLNGLDNCEFIAGDVK----- 365 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330 + +K +D+ + I VDPPR G+ + + + I+YISCNP +L Sbjct: 366 -------DTVKSLDV---KPDLIIVDPPRPGIHKQAIKDICDFGAKEIVYISCNPKTLVD 415 Query: 331 DLS-ILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 DL + + E++ D FP T H E V L + Sbjct: 416 DLKDFIGYGYMPEKVKCMDMFPNTPHCESVVKLYK 450 >gi|145589476|ref|YP_001156073.1| RNA methyltransferase [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145047882|gb|ABP34509.1| 23S rRNA m(5)U-1939 methyltransferase [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 476 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 45/155 (29%), Positives = 70/155 (45%), Gaps = 21/155 (13%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +L+L+CG GNF+L LAR VL +E +E AN V+N + S Sbjct: 324 VLDLFCGIGNFTLPLARKAKTVLGIE----GLETLTTRAKANAVHNGLADKAS------- 372 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH--------ILYISCN 324 R F D + + +DPPR G + + + + I+Y+SCN Sbjct: 373 FMRSDLFEVTPDTIASWGKAERWLMDPPREGAMEICKALAELHEEDNLLLPQRIVYVSCN 432 Query: 325 PDSLCRDLSIL--STTHTIERLALFDQFPYTRHME 357 P +L RD IL +T++ + + FP+T H+E Sbjct: 433 PKTLARDAEILCHQAGYTLQSAGVVNMFPHTSHVE 467 >gi|315186207|gb|EFU19969.1| (Uracil-5)-methyltransferase [Spirochaeta thermophila DSM 6578] Length = 367 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 54/167 (32%), Positives = 74/167 (44%), Gaps = 24/167 (14%) Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN 258 LE V+ A G G+ +LY G G FS VLAR R VE A S+ A + Sbjct: 219 LEGVVPAGDG--GEAWDLYAGVGVFSQVLARRGWRPRLVESAVASLGYAEQALG----GG 272 Query: 259 VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYP 316 V +S++ F + R + DPPR GL Q P Sbjct: 273 AAYVGVSAERFLRGYR--------------GVVPGMVVADPPRGGLSRTVRAFFEGQGVP 318 Query: 317 HILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHME-CGVL 361 ++YISCN + RD++ ++ + + RLA FD +P T HME GVL Sbjct: 319 LLVYISCNTATFARDVAHLVWAGYRLTRLAFFDFYPQTPHMEVAGVL 365 >gi|331672398|ref|ZP_08373189.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli TA280] gi|331070593|gb|EGI41957.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli TA280] Length = 375 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 43/155 (27%), Positives = 72/155 (46%), Gaps = 18/155 (11%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + +L+CG G F L A ++ +EIA ++ A+ + A + ++ + S +F A Sbjct: 237 MWDLFCGVGGFGLHCATPDMQLTGIEIAPEAIACAKQSAAELGLTRLQFQALDSTQFATA 296 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCR 330 E + V+PPR G+ + A I+Y SCN ++ + Sbjct: 297 QGEVPEL---------------VLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAK 341 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 D+ L + IER+ LFD FP+T H E LLV++ Sbjct: 342 DIRELPG-YRIERVQLFDMFPHTAHYEVLTLLVKQ 375 >gi|325496801|gb|EGC94660.1| 23S rRNA methyluridine methyltransferase [Escherichia fergusonii ECD227] Length = 375 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 43/155 (27%), Positives = 72/155 (46%), Gaps = 18/155 (11%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + +L+CG G F L A ++ +EIA ++ A+ + A + ++ + S +F A Sbjct: 237 MWDLFCGVGGFGLHCATPDMQLTGIEIAPEAIACAKQSAAELGLTRLQFQALDSTQFATA 296 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCR 330 E + V+PPR G+ + A I+Y SCN ++ + Sbjct: 297 QGEVPEL---------------VLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAK 341 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 D+ L + IER+ LFD FP+T H E LLV++ Sbjct: 342 DIRELPG-YRIERVQLFDMFPHTAHYEVLTLLVKQ 375 >gi|222032588|emb|CAP75327.1| 23S rRNA [Escherichia coli LF82] gi|312945376|gb|ADR26203.1| 23S rRNA methyluridine methyltransferase [Escherichia coli O83:H1 str. NRG 857C] Length = 375 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 43/155 (27%), Positives = 72/155 (46%), Gaps = 18/155 (11%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + +L+CG G F L A ++ +EIA ++ A+ + A + ++ + S +F A Sbjct: 237 MWDLFCGVGGFGLHCATPDMQLTGIEIAPEAIACAKQSAAELGLTRLQFQALDSTQFATA 296 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCR 330 E + V+PPR G+ + A I+Y SCN ++ + Sbjct: 297 QGEVPEL---------------VLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAK 341 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 D+ L + IER+ LFD FP+T H E LLV++ Sbjct: 342 DIRELPG-YRIERVQLFDMFPHTAHYEVLTLLVKQ 375 >gi|91209893|ref|YP_539879.1| 23S rRNA methyluridine methyltransferase [Escherichia coli UTI89] gi|110641061|ref|YP_668791.1| 23S rRNA methyluridine methyltransferase [Escherichia coli 536] gi|117623039|ref|YP_851952.1| 23S rRNA methyluridine methyltransferase [Escherichia coli APEC O1] gi|191172086|ref|ZP_03033630.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli F11] gi|218557763|ref|YP_002390676.1| 23S rRNA methyluridine methyltransferase [Escherichia coli S88] gi|237707177|ref|ZP_04537658.1| 23S rRNA methyluridine methyltransferase [Escherichia sp. 3_2_53FAA] gi|300991847|ref|ZP_07179672.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli MS 200-1] gi|122424458|sp|Q1RE66|RUMB_ECOUT RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName: Full=23S rRNA(M-5-U747)-methyltransferase gi|122958455|sp|Q0TJI9|RUMB_ECOL5 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName: Full=23S rRNA(M-5-U747)-methyltransferase gi|143582665|sp|A1A998|RUMB_ECOK1 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName: Full=23S rRNA(M-5-U747)-methyltransferase gi|226725401|sp|B7MHG3|RUMB_ECO45 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName: Full=23S rRNA(M-5-U747)-methyltransferase gi|91071467|gb|ABE06348.1| hypothetical RNA methyltransferase YbjF [Escherichia coli UTI89] gi|110342653|gb|ABG68890.1| hypothetical RNA methyltransferase YbjF [Escherichia coli 536] gi|115512163|gb|ABJ00238.1| hypothetical RNA methyltransferase YbjF [Escherichia coli APEC O1] gi|190907613|gb|EDV67208.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli F11] gi|218364532|emb|CAR02214.1| 23S rRNA m(5)U747 methyltransferase [Escherichia coli S88] gi|226898387|gb|EEH84646.1| 23S rRNA methyluridine methyltransferase [Escherichia sp. 3_2_53FAA] gi|294492584|gb|ADE91340.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli IHE3034] gi|300305457|gb|EFJ59977.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli MS 200-1] gi|307627732|gb|ADN72036.1| 23S rRNA methyluridine methyltransferase [Escherichia coli UM146] gi|315287309|gb|EFU46720.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli MS 110-3] gi|320196646|gb|EFW71269.1| 23S rRNA methyluridine methyltransferase [Escherichia coli WV_060327] gi|323953437|gb|EGB49303.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli H252] gi|323958148|gb|EGB53857.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli H263] gi|324013021|gb|EGB82240.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli MS 60-1] Length = 375 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 43/155 (27%), Positives = 72/155 (46%), Gaps = 18/155 (11%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + +L+CG G F L A ++ +EIA ++ A+ + A + ++ + S +F A Sbjct: 237 MWDLFCGVGGFGLHCATPDMQLTGIEIAPEAIACAKQSAAELGLTRLQFQALDSTQFATA 296 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCR 330 E + V+PPR G+ + A I+Y SCN ++ + Sbjct: 297 QGEVPEL---------------VLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAK 341 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 D+ L + IER+ LFD FP+T H E LLV++ Sbjct: 342 DIRELPG-YRIERVQLFDMFPHTAHYEVLTLLVKQ 375 >gi|157156456|ref|YP_001462056.1| 23S rRNA methyluridine methyltransferase [Escherichia coli E24377A] gi|193064430|ref|ZP_03045511.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli E22] gi|193069324|ref|ZP_03050279.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli E110019] gi|218553445|ref|YP_002386358.1| 23S rRNA methyluridine methyltransferase [Escherichia coli IAI1] gi|218694333|ref|YP_002402000.1| 23S rRNA methyluridine methyltransferase [Escherichia coli 55989] gi|260843110|ref|YP_003220888.1| 23S rRNA m(5)U747 methyltransferase [Escherichia coli O103:H2 str. 12009] gi|260854151|ref|YP_003228042.1| 23S rRNA m(5)U747 methyltransferase [Escherichia coli O26:H11 str. 11368] gi|260867032|ref|YP_003233434.1| 23S rRNA m(5)U747 methyltransferase [Escherichia coli O111:H- str. 11128] gi|300817042|ref|ZP_07097261.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli MS 107-1] gi|300902392|ref|ZP_07120375.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli MS 84-1] gi|300924468|ref|ZP_07140438.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli MS 182-1] gi|301305369|ref|ZP_07211464.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli MS 124-1] gi|301325867|ref|ZP_07219300.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli MS 78-1] gi|167012637|sp|A7ZJS7|RUMB_ECO24 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName: Full=23S rRNA(M-5-U747)-methyltransferase gi|226725404|sp|B7M7D4|RUMB_ECO8A RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName: Full=23S rRNA(M-5-U747)-methyltransferase gi|254766926|sp|B7LD52|RUMB_ECO55 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName: Full=23S rRNA(M-5-U747)-methyltransferase gi|157078486|gb|ABV18194.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli E24377A] gi|192928892|gb|EDV82505.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli E22] gi|192957277|gb|EDV87725.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli E110019] gi|218351065|emb|CAU96769.1| 23S rRNA m(5)U747 methyltransferase [Escherichia coli 55989] gi|218360213|emb|CAQ97763.1| 23S rRNA m(5)U747 methyltransferase [Escherichia coli IAI1] gi|257752800|dbj|BAI24302.1| 23S rRNA m(5)U747 methyltransferase [Escherichia coli O26:H11 str. 11368] gi|257758257|dbj|BAI29754.1| 23S rRNA m(5)U747 methyltransferase [Escherichia coli O103:H2 str. 12009] gi|257763388|dbj|BAI34883.1| 23S rRNA m(5)U747 methyltransferase [Escherichia coli O111:H- str. 11128] gi|300405539|gb|EFJ89077.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli MS 84-1] gi|300419353|gb|EFK02664.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli MS 182-1] gi|300530394|gb|EFK51456.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli MS 107-1] gi|300839387|gb|EFK67147.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli MS 124-1] gi|300847381|gb|EFK75141.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli MS 78-1] gi|315257895|gb|EFU37863.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli MS 85-1] gi|320199094|gb|EFW73691.1| 23S rRNA methyluridine methyltransferase [Escherichia coli EC4100B] gi|323155767|gb|EFZ41936.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli EPECa14] gi|323175519|gb|EFZ61114.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli 1180] gi|323185177|gb|EFZ70542.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli 1357] gi|323947117|gb|EGB43128.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli H120] Length = 375 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 43/155 (27%), Positives = 72/155 (46%), Gaps = 18/155 (11%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + +L+CG G F L A ++ +EIA ++ A+ + A + ++ + S +F A Sbjct: 237 MWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATA 296 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCR 330 E + V+PPR G+ + A I+Y SCN ++ + Sbjct: 297 QGEVPEL---------------VLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAK 341 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 D+ L + IER+ LFD FP+T H E LLV++ Sbjct: 342 DIRELPG-YRIERVQLFDMFPHTAHYEVLTLLVKQ 375 >gi|300935050|ref|ZP_07150082.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli MS 21-1] gi|281177994|dbj|BAI54324.1| conserved hypothetical protein [Escherichia coli SE15] gi|300459713|gb|EFK23206.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli MS 21-1] Length = 375 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 43/155 (27%), Positives = 72/155 (46%), Gaps = 18/155 (11%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + +L+CG G F L A ++ +EIA ++ A+ + A + ++ + S +F A Sbjct: 237 MWDLFCGVGGFGLHCATPDMQLTGIEIAPEAIACAKQSAAELGLTRLQFQALDSTQFATA 296 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCR 330 E + V+PPR G+ + A I+Y SCN ++ + Sbjct: 297 QGEVPEL---------------VLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAK 341 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 D+ L + IER+ LFD FP+T H E LLV++ Sbjct: 342 DIRELPG-YRIERVQLFDMFPHTAHYEVLTLLVKQ 375 >gi|123470775|ref|XP_001318591.1| hypothetical protein [Trichomonas vaginalis G3] gi|121901354|gb|EAY06368.1| hypothetical protein TVAG_151750 [Trichomonas vaginalis G3] Length = 534 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 43/167 (25%), Positives = 78/167 (46%), Gaps = 25/167 (14%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L+++ CG G L +A+ +V+ ++I K ++E A+ N N + N + + +++ Sbjct: 379 LIDVCCGTGVIGLSMAKKAKKVIGIDIEKDAIEDAKKNATKNKIKNAEFIAAPAQDVLPG 438 Query: 273 M--RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA---YPHILYISCNPDS 327 + + E E +R+ + VDPPR GL ++ ++YISCNP+S Sbjct: 439 ILDQCEAEGSRV-----------VVIVDPPRDGLHKTAAKAIRECKLLKRVVYISCNPES 487 Query: 328 LCRDLSIL-------STTHTIERLALF--DQFPYTRHMECGVLLVRK 365 L RD T + + F D FP+T +E +L+ R+ Sbjct: 488 LVRDSKKFLFAENNNFATQPFQPVEWFGVDLFPHTDRLELVMLMQRE 534 >gi|227534726|ref|ZP_03964775.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227187482|gb|EEI67549.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 455 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 54/217 (24%), Positives = 91/217 (41%), Gaps = 27/217 (12%) Query: 155 ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLE--WVLAATK---GI 209 ++++ Y+ E T+ GRT ++ +F Q +N E + LAA G Sbjct: 258 GKESRLLAGLPYIQE--TLLGRT--FQLSPQAFLQ----LNPKQTETLYTLAAKALDLGP 309 Query: 210 QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269 L++ YCG G + LA+ + ++ + A N AN + N +++ Sbjct: 310 HDTLIDAYCGIGTVGISLAKGNQPIYGMDTIAEGIADAEANAKANGLTNAHYSVGKAEDI 369 Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDS 327 +E + + VDPPR+GL+ A + + P +YISCNP + Sbjct: 370 FPKWVQE------------GMKPDAVIVDPPRAGLERAFIDALLELDPPKFVYISCNPST 417 Query: 328 LCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 L RDL L+ + ++ + D FP T E V R Sbjct: 418 LARDLVFLTKRYKVDWIQSIDMFPQTARCEAVVKFTR 454 >gi|193669328|ref|XP_001944973.1| PREDICTED: tRNA (uracil-5-)-methyltransferase homolog A-like [Acyrthosiphon pisum] Length = 650 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 68/285 (23%), Positives = 125/285 (43%), Gaps = 41/285 (14%) Query: 93 TIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLI 152 +++ E L+ + + + + ++ LI + A C + D+L+ +K + + Sbjct: 379 SLKTEQLMLICVVHTENMEESALNSLKQLILSYFTEGAGAVCKV---DSLYFQKAKKRAA 435 Query: 153 GRANKTKICL--DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGI- 209 G N + L + Y+ E + + L R SF Q IN E + A K + Sbjct: 436 GEGNSFPLELLHGQGYIVEEV----KGLKLRISPESFFQ----INTAASEILFDAAKDLA 487 Query: 210 ----QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265 Q +L++ CG+G L +A+ +V+ VEI + +V A+ N N + N Sbjct: 488 SINSQTTVLDVCCGSGTIGLSIAKDCAQVIGVEIQEEAVNMAKLNATENGITNAIFFAGK 547 Query: 266 SKEFTQAMRREREFNRLKDI-DIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH---ILYI 321 ++E + +REF ++ D+ VDPPR+GL + + +++ H ++Y+ Sbjct: 548 AEE----VMNKREFQNPENANDV------VAIVDPPRAGLHNKAILLLRRMTHLKRLVYM 597 Query: 322 SCNPDSLCRDLSILSTTHT-IERLALF--------DQFPYTRHME 357 SCNP ++ LS + ++ A F D FP T H E Sbjct: 598 SCNPKGAMQNFLSLSMAESKTKQGAPFVPVKAVPVDMFPQTPHCE 642 >gi|24112229|ref|NP_706739.1| 23S rRNA methyluridine methyltransferase [Shigella flexneri 2a str. 301] gi|30062341|ref|NP_836512.1| 23S rRNA methyluridine methyltransferase [Shigella flexneri 2a str. 2457T] gi|110804856|ref|YP_688376.1| 23S rRNA methyluridine methyltransferase [Shigella flexneri 5 str. 8401] gi|50401545|sp|Q83S14|RUMB_SHIFL RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName: Full=23S rRNA(M-5-U747)-methyltransferase gi|123048499|sp|Q0T8K2|RUMB_SHIF8 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName: Full=23S rRNA(M-5-U747)-methyltransferase gi|24051076|gb|AAN42446.1| putative enzyme [Shigella flexneri 2a str. 301] gi|30040586|gb|AAP16318.1| putative enzyme [Shigella flexneri 2a str. 2457T] gi|110614404|gb|ABF03071.1| putative enzyme [Shigella flexneri 5 str. 8401] gi|281600182|gb|ADA73166.1| 23S rRNA (uracil-5-)-methyltransferase [Shigella flexneri 2002017] gi|313650234|gb|EFS14646.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Shigella flexneri 2a str. 2457T] gi|332759770|gb|EGJ90073.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Shigella flexneri 4343-70] gi|332760447|gb|EGJ90736.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Shigella flexneri 2747-71] gi|332763075|gb|EGJ93320.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Shigella flexneri K-671] gi|332768030|gb|EGJ98216.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Shigella flexneri 2930-71] gi|333006661|gb|EGK26160.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Shigella flexneri VA-6] gi|333006961|gb|EGK26456.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Shigella flexneri K-218] gi|333008832|gb|EGK28292.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Shigella flexneri K-272] gi|333020141|gb|EGK39411.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Shigella flexneri K-227] gi|333020973|gb|EGK40231.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Shigella flexneri K-304] Length = 375 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 43/155 (27%), Positives = 72/155 (46%), Gaps = 18/155 (11%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + +L+CG G F L A ++ +EIA ++ A+ + A + ++ + S +F A Sbjct: 237 MWDLFCGVGGFGLHCATPDMQLTGIEIAPEAIACAKQSAAELGLTRLQFQALDSTQFATA 296 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCR 330 E + V+PPR G+ + A I+Y SCN ++ + Sbjct: 297 QGEVPEL---------------VLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAK 341 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 D+ L + IER+ LFD FP+T H E LLV++ Sbjct: 342 DIRELPG-YRIERVQLFDMFPHTAHYEVLTLLVKQ 375 >gi|237738336|ref|ZP_04568817.1| tRNA (uracil-5-)-methyltransferase [Fusobacterium mortiferum ATCC 9817] gi|229420216|gb|EEO35263.1| tRNA (uracil-5-)-methyltransferase [Fusobacterium mortiferum ATCC 9817] Length = 450 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 35/149 (23%), Positives = 70/149 (46%), Gaps = 15/149 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ Y G G +++L++ ++V A+E+ + + N + N++ + + ++ Sbjct: 308 IVDAYSGTGTIAMMLSKKAEKVYAIELVESATLDGMKTAGENGIENIEFINGAVED---- 363 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV--GMVQAYPHILYISCNPDSLCR 330 ++ ++ R I DPPR G+++ ++ I+YISCNP + R Sbjct: 364 --------KMLELINAGKRVDAIIFDPPRKGIEEKSLIKTAESGIKEIVYISCNPSTFAR 415 Query: 331 DLSILS-TTHTIERLALFDQFPYTRHMEC 358 D ILS + I+ + D FP T H E Sbjct: 416 DAEILSRLGYKIDEVQPVDMFPGTSHTEV 444 >gi|331656932|ref|ZP_08357894.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli TA206] gi|331055180|gb|EGI27189.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli TA206] Length = 375 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 43/155 (27%), Positives = 72/155 (46%), Gaps = 18/155 (11%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + +L+CG G F L A ++ +EIA ++ A+ + A + ++ + S +F A Sbjct: 237 MWDLFCGVGGFGLHCATPDMQLTGIEIAPEAIACAKQSAAELGLTRLQFQALDSTQFATA 296 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCR 330 E + V+PPR G+ + A I+Y SCN ++ + Sbjct: 297 QGEVPEL---------------VLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAK 341 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 D+ L + IER+ LFD FP+T H E LLV++ Sbjct: 342 DIRELPG-YRIERVQLFDMFPHTAHYEVLTLLVKQ 375 >gi|332968888|gb|EGK07935.1| 23S rRNA (uracil-5-)-methyltransferase [Kingella kingae ATCC 23330] Length = 433 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 40/149 (26%), Positives = 72/149 (48%), Gaps = 15/149 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + +L+CG GNF+L +AR +V+ +E A + A +N N ++N+ EF+ A Sbjct: 289 IADLFCGLGNFTLPIARSGAQVIGIEGADFLTQRATHNAQQNGLHNI--------EFSTA 340 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330 + ++ + F + +DPPR+G + Y I+Y+SCNP + R Sbjct: 341 DLFDTTPQTIEQLGY----FDKMLLDPPRAGAYAVVQALHAPYLPKRIVYVSCNPATFAR 396 Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMEC 358 D ++L + + + FP+T H+E Sbjct: 397 DAAVLVGKGYRFSAAGIMNLFPHTAHVEA 425 >gi|33592796|ref|NP_880440.1| 23S rRNA 5-methyluridine methyltransferase [Bordetella pertussis Tohama I] gi|50401525|sp|Q7VXM6|RUMA_BORPE RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|33572444|emb|CAE42012.1| conserved hypothetical protein [Bordetella pertussis Tohama I] gi|332382209|gb|AEE67056.1| 23S rRNA 5-methyluridine methyltransferase [Bordetella pertussis CS] Length = 466 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 67/261 (25%), Positives = 108/261 (41%), Gaps = 38/261 (14%) Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDE---R 170 D+ IV ++ H L +R A H ++ +Q + T L+R++ D Sbjct: 190 GDETIVLVLRHLLPLTDGDIAVLRAFAAEHGVQWWLQ--SKGPDTVHPLEREHADALAYT 247 Query: 171 LTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATK-GIQGDLLELYCGNGNFSLVLAR 229 L G + YR + FTQ N IN M+ L Q + +L+CG GNF+L LA Sbjct: 248 LPEFGLRMPYRPTD--FTQVNHAINRAMVSRALKLLDVQPQDRVADLFCGLGNFTLPLAT 305 Query: 230 HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK--DIDI 287 + VE +K + A + AA H + F L ++D+ Sbjct: 306 QGREAVGVEGSKALTDRA-HEAAARH----------------GLGERTRFATLNLFEVDV 348 Query: 288 HSYR----FKTIFVDPPRSGLDDATVGMVQAYP-----HILYISCNPDSLCRDLSIL--S 336 R F + +DPPR G + P I+Y+SC+P +L RD +I+ Sbjct: 349 QWLRGLGYFDRMLIDPPREGAQAVAQALSLLAPGERPRRIVYVSCSPGTLARDAAIMVHE 408 Query: 337 TTHTIERLALFDQFPYTRHME 357 + + + + FP+T H+E Sbjct: 409 GGYALRSAGVINMFPHTGHVE 429 >gi|172036253|ref|YP_001802754.1| putative 23S rRNA methyltransferase/RumA [Cyanothece sp. ATCC 51142] gi|171697707|gb|ACB50688.1| putative 23S rRNA methyltransferase/RumA [Cyanothece sp. ATCC 51142] Length = 455 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 51/157 (32%), Positives = 80/157 (50%), Gaps = 20/157 (12%) Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271 +L++ YCG G F+L LA+ + + +E K ++E + N N +NNVK + + ++ Sbjct: 311 NLVDAYCGVGTFTLPLAKKVAQAVGIESNKNAIEQGKNNADMNGINNVKFYQGTVEKILP 370 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLC 329 + D DI I +DPPR G D + ++ + P I+YISC P +L Sbjct: 371 FLNL--------DPDI-------IVLDPPRKGCDRNVIHTLKEISPPIIIYISCQPSTLA 415 Query: 330 RDLSILSTT--HTIERLALFDQFPYTRHMECGVLLVR 364 RDL L +T+E + D FP T H+E V L+R Sbjct: 416 RDLEKLCQQDLYTLEWIQPIDFFPQTPHVE-SVALIR 451 >gi|328466504|gb|EGF37647.1| putative RNA methyltransferase [Listeria monocytogenes 1816] Length = 460 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 38/126 (30%), Positives = 62/126 (49%), Gaps = 14/126 (11%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G+ SL LA+ V VEI +++ AR N N + N ++E A Sbjct: 310 VIDAYCGIGSISLCLAKKAKHVYGVEIVDQAIQDARANAELNELANTTFETGKAEEVIPA 369 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330 + + D+ + VDPPR G D+ + + A ++Y+SCNP +L R Sbjct: 370 WYKA---GIVADV---------LVVDPPRKGCDEKLLETILAMKPKKVVYVSCNPGTLAR 417 Query: 331 DLSILS 336 D+ IL+ Sbjct: 418 DMKILT 423 >gi|331662271|ref|ZP_08363194.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli TA143] gi|331060693|gb|EGI32657.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli TA143] Length = 375 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 43/155 (27%), Positives = 72/155 (46%), Gaps = 18/155 (11%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + +L+CG G F L A ++ +EIA ++ A+ + A + ++ + S +F A Sbjct: 237 MWDLFCGVGGFGLHCATPDMQLTGIEIAPEAIACAKQSAAELGLTRLQFQALDSTQFATA 296 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCR 330 E + V+PPR G+ + A I+Y SCN ++ + Sbjct: 297 QGEVPEL---------------VLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAK 341 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 D+ L + IER+ LFD FP+T H E LLV++ Sbjct: 342 DIRELPG-YRIERVQLFDMFPHTAHYEVLTLLVKQ 375 >gi|238020378|ref|ZP_04600804.1| hypothetical protein GCWU000324_00258 [Kingella oralis ATCC 51147] gi|237867358|gb|EEP68364.1| hypothetical protein GCWU000324_00258 [Kingella oralis ATCC 51147] Length = 437 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 44/148 (29%), Positives = 70/148 (47%), Gaps = 15/148 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + +L+CG GNF+L LA+ V+ +E + + A N AN + N + +S + Sbjct: 294 IADLFCGLGNFTLPLAKRAAEVVGIEGSAALTQRAVANARANGLPNAQ---FASADL--- 347 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY-PH-ILYISCNPDSLCR 330 F + RF + +DPPR+G + Y P I+YISCNP +L R Sbjct: 348 ------FAATPETLAALGRFDKMLLDPPRAGAFAVVQALHAPYLPQRIVYISCNPATLAR 401 Query: 331 DLSIL-STTHTIERLALFDQFPYTRHME 357 D ++L S + + + FP T H+E Sbjct: 402 DAAVLASKGYRFATAGMMNLFPQTSHVE 429 >gi|269928597|ref|YP_003320918.1| RNA methyltransferase, TrmA family [Sphaerobacter thermophilus DSM 20745] gi|269787954|gb|ACZ40096.1| RNA methyltransferase, TrmA family [Sphaerobacter thermophilus DSM 20745] Length = 400 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 47/155 (30%), Positives = 80/155 (51%), Gaps = 20/155 (12%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ Y G G F+++LA RV+A+E + +V A+ N+ ++NV+ V Sbjct: 262 VVDAYAGVGTFAILLASEARRVIAIEESPSAVADAQPNLEG--ISNVEYV---------T 310 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD-ATVGMVQAYPH-ILYISCNPDSLCR 330 + ER RL+ + I +DPPR+G A +++ +P ++Y+SC+P +L R Sbjct: 311 GKVERVLPRLE------IQADAIILDPPRAGCHPRALEAVLEMHPQRLVYVSCDPSTLAR 364 Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364 DL IL + + + D FP T H+EC L R Sbjct: 365 DLRILVDGGYRLLDVTPVDMFPQTYHIECVAALER 399 >gi|218688641|ref|YP_002396853.1| 23S rRNA methyluridine methyltransferase [Escherichia coli ED1a] gi|254766927|sp|B7MQW3|RUMB_ECO81 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName: Full=23S rRNA(M-5-U747)-methyltransferase gi|218426205|emb|CAR07029.1| 23S rRNA m(5)U747 methyltransferase [Escherichia coli ED1a] gi|315299392|gb|EFU58644.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli MS 16-3] Length = 375 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 43/155 (27%), Positives = 72/155 (46%), Gaps = 18/155 (11%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + +L+CG G F L A ++ +EIA ++ A+ + A + ++ + S +F A Sbjct: 237 MWDLFCGVGGFGLHCATPDMQLTGIEIAPEAIACAKQSAAELGLTRLQFQALDSTQFATA 296 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCR 330 E + V+PPR G+ + A I+Y SCN ++ + Sbjct: 297 QGEVPEL---------------VLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAK 341 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 D+ L + IER+ LFD FP+T H E LLV++ Sbjct: 342 DIRELPG-YRIERVQLFDMFPHTAHYEVLTLLVKQ 375 >gi|220905512|ref|YP_002480824.1| (Uracil-5)-methyltransferase [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219869811|gb|ACL50146.1| (Uracil-5)-methyltransferase [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 550 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 46/148 (31%), Positives = 73/148 (49%), Gaps = 7/148 (4%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 LL+LYCG G L++A R+L +E +A +A + + S A Sbjct: 401 LLDLYCGVGAPGLLMADRCGRLLGLE-----QDAKAVALAQANAAAMGFTHCSYVAGDAA 455 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD-ATVGMVQAYPH-ILYISCNPDSLCR 330 R +R ++ + + + VDPPR+GL A +++ H ILY+SCNP +L R Sbjct: 456 QRLDRLAPAHENYWHPTETWDAVLVDPPRAGLAPRALNALLRLNAHTILYVSCNPATLAR 515 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMEC 358 D + L + + +A D FP+T H+EC Sbjct: 516 DAARLRGAYRLVEMAAVDLFPHTPHVEC 543 >gi|74311403|ref|YP_309822.1| 23S rRNA methyluridine methyltransferase [Shigella sonnei Ss046] gi|123617630|sp|Q3Z3S5|RUMB_SHISS RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName: Full=23S rRNA(M-5-U747)-methyltransferase gi|73854880|gb|AAZ87587.1| putative enzyme [Shigella sonnei Ss046] gi|323165792|gb|EFZ51578.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Shigella sonnei 53G] gi|323172174|gb|EFZ57812.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli LT-68] Length = 375 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 43/155 (27%), Positives = 72/155 (46%), Gaps = 18/155 (11%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + +L+CG G F L A ++ +EIA ++ A+ + A + ++ + S +F A Sbjct: 237 MWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATA 296 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCR 330 E + V+PPR G+ + A I+Y SCN ++ + Sbjct: 297 QGDVPEL---------------VLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAK 341 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 D+ L + IER+ LFD FP+T H E LLV++ Sbjct: 342 DIRELPG-YRIERVQLFDMFPHTAHYEVMTLLVKQ 375 >gi|237730842|ref|ZP_04561323.1| 23S rRNA(M-5-U747)-methyltransferase [Citrobacter sp. 30_2] gi|226906381|gb|EEH92299.1| 23S rRNA(M-5-U747)-methyltransferase [Citrobacter sp. 30_2] Length = 375 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 43/155 (27%), Positives = 73/155 (47%), Gaps = 18/155 (11%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + +L+CG G F L A ++ +EIA ++ A+ + + N+ + S +F A Sbjct: 237 MWDLFCGVGGFGLHCATPQMKLTGIEIAPEAITCAKQSAQELGLQNLHFQALDSTQFATA 296 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCR 330 + D+ + V+PPR G+ + A +I+Y SCN ++ + Sbjct: 297 Q------GEVPDL---------VLVNPPRRGIGKPLCDFLSRMAPRYIVYSSCNAQTMAK 341 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 D+ L + IER+ LFD FP+T H E LL R+ Sbjct: 342 DIRELPG-YRIERVQLFDMFPHTAHYEVLTLLSRQ 375 >gi|319942368|ref|ZP_08016682.1| hypothetical protein HMPREF9464_01901 [Sutterella wadsworthensis 3_1_45B] gi|319804056|gb|EFW00964.1| hypothetical protein HMPREF9464_01901 [Sutterella wadsworthensis 3_1_45B] Length = 496 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 57/210 (27%), Positives = 84/210 (40%), Gaps = 28/210 (13%) Query: 168 DERLTVAGRTLIYRQI--------ENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYC 218 D + AGR+ I ++ +F Q N + + E L A GD +L+LYC Sbjct: 289 DALVVWAGRSSIEAELMDLAFTVGPQTFLQVNTPQTLVLYEKALDAADVQSGDQILDLYC 348 Query: 219 GNGNFSLVLARHFD---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275 G G +L AR R L VE + S+ A N A N + V ++ F A Sbjct: 349 GVGTITLAAARRAGPHGRALGVERVEASIVCASENAARNSIPQAAFVAEPTETFLSAA-- 406 Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-------GMVQAYPHILYISCNPDSL 328 LK+ ++ I VDP G+ + + Y+SCNP S Sbjct: 407 ------LKEGFPDGFKPTKIIVDPAYQGMAGGAAKALADLFSLPNGPKRLAYVSCNPKSF 460 Query: 329 CRDLSILSTTH-TIERLALFDQFPYTRHME 357 RD L+ T+E ++ D FP H+E Sbjct: 461 ARDAKELAVAGLTLESISPVDLFPGAMHLE 490 >gi|307155029|ref|YP_003890413.1| RNA methyltransferase, TrmA family [Cyanothece sp. PCC 7822] gi|306985257|gb|ADN17138.1| RNA methyltransferase, TrmA family [Cyanothece sp. PCC 7822] Length = 460 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 55/214 (25%), Positives = 96/214 (44%), Gaps = 30/214 (14%) Query: 166 YVDERLTVAGRTL---IYRQIE-----NSFTQPNAGINVHMLEWVLAATKGIQGD--LLE 215 + ++ TVAGR I+ ++E +F Q N +++ + + +QG L++ Sbjct: 258 FGEQTQTVAGRPYLREIFAELEFELRPETFFQVNTEAAEALIDVIFDKLE-LQGTETLVD 316 Query: 216 LYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275 YCG G F+L LAR + +E+ S+ A+ N N ++NV + + + Sbjct: 317 AYCGIGTFTLPLARRVKQAFGIELHSSSIIQAQKNAQINGLSNVSFMTGAVETL------ 370 Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLS 333 L +D+ + +DPPR G + + P I+YISC +L RDL Sbjct: 371 ------LPLVDMTP---DLVLLDPPRKGCPPTVIDTLLKLKPPRIVYISCQVGTLARDLK 421 Query: 334 IL--STTHTIERLALFDQFPYTRHMECGVLLVRK 365 L ++ + + D FP T H+EC L ++ Sbjct: 422 QLCDKGSYHLTFVQPADFFPQTSHVECAAFLSQE 455 >gi|229918108|ref|YP_002886754.1| RNA methyltransferase, TrmA family [Exiguobacterium sp. AT1b] gi|229469537|gb|ACQ71309.1| RNA methyltransferase, TrmA family [Exiguobacterium sp. AT1b] Length = 458 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 48/182 (26%), Positives = 84/182 (46%), Gaps = 18/182 (9%) Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 +F Q N M V+ A G+ G+ +++ Y G G+ L LA + + +E+ + Sbjct: 282 AFFQLNPAQTEKMYREVVEAA-GLTGEERVIDAYAGVGSIGLWLAPYAKEIRGMEVVPEA 340 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 VE A ++ N N+V V ++ + +KD + I VDPPR+G Sbjct: 341 VEDANDHMRENGYNHVTYVEGRAEHWIPRW--------VKD----GWIPDVIVVDPPRTG 388 Query: 304 LDDATVGMV--QAYPHILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGV 360 +D + + I+Y+SCNP +L RD ++ + + + +D FP T H+E V Sbjct: 389 MDHQLINSIISSKTKRIVYVSCNPQTLARDADQLMKAGYKVNYVQPYDMFPQTSHVESVV 448 Query: 361 LL 362 + Sbjct: 449 VF 450 >gi|146085495|ref|XP_001465291.1| hypothetical protein [Leishmania infantum JPCM5] gi|134069388|emb|CAM67541.1| conserved hypothetical protein [Leishmania infantum JPCM5] Length = 603 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 54/203 (26%), Positives = 87/203 (42%), Gaps = 23/203 (11%) Query: 178 LIYRQIENSFTQPNA-GINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLA 236 L + +F Q N G+ M++ A LL+L G G L L++H RV+ Sbjct: 370 LCFELSPTAFFQVNTPGMETMMMKVAEVAELSAGTTLLDLCSGTGTIGLTLSKHVKRVIG 429 Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296 +E+ + +V AR N N + N + + ++ DI + Sbjct: 430 IELVESAVANARRNAQQNGITNTEFHCGRVEHLLPSVISGLPAEDRGDI--------VVI 481 Query: 297 VDPPRSGLDDATV----GMVQAYPHILYISCNPDSLCRDLSILSTTHT-------IERLA 345 +DPPR+G++ + GM + ++YISC +L RD L+ T E A Sbjct: 482 LDPPRAGVNSTVLRWIRGM-ETIRRVVYISCEQKALERDCPGLTKPSTKAYRGTPFEVTA 540 Query: 346 LF--DQFPYTRHMECGVLLVRKP 366 F D FP+T H+E +L R+P Sbjct: 541 AFAVDLFPHTHHVEMVAVLTRRP 563 >gi|260435757|ref|ZP_05789727.1| 23S rRNA (uracil-5-)-methyltransferase [Synechococcus sp. WH 8109] gi|260413631|gb|EEX06927.1| 23S rRNA (uracil-5-)-methyltransferase [Synechococcus sp. WH 8109] Length = 465 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 52/176 (29%), Positives = 83/176 (47%), Gaps = 23/176 (13%) Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVN 257 + +W+L G + +++ YCG G +L L++ V +E+ SVE AR N N ++ Sbjct: 307 LTDWLLVQCAGAR--VVDAYCGVGTIALPLSKAGFNVQGLELNPDSVEQARLNAMHNGLS 364 Query: 258 NVKIVRMSSKEFTQAMRREREFNRLKD-IDIHSYRFKTIFVDPPRSGLDDATV-GMVQAY 315 + R + + D + H + + +DPPR GLD V +++ Sbjct: 365 S---------------RCAFDAGDVADLLAAHLDDCQALVLDPPRRGLDRCVVDSILERP 409 Query: 316 PHIL-YISCNPDSLCRDLSIL---STTHTIERLALFDQFPYTRHMECGVLLVRKPS 367 P +L Y+SC+P + RDL L S + +E L D FP T H+E LL R S Sbjct: 410 PAVLAYLSCDPATQARDLKALLAPSGPYELEMLQPVDFFPQTTHLESLALLKRVSS 465 >gi|191166161|ref|ZP_03027995.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli B7A] gi|209918108|ref|YP_002292192.1| 23S rRNA methyluridine methyltransferase [Escherichia coli SE11] gi|293433157|ref|ZP_06661585.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli B088] gi|307311753|ref|ZP_07591393.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli W] gi|309795346|ref|ZP_07689764.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli MS 145-7] gi|226725407|sp|B6I8H9|RUMB_ECOSE RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName: Full=23S rRNA(M-5-U747)-methyltransferase gi|190903770|gb|EDV63485.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli B7A] gi|209911367|dbj|BAG76441.1| conserved hypothetical protein [Escherichia coli SE11] gi|291323976|gb|EFE63398.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli B088] gi|306908308|gb|EFN38807.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli W] gi|308120996|gb|EFO58258.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli MS 145-7] gi|315060144|gb|ADT74471.1| 23S rRNA m(5)U747 methyltransferase [Escherichia coli W] gi|323379298|gb|ADX51566.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli KO11] gi|324015943|gb|EGB85162.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli MS 117-3] Length = 375 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 43/155 (27%), Positives = 72/155 (46%), Gaps = 18/155 (11%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + +L+CG G F L A ++ +EIA ++ A+ + A + ++ + S +F A Sbjct: 237 MWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATA 296 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCR 330 E + V+PPR G+ + A I+Y SCN ++ + Sbjct: 297 QGEVPEL---------------VLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAK 341 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 D+ L + IER+ LFD FP+T H E LLV++ Sbjct: 342 DVRELPG-YRIERVQLFDMFPHTAHYEVLTLLVKQ 375 >gi|256021020|ref|ZP_05434885.1| 23S rRNA methyluridine methyltransferase [Shigella sp. D9] gi|332282247|ref|ZP_08394660.1| 23S rRNA methyluridine methyltransferase [Shigella sp. D9] gi|332104599|gb|EGJ07945.1| 23S rRNA methyluridine methyltransferase [Shigella sp. D9] Length = 375 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 43/155 (27%), Positives = 72/155 (46%), Gaps = 18/155 (11%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + +L+CG G F L A ++ +EIA ++ A+ + A + ++ + S +F A Sbjct: 237 MWDLFCGVGGFGLHCATPDMQLTGIEIAPEAIACAKQSAAELGLTRLQFQALDSTQFATA 296 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCR 330 E + V+PPR G+ + A I+Y SCN ++ + Sbjct: 297 QGEVPEL---------------VLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAK 341 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 D+ L + IER+ LFD FP+T H E LLV++ Sbjct: 342 DVRELPG-YRIERVQLFDMFPHTAHYEVLTLLVKQ 375 >gi|157160381|ref|YP_001457699.1| 23S rRNA methyluridine methyltransferase [Escherichia coli HS] gi|170020738|ref|YP_001725692.1| 23S rRNA methyluridine methyltransferase [Escherichia coli ATCC 8739] gi|300921111|ref|ZP_07137495.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli MS 115-1] gi|312970983|ref|ZP_07785162.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli 1827-70] gi|167012638|sp|A7ZYG2|RUMB_ECOHS RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName: Full=23S rRNA(M-5-U747)-methyltransferase gi|189045734|sp|B1IWR3|RUMB_ECOLC RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName: Full=23S rRNA(M-5-U747)-methyltransferase gi|157066061|gb|ABV05316.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli HS] gi|169755666|gb|ACA78365.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli ATCC 8739] gi|300411962|gb|EFJ95272.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli MS 115-1] gi|310336744|gb|EFQ01911.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli 1827-70] Length = 375 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 43/155 (27%), Positives = 72/155 (46%), Gaps = 18/155 (11%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + +L+CG G F L A ++ +EIA ++ A+ + A + ++ + S +F A Sbjct: 237 MWDLFCGVGGFGLHCATPDMQLTGIEIAPEAIACAKQSAAELGLTRLQFQALDSTQFATA 296 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCR 330 E + V+PPR G+ + A I+Y SCN ++ + Sbjct: 297 QGEVPEL---------------VLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAK 341 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 D+ L + IER+ LFD FP+T H E LLV++ Sbjct: 342 DVRELPG-YRIERVQLFDMFPHTAHYEVLTLLVKQ 375 >gi|322709830|gb|EFZ01405.1| tRNA (uracil-5-)-methyltransferase [Metarhizium anisopliae ARSEF 23] Length = 574 Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 44/162 (27%), Positives = 76/162 (46%), Gaps = 23/162 (14%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV--NNVKIVRMSSKEFT 270 L++ Y G+G F++ L+ F ++IA S+ +AR N + N + + K + + E Sbjct: 411 LIDAYSGSGLFTITLSSVFQHSTGIDIAADSIASARNNASLNGLGEDRCKFIAADAGELF 470 Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSL 328 +++ + + +DPPR G D +G ++ + ILY+SCN + Sbjct: 471 KSV-------------TYPADETVVVLDPPRKGCDADFLGQLRTFGPKRILYVSCNVHTQ 517 Query: 329 CRDLSIL------STTHTIERLALFDQFPYTRHMECGVLLVR 364 RD+ +L + IE L FD FP T H+E +L R Sbjct: 518 ARDVGVLVRGEGDGARYDIESLVGFDFFPQTGHVEGVAILNR 559 >gi|194438371|ref|ZP_03070461.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli 101-1] gi|253774111|ref|YP_003036942.1| 23S rRNA methyluridine methyltransferase [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254160974|ref|YP_003044082.1| 23S rRNA methyluridine methyltransferase [Escherichia coli B str. REL606] gi|300929332|ref|ZP_07144805.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli MS 187-1] gi|194422595|gb|EDX38592.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli 101-1] gi|242376675|emb|CAQ31387.1| 23S rRNA m[5]U747 methyltransferase [Escherichia coli BL21(DE3)] gi|253325155|gb|ACT29757.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253972875|gb|ACT38546.1| 23S rRNA m(5)U747-methyltransferase [Escherichia coli B str. REL606] gi|253977089|gb|ACT42759.1| 23S rRNA m(5)U747-methyltransferase [Escherichia coli BL21(DE3)] gi|300462678|gb|EFK26171.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli MS 187-1] gi|323962972|gb|EGB58544.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli H489] Length = 375 Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 43/155 (27%), Positives = 72/155 (46%), Gaps = 18/155 (11%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + +L+CG G F L A ++ +EIA ++ A+ + A + ++ + S +F A Sbjct: 237 MWDLFCGVGGFGLHCATPDMQLTGIEIAPEAIACAKQSAAELGLTRLQFQALDSTQFATA 296 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCR 330 E + V+PPR G+ + A I+Y SCN ++ + Sbjct: 297 QGEVPEL---------------VLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAK 341 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 D+ L + IER+ LFD FP+T H E LLV++ Sbjct: 342 DVRELPG-YRIERVQLFDMFPHTAHYEVLTLLVKQ 375 >gi|296129134|ref|YP_003636384.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Cellulomonas flavigena DSM 20109] gi|296020949|gb|ADG74185.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Cellulomonas flavigena DSM 20109] Length = 374 Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 53/183 (28%), Positives = 80/183 (43%), Gaps = 19/183 (10%) Query: 186 SFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 SF Q N + + LA A + +LYCG G F+L LAR +V+ VE + +V Sbjct: 208 SFFQTNTEVAAALYRQALAWADEAAVTSAWDLYCGVGGFALHLARAGRQVVGVEASAEAV 267 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 +A + + V + F L D+ + V+PPR GL Sbjct: 268 VSAELTARDAGLPGTRFVAGDATAFA-----------LDATDVPDL----VVVNPPRRGL 312 Query: 305 DDATVGMVQA--YPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362 + ++A P +LY SC+ SL RDL+ + + + R + D FP+T H E LL Sbjct: 313 GEPLSRWLEASGVPRVLYSSCHAGSLARDLAHMPSLRLV-RAQVLDMFPHTAHHEVLTLL 371 Query: 363 VRK 365 R Sbjct: 372 ERS 374 >gi|187730916|ref|YP_001880944.1| 23S rRNA methyluridine methyltransferase [Shigella boydii CDC 3083-94] gi|226725415|sp|B2TUM0|RUMB_SHIB3 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName: Full=23S rRNA(M-5-U747)-methyltransferase gi|187427908|gb|ACD07182.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Shigella boydii CDC 3083-94] Length = 375 Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 43/155 (27%), Positives = 72/155 (46%), Gaps = 18/155 (11%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + +L+CG G F L A ++ +EIA ++ A+ + A + ++ + S +F A Sbjct: 237 MWDLFCGVGGFGLHCATPDMQLTGIEIAPEAIACAKQSAAELGLTRLQFQALDSTQFATA 296 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCR 330 +E + V+PPR G+ + A I+Y SCN ++ + Sbjct: 297 QGEVQEL---------------VLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAK 341 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 D+ L IER+ LFD FP+T H E LLV++ Sbjct: 342 DIRELPG-FRIERVQLFDMFPHTAHYEVLTLLVKQ 375 >gi|331682368|ref|ZP_08382987.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli H299] gi|331079999|gb|EGI51178.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli H299] Length = 375 Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 43/155 (27%), Positives = 72/155 (46%), Gaps = 18/155 (11%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + +L+CG G F L A ++ +EIA ++ A+ + A + ++ + S +F A Sbjct: 237 MWDLFCGVGGFGLHCATPDMQLTGIEIAPEAIACAKQSAAELGLTRLQFQALDSTQFATA 296 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCR 330 E + V+PPR G+ + A I+Y SCN ++ + Sbjct: 297 QGEVPEL---------------VLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMVK 341 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 D+ L + IER+ LFD FP+T H E LLV++ Sbjct: 342 DIRELPG-YRIERVQLFDMFPHTAHYEVLTLLVKQ 375 >gi|317506803|ref|ZP_07964577.1| TRAM domain-containing protein [Segniliparus rugosus ATCC BAA-974] gi|316254877|gb|EFV14173.1| TRAM domain-containing protein [Segniliparus rugosus ATCC BAA-974] Length = 393 Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 46/154 (29%), Positives = 75/154 (48%), Gaps = 22/154 (14%) Query: 215 ELYCGNGNFSLVLARHFD---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271 +LY G G F+ VLA+ RV V+ A S AA ++A + +V+++ S+++ Sbjct: 258 DLYGGAGLFASVLAQAVGPTGRVFTVDSAGASSRAAVESLA--DLRHVEVLSGSTEKI-- 313 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYISCNPDSLCRD 331 L D+ R + VDPPRSG A V + I+++ C + RD Sbjct: 314 ----------LPDLP----RAQVAVVDPPRSGAGRAVVAALAGTDRIIHVGCETAAFSRD 359 Query: 332 LSI-LSTTHTIERLALFDQFPYTRHMECGVLLVR 364 + + + +T+ + +FD FP T H+EC LL R Sbjct: 360 VGLYVEHGYTVREIRVFDAFPLTHHVECFALLER 393 >gi|300775961|ref|ZP_07085820.1| 23S rRNA (uracil-5-)-methyltransferase [Chryseobacterium gleum ATCC 35910] gi|300505094|gb|EFK36233.1| 23S rRNA (uracil-5-)-methyltransferase [Chryseobacterium gleum ATCC 35910] Length = 470 Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 43/161 (26%), Positives = 80/161 (49%), Gaps = 15/161 (9%) Query: 209 IQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266 ++GD + +LY G G + +AR+ +V+ +E + +++AA + A N + N Sbjct: 321 LKGDEVVYDLYTGTGTIAQYVARNAKQVIGIESVQEAIDAAIEHAALNGLTNTTFYCGDM 380 Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYPH-ILYISCN 324 K+ FN + + + + DPPR G+ V + + P ++Y+SCN Sbjct: 381 KDI---------FN--DEFMANHPKADVLITDPPRDGMHQKVVEQILKLSPEKVVYVSCN 429 Query: 325 PDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 + RDL+++ +T+ ++ D FP T H+E LLV+K Sbjct: 430 SATQARDLALMKDHYTLVKILPVDMFPQTHHVENIALLVKK 470 >gi|300932464|ref|ZP_07147720.1| putative SAM-dependent methyltransferase [Corynebacterium resistens DSM 45100] Length = 447 Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 61/226 (26%), Positives = 104/226 (46%), Gaps = 25/226 (11%) Query: 149 IQLIG--RANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWV---L 203 ++L G R KTK + D +T A L + +F Q ++ +W+ + Sbjct: 219 VELSGNRRHRKTKPLVG----DGTITQAHGPLTWELPAQAFWQGHSAAVGFYTQWISEKV 274 Query: 204 AATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR--YNIAANHV----- 256 + KG +LY G G+ S L DRV++V+IA + A Y+ A H Sbjct: 275 PSAKGKVTTGWDLYGGAGSLSAALVDKVDRVVSVDIASEATSAGSRAYSDAKIHSVEFWD 334 Query: 257 NNVKIV--RMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA 314 +NV V R+++ E ++ R + R +D D R + +DPPR+G T+ V Sbjct: 335 SNVDRVAERVAASE-KKSKRGAPTWWRERDAD---ERLHAVVLDPPRTGAGKHTIRAVAG 390 Query: 315 -YP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHME 357 P H++++ C+P + RD+ + + I +A+ D F T H+E Sbjct: 391 RRPRHVVHVGCDPAAAARDVRRWIDAGYAISAVAIVDAFGLTHHVE 436 >gi|261337560|ref|ZP_05965444.1| putative tRNA (Uracil-5-)-methyltransferase [Bifidobacterium gallicum DSM 20093] gi|270277973|gb|EFA23827.1| putative tRNA (Uracil-5-)-methyltransferase [Bifidobacterium gallicum DSM 20093] Length = 441 Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 62/214 (28%), Positives = 96/214 (44%), Gaps = 30/214 (14%) Query: 169 ERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATK-GIQGD----LLELYCGNGNF 223 E + V GRT + N F Q + + E VL + +QG + +LY G+G F Sbjct: 236 ETIDVQGRTFTFTVDANGFWQMHRMAPQRLPEHVLYLVRLALQGKTDPVIWDLYSGSGLF 295 Query: 224 SLVLAR----------HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273 +L LA RVL+VE A +V+ AR NI A ++NV + + + Sbjct: 296 TLPLAALAGAVNGADGTGARVLSVEGAPQAVKNARLNIKAAGLSNVTALCGDVAKTLHHV 355 Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRD 331 E L D+ + +DPPR+G + A ++YI+C+P SL RD Sbjct: 356 PAE-----LAHPDV-------VVLDPPRAGAKAQVCRQIAASGAQAVVYIACDPASLARD 403 Query: 332 LSILS-TTHTIERLALFDQFPYTRHMECGVLLVR 364 + L+ + + + FD +P T H+E LL R Sbjct: 404 TATLTEEGYELRDIRAFDLYPMTHHVETVALLTR 437 >gi|118595122|ref|ZP_01552469.1| 23S rRNA (uracil-5-)-methyltransferase [Methylophilales bacterium HTCC2181] gi|118440900|gb|EAV47527.1| 23S rRNA (uracil-5-)-methyltransferase [Methylophilales bacterium HTCC2181] Length = 441 Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 69/278 (24%), Positives = 121/278 (43%), Gaps = 39/278 (14%) Query: 100 LRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTK 159 +R ++ QI+Y ++Q +V I +A E I L +K I +TK Sbjct: 183 IRDQIPQIEYASNQERHILVLRIL-----EALSENDINLLKDFQEKKG----IEFWTQTK 233 Query: 160 ICLDRDYVDERLTVAGRTLIYRQIE---------NSFTQPNAGINVHMLEWVLAATKGIQ 210 + V L+ ++++Y+ E SFTQ N IN ++ V+ Sbjct: 234 ---GYESVKPLLSSMQKSIVYKNKEFNLSFEFKPTSFTQINPFINAVLIRRVMNFLNPKP 290 Query: 211 GDLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269 +++ + +CG GNF+L +A + V+ E + VE+A N N + + EF Sbjct: 291 TEVIFDFFCGLGNFTLPIASYGSNVVGFESDEALVESANINAEKNKLQKL-------AEF 343 Query: 270 TQAMRREREFNRLKDIDIHSY-RFKTIFVDPPRSGLDDATVGMVQA-YPH-ILYISCNPD 326 + + ++ D I S R +DPPR G + + + P+ I Y+SCNP Sbjct: 344 KRV-----DLFKVDDQAITSLGRASKWLIDPPRDGALNLINSISEENKPNLICYVSCNPA 398 Query: 327 SLCRDLSILSTT--HTIERLALFDQFPYTRHMECGVLL 362 +L RD +L+ + + + + FP+T H+E L Sbjct: 399 TLARDAHVLTNEKGYKFAKAGILNMFPHTSHVESIALF 436 >gi|293414137|ref|ZP_06656786.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli B185] gi|291434195|gb|EFF07168.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli B185] Length = 375 Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 43/154 (27%), Positives = 71/154 (46%), Gaps = 18/154 (11%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + +L+CG G F L A ++ +EIA ++ A+ + A + ++ + S +F A Sbjct: 237 MWDLFCGVGGFGLHCATPDMQLTGIEIAPEAIACAKQSAAELGLTRLQFQALDSTQFATA 296 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCR 330 E + V+PPR G+ + A I+Y SCN ++ + Sbjct: 297 QGEVPEL---------------VLVNPPRRGIGKTLCDYLSTMAPRFIIYSSCNAQTMAK 341 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D+ L + IER+ LFD FP+T H E LLV+ Sbjct: 342 DIRELPG-YRIERVQLFDMFPHTAHYEVLTLLVK 374 >gi|225351373|ref|ZP_03742396.1| hypothetical protein BIFPSEUDO_02967 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225157717|gb|EEG71000.1| hypothetical protein BIFPSEUDO_02967 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 421 Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 65/209 (31%), Positives = 96/209 (45%), Gaps = 26/209 (12%) Query: 169 ERLTVAGRTLIYRQIENSFTQ-----PNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGN 222 E++ VAGR Y F Q P A N H+++ V G + L +LY G+G Sbjct: 224 EKVIVAGREFEYNVDAGGFWQMHRHAPIALTN-HVIDLVRGELDGAKSACLWDLYSGSGL 282 Query: 223 FSLVLAR---HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279 F+L LA R+L+VE K +V A+ N+ H+ NV R+ T A R Sbjct: 283 FTLPLATLTAERTRMLSVEGGKTAVRNAQRNLRHIHLGNVD-ARVGDVAKTLANVR---- 337 Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILS- 336 N L D+ + +DPPR+G + ++YI+C+P SL RD + L Sbjct: 338 NDLAKPDV-------VVLDPPRAGARAKVCRQIAEAEAKSVVYIACDPASLARDTATLVL 390 Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVRK 365 + + + FD +P T H+E V L RK Sbjct: 391 LGYELADIRAFDIYPMTHHVET-VALFRK 418 >gi|190150439|ref|YP_001968964.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|307263783|ref|ZP_07545389.1| 23S rRNA (uracil-5-)-methyltransferase rumB [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|189915570|gb|ACE61822.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|306870904|gb|EFN02642.1| 23S rRNA (uracil-5-)-methyltransferase rumB [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 391 Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 38/159 (23%), Positives = 74/159 (46%), Gaps = 23/159 (14%) Query: 215 ELYCGNGNFSLVLARHFD------RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268 +L+CG G F L A+ ++ ++EI+ ++ +A + + N+ + S + Sbjct: 247 DLFCGVGGFGLHCAKALQEKNENVQLTSIEISASAIASATKSAEQLQLKNITFASLDSAQ 306 Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPD 326 F ++ S + V+PPR G+ + P+++Y SCN Sbjct: 307 FA--------------LNEKSATPDLVIVNPPRRGIGKPLAEFLNQLGTPYLIYSSCNAR 352 Query: 327 SLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 ++ +D LS ++++++ LFD FP+T H E LV+K Sbjct: 353 TMAQDFEALSN-YSLQKVQLFDMFPHTSHYEVLTFLVKK 390 >gi|167719262|ref|ZP_02402498.1| 23S rRNA 5-methyluridine methyltransferase [Burkholderia pseudomallei DM98] gi|254179546|ref|ZP_04886145.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia pseudomallei 1655] gi|184210086|gb|EDU07129.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia pseudomallei 1655] Length = 465 Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 55/189 (29%), Positives = 81/189 (42%), Gaps = 22/189 (11%) Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 FTQ N IN ++ L +GD +L+L+CG GNF+L LAR V+ +E + Sbjct: 287 FTQVNHQINRVLVGRALRLLAPERGDRMLDLFCGIGNFTLPLARLAREVVGIEGSDALTA 346 Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG-- 303 A N N V+ F E + L+ + F VDPPR G Sbjct: 347 RALENAKENGVDG-------HTSFACRNLFEVTADDLRALGA----FDKFLVDPPREGAL 395 Query: 304 ------LDDATVGMVQAYPHILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTRH 355 + A G I+Y+SCNP +L RD +L + ++ + + FP+T H Sbjct: 396 AVSKALAEIAQSGAGPLPARIVYVSCNPSTLARDAGLLVHEAGYRLKGAGVVNMFPHTSH 455 Query: 356 MECGVLLVR 364 +E L R Sbjct: 456 VESIALFER 464 >gi|255027845|ref|ZP_05299831.1| hypothetical protein LmonocytFSL_18421 [Listeria monocytogenes FSL J2-003] Length = 319 Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 37/126 (29%), Positives = 62/126 (49%), Gaps = 14/126 (11%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G+ SL LA+ V VEI +++ AR N N + N ++E + Sbjct: 194 VIDAYCGIGSISLCLAKKAKHVYGVEIVDQAIQDARANAELNELANTTFETGKAEEVIPS 253 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330 + + D+ + VDPPR G D+ + + A ++Y+SCNP +L R Sbjct: 254 WYKA---GIVADV---------LVVDPPRKGCDEKLLETILAMKPKKVVYVSCNPGTLAR 301 Query: 331 DLSILS 336 D+ IL+ Sbjct: 302 DMKILT 307 >gi|237812554|ref|YP_002897005.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia pseudomallei MSHR346] gi|237504204|gb|ACQ96522.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia pseudomallei MSHR346] Length = 485 Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 55/189 (29%), Positives = 81/189 (42%), Gaps = 22/189 (11%) Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 FTQ N IN ++ L +GD +L+L+CG GNF+L LAR V+ +E + Sbjct: 307 FTQVNHQINRVLVGRALRLLAPERGDRMLDLFCGIGNFTLPLARLAREVVGIEGSDALTA 366 Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG-- 303 A N N V+ F E + L+ + F VDPPR G Sbjct: 367 RALENAKENGVDG-------HTSFACRNLFEVTADDLRALGA----FDKFLVDPPREGAL 415 Query: 304 ------LDDATVGMVQAYPHILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTRH 355 + A G I+Y+SCNP +L RD +L + ++ + + FP+T H Sbjct: 416 AVSKALAEIAQSGAGPLPARIVYVSCNPSTLARDAGLLVHEAGYRLKGAGVVNMFPHTSH 475 Query: 356 MECGVLLVR 364 +E L R Sbjct: 476 VESIALFER 484 >gi|218704283|ref|YP_002411802.1| 23S rRNA methyluridine methyltransferase [Escherichia coli UMN026] gi|293404163|ref|ZP_06648157.1| 23S rRNA (uracil-5-)-methyltransferase rumB [Escherichia coli FVEC1412] gi|298379946|ref|ZP_06989551.1| TrmA family RNA methyltransferase [Escherichia coli FVEC1302] gi|300901222|ref|ZP_07119324.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli MS 198-1] gi|226725406|sp|B7NAK5|RUMB_ECOLU RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName: Full=23S rRNA(M-5-U747)-methyltransferase gi|218431380|emb|CAR12258.1| 23S rRNA m(5)U747 methyltransferase [Escherichia coli UMN026] gi|291428749|gb|EFF01774.1| 23S rRNA (uracil-5-)-methyltransferase rumB [Escherichia coli FVEC1412] gi|298279644|gb|EFI21152.1| TrmA family RNA methyltransferase [Escherichia coli FVEC1302] gi|300355347|gb|EFJ71217.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli MS 198-1] Length = 375 Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 43/154 (27%), Positives = 71/154 (46%), Gaps = 18/154 (11%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + +L+CG G F L A ++ +EIA ++ A+ + A + ++ + S +F A Sbjct: 237 MWDLFCGVGGFGLHCATPDMQLTGIEIAPEAIACAKQSAAELGLTRLQFQALDSTQFATA 296 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCR 330 E + V+PPR G+ + A I+Y SCN ++ + Sbjct: 297 QGEVPEL---------------VLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAK 341 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D+ L + IER+ LFD FP+T H E LLV+ Sbjct: 342 DIRELPG-YRIERVQLFDMFPHTAHYEVLTLLVK 374 >gi|302525757|ref|ZP_07278099.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptomyces sp. AA4] gi|302434652|gb|EFL06468.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptomyces sp. AA4] Length = 396 Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 51/169 (30%), Positives = 73/169 (43%), Gaps = 26/169 (15%) Query: 200 EWVLAATKGIQGDLLELYCGNGNFSLVLARHFD---RVLAVEIAKPSVEAARYNIAANHV 256 EW A + G+ DL Y G G F+ VLA +VLA+E + +V N+A Sbjct: 247 EWADAPSGGVAWDL---YAGVGLFASVLADQVGPDGQVLAIESGRRAVSDGERNLA---- 299 Query: 257 NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP 316 + Q R L I + +DPPR G A V + A Sbjct: 300 -----------DLPQVNWRSGRVEHL--IGDAPTPVDVVVLDPPRKGAGRAVVDAIAAGE 346 Query: 317 --HILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLL 362 I+Y++C+P +L RD+ S +++ L FD FP T H+EC LL Sbjct: 347 PDRIVYVACDPAALARDVQFFSEHGYSLTDLRAFDAFPMTHHVECVALL 395 >gi|71903755|ref|YP_280558.1| tRNA (uracil-5-)-methyltransferase [Streptococcus pyogenes MGAS6180] gi|71802850|gb|AAX72203.1| tRNA (uracil-5-)-methyltransferase [Streptococcus pyogenes MGAS6180] Length = 555 Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 47/183 (25%), Positives = 82/183 (44%), Gaps = 16/183 (8%) Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 SF Q N + + + +A + + D+ ++ Y G G L A+ V VE+ + +V Sbjct: 291 SFYQVNTVMAEKLYQTAIAFSDLSKDDIVIDAYSGIGTIGLSFAKTVKAVYGVEVIEAAV 350 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 A++N A N + N V +++ ++ + I VDPPR GL Sbjct: 351 RDAQHNAALNGITNAYFVADTAEHAMATWAKD------------GIKPSVILVDPPRKGL 398 Query: 305 DDATV-GMVQAYPH-ILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVL 361 ++ + V P I Y+SCNP ++ RD+ + + ++ D FP T H+E L Sbjct: 399 TESFIQASVAMGPQKITYVSCNPATMARDIKRYQELGYKLAKVQPVDLFPQTHHVETVAL 458 Query: 362 LVR 364 L + Sbjct: 459 LSK 461 >gi|93005208|ref|YP_579645.1| 23S rRNA 5-methyluridine methyltransferase [Psychrobacter cryohalolentis K5] gi|122415956|sp|Q1QDU2|RUMA_PSYCK RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|92392886|gb|ABE74161.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Psychrobacter cryohalolentis K5] Length = 513 Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 54/190 (28%), Positives = 86/190 (45%), Gaps = 26/190 (13%) Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLAR---HFDR 233 L + I FTQ N +N M + G+ +L+L+ G GNFSL LAR Sbjct: 330 LTFEFIPTDFTQVNLSVNRQMTKLACDLLDLKAGERVLDLFSGLGNFSLPLARLVGETGS 389 Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293 V+ VE ++ A N N +NN + ++Q + + D + F Sbjct: 390 VVGVEGSEAMTARAADNARRNGINNTEF-------YSQDLTHD-----CTDKPWANQGFD 437 Query: 294 TIFVDPPRSGLDDATVGMVQAYPH-----ILYISCNPDSLCRDL-SILSTTHTIERLALF 347 + +DPPRSG + ++Q P I+Y+SCNP +L RD ++L + + + Sbjct: 438 ALLIDPPRSGAWE----IMQYLPKFNAERIVYVSCNPATLARDTKALLEQGYRLTHAGVM 493 Query: 348 DQFPYTRHME 357 D F +T H+E Sbjct: 494 DMFCHTGHVE 503 >gi|328866133|gb|EGG14519.1| hypothetical protein DFA_12295 [Dictyostelium fasciculatum] Length = 728 Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 58/200 (29%), Positives = 94/200 (47%), Gaps = 30/200 (15%) Query: 185 NSFTQPNAGIN----VHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240 N+F Q N+ +LEW A + LL++ CG G ++ + + +E+A Sbjct: 460 NAFFQVNSAATEKLYSKVLEWADCAKDTV---LLDVCCGTGTIGQCVSGNVRHIYGLELA 516 Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM--RREREF-NRLKDIDIHSYRFKTIFV 297 +V+ A N N++ NV + +++ + R F N +KD DI V Sbjct: 517 PDAVKDAIKNAQHNNITNVDYLVGKAEDTMSGLVSRIHNTFGNTVKDGDIIG------IV 570 Query: 298 DPPRSGLDDATVGMV---QAYPHILYISCNPDSLCRDLSILSTTHT----------IERL 344 DPPRSGL + + +A ++Y+SCN +SL +D + LS T T ++ + Sbjct: 571 DPPRSGLHLDVIKALRGFEAMKRLVYVSCNQNSLIQDAAKLSKTITNNMRGTPFRPVKAI 630 Query: 345 ALFDQFPYTRHMECGVLLVR 364 A FD FP+T +E VL R Sbjct: 631 A-FDLFPHTELVEVVVLFER 649 >gi|269120866|ref|YP_003309043.1| RNA methyltransferase, TrmA family [Sebaldella termitidis ATCC 33386] gi|268614744|gb|ACZ09112.1| RNA methyltransferase, TrmA family [Sebaldella termitidis ATCC 33386] Length = 456 Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 40/155 (25%), Positives = 75/155 (48%), Gaps = 15/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + +L+ G G +++++ V +E+ + +VE A N N++ N K + + F +A Sbjct: 312 IFDLFSGTGTIGQIVSKNARYVYGIELVEEAVEKANENAELNNIKNCKFI--AGDVFKKA 369 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCR 330 L++ DI R + DPPR+G+ + + + I+Y+SCNP + + Sbjct: 370 -------EELREADI---RPDIVIFDPPRAGVGQKALEKILEFDMNEIIYVSCNPKTFIQ 419 Query: 331 DLSILSTT-HTIERLALFDQFPYTRHMECGVLLVR 364 D+ IL + + + D FP T H+E LL + Sbjct: 420 DVEILKKSGFELVKSVCVDMFPNTPHVEVVSLLEK 454 >gi|26246882|ref|NP_752922.1| 23S rRNA methyluridine methyltransferase [Escherichia coli CFT073] gi|227884177|ref|ZP_04001982.1| 23S rRNA methyluridine methyltransferase [Escherichia coli 83972] gi|300993463|ref|ZP_07180405.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli MS 45-1] gi|301051213|ref|ZP_07198042.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli MS 185-1] gi|50401587|sp|Q8FJE7|RUMB_ECOL6 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName: Full=23S rRNA(M-5-U747)-methyltransferase gi|26107282|gb|AAN79465.1|AE016758_69 Hypothetical RNA methyltransferase ybjF [Escherichia coli CFT073] gi|227838929|gb|EEJ49395.1| 23S rRNA methyluridine methyltransferase [Escherichia coli 83972] gi|300297120|gb|EFJ53505.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli MS 185-1] gi|300406577|gb|EFJ90115.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli MS 45-1] gi|307552702|gb|ADN45477.1| 23S rRNA uracil-5-methyltransferase [Escherichia coli ABU 83972] gi|315292534|gb|EFU51886.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli MS 153-1] Length = 375 Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 43/155 (27%), Positives = 72/155 (46%), Gaps = 18/155 (11%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + +L+CG G F L A ++ +EIA ++ A+ + A + ++ + S +F A Sbjct: 237 MWDLFCGVGGFGLHCATPDMQLTGIEIAPEAIACAKQSAAELGLTRLQFQALDSTQFATA 296 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCR 330 E + V+PPR G+ + A I+Y SCN ++ + Sbjct: 297 QGEVPEL---------------VLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAK 341 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 D+ L + IER+ LFD FP+T H E LLV++ Sbjct: 342 DIRELPG-YRIERVQLFDMFPHTAHYEVLTLLVQQ 375 >gi|331651874|ref|ZP_08352893.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli M718] gi|331050152|gb|EGI22210.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli M718] Length = 375 Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 43/154 (27%), Positives = 71/154 (46%), Gaps = 18/154 (11%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + +L+CG G F L A ++ +EIA ++ A+ + A + ++ + S +F A Sbjct: 237 MWDLFCGVGGFGLHCATPDMQLTGIEIAPEAIACAKQSAAELGLTRLQFQALDSTQFATA 296 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCR 330 E + V+PPR G+ + A I+Y SCN ++ + Sbjct: 297 QGEVPEL---------------VLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAK 341 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D+ L + IER+ LFD FP+T H E LLV+ Sbjct: 342 DIRELPG-YRIERVQLFDMFPHTAHYEVLTLLVK 374 >gi|256832632|ref|YP_003161359.1| deoxyribonuclease/rho motif-related TRAM [Jonesia denitrificans DSM 20603] gi|256686163|gb|ACV09056.1| deoxyribonuclease/rho motif-related TRAM [Jonesia denitrificans DSM 20603] Length = 430 Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 58/210 (27%), Positives = 98/210 (46%), Gaps = 17/210 (8%) Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGD-LLELYCGNG 221 R +V E + GR YR N F Q + ++ VL A G +G +L+ YCG+G Sbjct: 229 RRFVTEIVHAYGRPYRYRVAANGFWQVHRDAPEVLVTAVLDALGDGFEGGRILDAYCGSG 288 Query: 222 NFSLVLAR---HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278 F++ LA V+A+E +V+ AR N+ +NN+ F Q + Sbjct: 289 LFTVPLAAMAGEDGEVVAIEGDARAVKDARRNV----MNNLDPDIAQKVRFHQGSVGD-V 343 Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCRDLSILS 336 L+D+ + +DPPR G + +V P ++Y++C+P +L RD +++ Sbjct: 344 LAHLQDVP----SVDAVVLDPPRVGAGAHVIDALVALSPQTMVYVACDPAALARDTALVG 399 Query: 337 T-THTIERLALFDQFPYTRHMECGVLLVRK 365 + + + FD FP T H+EC + R+ Sbjct: 400 ERGYQLTSMRAFDLFPMTHHVECVAVFHRR 429 >gi|225868865|ref|YP_002744813.1| RNA methyltransferase [Streptococcus equi subsp. zooepidemicus] gi|225702141|emb|CAW99828.1| putative RNA methyltransferase [Streptococcus equi subsp. zooepidemicus] Length = 543 Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 43/155 (27%), Positives = 69/155 (44%), Gaps = 15/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ Y G G L A+ V VE+ + +V A N A N + N V S++ Sbjct: 308 VIDAYSGIGTIGLSFAKEVKAVYGVEVIEAAVRDAEKNAALNGITNAYYVADSAE----- 362 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCR 330 N + + + I VDPPR GL ++ + A I YISCNP ++ R Sbjct: 363 -------NAMANWCQEGIKPTVIIVDPPRKGLTESFIKASAAMQPDKITYISCNPATMAR 415 Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364 D+ + ++++ D FP T H+E LL + Sbjct: 416 DIKRYEELGYKLQKVQPVDLFPMTHHVETVTLLSK 450 >gi|259489663|tpe|CBF90119.1| TPA: tRNA methyltransferase (Eurofung) [Aspergillus nidulans FGSC A4] Length = 575 Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 56/214 (26%), Positives = 96/214 (44%), Gaps = 31/214 (14%) Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD----LLELYCGN 220 +Y+D+ L + + Q NS +G ++ E L T G LL+ Y G+ Sbjct: 377 EYIDDYL-FTNKAGAFFQNNNSIL---SGFTEYIREHALTPTSDKSGTPIKYLLDAYSGS 432 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G F++ L+ F L V++A S+ +AR N AN++ N + Sbjct: 433 GLFTITLSPLFKSSLGVDVAGDSIVSARENARANNLPNTGFAAADAAVL----------- 481 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSIL--- 335 KD+ + + +DPPR G + + + AY ++Y+SCN + RD++++ Sbjct: 482 -FKDVPYPPDQ-TLLVIDPPRKGCSEDFLRQLLAYGPRRVVYVSCNVHTQARDVAVMVQG 539 Query: 336 ----STTHTIERLALFDQFPYTRHMECGVLLVRK 365 + IE + FD FP T H+E GV ++ K Sbjct: 540 DEKTGVRYNIESIRGFDFFPQTGHVE-GVAVLNK 572 >gi|332670648|ref|YP_004453656.1| deoxyribonuclease/rho motif-related TRAM [Cellulomonas fimi ATCC 484] gi|332339686|gb|AEE46269.1| deoxyribonuclease/rho motif-related TRAM [Cellulomonas fimi ATCC 484] Length = 429 Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 59/219 (26%), Positives = 96/219 (43%), Gaps = 17/219 (7%) Query: 152 IGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG 211 +GR K R V E + T YR F Q + ++ VL A + G Sbjct: 222 LGRGRTDKRPNARTSVREEVRRGDVTYTYRVAAAGFWQVHREAPGLLVGAVLDALGDVDG 281 Query: 212 DL-LELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268 + L+LY G G F+L LA V++VE +V AR N+ + NV++ Sbjct: 282 AVVLDLYAGAGLFTLPLADAVGDGEVVSVEGDARAVRDARRNV--HDRPNVEL------- 332 Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPD 326 A R +D D + +DPPR+G V V A ++Y++C+P Sbjct: 333 --HAGDVARVLTGRQDADSDVVHADAVVLDPPRTGAGRRVVDAVAALRPERVVYVACDPA 390 Query: 327 SLCRDLSILS-TTHTIERLALFDQFPYTRHMECGVLLVR 364 +L RD+++L + ++ + +D FP+T H+E + R Sbjct: 391 ALARDVALLGEAGYALDDVQGYDLFPHTHHLEAVAVFTR 429 >gi|46143326|ref|ZP_00135468.2| COG2265: SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126208584|ref|YP_001053809.1| 23S rRNA methyluridine methyltransferase [Actinobacillus pleuropneumoniae L20] gi|126097376|gb|ABN74204.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Actinobacillus pleuropneumoniae serovar 5b str. L20] Length = 391 Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 38/159 (23%), Positives = 73/159 (45%), Gaps = 23/159 (14%) Query: 215 ELYCGNGNFSLVLARHFD------RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268 +L+CG G F L A+ ++ +EI+ ++ +A + + N+ + S + Sbjct: 247 DLFCGVGGFGLHCAKALQEKNENVQLTGIEISASAIASATKSAEQLQLKNITFASLDSAQ 306 Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPD 326 F ++ S + V+PPR G+ + P+++Y SCN Sbjct: 307 FA--------------LNEKSATPDLVIVNPPRRGIGKPLAEFLNQLGTPYLIYSSCNAR 352 Query: 327 SLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 ++ +D LS ++++++ LFD FP+T H E LV+K Sbjct: 353 TMAQDFEALSN-YSLQKVQLFDMFPHTSHYEVLTFLVKK 390 >gi|326335854|ref|ZP_08202033.1| 23S rRNA (uracil-5-)-methyltransferase [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325691998|gb|EGD33958.1| 23S rRNA (uracil-5-)-methyltransferase [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 469 Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 56/214 (26%), Positives = 91/214 (42%), Gaps = 28/214 (13%) Query: 163 DRDYVDERLTVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGDLL 214 D Y E + GR I+ ++E+ SF Q N+ + + L V + G L Sbjct: 267 DTIYDQEVICYHGREFIHEEMEDLRFKINAKSFFQTNS-LQAYQLYKVTRDFAALTGKEL 325 Query: 215 --ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +LY G G + +A+ +V+ VE ++ A+ N N + NV F Sbjct: 326 VYDLYTGTGTIAQFIAKGAKKVIGVESVPEAIADAKENAHTNQIYNVDF-------FVGD 378 Query: 273 MRR--EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSL 328 M+ EF I H I DPPR G+ + + A ++Y+SCN + Sbjct: 379 MKNIFNEEF-----ITKHGTP-DVIITDPPRDGMHKDVIAQILRIAPKRVVYVSCNSATQ 432 Query: 329 CRDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362 RDL+++ + + ++ D FP T H+E LL Sbjct: 433 ARDLALMDPMYKVVKIRPVDMFPQTYHIENVALL 466 >gi|126442107|ref|YP_001059230.1| 23S rRNA 5-methyluridine methyltransferase [Burkholderia pseudomallei 668] gi|126221600|gb|ABN85106.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia pseudomallei 668] Length = 485 Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 55/189 (29%), Positives = 81/189 (42%), Gaps = 22/189 (11%) Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 FTQ N IN ++ L +GD +L+L+CG GNF+L LAR V+ +E + Sbjct: 307 FTQVNHQINRVLVGRALRLLAPERGDRVLDLFCGIGNFTLPLARLAREVVGIEGSDALTA 366 Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG-- 303 A N N V+ F E + L+ + F VDPPR G Sbjct: 367 RALENAKENGVDG-------HTSFACRNLFEVTADDLRALGA----FDKFLVDPPREGAL 415 Query: 304 ------LDDATVGMVQAYPHILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTRH 355 + A G I+Y+SCNP +L RD +L + ++ + + FP+T H Sbjct: 416 AVSKALAEIAQSGAGPLPARIVYVSCNPSTLARDAGLLVHEAGYRLKGAGVVNMFPHTSH 475 Query: 356 MECGVLLVR 364 +E L R Sbjct: 476 VESIALFER 484 >gi|242316213|ref|ZP_04815229.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia pseudomallei 1106b] gi|242139452|gb|EES25854.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia pseudomallei 1106b] Length = 485 Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 55/189 (29%), Positives = 81/189 (42%), Gaps = 22/189 (11%) Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 FTQ N IN ++ L +GD +L+L+CG GNF+L LAR V+ +E + Sbjct: 307 FTQVNHQINRVLVGRALRLLAPERGDRVLDLFCGIGNFTLPLARLAREVVGIEGSDALTA 366 Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG-- 303 A N N V+ F E + L+ + F VDPPR G Sbjct: 367 RALENAKENGVDG-------HTSFACRNLFEVTADDLRALGA----FDKFLVDPPREGAL 415 Query: 304 ------LDDATVGMVQAYPHILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTRH 355 + A G I+Y+SCNP +L RD +L + ++ + + FP+T H Sbjct: 416 AVSKALAEIAQSGAGPLPARIVYVSCNPSTLARDAGLLVHEAGYRLKGAGVVNMFPHTSH 475 Query: 356 MECGVLLVR 364 +E L R Sbjct: 476 VESIALFER 484 >gi|225870131|ref|YP_002746078.1| RNA methyltransferase [Streptococcus equi subsp. equi 4047] gi|225699535|emb|CAW93112.1| putative RNA methyltransferase [Streptococcus equi subsp. equi 4047] Length = 543 Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 43/155 (27%), Positives = 69/155 (44%), Gaps = 15/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ Y G G L A+ V VE+ + +V A N A N + N V S++ Sbjct: 308 VIDAYSGIGTIGLSFAKEVKAVYGVEVIEAAVRDAEKNAALNGITNAYYVADSAE----- 362 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCR 330 N + + + I VDPPR GL ++ + A I YISCNP ++ R Sbjct: 363 -------NAMANWCQEGIKPTVIIVDPPRKGLTESFIKASAAMQPDKITYISCNPATMAR 415 Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364 D+ + ++++ D FP T H+E LL + Sbjct: 416 DIKRYEELGYKLQKVQPVDLFPMTHHVETVALLSK 450 >gi|67639889|ref|ZP_00438718.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia mallei GB8 horse 4] gi|254199956|ref|ZP_04906322.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia mallei FMH] gi|254206289|ref|ZP_04912641.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia mallei JHU] gi|76580093|gb|ABA49568.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia pseudomallei 1710b] gi|147749552|gb|EDK56626.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia mallei FMH] gi|147753732|gb|EDK60797.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia mallei JHU] gi|238520500|gb|EEP83959.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia mallei GB8 horse 4] Length = 434 Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 55/189 (29%), Positives = 81/189 (42%), Gaps = 22/189 (11%) Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 FTQ N IN ++ L +GD +L+L+CG GNF+L LAR V+ +E + Sbjct: 256 FTQVNHQINRVLVGRALRLLAPERGDRVLDLFCGIGNFTLPLARLAREVVGIEGSDALTA 315 Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG-- 303 A N N V+ F E + L+ + F VDPPR G Sbjct: 316 RALENAKENGVDG-------HTSFACRNLFEVTADDLRALGA----FDKFLVDPPREGAL 364 Query: 304 ------LDDATVGMVQAYPHILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTRH 355 + A G I+Y+SCNP +L RD +L + ++ + + FP+T H Sbjct: 365 AVSKALAEIAQSGAGPLPARIVYVSCNPSTLARDAGLLVHEAGYRLKGAGVVNMFPHTSH 424 Query: 356 MECGVLLVR 364 +E L R Sbjct: 425 VESIALFER 433 >gi|303250139|ref|ZP_07336341.1| 23S rRNA methyluridine methyltransferase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307252750|ref|ZP_07534641.1| 23S rRNA (uracil-5-)-methyltransferase rumB [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|302651202|gb|EFL81356.1| 23S rRNA methyluridine methyltransferase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306859782|gb|EFM91804.1| 23S rRNA (uracil-5-)-methyltransferase rumB [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 391 Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 38/159 (23%), Positives = 73/159 (45%), Gaps = 23/159 (14%) Query: 215 ELYCGNGNFSLVLARHFD------RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268 +L+CG G F L A+ ++ +EI+ ++ +A + + N+ + S + Sbjct: 247 DLFCGVGGFGLHCAKALQEKNENVQLTGIEISASAIASATKSAEQLQLKNITFASLDSAQ 306 Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPD 326 F ++ S + V+PPR G+ + P+++Y SCN Sbjct: 307 FA--------------LNEKSATPDLVIVNPPRRGIGKPLAEFLNQLGTPYLIYSSCNAR 352 Query: 327 SLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 ++ +D LS ++++++ LFD FP+T H E LV+K Sbjct: 353 TMAQDFEALSN-YSLQKVQLFDMFPHTSHYEVLTFLVKK 390 >gi|126455291|ref|YP_001066497.1| 23S rRNA 5-methyluridine methyltransferase [Burkholderia pseudomallei 1106a] gi|126228933|gb|ABN92473.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia pseudomallei 1106a] Length = 465 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 55/189 (29%), Positives = 81/189 (42%), Gaps = 22/189 (11%) Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 FTQ N IN ++ L +GD +L+L+CG GNF+L LAR V+ +E + Sbjct: 287 FTQVNHQINRVLVGRALRLLAPERGDRVLDLFCGIGNFTLPLARLAREVVGIEGSDALTA 346 Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG-- 303 A N N V+ F E + L+ + F VDPPR G Sbjct: 347 RALENAKENGVDG-------HTSFACRNLFEVTADDLRALGA----FDKFLVDPPREGAL 395 Query: 304 ------LDDATVGMVQAYPHILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTRH 355 + A G I+Y+SCNP +L RD +L + ++ + + FP+T H Sbjct: 396 AVSKALAEIAQSGAGPLPARIVYVSCNPSTLARDAGLLVHEAGYRLKGAGVVNMFPHTSH 455 Query: 356 MECGVLLVR 364 +E L R Sbjct: 456 VESIALFER 464 >gi|167902391|ref|ZP_02489596.1| 23S rRNA 5-methyluridine methyltransferase [Burkholderia pseudomallei NCTC 13177] Length = 465 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 55/189 (29%), Positives = 81/189 (42%), Gaps = 22/189 (11%) Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 FTQ N IN ++ L +GD +L+L+CG GNF+L LAR V+ +E + Sbjct: 287 FTQVNHQINRVLVGRALRLLAPERGDRVLDLFCGIGNFTLPLARLAREVVGIEGSDALTA 346 Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG-- 303 A N N V+ F E + L+ + F VDPPR G Sbjct: 347 RALENAKENGVDG-------HTSFACRNLFEVTADDLRALGA----FDKFLVDPPREGAL 395 Query: 304 ------LDDATVGMVQAYPHILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTRH 355 + A G I+Y+SCNP +L RD +L + ++ + + FP+T H Sbjct: 396 AVSKALAEIAQSGAGPLPARIVYVSCNPSTLARDAGLLVHEAGYRLKGAGVVNMFPHTSH 455 Query: 356 MECGVLLVR 364 +E L R Sbjct: 456 VESIALFER 464 >gi|67515719|ref|XP_657745.1| hypothetical protein AN0141.2 [Aspergillus nidulans FGSC A4] gi|40746163|gb|EAA65319.1| hypothetical protein AN0141.2 [Aspergillus nidulans FGSC A4] Length = 529 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 56/214 (26%), Positives = 96/214 (44%), Gaps = 31/214 (14%) Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD----LLELYCGN 220 +Y+D+ L + + Q NS +G ++ E L T G LL+ Y G+ Sbjct: 331 EYIDDYL-FTNKAGAFFQNNNSIL---SGFTEYIREHALTPTSDKSGTPIKYLLDAYSGS 386 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G F++ L+ F L V++A S+ +AR N AN++ N + Sbjct: 387 GLFTITLSPLFKSSLGVDVAGDSIVSARENARANNLPNTGFAAADAAVL----------- 435 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSIL--- 335 KD+ + + +DPPR G + + + AY ++Y+SCN + RD++++ Sbjct: 436 -FKDVPYPPDQ-TLLVIDPPRKGCSEDFLRQLLAYGPRRVVYVSCNVHTQARDVAVMVQG 493 Query: 336 ----STTHTIERLALFDQFPYTRHMECGVLLVRK 365 + IE + FD FP T H+E GV ++ K Sbjct: 494 DEKTGVRYNIESIRGFDFFPQTGHVE-GVAVLNK 526 >gi|121599752|ref|YP_993159.1| 23S rRNA 5-methyluridine methyltransferase [Burkholderia mallei SAVP1] gi|251767657|ref|ZP_02268038.2| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia mallei PRL-20] gi|254197594|ref|ZP_04904016.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia pseudomallei S13] gi|254261237|ref|ZP_04952291.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia pseudomallei 1710a] gi|121228562|gb|ABM51080.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia mallei SAVP1] gi|169654335|gb|EDS87028.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia pseudomallei S13] gi|243062065|gb|EES44251.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia mallei PRL-20] gi|254219926|gb|EET09310.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia pseudomallei 1710a] Length = 485 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 55/189 (29%), Positives = 81/189 (42%), Gaps = 22/189 (11%) Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 FTQ N IN ++ L +GD +L+L+CG GNF+L LAR V+ +E + Sbjct: 307 FTQVNHQINRVLVGRALRLLAPERGDRVLDLFCGIGNFTLPLARLAREVVGIEGSDALTA 366 Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG-- 303 A N N V+ F E + L+ + F VDPPR G Sbjct: 367 RALENAKENGVDG-------HTSFACRNLFEVTADDLRALGA----FDKFLVDPPREGAL 415 Query: 304 ------LDDATVGMVQAYPHILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTRH 355 + A G I+Y+SCNP +L RD +L + ++ + + FP+T H Sbjct: 416 AVSKALAEIAQSGAGPLPARIVYVSCNPSTLARDAGLLVHEAGYRLKGAGVVNMFPHTSH 475 Query: 356 MECGVLLVR 364 +E L R Sbjct: 476 VESIALFER 484 >gi|261367469|ref|ZP_05980352.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Subdoligranulum variabile DSM 15176] gi|282570242|gb|EFB75777.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Subdoligranulum variabile DSM 15176] Length = 453 Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 52/156 (33%), Positives = 68/156 (43%), Gaps = 15/156 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 LL+LYCG G L + R+L VEI +VE A+ A R+ Sbjct: 308 LLDLYCGMGTIGLSMLPDCRRLLGVEIVPQAVEGAKATAA----------RLGLSPQRAD 357 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPHILY-ISCNPDSLCR 330 R + + I VDPPR G D AT+ +VQ P L +SCN + R Sbjct: 358 FRCQDAGAAAAQLAAEGAHPDVIVVDPPRKGCDPATLQAIVQMAPRTLVMVSCNAATAAR 417 Query: 331 DLSILSTTHTIERLAL--FDQFPYTRHMECGVLLVR 364 D L T H + + D FP TRH+EC V LV+ Sbjct: 418 DTRWL-TEHGYRAMEVQPVDLFPRTRHVECVVKLVQ 452 >gi|255722035|ref|XP_002545952.1| hypothetical protein CTRG_00733 [Candida tropicalis MYA-3404] gi|240136441|gb|EER35994.1| hypothetical protein CTRG_00733 [Candida tropicalis MYA-3404] Length = 551 Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 49/189 (25%), Positives = 93/189 (49%), Gaps = 21/189 (11%) Query: 185 NSFTQPNAGINVHMLEWVL--AATKGIQGD-LLELYCGNGNFSLVLARHFD---RVLAVE 238 N F Q N I ++L+++ KG D +++ YCG G F + L+ F ++ +E Sbjct: 362 NCFFQNNNSILPNVLDYITYHINLKGKPIDNIIDTYCGVGFFGIALSNSFQENTKIFGIE 421 Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298 I+ S++ A +N+ N++N KI + +M + EF + S + + +D Sbjct: 422 ISNISIKYANHNVKINNLNKDKIKFIQGD--ASSMFKNEEFIKSG----ISGKNSVVIID 475 Query: 299 PPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCRDLSIL-------STTHTIERLALFDQ 349 P R G +++ + +++ P I+Y+SCN + RDL+ + + + + FD Sbjct: 476 PSRKGSNESFMKQLLEFEPEIIIYVSCNVFTQARDLATFDKLQQNSNVKYKVRDIMGFDF 535 Query: 350 FPYTRHMEC 358 FP T+H+E Sbjct: 536 FPQTKHVES 544 >gi|53719142|ref|YP_108128.1| 23S rRNA 5-methyluridine methyltransferase [Burkholderia pseudomallei K96243] gi|53723555|ref|YP_103010.1| 23S rRNA 5-methyluridine methyltransferase [Burkholderia mallei ATCC 23344] gi|124385031|ref|YP_001026066.1| 23S rRNA 5-methyluridine methyltransferase [Burkholderia mallei NCTC 10229] gi|126448076|ref|YP_001080666.1| 23S rRNA 5-methyluridine methyltransferase [Burkholderia mallei NCTC 10247] gi|162210058|ref|YP_333755.2| 23S rRNA 5-methyluridine methyltransferase [Burkholderia pseudomallei 1710b] gi|167738259|ref|ZP_02411033.1| 23S rRNA 5-methyluridine methyltransferase [Burkholderia pseudomallei 14] gi|167815449|ref|ZP_02447129.1| 23S rRNA 5-methyluridine methyltransferase [Burkholderia pseudomallei 91] gi|167845400|ref|ZP_02470908.1| 23S rRNA 5-methyluridine methyltransferase [Burkholderia pseudomallei B7210] gi|167910633|ref|ZP_02497724.1| 23S rRNA 5-methyluridine methyltransferase [Burkholderia pseudomallei 112] gi|254178072|ref|ZP_04884727.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia mallei ATCC 10399] gi|254189063|ref|ZP_04895574.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia pseudomallei Pasteur 52237] gi|254297423|ref|ZP_04964876.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia pseudomallei 406e] gi|254358296|ref|ZP_04974569.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia mallei 2002721280] gi|90126210|sp|Q62JV9|RUMA_BURMA RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|91207803|sp|Q3JRP8|RUMA_BURP1 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|97273505|sp|Q63UT8|RUMA_BURPS RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|52209556|emb|CAH35509.1| putative 23S rRNA (uracil-5-)-methyltransferase [Burkholderia pseudomallei K96243] gi|52426978|gb|AAU47571.1| ribosomal RNA large subunit (uracil-5-)-methyltransferase [Burkholderia mallei ATCC 23344] gi|124293051|gb|ABN02320.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia mallei NCTC 10229] gi|126240946|gb|ABO04039.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia mallei NCTC 10247] gi|148027423|gb|EDK85444.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia mallei 2002721280] gi|157807232|gb|EDO84402.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia pseudomallei 406e] gi|157936742|gb|EDO92412.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia pseudomallei Pasteur 52237] gi|160699111|gb|EDP89081.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia mallei ATCC 10399] Length = 465 Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 55/189 (29%), Positives = 81/189 (42%), Gaps = 22/189 (11%) Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 FTQ N IN ++ L +GD +L+L+CG GNF+L LAR V+ +E + Sbjct: 287 FTQVNHQINRVLVGRALRLLAPERGDRVLDLFCGIGNFTLPLARLAREVVGIEGSDALTA 346 Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG-- 303 A N N V+ F E + L+ + F VDPPR G Sbjct: 347 RALENAKENGVDG-------HTSFACRNLFEVTADDLRALGA----FDKFLVDPPREGAL 395 Query: 304 ------LDDATVGMVQAYPHILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTRH 355 + A G I+Y+SCNP +L RD +L + ++ + + FP+T H Sbjct: 396 AVSKALAEIAQSGAGPLPARIVYVSCNPSTLARDAGLLVHEAGYRLKGAGVVNMFPHTSH 455 Query: 356 MECGVLLVR 364 +E L R Sbjct: 456 VESIALFER 464 >gi|170681470|ref|YP_001742967.1| 23S rRNA methyluridine methyltransferase [Escherichia coli SMS-3-5] gi|226725408|sp|B1LN12|RUMB_ECOSM RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName: Full=23S rRNA(M-5-U747)-methyltransferase gi|170519188|gb|ACB17366.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli SMS-3-5] Length = 375 Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 45/157 (28%), Positives = 73/157 (46%), Gaps = 22/157 (14%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + +L+CG G F L A ++ +EIA ++ A+ + A + ++ + S +F A Sbjct: 237 MWDLFCGVGGFGLHCATPDIQLTGIEIAPEAIACAKQSAAELGLTRLQFQALDSTQFATA 296 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSG----LDDATVGMVQAYPHILYISCNPDSL 328 E + V+PPR G L D M + I+Y SCN ++ Sbjct: 297 QGEVPEL---------------VLVNPPRRGIGIPLCDYLSTMAPRF--IIYSSCNAQTM 339 Query: 329 CRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 +D+ L + IER+ LFD FP+T H E LLV++ Sbjct: 340 AKDIRELPG-YRIERVQLFDMFPHTAHYEVLTLLVKQ 375 >gi|317491408|ref|ZP_07949844.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Enterobacteriaceae bacterium 9_2_54FAA] gi|316920955|gb|EFV42278.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Enterobacteriaceae bacterium 9_2_54FAA] Length = 377 Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 45/157 (28%), Positives = 73/157 (46%), Gaps = 18/157 (11%) Query: 211 GDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270 + +L+CG G F L A ++ +EI+ ++ A + + NV+ + S F Sbjct: 235 SSMWDLFCGVGGFGLHCATPEMKLTGIEISAEAIACATRSAQKIGLQNVQFSALDSTRFA 294 Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSL 328 A E E L + V+PPR G+ + A +ILY SCN ++ Sbjct: 295 SA---EGEVPEL------------VLVNPPRRGIGAELCEYLGKMAPDYILYSSCNAQTM 339 Query: 329 CRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 +D++ L + IE++ LFD FP+T H E LLV + Sbjct: 340 AQDIARLKN-YRIEQVQLFDMFPHTAHYEVLTLLVHQ 375 >gi|58259996|ref|XP_567408.1| tRNA methyltransferase [Cryptococcus neoformans var. neoformans JEC21] gi|134116134|ref|XP_773238.1| hypothetical protein CNBJ0170 [Cryptococcus neoformans var. neoformans B-3501A] gi|50255860|gb|EAL18591.1| hypothetical protein CNBJ0170 [Cryptococcus neoformans var. neoformans B-3501A] gi|57229458|gb|AAW45891.1| tRNA methyltransferase, putative [Cryptococcus neoformans var. neoformans JEC21] Length = 613 Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 69/268 (25%), Positives = 105/268 (39%), Gaps = 50/268 (18%) Query: 132 RECAIRLRDAL--------HARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQI 183 + I LRDAL + +Q G + + V ER+ ++ Sbjct: 354 KGATILLRDALLEPEPLPTAENPWNVQEAGEEEHVAVTDHKAQVYERVG----PWLFSFT 409 Query: 184 ENSFTQPNAGINVHMLEWVLAA--------TKGIQGDLLELYCGNGNFSLVLARHFDRVL 235 SF Q N I + + +V A L++ YCG+G F + L+ F V Sbjct: 410 AGSFFQNNNSILIPLTTYVQEAIFAPNPNPNLPRPTHLVDTYCGSGLFGITLSPSFIAVA 469 Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295 VEI+ S+EAA+ N N + + K + K E F L + + R + Sbjct: 470 GVEISSLSIEAAKRNAEMNGLKD-KTTWLCGKA-------EDIFGGLAEQGF-AGRHSCV 520 Query: 296 FVDPPRSGLDDATVGMVQAY-P-HILYISCNPDSLCRDLSIL------------------ 335 VDPPR G D + + + P I+Y+SCN + RD+ L Sbjct: 521 VVDPPRKGCDTPFLDQLLNFRPLTIVYVSCNVHTQARDVGYLVHESNKRGQVSEGKEEGV 580 Query: 336 -STTHTIERLALFDQFPYTRHMECGVLL 362 +T+E L FD FP T H+E +L Sbjct: 581 KGWKYTVESLRGFDLFPQTAHVESVAVL 608 >gi|156549461|ref|XP_001603783.1| PREDICTED: similar to ENSANGP00000011586 [Nasonia vitripennis] Length = 615 Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 44/164 (26%), Positives = 75/164 (45%), Gaps = 23/164 (14%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 LL++ CG G L A+H D VL +E+ ++E A+ N N V N + +++ Sbjct: 452 LLDVCCGTGTIGLSFAKHCDEVLGIEMTPSAIENAKVNAKENDVKNCEFFVGKAEDILLP 511 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD---ATVGMVQAYPHILYISCNPDSLC 329 + NR +I VDPPR+GL ++ + ++YISC+P + Sbjct: 512 V-----INRTTKPNI------VAIVDPPRAGLHQKALVSLRKAKKLKKLVYISCDPKAAI 560 Query: 330 RDLSILSTTHTIE---------RLALFDQFPYTRHMECGVLLVR 364 R+L L+ ++ + + D FP+T+H E + L R Sbjct: 561 RNLVDLARPNSKQYFGEPLVPVKAVPVDMFPHTKHCELVLYLER 604 >gi|290999475|ref|XP_002682305.1| S-adenosylmethionine-dependent methyltransferase [Naegleria gruberi] gi|284095932|gb|EFC49561.1| S-adenosylmethionine-dependent methyltransferase [Naegleria gruberi] Length = 580 Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 53/200 (26%), Positives = 84/200 (42%), Gaps = 27/200 (13%) Query: 186 SFTQPNA-GINV---HMLEWVLAATKGIQGD---LLELYCGNGNFSLVLARHFDRVLAVE 238 SF Q N G+ V + EW L + LL++ G G +A RV+ +E Sbjct: 385 SFFQVNTKGVEVLYSKVKEWTLESMDKESNKERVLLDVCSGTGTIGSTMASSVSRVIGIE 444 Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298 + + SV AR N N++ N+ V +++ E N +++ VD Sbjct: 445 MVESSVNDARKNAQLNNIQNITFVCGKAEDTITTKMVEHNLNS-SNVEC------VAVVD 497 Query: 299 PPRSGLDDATVGMVQAYPHI---LYISCNPDSLCRD-LSILSTTHTIE---------RLA 345 PPRSGL + + P I +Y+SCNP +L + + + T T+ + Sbjct: 498 PPRSGLHKKVLESILRSPTIEKLIYVSCNPKTLVENAIRLCGPTSTVRASYGAFKPVKAI 557 Query: 346 LFDQFPYTRHMECGVLLVRK 365 D FP+T H E + RK Sbjct: 558 AVDMFPHTEHCEMICVFERK 577 >gi|217421778|ref|ZP_03453282.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia pseudomallei 576] gi|226197424|ref|ZP_03793001.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia pseudomallei Pakistan 9] gi|217395520|gb|EEC35538.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia pseudomallei 576] gi|225930803|gb|EEH26813.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia pseudomallei Pakistan 9] Length = 485 Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 55/189 (29%), Positives = 81/189 (42%), Gaps = 22/189 (11%) Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 FTQ N IN ++ L +GD +L+L+CG GNF+L LAR V+ +E + Sbjct: 307 FTQVNHQINRVLVGRALRLLAPERGDRVLDLFCGIGNFTLPLARLAREVVGIEGSDALTA 366 Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG-- 303 A N N V+ F E + L+ + F VDPPR G Sbjct: 367 RALENAKENGVDG-------HTSFACRNLFEVTADDLRALGA----FDKFLVDPPREGAL 415 Query: 304 ------LDDATVGMVQAYPHILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTRH 355 + A G I+Y+SCNP +L RD +L + ++ + + FP+T H Sbjct: 416 AVSKALAEIAQSGAGPLPTRIVYVSCNPSTLARDAGLLVHEAGYRLKGAGVVNMFPHTSH 475 Query: 356 MECGVLLVR 364 +E L R Sbjct: 476 VESIALFER 484 >gi|213962114|ref|ZP_03390378.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Capnocytophaga sputigena Capno] gi|213955120|gb|EEB66438.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Capnocytophaga sputigena Capno] Length = 470 Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 59/204 (28%), Positives = 90/204 (44%), Gaps = 26/204 (12%) Query: 175 GRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGDLL--ELYCGNGNFS 224 G IY ++E SF Q N+ H L + ++GD L +LY G G + Sbjct: 277 GTDCIYEEMEGLRFKINAKSFYQTNSK-QAHKLYQITRDFADLKGDELVYDLYTGTGTIA 335 Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE-FTQAMRREREFNRLK 283 +AR +V+ VE ++ A+ N AN + NV K F + N Sbjct: 336 QFVARKAKKVVGVEAVPEAIADAKANAKANGIENVSFYVGDMKNVFNDTFIKA---NGTP 392 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTI 341 D+ I DPPR G+ V + A P I+Y+SCN + RDL++L + + Sbjct: 393 DV---------IITDPPRDGMHKDVVEQILQIAPPKIVYVSCNSATQARDLALLDEMYKV 443 Query: 342 ERLALFDQFPYTRHMECGVLLVRK 365 ++ D FP T H+E VLL ++ Sbjct: 444 TKVQPVDMFPQTYHVENVVLLEKR 467 >gi|322498729|emb|CBZ33802.1| unnamed protein product [Leishmania donovani BPK282A1] Length = 603 Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 54/203 (26%), Positives = 87/203 (42%), Gaps = 23/203 (11%) Query: 178 LIYRQIENSFTQPNA-GINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLA 236 L + +F Q N G+ M++ A LL+L G G L L++H RV+ Sbjct: 370 LCFELSPTAFFQVNTPGMETMMMKVAEVAELSAGTTLLDLCSGTGTIGLTLSKHVKRVIG 429 Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296 +E+ + +V AR N N + N + + ++ DI + Sbjct: 430 IELVESAVANARRNAQQNGITNAEFHCGRVEHLLPSVISGLPAEDRGDI--------VVI 481 Query: 297 VDPPRSGLDDATV----GMVQAYPHILYISCNPDSLCRDLSILSTTHT-------IERLA 345 +DPPR+G++ + GM + ++YISC +L RD L+ T E A Sbjct: 482 LDPPRAGVNSTVLRWIRGM-ETIRRVVYISCEQRALERDCPGLTKPSTKAYRGTPFEVTA 540 Query: 346 LF--DQFPYTRHMECGVLLVRKP 366 F D FP+T H+E +L R+P Sbjct: 541 AFAVDLFPHTHHVEMVAVLTRRP 563 >gi|229491254|ref|ZP_04385080.1| tram domain protein [Rhodococcus erythropolis SK121] gi|229321793|gb|EEN87588.1| tram domain protein [Rhodococcus erythropolis SK121] Length = 422 Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 63/215 (29%), Positives = 88/215 (40%), Gaps = 20/215 (9%) Query: 153 GRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD 212 G KT++ + D V ER+ L + A + + EW AAT D Sbjct: 225 GGPRKTRVAIGSDTVIERVGSREWALAATGFWQAHRGAAAAYSQVVGEWAGAATADTAWD 284 Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L Y G G F+ VLA VE + S A AA ++++ VR S Sbjct: 285 L---YGGVGVFAAVLAELVGPSGVVESVESSARAVADGQAA--LSDLGQVRFHSA----- 334 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCR 330 R N + D++ + +DPPR+G V + A I++I C+P S R Sbjct: 335 ----RVENIIADLERSP---AVVVLDPPRAGAGRPVVEALAATGAERIVHIGCDPASFGR 387 Query: 331 DLSI-LSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D+ + L I L FD FP T HMEC L R Sbjct: 388 DIGLYLEQGFRIGGLRAFDAFPQTHHMECIAFLER 422 >gi|149246690|ref|XP_001527770.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL YB-4239] gi|146447724|gb|EDK42112.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL YB-4239] Length = 550 Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 59/211 (27%), Positives = 108/211 (51%), Gaps = 38/211 (18%) Query: 182 QIENS-FTQPNAGINVHMLEWV-----LAATKGIQGDLLELYCGNGNFSLVLARHFD--R 233 Q ENS F Q N I +L+++ L K + ++++ YCG G F + L++ D + Sbjct: 347 QFENSCFFQNNNSILSMVLDYMRFHINLLDNKVV--NIVDTYCGVGFFGIALSQLHDNVK 404 Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVK---IVRMSSKEFTQAMRREREFNRLKDIDIHSY 290 V +E++ S++ A++N N ++ K I+ +SK F+ +EF KD D + + Sbjct: 405 VFGIEVSDSSIKYAQHNAKLNGLDQEKVKFILGDASKIFSN-----KEF---KD-DNNRF 455 Query: 291 RFK----TIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCRDLSIL--------- 335 + K + +DP R G D+ + +++ P I+Y+SCN + RDL++ Sbjct: 456 KIKGDDSVVIIDPSRKGSDEQFLRQLLEFEPRMIIYVSCNVFTQARDLALFEKLQLQLHQ 515 Query: 336 -STTHTIERLALFDQFPYTRHMECGVLLVRK 365 + +E++ FD FP T+H+E +L +K Sbjct: 516 NKKLYNVEQVTGFDFFPQTKHVESIAVLKKK 546 >gi|291528120|emb|CBK93706.1| 23S rRNA m(5)U-1939 methyltransferase [Eubacterium rectale M104/1] Length = 468 Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 66/238 (27%), Positives = 109/238 (45%), Gaps = 30/238 (12%) Query: 137 RLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINV 196 R + LH + + + + T + Y E L L ++ SF Q N+ + Sbjct: 248 RFKGVLHTQNDSVADVVKNEGTDVLYGDSYFYEELL----GLKFKITPFSFFQTNS-LGA 302 Query: 197 HML-----EWVLAATK-GIQGDLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249 +L E++L K + G + +LY G G + ++A V+ VEI + +V AA+ Sbjct: 303 EVLYETAREFILGDDKDSLNGKTVYDLYSGTGTIAQLMAPVCKEVVGVEIVEEAVCAAKE 362 Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309 N A N ++N K + + LK +D + I +DPPR G+ + Sbjct: 363 NAALNGLDNCKFIAG---------------DVLKVLDEIEEKPDYIILDPPRDGIHPKAI 407 Query: 310 GMVQAY--PHILYISCNPDSLCRDLSI-LSTTHTIERLALFDQFPYTRHMECGVLLVR 364 G + Y +++YISC P SL RDL I ++ + +E++ D FP T H+E V L R Sbjct: 408 GKIIEYGVENMVYISCKPTSLARDLQIFMARGYRVEKICCVDMFPNTYHIETIVALHR 465 >gi|254776021|ref|ZP_05217537.1| RNA methyltransferase [Mycobacterium avium subsp. avium ATCC 25291] Length = 395 Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 57/191 (29%), Positives = 85/191 (44%), Gaps = 37/191 (19%) Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD---RVLA 236 YR + + QP AG M W +LY G G F+ L RVL+ Sbjct: 236 YRALVLDWAQPGAG----MTAW-------------DLYGGAGVFAAALGEAVGASGRVLS 278 Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296 V+ ++ S AAR +A + V++V T ++RR R + + Sbjct: 279 VDTSRASTRAARAALA--DLPQVQVV-------TDSVRRALAAQRTP-----ALKADVAV 324 Query: 297 VDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSI-LSTTHTIERLALFDQFPYT 353 +DPPR+G + + A P I++I C S RD+ I L +T+E++ +FD FP T Sbjct: 325 LDPPRAGAGREVIDSLSAAGVPRIVHIGCEAASFARDMGIYLGHGYTVEKIRVFDAFPLT 384 Query: 354 RHMECGVLLVR 364 H EC LL R Sbjct: 385 HHSECVALLTR 395 >gi|325963014|ref|YP_004240920.1| SAM-dependent methyltransferase, tRNA(uracil-5)-methyltransferase [Arthrobacter phenanthrenivorans Sphe3] gi|323469101|gb|ADX72786.1| SAM-dependent methyltransferase, tRNA(uracil-5)-methyltransferase [Arthrobacter phenanthrenivorans Sphe3] Length = 458 Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 66/231 (28%), Positives = 98/231 (42%), Gaps = 48/231 (20%) Query: 150 QLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGI 209 QL GR + DY R+T AG I+R + V A T+ + Sbjct: 262 QLRGRTWVQETAAGHDY---RVTGAGFWQIHRDAPEAL--------------VGAVTQFL 304 Query: 210 QGD--------LLELYCGNGNFSLVLA---RHFDRVLAVEIAKPSVEAARYNIAANHVNN 258 QG + +LY G G F+ VLA VL+VE A + AR N+ A Sbjct: 305 QGGGYLHPGAVVADLYAGAGLFTAVLADAVGETGSVLSVEGAAGTSRDARKNLHA--APQ 362 Query: 259 VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH 317 V+IV+ + + R++ N F + +DPPR+G A V ++ A+P Sbjct: 363 VEIVQGR----VERVLRQKPRN-----------FDALILDPPRAGAGKAVVNQLLAAHPR 407 Query: 318 -ILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRKP 366 I Y+SC+P S RD+ + L D +P+T H+E LL +P Sbjct: 408 AIAYVSCDPASFARDVGYFRQAGWELSGLRALDLYPHTHHLETVALLAPRP 458 >gi|134277323|ref|ZP_01764038.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia pseudomallei 305] gi|134250973|gb|EBA51052.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia pseudomallei 305] Length = 485 Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 55/190 (28%), Positives = 81/190 (42%), Gaps = 24/190 (12%) Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 FTQ N IN ++ L +GD +L+L+CG GNF+L LAR V+ +E + Sbjct: 307 FTQVNHQINRVLVGRALRLLAPERGDRVLDLFCGIGNFTLPLARLAREVVGIEGSDALTA 366 Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY-RFKTIFVDPPRSG- 303 A N N V+ F R + D+ + F VDPPR G Sbjct: 367 RALENAKENGVDG-------HTSFAC-----RNLFEVTSDDLRALGAFDKFLVDPPREGA 414 Query: 304 -------LDDATVGMVQAYPHILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTR 354 + A G I+Y+SCNP +L RD +L + ++ + + FP+T Sbjct: 415 LAVSKALAEIAQSGAGPLPTRIVYVSCNPSTLARDAGLLVHEAGYRLKGAGVVNMFPHTS 474 Query: 355 HMECGVLLVR 364 H+E L R Sbjct: 475 HVESIALFER 484 >gi|331646127|ref|ZP_08347230.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli M605] gi|330910641|gb|EGH39151.1| 23S rRNA (Uracil-5-) -methyltransferase rumB [Escherichia coli AA86] gi|331044879|gb|EGI17006.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli M605] Length = 375 Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 43/155 (27%), Positives = 71/155 (45%), Gaps = 18/155 (11%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + +L+CG G F L A ++ +EIA ++ A+ + A + ++ + S +F A Sbjct: 237 MWDLFCGVGGFGLHCATPDMQLTGIEIAPEAIACAKQSAAELGLTRLQFQALDSTQFATA 296 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCR 330 E + V+PPR G+ + A I+Y SCN ++ + Sbjct: 297 QGEVPEL---------------VLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAK 341 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 D+ L IER+ LFD FP+T H E LLV++ Sbjct: 342 DIRELPGFR-IERVQLFDMFPHTAHYEVLTLLVKQ 375 >gi|167893942|ref|ZP_02481344.1| 23S rRNA 5-methyluridine methyltransferase [Burkholderia pseudomallei 7894] gi|167918662|ref|ZP_02505753.1| 23S rRNA 5-methyluridine methyltransferase [Burkholderia pseudomallei BCC215] Length = 465 Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 55/189 (29%), Positives = 81/189 (42%), Gaps = 22/189 (11%) Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 FTQ N IN ++ L +GD +L+L+CG GNF+L LAR V+ +E + Sbjct: 287 FTQVNHQINRVLVGRALRLLAPERGDRVLDLFCGIGNFTLPLARLAREVVGIEGSDALTA 346 Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG-- 303 A N N V+ F E + L+ + F VDPPR G Sbjct: 347 RALENAKENGVDG-------HTSFACRNLFEVTADDLRALGA----FDKFLVDPPREGAL 395 Query: 304 ------LDDATVGMVQAYPHILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTRH 355 + A G I+Y+SCNP +L RD +L + ++ + + FP+T H Sbjct: 396 AVSKALAEIAQSGAGPLPTRIVYVSCNPSTLARDAGLLVHEAGYRLKGAGVVNMFPHTSH 455 Query: 356 MECGVLLVR 364 +E L R Sbjct: 456 VESIALFER 464 >gi|307246027|ref|ZP_07528109.1| 23S rRNA (uracil-5-)-methyltransferase rumB [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307255009|ref|ZP_07536827.1| 23S rRNA (uracil-5-)-methyltransferase rumB [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307259445|ref|ZP_07541170.1| 23S rRNA (uracil-5-)-methyltransferase rumB [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306852962|gb|EFM85185.1| 23S rRNA (uracil-5-)-methyltransferase rumB [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306861882|gb|EFM93858.1| 23S rRNA (uracil-5-)-methyltransferase rumB [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306866381|gb|EFM98244.1| 23S rRNA (uracil-5-)-methyltransferase rumB [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 391 Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 38/159 (23%), Positives = 73/159 (45%), Gaps = 23/159 (14%) Query: 215 ELYCGNGNFSLVLARHFD------RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268 +L+CG G F L A+ ++ +EI+ ++ +A + + N+ + S + Sbjct: 247 DLFCGVGGFGLHCAKALQEKNENVQLTGIEISASAIASATKSAEQLQLKNITFASLDSAQ 306 Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPD 326 F ++ S + V+PPR G+ + P+++Y SCN Sbjct: 307 FA--------------LNEKSATPDLVIVNPPRRGIGKPLAEFLNQLGTPYLIYSSCNAR 352 Query: 327 SLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 ++ +D LS ++++++ LFD FP+T H E LV+K Sbjct: 353 TMAQDFEALSN-YSLQKVQLFDMFPHTSHYEVLTFLVKK 390 >gi|82543347|ref|YP_407294.1| 23S rRNA methyluridine methyltransferase [Shigella boydii Sb227] gi|123560143|sp|Q323P2|RUMB_SHIBS RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName: Full=23S rRNA(M-5-U747)-methyltransferase gi|81244758|gb|ABB65466.1| putative enzyme [Shigella boydii Sb227] gi|320183201|gb|EFW58059.1| 23S rRNA methyluridine methyltransferase [Shigella flexneri CDC 796-83] gi|332097262|gb|EGJ02245.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Shigella boydii 3594-74] Length = 375 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 43/155 (27%), Positives = 71/155 (45%), Gaps = 18/155 (11%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + +L+CG G F L A ++ +EIA ++ A+ + A + ++ + S +F A Sbjct: 237 MWDLFCGVGGFGLHCATPDMQLTGIEIAPEAIACAKQSAAELGLTRLQFQALDSTQFATA 296 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCR 330 E + V+PPR G+ + A I+Y SCN ++ + Sbjct: 297 QGEVPEL---------------VLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAK 341 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 D+ L IER+ LFD FP+T H E LLV++ Sbjct: 342 DIRELPGFR-IERVQLFDMFPHTAHYEVLTLLVKQ 375 >gi|261401379|ref|ZP_05987504.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Neisseria lactamica ATCC 23970] gi|269208586|gb|EEZ75041.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Neisseria lactamica ATCC 23970] Length = 443 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 55/189 (29%), Positives = 81/189 (42%), Gaps = 32/189 (16%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 FTQ N N M+ + QG+ + +L+CG GNFSL + + V+ +E A+ Sbjct: 265 GDFTQINTDTNRLMVSRAVKMLDIRQGERIADLFCGLGNFSLPMVKSGADVVGIEGAENL 324 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 V A N N + +F A F+ + RF + +DPPRSG Sbjct: 325 VRRAWQNARLNGCDG-------QTDFIAA----NLFDCTEKTVASWGRFDKMLIDPPRSG 373 Query: 304 LDDATVGMVQAY-PH-ILYISCNPDSLCRDLSIL-----------------STTHTIERL 344 + + Y P I+Y+SCNP +L RD +L T+HT E + Sbjct: 374 AYEVVKSLHTPYLPQKIVYVSCNPSTLARDAGVLVEKGYILSGAGIMNMFAQTSHT-ESV 432 Query: 345 ALFDQFPYT 353 A+FD P T Sbjct: 433 AVFDLLPQT 441 >gi|332881940|ref|ZP_08449582.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332680175|gb|EGJ53130.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 467 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 58/204 (28%), Positives = 94/204 (46%), Gaps = 26/204 (12%) Query: 175 GRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGDLL--ELYCGNGNFS 224 G+ IY ++E SF Q N+ + E V ++GD L +LY G G + Sbjct: 277 GQDCIYEEMEGLRFKINAKSFYQTNSKQAQRLYE-VARDFADLKGDELVYDLYTGTGTIA 335 Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE-FTQAMRREREFNRLK 283 +A+ RV+ VE ++ A+ N AAN ++NV K F +A N + Sbjct: 336 QFVAKRAKRVVGVEAVPEAIADAKANAAANGIDNVSFYVGDMKNVFNEAFIAA---NGVP 392 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTI 341 D+ I DPPR G+ V + A ++Y+SCN + RDL+++ + + Sbjct: 393 DV---------IITDPPRDGMHKDVVAQILHIAPAKVVYVSCNSATQARDLALMDEQYKV 443 Query: 342 ERLALFDQFPYTRHMECGVLLVRK 365 ++ D FP T H+E VLL ++ Sbjct: 444 TKVQPVDMFPQTYHVENVVLLEKR 467 >gi|149758689|ref|XP_001488208.1| PREDICTED: similar to HpaII tiny fragments locus 9C [Equus caballus] Length = 633 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 47/164 (28%), Positives = 75/164 (45%), Gaps = 23/164 (14%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +L++ CG G L LAR RV+ +E+ + +VE AR N N ++NV+ +++ Sbjct: 444 VLDVCCGTGTIGLALARKVKRVVGIELCQEAVEDARVNARDNELSNVEFHCGRAEDLVPT 503 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH---ILYISCNPDS-- 327 + +RL + +DPPR+GL + V+ + +LY+SCNP + Sbjct: 504 L-----VSRLASQQL------VAVLDPPRAGLHSKVILAVRKAENLKRLLYVSCNPRAAM 552 Query: 328 -----LCRDLS--ILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 LCR S + T + D FP T H E +L R Sbjct: 553 SNFVDLCRAPSNRVKGTPFRPVKAVAVDLFPQTSHCEMLILFER 596 >gi|78212870|ref|YP_381649.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Synechococcus sp. CC9605] gi|78197329|gb|ABB35094.1| RNA methyltransferase, TrmA family [Synechococcus sp. CC9605] Length = 465 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 52/176 (29%), Positives = 80/176 (45%), Gaps = 23/176 (13%) Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVN 257 + +W+L G +++ YCG G +L LA+ V +E+ SVE AR N N ++ Sbjct: 307 LTDWLLNQCAGAL--VVDAYCGVGTIALPLAKAGFDVQGLELNPDSVEQARLNAMHNGLS 364 Query: 258 NVKIVRMSSKEFTQAMRREREFNRLKDI-DIHSYRFKTIFVDPPRSGLDDATVGMVQAYP 316 + R + D+ H + + +DPPR GLD V + P Sbjct: 365 S---------------RCAFHAGDVADLLAAHLDDCQALVLDPPRRGLDRRVVDSILEQP 409 Query: 317 H--ILYISCNPDSLCRDLSIL---STTHTIERLALFDQFPYTRHMECGVLLVRKPS 367 ++Y+SC+P + RDL L S ++ +E L D FP T H+E LL R S Sbjct: 410 PVVVVYLSCDPATQARDLKALLAPSGSYELEVLQPVDFFPQTTHLESLALLKRVSS 465 >gi|298294381|ref|YP_003696320.1| (uracil-5)-methyltransferase [Starkeya novella DSM 506] gi|296930892|gb|ADH91701.1| (Uracil-5)-methyltransferase [Starkeya novella DSM 506] Length = 426 Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 54/176 (30%), Positives = 81/176 (46%), Gaps = 18/176 (10%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 SF Q A + V+ AT+ G + +L+ G G F L LA RV A E + P+V Sbjct: 259 GSFLQATAAGEATLASLVMEATE-KAGRIADLFSGVGTFGLRLAER-ARVAAYESSAPAV 316 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 EA A V+ +K V + R+ R + + F + DPPR G Sbjct: 317 EA--LVKATRGVSGLKPVTAEA----------RDLFRRPLLPLELKAFDAVVFDPPRQGA 364 Query: 305 DDATVGMVQA--YPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHME 357 + A V + A P ++ +SC+P + RD IL + +ER+ DQF Y+ H+E Sbjct: 365 E-AQVRQLAASKVPLVVGVSCDPVTFARDAQILVEGGYRLERVTPVDQFLYSAHVE 419 >gi|171463398|ref|YP_001797511.1| RNA methyltransferase, TrmA family [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171192936|gb|ACB43897.1| RNA methyltransferase, TrmA family [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 475 Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 46/162 (28%), Positives = 75/162 (46%), Gaps = 21/162 (12%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +L+L+CG GNF+L LAR +VL +E + A+ N N +++ K M S F Sbjct: 324 VLDLFCGIGNFTLPLARKAKQVLGIEGLESLTARAKSNAQHNGLSD-KASFMQSDLFEVT 382 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--------PHILYISCN 324 + + R+ +DPPR G D + + + I+Y+SCN Sbjct: 383 SETVASWG-------GAERW---LMDPPRKGAMDICKALAELHLQQSDLLPERIVYVSCN 432 Query: 325 PDSLCRDLSILS--TTHTIERLALFDQFPYTRHMECGVLLVR 364 P +L RD+ IL + + + + FP+T H+E V+ R Sbjct: 433 PKTLARDVEILCHQAGYRLSSAGIINMFPHTSHVESMVVFDR 474 >gi|291296019|ref|YP_003507417.1| (Uracil-5)-methyltransferase [Meiothermus ruber DSM 1279] gi|290470978|gb|ADD28397.1| (Uracil-5)-methyltransferase [Meiothermus ruber DSM 1279] Length = 412 Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 49/152 (32%), Positives = 73/152 (48%), Gaps = 20/152 (13%) Query: 214 LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273 +ELY G+G SL LA F V+A+EI +V+ + V N+ VR + Sbjct: 276 VELYAGSGVLSLHLAHRFTEVVAIEINPSAVKRGEADRDRLGVQNLVFVRDDA------- 328 Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGL-DDATVGMVQAYP-HILYISCNPDSLCRD 331 R R D+ + VDPPR+GL + G+++ P ILYI+C+P + RD Sbjct: 329 ---RVLGRHLPADL-------VMVDPPRAGLAPEVLAGLLEKKPRQILYIACDPATWARD 378 Query: 332 LSILSTTHTIERLA-LFDQFPYTRHMECGVLL 362 + L R A +D +P+T H+E LL Sbjct: 379 IGRLVQGGYRLRFARPYDFYPFTHHVEVLSLL 410 >gi|293409234|ref|ZP_06652810.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli B354] gi|291469702|gb|EFF12186.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli B354] Length = 375 Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 43/155 (27%), Positives = 71/155 (45%), Gaps = 18/155 (11%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + +L+CG G F L A ++ +EIA ++ A + A + ++ + S +F A Sbjct: 237 MWDLFCGVGGFGLHCATPDMQLTGIEIAPEAIACANQSAAELGLTRLQFQALDSTQFATA 296 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCR 330 E + V+PPR G+ + A I+Y SCN ++ + Sbjct: 297 QGEVPEL---------------VLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAK 341 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 D+ L + IER+ LFD FP+T H E LLV++ Sbjct: 342 DIRELPG-YRIERVQLFDMFPHTAHYEVLTLLVKQ 375 >gi|54025714|ref|YP_119956.1| putative RNA methyltransferase [Nocardia farcinica IFM 10152] gi|54017222|dbj|BAD58592.1| putative ribosomal RNA large subunit methyltransferase [Nocardia farcinica IFM 10152] Length = 430 Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 49/158 (31%), Positives = 67/158 (42%), Gaps = 25/158 (15%) Query: 215 ELYCGNGNFSLVLARHFD---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271 +LY G G F+ LA VLAVE A+P+V R + ++ Sbjct: 290 DLYSGAGVFAARLAEQAGPDGAVLAVESARPAVADGRAAL---------------RDLPW 334 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLC 329 R R + + + +DPPR+G V V A I++I C+P S Sbjct: 335 VDLRAARVERWAGEHARTAPPRVVVLDPPRAGAGKEVVAAVTAAGPERIVHIGCDPASFA 394 Query: 330 RDLSILSTTHTIERLA---LFDQFPYTRHMECGVLLVR 364 RD+ + H RLA +FD FP T HMEC LL R Sbjct: 395 RDIGLYH--HGGYRLAGLRVFDAFPGTHHMECVALLTR 430 >gi|320175299|gb|EFW50405.1| 23S rRNA methyluridine methyltransferase [Shigella dysenteriae CDC 74-1112] Length = 375 Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 43/155 (27%), Positives = 71/155 (45%), Gaps = 18/155 (11%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + +L+CG G F L A ++ +EIA ++ A+ + A + ++ + S +F A Sbjct: 237 MWDLFCGVGGFGLHCATPDMQLTGIEIAPEAIACAKQSAAELGLTRLQFQALDSTQFATA 296 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCR 330 E + V+PPR G+ + A I+Y SCN ++ + Sbjct: 297 QGEVPEL---------------VLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAK 341 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 D+ L IER+ LFD FP+T H E LLV++ Sbjct: 342 DIRELPGFR-IERVQLFDMFPHTAHYEVLTLLVKQ 375 >gi|121713680|ref|XP_001274451.1| tRNA(m5U54)methyltransferase [Aspergillus clavatus NRRL 1] gi|119402604|gb|EAW13025.1| tRNA(m5U54)methyltransferase [Aspergillus clavatus NRRL 1] Length = 579 Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 53/204 (25%), Positives = 92/204 (45%), Gaps = 28/204 (13%) Query: 179 IYRQIENSFTQPNAGINVHMLEWV--LAATKGIQGD------LLELYCGNGNFSLVLARH 230 I+ +F Q N I +++ LA K + D LL+ Y G+G F++ L+ Sbjct: 386 IFTNKAGAFFQNNNSILSGFTDYIRQLALPKDNEKDAKPIKYLLDAYSGSGLFTITLSPL 445 Query: 231 FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY 290 F L V++A S+ +AR N AN + N + KD+ + Sbjct: 446 FKSSLGVDVAGDSIISARENARANALPNTGFAAADAAVL------------FKDVP-YPP 492 Query: 291 RFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSIL-----STTHTIER 343 + +DPPR G D + + +Y ++Y+SCN + RD++++ + + IE Sbjct: 493 EQTLLVIDPPRKGCSDDFLRQLLSYGPRRVVYVSCNVHTQARDVAVMVQGDANCRYEIES 552 Query: 344 LALFDQFPYTRHMECGVLLVRKPS 367 + FD FP T H+E +L + P+ Sbjct: 553 IRGFDFFPQTGHVEGVAILNKVPA 576 >gi|294155861|ref|YP_003560245.1| hypothetical RNA methyltransferase [Mycoplasma crocodyli MP145] gi|291600330|gb|ADE19826.1| hypothetical RNA methyltransferase [Mycoplasma crocodyli MP145] Length = 435 Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 36/149 (24%), Positives = 79/149 (53%), Gaps = 16/149 (10%) Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271 +++ELYCG G+ ++L+ +++ +EI++ S++ A N N++ N + + Sbjct: 290 EIIELYCGVGSLGMLLSNKEQKLIGIEISESSIKNANQNKEINNLKNTTYYQGDA----- 344 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLC 329 F+ +K ++++ + I +DPPR+GLD + + ++LYISC+ ++ Sbjct: 345 -------FDIIKKVNVN-LKNNLIILDPPRAGLDKKLINFLAQNEAENVLYISCDLGTMI 396 Query: 330 RDLSILST-THTIERLALFDQFPYTRHME 357 RD+ + + + + + +D F T H+E Sbjct: 397 RDIKLFNELGYELLFIKGYDVFRNTSHIE 425 >gi|311106590|ref|YP_003979443.1| methyltransferase [Achromobacter xylosoxidans A8] gi|310761279|gb|ADP16728.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Achromobacter xylosoxidans A8] Length = 497 Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 62/239 (25%), Positives = 100/239 (41%), Gaps = 50/239 (20%) Query: 144 ARKYQIQ--LIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE---------NSFTQPNA 192 A K+ +Q L + +T L+R++ G TL Y E FTQ N Sbjct: 216 AAKHNVQWWLQSKGPETVHPLEREH--------GETLAYTMPEFGLRMPYRPTDFTQVNH 267 Query: 193 GINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251 IN M+ L + D + +L+CG GNF+L LA + VE +K + A ++ Sbjct: 268 AINRAMVSRALKLLEVQTTDRVADLFCGLGNFTLPLATQGKEAVGVEGSKALTDRA-FDA 326 Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLK--DIDIHSYR----FKTIFVDPPRSGLD 305 A+ H + F L ++D+ R F + +DPPR G Sbjct: 327 ASRH----------------GLGDRTSFATLNLFEVDVEWLRGLGYFDRMLIDPPREGAH 370 Query: 306 DATVGMVQAYPH-----ILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTRHME 357 + H I+Y+SCNP +L RD +I+ + ++ + + FP+T H+E Sbjct: 371 AVAQALSLLEAHERPVRIVYVSCNPATLARDAAIMVHEGGYVLKSAGVINMFPHTGHVE 429 >gi|148652196|ref|YP_001279289.1| 23S rRNA 5-methyluridine methyltransferase [Psychrobacter sp. PRwf-1] gi|148571280|gb|ABQ93339.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Psychrobacter sp. PRwf-1] Length = 516 Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 68/240 (28%), Positives = 107/240 (44%), Gaps = 32/240 (13%) Query: 137 RLRDALHARKYQIQLIGRANKT--KICL-DRDYVDERLTVAGR--------TLIYRQIEN 185 +L+ AR +Q+ L + ++ +I L D D V E+ GR L Y I Sbjct: 279 QLKAFFKARNWQLYLQSKGPESIERIALHDTDDVSEQF---GRLYYQLPEFNLTYEFIPT 335 Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 FTQ N +N M + G+ +L+L+ G GNFSL LAR + V Sbjct: 336 DFTQVNLSVNRKMTKLACDLLDLKPGERVLDLFSGLGNFSLPLARLVGGEDGSQGLAIGV 395 Query: 245 EAARYNIAANHVNNVKIVRMSSKEF-TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 E + + A +N K +S+ EF Q + ++ + F I +DPPRSG Sbjct: 396 EGSDA-MTARAADNAKRNGISNTEFYNQDLTQD-----FSEQPWAQQGFDAILIDPPRSG 449 Query: 304 LDDATVGMVQAYPH-----ILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHME 357 + ++Q P I+Y+SCNP +L RD ++L + + + D F +T H+E Sbjct: 450 AWE----VMQYLPRFNASRIVYVSCNPATLARDTKALLEQGYRLTDAGVMDMFCHTGHVE 505 >gi|332140216|ref|YP_004425954.1| RNA methyltransferase, TrmA family protein [Alteromonas macleodii str. 'Deep ecotype'] gi|327550238|gb|AEA96956.1| RNA methyltransferase, TrmA family protein [Alteromonas macleodii str. 'Deep ecotype'] Length = 482 Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 48/186 (25%), Positives = 85/186 (45%), Gaps = 19/186 (10%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 N F Q N +N M+ L + + + + G GNF+L +A+ V A+E Sbjct: 309 NDFIQINKVVNEKMINQALVWLDPRPNERIADWFSGLGNFTLPIAKKGALVQAIEGVAEM 368 Query: 244 VEAARYNIAANHVNNVKIVRM--SSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301 V A+ N + NV+ + + ++K +A ++ F + +DP R Sbjct: 369 VLRAKDNAQQQGIENVEWLHLDLANKANVEASLQQG--------------FDKVLLDPSR 414 Query: 302 SGLDDATVGMVQAYPH-ILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECG 359 G +V+A P I+Y+SCNP + RD +L + + +E+ + + FP+T HME Sbjct: 415 EGALTVCHALVKALPKTIVYVSCNPSTFSRDAKVLINGGYEMEKAGVAEMFPFTHHMEMM 474 Query: 360 VLLVRK 365 L ++ Sbjct: 475 ALFTQR 480 >gi|149003890|ref|ZP_01828713.1| RNA methyltransferase, TrmA family protein [Streptococcus pneumoniae SP14-BS69] gi|237650085|ref|ZP_04524337.1| RNA methyltransferase [Streptococcus pneumoniae CCRI 1974] gi|237822146|ref|ZP_04597991.1| RNA methyltransferase [Streptococcus pneumoniae CCRI 1974M2] gi|147758120|gb|EDK65124.1| RNA methyltransferase, TrmA family protein [Streptococcus pneumoniae SP14-BS69] Length = 541 Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 40/155 (25%), Positives = 71/155 (45%), Gaps = 15/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ Y G G L +A+H V VE+ +VE ++ N + N + N V +++ + Sbjct: 308 IIDAYSGIGTIGLSVAKHVKEVYGVELIPEAVENSQKNASLNKITNAHYVCDTAENAMKK 367 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV--GMVQAYPHILYISCNPDSLCR 330 +E + I VDPPR GL ++ + I YISCN ++ R Sbjct: 368 WLKE------------GIQPTVILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMAR 415 Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364 D+ + + ++++ D FP T H+E LL + Sbjct: 416 DIKLYQELGYELKKVQPVDLFPQTHHVETVALLSK 450 >gi|71894135|ref|YP_278243.1| putative tRNA (Uracil-5-) -methyltransferase [Mycoplasma synoviae 53] Length = 433 Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 52/206 (25%), Positives = 95/206 (46%), Gaps = 29/206 (14%) Query: 175 GRTLI-------YRQIENSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSLV 226 G+T + + + +SF Q N + ++ + + + L++ YCG G ++ Sbjct: 241 GKTFVQRIGVNKFNVLNDSFFQVNGPVAKYLFDDLAELISKVNSKSLIDFYCGVGAITIY 300 Query: 227 LARHFDRV--LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284 LA F + E + +++ A N+ N +N KI + +F+ K Sbjct: 301 LATKFPELDFYGYEKNRFAIKIANENVLINKLNPEKIKFL-------------KFDLDKK 347 Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMV---QAYPHILYISCNPDSLCRDLSILS--TTH 339 ++ ++ IF DPPR+GL +V + +I YISCNP +L RD+ ++ + Sbjct: 348 LNDKVFQDSVIF-DPPRAGLSQNLKLLVLNSENVKNIFYISCNPRTLVRDVKEITEKSNF 406 Query: 340 TIERLALFDQFPYTRHMECGVLLVRK 365 I+ + +D FP T H+E V L R+ Sbjct: 407 KIKFIKGYDMFPQTHHIETLVWLSRE 432 >gi|319639269|ref|ZP_07994020.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Neisseria mucosa C102] gi|317399453|gb|EFV80123.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Neisseria mucosa C102] Length = 441 Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 52/179 (29%), Positives = 83/179 (46%), Gaps = 23/179 (12%) Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 FTQ NA +N M+ + +G+ + +L+CG GNFSL LA+ V+ +E A V+ Sbjct: 271 FTQINAQLNEVMVARAVRLLNPQKGERIADLFCGLGNFSLPLAKSGASVVGIEGADYLVD 330 Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDID---IHSY-RFKTIFVDPPR 301 AR N N + F+ A L D D + S+ +F + +DPPR Sbjct: 331 RARENARLNRC-------AENMTFSVA--------DLFDTDEKTVESWGKFDKMLLDPPR 375 Query: 302 SGLDDATVGMVQAY--PHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHME 357 SG + + + I+Y+SCNP + RD +L + + + + F T H+E Sbjct: 376 SGAYAVVKSLHKPFLPQKIVYVSCNPSTFARDAGVLVDKGYKFKAAGIMNMFAQTSHVE 434 >gi|242221160|ref|XP_002476334.1| predicted protein [Postia placenta Mad-698-R] gi|220724415|gb|EED78459.1| predicted protein [Postia placenta Mad-698-R] Length = 445 Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 58/230 (25%), Positives = 99/230 (43%), Gaps = 32/230 (13%) Query: 153 GRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA-----TK 207 G + +C+ R V T Y I SF Q N + + + +V A Sbjct: 228 GHTLEKHVCVTDHKATVRERVGDNTFEY--IAGSFFQNNNSVLLPLTSYVRDAIFAHHPS 285 Query: 208 GIQGD-----LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262 G L++ YCG+G F++ LAR F +V +E+++ S+ A N N + + Sbjct: 286 GPTAPPRPTHLVDAYCGSGLFAITLARSFQKVAGIELSEDSIRCATRNAQLNDIPPDQCS 345 Query: 263 RMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH--ILY 320 MS + ++F R + + + +DPPR G D + + + ++Y Sbjct: 346 FMSG-DAANIFATVQDFPRDQTV---------LIIDPPRKGTDAKFIDQLLEFQGALVVY 395 Query: 321 ISCNPDSLCRDL-SILSTT-------HTIERLALFDQFPYTRHMECGVLL 362 +SCN + RD+ +IL + + +E L FD FP T H+E +L Sbjct: 396 VSCNVHTQARDVGTILRKSEARGGRRYVMESLVGFDLFPQTAHVESVAVL 445 >gi|148988481|ref|ZP_01819928.1| RNA methyltransferase, TrmA family protein [Streptococcus pneumoniae SP6-BS73] gi|147926162|gb|EDK77236.1| RNA methyltransferase, TrmA family protein [Streptococcus pneumoniae SP6-BS73] Length = 543 Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 40/155 (25%), Positives = 71/155 (45%), Gaps = 15/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ Y G G L +A+H V VE+ +VE ++ N + N + N V +++ + Sbjct: 308 IIDAYSGIGTIGLSVAKHVKEVYGVELIPEAVENSQKNASLNKITNAHYVCDTAENAMKK 367 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV--GMVQAYPHILYISCNPDSLCR 330 +E + I VDPPR GL ++ + I YISCN ++ R Sbjct: 368 WLKE------------GIQPTVILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMAR 415 Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364 D+ + + ++++ D FP T H+E LL + Sbjct: 416 DIKLYQELGYELKKVQPVDLFPQTHHVETVALLSK 450 >gi|322491461|emb|CBZ26733.1| conserved hypothetical protein [Leishmania mexicana MHOM/GT/2001/U1103] Length = 604 Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 44/166 (26%), Positives = 73/166 (43%), Gaps = 20/166 (12%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 LL+L G G L L++H RV+ +E+ + +V AR N N + N + + + Sbjct: 406 LLDLCSGTGTIGLTLSKHVKRVIGIELVESAVANARRNAQQNSITNAEFHCGRVEHLLPS 465 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHI---LYISCNPDSLC 329 + DI + +DPPR+G++ + ++ I +YISC +L Sbjct: 466 VISGLPAEDRGDI--------VVVLDPPRAGVNSTVLKWIRGMETIRRVVYISCEQKALE 517 Query: 330 RDLSILSTTHT---------IERLALFDQFPYTRHMECGVLLVRKP 366 RD L+ T + FD FP+T H+E +L R+P Sbjct: 518 RDCPGLTKPSTKAYRGTPFEVTAGFAFDLFPHTHHVEMVAVLTRRP 563 >gi|168491923|ref|ZP_02716066.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae CDC0288-04] gi|221231781|ref|YP_002510933.1| RNA methyltransferase [Streptococcus pneumoniae ATCC 700669] gi|183573799|gb|EDT94327.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae CDC0288-04] gi|220674241|emb|CAR68776.1| putative RNA methyltransferase [Streptococcus pneumoniae ATCC 700669] Length = 543 Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 40/155 (25%), Positives = 71/155 (45%), Gaps = 15/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ Y G G L +A+H V VE+ +VE ++ N + N + N V +++ + Sbjct: 308 IIDAYSGIGTIGLSVAKHVKEVYGVELIPEAVENSQKNASLNKITNAHYVCDTAENAMKK 367 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV--GMVQAYPHILYISCNPDSLCR 330 +E + I VDPPR GL ++ + I YISCN ++ R Sbjct: 368 WLKE------------GIQPTVILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMAR 415 Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364 D+ + + ++++ D FP T H+E LL + Sbjct: 416 DIKLYQELGYELKKVQPVDLFPQTHHVETVALLSK 450 >gi|153792070|ref|NP_001093345.1| TRM2 tRNA methyltransferase 2 homolog A [Xenopus laevis] gi|148745595|gb|AAI42551.1| LOC100101284 protein [Xenopus laevis] Length = 612 Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 50/167 (29%), Positives = 81/167 (48%), Gaps = 29/167 (17%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +L++ CG G + LA+ +V+ +E+ + ++ A+ N N+++NV EF + Sbjct: 440 VLDVCCGTGTIGISLAKKVKKVVGIELCQEAIADAKANAQLNNLDNV--------EF-RC 490 Query: 273 MRREREFNRLKDIDIHSYRFKT--IFVDPPRSGLDDATVGMVQAYPH---ILYISCNPDS 327 + E F L I+SY F + VDPPR+GL + ++ H ++Y+SCNP + Sbjct: 491 GKAEDIFPTL----INSYTFPSPLAIVDPPRAGLHSKVIIAIRKAEHLKQLIYVSCNPKA 546 Query: 328 -------LCRDLSILSTT---HTIERLALFDQFPYTRHMECGVLLVR 364 LCR S I+ LA+ D FP T H E +L R Sbjct: 547 AMNNFVDLCRAPSNRVKGRPFRPIKALAV-DLFPQTPHFELVILFER 592 >gi|124487421|ref|NP_001074469.1| tRNA (uracil-5-)-methyltransferase homolog A isoform 1 [Mus musculus] Length = 613 Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 49/165 (29%), Positives = 82/165 (49%), Gaps = 25/165 (15%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +L++ CG G L LA RV+ +E+ + +VE AR N N ++NV+ +++ Sbjct: 426 VLDVCCGTGTIGLALAPKVKRVVGIELCQEAVEDARMNALTNELSNVEFHCGRAEDLVPG 485 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHI---LYISCNPDS-- 327 + +RL S++ + +DPPR+GL + ++ +I LY+SCNP + Sbjct: 486 L-----VSRLS-----SHQLVAV-LDPPRAGLHSKVILAIRKAENIKRLLYVSCNPRAAM 534 Query: 328 -----LCRDLS--ILSTT-HTIERLALFDQFPYTRHMECGVLLVR 364 LCR S + T H ++ +A+ D FP T H E +L R Sbjct: 535 GNFVDLCRAPSNRVKGTPFHPVKAVAV-DLFPQTPHCEMLILFER 578 >gi|15900900|ref|NP_345504.1| RNA methyltransferase [Streptococcus pneumoniae TIGR4] gi|111658257|ref|ZP_01408949.1| hypothetical protein SpneT_02000571 [Streptococcus pneumoniae TIGR4] gi|50401653|sp|Q97R12|Y1029_STRPN RecName: Full=Uncharacterized RNA methyltransferase SP_1029 gi|14972502|gb|AAK75144.1| RNA methyltransferase, TrmA family [Streptococcus pneumoniae TIGR4] Length = 543 Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 40/155 (25%), Positives = 71/155 (45%), Gaps = 15/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ Y G G L +A+H V VE+ +VE ++ N + N + N V +++ + Sbjct: 308 IIDAYSGIGTIGLSVAKHVKEVYGVELIPEAVENSQKNASLNKITNAHYVCDTAENAMKK 367 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV--GMVQAYPHILYISCNPDSLCR 330 +E + I VDPPR GL ++ + I YISCN ++ R Sbjct: 368 WLKE------------GIQPTVILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMAR 415 Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364 D+ + + ++++ D FP T H+E LL + Sbjct: 416 DIKLYQELGYELKKVQPVDLFPQTHHVETVALLSK 450 >gi|330832578|ref|YP_004401403.1| RNA methyltransferase, TrmA family [Streptococcus suis ST3] gi|329306801|gb|AEB81217.1| RNA methyltransferase, TrmA family [Streptococcus suis ST3] Length = 452 Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 43/156 (27%), Positives = 73/156 (46%), Gaps = 15/156 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ Y G G L A+ V VE+ + +V ++ N A N ++NV V S++ Q Sbjct: 308 VIDAYSGIGTIGLSFAKQVKHVYGVEVVEKAVLDSQKNAARNGIDNVTYVCDSAESAMQK 367 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330 + + IFVDPPR GL ++ + P I+YISCN ++ R Sbjct: 368 WVAD------------GVKPTVIFVDPPRKGLTESFIKASTSVKPEKIVYISCNVATMAR 415 Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVRK 365 D+ + + + ++ D FP T H+E LL ++ Sbjct: 416 DIKLYEELGYKLTKVQPTDLFPNTHHVEVVSLLEKR 451 >gi|300704420|ref|YP_003746023.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Ralstonia solanacearum CFBP2957] gi|299072084|emb|CBJ43416.1| 23S rRNA (Uracil-5-)-methyltransferase rumA (23S rRNA(M-5-U1939)-methyltransferase) [Ralstonia solanacearum CFBP2957] Length = 448 Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 58/197 (29%), Positives = 89/197 (45%), Gaps = 27/197 (13%) Query: 175 GRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDR 233 G T+ ++ + FTQ N IN ++ VL GD LL+L+CG GNF+L +A Sbjct: 257 GITMPFKPTD--FTQVNHQINRVLMSRVLKLLDARPGDRLLDLFCGIGNFTLPMATRGRE 314 Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293 V+ +E ++ A N N ++ + T A R E + DI RF Sbjct: 315 VMGIEGSEALTTRALANAQHNGLD---------AKTTFACRNLFEVS-ADDIAALG-RFD 363 Query: 294 TIFVDPPRSG---LDDATVGMVQAYPH--------ILYISCNPDSLCRDLSIL--STTHT 340 VDPPR G + A + Q+ I+Y+SCNP +L RD +L + Sbjct: 364 RWLVDPPREGALAVSKALAELSQSGSEAAALLPGRIVYVSCNPATLARDAGLLVHEAGYR 423 Query: 341 IERLALFDQFPYTRHME 357 + + + FP+T H+E Sbjct: 424 LSGAGVVNMFPHTSHVE 440 >gi|15800611|ref|NP_286625.1| 23S rRNA methyluridine methyltransferase [Escherichia coli O157:H7 EDL933] gi|15830193|ref|NP_308966.1| 23S rRNA methyluridine methyltransferase [Escherichia coli O157:H7 str. Sakai] gi|168750044|ref|ZP_02775066.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli O157:H7 str. EC4113] gi|168756654|ref|ZP_02781661.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli O157:H7 str. EC4401] gi|168763290|ref|ZP_02788297.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli O157:H7 str. EC4501] gi|168767370|ref|ZP_02792377.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli O157:H7 str. EC4486] gi|168776401|ref|ZP_02801408.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli O157:H7 str. EC4196] gi|168779412|ref|ZP_02804419.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli O157:H7 str. EC4076] gi|168787081|ref|ZP_02812088.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli O157:H7 str. EC869] gi|168799858|ref|ZP_02824865.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli O157:H7 str. EC508] gi|195936904|ref|ZP_03082286.1| 23S rRNA methyluridine methyltransferase [Escherichia coli O157:H7 str. EC4024] gi|208814964|ref|ZP_03256143.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli O157:H7 str. EC4045] gi|208822279|ref|ZP_03262598.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli O157:H7 str. EC4042] gi|209399215|ref|YP_002269529.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli O157:H7 str. EC4115] gi|217325572|ref|ZP_03441656.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli O157:H7 str. TW14588] gi|254792055|ref|YP_003076892.1| 23S rRNA methyluridine methyltransferase [Escherichia coli O157:H7 str. TW14359] gi|261225509|ref|ZP_05939790.1| 23S rRNA m(5)U747 methyltransferase [Escherichia coli O157:H7 str. FRIK2000] gi|261258522|ref|ZP_05951055.1| 23S rRNA m(5)U747 methyltransferase [Escherichia coli O157:H7 str. FRIK966] gi|291281858|ref|YP_003498676.1| 23S rRNA (uracil-5-)-methyltransferase rumB (23S rRNA(M- 5-U747)-methyltransferase) [Escherichia coli O55:H7 str. CB9615] gi|20455386|sp|Q8X6Q5|RUMB_ECO57 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName: Full=23S rRNA(M-5-U747)-methyltransferase gi|226725402|sp|B5YSF1|RUMB_ECO5E RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName: Full=23S rRNA(M-5-U747)-methyltransferase gi|12513874|gb|AAG55235.1|AE005266_14 putative enzyme [Escherichia coli O157:H7 str. EDL933] gi|13360398|dbj|BAB34362.1| putative enzyme [Escherichia coli O157:H7 str. Sakai] gi|187768226|gb|EDU32070.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli O157:H7 str. EC4196] gi|188015750|gb|EDU53872.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli O157:H7 str. EC4113] gi|189002792|gb|EDU71778.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli O157:H7 str. EC4076] gi|189356313|gb|EDU74732.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli O157:H7 str. EC4401] gi|189363523|gb|EDU81942.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli O157:H7 str. EC4486] gi|189366522|gb|EDU84938.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli O157:H7 str. EC4501] gi|189373116|gb|EDU91532.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli O157:H7 str. EC869] gi|189377769|gb|EDU96185.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli O157:H7 str. EC508] gi|208731612|gb|EDZ80300.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli O157:H7 str. EC4045] gi|208737764|gb|EDZ85447.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli O157:H7 str. EC4042] gi|209160615|gb|ACI38048.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli O157:H7 str. EC4115] gi|209775338|gb|ACI85981.1| putative enzyme [Escherichia coli] gi|209775340|gb|ACI85982.1| putative enzyme [Escherichia coli] gi|209775342|gb|ACI85983.1| putative enzyme [Escherichia coli] gi|209775344|gb|ACI85984.1| putative enzyme [Escherichia coli] gi|209775346|gb|ACI85985.1| putative enzyme [Escherichia coli] gi|217321793|gb|EEC30217.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli O157:H7 str. TW14588] gi|254591455|gb|ACT70816.1| 23S rRNA m(5)U747 methyltransferase [Escherichia coli O157:H7 str. TW14359] gi|290761731|gb|ADD55692.1| 23S rRNA (uracil-5-)-methyltransferase rumB (23S rRNA(M- 5-U747)-methyltransferase) [Escherichia coli O55:H7 str. CB9615] gi|320192660|gb|EFW67301.1| 23S rRNA methyluridine methyltransferase [Escherichia coli O157:H7 str. EC1212] gi|320637725|gb|EFX07517.1| 23S rRNA methyluridine methyltransferase [Escherichia coli O157:H7 str. G5101] gi|320642849|gb|EFX12050.1| 23S rRNA methyluridine methyltransferase [Escherichia coli O157:H- str. 493-89] gi|320648306|gb|EFX16961.1| 23S rRNA methyluridine methyltransferase [Escherichia coli O157:H- str. H 2687] gi|320654143|gb|EFX22211.1| 23S rRNA methyluridine methyltransferase [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320659767|gb|EFX27323.1| 23S rRNA methyluridine methyltransferase [Escherichia coli O55:H7 str. USDA 5905] gi|320664237|gb|EFX31388.1| 23S rRNA methyluridine methyltransferase [Escherichia coli O157:H7 str. LSU-61] gi|326338251|gb|EGD62080.1| 23S rRNA methyluridine methyltransferase [Escherichia coli O157:H7 str. 1125] gi|326346228|gb|EGD69966.1| 23S rRNA methyluridine methyltransferase [Escherichia coli O157:H7 str. 1044] Length = 375 Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 43/154 (27%), Positives = 71/154 (46%), Gaps = 18/154 (11%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + +L+CG G F L A ++ +EIA ++ A+ + A + ++ + S +F A Sbjct: 237 MWDLFCGVGGFGLHCATPDMQLTGIEIALEAIACAKQSAAELGLTRLQFQALDSTQFATA 296 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCR 330 E + V+PPR G+ + A I+Y SCN ++ + Sbjct: 297 QGEVPEL---------------VLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAK 341 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D+ L + IER+ LFD FP+T H E LLV+ Sbjct: 342 DIRELPG-YRIERVQLFDMFPHTAHYEVLTLLVK 374 >gi|283833842|ref|ZP_06353583.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Citrobacter youngae ATCC 29220] gi|291070510|gb|EFE08619.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Citrobacter youngae ATCC 29220] Length = 375 Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 48/184 (26%), Positives = 82/184 (44%), Gaps = 19/184 (10%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 SF Q N + H+ + + D + +L+CG G F L A ++ +EIA + Sbjct: 208 QSFFQTNPVVAGHLYATARDWVRQLPVDHMWDLFCGVGGFGLHCATPQMKLTGIEIAPEA 267 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 + A+ + + N+ + S +F A + D+ + V+PPR G Sbjct: 268 IACAKQSAQELGLQNLHFQALDSTQFATAQ------GEVPDL---------VLVNPPRRG 312 Query: 304 LDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVL 361 + + A I+Y SCN ++ +D+ L + I+R+ LFD FP+T H E L Sbjct: 313 IGKPLCDFLSHMAPRFIIYSSCNAQTMAKDIHELPG-YRIDRVQLFDMFPHTAHYEVLTL 371 Query: 362 LVRK 365 L R+ Sbjct: 372 LSRR 375 >gi|219871204|ref|YP_002475579.1| 23S rRNA methyluridine methyltransferase [Haemophilus parasuis SH0165] gi|219691408|gb|ACL32631.1| 23S rRNA methyluridine methyltransferase [Haemophilus parasuis SH0165] Length = 389 Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 42/161 (26%), Positives = 73/161 (45%), Gaps = 23/161 (14%) Query: 213 LLELYCGNGNFSLVLARHFDR------VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266 L +L+CG G F L A + +EI+ ++ +A + + NVK + S Sbjct: 242 LWDLFCGVGGFGLHCANTLQTNNPNVALTGIEISASAIASATKSAQQLGLQNVKFASLDS 301 Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCN 324 +F E D+ + V+PPR G+ + P+++Y SCN Sbjct: 302 AQFAL-----NEQGTTPDL---------VIVNPPRRGIGKPLAEFINQLGSPYLIYSSCN 347 Query: 325 PDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 +++ +D + LS + ++++ LFD FP+T H E LV K Sbjct: 348 AETMAKDFASLSH-YELKKVQLFDMFPHTAHYEVLTFLVNK 387 >gi|148665095|gb|EDK97511.1| HpaII tiny fragments locus 9c, isoform CRA_e [Mus musculus] Length = 626 Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 49/165 (29%), Positives = 82/165 (49%), Gaps = 25/165 (15%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +L++ CG G L LA RV+ +E+ + +VE AR N N ++NV+ +++ Sbjct: 439 VLDVCCGTGTIGLALAPKVKRVVGIELCQEAVEDARMNALTNELSNVEFHCGRAEDLVPG 498 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHI---LYISCNPDS-- 327 + +RL S++ + +DPPR+GL + ++ +I LY+SCNP + Sbjct: 499 L-----VSRLS-----SHQLVAV-LDPPRAGLHSKVILAIRKAENIKRLLYVSCNPRAAM 547 Query: 328 -----LCRDLS--ILSTT-HTIERLALFDQFPYTRHMECGVLLVR 364 LCR S + T H ++ +A+ D FP T H E +L R Sbjct: 548 GNFVDLCRAPSNRVKGTPFHPVKAVAV-DLFPQTPHCEMLILFER 591 >gi|255074621|ref|XP_002500985.1| predicted protein [Micromonas sp. RCC299] gi|226516248|gb|ACO62243.1| predicted protein [Micromonas sp. RCC299] Length = 473 Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 52/186 (27%), Positives = 81/186 (43%), Gaps = 32/186 (17%) Query: 195 NVHMLEWVLAATK---GIQGD----LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA 247 N E ++AA + G GD +L+L+CG G L +A+ V E+ +V+ A Sbjct: 303 NTDQAEKLVAAVEDACGFSGDGTEVVLDLFCGVGTLGLCVAKKAKHVFGWEVVPEAVKDA 362 Query: 248 RYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307 N AN + N R + + L DI + DP R+G+D++ Sbjct: 363 ERNAEANGITNATFRRGDLAKLKAS---------LPGPDI-------VIADPARAGMDES 406 Query: 308 TVGMVQAYP--HILYISCNPDSLCRDLSILSTTHTIER-------LALFDQFPYTRHMEC 358 V ++++ I+Y+SCNP + RDL L E D FP+T H+E Sbjct: 407 LVKVLRSIGAERIVYVSCNPATQARDLLRLKGGDGGEGARYDVRYCTPVDMFPHTPHVET 466 Query: 359 GVLLVR 364 V+L R Sbjct: 467 VVVLDR 472 >gi|144574968|gb|AAZ43532.2| putative tRNA (Uracil-5-) -methyltransferase [Mycoplasma synoviae 53] Length = 432 Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 52/206 (25%), Positives = 95/206 (46%), Gaps = 29/206 (14%) Query: 175 GRTLI-------YRQIENSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSLV 226 G+T + + + +SF Q N + ++ + + + L++ YCG G ++ Sbjct: 240 GKTFVQRIGVNKFNVLNDSFFQVNGPVAKYLFDDLAELISKVNSKSLIDFYCGVGAITIY 299 Query: 227 LARHFDRV--LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284 LA F + E + +++ A N+ N +N KI + +F+ K Sbjct: 300 LATKFPELDFYGYEKNRFAIKIANENVLINKLNPEKIKFL-------------KFDLDKK 346 Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMV---QAYPHILYISCNPDSLCRDLSILS--TTH 339 ++ ++ IF DPPR+GL +V + +I YISCNP +L RD+ ++ + Sbjct: 347 LNDKVFQDSVIF-DPPRAGLSQNLKLLVLNSENVKNIFYISCNPRTLVRDVKEITEKSNF 405 Query: 340 TIERLALFDQFPYTRHMECGVLLVRK 365 I+ + +D FP T H+E V L R+ Sbjct: 406 KIKFIKGYDMFPQTHHIETLVWLSRE 431 >gi|182683977|ref|YP_001835724.1| RNA methyltransferase [Streptococcus pneumoniae CGSP14] gi|182629311|gb|ACB90259.1| RNA methyltransferase, TrmA family [Streptococcus pneumoniae CGSP14] Length = 541 Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 41/155 (26%), Positives = 71/155 (45%), Gaps = 15/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ Y G G L +A+H V VE+ +VE ++ N + N + N V +++ Sbjct: 308 IIDAYSGIGTIGLSVAKHVKEVYGVELIPEAVENSQKNASLNKITNAHYVCDTAE----- 362 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV--GMVQAYPHILYISCNPDSLCR 330 N +K + I VDPPR GL ++ + I YISCN ++ R Sbjct: 363 -------NAMKKWLKEGIQPTVILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMAR 415 Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364 D+ + + ++++ D FP T H+E LL + Sbjct: 416 DIKLYQELGYELKKVQPVDLFPQTHHVETVALLSK 450 >gi|284920712|emb|CBG33775.1| 23S rRNA (uracil-5-)-methyltransferase [Escherichia coli 042] Length = 375 Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 44/155 (28%), Positives = 74/155 (47%), Gaps = 18/155 (11%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + +L+CG G F L A ++ +EIA ++ A+ + A + ++ + S +F A Sbjct: 237 MWDLFCGVGGFGLHCATPDMQLTGIEIAPEAIACAKQSAAELGLTRLQFQALDSTQFATA 296 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCR 330 + E L + V+PPR G+ + A I+Y SCN ++ + Sbjct: 297 ---QGEVPGL------------VLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAK 341 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 D+ L + IER+ LFD FP+T H E LLV++ Sbjct: 342 DIRELPG-YRIERVQLFDMFPHTAHYEVLTLLVKQ 375 >gi|302821947|ref|XP_002992634.1| hypothetical protein SELMODRAFT_448840 [Selaginella moellendorffii] gi|300139598|gb|EFJ06336.1| hypothetical protein SELMODRAFT_448840 [Selaginella moellendorffii] Length = 636 Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 40/139 (28%), Positives = 63/139 (45%), Gaps = 13/139 (9%) Query: 200 EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259 EW A G L ++ CG G L LAR V+ +EI +V A N N+++N Sbjct: 429 EW---AGLGPNTLLFDICCGTGTIGLTLARKVGMVVGIEINADAVTDALTNAKLNNISNC 485 Query: 260 KIVRMSSKEFTQAMRREREF-------NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312 + V +++ + E E + D D + + VDPPRSGL + Sbjct: 486 RFVCAKAEDVVNKLLNEYEVLPEESSEDNAMDTDKKRFSNVVVIVDPPRSGLHPTVTKAL 545 Query: 313 QAYP---HILYISCNPDSL 328 + + ++Y+SCNPD+L Sbjct: 546 RVHSRLKRLVYVSCNPDTL 564 >gi|301020623|ref|ZP_07184698.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli MS 69-1] gi|300398599|gb|EFJ82137.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli MS 69-1] Length = 375 Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 42/155 (27%), Positives = 71/155 (45%), Gaps = 18/155 (11%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + +L+CG G F L A ++ +EIA ++ A+ + A + ++ + S +F A Sbjct: 237 MWDLFCGVGGFGLHCATPDMQLTGIEIAPEAIACAKQSAAELGLTRLQFQALDSTQFATA 296 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCR 330 E + V+PPR G+ + A I+Y SCN ++ + Sbjct: 297 QGEVPEL---------------VLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAK 341 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 D+ L + IER+ LFD FP+T H E LL ++ Sbjct: 342 DIRELPG-YRIERVQLFDMFPHTAHYEVLTLLAKQ 375 >gi|16128827|ref|NP_415380.1| 23S rRNA m(5)U747 methyltransferase [Escherichia coli str. K-12 substr. MG1655] gi|89107710|ref|AP_001490.1| 23S rRNA m(5)U747 methyltransferase [Escherichia coli str. K-12 substr. W3110] gi|170080518|ref|YP_001729838.1| 23S rRNA m(5)U747 methyltransferase [Escherichia coli str. K-12 substr. DH10B] gi|238900118|ref|YP_002925914.1| 23S rRNA m(5)U747 methyltransferase [Escherichia coli BW2952] gi|256023514|ref|ZP_05437379.1| 23S rRNA methyluridine methyltransferase [Escherichia sp. 4_1_40B] gi|301027629|ref|ZP_07190949.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli MS 196-1] gi|307137487|ref|ZP_07496843.1| 23S rRNA methyluridine methyltransferase [Escherichia coli H736] gi|331641380|ref|ZP_08342515.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli H736] gi|2501407|sp|P75817|RUMB_ECOLI RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName: Full=23S rRNA(M-5-U747)-methyltransferase gi|226725405|sp|B1X800|RUMB_ECODH RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName: Full=23S rRNA(M-5-U747)-methyltransferase gi|259495632|sp|C4ZY31|RUMB_ECOBW RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName: Full=23S rRNA(M-5-U747)-methyltransferase gi|1787083|gb|AAC73946.1| 23S rRNA m(5)U747 methyltransferase [Escherichia coli str. K-12 substr. MG1655] gi|4062444|dbj|BAA35573.1| 23S rRNA m(5)U747 methyltransferase [Escherichia coli str. K12 substr. W3110] gi|169888353|gb|ACB02060.1| 23S rRNA m(5)U747 methyltransferase [Escherichia coli str. K-12 substr. DH10B] gi|238859754|gb|ACR61752.1| 23S rRNA m(5)U747 methyltransferase [Escherichia coli BW2952] gi|260449994|gb|ACX40416.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli DH1] gi|299879231|gb|EFI87442.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli MS 196-1] gi|315135508|dbj|BAJ42667.1| 23S rRNA methyluridine methyltransferase [Escherichia coli DH1] gi|323942776|gb|EGB38941.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli E482] gi|323969577|gb|EGB64865.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli TA007] gi|331038178|gb|EGI10398.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli H736] Length = 375 Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 43/155 (27%), Positives = 71/155 (45%), Gaps = 18/155 (11%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + +L+CG G F L A ++ +EIA ++ A+ + A + ++ + S +F A Sbjct: 237 MWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATA 296 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCR 330 E + V+PPR G+ + A I+Y SCN ++ + Sbjct: 297 QGDVPEL---------------VLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAK 341 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 D+ L IER+ LFD FP+T H E LLV++ Sbjct: 342 DIRELPGFR-IERVQLFDMFPHTAHYEVLTLLVKQ 375 >gi|322698538|gb|EFY90307.1| tRNA (uracil-5-)-methyltransferase [Metarhizium acridum CQMa 102] Length = 569 Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 44/162 (27%), Positives = 75/162 (46%), Gaps = 23/162 (14%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN--VKIVRMSSKEFT 270 L++ Y G+G F++ L+ F ++IA S+ +AR N + N + + + + E Sbjct: 406 LIDAYSGSGLFTITLSSVFQHSTGIDIAADSIASARNNASLNGLGEDRCQFIAADAGELF 465 Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSL 328 +++ + + +DPPR G D +G ++ + ILY+SCN + Sbjct: 466 KSV-------------TYPADETVVVLDPPRKGCDADFLGQLRTFGPKRILYVSCNVHTQ 512 Query: 329 CRDLSIL------STTHTIERLALFDQFPYTRHMECGVLLVR 364 RD+ IL + IE L FD FP T H+E +L R Sbjct: 513 ARDVGILVRAEGDGARYDIESLVGFDFFPQTGHVEGVAILNR 554 >gi|124487423|ref|NP_001074468.1| tRNA (uracil-5-)-methyltransferase homolog A isoform 2 [Mus musculus] gi|74139903|dbj|BAE31790.1| unnamed protein product [Mus musculus] gi|74141122|dbj|BAE22119.1| unnamed protein product [Mus musculus] gi|74191426|dbj|BAE30293.1| unnamed protein product [Mus musculus] gi|74191631|dbj|BAE30387.1| unnamed protein product [Mus musculus] gi|74198831|dbj|BAE30643.1| unnamed protein product [Mus musculus] gi|74198924|dbj|BAE30683.1| unnamed protein product [Mus musculus] gi|74207465|dbj|BAE30911.1| unnamed protein product [Mus musculus] gi|74212582|dbj|BAE31030.1| unnamed protein product [Mus musculus] gi|74214625|dbj|BAE31153.1| unnamed protein product [Mus musculus] gi|74219662|dbj|BAE29598.1| unnamed protein product [Mus musculus] gi|74220248|dbj|BAE31303.1| unnamed protein product [Mus musculus] gi|74225302|dbj|BAE31584.1| unnamed protein product [Mus musculus] gi|74225530|dbj|BAE31672.1| unnamed protein product [Mus musculus] gi|74228782|dbj|BAE21880.1| unnamed protein product [Mus musculus] gi|148665091|gb|EDK97507.1| HpaII tiny fragments locus 9c, isoform CRA_a [Mus musculus] Length = 613 Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 49/165 (29%), Positives = 82/165 (49%), Gaps = 25/165 (15%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +L++ CG G L LA RV+ +E+ + +VE AR N N ++NV+ +++ Sbjct: 426 VLDVCCGTGTIGLALAPKVKRVVGIELCQEAVEDARMNALTNELSNVEFHCGRAEDLVPG 485 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHI---LYISCNPDS-- 327 + +RL S++ + +DPPR+GL + ++ +I LY+SCNP + Sbjct: 486 L-----VSRLS-----SHQLVAV-LDPPRAGLHSKVILAIRKAENIKRLLYVSCNPRAAM 534 Query: 328 -----LCRDLS--ILSTT-HTIERLALFDQFPYTRHMECGVLLVR 364 LCR S + T H ++ +A+ D FP T H E +L R Sbjct: 535 GNFVDLCRAPSNRVKGTPFHPVKAVAV-DLFPQTPHCEMLILFER 578 >gi|188495997|ref|ZP_03003267.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli 53638] gi|188491196|gb|EDU66299.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli 53638] Length = 375 Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 43/155 (27%), Positives = 71/155 (45%), Gaps = 18/155 (11%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + +L+CG G F L A ++ +EIA ++ A+ + A + ++ + S +F A Sbjct: 237 MWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATA 296 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCR 330 E + V+PPR G+ + A I+Y SCN ++ + Sbjct: 297 QGDVPEL---------------VLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAK 341 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 D+ L IER+ LFD FP+T H E LLV++ Sbjct: 342 DIRELPGFR-IERVQLFDMFPHTAHYEVLTLLVKQ 375 >gi|332342247|gb|AEE55581.1| 23S rRNA methyluridine methyltransferase RumB [Escherichia coli UMNK88] Length = 375 Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 43/155 (27%), Positives = 71/155 (45%), Gaps = 18/155 (11%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + +L+CG G F L A ++ +EIA ++ A+ + A + ++ + S +F A Sbjct: 237 MWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATA 296 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCR 330 E + V+PPR G+ + A I+Y SCN ++ + Sbjct: 297 QGDVPEL---------------VLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAK 341 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 D+ L IER+ LFD FP+T H E LLV++ Sbjct: 342 DIRELPGFR-IERVQLFDMFPHTAHYEVLTLLVKQ 375 >gi|281201614|gb|EFA75823.1| Dyp-type peroxidase family protein [Polysphondylium pallidum PN500] Length = 817 Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 43/153 (28%), Positives = 78/153 (50%), Gaps = 23/153 (15%) Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 F Q N +N M++ + + D + +L+CG+GNF+ +A++ +V+A++ A S+ Sbjct: 344 FIQVNKQVNKLMIDQAIEFLDLNKNDFVYDLFCGSGNFTFPIAKYCQQVVAIDYASNSL- 402 Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD 305 A+ N+ N +V ++ + ++ + + N+ I +DPPRSG + Sbjct: 403 -AKPNLGDN------VVSLNYNLYEYSIDYDAKCNK-------------ILLDPPRSGAE 442 Query: 306 DATVGMVQAYPHILYISCNPD-SLCRDLSILST 337 M + I+YISC+P SL RDL IL + Sbjct: 443 KVCNEMPDNFERIVYISCDPSGSLIRDLKILKS 475 >gi|146318257|ref|YP_001197969.1| SAM-dependent methyltransferase related to tRNA (uracil-5-)-methyltransferase [Streptococcus suis 05ZYH33] gi|146320451|ref|YP_001200162.1| SAM-dependent methyltransferase related to tRNA (uracil-5-)-methyltransferase [Streptococcus suis 98HAH33] gi|253751426|ref|YP_003024567.1| RNA methyltransferase [Streptococcus suis SC84] gi|253753327|ref|YP_003026468.1| RNA methyltransferase [Streptococcus suis P1/7] gi|253755843|ref|YP_003028983.1| RNA methyltransferase [Streptococcus suis BM407] gi|145689063|gb|ABP89569.1| SAM-dependent methyltransferase related to tRNA (uracil-5-)-methyltransferase [Streptococcus suis 05ZYH33] gi|145691257|gb|ABP91762.1| SAM-dependent methyltransferase related to tRNA (uracil-5-)-methyltransferase [Streptococcus suis 98HAH33] gi|251815715|emb|CAZ51315.1| putative RNA methyltransferase [Streptococcus suis SC84] gi|251818307|emb|CAZ56118.1| putative RNA methyltransferase [Streptococcus suis BM407] gi|251819573|emb|CAR45243.1| putative RNA methyltransferase [Streptococcus suis P1/7] gi|292558055|gb|ADE31056.1| tRNA (uracil-5-)-methyltransferase/TrmA [Streptococcus suis GZ1] Length = 452 Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 43/156 (27%), Positives = 73/156 (46%), Gaps = 15/156 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ Y G G L A+ V VE+ + +V ++ N A N ++NV V S++ Q Sbjct: 308 VIDAYSGIGTIGLSFAKQVKHVYGVEVVEKAVLDSQKNAARNGIDNVTYVCDSAESAMQK 367 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330 + + IFVDPPR GL ++ + P I+YISCN ++ R Sbjct: 368 WVAD------------GVKPTVIFVDPPRKGLTESFIKASTSVKPEKIVYISCNVATMAR 415 Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVRK 365 D+ + + + ++ D FP T H+E LL ++ Sbjct: 416 DIKLYEELGYKLTKVQPADLFPNTHHIEVVGLLEKR 451 >gi|74138627|dbj|BAE27134.1| unnamed protein product [Mus musculus] Length = 634 Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 49/165 (29%), Positives = 82/165 (49%), Gaps = 25/165 (15%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +L++ CG G L LA RV+ +E+ + +VE AR N N ++NV+ +++ Sbjct: 426 VLDVCCGTGTIGLALAPKVKRVVGIELCQEAVEDARMNALTNELSNVEFHCGRAEDLVPG 485 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHI---LYISCNPDS-- 327 + +RL S++ + +DPPR+GL + ++ +I LY+SCNP + Sbjct: 486 L-----VSRLS-----SHQLVAV-LDPPRAGLHSKVILAIRKAENIKRLLYVSCNPRAAM 534 Query: 328 -----LCRDLS--ILSTT-HTIERLALFDQFPYTRHMECGVLLVR 364 LCR S + T H ++ +A+ D FP T H E +L R Sbjct: 535 GNFVDLCRAPSNRVKGTPFHPVKAVAV-DLFPQTPHCEMLILFER 578 >gi|148665092|gb|EDK97508.1| HpaII tiny fragments locus 9c, isoform CRA_b [Mus musculus] Length = 606 Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 49/165 (29%), Positives = 82/165 (49%), Gaps = 25/165 (15%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +L++ CG G L LA RV+ +E+ + +VE AR N N ++NV+ +++ Sbjct: 419 VLDVCCGTGTIGLALAPKVKRVVGIELCQEAVEDARMNALTNELSNVEFHCGRAEDLVPG 478 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHI---LYISCNPDS-- 327 + +RL S++ + +DPPR+GL + ++ +I LY+SCNP + Sbjct: 479 L-----VSRLS-----SHQLVAV-LDPPRAGLHSKVILAIRKAENIKRLLYVSCNPRAAM 527 Query: 328 -----LCRDLS--ILSTT-HTIERLALFDQFPYTRHMECGVLLVR 364 LCR S + T H ++ +A+ D FP T H E +L R Sbjct: 528 GNFVDLCRAPSNRVKGTPFHPVKAVAV-DLFPQTPHCEMLILFER 571 >gi|304385720|ref|ZP_07368064.1| 23S rRNA (uracil-5-)-methyltransferase [Pediococcus acidilactici DSM 20284] gi|304328224|gb|EFL95446.1| 23S rRNA (uracil-5-)-methyltransferase [Pediococcus acidilactici DSM 20284] Length = 490 Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 41/153 (26%), Positives = 65/153 (42%), Gaps = 14/153 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ Y G G L LA + ++ ++ A N N + N + S+++ Sbjct: 346 IVDAYSGVGTIGLSLASEAKEIRGMDTIADAITDANENARLNSITNTRYEVGSAEKLLPK 405 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCR 330 +E ++ I VDPPR GLD + + A H Y+SCNP +L R Sbjct: 406 WLKE------------GFQPDGIVVDPPRVGLDRRLIDAILKSAPKHFAYVSCNPSTLAR 453 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363 DL L + +E + D FP T +E V L Sbjct: 454 DLVPLVKKYRVEYIQSIDMFPQTARVEAVVKLT 486 >gi|229495436|ref|ZP_04389171.1| 23S rRNA-methyltransferase RumA [Porphyromonas endodontalis ATCC 35406] gi|229317879|gb|EEN83777.1| 23S rRNA-methyltransferase RumA [Porphyromonas endodontalis ATCC 35406] Length = 475 Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 49/190 (25%), Positives = 87/190 (45%), Gaps = 17/190 (8%) Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVL 235 L +R SF Q N+ + + V + G+ G+ + +LY G G + +AR +V+ Sbjct: 295 LTFRIGPKSFYQTNSHQALELYR-VARSFAGLTGEEIVYDLYTGTGTIANFVARDAKKVV 353 Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295 +E ++E A N N ++N K+ R + D+ + Sbjct: 354 GIEYIPEAIEDAHLNSQVNKIDNTIFYAGDMKDILTPELIAR--HGAPDV---------V 402 Query: 296 FVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPY 352 DPPR+G+ + + A P I+Y+SCNP + RD ++L + + ++ D FP+ Sbjct: 403 ITDPPRAGMHPDVIKTLLGAAPPRIVYVSCNPATQARDAALLVEGGYRVLKVQPVDMFPH 462 Query: 353 TRHMECGVLL 362 T H+E +LL Sbjct: 463 THHVENVMLL 472 >gi|167855165|ref|ZP_02477936.1| hypothetical protein HPS_07413 [Haemophilus parasuis 29755] gi|167853710|gb|EDS24953.1| hypothetical protein HPS_07413 [Haemophilus parasuis 29755] Length = 389 Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 42/161 (26%), Positives = 74/161 (45%), Gaps = 23/161 (14%) Query: 213 LLELYCGNGNFSLVLARHFDR------VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266 L +L+CG G F L A + +EI+ ++ +A + + NVK + S Sbjct: 242 LWDLFCGVGGFGLHCAHTLQATNPNVALTGIEISASAIASATKSAQQLGLQNVKFASLDS 301 Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCN 324 +F A+ + L + V+PPR G+ + P+++Y SCN Sbjct: 302 AQF--ALNEQGTTPDL------------VIVNPPRRGIGKPLAEFINQLGSPYLIYSSCN 347 Query: 325 PDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 +++ +D + LS + ++++ LFD FP+T H E LV K Sbjct: 348 AETMAKDFASLSH-YELKKVQLFDMFPHTAHYEVLTFLVNK 387 >gi|116283517|gb|AAH27431.1| TRM2 tRNA methyltransferase 2 homolog A (S. cerevisiae) [Mus musculus] gi|116283883|gb|AAH38486.1| TRM2 tRNA methyltransferase 2 homolog A (S. cerevisiae) [Mus musculus] Length = 602 Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 49/165 (29%), Positives = 82/165 (49%), Gaps = 25/165 (15%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +L++ CG G L LA RV+ +E+ + +VE AR N N ++NV+ +++ Sbjct: 415 VLDVCCGTGTIGLALAPKVKRVVGIELCQEAVEDARMNALTNELSNVEFHCGRAEDLVPG 474 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHI---LYISCNPDS-- 327 + +RL S++ + +DPPR+GL + ++ +I LY+SCNP + Sbjct: 475 L-----VSRLS-----SHQLVAV-LDPPRAGLHSKVILAIRKAENIKRLLYVSCNPRAAM 523 Query: 328 -----LCRDLS--ILSTT-HTIERLALFDQFPYTRHMECGVLLVR 364 LCR S + T H ++ +A+ D FP T H E +L R Sbjct: 524 GNFVDLCRAPSNRVKGTPFHPVKAVAV-DLFPQTPHCEMLILFER 567 >gi|300947051|ref|ZP_07161272.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli MS 116-1] gi|301646296|ref|ZP_07246187.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli MS 146-1] gi|300453290|gb|EFK16910.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli MS 116-1] gi|301075499|gb|EFK90305.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli MS 146-1] gi|315619866|gb|EFV00385.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli 3431] Length = 358 Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 43/155 (27%), Positives = 71/155 (45%), Gaps = 18/155 (11%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + +L+CG G F L A ++ +EIA ++ A+ + A + ++ + S +F A Sbjct: 220 MWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATA 279 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCR 330 E + V+PPR G+ + A I+Y SCN ++ + Sbjct: 280 QGDVPEL---------------VLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAK 324 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 D+ L IER+ LFD FP+T H E LLV++ Sbjct: 325 DIRELPGFR-IERVQLFDMFPHTAHYEVLTLLVKQ 358 >gi|309701137|emb|CBJ00435.1| 23S rRNA (uracil-5-)-methyltransferase [Escherichia coli ETEC H10407] gi|323937966|gb|EGB34228.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli E1520] Length = 375 Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 43/155 (27%), Positives = 71/155 (45%), Gaps = 18/155 (11%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + +L+CG G F L A ++ +EIA ++ A+ + A + ++ + S +F A Sbjct: 237 MWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATA 296 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCR 330 E + V+PPR G+ + A I+Y SCN ++ + Sbjct: 297 QGDVPEL---------------VLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAK 341 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 D+ L IER+ LFD FP+T H E LLV++ Sbjct: 342 DIRELPGFR-IERVQLFDMFPHTAHYEVLTLLVKQ 375 >gi|300957062|ref|ZP_07169308.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli MS 175-1] gi|300316202|gb|EFJ65986.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli MS 175-1] Length = 358 Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 43/155 (27%), Positives = 71/155 (45%), Gaps = 18/155 (11%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + +L+CG G F L A ++ +EIA ++ A+ + A + ++ + S +F A Sbjct: 220 MWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATA 279 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCR 330 E + V+PPR G+ + A I+Y SCN ++ + Sbjct: 280 QGDVPEL---------------VLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAK 324 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 D+ L IER+ LFD FP+T H E LLV++ Sbjct: 325 DIRELPGFR-IERVQLFDMFPHTAHYEVLTLLVKQ 358 >gi|302837995|ref|XP_002950556.1| hypothetical protein VOLCADRAFT_60616 [Volvox carteri f. nagariensis] gi|300264105|gb|EFJ48302.1| hypothetical protein VOLCADRAFT_60616 [Volvox carteri f. nagariensis] Length = 206 Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 57/197 (28%), Positives = 84/197 (42%), Gaps = 20/197 (10%) Query: 178 LIYRQIENSFTQPN---AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRV 234 L +R SF Q N A + ++ G +L+LYCG G L LA RV Sbjct: 12 LKFRISPGSFFQTNTRQAEVLYDVVRRAAGLRPGAVDTVLDLYCGTGTIGLSLAGECRRV 71 Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294 L VE+ + ++E AR N A N ++NV+ + + A D+ Sbjct: 72 LGVEVLESAIEDARANAALNAISNVEF--LCADAPAAAAAASPTAVTTPDV--------- 120 Query: 295 IFVDPPRSG--LDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHT----IERLALFD 348 + VDP R G LD A+ ++Y+SCN + RDL L + + D Sbjct: 121 VIVDPARGGLTLDAASFLSRCGARRVVYVSCNVATQARDLDRLCNGSGAPFRLVSVQPVD 180 Query: 349 QFPYTRHMECGVLLVRK 365 FP+T H+E +L RK Sbjct: 181 MFPHTDHVETVAVLDRK 197 >gi|284799691|ref|ZP_05984596.2| 23S rRNA (uracil-5-)-methyltransferase RumA [Neisseria subflava NJ9703] gi|284797230|gb|EFC52577.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Neisseria subflava NJ9703] Length = 465 Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 52/179 (29%), Positives = 83/179 (46%), Gaps = 23/179 (12%) Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 FTQ NA +N M+ + +G+ + +L+CG GNFSL LA+ V+ +E A V+ Sbjct: 295 FTQINAQLNEVMVARAVRLLNPQKGERIADLFCGLGNFSLPLAKSGASVVGIEGAYYLVD 354 Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDID---IHSY-RFKTIFVDPPR 301 AR N N + F+ A L D D + S+ +F + +DPPR Sbjct: 355 RARENARLNRC-------AENMTFSVA--------DLFDTDEKTVESWGKFDKMLLDPPR 399 Query: 302 SGLDDATVGMVQAY--PHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHME 357 SG + + + I+Y+SCNP + RD +L + + + + F T H+E Sbjct: 400 SGAYAVVKSLHKPFLPQKIVYVSCNPSTFARDAGVLVDKGYKFKAAGIMNMFAQTSHVE 458 >gi|270290024|ref|ZP_06196250.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Pediococcus acidilactici 7_4] gi|270281561|gb|EFA27393.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Pediococcus acidilactici 7_4] Length = 490 Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 41/153 (26%), Positives = 65/153 (42%), Gaps = 14/153 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ Y G G L LA + ++ ++ A N N + N + S+++ Sbjct: 346 IVDAYSGVGTIGLSLASEAKEIRGMDTIADAITDANENARLNSITNARYEVGSAEKLLPK 405 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCR 330 +E ++ I VDPPR GLD + + A H Y+SCNP +L R Sbjct: 406 WLKE------------GFQPDGIVVDPPRVGLDRRLIDAILKSAPKHFAYVSCNPSTLAR 453 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363 DL L + +E + D FP T +E V L Sbjct: 454 DLVPLVKKYRVEYIQSIDMFPQTARVEAVVKLT 486 >gi|148998851|ref|ZP_01826287.1| RNA methyltransferase, TrmA family protein [Streptococcus pneumoniae SP11-BS70] gi|307067795|ref|YP_003876761.1| SAM-dependent methyltransferase [Streptococcus pneumoniae AP200] gi|147755278|gb|EDK62329.1| RNA methyltransferase, TrmA family protein [Streptococcus pneumoniae SP11-BS70] gi|301794164|emb|CBW36574.1| putative RNA methyltransferase [Streptococcus pneumoniae INV104] gi|306409332|gb|ADM84759.1| SAM-dependent methyltransferase [Streptococcus pneumoniae AP200] Length = 543 Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 40/155 (25%), Positives = 71/155 (45%), Gaps = 15/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ Y G G L +A+H V VE+ +VE ++ N + N + N V +++ + Sbjct: 308 VIDAYSGIGTIGLSVAKHVKEVYGVELIPEAVENSQKNASLNKITNAHYVCDTAENAMKK 367 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV--GMVQAYPHILYISCNPDSLCR 330 +E + I VDPPR GL ++ + I YISCN ++ R Sbjct: 368 WLKE------------GIQPTVILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMAR 415 Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364 D+ + + ++++ D FP T H+E LL + Sbjct: 416 DIKLYQELGYELKKVQPVDLFPQTHHVETVALLSK 450 >gi|161503956|ref|YP_001571068.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|189045735|sp|A9MIM3|RUMB_SALAR RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName: Full=23S rRNA(M-5-U747)-methyltransferase gi|160865303|gb|ABX21926.1| hypothetical protein SARI_02048 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 375 Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 43/154 (27%), Positives = 70/154 (45%), Gaps = 18/154 (11%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + +L+CG G F L A ++ +EIA ++ AR + A + + + S +F A Sbjct: 237 MWDLFCGVGGFGLHCATPQMQLTGIEIAPEAIACARQSAAELGLTRLHFQALDSTQFATA 296 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330 + + V+PPR G+ + Q P I+Y SCN ++ + Sbjct: 297 QGETPDL---------------VLVNPPRRGIGKPLCDYLAQIAPRFIIYSSCNAQTMAQ 341 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D+ L + I+R+ LFD FP+T H E LL R Sbjct: 342 DIRHLP-NYRIQRVQLFDMFPHTAHYEVLTLLCR 374 >gi|42525152|ref|NP_970532.1| RNA methyltransferase [Bdellovibrio bacteriovorus HD100] gi|51316634|sp|Q6MGU3|Y3828_BDEBA RecName: Full=Uncharacterized RNA methyltransferase Bd3828 gi|39577363|emb|CAE81186.1| hypothetical RNA methyltransferase [Bdellovibrio bacteriovorus HD100] Length = 393 Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 55/184 (29%), Positives = 82/184 (44%), Gaps = 29/184 (15%) Query: 186 SFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKP 242 F+Q N N +L L A G + +LY G GNF+ LA + ++ VE+ Sbjct: 218 GFSQVNRFQNEDLLRTALDWAGDGPYKKVYDLYAGAGNFTFPLAAKYAGSEIIGVELNPK 277 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302 VE AR I + K T M + R I + + +DPPR+ Sbjct: 278 LVERARSKI-------------TDKRMTYFMSDVETYMRRASIG----KDDLVVLDPPRA 320 Query: 303 GLDDATV-GMVQAYP-HILYISCNPDSLCRDLS-------ILSTTHTIERLALFDQFPYT 353 G + T+ + A P I+YISC+P SL RDL+ L + ++R+ F+ FP T Sbjct: 321 GASEYTMQTLAAAQPRKIIYISCHPVSLARDLNWFFAQTQKLGIKYKLDRVQTFEMFPQT 380 Query: 354 RHME 357 H+E Sbjct: 381 DHVE 384 >gi|261856300|ref|YP_003263583.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Halothiobacillus neapolitanus c2] gi|261836769|gb|ACX96536.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Halothiobacillus neapolitanus c2] Length = 379 Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 92/396 (23%), Positives = 146/396 (36%), Gaps = 72/396 (18%) Query: 6 LIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ 65 L D Y QL K+ R + + L I S +R +A+ + D + D Sbjct: 17 LADPYADQLQRKMARCQSALTGLGGVWLPIVPSAETAFRNKAKMVVCGDASSPCLGILDA 76 Query: 66 QTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-------------LRAKLFQIDYL-- 110 G L N + T EPL ++ + ++ YL Sbjct: 77 DDD----------GIDLSNCPLYPTAITEAFEPLKQMIRRLGIPPYDVKKRQGELKYLLI 126 Query: 111 -TSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQI--------------QLIGRA 155 S+ D +++ + R D W E RLR L + Q I Sbjct: 127 TVSEDDDSLMVRLVLR--SDIWIE---RLRADLSTLTADLPHLAVLSVNIQPVHQAILEG 181 Query: 156 NKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML----EWVLAATKGIQG 211 + I DR E LTV L + SF Q N + + WV A + Sbjct: 182 EQEVILTDR----ETLTVHLNGLPFHLRPKSFFQTNTRVAEQLYATARSWV-AEVAPVH- 235 Query: 212 DLLELYCGNGNFSLVLARHF-DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270 + +L+CG G F+L A +V +EI+ ++ +A+ + + NV + + EF Sbjct: 236 -MWDLFCGVGGFALHCADVIPGQVTGIEISAEAIASAQQSALELGLKNVSFHALGANEFI 294 Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSL 328 + L + V+PPR GL + ++Y SCNP+SL Sbjct: 295 DQAVSLPQMPAL------------VVVNPPRRGLGVGLCAFLDESVVQTVIYSSCNPESL 342 Query: 329 CRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 RDL ++ + + +FD FP+T H E +LVR Sbjct: 343 ARDLVMMPGFELV-KAQVFDLFPHTAHSEVLAMLVR 377 >gi|118465758|ref|YP_882757.1| RNA methyltransferase [Mycobacterium avium 104] gi|118167045|gb|ABK67942.1| putative RNA methyltransferase [Mycobacterium avium 104] Length = 395 Score = 62.8 bits (151), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 55/191 (28%), Positives = 86/191 (45%), Gaps = 37/191 (19%) Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD---RVLA 236 YR + + QP AG M W +LY G G F+ L RVL+ Sbjct: 236 YRALVLDWAQPGAG----MTAW-------------DLYGGAGVFAAALGEAVGESGRVLS 278 Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296 V+ ++ S AAR +A ++ V++ + +A+ +R D+ + Sbjct: 279 VDTSRASTRAARAALA-----DLPQVQVVTDSVRRALAAQRTPALQADVAV--------- 324 Query: 297 VDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSI-LSTTHTIERLALFDQFPYT 353 +DPPR+G + + A P I++I C S RD+ I L +T+E++ +FD FP T Sbjct: 325 LDPPRAGAGREVIDSLSAAGVPRIVHIGCEAASFARDMGIYLGHGYTVEKIRVFDAFPLT 384 Query: 354 RHMECGVLLVR 364 H EC LL R Sbjct: 385 HHSECVALLTR 395 >gi|145513256|ref|XP_001442539.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124409892|emb|CAK75142.1| unnamed protein product [Paramecium tetraurelia] Length = 559 Score = 62.8 bits (151), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 66/294 (22%), Positives = 123/294 (41%), Gaps = 31/294 (10%) Query: 87 MIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARK 146 M+ + + R + LL + D L Q + A+V L ++ E +++ +H+ K Sbjct: 272 MLSVRKSDRTKQLLISVSINKDNL-QQDEYAVVCDELMTLFSTSYGEFSLQGLLLMHSNK 330 Query: 147 YQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAAT 206 L A+ TKI Y E + + Y N+F+Q + + + ++ Sbjct: 331 LGQDLASSADDTKILFGNSYYQEIILDKKINISY----NAFSQNHTPQCDKLYQVIIDLC 386 Query: 207 KGIQ-GDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265 K + L+L G+G + ++ +LA+E+ K S E A N N++ N +I+ Sbjct: 387 KNKKITKFLDLCAGSGTIGICVSDQIQDILAIEMNKSSCEDACENYKLNNLQNCQIICSK 446 Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIF---VDPPRSGLDDATVGMV---QAYPHIL 319 ++ + + + D+ S+ K +DPPR+G+ + + + + HI+ Sbjct: 447 VEDVIKKVAQ----------DLKSFEGKQQLMACLDPPRAGVLNNVIEAIRTCKGIDHII 496 Query: 320 YISCNPDSLCRDLSILSTTHTIERLA---------LFDQFPYTRHMECGVLLVR 364 Y+SC+P + +L L + A L D FP T H E L R Sbjct: 497 YVSCSPPQVIDNLIQLCLPQCKKNKAPGFKLVNVTLVDMFPQTSHFEAVFYLER 550 >gi|317403057|gb|EFV83592.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Achromobacter xylosoxidans C54] Length = 501 Score = 62.8 bits (151), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 56/208 (26%), Positives = 89/208 (42%), Gaps = 33/208 (15%) Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGN 222 RD + + G + YR + FTQ N IN M+ L + D + +L+CG GN Sbjct: 241 RDALTYTMPEFGLRMPYRPTD--FTQVNHAINRAMVSRALQLLEVQPTDRVADLFCGLGN 298 Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282 F+L LA + VE +K + A + AA H + F L Sbjct: 299 FTLPLATQGREAVGVEGSKALTDRA-HEAAARH----------------GLGERTSFATL 341 Query: 283 K--DIDIHSYR----FKTIFVDPPRSGLDDATVGMVQAYPH-----ILYISCNPDSLCRD 331 ++D+ R F + +DPPR G + Q I+Y+SCNP +L RD Sbjct: 342 NLFEVDVEWLRGLGFFDRMLIDPPREGAQAVAQALSQLKAEERPRRIVYVSCNPATLARD 401 Query: 332 LSIL--STTHTIERLALFDQFPYTRHME 357 +I+ + ++ + + FP+T H+E Sbjct: 402 AAIMVHEGGYLLKSAGVINMFPHTGHVE 429 >gi|312796086|ref|YP_004029008.1| 23S rRNA m(5)U 1939 methyltransferase [Burkholderia rhizoxinica HKI 454] gi|312167861|emb|CBW74864.1| 23S rRNA m(5)U 1939 methyltransferase (EC 2.1.1.-) [Burkholderia rhizoxinica HKI 454] Length = 507 Score = 62.8 bits (151), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 51/184 (27%), Positives = 80/184 (43%), Gaps = 25/184 (13%) Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 FTQ N IN ++ + + D +L+L+CG GNF+L LAR V+ +E + + Sbjct: 328 FTQVNHQINRVLVGRAVRLLAPARTDRVLDLFCGLGNFTLPLARRAREVVGIEGSDALTQ 387 Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY-RFKTIFVDPPRSGL 304 A+ N N + M R + D+ + RF +DPPR G Sbjct: 388 RAQANARVNGLEARTSFAM------------RNLFEVGAADLRALGRFDKFLIDPPREGA 435 Query: 305 --------DDATVGMVQAYP-HILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYT 353 + A G P I+Y+SCNP +L RD +L + + + + FP+T Sbjct: 436 LAVAKALGELAQTGDAACLPGRIVYVSCNPATLARDAGLLVHEAGYRLVGAGVVNMFPHT 495 Query: 354 RHME 357 H+E Sbjct: 496 SHVE 499 >gi|158300145|ref|XP_320147.4| AGAP012408-PA [Anopheles gambiae str. PEST] gi|157013016|gb|EAA00138.4| AGAP012408-PA [Anopheles gambiae str. PEST] Length = 577 Score = 62.8 bits (151), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 44/166 (26%), Positives = 76/166 (45%), Gaps = 18/166 (10%) Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271 +L++ CG G L ARH +VL V+I + ++E A++N N + N +S + Sbjct: 392 SILDICCGTGTIGLCFARHCKQVLGVDIVEQAIEDAKHNAQKNGIENCSFFAGNSDDLIM 451 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV---QAYPHILYISCNPDS- 327 ++ R N + D + VDPPR+GL ++ + + ++Y+SC+P S Sbjct: 452 SLIRHA--NIMPD----QHESLIAIVDPPRAGLHIRSITQLRNARGLDKLVYVSCSPQSA 505 Query: 328 ------LCRDLS--ILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 L R S + ++ D FP+T H E +L R+ Sbjct: 506 IKNWVDLMRPCSKQLRGEPFVAKKAMAVDLFPHTPHTELVILFERE 551 >gi|241688185|ref|XP_002412851.1| tRNA uracil-5-methyltransferase, putative [Ixodes scapularis] gi|215506653|gb|EEC16147.1| tRNA uracil-5-methyltransferase, putative [Ixodes scapularis] Length = 399 Score = 62.8 bits (151), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 55/203 (27%), Positives = 79/203 (38%), Gaps = 26/203 (12%) Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNFSLVLARHFDRVLA 236 L +R SF Q N+ + M + V Q LL++ CG G L +AR V Sbjct: 208 LRFRLSPESFFQVNSAVAGFMYDAVRQMLDCNQHSTLLDICCGTGTIGLTMARGIHSVFG 267 Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296 ++ + +VE A YN N + N + V ++ MR E L + Sbjct: 268 MDASSQAVEDASYNAQLNGITNARFVAGRAEHLVPNMRNEFFAEELCAV----------- 316 Query: 297 VDPPRSGLDDATVGMVQAYPHI---LYISCNPDS--------LCRDLS---ILSTTHTIE 342 V+P R GL + ++ Y I +YISC P+ LCR +L Sbjct: 317 VNPGRGGLSSKAIRAMREYKQIKRLVYISCKPEGVAQDNFVQLCRSTGRSRLLGPPFRPL 376 Query: 343 RLALFDQFPYTRHMECGVLLVRK 365 D FP TRH E +L R Sbjct: 377 LACPVDMFPQTRHCELIMLFGRS 399 >gi|71064920|ref|YP_263647.1| 23S rRNA 5-methyluridine methyltransferase [Psychrobacter arcticus 273-4] gi|123649629|sp|Q4FUU5|RUMA_PSYA2 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|71037905|gb|AAZ18213.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Psychrobacter arcticus 273-4] Length = 512 Score = 62.8 bits (151), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 54/190 (28%), Positives = 86/190 (45%), Gaps = 26/190 (13%) Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLAR---HFDR 233 L + I FTQ N +N M + G+ +L+L+ G GNFSL LAR Sbjct: 329 LTFEFIPTDFTQVNLSVNRQMTKLACDLLDLKAGERVLDLFSGLGNFSLPLARLVGETGS 388 Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293 V+ VE ++ A N N +NN + ++Q + + D + F Sbjct: 389 VVGVEGSEAMTIRAADNARRNGINNTEF-------YSQDLTHD-----CTDKPWANQGFD 436 Query: 294 TIFVDPPRSGLDDATVGMVQAYPH-----ILYISCNPDSLCRDL-SILSTTHTIERLALF 347 + +DPPRSG + ++Q P I+Y+SCNP +L RD ++L + + + Sbjct: 437 ALLIDPPRSGAWE----IMQYLPKFNAERIVYVSCNPATLARDTKALLEQGYRLTHAGVM 492 Query: 348 DQFPYTRHME 357 D F +T H+E Sbjct: 493 DMFCHTGHVE 502 >gi|316973227|gb|EFV56847.1| putative HpaII tinys locus 9c protein [Trichinella spiralis] Length = 490 Score = 62.8 bits (151), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 51/209 (24%), Positives = 92/209 (44%), Gaps = 33/209 (15%) Query: 173 VAGRTLIYRQIEN--------SFTQPN-AGINVHMLEWVLAATKGIQGD---LLELYCGN 220 + G +Y I+N SF Q N AG V + + + +Q D LL++ CG Sbjct: 278 LGGCPHVYETIDNMHFRISPYSFFQVNTAGCEV-LYKTLFELCASVQVDHSLLLDICCGT 336 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G + LAR F++V+ +E +P+V+ A +N+ N N +E + Sbjct: 337 GTIGIYLARLFEKVIGIESVEPAVKDACHNMIVNEQFNCDFQAGKVEELLPKL------- 389 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP---HILYISCNPDS-------LCR 330 LK+ ++ ++ +DPPR G+ + ++ + H+ Y+SC+ + LC+ Sbjct: 390 -LKESNVEKWKTCVAVLDPPRGGVSGRVIAALRCHEPIHHLFYVSCDVQAAEKNFVDLCK 448 Query: 331 DLS--ILSTTHTIERLALFDQFPYTRHME 357 S + R+ D FP+T+ E Sbjct: 449 RASKRYPGPPFRLLRMIPVDMFPHTKLFE 477 >gi|269958068|ref|YP_003327857.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Xylanimonas cellulosilytica DSM 15894] gi|269306749|gb|ACZ32299.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Xylanimonas cellulosilytica DSM 15894] Length = 411 Score = 62.8 bits (151), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 45/155 (29%), Positives = 68/155 (43%), Gaps = 8/155 (5%) Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271 L +LYCG G F+L A V +EI+ +V +A+ A + M+ F Sbjct: 262 SLWDLYCGVGGFALTCAAPGRAVTGIEISAEAVASAQVTRAELEATDGGPAAMAGVRFAA 321 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLC 329 D+ + + V+PPR G+ A +++ +LY SCN D+L Sbjct: 322 GDATAFALG-CDPADVP----ELVIVNPPRRGIGPALADWLESSSARWVLYSSCNADTLA 376 Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 RDL + + ++ L D FP TRH E LL R Sbjct: 377 RDLERMPSLRP-AKVRLLDMFPQTRHYEVLTLLER 410 >gi|116326897|ref|YP_796617.1| tRNA (uracil-5-)-methyltransferase [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116329872|ref|YP_799590.1| tRNA (uracil-5-)-methyltransferase [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116119641|gb|ABJ77684.1| tRNA (uracil-5-)-methyltransferase [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116123561|gb|ABJ74832.1| tRNA (uracil-5-)-methyltransferase [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 417 Score = 62.8 bits (151), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 54/201 (26%), Positives = 92/201 (45%), Gaps = 19/201 (9%) Query: 169 ERLTVAGRTLIYRQIE-NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVL 227 E+++V I +I+ F+Q N + LE + Q +LELYCG+G ++ L Sbjct: 230 EKISVPELKEIVWEIQAGGFSQINRYLVASWLEKIFELVPENQDRILELYCGSGLIAIAL 289 Query: 228 ARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDI 287 + + E + SV+ A+ N N + + + E + ID Sbjct: 290 QSKTKKWIGYEFSLNSVKQAKKNAQRNGFYSCDF---------KTLNLETNW-----IDS 335 Query: 288 HSYRFKTIFV-DPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCRDLS-ILSTTHTIER 343 + + ++ +PPR+GL + +++ P LY SCN +L RDLS IL+ + + Sbjct: 336 EEALYSSFWIMNPPRAGLSKKVLQTLIEKNPRGFLYSSCNHTTLARDLSLILNGNYRLSN 395 Query: 344 LALFDQFPYTRHMECGVLLVR 364 + L D FP T+H E V + R Sbjct: 396 VTLVDFFPRTKHFEVIVKVER 416 >gi|118089359|ref|XP_420190.2| PREDICTED: similar to CXorf34 protein [Gallus gallus] Length = 478 Score = 62.8 bits (151), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 59/204 (28%), Positives = 88/204 (43%), Gaps = 28/204 (13%) Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVL 235 L +R ++F Q N +L V+ GD LL++ CG G L LARH +V+ Sbjct: 286 LRFRISPDAFFQVNTS-GAEVLYRVVRELSQAAGDTVLLDVCCGTGTIGLSLARHVSKVI 344 Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295 VEI + ++E AR+N A N ++N + ++ A+ E R Sbjct: 345 GVEIVQKAIEDARWNAAFNGISNCEFHSGKAEAVIPALLSSWE----------DARPLVA 394 Query: 296 FVDPPRSGLDDATVGMV---QAYPHILYISCNPDS--------LCRDLSI---LSTTHTI 341 V+P R+G+ V + +A +LYISC P+ LC L Sbjct: 395 VVNPSRAGIHHRVVKAIRSCRAIRRLLYISCKPEGEAMRNFLELCCPPDPRKKLEGEPFA 454 Query: 342 ERLAL-FDQFPYTRHMECGVLLVR 364 LA+ D FP+T H E +LL R Sbjct: 455 PALAVPVDMFPHTAHCELVLLLTR 478 >gi|3183977|emb|CAA39515.1| protein Htf9C [Mus musculus] Length = 677 Score = 62.8 bits (151), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 48/165 (29%), Positives = 79/165 (47%), Gaps = 25/165 (15%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +L++ CG G L LA RV+ +E+ + +VE AR N N ++NV+ +++ Sbjct: 490 VLDVCCGTGTIGLALAPKVKRVVGIELCQEAVEDARMNALTNELSNVEFHCGRAEDLVPG 549 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHI---LYISCNPDS-- 327 + +RL + +DPPR+GL + ++ +I LY+SCNP + Sbjct: 550 L-----VSRLSSHQL------VAVLDPPRAGLHSKVILAIRKAENIKRLLYVSCNPRAAM 598 Query: 328 -----LCRDLS--ILSTT-HTIERLALFDQFPYTRHMECGVLLVR 364 LCR S + T H ++ +A+ D FP T H E +L R Sbjct: 599 GNFVDLCRAPSNRVKGTPFHPVKAVAV-DLFPQTPHCEMLILFER 642 >gi|288555150|ref|YP_003427085.1| RNA methyltransferase [Bacillus pseudofirmus OF4] gi|288546310|gb|ADC50193.1| RNA methyltransferase [Bacillus pseudofirmus OF4] Length = 471 Score = 62.8 bits (151), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 36/155 (23%), Positives = 74/155 (47%), Gaps = 15/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G L LA + V +++ + S+ AR N + ++ +++E+ Sbjct: 328 VVDAYCGVGTIGLWLADGAEEVRGMDVIEASIIDARVNADKHGYDHFTYEVGTAEEWLPK 387 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCR 330 +E ++ + VDPPR+G D+ + + ++Y+SCNP +L + Sbjct: 388 WVKE------------GWKPDVVIVDPPRTGCDETLLRTITGVKPKRVVYVSCNPSTLAK 435 Query: 331 DLSILSTT-HTIERLALFDQFPYTRHMECGVLLVR 364 D+ L T + ++ + D FP+T +E +L + Sbjct: 436 DVEYLRTKGYKVDNIQPVDMFPWTAQVESVTVLSK 470 >gi|309800304|ref|ZP_07694477.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus infantis SK1302] gi|308116088|gb|EFO53591.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus infantis SK1302] Length = 454 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 45/155 (29%), Positives = 78/155 (50%), Gaps = 15/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ Y G G L +A++ V VE+ +VE ++ N N++ N V +++ A Sbjct: 308 VIDAYSGIGTIGLSVAKYVKEVHGVEVIPEAVENSQKNAVLNNITNAHYVCDTAE---NA 364 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330 M+ N LK+ + I VDPPR GL ++ + VQ + I YISCN ++ R Sbjct: 365 MK-----NWLKE----GIQPTAILVDPPRKGLTESFIKASVQTGANRIAYISCNVATMAR 415 Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364 D+ + + ++++ D FP T H+E LL + Sbjct: 416 DIKLYQELGYELKKVQPVDLFPQTHHVEAVALLSK 450 >gi|163847509|ref|YP_001635553.1| (Uracil-5)-methyltransferase [Chloroflexus aurantiacus J-10-fl] gi|222525358|ref|YP_002569829.1| (Uracil-5)-methyltransferase [Chloroflexus sp. Y-400-fl] gi|163668798|gb|ABY35164.1| (Uracil-5)-methyltransferase [Chloroflexus aurantiacus J-10-fl] gi|222449237|gb|ACM53503.1| (Uracil-5)-methyltransferase [Chloroflexus sp. Y-400-fl] Length = 399 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 48/153 (31%), Positives = 72/153 (47%), Gaps = 16/153 (10%) Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274 +LY G G L LA+ RV VE SV+ A N N V+N+ + + + Sbjct: 258 DLYGGVGVIGLHLAQSAARVDCVESVAESVQLAHQNALMNKVSNIHPICADTLTYL---- 313 Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLD-DATVGMVQAYPH-ILYISCNPDSLCRDL 332 RE+ L + VDPPR+GL +++ P I+Y+SCNP + DL Sbjct: 314 REQPTGSLP----------VVVVDPPRTGLGLPVCQELIRIAPQRIVYVSCNPLTQVSDL 363 Query: 333 SILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 L + + I L +D FP+T H+E +L R+ Sbjct: 364 QHLQSAYRIVGLRGYDMFPHTPHVEVMAVLERR 396 >gi|325577786|ref|ZP_08148061.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Haemophilus parainfluenzae ATCC 33392] gi|325160531|gb|EGC72657.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Haemophilus parainfluenzae ATCC 33392] Length = 390 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 51/185 (27%), Positives = 79/185 (42%), Gaps = 31/185 (16%) Query: 193 GINVHMLEWV--LAATKGIQGDLLELYCGNGNFSLVLARHFD-------RVLAVEIAKPS 243 G+ +WV L TK L +L+CG G F L A+ + +EI+ + Sbjct: 226 GLYATAQDWVQDLPITK-----LWDLFCGVGGFGLHCAKALQDKHQQEVELTGIEISPSA 280 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 ++AA + +NNVK + + F + + V+PPR G Sbjct: 281 IQAATLSAQVLGLNNVKFQSLDAANFALTQDENKP--------------DLVIVNPPRRG 326 Query: 304 LDDATVGMV-QAYPH-ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVL 361 + + + PH ILY SC S+ +DL L T + + ++ LFD FP+T H E L Sbjct: 327 IGKELAEFLNEMQPHFILYSSCKAISMGKDLQHL-TNYKLTQIQLFDMFPHTAHYEALAL 385 Query: 362 LVRKP 366 L P Sbjct: 386 LKLNP 390 >gi|24380145|ref|NP_722100.1| putative RNA methyltransferase [Streptococcus mutans UA159] gi|50401574|sp|Q8DSK3|Y1779_STRMU RecName: Full=Uncharacterized RNA methyltransferase SMU_1779c gi|24378145|gb|AAN59406.1|AE015005_12 putative RNA methyltransferase [Streptococcus mutans UA159] Length = 459 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 42/155 (27%), Positives = 68/155 (43%), Gaps = 14/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L++ YCG G+ L A V ++I ++ A+ N RM Sbjct: 309 LIDAYCGVGSIGLAFANKVKSVRGMDIIPEAITDAKRNAE----------RMGYTNTYYE 358 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330 M + N + Y+ + VDPPR+GLD+ + + Y ++Y+SCN +L R Sbjct: 359 MGKAE--NVIPKWYKDGYQASALIVDPPRTGLDEKLLKTLLTYQPEKMVYVSCNVSTLAR 416 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 DL L + + + D FP+T E V LV++ Sbjct: 417 DLVQLVKVYEVNYIQSVDMFPHTARTEAVVKLVKR 451 >gi|47227704|emb|CAG09701.1| unnamed protein product [Tetraodon nigroviridis] Length = 586 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 48/164 (29%), Positives = 76/164 (46%), Gaps = 23/164 (14%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +L++ CG G + LA+ +V+ +E+ + +VE A+ N N + NV EF Sbjct: 428 VLDVCCGTGTIGISLAKRVKKVIGIELCQEAVEDAKVNAQLNGLTNV--------EF-HC 478 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH---ILYISCNPDS-- 327 + E F + + + S T VDPPR+GL + ++ H ++Y++CN + Sbjct: 479 GKAEDVFPNILNAVVSSKV--TAIVDPPRAGLHSKVILAIRKAEHLKRLVYVACNAKAAM 536 Query: 328 -----LCRDLS--ILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 LCR S + T R D FP T HME +LL R Sbjct: 537 NNFIDLCRAPSNRVHGTPFRPVRAMAVDLFPQTMHMEMLLLLER 580 >gi|168240762|ref|ZP_02665694.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|194448777|ref|YP_002044912.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194407081|gb|ACF67300.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|205340264|gb|EDZ27028.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] Length = 375 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 42/154 (27%), Positives = 70/154 (45%), Gaps = 18/154 (11%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + +L+CG G F L A ++ +EIA ++ A+ + A + + + S +F A Sbjct: 237 MWDLFCGVGGFGLHCATPQMQLTGIEIAPEAIACAKQSAAELGLTRLHFQALDSTQFATA 296 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330 + + V+PPR G+ + Q P I+Y SCN ++ + Sbjct: 297 QGETPDL---------------VLVNPPRRGIGKPLCDYLAQMAPRFIIYSSCNAQTMAQ 341 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D+ L + I+R+ LFD FP+T H E LL R Sbjct: 342 DIRHLPN-YCIQRVQLFDMFPHTAHYEVLTLLCR 374 >gi|56414028|ref|YP_151103.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197362951|ref|YP_002142588.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|81360323|sp|Q5PGN2|RUMB_SALPA RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName: Full=23S rRNA(M-5-U747)-methyltransferase gi|226725414|sp|B5BBV5|RUMB_SALPK RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName: Full=23S rRNA(M-5-U747)-methyltransferase gi|56128285|gb|AAV77791.1| hypothetical RNA methyltransferase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197094428|emb|CAR59944.1| hypothetical RNA methyltransferase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 375 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 42/155 (27%), Positives = 71/155 (45%), Gaps = 18/155 (11%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + +L+CG G F L A ++ +EIA ++ A+ + A + + + S +F A Sbjct: 237 MWDLFCGVGGFGLHCATPQMQLTGIEIAPEAIACAKQSAAELGLTRLHFQALDSTQFATA 296 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330 + + V+PPR G+ + Q P I+Y SCN ++ + Sbjct: 297 QGETPDL---------------VLVNPPRRGIGKPLCDYLAQMAPRFIIYSSCNAQTMAQ 341 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 D+ L + I+R+ LFD FP+T H E LL R+ Sbjct: 342 DIRHLPN-YRIQRVQLFDMFPHTAHYEVLTLLCRQ 375 >gi|240949481|ref|ZP_04753821.1| 23S rRNA methyluridine methyltransferase [Actinobacillus minor NM305] gi|240296054|gb|EER46715.1| 23S rRNA methyluridine methyltransferase [Actinobacillus minor NM305] Length = 391 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 40/159 (25%), Positives = 71/159 (44%), Gaps = 23/159 (14%) Query: 215 ELYCGNGNFSLVLARHFDR------VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268 +L+CG G F L A+ + +EI+ ++ +A + + NV + S + Sbjct: 247 DLFCGVGGFGLHCAKALQETNPTVSLTGIEISASAIASATQSAEKLGLKNVTFASLDSAQ 306 Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPD 326 F E + D+ + V+PPR G+ A + P+++Y SCN Sbjct: 307 FAL-----NEKGSVPDL---------VIVNPPRRGIGKALAEYLNQLGSPYVIYSSCNAK 352 Query: 327 SLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 ++ D + + + ++ LFD FP+T H E LLV+K Sbjct: 353 TMAEDFASFDN-YALAKVQLFDMFPHTAHYEVLTLLVKK 390 >gi|152980877|ref|YP_001353823.1| 23S rRNA 5-methyluridine methyltransferase [Janthinobacterium sp. Marseille] gi|151280954|gb|ABR89364.1| SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Janthinobacterium sp. Marseille] Length = 457 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 62/267 (23%), Positives = 119/267 (44%), Gaps = 26/267 (9%) Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRD--ALHARKYQIQLIGRANKTKIC 161 L QI+ Q Q VT + R++ + + ++L+ LH ++ +Q G + + Sbjct: 189 LPQIELAIGQGAQEKVTAMVLRIMTELSADDEVKLKAFADLHQVQWWLQPAGPDSAYQFY 248 Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGN 220 + + L + ++ + FTQ N IN ++ L D + +L+CG Sbjct: 249 PTENNLHYALPEFNVKMPFKPTD--FTQVNHQINRVLVARALRLLDAQPTDRIADLFCGL 306 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 GNF+L +A V+ +E + E + N AN + + + +A + +F Sbjct: 307 GNFTLPIATQAREVVGIEGSTTLTERSLENAVANGLADK--TSFYCRNLFEA--KAEDFV 362 Query: 281 RLKDIDIHSYRFKTIFVDPPRSG---LDDATVGMVQAYP-----HILYISCNPDSLCRDL 332 L +F + +DPPR G + +A + ++ P I+Y+SCNP +L RD Sbjct: 363 ELG-------KFDRMLIDPPRDGALAVCEALSELGKSQPDLLPSRIVYVSCNPSTLARDA 415 Query: 333 SIL--STTHTIERLALFDQFPYTRHME 357 ++L + ++ + + FP+T H+E Sbjct: 416 AVLVNEGLYDLKNAGVINMFPHTSHVE 442 >gi|303232296|ref|ZP_07318994.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Atopobium vaginae PB189-T1-4] gi|302481619|gb|EFL44681.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Atopobium vaginae PB189-T1-4] Length = 458 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 49/155 (31%), Positives = 68/155 (43%), Gaps = 21/155 (13%) Query: 214 LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273 +LYCG G F+L LA V+ VE S+ + I N+ V S Sbjct: 319 FDLYCGAGTFTLPLADACMNVVGVEAQGTSINDLKRCIERESYTNITAVCGDSF------ 372 Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRD 331 REF D D+ I VDPPR+GL + + A I Y+SC+P +L RD Sbjct: 373 ---REFPH-TDADV-------IVVDPPRAGLAPEVIAKLNAQKARAIAYVSCDPITLSRD 421 Query: 332 LS--ILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 + + +T + D FP + H+EC LL R Sbjct: 422 IQRFCAAGVYTPVSIVPVDVFPQSFHVECVTLLER 456 >gi|300087865|ref|YP_003758387.1| maf protein [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299527598|gb|ADJ26066.1| maf protein [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 612 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 43/157 (27%), Positives = 77/157 (49%), Gaps = 20/157 (12%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ Y G F+ +LA +V+A+E + +V+ AR NI + NV+++ ++ Sbjct: 254 IIDAYAGVATFAALLAPRVKKVIAIEESSAAVKDARVNIKG--LANVELLEARTESVLP- 310 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCR 330 +L D + +DP R+G + ++ +P ++Y+SCNP++L R Sbjct: 311 -----HLGKLAD---------AVIIDPSRNGCHPGALRILNRHPASRLVYVSCNPEALGR 356 Query: 331 DLSILSTTH-TIERLALFDQFPYTRHMECGVLLVRKP 366 DL+ L+ IE + D FP T H+E V L P Sbjct: 357 DLATLTRGPWIIEDITPVDLFPQTYHVETVVTLKYDP 393 >gi|302023576|ref|ZP_07248787.1| RNA methyltransferase [Streptococcus suis 05HAS68] Length = 452 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 43/156 (27%), Positives = 73/156 (46%), Gaps = 15/156 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ Y G G L A+ V VE+ + +V ++ N A N ++NV V S++ Q Sbjct: 308 VIDAYSGIGTIGLSFAKQVKHVYGVEVVERAVLDSQKNAARNGIDNVTYVCDSAESAMQK 367 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330 + + IFVDPPR GL ++ + P I+YISCN ++ R Sbjct: 368 WVAD------------GVKPTVIFVDPPRKGLTESFIKASTSVKPEKIVYISCNVATMAR 415 Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVRK 365 D+ + + + ++ D FP T H+E LL ++ Sbjct: 416 DIKLYEELGYKLTKVQPADLFPNTHHIEVVGLLEKR 451 >gi|256375660|ref|YP_003099320.1| deoxyribonuclease/rho motif-related TRAM [Actinosynnema mirum DSM 43827] gi|255919963|gb|ACU35474.1| deoxyribonuclease/rho motif-related TRAM [Actinosynnema mirum DSM 43827] Length = 411 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 42/153 (27%), Positives = 73/153 (47%), Gaps = 14/153 (9%) Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274 +LY G G F+ VLA +VE+ + + A R A + ++ V+ ++ Sbjct: 268 DLYGGAGLFASVLAAQVGETGSVEVVESATNAVRDGQRA--LADLPQVKWHVGRVEDSVT 325 Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDL 332 R +R + + +DPPR G A + V A ++Y++C+P +L RD+ Sbjct: 326 RAPFTDRSPSV---------VVLDPPRKGAGAAVLDAVAARRPARVVYVACDPAALARDV 376 Query: 333 SILST-THTIERLALFDQFPYTRHMECGVLLVR 364 ++L+ + + +L FD FP T H+EC L R Sbjct: 377 ALLAGHGYRLAQLRAFDAFPMTHHVECVALFTR 409 >gi|290579884|ref|YP_003484276.1| putative RNA methyltransferase [Streptococcus mutans NN2025] gi|254996783|dbj|BAH87384.1| putative RNA methyltransferase [Streptococcus mutans NN2025] Length = 459 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 43/155 (27%), Positives = 68/155 (43%), Gaps = 14/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L++ YCG G+ L A V ++I ++ A+ N RM Sbjct: 309 LIDAYCGVGSIGLAFANKVKSVRGMDIIPEAITDAKRNAE----------RMGYTNTYYE 358 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330 M + N + Y+ + VDPPR+GLD+ + + Y ++YISCN +L R Sbjct: 359 MGKAE--NIIPKWYKDGYQASALIVDPPRTGLDEKLLKTLLTYQPEKMVYISCNVSTLAR 416 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 DL L + + + D FP+T E V LV++ Sbjct: 417 DLVQLVKIYEVNYIQSVDMFPHTARTEAVVKLVKR 451 >gi|319408217|emb|CBI81870.1| putative enzyme [Bartonella schoenbuchensis R1] Length = 414 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 46/158 (29%), Positives = 81/158 (51%), Gaps = 19/158 (12%) Query: 214 LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI--AANHVNNVKIVRMSSKEFTQ 271 ++L+ G G F+L +A+ + V AVE + E A N+ AA +K V ++ Sbjct: 269 VDLFSGAGTFTLRMAKTMN-VHAVE----NDETALANLEHAARFAFGLKTVTCEKRDL-- 321 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA-YPHILYISCNPDSLCR 330 RR L+ RF ++ DPPR+G + + + P ++ +SCNP + R Sbjct: 322 -FRRPLSAKELE-------RFDSVVFDPPRAGAKEQVCELAKTTIPRVVAVSCNPVTFAR 373 Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRKPS 367 DLSIL + +T+E++ DQF ++ H+E +L ++ + Sbjct: 374 DLSILVAGGYTVEKVIPIDQFLWSPHVEVVAILSKRKT 411 >gi|239787374|emb|CAX83850.1| SAM-dependent methyltransferase related to tRNA (Uracil-5-)-methyltransferase [uncultured bacterium] Length = 437 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 48/181 (26%), Positives = 80/181 (44%), Gaps = 21/181 (11%) Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246 F QP+ + V+A G+ G + +LY G G+FSL LA V AV+ Sbjct: 266 FLQPSREGEAAITAQVMAGLAGLDGPVADLYAGVGSFSLPLAACHP-VHAVD-------- 316 Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQA-MRREREFNRLKDIDIHSY-RFKTIFVDPPRSGL 304 H V ++ + + ER + + +H +F + +DPPR+G Sbjct: 317 -------GHAQAVAALKQAGDRIALGRLTTERRDLSKRPLLVHELKKFSGVVIDPPRAGA 369 Query: 305 DD--ATVGMVQAYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVL 361 + + M + +SCNP ++ RDLSIL + ++ + DQF +T H+E + Sbjct: 370 REQVTELAMAATVQKTVMVSCNPATMARDLSILINKGWRLDSVVPIDQFLWTPHLELTAI 429 Query: 362 L 362 L Sbjct: 430 L 430 >gi|253998673|ref|YP_003050736.1| 23S rRNA 5-methyluridine methyltransferase [Methylovorus sp. SIP3-4] gi|253985352|gb|ACT50209.1| RNA methyltransferase, TrmA family [Methylovorus sp. SIP3-4] Length = 457 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 59/204 (28%), Positives = 83/204 (40%), Gaps = 40/204 (19%) Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLA 236 L Y FTQ N IN ML + D + + +CG GNF+L +AR VL Sbjct: 258 LTYPFKPTEFTQVNPHINRVMLRRAMQLLGAQPQDRIADFFCGLGNFTLPIARSGATVLG 317 Query: 237 VE----IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR- 291 +E + +VE+A N A+ V RE + ++ + S Sbjct: 318 MEGSAALVARAVESASLNGLADQVE----------------YREADLFKMTPEALQSLGY 361 Query: 292 FKTIFVDPPRSG-------LDDATVGMVQAYP---------HILYISCNPDSLCRDLSIL 335 F +DPPR G L D G A P I+Y+SCNP +L RD +L Sbjct: 362 FDKWLIDPPRDGALELIKSLADVGRGEDGAMPVAPKVAGPERIVYVSCNPATLARDAGVL 421 Query: 336 STTHTIERLA--LFDQFPYTRHME 357 LA + + FP+T H+E Sbjct: 422 VNLKGYRLLAAGVINMFPHTSHVE 445 >gi|239918636|ref|YP_002958194.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Micrococcus luteus NCTC 2665] gi|281415146|ref|ZP_06246888.1| 23S rRNA methyluridine methyltransferase [Micrococcus luteus NCTC 2665] gi|239839843|gb|ACS31640.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Micrococcus luteus NCTC 2665] Length = 403 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 64/254 (25%), Positives = 106/254 (41%), Gaps = 24/254 (9%) Query: 129 DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIEN--- 185 DA R L D L AR ++ AN + D+ + +AG + ++ Sbjct: 157 DALRAAVPGLLDDLAARGTPAAVV-SANLLPEHVALPEGDKEIVLAGGPTLTMRLNGVGL 215 Query: 186 -----SFTQPNAGI--NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVE 238 F Q N + ++ A G+ +LYCG G F+ LAR R + Sbjct: 216 RLRPQGFFQTNTAVTEGLYATAAAWVAEAGLPATAWDLYCGVGGFAFHLARAGVRDV-WG 274 Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY-----RFK 293 + + A A + R S+ + T A+ F + + + S+ R Sbjct: 275 MESSAEAVAAARETAAELGLADRARFSAGDATSAL----SFGKRRAPEALSFEKRRARPD 330 Query: 294 TIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFP 351 + V+PPR G+ ++ P +LY SCNP +L +DL+ + + + + R+ +FD FP Sbjct: 331 AVVVNPPRRGIGAELADALEDSGVPTVLYSSCNPATLAQDLARMPS-YRVARVQVFDMFP 389 Query: 352 YTRHMECGVLLVRK 365 TRH E LL R+ Sbjct: 390 QTRHAEVLTLLTRR 403 >gi|163856855|ref|YP_001631153.1| 23S rRNA 5-methyluridine methyltransferase [Bordetella petrii DSM 12804] gi|163260583|emb|CAP42885.1| RNA methyltransferase [Bordetella petrii] Length = 458 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 55/206 (26%), Positives = 89/206 (43%), Gaps = 29/206 (14%) Query: 175 GRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDR 233 G ++ YR + FTQ N IN M+ L D + +L+CG GNF+L LA Sbjct: 252 GLSMPYRPTD--FTQVNHAINRAMVSRALMLLDVQPEDRVADLFCGLGNFTLPLATRGRE 309 Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR-- 291 + VE +K + R AA+ R ++ L ++D+ R Sbjct: 310 AVGVEGSKALTD--RALAAADRHGLAGRTRFATLN-------------LFEVDVDWLRGL 354 Query: 292 --FKTIFVDPPRSGLDDATVGMVQAYP-----HILYISCNPDSLCRDLSIL--STTHTIE 342 F + +DPPR G + P I+Y+SCNP +L RD +I+ + ++ Sbjct: 355 GYFDRMLIDPPREGAQAVAQALALLGPDERPRRIVYVSCNPATLARDAAIMVHEGGYVLK 414 Query: 343 RLALFDQFPYTRHMECGVLLVRKPSG 368 + + FP+T H+E + P+G Sbjct: 415 SAGVINMFPHTGHVESIAVFESLPAG 440 >gi|254459850|ref|ZP_05073266.1| 23S rRNA (uracil-5-)-methyltransferase [Rhodobacterales bacterium HTCC2083] gi|206676439|gb|EDZ40926.1| 23S rRNA (uracil-5-)-methyltransferase [Rhodobacteraceae bacterium HTCC2083] Length = 408 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 53/199 (26%), Positives = 90/199 (45%), Gaps = 25/199 (12%) Query: 176 RTLIYRQIENSFTQPNAGI----NVH----MLEWVLAATKGIQGDLLELYCGNGNFSLVL 227 R L Y+ + P G VH + VL A G +G ++L+ G+G F+L L Sbjct: 220 RNLPYQNFGAARVAPPPGAFLQATVHGQDALTAAVLDAVSGEKG--VDLFAGSGTFTLPL 277 Query: 228 ARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDI 287 A H++ ++A+E KP + A + +K V +++ RR + L +D Sbjct: 278 AEHYE-MIALEGEKPMIAA--LDRGWREAKGLKKVDAIARDL---FRRPFLPDELAKLDF 331 Query: 288 HSYRFKTIFVDPPRSGLDDATVGMVQA-YPHILYISCNPDSLCRDLSIL-STTHTIERLA 345 +DPPR+G + + ++ I Y+SCNP + RD ++L T+E Sbjct: 332 -------AVLDPPRAGAEAQVAELAKSEIAQIAYVSCNPVTFARDANVLIKAGFTLEWAQ 384 Query: 346 LFDQFPYTRHMECGVLLVR 364 + DQF ++ H+E R Sbjct: 385 VVDQFRWSSHVELAAKFAR 403 >gi|148543331|ref|YP_001270701.1| RNA methyltransferase [Lactobacillus reuteri DSM 20016] gi|184152739|ref|YP_001841080.1| RNA methyltransferase [Lactobacillus reuteri JCM 1112] gi|227364399|ref|ZP_03848491.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus reuteri MM2-3] gi|325683598|ref|ZP_08163114.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus reuteri MM4-1A] gi|148530365|gb|ABQ82364.1| 23S rRNA m(5)U-1939 methyltransferase [Lactobacillus reuteri DSM 20016] gi|183224083|dbj|BAG24600.1| RNA methyltransferase [Lactobacillus reuteri JCM 1112] gi|227070585|gb|EEI08916.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus reuteri MM2-3] gi|324977948|gb|EGC14899.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus reuteri MM4-1A] Length = 468 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 46/164 (28%), Positives = 72/164 (43%), Gaps = 18/164 (10%) Query: 205 ATKGIQGD----LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK 260 A+K ++ D L++ Y G G L LA V +EI +V A N N++ N K Sbjct: 309 ASKALELDQDDTLIDAYAGIGTIGLSLASRVKAVRGMEIIPEAVADANENAKLNNITNAK 368 Query: 261 IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYP-HI 318 ++E ++E F + VDPPR+GLDD + + + P Sbjct: 369 YEVGKAEEVLPRWQKE------------GLNFDALVVDPPRTGLDDQLIKQILKVKPRKF 416 Query: 319 LYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362 Y+SC SL R+L L++ + ++ + D P T E V L Sbjct: 417 AYVSCGMASLARNLRRLTSVYHVDYIQPIDMMPQTARCEAVVKL 460 >gi|328955342|ref|YP_004372675.1| 23S rRNA m(5)U-1939 methyltransferase [Coriobacterium glomerans PW2] gi|328455666|gb|AEB06860.1| 23S rRNA m(5)U-1939 methyltransferase [Coriobacterium glomerans PW2] Length = 438 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 45/148 (30%), Positives = 70/148 (47%), Gaps = 21/148 (14%) Query: 214 LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273 ++LY G G F+L LA V AVE P+V R N+ +NV+++ + Sbjct: 299 IDLYSGAGTFTLPLASRCAGVAAVESFGPAVRDLRRNLERARADNVEVIGGDAV------ 352 Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRD 331 REF +D D+ + VDPPR+GL + ++ + + Y+SC+P +L RD Sbjct: 353 ---REFPD-QDADV-------LLVDPPRAGLAAEAITLIGQTSARDVAYVSCDPATLARD 401 Query: 332 LSILSTTHTIERLAL--FDQFPYTRHME 357 L+ +A+ D FP T H E Sbjct: 402 LARFERDGVFRPVAVTAVDLFPQTFHCE 429 >gi|323357043|ref|YP_004223439.1| SAM-dependent methyltransferase [Microbacterium testaceum StLB037] gi|323273414|dbj|BAJ73559.1| SAM-dependent methyltransferase [Microbacterium testaceum StLB037] Length = 417 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 55/174 (31%), Positives = 82/174 (47%), Gaps = 22/174 (12%) Query: 203 LAATKGI--QGDLLELYCGNGNFSLVLAR---HFDRVLAVEIAKPSVEAARYNIA---AN 254 L A G+ +G L+LY G G F+ LA+ RV++VE + E A N+A Sbjct: 254 LTAVGGVDPEGLHLDLYGGVGLFAATLAQLGGSSTRVVSVESDPRATEHAGENLAEWIGA 313 Query: 255 HVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQ 313 + R +K A RERE RL + +DPPR+G V G+ Sbjct: 314 RAETARADRFVAKLAADASERERE--RLA--------RGVVLLDPPRAGAGREVVEGIAA 363 Query: 314 AYPH-ILYISCNPDSLCRDLSILSTTHTIERLAL--FDQFPYTRHMECGVLLVR 364 P + Y++C+P +L RDL+I + + R + D FP+T H+E V+L R Sbjct: 364 LSPATVAYVACDPVALSRDLAIFAEHGYVARDGIHGVDLFPHTHHVEAVVVLQR 417 >gi|302768729|ref|XP_002967784.1| hypothetical protein SELMODRAFT_440228 [Selaginella moellendorffii] gi|300164522|gb|EFJ31131.1| hypothetical protein SELMODRAFT_440228 [Selaginella moellendorffii] Length = 650 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 40/139 (28%), Positives = 62/139 (44%), Gaps = 13/139 (9%) Query: 200 EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259 EW A G L ++ CG G L LAR V+ +EI +V A N N ++N Sbjct: 429 EW---AGLGPNTLLFDICCGTGTIGLTLARKVGMVVGIEINADAVTDALTNAKLNDISNC 485 Query: 260 KIVRMSSKEFTQAMRREREF-------NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312 + V +++ + E E + D D + + VDPPRSGL + Sbjct: 486 RFVCAKAEDVVNKLLNEYEVLPEESSEDNAMDTDKKRFSNVVVIVDPPRSGLHPTVTKAL 545 Query: 313 QAYP---HILYISCNPDSL 328 + + ++Y+SCNPD+L Sbjct: 546 RVHSRLKRLVYVSCNPDTL 564 >gi|313200748|ref|YP_004039406.1| TrmA family RNA methyltransferase [Methylovorus sp. MP688] gi|312440064|gb|ADQ84170.1| RNA methyltransferase, TrmA family [Methylovorus sp. MP688] Length = 454 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 61/206 (29%), Positives = 85/206 (41%), Gaps = 44/206 (21%) Query: 178 LIYRQIENSFTQPNAGINVHMLE---WVLAATKGIQGDLLELYCGNGNFSLVLARHFDRV 234 L Y FTQ N IN ML +L A Q + + +CG GNF+L +AR V Sbjct: 255 LTYPFKPTEFTQVNPHINRVMLRRAMQLLGAQP--QDRIADFFCGLGNFTLPIARSGATV 312 Query: 235 LAVE----IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY 290 L +E + +VE+A N A+ V RE + ++ + S Sbjct: 313 LGMEGSAALVARAVESASLNGLADQVE----------------YREADLFKMTPEALQSL 356 Query: 291 R-FKTIFVDPPRSG-------LDDATVGMVQAYP---------HILYISCNPDSLCRDLS 333 F +DPPR G L D G A P I+Y+SCNP +L RD Sbjct: 357 GYFDKWLIDPPRDGALELIKSLADVGRGEDGAMPVAPKVAGPERIVYVSCNPATLARDAG 416 Query: 334 ILSTTHTIERLA--LFDQFPYTRHME 357 +L LA + + FP+T H+E Sbjct: 417 VLVNLKGYRLLAAGVINMFPHTSHVE 442 >gi|241759288|ref|ZP_04757394.1| 23S rRNA-methyltransferase [Neisseria flavescens SK114] gi|241320424|gb|EER56721.1| 23S rRNA-methyltransferase [Neisseria flavescens SK114] Length = 441 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 51/181 (28%), Positives = 83/181 (45%), Gaps = 23/181 (12%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 FTQ NA +N M+ + +G+ + +L+CG GNFS+ LA+ V+ +E A Sbjct: 269 GDFTQINAQLNEVMVARAVRLLNPQKGERIADLFCGLGNFSVPLAKSGASVVGIEGADYL 328 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDID---IHSY-RFKTIFVDP 299 V+ AR N N + F+ A L D D + S+ RF + +DP Sbjct: 329 VDRARENARLNRC-------AENMTFSVA--------DLFDTDEKTVESWGRFDKMLLDP 373 Query: 300 PRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHM 356 PR+G + + + I+Y+SCNP + RD +L + + + + F T H+ Sbjct: 374 PRNGAYAVVKSLHKPFLPQKIVYVSCNPSTFARDAGVLVDKGYKFKAAGIMNMFAQTSHV 433 Query: 357 E 357 E Sbjct: 434 E 434 >gi|147669587|ref|YP_001214405.1| (Uracil-5)-methyltransferase [Dehalococcoides sp. BAV1] gi|289432847|ref|YP_003462720.1| (uracil-5)-methyltransferase [Dehalococcoides sp. GT] gi|146270535|gb|ABQ17527.1| (Uracil-5)-methyltransferase [Dehalococcoides sp. BAV1] gi|288946567|gb|ADC74264.1| (Uracil-5)-methyltransferase [Dehalococcoides sp. GT] Length = 393 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 41/156 (26%), Positives = 80/156 (51%), Gaps = 20/156 (12%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L++ Y G G F+++L+ RV+A+E + +V+ A NI+ ++N+++++ +++ Sbjct: 254 LVDAYAGVGTFAVLLSPDCKRVIAIEESAAAVKDACLNISG--IDNIELIQSKTEDV--- 308 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCR 330 I+ + + +DP RSG + + + P +++Y++C+P SL R Sbjct: 309 ------------INQFEGQMDALILDPSRSGAHPSVLATICQNPPRNLVYVACDPSSLAR 356 Query: 331 DLSI-LSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 DL I L+ + + D FP T H+E LL K Sbjct: 357 DLKILLAGPFELSSVIPVDMFPQTYHVETLALLKCK 392 >gi|254510029|ref|ZP_05122096.1| 23S rRNA (uracil-5-)-methyltransferase [Rhodobacteraceae bacterium KLH11] gi|221533740|gb|EEE36728.1| 23S rRNA (uracil-5-)-methyltransferase [Rhodobacteraceae bacterium KLH11] Length = 409 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 48/175 (27%), Positives = 83/175 (47%), Gaps = 16/175 (9%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 +F Q +L+ V A +G + +++L+ G G FSL LA + V AVE Sbjct: 238 GAFLQATKDGEQALLKAVFEAVRGAK-HVVDLFAGCGTFSLPLAETAE-VHAVE-----G 290 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 EA + ++ + E RR + LK F + +DPPR+G Sbjct: 291 EAEMTQALDQGWRKAQGLKQITTEARDLFRRPLMPDELK-------AFDAVVLDPPRAGA 343 Query: 305 DDATVGMVQAYPHIL-YISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHME 357 + + QA+P ++ Y+SCNP + RD ++++ +T+E + + DQF ++ H E Sbjct: 344 EAQVAELAQAHPPVIAYVSCNPVTFARDAKTLVNAGYTLEWVQVVDQFRWSSHTE 398 >gi|207743450|ref|YP_002259842.1| rna methyltransferase protein [Ralstonia solanacearum IPO1609] gi|206594847|emb|CAQ61774.1| rna methyltransferase protein [Ralstonia solanacearum IPO1609] Length = 448 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 56/197 (28%), Positives = 87/197 (44%), Gaps = 27/197 (13%) Query: 175 GRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDR 233 G T+ ++ + FTQ N IN ++ VL GD LL+L+CG GNF+L +A Sbjct: 257 GITMPFKPTD--FTQVNHQINRVLMSRVLKLLDARPGDRLLDLFCGIGNFTLPMATRGRE 314 Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293 V+ +E ++ A N N ++ + T A R E + DI RF Sbjct: 315 VMGIEGSETLTTRALANAQHNGLD---------AKTTFACRNLFEVS-ADDIAALG-RFD 363 Query: 294 TIFVDPPRSGLDDATVGMVQAY-----------PHILYISCNPDSLCRDLSIL--STTHT 340 VDPPR G + + + I+Y+SCNP +L RD +L + Sbjct: 364 RWLVDPPREGALAVSKALAELSQRGGEAAALLPGRIVYVSCNPATLARDAGLLVHEAGYR 423 Query: 341 IERLALFDQFPYTRHME 357 + + + FP+T H+E Sbjct: 424 LSGAGVVNMFPHTSHVE 440 >gi|227543796|ref|ZP_03973845.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus reuteri CF48-3A] gi|300908864|ref|ZP_07126327.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus reuteri SD2112] gi|227186223|gb|EEI66294.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus reuteri CF48-3A] gi|300894271|gb|EFK87629.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus reuteri SD2112] Length = 468 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 46/164 (28%), Positives = 71/164 (43%), Gaps = 18/164 (10%) Query: 205 ATKGIQGD----LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK 260 A+K ++ D L++ Y G G L LA V +EI +V A N N++ N K Sbjct: 309 ASKALELDKDDTLIDAYAGIGTIGLSLASRVKSVCGMEIIPEAVADANENAKLNNITNAK 368 Query: 261 IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYP-HI 318 ++E + E F + VDPPR+GLDD + + + P Sbjct: 369 YEVGKAEEVLPRWQEE------------GLNFDALVVDPPRTGLDDQLIKQILKVKPRKF 416 Query: 319 LYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362 Y+SC SL R+L L++ + ++ + D P T E V L Sbjct: 417 AYVSCGMASLARNLRRLTSVYHVDYIQPIDMMPQTARCEAVVKL 460 >gi|73748826|ref|YP_308065.1| RNA methyltransferase [Dehalococcoides sp. CBDB1] gi|73660542|emb|CAI83149.1| RNA methyltransferase, TrmA family [Dehalococcoides sp. CBDB1] Length = 393 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 41/156 (26%), Positives = 80/156 (51%), Gaps = 20/156 (12%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L++ Y G G F+++L+ RV+A+E + +V+ A NI+ ++N+++++ +++ Sbjct: 254 LVDAYAGVGTFAVLLSPDCKRVIAIEESAAAVKDACLNISG--IDNIELIQSKTEDV--- 308 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCR 330 I+ + + +DP RSG + + + P +++Y++C+P SL R Sbjct: 309 ------------INQFEGQMDALILDPSRSGAHPSVLATICQNPPRNLVYVACDPSSLAR 356 Query: 331 DLSI-LSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 DL I L+ + + D FP T H+E LL K Sbjct: 357 DLKILLAGPFELSSVIPVDMFPQTYHVETLALLKCK 392 >gi|184201679|ref|YP_001855886.1| 23S rRNA methyluridine methyltransferase [Kocuria rhizophila DC2201] gi|183581909|dbj|BAG30380.1| putative 23S rRNA (uracil-5-)-methyltransferase RumB [Kocuria rhizophila DC2201] Length = 378 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 50/190 (26%), Positives = 82/190 (43%), Gaps = 30/190 (15%) Query: 186 SFTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241 SF Q N + + +WV A + +LYCG G F+L +A V+ EI++ Sbjct: 207 SFFQTNTAVTEQLYRQVADWVDAVGPA---SVWDLYCGVGGFALHVAGPGREVVGTEISE 263 Query: 242 PSVEAAR-----YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296 +V +A+ + + +V+ + + + E Sbjct: 264 EAVASAQDTARAMGLPQDGPGSVRFLADDAAATPADLPGTPELA---------------V 308 Query: 297 VDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTR 354 V+PPR GLD + +++ H +Y SCN +L RDL+ + + +E L D FP+T Sbjct: 309 VNPPRRGLDASLCAWLESSSVRHAVYSSCNAQTLARDLARMPSLRPVE-ARLLDMFPHTG 367 Query: 355 HMECGVLLVR 364 H E VLL R Sbjct: 368 HYEVAVLLRR 377 >gi|116629999|ref|YP_815171.1| tRNA (uracil-5-)-methyltransferase related enzyme [Lactobacillus gasseri ATCC 33323] gi|238853814|ref|ZP_04644180.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus gasseri 202-4] gi|311110369|ref|ZP_07711766.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus gasseri MV-22] gi|116095581|gb|ABJ60733.1| 23S rRNA m(5)U-1939 methyltransferase [Lactobacillus gasseri ATCC 33323] gi|238833623|gb|EEQ25894.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus gasseri 202-4] gi|311065523|gb|EFQ45863.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus gasseri MV-22] Length = 462 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 40/153 (26%), Positives = 73/153 (47%), Gaps = 14/153 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L++ Y G G ++ + +V+ +E +V A+ N NHV N + ++ + ++ Sbjct: 314 LIDAYAGVGTLGILASDQVRQVIGIESIPEAVIDAQENCHLNHVRNAEYIQGNVEKLLPE 373 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330 ++ N+ ID + VDPPR+GL + +++ P +Y+SCNP +L + Sbjct: 374 LK-----NQGVPID-------ALIVDPPRTGLSKKLIKTLLEVKPETFVYVSCNPATLAK 421 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363 DL +LS + + + D P T E LV Sbjct: 422 DLVLLSEAYDVRVIQPVDMMPQTPRWEGVTKLV 454 >gi|204929928|ref|ZP_03220949.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|204320922|gb|EDZ06123.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] Length = 375 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 42/154 (27%), Positives = 70/154 (45%), Gaps = 18/154 (11%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + +L+CG G F L A ++ +EIA ++ A+ + A + + + S +F A Sbjct: 237 MWDLFCGVGGFGLHCATPQMQLTGIEIAPEAIACAKQSAAELRLTRLHFQALDSTQFATA 296 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330 + + V+PPR G+ + Q P I+Y SCN ++ + Sbjct: 297 QGETPDL---------------VLVNPPRRGIGKPLCDYLAQMAPRFIIYSSCNAQTMAQ 341 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D+ L + I+R+ LFD FP+T H E LL R Sbjct: 342 DIRHLPN-YRIQRVQLFDMFPHTAHYEVLTLLCR 374 >gi|158319641|ref|YP_001512148.1| RNA methyltransferase [Alkaliphilus oremlandii OhILAs] gi|158139840|gb|ABW18152.1| RNA methyltransferase, TrmA family [Alkaliphilus oremlandii OhILAs] Length = 452 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 46/156 (29%), Positives = 75/156 (48%), Gaps = 17/156 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + ++YCG G SL LA+ V +EI ++E AR N NH+ N K +++ Sbjct: 307 VFDIYCGIGTISLFLAKKAKEVHGIEIIDAAIEDARENARINHLTNTKFYVGKAEDVVPK 366 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCR 330 + + + VDPPR G +++ + + A ++Y+SCNP +L R Sbjct: 367 LYKS------------GLVADVVVVDPPRKGCEESVLETIVNMAPKRVVYVSCNPATLAR 414 Query: 331 DLSILSTT--HTIERLALFDQFPYTRHMECGVLLVR 364 DL+ L T+E + D F ++ H+EC V L R Sbjct: 415 DLAYLDEKGYKTVE-VQPVDMFSHSSHVECCVSLER 449 >gi|47097757|ref|ZP_00235248.1| RNA methyltransferase, TrmA family [Listeria monocytogenes str. 1/2a F6854] gi|47013868|gb|EAL04910.1| RNA methyltransferase, TrmA family [Listeria monocytogenes str. 1/2a F6854] Length = 351 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 37/127 (29%), Positives = 59/127 (46%), Gaps = 16/127 (12%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L++ YCG G A V ++I S+E A+ N N + NV +++ Sbjct: 238 LVDAYCGVGTIGQAFAGKVKEVRGMDIIPESIEDAKRNAEKNGIENVYYEVGKAEDVLPK 297 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM---VQAYPHILYISCNPDSLC 329 +E +R + VDPPRSG D + V+A ++Y+SCNP +L Sbjct: 298 WVKE------------GFRPDAVIVDPPRSGCDQGLIKSLLDVEAK-QLVYVSCNPSTLA 344 Query: 330 RDLSILS 336 RDL++L+ Sbjct: 345 RDLALLA 351 >gi|321263230|ref|XP_003196333.1| tRNA methyltransferase [Cryptococcus gattii WM276] gi|317462809|gb|ADV24546.1| tRNA methyltransferase, putative [Cryptococcus gattii WM276] Length = 612 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 50/171 (29%), Positives = 75/171 (43%), Gaps = 30/171 (17%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L++ YCG+G F + L+ F V VEI+ S+EAA+ N N + + K + K Sbjct: 446 LVDTYCGSGLFGVTLSPSFTAVAGVEISSISIEAAKRNAEMNGLKD-KTTWLCGKA---- 500 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY-P-HILYISCNPDSLCR 330 E F L + + R + VDPPR G D + + + P I+Y+SCN + R Sbjct: 501 ---EDIFGGLAEQGF-AGRHSCVVVDPPRKGCDTPFLDQLLNFRPLTIVYVSCNVHTQAR 556 Query: 331 DLSIL-------------------STTHTIERLALFDQFPYTRHMECGVLL 362 D+ L + +E L FD FP T H+E +L Sbjct: 557 DVGYLVHESNKRGQASQGKEEAMKGWKYIVESLRGFDLFPQTAHVESVAVL 607 >gi|300361238|ref|ZP_07057415.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus gasseri JV-V03] gi|300353857|gb|EFJ69728.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus gasseri JV-V03] Length = 459 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 40/153 (26%), Positives = 73/153 (47%), Gaps = 14/153 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L++ Y G G ++ + +V+ +E +V A+ N NHV N + ++ + ++ Sbjct: 314 LIDAYAGVGTLGILASDQVRQVIGIESIPEAVIDAQENCHLNHVRNAEYIQGNVEKLLPE 373 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330 ++ N+ ID + VDPPR+GL + +++ P +Y+SCNP +L + Sbjct: 374 LK-----NQGVPID-------ALIVDPPRTGLSKKLIKTLLEVKPETFVYVSCNPATLAK 421 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363 DL +LS + + + D P T E LV Sbjct: 422 DLVLLSEAYDVRVIQPVDMMPQTPRWEGVTKLV 454 >gi|229829260|ref|ZP_04455329.1| hypothetical protein GCWU000342_01347 [Shuttleworthia satelles DSM 14600] gi|229792423|gb|EEP28537.1| hypothetical protein GCWU000342_01347 [Shuttleworthia satelles DSM 14600] Length = 532 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 51/158 (32%), Positives = 76/158 (48%), Gaps = 18/158 (11%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + +LY G G + +LA V+ VEI + +V AAR N N ++N + + Sbjct: 390 VFDLYSGTGTIAQILAPAAGHVIGVEIVEEAVAAARANAKKNGLDNCEFI---------- 439 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330 + LK ID + I +DPPR G+ + + Y ++YISC P SL R Sbjct: 440 -----AGDVLKVIDDIEDKPDFIVLDPPRDGIHPKALDKIIDYGVESMIYISCKPTSLVR 494 Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRKPS 367 DL IL + + + R+ D FP T H+EC L+ R S Sbjct: 495 DLEILMARGYEVRRMRGVDMFPATGHVECIALIQRVKS 532 >gi|187608197|ref|NP_001120451.1| TRM2 tRNA methyltransferase 2 homolog A [Xenopus (Silurana) tropicalis] gi|170285270|gb|AAI61232.1| LOC100145545 protein [Xenopus (Silurana) tropicalis] Length = 613 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 49/167 (29%), Positives = 81/167 (48%), Gaps = 29/167 (17%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +L++ CG G + LA+ +V+ +E+ + ++ A+ N N+++NV EF + Sbjct: 441 VLDVCCGTGTIGISLAKKVKKVVGIELCQEAIADAKANAQLNNLDNV--------EF-RC 491 Query: 273 MRREREFNRLKDIDIHSYRFKT--IFVDPPRSGLDDATVGMVQAYPH---ILYISCNPDS 327 + E F L I+S+ F + VDPPR+GL + ++ H ++Y+SCNP + Sbjct: 492 GKAEDIFPTL----IYSFTFPSPLAIVDPPRAGLHSKVIIAIRKAEHLKQLIYVSCNPKA 547 Query: 328 -------LCRDLSILSTT---HTIERLALFDQFPYTRHMECGVLLVR 364 LCR S I+ LA+ D FP T H E +L R Sbjct: 548 AMNNFIDLCRAPSNRVKGRPFRPIKALAV-DLFPQTPHFELVILFER 593 >gi|322616357|gb|EFY13266.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322619607|gb|EFY16482.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322622697|gb|EFY19542.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322628609|gb|EFY25396.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322631546|gb|EFY28302.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322637073|gb|EFY33776.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322641728|gb|EFY38364.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322644479|gb|EFY41019.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322650060|gb|EFY46477.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322654147|gb|EFY50470.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322658062|gb|EFY54329.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322663536|gb|EFY59738.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322670272|gb|EFY66412.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322671508|gb|EFY67630.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322676864|gb|EFY72931.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322682789|gb|EFY78808.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322686468|gb|EFY82450.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323196078|gb|EFZ81241.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323196776|gb|EFZ81920.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323202945|gb|EFZ87979.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323208985|gb|EFZ93922.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323209696|gb|EFZ94623.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323215178|gb|EFZ99923.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323222381|gb|EGA06759.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323227505|gb|EGA11665.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323229856|gb|EGA13979.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323233081|gb|EGA17177.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323240816|gb|EGA24858.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323243133|gb|EGA27153.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323248675|gb|EGA32603.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323251676|gb|EGA35543.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323257336|gb|EGA41034.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323261924|gb|EGA45490.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323267940|gb|EGA51419.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323271993|gb|EGA55408.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 375 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 42/154 (27%), Positives = 70/154 (45%), Gaps = 18/154 (11%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + +L+CG G F L A ++ +EIA ++ A+ + A + + + S +F A Sbjct: 237 MWDLFCGVGGFGLHCATPQMQLTGIEIAPEAIACAKQSAAELGLTRLHFQALDSTQFATA 296 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330 + + V+PPR G+ + Q P I+Y SCN ++ + Sbjct: 297 QGETPDL---------------VLVNPPRRGIGKPLCDYLAQMAPRFIIYSSCNAQTMAQ 341 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D+ L + I+R+ LFD FP+T H E LL R Sbjct: 342 DIRHLPN-YRIQRVQLFDMFPHTAHYEVLTLLCR 374 >gi|269217160|ref|ZP_06161014.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Slackia exigua ATCC 700122] gi|269129297|gb|EEZ60382.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Slackia exigua ATCC 700122] Length = 376 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 53/191 (27%), Positives = 81/191 (42%), Gaps = 24/191 (12%) Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFD--- 232 L +R SF Q N+ +L G+ G+ +L+ YCG G LV A+ D Sbjct: 190 LSFRISSRSFYQVNSE-QTEVLYRTAVEMAGLTGEETILDAYCGTGTIGLVAAKGIDGKP 248 Query: 233 ---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHS 289 ++ VE +V AR N N + + + + F MRR + Sbjct: 249 GAKHLIGVEERMDAVADARTNARHNGIGSAEFFSDDAGAF---MRR---------LAAEG 296 Query: 290 YRFKTIFVDPPRSGL--DDATVGMVQAYPHILYISCNPDSLCRDLSILST-THTIERLAL 346 +F+DPPR+G D + A I+Y+SCNP + RD L + ++ L Sbjct: 297 GSVDAVFMDPPRAGATPDFLKAACLLAPRRIVYVSCNPATQLRDARYLCDHGYRLDTLQP 356 Query: 347 FDQFPYTRHME 357 D FP+T H+E Sbjct: 357 VDMFPHTEHVE 367 >gi|313896553|ref|ZP_07830102.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Selenomonas sp. oral taxon 137 str. F0430] gi|312974738|gb|EFR40204.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Selenomonas sp. oral taxon 137 str. F0430] Length = 457 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 40/152 (26%), Positives = 64/152 (42%), Gaps = 21/152 (13%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G +L LA+ V +EI +P++ AR N N + N + + + + Sbjct: 312 VIDAYCGTGTITLFLAQRAWNVYGIEIVRPAILDARKNACDNGIKNAEFIVGDTTAVMPS 371 Query: 273 MRRE-----REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYISCNPDS 327 + R+ KT PR I+Y+SCNP + Sbjct: 372 LYRQGVRPDVVVVDPPRAGCTPTVLKTFANMKPR---------------RIVYVSCNPAT 416 Query: 328 LCRDLSILST-THTIERLALFDQFPYTRHMEC 358 L RDL+I+ T + + D FP T H+EC Sbjct: 417 LARDLAIMKTLGYEAREIQPVDLFPQTSHVEC 448 >gi|197251768|ref|YP_002145836.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|226725410|sp|B5F101|RUMB_SALA4 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName: Full=23S rRNA(M-5-U747)-methyltransferase gi|197215471|gb|ACH52868.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Salmonella enterica subsp. enterica serovar Agona str. SL483] Length = 375 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 42/154 (27%), Positives = 70/154 (45%), Gaps = 18/154 (11%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + +L+CG G F L A ++ +EIA ++ A+ + A + + + S +F A Sbjct: 237 MWDLFCGVGGFGLHCATPQMQLTGIEIAPEAIACAKQSAAELGLTRLHFQALDSTQFATA 296 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330 + + V+PPR G+ + Q P I+Y SCN ++ + Sbjct: 297 QGETPDL---------------VLVNPPRRGIGKPLCDYLAQMAPRFIIYSSCNAQTMAQ 341 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D+ L + I+R+ LFD FP+T H E LL R Sbjct: 342 DIRHLPN-YRIQRVQLFDMFPHTAHYEVLTLLCR 374 >gi|300691812|ref|YP_003752807.1| 23S rRNA (Uracil-5-)-methyltransferase rumA (23S rRNA(M-5-U1939)-methyltransferase) [Ralstonia solanacearum PSI07] gi|299078872|emb|CBJ51533.2| 23S rRNA (Uracil-5-)-methyltransferase rumA (23S rRNA(M-5-U1939)-methyltransferase) [Ralstonia solanacearum PSI07] Length = 494 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 55/197 (27%), Positives = 85/197 (43%), Gaps = 27/197 (13%) Query: 175 GRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDR 233 G T+ ++ + FTQ N IN ++ VL GD LL+L+CG GNF+L +A Sbjct: 303 GITMPFKPTD--FTQVNHQINRVLMSRVLKLLDAQPGDRLLDLFCGIGNFTLPMATRGRE 360 Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293 V+ +E ++ A N N ++ + T A R F D RF Sbjct: 361 VMGIEGSETLTTRALANAQHNGLD---------AKTTFACR--NLFEVTADDIAELGRFD 409 Query: 294 TIFVDPPRSGLDDATVGMVQAY-----------PHILYISCNPDSLCRDLSIL--STTHT 340 VDPPR G + + + I+Y+SCNP +L RD +L + Sbjct: 410 RWLVDPPREGALAVSKALAELSQRGGEAAALLPGRIVYVSCNPATLARDAGLLVHEAGYR 469 Query: 341 IERLALFDQFPYTRHME 357 + + + FP+T H+E Sbjct: 470 LAGAGVVNMFPHTSHVE 486 >gi|168819955|ref|ZP_02831955.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205343011|gb|EDZ29775.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|320085157|emb|CBY94944.1| putative enzyme [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 375 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 42/154 (27%), Positives = 70/154 (45%), Gaps = 18/154 (11%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + +L+CG G F L A ++ +EIA ++ A+ + A + + + S +F A Sbjct: 237 MWDLFCGVGGFGLHCATPQMQLTGIEIAPEAIACAKQSAAELGLTRLHFQALDSTQFATA 296 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330 + + V+PPR G+ + Q P I+Y SCN ++ + Sbjct: 297 QGETPDL---------------VLVNPPRRGIGKPLCDYLAQMAPRFIIYSSCNAQTMAQ 341 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D+ L + I+R+ LFD FP+T H E LL R Sbjct: 342 DIRHLPN-YRIQRVQLFDMFPHTAHYEVLTLLCR 374 >gi|207723158|ref|YP_002253557.1| rna methyltransferase protein [Ralstonia solanacearum MolK2] gi|206588352|emb|CAQ35315.1| rna methyltransferase protein [Ralstonia solanacearum MolK2] Length = 482 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 56/197 (28%), Positives = 87/197 (44%), Gaps = 27/197 (13%) Query: 175 GRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDR 233 G T+ ++ + FTQ N IN ++ VL GD LL+L+CG GNF+L +A Sbjct: 291 GITMPFKPTD--FTQVNHQINRVLMSRVLKLLDARPGDRLLDLFCGIGNFTLPMATRGRE 348 Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293 V+ +E ++ A N N ++ + T A R E + DI RF Sbjct: 349 VMGIEGSETLTTRALANAQHNGLD---------AKTTFACRNLFEVS-ADDIAALG-RFD 397 Query: 294 TIFVDPPRSGLDDATVGMVQAY-----------PHILYISCNPDSLCRDLSIL--STTHT 340 VDPPR G + + + I+Y+SCNP +L RD +L + Sbjct: 398 RWLVDPPREGALAVSKALAELSQRGGEAAALLPGRIVYVSCNPATLARDAGLLVHEAGYR 457 Query: 341 IERLALFDQFPYTRHME 357 + + + FP+T H+E Sbjct: 458 LSGAGVVNMFPHTSHVE 474 >gi|168230788|ref|ZP_02655846.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|194471664|ref|ZP_03077648.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194458028|gb|EDX46867.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|205334770|gb|EDZ21534.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] Length = 375 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 42/154 (27%), Positives = 70/154 (45%), Gaps = 18/154 (11%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + +L+CG G F L A ++ +EIA ++ A+ + A + + + S +F A Sbjct: 237 MWDLFCGVGGFGLHCATPQMQLTGIEIAPEAIACAKQSAAELGLTRLHFQALDSTQFATA 296 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330 + + V+PPR G+ + Q P I+Y SCN ++ + Sbjct: 297 QGETPDL---------------VLVNPPRRGIGKPLCDYLAQMAPRFIIYSSCNAQTMAQ 341 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D+ L + I+R+ LFD FP+T H E LL R Sbjct: 342 DIRHLPN-YRIQRVQLFDMFPHTAHYEVLTLLCR 374 >gi|268319868|ref|YP_003293524.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus johnsonii FI9785] gi|262398243|emb|CAX67257.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus johnsonii FI9785] Length = 459 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 38/153 (24%), Positives = 70/153 (45%), Gaps = 14/153 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L++ Y G G ++ + +V+ +E +V A+ N NHV N + ++ + ++ Sbjct: 314 LIDAYAGVGTLGILASDQVRQVIGIESIPEAVIDAQENCRLNHVRNAEYIQGNVEKL--- 370 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330 L ++ + VDPPR+GL + +++ P +Y+SCNP +L + Sbjct: 371 ---------LPELKNQGVPINALIVDPPRTGLSKKLIKTLLEVKPETFVYVSCNPATLAK 421 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363 DL +LS + + + D P T E LV Sbjct: 422 DLVLLSEAYDVRVIQPVDMMPQTPRWEGVTKLV 454 >gi|168263599|ref|ZP_02685572.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|205347794|gb|EDZ34425.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] Length = 375 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 42/154 (27%), Positives = 70/154 (45%), Gaps = 18/154 (11%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + +L+CG G F L A ++ +EIA ++ A+ + A + + + S +F A Sbjct: 237 MWDLFCGVGGFGLHCATPQMQLTGIEIAPEAIACAKQSAAELGLTRLHFQALDSTQFATA 296 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330 + + V+PPR G+ + Q P I+Y SCN ++ + Sbjct: 297 QGETPDL---------------VLVNPPRRGIGKPLCDYLAQMAPRFIIYSSCNAQTMAQ 341 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D+ L + I+R+ LFD FP+T H E LL R Sbjct: 342 DIRHLPN-YRIQRVQLFDMFPHTAHYEVLTLLCR 374 >gi|167587043|ref|ZP_02379431.1| RNA methyltransferase, TrmA family protein [Burkholderia ubonensis Bu] Length = 451 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 58/190 (30%), Positives = 83/190 (43%), Gaps = 24/190 (12%) Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 FTQ N IN ++ L + D +L+L+CG GNF+L LAR V+ +E ++ Sbjct: 273 FTQVNHQINRVLVGRALRLLAPSRDDRVLDLFCGIGNFTLPLARLAREVMGIEGSETLTT 332 Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY-RFKTIFVDPPRSG- 303 A N N V+ T A R F D DI + F +DPPR G Sbjct: 333 RALANARENGVDG---------HTTFACR--NLFEVTAD-DIRALGAFDKFLIDPPREGA 380 Query: 304 -------LDDATVGMVQAYPHILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTR 354 D A G I+Y+SCNP +L RD +L + ++ + + FP+T Sbjct: 381 LAVSKALADIAQSGEGPLPRRIVYVSCNPSTLARDAGLLVHEAGYRLKGAGVVNMFPHTS 440 Query: 355 HMECGVLLVR 364 H+E L R Sbjct: 441 HVESIALFER 450 >gi|198242601|ref|YP_002214847.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|226725411|sp|B5FPZ6|RUMB_SALDC RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName: Full=23S rRNA(M-5-U747)-methyltransferase gi|197937117|gb|ACH74450.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|326622600|gb|EGE28945.1| 23S rRNA (uracil-5-)-methyltransferase rumB [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 375 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 42/154 (27%), Positives = 70/154 (45%), Gaps = 18/154 (11%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + +L+CG G F L A ++ +EIA ++ A+ + A + + + S +F A Sbjct: 237 MWDLFCGVGGFGLHCATPQMQLTGIEIAPEAIACAKQSAAELGLTRLHFQALDSTQFATA 296 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330 + + V+PPR G+ + Q P I+Y SCN ++ + Sbjct: 297 QGETPDL---------------VLVNPPRRGIGKPLCDYLAQMAPRFIIYSSCNAQTMAQ 341 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D+ L + I+R+ LFD FP+T H E LL R Sbjct: 342 DIRHLPN-YRIQRVQLFDMFPHTAHYEVLTLLCR 374 >gi|313680187|ref|YP_004057926.1| 23S rRNA m(5)u-1939 methyltransferase [Oceanithermus profundus DSM 14977] gi|313152902|gb|ADR36753.1| 23S rRNA m(5)U-1939 methyltransferase [Oceanithermus profundus DSM 14977] Length = 427 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 46/154 (29%), Positives = 76/154 (49%), Gaps = 20/154 (12%) Query: 208 GIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267 G LELY G+G LA+ + RV ++ + S+E R + A + NV+ R ++ Sbjct: 283 GTGESALELYGGSGVLGFFLAQGYARVTVTDLNRRSIEKGRADAARLGLANVRFARADAR 342 Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNP 325 E + E + VDPPRSGL T+ +V+ P I+Y++C+P Sbjct: 343 EAARFGPAE-----------------LVAVDPPRSGLARETLAALVELKPEKIIYVACDP 385 Query: 326 DSLCRDLSILST-THTIERLALFDQFPYTRHMEC 358 + RD++ L+ + +E + +D FPYT H+E Sbjct: 386 ATWARDVARLAERGYRLEFVRPYDFFPYTHHVEV 419 >gi|241766451|ref|ZP_04764323.1| RNA methyltransferase, TrmA family [Acidovorax delafieldii 2AN] gi|241363348|gb|EER58868.1| RNA methyltransferase, TrmA family [Acidovorax delafieldii 2AN] Length = 487 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 57/222 (25%), Positives = 94/222 (42%), Gaps = 35/222 (15%) Query: 165 DYVDERLTVA----GRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCG 219 D E+L+ A G T+ ++ + FTQ N IN ++ L + + +++ +CG Sbjct: 264 DEGGEQLSYALPDFGITMPFKPTD--FTQVNPHINRVLVSRALRLLDVQKSERVIDWFCG 321 Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279 GNF+L LA VL +E ++ V +R N A N +++ EF F Sbjct: 322 LGNFTLPLATQAREVLGIEGSEALVARSRENYAINQAAAQGQRPLAATEFVA----RNLF 377 Query: 280 NRLKDIDIHSYRFKTIFVDPPRSG----------LDDATVGMVQAYP------------H 317 ++ + VDPPR G ++ A +G A P Sbjct: 378 EMTPEMLVADGAADKWLVDPPREGAFALAKALADIEQARIGAEGADPLPAGAEGWTPPQR 437 Query: 318 ILYISCNPDSLCRDLSILS--TTHTIERLALFDQFPYTRHME 357 I+Y+SCNP +L RD +L + + + FP+T H+E Sbjct: 438 IVYVSCNPATLARDAGLLVHLAGYKCTAAGMVNMFPHTAHVE 479 >gi|213428046|ref|ZP_03360796.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] Length = 375 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 42/154 (27%), Positives = 70/154 (45%), Gaps = 18/154 (11%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + +L+CG G F L A ++ +EIA ++ A+ + A + + + S +F A Sbjct: 237 MWDLFCGVGGFGLHCAAPQMQLTGIEIAPEAIACAKQSAAELGLTRLHFQALDSTQFATA 296 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330 + + V+PPR G+ + Q P I+Y SCN ++ + Sbjct: 297 QGETPDL---------------VLVNPPRRGIGKPLCDYLAQMAPRFIIYSSCNAQTMAQ 341 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D+ L + I+R+ LFD FP+T H E LL R Sbjct: 342 DIRHLPN-YRIQRVQLFDMFPHTAHYEVLTLLCR 374 >gi|200391026|ref|ZP_03217637.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|199603471|gb|EDZ02017.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Salmonella enterica subsp. enterica serovar Virchow str. SL491] Length = 375 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 42/154 (27%), Positives = 70/154 (45%), Gaps = 18/154 (11%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + +L+CG G F L A ++ +EIA ++ A+ + A + + + S +F A Sbjct: 237 MWDLFCGVGGFGLHCATPQMQLTGIEIAPEAIACAKQSAAELGLTRLHFQALDSTQFATA 296 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330 + + V+PPR G+ + Q P I+Y SCN ++ + Sbjct: 297 QGETPDL---------------VLVNPPRRGIGKPLCDYLAQMAPRFIIYSSCNAQTMAQ 341 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D+ L + I+R+ LFD FP+T H E LL R Sbjct: 342 DIRHLPN-YRIQRVQLFDMFPHTAHYEVLTLLCR 374 >gi|78184707|ref|YP_377142.1| 23S rRNA methyltransferase/RumA [Synechococcus sp. CC9902] gi|78169001|gb|ABB26098.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Synechococcus sp. CC9902] Length = 469 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 50/181 (27%), Positives = 85/181 (46%), Gaps = 22/181 (12%) Query: 190 PNAGINVHML-EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248 P A VH+L +W+ T+ +G +++ YCG G SL LA V+ +E+ + SV+ A Sbjct: 298 PQAERIVHVLCDWL--KTELGEGTVVDAYCGIGTISLPLAAQGFEVIGLELHQGSVDQAL 355 Query: 249 YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDAT 308 N N+++ K R + + + + + +DPPR GLD Sbjct: 356 LNAMRNNLS--KGCRFRAGDVVDLLESAL------------FGADALVLDPPRRGLDARV 401 Query: 309 VGMVQAYP--HILYISCNPDSLCRDLSIL---STTHTIERLALFDQFPYTRHMECGVLLV 363 + + P + Y+SC+P + RDL +L + + +++ D FP T H+E LL Sbjct: 402 IQTILDNPPKRLAYLSCDPATQARDLKLLMQPAGPYRLKKHQPIDFFPQTTHLESLALLE 461 Query: 364 R 364 R Sbjct: 462 R 462 >gi|16759792|ref|NP_455409.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29142435|ref|NP_805777.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213052506|ref|ZP_03345384.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213583498|ref|ZP_03365324.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213611249|ref|ZP_03370075.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213647857|ref|ZP_03377910.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213855247|ref|ZP_03383487.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|20455397|sp|Q8Z841|RUMB_SALTI RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName: Full=23S rRNA(M-5-U747)-methyltransferase gi|25322734|pir||AG0606 hypothetical RNA methyltransferase (EC 2.1.1.-) [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16502085|emb|CAD05321.1| hypothetical RNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhi] gi|29138065|gb|AAO69626.1| hypothetical RNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 375 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 42/154 (27%), Positives = 70/154 (45%), Gaps = 18/154 (11%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + +L+CG G F L A ++ +EIA ++ A+ + A + + + S +F A Sbjct: 237 MWDLFCGVGGFGLHCATPQMQLTGIEIAPEAIACAKQSAAELGLTRLHFQALDSTQFATA 296 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330 + + V+PPR G+ + Q P I+Y SCN ++ + Sbjct: 297 QGETPDL---------------VLVNPPRRGIGKPLCDYLAQMAPRFIIYSSCNAQTMAQ 341 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D+ L + I+R+ LFD FP+T H E LL R Sbjct: 342 DIRHLPN-YRIQRVQLFDMFPHTAHYEVLTLLCR 374 >gi|322504877|emb|CBZ14664.1| conserved hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904] Length = 604 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 46/166 (27%), Positives = 75/166 (45%), Gaps = 20/166 (12%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 LL+L G G L L++H RV+ +E+ + +V AR N N + N + + + Sbjct: 406 LLDLCSGTGTIGLTLSKHVRRVIGIELVESAVANARRNAQQNGIANAEFHCGRVEHLLPS 465 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHI---LYISCNPDSLC 329 + DI + +DPPR+G++ + ++ I +YISC +L Sbjct: 466 VISGLPAEDRGDI--------VVILDPPRAGVNSTVLKWIRGMETIRRVVYISCEQKALE 517 Query: 330 RDLSILSTTHT-------IERLALF--DQFPYTRHMECGVLLVRKP 366 RD L+ +T E A F D FP+T H+E +L R+P Sbjct: 518 RDCPRLTKPNTKAYRGNPFEVTAAFAVDLFPHTHHVEMIAVLTRRP 563 >gi|83747940|ref|ZP_00944971.1| 23S rRNA m(5)U 1939 methyltransferase [Ralstonia solanacearum UW551] gi|83725358|gb|EAP72505.1| 23S rRNA m(5)U 1939 methyltransferase [Ralstonia solanacearum UW551] Length = 502 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 56/197 (28%), Positives = 87/197 (44%), Gaps = 27/197 (13%) Query: 175 GRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDR 233 G T+ ++ + FTQ N IN ++ VL GD LL+L+CG GNF+L +A Sbjct: 311 GITMPFKPTD--FTQVNHQINRVLMSRVLKLLDARPGDRLLDLFCGIGNFTLPMATRGRE 368 Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293 V+ +E ++ A N N ++ + T A R E + DI RF Sbjct: 369 VMGIEGSETLTTRALANAQHNGLD---------AKTTFACRNLFEVS-ADDIAALG-RFD 417 Query: 294 TIFVDPPRSGLDDATVGMVQAY-----------PHILYISCNPDSLCRDLSIL--STTHT 340 VDPPR G + + + I+Y+SCNP +L RD +L + Sbjct: 418 RWLVDPPREGALAVSKALAELSQRGGEAAALLPGRIVYVSCNPATLARDAGLLVHEAGYR 477 Query: 341 IERLALFDQFPYTRHME 357 + + + FP+T H+E Sbjct: 478 LSGAGVVNMFPHTSHVE 494 >gi|227889569|ref|ZP_04007374.1| possible tRNA (uracil-5-)-methyltransferase [Lactobacillus johnsonii ATCC 33200] gi|227849871|gb|EEJ59957.1| possible tRNA (uracil-5-)-methyltransferase [Lactobacillus johnsonii ATCC 33200] Length = 459 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 39/156 (25%), Positives = 73/156 (46%), Gaps = 15/156 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L++ Y G G ++ + +V+ +E +V A+ N NHV N + ++ + ++ Sbjct: 314 LIDAYAGVGTLGILASDQVRQVIGIESIPEAVIDAQENCRLNHVRNAEYIQGNVEKL--- 370 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330 L ++ + VDPPR+GL + +++ P +Y+SCNP +L + Sbjct: 371 ---------LPELKNQGVPINALIVDPPRTGLSKKLIKTLLEVKPETFVYVSCNPATLAK 421 Query: 331 DLSILSTTHTIERLALFDQFPYTRHME-CGVLLVRK 365 DL +LS + + + D P T E L++RK Sbjct: 422 DLVLLSEAYDVRVIQPVDMMPQTPRWEGVAKLVLRK 457 >gi|225076548|ref|ZP_03719747.1| hypothetical protein NEIFLAOT_01596 [Neisseria flavescens NRL30031/H210] gi|224952119|gb|EEG33328.1| hypothetical protein NEIFLAOT_01596 [Neisseria flavescens NRL30031/H210] Length = 441 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 48/177 (27%), Positives = 81/177 (45%), Gaps = 15/177 (8%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 FTQ NA +N M+ + +G+ + +L+CG GNFSL LA+ V+ +E A Sbjct: 269 GDFTQINAQLNEVMVARAVRLLNPQKGERIADLFCGLGNFSLPLAKSGASVVGIEGADYL 328 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 V+ AR N N + + S + F+ + I +F + +DPPR+G Sbjct: 329 VDRARENARLNRC--AENITFSVADL---------FDTDEKIVESWGQFDKMLLDPPRNG 377 Query: 304 LDDATVGMVQAY--PHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHME 357 + + + I+Y+SCNP + RD +L + + + + F T H+E Sbjct: 378 AYAVVKSLHKPFLPQKIVYVSCNPSTFARDAGVLVDKGYKFKAAGIMNMFAQTSHVE 434 >gi|42519480|ref|NP_965410.1| hypothetical protein LJ1606 [Lactobacillus johnsonii NCC 533] gi|51316713|sp|Q74IG2|Y1606_LACJO RecName: Full=Uncharacterized RNA methyltransferase LJ_1606 gi|41583768|gb|AAS09376.1| hypothetical protein LJ_1606 [Lactobacillus johnsonii NCC 533] Length = 459 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 38/153 (24%), Positives = 70/153 (45%), Gaps = 14/153 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L++ Y G G ++ + +V+ +E +V A+ N NHV N + ++ + ++ Sbjct: 314 LIDAYAGVGTLGILASDQVRQVIGIESIPEAVIDAQENCRLNHVRNAEYIQGNVEKL--- 370 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330 L ++ + VDPPR+GL + +++ P +Y+SCNP +L + Sbjct: 371 ---------LPELKNQGVPINALIVDPPRTGLSKKLIKTLLEVKPETFVYVSCNPATLAK 421 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363 DL +LS + + + D P T E LV Sbjct: 422 DLVLLSDAYDVRVIQPVDMMPQTPRWEGVTKLV 454 >gi|110677801|ref|YP_680808.1| RNA methyltransferase, putative [Roseobacter denitrificans OCh 114] gi|109453917|gb|ABG30122.1| RNA methyltransferase, putative [Roseobacter denitrificans OCh 114] Length = 408 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 49/178 (27%), Positives = 84/178 (47%), Gaps = 22/178 (12%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGI---QGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241 +F Q A H +LAA + I G +++L+ G G F+L LAR + V AVE Sbjct: 237 GAFLQATA----HGEAALLAAVRDITQDAGRIVDLFAGCGTFALPLARRCE-VHAVE--G 289 Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301 A + H +K V + R+ R + + R + +DPPR Sbjct: 290 DGDMTAALDAGWRHAQGLKNVTTET----------RDLFRRPLVPMELTRVDAVVLDPPR 339 Query: 302 SGLDDATVGMVQA-YPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHME 357 +G + V + +A P + Y+SCNP + RD ++L + + ++ + + DQF ++ H+E Sbjct: 340 AGAEAQVVELAEAAVPRLAYVSCNPVTFARDAAVLCAAGYVLDWVQVVDQFRWSAHVE 397 >gi|254252252|ref|ZP_04945570.1| tRNA (uracil-5-)-methyltransferase [Burkholderia dolosa AUO158] gi|124894861|gb|EAY68741.1| tRNA (uracil-5-)-methyltransferase [Burkholderia dolosa AUO158] Length = 465 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 73/277 (26%), Positives = 118/277 (42%), Gaps = 28/277 (10%) Query: 100 LRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTK 159 +R ++ QI+ S A+V + + +A E +R H ++ +Q G T Sbjct: 204 IRDRMPQIELAVGSSVTALVLRVLEPI--NAADEALLRAFADEHQVQFWLQPKGPDTVTP 261 Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYC 218 +D L G + ++ + FTQ N IN ++ L + D +L+L+C Sbjct: 262 FYPLDVSLDYTLPEFGIRMPFKPTD--FTQVNHQINRVLVGRALRLLAPSRDDRVLDLFC 319 Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278 G GNF+L LAR V+ +E ++ A N N V+ T A R Sbjct: 320 GIGNFTLPLARLAREVMGIEGSETLTTRALANARENGVDG---------HTTFACR--NL 368 Query: 279 FNRLKDIDIHSY-RFKTIFVDPPRSG---LDDATVGMVQAYP-----HILYISCNPDSLC 329 F D DI + F +DPPR G + A + Q+ I+Y+SCNP +L Sbjct: 369 FEVTAD-DIRALGAFDKFLIDPPREGALAVSKALAEIAQSGEGPLPMRIVYVSCNPSTLA 427 Query: 330 RDLSIL--STTHTIERLALFDQFPYTRHMECGVLLVR 364 RD +L + ++ + + FP+T H+E L R Sbjct: 428 RDAGLLVHEAGYRLKGAGVVNMFPHTSHVESIALFER 464 >gi|332977504|gb|EGK14277.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Psychrobacter sp. 1501(2011)] Length = 517 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 66/240 (27%), Positives = 106/240 (44%), Gaps = 32/240 (13%) Query: 137 RLRDALHARKYQIQLIGRANKT--KICL-DRDYVDERLTVAGR--------TLIYRQIEN 185 +L+ AR +Q+ L + ++ I L D D + E+ GR L Y I Sbjct: 280 KLKTFFKARSWQLYLQSKGPESIEHIALHDTDNLTEQF---GRLYYQLPEFDLTYEFIPT 336 Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 FTQ N +N M + G+ +L+L+ G GNFSL LAR + V Sbjct: 337 DFTQVNLSVNRKMTKLACDLLDLKPGERVLDLFSGLGNFSLPLARLVGGEDGSQGLAIGV 396 Query: 245 EAARYNIAANHVNNVKIVRMSSKEF-TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 E + + A +N K +++ EF Q + ++ D F I +DPPRSG Sbjct: 397 EGSDA-MTARAADNAKRNGITNTEFYNQDLTQD-----FSDQSWAQQGFDAILIDPPRSG 450 Query: 304 LDDATVGMVQAYPH-----ILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHME 357 + ++Q P I+Y+SCNP +L RD +++ + + + D F +T H+E Sbjct: 451 AWE----VMQYLPRFNASRIVYVSCNPATLARDTKALIEQGYRLTDAGVMDMFCHTGHVE 506 >gi|119504603|ref|ZP_01626682.1| hypothetical RNA methyltransferase [marine gamma proteobacterium HTCC2080] gi|119459625|gb|EAW40721.1| hypothetical RNA methyltransferase [marine gamma proteobacterium HTCC2080] Length = 391 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 51/183 (27%), Positives = 86/183 (46%), Gaps = 19/183 (10%) Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 F Q N N M EW+ A + D +LEL+ G+GNF+ VLA HF V+AVE + ++ Sbjct: 222 FRQGNTQQNAVMREWLAQAIASMPPDAPVLELFAGSGNFTEVLASHFKTVVAVEGDQQAL 281 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 + ++A V + + S +A E++ R+ + +DPPR GL Sbjct: 282 QQL-SDVAPERV-QAHALNLFSVPAVEAWVNEKQGIRV------------LVLDPPREGL 327 Query: 305 DDAT--VGMVQAYPHILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVL 361 T + + ++Y++C+ + RD L+ + ++ D FP T H+E + Sbjct: 328 KVRTPFLKELAELETVIYVACDLATWARDCKDFLAQGFRLAQVTPLDLFPQTPHLEVLSV 387 Query: 362 LVR 364 L R Sbjct: 388 LTR 390 >gi|221195076|ref|ZP_03568132.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Atopobium rimae ATCC 49626] gi|221184979|gb|EEE17370.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Atopobium rimae ATCC 49626] Length = 452 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 48/204 (23%), Positives = 93/204 (45%), Gaps = 23/204 (11%) Query: 168 DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVL 227 DERL+ +G + + +++ + N H + G +L+ YCG G + Sbjct: 246 DERLS-SGNSNCHTSRDDADFPSSGSSNCHTSRDRADSLSGCPLRILDAYCGTGTIGICA 304 Query: 228 ARHFD------RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281 A+ ++ V+ + ++ A+ N AN V+ + +++ Q +R ++ Sbjct: 305 AKEAGSRGIPVELIGVDQVENNIAMAKRNARANAVSARFVCDDATRFIAQEAKRGAPYD- 363 Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSIL-STT 338 + +DPPR+G + V+ A ++Y+SCN + RDL +L ++ Sbjct: 364 ------------VVVLDPPRAGSTPTFLKAVEQLAPKRVVYVSCNVVTQARDLEVLLASG 411 Query: 339 HTIERLALFDQFPYTRHMECGVLL 362 + ER+ D FP+T+H+E VLL Sbjct: 412 YKPERIVPVDMFPHTKHVETVVLL 435 >gi|307191668|gb|EFN75142.1| HpaII tiny fragments locus 9c protein [Harpegnathos saltator] Length = 576 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 44/165 (26%), Positives = 74/165 (44%), Gaps = 25/165 (15%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK-IVRMSSKEFTQ 271 LL++ CG G L ++H VL +E+ +++ A+ N N V N + V + + Sbjct: 412 LLDVCCGTGTIGLCFSKHCGEVLGIEVIPDAIKDAKENAIKNGVTNCEFFVGKAEDILSP 471 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA---TVGMVQAYPHILYISCNPDSL 328 ++R N T VDPPR+GL T+ V+ ++YISC+P + Sbjct: 472 VIQRATRSNI------------TAVVDPPRAGLHQKALLTLRKVKKLSRLVYISCDPRAA 519 Query: 329 CRDLSILSTTHTIERLA---------LFDQFPYTRHMECGVLLVR 364 ++L L+ + + L D FP+T+H E + L R Sbjct: 520 MKNLVDLARPSSKQYLGEPLVPVKAIAVDMFPHTKHCELILCLER 564 >gi|282851389|ref|ZP_06260754.1| conserved hypothetical protein [Lactobacillus gasseri 224-1] gi|282557357|gb|EFB62954.1| conserved hypothetical protein [Lactobacillus gasseri 224-1] Length = 226 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 43/157 (27%), Positives = 78/157 (49%), Gaps = 17/157 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L++ Y G G ++ + +V+ +E +V A+ N NHV N + ++ + ++ Sbjct: 78 LIDAYAGVGTLGILASDQVRQVIGIESIPEAVIDAQENCHLNHVRNAEYIQGNVEKLLPE 137 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330 ++ N+ ID + VDPPR+GL + +++ P +Y+SCNP +L + Sbjct: 138 LK-----NQGVPID-------ALIVDPPRTGLSKKLIKTLLEVKPETFVYVSCNPATLAK 185 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGV--LLVRK 365 DL +LS + + + D P T E GV L++RK Sbjct: 186 DLVLLSEAYDVRVIQPVDMMPQTPRWE-GVTKLVLRK 221 >gi|194467488|ref|ZP_03073475.1| RNA methyltransferase, TrmA family [Lactobacillus reuteri 100-23] gi|194454524|gb|EDX43421.1| RNA methyltransferase, TrmA family [Lactobacillus reuteri 100-23] Length = 467 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 46/164 (28%), Positives = 72/164 (43%), Gaps = 18/164 (10%) Query: 205 ATKGIQGD----LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK 260 A+K ++ D L++ Y G G L LA V +EI +V A N N++ N K Sbjct: 309 ASKALELDKDDTLIDAYAGIGTIGLSLASRVKAVRGMEIIPEAVADANENAKLNNIANAK 368 Query: 261 IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYP-HI 318 ++E ++E F + VDPPR+GLDD + + + P Sbjct: 369 YEVGKAEEVLPRWQKE------------GLNFDALVVDPPRTGLDDQLIKQILKVKPRKF 416 Query: 319 LYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362 Y+SC SL R+L L++ + ++ + D P T E V L Sbjct: 417 AYVSCGMASLARNLRRLTSVYHVDYIQPIDMMPQTARCEAVVKL 460 >gi|296116544|ref|ZP_06835154.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Gluconacetobacter hansenii ATCC 23769] gi|295976756|gb|EFG83524.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Gluconacetobacter hansenii ATCC 23769] Length = 425 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 52/187 (27%), Positives = 86/187 (45%), Gaps = 25/187 (13%) Query: 185 NSFTQPN-AG---INVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240 +F QP+ AG I +LE + TK ++GD++ELY G G S LA RV+A E Sbjct: 252 GAFLQPSRAGEDAIRCAILEAL--PTKRLKGDIIELYAGCGTLSFALAER-GRVMAHE-- 306 Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300 +AA + ++ + F R+ NR + + + +DPP Sbjct: 307 ---GDAAAFACLKQACGGTRV-----QPF------HRDLNRQPVMGAVLAKAGAVVLDPP 352 Query: 301 RSGLDDATVGMVQAYP-HILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMEC 358 +G + P +++Y+SCNP +L RD + L + ++RL + DQF ++ +E Sbjct: 353 HAGAGAQLHQITDGKPLNVIYVSCNPTALRRDATALRQAGYRLDRLTVIDQFLWSTEVES 412 Query: 359 GVLLVRK 365 L R Sbjct: 413 VCLFTRP 419 >gi|115387577|ref|XP_001211294.1| hypothetical protein ATEG_02116 [Aspergillus terreus NIH2624] gi|114195378|gb|EAU37078.1| hypothetical protein ATEG_02116 [Aspergillus terreus NIH2624] Length = 535 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 53/204 (25%), Positives = 93/204 (45%), Gaps = 31/204 (15%) Query: 179 IYRQIENSFTQPNAGINVHMLEWVL--AATKGIQGD------LLELYCGNGNFSLVLARH 230 ++ +F Q N I E++ A K Q D LL+ Y G+G F++ L+ Sbjct: 340 VFTNKAGAFFQNNNSILSGFTEYIRQHALPKDNQDDPKPIKYLLDAYSGSGLFTITLSPL 399 Query: 231 FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY 290 F L V++A+ S+ +AR N AN + N + KD+ + Sbjct: 400 FRSSLGVDVAEQSIVSARDNARANSLPNTGFAAADAATL------------FKDVPYPAE 447 Query: 291 RFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSIL-------STTHTI 341 + + +DPPR G D + + ++ ++Y+SCN + RD++++ + + I Sbjct: 448 Q-TLLVIDPPRKGCSDDFLRQLLSFGPRRVVYVSCNVHTQARDVAVMVQGDAQKNIRYEI 506 Query: 342 ERLALFDQFPYTRHMECGVLLVRK 365 E + FD FP T H+E GV ++ K Sbjct: 507 ESIRGFDFFPQTGHVE-GVAILNK 529 >gi|326406728|gb|ADZ63799.1| 23S rRNA uracil-5-methyltransferase [Lactococcus lactis subsp. lactis CV56] Length = 460 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 42/154 (27%), Positives = 71/154 (46%), Gaps = 22/154 (14%) Query: 211 GDL-LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269 GD+ ++ Y G G + +A +V +E+ +VE A+ N N + N ++++ Sbjct: 314 GDVVIDAYSGIGTIGISMADRVAKVYGMEVVPAAVENAKRNAQLNELENTHYEVGTAEKI 373 Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP-----HILYISCN 324 E + IFVDPPR GLD+ G ++A I+YISCN Sbjct: 374 MPKWLSE------------GIKPDVIFVDPPRKGLDE---GFIKAAAMMNPRRIVYISCN 418 Query: 325 PDSLCRD-LSILSTTHTIERLALFDQFPYTRHME 357 P + RD + + + ++++ D FP T H+E Sbjct: 419 PATFARDVVRFEAEGYLLDKVQPVDLFPQTHHIE 452 >gi|152968262|ref|YP_001364046.1| 23S rRNA methyluridine methyltransferase [Kineococcus radiotolerans SRS30216] gi|151362779|gb|ABS05782.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Kineococcus radiotolerans SRS30216] Length = 372 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 83/390 (21%), Positives = 150/390 (38%), Gaps = 58/390 (14%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-VPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60 S TL+ Y +Q+ +K +R R+++ A + + L RS YR +A+ + + Sbjct: 13 SCTLIELPYPRQVRDKEERCRELLAAHEGLRWLPSVRSPEAGYRNKAKMVVGGTVERPTF 72 Query: 61 IMFDQQTK--ERMRIDYFMPGSLLINALMIEMMATIRLEPL----LRAKLFQIDYLTSQS 114 + D + + PG L + ++ L P R +L + S S Sbjct: 73 GILDAAGRGVDLSECPVCAPGILDLLPVLARFTTRAGLVPYDVPRRRGELKNVLITESPS 132 Query: 115 DQAIVTLIYHRLLDDAWRECAIRLRDALHA-RKYQIQLIGRANKTKICLDRDYVDERLTV 173 + +V + +R +D L A R++ QL+ A + + + + V Sbjct: 133 GELMVRFV-------------LRSQDRLPALRRHLPQLLREAPRLAVVSVNLLPEHKAVV 179 Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGI-----------------QGDLLEL 216 G I + P G+++ + T + L +L Sbjct: 180 EGDVEIALTERTTLRMPMGGVDLDLRPQSFFQTNTVVARELYAQVARWVDEVAPASLWDL 239 Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276 YCG G F+L A RV +E++ A + V ++ + T+ Sbjct: 240 YCGVGGFALHCAAPGRRVTGIEVSA-----EAVESARAAAAGLPDVEFAAGDATRFALEA 294 Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSI 334 E L + V+PPR G+ G ++ H++Y SCNP +L +DL+ Sbjct: 295 PEAPEL------------VVVNPPRRGIGPELSGWLERSDVAHVVYSSCNPVTLAKDLAA 342 Query: 335 LSTTHTIERLALFDQFPYTRHMECGVLLVR 364 + + + R + D FP+T+H+E VLL R Sbjct: 343 MPSLRPV-RARVLDMFPHTQHVEVAVLLSR 371 >gi|300121541|emb|CBK22060.2| unnamed protein product [Blastocystis hominis] Length = 628 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 46/171 (26%), Positives = 71/171 (41%), Gaps = 26/171 (15%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 LL++ CG G L LA ++ V+I ++E AR N AN + N + + +++ Sbjct: 450 LLDVCCGTGTIGLCLASRVKFLIGVDIEASAIEDARLNAEANGIKNCEFICSPAEKVMAD 509 Query: 273 MRREREFNRLKD--IDIHSYRFKTIFVDPPRSGLDDATVGMVQ---AYPHILYISCNP-- 325 + + + RL + Y + VDPPRSGL + + A ++Y+SCNP Sbjct: 510 LLKREDIRRLDGSVALVVEYDHIVVIVDPPRSGLHKDIIPACRKCTAITELIYVSCNPTG 569 Query: 326 ------DSLCR---DLSILSTTHTIERLA----------LFDQFPYTRHME 357 SLC D + RL D FP+T H E Sbjct: 570 SFVENTGSLCVEHFDFVVTLCCQPNRRLPGDPFVAIKSQPVDLFPFTEHCE 620 >gi|256826666|ref|YP_003150625.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Cryptobacterium curtum DSM 15641] gi|256582809|gb|ACU93943.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Cryptobacterium curtum DSM 15641] Length = 543 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 56/196 (28%), Positives = 88/196 (44%), Gaps = 21/196 (10%) Query: 178 LIYRQIENSFTQPNAGINVHMLEWVL---AATKGIQG-DLLELYCGNGNFSLVLARHF-- 231 L +R +SF Q NA + L A T Q +L+ YCG G LV A Sbjct: 352 LSFRISSHSFYQVNAVQTEVLYRTALEMAACTSSHQALTILDAYCGTGTIGLVAASQVPN 411 Query: 232 DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291 +V+ ++ A S+ AR N N + N + + +F + R + ID+ Sbjct: 412 SQVIGIDNASSSIRDARQNAVHNGIANATFLCEDATDFL--LHRAAASD---SIDV---- 462 Query: 292 FKTIFVDPPRSGLDDATV--GMVQAYPHILYISCNPDSLCRDLSILS-TTHTIERLALFD 348 + +DPPR+G + A ++YISCNP + RD+ + + + + RL D Sbjct: 463 ---LMMDPPRAGSTSEFIEAACALAPERVVYISCNPATQKRDVRLFARGGYHLVRLRAVD 519 Query: 349 QFPYTRHMECGVLLVR 364 FP+T H+E LL+R Sbjct: 520 MFPHTDHIETVALLMR 535 >gi|46200920|ref|ZP_00056202.2| COG2265: SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Magnetospirillum magnetotacticum MS-1] Length = 234 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 53/186 (28%), Positives = 84/186 (45%), Gaps = 27/186 (14%) Query: 185 NSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP- 242 +F QP G + + E +++A +G+ + +LYCG G+FSL LA + P Sbjct: 66 GAFLQPTKGGELAIAEAIVSAIPEGVP--VADLYCGCGSFSLPLA----------LRGPV 113 Query: 243 -SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301 +VE + +AA + S E RR + LK ++ + +DPPR Sbjct: 114 HAVEGEQGPVAALDAAARREGLALSTEVRDLARRPLAVHELKA-------YRAVILDPPR 166 Query: 302 SGLDDATVGMVQAYPH----ILYISCNPDSLCRDLSILSTTH-TIERLALFDQFPYTRHM 356 +G + + P I +SCNP +L RDL L IE + DQFP++ H+ Sbjct: 167 AGAAAQAAELARPNPAGPATIAMVSCNPATLARDLRTLCDGGWHIEHIVPIDQFPWSTHL 226 Query: 357 ECGVLL 362 E +L Sbjct: 227 EAVTIL 232 >gi|229817410|ref|ZP_04447692.1| hypothetical protein BIFANG_02672 [Bifidobacterium angulatum DSM 20098] gi|229785199|gb|EEP21313.1| hypothetical protein BIFANG_02672 [Bifidobacterium angulatum DSM 20098] Length = 425 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 59/209 (28%), Positives = 94/209 (44%), Gaps = 27/209 (12%) Query: 169 ERLTVAGRTLIYRQIENSFTQ-----PNAGINVHMLEWVLAATKG-IQGDLLELYCGNGN 222 ER+TVAGR Y N F Q P A N H+++ V G + L +LY G+G Sbjct: 230 ERVTVAGREFSYMVDANGFWQVHRQAPIALAN-HVIDLVRGEMDGAVSAVLWDLYSGSGL 288 Query: 223 FSLVLARHF---DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279 F+L LA R+ +VE +V++ + N+ A +N+V + R + Sbjct: 289 FTLPLATMIAERTRMFSVEGGDAAVKSQQRNLRALGLNDVDV-------------RCGDV 335 Query: 280 NR-LKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDL-SIL 335 +R L + H + +DPPR+G + I+YI+C+ SL RD +I Sbjct: 336 SRTLAHVPAHLAHPDVVVLDPPRAGAHAKVCRQIAEAGARSIVYIACDCTSLARDTATIT 395 Query: 336 STTHTIERLALFDQFPYTRHMECGVLLVR 364 + + + +D +P T H+E L R Sbjct: 396 GLGYELADIHAYDIYPMTHHVETVALFRR 424 >gi|15673160|ref|NP_267334.1| hypothetical protein L193873 [Lactococcus lactis subsp. lactis Il1403] gi|50401787|sp|Q9CGB9|YLJE_LACLA RecName: Full=Uncharacterized RNA methyltransferase yljE gi|12724144|gb|AAK05276.1|AE006350_3 conserved hypothetical protein [Lactococcus lactis subsp. lactis Il1403] Length = 460 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 42/154 (27%), Positives = 71/154 (46%), Gaps = 22/154 (14%) Query: 211 GDL-LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269 GD+ ++ Y G G + +A +V +E+ +VE A+ N N + N ++++ Sbjct: 314 GDVVIDAYSGIGTIGISMADRVAKVYGMEVVPAAVENAKRNAQLNELENTHYEVGTAEKI 373 Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP-----HILYISCN 324 E + IFVDPPR GLD+ G ++A I+YISCN Sbjct: 374 MPKWLSE------------GIKPDVIFVDPPRKGLDE---GFIKAAAMMNPRRIVYISCN 418 Query: 325 PDSLCRD-LSILSTTHTIERLALFDQFPYTRHME 357 P + RD + + + ++++ D FP T H+E Sbjct: 419 PATFARDVVRFEADGYLLDKVQPVDLFPQTHHIE 452 >gi|323464012|gb|ADX76165.1| putative RNA methyltransferase, truncated [Staphylococcus pseudintermedius ED99] Length = 75 Score = 61.6 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 29/73 (39%), Positives = 43/73 (58%), Gaps = 2/73 (2%) Query: 295 IFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILSTTHTIERLALFDQFPY 352 + VDPPR G D + + A I+Y+SCNP + RD+ +LS + ++ + D FP+ Sbjct: 2 VTVDPPRKGCDATFIETLNALAPKRIVYVSCNPSTQLRDIEMLSAQYELKEMTPVDMFPH 61 Query: 353 TRHMECGVLLVRK 365 T H+E LLVRK Sbjct: 62 TTHVETVALLVRK 74 >gi|285808307|gb|ADC35838.1| 23S rRNA (uracil-5-)-methyltransferase RumA [uncultured bacterium 89] Length = 405 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 84/356 (23%), Positives = 144/356 (40%), Gaps = 56/356 (15%) Query: 10 YEQQLAEKVDRLRQMML---AFQVP-NLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ 65 YE QL+ K L + + FQ P ++ I +EP YR R + HI G ++ Sbjct: 91 YEAQLSAKRAILIETLTRVGKFQPPEDIHIVSAEPWGYRNRTQLHIAGTGIG----YLEE 146 Query: 66 QTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHR 125 ++ + +D S IN + ++A +R R + I+ T+++ + L R Sbjct: 147 RSHKLCPVDRCPISSPRINQAIGTLVAMVRDSRWPRF-VRSIELFTNETGLQLNVLESSR 205 Query: 126 LLDDAWRE-CAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + + E CA +L V + +YR Sbjct: 206 PVARHFFEWCAEQLGST-------------------------VSGPIEYPSGGALYRVSH 240 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 SF Q N + ++ L T+G +LY G G FS+ L + F +V AVE + +V Sbjct: 241 KSFFQVNRFLADQLVSLALEGTEGETA--ADLYAGVGLFSIPLRKRFAQVNAVESSGSAV 298 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 +N V V+ + S + + +F + DPPR+GL Sbjct: 299 RDLIFNAERAEV-AVETYQQPSAAYLHNLAAAPDF---------------VLADPPRAGL 342 Query: 305 D-DATVGMVQAYP-HILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHME 357 D + + + P I ++C+P +L RDL+ +L+ + I + + D FP T H+E Sbjct: 343 GKDVVMELARLQPRKITIVACDPATLARDLAGLLAAGYKINGVEMVDLFPQTFHIE 398 >gi|301619777|ref|XP_002939250.1| PREDICTED: tRNA (uracil-5-)-methyltransferase homolog [Xenopus (Silurana) tropicalis] Length = 384 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 48/174 (27%), Positives = 80/174 (45%), Gaps = 33/174 (18%) Query: 210 QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269 G LL+L CG G L LA +F V+ VE+ + +V AR+N N + N + + +++ Sbjct: 225 HGTLLDLCCGTGAIGLSLAGYFKNVIGVEMVEDAVLDARWNADFNGIENCQFLSGRAEKL 284 Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFV----DPPRSGLDDATVGMVQAYPHI---LYIS 322 ++ SY+ K + V +PPR+GL V ++ I L+++ Sbjct: 285 LP--------------NLLSYKQKELSVLAVANPPRAGLHPRVVRALRNCEDIRTLLFVT 330 Query: 323 CNPDS-LCRDLSILSTTHTIERLAL-----------FDQFPYTRHMECGVLLVR 364 C P+ R+L+ L ++E+ L D FP+T H E +LL R Sbjct: 331 CKPEGEATRNLTELCCAPSLEQKILGEAFVPQEALGVDLFPHTTHCELALLLTR 384 >gi|82776062|ref|YP_402409.1| 23S rRNA methyluridine methyltransferase [Shigella dysenteriae Sd197] gi|309786469|ref|ZP_07681093.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Shigella dysenteriae 1617] gi|123563144|sp|Q32ID7|RUMB_SHIDS RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName: Full=23S rRNA(M-5-U747)-methyltransferase gi|81240210|gb|ABB60920.1| putative enzyme [Shigella dysenteriae Sd197] gi|308925657|gb|EFP71140.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Shigella dysenteriae 1617] Length = 375 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 42/154 (27%), Positives = 70/154 (45%), Gaps = 18/154 (11%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + +L+CG G F L A ++ +EIA ++ A+ + A + ++ + S +F A Sbjct: 237 MWDLFCGVGGFGLHCATPDMQLTGIEIAPEAIACAKQSAAELGLTCLQFQALDSTQFATA 296 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCR 330 E + V+PPR G+ + A I+Y SCN ++ + Sbjct: 297 QGEVPEL---------------VLVNPPRRGIGKPLCDYLSTMAPCFIIYSSCNAQTMAK 341 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D+ L + IER+ LFD FP+T H E L V+ Sbjct: 342 DIRELPG-YRIERVQLFDMFPHTAHYEVLTLQVK 374 >gi|317484523|ref|ZP_07943432.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bilophila wadsworthia 3_1_6] gi|316924241|gb|EFV45418.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bilophila wadsworthia 3_1_6] Length = 449 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 47/155 (30%), Positives = 75/155 (48%), Gaps = 17/155 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L ++Y G G+ L + R+ RV+ +E +V AR N A K+ + +K Sbjct: 308 LWDVYGGVGSIGLYMGRN-ARVVGIEEMPGAVRYARGNAKALGRKAYKVEQGDAKSV--- 363 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG--MVQAYP-HILYISCNPDSLC 329 RL + + + VDPPR+G+D A V + +A P ++Y+SCNP +L Sbjct: 364 ------LGRLVKL---GPKPDVVVVDPPRAGID-AKVAQQLAEAAPLRLIYVSCNPATLA 413 Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 RD++ L+ ++ D FP T H+E LL R Sbjct: 414 RDVARLAPAFRLKAARPVDLFPQTPHVETVALLER 448 >gi|197104814|ref|YP_002130191.1| RNA methyltransferase, TrmA family [Phenylobacterium zucineum HLK1] gi|196478234|gb|ACG77762.1| RNA methyltransferase, TrmA family [Phenylobacterium zucineum HLK1] Length = 409 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 47/175 (26%), Positives = 80/175 (45%), Gaps = 16/175 (9%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 +F Q M E+V A G + +LYCG G F+ LA V A + A +V Sbjct: 242 GAFLQATRDAEAAMAEFVAGAAAGAS-RIADLYCGVGTFTFRLA-EVAPVHAADFAAEAV 299 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 +A +A +K V +++ +RR LK D+ + DPPR+G Sbjct: 300 QALTAALAG--APGLKGVTAEARDL---VRRPVLAEELKKTDVAVF-------DPPRAGA 347 Query: 305 DDATVGMVQA-YPHILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHME 357 + T + ++ ++ +SCNP + RD +++ +ER+ DQF ++ H+E Sbjct: 348 AEQTAELARSQVARVIGVSCNPATFARDARTLIDAGFRLERVLPVDQFLWSPHIE 402 >gi|58865360|ref|NP_001011895.1| tRNA (uracil-5-)-methyltransferase homolog A [Rattus norvegicus] gi|53733829|gb|AAH83619.1| TRM2 tRNA methyltransferase 2 homolog A (S. cerevisiae) [Rattus norvegicus] gi|149019780|gb|EDL77928.1| rCG36750, isoform CRA_a [Rattus norvegicus] Length = 615 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 46/165 (27%), Positives = 79/165 (47%), Gaps = 25/165 (15%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +L++ CG G L LA +V+ +E+ + +VE AR N N ++NV+ +++ Sbjct: 427 VLDVCCGTGTIGLALAPKVKKVIGIELCQEAVEDARMNALTNELSNVEFHCGRAEDLVPG 486 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHI---LYISCNPDS-- 327 + + +L + +DPPR+GL + ++ +I LY+SCNP + Sbjct: 487 LVSKLSSQQLVAV-----------LDPPRAGLHSKVILAMRKAENIKRLLYVSCNPRAAM 535 Query: 328 -----LCRDLS--ILSTT-HTIERLALFDQFPYTRHMECGVLLVR 364 LCR S + T H ++ +A+ D FP T H E +L R Sbjct: 536 GNFVDLCRAPSNRVKGTPFHPVKAVAV-DLFPQTPHCEMLILFER 579 >gi|329902596|ref|ZP_08273158.1| 23S rRNA (uracil-5-)-methyltransferase [Oxalobacteraceae bacterium IMCC9480] gi|327548743|gb|EGF33385.1| 23S rRNA (uracil-5-)-methyltransferase [Oxalobacteraceae bacterium IMCC9480] Length = 434 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 65/286 (22%), Positives = 123/286 (43%), Gaps = 27/286 (9%) Query: 83 INALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWR--ECAIRLRD 140 ++AL++ + I ++ ++ QI+ + + +VT++ R++ R E ++ Sbjct: 157 VSALLVPLRELIAALSIVE-QIPQIELAVGEGNDGVVTVLVLRIMAPLSRADEVLLKAFA 215 Query: 141 ALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLE 200 LH + +Q G + + L G T+ ++ + FTQ N IN ++ Sbjct: 216 DLHQIVWWLQAAGPESAVPYYPANQSLQYSLPEFGITMPFKPTD--FTQVNHQINRVLVA 273 Query: 201 WVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN 258 L Q D + +L+CG GNF+L +A V+ +E + + A N N V + Sbjct: 274 RALRLLDA-QPDERIADLFCGLGNFTLPIATQARAVVGIEGSTALTQRAMDNARFNGVQD 332 Query: 259 VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR-FKTIFVDPPRSGLDDATVGMVQAYP- 316 F R + D+ + F + +DPPR G + + P Sbjct: 333 -------KTSFGC-----RNLFDITGADLVALGYFDRLLIDPPRDGAMALCEALAELQPA 380 Query: 317 ----HILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHME 357 I+Y+SCNP +L RD +L + + + + + + FP+T H+E Sbjct: 381 QKPRRIVYVSCNPATLARDAQLLVAGGYVLSQAGVVNMFPHTAHVE 426 >gi|322515717|ref|ZP_08068685.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Actinobacillus ureae ATCC 25976] gi|322118207|gb|EFX90509.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Actinobacillus ureae ATCC 25976] Length = 391 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 37/159 (23%), Positives = 72/159 (45%), Gaps = 23/159 (14%) Query: 215 ELYCGNGNFSLVLARHFD------RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268 +L+CG G F L A+ ++ +EI+ ++ +A + + N+ + S + Sbjct: 247 DLFCGVGGFGLHCAKALQEKNENVQLTGIEISASAIASATKSAEQLQLKNITFASLDSAQ 306 Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPD 326 F E D+ + V+PPR G+ + P+++Y SCN Sbjct: 307 FAL-----NEKGATPDL---------VIVNPPRRGIGKPLAEFLNQLGTPYLIYSSCNAQ 352 Query: 327 SLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 ++ +D LS ++++++ L D FP+T H E L++K Sbjct: 353 TMAKDFEALSN-YSLQKVQLLDMFPHTSHYEVLTFLIKK 390 >gi|238027066|ref|YP_002911297.1| 23S rRNA 5-methyluridine methyltransferase [Burkholderia glumae BGR1] gi|237876260|gb|ACR28593.1| RNA methyltransferase, TrmA family protein [Burkholderia glumae BGR1] Length = 464 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 55/182 (30%), Positives = 83/182 (45%), Gaps = 22/182 (12%) Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 FTQ N IN ++ L +GD +L+L+CG GNF+L LAR V+ +E ++ Sbjct: 286 FTQVNHQINRVLVGRALRLLAPRRGDRVLDLFCGIGNFTLPLARLSREVVGIEGSEVLTT 345 Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG-- 303 A N AN V+ + F E + L+ + F VDPPR G Sbjct: 346 RALENAKANGVD-------AHTSFACRNLFEVTADDLRALG----GFDKFLVDPPREGAL 394 Query: 304 -LDDATVGMVQA----YPH-ILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTRH 355 + A + Q+ P I+Y+SCNP +L RD +L + + + + FP T H Sbjct: 395 AVSKALAEIAQSGDGPLPQRIVYVSCNPATLARDAGLLVHEAGYRLRGAGVVNMFPNTSH 454 Query: 356 ME 357 +E Sbjct: 455 VE 456 >gi|315023445|gb|EFT36453.1| RNA methyltransferase [Riemerella anatipestifer RA-YM] gi|325335993|gb|ADZ12267.1| SAM-dependent methyltransferase, tRNA (uracil-5-)-methyltransferase-like protein [Riemerella anatipestifer RA-GD] Length = 469 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 41/161 (25%), Positives = 74/161 (45%), Gaps = 17/161 (10%) Query: 209 IQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266 ++GD + +LY G G + +AR +V+ +E ++ AA+ + N ++N Sbjct: 320 LKGDEVVYDLYTGTGTIAQFVARKAKQVIGIESVPEAIAAAKEHAKHNGLDNCTFYCGDM 379 Query: 267 KE-FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISC 323 K+ FT + + + DPPR G+ V + A I+Y+SC Sbjct: 380 KDIFTDEFLAQHP------------KADVLITDPPRDGMHQKVVEQILKLAPEKIVYVSC 427 Query: 324 NPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 N + RDL+++ + +E++ D FP T H+E LL + Sbjct: 428 NSATQARDLALMKEHYRVEKILPVDMFPQTHHIENIALLKK 468 >gi|33865762|ref|NP_897321.1| hypothetical protein SYNW1228 [Synechococcus sp. WH 8102] gi|50401510|sp|Q7U6V8|Y1228_SYNPX RecName: Full=Uncharacterized RNA methyltransferase SYNW1228 gi|33632932|emb|CAE07743.1| conserved hypothetical protein [Synechococcus sp. WH 8102] Length = 465 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 49/165 (29%), Positives = 76/165 (46%), Gaps = 21/165 (12%) Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVN 257 ++ W+ A + G +++ YCG G SL LA V+ +EI S++ AR N AN + Sbjct: 307 IVSWLSQAE--LAGPIVDAYCGIGTISLPLAAQGHHVVGLEINPDSIDQARSNADANGLG 364 Query: 258 NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH 317 + EF N LK+ + VDPPR GL+ + + + + P Sbjct: 365 -------ARTEFQAG----DVANLLKET---LATCSALVVDPPRRGLESSVIEAILSDPP 410 Query: 318 IL--YISCNPDSLCRDLSIL---STTHTIERLALFDQFPYTRHME 357 L Y+SC+ + RDL L + +E+L D FP T H+E Sbjct: 411 GLLAYLSCDMATQARDLKRLLQPEGPYRLEQLQPVDFFPQTTHLE 455 >gi|194290012|ref|YP_002005919.1| 23S rRNA 5-methyluridine methyltransferase [Cupriavidus taiwanensis LMG 19424] gi|193223847|emb|CAQ69856.1| 23S rRNA (Uracil-5-)-methyltransferase rumA (23S rRNA(M-5-U1939)-methyltransferase) [Cupriavidus taiwanensis LMG 19424] Length = 487 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 54/183 (29%), Positives = 80/183 (43%), Gaps = 24/183 (13%) Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 FTQ N IN ++ L GD LL+L+CG GNF+L LA V+ +E ++ Sbjct: 309 FTQVNHQINRVLIGRALRLLDAQPGDRLLDLFCGIGNFTLPLATQGKSVMGIEGSEALTT 368 Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY-RFKTIFVDPPRSG- 303 A N N + + EF R + DI + RF VDPPR G Sbjct: 369 RALANAEYNGL-------AAKTEFAC-----RNLFEVTADDIAALGRFDRWLVDPPREGA 416 Query: 304 --LDDATVGMVQAYPHIL-----YISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTR 354 + A + Q +L Y+SC+P +L RD +L + + + + FP+T Sbjct: 417 LAVSKALGELAQQGSDVLPRRIVYVSCSPATLARDAGLLVHEAGYRLSGAGVVNMFPHTS 476 Query: 355 HME 357 H+E Sbjct: 477 HVE 479 >gi|313206559|ref|YP_004045736.1| 23S rRNA m(5)u-1939 methyltransferase [Riemerella anatipestifer DSM 15868] gi|312445875|gb|ADQ82230.1| 23S rRNA m(5)U-1939 methyltransferase [Riemerella anatipestifer DSM 15868] Length = 469 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 41/161 (25%), Positives = 74/161 (45%), Gaps = 17/161 (10%) Query: 209 IQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266 ++GD + +LY G G + +AR +V+ +E ++ AA+ + N ++N Sbjct: 320 LKGDEVVYDLYTGTGTIAQFVARKAKQVIGIESVPEAIAAAKEHAKHNGLDNCTFYCGDM 379 Query: 267 KE-FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISC 323 K+ FT + + + DPPR G+ V + A I+Y+SC Sbjct: 380 KDIFTDEFLAQHP------------KADVLITDPPRDGMHQKVVEQILKLAPEKIVYVSC 427 Query: 324 NPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 N + RDL+++ + +E++ D FP T H+E LL + Sbjct: 428 NSATQARDLALMKEHYRVEKILPVDMFPQTHHIENIALLKK 468 >gi|315282665|ref|ZP_07871022.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria marthii FSL S4-120] gi|313613689|gb|EFR87476.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria marthii FSL S4-120] Length = 101 Score = 61.2 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 32/79 (40%), Positives = 46/79 (58%), Gaps = 4/79 (5%) Query: 290 YRFKTIFVDPPRSGLDDATVGM---VQAYPHILYISCNPDSLCRDLSILSTTHTIERLAL 346 +R + VDPPRSG D + V+A ++Y+SCNP +L RDL++L+ + I + Sbjct: 23 FRPDAVIVDPPRSGCDQGLIKSLLEVEA-KQLVYVSCNPSTLARDLALLAKKYRIRYMQP 81 Query: 347 FDQFPYTRHMECGVLLVRK 365 D FP T H+E VLL K Sbjct: 82 VDMFPQTAHVETVVLLQLK 100 >gi|260428897|ref|ZP_05782874.1| hypothetical protein CSE45_3393 [Citreicella sp. SE45] gi|260419520|gb|EEX12773.1| hypothetical protein CSE45_3393 [Citreicella sp. SE45] Length = 407 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 52/162 (32%), Positives = 79/162 (48%), Gaps = 20/162 (12%) Query: 202 VLAATKGIQGD---LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN 258 +LA + GD +++L+ G G F+L LA + RV AVE K A V Sbjct: 250 LLAGVREAVGDASHIVDLFAGCGTFALPLAENA-RVHAVEGDK-----------AMTVAL 297 Query: 259 VKIVRMSSK-EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA-YP 316 K RM+ + R+ N L D+H RF +DPPR+G + + A P Sbjct: 298 DKGWRMAEGLRHVTSEARDLFRNPLLPEDLH--RFDAAVIDPPRAGAEAQVAELAAARIP 355 Query: 317 HILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHME 357 I ++SCNP + RD S+L +T++ L + DQF ++ H+E Sbjct: 356 RIAFVSCNPVTFARDASVLVGAGYTLDWLQVVDQFRWSTHVE 397 >gi|189350615|ref|YP_001946243.1| 23S rRNA 5-methyluridine methyltransferase [Burkholderia multivorans ATCC 17616] gi|189334637|dbj|BAG43707.1| SAM-dependent methyltransferase [Burkholderia multivorans ATCC 17616] Length = 465 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 58/190 (30%), Positives = 82/190 (43%), Gaps = 24/190 (12%) Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 FTQ N IN ++ L + D +L+L+CG GNF+L LAR V+ +E ++ Sbjct: 287 FTQVNHQINRVLVGRALRLLAPARDDRVLDLFCGIGNFTLPLARLAREVVGIEGSETLTT 346 Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY-RFKTIFVDPPRSG- 303 A N N V+ T A R F D DI + F +DPPR G Sbjct: 347 RALANARENGVDG---------HTTFACR--NLFEVTAD-DIRALGAFDKFLIDPPREGA 394 Query: 304 -------LDDATVGMVQAYPHILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTR 354 D A G I+Y+SCNP +L RD +L + ++ + + FP T Sbjct: 395 LAVSKALADIAQSGEGPLPKRIVYVSCNPSTLARDAGLLVHEAGYRLKGAGVVNMFPNTS 454 Query: 355 HMECGVLLVR 364 H+E L R Sbjct: 455 HVESIALFER 464 >gi|324997158|ref|ZP_08118270.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Pseudonocardia sp. P1] Length = 404 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 59/173 (34%), Positives = 79/173 (45%), Gaps = 28/173 (16%) Query: 200 EWVLAATKGIQGDLLELYCGNGNFSLVLARHFD---RVLAVEIAKPSVEAARYNIAANHV 256 EW A G+ DL Y G G VLAR VL VE + PS A A + Sbjct: 251 EWAGAPRGGVAWDL---YGGVGLLGSVLARQVGPDGTVLVVE-SSPSAVAD-GAAALADL 305 Query: 257 NNVKIVRMSSKEFTQAMRREREFNRLK-DIDIHSYRFKTIFVDPPRSGLDDATV-GMVQA 314 V VR R ERE RL+ D D+ + DPPR+GL A V + Sbjct: 306 PQVSFVRG---------RAEREIARLRPDPDV-------VVTDPPRTGLGRAAVRALATR 349 Query: 315 YPH-ILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVRK 365 P +++++C+P +L RDL++ + + + L FD FP T HME LL R Sbjct: 350 GPRRVVHVACDPAALGRDLALFAEHGYRVAGLRAFDAFPMTHHMEAVALLERP 402 >gi|257464907|ref|ZP_05629278.1| 23S rRNA methyluridine methyltransferase [Actinobacillus minor 202] gi|257450567|gb|EEV24610.1| 23S rRNA methyluridine methyltransferase [Actinobacillus minor 202] Length = 391 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 40/159 (25%), Positives = 71/159 (44%), Gaps = 23/159 (14%) Query: 215 ELYCGNGNFSLVLARHFD------RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268 +L+CG G F L A+ + +EI+ ++ +A + + NV + S + Sbjct: 247 DLFCGVGGFGLHCAKALQDTNPEVTLTGIEISASALASATQSAEKLGLKNVTFASLDSAQ 306 Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPD 326 F E + D+ + V+PPR G+ A + P+++Y SCN Sbjct: 307 FAL-----NEKGSVPDL---------VIVNPPRRGIGKALAEYLNQLGSPYVIYSSCNAK 352 Query: 327 SLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 ++ D + + + ++ LFD FP+T H E LLV+K Sbjct: 353 TMAEDFASFDN-YVLAKVQLFDMFPHTAHYEVLTLLVKK 390 >gi|119717975|ref|YP_924940.1| 23S rRNA methyluridine methyltransferase [Nocardioides sp. JS614] gi|119538636|gb|ABL83253.1| 23S rRNA m(5)U-747 methyltransferase [Nocardioides sp. JS614] Length = 379 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 52/184 (28%), Positives = 79/184 (42%), Gaps = 20/184 (10%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKP 242 SF Q N + + A T + G + +LYCG G F+L +A V VE++ Sbjct: 211 QSFFQTNTAMAAELYRLARAWTAELAPGRVWDLYCGVGGFALAIASTAHAEVTGVEVSGE 270 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302 ++ +A A+ + VR + + T + + L + V+PPR Sbjct: 271 AIASA---TASAREAGLDRVRFEAGDATAWVSDRPDVPDL------------VVVNPPRR 315 Query: 303 GLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360 GL G ++ H+LY SCN +L RDL + + + R L D FP T H E Sbjct: 316 GLGPELSGWLEDSGVRHVLYSSCNAHTLARDLDAMPSLRPV-RAQLLDMFPNTAHYEVLA 374 Query: 361 LLVR 364 LL R Sbjct: 375 LLER 378 >gi|319779692|ref|YP_004130605.1| RNA methyltransferase, TrmA family [Taylorella equigenitalis MCE9] gi|317109716|gb|ADU92462.1| RNA methyltransferase, TrmA family [Taylorella equigenitalis MCE9] Length = 439 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 50/187 (26%), Positives = 83/187 (44%), Gaps = 31/187 (16%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 + FTQ N IN M+ L + Q D + +L+CG GNF+L L+ V+ +E ++ Sbjct: 262 SDFTQVNPFINRTMIRRALDLLEVHQNDRVADLFCGLGNFTLPLSTIAKEVVGIEGSESL 321 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY------RFKTIFV 297 + A A NH ++ + +F+ L ++ S F + + Sbjct: 322 TKRAMQG-AQNH----------------GLQDKVKFSTLNLFEVDSTWLEGLGAFDKMLL 364 Query: 298 DPPRSGLDDATVGMVQAYPH-----ILYISCNPDSLCRDLSIL--STTHTIERLALFDQF 350 DPPR G + P I+Y+SCNP +L RD +L S + + + + F Sbjct: 365 DPPRDGAFAVCKALTAMNPSLRPKRIVYVSCNPSTLARDADVLVNSGAYKLLGAGVINMF 424 Query: 351 PYTRHME 357 P+T H+E Sbjct: 425 PHTAHVE 431 >gi|221632250|ref|YP_002521471.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Thermomicrobium roseum DSM 5159] gi|221157158|gb|ACM06285.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Thermomicrobium roseum DSM 5159] Length = 406 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 49/182 (26%), Positives = 88/182 (48%), Gaps = 21/182 (11%) Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFSLVLARHFDRVLAVE 238 +R +SF Q N + +++ VL +++ + Y G G F+ LA RV+ +E Sbjct: 230 FRISASSFFQTNTAVAERLIQLVLERIAPTGNEVVVDAYAGVGTFAAFLAPRVARVIGIE 289 Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298 + +V A+ N+ + +NV E+ QA + E +L + R + +D Sbjct: 290 ESPSAVSDAQVNL--DPFDNV--------EYVQA-KVEHVLGKL------AVRPDVVILD 332 Query: 299 PPRSGL-DDATVGMVQA-YPHILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRH 355 PPR G +A G++ P ++Y+SC+P +L RDL ++ + + + D FP T H Sbjct: 333 PPRVGCAPEALTGVLMLRPPRLIYVSCDPATLARDLRKLVDGGYRLLDVTPLDMFPQTYH 392 Query: 356 ME 357 +E Sbjct: 393 IE 394 >gi|219848732|ref|YP_002463165.1| (Uracil-5)-methyltransferase [Chloroflexus aggregans DSM 9485] gi|219542991|gb|ACL24729.1| (Uracil-5)-methyltransferase [Chloroflexus aggregans DSM 9485] Length = 398 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 51/184 (27%), Positives = 76/184 (41%), Gaps = 17/184 (9%) Query: 185 NSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 N+F Q N + ++ + V AA + +LY G G L LAR V VE S Sbjct: 228 NTFFQNNVYLADRLIGDAVAAANPNPTMRVADLYGGVGAIGLHLARRAAVVDCVEAVAES 287 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 A++N N + N + + + QA S I DPPR+G Sbjct: 288 ATLAQHNAVVNGITNFNPICADTLAYLQAQ--------------PSGSLPLIVADPPRTG 333 Query: 304 LDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVL 361 L + I+Y+SCNP + DL +L + + L +D FP+T H+E + Sbjct: 334 LGPQVCKELLRIGAQRIVYVSCNPLTQVSDLRLLQAAYRVTDLRGYDMFPHTPHVETIAV 393 Query: 362 LVRK 365 L R Sbjct: 394 LERS 397 >gi|145254861|ref|XP_001398782.1| tRNA(m5U54)methyltransferase [Aspergillus niger CBS 513.88] gi|134084367|emb|CAK48706.1| unnamed protein product [Aspergillus niger] Length = 533 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 46/164 (28%), Positives = 76/164 (46%), Gaps = 23/164 (14%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 LL+ Y G+G F++ L+ F L V++A S+ +AR N N + N + Sbjct: 379 LLDAYSGSGLFTITLSPLFKSSLGVDVAGDSIASARDNARDNKLPNTGFAAADAATL--- 435 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCR 330 KD+ + + +DPPR G D + + A+ ++Y+SCN + R Sbjct: 436 ---------FKDVPYPPDQ-TLLVIDPPRKGCSDDFLRQLLAFGPRRVVYVSCNVHTQAR 485 Query: 331 DLSILSTTHT-------IERLALFDQFPYTRHMECGVLLVRKPS 367 D++++ T IE + FD FP T H+E GV ++ K S Sbjct: 486 DVAVMVQGDTEKKIRYEIESIRGFDFFPQTGHVE-GVAILNKTS 528 >gi|116512081|ref|YP_809297.1| tRNA (uracil-5-)-methyltransferase related enzyme [Lactococcus lactis subsp. cremoris SK11] gi|116107735|gb|ABJ72875.1| tRNA (uracil-5-)-methyltransferase related enzyme [Lactococcus lactis subsp. cremoris SK11] Length = 456 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 41/152 (26%), Positives = 68/152 (44%), Gaps = 16/152 (10%) Query: 211 GDL-LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269 GD+ ++ Y G G + +A V +E+ +VE A+ N N + N ++++ Sbjct: 310 GDIVIDAYSGIGTIGISMADRVAEVYGMEVVPAAVENAKRNAQLNELENTHYEVGTAEKI 369 Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDS 327 E + IFVDPPR GLD+ + A I+YISCNP + Sbjct: 370 MPKWLDE------------GIKPDVIFVDPPRKGLDETFIKSATATNPRRIVYISCNPAT 417 Query: 328 LCRD-LSILSTTHTIERLALFDQFPYTRHMEC 358 RD + + + ++++ D FP T H+E Sbjct: 418 FARDVVRFENEGYILDKVQPVDLFPQTHHIEL 449 >gi|332637541|ref|ZP_08416404.1| 23S rRNA (uracil-5-)-methyltransferase [Weissella cibaria KACC 11862] Length = 459 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 57/181 (31%), Positives = 86/181 (47%), Gaps = 21/181 (11%) Query: 185 NSFTQPNAGINVHMLEWVLAATKG--IQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAK 241 NSF Q N + + +AATKG + D +++ Y G G L +A D+VL VE+ + Sbjct: 284 NSFYQVNP--QTTEVLYDMAATKGELKESDTVIDAYSGIGTIGLTVADRVDKVLGVEVIE 341 Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301 +V A+ N+A N+V N + V + E + + KD + IFVDPPR Sbjct: 342 RAVIDAQKNVANNNVQNAEFVTADAPE---------QMQKWKD---GGLKPDVIFVDPPR 389 Query: 302 SGLDDATVGMVQAY--PHILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTRHME 357 GL + + V +Y+SCNP+++ RD L + DQFP T H+E Sbjct: 390 RGLTEELLDAVADMNPDRFVYVSCNPETMARDARYLIDKGFRIKGDIQPLDQFPQTAHVE 449 Query: 358 C 358 Sbjct: 450 A 450 >gi|291459844|ref|ZP_06599234.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Oribacterium sp. oral taxon 078 str. F0262] gi|291417634|gb|EFE91353.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Oribacterium sp. oral taxon 078 str. F0262] Length = 466 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 59/240 (24%), Positives = 98/240 (40%), Gaps = 20/240 (8%) Query: 137 RLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINV 196 R+R LH R + T+I D++ E L L +R SF Q N+ + Sbjct: 229 RIRGILHTRNDALSDAVIDEGTEILWGEDFICEELL----GLRFRISPFSFFQTNS-LGA 283 Query: 197 HML--------EWVLAATKGIQGDLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA 247 L L A +G Q ++ +LY G G + +++ + +E+ +V AA Sbjct: 284 EKLYSKIRDYAALSLPAGRGGQKPVIYDLYSGTGTITQLMSLAASLSIGIELVPEAVRAA 343 Query: 248 RYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307 R N N + N + + + + E R + I +DPPR G+ Sbjct: 344 RENARDNGITNCAFF---AGDVLKVISEGEELIREDGSRYPAPHPDLIILDPPRDGIHPK 400 Query: 308 TVGMVQAY--PHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364 + + AY P ++Y++C P S RDL L + ++ D FP T + E LL + Sbjct: 401 ALRKIIAYASPALIYVACKPKSFARDLLPLQEAGYRLQSCCPVDMFPQTNNCELVALLSK 460 >gi|125624135|ref|YP_001032618.1| putative RNA methyltransferase [Lactococcus lactis subsp. cremoris MG1363] gi|124492943|emb|CAL97906.1| putative RNA methyltransferase [Lactococcus lactis subsp. cremoris MG1363] gi|300070909|gb|ADJ60309.1| putative RNA methyltransferase [Lactococcus lactis subsp. cremoris NZ9000] Length = 456 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 41/152 (26%), Positives = 68/152 (44%), Gaps = 16/152 (10%) Query: 211 GDL-LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269 GD+ ++ Y G G + +A V +E+ +VE A+ N N + N ++++ Sbjct: 310 GDIVIDAYSGIGTIGISMADRVAEVYGMEVVPAAVENAKRNAQLNELENTHYEVGTAEKI 369 Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDS 327 E + IFVDPPR GLD+ + A I+YISCNP + Sbjct: 370 MPKWLDE------------GIKPDVIFVDPPRKGLDETFIKSATATNPRRIVYISCNPAT 417 Query: 328 LCRD-LSILSTTHTIERLALFDQFPYTRHMEC 358 RD + + + ++++ D FP T H+E Sbjct: 418 FARDVVRFENEGYILDKVQPVDLFPQTHHIEL 449 >gi|308233546|ref|ZP_07664283.1| RNA methyltransferase, TrmA family protein [Atopobium vaginae DSM 15829] gi|328944339|ref|ZP_08241803.1| TrmA family RNA methyltransferase [Atopobium vaginae DSM 15829] gi|327491258|gb|EGF23033.1| TrmA family RNA methyltransferase [Atopobium vaginae DSM 15829] Length = 449 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 45/155 (29%), Positives = 75/155 (48%), Gaps = 23/155 (14%) Query: 214 LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS-KEFTQA 272 L+LYCG G F+L LA+ V+ VE S++ R +I +++NV+ + + +E+ +A Sbjct: 310 LDLYCGAGTFTLPLAQRARDVIGVEAQGSSIQDLRRHIKLFNLHNVQAIGGDALREYPKA 369 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCR 330 H+ I VDPPR+GL+ + I Y+SC+P +L R Sbjct: 370 ---------------HA---DVIVVDPPRAGLEAGVCDKLSQSGARAIAYVSCDPQTLAR 411 Query: 331 DLS--ILSTTHTIERLALFDQFPYTRHMECGVLLV 363 D+ I + ++ D FP + H+E LL+ Sbjct: 412 DIRRFIDKGAYLPAKITPVDLFPQSWHIENVCLLL 446 >gi|73995903|ref|XP_534759.2| PREDICTED: similar to HpaII tiny fragments locus 9C [Canis familiaris] Length = 667 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 48/170 (28%), Positives = 76/170 (44%), Gaps = 25/170 (14%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +L++ CG G L LA RV+ +E+ + +VE AR N N ++NV+ +++ A Sbjct: 477 VLDVCCGTGTIGLALAPRVKRVVGIELCQEAVEDARVNARDNELSNVEFHCGRAEDLVPA 536 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV---QAYPHILYISCNPDS-- 327 + +RL + +DPPR+GL + V + +LY+SCNP + Sbjct: 537 L-----VSRLASQQL------VAILDPPRAGLHSKVILAVRRAENLKRLLYVSCNPRAAM 585 Query: 328 -----LCRDLS--ILSTTHTIERLALFDQFPYTRHMECGVLL--VRKPSG 368 LCR S + + D FP T H E +L V P+G Sbjct: 586 GNFVDLCRAPSNRVKGVPFRPVKAVAVDLFPQTPHCEMLILFERVEHPNG 635 >gi|221198086|ref|ZP_03571132.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia multivorans CGD2M] gi|221204355|ref|ZP_03577372.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia multivorans CGD2] gi|221175212|gb|EEE07642.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia multivorans CGD2] gi|221182018|gb|EEE14419.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia multivorans CGD2M] Length = 503 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 57/190 (30%), Positives = 82/190 (43%), Gaps = 24/190 (12%) Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 FTQ N IN ++ L + D +L+L+CG GNF+L LAR V+ +E ++ Sbjct: 325 FTQVNHQINRVLVGRALRLLAPARDDRVLDLFCGIGNFTLPLARLAREVVGIEGSETLTT 384 Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY-RFKTIFVDPPRSG- 303 A N N V+ T A R E + DI + F +DPPR G Sbjct: 385 RALANARENGVDG---------HTTFACRNLFE---VTADDIRALGAFDKFLIDPPREGA 432 Query: 304 -------LDDATVGMVQAYPHILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTR 354 D A G I+Y+SCNP +L RD +L + ++ + + FP T Sbjct: 433 LAVSKALADIAQSGEGPLPKRIVYVSCNPSTLARDAGLLVHEAGYRLKGAGVVNMFPNTS 492 Query: 355 HMECGVLLVR 364 H+E L R Sbjct: 493 HVESIALFER 502 >gi|221212764|ref|ZP_03585740.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia multivorans CGD1] gi|221166977|gb|EED99447.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia multivorans CGD1] Length = 487 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 57/190 (30%), Positives = 82/190 (43%), Gaps = 24/190 (12%) Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 FTQ N IN ++ L + D +L+L+CG GNF+L LAR V+ +E ++ Sbjct: 309 FTQVNHQINRVLVGRALRLLAPARDDRVLDLFCGIGNFTLPLARLAREVVGIEGSETLTT 368 Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY-RFKTIFVDPPRSG- 303 A N N V+ T A R E + DI + F +DPPR G Sbjct: 369 RALANARENGVDG---------HTTFACRNLFE---VTADDIRALGAFDKFLIDPPREGA 416 Query: 304 -------LDDATVGMVQAYPHILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTR 354 D A G I+Y+SCNP +L RD +L + ++ + + FP T Sbjct: 417 LAVSKALADIAQSGEGPLPKRIVYVSCNPSTLARDAGLLVHEAGYRLKGAGVVNMFPNTS 476 Query: 355 HMECGVLLVR 364 H+E L R Sbjct: 477 HVESIALFER 486 >gi|10437555|dbj|BAB15067.1| unnamed protein product [Homo sapiens] Length = 475 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 48/170 (28%), Positives = 76/170 (44%), Gaps = 25/170 (14%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +L++ CG G L LAR RV+ VE+ +VE AR N N ++NV+ +++ Sbjct: 286 VLDVCCGTGTIGLALARKVKRVIGVELCPEAVEDARVNAQDNELSNVEFHCGRAEDLVPT 345 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH---ILYISCNPDS-- 327 + +RL + +DPPR+GL + ++ + +LY+SCNP + Sbjct: 346 L-----VSRLASQHL------VAILDPPRAGLHSKVILAIRRAKNLRRLLYVSCNPRAAM 394 Query: 328 -----LCRDLS--ILSTTHTIERLALFDQFPYTRHMECGVLL--VRKPSG 368 LCR S + + D FP T H E +L V P+G Sbjct: 395 GNFVDLCRAPSNRVKGIPFRPVKAVAVDLFPQTPHCEMLILFERVEHPNG 444 >gi|301089440|ref|XP_002895021.1| RNA methyltransferase [Phytophthora infestans T30-4] gi|262104003|gb|EEY62055.1| RNA methyltransferase [Phytophthora infestans T30-4] Length = 545 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 47/192 (24%), Positives = 86/192 (44%), Gaps = 21/192 (10%) Query: 185 NSFTQPN---AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241 +SF QPN A + ++ ++AA + + +L+CG G+ + + + ++V+ E+ Sbjct: 341 DSFFQPNSNQASVLYREIQRMMAALPK-KPVVWDLFCGVGSIGICMGAYAEKVVGFELVD 399 Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT----IFV 297 +VE A+ N N + ++ + ++ + E +R+ + V Sbjct: 400 AAVERAKVNARLNGYS-ADHMQFFCVDLAKSWQEEEFLDRIASHSDGGSSSSNLPDIVIV 458 Query: 298 DPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST----------THTIERLA 345 DPPR+GL + M++ A HI Y+SCNP S DL T+ + L Sbjct: 459 DPPRAGLQKKLIKMLRRLAPRHICYVSCNPHSQAPDLEAFCAKVKPEMGEVGTYRVRYLQ 518 Query: 346 LFDQFPYTRHME 357 D P+T H+E Sbjct: 519 PVDMLPHTPHIE 530 >gi|304321306|ref|YP_003854949.1| putative rna methyltransferase protein [Parvularcula bermudensis HTCC2503] gi|303300208|gb|ADM09807.1| putative rna methyltransferase protein [Parvularcula bermudensis HTCC2503] Length = 438 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 45/152 (29%), Positives = 71/152 (46%), Gaps = 15/152 (9%) Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274 +L+ G G FSL LA RVLA E A +V A R A S+ +R Sbjct: 296 DLFAGIGTFSLPLAATGARVLAAEGAPDAVSALRTGAA------------SAGLAVDVLR 343 Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLS 333 R+ + + D+ + F+ + DPPR+G + + P + +SC P +L RDL Sbjct: 344 RDLFTDPIAAEDLAA--FEAVVFDPPRAGAAAQAAAIAEAGVPLVAAVSCQPGTLARDLR 401 Query: 334 ILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 S + + L + DQF ++ H+E +L R+ Sbjct: 402 AFSAAYDLTALTVVDQFLWSGHIEVVAILRRR 433 >gi|161524629|ref|YP_001579641.1| 23S rRNA 5-methyluridine methyltransferase [Burkholderia multivorans ATCC 17616] gi|160342058|gb|ABX15144.1| RNA methyltransferase, TrmA family [Burkholderia multivorans ATCC 17616] Length = 487 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 57/190 (30%), Positives = 82/190 (43%), Gaps = 24/190 (12%) Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 FTQ N IN ++ L + D +L+L+CG GNF+L LAR V+ +E ++ Sbjct: 309 FTQVNHQINRVLVGRALRLLAPARDDRVLDLFCGIGNFTLPLARLAREVVGIEGSETLTT 368 Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY-RFKTIFVDPPRSG- 303 A N N V+ T A R E + DI + F +DPPR G Sbjct: 369 RALANARENGVDG---------HTTFACRNLFE---VTADDIRALGAFDKFLIDPPREGA 416 Query: 304 -------LDDATVGMVQAYPHILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTR 354 D A G I+Y+SCNP +L RD +L + ++ + + FP T Sbjct: 417 LAVSKALADIAQSGEGPLPKRIVYVSCNPSTLARDAGLLVHEAGYRLKGAGVVNMFPNTS 476 Query: 355 HMECGVLLVR 364 H+E L R Sbjct: 477 HVESIALFER 486 >gi|16764244|ref|NP_459859.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|20455404|sp|Q8ZQJ5|RUMB_SALTY RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName: Full=23S rRNA(M-5-U747)-methyltransferase gi|16419391|gb|AAL19818.1| putative tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|312911910|dbj|BAJ35884.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321223244|gb|EFX48313.1| 23S rRNA Uracil-5- -methyltransferase rumB [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] Length = 376 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 42/155 (27%), Positives = 70/155 (45%), Gaps = 18/155 (11%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + +L+CG G F L A ++ +EIA ++ A+ + A + + + S +F A Sbjct: 237 MWDLFCGVGGFGLHCATPQMQLTGIEIAPEAIACAKQSAAELGLTRLHFQALDSTQFATA 296 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330 + + V+PPR G+ + Q P I+Y SCN ++ + Sbjct: 297 QGETPDL---------------VLVNPPRRGIGKPLCDYLAQMAPRFIIYSSCNAQTMAQ 341 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 D+ L + I+R+ LFD FP+T H E LL R Sbjct: 342 DIRHLPN-YRIQRVQLFDMFPHTAHYEVLALLRRS 375 >gi|167992134|ref|ZP_02573232.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205329669|gb|EDZ16433.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|261246138|emb|CBG23941.1| hypothetical RNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267992643|gb|ACY87528.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301157465|emb|CBW16955.1| hypothetical RNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|323129187|gb|ADX16617.1| 23S rRNA (uracil-5-)-methyltransferase rumB [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332987814|gb|AEF06797.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 376 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 42/155 (27%), Positives = 70/155 (45%), Gaps = 18/155 (11%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + +L+CG G F L A ++ +EIA ++ A+ + A + + + S +F A Sbjct: 237 MWDLFCGVGGFGLHCATPQMQLTGIEIAPEAIACAKQSAAELGLTRLHFQALDSTQFATA 296 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330 + + V+PPR G+ + Q P I+Y SCN ++ + Sbjct: 297 QGETPDL---------------VLVNPPRRGIGKPLCDYLAQMAPRFIIYSSCNAQTMAQ 341 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 D+ L + I+R+ LFD FP+T H E LL R Sbjct: 342 DIRHLPN-YRIQRVQLFDMFPHTAHYEVLALLRRS 375 >gi|167550411|ref|ZP_02344168.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205324510|gb|EDZ12349.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 375 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 42/154 (27%), Positives = 70/154 (45%), Gaps = 18/154 (11%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + +L+CG G F L A ++ +EIA ++ A+ + A + + + S +F A Sbjct: 237 MWDLFCGVGGFGLHCATPQMQLTGIEIAPEAIACAKQSAAELGLTRLHFQALDSTQFATA 296 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330 + + V+PPR G+ + Q P I+Y SCN ++ + Sbjct: 297 QGETPDL---------------VLVNPPRRGIGKPLCDYLAQMAPRFIIYSSCNAQTMAQ 341 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D+ L + I+R+ LFD FP+T H E LL R Sbjct: 342 DIRHLPN-YRIQRVQLFDMFPHTAHYEVLALLRR 374 >gi|157868729|ref|XP_001682917.1| hypothetical protein [Leishmania major strain Friedlin] gi|68126373|emb|CAJ04501.1| conserved hypothetical protein [Leishmania major strain Friedlin] Length = 602 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 45/165 (27%), Positives = 73/165 (44%), Gaps = 20/165 (12%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 LL+L G G L L++H RV+ +E+ + +V AR N N + N + + + Sbjct: 406 LLDLCSGTGTIGLTLSKHVKRVIGIELVESAVANARRNAQQNGITNAEFHCGRVEHLLPS 465 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHI---LYISCNPDSLC 329 + DI + +DPPR+G++ + ++ I +YISC +L Sbjct: 466 VISSLPAEDRGDI--------VVILDPPRAGVNSTVLKWIRGMETIRRVVYISCEQKALE 517 Query: 330 RDLSILSTTHT-------IERLALF--DQFPYTRHMECGVLLVRK 365 RD L+ T E A F D FP+T H+E +L R+ Sbjct: 518 RDCPGLTKPSTKSYRGTPFEVTAAFAVDLFPHTHHVEMVAVLTRR 562 >gi|260945193|ref|XP_002616894.1| hypothetical protein CLUG_02338 [Clavispora lusitaniae ATCC 42720] gi|238848748|gb|EEQ38212.1| hypothetical protein CLUG_02338 [Clavispora lusitaniae ATCC 42720] Length = 535 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 56/223 (25%), Positives = 100/223 (44%), Gaps = 32/223 (14%) Query: 160 ICLDR--DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWV---LAATKGIQGDLL 214 +CL R + + E++ +++ N F Q N I LE++ L+ G L+ Sbjct: 321 VCLTRRNNVITEKIG----EFLFQFEANEFFQNNRSILPTFLEFIKFHLSQIPGGYTHLI 376 Query: 215 ELYCGNGNFSLVLARHF---DRVLAVEIAKPSVEAARYNIAAN---HVNNVKIVRMSSKE 268 + YCG+G + L+ +V +EI+K S+ A++N N +N V+ V +S Sbjct: 377 DAYCGSGFLGISLSDTLPQDGKVFGIEISKKSIAYAKHNAGINGLDRINKVQFVHGNSDS 436 Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG-LDDATVGMVQAYPH-ILYISCNPD 326 + R KD + ++P R G ++ +++ P I+YISCN Sbjct: 437 MFTDEQFLRSGVNSKDC--------VLLMNPSRKGSTEEFMAQLLEFKPKAIIYISCNVF 488 Query: 327 SLCRDLSIL-------STTHTIERLALFDQFPYTRHMECGVLL 362 S RDL+ S + ++ + FD +P T+H+E +L Sbjct: 489 SQARDLATFERLQRRSSVKYKVKTITGFDFYPQTKHVETVAIL 531 >gi|294011713|ref|YP_003545173.1| TrmA family RNA methyltransferase [Sphingobium japonicum UT26S] gi|292675043|dbj|BAI96561.1| TrmA family RNA methyltransferase [Sphingobium japonicum UT26S] Length = 401 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 46/150 (30%), Positives = 73/150 (48%), Gaps = 17/150 (11%) Query: 210 QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269 QG + +L+CG G F+L L + V A E A+ V + + AAN RM++ Sbjct: 260 QGAIADLFCGLGTFALALGQGRP-VYAAEAARDLVLSLKS--AANRAQR----RMAADH- 311 Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA-YPHILYISCNPDSL 328 R+ R RF I +DPPR+G + + + + P I YISCNP S Sbjct: 312 -------RDLFRRPLTPAEIDRFAGIVIDPPRAGAQEQVMQLAASRVPVIAYISCNPASF 364 Query: 329 CRDLS-ILSTTHTIERLALFDQFPYTRHME 357 RD + +++ + +ER+ QF ++ H+E Sbjct: 365 ARDAAHLVAGGYRLERVRPVGQFRWSTHVE 394 >gi|281491671|ref|YP_003353651.1| 23S rRNA m(5)U 1939 methyltransferase [Lactococcus lactis subsp. lactis KF147] gi|281375389|gb|ADA64902.1| 23S rRNA m(5)U 1939 methyltransferase [Lactococcus lactis subsp. lactis KF147] Length = 460 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 42/154 (27%), Positives = 71/154 (46%), Gaps = 22/154 (14%) Query: 211 GDL-LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269 GD+ ++ Y G G + +A +V +E+ +VE A+ N N + N ++++ Sbjct: 314 GDVVIDAYSGIGTIGISMADRVAKVYGMEVVLAAVENAKRNAQLNELENTHYEVGAAEKI 373 Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP-----HILYISCN 324 E + IFVDPPR GLD+ G ++A I+YISCN Sbjct: 374 MPKWLSE------------GIKPDVIFVDPPRKGLDE---GFIKAAAMMNPRRIVYISCN 418 Query: 325 PDSLCRD-LSILSTTHTIERLALFDQFPYTRHME 357 P + RD + + + ++++ D FP T H+E Sbjct: 419 PATFARDVVRFEAEGYLLDKVQPVDLFPQTHHIE 452 >gi|207856315|ref|YP_002242966.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|226725412|sp|B5QYK4|RUMB_SALEP RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName: Full=23S rRNA(M-5-U747)-methyltransferase gi|206708118|emb|CAR32411.1| hypothetical RNA methyltransferase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] Length = 375 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 42/154 (27%), Positives = 70/154 (45%), Gaps = 18/154 (11%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + +L+CG G F L A ++ +EIA ++ A+ + A + + + S +F A Sbjct: 237 MWDLFCGVGGFGLHCATPQMQLTGIEIAPEAIACAKQSAAELGLTRLHFQALDSTQFATA 296 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330 + + V+PPR G+ + Q P I+Y SCN ++ + Sbjct: 297 QGETPDL---------------VLVNPPRRGIGKPLCDYLAQMAPRFIIYSSCNAQTMAQ 341 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D+ L + I+R+ LFD FP+T H E LL R Sbjct: 342 DIRHLPN-YRIQRVQLFDMFPHTAHYEVLALLRR 374 >gi|297624387|ref|YP_003705821.1| (Uracil-5)-methyltransferase [Truepera radiovictrix DSM 17093] gi|297165567|gb|ADI15278.1| (Uracil-5)-methyltransferase [Truepera radiovictrix DSM 17093] Length = 424 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 51/176 (28%), Positives = 77/176 (43%), Gaps = 21/176 (11%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 F QPN L LA G L+LY G G + LA F+RV+A+E+ + SV Sbjct: 258 TGFAQPNP-AAASRLYAELARWAGEGRFALDLYAGGGAIGMHLAASFERVVALELDRSSV 316 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 + + +++ EF Q R L + ++ I V+PPR+GL Sbjct: 317 --------VRGARDAARLGLANLEFRQG--DARRLGALPEAEL-------ICVNPPRAGL 359 Query: 305 DDATVGMVQAYP--HILYISCNPDSLCRDLSILSTTH-TIERLALFDQFPYTRHME 357 T + A +LY+SC+ + RD + L + RL FD +P T H+E Sbjct: 360 AKGTRAALSASAATRLLYVSCDVATFSRDAAQLCAAGWRLTRLEPFDFYPQTHHLE 415 >gi|168466499|ref|ZP_02700361.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|195630967|gb|EDX49553.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Salmonella enterica subsp. enterica serovar Newport str. SL317] Length = 376 Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 42/155 (27%), Positives = 70/155 (45%), Gaps = 18/155 (11%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + +L+CG G F L A ++ +EIA ++ A+ + A + + + S +F A Sbjct: 237 MWDLFCGVGGFGLHCATPQMQLTGIEIAPEAIACAKQSAAELGLTRLHFQALDSTQFATA 296 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330 + + V+PPR G+ + Q P I+Y SCN ++ + Sbjct: 297 QGETPDL---------------VLVNPPRRGIGKPLCDYLAQMAPRFIIYSSCNAQTMAQ 341 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 D+ L + I+R+ LFD FP+T H E LL R Sbjct: 342 DIRHLPN-YRIQRVQLFDMFPHTAHYEVLALLRRS 375 >gi|17545928|ref|NP_519330.1| 23S rRNA 5-methyluridine methyltransferase [Ralstonia solanacearum GMI1000] gi|20140047|sp|Q8Y035|RUMA_RALSO RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|17428223|emb|CAD14911.1| probable rna methyltransferase protein [Ralstonia solanacearum GMI1000] Length = 450 Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 57/197 (28%), Positives = 87/197 (44%), Gaps = 27/197 (13%) Query: 175 GRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDR 233 G T+ ++ + FTQ N IN ++ L GD LL+L+CG GNF+L +A Sbjct: 259 GITMPFKPTD--FTQVNHQINRVLMSRALKLLDARPGDRLLDLFCGIGNFTLPMATRGCE 316 Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293 V+ +E ++ A N N ++ + T A R E + DI RF Sbjct: 317 VMGIEGSEALTTRALANAQHNGLDG---------KTTFACRNLFEVS-ADDIAALG-RFD 365 Query: 294 TIFVDPPRSG---LDDATVGMVQAYPH--------ILYISCNPDSLCRDLSIL--STTHT 340 VDPPR G + A + Q I+Y+SCNP +L RD +L + Sbjct: 366 RWLVDPPREGALAVSKAVAELSQRGGEAAALLPGRIVYVSCNPATLARDAGLLVHEAGYR 425 Query: 341 IERLALFDQFPYTRHME 357 + + + FP+T H+E Sbjct: 426 LAGAGVVNMFPHTSHVE 442 >gi|46138691|ref|XP_391036.1| hypothetical protein FG10860.1 [Gibberella zeae PH-1] Length = 540 Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 44/162 (27%), Positives = 76/162 (46%), Gaps = 23/162 (14%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN--VKIVRMSSKEFT 270 L++ Y G+G F++ LA F + ++IA S+ A N N + K + + E Sbjct: 391 LIDAYSGSGLFTVTLASLFQHSIGIDIAADSIAYASRNATLNGMGEDRCKFIAADAGELF 450 Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSL 328 +++ +NR + + + +DPPR G D + ++ + +LY+SCN + Sbjct: 451 KSV----TYNRDETV---------VVLDPPRKGCDADFLNQLRKFGPRRVLYVSCNVHTQ 497 Query: 329 CRDLSIL------STTHTIERLALFDQFPYTRHMECGVLLVR 364 RD+ +L + IE L FD FP T H+E +L R Sbjct: 498 ARDVGVLVRGEGEGERYEIESLRGFDFFPQTGHVEGVAILNR 539 >gi|319762887|ref|YP_004126824.1| RNA methyltransferase, trma family [Alicycliphilus denitrificans BC] gi|317117448|gb|ADU99936.1| RNA methyltransferase, TrmA family [Alicycliphilus denitrificans BC] Length = 483 Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 53/215 (24%), Positives = 88/215 (40%), Gaps = 31/215 (14%) Query: 175 GRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDR 233 G T+ ++ + FTQ N IN ++ L + + +++ +CG GNF+L +A Sbjct: 273 GITMPFKPTD--FTQVNPHINRVLVTRALRLLDAREDERVIDWFCGLGNFTLPIATRSRE 330 Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293 VL VE ++ V +R N N +++ F F ++ I Sbjct: 331 VLGVEGSEALVARSRENYQKNQAQRQAGKALAATNFVA----RNLFEMTPEVLIADGAAD 386 Query: 294 TIFVDPPRSG----------LDDATVGMVQAYP------------HILYISCNPDSLCRD 331 VDPPR G + A +G +A P I+Y+SCNP +L RD Sbjct: 387 KWLVDPPREGAFALSKALADIHQARLGAAEAPPLPAGHERWQPPRRIVYVSCNPATLARD 446 Query: 332 LSIL--STTHTIERLALFDQFPYTRHMECGVLLVR 364 +L + + + FP+T H+E + R Sbjct: 447 AGLLVHQAGYRCAAAGVVNMFPHTAHVESMAVFER 481 >gi|330824966|ref|YP_004388269.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Alicycliphilus denitrificans K601] gi|329310338|gb|AEB84753.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Alicycliphilus denitrificans K601] Length = 483 Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 53/215 (24%), Positives = 88/215 (40%), Gaps = 31/215 (14%) Query: 175 GRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDR 233 G T+ ++ + FTQ N IN ++ L + + +++ +CG GNF+L +A Sbjct: 273 GITMPFKPTD--FTQVNPHINRVLVTRALRLLDAREDERVIDWFCGLGNFTLPIATRSRE 330 Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293 VL VE ++ V +R N N +++ F F ++ I Sbjct: 331 VLGVEGSEALVARSRENYQKNQAQRQAGKALAATNFVA----RNLFEMTPEVLIADGAAD 386 Query: 294 TIFVDPPRSG----------LDDATVGMVQAYP------------HILYISCNPDSLCRD 331 VDPPR G + A +G +A P I+Y+SCNP +L RD Sbjct: 387 KWLVDPPREGAFALSKALADIHQARLGAAEAPPLPAGHERWQPPRRIVYVSCNPATLARD 446 Query: 332 LSIL--STTHTIERLALFDQFPYTRHMECGVLLVR 364 +L + + + FP+T H+E + R Sbjct: 447 AGLLVHQAGYRCAAAGVVNMFPHTAHVESMAVFER 481 >gi|260906561|ref|ZP_05914883.1| putative tRNA (Uracil-5-)-methyltransferase [Brevibacterium linens BL2] Length = 426 Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 47/156 (30%), Positives = 76/156 (48%), Gaps = 25/156 (16%) Query: 213 LLELYCGNGNFSLVLARHFD-RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271 + +LYCG G + A R+ VE AK ++E A+ N N Sbjct: 292 ITDLYCGVGLLGISAATATGARLYGVEGAKSAIENAKVNAKGLTAN------------FD 339 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA-TVGMVQAYPH-ILYISCNPDSLC 329 A R +R ++ + D+ I +DPPR+G A T ++++ I+Y+SC+ +L Sbjct: 340 ASRADRA--KIPNSDV-------IILDPPRAGAGKAVTRALIESSATTIVYVSCDAATLA 390 Query: 330 RDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364 RDL++L + I+ L+ FD FP T H+E +L R Sbjct: 391 RDLAVLVNGGFAIDSLSGFDLFPLTSHVETVTVLRR 426 >gi|5738225|gb|AAD50302.1| RNA methyltransferase homolog [Vibrio cholerae] Length = 110 Score = 60.5 bits (145), Expect = 4e-07, Method: Composition-based stats. Identities = 40/124 (32%), Positives = 62/124 (50%), Gaps = 20/124 (16%) Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY---RFKTIFVDPPRSG 303 A +N N +NNV F QA N +D+ S+ +F + +DP R+G Sbjct: 1 ATHNAKLNQINNVA--------FYQA-------NLEQDMTSASWAQQKFAKVLLDPARAG 45 Query: 304 LDDATVGM-VQAYPHILYISCNPDSLCRD-LSILSTTHTIERLALFDQFPYTRHMECGVL 361 + + V ++Y+SCNP +L RD S+LS +E+L + D FP+T H+E L Sbjct: 46 AEGIVDQLSVLGAKRVVYVSCNPATLARDSQSLLSQGFRLEKLGMLDMFPHTSHLESMAL 105 Query: 362 LVRK 365 V+K Sbjct: 106 FVKK 109 >gi|114799366|ref|YP_761460.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA [Hyphomonas neptunium ATCC 15444] gi|114739540|gb|ABI77665.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA [Hyphomonas neptunium ATCC 15444] Length = 416 Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 59/219 (26%), Positives = 101/219 (46%), Gaps = 23/219 (10%) Query: 154 RANKTKICLDRDYV----DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGI 209 RA ++ L+ + V RL + +L+ F Q +A + VL G Sbjct: 215 RAGFARVSLEGEDVLTERPPRLPIGAASLL--PPPGGFLQASAEAETEIARLVLGHLGGA 272 Query: 210 QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269 + +L+ G G F+L LA V A E +P++EA AAN +K V ++ Sbjct: 273 K-HAADLFSGCGTFALRLAERIP-VFAAESGRPAIEA--LRAAANAAPGLKPVTADVRDL 328 Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA-YPHILYISCNPDSL 328 + N L +++ RF + +DPPR+G + ++ P + Y+SC+P +L Sbjct: 329 FR--------NPLAAVEL--ARFDGLVLDPPRAGASAQAAEIARSTVPRVAYVSCDPATL 378 Query: 329 CRDL-SILSTTHTIERLALFDQFPYTRHMECGVLLVRKP 366 RDL +++ + + R DQF ++ H+E V L+ KP Sbjct: 379 ARDLRALVDGGYRLLRAHPVDQFLWSAHVEA-VALLEKP 416 >gi|227496018|ref|ZP_03926329.1| conserved hypothetical protein [Actinomyces urogenitalis DSM 15434] gi|226834411|gb|EEH66794.1| conserved hypothetical protein [Actinomyces urogenitalis DSM 15434] Length = 323 Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 51/195 (26%), Positives = 86/195 (44%), Gaps = 30/195 (15%) Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVL 235 R + +E S ++P A + L+ +LELY G G F+L LA V Sbjct: 152 RGALTGTLEGSSSRPGA-VRAEGLK------------VLELYSGAGLFTLPLASLGGEVR 198 Query: 236 AVEIAKPSVEAARYNIAA---NHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292 ++E ++ +V AR N+ A H+ ++ S E R F D Sbjct: 199 SLEGSEQAVRDARRNLHAFPGAHLFAGRVTPASVAELG------RGFGEAGD-----QAA 247 Query: 293 KTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDL-SILSTTHTIERLALFDQ 349 + +DPPR G A V V ++ ++C+P + RDL ++L+ +++ + D Sbjct: 248 DVVVLDPPRKGAGRAVVEAVADLGPRRVVLVACDPAAAARDLGALLARGYSLASMCALDM 307 Query: 350 FPYTRHMECGVLLVR 364 FP+T H E ++L R Sbjct: 308 FPHTHHFETLIVLDR 322 >gi|308234194|ref|ZP_07664931.1| 23S rRNA m(5)U-1939 methyltransferase [Atopobium vaginae DSM 15829] gi|328944452|ref|ZP_08241914.1| hypothetical protein HMPREF0091_11139 [Atopobium vaginae DSM 15829] gi|327491036|gb|EGF22813.1| hypothetical protein HMPREF0091_11139 [Atopobium vaginae DSM 15829] Length = 609 Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 46/161 (28%), Positives = 78/161 (48%), Gaps = 19/161 (11%) Query: 213 LLELYCGNGNFSLVLARHFDR--VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270 +++ YCG G + +A V+ + + S+E A+ N NH+ + S ++ T Sbjct: 367 IMDAYCGCGTIGICVASQIKNAVVIGFDQVEDSIERAKKNRRLNHLKTRCV--YSCEDAT 424 Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH-----ILYISCNP 325 + M+ +F + RF+ I +DPPR+G +T ++A I YISCNP Sbjct: 425 RFMQ---DFAYASN---GVSRFEAIIMDPPRAG---STPEFIKAAASLRPKCIAYISCNP 475 Query: 326 DSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 + RDL+ +++E + D FP+T H E LL R+ Sbjct: 476 QTQVRDLAEFYRCGYSVESITPVDMFPHTPHTESVCLLTRQ 516 >gi|299067260|emb|CBJ38457.1| 23S rRNA (Uracil-5-)-methyltransferase rumA (23S rRNA(M-5-U1939)-methyltransferase) [Ralstonia solanacearum CMR15] Length = 482 Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 57/197 (28%), Positives = 87/197 (44%), Gaps = 27/197 (13%) Query: 175 GRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDR 233 G T+ ++ + FTQ N IN ++ L GD LL+L+CG GNF+L +A Sbjct: 291 GITMPFKPTD--FTQVNHQINRVLMSRALKLLDARPGDRLLDLFCGIGNFTLPMATRGCE 348 Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293 V+ +E ++ A N N ++ + T A R E + DI RF Sbjct: 349 VMGIEGSETLTTRALANAQHNGLD---------AKVTFACRNLFEVS-ADDIAALG-RFD 397 Query: 294 TIFVDPPRSG---LDDATVGMVQAYPH--------ILYISCNPDSLCRDLSIL--STTHT 340 VDPPR G + A + Q I+Y+SCNP +L RD +L + Sbjct: 398 RWLVDPPREGALAVSKAVAELSQRGGEAAALLPGRIVYVSCNPATLARDAGLLVHEAGYR 457 Query: 341 IERLALFDQFPYTRHME 357 + + + FP+T H+E Sbjct: 458 LAGAGVVNMFPHTSHVE 474 >gi|34222389|ref|NP_892029.2| tRNA (uracil-5-)-methyltransferase homolog A [Homo sapiens] gi|51173878|ref|NP_073564.3| tRNA (uracil-5-)-methyltransferase homolog A [Homo sapiens] gi|51316479|sp|Q8IZ69|TRM2A_HUMAN RecName: Full=tRNA (uracil-5-)-methyltransferase homolog A; AltName: Full=HpaII tiny fragments locus 9c protein gi|33869861|gb|AAH17184.2| TRM2 tRNA methyltransferase 2 homolog A (S. cerevisiae) [Homo sapiens] gi|39644624|gb|AAH13352.2| TRM2 tRNA methyltransferase 2 homolog A (S. cerevisiae) [Homo sapiens] gi|47678239|emb|CAG30240.1| Em:AC006547.2 [Homo sapiens] gi|80477429|gb|AAI08252.1| TRM2 tRNA methyltransferase 2 homolog A (S. cerevisiae) [Homo sapiens] gi|109451268|emb|CAK54495.1| Em:AC006547.C22.2 [synthetic construct] gi|109451846|emb|CAK54794.1| Em:AC006547.C22.2 [synthetic construct] gi|119623400|gb|EAX02995.1| HpaII tiny fragments locus 9C, isoform CRA_a [Homo sapiens] gi|261857608|dbj|BAI45326.1| TRM2 tRNA methyltransferase 2 homolog A [synthetic construct] Length = 625 Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 48/170 (28%), Positives = 76/170 (44%), Gaps = 25/170 (14%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +L++ CG G L LAR RV+ VE+ +VE AR N N ++NV+ +++ Sbjct: 436 VLDVCCGTGTIGLALARKVKRVIGVELCPEAVEDARVNAQDNELSNVEFHCGRAEDLVPT 495 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH---ILYISCNPDS-- 327 + +RL + +DPPR+GL + ++ + +LY+SCNP + Sbjct: 496 L-----VSRLASQHL------VAILDPPRAGLHSKVILAIRRAKNLRRLLYVSCNPRAAM 544 Query: 328 -----LCRDLS--ILSTTHTIERLALFDQFPYTRHMECGVLL--VRKPSG 368 LCR S + + D FP T H E +L V P+G Sbjct: 545 GNFVDLCRAPSNRVKGIPFRPVKAVAVDLFPQTPHCEMLILFERVEHPNG 594 >gi|120403465|ref|YP_953294.1| (Uracil-5)-methyltransferase [Mycobacterium vanbaalenii PYR-1] gi|119956283|gb|ABM13288.1| (Uracil-5)-methyltransferase [Mycobacterium vanbaalenii PYR-1] Length = 395 Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 46/154 (29%), Positives = 67/154 (43%), Gaps = 19/154 (12%) Query: 215 ELYCGNGNFSLVLARHFDRVLAVE-IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273 +LY G G F+ LAR AV + + A + NV +V T ++ Sbjct: 257 DLYGGAGVFAAALARGVGDTGAVTTVDTSRGASRAARAALADLGNVSVV-------TDSV 309 Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRD 331 RR R R +DPPR+G V ++ A P I++I C S RD Sbjct: 310 RRALTGQRT--------RADVAVLDPPRTGAGREVVDLLAAAEVPRIIHIGCEAASFARD 361 Query: 332 LSI-LSTTHTIERLALFDQFPYTRHMECGVLLVR 364 + + L + +E L +FD FP T H+EC +L R Sbjct: 362 VGLYLGHGYAVEELRVFDSFPLTHHVECVAVLTR 395 >gi|289706908|ref|ZP_06503245.1| TRAM domain protein [Micrococcus luteus SK58] gi|289556343|gb|EFD49697.1| TRAM domain protein [Micrococcus luteus SK58] Length = 490 Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 52/196 (26%), Positives = 92/196 (46%), Gaps = 10/196 (5%) Query: 175 GRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFSLVLARHFD- 232 G T +R + F Q + +++ VL + G ++ +LY G G FS LA Sbjct: 284 GGTKRFRVTGDGFWQVHQHAPATLVDAVLEDARVEPGQVVADLYGGAGLFSAYLADAVGP 343 Query: 233 --RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY 290 RV +VE ++ + + AR N+ + ++ + + + + E + D + Sbjct: 344 EGRVYSVEASRQASKDARRNL--HDQPQASVLNGPTDKVLGSWLKYPE-RPVADGGLGGA 400 Query: 291 RFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSIL-STTHTIERLALF 347 T+ +DPPR+G + + A I+Y+SC+P S RDL+ L + +ER +F Sbjct: 401 ALDTVVLDPPRAGAGRRAIERILALEPGRIVYVSCDPASFARDLAWLRDGGYEVERARVF 460 Query: 348 DQFPYTRHMECGVLLV 363 D +P T H+E +LV Sbjct: 461 DLYPDTHHLESVTVLV 476 >gi|229820435|ref|YP_002881961.1| (Uracil-5)-methyltransferase [Beutenbergia cavernae DSM 12333] gi|229566348|gb|ACQ80199.1| (Uracil-5)-methyltransferase [Beutenbergia cavernae DSM 12333] Length = 405 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 70/252 (27%), Positives = 111/252 (44%), Gaps = 37/252 (14%) Query: 135 AIRLRDALHAR---KYQIQLIGRANKTKICL--------DRDYVDERLTVA-GRTLIYRQ 182 A+R DAL R ++ L+ + + L DR V ER+ + GR YR Sbjct: 170 ALREHDALRRRWEPGSRLDLVAGSEGAPLVLLDGAPVRGDRRTVRERVELGDGRAWRYRV 229 Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFD---RVLAVE 238 + F Q + ++E VL A + G+ +L+LY G G F+L LA +V AVE Sbjct: 230 AGSGFWQVHRAAPTVLVEAVLDAAQPQAGERVLDLYSGAGLFTLPLADAVGADGQVAAVE 289 Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298 +V AR N+ + V + S + A D+ + +D Sbjct: 290 GDPAAVRDARRNL--HDRGQVDLHGGSVADVLDAG-----VGAGADL---------VILD 333 Query: 299 PPRSGLD-DATVGMVQAYPH-ILYISCNPDSLCRDLSILS-TTHTIERLALFDQFPYTRH 355 PPR+G D + P I+Y++C+P +L RDL + + + + L D FP+T H Sbjct: 334 PPRAGAGRDVVEAVTGRRPRRIVYVACDPAALARDLRLAADAGYALTSLDAVDLFPHTHH 393 Query: 356 MECGVLLVRKPS 367 +E L V +P+ Sbjct: 394 IEA--LAVLEPA 403 >gi|325981486|ref|YP_004293888.1| (Uracil-5)-methyltransferase [Nitrosomonas sp. AL212] gi|325531005|gb|ADZ25726.1| (Uracil-5)-methyltransferase [Nitrosomonas sp. AL212] Length = 388 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 45/179 (25%), Positives = 80/179 (44%), Gaps = 24/179 (13%) Query: 187 FTQPNAGINVHMLEWVLA--ATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 F Q N N M W+ + G ++EL+CG+GN + ++A Sbjct: 213 FKQGNTSQNAWMQSWLKEKLVSTSCSGKVVELFCGSGNLTQIIA---------------- 256 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE-FNRL--KDIDIHSYRFKTIFVDPPR 301 E+ +I A ++ I ++ ++ F + + ++ F+ L K + K + +DPPR Sbjct: 257 ESNCTSIIALESDDNAIQQLKTRNFDKVIPQKYNLFDPLVWKKLQQKINDAKILVLDPPR 316 Query: 302 SGLD--DATVGMVQAYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHME 357 +GL + + I+Y SCNP++ RD I+ + L D FP+T H+E Sbjct: 317 AGLKKHNGFFNGFRTLKTIIYFSCNPETFARDAWFFYQNGFLIDEIQLIDLFPHTHHVE 375 >gi|114685137|ref|XP_001166807.1| PREDICTED: HpaII tiny fragments locus 9C isoform 1 [Pan troglodytes] gi|114685139|ref|XP_001166936.1| PREDICTED: HpaII tiny fragments locus 9C isoform 2 [Pan troglodytes] gi|114685141|ref|XP_001167055.1| PREDICTED: tRNA (uracil-5-)-methyltransferase homolog A isoform 5 [Pan troglodytes] Length = 625 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 48/170 (28%), Positives = 76/170 (44%), Gaps = 25/170 (14%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +L++ CG G L LAR RV+ VE+ +VE AR N N ++NV+ +++ Sbjct: 436 VLDVCCGTGTIGLALARKVKRVIGVELCPEAVEDARVNAQDNELSNVEFHCGRAEDLVPT 495 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH---ILYISCNPDS-- 327 + +RL + +DPPR+GL + ++ + +LY+SCNP + Sbjct: 496 L-----VSRLASQHL------VAILDPPRAGLHSKVILAIRRAKNLRRLLYVSCNPRAAM 544 Query: 328 -----LCRDLS--ILSTTHTIERLALFDQFPYTRHMECGVLL--VRKPSG 368 LCR S + + D FP T H E +L V P+G Sbjct: 545 GNFVDLCRAPSNRVKGIPFRPVKAVAVDLFPQTPHCEMLILFERVEHPNG 594 >gi|197265862|ref|ZP_03165936.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197244117|gb|EDY26737.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] Length = 375 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 41/154 (26%), Positives = 69/154 (44%), Gaps = 18/154 (11%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + +L+CG G F L A ++ +EIA ++ A+ + + + + S +F A Sbjct: 237 MWDLFCGVGGFGLHCATPQMQLTGIEIAPEAIACAKQSATELGLTRLHFQALDSTQFATA 296 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330 + + V+PPR G+ + Q P I+Y SCN ++ + Sbjct: 297 QGETPDL---------------VLVNPPRRGIGKPLCDYLAQMAPRFIIYSSCNAQTMAQ 341 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D+ L + I+R+ LFD FP+T H E LL R Sbjct: 342 DIRHLPN-YRIQRVQLFDMFPHTAHYEVLTLLCR 374 >gi|153007894|ref|YP_001369109.1| (Uracil-5)-methyltransferase [Ochrobactrum anthropi ATCC 49188] gi|151559782|gb|ABS13280.1| (Uracil-5)-methyltransferase [Ochrobactrum anthropi ATCC 49188] Length = 413 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 48/183 (26%), Positives = 85/183 (46%), Gaps = 16/183 (8%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 F Q A M+ VL+ G + +L+CG G F+L +A V AVE ++ Sbjct: 245 GCFLQATADAEEAMVSLVLSHL-GKAKRVADLFCGVGTFALRIAEK-SAVHAVE--NDAL 300 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 A + HV +K V + ++ + +E + + DPPR+G Sbjct: 301 ALAALDRGVRHVQGLKPVSVERRDLFRRPLMPKEL----------LPYNAVVFDPPRAGA 350 Query: 305 DDATVGMVQA-YPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLL 362 ++ + + ++ ++ +SCNP +L RDL+IL + + R+ DQF ++ H+E L Sbjct: 351 EEQALELAKSKVEKVVAVSCNPVTLARDLAILVKGGYRVTRVTPIDQFLWSPHVEAVATL 410 Query: 363 VRK 365 V+K Sbjct: 411 VKK 413 >gi|83769956|dbj|BAE60091.1| unnamed protein product [Aspergillus oryzae] Length = 577 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 53/198 (26%), Positives = 88/198 (44%), Gaps = 31/198 (15%) Query: 185 NSFTQPNAGINVHMLEWV--LAATKGIQGD------LLELYCGNGNFSLVLARHFDRVLA 236 +F Q N I E++ LA K Q D LL+ Y G+G F++ L+ F L Sbjct: 391 GAFFQNNNSILSGFTEYIRQLALPKHTQQDSKPIKYLLDAYSGSGLFTITLSPLFKSSLG 450 Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296 V+++ S+ +AR N AN + N + KD+ + + Sbjct: 451 VDVSGDSIVSARENARANSLPNTGFAAADAATL------------FKDVPYPPDQ-TLLV 497 Query: 297 VDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSIL-------STTHTIERLALF 347 +DPPR G D + + + ++Y+SCN + RD++++ + IE + F Sbjct: 498 IDPPRKGCSDDFLRQLLTFGPRRVVYVSCNVHTQARDVAVMVQGDKEKNIRFEIESIRGF 557 Query: 348 DQFPYTRHMECGVLLVRK 365 D FP T H+E GV ++ K Sbjct: 558 DFFPQTGHVE-GVAILNK 574 >gi|317125054|ref|YP_004099166.1| 23S rRNA m(5)U-1939 methyltransferase [Intrasporangium calvum DSM 43043] gi|315589142|gb|ADU48439.1| 23S rRNA m(5)U-1939 methyltransferase [Intrasporangium calvum DSM 43043] Length = 418 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 63/254 (24%), Positives = 106/254 (41%), Gaps = 24/254 (9%) Query: 121 LIYHRLLDDAWREC-AIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179 ++ +LD W C A+ + DA H + + + A V ER+ Sbjct: 181 VVGSGVLDTDWSGCTAVDVVDAAHPEEPVLVPLPLAKGLDA--GGGLVGERVVDGEWAGE 238 Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDR---VL 235 Y F Q + G L V++ + GD +++LY G+G F++ L VL Sbjct: 239 YVVAARGFWQVHPGAASTFLSRVVSLLEPAPGDRVIDLYAGSGLFTMRLGELVAPDGFVL 298 Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295 VE + +V N H+ NV+ + R ERE L I + + Sbjct: 299 GVEGDRAAVANGALNT--EHLENVEW---------RTNRVERELASLVAQGISA---DLV 344 Query: 296 FVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILST-THTIERLALFDQFPY 352 +DPPR+G A + + A ++Y++C+P +L RD+ + + + +D FP Sbjct: 345 VLDPPRTGAGPAVMADLAALQPRRVVYVACDPAALARDVQAAGAHGYRLAHVEAWDAFPM 404 Query: 353 TRHMECGVLLVRKP 366 T H+EC +L P Sbjct: 405 THHVECIAVLEPGP 418 >gi|313139861|ref|ZP_07802054.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB 41171] gi|313132371|gb|EFR49988.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB 41171] Length = 437 Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 56/207 (27%), Positives = 91/207 (43%), Gaps = 23/207 (11%) Query: 169 ERLTVAGRTLIYRQIENSFTQPNAGINV----HMLEWVLAATKGIQGDLL-ELYCGNGNF 223 E +TV GR Y N F Q + V H+++ A G+ + +LY G G F Sbjct: 240 ETVTVNGRDFQYMVDANGFWQVHRQAPVMLAGHVIDLANKALDGMTSACIWDLYSGAGLF 299 Query: 224 SLVLARHF---DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 +L LA R+L+VE K +V+ A+ N+ A ++ +V R T Sbjct: 300 TLPLATMIAERTRMLSVEGGKTAVKNAQRNLRALNLPDVD-ARCGDVSAT---------- 348 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSIL-ST 337 L + H R + +DPPR+G + ++Y++C+P SL RD + L S Sbjct: 349 -LAHVPAHLSRPDLVVLDPPRAGAHAKVCRQIAQAGAKDVIYVACDPTSLARDTATLISL 407 Query: 338 THTIERLALFDQFPYTRHMECGVLLVR 364 + + + +D +P T H+E R Sbjct: 408 GYRLSDIRAYDIYPMTHHVETVAWFTR 434 >gi|329667719|gb|AEB93667.1| RNA methyltransferase, TrmA family [Lactobacillus johnsonii DPC 6026] Length = 459 Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 38/153 (24%), Positives = 69/153 (45%), Gaps = 14/153 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L++ Y G G ++ + V+ +E +V A+ N NHV N + ++ + ++ Sbjct: 314 LIDAYAGVGTLGILASDQVRLVIGIESIPEAVIDAQENCRLNHVRNAEYIQGNVEKL--- 370 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330 L ++ + VDPPR+GL + +++ P +Y+SCNP +L + Sbjct: 371 ---------LPELKNQGVPINALIVDPPRTGLSKKLIKTLLEVKPETFVYVSCNPATLAK 421 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363 DL +LS + + + D P T E LV Sbjct: 422 DLVLLSDAYDVRVIQPVDMMPQTPRWEGVTKLV 454 >gi|303232532|ref|ZP_07319218.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA [Atopobium vaginae PB189-T1-4] gi|302481319|gb|EFL44393.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA [Atopobium vaginae PB189-T1-4] Length = 539 Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 52/176 (29%), Positives = 80/176 (45%), Gaps = 15/176 (8%) Query: 204 AATKGIQGDL--LELYCGNGNFSLVLARHFDRVLAVEI--AKPSVEAARYNIAANHVNNV 259 A + QG L ++ YCG G + LA + + V I + S+E AR N NH+ + Sbjct: 362 AKNQHTQGMLRVMDAYCGCGTIDICLASQIEDAVVVGIDQVEDSIERARRNRKLNHLRSR 421 Query: 260 KIVRMSS-----KEFTQAMRREREFNRLKDIDIHSY---RFKTIFVDPPRSG-LDDATVG 310 + + + F A E + + + + RF I +DPPR+G + +G Sbjct: 422 AVYSLDDATHFMQNFVYASSVTSELSHEDEAAMSNGGRPRFDAIIMDPPRAGSTPEFILG 481 Query: 311 MVQAYPH-ILYISCNPDSLCRDLSILSTTHTIER-LALFDQFPYTRHMECGVLLVR 364 P I+YISCNP + RDL + R + D FP+T H+E VL+ R Sbjct: 482 ACALNPTCIVYISCNPVTQERDLHEFYAHGYVPRSITPVDMFPHTPHVESVVLMSR 537 >gi|325526959|gb|EGD04415.1| 23S rRNA m(5)U1939 methyltransferase [Burkholderia sp. TJI49] Length = 454 Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 57/190 (30%), Positives = 82/190 (43%), Gaps = 24/190 (12%) Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 FTQ N IN ++ L + D +L+L+CG GNF+L LAR V+ +E ++ Sbjct: 276 FTQVNHQINRVLVGRALRLLAPARDDRVLDLFCGIGNFTLPLARLAREVMGIEGSEALTT 335 Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY-RFKTIFVDPPRSG- 303 A N N V+ T A R F D DI + F +DPPR G Sbjct: 336 RALANARENGVDG---------HTTFACR--NLFEVTAD-DIRALGAFDKFLIDPPREGA 383 Query: 304 -------LDDATVGMVQAYPHILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTR 354 + A G I+Y+SCNP +L RD +L + ++ + + FP T Sbjct: 384 LAVSKALAEIAQSGEGPLPKRIVYVSCNPSTLARDAGLLVHEAGYRLKGAGVVNMFPNTS 443 Query: 355 HMECGVLLVR 364 H+E L R Sbjct: 444 HVESIALFER 453 >gi|167836388|ref|ZP_02463271.1| 23S rRNA 5-methyluridine methyltransferase [Burkholderia thailandensis MSMB43] Length = 467 Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 54/191 (28%), Positives = 82/191 (42%), Gaps = 24/191 (12%) Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLAR--HFDRVLAVEIAKPS 243 FTQ N IN ++ L +GD +L+L+CG GNF+L LAR V+ +E ++ Sbjct: 287 FTQVNHQINRVLVGRALRLLAPERGDRVLDLFCGIGNFTLPLARLAREGEVVGIEGSETL 346 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 A N N V+ F E + L+ + F +DPPR G Sbjct: 347 TSRALANAKENGVDG-------HTSFACRNLFEVTADDLRALGA----FDKFLIDPPREG 395 Query: 304 L--------DDATVGMVQAYPHILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYT 353 + A G I+Y+SCNP +L RD +L + ++ + + FP+T Sbjct: 396 ALAVSKALAEIAQSGEGPLPARIVYVSCNPSTLARDAGLLVHEAGYRLKGAGVVNMFPHT 455 Query: 354 RHMECGVLLVR 364 H+E L R Sbjct: 456 SHVESIALFER 466 >gi|302838263|ref|XP_002950690.1| hypothetical protein VOLCADRAFT_33590 [Volvox carteri f. nagariensis] gi|300264239|gb|EFJ48436.1| hypothetical protein VOLCADRAFT_33590 [Volvox carteri f. nagariensis] Length = 211 Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 47/178 (26%), Positives = 78/178 (43%), Gaps = 25/178 (14%) Query: 205 ATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRM 264 A G LL++ CG G + LA +V+ V+ ++E AR N A N + N + V Sbjct: 41 AAAGPSTLLLDICCGTGTIGITLAGRVSKVIGVDSVASAIEDARVNAALNGITNAEFVAG 100 Query: 265 SSKEFTQAM--RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHI---L 319 +++ + E + D+ DPPR+GL + + I + Sbjct: 101 KAEDALPGILAAHAGEGSPYGPGDV------VAVADPPRAGLHRTVLRALLGCERIRRLV 154 Query: 320 YISCNPDSLCRDLSILSTT-------------HTIERLALFDQFPYTRHMECGVLLVR 364 ++SCNPDSL +++ L ++ LA+ D FP+T H+E +LL R Sbjct: 155 FVSCNPDSLVQNVVALCCPPGRAGPGCSYTPFRPVKALAV-DLFPHTSHVEAVMLLER 211 >gi|269217993|ref|ZP_06161847.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Actinomyces sp. oral taxon 848 str. F0332] gi|269212928|gb|EEZ79268.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Actinomyces sp. oral taxon 848 str. F0332] Length = 436 Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 79/161 (49%), Gaps = 19/161 (11%) Query: 204 AATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVR 263 A+ G +L +LYCG G F+L A RV VE++ +VE+AR + AA ++ IV Sbjct: 276 ASAGGRSIELWDLYCGVGGFALHCAGPGRRVTGVELSAQAVESARASAAAAGIDADFIV- 334 Query: 264 MSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD-ATVGMVQAYPHILYIS 322 ++ RE L D+ + V+PPR G+ A+ +LY S Sbjct: 335 ------GDSLSAARE---LGTADV-------VVVNPPRRGIGGLASWIDASQIRFVLYSS 378 Query: 323 CNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363 CNP SL D++ + + + R +FD FP+T H E VLL Sbjct: 379 CNPASLAADVASMPSFRPV-RARVFDMFPHTGHTETLVLLA 418 >gi|224282703|ref|ZP_03646025.1| hypothetical protein BbifN4_02644 [Bifidobacterium bifidum NCIMB 41171] Length = 420 Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 56/207 (27%), Positives = 91/207 (43%), Gaps = 23/207 (11%) Query: 169 ERLTVAGRTLIYRQIENSFTQPNAGINV----HMLEWVLAATKGIQGDLL-ELYCGNGNF 223 E +TV GR Y N F Q + V H+++ A G+ + +LY G G F Sbjct: 223 ETVTVNGRDFQYMVDANGFWQVHRQAPVMLAGHVIDLANKALDGMTSACIWDLYSGAGLF 282 Query: 224 SLVLARHF---DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 +L LA R+L+VE K +V+ A+ N+ A ++ +V R T Sbjct: 283 TLPLATMIAERTRMLSVEGGKTAVKNAQRNLRALNLPDVD-ARCGDVSAT---------- 331 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSIL-ST 337 L + H R + +DPPR+G + ++Y++C+P SL RD + L S Sbjct: 332 -LAHVPAHLSRPDLVVLDPPRAGAHAKVCRQIAQAGAKDVIYVACDPTSLARDTATLISL 390 Query: 338 THTIERLALFDQFPYTRHMECGVLLVR 364 + + + +D +P T H+E R Sbjct: 391 GYRLSDIRAYDIYPMTHHVETVAWFTR 417 >gi|49475234|ref|YP_033275.1| RNA methyltransferase [Bartonella henselae str. Houston-1] gi|49238039|emb|CAF27246.1| RNA methyltransferase [Bartonella henselae str. Houston-1] Length = 417 Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 64/271 (23%), Positives = 120/271 (44%), Gaps = 59/271 (21%) Query: 135 AIRLRDAL---HARKYQIQLIGRANKTKI----CLDRD-------------YVDERLTVA 174 +I+L AL H +++Q+ + N + C+ RD Y RL+V Sbjct: 158 SIKLLCALVGNHTKRFQVTVTSVENGLDVAFNGCVVRDEHIRQQMIHTALAYGMTRLSVE 217 Query: 175 GRTLIYRQ------------------IENSFTQPNAGINVHMLEWVLAATKGIQGDLLEL 216 G L+ R+ ++ +F N N+ +L ++ A + +L Sbjct: 218 GEILVEREKPLVYFGDVCVEFPAGGFLQATFEAENIMGNI-ILAYLEKAKNAV-----DL 271 Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276 + G G F+L +A+ + V AVE + ++ A + AA +K + ++ + Sbjct: 272 FSGLGTFTLRMAKKMN-VHAVENNETAL--ANLDRAARFATGLKTITCERRDLFRRPLSA 328 Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA-YPHILYISCNPDSLCRDLSIL 335 +E + F+ + DPPR+G + + + P ++ ISCNP + RDLS+L Sbjct: 329 KELSC----------FECVVFDPPRAGAQEQVRELAKTTIPRVVTISCNPVTFARDLSLL 378 Query: 336 -STTHTIERLALFDQFPYTRHMECGVLLVRK 365 + +TIE++ DQF ++ H+E LL ++ Sbjct: 379 VAGGYTIEKIIPIDQFLWSPHVEIVALLSKR 409 >gi|296129556|ref|YP_003636806.1| deoxyribonuclease/rho motif-related TRAM [Cellulomonas flavigena DSM 20109] gi|296021371|gb|ADG74607.1| deoxyribonuclease/rho motif-related TRAM [Cellulomonas flavigena DSM 20109] Length = 420 Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 57/208 (27%), Positives = 92/208 (44%), Gaps = 18/208 (8%) Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGN 222 R V ER++VAG +YR F Q + + VL A + G +L+LY G G Sbjct: 224 RAAVRERVSVAGVEHVYRVAAAGFWQVHREAPALLASRVLEAVGDVAGATVLDLYSGAGL 283 Query: 223 FSLVLARHFD---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279 FS LA R++AVE + +V AR N ++ V + + + + R Sbjct: 284 FSSPLADAVGTDGRLVAVEGDERAVRDARRN-----AHDRPQVELHAGDVADVLTGRRGA 338 Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILST 337 + +DPPR+G V V A ++Y++C+P +L RD+++L+ Sbjct: 339 VAPA------AAADVVVLDPPRTGAGRRVVEAVAALRPARVVYVACDPAALARDIALLAE 392 Query: 338 THTIE-RLALFDQFPYTRHMECGVLLVR 364 + + D FP T H+E +L R Sbjct: 393 RGWSDVTVTGLDLFPMTHHVEAVAVLTR 420 >gi|92113761|ref|YP_573689.1| RNA methyltransferase [Chromohalobacter salexigens DSM 3043] gi|91796851|gb|ABE58990.1| 23S rRNA m(5)U-1939 methyltransferase [Chromohalobacter salexigens DSM 3043] Length = 475 Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 87/364 (23%), Positives = 156/364 (42%), Gaps = 57/364 (15%) Query: 27 AFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINAL 86 +P +++ E + YR RA + D + H+ F + E + ID I++ Sbjct: 133 GLTLPEIEVLAGEGLAYRRRARLGVKCDAEGTPHLGFRARGSEHL-ID--------IDSC 183 Query: 87 MIEMMATIRLEPLLRAKLFQIDY--------LTSQSDQAIVTLIYHRLL--DDA-WRECA 135 ++ RL LRA L Q++ L + ++ A V + R + D+A WR A Sbjct: 184 VVLEPVLSRLIAPLRACLVQLEAPRRVGHIELIATAEGACVVVRQLREVPGDEARWRRFA 243 Query: 136 IRLRDALHARKYQIQLIGRANKTKICLD------RDYVDERLTVAGRTLIYRQIENSFTQ 189 ++ + L R + L + + L + TL + F Q Sbjct: 244 A---------EHDVTLAWRVGREAPTLRWLHAPRGEALHVTLVLDDTTLSLGCVPGDFLQ 294 Query: 190 PNAGINVHMLEWVLA--ATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA 247 NA +N ++ LA A +G + +L+L+ G GNF+L LA + +E + VE Sbjct: 295 INADVNARLVRTALAWLAPRGEE-RVLDLFAGVGNFTLALAPRVASITGIEGSPAMVERL 353 Query: 248 RYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307 A++ + ++ +++ A + + +D + +DPPR G + Sbjct: 354 -----ADNARRAGLHQVGAQQSDLAT----QVPEVAAVDW-------VIMDPPRGGAEAL 397 Query: 308 TVGMVQA-YPHILYISCNPDSLCRDLSI-LSTTHTIERLALFDQFPYTRHMECGVLLVR- 364 + + +LY+SC+P +L RD + + + I+R AL D FP+T H+E +LL R Sbjct: 398 CRALADSPVTTLLYVSCDPAALARDAARLVQGGYRIQRAALADMFPHTAHLESMLLLTRD 457 Query: 365 KPSG 368 P G Sbjct: 458 TPRG 461 >gi|238496117|ref|XP_002379294.1| tRNA(m5U54)methyltransferase [Aspergillus flavus NRRL3357] gi|317147368|ref|XP_001822093.2| tRNA(m5U54)methyltransferase [Aspergillus oryzae RIB40] gi|220694174|gb|EED50518.1| tRNA(m5U54)methyltransferase [Aspergillus flavus NRRL3357] Length = 530 Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 53/198 (26%), Positives = 88/198 (44%), Gaps = 31/198 (15%) Query: 185 NSFTQPNAGINVHMLEWV--LAATKGIQGD------LLELYCGNGNFSLVLARHFDRVLA 236 +F Q N I E++ LA K Q D LL+ Y G+G F++ L+ F L Sbjct: 344 GAFFQNNNSILSGFTEYIRQLALPKHTQQDSKPIKYLLDAYSGSGLFTITLSPLFKSSLG 403 Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296 V+++ S+ +AR N AN + N + KD+ + + Sbjct: 404 VDVSGDSIVSARENARANSLPNTGFAAADAATL------------FKDVPYPPDQ-TLLV 450 Query: 297 VDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSIL-------STTHTIERLALF 347 +DPPR G D + + + ++Y+SCN + RD++++ + IE + F Sbjct: 451 IDPPRKGCSDDFLRQLLTFGPRRVVYVSCNVHTQARDVAVMVQGDKEKNIRFEIESIRGF 510 Query: 348 DQFPYTRHMECGVLLVRK 365 D FP T H+E GV ++ K Sbjct: 511 DFFPQTGHVE-GVAILNK 527 >gi|220912404|ref|YP_002487713.1| deoxyribonuclease/rho motif-related TRAM [Arthrobacter chlorophenolicus A6] gi|219859282|gb|ACL39624.1| deoxyribonuclease/rho motif-related TRAM [Arthrobacter chlorophenolicus A6] Length = 465 Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 50/157 (31%), Positives = 74/157 (47%), Gaps = 23/157 (14%) Query: 213 LLELYCGNGNFSLVLARHFDR---VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269 + +LY G G F+ VLA VL+VE A + AR N+ A V+IV+ Sbjct: 323 VADLYAGAGLFTAVLADAVGETGAVLSVEGAPGTSRDARKNLHA--APQVEIVQGR---- 376 Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDS 327 + + R++ N F + +DPPR+G A V + A+P I Y+SC+P S Sbjct: 377 VERVLRQKPRN-----------FDALVLDPPRAGAGKAVVRQLADAHPRAIAYVSCDPAS 425 Query: 328 LCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLV 363 RD+S + L FD +P+T H+E LL Sbjct: 426 FARDVSYFRDAGWELAGLRAFDIYPHTHHLETVALLT 462 >gi|187928146|ref|YP_001898633.1| 23S rRNA 5-methyluridine methyltransferase [Ralstonia pickettii 12J] gi|226725385|sp|B2U9U3|RUMA_RALPJ RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|187725036|gb|ACD26201.1| RNA methyltransferase, TrmA family [Ralstonia pickettii 12J] Length = 450 Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 52/198 (26%), Positives = 87/198 (43%), Gaps = 29/198 (14%) Query: 175 GRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDR 233 G T+ ++ + FTQ N IN ++ L GD LL+L+CG GNF+L +A Sbjct: 259 GITMPFKPTD--FTQVNHQINRVLMSRALKLLDAQPGDRLLDLFCGIGNFTLPMATRARE 316 Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY-RF 292 V+ +E ++ A N N ++ T+ R + D+ + +F Sbjct: 317 VMGIEGSEALTTRALANAQHNGLH------------TKTSFACRNLFEVSADDVAALGKF 364 Query: 293 KTIFVDPPRSG---LDDATVGMVQAY--------PHILYISCNPDSLCRDLSIL--STTH 339 +DPPR G + A + Q+ I+Y+SCNP +L RD +L + Sbjct: 365 DRWLIDPPREGALAVSKALAELSQSGGDAADLLPKRIIYVSCNPATLARDAGLLVHEAGY 424 Query: 340 TIERLALFDQFPYTRHME 357 + + + FP+T H+E Sbjct: 425 RLAGAGVVNMFPHTSHVE 442 >gi|118098389|ref|XP_415080.2| PREDICTED: similar to HpaII tiny fragments locus 9C [Gallus gallus] Length = 602 Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 50/217 (23%), Positives = 95/217 (43%), Gaps = 40/217 (18%) Query: 173 VAGRTLIYRQI--------ENSFTQPNAGINVHMLEWVLAATK-----GIQGDLLELYCG 219 VAG IY ++ ++F Q +N E + AA + + +L++ CG Sbjct: 345 VAGDKYIYEELLGLKFRISPHAFFQ----VNTQAAEVLYAAIREWAQLSQESTVLDICCG 400 Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279 G + LA+ +V+ +E+ + +V+ A+ N N ++N++ +++ ++ Sbjct: 401 TGTIGISLAKKVKKVIGIELCQEAVQDAKANAQINELSNIEFHCGKAEDIVPSL------ 454 Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV---QAYPHILYISCNPDS-------LC 329 I+I + + VDPPR+GL + + + ++Y+SCNP + LC Sbjct: 455 -----INILAPQNLITIVDPPRAGLHSRVILAIRRAEQLKKLIYVSCNPRAAMNNFVDLC 509 Query: 330 RDLS--ILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 R S + + D FP T+H E +L R Sbjct: 510 RAPSNRVKGAAFRPVKAMAVDLFPQTKHCELLILFER 546 >gi|68481902|ref|XP_715090.1| potential tRNA (Uracil-5-)-methyltransferase [Candida albicans SC5314] gi|46436698|gb|EAK96056.1| potential tRNA (Uracil-5-)-methyltransferase [Candida albicans SC5314] Length = 588 Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 47/202 (23%), Positives = 99/202 (49%), Gaps = 21/202 (10%) Query: 178 LIYRQIENSFTQPNAGINVHMLEWV---LAATKGIQGDLLELYCGNGNFSLVLARHFD-- 232 +++ N F Q N I +L+++ + + +L++ YCG G F + L++ F+ Sbjct: 392 FLFQYDSNCFFQNNNAILPSVLDYIRYHINQSDKTIDNLIDTYCGVGFFGIALSKSFNEN 451 Query: 233 -RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291 ++ +E+ + +++ A +N N ++ + V+ S + + E+ K I S + Sbjct: 452 TKIFGIELVEQAIKYANHNAKLNGLDPER-VQFVSGDASNIFNNEK----FKKSGI-SGK 505 Query: 292 FKTIFVDPPRSGLDDATVGMVQAY-PHIL-YISCNPDSLCRDLSIL-------STTHTIE 342 + VDP R G +++ + + + P I+ Y+SCN S RDL+ + + ++ Sbjct: 506 NSVVIVDPSRKGSNESFLQQLLDFEPEIVVYVSCNVFSQARDLATFENLQQNTNVKYKVK 565 Query: 343 RLALFDQFPYTRHMECGVLLVR 364 + FD FP T+H+E +L + Sbjct: 566 DIMGFDFFPQTKHVESIAILEK 587 >gi|194443652|ref|YP_002040122.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|226725413|sp|B4T0E3|RUMB_SALNS RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName: Full=23S rRNA(M-5-U747)-methyltransferase gi|194402315|gb|ACF62537.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Salmonella enterica subsp. enterica serovar Newport str. SL254] Length = 376 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 42/155 (27%), Positives = 70/155 (45%), Gaps = 18/155 (11%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + +L+CG G F L A ++ +EIA ++ A+ + A + + + S +F A Sbjct: 237 MWDLFCGVGGFGLHCATPQMQLTGIEIAPEAIACAKQSAAELGLTRLHFQALDSTQFAIA 296 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330 + + V+PPR G+ + Q P I+Y SCN ++ + Sbjct: 297 QGETPDL---------------VLVNPPRRGIGKPLCDYLAQMAPRFIIYSSCNAQTMAQ 341 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 D+ L + I+R+ LFD FP+T H E LL R Sbjct: 342 DIRHLPN-YRIQRVQLFDMFPHTAHYEVLTLLRRS 375 >gi|301168142|emb|CBW27730.1| putative 23S rRNA (uracil-5-)-methyltransferase [Bacteriovorax marinus SJ] Length = 376 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 54/183 (29%), Positives = 78/183 (42%), Gaps = 27/183 (14%) Query: 181 RQIENSFTQPNAGINVHMLEWVLAATK-----GIQGDLLELYCGNGNFSLVLARHFDRVL 235 R E FTQ N +N ML + + GI LL+L+ G GN S L + Sbjct: 207 RYSEGGFTQVNEEMNQKMLSHLEEQVRQYIPAGIT--LLDLFGGAGNLSYNLEEY--ETY 262 Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295 V+ P+ R + + +N K A+ + + KDI I Sbjct: 263 VVDGFPPTEMNYRPHQSFEQINLYK---------EGAIDKLQSRCSGKDI--------AI 305 Query: 296 FVDPPRSGLDDATVGMVQAYPHILY-ISCNPDSLCRDLSILSTTHTIERLALFDQFPYTR 354 +DPPRSGL + + + P ++ I+C P S RD+ + +IE L FD FP TR Sbjct: 306 ILDPPRSGLKNINELIQKLKPSFIFMINCEPSSAIRDIKSIEGDFSIENLTTFDLFPGTR 365 Query: 355 HME 357 H E Sbjct: 366 HFE 368 >gi|238913400|ref|ZP_04657237.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] Length = 376 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 42/155 (27%), Positives = 70/155 (45%), Gaps = 18/155 (11%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + +L+CG G F L A ++ +EIA ++ A+ + A + + + S +F A Sbjct: 237 MWDLFCGVGGFGLHCATPQMQLTGIEIAPEAIACAKQSAAELGLTRLHFQALDSTQFAIA 296 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330 + + V+PPR G+ + Q P I+Y SCN ++ + Sbjct: 297 QGETPDL---------------VLVNPPRRGIGKPLCDYLAQMAPRFIIYSSCNAQTMAQ 341 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 D+ L + I+R+ LFD FP+T H E LL R Sbjct: 342 DIRHLPN-YRIQRVQLFDMFPHTAHYEVLALLRRS 375 >gi|91218041|ref|ZP_01254992.1| putative RNA methyltransferase [Psychroflexus torquis ATCC 700755] gi|91183788|gb|EAS70180.1| putative RNA methyltransferase [Psychroflexus torquis ATCC 700755] Length = 184 Score = 59.7 bits (143), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 42/154 (27%), Positives = 69/154 (44%), Gaps = 17/154 (11%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + +LY G G + +A+ V+ +E ++E A+ N N + N F Sbjct: 40 VYDLYTGTGTIAQFVAKKAKHVVGIESVLEAIEDAKSNAKLNGIENTSF-------FAGD 92 Query: 273 MRR--EREFNRLKDIDIHSYRFKTIFVDPPRSGL-DDATVGMVQAYPH-ILYISCNPDSL 328 M++ EF I+ H + I DPPR G+ D ++ P I+Y+SCN + Sbjct: 93 MKKLFNSEF-----IEKHG-QPDVIITDPPRDGMHKDVIQQILNVKPKRIVYVSCNSATQ 146 Query: 329 CRDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362 RDL ++ + ++ D FP T H+E V L Sbjct: 147 ARDLELMDEFYKVDESQAVDMFPQTHHVENVVCL 180 >gi|62179445|ref|YP_215862.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161614854|ref|YP_001588819.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|224582732|ref|YP_002636530.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|75484288|sp|Q57R80|RUMB_SALCH RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName: Full=23S rRNA(M-5-U747)-methyltransferase gi|189045736|sp|A9N824|RUMB_SALPB RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName: Full=23S rRNA(M-5-U747)-methyltransferase gi|254766928|sp|C0PXN9|RUMB_SALPC RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName: Full=23S rRNA(M-5-U747)-methyltransferase gi|62127078|gb|AAX64781.1| putative tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161364218|gb|ABX67986.1| hypothetical protein SPAB_02607 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|224467259|gb|ACN45089.1| 23S rRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|322713914|gb|EFZ05485.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 376 Score = 59.7 bits (143), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 42/155 (27%), Positives = 70/155 (45%), Gaps = 18/155 (11%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + +L+CG G F L A ++ +EIA ++ A+ + A + + + S +F A Sbjct: 237 MWDLFCGVGGFGLHCATPQMQLTGIEIAPEAIACAKQSAAELGLTRLHFQALDSTQFAIA 296 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330 + + V+PPR G+ + Q P I+Y SCN ++ + Sbjct: 297 QGETPDL---------------VLVNPPRRGIGKPLCDYLAQMAPRFIIYSSCNAQTMAQ 341 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 D+ L + I+R+ LFD FP+T H E LL R Sbjct: 342 DIRHLPN-YRIQRVQLFDMFPHTAHYEVLALLRRS 375 >gi|255017119|ref|ZP_05289245.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria monocytogenes FSL F2-515] Length = 149 Score = 59.7 bits (143), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 37/126 (29%), Positives = 58/126 (46%), Gaps = 16/126 (12%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L++ YCG G A V ++I S+E A+ N N + NV +++ Sbjct: 6 LVDAYCGVGTIGQAFAGKVKEVRGMDIIPESIEDAKRNAEKNGIENVYYEVGKAEDVLPK 65 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM---VQAYPHILYISCNPDSLC 329 +E +R + VDPPRSG D + V+A ++Y+SCNP +L Sbjct: 66 WVKE------------GFRPDAVIVDPPRSGCDQGLIKSLLDVEAK-QLVYVSCNPSTLA 112 Query: 330 RDLSIL 335 RDL++L Sbjct: 113 RDLALL 118 >gi|255326644|ref|ZP_05367720.1| 23S rRNA-methyltransferase RumB [Rothia mucilaginosa ATCC 25296] gi|255295861|gb|EET75202.1| 23S rRNA-methyltransferase RumB [Rothia mucilaginosa ATCC 25296] Length = 377 Score = 59.7 bits (143), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 54/214 (25%), Positives = 90/214 (42%), Gaps = 35/214 (16%) Query: 168 DERLTVAGRTLIYRQIEN--------SFTQPNAGINVHML----EWVLAATKGIQGDLLE 215 DE + ++ R + Q+ + SF Q N + M EWV L + Sbjct: 183 DEEIILSERQTLPMQVNDLTLHLRPQSFFQTNTKVAEAMYAQGREWVREVAPR---SLWD 239 Query: 216 LYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273 LYCG G F+L A D V +EI+ +V +A+ +A + V + EF + Sbjct: 240 LYCGVGGFALHAASVMDGGSVTGIEISAEAVASAQRTVAEYGLEGVGFSAQDAPEFAVS- 298 Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRD 331 + + V+PPR G+ ++ ++ ++Y SCN +L +D Sbjct: 299 --------------SGTVPQMLVVNPPRRGIGESLCAWIEGSGIDRVVYSSCNAVTLAKD 344 Query: 332 LSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 L + + ++ L D FP+T H E VLL R+ Sbjct: 345 LERMPSYAPVQGRVL-DMFPHTDHYEVMVLLQRQ 377 >gi|329114669|ref|ZP_08243428.1| Putative RNA methyltransferase [Acetobacter pomorum DM001] gi|326696149|gb|EGE47831.1| Putative RNA methyltransferase [Acetobacter pomorum DM001] Length = 432 Score = 59.7 bits (143), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 40/147 (27%), Positives = 67/147 (45%), Gaps = 19/147 (12%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + ELY G G + LA H RV A E P++EA + + ++ Sbjct: 284 ITELYAGCGTLTFPLAEHA-RVNAYEGYAPALEALKKATSGTRISTFC------------ 330 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP-HILYISCNPDSLCRD 331 R+ N + + +DPP +G + Q P HI+Y+SCNP +L +D Sbjct: 331 ----RDLNHQPVLAKEIAASAVVVLDPPHAGAKLQMRQIAQGLPTHIIYVSCNPAALAQD 386 Query: 332 LSILSTT-HTIERLALFDQFPYTRHME 357 S+L+ +T+E + + DQF ++ +E Sbjct: 387 ASLLAKAGYTVENVTVVDQFLWSAEIE 413 >gi|91088207|ref|XP_973242.1| PREDICTED: similar to CG3808 CG3808-PA [Tribolium castaneum] gi|270011827|gb|EFA08275.1| hypothetical protein TcasGA2_TC005909 [Tribolium castaneum] Length = 586 Score = 59.7 bits (143), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 40/157 (25%), Positives = 69/157 (43%), Gaps = 24/157 (15%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +L++ CG G L A++ +VL +EI ++ A+ N N + N + ++E + Sbjct: 423 VLDVCCGTGTIGLCFAKNCKKVLGIEIVPQAIIDAKANAKLNEIENSEFFEGKAEEILGS 482 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHI---LYISCNPDSLC 329 + + + D+ VDPPR+GL V ++ I +Y+SCNP + Sbjct: 483 VC----YRAMGDV--------VAVVDPPRAGLQQKAVVQIRKINKIGQLVYVSCNPAAAL 530 Query: 330 RDL-----SILSTTHTIE----RLALFDQFPYTRHME 357 ++ T H R + D FP+TRH E Sbjct: 531 KNFIDIGRPASKTLHNEPLVPVRAVVVDMFPHTRHCE 567 >gi|15842227|ref|NP_337264.1| hypothetical protein MT2763 [Mycobacterium tuberculosis CDC1551] gi|254232795|ref|ZP_04926122.1| conserved hypothetical alanine and valine and glycine rich protein [Mycobacterium tuberculosis C] gi|13882517|gb|AAK47078.1| conserved hypothetical protein [Mycobacterium tuberculosis CDC1551] gi|124601854|gb|EAY60864.1| conserved hypothetical alanine and valine and glycine rich protein [Mycobacterium tuberculosis C] Length = 434 Score = 59.7 bits (143), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 50/193 (25%), Positives = 82/193 (42%), Gaps = 40/193 (20%) Query: 179 IYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD---RVL 235 +Y + + QP G M W +LY G G F+ VL RVL Sbjct: 275 VYSDLIADWAQPAPG----MTAW-------------DLYGGAGVFAAVLGEAVGESGRVL 317 Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295 V+ ++ + AAR + + V++V T ++RR + + Sbjct: 318 TVDTSRLASGAARAALV--DLPQVEVV-------TGSVRRV--------LAVQPAGADLA 360 Query: 296 FVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPY 352 +DPPRSG V ++ P +++I C S RD+ + + +E++ +FD FP Sbjct: 361 VLDPPRSGAGREVVDLLAGAGVPRLIHIGCEAASFARDIGLYRGHGYAVEKIKVFDAFPL 420 Query: 353 TRHMECGVLLVRK 365 T ++EC LL RK Sbjct: 421 THYVECVALLTRK 433 >gi|156034222|ref|XP_001585530.1| hypothetical protein SS1G_13414 [Sclerotinia sclerotiorum 1980] gi|154698817|gb|EDN98555.1| hypothetical protein SS1G_13414 [Sclerotinia sclerotiorum 1980 UF-70] Length = 606 Score = 59.7 bits (143), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 42/165 (25%), Positives = 79/165 (47%), Gaps = 19/165 (11%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L++ Y G+G F++ L+ F ++I+ S+ +AR N N ++ + M++ A Sbjct: 415 LIDAYSGSGLFTITLSSLFKSSTGIDISDASIISARRNAELNKLDASRCSFMAA----DA 470 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCR 330 + ++ +D + + +DPPR G D++ + + + ++Y+SCN + R Sbjct: 471 PKLFKQVTYPRDETV-------VVIDPPRKGCDESFLSQLLKFGPRRVVYVSCNVHTQAR 523 Query: 331 DLSIL------STTHTIERLALFDQFPYTRHMECGVLLVRKPSGW 369 D+ +L + IE L FD FP T H+E +L R G Sbjct: 524 DVGVLVKGGENGVRYEIESLRGFDFFPQTGHVEGVAVLNRVDEGG 568 >gi|309782327|ref|ZP_07677054.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Ralstonia sp. 5_7_47FAA] gi|308918945|gb|EFP64615.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Ralstonia sp. 5_7_47FAA] Length = 448 Score = 59.7 bits (143), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 52/198 (26%), Positives = 86/198 (43%), Gaps = 29/198 (14%) Query: 175 GRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDR 233 G T+ ++ + FTQ N IN ++ L GD LL+L+CG GNF+L +A Sbjct: 257 GITMPFKPTD--FTQVNHQINRVLMSRALKLLDAQPGDRLLDLFCGIGNFTLPMATRARE 314 Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY-RF 292 V+ +E ++ A N N ++ + +F R + DI + +F Sbjct: 315 VMGIEGSEALTTRALANAQHNGLD-------AKTKFAC-----RNLFEVTADDIAALGKF 362 Query: 293 KTIFVDPPRSGLDDATVGMVQAY-----------PHILYISCNPDSLCRDLSIL--STTH 339 VDPPR G + + + I+Y+SCNP +L RD +L + Sbjct: 363 DRWLVDPPREGALAVSKALAELSQRGGEEADLLPKRIVYVSCNPATLARDAGLLVHEAGY 422 Query: 340 TIERLALFDQFPYTRHME 357 + + + FP+T H+E Sbjct: 423 RLAGAGVVNMFPHTSHVE 440 >gi|289570865|ref|ZP_06451092.1| conserved alanine, valine and glycine rich protein [Mycobacterium tuberculosis T17] gi|289544619|gb|EFD48267.1| conserved alanine, valine and glycine rich protein [Mycobacterium tuberculosis T17] Length = 382 Score = 59.7 bits (143), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 50/193 (25%), Positives = 82/193 (42%), Gaps = 40/193 (20%) Query: 179 IYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD---RVL 235 +Y + + QP G M W +LY G G F+ VL RVL Sbjct: 223 VYSDLIADWAQPAPG----MTAW-------------DLYGGAGVFAAVLGEAVGESGRVL 265 Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295 V+ ++ + AAR + + V++V T ++RR + + Sbjct: 266 TVDTSRLASGAARAALV--DLPQVEVV-------TGSVRRV--------LAVQPAGADLA 308 Query: 296 FVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPY 352 +DPPRSG V ++ P +++I C S RD+ + + +E++ +FD FP Sbjct: 309 VLDPPRSGAGREVVDLLAGAGVPRLIHIGCEAASFARDIGLYRGHGYAVEKIKVFDAFPL 368 Query: 353 TRHMECGVLLVRK 365 T ++EC LL RK Sbjct: 369 THYVECVALLTRK 381 >gi|308373477|ref|ZP_07432477.2| conserved alanine, valine and glycine rich protein [Mycobacterium tuberculosis SUMu005] gi|308337510|gb|EFP26361.1| conserved alanine, valine and glycine rich protein [Mycobacterium tuberculosis SUMu005] Length = 397 Score = 59.7 bits (143), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 50/193 (25%), Positives = 82/193 (42%), Gaps = 40/193 (20%) Query: 179 IYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD---RVL 235 +Y + + QP G M W +LY G G F+ VL RVL Sbjct: 238 VYSDLIADWAQPAPG----MTAW-------------DLYGGAGVFAAVLGEAVGESGRVL 280 Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295 V+ ++ + AAR + + V++V T ++RR + + Sbjct: 281 TVDTSRLASGAARAALV--DLPQVEVV-------TGSVRRV--------LAVQPAGADLA 323 Query: 296 FVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPY 352 +DPPRSG V ++ P +++I C S RD+ + + +E++ +FD FP Sbjct: 324 VLDPPRSGAGREVVDLLAGAGVPRLIHIGCEAASFARDIGLYRGHGYAVEKIKVFDAFPL 383 Query: 353 TRHMECGVLLVRK 365 T ++EC LL RK Sbjct: 384 THYVECVALLTRK 396 >gi|168236826|ref|ZP_02661884.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194734709|ref|YP_002113975.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|194710211|gb|ACF89432.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197290210|gb|EDY29567.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] Length = 375 Score = 59.7 bits (143), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 41/154 (26%), Positives = 69/154 (44%), Gaps = 18/154 (11%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + +L+CG G F L A ++ +EIA ++ A+ + A + + + S +F A Sbjct: 237 MWDLFCGVGGFGLHCATPQMQLTGIEIAPEAIACAKQSAAELGLTRLHFQALDSTQFATA 296 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330 + + V+PPR G+ + Q P I+Y SCN ++ + Sbjct: 297 QGETPDL---------------VLVNPPRRGIGKPLCDYLAQMAPRFIIYSSCNAQTMAQ 341 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D+ L + I+ + LFD FP+T H E LL R Sbjct: 342 DIRHLP-NYRIQSVQLFDMFPHTAHYEVLTLLCR 374 >gi|15609826|ref|NP_217205.1| hypothetical protein Rv2689c [Mycobacterium tuberculosis H37Rv] gi|31793861|ref|NP_856354.1| hypothetical protein Mb2708c [Mycobacterium bovis AF2122/97] gi|121638564|ref|YP_978788.1| hypothetical protein BCG_2702c [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148662530|ref|YP_001284053.1| hypothetical protein MRA_2717 [Mycobacterium tuberculosis H37Ra] gi|148823879|ref|YP_001288633.1| hypothetical protein TBFG_12704 [Mycobacterium tuberculosis F11] gi|167970088|ref|ZP_02552365.1| conserved alanine valine and glycine rich protein [Mycobacterium tuberculosis H37Ra] gi|215404653|ref|ZP_03416834.1| hypothetical protein Mtub0_13403 [Mycobacterium tuberculosis 02_1987] gi|215412496|ref|ZP_03421230.1| hypothetical protein Mtub9_14130 [Mycobacterium tuberculosis 94_M4241A] gi|215428115|ref|ZP_03426034.1| hypothetical protein MtubT9_17663 [Mycobacterium tuberculosis T92] gi|215431629|ref|ZP_03429548.1| hypothetical protein MtubE_13343 [Mycobacterium tuberculosis EAS054] gi|215446943|ref|ZP_03433695.1| hypothetical protein MtubT_13777 [Mycobacterium tuberculosis T85] gi|224991056|ref|YP_002645745.1| hypothetical alanine and valine and glycine rich protein [Mycobacterium bovis BCG str. Tokyo 172] gi|253798229|ref|YP_003031230.1| hypothetical protein TBMG_01284 [Mycobacterium tuberculosis KZN 1435] gi|254365350|ref|ZP_04981395.1| conserved hypothetical alanine and valine and glycine rich protein [Mycobacterium tuberculosis str. Haarlem] gi|260187706|ref|ZP_05765180.1| hypothetical protein MtubCP_16984 [Mycobacterium tuberculosis CPHL_A] gi|260201816|ref|ZP_05769307.1| hypothetical protein MtubT4_17400 [Mycobacterium tuberculosis T46] gi|260205999|ref|ZP_05773490.1| hypothetical protein MtubK8_17045 [Mycobacterium tuberculosis K85] gi|289444231|ref|ZP_06433975.1| conserved alanine, valine and glycine rich protein [Mycobacterium tuberculosis T46] gi|289448344|ref|ZP_06438088.1| conserved alanine, valine and glycine rich protein [Mycobacterium tuberculosis CPHL_A] gi|289553525|ref|ZP_06442735.1| conserved alanine, valine and glycine rich protein [Mycobacterium tuberculosis KZN 605] gi|289575387|ref|ZP_06455614.1| conserved hypothetical protein [Mycobacterium tuberculosis K85] gi|289746490|ref|ZP_06505868.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987] gi|289751341|ref|ZP_06510719.1| conserved alanine, valine and glycine rich protein [Mycobacterium tuberculosis T92] gi|289754791|ref|ZP_06514169.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054] gi|289758817|ref|ZP_06518195.1| conserved hypothetical protein [Mycobacterium tuberculosis T85] gi|294994218|ref|ZP_06799909.1| hypothetical protein Mtub2_06818 [Mycobacterium tuberculosis 210] gi|297635297|ref|ZP_06953077.1| hypothetical protein MtubK4_14295 [Mycobacterium tuberculosis KZN 4207] gi|297732293|ref|ZP_06961411.1| hypothetical protein MtubKR_14444 [Mycobacterium tuberculosis KZN R506] gi|298526159|ref|ZP_07013568.1| conserved hypothetical alanine and valine and glycine rich protein [Mycobacterium tuberculosis 94_M4241A] gi|306776968|ref|ZP_07415305.1| conserved alanine, valine and glycine rich protein [Mycobacterium tuberculosis SUMu001] gi|306780871|ref|ZP_07419208.1| conserved alanine, valine and glycine rich protein [Mycobacterium tuberculosis SUMu002] gi|306785495|ref|ZP_07423817.1| conserved alanine, valine and glycine rich protein [Mycobacterium tuberculosis SUMu003] gi|306790092|ref|ZP_07428414.1| conserved alanine, valine and glycine rich protein [Mycobacterium tuberculosis SUMu004] gi|306798595|ref|ZP_07436897.1| conserved alanine, valine and glycine rich protein [Mycobacterium tuberculosis SUMu006] gi|306804453|ref|ZP_07441121.1| conserved alanine, valine and glycine rich protein [Mycobacterium tuberculosis SUMu008] gi|306807509|ref|ZP_07444177.1| conserved alanine, valine and glycine rich protein [Mycobacterium tuberculosis SUMu007] gi|306968748|ref|ZP_07481409.1| conserved alanine, valine and glycine rich protein [Mycobacterium tuberculosis SUMu009] gi|306973083|ref|ZP_07485744.1| conserved alanine, valine and glycine rich protein [Mycobacterium tuberculosis SUMu010] gi|307080792|ref|ZP_07489962.1| conserved alanine, valine and glycine rich protein [Mycobacterium tuberculosis SUMu011] gi|307085384|ref|ZP_07494497.1| conserved alanine, valine and glycine rich protein [Mycobacterium tuberculosis SUMu012] gi|313659626|ref|ZP_07816506.1| hypothetical protein MtubKV_14449 [Mycobacterium tuberculosis KZN V2475] gi|2181980|emb|CAB09480.1| CONSERVED HYPOTHETICAL ALANINE AND VALINE AND GLYCINE RICH PROTEIN [Mycobacterium tuberculosis H37Rv] gi|31619455|emb|CAD94893.1| CONSERVED HYPOTHETICAL ALANINE AND VALINE AND GLYCINE RICH PROTEIN [Mycobacterium bovis AF2122/97] gi|121494212|emb|CAL72690.1| Conserved hypothetical alanine and valine and glycine rich protein [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|134150863|gb|EBA42908.1| conserved hypothetical alanine and valine and glycine rich protein [Mycobacterium tuberculosis str. Haarlem] gi|148506682|gb|ABQ74491.1| conserved hypothetical alanine,valine and glycine rich protein [Mycobacterium tuberculosis H37Ra] gi|148722406|gb|ABR07031.1| conserved alanine valine and glycine rich protein [Mycobacterium tuberculosis F11] gi|224774171|dbj|BAH26977.1| hypothetical alanine and valine and glycine rich protein [Mycobacterium bovis BCG str. Tokyo 172] gi|253319732|gb|ACT24335.1| conserved alanine, valine and glycine rich protein [Mycobacterium tuberculosis KZN 1435] gi|289417150|gb|EFD14390.1| conserved alanine, valine and glycine rich protein [Mycobacterium tuberculosis T46] gi|289421302|gb|EFD18503.1| conserved alanine, valine and glycine rich protein [Mycobacterium tuberculosis CPHL_A] gi|289438157|gb|EFD20650.1| conserved alanine, valine and glycine rich protein [Mycobacterium tuberculosis KZN 605] gi|289539818|gb|EFD44396.1| conserved hypothetical protein [Mycobacterium tuberculosis K85] gi|289687018|gb|EFD54506.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987] gi|289691928|gb|EFD59357.1| conserved alanine, valine and glycine rich protein [Mycobacterium tuberculosis T92] gi|289695378|gb|EFD62807.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054] gi|289714381|gb|EFD78393.1| conserved hypothetical protein [Mycobacterium tuberculosis T85] gi|298495953|gb|EFI31247.1| conserved hypothetical alanine and valine and glycine rich protein [Mycobacterium tuberculosis 94_M4241A] gi|308214625|gb|EFO74024.1| conserved alanine, valine and glycine rich protein [Mycobacterium tuberculosis SUMu001] gi|308326272|gb|EFP15123.1| conserved alanine, valine and glycine rich protein [Mycobacterium tuberculosis SUMu002] gi|308329852|gb|EFP18703.1| conserved alanine, valine and glycine rich protein [Mycobacterium tuberculosis SUMu003] gi|308333443|gb|EFP22294.1| conserved alanine, valine and glycine rich protein [Mycobacterium tuberculosis SUMu004] gi|308341112|gb|EFP29963.1| conserved alanine, valine and glycine rich protein [Mycobacterium tuberculosis SUMu006] gi|308346104|gb|EFP34955.1| conserved alanine, valine and glycine rich protein [Mycobacterium tuberculosis SUMu007] gi|308348938|gb|EFP37789.1| conserved alanine, valine and glycine rich protein [Mycobacterium tuberculosis SUMu008] gi|308353635|gb|EFP42486.1| conserved alanine, valine and glycine rich protein [Mycobacterium tuberculosis SUMu009] gi|308357482|gb|EFP46333.1| conserved alanine, valine and glycine rich protein [Mycobacterium tuberculosis SUMu010] gi|308361436|gb|EFP50287.1| conserved alanine, valine and glycine rich protein [Mycobacterium tuberculosis SUMu011] gi|308365031|gb|EFP53882.1| conserved alanine, valine and glycine rich protein [Mycobacterium tuberculosis SUMu012] gi|323718685|gb|EGB27847.1| hypothetical protein TMMG_02698 [Mycobacterium tuberculosis CDC1551A] gi|326904303|gb|EGE51236.1| conserved alanine, valine and glycine rich protein [Mycobacterium tuberculosis W-148] gi|328458001|gb|AEB03424.1| conserved alanine, valine and glycine rich protein [Mycobacterium tuberculosis KZN 4207] Length = 405 Score = 59.7 bits (143), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 50/193 (25%), Positives = 82/193 (42%), Gaps = 40/193 (20%) Query: 179 IYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD---RVL 235 +Y + + QP G M W +LY G G F+ VL RVL Sbjct: 246 VYSDLIADWAQPAPG----MTAW-------------DLYGGAGVFAAVLGEAVGESGRVL 288 Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295 V+ ++ + AAR + + V++V T ++RR + + Sbjct: 289 TVDTSRLASGAARAALV--DLPQVEVV-------TGSVRRV--------LAVQPAGADLA 331 Query: 296 FVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPY 352 +DPPRSG V ++ P +++I C S RD+ + + +E++ +FD FP Sbjct: 332 VLDPPRSGAGREVVDLLAGAGVPRLIHIGCEAASFARDIGLYRGHGYAVEKIKVFDAFPL 391 Query: 353 TRHMECGVLLVRK 365 T ++EC LL RK Sbjct: 392 THYVECVALLTRK 404 >gi|313672911|ref|YP_004051022.1| deoxyribonuclease/rho motif-related tram [Calditerrivibrio nitroreducens DSM 19672] gi|312939667|gb|ADR18859.1| deoxyribonuclease/rho motif-related TRAM [Calditerrivibrio nitroreducens DSM 19672] Length = 388 Score = 59.7 bits (143), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 48/184 (26%), Positives = 83/184 (45%), Gaps = 26/184 (14%) Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 SF Q N + V+ KG + +LE YCG+G F++ L++ +++A++ Sbjct: 227 SFFQTNRYLFESFQRKVVEQLKGYE-TVLEFYCGSGFFTIPLSKEVRKIVAID------- 278 Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR--LKDIDIHSYRFKTIFVDPPRSG 303 N + +R+ + QA R N KDI RF + V+P R G Sbjct: 279 -----------QNDEALRLLKQ---QATGRAEVLNTDLKKDIINIKGRFDAVLVNPDRDG 324 Query: 304 LDDATVGMV-QAYPHIL-YISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVL 361 L + ++ P I+ Y+SCNP ++ RD+ + + + + DQF T H+E + Sbjct: 325 LSKGVLKVIMDKKPEIIVYVSCNPQTMSRDIKNFMNRYKMCQFTVVDQFYKTYHIESIAV 384 Query: 362 LVRK 365 L + Sbjct: 385 LTER 388 >gi|310287162|ref|YP_003938420.1| tRNA (Uracil-5-) -methyltransferase [Bifidobacterium bifidum S17] gi|309251098|gb|ADO52846.1| tRNA (Uracil-5-) -methyltransferase [Bifidobacterium bifidum S17] Length = 420 Score = 59.7 bits (143), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 56/207 (27%), Positives = 91/207 (43%), Gaps = 23/207 (11%) Query: 169 ERLTVAGRTLIYRQIENSFTQPNAGINV----HMLEWVLAATKGIQGDLL-ELYCGNGNF 223 E +TV GR Y N F Q + V H+++ A G+ + +LY G G F Sbjct: 223 ETVTVNGRDFQYMVDANGFWQVHRQAPVMLAGHVIDLANKALDGMTSACIWDLYSGAGLF 282 Query: 224 SLVLAR---HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 +L LA R+L+VE K +V+ A+ N+ A ++ +V R T Sbjct: 283 TLPLATMTAERTRMLSVEGGKTAVKNAQRNLRALNLPDVD-ARCGDVSAT---------- 331 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSIL-ST 337 L + H R + +DPPR+G + ++Y++C+P SL RD + L S Sbjct: 332 -LAHVPAHLSRPDLVVLDPPRAGAHAKVCRQIAQAGAKDVIYVACDPTSLARDTATLISL 390 Query: 338 THTIERLALFDQFPYTRHMECGVLLVR 364 + + + +D +P T H+E R Sbjct: 391 GYRLSDIRAYDIYPMTHHVETVAWFTR 417 >gi|307169861|gb|EFN62370.1| HpaII tiny fragments locus 9c protein [Camponotus floridanus] Length = 583 Score = 59.7 bits (143), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 43/165 (26%), Positives = 77/165 (46%), Gaps = 25/165 (15%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK-IVRMSSKEFTQ 271 LL++ CG G L ++H VL +EI +++ A+ N+ N + N + V + + Sbjct: 412 LLDVCCGTGTIGLCFSKHCGEVLGIEIIPDAIKDAKENVIKNGITNCEFFVGKAEDILSP 471 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL-DDATVGMVQAYP--HILYISCNPDSL 328 ++R + N T VDPPR+GL A + + +A ++YISC+P + Sbjct: 472 VIQRTTKSNI------------TAIVDPPRAGLHQKALLALRKAKKLNRLVYISCDPRAA 519 Query: 329 CRDLSILSTTHTIERLA---------LFDQFPYTRHMECGVLLVR 364 +++ L+ + + L D FP+T+H E + L R Sbjct: 520 MKNVVDLARPSSKQYLGEPFVPVKAIAVDMFPHTKHCELILCLER 564 >gi|255536105|ref|YP_003096476.1| RNA methyltransferase, TrmA family [Flavobacteriaceae bacterium 3519-10] gi|255342301|gb|ACU08414.1| RNA methyltransferase, TrmA family [Flavobacteriaceae bacterium 3519-10] Length = 469 Score = 59.7 bits (143), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 39/160 (24%), Positives = 77/160 (48%), Gaps = 15/160 (9%) Query: 209 IQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266 ++GD + +LY G G + +A++ +V+ +E + ++ AA+ + N ++N Sbjct: 320 LKGDEVVYDLYTGTGTIAQYVAKNAKKVIGIESVQEAINAAKEHAKLNGLDNCTFYCGDM 379 Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCN 324 K+ FN + + + + DPPR G+ V + A I+Y+SCN Sbjct: 380 KDI---------FN--DEFLANHPKADVLITDPPRDGMHQKVVEQILKLAPEKIVYVSCN 428 Query: 325 PDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 + RD++++ + + ++ D FP T H+E LLV+ Sbjct: 429 SATQARDMALMKDHYRLVKILPVDMFPQTHHVENIALLVK 468 >gi|163867876|ref|YP_001609080.1| RNA methyltransferase [Bartonella tribocorum CIP 105476] gi|161017527|emb|CAK01085.1| RNA methyltransferase [Bartonella tribocorum CIP 105476] Length = 417 Score = 59.7 bits (143), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 54/203 (26%), Positives = 92/203 (45%), Gaps = 29/203 (14%) Query: 170 RLTVAGRTLIYRQ-------------IENSFTQPNAGINVHMLEWVLAATKGIQGDLLEL 216 RL+V G LI R+ F Q M +L K + + L+L Sbjct: 213 RLSVDGEVLIEREKPVIYFGDVRVEFPSGGFLQATCEAENAMGNIILTHLKKAK-NALDL 271 Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276 + G G F+L +A+ + V AVE + ++E + AA +K V ++ + Sbjct: 272 FSGVGTFALRMAKKMN-VHAVENDEKALE--NLSSAARFSTGLKTVTCEKRDLFRYPLSV 328 Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA-YPHILYISCNPDSLCRDLSIL 335 +E F+++ DPPR+G + + +A ++ ISCNP + RDLS+L Sbjct: 329 KELEC----------FESVVFDPPRAGAEGQVRELAKATVSRVVAISCNPATFARDLSLL 378 Query: 336 -STTHTIERLALFDQFPYTRHME 357 + +TIE++ DQF ++ H+E Sbjct: 379 VAGGYTIEKITPIDQFLWSSHVE 401 >gi|145637263|ref|ZP_01792924.1| 23S rRNA m(5)U747-methyltransferase [Haemophilus influenzae PittHH] gi|145269515|gb|EDK09457.1| 23S rRNA m(5)U747-methyltransferase [Haemophilus influenzae PittHH] Length = 391 Score = 59.7 bits (143), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 48/156 (30%), Positives = 73/156 (46%), Gaps = 10/156 (6%) Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271 +L +L+CG G F L A+ I +E + I A N+ KI+ + F Sbjct: 241 NLWDLFCGVGGFGLHCAKALQEKWGKPIKLTGIEISSSAILAAS-NSAKILGLEHVNFQS 299 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD-DATVGMVQAYPH-ILYISCNPDSLC 329 N+ ++ + + V+PPR G+ + + + Q PH ILY SCN ++ Sbjct: 300 LNAASVIENKNEN------KPDLVIVNPPRRGIGKELSEFLNQIQPHFILYSSCNAMTMG 353 Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 +DL L T + ++ LFD FP T H E VLL RK Sbjct: 354 KDLQHL-TCYKPLKIQLFDMFPQTSHYEVLVLLERK 388 >gi|297572301|ref|YP_003698075.1| (uracil-5)-methyltransferase [Arcanobacterium haemolyticum DSM 20595] gi|296932648|gb|ADH93456.1| (Uracil-5)-methyltransferase [Arcanobacterium haemolyticum DSM 20595] Length = 395 Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 48/154 (31%), Positives = 80/154 (51%), Gaps = 21/154 (13%) Query: 215 ELYCGNGNFSLVLAR--HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +LYCG G F++ LA+ + +V+ VE+++ +VEAA +AA + V V E+ Sbjct: 259 DLYCGVGGFAMALAQLGNASKVIGVEVSEQAVEAA--RVAARDLPGVAFVAADVSEWIAE 316 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYP-HILYISCNPDSLCR 330 ER + V+PPR G+ + ++ P ++LY SCN ++L R Sbjct: 317 QGEERP--------------GAVVVNPPRRGISPELCAWLNESGPDYVLYSSCNAETLAR 362 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D++ + + +ER + D FP+T+H E VLL R Sbjct: 363 DVAAMPA-YRVERAQVVDMFPHTKHFETLVLLKR 395 >gi|300312262|ref|YP_003776354.1| 23S rRNA (Uracil-5-)-methyltransferase [Herbaspirillum seropedicae SmR1] gi|300075047|gb|ADJ64446.1| 23S rRNA (Uracil-5-)-methyltransferase protein [Herbaspirillum seropedicae SmR1] Length = 453 Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 42/158 (26%), Positives = 72/158 (45%), Gaps = 21/158 (13%) Query: 210 QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269 Q + +L+CG GNF+L +A V+ +E + E A N N V+ + Sbjct: 298 QDRVADLFCGLGNFTLPIATLAREVVGIEGSTALTERALDNAKVNGVD--AKTSFYCRNL 355 Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH--------ILYI 321 +A + +F L +F + +DPPR G + +V+ P I+Y+ Sbjct: 356 FEA--KPEDFVALG-------KFDRMLIDPPREGAMEVCKALVELPPEQQHLKPKRIVYV 406 Query: 322 SCNPDSLCRDLSILS--TTHTIERLALFDQFPYTRHME 357 SCNP +L RD +L + ++ + + FP+T H+E Sbjct: 407 SCNPATLARDAGMLVHLGGYALKYAGVVNMFPHTAHVE 444 >gi|218754425|ref|ZP_03533221.1| hypothetical protein MtubG1_13794 [Mycobacterium tuberculosis GM 1503] gi|254551745|ref|ZP_05142192.1| hypothetical protein Mtube_15022 [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|289762860|ref|ZP_06522238.1| conserved hypothetical alanine and valine and glycine rich protein [Mycobacterium tuberculosis GM 1503] gi|289710366|gb|EFD74382.1| conserved hypothetical alanine and valine and glycine rich protein [Mycobacterium tuberculosis GM 1503] Length = 405 Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 50/193 (25%), Positives = 82/193 (42%), Gaps = 40/193 (20%) Query: 179 IYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD---RVL 235 +Y + + QP G M W +LY G G F+ VL RVL Sbjct: 246 VYSDLIADWAQPAPG----MTAW-------------DLYGGAGVFAAVLGEAVGESGRVL 288 Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295 V+ ++ + AAR + + V++V T ++RR + + Sbjct: 289 TVDTSRLASGAARAALV--DLPQVEVV-------TGSVRRV--------LAVQPAGADLA 331 Query: 296 FVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPY 352 +DPPRSG V ++ P +++I C S RD+ + + +E++ +FD FP Sbjct: 332 VLDPPRSGAGREVVDLLAGAGVPRLIHIGCEAASFARDIGLYRGHGYAVEKIKVFDAFPL 391 Query: 353 TRHMECGVLLVRK 365 T ++EC LL RK Sbjct: 392 THYVECVALLTRK 404 >gi|284031682|ref|YP_003381613.1| deoxyribonuclease [Kribbella flavida DSM 17836] gi|283810975|gb|ADB32814.1| deoxyribonuclease/rho motif-related TRAM [Kribbella flavida DSM 17836] Length = 389 Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 48/182 (26%), Positives = 86/182 (47%), Gaps = 17/182 (9%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 F Q + +++ VL+ + +G+ L+LY G G F+ LA VLAVE + + Sbjct: 216 GGFWQVHPAAATTLVDAVLSGLEPREGETALDLYSGVGLFAAFLAEAGCGVLAVEGDRDA 275 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 V+ AR N+ +++ V + + + + R L+ +D+ + +DPPR+G Sbjct: 276 VKNARRNL-----HDLTGVTLEQGDVDRVLNRAVA-QGLEHVDL-------VVLDPPRTG 322 Query: 304 LDDATVGMVQAYP--HILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGV 360 V + + Y++C+P +L RDL + + + L FD F T H+EC Sbjct: 323 AGQHVVRRIAGLSPRRVAYVACDPAALARDLKTFAGLGYGVSSLRAFDLFGMTHHIECVA 382 Query: 361 LL 362 +L Sbjct: 383 VL 384 >gi|163761045|ref|ZP_02168123.1| putative 23S rRNA (uracil-5-)-methyltransferase [Hoeflea phototrophica DFL-43] gi|162281826|gb|EDQ32119.1| putative 23S rRNA (uracil-5-)-methyltransferase [Hoeflea phototrophica DFL-43] Length = 419 Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 63/214 (29%), Positives = 94/214 (43%), Gaps = 35/214 (16%) Query: 170 RLTVAGRTLIYRQ-----IENSFTQPNAGINVHMLEWVLAATKGIQGDLL---------- 214 RL+ G LI +Q P G V E A + I GDL+ Sbjct: 221 RLSFNGELLIEKQPPQLTFGTVTVNPPPGGFVQASE----AAEAIMGDLVTGHLKKAKRV 276 Query: 215 -ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273 +L+ G+G F+L LA + V AVE A + AA H +K V + ++ Sbjct: 277 VDLFSGSGTFTLRLAAN-SHVHAVE--SEEAALAALDRAARHAQGIKPVSVERRDL---F 330 Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA-YPHILYISCNPDSLCRDL 332 RR F+ LK ++ + DPPR+G + + ++ P I +SCNP +L RDL Sbjct: 331 RRPVMFSELKT-------YQGLAFDPPRAGAEAQAREIAKSMVPRIAAVSCNPVTLARDL 383 Query: 333 SIL-STTHTIERLALFDQFPYTRHMECGVLLVRK 365 IL + + I + DQF ++ H+E LL R Sbjct: 384 EILIAGGYRITSVTPIDQFLWSSHVEVVALLERS 417 >gi|84496220|ref|ZP_00995074.1| putative RNA methyltransferase [Janibacter sp. HTCC2649] gi|84382988|gb|EAP98869.1| putative RNA methyltransferase [Janibacter sp. HTCC2649] Length = 434 Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 50/188 (26%), Positives = 83/188 (44%), Gaps = 15/188 (7%) Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFD---RVLAVEIAK 241 F Q + G ++ V+ + G+ L+LY G G F+ LA+ +V+AVE Sbjct: 238 GFWQVHPGAAATFVDAVIEGLRPQPGERGLDLYAGVGVFTSALAQAVGERGQVIAVESDA 297 Query: 242 PSVEAARYNI--------AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293 +V AR N+ V++V V + + +R + Sbjct: 298 VAVAQARLNVEMTPWVQYVQGRVDHVFGVESTGRVAGSRKGGKRRAAPRRPNSAMPPTAD 357 Query: 294 TIFVDPPRSGLDDATVGMVQA-YPHIL-YISCNPDSLCRDLS-ILSTTHTIERLALFDQF 350 + +DPPR+G A + V A P L Y++C+P +L RD + ++ + + L FD F Sbjct: 358 VVVLDPPRTGAGKAVITAVVALAPRALAYVACDPAALARDTAYLMERGYALTSLRAFDAF 417 Query: 351 PYTRHMEC 358 P T H+EC Sbjct: 418 PMTHHVEC 425 >gi|77967332|gb|ABB08712.1| 23S rRNA m(5)U-1939 methyltransferase [Burkholderia sp. 383] Length = 434 Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 56/190 (29%), Positives = 81/190 (42%), Gaps = 24/190 (12%) Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 FTQ N IN ++ L + D +L+L+CG GNF+L LAR V+ +E + Sbjct: 256 FTQVNHQINRVLVGRALRLLAPSRDDRVLDLFCGIGNFTLPLARLSREVMGIEGSDTLTT 315 Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY-RFKTIFVDPPRSG- 303 A N N V+ T A R E + DI + F +DPPR G Sbjct: 316 RALANARENGVDG---------HTTFACRNLFE---VTGDDIRALGAFDKFLIDPPREGA 363 Query: 304 -------LDDATVGMVQAYPHILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTR 354 + A G I+Y+SCNP +L RD +L + ++ + + FP T Sbjct: 364 LAVSKALAEIAQSGEGPLPKRIVYVSCNPSTLARDAGLLVHEAGYRLKGAGVVNMFPNTS 423 Query: 355 HMECGVLLVR 364 H+E L R Sbjct: 424 HVESIALFER 433 >gi|301770471|ref|XP_002920643.1| PREDICTED: tRNA (uracil-5-)-methyltransferase homolog A-like [Ailuropoda melanoleuca] Length = 621 Score = 59.3 bits (142), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 48/170 (28%), Positives = 76/170 (44%), Gaps = 25/170 (14%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +L++ CG G L LA RV+ +E+ + +VE AR N N + NV+ +++ Sbjct: 432 VLDVCCGTGTIGLALAPRVKRVVGIELCQEAVEDARVNARDNELTNVEFHCGRAEDLVPT 491 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHI---LYISCNPDS-- 327 + +RL + +DPPR+GL + V+ ++ LY+SCNP + Sbjct: 492 L-----VSRLASQQL------VAILDPPRAGLHSKVILAVRRAENLRRLLYVSCNPRAAM 540 Query: 328 -----LCRDLS--ILSTTHTIERLALFDQFPYTRHMECGVLL--VRKPSG 368 LCR S + T + D FP T H E +L V P+G Sbjct: 541 GNFVDLCRAPSNRVKGTPFRPVKAVAVDLFPQTPHCEMLLLFERVEHPNG 590 >gi|116070578|ref|ZP_01467847.1| 23S rRNA methyltransferase/RumA [Synechococcus sp. BL107] gi|116065983|gb|EAU71740.1| 23S rRNA methyltransferase/RumA [Synechococcus sp. BL107] Length = 469 Score = 59.3 bits (142), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 82/172 (47%), Gaps = 21/172 (12%) Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVN 257 + +W+ +T G +++ YCG G SL LA V+ +E+ + SV+ A N N++ Sbjct: 307 LCDWL--STDMGSGTVVDAYCGIGTISLPLAAKGFDVIGLELHQGSVDQALLNAMRNNL- 363 Query: 258 NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP- 316 SK+ R R + + ++ + + +DPPR GLD + + P Sbjct: 364 --------SKQC-----RFRAGDVVDLLEAALFGADALVLDPPRRGLDARVIQTILDTPP 410 Query: 317 -HILYISCNPDSLCRDLSIL---STTHTIERLALFDQFPYTRHMECGVLLVR 364 + Y+SC+P + RDL +L + + +++ D FP T H+E LL R Sbjct: 411 QRLAYLSCDPATQARDLKMLMEPAGPYRLKKHQPIDFFPQTTHLESLALLER 462 >gi|332529099|ref|ZP_08405063.1| 23S rRNA m(5)U1939 methyltransferase [Hylemonella gracilis ATCC 19624] gi|332041322|gb|EGI77684.1| 23S rRNA m(5)U1939 methyltransferase [Hylemonella gracilis ATCC 19624] Length = 493 Score = 59.3 bits (142), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 47/161 (29%), Positives = 70/161 (43%), Gaps = 21/161 (13%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAAN-HVNNVKIVRMSSKEFTQ 271 +++ +CG GNF+L LA VL +E ++ V +R N + N ++ F Sbjct: 329 VIDWFCGLGNFTLPLATQAREVLGIEGSEALVARSRENASYNAQRRAAPWTPLAPTRF-- 386 Query: 272 AMRREREFNRLKDIDIHSYRF-KTIFVDPPRSG---LDDATVGMVQAYPH---------I 318 R L D+ SY + VDPPR G L A VQA I Sbjct: 387 ---EARNLFELAPADLLSYGVAQKWLVDPPREGAFALAKALADFVQAPESAPGYVLPRRI 443 Query: 319 LYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTRHME 357 +Y+SCNP +L RD +L + + + FP+T H+E Sbjct: 444 VYVSCNPATLARDAGLLVHQAGYRCTAAGVVNMFPHTAHVE 484 >gi|328954670|ref|YP_004372003.1| RNA methyltransferase, TrmA family [Coriobacterium glomerans PW2] gi|328454994|gb|AEB06188.1| RNA methyltransferase, TrmA family [Coriobacterium glomerans PW2] Length = 411 Score = 59.3 bits (142), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 49/163 (30%), Positives = 74/163 (45%), Gaps = 21/163 (12%) Query: 211 GDL-LELYCGNGNFSLVLARHFD------RVLAVEIAKPSVEAARYNIAANHVNNVKIVR 263 GD+ L+ YCG+G L A H RV+ VE V AR N N ++ + R Sbjct: 256 GDVVLDAYCGSGTIGLSCAAHMRASGRPIRVIGVERNPAGVRDARRNAEINGLD--AMAR 313 Query: 264 MSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD-DATVGMVQAYPH-ILYI 321 ++ T + + D+ + +DPPR+G + V+ P I+YI Sbjct: 314 FVEQDATAYIAGAADAGDRVDV---------LVLDPPRAGASPELLAAAVRLAPRRIVYI 364 Query: 322 SCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHMECGVLLV 363 SCNP + RDL S+L + R+ D FP+T H+E +L Sbjct: 365 SCNPVTQARDLDSVLDAGFRLMRVTPVDMFPHTSHIETVAVLA 407 >gi|116670204|ref|YP_831137.1| deoxyribonuclease [Arthrobacter sp. FB24] gi|116610313|gb|ABK03037.1| deoxyribonuclease/rho motif-related TRAM [Arthrobacter sp. FB24] Length = 453 Score = 59.3 bits (142), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 65/218 (29%), Positives = 92/218 (42%), Gaps = 44/218 (20%) Query: 169 ERLTVAGRTLI--------YRQIENSFTQPNAGINVHMLEWVLAATKGI--QGDLLE--- 215 E L + GRT + +R F Q I+ E ++ A KG G LE Sbjct: 254 ESLQLRGRTWVQESAAGHEFRVTGEGFWQ----IHRDAPETLVGALKGFLHDGGYLEPGA 309 Query: 216 ----LYCGNGNFSLVLARHFD---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268 LY G G F+ LA VL+VE A + AR N+ + V+IV+ Sbjct: 310 VVADLYAGAGLFTAALADAVGVTGSVLSVEGAPGTSRDARKNL--HGAPQVEIVQGR--- 364 Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPD 326 + + R++ N F + +DPPR+G A V ++ A P I Y+SC+P Sbjct: 365 -VERVLRQKPRN-----------FDALVLDPPRAGAGKAVVSQLMAAGPRAIAYVSCDPA 412 Query: 327 SLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLV 363 S RDL + L FD +P+T HME LL Sbjct: 413 SFARDLGYFRQGGWQLAGLRAFDLYPHTHHMETVALLT 450 >gi|227893601|ref|ZP_04011406.1| TrmA family tRNA (uracil-5-)-methyltransferase [Lactobacillus ultunensis DSM 16047] gi|227864593|gb|EEJ72014.1| TrmA family tRNA (uracil-5-)-methyltransferase [Lactobacillus ultunensis DSM 16047] Length = 465 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 82/392 (20%), Positives = 156/392 (39%), Gaps = 68/392 (17%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPNLQIFR--SEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66 +Y+QQL K DR+++++ + +++ + P+ R E ++ ++ Sbjct: 101 KYDQQLKFKEDRIKKLLNKYGFKEVKVNKILPSPLTKGYRNEI-----------VLPVRE 149 Query: 67 TKERMRIDYFMP---------GSLLINALMIEMMATIR----------LEPLLRAKLFQ- 106 K ++ + +F P S++ N ++ + +R +P + + Sbjct: 150 VKGQLEVGFFEPRTGRFIPLNKSIITNEAVVTAVYAVRDILRKLKVPAYDPNTNSGFIRD 209 Query: 107 IDYLTSQSDQA-IVTLIYHRLLDDAWRECAIRLRDALHARKYQI---------QLIGRAN 156 ID SQ + IVTLI H E + + LH + ++ G++N Sbjct: 210 IDVRRSQGKKGMIVTLITHENDRVDLPEIVGLITEKLHNVNGVVLNYNPHKTDEIFGKSN 269 Query: 157 KTKICL-DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LL 214 I L DYV++ L + ++ S+ Q N + + L+ D L+ Sbjct: 270 ---IPLWGNDYVEDELD----GIQFKISPKSYFQANGSQLKPITDLALSLLDLKDTDKLI 322 Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274 + +CG G L+ A+ V ++ + S++ AR N N ++N S ++ Sbjct: 323 DAFCGVGTVGLLAAKKVAAVRGIDAERVSIQDARENADTNKIDNATYYNGSVEQVLSRFA 382 Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCRDL 332 + E + I PP GL V + +P I+Y S NPD++ RDL Sbjct: 383 KNDE------------KGTVIMATPPAKGLSHGFVDAAAKMHPRRIVYGSTNPDTMVRDL 430 Query: 333 SILSTT-HTIERLALFDQFPYTRHMEC-GVLL 362 + +T + D P T ++C GVL+ Sbjct: 431 ACFKKKGYTCTEITPIDTAPQTPEVKCFGVLV 462 >gi|307729589|ref|YP_003906813.1| RNA methyltransferase, TrmA family [Burkholderia sp. CCGE1003] gi|307584124|gb|ADN57522.1| RNA methyltransferase, TrmA family [Burkholderia sp. CCGE1003] Length = 476 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 53/189 (28%), Positives = 79/189 (41%), Gaps = 22/189 (11%) Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 FTQ N IN ++ L + D +L+L+CG GNF+L LAR V+ +E ++ Sbjct: 298 FTQVNHAINRVLVGRALRLLAPARTDRVLDLFCGIGNFTLPLARIAKEVVGIEGSEVLTT 357 Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG-- 303 A N N V F E + L+ + F +DPPR G Sbjct: 358 RALANAELNGV-------AGHTSFACRNLFEVTADDLRALG----HFDKFLIDPPREGAL 406 Query: 304 ------LDDATVGMVQAYPHILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTRH 355 + A G I+Y+SCNP +L RD +L + + + + FP+T H Sbjct: 407 AVAKALAEIAQSGTGPLPARIVYVSCNPSTLARDSGLLVHEAGYRLVGAGVVNMFPHTSH 466 Query: 356 MECGVLLVR 364 +E L R Sbjct: 467 VESIALFER 475 >gi|260597259|ref|YP_003209830.1| 23S rRNA methyluridine methyltransferase [Cronobacter turicensis z3032] gi|260216436|emb|CBA29543.1| 23S rRNA (uracil-5-)-methyltransferase rumB [Cronobacter turicensis z3032] Length = 375 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 40/155 (25%), Positives = 71/155 (45%), Gaps = 18/155 (11%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + +L+CG G F L A + +EIA ++ R + + +V + S +F Sbjct: 237 MWDLFCGVGGFGLHCATPEMTLTGIEIAPEAIACCRASAQELGLRSVHFQALDSTDFATG 296 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCR 330 + + + V+PPR G+ +A + A +++Y SCN ++ + Sbjct: 297 QQAVPDL---------------VLVNPPRRGIGEALCEYLSRMAPRYMVYSSCNAQTMAK 341 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 D+ L + + R+ LFD FP+T H E LLVR+ Sbjct: 342 DIKQLRG-YRVVRVQLFDMFPHTAHYEVLTLLVRE 375 >gi|154508937|ref|ZP_02044579.1| hypothetical protein ACTODO_01453 [Actinomyces odontolyticus ATCC 17982] gi|153798571|gb|EDN80991.1| hypothetical protein ACTODO_01453 [Actinomyces odontolyticus ATCC 17982] Length = 431 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 46/166 (27%), Positives = 77/166 (46%), Gaps = 34/166 (20%) Query: 213 LLELYCGNGNFSLVLAR---HFDRVLAVEIAKPSVEAARYNIAA--------NHVNNVKI 261 ++ELY G G FS+ LAR RV+ +E + +V A N+AA +V+ + Sbjct: 286 VMELYSGAGLFSVPLARAVGESGRVVTLEGDEGAVRDAGENLAAFDWVDAFAGNVDREGV 345 Query: 262 VRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHIL 319 V +S + + + D+ + DPPR+G + A P ++ Sbjct: 346 VDLSGQ-----------LSAVPDV---------VVADPPRAGAGAEVCEAIAATGAPRVV 385 Query: 320 YISCNPDSLCRDLSILS-TTHTIERLALFDQFPYTRHMECGVLLVR 364 +SC+P + RDL L+ + +E L +D FP+T H+E +L R Sbjct: 386 LVSCDPAAGARDLRTLTEAGYQLESLQAWDLFPHTHHVEMVSVLSR 431 >gi|311064025|ref|YP_003970750.1| tRNA (Uracil-5-) -methyltransferase [Bifidobacterium bifidum PRL2010] gi|310866344|gb|ADP35713.1| tRNA (Uracil-5-) -methyltransferase [Bifidobacterium bifidum PRL2010] Length = 420 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 56/207 (27%), Positives = 91/207 (43%), Gaps = 23/207 (11%) Query: 169 ERLTVAGRTLIYRQIENSFTQPNAGINV----HMLEWVLAATKGIQGDLL-ELYCGNGNF 223 E +TV GR Y N F Q + V H+++ A G+ + +LY G G F Sbjct: 223 ETVTVNGRDFQYMVDANGFWQVHRQAPVMLAGHVIDLANKALDGMTSACIWDLYSGAGLF 282 Query: 224 SLVLAR---HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 +L LA R+L+VE K +V+ A+ N+ A ++ +V R T A Sbjct: 283 TLPLATMTAERTRMLSVEGGKTAVKNAQRNLRALNLPDVD-ARCGDVSATLAY------- 334 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSIL-ST 337 + H R + +DPPR+G + ++Y++C+P SL RD + L S Sbjct: 335 ----VPAHLSRPDLVVLDPPRAGAHAKVCRQIAQAGAKDVIYVACDPTSLARDTATLISL 390 Query: 338 THTIERLALFDQFPYTRHMECGVLLVR 364 + + + +D +P T H+E R Sbjct: 391 GYRLSDIRAYDIYPMTHHVETVAWFTR 417 >gi|172056678|ref|YP_001813138.1| RNA methyltransferase [Exiguobacterium sibiricum 255-15] gi|171989199|gb|ACB60121.1| RNA methyltransferase, TrmA family [Exiguobacterium sibiricum 255-15] Length = 461 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 80/386 (20%), Positives = 159/386 (41%), Gaps = 58/386 (15%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPI------HYRMRAEFHIWHDGDDLYHIMF 63 YE QL K D +R N++ P YR +++F + +G + ++ Sbjct: 93 YEGQLRYKEDMVRNAFTKSTKLNVEKSDIRPTIGTTEWEYRNKSQFAVGKEGTQIVSGLY 152 Query: 64 DQ-------------QTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYL 110 Q KE +R++ + + ++N + + + + + ++R + + Sbjct: 153 SANSNRLVAIDECIVQNKETLRVNKAV--TKILNDYNVPVYNSAKQDGVIRNIVVRTGIK 210 Query: 111 TSQSDQAIVTLI-YHRLLDDAWRE---------CAIRLRDALHARKYQIQLIGRANKTKI 160 T + +V + L+ R+ A+ + D + +R + +T+I Sbjct: 211 TGEIQVVLVAFKDGFKDLEGLSRDIYDIPGVISVALNINDKMTSRVF-------GEQTEI 263 Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCG 219 + ++E++ Y+ +F Q N M E V AA + +++ Y G Sbjct: 264 LRGVERIEEKMG----EFTYQLSPRAFFQLNPEQAERMYGEIVKAAALTGEERVVDAYAG 319 Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279 G+ L +A V +EI + +VE A ++ N+ + V ++ + +E Sbjct: 320 VGSIGLWIANGAKEVRGMEIVEEAVEDATAHMKQYGFNHAQYVVGKAETWIPRWVKE--- 376 Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCRDLS-ILS 336 + D+ I VDPPRSG D + M+ + I+Y+SCNP +L RD ++ Sbjct: 377 GWIPDVFI---------VDPPRSGCDTQLLNAMISSKAKKIIYVSCNPQTLARDCDHLMK 427 Query: 337 TTHTIERLALFDQFPYTRHMECGVLL 362 + + + +D FP T H+E V+L Sbjct: 428 AGYKVSYIQPYDMFPQTAHVEAIVVL 453 >gi|161702959|ref|YP_369356.2| 23S rRNA 5-methyluridine methyltransferase [Burkholderia sp. 383] gi|143580735|sp|Q39FQ4|RUMA_BURS3 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase Length = 465 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 56/190 (29%), Positives = 81/190 (42%), Gaps = 24/190 (12%) Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 FTQ N IN ++ L + D +L+L+CG GNF+L LAR V+ +E + Sbjct: 287 FTQVNHQINRVLVGRALRLLAPSRDDRVLDLFCGIGNFTLPLARLSREVMGIEGSDTLTT 346 Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY-RFKTIFVDPPRSG- 303 A N N V+ T A R E + DI + F +DPPR G Sbjct: 347 RALANARENGVDG---------HTTFACRNLFE---VTGDDIRALGAFDKFLIDPPREGA 394 Query: 304 -------LDDATVGMVQAYPHILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTR 354 + A G I+Y+SCNP +L RD +L + ++ + + FP T Sbjct: 395 LAVSKALAEIAQSGEGPLPKRIVYVSCNPSTLARDAGLLVHEAGYRLKGAGVVNMFPNTS 454 Query: 355 HMECGVLLVR 364 H+E L R Sbjct: 455 HVESIALFER 464 >gi|310794654|gb|EFQ30115.1| hypothetical protein GLRG_05259 [Glomerella graminicola M1.001] Length = 608 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 44/161 (27%), Positives = 74/161 (45%), Gaps = 20/161 (12%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L++ Y G+G F++ LA F ++IA+ S+E AR N R++ +Q Sbjct: 454 LIDAYSGSGLFTITLASLFQGSTGIDIAQDSIECARKN-----------ARLNGLPESQC 502 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCR 330 + +L + + +DPPR G D +G + + ++Y+SCN + R Sbjct: 503 NFLAADAPQLFAHVTYPADETVVVIDPPRKGCDADFLGQLLRFGPRRVVYVSCNVHTQAR 562 Query: 331 DLSIL-------STTHTIERLALFDQFPYTRHMECGVLLVR 364 D+ +L T + IE + FD FP T H+E +L R Sbjct: 563 DVGVLVRGDGGEGTRYEIESVVGFDFFPQTGHVEGVAVLNR 603 >gi|255953869|ref|XP_002567687.1| Pc21g06420 [Penicillium chrysogenum Wisconsin 54-1255] gi|211589398|emb|CAP95539.1| Pc21g06420 [Penicillium chrysogenum Wisconsin 54-1255] Length = 537 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 45/161 (27%), Positives = 74/161 (45%), Gaps = 22/161 (13%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 LL+ Y G+G F++ L+ F L V+I S+ +AR N AN + N + Sbjct: 381 LLDAYSGSGLFTITLSPLFKSSLGVDIGGDSIVSARENARANKLPNTGFAAADAATL--- 437 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGL-DDATVGMVQAYPH-ILYISCNPDSLCR 330 KD+ + + +DPPR G +D M+ P ++Y+SCN + R Sbjct: 438 ---------FKDVPYPPDQ-TLLVIDPPRKGCSEDFLRQMLDFKPRRVVYVSCNVHTQAR 487 Query: 331 DLSIL-------STTHTIERLALFDQFPYTRHMECGVLLVR 364 D++++ + + IE + FD FP T H+E +L R Sbjct: 488 DVAVMVQGDEKQNVRYEIESVRGFDFFPQTGHVEGVAILNR 528 >gi|68481799|ref|XP_715141.1| potential tRNA (Uracil-5-)-methyltransferase [Candida albicans SC5314] gi|46436751|gb|EAK96108.1| potential tRNA (Uracil-5-)-methyltransferase [Candida albicans SC5314] Length = 588 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 48/202 (23%), Positives = 98/202 (48%), Gaps = 21/202 (10%) Query: 178 LIYRQIENSFTQPNAGINVHMLEWV---LAATKGIQGDLLELYCGNGNFSLVLARHFD-- 232 +++ N F Q N I +L+++ + + +L++ YCG G F + L++ F+ Sbjct: 392 FLFQYDSNCFFQNNNAILPSVLDYIRYHINQSDKTIDNLIDTYCGVGFFGIALSKSFNEN 451 Query: 233 -RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291 +V +E+ + +++ A +N N ++ + V+ S + + E K I S + Sbjct: 452 TKVFGIELVEQAIKYANHNAKLNGLDPER-VQFVSGDASNIFNNEN----FKKSGI-SGK 505 Query: 292 FKTIFVDPPRSGLDDATVGMVQAY-PHIL-YISCNPDSLCRDLSIL-------STTHTIE 342 + VDP R G +++ + + + P I+ Y+SCN S RDL+ + + ++ Sbjct: 506 NSVVIVDPSRKGSNESFLQQLLDFEPEIVVYVSCNVFSQARDLATFENLQQNTNVKYKVK 565 Query: 343 RLALFDQFPYTRHMECGVLLVR 364 + FD FP T+H+E +L + Sbjct: 566 DVMGFDFFPQTKHVESIAILEK 587 >gi|319775106|ref|YP_004137594.1| 23S rRNA (uracil-5-)-methyltransferase rumB, fragment (pseudogene) [Haemophilus influenzae F3047] gi|329122980|ref|ZP_08251551.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Haemophilus aegyptius ATCC 11116] gi|317449697|emb|CBY85904.1| 23S rRNA (uracil-5-)-methyltransferase rumB, fragment (pseudogene) [Haemophilus influenzae F3047] gi|327471911|gb|EGF17351.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Haemophilus aegyptius ATCC 11116] Length = 392 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 50/159 (31%), Positives = 73/159 (45%), Gaps = 16/159 (10%) Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271 +L +L+CG G F L A+ I +E + I A N+ KI+ + F Sbjct: 242 NLWDLFCGVGGFGLHCAKALQEKWGKPIKLTGIEISSSAILAAS-NSAKILGLEHVNFQS 300 Query: 272 ---AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD-DATVGMVQAYPH-ILYISCNPD 326 A E + D+ + V+PPR G+ + + + Q PH ILY SCN Sbjct: 301 LDAASVIENKNENKPDL---------VIVNPPRRGIGKELSEFLNQIQPHFILYSSCNAM 351 Query: 327 SLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 ++ +DL L T + ++ LFD FP T H E VLL RK Sbjct: 352 TMGKDLQHL-TCYKPLKIQLFDMFPQTSHYEVLVLLERK 389 >gi|161650991|ref|YP_001119583.2| 23S rRNA 5-methyluridine methyltransferase [Burkholderia vietnamiensis G4] Length = 465 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 55/191 (28%), Positives = 82/191 (42%), Gaps = 26/191 (13%) Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 FTQ N IN ++ L + D +L+L+CG GNF+L LAR V+ +E ++ Sbjct: 287 FTQVNHQINRVLVGRALRLLAPSRDDRVLDLFCGIGNFTLPLARLAREVMGIEGSETLTT 346 Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRR--EREFNRLKDIDIHSYRFKTIFVDPPRSG 303 A N N V+ T A R E + L+ + F +DPPR G Sbjct: 347 RALANARENGVDG---------HTTFACRNLFEVTGDDLRALGA----FDKFLIDPPREG 393 Query: 304 --------LDDATVGMVQAYPHILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYT 353 + A G I+Y+SCNP +L RD +L + ++ + + FP T Sbjct: 394 ALAVSKALAEIAQSGEGPLPKRIVYVSCNPSTLARDAGLLVHEAGYRLKGAGVVNMFPNT 453 Query: 354 RHMECGVLLVR 364 H+E L R Sbjct: 454 SHVESIALFER 464 >gi|145630054|ref|ZP_01785836.1| 23S rRNA m(5)U747-methyltransferase [Haemophilus influenzae R3021] gi|144984335|gb|EDJ91758.1| 23S rRNA m(5)U747-methyltransferase [Haemophilus influenzae R3021] Length = 391 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 48/156 (30%), Positives = 73/156 (46%), Gaps = 10/156 (6%) Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271 +L +L+CG G F L A+ I +E + I A N+ KI+ + F Sbjct: 241 NLWDLFCGVGGFGLHCAKALQEKWGKPIKLTGIEISSSAILAAS-NSAKILDLEHVNFQS 299 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD-DATVGMVQAYPH-ILYISCNPDSLC 329 N+ ++ + + V+PPR G+ + + + Q PH ILY SCN ++ Sbjct: 300 LDAASVIENKNEN------KPDLVIVNPPRRGIGKELSEFLNQIQPHFILYSSCNAMTMG 353 Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 +DL L T + ++ LFD FP T H E VLL RK Sbjct: 354 KDLQHL-TCYKPLKIQLFDMFPQTSHYEVLVLLERK 388 >gi|134139005|gb|ABO54748.1| 23S rRNA m(5)U-1939 methyltransferase [Burkholderia vietnamiensis G4] Length = 434 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 55/190 (28%), Positives = 82/190 (43%), Gaps = 24/190 (12%) Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 FTQ N IN ++ L + D +L+L+CG GNF+L LAR V+ +E ++ Sbjct: 256 FTQVNHQINRVLVGRALRLLAPSRDDRVLDLFCGIGNFTLPLARLAREVMGIEGSETLTT 315 Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY-RFKTIFVDPPRSG- 303 A N N V+ T A R E + D+ + F +DPPR G Sbjct: 316 RALANARENGVDG---------HTTFACRNLFE---VTGDDLRALGAFDKFLIDPPREGA 363 Query: 304 -------LDDATVGMVQAYPHILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTR 354 + A G I+Y+SCNP +L RD +L + ++ + + FP T Sbjct: 364 LAVSKALAEIAQSGEGPLPKRIVYVSCNPSTLARDAGLLVHEAGYRLKGAGVVNMFPNTS 423 Query: 355 HMECGVLLVR 364 H+E L R Sbjct: 424 HVESIALFER 433 >gi|145640626|ref|ZP_01796209.1| 23S rRNA m(5)U747-methyltransferase [Haemophilus influenzae R3021] gi|145274552|gb|EDK14415.1| 23S rRNA m(5)U747-methyltransferase [Haemophilus influenzae 22.4-21] Length = 239 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 50/159 (31%), Positives = 73/159 (45%), Gaps = 16/159 (10%) Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271 +L +L+CG G F L A+ I +E + I A N+ KI+ + F Sbjct: 89 NLWDLFCGVGGFGLHCAKALQEKWGKPIKLTGIEISSSAILAAS-NSAKILGLEHVNFQS 147 Query: 272 ---AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD-DATVGMVQAYPH-ILYISCNPD 326 A E + D+ + V+PPR G+ + + + Q PH ILY SCN Sbjct: 148 LDAASVIENKNENKPDL---------VIVNPPRRGIGKELSEFLNQIQPHFILYSSCNAM 198 Query: 327 SLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 ++ +DL L T + ++ LFD FP T H E VLL RK Sbjct: 199 TMGKDLQHL-TCYKPLKIQLFDMFPQTSHYEVLVLLERK 236 >gi|213029731|ref|ZP_03344178.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 367 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 39/147 (26%), Positives = 67/147 (45%), Gaps = 18/147 (12%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + +L+CG G F L A ++ +EIA ++ A+ + A + + + S +F A Sbjct: 237 MWDLFCGVGGFGLHCATPQMQLTGIEIAPEAIACAKQSAAELGLTRLHFQALDSTQFATA 296 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330 + + V+PPR G+ + Q P I+Y SCN ++ + Sbjct: 297 QGETPDL---------------VLVNPPRRGIGKPLCDYLAQMAPRFIIYSSCNAQTMAQ 341 Query: 331 DLSILSTTHTIERLALFDQFPYTRHME 357 D+ L + I+R+ LFD FP+T H E Sbjct: 342 DIRHLP-NYRIQRVQLFDMFPHTAHYE 367 >gi|145632344|ref|ZP_01788079.1| 23S rRNA m(5)U747-methyltransferase [Haemophilus influenzae 3655] gi|229843981|ref|ZP_04464122.1| 23S rRNA methyluridine methyltransferase [Haemophilus influenzae 6P18H1] gi|144987251|gb|EDJ93781.1| 23S rRNA m(5)U747-methyltransferase [Haemophilus influenzae 3655] gi|229812975|gb|EEP48663.1| 23S rRNA methyluridine methyltransferase [Haemophilus influenzae 6P18H1] Length = 391 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 48/156 (30%), Positives = 73/156 (46%), Gaps = 10/156 (6%) Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271 +L +L+CG G F L A+ I +E + I A N+ KI+ + F Sbjct: 241 NLWDLFCGVGGFGLHCAKALQEKWGKPIKLTGIEISSSAILAAS-NSAKILDLEHVNFQS 299 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD-DATVGMVQAYPH-ILYISCNPDSLC 329 N+ ++ + + V+PPR G+ + + + Q PH ILY SCN ++ Sbjct: 300 LDAASVIENKNEN------KPDLVIVNPPRRGIGKELSEFLNQIQPHFILYSSCNAMTMG 353 Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 +DL L T + ++ LFD FP T H E VLL RK Sbjct: 354 KDLQHL-TCYKPLKIQLFDMFPQTSHYEVLVLLERK 388 >gi|302771483|ref|XP_002969160.1| hypothetical protein SELMODRAFT_170457 [Selaginella moellendorffii] gi|300163665|gb|EFJ30276.1| hypothetical protein SELMODRAFT_170457 [Selaginella moellendorffii] Length = 536 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 56/207 (27%), Positives = 86/207 (41%), Gaps = 31/207 (14%) Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG----DLLELYCGNGN 222 + ERL R L++ NSF Q N + E V A + ++L+L+CG G Sbjct: 338 ITERL----RGLVFEISANSFFQTNTSQAEVLYEVVEKACNLTEASSEMNMLDLFCGTGT 393 Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282 L +A + V E+ + +V AR N N++ N ++ + T F R Sbjct: 394 IGLSMANKVNHVYGYELVQEAVANARRNANRNNILNATFIQGDLNKLTSGFG--ANFPR- 450 Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILSTTHT 340 DI I DP R G+ + + ++Y+SCNP + RDL +L + Sbjct: 451 PDI---------IIADPNRPGMHPKLLQFILKSGAARVVYVSCNPATCARDLDVLCHSKD 501 Query: 341 IERLA---------LFDQFPYTRHMEC 358 LA D FP+T H+EC Sbjct: 502 GSDLAGGYRLLSVQPIDMFPHTPHVEC 528 >gi|309973539|gb|ADO96740.1| 23S rRNA m(5)U747-methyltransferase [Haemophilus influenzae R2846] Length = 391 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 48/156 (30%), Positives = 73/156 (46%), Gaps = 10/156 (6%) Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271 +L +L+CG G F L A+ I +E + I A N+ KI+ + F Sbjct: 241 NLWDLFCGVGGFGLHCAKALQEKWGKPIKLTGIEISSSAILAAS-NSAKILDLEHVNFQS 299 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD-DATVGMVQAYPH-ILYISCNPDSLC 329 N+ ++ + + V+PPR G+ + + + Q PH ILY SCN ++ Sbjct: 300 LDAASVIENKNEN------KPDLVIVNPPRRGIGKELSEFLNQIQPHFILYSSCNAMTMG 353 Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 +DL L T + ++ LFD FP T H E VLL RK Sbjct: 354 KDLQHL-TCYKPLKIQLFDMFPQTSHYEVLVLLERK 388 >gi|149184669|ref|ZP_01862987.1| putative RNA methyltransferase [Erythrobacter sp. SD-21] gi|148831989|gb|EDL50422.1| putative RNA methyltransferase [Erythrobacter sp. SD-21] Length = 397 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 53/180 (29%), Positives = 88/180 (48%), Gaps = 26/180 (14%) Query: 184 ENSFTQPNAGINVHMLEWVLAA-TKGIQGD---LLELYCGNGNFSLVLARHFDRVLAVEI 239 +NSF QP E VL + T GD + +L+ G G F+ L+ +VLAVE Sbjct: 231 QNSFRQPT-----RDGEQVLVSDTAEFVGDARTVADLFAGLGTFAFALSDPA-KVLAVEA 284 Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299 A+ + ++A N++ V + AM R+ N L ++ RF I +DP Sbjct: 285 ARDA------HLACKTAANMRGVPV------HAMHRDLFRNPLTAEEV--SRFGAIVLDP 330 Query: 300 PRSGLDDATVGMVQAYPH-ILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHME 357 PR+G + + Q+ ++Y+SCNP S RD+ +++ +E+L QF ++ H+E Sbjct: 331 PRAGAREQVAQIAQSTASRVVYVSCNPSSWARDVKTLVDAGFRLEKLRPVGQFRWSTHVE 390 >gi|320333842|ref|YP_004170553.1| (Uracil-5)-methyltransferase [Deinococcus maricopensis DSM 21211] gi|319755131|gb|ADV66888.1| (Uracil-5)-methyltransferase [Deinococcus maricopensis DSM 21211] Length = 407 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 42/154 (27%), Positives = 70/154 (45%), Gaps = 23/154 (14%) Query: 214 LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273 L+LY G+G LA F+RV+ V++A+ ++ R + + NV + F Sbjct: 273 LDLYGGSGAIGRHLAGQFERVVVVDVAQEALARGRRDAQLEGLRNVSFRHVHDAAF---- 328 Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRD 331 D D+ I VDPPR+GLD AT + ++Y+SC+P + RD Sbjct: 329 ---------PDADV-------IVVDPPRAGLDAATRDGIDGSVAGRLVYVSCDPATWARD 372 Query: 332 LS-ILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 + ++ + + D +P T H+E +L R Sbjct: 373 VGDLVRRGWRLGEVTPHDFYPQTSHVEVVSVLSR 406 >gi|315655217|ref|ZP_07908118.1| 23S rRNA methyluridine methyltransferase [Mobiluncus curtisii ATCC 51333] gi|315490472|gb|EFU80096.1| 23S rRNA methyluridine methyltransferase [Mobiluncus curtisii ATCC 51333] Length = 435 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 46/193 (23%), Positives = 81/193 (41%), Gaps = 14/193 (7%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFSLVLAR-HFDRVLAVEIAKP 242 +F Q N + M + +Q + +LYCG G F+ L+ +V VE+ P Sbjct: 242 GAFFQTNTAASQAMYTQAATWARELQPETAWDLYCGVGGFAFALSSAGVAQVTGVEVVGP 301 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT-------- 294 +++ A++ + + S + R I + ++ T Sbjct: 302 AIDGAKHAVTKLESATATVPVEPSNKNDGTPNIPSAAPRPHFITADATKWATNQKLVPPD 361 Query: 295 -IFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFP 351 + V+PPR GL ++ PH++Y SC ++L DL + + + I L D FP Sbjct: 362 LVVVNPPRRGLGPELSSWLERSGIPHLIYSSCFQETLVEDLRRMRS-YQIRAAKLVDMFP 420 Query: 352 YTRHMECGVLLVR 364 +T H+E VL+ R Sbjct: 421 HTSHVESVVLMSR 433 >gi|196010802|ref|XP_002115265.1| hypothetical protein TRIADDRAFT_59271 [Trichoplax adhaerens] gi|190582036|gb|EDV22110.1| hypothetical protein TRIADDRAFT_59271 [Trichoplax adhaerens] Length = 556 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 38/157 (24%), Positives = 71/157 (45%), Gaps = 22/157 (14%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +L++ CG G +++A++ +RV+ +E+ + ++E AR N N + N++ + Sbjct: 403 VLDICCGTGTIGILMAKNVNRVIGIEMVEDAIEDARVNAELNDIKNIEFI---------C 453 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY---PHILYISCNPDSLC 329 + E + L D ++ VDPPR+GL + ++ ++Y+SCNP Sbjct: 454 GKAEDKLPTLVD-NLSVISEVIAIVDPPRAGLHTRVIKALRRSLFIKKLIYVSCNPAMAV 512 Query: 330 RDLSILSTTHT---------IERLALFDQFPYTRHME 357 + L + T I + D FPYT E Sbjct: 513 TNFVELCSPRTNRLRGQPFKIMKALAVDLFPYTEQCE 549 >gi|221130274|ref|XP_002158803.1| PREDICTED: similar to trm2 tRNA methyltransferase 2 homolog A [Hydra magnipapillata] Length = 553 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 46/165 (27%), Positives = 76/165 (46%), Gaps = 24/165 (14%) Query: 213 LLELYCGNGNFSLVLARHFD-RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271 +L+L CG G + +A++ V+ +EI +V+ A +N AAN V N K + ++++ Sbjct: 333 ILDLCCGTGTIGICIAKNKRLPVVGIEICIQAVQDANFNSAANGVTNAKFICGAAEKVLH 392 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ---AYPHILYISCNPDSL 328 E NR+ +I + VDPPR+GL + ++ A I+++SC+P Sbjct: 393 -----NEINRINAKNIIA------IVDPPRAGLHKDVLKCLRSCAAIKKIIFVSCSPKQA 441 Query: 329 CRDLSILSTTHT---------IERLALFDQFPYTRHMECGVLLVR 364 +L L + +R D FP T H E V L R Sbjct: 442 ADNLIFLCQKQSKRRAGKPFKTKRAVPIDLFPMTPHCELIVELER 486 >gi|241662749|ref|YP_002981109.1| 23S rRNA 5-methyluridine methyltransferase [Ralstonia pickettii 12D] gi|240864776|gb|ACS62437.1| RNA methyltransferase, TrmA family [Ralstonia pickettii 12D] Length = 496 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 52/198 (26%), Positives = 86/198 (43%), Gaps = 29/198 (14%) Query: 175 GRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDR 233 G T+ ++ + FTQ N IN ++ L GD LL+L+CG GNF+L +A Sbjct: 305 GITMPFKPTD--FTQVNHQINRVLMSRALKLLDAQPGDRLLDLFCGIGNFTLPMATRARE 362 Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY-RF 292 V+ +E ++ A N N ++ + +F R + DI + +F Sbjct: 363 VMGIEGSEALTTRALANAQHNGLD-------AKTKFAC-----RNLFEVTADDIAALGKF 410 Query: 293 KTIFVDPPRSGLDDATVGMVQAY-----------PHILYISCNPDSLCRDLSIL--STTH 339 VDPPR G + + + I+Y+SCNP +L RD +L + Sbjct: 411 DRWLVDPPREGALAVSKALAELSQRGGEEADLLPKRIVYVSCNPATLARDAGLLVHEAGY 470 Query: 340 TIERLALFDQFPYTRHME 357 + + + FP+T H+E Sbjct: 471 RLAGAGVVNMFPHTSHVE 488 >gi|171321351|ref|ZP_02910308.1| RNA methyltransferase, TrmA family [Burkholderia ambifaria MEX-5] gi|171093369|gb|EDT38559.1| RNA methyltransferase, TrmA family [Burkholderia ambifaria MEX-5] Length = 434 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 55/190 (28%), Positives = 82/190 (43%), Gaps = 24/190 (12%) Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 FTQ N IN ++ L + D +L+L+CG GNF+L LAR V+ +E ++ Sbjct: 256 FTQVNHQINRVLVGRALRLLAPSRDDRVLDLFCGIGNFTLPLARLSREVMGIEGSETLTT 315 Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY-RFKTIFVDPPRSG- 303 A N N V+ T A R E + D+ + F +DPPR G Sbjct: 316 RALANARENGVDG---------HTTFACRNLFE---VTGDDLRALGAFDKFLIDPPREGA 363 Query: 304 -------LDDATVGMVQAYPHILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTR 354 + A G I+Y+SCNP +L RD +L + ++ + + FP T Sbjct: 364 LAVSKALAEIAQSGEGPLPKRIVYVSCNPSTLARDAGLLVHEAGYRLKGAGVVNMFPNTS 423 Query: 355 HMECGVLLVR 364 H+E L R Sbjct: 424 HVESIALFER 433 >gi|148826391|ref|YP_001291144.1| 23S rRNA methyluridine methyltransferase [Haemophilus influenzae PittEE] gi|229846018|ref|ZP_04466130.1| 23S rRNA methyluridine methyltransferase [Haemophilus influenzae 7P49H1] gi|167012641|sp|A5UDB0|RUMB_HAEIE RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName: Full=23S rRNA(M-5-U747)-methyltransferase gi|148716551|gb|ABQ98761.1| 23S rRNA m(5)U747-methyltransferase [Haemophilus influenzae PittEE] gi|229811022|gb|EEP46739.1| 23S rRNA methyluridine methyltransferase [Haemophilus influenzae 7P49H1] Length = 392 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 49/157 (31%), Positives = 73/157 (46%), Gaps = 12/157 (7%) Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI-AANHVNNVKIVRMSSKEFT 270 +L +L+CG G F L A+ I +E + I AA+H + KI+ + F Sbjct: 242 NLWDLFCGVGGFGLHCAKALQEKWGKPIKLTGIEISSSAILAASH--SAKILGLEHVNFQ 299 Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYPH-ILYISCNPDSL 328 N+ ++ + + V+PPR G+ + Q PH ILY SCN ++ Sbjct: 300 SLNAASVMENKNEN------KPDLVIVNPPRRGIGKQLSEFLNQIQPHFILYSSCNAMTM 353 Query: 329 CRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 +DL L T + ++ LFD FP T H E VLL RK Sbjct: 354 GKDLQHL-TCYKPLKIQLFDMFPQTSHYEVLVLLERK 389 >gi|293192606|ref|ZP_06609560.1| putative tRNA (Uracil-5-)-methyltransferase [Actinomyces odontolyticus F0309] gi|292820113|gb|EFF79110.1| putative tRNA (Uracil-5-)-methyltransferase [Actinomyces odontolyticus F0309] Length = 431 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 46/166 (27%), Positives = 77/166 (46%), Gaps = 34/166 (20%) Query: 213 LLELYCGNGNFSLVLAR---HFDRVLAVEIAKPSVEAARYNIAA--------NHVNNVKI 261 ++ELY G G FS+ LAR RV+ +E + +V A N+AA +V+ + Sbjct: 286 VMELYSGAGLFSVPLARAVGESGRVVTLEGDEGAVRDAGENLAAFDWVDAFAGNVDREGV 345 Query: 262 VRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHIL 319 V +S + + + D+ + DPPR+G + A P ++ Sbjct: 346 VDLSGQ-----------LSAVPDV---------VVADPPRAGAGAEVCEAIAATGAPRVV 385 Query: 320 YISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364 +SC+P + RDL L+ + +E L +D FP+T H+E +L R Sbjct: 386 LVSCDPAAGARDLRTLTEDGYQLESLQAWDLFPHTHHVEMVSVLSR 431 >gi|87199804|ref|YP_497061.1| (Uracil-5)-methyltransferase [Novosphingobium aromaticivorans DSM 12444] gi|87135485|gb|ABD26227.1| 23S rRNA m(5)U-1939 methyltransferase [Novosphingobium aromaticivorans DSM 12444] Length = 401 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 44/167 (26%), Positives = 77/167 (46%), Gaps = 21/167 (12%) Query: 200 EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259 EW+ A + +L+ G G F+ LA +VLAVE A+ E AA +N Sbjct: 253 EWLSGAAT-----VADLFSGLGTFAFALAGPATKVLAVEAAR---EPYMVCQAAARMNGR 304 Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA-YPHI 318 + + F +R E ++D RF + +DPPR+G + + + + Sbjct: 305 PVHALHRDLFRNPLRVE-------ELD----RFAAVLIDPPRAGAQEQVEQIAASKVARV 353 Query: 319 LYISCNPDSLCRD-LSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 +Y+SCNP S RD + +++ + + + QF ++ H+E L +R Sbjct: 354 VYVSCNPASWARDAVRLIAGGYRLAEVRPVGQFRWSTHVELASLFIR 400 >gi|302784258|ref|XP_002973901.1| hypothetical protein SELMODRAFT_100133 [Selaginella moellendorffii] gi|300158233|gb|EFJ24856.1| hypothetical protein SELMODRAFT_100133 [Selaginella moellendorffii] Length = 536 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 56/207 (27%), Positives = 86/207 (41%), Gaps = 31/207 (14%) Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG----DLLELYCGNGN 222 + ERL R L++ NSF Q N + E V A + ++L+L+CG G Sbjct: 338 ITERL----RGLVFEISANSFFQTNTSQAEVLYEVVEKACNLTEASSEMNMLDLFCGTGT 393 Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282 L +A + V E+ + +V AR N N++ N ++ + T F R Sbjct: 394 IGLSMANKVNHVYGYELVQEAVANARRNANRNNILNATFIQGDLNKLTSGFG--GNFPR- 450 Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILSTTHT 340 DI I DP R G+ + + ++Y+SCNP + RDL +L + Sbjct: 451 PDI---------IITDPNRPGMHPKLLQFILKSGAARVVYVSCNPATCARDLDVLCHSKD 501 Query: 341 IERLA---------LFDQFPYTRHMEC 358 LA D FP+T H+EC Sbjct: 502 GSDLAGGYRLLSVQPIDMFPHTPHVEC 528 >gi|239831306|ref|ZP_04679635.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Ochrobactrum intermedium LMG 3301] gi|239823573|gb|EEQ95141.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Ochrobactrum intermedium LMG 3301] Length = 413 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 41/153 (26%), Positives = 75/153 (49%), Gaps = 15/153 (9%) Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274 +L+CG G F+L +A V AVE ++ A + HV +K V + ++ + Sbjct: 274 DLFCGVGTFALRIAEK-SAVHAVE--NDALALAALDRGVRHVQGLKPVSVERRDLFRRPL 330 Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA-YPHILYISCNPDSLCRDLS 333 +E + + DPPR+G ++ + + ++ ++ +SCNP +L RDL+ Sbjct: 331 MPKEL----------LPYNAVVFDPPRAGAEEQALELAKSKVEKVVAVSCNPVTLARDLA 380 Query: 334 IL-STTHTIERLALFDQFPYTRHMECGVLLVRK 365 IL + + R+ DQF ++ H+E LV+K Sbjct: 381 ILVKGGYRVTRVTPIDQFLWSPHVEAVATLVKK 413 >gi|302413229|ref|XP_003004447.1| tRNA (uracil-5-)-methyltransferase [Verticillium albo-atrum VaMs.102] gi|261357023|gb|EEY19451.1| tRNA (uracil-5-)-methyltransferase [Verticillium albo-atrum VaMs.102] Length = 559 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 43/166 (25%), Positives = 76/166 (45%), Gaps = 27/166 (16%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV--NNVKIVRMSSKEFT 270 L++ Y G+G F++ L+ F + ++IA S+ +AR N N + + + E Sbjct: 403 LIDAYSGSGLFTITLSGIFKTSMGIDIAADSIASARKNALLNSFTEDQCTFLAADAPELF 462 Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSL 328 + +R + + + +DPPR G D + +G + + ++Y+SCN + Sbjct: 463 KHVRYDPDET-------------VVILDPPRKGCDASFLGQLLDFGPRRVVYVSCNVHTQ 509 Query: 329 CRDLSIL----------STTHTIERLALFDQFPYTRHMECGVLLVR 364 RD+ +L T + IE L FD FP T H+E +L R Sbjct: 510 ARDVGVLVRGEVEGQKKRTRYEIESLRGFDFFPQTGHVEGVAVLNR 555 >gi|301169683|emb|CBW29284.1| 23S rRNA m(5)U747 methyltransferase [Haemophilus influenzae 10810] Length = 392 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 49/157 (31%), Positives = 75/157 (47%), Gaps = 12/157 (7%) Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI-AANHVNNVKIVRMSSKEFT 270 +L +L+CG G F L A+ I +E + I AA+H + KI+ + F Sbjct: 242 NLWDLFCGVGGFGLHCAKALQEKWGKPIKLTGIEISSSAILAASH--SAKILGLEHVNFQ 299 Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD-DATVGMVQAYPH-ILYISCNPDSL 328 N+ ++ + + V+PPR G+ + + + Q PH ILY SCN ++ Sbjct: 300 SLNAASVIENKNEN------KPDLVIVNPPRRGIGKELSEFLNQIQPHFILYSSCNAMTM 353 Query: 329 CRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 +DL L T + ++ LFD FP T H E VLL RK Sbjct: 354 GKDLQHL-TCYKPLKIQLFDMFPQTSHYEVLVLLERK 389 >gi|321474913|gb|EFX85877.1| hypothetical protein DAPPUDRAFT_208793 [Daphnia pulex] Length = 530 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 49/173 (28%), Positives = 79/173 (45%), Gaps = 30/173 (17%) Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271 ++L++ CG G L LA+ RV VE+ + +VE AR N + N + N V Sbjct: 364 NILDVCCGTGTIGLSLAKKCRRVYGVELVESAVEDARSNASKNGITNCVFV--------- 414 Query: 272 AMRREREFNRL------KDIDIHSYRFKTIFV-DPPRSGLDDATVGMVQAYPHI---LYI 321 A + E E N L KD++ K + + DPPR+GL ++++ I +YI Sbjct: 415 AGKAEDEVNNLIDGIKQKDLEEGVEGGKIVAILDPPRAGLHKKCCQLLRSAERIERLIYI 474 Query: 322 SCNPDSLCRDLSILSTTHT----------IERLALFDQFPYTRHMECGVLLVR 364 SCN + + L + ++ +A+ D FP T H E ++L R Sbjct: 475 SCNAQAAMKSFIDLCRAQSNAYGGIPFIPVKAMAV-DLFPDTPHCEFILVLER 526 >gi|145640956|ref|ZP_01796538.1| tRNA (uracil-5-)-methyltransferase [Haemophilus influenzae R3021] gi|145274470|gb|EDK14334.1| tRNA (uracil-5-)-methyltransferase [Haemophilus influenzae 22.4-21] Length = 79 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 25/54 (46%), Positives = 36/54 (66%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDL 58 L I QY + L +K+++L ++ F P++Q+F S HYRMRAEF IWH+ DD Sbjct: 3 LPISQYNELLQKKLEKLTALLHPFNAPDIQVFDSPTSHYRMRAEFRIWHEQDDF 56 >gi|260581961|ref|ZP_05849757.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Haemophilus influenzae NT127] gi|260095154|gb|EEW79046.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Haemophilus influenzae NT127] Length = 392 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 48/156 (30%), Positives = 73/156 (46%), Gaps = 10/156 (6%) Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271 +L +L+CG G F L A+ I +E + I A N+ KI+ + F Sbjct: 242 NLWDLFCGVGGFGLHCAKALQEKWGKPIKLTGIEISSSAILAAS-NSAKILDLEHVNFQS 300 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL-DDATVGMVQAYPH-ILYISCNPDSLC 329 N+ ++ + + V+PPR G+ + + + Q PH ILY SCN ++ Sbjct: 301 LDAASVIENKNEN------KPDLVIVNPPRRGIGKELSEFLNQIQPHFILYSSCNAMTMG 354 Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 +DL L T + ++ LFD FP T H E VLL RK Sbjct: 355 KDLQHL-TCYKPLKIQLFDMFPQTSHYEVLVLLERK 389 >gi|118473429|ref|YP_887104.1| RNA methyltransferase [Mycobacterium smegmatis str. MC2 155] gi|118174716|gb|ABK75612.1| putative RNA methyltransferase [Mycobacterium smegmatis str. MC2 155] Length = 397 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 43/156 (27%), Positives = 73/156 (46%), Gaps = 23/156 (14%) Query: 215 ELYCGNGNFSLVLARHFDR---VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271 +LY G G F+ LA V+ V+ ++ S +AR +A + +V ++ T Sbjct: 259 DLYGGAGVFAASLAEQVGESGHVVTVDTSRGSSRSARAALA--DLKSVSVI-------TD 309 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLC 329 ++RR + R +DPPR+G + + + A P I++I C S Sbjct: 310 SVRRA--------LATQHQRADVAVLDPPRTGANREVIDQIAAADVPRIIHIGCEAASFA 361 Query: 330 RDLSI-LSTTHTIERLALFDQFPYTRHMECGVLLVR 364 RD+ + L + +E + +FD FP T H+EC +L R Sbjct: 362 RDVGLYLRHGYHVEEIRVFDSFPLTHHIECVAVLNR 397 >gi|296125501|ref|YP_003632753.1| (uracil-5)-methyltransferase [Brachyspira murdochii DSM 12563] gi|296017317|gb|ADG70554.1| (Uracil-5)-methyltransferase [Brachyspira murdochii DSM 12563] Length = 397 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 42/154 (27%), Positives = 75/154 (48%), Gaps = 32/154 (20%) Query: 213 LLELYCGNGNFSLVLA---RHFDR---VLAVEIAKPSVE-AARYNIAANHVNNVKIVRMS 265 ++ELY G+G F+ + + F++ ++ EI+K SV A +YN Sbjct: 259 IIELYAGSGFFTAAIESKLKSFNKEYKFISSEISKDSVYIANKYNFN------------- 305 Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG--MVQAYPHILYISC 323 ++ E F LK+I+ Y + +DPPR G+D T+ + I+Y+SC Sbjct: 306 -------IKNEESFITLKNIN---YDIDALVLDPPREGIDKKTINEIIRIKPKKIIYVSC 355 Query: 324 NPDSLCRDLSILSTTHTIERLALFDQFPYTRHME 357 +P + RD+++L + + L++ D F T H+E Sbjct: 356 DPMTFSRDINLLKDYYKLSDLSIIDMFADTYHIE 389 >gi|238926776|ref|ZP_04658536.1| TrmA family RNA methyltransferase [Selenomonas flueggei ATCC 43531] gi|238885308|gb|EEQ48946.1| TrmA family RNA methyltransferase [Selenomonas flueggei ATCC 43531] Length = 465 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 56/188 (29%), Positives = 86/188 (45%), Gaps = 27/188 (14%) Query: 181 RQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240 RQ E + Q ++H E V+ A YCG G +L LA+ +V +EI Sbjct: 300 RQAERLYEQALTYADLHGTETVIDA-----------YCGTGTITLFLAQKARKVYGIEIV 348 Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300 +P++ AR N N+V N + + + A+ ++ R + VDPP Sbjct: 349 QPAILDARKNARDNNVKNAEFIVGDATAVMPALYKQ------------GIRPDVVVVDPP 396 Query: 301 RSGLDDATV-GMVQAYPH-ILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHME 357 R G + + P I+Y+SCNP +L RDL+IL + + + D FP T H+E Sbjct: 397 RVGCTETVLRTFANMKPQRIVYVSCNPATLARDLAILKELGYLAQEVQPVDLFPQTSHVE 456 Query: 358 CGVLLVRK 365 V L+RK Sbjct: 457 -NVCLLRK 463 >gi|320094745|ref|ZP_08026494.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Actinomyces sp. oral taxon 178 str. F0338] gi|319978309|gb|EFW09903.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Actinomyces sp. oral taxon 178 str. F0338] Length = 391 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 53/196 (27%), Positives = 80/196 (40%), Gaps = 37/196 (18%) Query: 186 SFTQPNAGINVHM----LEWVLAATKG--IQGDLLELYCGNGNFSLVLARHFDRVLAVEI 239 SFTQ NA + + +W G L +LYCG G F+L H + Sbjct: 211 SFTQTNAAVAGRLYRQAAQWASLPLPGGAAPSSLWDLYCGVGGFAL----HASHAGVPAV 266 Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSK---EFTQAMRREREFNRLKDIDIHSYRFKTIF 296 V A A + + + R ++ + A R + + D+ + Sbjct: 267 TGVEVSEAAIASAISRARALGLTRDQARFVADDATAWARAQSASGAPDV---------VV 317 Query: 297 VDPPRSG--------LDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFD 348 V+PPR G LD T P ++Y SCNP +L +DL+ + + T +FD Sbjct: 318 VNPPRRGIGLELASWLDGCTA------PRVIYSSCNPTTLAKDLAAMPSLRTTHGR-VFD 370 Query: 349 QFPYTRHMECGVLLVR 364 FP+T H+E VLL R Sbjct: 371 MFPHTAHVEAAVLLER 386 >gi|291408091|ref|XP_002720420.1| PREDICTED: TRM2 tRNA methyltransferase 2 homolog B isoform 1 [Oryctolagus cuniculus] Length = 503 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 48/197 (24%), Positives = 84/197 (42%), Gaps = 28/197 (14%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 ++F Q N ML + G+ + LL++ CG G L LA+H +VL +E+ + Sbjct: 318 DAFFQVNTA-GAEMLYQTVGELSGVNANTILLDICCGTGAIGLSLAQHASQVLGIELVEQ 376 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302 +VE AR+ A N + N + +++ + + +E + V+PPR+ Sbjct: 377 AVEDARWTAAFNGITNCEFHAGRAEKILPWLLKSKE----------GVQPVVAVVNPPRA 426 Query: 303 GLDDATVGMV---QAYPHILYISC--------NPDSLC----RDLSILSTTHTIERLALF 347 GL V + +A ++++SC N LC +L + + Sbjct: 427 GLHHRVVQAIRNCRAIRTLVFVSCKLHGETTRNITELCCPPDSAKKLLGEPFVLRQAVPV 486 Query: 348 DQFPYTRHMECGVLLVR 364 D FP+T H E +L R Sbjct: 487 DLFPHTAHCELALLCTR 503 >gi|289825022|ref|ZP_06544385.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] Length = 368 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 39/148 (26%), Positives = 67/148 (45%), Gaps = 18/148 (12%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + +L+CG G F L A ++ +EIA ++ A+ + A + + + S +F A Sbjct: 237 MWDLFCGVGGFGLHCATPQMQLTGIEIAPEAIACAKQSAAELGLTRLHFQALDSTQFATA 296 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330 + + V+PPR G+ + Q P I+Y SCN ++ + Sbjct: 297 QGETPDL---------------VLVNPPRRGIGKPLCDYLAQMAPRFIIYSSCNAQTMAQ 341 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMEC 358 D+ L + I+R+ LFD FP R M+C Sbjct: 342 DIRHLP-NYRIQRVQLFDMFPLPRIMKC 368 >gi|241958416|ref|XP_002421927.1| tRNA (uracil-5-)-methyltransferase, putative; transfer RNA methyltransferase, putative [Candida dubliniensis CD36] gi|223645272|emb|CAX39928.1| tRNA (uracil-5-)-methyltransferase, putative [Candida dubliniensis CD36] Length = 553 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 46/202 (22%), Positives = 99/202 (49%), Gaps = 21/202 (10%) Query: 178 LIYRQIENSFTQPNAGINVHMLEWV---LAATKGIQGDLLELYCGNGNFSLVLARHFD-- 232 +++ N F Q N I +L+++ + + +L++ YCG G F + L++ F+ Sbjct: 357 FLFQYDSNCFFQNNNAILPSVLDYIRYHINQSDKTIDNLIDTYCGVGFFGIALSKSFNEN 416 Query: 233 -RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291 ++ +E+ + +++ A +N N ++ + V+ S + + ++ K I S + Sbjct: 417 TKIFGIELVEQAIKYANHNAKLNGLDPER-VQFVSGDASNIFNNDK----FKKSGI-SGK 470 Query: 292 FKTIFVDPPRSGLDDATVGMVQAY-PHIL-YISCNPDSLCRDLSIL-------STTHTIE 342 + VDP R G +++ + + + P I+ Y+SCN S RDL+ + + ++ Sbjct: 471 NSVVIVDPSRKGSNESFLQQLLNFEPEIVVYVSCNVFSQARDLATFENLQQHTNVKYKVK 530 Query: 343 RLALFDQFPYTRHMECGVLLVR 364 + FD FP T+H+E +L + Sbjct: 531 DVMGFDFFPQTKHVESIAILEK 552 >gi|183219518|ref|YP_001837514.1| putative tRNA (uracil-5-)-methyltransferase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189909660|ref|YP_001961215.1| tRNA (uracil-5-)-methyltransferase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167774336|gb|ABZ92637.1| tRNA (uracil-5-)-methyltransferase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167777940|gb|ABZ96238.1| Putative tRNA (uracil-5-)-methyltransferase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 399 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 40/147 (27%), Positives = 65/147 (44%), Gaps = 16/147 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ Y G G S +A VL +E S A ++ N V+NV+ + E Sbjct: 256 VIDAYSGIGTISFWIAGQSKEVLGIEENPNSHRTALESLKYNKVHNVRFRKGRVAEVLPT 315 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCR 330 + + + TI +DPPR+GL + A + I+Y+SC+P SL Sbjct: 316 L--------------YGKNYDTIVLDPPRTGLGAEVTETILAMGFKKIVYVSCDPMSLRE 361 Query: 331 DLSILSTTHTIERLALFDQFPYTRHME 357 D +L+ + + L D FP T H+E Sbjct: 362 DSILLTKQYFLNSLQPVDMFPRTDHVE 388 >gi|86136790|ref|ZP_01055368.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Roseobacter sp. MED193] gi|85826114|gb|EAQ46311.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Roseobacter sp. MED193] Length = 415 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 48/177 (27%), Positives = 80/177 (45%), Gaps = 16/177 (9%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 SF Q +L VL TKG + +++ + G G FSL LA + VLA+E Sbjct: 242 GSFLQATRDGEAALLAGVLEITKGAK-RIVDFFAGCGTFSLPLAAQAE-VLALE-----G 294 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR--FKTIFVDPPRS 302 E A N + ++ + E R N L D+ + ++ +DPPR+ Sbjct: 295 EPAMIKALENGWRQARGLKKVTAEVRDLFR-----NPLLPEDLKPFGAFYEAAVIDPPRA 349 Query: 303 GLDDATVGMVQA-YPHILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHME 357 G + + +A P I Y+SCNP + RD +++ + + + + DQF ++ H E Sbjct: 350 GAEAQVAQLAEARMPVIAYVSCNPVTFARDAKALVEAGYGLNWVQVVDQFRWSAHTE 406 >gi|238879827|gb|EEQ43465.1| conserved hypothetical protein [Candida albicans WO-1] Length = 588 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 47/202 (23%), Positives = 98/202 (48%), Gaps = 21/202 (10%) Query: 178 LIYRQIENSFTQPNAGINVHMLEWV---LAATKGIQGDLLELYCGNGNFSLVLARHFD-- 232 +++ N F Q N I +L+++ + + +L++ YCG G F + L++ F+ Sbjct: 392 FLFQYDSNCFFQNNNAILPSVLDYIRYHINQSDKTIDNLIDTYCGVGFFGIALSKSFNEN 451 Query: 233 -RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291 ++ +E+ + +++ A +N N ++ + V+ S + + E K I S + Sbjct: 452 TKIFGIELVEQAIKYANHNAKLNGLDPER-VQFVSGDASNIFNNEN----FKKSGI-SGK 505 Query: 292 FKTIFVDPPRSGLDDATVGMVQAY-PHIL-YISCNPDSLCRDLSIL-------STTHTIE 342 + VDP R G +++ + + + P I+ Y+SCN S RDL+ + + ++ Sbjct: 506 NSVVIVDPSRKGSNESFLQQLLDFEPEIVVYVSCNVFSQARDLATFENLQQNTNVKYKVK 565 Query: 343 RLALFDQFPYTRHMECGVLLVR 364 + FD FP T+H+E +L + Sbjct: 566 DVMGFDFFPQTKHVESIAILEK 587 >gi|145634134|ref|ZP_01789845.1| 23S rRNA m(5)U747-methyltransferase [Haemophilus influenzae PittAA] gi|145268578|gb|EDK08571.1| 23S rRNA m(5)U747-methyltransferase [Haemophilus influenzae PittAA] Length = 193 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 50/159 (31%), Positives = 73/159 (45%), Gaps = 16/159 (10%) Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271 +L +L+CG G F L A+ I +E + I A N+ KI+ + F Sbjct: 43 NLWDLFCGVGGFGLHCAKALQEKWGKPIKLTGIEISSSAILAAS-NSAKILDLEHVNFQS 101 Query: 272 ---AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD-DATVGMVQAYPH-ILYISCNPD 326 A E + D+ + V+PPR G+ + + + Q PH ILY SCN Sbjct: 102 LDAASVIENKNENKPDL---------VIVNPPRRGIGKELSEFLNQIQPHFILYSSCNAM 152 Query: 327 SLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 ++ +DL L T + ++ LFD FP T H E VLL RK Sbjct: 153 TMGKDLQHL-TCYKPLKIQLFDMFPQTSHYEVLVLLERK 190 >gi|170733177|ref|YP_001765124.1| 23S rRNA 5-methyluridine methyltransferase [Burkholderia cenocepacia MC0-3] gi|169816419|gb|ACA91002.1| RNA methyltransferase, TrmA family [Burkholderia cenocepacia MC0-3] Length = 465 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 55/190 (28%), Positives = 81/190 (42%), Gaps = 24/190 (12%) Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 FTQ N IN ++ L + D +L+L+CG GNF+L LAR V+ +E + Sbjct: 287 FTQVNHQINRVLVGRALRLLAPSRDDRVLDLFCGIGNFTLPLARLSREVMGIEGSDTLTT 346 Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY-RFKTIFVDPPRSG- 303 A N N V+ T A R E + D+ + F +DPPR G Sbjct: 347 RALANARENGVDG---------HTTFACRNLFE---VTGDDLRALGAFDKFLIDPPREGA 394 Query: 304 -------LDDATVGMVQAYPHILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTR 354 + A G I+Y+SCNP +L RD +L + ++ + + FP T Sbjct: 395 LAVSKALAEIAQSGAGPLPKRIVYVSCNPSTLARDAGLLVHEAGYRLKGAGVVNMFPNTS 454 Query: 355 HMECGVLLVR 364 H+E L R Sbjct: 455 HVESIALFER 464 >gi|260576139|ref|ZP_05844132.1| (Uracil-5)-methyltransferase [Rhodobacter sp. SW2] gi|259021619|gb|EEW24922.1| (Uracil-5)-methyltransferase [Rhodobacter sp. SW2] Length = 412 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 44/150 (29%), Positives = 75/150 (50%), Gaps = 21/150 (14%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA---RYNIAANHVNNVKIVRMSSKEF 269 +++L+ G G F+L LA + + VLAVE EAA + +K V ++++ Sbjct: 266 IVDLFAGVGTFALPLAENAE-VLAVE-----AEAAMMMALDKGWRQAEGLKRVTATTRDL 319 Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA-YPHILYISCNPDSL 328 RR E + K ID + +DPPR+G + T + +A P I +SCNP + Sbjct: 320 ---FRRPLEPDEFKGID-------AVVIDPPRAGAEAQTATLARAQVPVIAAVSCNPVTF 369 Query: 329 CRDLSI-LSTTHTIERLALFDQFPYTRHME 357 RD + L+ + ++ + DQF ++ H+E Sbjct: 370 ARDTRVLLAAGYHLDWVQTVDQFRWSAHVE 399 >gi|258542731|ref|YP_003188164.1| ribosomal RNA large subunit 23S/tRNA (uracil-5-)methyltransferase [Acetobacter pasteurianus IFO 3283-01] gi|256633809|dbj|BAH99784.1| ribosomal RNA large subunit 23S/tRNA (Uracil-5-)methyltransferase [Acetobacter pasteurianus IFO 3283-01] gi|256636868|dbj|BAI02837.1| ribosomal RNA large subunit 23S/tRNA (Uracil-5-)methyltransferase [Acetobacter pasteurianus IFO 3283-03] gi|256639921|dbj|BAI05883.1| ribosomal RNA large subunit 23S/tRNA (Uracil-5-)methyltransferase [Acetobacter pasteurianus IFO 3283-07] gi|256642977|dbj|BAI08932.1| ribosomal RNA large subunit 23S/tRNA (Uracil-5-)methyltransferase [Acetobacter pasteurianus IFO 3283-22] gi|256646032|dbj|BAI11980.1| ribosomal RNA large subunit 23S/tRNA (Uracil-5-)methyltransferase [Acetobacter pasteurianus IFO 3283-26] gi|256649085|dbj|BAI15026.1| ribosomal RNA large subunit 23S/tRNA (Uracil-5-)methyltransferase [Acetobacter pasteurianus IFO 3283-32] gi|256652072|dbj|BAI18006.1| ribosomal RNA large subunit 23S/tRNA (Uracil-5-)methyltransferase [Acetobacter pasteurianus IFO 3283-01-42C] gi|256655129|dbj|BAI21056.1| ribosomal RNA large subunit 23S/tRNA (Uracil-5-)methyltransferase [Acetobacter pasteurianus IFO 3283-12] Length = 432 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 42/157 (26%), Positives = 69/157 (43%), Gaps = 19/157 (12%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + ELY G G + LA H RV A E P++EA + ++ Sbjct: 284 ITELYAGCGTLTFPLAEHA-RVNAYEGYAPALEALKKATGGTRISPFC------------ 330 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP-HILYISCNPDSLCRD 331 R+ N + + +DPP +G + Q P HI+Y+SCNP +L +D Sbjct: 331 ----RDLNHQPLLAKEIAASAVVVLDPPHAGAKLQMRQIAQGLPNHIVYVSCNPAALVQD 386 Query: 332 LSILSTT-HTIERLALFDQFPYTRHMECGVLLVRKPS 367 S+L+ +T+E + + DQF ++ +E R+ S Sbjct: 387 ASLLAKAGYTVENVTVIDQFLWSAEIEAVCSFKRESS 423 >gi|172060777|ref|YP_001808429.1| 23S rRNA 5-methyluridine methyltransferase [Burkholderia ambifaria MC40-6] gi|171993294|gb|ACB64213.1| RNA methyltransferase, TrmA family [Burkholderia ambifaria MC40-6] Length = 484 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 55/190 (28%), Positives = 81/190 (42%), Gaps = 24/190 (12%) Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 FTQ N IN ++ L + D +L+L+CG GNF+L LAR V+ +E + Sbjct: 306 FTQVNHQINRVLVGRALRLLAPSRDDRVLDLFCGIGNFTLPLARLSREVMGIEGSDTLTT 365 Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY-RFKTIFVDPPRSG- 303 A N N V+ T A R E + D+ + F +DPPR G Sbjct: 366 RALANARENGVDG---------HTTFACRNLFE---VTGDDLRALGAFDKFLIDPPREGA 413 Query: 304 -------LDDATVGMVQAYPHILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTR 354 + A G I+Y+SCNP +L RD +L + ++ + + FP T Sbjct: 414 LAVSKALAEIAQSGAGPLPKRIVYVSCNPSTLARDAGLLVHEAGYRLKGAGVVNMFPNTS 473 Query: 355 HMECGVLLVR 364 H+E L R Sbjct: 474 HVESIALFER 483 >gi|107029004|ref|YP_626099.1| 23S rRNA 5-methyluridine methyltransferase [Burkholderia cenocepacia AU 1054] gi|116689838|ref|YP_835461.1| 23S rRNA 5-methyluridine methyltransferase [Burkholderia cenocepacia HI2424] gi|254248066|ref|ZP_04941387.1| tRNA (uracil-5-)-methyltransferase/TrmA [Burkholderia cenocepacia PC184] gi|123179925|sp|Q1BGX9|RUMA_BURCA RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|143580671|sp|A0K7U1|RUMA_BURCH RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|105898168|gb|ABF81126.1| 23S rRNA m(5)U-1939 methyltransferase [Burkholderia cenocepacia AU 1054] gi|116647927|gb|ABK08568.1| 23S rRNA m(5)U-1939 methyltransferase [Burkholderia cenocepacia HI2424] gi|124872842|gb|EAY64558.1| tRNA (uracil-5-)-methyltransferase/TrmA [Burkholderia cenocepacia PC184] Length = 465 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 55/190 (28%), Positives = 81/190 (42%), Gaps = 24/190 (12%) Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 FTQ N IN ++ L + D +L+L+CG GNF+L LAR V+ +E + Sbjct: 287 FTQVNHQINRVLVGRALRLLAPSRDDRVLDLFCGIGNFTLPLARLSREVMGIEGSDTLTT 346 Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY-RFKTIFVDPPRSG- 303 A N N V+ T A R E + D+ + F +DPPR G Sbjct: 347 RALANARENGVDG---------HTTFACRNLFE---VTGDDLRALGAFDKFLIDPPREGA 394 Query: 304 -------LDDATVGMVQAYPHILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTR 354 + A G I+Y+SCNP +L RD +L + ++ + + FP T Sbjct: 395 LAVSKALAEIAQSGAGPLPKRIVYVSCNPSTLARDAGLLVHEAGYRLKGAGVVNMFPNTS 454 Query: 355 HMECGVLLVR 364 H+E L R Sbjct: 455 HVESIALFER 464 >gi|170703615|ref|ZP_02894357.1| RNA methyltransferase, TrmA family [Burkholderia ambifaria IOP40-10] gi|170131472|gb|EDT00058.1| RNA methyltransferase, TrmA family [Burkholderia ambifaria IOP40-10] Length = 484 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 55/190 (28%), Positives = 82/190 (43%), Gaps = 24/190 (12%) Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 FTQ N IN ++ L + D +L+L+CG GNF+L LAR V+ +E ++ Sbjct: 306 FTQVNHQINRVLVGRALRLLAPSRDDRVLDLFCGIGNFTLPLARLSREVMGIEGSETLTT 365 Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY-RFKTIFVDPPRSG- 303 A N N V+ T A R E + D+ + F +DPPR G Sbjct: 366 RALANARENGVDG---------HTTFACRNLFE---VTGDDLRALGAFDKFLIDPPREGA 413 Query: 304 -------LDDATVGMVQAYPHILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTR 354 + A G I+Y+SCNP +L RD +L + ++ + + FP T Sbjct: 414 LAVSKALAEIAQSGEGPLPKRIVYVSCNPSTLARDAGLLVHEAGYRLKGAGVVNMFPNTS 473 Query: 355 HMECGVLLVR 364 H+E L R Sbjct: 474 HVESIALFER 483 >gi|269792184|ref|YP_003317088.1| (Uracil-5)-methyltransferase [Thermanaerovibrio acidaminovorans DSM 6589] gi|269099819|gb|ACZ18806.1| (Uracil-5)-methyltransferase [Thermanaerovibrio acidaminovorans DSM 6589] Length = 353 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 43/160 (26%), Positives = 75/160 (46%), Gaps = 16/160 (10%) Query: 206 TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265 + G+ +LYCG+G L+ L VEI+ ++ A+ N ++ + + Sbjct: 205 SPGVGLGAADLYCGDGVSLRALSSAGAETLGVEISGLALRMAKLNSPSSKLLQGTCAQ-R 263 Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISC 323 + + M R +E RL +V+PPRSGL+ V ++ + Y+SC Sbjct: 264 TPQIGLFMSRFQENQRLA------------YVNPPRSGLEAEVVDLLGTTKVRRLAYLSC 311 Query: 324 NPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLL 362 + +L RDL +L + ++ +D FP+T H+EC LL Sbjct: 312 SAGTLNRDLDMLEARGYRCRKIIPYDFFPWTDHVECLALL 351 >gi|145628105|ref|ZP_01783906.1| 23S rRNA m(5)U747-methyltransferase [Haemophilus influenzae 22.1-21] gi|145638219|ref|ZP_01793829.1| 23S rRNA m(5)U747-methyltransferase [Haemophilus influenzae PittII] gi|144979880|gb|EDJ89539.1| 23S rRNA m(5)U747-methyltransferase [Haemophilus influenzae 22.1-21] gi|145272548|gb|EDK12455.1| 23S rRNA m(5)U747-methyltransferase [Haemophilus influenzae PittII] gi|309751374|gb|ADO81358.1| 23S rRNA m(5)U747-methyltransferase [Haemophilus influenzae R2866] Length = 391 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 51/160 (31%), Positives = 75/160 (46%), Gaps = 18/160 (11%) Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI-AANHVNNVKIVRMSSKEFT 270 +L +L+CG G F L A+ I +E + I AA+H + KI+ + F Sbjct: 241 NLWDLFCGVGGFGLHCAKALQEKWGKPIKLTGIEISSSAILAASH--SAKILGLEHVNFQ 298 Query: 271 Q---AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD-DATVGMVQAYPH-ILYISCNP 325 A E + D+ + V+PPR G+ + + + Q PH ILY SCN Sbjct: 299 SLDAASLIENKNENKPDL---------VIVNPPRRGIGKELSEFLNQIQPHFILYSSCNA 349 Query: 326 DSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 ++ +DL L T + ++ LFD FP T H E VLL RK Sbjct: 350 MTMGKDLQHL-TCYKPLKIQLFDMFPQTSHYEVLVLLERK 388 >gi|83309427|ref|YP_419691.1| SAM-dependent methyltransferase related to tRNA (uracil-5-)-methyltransferase [Magnetospirillum magneticum AMB-1] gi|82944268|dbj|BAE49132.1| SAM-dependent methyltransferase related to tRNA (uracil-5-)-methyltransferase [Magnetospirillum magneticum AMB-1] Length = 438 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 55/180 (30%), Positives = 80/180 (44%), Gaps = 25/180 (13%) Query: 185 NSFTQPNAGINVHMLEWVLAAT-KGIQGDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKP 242 F QP G + + E +L+AT K + + +LY G G+FSL LA R R Sbjct: 270 GGFLQPTRGGELAIAEAILSATPKDVP--VADLYSGCGSFSLPLALRGPVR--------- 318 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302 +VE + +AA + E RR + LK F+ I +DPPR+ Sbjct: 319 AVEGEQGPVAALEAAARAASLPLTAEVRDLARRPLAAHELKG-------FRAIVLDPPRA 371 Query: 303 GLDDATVGMVQAYPH----ILYISCNPDSLCRDLSILSTTH-TIERLALFDQFPYTRHME 357 G + + P I +SCNP +L RDL L I+R+ DQFP++ H+E Sbjct: 372 GAAAQAAELARPSPGGPTTIAMVSCNPATLARDLRTLCDGGWRIKRVVPIDQFPWSAHLE 431 >gi|312113130|ref|YP_004010726.1| (uracil-5)-methyltransferase [Rhodomicrobium vannielii ATCC 17100] gi|311218259|gb|ADP69627.1| (Uracil-5)-methyltransferase [Rhodomicrobium vannielii ATCC 17100] Length = 443 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 49/175 (28%), Positives = 82/175 (46%), Gaps = 17/175 (9%) Query: 194 INVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAA 253 + +E + AA G +G + +L+ G G F+ +A + SV A N AA Sbjct: 272 MGAFTVEALDAAGAG-KGPVCDLFAGLGAFTFPVA-----------TRASVTAYEDNAAA 319 Query: 254 NHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ 313 + + +A+RR+ + L ++++ F +DPPR G + + Q Sbjct: 320 VAALSAAAKESKGLKPVKAIRRDLFRSPLGFQELNA--FAAAVLDPPREGAEAQARALAQ 377 Query: 314 AY-PHILYISCNPDSLCRDLSILSTTH-TIERLALFDQFPYTRHMECGVLLVRKP 366 + P + +SCNP + RD +IL+ + RLA FDQF Y+ H+E L R+P Sbjct: 378 SKIPAAVMLSCNPATFARDAAILAEGGFELTRLAAFDQFRYSAHVEVAALF-RRP 431 >gi|332017236|gb|EGI58019.1| tRNA (uracil-5-)-methyltransferase-like protein A [Acromyrmex echinatior] Length = 562 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 52/213 (24%), Positives = 91/213 (42%), Gaps = 28/213 (13%) Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNA-GINVHMLEWVLAATKGIQGDLLELYCGNGNF 223 +Y++E L + +R +F Q N G V + A + LL++ CG G Sbjct: 359 EYIEETLL----GMKFRVSPQAFFQVNTLGAEVLYKAAIDLAEPTMDTALLDVCCGTGTI 414 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 L +++ VL VEI +++ A+ N N + N + +++ + R Sbjct: 415 GLCFSKYCGEVLGVEIIPDAIQDAKENAVKNEIKNCEFFVGKAEDILLPI-----IQRTT 469 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDA---TVGMVQAYPHILYISCNPDSLCRDLSILSTTHT 340 +I T VDPPR+GL T+ + ++YISC+P + ++L L+ + Sbjct: 470 KSNI------TAIVDPPRAGLHQKALLTLRKSKKLNRLVYISCDPRAAMKNLIDLARPSS 523 Query: 341 IERLA---------LFDQFPYTRHMECGVLLVR 364 + L D FP+T+H E + L R Sbjct: 524 KQYLGEPLVPVKAIAVDMFPHTKHCELILCLER 556 >gi|322383954|ref|ZP_08057684.1| RNA methyltransferase-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321151431|gb|EFX44618.1| RNA methyltransferase-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 536 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 49/184 (26%), Positives = 84/184 (45%), Gaps = 18/184 (9%) Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 +F Q N VH+ ++V A + GD +++ YCG G L LA V +EI + Sbjct: 363 AFFQLNPSQTVHLYDYVKEAA-ALTGDELVVDAYCGTGTIGLWLAPLACEVRGIEIIDDA 421 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 V+ AR N + + N + +++ RE + +D +G Sbjct: 422 VQDARRNAERSGLGNARFYTGRAEKLLPQWVREGVRPDVVVVDPPR------------TG 469 Query: 304 LDDATVGMVQAY--PHILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHMECGV 360 D A + + A P ++Y+SCNP +L +D ++L ++ E + D FP T H+EC + Sbjct: 470 CDAALLRAILAAKPPRLVYVSCNPSTLAKDCRTLLGGGYSAEWVQPVDMFPQTAHVECVI 529 Query: 361 LLVR 364 + R Sbjct: 530 RIQR 533 >gi|306845067|ref|ZP_07477647.1| 23S ribosomal RNA uracil-5-methyltransferase rumA [Brucella sp. BO1] gi|306274482|gb|EFM56277.1| 23S ribosomal RNA uracil-5-methyltransferase rumA [Brucella sp. BO1] Length = 415 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 50/182 (27%), Positives = 84/182 (46%), Gaps = 16/182 (8%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 F Q A M VLA G + +L+CG G F+L +A V AVE ++ Sbjct: 245 GCFLQATAEAEETMAALVLAHL-GKARRVADLFCGVGTFALRIAEK-SAVHAVENDAAAL 302 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 A + HV +K V + ++ + +E + + DPPR+G Sbjct: 303 AALDRGV--RHVQGLKPVSIERRDLFRRPLMPKEL----------LPYNAVVFDPPRAGA 350 Query: 305 DDATVGMVQA-YPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLL 362 ++ + + ++ ++ ISCNP +L RDL+IL + IER+ DQF ++ H+E +L Sbjct: 351 EEQALELAKSKVEKVVAISCNPVTLARDLAILQKGGYRIERVTPIDQFLWSAHVEAVAVL 410 Query: 363 VR 364 + Sbjct: 411 TK 412 >gi|163842718|ref|YP_001627122.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Brucella suis ATCC 23445] gi|163673441|gb|ABY37552.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Brucella suis ATCC 23445] Length = 415 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 50/182 (27%), Positives = 84/182 (46%), Gaps = 16/182 (8%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 F Q A M VLA G + +L+CG G F+L +A V AVE ++ Sbjct: 245 GCFLQATAEAEETMAALVLAHL-GKARRVADLFCGVGTFALRIAEK-SAVHAVENDAAAL 302 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 A + HV +K V + ++ + +E + + DPPR+G Sbjct: 303 AALDRGV--RHVQGLKPVSIERRDLFRRPLMPKEL----------LPYNAVVFDPPRAGA 350 Query: 305 DDATVGMVQA-YPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLL 362 ++ + + ++ ++ ISCNP +L RDL+IL + IER+ DQF ++ H+E +L Sbjct: 351 EEQALELAKSKVEKVVAISCNPVTLARDLAILQKGGYRIERVTPIDQFLWSAHVEAVAVL 410 Query: 363 VR 364 + Sbjct: 411 TK 412 >gi|260431992|ref|ZP_05785963.1| tRNA (Uracil-5-)-methyltransferase superfamily protein [Silicibacter lacuscaerulensis ITI-1157] gi|260415820|gb|EEX09079.1| tRNA (Uracil-5-)-methyltransferase superfamily protein [Silicibacter lacuscaerulensis ITI-1157] Length = 409 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 43/147 (29%), Positives = 67/147 (45%), Gaps = 15/147 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++L+ G G FSL LA+ + V AVE A A+ + S Q Sbjct: 265 VVDLFAGCGTFSLPLAQRAE-VHAVEGA------------ADMTRALDQGWRKSTGLKQV 311 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY-PHILYISCNPDSLCRD 331 R+ R + RF + +DPPR+G + + +A P I Y+SCNP + RD Sbjct: 312 TTEARDLFRRPLMPDELRRFDAVVLDPPRAGAEAQVAELAEARRPVIAYVSCNPVTFARD 371 Query: 332 LSIL-STTHTIERLALFDQFPYTRHME 357 IL + +E + + DQF ++ H E Sbjct: 372 AKILVQEGYALEWVQVVDQFRWSSHSE 398 >gi|113868344|ref|YP_726833.1| 23S rRNA 5-methyluridine methyltransferase [Ralstonia eutropha H16] gi|122946761|sp|Q0K956|RUMA_CUPNH RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|113527120|emb|CAJ93465.1| tRNA (Uracil-5-)-methyltransferase [Ralstonia eutropha H16] Length = 441 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 56/183 (30%), Positives = 77/183 (42%), Gaps = 24/183 (13%) Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 FTQ N IN ++ L D LL+L+CG GNF+L LA V+ +E E Sbjct: 263 FTQVNHQINRVLIGRALRLLDAQPQDRLLDLFCGIGNFTLPLATQGKSVMGIE----GSE 318 Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY-RFKTIFVDPPRSG- 303 A AN N R EF R + DI + RF VDPPR G Sbjct: 319 ALTTRALANAEYNGLAAR---TEFAC-----RNLFEVTAEDIAALGRFDRWLVDPPREGA 370 Query: 304 ------LDDATVGMVQAYPH-ILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTR 354 L + P I+Y+SC+P +L RD +L + + + + FP+T Sbjct: 371 LAVCKALGELAQQGSNVLPQRIVYVSCSPATLARDAGLLVHGAGYRLAGAGVVNMFPHTS 430 Query: 355 HME 357 H+E Sbjct: 431 HVE 433 >gi|296191372|ref|XP_002743598.1| PREDICTED: tRNA (uracil-5-)-methyltransferase homolog A [Callithrix jacchus] Length = 621 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 47/170 (27%), Positives = 78/170 (45%), Gaps = 25/170 (14%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +L++ CG G +L+L + RV+ VE+ +VE AR N N ++NV+ +++ A Sbjct: 432 VLDVCCGTGTIALLLFQKVKRVIGVELCPEAVEDARVNAQDNELSNVEFHCGRAEDLVPA 491 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH---ILYISCNPDS-- 327 + +RL + +DPPR+GL + ++ + +LY+SCNP + Sbjct: 492 L-----VSRLASQHL------VAILDPPRAGLHSKVILAIRRAENLRRLLYVSCNPRAAM 540 Query: 328 -----LCRDLS--ILSTTHTIERLALFDQFPYTRHMECGVLL--VRKPSG 368 LCR S + + D FP T H E +L V P+G Sbjct: 541 GNFVDLCRAPSNRVKGIPFQPVKAVAVDLFPQTPHCEMLILFERVEHPNG 590 >gi|94497587|ref|ZP_01304156.1| (Uracil-5)-methyltransferase [Sphingomonas sp. SKA58] gi|94423004|gb|EAT08036.1| (Uracil-5)-methyltransferase [Sphingomonas sp. SKA58] Length = 405 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 50/176 (28%), Positives = 77/176 (43%), Gaps = 22/176 (12%) Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP--S 243 SF Q + + V AA G + +L+CG G F+L A +P + Sbjct: 241 SFLQATPDGEAALTDAVRAALPAT-GAVADLFCGLGTFAL----------AAGEGRPVYA 289 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 EAAR I + + R + + RR L RF + +DPPR+G Sbjct: 290 AEAARDVILQLKMAAGRAQRRLAADHRDLFRRPLTPEELN-------RFAAVILDPPRAG 342 Query: 304 LDDATVGMVQA-YPHILYISCNPDSLCRDLSILSTT-HTIERLALFDQFPYTRHME 357 + + +VQA P I Y+SCNP S RD + L+ + +E + QF ++ H+E Sbjct: 343 AREQVLQLVQADVPTIAYVSCNPASFARDAAHLTAAGYRLESVRPVGQFRWSTHVE 398 >gi|311271117|ref|XP_001927820.2| PREDICTED: tRNA (uracil-5-)-methyltransferase homolog A-like [Sus scrofa] Length = 621 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 45/164 (27%), Positives = 75/164 (45%), Gaps = 23/164 (14%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +L++ CG G L LAR RV+ VE+++ +V+ AR N N ++NV+ +++ Sbjct: 432 VLDVCCGTGTIGLALARKVKRVVGVELSQEAVDDARVNALDNELSNVEFHCGRAEDLVPP 491 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH---ILYISCNPDS-- 327 + +RL + +DPPR+GL + V+ + +LY+SC+P + Sbjct: 492 L-----VSRLASQQL------VAILDPPRAGLHSKVILAVRRAENLRRLLYVSCSPRAAM 540 Query: 328 -----LCRDLS--ILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 LCR S + + D FP T H E +L R Sbjct: 541 GNFVDLCRAPSNRVKGMPFRPVKAVAVDLFPQTPHCEMLILFER 584 >gi|162447304|ref|YP_001620436.1| tRNA (uracil-5-)-methyltransferase, SAM dependent [Acholeplasma laidlawii PG-8A] gi|161985411|gb|ABX81060.1| tRNA (uracil-5-)-methyltransferase, SAM dependent [Acholeplasma laidlawii PG-8A] Length = 430 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 47/184 (25%), Positives = 87/184 (47%), Gaps = 25/184 (13%) Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPS 243 SF Q N + + M + + T+ +++ Y G + + ++ D +V A+E S Sbjct: 268 SFFQVNKDVAILMYDEIKKLTQN--HTVIDAYAGMAS----IGQYIDAKKVYAIESNLDS 321 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 + A+ + N V++V+++ +E +A + + I DPPRSG Sbjct: 322 IIQAKKILKVNQVDHVELIHGQVEEKLEAYIKHAD---------------AIVFDPPRSG 366 Query: 304 LDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVL 361 L ++ + +V+ I+Y+SC+ SL RD++ L + I+++ FP T HME L Sbjct: 367 LTESIIELVKLNQIKTIVYVSCDLKSLARDINGLKDLYDIKKIIPVRMFPSTIHMETITL 426 Query: 362 LVRK 365 L K Sbjct: 427 LSLK 430 >gi|313902590|ref|ZP_07835990.1| RNA methyltransferase, TrmA family [Thermaerobacter subterraneus DSM 13965] gi|313467156|gb|EFR62670.1| RNA methyltransferase, TrmA family [Thermaerobacter subterraneus DSM 13965] Length = 631 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 41/155 (26%), Positives = 67/155 (43%), Gaps = 24/155 (15%) Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292 RV A+E+ + AR N N + V+ + + ++ + E + + Sbjct: 473 RVTAIEVVSEATADARVNAERNGLQGVEFITGAVEDVLPRLAAESQGGAGGGDGAAARGG 532 Query: 293 KT--IFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTTHT-------- 340 + I +DPPR G + A + P I+Y+SCNP +L RDL++L T + Sbjct: 533 RPDGILLDPPRKGCEPAALAACLELAPPRIVYVSCNPVTLARDLAVLCDTGSPAAPAVHG 592 Query: 341 ------------IERLALFDQFPYTRHMECGVLLV 363 +E + D FP+T H+EC LLV Sbjct: 593 SGRRRGRRARYRLEAVQPVDMFPHTAHVECAALLV 627 >gi|323526136|ref|YP_004228289.1| TrmA family RNA methyltransferase [Burkholderia sp. CCGE1001] gi|323383138|gb|ADX55229.1| RNA methyltransferase, TrmA family [Burkholderia sp. CCGE1001] Length = 474 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 54/189 (28%), Positives = 82/189 (43%), Gaps = 22/189 (11%) Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 FTQ N IN ++ L + D +L+L+CG GNF+L LAR V+ +E ++ Sbjct: 295 FTQVNHAINRVLVSRALRLLAPARTDRVLDLFCGIGNFTLPLARIAREVVGIEGSEVLTS 354 Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG-- 303 A N N V F E + L+ + F +DPPR G Sbjct: 355 RALANAELNGV-------AGHTSFACRNLFEVTADDLRALG----HFDKFLIDPPREGAL 403 Query: 304 -LDDATVGMVQA----YP-HILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTRH 355 + A + Q+ P I+Y+SCNP +L RD +L + + + + FP+T H Sbjct: 404 AVSKALAEIAQSGNGPLPRRIVYVSCNPSTLARDSGLLVHEAGYRLVGAGVVNMFPHTSH 463 Query: 356 MECGVLLVR 364 +E L R Sbjct: 464 VESIALFER 472 >gi|291408093|ref|XP_002720421.1| PREDICTED: TRM2 tRNA methyltransferase 2 homolog B isoform 2 [Oryctolagus cuniculus] Length = 459 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 48/197 (24%), Positives = 84/197 (42%), Gaps = 28/197 (14%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 ++F Q N ML + G+ + LL++ CG G L LA+H +VL +E+ + Sbjct: 274 DAFFQVNTA-GAEMLYQTVGELSGVNANTILLDICCGTGAIGLSLAQHASQVLGIELVEQ 332 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302 +VE AR+ A N + N + +++ + + +E + V+PPR+ Sbjct: 333 AVEDARWTAAFNGITNCEFHAGRAEKILPWLLKSKE----------GVQPVVAVVNPPRA 382 Query: 303 GLDDATVGMV---QAYPHILYISC--------NPDSLC----RDLSILSTTHTIERLALF 347 GL V + +A ++++SC N LC +L + + Sbjct: 383 GLHHRVVQAIRNCRAIRTLVFVSCKLHGETTRNITELCCPPDSAKKLLGEPFVLRQAVPV 442 Query: 348 DQFPYTRHMECGVLLVR 364 D FP+T H E +L R Sbjct: 443 DLFPHTAHCELALLCTR 459 >gi|306842277|ref|ZP_07474939.1| 23S ribosomal RNA uracil-5-methyltransferase [Brucella sp. BO2] gi|306287585|gb|EFM59036.1| 23S ribosomal RNA uracil-5-methyltransferase [Brucella sp. BO2] Length = 415 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 50/182 (27%), Positives = 84/182 (46%), Gaps = 16/182 (8%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 F Q A M VLA G + +L+CG G F+L +A V AVE ++ Sbjct: 245 GCFLQATAEAEETMAALVLAHL-GKARRVADLFCGVGTFALRIAEK-SAVHAVENDAAAL 302 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 A + HV +K V + ++ + +E + + DPPR+G Sbjct: 303 AALDRGV--RHVQGLKPVSIERRDLFRRPLMPKEL----------LPYNAVVFDPPRAGA 350 Query: 305 DDATVGMVQA-YPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLL 362 ++ + + ++ ++ ISCNP +L RDL+IL + IER+ DQF ++ H+E +L Sbjct: 351 EEQALELAKSKVEKVVAISCNPVTLARDLAILQKGGYRIERVTPIDQFLWSAHVEAVAVL 410 Query: 363 VR 364 + Sbjct: 411 TK 412 >gi|283782980|ref|YP_003373734.1| TRAM domain protein [Gardnerella vaginalis 409-05] gi|283441528|gb|ADB13994.1| TRAM domain protein [Gardnerella vaginalis 409-05] Length = 471 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 57/223 (25%), Positives = 94/223 (42%), Gaps = 36/223 (16%) Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD------LLELYCGNGNFSLVLAR 229 RT Y F Q + H++ +VL + G L +LY G+G F++ LA Sbjct: 252 RTFDYDVDARGFWQIHRAAPEHLVNYVLGLVRSALGGRSKNTVLWDLYSGSGLFTIPLAT 311 Query: 230 ----------HFD-----------RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268 +D RVL++E A +V+ AR NI ++ +V + Sbjct: 312 LANVGGDSYGAYDAVGAFGAAEPARVLSIEGAPIAVKNARRNIGRAGLSR-DVVEALEGD 370 Query: 269 FTQAMRREREFNRLKDIDIHSYRFK---TIFVDPPRSGLDDATVGMV--QAYPHILYISC 323 Q + + F K I RF + +DPPR+G + ++Y++C Sbjct: 371 VAQTLESQ-VFKASKSSKI-VRRFAHPDVVVLDPPRAGAKAQVCKQIAKSGARSVVYVAC 428 Query: 324 NPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVRK 365 +P SL RD+ S ++++ L +FD +P T H E LL + Sbjct: 429 DPTSLARDVGTFSELGYSVQSLRVFDIYPNTHHTESVALLYKS 471 >gi|148990104|ref|ZP_01821344.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae SP6-BS73] gi|147924498|gb|EDK75586.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae SP6-BS73] Length = 120 Score = 58.2 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 30/78 (38%), Positives = 43/78 (55%), Gaps = 2/78 (2%) Query: 290 YRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTTHTIERLALF 347 YR + VDPPR+GLDD + + Y ++YISCN +L RDL L + + + Sbjct: 42 YRADALIVDPPRTGLDDKLLDTILTYVPEKMVYISCNVSTLARDLVRLVEVYDLHYIQSV 101 Query: 348 DQFPYTRHMECGVLLVRK 365 D FP+T E V L++K Sbjct: 102 DMFPHTARTEAVVKLIKK 119 >gi|39934025|ref|NP_946301.1| putative RNA methyltransferase [Rhodopseudomonas palustris CGA009] gi|51316644|sp|Q6NB80|Y948_RHOPA RecName: Full=Uncharacterized RNA methyltransferase RPA0948 gi|39647873|emb|CAE26392.1| possible hypothetical RNA methyltransferase [Rhodopseudomonas palustris CGA009] Length = 412 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 50/175 (28%), Positives = 79/175 (45%), Gaps = 16/175 (9%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 +F Q A + L + A G + +L+CG G F+L LA RV A + P+V Sbjct: 245 GAFLQATA-LGEQTLAELAMAKLGRAKQVADLFCGVGPFALRLAEKA-RVFACDSDAPAV 302 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 A + AA + +K V+ +++ RR L+D F + DPPR G Sbjct: 303 TALQK--AAPATSGLKPVKAEARDL---FRRPLAPPELRD-------FDAVLFDPPRQGA 350 Query: 305 DDATVGMVQA-YPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHME 357 + + P ++ +SCN + RD +L + +ER+ DQF YT H+E Sbjct: 351 QAQAAQLAASRVPLVIAVSCNATTFARDAKLLIDGGYKLERVIPVDQFKYTPHVE 405 >gi|62289423|ref|YP_221216.1| RNA methyltransferase [Brucella abortus bv. 1 str. 9-941] gi|82699350|ref|YP_413924.1| SAM-binding domain-containing protein [Brucella melitensis biovar Abortus 2308] gi|189023674|ref|YP_001934442.1| SAM (and some other nucleotide) binding motif [Brucella abortus S19] gi|237814911|ref|ZP_04593909.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Brucella abortus str. 2308 A] gi|254688736|ref|ZP_05151990.1| SAM (and some other nucleotide) binding motif [Brucella abortus bv. 6 str. 870] gi|254696864|ref|ZP_05158692.1| SAM (and some other nucleotide) binding motif [Brucella abortus bv. 2 str. 86/8/59] gi|254729769|ref|ZP_05188347.1| SAM (and some other nucleotide) binding motif [Brucella abortus bv. 4 str. 292] gi|256256983|ref|ZP_05462519.1| SAM (and some other nucleotide) binding motif [Brucella abortus bv. 9 str. C68] gi|260545825|ref|ZP_05821566.1| SAM binding domain-containing protein [Brucella abortus NCTC 8038] gi|260754215|ref|ZP_05866563.1| tRNA (Uracil-5-)-methyltransferase [Brucella abortus bv. 6 str. 870] gi|260757435|ref|ZP_05869783.1| tRNA (Uracil-5-)-methyltransferase [Brucella abortus bv. 4 str. 292] gi|260761260|ref|ZP_05873603.1| tRNA (Uracil-5-)-methyltransferase [Brucella abortus bv. 2 str. 86/8/59] gi|260883240|ref|ZP_05894854.1| RNA methyltransferase [Brucella abortus bv. 9 str. C68] gi|297247836|ref|ZP_06931554.1| TrmA family RNA methyltransferase [Brucella abortus bv. 5 str. B3196] gi|62195555|gb|AAX73855.1| RNA methyltransferase hypothetical, TrmA family [Brucella abortus bv. 1 str. 9-941] gi|82615451|emb|CAJ10420.1| SAM (and some other nucleotide) binding motif [Brucella melitensis biovar Abortus 2308] gi|189019246|gb|ACD71968.1| SAM (and some other nucleotide) binding motif [Brucella abortus S19] gi|237789748|gb|EEP63958.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Brucella abortus str. 2308 A] gi|260097232|gb|EEW81107.1| SAM binding domain-containing protein [Brucella abortus NCTC 8038] gi|260667753|gb|EEX54693.1| tRNA (Uracil-5-)-methyltransferase [Brucella abortus bv. 4 str. 292] gi|260671692|gb|EEX58513.1| tRNA (Uracil-5-)-methyltransferase [Brucella abortus bv. 2 str. 86/8/59] gi|260674323|gb|EEX61144.1| tRNA (Uracil-5-)-methyltransferase [Brucella abortus bv. 6 str. 870] gi|260872768|gb|EEX79837.1| RNA methyltransferase [Brucella abortus bv. 9 str. C68] gi|297175005|gb|EFH34352.1| TrmA family RNA methyltransferase [Brucella abortus bv. 5 str. B3196] Length = 415 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 50/182 (27%), Positives = 84/182 (46%), Gaps = 16/182 (8%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 F Q A M VLA G + +L+CG G F+L +A V AVE ++ Sbjct: 245 GCFLQATAEAEETMAALVLAHL-GKARRVADLFCGVGTFALRIAEK-SAVHAVENDAAAL 302 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 A + HV +K V + ++ + +E + + DPPR+G Sbjct: 303 AALDRGV--RHVQGLKPVSIERRDLFRRPLMPKEL----------LPYNAVVFDPPRAGA 350 Query: 305 DDATVGMVQA-YPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLL 362 ++ + + ++ ++ ISCNP +L RDL+IL + IER+ DQF ++ H+E +L Sbjct: 351 EEQALELAKSKVEKVVAISCNPVTLARDLAILQKGGYRIERVTPIDQFLWSAHVEAVAVL 410 Query: 363 VR 364 + Sbjct: 411 TK 412 >gi|23501339|ref|NP_697466.1| RNA methyltransferase [Brucella suis 1330] gi|161618410|ref|YP_001592297.1| 23S ribosomal RNA (uracil-5-)-methyltransferase rumA [Brucella canis ATCC 23365] gi|225626946|ref|ZP_03784985.1| tRNA (Uracil-5-)-methyltransferase [Brucella ceti str. Cudo] gi|254701243|ref|ZP_05163071.1| 23S ribosomal RNA (uracil-5-)-methyltransferase rumA [Brucella suis bv. 5 str. 513] gi|254703790|ref|ZP_05165618.1| 23S ribosomal RNA (uracil-5-)-methyltransferase rumA [Brucella suis bv. 3 str. 686] gi|254709586|ref|ZP_05171397.1| 23S ribosomal RNA (uracil-5-)-methyltransferase rumA [Brucella pinnipedialis B2/94] gi|254712998|ref|ZP_05174809.1| 23S ribosomal RNA (uracil-5-)-methyltransferase rumA [Brucella ceti M644/93/1] gi|254716648|ref|ZP_05178459.1| 23S ribosomal RNA (uracil-5-)-methyltransferase rumA [Brucella ceti M13/05/1] gi|256031078|ref|ZP_05444692.1| 23S ribosomal RNA (uracil-5-)-methyltransferase rumA [Brucella pinnipedialis M292/94/1] gi|256060572|ref|ZP_05450740.1| 23S ribosomal RNA (uracil-5-)-methyltransferase rumA [Brucella neotomae 5K33] gi|256159142|ref|ZP_05456963.1| 23S ribosomal RNA (uracil-5-)-methyltransferase rumA [Brucella ceti M490/95/1] gi|256254481|ref|ZP_05460017.1| 23S ribosomal RNA (uracil-5-)-methyltransferase rumA [Brucella ceti B1/94] gi|256368893|ref|YP_003106399.1| RNA methyltransferase putative, TrmA family [Brucella microti CCM 4915] gi|260168209|ref|ZP_05755020.1| RNA methyltransferase putative, TrmA family protein [Brucella sp. F5/99] gi|260566957|ref|ZP_05837427.1| SAM binding domain-containing protein [Brucella suis bv. 4 str. 40] gi|261218449|ref|ZP_05932730.1| hypothetical protein BAJG_01894 [Brucella ceti M13/05/1] gi|261221654|ref|ZP_05935935.1| RNA methyltransferase [Brucella ceti B1/94] gi|261317114|ref|ZP_05956311.1| hypothetical protein BAHG_00763 [Brucella pinnipedialis B2/94] gi|261320701|ref|ZP_05959898.1| hypothetical protein BAIG_01275 [Brucella ceti M644/93/1] gi|261324567|ref|ZP_05963764.1| RNA methyltransferase [Brucella neotomae 5K33] gi|261751782|ref|ZP_05995491.1| tRNA (Uracil-5-)-methyltransferase [Brucella suis bv. 5 str. 513] gi|261754437|ref|ZP_05998146.1| tRNA (Uracil-5-)-methyltransferase [Brucella suis bv. 3 str. 686] gi|261757670|ref|ZP_06001379.1| SAM binding domain-containing protein [Brucella sp. F5/99] gi|265988151|ref|ZP_06100708.1| hypothetical protein BALG_00728 [Brucella pinnipedialis M292/94/1] gi|265997616|ref|ZP_06110173.1| hypothetical protein BAPG_00737 [Brucella ceti M490/95/1] gi|50401590|sp|Q8G290|Y438_BRUSU RecName: Full=Uncharacterized RNA methyltransferase BR0438 gi|23347230|gb|AAN29381.1| RNA methyltransferase putative, TrmA family [Brucella suis 1330] gi|161335221|gb|ABX61526.1| 23S ribosomal RNA (uracil-5-)-methyltransferase rumA [Brucella canis ATCC 23365] gi|225618603|gb|EEH15646.1| tRNA (Uracil-5-)-methyltransferase [Brucella ceti str. Cudo] gi|255999051|gb|ACU47450.1| RNA methyltransferase putative, TrmA family [Brucella microti CCM 4915] gi|260156475|gb|EEW91555.1| SAM binding domain-containing protein [Brucella suis bv. 4 str. 40] gi|260920238|gb|EEX86891.1| RNA methyltransferase [Brucella ceti B1/94] gi|260923538|gb|EEX90106.1| hypothetical protein BAJG_01894 [Brucella ceti M13/05/1] gi|261293391|gb|EEX96887.1| hypothetical protein BAIG_01275 [Brucella ceti M644/93/1] gi|261296337|gb|EEX99833.1| hypothetical protein BAHG_00763 [Brucella pinnipedialis B2/94] gi|261300547|gb|EEY04044.1| RNA methyltransferase [Brucella neotomae 5K33] gi|261737654|gb|EEY25650.1| SAM binding domain-containing protein [Brucella sp. F5/99] gi|261741535|gb|EEY29461.1| tRNA (Uracil-5-)-methyltransferase [Brucella suis bv. 5 str. 513] gi|261744190|gb|EEY32116.1| tRNA (Uracil-5-)-methyltransferase [Brucella suis bv. 3 str. 686] gi|262552084|gb|EEZ08074.1| hypothetical protein BAPG_00737 [Brucella ceti M490/95/1] gi|264660348|gb|EEZ30609.1| hypothetical protein BALG_00728 [Brucella pinnipedialis M292/94/1] Length = 415 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 50/182 (27%), Positives = 84/182 (46%), Gaps = 16/182 (8%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 F Q A M VLA G + +L+CG G F+L +A V AVE ++ Sbjct: 245 GCFLQATAEAEETMAALVLAHL-GKARRVADLFCGVGTFALRIAEK-SAVHAVENDAAAL 302 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 A + HV +K V + ++ + +E + + DPPR+G Sbjct: 303 AALDRGV--RHVQGLKPVSIERRDLFRRPLMPKEL----------LPYNAVVFDPPRAGA 350 Query: 305 DDATVGMVQA-YPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLL 362 ++ + + ++ ++ ISCNP +L RDL+IL + IER+ DQF ++ H+E +L Sbjct: 351 EEQALELAKSKVEKVVAISCNPVTLARDLAILQKGGYRIERVTPIDQFLWSAHVEAVAVL 410 Query: 363 VR 364 + Sbjct: 411 TK 412 >gi|254707833|ref|ZP_05169661.1| 23S ribosomal RNA (uracil-5-)-methyltransferase rumA [Brucella pinnipedialis M163/99/10] gi|261315320|ref|ZP_05954517.1| hypothetical protein BAGG_02480 [Brucella pinnipedialis M163/99/10] gi|261304346|gb|EEY07843.1| hypothetical protein BAGG_02480 [Brucella pinnipedialis M163/99/10] Length = 414 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 50/182 (27%), Positives = 84/182 (46%), Gaps = 16/182 (8%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 F Q A M VLA G + +L+CG G F+L +A V AVE ++ Sbjct: 245 GCFLQATAEAEETMAALVLAHL-GKARRVADLFCGVGTFALRIAEK-SAVHAVENDAAAL 302 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 A + HV +K V + ++ + +E + + DPPR+G Sbjct: 303 AALDRGV--RHVQGLKPVSIERRDLFRRPLMPKEL----------LPYNAVVFDPPRAGA 350 Query: 305 DDATVGMVQA-YPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLL 362 ++ + + ++ ++ ISCNP +L RDL+IL + IER+ DQF ++ H+E +L Sbjct: 351 EEQALELAKSKVEKVVAISCNPVTLARDLAILQKGGYRIERVTPIDQFLWSAHVEAVAVL 410 Query: 363 VR 364 + Sbjct: 411 TK 412 >gi|218294965|ref|ZP_03495819.1| (Uracil-5)-methyltransferase [Thermus aquaticus Y51MC23] gi|218244873|gb|EED11397.1| (Uracil-5)-methyltransferase [Thermus aquaticus Y51MC23] Length = 402 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 51/159 (32%), Positives = 82/159 (51%), Gaps = 22/159 (13%) Query: 209 IQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266 +QG LE+Y G+G SL+LA F V+AVEI+K +V + A V NV+ R + Sbjct: 258 VQGGERALEVYAGSGLLSLLLAPRFQEVVAVEISKEAVRRGERDKARLRVENVRFHRGDA 317 Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCN 324 +E R F RF + +DPPR+GL + ++++ P +LYI+C+ Sbjct: 318 RE-------ARRFG----------RFDLVVLDPPRAGLSEEVRAYLLESRPKEVLYIACD 360 Query: 325 PDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVLL 362 P + RD+ ++ + + +D FP+T H+E LL Sbjct: 361 PATWARDVGELVRGGYELAFARPYDFFPFTHHVEVLSLL 399 >gi|281206857|gb|EFA81041.1| hypothetical protein PPL_05876 [Polysphondylium pallidum PN500] Length = 666 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 51/198 (25%), Positives = 89/198 (44%), Gaps = 27/198 (13%) Query: 185 NSFTQPNA----GINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240 N+F Q N+ + + EW + I +L++ CG G ++ V +E+A Sbjct: 427 NAFFQVNSKAAESLFSKVTEWAGVNERSI---VLDVCCGTGTIGQCISDKARHVYGLEMA 483 Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR--EREFNRLKDIDIHSYRFKTIFVD 298 +V AR N N + N+ + +++ T + + + + KD +I VD Sbjct: 484 PDAVADARVNAERNGIKNIDYIVGKAEDTTDKLLQMIHQNYRDAKDGEIIG------IVD 537 Query: 299 PPRSGLDDATVG---MVQAYPHILYISCNPDSLCRDLSIL--STTHTIE-------RLAL 346 PPR+GL + ++ ++Y+SCN +SL D + L S T+T++ + Sbjct: 538 PPRAGLHQNVIKSLRTLETMKKLVYVSCNQNSLIVDAARLCKSITNTMKGTPFRPVKAIA 597 Query: 347 FDQFPYTRHMECGVLLVR 364 D FP+T H E VL R Sbjct: 598 VDLFPHTEHCEVVVLFER 615 >gi|209522218|ref|ZP_03270855.1| RNA methyltransferase, TrmA family [Burkholderia sp. H160] gi|209497347|gb|EDZ97565.1| RNA methyltransferase, TrmA family [Burkholderia sp. H160] Length = 476 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 53/189 (28%), Positives = 79/189 (41%), Gaps = 22/189 (11%) Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 FTQ N IN ++ L + D +L+L+CG GNF+L LAR V+ +E ++ + Sbjct: 298 FTQVNHAINRVLVSRALRLLAPARTDRVLDLFCGIGNFTLPLARISREVVGIEGSEVLTQ 357 Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG-- 303 A N N V F E + L+ + F VDPPR G Sbjct: 358 RALANAELNGV-------AGHTSFASRNLFEVTADDLRALG----HFDKFLVDPPREGAL 406 Query: 304 ------LDDATVGMVQAYPHILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTRH 355 + A G I+Y+SC P +L RD +L + + + + FP+T H Sbjct: 407 AIAKALAEIAQSGNGPLPKRIVYVSCAPATLARDAGLLVHEAGYRLVGAGVVNMFPHTSH 466 Query: 356 MECGVLLVR 364 +E L R Sbjct: 467 VESIALFER 475 >gi|330994042|ref|ZP_08317972.1| Putative RNA methyltransferase [Gluconacetobacter sp. SXCC-1] gi|329758988|gb|EGG75502.1| Putative RNA methyltransferase [Gluconacetobacter sp. SXCC-1] Length = 411 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 45/178 (25%), Positives = 78/178 (43%), Gaps = 21/178 (11%) Query: 184 ENSFTQPNAGINVHMLEWVLAAT--KGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241 +F QP + + VLA KG++ ++ELY G G S LA +V A E + Sbjct: 237 PGAFLQPAREGEEAIRQAVLAGLPRKGLKAGIIELYAGCGTLSFALATQA-KVHAYEGDR 295 Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301 P+ + + T+ + R+ NR + + + +DPP Sbjct: 296 PAFACLK----------------QASGGTRVLPALRDLNRQPVMATELAKSAAVVLDPPH 339 Query: 302 SGLDDATVGMVQAYPH-ILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHME 357 +G +V P ++Y+SCNP +L RDL+ L + ++ L + DQF ++ +E Sbjct: 340 AGAGAQVAQIVTGRPRCVIYVSCNPAALQRDLTPLRQAGYRLDSLTVIDQFLWSAEVE 397 >gi|162148821|ref|YP_001603282.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Gluconacetobacter diazotrophicus PAl 5] gi|209545431|ref|YP_002277660.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Gluconacetobacter diazotrophicus PAl 5] gi|161787398|emb|CAP56993.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Gluconacetobacter diazotrophicus PAl 5] gi|209533108|gb|ACI53045.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Gluconacetobacter diazotrophicus PAl 5] Length = 426 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 70/283 (24%), Positives = 117/283 (41%), Gaps = 30/283 (10%) Query: 96 LEPLLRAKLFQIDYLTSQSDQAIVTLIYHR---LLDDAWRECAIRLRDALHARKYQIQLI 152 L P LRA + + L D I L L D E A R + A AR ++I I Sbjct: 157 LLPALRAVMQSLGALRRDGDALINMLDSGPDLLLATDGPLEAADRAKLASFARDHRIPRI 216 Query: 153 G--RANKTKIC-LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAAT--K 207 RA T + R ++G + +F QP ++ VLA + Sbjct: 217 AWRRAGTTDVPETAAQTASVRHELSG--VATMPPPGAFLQPTREGEAAIIAAVLAGLPRR 274 Query: 208 GIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266 ++ D ++ELY G G S L +H R LA E + V +R ++ Sbjct: 275 LVRKDTVIELYAGCGTLSFALGQHV-RTLAFE---------------GQPDAVATLRRAT 318 Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH-ILYISCNP 325 T+ + +R+ NR + + + +DPP +G +V P I+Y+SCNP Sbjct: 319 TG-TRVVAEQRDLNRQPVMARQIADARAVVLDPPYTGAGAQMAEIVAGRPERIVYVSCNP 377 Query: 326 DSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRKPS 367 +L RD + L + + ++ + + DQF ++ +E + P+ Sbjct: 378 QALGRDAAGLQAAGYRLDGVTIIDQFLWSTEVEAVCVFTAPPA 420 >gi|160900061|ref|YP_001565643.1| 23S rRNA 5-methyluridine methyltransferase [Delftia acidovorans SPH-1] gi|160365645|gb|ABX37258.1| RNA methyltransferase, TrmA family [Delftia acidovorans SPH-1] Length = 490 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 54/216 (25%), Positives = 90/216 (41%), Gaps = 33/216 (15%) Query: 175 GRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFD 232 G T+ ++ + FTQ N IN ++ L ++ D +++ +CG GNF+L LA Sbjct: 279 GITMPFKPTD--FTQVNPHINRVLVTRALRLLD-VKKDERVIDWFCGLGNFTLPLATQAR 335 Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292 VL +E + V+ + N AAN+ + +++ F F ++ Sbjct: 336 EVLGIEGSDTLVKRSHENYAANNAQRAEGDKLAPTRFVA----RNLFEMTPEMLFADGVA 391 Query: 293 KTIFVDPPRSG----------LDDATVGMVQAYP------------HILYISCNPDSLCR 330 VDPPR G + A +G A P I+Y+SCNP +L R Sbjct: 392 GKWLVDPPREGAFALSKALADIHQARIGAEGAEPLPAGHEAWRFPERIVYVSCNPATLAR 451 Query: 331 DLSILS--TTHTIERLALFDQFPYTRHMECGVLLVR 364 D +L + + + FP+T H+E + R Sbjct: 452 DAGLLVHLAGYRCVSAGVVNMFPHTAHVESMAVFER 487 >gi|148828135|ref|YP_001292888.1| 23S rRNA methyluridine methyltransferase [Haemophilus influenzae PittGG] gi|167012642|sp|A5UI99|RUMB_HAEIG RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName: Full=23S rRNA(M-5-U747)-methyltransferase gi|148719377|gb|ABR00505.1| 23S rRNA m(5)U747-methyltransferase [Haemophilus influenzae PittGG] Length = 392 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 49/157 (31%), Positives = 75/157 (47%), Gaps = 12/157 (7%) Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI-AANHVNNVKIVRMSSKEFT 270 +L +L+CG G F L A+ I +E + I AA+H + KI+ + F Sbjct: 242 NLWDLFCGVGGFGLHCAKALQEKWGKPIKLTGIEISSSAILAASH--SAKILGLEHVNFQ 299 Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD-DATVGMVQAYPH-ILYISCNPDSL 328 N+ ++ + + V+PPR G+ + + + Q PH ILY SCN ++ Sbjct: 300 SLDAASVIENKNEN------KPDLVIVNPPRRGIGKELSEFLNQIQPHFILYSSCNAMTM 353 Query: 329 CRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 +DL L T + ++ LFD FP T H E VLL RK Sbjct: 354 GKDLQHL-TCYKPLKIQLFDMFPQTSHYEVLVLLERK 389 >gi|126738472|ref|ZP_01754177.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Roseobacter sp. SK209-2-6] gi|126720271|gb|EBA16977.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Roseobacter sp. SK209-2-6] Length = 415 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 46/179 (25%), Positives = 78/179 (43%), Gaps = 20/179 (11%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 SF Q +L V T G + +L+L+ G G F+L LA + V A+E Sbjct: 242 GSFLQATTDGEAALLGAVREITTGAK-RILDLFAGCGTFTLPLAERAE-VYALEGE---- 295 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR----LKDIDIHSYRFKTIFVDPP 300 A + ++ KE Q R+ R +D+ ++ + +DPP Sbjct: 296 --------AEMIAALEAGWRRGKELRQVKAETRDLFRNPLLPEDMKPFGAHYEAVVIDPP 347 Query: 301 RSGLDDATVGMVQA-YPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHME 357 R+G + + +A P + Y+SCNP S RD +L +++ + + DQF ++ H E Sbjct: 348 RAGAEAQVAQLAKARLPVVAYVSCNPISFARDAKVLVGAGYSLNWVQVVDQFRWSAHTE 406 >gi|17987779|ref|NP_540413.1| tRNA (uracil-5-) -methyltransferase [Brucella melitensis bv. 1 str. 16M] gi|256044155|ref|ZP_05447062.1| tRNA (uracil-5-) -methyltransferase [Brucella melitensis bv. 1 str. Rev.1] gi|260563512|ref|ZP_05833998.1| SAM binding domain-containing protein [Brucella melitensis bv. 1 str. 16M] gi|265990567|ref|ZP_06103124.1| RNA methyltransferase [Brucella melitensis bv. 1 str. Rev.1] gi|50401634|sp|Q8YFM4|Y1496_BRUME RecName: Full=Uncharacterized RNA methyltransferase BMEI1496 gi|17983503|gb|AAL52677.1| tRNA (uracil-5-) -methyltransferase [Brucella melitensis bv. 1 str. 16M] gi|260153528|gb|EEW88620.1| SAM binding domain-containing protein [Brucella melitensis bv. 1 str. 16M] gi|263001351|gb|EEZ13926.1| RNA methyltransferase [Brucella melitensis bv. 1 str. Rev.1] Length = 415 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 50/182 (27%), Positives = 84/182 (46%), Gaps = 16/182 (8%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 F Q A M VLA G + +L+CG G F+L +A V AVE ++ Sbjct: 245 GCFLQATAEAEETMAALVLAHL-GKARRVADLFCGVGTFALRIAEK-SAVHAVENDAAAL 302 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 A + HV +K V + ++ + +E + + DPPR+G Sbjct: 303 AALDRGV--RHVQGLKPVSIERRDLFRRPLMTKEL----------LPYNAVVFDPPRAGA 350 Query: 305 DDATVGMVQA-YPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLL 362 ++ + + ++ ++ ISCNP +L RDL+IL + IER+ DQF ++ H+E +L Sbjct: 351 EEQALELAKSKVEKVVAISCNPVTLARDLAILQKGGYRIERVTPIDQFLWSAHVEAVAVL 410 Query: 363 VR 364 + Sbjct: 411 TK 412 >gi|296134904|ref|YP_003642146.1| RNA methyltransferase, TrmA family [Thiomonas intermedia K12] gi|295795026|gb|ADG29816.1| RNA methyltransferase, TrmA family [Thiomonas intermedia K12] Length = 474 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 75/292 (25%), Positives = 120/292 (41%), Gaps = 63/292 (21%) Query: 112 SQSDQAIVTLIYH-RLLDDAWRECAIRLRD--ALHARKYQIQLIGRANKTKICLDRDYVD 168 + D+ V ++ H L DA R+ RLRD H ++ +Q G + + D + + Sbjct: 192 AMGDRVTVLVLRHLEPLTDADRQ---RLRDFGQQHGVQWWLQPKGPDSVAPLDPDAEPLS 248 Query: 169 ERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVL 227 L G + +R + FTQ N IN M+ L + D +++ +CG GNF+L + Sbjct: 249 YALPEFGIVMPFRPTD--FTQVNPQINRVMVARALRLLGARRTDRVIDWFCGLGNFTLPI 306 Query: 228 ARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDI 287 A +VL VE + V A N N + + K+V FT R + D+ Sbjct: 307 ATQARQVLGVEGSATLVARALDNALHNDLQD-KVV------FTA-----RNLFEMDADDL 354 Query: 288 HSYRFKTIF-VDPPRSG-------LDDATVGMVQAYPH---------------------- 317 +Y ++ VDPPR G L +A G + A Sbjct: 355 RAYGEADLWLVDPPRDGALALCKALAEAVNGPLGAPGEEETRAAGEASAAPKPVAPPVVP 414 Query: 318 ----------ILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTRHME 357 I+Y+SCNP +L RD +L +T+ + + FP+T H+E Sbjct: 415 AVAPFKPPRRIVYVSCNPATLARDAGLLVHQAGYTLRAAGVMNMFPHTAHVE 466 >gi|254693219|ref|ZP_05155047.1| 23S ribosomal RNA (uracil-5-)-methyltransferase rumA [Brucella abortus bv. 3 str. Tulya] gi|261213462|ref|ZP_05927743.1| tRNA (Uracil-5-)-methyltransferase [Brucella abortus bv. 3 str. Tulya] gi|260915069|gb|EEX81930.1| tRNA (Uracil-5-)-methyltransferase [Brucella abortus bv. 3 str. Tulya] Length = 415 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 50/182 (27%), Positives = 84/182 (46%), Gaps = 16/182 (8%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 F Q A M VLA G + +L+CG G F+L +A V AVE ++ Sbjct: 245 GCFLQATAEAEETMAALVLAHL-GKARRVADLFCGVGTFALRIAEK-SAVHAVENDAAAL 302 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 A + HV +K V + ++ + +E + + DPPR+G Sbjct: 303 AALDRGV--RHVQGLKPVSIERRDLFRRPLMPKEL----------LPYNAVVFDPPRAGA 350 Query: 305 DDATVGMVQA-YPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLL 362 ++ + + ++ ++ ISCNP +L RDL+IL + IER+ DQF ++ H+E +L Sbjct: 351 EEQALELAKSKVEKVVAISCNPVTLARDLAILQKGGYRIERVTPIDQFLWSAHVEAVAVL 410 Query: 363 VR 364 + Sbjct: 411 TK 412 >gi|16272896|ref|NP_439119.1| 23S rRNA methyluridine methyltransferase [Haemophilus influenzae Rd KW20] gi|260580048|ref|ZP_05847878.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Haemophilus influenzae RdAW] gi|1175340|sp|P44083|RUMB_HAEIN RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName: Full=23S rRNA(M-5-U747)-methyltransferase gi|1573984|gb|AAC22619.1| RNA methyltransferase, putative [Haemophilus influenzae Rd KW20] gi|260093332|gb|EEW77265.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Haemophilus influenzae RdAW] Length = 392 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 49/157 (31%), Positives = 75/157 (47%), Gaps = 12/157 (7%) Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI-AANHVNNVKIVRMSSKEFT 270 +L +L+CG G F L A+ I +E + I AA+H + KI+ + F Sbjct: 242 NLWDLFCGVGGFGLHCAKALQEKWGKPIKLTGIEISSSAILAASH--SAKILGLEHVNFQ 299 Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD-DATVGMVQAYPH-ILYISCNPDSL 328 N+ ++ + + V+PPR G+ + + + Q PH ILY SCN ++ Sbjct: 300 SLDAASVIENKNEN------KPDLVIVNPPRRGIGKELSEFLNQIQPHFILYSSCNAMTM 353 Query: 329 CRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 +DL L T + ++ LFD FP T H E VLL RK Sbjct: 354 GKDLQHL-TCYKPLKIQLFDMFPQTSHYEVLVLLERK 389 >gi|170692346|ref|ZP_02883509.1| RNA methyltransferase, TrmA family [Burkholderia graminis C4D1M] gi|170142776|gb|EDT10941.1| RNA methyltransferase, TrmA family [Burkholderia graminis C4D1M] Length = 475 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 53/189 (28%), Positives = 79/189 (41%), Gaps = 22/189 (11%) Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 FTQ N IN ++ L + D +L+L+CG GNF+L LAR V+ +E + Sbjct: 297 FTQVNHAINRVLVSRALRLLAPARTDRVLDLFCGIGNFTLPLARIAREVVGIEGSDVLTS 356 Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG-- 303 A N N V + F E + ++ + F VDPPR G Sbjct: 357 RALANAELNGV-------AAHTSFACRNLFEVTADDMRALG----HFDKFLVDPPREGAL 405 Query: 304 ------LDDATVGMVQAYPHILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTRH 355 + A G I+Y+SCNP +L RD +L + + + + FP+T H Sbjct: 406 AVAKALAEIAQSGDGPLPKRIVYVSCNPSTLARDAGLLVHEAGYRLVGAGVVNMFPHTSH 465 Query: 356 MECGVLLVR 364 +E L R Sbjct: 466 VESIALFER 474 >gi|294338841|emb|CAZ87175.1| putative 23S rRNA (Uracil-5-)-methyltransferase rumA (23S rRNA(M-5-U1939)-methyltransferase) [Thiomonas sp. 3As] Length = 470 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 74/288 (25%), Positives = 120/288 (41%), Gaps = 59/288 (20%) Query: 112 SQSDQAIVTLIYH-RLLDDAWRECAIRLRD--ALHARKYQIQLIGRANKTKICLDRDYVD 168 + D+ V ++ H L DA R+ RLRD H ++ +Q G + + D + + Sbjct: 192 AMGDRVTVLVLRHLEPLTDADRQ---RLRDFGQQHGVQWWLQPKGPDSVAPLDPDAEPLS 248 Query: 169 ERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVL 227 L G + +R + FTQ N IN M+ L + D +++ +CG GNF+L + Sbjct: 249 YALPEFGIVMPFRPTD--FTQVNPQINRVMVARALRLLGARRTDRVIDWFCGLGNFTLPI 306 Query: 228 ARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDI 287 A +VL VE + V A N N + + K+V FT R + D+ Sbjct: 307 ATQARQVLGVEGSATLVARALDNALHNDLQD-KVV------FTA-----RNLFEMDADDL 354 Query: 288 HSYRFKTIF-VDPPRSG-------LDDATVGMV--------------------------- 312 +Y ++ VDPPR G L +A G + Sbjct: 355 RAYGEADLWLVDPPRDGALALCKALAEAVNGPLGTPGEEETRAAGEASAAPKPVAPPVAP 414 Query: 313 -QAYPHILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTRHME 357 + I+Y+SCNP +L RD +L +T+ + + FP+T H+E Sbjct: 415 FKPPRRIVYVSCNPATLARDAGLLVHQAGYTLRAAGVMNMFPHTAHVE 462 >gi|254718616|ref|ZP_05180427.1| 23S ribosomal RNA (uracil-5-)-methyltransferase rumA [Brucella sp. 83/13] gi|265983593|ref|ZP_06096328.1| hypothetical protein BAKG_01706 [Brucella sp. 83/13] gi|306839866|ref|ZP_07472664.1| 23S ribosomal RNA (uracil-5-)-methyltransferase rumA [Brucella sp. NF 2653] gi|264662185|gb|EEZ32446.1| hypothetical protein BAKG_01706 [Brucella sp. 83/13] gi|306405052|gb|EFM61333.1| 23S ribosomal RNA (uracil-5-)-methyltransferase rumA [Brucella sp. NF 2653] Length = 415 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 50/182 (27%), Positives = 84/182 (46%), Gaps = 16/182 (8%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 F Q A M VLA G + +L+CG G F+L +A V AVE ++ Sbjct: 245 GCFLQATAEAEETMAALVLAHL-GKARRVADLFCGVGTFALRIAEK-SAVHAVENDAAAL 302 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 A + HV +K V + ++ + +E + + DPPR+G Sbjct: 303 AALDRGV--RHVQGLKPVSIERRDLFRRPLMPKEL----------LPYNAVVFDPPRAGA 350 Query: 305 DDATVGMVQA-YPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLL 362 ++ + + ++ ++ ISCNP +L RDL+IL + IER+ DQF ++ H+E +L Sbjct: 351 EEQALELARSKVEKVVAISCNPVTLARDLAILQKGGYRIERVTPIDQFLWSAHVEAVAVL 410 Query: 363 VR 364 + Sbjct: 411 TK 412 >gi|150866809|ref|XP_001386532.2| RNA methyltransferase tRNA(m5U54)methyltransferase [Scheffersomyces stipitis CBS 6054] gi|149388065|gb|ABN68503.2| RNA methyltransferase tRNA(m5U54)methyltransferase [Scheffersomyces stipitis CBS 6054] Length = 542 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 59/252 (23%), Positives = 110/252 (43%), Gaps = 30/252 (11%) Query: 127 LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS 186 L+ R+ I LRD L K T+ C + +T +++ +S Sbjct: 301 LEAQGRQRTILLRDGLRMNKET------GEHTRACYGES--SKVMTEKVEDFVFQFDPSS 352 Query: 187 FTQPNAGINVHMLEWV---LAATKGIQGDLLELYCGNGNFSLVLARHF---DRVLAVEIA 240 F Q N I + +LE++ + L++ YCG G F + L++ +V +E++ Sbjct: 353 FFQNNNSILIPVLEYIKYHIGLGAKSYKYLVDTYCGVGFFGISLSKSIPKEGKVFGIELS 412 Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR-LKDIDIHSYRFKTIFVDP 299 + S+ A +N N + K ++ S + E N +K + + +DP Sbjct: 413 ERSINFATHNAMLNGLEVPKRMQFISGSADSMFKNEEFLNSGIKGKE------SIVIMDP 466 Query: 300 PRSGLDDATV-GMVQAYPH-ILYISCNPDSLCRDLSIL-------STTHTIERLALFDQF 350 R G ++ + +++ P I+Y+SCN + RDLS+ S ++ + + FD F Sbjct: 467 SRKGSTESFMRQLLEFKPKLIIYVSCNVFTQARDLSLFNKLQEEGSISYRVRDVVGFDFF 526 Query: 351 PYTRHMECGVLL 362 P T+H+E +L Sbjct: 527 PQTKHVETVAVL 538 >gi|153824095|ref|ZP_01976762.1| 23S rRNA (uracil-5-)-methyltransferase RumA (23S rRNA(M-5-U1939)-methyltransferase) [Vibrio cholerae B33] gi|126518382|gb|EAZ75605.1| 23S rRNA (uracil-5-)-methyltransferase RumA (23S rRNA(M-5-U1939)-methyltransferase) [Vibrio cholerae B33] Length = 87 Score = 58.2 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 29/78 (37%), Positives = 46/78 (58%), Gaps = 4/78 (5%) Query: 291 RFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRD-LSILSTTHTIERLALF 347 +F + +DP R+G + V + A ++Y+SCNP +L RD S+LS +E+L + Sbjct: 10 KFAKVLLDPARAGAE-GIVDQLSALGAKRVVYVSCNPATLARDSQSLLSQGFRLEKLGML 68 Query: 348 DQFPYTRHMECGVLLVRK 365 D FP+T H+E L V+K Sbjct: 69 DMFPHTSHLESMALFVKK 86 >gi|255326562|ref|ZP_05367641.1| tram domain protein [Rothia mucilaginosa ATCC 25296] gi|255296374|gb|EET75712.1| tram domain protein [Rothia mucilaginosa ATCC 25296] Length = 545 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 56/211 (26%), Positives = 91/211 (43%), Gaps = 22/211 (10%) Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSL 225 V E +T R Y+ F Q + M+ +L + +G+ L+LY G G F+ Sbjct: 327 VTEEVTFGSRRFSYQVSAGGFWQIHRAAPSTMVGTMLTMLRPQEGECTLDLYAGAGLFTA 386 Query: 226 VLARHFD---RVLAVEIAKPSVEAARYNIAA-------NHVNN-VKIVRMSSKEFTQAMR 274 LA V+++E + + + AR N A N N ++++R ++ Sbjct: 387 ALADAVGATGTVVSIEGSPVTHKDARSNFAPDGCSRTENSANTRIEVIRGDVARHLVDLK 446 Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDL 332 EF + ID + +DP R G + T+ + A ILY++C+P SL RD Sbjct: 447 TALEFGEIPAID-------AVVLDPSREGANRTTLERLDALDPKRILYVACDPASLGRDT 499 Query: 333 SILSTTH-TIERLALFDQFPYTRHMECGVLL 362 IL + +L FD +P T H+E L Sbjct: 500 GILRELGWDMVQLRAFDMYPNTHHVESVALF 530 >gi|148559248|ref|YP_001258458.1| RNA methyltransferase [Brucella ovis ATCC 25840] gi|148370505|gb|ABQ60484.1| RNA methyltransferase putative, TrmA family [Brucella ovis ATCC 25840] Length = 415 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 50/182 (27%), Positives = 84/182 (46%), Gaps = 16/182 (8%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 F Q A M VLA G + +L+CG G F+L +A V AVE ++ Sbjct: 245 GCFLQATAEAEETMAALVLAHL-GKARRVADLFCGVGTFALRIAEK-SAVHAVENDAAAL 302 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 A + HV +K V + ++ + +E + + DPPR+G Sbjct: 303 AALDRGV--RHVQGLKPVSIERRDLFRRPLMPKEL----------LPYNAVVFDPPRAGA 350 Query: 305 DDATVGMVQA-YPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLL 362 ++ + + ++ ++ ISCNP +L RDL+IL + IER+ DQF ++ H+E +L Sbjct: 351 EEQALELAKSKVEKVVAISCNPVTLARDLAILQKGGYRIERVTPIDQFLWSAHVEAVAVL 410 Query: 363 VR 364 + Sbjct: 411 TK 412 >gi|91687422|gb|ABE30622.1| 23S rRNA m(5)U-1939 methyltransferase [Burkholderia xenovorans LB400] Length = 434 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 53/193 (27%), Positives = 78/193 (40%), Gaps = 30/193 (15%) Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 FTQ N IN ++ L + D +L+L+CG GNF+L LAR V+ +E ++ Sbjct: 256 FTQVNHAINRVLVSRALRLLAPARTDRVLDLFCGIGNFTLPLARISKEVMGIEGSEVLTS 315 Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR----FKTIFVDPPR 301 A N N V A E L ++ R F +DPPR Sbjct: 316 RALANAGLNGV---------------AGHTSFECRNLFEVTADDLRALGHFDKFLIDPPR 360 Query: 302 SG--------LDDATVGMVQAYPHILYISCNPDSLCRDLSIL--STTHTIERLALFDQFP 351 G + A G I+Y+SC P +L RD +L + + + + FP Sbjct: 361 EGALAVAKALAEIARSGNGPLPKRIVYVSCAPATLARDAGLLVHEAGYRLVGAGVVNMFP 420 Query: 352 YTRHMECGVLLVR 364 +T H+E L R Sbjct: 421 HTSHVESIALFER 433 >gi|78223178|ref|YP_384925.1| 23S rRNA methyltransferase/RumA [Geobacter metallireducens GS-15] gi|78194433|gb|ABB32200.1| 23S rRNA m(5)U-1939 methyltransferase [Geobacter metallireducens GS-15] Length = 493 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 56/185 (30%), Positives = 82/185 (44%), Gaps = 22/185 (11%) Query: 186 SFTQPNAG----INVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241 SF Q N+G I + EW +A G + +++LYCG G SL LA V +E Sbjct: 294 SFFQVNSGSARIIYEKVREW--SALTGNE-KVVDLYCGIGGISLFLAPGAQEVHGIEYVD 350 Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301 +V A N N + N S + A E + D+ + +PPR Sbjct: 351 AAVADAERNARLNGIRNC-----SFEAGDAAELLEELVEEGTEPDV-------VIFNPPR 398 Query: 302 SGLDDATV-GMVQAYP-HILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMEC 358 G D + V + P ++Y+SC+P +L RDL IL+ + + D FP T H+E Sbjct: 399 KGCDRRVLEAAVNSGPGRMIYVSCSPATLARDLDILAGLGYQTREIQPVDMFPQTPHIEN 458 Query: 359 GVLLV 363 LLV Sbjct: 459 VALLV 463 >gi|308176099|ref|YP_003915505.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Arthrobacter arilaitensis Re117] gi|307743562|emb|CBT74534.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Arthrobacter arilaitensis Re117] Length = 376 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 47/154 (30%), Positives = 67/154 (43%), Gaps = 20/154 (12%) Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274 +LY G G F+L A V +E + +VEAA + A ++++ + EF Sbjct: 238 DLYSGVGGFALHCAAEDRTVYGIETSTEAVEAAETSAKAMELDDIHFKAQDATEFALGA- 296 Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGL--DDATVGMVQAYPHILYISCNPDSLCRDL 332 + + + V+PPR G+ D +T I+Y SCN SL RDL Sbjct: 297 --------------GWAPEAVIVNPPRRGITADLSTWLNGSDVQQIIYSSCNAKSLARDL 342 Query: 333 SILST-THTIERLALFDQFPYTRHMECGVLLVRK 365 L T T+ R + D FP T H E V L RK Sbjct: 343 ERLENYTPTLAR--VMDMFPQTNHYEVIVKLERK 374 >gi|256112958|ref|ZP_05453866.1| tRNA (Uracil-5-)-methyltransferase [Brucella melitensis bv. 3 str. Ether] gi|265994397|ref|ZP_06106954.1| RNA methyltransferase [Brucella melitensis bv. 3 str. Ether] gi|262765510|gb|EEZ11299.1| RNA methyltransferase [Brucella melitensis bv. 3 str. Ether] Length = 415 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 50/182 (27%), Positives = 84/182 (46%), Gaps = 16/182 (8%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 F Q A M VLA G + +L+CG G F+L +A V AVE ++ Sbjct: 245 GCFLQATAEAEETMAALVLAHL-GKARRVADLFCGVGTFALRIAEK-SAVHAVENDAAAL 302 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 A + HV +K V + ++ + +E + + DPPR+G Sbjct: 303 AALDRGV--RHVQGLKPVSIERRDLFRRPLMTKEL----------LPYNAVVFDPPRAGA 350 Query: 305 DDATVGMVQA-YPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLL 362 ++ + + ++ ++ ISCNP +L RDL+IL + IER+ DQF ++ H+E +L Sbjct: 351 EEQALELAKSKVEKVVAISCNPVTLARDLAILQKGGYRIERVTPIDQFLWSAHVEAVAVL 410 Query: 363 VR 364 + Sbjct: 411 TK 412 >gi|225851974|ref|YP_002732207.1| tRNA (Uracil-5-)-methyltransferase [Brucella melitensis ATCC 23457] gi|256264518|ref|ZP_05467050.1| SAM binding domain-containing protein [Brucella melitensis bv. 2 str. 63/9] gi|225640339|gb|ACO00253.1| tRNA (Uracil-5-)-methyltransferase [Brucella melitensis ATCC 23457] gi|263094851|gb|EEZ18589.1| SAM binding domain-containing protein [Brucella melitensis bv. 2 str. 63/9] gi|326408470|gb|ADZ65535.1| tRNA (Uracil-5-)-methyltransferase [Brucella melitensis M28] gi|326538187|gb|ADZ86402.1| tRNA (Uracil-5-)-methyltransferase [Brucella melitensis M5-90] Length = 415 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 50/182 (27%), Positives = 84/182 (46%), Gaps = 16/182 (8%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 F Q A M VLA G + +L+CG G F+L +A V AVE ++ Sbjct: 245 GCFLQATAEAEETMAALVLAHL-GKARRVADLFCGVGTFALRIAEK-SAVHAVENDAAAL 302 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 A + HV +K V + ++ + +E + + DPPR+G Sbjct: 303 AALDRGV--RHVQGLKPVSIERRDLFRRPLMTKEL----------LPYNAVVFDPPRAGA 350 Query: 305 DDATVGMVQA-YPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLL 362 ++ + + ++ ++ ISCNP +L RDL+IL + IER+ DQF ++ H+E +L Sbjct: 351 EEQALELAKSKVEKVVAISCNPVTLARDLAILQKGGYRIERVTPIDQFLWSAHVEAVAVL 410 Query: 363 VR 364 + Sbjct: 411 TK 412 >gi|206890432|ref|YP_002249201.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Thermodesulfovibrio yellowstonii DSM 11347] gi|206742370|gb|ACI21427.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Thermodesulfovibrio yellowstonii DSM 11347] Length = 389 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 46/181 (25%), Positives = 82/181 (45%), Gaps = 20/181 (11%) Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 SF Q N +++ VL +++ Y G G F++ LA+ ++V+A+E ++ + + Sbjct: 224 SFFQVNTYQAEKLIQTVLNYITQEDKTVIDAYAGVGTFTVFLAQKAEKVIAIEESRSAYK 283 Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD 305 A+ NI N I + K T+ E + N I +DPPR G Sbjct: 284 DAQINIK----NFDNITYLCKK--TEEALFESKING-----------DAIVIDPPRVGCM 326 Query: 306 DATVGMV--QAYPHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLL 362 + + + ++Y+SC P +L RDL L + ++ + D FP T H+E L+ Sbjct: 327 KEVLQAIAEKKIKKVIYVSCEPSTLARDLKYLKEMGYKLKEIQPVDMFPQTYHIENVALM 386 Query: 363 V 363 + Sbjct: 387 I 387 >gi|68249546|ref|YP_248658.1| 23S rRNA methyluridine methyltransferase [Haemophilus influenzae 86-028NP] gi|81336027|sp|Q4QLU9|RUMB_HAEI8 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName: Full=23S rRNA(M-5-U747)-methyltransferase gi|68057745|gb|AAX87998.1| hypothetical RNA methyltransferase [Haemophilus influenzae 86-028NP] Length = 392 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 49/157 (31%), Positives = 75/157 (47%), Gaps = 12/157 (7%) Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI-AANHVNNVKIVRMSSKEFT 270 +L +L+CG G F L A+ I +E + I AA+H + KI+ + F Sbjct: 242 NLWDLFCGVGGFGLHCAKALQEKWGKPIKLTGIEISSSAILAASH--SAKILGLEHVNFQ 299 Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD-DATVGMVQAYPH-ILYISCNPDSL 328 N+ ++ + + V+PPR G+ + + + Q PH ILY SCN ++ Sbjct: 300 SLDAASVIENKNEN------KPDLVIVNPPRRGIGKELSEFLNQIQPHFILYSSCNAMTM 353 Query: 329 CRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 +DL L T + ++ LFD FP T H E VLL RK Sbjct: 354 GKDLQHL-TCYKPLKIQLFDMFPQTSHYEVLVLLERK 389 >gi|206560252|ref|YP_002231016.1| 23S rRNA 5-methyluridine methyltransferase [Burkholderia cenocepacia J2315] gi|198036293|emb|CAR52189.1| putative 23S rRNA (uracil-5-)-methyltransferase [Burkholderia cenocepacia J2315] Length = 465 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 55/190 (28%), Positives = 81/190 (42%), Gaps = 24/190 (12%) Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 FTQ N IN ++ L + D +L+L+CG GNF+L LAR V+ +E + Sbjct: 287 FTQVNHQINRVLVGRALRLLAPSRDDRVLDLFCGIGNFTLPLARLSREVMGIEGSDTLTT 346 Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY-RFKTIFVDPPRSG- 303 A N N V+ T A R E + D+ + F +DPPR G Sbjct: 347 RALANARENGVDG---------HTTFACRNLFE---VTGDDLRALGAFDKFLIDPPREGA 394 Query: 304 -------LDDATVGMVQAYPHILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTR 354 + A G I+Y+SCNP +L RD +L + ++ + + FP T Sbjct: 395 LAVSKALAEIAQSGEGPLPKRIVYVSCNPSTLARDAGLLVHEAGYRLKGAGVVNMFPNTS 454 Query: 355 HMECGVLLVR 364 H+E L R Sbjct: 455 HVESIALFER 464 >gi|326387662|ref|ZP_08209268.1| (Uracil-5)-methyltransferase [Novosphingobium nitrogenifigens DSM 19370] gi|326207708|gb|EGD58519.1| (Uracil-5)-methyltransferase [Novosphingobium nitrogenifigens DSM 19370] Length = 404 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 46/160 (28%), Positives = 77/160 (48%), Gaps = 21/160 (13%) Query: 211 GDLLELYCGNGNFSLVLARHFD---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267 G + +L+ G G F+ LA +VLAVE A+ + H+ RM+ + Sbjct: 259 GVVADLFSGLGTFAFGLAGSAGAAPKVLAVEAARDT-----------HLACQSAARMNGR 307 Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNP 325 A+ R+ N L+ ++ RF + +DPPR+G + VG + A ++Y+SCNP Sbjct: 308 S-VHALHRDLFRNPLRTEELD--RFGGVVLDPPRAGARE-QVGQIAASKVARVVYVSCNP 363 Query: 326 DSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 S RD + ++ + + L QF ++ H+E L VR Sbjct: 364 ASWARDAAQLIEGGYRLAALRAVGQFRWSTHVELASLFVR 403 >gi|88704246|ref|ZP_01101960.1| tRNA (uracil-5-)-methyltransferase/TrmA [Congregibacter litoralis KT71] gi|88701297|gb|EAQ98402.1| tRNA (uracil-5-)-methyltransferase/TrmA [Congregibacter litoralis KT71] Length = 393 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 56/206 (27%), Positives = 99/206 (48%), Gaps = 27/206 (13%) Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAAT--KGIQGDLLELYCGNGNFS 224 +D+ +T + T+ R+ F Q N+ N M W+ A G +LEL+ G+GNF+ Sbjct: 207 IDDHITASEVTVNQRR---PFRQGNSAQNQSMRAWLKARVLEAGPPDHVLELFAGSGNFT 263 Query: 225 LVLAR-HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 VL ++AV+ P++E + + ++S F + R +L+ Sbjct: 264 EVLEEAGCKHIVAVDSFLPAIE---------RLKERDLTGVTS--FGCNLDRGDSAAKLQ 312 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH---ILYISCNPDSLCRDLSI-LSTT 338 + + + + +DPPR GL + +G ++A P I+YISC+P +L RDL + + Sbjct: 313 EPLVIA---SLLLLDPPRDGLKN--IGDYLKAAPALRTIIYISCDPATLARDLKVAVEQG 367 Query: 339 HTIERLALFDQFPYTRHMECGVLLVR 364 ++ + D FP T H+E +L R Sbjct: 368 FELQEVQPLDLFPQTPHVETLTVLRR 393 >gi|298253358|ref|ZP_06977150.1| SAM-dependent methyltransferase [Gardnerella vaginalis 5-1] gi|297532753|gb|EFH71639.1| SAM-dependent methyltransferase [Gardnerella vaginalis 5-1] Length = 443 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 59/230 (25%), Positives = 97/230 (42%), Gaps = 38/230 (16%) Query: 170 RLTVAG-----RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD------LLELYC 218 R+ AG RT Y F Q + H++ +VL + G L +LY Sbjct: 215 RVAAAGDSSRARTFDYDVDARGFWQIHRAAPEHLVSYVLGLVRSALGGRTKNTVLWDLYS 274 Query: 219 GNGNFSLVLARHFD------------------RVLAVEIAKPSVEAARYNIAANHVNNVK 260 G+G F++ LA + RVL++E A +V+ AR NI ++ Sbjct: 275 GSGLFTIPLATLANVGGALSSFAGDSGSAEPARVLSIEGAPIAVKNARRNIGRAGLSR-D 333 Query: 261 IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK---TIFVDPPRSGLDDATVGMV--QAY 315 IV + Q + + F K I RF + +DPPR+G + Sbjct: 334 IVEALEGDVAQTLESQ-VFKASKSSKI-VRRFAHPDVVVLDPPRAGAKAQVCKQIAKSGA 391 Query: 316 PHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364 ++Y++C+P SL RD+ ++++ L FD +P T H+E VL+ + Sbjct: 392 RAVVYVACDPTSLARDVGTFRELGYSVQSLRAFDIYPNTHHVETVVLMSK 441 >gi|115351806|ref|YP_773645.1| 23S rRNA 5-methyluridine methyltransferase [Burkholderia ambifaria AMMD] gi|115281794|gb|ABI87311.1| 23S rRNA m(5)U-1939 methyltransferase [Burkholderia ambifaria AMMD] Length = 484 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 55/190 (28%), Positives = 81/190 (42%), Gaps = 24/190 (12%) Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 FTQ N IN ++ L + D +L+L+CG GNF+L LAR V+ +E + Sbjct: 306 FTQVNHQINRVLVGRALRLLAPSRDDRVLDLFCGIGNFTLPLARLSREVMGIEGSDTLTT 365 Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY-RFKTIFVDPPRSG- 303 A N N V+ T A R E + D+ + F +DPPR G Sbjct: 366 RALANARENGVDG---------HTTFACRNLFE---VTGDDLRALGAFDKFLIDPPREGA 413 Query: 304 -------LDDATVGMVQAYPHILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTR 354 + A G I+Y+SCNP +L RD +L + ++ + + FP T Sbjct: 414 LAVSKALAEIAQSGEGPLPKRIVYVSCNPSTLARDAGLLVHEAGYRLKGAGVVNMFPNTS 473 Query: 355 HMECGVLLVR 364 H+E L R Sbjct: 474 HVESIALFER 483 >gi|83942054|ref|ZP_00954516.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Sulfitobacter sp. EE-36] gi|83847874|gb|EAP85749.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Sulfitobacter sp. EE-36] Length = 412 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 44/151 (29%), Positives = 74/151 (49%), Gaps = 23/151 (15%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH----VNNVKIVRMSSKE 268 +++L+ G G FSL LA + V AVE A A +H +K V +++ Sbjct: 264 VIDLFAGCGTFSLPLADQAE-VHAVE------GDAAMTAALDHGWRMSTGLKPVTTEARD 316 Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHIL-YISCNPDS 327 RR + L D + +DPPR+G + +V+A P +L Y+SCNP + Sbjct: 317 L---FRRPLLPDELAKTD-------AVVIDPPRAGAEAQIAEIVKAMPPVLAYVSCNPVT 366 Query: 328 LCRDLSIL-STTHTIERLALFDQFPYTRHME 357 RD ++L + +T+ + + DQF ++ H+E Sbjct: 367 FARDAAVLIAAGYTLNWVQVVDQFRWSSHVE 397 >gi|143580709|sp|Q0BEW2|RUMA_BURCM RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase Length = 465 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 55/190 (28%), Positives = 81/190 (42%), Gaps = 24/190 (12%) Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 FTQ N IN ++ L + D +L+L+CG GNF+L LAR V+ +E + Sbjct: 287 FTQVNHQINRVLVGRALRLLAPSRDDRVLDLFCGIGNFTLPLARLSREVMGIEGSDTLTT 346 Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY-RFKTIFVDPPRSG- 303 A N N V+ T A R E + D+ + F +DPPR G Sbjct: 347 RALANARENGVDG---------HTTFACRNLFE---VTGDDLRALGAFDKFLIDPPREGA 394 Query: 304 -------LDDATVGMVQAYPHILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTR 354 + A G I+Y+SCNP +L RD +L + ++ + + FP T Sbjct: 395 LAVSKALAEIAQSGEGPLPKRIVYVSCNPSTLARDAGLLVHEAGYRLKGAGVVNMFPNTS 454 Query: 355 HMECGVLLVR 364 H+E L R Sbjct: 455 HVESIALFER 464 >gi|312868954|ref|ZP_07729134.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus oris PB013-T2-3] gi|311095518|gb|EFQ53782.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus oris PB013-T2-3] Length = 497 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 50/180 (27%), Positives = 75/180 (41%), Gaps = 15/180 (8%) Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 SF Q N + E V A + D L++ Y G G L LA V +E+ +V Sbjct: 326 SFLQLNPEQTEALYEQVAEALELAPEDTLIDAYAGIGTIGLSLASRVKAVRGMEVIPEAV 385 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 A N N + N + + + E R D +F + VDPPR+GL Sbjct: 386 ADANANAKLNGITNTQY---------EVGKAEELMPRWLD---EGLQFDALVVDPPRTGL 433 Query: 305 DDATVGMV-QAYP-HILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362 DD + + + P Y+SC SL R+L L++ + ++ + D P T E V L Sbjct: 434 DDELIKQILRVKPRKFAYVSCGMASLARNLRRLTSVYHVDYIQPIDMMPQTARCEAVVKL 493 >gi|311742639|ref|ZP_07716448.1| RNA methyltransferase [Aeromicrobium marinum DSM 15272] gi|311314267|gb|EFQ84175.1| RNA methyltransferase [Aeromicrobium marinum DSM 15272] Length = 401 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 65/259 (25%), Positives = 112/259 (43%), Gaps = 36/259 (13%) Query: 116 QAIVTLIYHRLL-DDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVA 174 +AIV+ HRLL DA E A+ + G A T++ ++ R+T + Sbjct: 169 EAIVSSAGHRLLVTDATVEDALEAATDGVVAVDGVVRAGSAALTEVVEHHEF---RVTGS 225 Query: 175 GRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFSLVLARHFDR 233 G F Q + +++ V+A GD++ +LY G G F+ LA Sbjct: 226 G-----------FWQVHPAAAGTLVDAVMAGAAVRPGDVVADLYAGVGLFTAFLADAVGP 274 Query: 234 ---VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY 290 V +VE + AR N+ ++V VR+ + +A+R + Sbjct: 275 DGLVHSVEADPVAARDARRNL-----HDVAQVRLHAATTERALRD----------GLVGD 319 Query: 291 RFKTIFVDPPRSGLDDATVGMVQAYPH-ILYISCNPDSLCRDLS-ILSTTHTIERLALFD 348 R + +DPPR+G + P +++++C+P +L RDL+ + + + L F Sbjct: 320 RADVVVLDPPRAGAKRVVEAVAALGPRTVVHVACDPAALARDLAGFAAAGYRLADLRGFA 379 Query: 349 QFPYTRHMECGVLLVRKPS 367 FP T H+EC LL++ S Sbjct: 380 LFPMTHHVECVALLIKTGS 398 >gi|294851816|ref|ZP_06792489.1| RNA methyltransferase [Brucella sp. NVSL 07-0026] gi|294820405|gb|EFG37404.1| RNA methyltransferase [Brucella sp. NVSL 07-0026] Length = 415 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 50/182 (27%), Positives = 84/182 (46%), Gaps = 16/182 (8%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 F Q A M VLA G + +L+CG G F+L +A V AVE ++ Sbjct: 245 GCFLQATAEAEETMAALVLAHL-GKARCVADLFCGVGTFALRIAEK-SAVHAVENDAAAL 302 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 A + HV +K V + ++ + +E + + DPPR+G Sbjct: 303 AALDRGV--RHVQGLKPVSIERRDLFRRPLMPKEL----------LPYNAVVFDPPRAGA 350 Query: 305 DDATVGMVQA-YPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLL 362 ++ + + ++ ++ ISCNP +L RDL+IL + IER+ DQF ++ H+E +L Sbjct: 351 EEQALELAKSKVEKVVAISCNPVTLARDLAILQKGGYRIERVTPIDQFLWSAHVEAVAVL 410 Query: 363 VR 364 + Sbjct: 411 TK 412 >gi|121594754|ref|YP_986650.1| 23S rRNA 5-methyluridine methyltransferase [Acidovorax sp. JS42] gi|143580440|sp|A1W8J9|RUMA_ACISJ RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|120606834|gb|ABM42574.1| 23S rRNA m(5)U-1939 methyltransferase [Acidovorax sp. JS42] Length = 482 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 52/215 (24%), Positives = 88/215 (40%), Gaps = 31/215 (14%) Query: 175 GRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDR 233 G T+ ++ + FTQ N IN ++ L + + +++ +CG GNF+L +A Sbjct: 273 GITMPFKPTD--FTQVNPHINRVLVTRALRLLDARKDERVIDWFCGLGNFTLPIATQARE 330 Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293 VL +E ++ V +R N +N +++ F F ++ I Sbjct: 331 VLGIEGSEALVARSRENYQSNQAQRQDGSALAATSFVA----RNLFEMTPEMLIADGASD 386 Query: 294 TIFVDPPRSG----------LDDATVGMVQAYP------------HILYISCNPDSLCRD 331 VDPPR G + A +G A P I+Y+SCNP +L RD Sbjct: 387 KWLVDPPREGAFALSKALADIHQARIGAEDAPPLPAGHEGWQPPRRIVYVSCNPATLARD 446 Query: 332 LSIL--STTHTIERLALFDQFPYTRHMECGVLLVR 364 +L + + + FP+T H+E + R Sbjct: 447 AGLLVHQAGYRCVAAGVVNMFPHTAHVESMAVFER 481 >gi|83953103|ref|ZP_00961825.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Sulfitobacter sp. NAS-14.1] gi|83842071|gb|EAP81239.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Sulfitobacter sp. NAS-14.1] Length = 412 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 44/151 (29%), Positives = 74/151 (49%), Gaps = 23/151 (15%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH----VNNVKIVRMSSKE 268 +++L+ G G FSL LA + V AVE A A +H +K V +++ Sbjct: 264 VIDLFAGCGTFSLPLADQAE-VHAVE------GDAAMTAALDHGWRMSTGLKPVTTEARD 316 Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHIL-YISCNPDS 327 RR + L D + +DPPR+G + +V+A P +L Y+SCNP + Sbjct: 317 L---FRRPLLPDELAKTD-------AVVIDPPRAGAEAQIAEIVKAMPPVLAYVSCNPVT 366 Query: 328 LCRDLSIL-STTHTIERLALFDQFPYTRHME 357 RD ++L + +T+ + + DQF ++ H+E Sbjct: 367 FARDAAVLIAAGYTLNWVQVVDQFRWSSHVE 397 >gi|320529040|ref|ZP_08030132.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Selenomonas artemidis F0399] gi|320138670|gb|EFW30560.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Selenomonas artemidis F0399] Length = 457 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 38/152 (25%), Positives = 62/152 (40%), Gaps = 21/152 (13%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ YCG G +L LA+ V +EI +P++ AR N N + N + + + + Sbjct: 312 VIDAYCGTGTITLFLAQRARNVYGIEIVRPAILDARKNARDNGIKNAEFIVGDATAVMPS 371 Query: 273 MRRE-----REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYISCNPDS 327 + R+ K PR I+Y+SCNP + Sbjct: 372 LYRQGVRPDVVVVDPPRAGCTPTVLKNFANMKPR---------------RIVYVSCNPAT 416 Query: 328 LCRDLSILST-THTIERLALFDQFPYTRHMEC 358 L RDL+I+ + + D FP T H+EC Sbjct: 417 LARDLAIMKDLGYEAREIQPVDLFPQTSHVEC 448 >gi|15964631|ref|NP_384984.1| putative RNA methyltransferase protein [Sinorhizobium meliloti 1021] gi|307304208|ref|ZP_07583960.1| (Uracil-5)-methyltransferase [Sinorhizobium meliloti BL225C] gi|307320513|ref|ZP_07599928.1| (Uracil-5)-methyltransferase [Sinorhizobium meliloti AK83] gi|50401643|sp|Q92RJ3|Y878_RHIME RecName: Full=Uncharacterized RNA methyltransferase R00878 gi|15073809|emb|CAC45450.1| Putative RNA methyltransferase [Sinorhizobium meliloti 1021] gi|306893789|gb|EFN24560.1| (Uracil-5)-methyltransferase [Sinorhizobium meliloti AK83] gi|306902676|gb|EFN33269.1| (Uracil-5)-methyltransferase [Sinorhizobium meliloti BL225C] Length = 415 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 54/175 (30%), Positives = 82/175 (46%), Gaps = 16/175 (9%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 +FTQ M + VLA G + +L+ G G F+L +AR RV AVE +V Sbjct: 248 GAFTQATRPAEDAMAKLVLAHV-GKAKRVADLFAGIGTFALRIARTA-RVHAVEGDDRAV 305 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 +A + AA + +K V ++ RR LK F + DPPR+G Sbjct: 306 KA--LDFAARNTQGLKPVTAEKRDL---FRRPMMAQELK-------AFDAVVFDPPRAGA 353 Query: 305 DDATVGMVQA-YPHILYISCNPDSLCRDLSILSTT-HTIERLALFDQFPYTRHME 357 + + ++ I +SCNP +L RDLSIL+ + I + DQF ++ H+E Sbjct: 354 ETQCHELARSGVKKIAAVSCNPVTLARDLSILTAAGYRITGVTPIDQFLWSAHVE 408 >gi|332296500|ref|YP_004438423.1| (Uracil-5)-methyltransferase [Thermodesulfobium narugense DSM 14796] gi|332179603|gb|AEE15292.1| (Uracil-5)-methyltransferase [Thermodesulfobium narugense DSM 14796] Length = 413 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 43/154 (27%), Positives = 70/154 (45%), Gaps = 17/154 (11%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++LY G G+ L L D+V+ +E + S + NI A NV + +S+ ++ Sbjct: 275 IVDLYSGVGSIGLSLRDLADKVVLIESFRNSNLYSIKNIKALGAKNVVPILSNSETISKD 334 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSG--LDDATVGMVQAYPHILYISCNPDSLCR 330 + +E + + +DPPR G + I Y+SCNP +L R Sbjct: 335 ILQESD---------------VVILDPPRDGAKKILLDKLLKNLPKKICYLSCNPITLGR 379 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 DLS L + ++++ FD FP T H E L R Sbjct: 380 DLSFLLKKYDLKKIYGFDFFPNTVHAEVLAFLER 413 >gi|222110633|ref|YP_002552897.1| 23S rRNA 5-methyluridine methyltransferase [Acidovorax ebreus TPSY] gi|221730077|gb|ACM32897.1| RNA methyltransferase, TrmA family [Acidovorax ebreus TPSY] Length = 482 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 52/215 (24%), Positives = 88/215 (40%), Gaps = 31/215 (14%) Query: 175 GRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDR 233 G T+ ++ + FTQ N IN ++ L + + +++ +CG GNF+L +A Sbjct: 273 GITMPFKPTD--FTQVNPHINRVLVTRALRLLDARKDERVIDWFCGLGNFTLPIATQARE 330 Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293 VL +E ++ V +R N +N +++ F F ++ I Sbjct: 331 VLGIEGSEALVARSRENYQSNQAQRQDGSALAATSFVA----RNLFEMTPEMLIADGASD 386 Query: 294 TIFVDPPRSG----------LDDATVGMVQAYP------------HILYISCNPDSLCRD 331 VDPPR G + A +G A P I+Y+SCNP +L RD Sbjct: 387 KWLVDPPREGAFALSKALADIHQARIGAEDAPPLPAGHEGWQPPRRIVYVSCNPATLARD 446 Query: 332 LSIL--STTHTIERLALFDQFPYTRHMECGVLLVR 364 +L + + + FP+T H+E + R Sbjct: 447 AGLLVHQAGYRCVAAGVVNMFPHTAHVESMAVFER 481 >gi|283458269|ref|YP_003362888.1| SAM-dependent methyltransferase [Rothia mucilaginosa DY-18] gi|283134303|dbj|BAI65068.1| SAM-dependent methyltransferase related to tRNA (uracil-5-)-methyltransferase [Rothia mucilaginosa DY-18] Length = 545 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 54/211 (25%), Positives = 91/211 (43%), Gaps = 22/211 (10%) Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSL 225 V E +T R Y+ F Q + M+ +L + +G+ L+LY G G F+ Sbjct: 327 VTEEVTFGSRRFSYQVSAGGFWQIHRAAPSTMVGTMLTMLRPQEGECTLDLYAGAGLFTA 386 Query: 226 VLARHFD---RVLAVEIAKPSVEAARYNIAANHVNN--------VKIVRMSSKEFTQAMR 274 LA V+++E + + + AR N A + + ++++R ++ Sbjct: 387 ALADAVGATGTVVSIEGSPVTHKDARSNFAPDGCSRTENSADTRIEVIRGDVARHLVDLK 446 Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDL 332 EF + ID + +DP R G + T+ + A ILY++C+P SL RD Sbjct: 447 TALEFGEIPAID-------AVVLDPSREGANRTTLERLDALDPKRILYVACDPASLGRDT 499 Query: 333 SILSTTH-TIERLALFDQFPYTRHMECGVLL 362 IL + +L FD +P T H+E L Sbjct: 500 GILRELGWDMVQLRAFDMYPNTHHVETVALF 530 >gi|116334661|ref|YP_796188.1| tRNA (uracil-5-)-methyltransferase related enzyme [Lactobacillus brevis ATCC 367] gi|116100008|gb|ABJ65157.1| tRNA (uracil-5-)-methyltransferase related enzyme [Lactobacillus brevis ATCC 367] Length = 487 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 45/155 (29%), Positives = 71/155 (45%), Gaps = 14/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ Y G G L LA V +EI +V+ A N AAN + N ++++ Sbjct: 344 VVDAYAGIGTIGLSLADVAAEVRGMEIIPEAVDDANANAAANGITNAHYEVGTAEDL--- 400 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330 L + +R I VDPPR+GLD + + A ++Y+SCNP +L + Sbjct: 401 ---------LPKWVMAGFRPDAIVVDPPRTGLDATLIETILAIRPSKLVYVSCNPSTLAK 451 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 DL L+ + +E + D P T E V L R+ Sbjct: 452 DLVDLTADYRVEYIQSVDMMPQTARCEAVVKLTRR 486 >gi|329946857|ref|ZP_08294269.1| TRAM domain protein [Actinomyces sp. oral taxon 170 str. F0386] gi|328526668|gb|EGF53681.1| TRAM domain protein [Actinomyces sp. oral taxon 170 str. F0386] Length = 462 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 44/158 (27%), Positives = 76/158 (48%), Gaps = 17/158 (10%) Query: 213 LLELYCGNGNFSLVLAR---HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269 +LELY G G F+L LA +VL++E ++ +V AR + + + R+S++ Sbjct: 315 VLELYSGAGLFTLPLAALVGSGGQVLSLEGSEQAVRDARRTLHEHPGARLAAGRVSARSV 374 Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDS 327 RE + R + +DPPR G + V A I+ ++C+P + Sbjct: 375 -------RELAG----SFSAGRPDVVVLDPPRQGAGREVIEAVAALGAERIVLVACDPAA 423 Query: 328 LCRDL-SILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 L RDL ++L + + + ++ D FP+T H E +L R Sbjct: 424 LARDLGTLLRSGYGLGAMSALDMFPHTHHFETIAVLDR 461 >gi|162447431|ref|YP_001620563.1| TrmA family RNA methyltransferase [Acholeplasma laidlawii PG-8A] gi|161985538|gb|ABX81187.1| RNA methyltransferase, TrmA family, putative [Acholeplasma laidlawii PG-8A] Length = 380 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 41/155 (26%), Positives = 73/155 (47%), Gaps = 23/155 (14%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++ Y G G +L+ +++ +V +EI S + A N N + N + + + E T Sbjct: 241 VIDAYSGIGTITLLASKYAKKVYGLEINPASHKDAIDNKRMNQITNAEFI-LGDVEHT-- 297 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY-----PHILYISCNPDS 327 ++ + + T+ +DP R G A++ +Q I+Y+SCNPD+ Sbjct: 298 ------------LENFTDKVDTLIMDPARDG---ASLKFIQTVLKLKPKKIVYVSCNPDT 342 Query: 328 LCRDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362 RD L + + ++ FD F YT H+E VLL Sbjct: 343 QERDYKQLRNFYNLTKILPFDMFSYTPHVENIVLL 377 >gi|283457325|ref|YP_003361899.1| SAM-dependent methyltransferase [Rothia mucilaginosa DY-18] gi|283133314|dbj|BAI64079.1| SAM-dependent methyltransferase related to tRNA (uracil-5-)-methyltransferase [Rothia mucilaginosa DY-18] Length = 409 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 53/213 (24%), Positives = 88/213 (41%), Gaps = 35/213 (16%) Query: 168 DERLTVAGRTLIYRQIEN--------SFTQPNAGINVHML----EWVLAATKGIQGDLLE 215 DE + ++ R + Q+ + SF Q N + M EWV L + Sbjct: 215 DEEIILSERQTLPMQVNDLTLHLRPQSFFQTNTKVAEAMYAQGREWVREVAPR---SLWD 271 Query: 216 LYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273 LYCG G F+L A D V +EI+ +V +A+ +A + V + EF + Sbjct: 272 LYCGVGGFALHAASVMDGGSVTGIEISAEAVASAQRTVAEYGLEGVDFSAQDAPEFAVS- 330 Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRD 331 + + V+PPR G+ ++ ++ ++Y SCN +L +D Sbjct: 331 --------------SGTVPQMLVVNPPRRGIGESLCAWIEGSGIDRVVYSSCNAVTLAKD 376 Query: 332 LSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 L + + ++ L D FP+T H E LL R Sbjct: 377 LERMPSYAPVQGRVL-DMFPHTDHYEVMTLLKR 408 >gi|163841132|ref|YP_001625537.1| TRAM domain-containing protein [Renibacterium salmoninarum ATCC 33209] gi|162954608|gb|ABY24123.1| tRNA (Uracil-5-) -methyltransferase [Renibacterium salmoninarum ATCC 33209] Length = 438 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 42/136 (30%), Positives = 63/136 (46%), Gaps = 16/136 (11%) Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293 VL+VE + + + A+ N A + R+ T A RE +R D+ Sbjct: 316 VLSVEGSPVTSKDAKLNFAGRAEVQILPGRVERVLATAA----RESSRKLDV-------- 363 Query: 294 TIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLS-ILSTTHTIERLALFDQF 350 + +DPPR+G A VG + A + Y+SC+P S RDL + +L FD + Sbjct: 364 -VVLDPPRAGAGKAVVGRITASGAKAVAYVSCDPASFARDLGYFFRAGWELTQLRAFDLY 422 Query: 351 PYTRHMECGVLLVRKP 366 P+T H+E LL KP Sbjct: 423 PHTHHLETVALLRPKP 438 >gi|239632134|ref|ZP_04675165.1| RNA methyltransferase [Lactobacillus paracasei subsp. paracasei 8700:2] gi|239526599|gb|EEQ65600.1| RNA methyltransferase [Lactobacillus paracasei subsp. paracasei 8700:2] Length = 455 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 53/215 (24%), Positives = 93/215 (43%), Gaps = 23/215 (10%) Query: 155 ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATK---GIQG 211 ++++ Y+ E T+ GRT ++ +F Q N + + LAA G+ Sbjct: 258 GKESRLLAGLPYIQE--TLLGRT--FQLSPQAFLQLNPKQTETL--YTLAAKALDLGLHD 311 Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271 L++ YCG G + LA+ + ++ + A+ N AN + N +++ Sbjct: 312 TLIDAYCGIGTVGISLAKGNQPIYGMDTIAEGIADAKANAKANGLTNAHYSVGKAEDIFP 371 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLC 329 +E + + VDPPR+GL+ A + + P +YISCNP +L Sbjct: 372 KWVQE------------GMKPDAVIVDPPRAGLERAFIDALLELDPPKFVYISCNPSTLA 419 Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 RDL L+ + ++ + D FP T E V +R Sbjct: 420 RDLVSLTKRYKVDWIQSIDMFPQTARCEAVVKFIR 454 >gi|257068619|ref|YP_003154874.1| SAM-dependent methyltransferase, tRNA(uracil-5)-methyltransferase [Brachybacterium faecium DSM 4810] gi|256559437|gb|ACU85284.1| SAM-dependent methyltransferase, tRNA(uracil-5)-methyltransferase [Brachybacterium faecium DSM 4810] Length = 440 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 47/162 (29%), Positives = 74/162 (45%), Gaps = 21/162 (12%) Query: 211 GDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR--YNIAANHVNNVKIVRMSSKE 268 G +LY G G FS V A + E SVE R +AA ++ ++ V ++ + Sbjct: 295 GSAWDLYGGVGLFSAVAAEQ----VGPEGTVVSVEGNRRASQLAAENLEDLPQVSTATAD 350 Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPD 326 T + R +D T+ +DPPR+G +G++ I+Y+SC P Sbjct: 351 VTDWVTARR-----GGVD-------TVVLDPPRTGAGVELMGLLATAVRQRIVYVSCEPA 398 Query: 327 SLCRDLSILSTTH-TIERLALFDQFPYTRHMECGVLLVRKPS 367 +L RDL+ + + L FD FP+T H+E +L R S Sbjct: 399 TLARDLAAIEKKGWRLADLRAFDLFPHTHHIESVAVLERATS 440 >gi|52424450|ref|YP_087587.1| 23S rRNA methyluridine methyltransferase [Mannheimia succiniciproducens MBEL55E] gi|97273737|sp|Q65VK8|RUMB_MANSM RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName: Full=23S rRNA(M-5-U747)-methyltransferase gi|52306502|gb|AAU37002.1| TrmA protein [Mannheimia succiniciproducens MBEL55E] Length = 389 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 42/161 (26%), Positives = 71/161 (44%), Gaps = 23/161 (14%) Query: 213 LLELYCGNGNFSLVLARHFDR------VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266 L +L+CG G F L A+ + +EIA ++ A + + V + + Sbjct: 244 LWDLFCGVGGFGLHCAKALQEKNPDIELTGIEIAPSAIYCAGLSAQKCGLKKVNFQSLDA 303 Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYPH-ILYISCN 324 F ++ + + V+PPR G+ + Q P ILY SCN Sbjct: 304 ANFA--------------LNQDENKPDLVIVNPPRRGIGKPLAQFLNQMQPQFILYSSCN 349 Query: 325 PDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 S+ +DL L T + ++++ LFD FP+T H E LL+++ Sbjct: 350 AISMTKDLLEL-THYQLQKIQLFDMFPHTSHYEVLTLLIKR 389 >gi|158523083|ref|YP_001530953.1| (Uracil-5)-methyltransferase [Desulfococcus oleovorans Hxd3] gi|158511909|gb|ABW68876.1| (Uracil-5)-methyltransferase [Desulfococcus oleovorans Hxd3] Length = 371 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 56/194 (28%), Positives = 87/194 (44%), Gaps = 21/194 (10%) Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRV 234 R L+Y +F QP + L+ + GD +++LYCG G + V Sbjct: 193 RGLVYG--PTTFGQPIVELAEASLDRAEHFLNPVSGDQVMDLYCGIGAGLARWKKKTAPV 250 Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294 VE++ SV AR N V + R+ + T A+ E + R Sbjct: 251 TGVELSGESVACARQNAPGATVLR-GMCRLRLPQLTAAL--EPKAPRC-----------L 296 Query: 295 IFVDPPRSGLDDATVGMV--QAYPH-ILYISCNPDSLCRDLSIL-STTHTIERLALFDQF 350 ++ +PPR+G++ + P + +SCN +L RDL++L + + IERL FD F Sbjct: 297 VYANPPRTGMEPEVTQWLADTCRPEKMACLSCNAVTLKRDLTLLENKGYKIERLIPFDFF 356 Query: 351 PYTRHMECGVLLVR 364 P TRH+E LL R Sbjct: 357 PNTRHLEILALLHR 370 >gi|192289445|ref|YP_001990050.1| (uracil-5)-methyltransferase [Rhodopseudomonas palustris TIE-1] gi|192283194|gb|ACE99574.1| (Uracil-5)-methyltransferase [Rhodopseudomonas palustris TIE-1] Length = 413 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 53/183 (28%), Positives = 83/183 (45%), Gaps = 17/183 (9%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 +F Q A + L + A G + +L+CG G F L LA RV A + P+V Sbjct: 245 GAFLQATA-LGEQTLAELAMANLGRAKQVADLFCGVGPFVLRLAEKA-RVFACDSDAPAV 302 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 A + AA + +K V+ +++ RR L+D F + DPPR G Sbjct: 303 TALQK--AAPATSGLKPVKAEARDL---FRRPLAPPELRD-------FDAVLFDPPRQGA 350 Query: 305 DDATVGMVQA-YPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLL 362 + + P ++ +SCN + RD +L + +ER+ DQF YT H+E V + Sbjct: 351 QAQATQLAASRVPLVIAVSCNATTFARDAKLLIDGGYKLERVIPVDQFKYTPHVEL-VAV 409 Query: 363 VRK 365 +RK Sbjct: 410 LRK 412 >gi|161621317|ref|YP_558674.2| 23S rRNA 5-methyluridine methyltransferase [Burkholderia xenovorans LB400] gi|143580804|sp|Q13Z67|RUMA_BURXL RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase Length = 472 Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 53/193 (27%), Positives = 78/193 (40%), Gaps = 30/193 (15%) Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 FTQ N IN ++ L + D +L+L+CG GNF+L LAR V+ +E ++ Sbjct: 294 FTQVNHAINRVLVSRALRLLAPARTDRVLDLFCGIGNFTLPLARISKEVMGIEGSEVLTS 353 Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR----FKTIFVDPPR 301 A N N V A E L ++ R F +DPPR Sbjct: 354 RALANAGLNGV---------------AGHTSFECRNLFEVTADDLRALGHFDKFLIDPPR 398 Query: 302 SG--------LDDATVGMVQAYPHILYISCNPDSLCRDLSIL--STTHTIERLALFDQFP 351 G + A G I+Y+SC P +L RD +L + + + + FP Sbjct: 399 EGALAVAKALAEIARSGNGPLPKRIVYVSCAPATLARDAGLLVHEAGYRLVGAGVVNMFP 458 Query: 352 YTRHMECGVLLVR 364 +T H+E L R Sbjct: 459 HTSHVESIALFER 471 >gi|312372354|gb|EFR20335.1| hypothetical protein AND_20276 [Anopheles darlingi] Length = 735 Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 31/99 (31%), Positives = 53/99 (53%), Gaps = 10/99 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +L++ CG G L ARH +VL V+I ++E A+YN N + N K ++ +F + Sbjct: 415 VLDICCGTGTIGLCFARHCKQVLGVDIVPQAIEDAKYNAERNGIENCKFYSGNADDFIMS 474 Query: 273 MRREREFNRLKDIDIHSYRFKTI--FVDPPRSGLDDATV 309 + +++ +I + ++I VDPPR+GL TV Sbjct: 475 L--------IRNANIVQEQKESIIAIVDPPRAGLRSFTV 505 >gi|126730074|ref|ZP_01745886.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Sagittula stellata E-37] gi|126709454|gb|EBA08508.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Sagittula stellata E-37] Length = 409 Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 47/175 (26%), Positives = 78/175 (44%), Gaps = 16/175 (9%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 +F Q A +L V A +G + +L+ G G F+L LA ++ V Sbjct: 239 GAFLQATAEGEAALLAGVQEALEGCS-HMADLFAGCGTFALPLA-----------SRGKV 286 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA + A + K R K R+ R + RF + +DPPR+G Sbjct: 287 HAAEGDAAMARALD-KGWRQG-KGLRHVTHETRDLFRNPLLPDELSRFDGVVIDPPRAGA 344 Query: 305 DDATVGMVQA-YPHILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHME 357 + + A P I Y+SCNP S RD + +++ +T++ + + DQF ++ H+E Sbjct: 345 EAQVAELASARVPRIAYVSCNPVSYARDAARLIAAGYTLDWVQVVDQFRWSTHVE 399 >gi|332254754|ref|XP_003276497.1| PREDICTED: tRNA (uracil-5-)-methyltransferase homolog isoform 1 [Nomascus leucogenys] gi|332254756|ref|XP_003276498.1| PREDICTED: tRNA (uracil-5-)-methyltransferase homolog isoform 2 [Nomascus leucogenys] gi|332254758|ref|XP_003276499.1| PREDICTED: tRNA (uracil-5-)-methyltransferase homolog isoform 3 [Nomascus leucogenys] Length = 504 Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 52/205 (25%), Positives = 88/205 (42%), Gaps = 28/205 (13%) Query: 177 TLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRV 234 +L R ++F Q N ML + G+ D LL++ CG G L LA+H RV Sbjct: 311 SLKIRISPDAFFQINTA-GAEMLYRTVGELTGVNSDTILLDICCGTGVIGLSLAQHTSRV 369 Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294 L +E+ + +VE AR+ A N + N + +++ + + +E D S Sbjct: 370 LGIELVEQAVEDARWTAAFNGITNSEFHTGQAEKILPGLLKSKE-------DGQSI---V 419 Query: 295 IFVDPPRSGLDDATVGMVQAYPHI---LYISC--------NPDSLC----RDLSILSTTH 339 V+P R+GL + ++ + I +++SC N LC +L Sbjct: 420 AVVNPARAGLHYKVIQAIRNFRAIRTLVFVSCKLHGESTRNVIELCCPPDPAKKLLGEPF 479 Query: 340 TIERLALFDQFPYTRHMECGVLLVR 364 +++ D FP+T H E +L R Sbjct: 480 VLQQAVPVDLFPHTPHCELVLLFTR 504 >gi|322788773|gb|EFZ14341.1| hypothetical protein SINV_01191 [Solenopsis invicta] Length = 559 Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 51/214 (23%), Positives = 92/214 (42%), Gaps = 30/214 (14%) Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNA-GINVHMLEWVLAATKGIQGDLLELYCGNGNF 223 +Y++E L + +R +F Q N G V + A + LL++ CG G Sbjct: 353 EYIEETLL----GMKFRISPQAFFQVNTLGAEVLYKAAIDLAEPTLDTALLDVCCGTGTI 408 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE-FTQAMRREREFNRL 282 L ++H VL V+I +++ A+ N N++ N + +++ + R + N + Sbjct: 409 GLCFSKHCGEVLGVDIIPDAIKDAKENAIKNNIKNCEFFVGKAEDILLPVIYRTTKSNII 468 Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDA---TVGMVQAYPHILYISCNPDSLCRDLSILSTTH 339 VDPPR+GL T+ + ++YISC+P + ++L L+ Sbjct: 469 A------------IVDPPRAGLHQKALLTLRKSKKLDRLVYISCDPHAATKNLIDLARPS 516 Query: 340 TIERLA---------LFDQFPYTRHMECGVLLVR 364 + + L D FP+T+H E + L R Sbjct: 517 SKQYLGDPLVPVKAIAVDMFPHTKHCELILCLER 550 >gi|332861165|ref|XP_521176.3| PREDICTED: tRNA (uracil-5-)-methyltransferase homolog isoform 3 [Pan troglodytes] gi|332861167|ref|XP_003317598.1| PREDICTED: tRNA (uracil-5-)-methyltransferase homolog isoform 1 [Pan troglodytes] gi|332861169|ref|XP_003317599.1| PREDICTED: tRNA (uracil-5-)-methyltransferase homolog isoform 2 [Pan troglodytes] Length = 504 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 52/205 (25%), Positives = 88/205 (42%), Gaps = 28/205 (13%) Query: 177 TLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRV 234 +L R ++F Q N ML + G+ D LL++ CG G L LA+H RV Sbjct: 311 SLKIRISPDAFFQINTA-GAEMLYRTVGELTGVNSDTILLDICCGTGVIGLSLAQHTSRV 369 Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294 L +E+ + +VE AR+ A N + N + +++ + + +E D S Sbjct: 370 LGIELVEQAVEDARWTAAFNGITNSEFHTGQAEKILPGLLKSKE-------DGQSI---V 419 Query: 295 IFVDPPRSGLDDATVGMVQAYPHI---LYISC--------NPDSLC----RDLSILSTTH 339 V+P R+GL + ++ + I +++SC N LC +L Sbjct: 420 AVVNPARAGLHYKVIQAIRNFRAIHTLVFVSCKLHGESTRNVIELCCPPDPAKKLLGEPF 479 Query: 340 TIERLALFDQFPYTRHMECGVLLVR 364 +++ D FP+T H E +L R Sbjct: 480 VLQQAVPVDLFPHTPHCELVLLFTR 504 >gi|296103158|ref|YP_003613304.1| 23S rRNA methyluridine methyltransferase [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295057617|gb|ADF62355.1| 23S rRNA methyluridine methyltransferase [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 379 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 46/157 (29%), Positives = 73/157 (46%), Gaps = 18/157 (11%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + +L+CG G F L A ++ +EIA ++ A+ + A + N+ + S +F Sbjct: 237 MWDLFCGVGGFGLHCATPEMQLTGIEIAAEAIACAKQSAAELGLTNLHFQALDSTQFATG 296 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCR 330 E + V+PPR G+ A + Q P +I+Y SCN ++ Sbjct: 297 QGNVPEL---------------VLVNPPRRGIGKALCDYLSQMAPDYIIYSSCNARTMAT 341 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRKPS 367 D++ L + IER+ LFD FP+T H E LL R P Sbjct: 342 DIAHLPG-YRIERVQLFDMFPHTAHYEVLTLLTRIPG 377 >gi|257485908|ref|ZP_05639949.1| 23S rRNA 5-methyluridine methyltransferase [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 125 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 39/132 (29%), Positives = 63/132 (47%), Gaps = 16/132 (12%) Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNRLKDIDIHSYRF 292 V+AVE VE A N +N ++NV+ + S+ T A D + F Sbjct: 3 VVAVEGVATMVERAAVNAISNDLHNVQFFQADLSQPLTHA-------------DWAAEGF 49 Query: 293 KTIFVDPPRSGLDDATVGMVQAYPH-ILYISCNPDSLCRD-LSILSTTHTIERLALFDQF 350 + +DPPR G + + + +LY+SCNP +L RD + ++S + ++R + D F Sbjct: 50 SAVLLDPPRDGAFEVVRQIRKTGARRLLYVSCNPATLARDTVELISQGYRLKRAGILDMF 109 Query: 351 PYTRHMECGVLL 362 P T H+E L Sbjct: 110 PQTAHVEAMALF 121 >gi|291301985|ref|YP_003513263.1| deoxyribonuclease/rho motif-related TRAM [Stackebrandtia nassauensis DSM 44728] gi|290571205|gb|ADD44170.1| deoxyribonuclease/rho motif-related TRAM [Stackebrandtia nassauensis DSM 44728] Length = 387 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 48/158 (30%), Positives = 74/158 (46%), Gaps = 26/158 (16%) Query: 213 LLELYCGNGNFSLVLARHFD---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269 + +LY G G F+ VLA RV+AVE R AAN + ++ V + + Sbjct: 249 VWDLYAGAGLFAAVLADEVGPSGRVIAVE------SDTRAATAAN-LADLPQVEVRRSDV 301 Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD-DATVGMVQAYPHIL-YISCNPDS 327 +A+ + L DI + +DPPRSG D + A P ++ Y++C+P + Sbjct: 302 AEAV------HHLPSPDI-------VVLDPPRSGAGADLVKAIAAAAPRVITYVACDPAA 348 Query: 328 LCRDLSILSTT-HTIERLALFDQFPYTRHMECGVLLVR 364 L RDL + ++I L +D FP T H E +L R Sbjct: 349 LARDLKTFAANGYSISTLEAYDAFPMTHHFETIAVLRR 386 >gi|89052577|ref|YP_508028.1| (Uracil-5)-methyltransferase [Jannaschia sp. CCS1] gi|88862126|gb|ABD53003.1| 23S rRNA m(5)U-1939 methyltransferase [Jannaschia sp. CCS1] Length = 419 Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 43/147 (29%), Positives = 75/147 (51%), Gaps = 15/147 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + +L+CG G F+L LA+ V AVE A ++A + A +K + +++ Sbjct: 274 IADLFCGIGTFTLPLAQAAP-VHAVEAAPDLLDALDH--ATRFATGLKPITTEARDL--- 327 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY-PHILYISCNPDSLCRD 331 RR + L +F I +DPPR+G + T + +A+ P I +SCNP + RD Sbjct: 328 YRRPLLPDELA-------KFDAIVIDPPRAGAEAQTEQIAKAHVPVIAAVSCNPVTFARD 380 Query: 332 LSILS-TTHTIERLALFDQFPYTRHME 357 +IL+ + ++ + DQF ++ H+E Sbjct: 381 AAILTKAGYALDWVQPVDQFRWSPHVE 407 >gi|303257583|ref|ZP_07343595.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderiales bacterium 1_1_47] gi|330999624|ref|ZP_08323333.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Parasutterella excrementihominis YIT 11859] gi|302859553|gb|EFL82632.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderiales bacterium 1_1_47] gi|329574130|gb|EGG55706.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Parasutterella excrementihominis YIT 11859] Length = 483 Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 50/190 (26%), Positives = 90/190 (47%), Gaps = 17/190 (8%) Query: 175 GRTLIYRQIENSFTQPNAGINVHMLEWVLAATK-GIQGDLLELYCGNGNFSLVLARHFDR 233 G +++R + FTQ N +N M+ L +++ +CG GNF+L LA + Sbjct: 264 GVEVVFRPTD--FTQVNHRLNEVMVTRALRLLHLEPSSKVIDFFCGLGNFTLPLATRSAK 321 Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR-EREFNRLKDIDIHSYRF 292 VL +E + V+ AR N++ + K + F + + +N+L +D Sbjct: 322 VLGIEGSTELVDRARAGAKDNNLAD-KTEFEARNLFDWTLDDWDAVWNKLGGVD------ 374 Query: 293 KTIFVDPPRSG---LDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLA--LF 347 + +DPPR G L + + ++Y+SCNP +L RD ++L + L+ + Sbjct: 375 -RVLIDPPREGAMALCRSLADTDKRPARLVYVSCNPATLARDAALLVREGGWKLLSAGVM 433 Query: 348 DQFPYTRHME 357 + FP+T H+E Sbjct: 434 NMFPHTAHVE 443 >gi|313681652|ref|YP_004059390.1| 23S rRNA m(5)u-747 methyltransferase [Sulfuricurvum kujiense DSM 16994] gi|313154512|gb|ADR33190.1| 23S rRNA m(5)U-747 methyltransferase [Sulfuricurvum kujiense DSM 16994] Length = 372 Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 43/155 (27%), Positives = 77/155 (49%), Gaps = 18/155 (11%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L +L+CG G F+L + ++ +EI ++E AR + A + N++ + + F Sbjct: 234 LWDLFCGVGGFALHCSAPEREIIGIEIEPEAIECARDSAAQLEMTNLRFESLDAASFGA- 292 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCR 330 N + D + V+PPR GL + ++ + H++Y SCN +L + Sbjct: 293 -------NSGEKPD-------AVIVNPPRRGLGEQLCKWLEKVSAEHLIYSSCNAVTLAK 338 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 DL L ++ I+++ LFD FP+T H E V L ++ Sbjct: 339 DLERLG-SYEIQKVQLFDMFPHTEHYEVLVFLKKR 372 >gi|88855673|ref|ZP_01130336.1| 23S rRNA methyltransferase/RumA [marine actinobacterium PHSC20C1] gi|88814997|gb|EAR24856.1| 23S rRNA methyltransferase/RumA [marine actinobacterium PHSC20C1] Length = 410 Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 41/154 (26%), Positives = 74/154 (48%), Gaps = 19/154 (12%) Query: 214 LELYCGNGNFSLVLARHFD---RVLAVEIAKPSVEAARYNIA---ANHVNNVKIVRMSSK 267 L+LY G G F+ + F ++ +VE + + A N++ H ++ R + Sbjct: 260 LDLYGGVGLFAAAVGDKFGPSTKITSVESDAIATDHAAKNLSEWLGAHAETGRVDRWLRE 319 Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNP 325 A ER +RL+ TI +DPPRSG V ++ A ++Y++C+P Sbjct: 320 LLKNASAAER--SRLER--------STIVLDPPRSGAGREVVELLTAARPAQVVYVACDP 369 Query: 326 DSLCRDLSILST-THTIERLALFDQFPYTRHMEC 358 + RD++ + +T+ ++ FD FP+T H+E Sbjct: 370 VAFARDVAFFTNRGYTLAKVRAFDLFPHTHHVEA 403 >gi|111023795|ref|YP_706767.1| RNA methyltransferase [Rhodococcus jostii RHA1] gi|110823325|gb|ABG98609.1| probable RNA methyltransferase [Rhodococcus jostii RHA1] Length = 422 Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 43/164 (26%), Positives = 71/164 (43%), Gaps = 39/164 (23%) Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274 +LY G G F+ LA A PS HV++V+ R + + A+ Sbjct: 284 DLYGGVGVFAAALAGD---------AGPS----------GHVDSVESSRQAVSDGKAAL- 323 Query: 275 REREFNRLKDIDIHSYRF-----------KTIFVDPPRSGLDDATVGMVQAYP--HILYI 321 + L + H+ R + + +DPPR+G + V A ++++ Sbjct: 324 -----SDLPQVRFHAERVERAIAGLASPPRVVVLDPPRAGAGRDVIDAVAAAGAERVVHV 378 Query: 322 SCNPDSLCRDLSI-LSTTHTIERLALFDQFPYTRHMECGVLLVR 364 C+P S RD+ + L+ + ++ L FD FP T H+EC LL R Sbjct: 379 GCDPASFARDIGLYLAQGYHVDELRAFDAFPLTHHVECIALLTR 422 >gi|332298136|ref|YP_004440058.1| deoxyribonuclease/rho motif-related TRAM [Treponema brennaborense DSM 12168] gi|332181239|gb|AEE16927.1| deoxyribonuclease/rho motif-related TRAM [Treponema brennaborense DSM 12168] Length = 430 Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 45/155 (29%), Positives = 70/155 (45%), Gaps = 14/155 (9%) Query: 211 GDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270 G +L+LY G G FS+ LA V VE + ++ A N+ V + SK T Sbjct: 283 GRMLDLYSGAGTFSVFLAETASAVTLVEHNRDALAFAERNLTG--VPHTSYGISGSKWIT 340 Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSL 328 + N D + VDPPRSG++ + A P + +SC+P + Sbjct: 341 AYAEPDIRANGPYDCAV---------VDPPRSGMEKDVRNFLGRSAVPRVCSVSCDPATQ 391 Query: 329 CRDLS-ILSTTHTIERLALFDQFPYTRHMECGVLL 362 RD S ++ + +++L L D +P T H+E LL Sbjct: 392 ARDCSALIRAGYELKKLYLLDFYPQTSHIESLALL 426 >gi|295676471|ref|YP_003604995.1| RNA methyltransferase, TrmA family [Burkholderia sp. CCGE1002] gi|295436314|gb|ADG15484.1| RNA methyltransferase, TrmA family [Burkholderia sp. CCGE1002] Length = 476 Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 53/189 (28%), Positives = 79/189 (41%), Gaps = 22/189 (11%) Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 FTQ N IN ++ L + D +L+L+CG GNF+L LAR V+ +E ++ + Sbjct: 298 FTQVNHAINRVLVSRALRLLAPARTDRVLDLFCGIGNFTLPLARISREVVGIEGSEVLTQ 357 Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG-- 303 A N N V F E + L+ + F VDPPR G Sbjct: 358 RALANAELNGV-------AGHTSFACRNLFEVTADDLRALG----HFDKFLVDPPREGAL 406 Query: 304 ------LDDATVGMVQAYPHILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTRH 355 + A G I+Y+SC P +L RD +L + + + + FP+T H Sbjct: 407 AIAKALAEIAQSGNGPLPKRIVYVSCAPATLARDAGLLVHEAGYRLVGAGVVNMFPHTSH 466 Query: 356 MECGVLLVR 364 +E L R Sbjct: 467 VESIALFER 475 >gi|154248084|ref|YP_001419042.1| putative RNA methyltransferase [Xanthobacter autotrophicus Py2] gi|154162169|gb|ABS69385.1| putative RNA methyltransferase [Xanthobacter autotrophicus Py2] Length = 408 Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 49/174 (28%), Positives = 79/174 (45%), Gaps = 16/174 (9%) Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 +F Q A + E VL AT+G + + +L+ G G F+L LA H RV A E ++ Sbjct: 241 AFLQATAEGERVLAEAVLTATQGAR-KVADLFAGAGTFALRLAEH-ARVFAAESHAGALA 298 Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD 305 A A+ + +K V +++ RR L D + +DPPR G + Sbjct: 299 A--LTKASRTTSGLKAVDGEARDL---FRRPLMAAELAAFD-------AVVIDPPRQGAE 346 Query: 306 DATVGMVQA-YPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHME 357 + QA ++Y+SCN + RD +L + + + DQF Y+ H+E Sbjct: 347 AQARELAQAKLARVVYVSCNVATFARDARLLVAGGFRLGAVTPVDQFRYSPHVE 400 >gi|312212301|emb|CBX92384.1| similar to tRNA(m5U54)methyltransferase [Leptosphaeria maculans] Length = 595 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 40/171 (23%), Positives = 76/171 (44%), Gaps = 31/171 (18%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV--NNVKIVRMSSKEFT 270 L++ Y G+G F++ L+ F L ++I+ S++ A N N + ++ + + + Sbjct: 426 LIDAYSGSGLFTITLSSLFKSSLGIDISTSSIDCATTNAELNSLPPSSTRFIAADAAALF 485 Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSL 328 +++ E + +DPPR G D++ + + Y ++Y+SCN + Sbjct: 486 ASIKSPAEET-------------VVMIDPPRKGCDESFLRQLVEYGPARVVYVSCNVHTQ 532 Query: 329 CRDLSILSTT--------------HTIERLALFDQFPYTRHMECGVLLVRK 365 RD+ +L + +E L FD FP T H+E +L RK Sbjct: 533 ARDVGVLVGGMDGVDGGFGKGQGCYEMESLRGFDFFPQTGHVEGVAVLRRK 583 >gi|213857922|ref|ZP_03384893.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 97 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 27/75 (36%), Positives = 45/75 (60%), Gaps = 2/75 (2%) Query: 292 FKTIFVDPPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQ 349 F + +DP R+G +++ P I+Y+SCNP +L RD ++++ + + RLA+ D Sbjct: 22 FDKVLLDPARAGATGVMRHIIKLKPIRIVYVSCNPATLARDSEALVNAGYEVTRLAMLDM 81 Query: 350 FPYTRHMECGVLLVR 364 FP+T H+E VL R Sbjct: 82 FPHTGHLESMVLFER 96 >gi|239917806|ref|YP_002957364.1| SAM-dependent methyltransferase, tRNA(uracil-5)-methyltransferase [Micrococcus luteus NCTC 2665] gi|281413702|ref|ZP_06245444.1| SAM-dependent methyltransferase, tRNA(uracil-5)-methyltransferase [Micrococcus luteus NCTC 2665] gi|239839013|gb|ACS30810.1| SAM-dependent methyltransferase, tRNA(uracil-5)-methyltransferase [Micrococcus luteus NCTC 2665] Length = 490 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 51/196 (26%), Positives = 90/196 (45%), Gaps = 10/196 (5%) Query: 175 GRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFSLVLARHFD- 232 G T +R + F Q + +++ VL + G ++ +LY G G FS LA Sbjct: 284 GGTKRFRVTGDGFWQVHQHAPATLVDAVLEDARVEPGQVVADLYGGAGLFSAYLADAVGP 343 Query: 233 --RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY 290 RV +VE ++ + + AR N+ + ++ + + + + E + D + Sbjct: 344 EGRVYSVEASRRASKDARRNL--HEQPQASVLNGPTDKVLGSWLKYPE-RPVADGGLGGA 400 Query: 291 RFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSIL-STTHTIERLALF 347 T+ +DPPR+G + + A I+Y+SC+P S RDL+ L + +ER + Sbjct: 401 ALDTVVLDPPRAGAGRRAIERILALEPGRIVYVSCDPASFARDLAWLRDGGYEVERARVV 460 Query: 348 DQFPYTRHMECGVLLV 363 D +P T H+E LV Sbjct: 461 DLYPDTHHLESVTALV 476 >gi|259502049|ref|ZP_05744951.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus antri DSM 16041] gi|259169962|gb|EEW54457.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus antri DSM 16041] Length = 474 Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 42/152 (27%), Positives = 64/152 (42%), Gaps = 14/152 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L++ Y G G L LA V +EI +V A N N ++N ++E Sbjct: 331 LIDAYAGIGTIGLALAARVKAVRGMEIIPEAVADANANAQLNGISNAHYEVGKAEEVMPR 390 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYP-HILYISCNPDSLCR 330 E +F + VDPPR+GLDD + + + P Y+SC SL R Sbjct: 391 WLAE------------GLQFDALVVDPPRTGLDDELIKQILKVKPRKFAYVSCGMASLAR 438 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLL 362 +L L++ + ++ + D P T E V L Sbjct: 439 NLRRLTSVYHVDYIQPIDMMPQTARCEAVVKL 470 >gi|84685766|ref|ZP_01013662.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Maritimibacter alkaliphilus HTCC2654] gi|84665859|gb|EAQ12333.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Rhodobacterales bacterium HTCC2654] Length = 403 Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 48/180 (26%), Positives = 82/180 (45%), Gaps = 22/180 (12%) Query: 188 TQPN-AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246 T+P + +LE V A++ +++L+ G+G F+L +A VLAVE + A Sbjct: 243 TKPGETALTAAVLEAVGNASR-----VIDLFSGSGTFTLPIAERAG-VLAVEGVDDMLTA 296 Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306 + H + V+ +++ RR + L R + +DPPR+G + Sbjct: 297 --LDAGWRHSKGLHAVKTETRDL---FRRPLLSDEL--------RADAVVIDPPRAGAEA 343 Query: 307 ATVGMV-QAYPHILYISCNPDSLCRDLSILSTT-HTIERLALFDQFPYTRHMECGVLLVR 364 V + P I +SCNP + RD IL+ +T+ L + DQF ++ H+E R Sbjct: 344 QMVEIAASGVPRIAAVSCNPVTFARDAKILTDARYTLNWLVVVDQFRWSPHVELAACFTR 403 >gi|225574546|ref|ZP_03783156.1| hypothetical protein RUMHYD_02623 [Blautia hydrogenotrophica DSM 10507] gi|225038233|gb|EEG48479.1| hypothetical protein RUMHYD_02623 [Blautia hydrogenotrophica DSM 10507] Length = 452 Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 65/217 (29%), Positives = 99/217 (45%), Gaps = 25/217 (11%) Query: 154 RANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD- 212 ++++T+I +DY E L L ++ SF QPN + +L ++ + G D Sbjct: 256 KSDETRILYGQDYFYETLM----GLKFKISTFSFFQPNT-LAAEVLYNIVRSYVGETKDK 310 Query: 213 -LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271 + +LY G G S +LA V+ VEI + +VEAAR N N + N + + Sbjct: 311 VVFDLYSGTGTISQILAEVSKEVVGVEIVEEAVEAARENARMNGLKNCRFIA------GD 364 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLC 329 +R E D+ I +DPPR G+ + + Y I+YISC SL Sbjct: 365 VLRVLDELEEKPDM---------IVLDPPRDGIHPKALPKILDYGVDRIVYISCKVTSLA 415 Query: 330 RDLSILST-THTIERLALFDQFPYTRHMECGVLLVRK 365 RDL + + +E+ DQF T H+E LL RK Sbjct: 416 RDLELFQERGYRVEKCTAVDQFCQTVHVETICLLERK 452 >gi|189055144|dbj|BAG38128.1| unnamed protein product [Homo sapiens] Length = 504 Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 55/223 (24%), Positives = 94/223 (42%), Gaps = 32/223 (14%) Query: 159 KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLEL 216 ++ Y+ E L +L R ++F Q N ML + G+ D LL++ Sbjct: 297 QLLFGEPYIFEELL----SLKIRISPDAFFQINTA-GAEMLYRTVGELTGVNSDTILLDI 351 Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276 CG G L LA+H RVL +E+ + +VE AR+ A N + N + +++ + + Sbjct: 352 CCGTGVIGLSLAQHTSRVLGIELLEQAVEDARWTAAFNGITNSEFHTGQAEKILPGLLKS 411 Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHI---LYISC--------NP 325 +E D S V+P R+GL + ++ + I +++SC N Sbjct: 412 KE-------DGQSI---VAVVNPARAGLHYKVIQAIRNFRAIHTLVFVSCKLHGESTRNV 461 Query: 326 DSLC----RDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 LC +L +++ D FP+T H E +L R Sbjct: 462 IELCCPPDPAKKLLGEPFVLQQAVPVDLFPHTPHCELVLLFTR 504 >gi|119961512|ref|YP_947547.1| tRNA (Uracil-5-)-methyltransferase [Arthrobacter aurescens TC1] gi|119948371|gb|ABM07282.1| putative tRNA (Uracil-5-)-methyltransferase [Arthrobacter aurescens TC1] Length = 454 Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 48/157 (30%), Positives = 70/157 (44%), Gaps = 23/157 (14%) Query: 213 LLELYCGNGNFSLVLARHFD---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269 + +LY G G F+ LA VL+VE A + AR N+ V+IV+ ++ Sbjct: 312 VADLYAGAGLFTAPLADVVGVTGSVLSVEGAPGTSRDARKNLHGE--AQVEIVQGRVEKV 369 Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG--MVQAYPHILYISCNPDS 327 +R R F+ ++ +DPPR+G A V M I Y+SC+P S Sbjct: 370 LH--QRARSFD-------------SVVLDPPRAGAGKAVVKQLMATGPRAIAYVSCDPAS 414 Query: 328 LCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLV 363 RDL +E L FD +P T H+E L+V Sbjct: 415 FARDLGYFHQGGWRLESLRAFDLYPNTHHLETVGLMV 451 >gi|20149688|ref|NP_079193.2| tRNA (uracil-5-)-methyltransferase homolog isoform a [Homo sapiens] gi|269784676|ref|NP_001161442.1| tRNA (uracil-5-)-methyltransferase homolog isoform a [Homo sapiens] gi|269784680|ref|NP_001161444.1| tRNA (uracil-5-)-methyltransferase homolog isoform a [Homo sapiens] gi|74762656|sp|Q96GJ1|TRM2_HUMAN RecName: Full=tRNA (uracil-5-)-methyltransferase homolog; AltName: Full=TRM2 homolog gi|14495658|gb|AAH09437.1| TRMT2B protein [Homo sapiens] gi|18042937|gb|AAH20116.1| TRMT2B protein [Homo sapiens] gi|34783456|gb|AAH34272.1| TRM2 tRNA methyltransferase 2 homolog B (S. cerevisiae) [Homo sapiens] gi|57208528|emb|CAI42997.1| chromosome X open reading frame 34 [Homo sapiens] gi|57208598|emb|CAI42155.1| chromosome X open reading frame 34 [Homo sapiens] gi|57210112|emb|CAI42657.1| chromosome X open reading frame 34 [Homo sapiens] gi|119623236|gb|EAX02831.1| chromosome X open reading frame 34, isoform CRA_a [Homo sapiens] gi|119623241|gb|EAX02836.1| chromosome X open reading frame 34, isoform CRA_a [Homo sapiens] gi|119623243|gb|EAX02838.1| chromosome X open reading frame 34, isoform CRA_a [Homo sapiens] Length = 504 Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 55/223 (24%), Positives = 94/223 (42%), Gaps = 32/223 (14%) Query: 159 KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLEL 216 ++ Y+ E L +L R ++F Q N ML + G+ D LL++ Sbjct: 297 QLLFGEPYIFEELL----SLKIRISPDAFFQINTA-GAEMLYRTVGELTGVNSDTILLDI 351 Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276 CG G L LA+H RVL +E+ + +VE AR+ A N + N + +++ + + Sbjct: 352 CCGTGVIGLSLAQHTSRVLGIELLEQAVEDARWTAAFNGITNSEFHTGQAEKILPGLLKS 411 Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHI---LYISC--------NP 325 +E D S V+P R+GL + ++ + I +++SC N Sbjct: 412 KE-------DGQSI---VAVVNPARAGLHYKVIQAIRNFRAIHTLVFVSCKLHGESTRNV 461 Query: 326 DSLC----RDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 LC +L +++ D FP+T H E +L R Sbjct: 462 IELCCPPDPAKKLLGEPFVLQQAVPVDLFPHTPHCELVLLFTR 504 >gi|167646120|ref|YP_001683783.1| (Uracil-5)-methyltransferase [Caulobacter sp. K31] gi|167348550|gb|ABZ71285.1| (Uracil-5)-methyltransferase [Caulobacter sp. K31] Length = 408 Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 53/232 (22%), Positives = 100/232 (43%), Gaps = 31/232 (13%) Query: 141 ALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTL-------------IYRQIENSF 187 + A+ + R +I + D+ R+T+AG + I SF Sbjct: 186 GVEAKSGGLSADARVRAARIAGEADFA--RVTMAGEMIYMARQPMVKLGPAIVSLPAGSF 243 Query: 188 TQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA 247 Q M+++ + A +G +++LY G G F+ LA V A + + P++ A Sbjct: 244 LQAVPQAEKAMVDFAVEAAQGAS-RIVDLYSGVGTFTFRLA-EIGGVHAADSSAPAIAAL 301 Query: 248 RYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307 + A +K + +++ +RR + LK +D+ +DPPR+G + Sbjct: 302 KG--AVGTATGLKAIIAEARDL---VRRPVLSSELKKVDV-------AVLDPPRAGAYEQ 349 Query: 308 TVGMVQA-YPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHME 357 V + + ++ +SCNP + RD +L +ER+ DQF ++ H+E Sbjct: 350 HVEIANSKVARVVGVSCNPATFARDAKVLIEAGFRLERVLPVDQFLWSPHIE 401 >gi|108799166|ref|YP_639363.1| deoxyribonuclease [Mycobacterium sp. MCS] gi|119868281|ref|YP_938233.1| deoxyribonuclease [Mycobacterium sp. KMS] gi|108769585|gb|ABG08307.1| deoxyribonuclease/rho motif-related TRAM [Mycobacterium sp. MCS] gi|119694370|gb|ABL91443.1| deoxyribonuclease/rho motif-related TRAM [Mycobacterium sp. KMS] Length = 404 Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 45/156 (28%), Positives = 73/156 (46%), Gaps = 23/156 (14%) Query: 215 ELYCGNGNFSLVLARHFD---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271 +LY G G F+ LA RVL V+ ++ A A + ++ VR+ + + Sbjct: 266 DLYGGAGVFAAALADQVGDGGRVLTVDTSR-----AAGRSARAALADLPQVRVVTDSVRR 320 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLC 329 A+ ER D+ + +DPPR+G + + A P I++I C S Sbjct: 321 ALSAERG---AADVAV---------LDPPRAGAGREIIDAISAAGVPRIIHIGCEAASFA 368 Query: 330 RDLSI-LSTTHTIERLALFDQFPYTRHMECGVLLVR 364 RD+ + L +T+E + +FD FP T H+EC +L R Sbjct: 369 RDVGLYLRAGYTVEEVRVFDSFPLTHHVECVAVLTR 404 >gi|73541780|ref|YP_296300.1| 23S rRNA 5-methyluridine methyltransferase [Ralstonia eutropha JMP134] gi|91207810|sp|Q46ZH7|RUMA_CUPPJ RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|72119193|gb|AAZ61456.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Ralstonia eutropha JMP134] Length = 463 Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 46/167 (27%), Positives = 72/167 (43%), Gaps = 23/167 (13%) Query: 210 QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269 Q LL+L+CG GNF+L LA V+ +E ++ A N N + EF Sbjct: 309 QDRLLDLFCGIGNFTLPLATQGRSVMGIEGSEALTTRALANAGYNGL-------AEKTEF 361 Query: 270 TQAMRREREFNRLKDIDIHSY-RFKTIFVDPPRSG-------LDDATVGMVQAYPH-ILY 320 R + DI + RF +DPPR G L + + P I+Y Sbjct: 362 AC-----RNLFEVTAEDIAALGRFDRWLIDPPREGALAVCKALGELSQQGSDVLPQRIVY 416 Query: 321 ISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTRHMECGVLLVRK 365 +SC+P +L RD +L + + + + FP+T H+E + R+ Sbjct: 417 VSCSPATLARDAGLLVHEAGYRLAGAGVVNMFPHTSHVESIAVFERR 463 >gi|42523529|ref|NP_968909.1| RNA methyltransferase [Bdellovibrio bacteriovorus HD100] gi|51316635|sp|Q6MLF5|Y2056_BDEBA RecName: Full=Uncharacterized RNA methyltransferase Bd2056 gi|39575735|emb|CAE79902.1| hypothetical RNA methyltransferase [Bdellovibrio bacteriovorus HD100] Length = 388 Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 52/194 (26%), Positives = 86/194 (44%), Gaps = 17/194 (8%) Query: 179 IYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAV 237 +Y Q+ SFTQP+ N + + + K + L+E G GN + + VLA Sbjct: 203 LYCQVA-SFTQPSHTANKIICDVIYDWVKRYKAQRLIEFGSGIGNLTFPALAGAESVLAC 261 Query: 238 EIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFV 297 EI + S++ ++ N + K+ RR+ + +D +F + Sbjct: 262 EIDELSLQGLERSL-----NELPASMSHLKDRVTIYRRDFQKKLTQDFS----QFDGVLA 312 Query: 298 DPPRSGLDDATVGMVQAYPH-----ILYISCNPDSLCRDLSIL-STTHTIERLALFDQFP 351 +PPRSGL + P +Y+SC P+S+ RDL L + ++ + + DQFP Sbjct: 313 NPPRSGLMGFLNPLKSLAPEQRPEFFIYMSCYPESMARDLVTLQECGYRMQEVYIVDQFP 372 Query: 352 YTRHMECGVLLVRK 365 T H E LL R+ Sbjct: 373 QTDHYEVLGLLQRE 386 >gi|197101097|ref|NP_001124606.1| tRNA (uracil-5-)-methyltransferase homolog [Pongo abelii] gi|75071000|sp|Q5RFM7|TRM2_PONAB RecName: Full=tRNA (uracil-5-)-methyltransferase homolog; AltName: Full=TRM2 homolog gi|55725126|emb|CAH89430.1| hypothetical protein [Pongo abelii] Length = 486 Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 51/205 (24%), Positives = 89/205 (43%), Gaps = 28/205 (13%) Query: 177 TLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRV 234 +L R ++F Q N ML + G+ D LL++ CG G L L++H RV Sbjct: 293 SLKIRISPDAFFQINTA-GAEMLYRTVGELTGVNSDTILLDICCGTGVIGLSLSQHTSRV 351 Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294 L +E+ + +VE AR+ A N + N + +++ + + +E D S Sbjct: 352 LGIELVEQAVEDARWTAAFNGITNSEFHTGRAEKILPGLLKSKE-------DGQSI---V 401 Query: 295 IFVDPPRSGLDDATVGMVQAYPHI---LYISC--------NPDSLC----RDLSILSTTH 339 V+P R+GL + ++ + I +++SC N LC +L Sbjct: 402 AVVNPARAGLHYKVIQAIRNFRAIHTLVFVSCKLHGESTRNVIELCCPPDPAKKLLGEPF 461 Query: 340 TIERLALFDQFPYTRHMECGVLLVR 364 ++++ D FP+T H E +L R Sbjct: 462 VLQQVVPVDLFPHTPHCELVLLFTR 486 >gi|10434333|dbj|BAB14223.1| unnamed protein product [Homo sapiens] Length = 504 Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 52/205 (25%), Positives = 88/205 (42%), Gaps = 28/205 (13%) Query: 177 TLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRV 234 +L R ++F Q N ML + G+ D LL++ CG G L LA+H RV Sbjct: 311 SLKIRISPDAFFQINTA-GAEMLYRTVGELTGVNSDTILLDICCGTGVIGLSLAQHTSRV 369 Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294 L +E+ + +VE AR+ A N + N + +++ + + +E D S Sbjct: 370 LGIELLEQAVEDARWTAAFNGITNSEFHTGQAEKILPGLLKSKE-------DGQSI---V 419 Query: 295 IFVDPPRSGLDDATVGMVQAYPHI---LYISC--------NPDSLC----RDLSILSTTH 339 V+P R+GL + ++ + I +++SC N LC +L Sbjct: 420 AVVNPARAGLHYKVIQAIRNFRAIHTLVFVSCKLHGESTRNVIELCCPPDPAKKLLGEPF 479 Query: 340 TIERLALFDQFPYTRHMECGVLLVR 364 +++ D FP+T H E +L R Sbjct: 480 VLQQAVPVDLFPHTPHCELVLLFTR 504 >gi|126434774|ref|YP_001070465.1| deoxyribonuclease [Mycobacterium sp. JLS] gi|126234574|gb|ABN97974.1| deoxyribonuclease/rho motif-related TRAM [Mycobacterium sp. JLS] Length = 404 Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 45/156 (28%), Positives = 73/156 (46%), Gaps = 23/156 (14%) Query: 215 ELYCGNGNFSLVLARHFD---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271 +LY G G F+ LA RVL V+ ++ A A + ++ VR+ + + Sbjct: 266 DLYGGAGVFAAALADQVGDGGRVLTVDTSR-----AAGRSARAALADLPQVRVVTDSVRR 320 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLC 329 A+ ER D+ + +DPPR+G + + A P I++I C S Sbjct: 321 ALSAERG---AADVAV---------LDPPRAGAGREIIDAISAAGVPRIIHIGCEAASFA 368 Query: 330 RDLSI-LSTTHTIERLALFDQFPYTRHMECGVLLVR 364 RD+ + L +T+E + +FD FP T H+EC +L R Sbjct: 369 RDVGLYLRAGYTVEEVRVFDSFPLTHHVECVAVLTR 404 >gi|319405368|emb|CBI78987.1| RNA methyltransferase [Bartonella sp. AR 15-3] Length = 417 Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 44/155 (28%), Positives = 76/155 (49%), Gaps = 15/155 (9%) Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274 +L+ G G F+L +A+ + V A+E A + AA +K V ++ R Sbjct: 270 DLFAGVGTFTLRMAKKMN-VRAIE--NDGRALANLDQAARIATGLKTVVCEKRDL---FR 323 Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA-YPHILYISCNPDSLCRDLS 333 R L+ D ++ DPPRSG ++ + + ++ ISCNP +L RDLS Sbjct: 324 RPLSAKELECFD-------SVVFDPPRSGAEEQVNELAKTTVARVVAISCNPITLARDLS 376 Query: 334 IL-STTHTIERLALFDQFPYTRHMECGVLLVRKPS 367 +L + +TIE++ DQF ++ H+E L ++ + Sbjct: 377 LLVAGGYTIEKVVPIDQFLWSPHIEVVATLSKRKT 411 >gi|37588964|gb|AAH08067.2| TRMT2B protein [Homo sapiens] Length = 289 Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 52/205 (25%), Positives = 88/205 (42%), Gaps = 28/205 (13%) Query: 177 TLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRV 234 +L R ++F Q N ML + G+ D LL++ CG G L LA+H RV Sbjct: 96 SLKIRISPDAFFQINTA-GAEMLYRTVGELTGVNSDTILLDICCGTGVIGLSLAQHTSRV 154 Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294 L +E+ + +VE AR+ A N + N + +++ + + +E D S Sbjct: 155 LGIELLEQAVEDARWTAAFNGITNSEFHTGQAEKILPGLLKSKE-------DGQSI---V 204 Query: 295 IFVDPPRSGLDDATVGMVQAYPHI---LYISC--------NPDSLC----RDLSILSTTH 339 V+P R+GL + ++ + I +++SC N LC +L Sbjct: 205 AVVNPARAGLHYKVIQAIRNFRAIHTLVFVSCKLHGESTRNVIELCCPPDPAKKLLGEPF 264 Query: 340 TIERLALFDQFPYTRHMECGVLLVR 364 +++ D FP+T H E +L R Sbjct: 265 VLQQAVPVDLFPHTPHCELVLLFTR 289 >gi|239814807|ref|YP_002943717.1| 23S rRNA 5-methyluridine methyltransferase [Variovorax paradoxus S110] gi|239801384|gb|ACS18451.1| RNA methyltransferase, TrmA family [Variovorax paradoxus S110] Length = 482 Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 51/200 (25%), Positives = 80/200 (40%), Gaps = 24/200 (12%) Query: 175 GRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFD 232 G T+ ++ + FTQ N IN ++ L +Q D +++ +CG GNF+L LA Sbjct: 282 GVTMPFKPTD--FTQVNPHINRALVGKALRLLD-VQADERVIDWFCGLGNFTLPLASRAR 338 Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292 VL +E + V A N + N +S+ F F + + Sbjct: 339 EVLGIEGSDTLVARASDNFSKNQPATSARRALSATRFVA----RNLFEMTPAMLVADGSA 394 Query: 293 KTIFVDPPRSGLDDATVGMVQAY-------------PHILYISCNPDSLCRDLSIL--ST 337 VDPPR G M + I+Y+SCNP +L RD +L Sbjct: 395 DKWLVDPPREGAFALAKAMADLHLQPELRTDGWTPPKRIVYVSCNPSTLARDAGLLVHQA 454 Query: 338 THTIERLALFDQFPYTRHME 357 + + + FP+T H+E Sbjct: 455 GYRCTFAGVINMFPHTAHVE 474 >gi|269784678|ref|NP_001161443.1| tRNA (uracil-5-)-methyltransferase homolog isoform b [Homo sapiens] gi|57208529|emb|CAI42998.1| chromosome X open reading frame 34 [Homo sapiens] gi|57208599|emb|CAI42156.1| chromosome X open reading frame 34 [Homo sapiens] gi|57210113|emb|CAI42658.1| chromosome X open reading frame 34 [Homo sapiens] gi|119623242|gb|EAX02837.1| chromosome X open reading frame 34, isoform CRA_e [Homo sapiens] Length = 459 Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 52/205 (25%), Positives = 88/205 (42%), Gaps = 28/205 (13%) Query: 177 TLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRV 234 +L R ++F Q N ML + G+ D LL++ CG G L LA+H RV Sbjct: 266 SLKIRISPDAFFQINTA-GAEMLYRTVGELTGVNSDTILLDICCGTGVIGLSLAQHTSRV 324 Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294 L +E+ + +VE AR+ A N + N + +++ + + +E D S Sbjct: 325 LGIELLEQAVEDARWTAAFNGITNSEFHTGQAEKILPGLLKSKE-------DGQSI---V 374 Query: 295 IFVDPPRSGLDDATVGMVQAYPHI---LYISC--------NPDSLC----RDLSILSTTH 339 V+P R+GL + ++ + I +++SC N LC +L Sbjct: 375 AVVNPARAGLHYKVIQAIRNFRAIHTLVFVSCKLHGESTRNVIELCCPPDPAKKLLGEPF 434 Query: 340 TIERLALFDQFPYTRHMECGVLLVR 364 +++ D FP+T H E +L R Sbjct: 435 VLQQAVPVDLFPHTPHCELVLLFTR 459 >gi|300870044|ref|YP_003784915.1| TrmA-family RNA methyltransferase [Brachyspira pilosicoli 95/1000] gi|300687743|gb|ADK30414.1| RNA methyltransferase (TrmA-family) [Brachyspira pilosicoli 95/1000] Length = 390 Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 43/154 (27%), Positives = 75/154 (48%), Gaps = 34/154 (22%) Query: 212 DLLELYCGNGNFSLVLARHFD------RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265 +++ELY G+G FS+ + + ++++ EI+ +V+ A+ I++ Sbjct: 255 NIVELYAGSGFFSVAIKNKLESLNIDYKLISSEISSDAVKIAK-----------DIIKED 303 Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV--GMVQAYPHILYISC 323 + E LK I+ Y ++FVDPPR GLD + + I+YISC Sbjct: 304 ASE------------TLKKIN---YNVDSLFVDPPREGLDKKVIENIIRIKPKKIIYISC 348 Query: 324 NPDSLCRDLSILSTTHTIERLALFDQFPYTRHME 357 NP + RD+++L + + L + D FP T H+E Sbjct: 349 NPMTFARDINLLKEYYQLIDLNIIDMFPDTYHIE 382 >gi|147797617|emb|CAN65004.1| hypothetical protein VITISV_023490 [Vitis vinifera] Length = 1255 Score = 56.6 bits (135), Expect = 7e-06, Method: Composition-based stats. Identities = 44/175 (25%), Positives = 72/175 (41%), Gaps = 28/175 (16%) Query: 176 RTLIYRQIENSFTQPNA--------GINVHMLEWVLAATKGIQGD----LLELYCGNGNF 223 R L ++ NSF Q N + +L ++ G++GD +L+L+CG G Sbjct: 351 RGLTFQISANSFFQTNTHQQILRLYNVQAEVLYKLIEDCAGLRGDGSEIVLDLFCGTGTI 410 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 L L+R V E+ +V AR N N + N + E + N++ Sbjct: 411 GLTLSRRVRHVYGYEVVAQAVSDARRNAKLNGICNATFI-------------EGDLNKIG 457 Query: 284 DIDIHSY-RFKTIFVDPPRSGLD--DATVGMVQAYPHILYISCNPDSLCRDLSIL 335 + + + + DP R G+ + P I+Y+SCNP + RDL L Sbjct: 458 ENFGKDFPKPDVVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYL 512 >gi|330981853|gb|EGH79956.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 84 Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 26/63 (41%), Positives = 36/63 (57%) Query: 1 MSGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60 MS Y++QL EK RLR+++ F P Q+F S HYR+RAEF +W + Y+ Sbjct: 1 MSVPFDPASYDRQLEEKTVRLRELLAPFDAPEPQVFDSPREHYRLRAEFRLWREDQKRYY 60 Query: 61 IMF 63 MF Sbjct: 61 AMF 63 >gi|39943740|ref|XP_361407.1| hypothetical protein MGG_03881 [Magnaporthe oryzae 70-15] gi|145014577|gb|EDJ99145.1| hypothetical protein MGG_03881 [Magnaporthe oryzae 70-15] Length = 612 Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 49/174 (28%), Positives = 77/174 (44%), Gaps = 31/174 (17%) Query: 212 DLLELYCGNGNFSLVLARHF------DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265 +L++ YCG+G FS+ A F R + ++I + E A N N+ + K Sbjct: 438 NLIDAYCGSGLFSITCAPLFISDEVKGRAIGIDIDGQATERAGLNAKLNNYPDGKC---- 493 Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA--TVGMVQAYPHILYISC 323 EF +A + F +L D + + +DPPR G D + T +V ++Y+SC Sbjct: 494 --EFIEA-DAPKLFQKL---DGFNPDETAVVIDPPRKGCDVSFLTQLLVFKPKRLVYVSC 547 Query: 324 NPDSLCRDLSIL-------------STTHTIERLALFDQFPYTRHMECGVLLVR 364 N + RD+ IL + IE + FD FP T H+E +L R Sbjct: 548 NVHTQARDVGILVRGYVDGLPAPVGGARYKIESVRGFDLFPQTSHVEGVAVLTR 601 >gi|307700713|ref|ZP_07637738.1| putative 23S rRNA (uracil-5-)-methyltransferase RumB [Mobiluncus mulieris FB024-16] gi|307613708|gb|EFN92952.1| putative 23S rRNA (uracil-5-)-methyltransferase RumB [Mobiluncus mulieris FB024-16] Length = 450 Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 53/216 (24%), Positives = 84/216 (38%), Gaps = 61/216 (28%) Query: 200 EWVLAATKGIQGDLLELYCGNGNFSLVLARHFD----------------RVLAVEIAKPS 243 EW G+ + +LYCG G F +A +V+ VE+A + Sbjct: 246 EWAARLRPGL---VWDLYCGVGGFGFAVADSLGANPSPGEAGGGEPGSCQVIGVELAGAA 302 Query: 244 VEAARYN------------------------IAANHVNNVKIVRMSSKEFTQAMR----- 274 +E A++ +N +++ R+ SK +R Sbjct: 303 IEGAKHAAQLQRATPGQAPHENQTTQVTGGATGSNTTDDITTNRVISKPAANGLRFITAD 362 Query: 275 ---REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLC 329 R +L D+ + V+PPR GL + ++ PH++Y SC SL Sbjct: 363 AGKWIRNQKKLVTPDL-------LVVNPPRRGLGNELSKWIEKSEIPHVIYSSCYQPSLV 415 Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 +L + + E L L D FP+TRH+E VLL RK Sbjct: 416 DNLHRMKSYRVTE-LKLVDMFPHTRHVETIVLLSRK 450 >gi|319784705|ref|YP_004144181.1| (uracil-5)-methyltransferase [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317170593|gb|ADV14131.1| (Uracil-5)-methyltransferase [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 413 Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 45/154 (29%), Positives = 76/154 (49%), Gaps = 16/154 (10%) Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274 +L+ G G+F+L LA + V AVE ++ A + + +K V ++ R Sbjct: 270 DLFAGCGSFALRLAAKSE-VHAVEGDAAALSA--LDRGSRFATGLKRVTGERRDL---FR 323 Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA-YPHILYISCNPDSLCRDLS 333 R F L D + DPPR+G +D + + ++ P++ +SCNP +L RDL Sbjct: 324 RPLTFKELNAFD-------GVVFDPPRAGAEDQSKQIARSDVPYVAAVSCNPVTLARDLR 376 Query: 334 IL-STTHTIERLALFDQFPYTRHMECGVLLVRKP 366 IL + ++ + DQF ++ H+E V L+ KP Sbjct: 377 ILIDGGYALKSVTPIDQFLWSPHVE-AVALLEKP 409 >gi|240850084|ref|YP_002971477.1| RNA methyltransferase [Bartonella grahamii as4aup] gi|240267207|gb|ACS50795.1| RNA methyltransferase [Bartonella grahamii as4aup] Length = 417 Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 40/148 (27%), Positives = 74/148 (50%), Gaps = 15/148 (10%) Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271 + ++L+ G G F+L +A+ + V AVE + ++ N AA +K V ++ Sbjct: 267 NAVDLFSGIGTFTLRIAKKMN-VHAVENNEDALR--NLNTAARFATGLKTVTCEKRDL-- 321 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA-YPHILYISCNPDSLCR 330 R L+ F+++ DPPR+G + + + ++ ISCNP + R Sbjct: 322 -FRHPLSVKELEG-------FESVVFDPPRAGAEQQVRELAKTTVSRVVAISCNPTTFAR 373 Query: 331 DLSIL-STTHTIERLALFDQFPYTRHME 357 DLS+L + +T+E++ DQF ++ H+E Sbjct: 374 DLSLLVAGGYTVEKIIPIDQFLWSPHVE 401 >gi|326773475|ref|ZP_08232758.1| tRNA (Uracil-5-)-methyltransferase [Actinomyces viscosus C505] gi|326636705|gb|EGE37608.1| tRNA (Uracil-5-)-methyltransferase [Actinomyces viscosus C505] Length = 465 Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 43/159 (27%), Positives = 75/159 (47%), Gaps = 17/159 (10%) Query: 213 LLELYCGNGNFSLVLAR---HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269 +LELY G G F+L LA V+++E + +V AR + ++ R++S Sbjct: 318 VLELYSGAGLFTLPLAALVGSGGEVVSLEGNEQAVRDARRTL-----HDQPTARLASGRV 372 Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDS 327 + RE + + R + +DPPR G + V A I+ ++C+P + Sbjct: 373 SARSVRELAGS------LTGGRPDVVVLDPPRQGAGREVIEAVGALGAERIVLVACDPAA 426 Query: 328 LCRDL-SILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 L RDL ++L + + + ++ D FP+T H E +L R Sbjct: 427 LARDLGTLLRSGYALGSMSALDMFPHTHHFETIAVLERS 465 >gi|227875217|ref|ZP_03993359.1| 23S rRNA methyluridine methyltransferase [Mobiluncus mulieris ATCC 35243] gi|227844122|gb|EEJ54289.1| 23S rRNA methyluridine methyltransferase [Mobiluncus mulieris ATCC 35243] Length = 418 Score = 56.2 bits (134), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 52/216 (24%), Positives = 84/216 (38%), Gaps = 61/216 (28%) Query: 200 EWVLAATKGIQGDLLELYCGNGNFSLVLARHFD----------------RVLAVEIAKPS 243 EW G+ + +LYCG G F +A +V+ VE+A + Sbjct: 214 EWAARLRPGL---VWDLYCGVGGFGFAVADSLGANPSPGEAGGGEPGSCQVIGVELAGAA 270 Query: 244 VEAARY------------------------NIAANHVNNVKIVRMSSKEFTQAMR----- 274 +E A++ +N +N+ ++ SK +R Sbjct: 271 IEGAKHAAQLQRATPGQAPHENQTTQVTGDTTGSNTTDNITTNQVISKPAANGLRFITAD 330 Query: 275 ---REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLC 329 + +L D+ + V+PPR GL + ++ PH++Y SC SL Sbjct: 331 AGKWIKNQKKLVTPDL-------LVVNPPRRGLGNELSKWIEKSEIPHVIYSSCYQPSLV 383 Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 +L + + E L L D FP+TRH+E VLL RK Sbjct: 384 DNLHRMKSYRVTE-LKLVDMFPHTRHVETIVLLSRK 418 >gi|319898605|ref|YP_004158698.1| enzyme [Bartonella clarridgeiae 73] gi|319402569|emb|CBI76114.1| putative enzyme [Bartonella clarridgeiae 73] Length = 417 Score = 56.2 bits (134), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 57/203 (28%), Positives = 94/203 (46%), Gaps = 29/203 (14%) Query: 170 RLTVAGRTLIYRQ----------IEN---SFTQPNAGINVHMLEWVLAATKGIQGDLLEL 216 RL+V G L+ R+ +E+ F Q M + +L K + + +L Sbjct: 213 RLSVEGEVLVEREKPLIHFGDVCVESPIGGFLQATFEAETIMGDIILTHLKKAK-NAADL 271 Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276 + G G F+L +A+ + V A+E ++ A + AA +K V ++ RR Sbjct: 272 FAGVGTFTLRMAKKMN-VHAIENDGKAL--ANLDQAARIATGLKTVVCEKRDL---FRRP 325 Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA-YPHILYISCNPDSLCRDLSIL 335 L+ D +I +PPRSG + + + ++ ISCNP +L RDLSIL Sbjct: 326 LSAKELECFD-------SIVFNPPRSGAEKQVNELAKTTVVRVVAISCNPVTLARDLSIL 378 Query: 336 ST-THTIERLALFDQFPYTRHME 357 T +TIE++ DQF ++ H+E Sbjct: 379 VTGGYTIEKVVPIDQFLWSPHIE 401 >gi|297708304|ref|XP_002830909.1| PREDICTED: LOW QUALITY PROTEIN: tRNA (uracil-5-)-methyltransferase homolog A-like [Pongo abelii] Length = 625 Score = 56.2 bits (134), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 48/170 (28%), Positives = 76/170 (44%), Gaps = 25/170 (14%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +L++ CG L LAR RV+ VE+ +VE AR N N ++NV+ +++ A Sbjct: 436 VLDVCCGFRAIGLALARKVKRVIGVELCPEAVEDARVNAQDNELSNVEFHCGRAEDLVPA 495 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH---ILYISCNPDS-- 327 + +RL + +DPPR+GL + ++ + +LY+SCNP + Sbjct: 496 L-----VSRLASQHL------VAILDPPRAGLHSKVILAIRRAENLRRLLYVSCNPRAAM 544 Query: 328 -----LCRDLS--ILSTTHTIERLALFDQFPYTRHMECGVLL--VRKPSG 368 LCR S + + D FP T H E +L V P+G Sbjct: 545 GNFVDLCRAPSNRVKGIPFRPVKAVAVDLFPQTPHCEMLILFERVEHPNG 594 >gi|227821072|ref|YP_002825042.1| RNA methyltransferase [Sinorhizobium fredii NGR234] gi|227340071|gb|ACP24289.1| RNA methyltransferase [Sinorhizobium fredii NGR234] Length = 415 Score = 56.2 bits (134), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 52/176 (29%), Positives = 82/176 (46%), Gaps = 16/176 (9%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 +FTQ M + VL G + +L+ G G F+L +AR RV AVE ++ Sbjct: 248 GAFTQATRPAEEAMAKLVLGHI-GKAKRVADLFAGIGTFALRIART-ARVHAVEGEDKAL 305 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 +A + AA + +K V + ++ RR LK F + DPPR+G Sbjct: 306 KA--LDFAARNTQGLKPVTVEKRDL---FRRPMMAQELK-------VFDAVVFDPPRAGA 353 Query: 305 DDATVGMVQA-YPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMEC 358 + + ++ I +SCNP +L RDLSIL + + I + DQF ++ H+E Sbjct: 354 EAQCHELARSGVKKIAAVSCNPVTLARDLSILVAAGYRIRSVTPIDQFLWSAHVEA 409 >gi|330817172|ref|YP_004360877.1| RNA methyltransferase, TrmA family protein [Burkholderia gladioli BSR3] gi|327369565|gb|AEA60921.1| RNA methyltransferase, TrmA family protein [Burkholderia gladioli BSR3] Length = 464 Score = 56.2 bits (134), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 52/182 (28%), Positives = 76/182 (41%), Gaps = 22/182 (12%) Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 FTQ N IN ++ L + D +L+L+CG GNF+L LAR V+ +E + Sbjct: 286 FTQVNHQINRVLVGRALRLLAPRREDRVLDLFCGIGNFTLPLARLSREVVGIEGSDALTT 345 Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG-- 303 A N N V+ F E + L+ + F VDPPR G Sbjct: 346 RALANAKENGVDG-------HTSFACRNLFEVTADDLRALGA----FDKFLVDPPREGAL 394 Query: 304 ------LDDATVGMVQAYPHILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTRH 355 + A G I+Y+SCNP +L RD +L + + + + FP T H Sbjct: 395 AVSKALAEIAQSGEGPLPKRIVYVSCNPATLARDAGLLVHEAGYRLRGAGVVNMFPNTSH 454 Query: 356 ME 357 +E Sbjct: 455 VE 456 >gi|319792730|ref|YP_004154370.1| RNA methyltransferase, trma family [Variovorax paradoxus EPS] gi|315595193|gb|ADU36259.1| RNA methyltransferase, TrmA family [Variovorax paradoxus EPS] Length = 478 Score = 56.2 bits (134), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 53/205 (25%), Positives = 81/205 (39%), Gaps = 24/205 (11%) Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVL 227 RL G T+ ++ + FTQ N IN ++ L +Q D +++ +CG GNF+L L Sbjct: 273 RLPEFGVTMPFKPTD--FTQVNPHINRALVGKALRLLD-VQSDERVIDWFCGLGNFTLPL 329 Query: 228 ARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDI 287 A VL +E + V A N+ N +S F F + + Sbjct: 330 ASRAREVLGIEGSDTLVARATDNLKKNEPATSARRALSPTTFVA----RNLFEMTPAMLV 385 Query: 288 HSYRFKTIFVDPPRSGLDDATVGMVQAYPH-------------ILYISCNPDSLCRDLSI 334 VDPPR G M + I+Y+SCNP +L RD + Sbjct: 386 ADGSADKWLVDPPREGAFALAKAMADLHQQPELRTDGWTPPKRIVYVSCNPSTLARDAGL 445 Query: 335 L--STTHTIERLALFDQFPYTRHME 357 L + + + FP+T H+E Sbjct: 446 LVHQAGYRCTFAGVVNMFPHTAHVE 470 >gi|229819942|ref|YP_002881468.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Beutenbergia cavernae DSM 12333] gi|229565855|gb|ACQ79706.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Beutenbergia cavernae DSM 12333] Length = 376 Score = 56.2 bits (134), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 55/205 (26%), Positives = 90/205 (43%), Gaps = 33/205 (16%) Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHM----LEWV--LAATKGIQGDLLELYCGNGNF 223 R+ V G L R SF Q N + + +W+ LA + +++LYCG G F Sbjct: 194 RMAVNGLDLHLR--PQSFFQTNTAVAAALYREATDWIDELAPSS-----VVDLYCGVGPF 246 Query: 224 SL-VLARHFDR-VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281 +L AR +R VL VE + ++ +A ++ A + N + F + Sbjct: 247 ALHAAARDTERRVLGVETSAEAIASATHSAADAGLANAR--------FAVGDATAFAADD 298 Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTH 339 D+ + V+PPR G+ ++ H++Y SC+ SL RDL+++ + Sbjct: 299 DGVPDV-------VIVNPPRRGIGPDLAAWLERSGVRHVVYSSCSSASLARDLAVMPSLR 351 Query: 340 TIERLALFDQFPYTRHMECGVLLVR 364 + R + D FP T H E LL R Sbjct: 352 PV-RARVLDMFPQTAHYEVLTLLER 375 >gi|83945409|ref|ZP_00957757.1| possible hypothetical RNA methyltransferase [Oceanicaulis alexandrii HTCC2633] gi|83851243|gb|EAP89100.1| possible hypothetical RNA methyltransferase [Oceanicaulis alexandrii HTCC2633] Length = 423 Score = 56.2 bits (134), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 63/232 (27%), Positives = 98/232 (42%), Gaps = 35/232 (15%) Query: 141 ALHARKYQIQLIGRANKTKICLDRDYVDE---RLTVAGRTLIYRQIENSFTQPNAGINVH 197 +L R+ +L G+ N T++ + D + E + G T + F Q A Sbjct: 204 SLALREAGAELAGKYNWTRVTIGGDPLIEFEAPVVKFGDTKVT-PAPGGFLQATAEGEAI 262 Query: 198 MLEWVLAATKGIQGD----LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAA 253 + +V A K ++G +L+ G G F+L LAR VLAVE + A AA Sbjct: 263 LAGFVDEAVKSLEGKGPFKAADLFAGAGAFALRLARTMP-VLAVEGESGLLHA--LQRAA 319 Query: 254 NHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG-------LDD 306 +K V A R+ + ++ Y + +DPPR+G L D Sbjct: 320 QRTPGLKPV--------DARVRDLALEPITPKELEGYSL--VVIDPPRAGAKAQAERLSD 369 Query: 307 ATVGMVQAYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHME 357 + V P I+ ISCNP + RD +IL + + + DQF +T H+E Sbjct: 370 SMV------PVIVSISCNPATFARDAAILIEGGYRMGPVTPVDQFKWTGHVE 415 >gi|306818479|ref|ZP_07452202.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Mobiluncus mulieris ATCC 35239] gi|304648652|gb|EFM45954.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Mobiluncus mulieris ATCC 35239] Length = 418 Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 55/211 (26%), Positives = 81/211 (38%), Gaps = 51/211 (24%) Query: 200 EWVLAATKGIQGDLLELYCGNGNFSLVLARHFD----------------RVLAVEIAKPS 243 EW G+ + +LYCG G F +A +V+ VE+A + Sbjct: 214 EWAARLRPGL---VWDLYCGVGGFGFAVADSLGANPSPGEAGGGEPGSCQVIGVELAGAA 270 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH---------SYRFKT 294 +E A++ AA + TQ N DI + RF T Sbjct: 271 IEGAKH--AAQLQRATPGQAPHENQTTQVTGDTTGSNTTDDITTNQVISKPAANGLRFIT 328 Query: 295 ------------------IFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSI 334 + V+PPR GL + ++ PH++Y SC SL +L Sbjct: 329 ADAGKWIKNQKKLVTPDLLVVNPPRRGLGNELSKWIEKSEIPHVIYSSCYQPSLVDNLHR 388 Query: 335 LSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 + + + I L L D FP+TRH+E VLL RK Sbjct: 389 MKS-YRITELKLVDMFPHTRHVETIVLLSRK 418 >gi|256827042|ref|YP_003151001.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Cryptobacterium curtum DSM 15641] gi|256583185|gb|ACU94319.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Cryptobacterium curtum DSM 15641] Length = 444 Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 53/184 (28%), Positives = 77/184 (41%), Gaps = 21/184 (11%) Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLA 236 YR SF Q N ++ V+ + + +LY G G F+L LA V+A Sbjct: 271 FTYRISAPSFFQVNTAQAEQLISLVIEGLDITETSHVADLYSGAGTFTLPLADRAGEVIA 330 Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296 VE A SV R N A VR RE + +D + Sbjct: 331 VESASSSVRDLRRN--AETAGVWVDVRGGDSA--------RELAHMGHLD-------ALV 373 Query: 297 VDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYT 353 VDPPR+GL +A + + + Y+SC P + RD++ L+ +T+ R+ D FP T Sbjct: 374 VDPPRAGLTEAAIAGIAQAQPARLAYVSCEPATWARDVARLADYGYTLTRVTPVDLFPQT 433 Query: 354 RHME 357 H E Sbjct: 434 YHCE 437 >gi|99082734|ref|YP_614888.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Ruegeria sp. TM1040] gi|99039014|gb|ABF65626.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Ruegeria sp. TM1040] Length = 414 Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 52/195 (26%), Positives = 90/195 (46%), Gaps = 32/195 (16%) Query: 183 IENSFTQPNAGINV------------HMLEWVLAATKGIQGD---LLELYCGNGNFSLVL 227 +E S TQ G NV ++AA + GD +++L+ G G FSL L Sbjct: 224 MEQSPTQAFGGANVCPPPGAFLQATPEGESALVAAVREGVGDARRIVDLFAGAGTFSLPL 283 Query: 228 ARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE-FTQAMRRE--REFNRLKD 284 A+ + V AVE + ++A + +K V +++ F + E R+F ++ D Sbjct: 284 AQTAE-VHAVEGEREMMQA--LELGWRKAQGLKKVTTETRDLFRNPLLVEDLRQFGKVYD 340 Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMVQA-YPHILYISCNPDSLCRDLSIL-STTHTIE 342 + +DPPR+G + + +A P I Y+SCNP + RD +L + + + Sbjct: 341 ---------AVVIDPPRAGAEAQIAQLAKAKLPLISYVSCNPVTFARDAEVLVAAGYKLN 391 Query: 343 RLALFDQFPYTRHME 357 + + DQF ++ H E Sbjct: 392 WVQVVDQFRWSSHTE 406 >gi|297585038|ref|YP_003700818.1| TrmA family RNA methyltransferase [Bacillus selenitireducens MLS10] gi|297143495|gb|ADI00253.1| RNA methyltransferase, TrmA family [Bacillus selenitireducens MLS10] Length = 462 Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 85/389 (21%), Positives = 163/389 (41%), Gaps = 55/389 (14%) Query: 10 YEQQLAEKVDRLRQMMLAF-QVPNLQ------IFRSEPIHYRMRAEFHIWHDGDD-LYHI 61 YE+QL K + L Q + ++P + I P HYR +++ + DD + Sbjct: 95 YERQLQAKKELLEQAFSRYTKIPPHKLVIHDTIGMDNPWHYRNKSQMQVGQTEDDTVIAG 154 Query: 62 MFDQQTKERMRIDYFMPGSLLINALMIEMMATI-----------RLEPLLRAKLFQIDYL 110 ++ + + + ID + L N + E+ I R + L+R+ + + + Sbjct: 155 LYAADSHDLVDIDECIVQHPLTNEVNRELKRIISDLKLSIYDKERKKGLVRSLVVRTAF- 213 Query: 111 TSQSDQAIVTLIYHRLLDDAWRECAIRLRDA--------LHARKYQIQLIGRANKTKICL 162 ++D+ +TL+ + R+++A L+ L+ +TK Sbjct: 214 --ETDEWQLTLVISKKSFPKQDVFVARVKEAFPSVTSISLNVNPSDTPLV-FGEQTKTIE 270 Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGN 220 + ERL L Y+ SF Q N +L ++ G + +++ YCG Sbjct: 271 GESSIRERLG----ELDYQLAPESFFQLNPA-QTKVLYDIVKKMAGFKATDRVVDAYCGV 325 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G+ + A + ++I + +V AR N A + N ++++ ++E Sbjct: 326 GSIGIWAASEAGELRGMDITEAAVANARRNAAEAGIANAHYETGTAEDILMKWQKE---- 381 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDA---TVGMVQAYPHILYISCNPDSLCRDLSILST 337 + +I VDPPRSGLD TVG+++ ++Y+SCNP +L ++ L Sbjct: 382 --------GFTADSIIVDPPRSGLDRTLIETVGVLKPK-QLIYVSCNPSTLAKNADELGK 432 Query: 338 -THTIERLALFDQFPYTRHMECGVLLVRK 365 + I+ + D FP T H+E ++ R+ Sbjct: 433 YGYRIKDVQPVDMFPQTSHVEAVTVMYRE 461 >gi|94985877|ref|YP_605241.1| (Uracil-5)-methyltransferase [Deinococcus geothermalis DSM 11300] gi|94556158|gb|ABF46072.1| (Uracil-5)-methyltransferase [Deinococcus geothermalis DSM 11300] Length = 410 Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 42/154 (27%), Positives = 69/154 (44%), Gaps = 21/154 (13%) Query: 214 LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273 ++LY G+G LA HF RV ++ A ++ R +A + NV Sbjct: 275 VDLYGGSGAIGRHLAPHFARVTVLDTAAEALVRGRQAVAVSGERNVSY------------ 322 Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRD 331 R + RL ++ I VDPPR+GLD+ + A ++Y+SC+P + RD Sbjct: 323 -RSGDAARLGELST-----DVIVVDPPRAGLDEGARDHIHASTADRLVYVSCDPATWARD 376 Query: 332 LSILSTTH-TIERLALFDQFPYTRHMECGVLLVR 364 + L+ + + D +P T H+E +L R Sbjct: 377 VGDLTRRGWRLGEVTPHDFYPQTSHVEVVSVLER 410 >gi|254464905|ref|ZP_05078316.1| (Uracil-5)-methyltransferase [Rhodobacterales bacterium Y4I] gi|206685813|gb|EDZ46295.1| (Uracil-5)-methyltransferase [Rhodobacterales bacterium Y4I] Length = 384 Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 47/176 (26%), Positives = 81/176 (46%), Gaps = 14/176 (7%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 +F Q +L V T+G + +++L+ G G F+L LA+ + V AVE + V Sbjct: 211 GAFLQATKDGEAALLAAVQEITRGAK-RIVDLFAGCGTFALPLAQTAE-VHAVEGERDMV 268 Query: 245 EAARYNIAANHVNNVKIVRMSSKE-FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 A + +K V +++ F + E D++ F +DPPR+G Sbjct: 269 AA--LDAGWRKAKGLKKVTTETRDLFRNPLLPE-------DLNPFGAAFDAAVIDPPRAG 319 Query: 304 LDDATVGMVQA-YPHILYISCNPDSLCRDLSILSTT-HTIERLALFDQFPYTRHME 357 + + +A P I Y+SCNP S RD L+ + + + + DQF ++ H+E Sbjct: 320 AEAQVAQLAKARTPVIAYVSCNPVSFARDAKTLAAAGYDLGWVQVVDQFRWSAHIE 375 >gi|308234999|ref|ZP_07665736.1| TRAM domain protein [Gardnerella vaginalis ATCC 14018] gi|311114960|ref|YP_003986181.1| hypothetical protein HMPREF0421_21076 [Gardnerella vaginalis ATCC 14019] gi|310946454|gb|ADP39158.1| hypothetical RNA methyltransferase [Gardnerella vaginalis ATCC 14019] Length = 474 Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 56/225 (24%), Positives = 93/225 (41%), Gaps = 39/225 (17%) Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD------LLELYCGNGNFSLVLAR 229 RT Y F Q + H++ +VL + G L +LY G+G F++ LA Sbjct: 252 RTFDYDVDARGFWQIHRAAPEHLVNYVLGLVRSALGGRTKNTVLWDLYSGSGLFTIPLAT 311 Query: 230 HFD------------------------RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265 + RVL++E A +V+ AR NI ++ +V Sbjct: 312 LANVGGDSSSAVGALGTTGTFGSAEPARVLSIEGAPIAVKNARRNIGRAGLSR-DVVEAL 370 Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFK---TIFVDPPRSGLDDATVGMV--QAYPHILY 320 + Q + + F K I RF + +DPPR+G + ++Y Sbjct: 371 QGDVAQTLESQ-VFKASKSSKI-VRRFAHPDVVVLDPPRAGAKAQVCKQIAKSGARAVVY 428 Query: 321 ISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364 ++C+P SL RD+ ++++ L FD +P T H+E VL+ R Sbjct: 429 VACDPTSLARDVGTFREFGYSVQSLRAFDLYPETHHVESVVLMSR 473 >gi|301066818|ref|YP_003788841.1| tRNA (uracil-5-)-methyltransferase-like protein [Lactobacillus casei str. Zhang] gi|300439225|gb|ADK18991.1| tRNA (uracil-5-)-methyltransferase related enzyme [Lactobacillus casei str. Zhang] Length = 455 Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 53/215 (24%), Positives = 91/215 (42%), Gaps = 23/215 (10%) Query: 155 ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATK---GIQG 211 ++++ Y+ E T+ GRT ++ +F Q N + + LAA G Sbjct: 258 GKESRLLAGLPYIQE--TLLGRT--FQLSPQAFLQLNPKQTETL--YTLAAKALDLGPHD 311 Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271 L++ YCG G + LA+ + ++ + A+ N AN + N +++ Sbjct: 312 TLIDAYCGIGTVGISLAKGNQPIYGMDTIAEGIADAKANAKANGLTNAHYSVGKAEDIFP 371 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLC 329 +E + + VDPPR+GL+ A + + P +YISCNP +L Sbjct: 372 KWVQE------------GMKPDAVIVDPPRAGLERAFIDALLELDPPKFVYISCNPSTLA 419 Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 RDL L+ + ++ + D FP T E V R Sbjct: 420 RDLVFLTKRYKVDWIQSIDMFPQTARCEAVVKFTR 454 >gi|297242735|ref|ZP_06926673.1| SAM-dependent methyltransferase [Gardnerella vaginalis AMD] gi|296888946|gb|EFH27680.1| SAM-dependent methyltransferase [Gardnerella vaginalis AMD] Length = 478 Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 56/225 (24%), Positives = 92/225 (40%), Gaps = 39/225 (17%) Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD------LLELYCGNGNFSLVLAR 229 RT Y F Q + H++ +VL + G L +LY G+G F++ LA Sbjct: 255 RTFDYDVDARGFWQIHRAAPEHLVNYVLGLVRSALGGRIKNTVLWDLYSGSGLFTIPLAT 314 Query: 230 HFD------------------------RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265 + RVL++E A +V+ AR NI + +V Sbjct: 315 LANIGGDSSSAVGAIGTTGAFGSAEPARVLSIEGAPIAVKNARRNIGRAGLGR-DVVEAL 373 Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFK---TIFVDPPRSGLDDATVGMV--QAYPHILY 320 + +Q + + F K I RF + +DPPR+G + ++Y Sbjct: 374 EGDVSQTLESQ-VFKASKSSKI-VRRFAHPDVVVLDPPRAGAKAQVCKQIAKSGARSVVY 431 Query: 321 ISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364 ++C+P SL RD+ + ++ L FD +P T H+E VL+ R Sbjct: 432 VACDPTSLARDVGTFRELGYNVQSLRAFDIYPNTHHVESVVLMSR 476 >gi|189218150|ref|YP_001938792.1| SAM-dependent RNA methyltransferase, TrmA family [Methylacidiphilum infernorum V4] gi|189185008|gb|ACD82193.1| SAM-dependent RNA methyltransferase, TrmA family [Methylacidiphilum infernorum V4] Length = 361 Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 48/189 (25%), Positives = 87/189 (46%), Gaps = 28/189 (14%) Query: 188 TQPNAG---INVHMLEWVLAATKGIQGD----LLELYCGNGNFSLVLARHFDRVLAVEIA 240 T P +G +N +LE + K + ++E YCG G F++ L++ +R+ A+E A Sbjct: 190 TIPGSGFYQVNRFLLEKLKETVKKLISSNISFIIEGYCGAGFFTVPLSQSVERLYAIE-A 248 Query: 241 KPSVEAARYNIAANHVNNV--KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298 P A + +V + K+ + F+Q + + +Y F D Sbjct: 249 NPQSLAEAKKLGLRNVVFIEGKVEEKIADCFSQVEKSK-----------AAYLF-----D 292 Query: 299 PPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHM 356 PP GL + + P ++Y+SCNP +L RD+ L ++ ++++ D FP T + Sbjct: 293 PPEEGLAQELLLWLIDHPLPQLVYVSCNPLTLKRDILRLEESYVLKKIIPLDLFPRTPQI 352 Query: 357 ECGVLLVRK 365 E +L+ K Sbjct: 353 ESVAVLMAK 361 >gi|116495254|ref|YP_806988.1| tRNA (uracil-5-)-methyltransferase related enzyme [Lactobacillus casei ATCC 334] gi|116105404|gb|ABJ70546.1| 23S rRNA m(5)U-1939 methyltransferase [Lactobacillus casei ATCC 334] Length = 455 Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 54/217 (24%), Positives = 92/217 (42%), Gaps = 27/217 (12%) Query: 155 ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLE--WVLAATK---GI 209 ++++ Y+ E T+ GRT ++ +F Q +N E + LAA G Sbjct: 258 GKESRLLAGLPYIQE--TLLGRT--FQLSPQAFLQ----LNPKQTETLYTLAAKALDLGP 309 Query: 210 QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269 L++ YCG G + LA+ + ++ + A+ N AN + N +++ Sbjct: 310 HDTLIDAYCGIGTVGISLAKGNQPIYGMDTIAEGIADAKANAKANGLTNAHYSVGKAEDI 369 Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDS 327 +E + + VDPPR+GL+ A + + P +YISCNP + Sbjct: 370 FPKWVQE------------GMKPDAVIVDPPRAGLERAFIDALLELDPPKFVYISCNPST 417 Query: 328 LCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 L RDL L+ + ++ + D FP T E V R Sbjct: 418 LARDLVFLTKRYKVDWIQSIDMFPQTARCEAVVKFTR 454 >gi|13476218|ref|NP_107788.1| RNA methyltransferase [Mesorhizobium loti MAFF303099] gi|50401654|sp|Q985X9|Y7480_RHILO RecName: Full=Uncharacterized RNA methyltransferase mlr7480 gi|14026978|dbj|BAB53574.1| RNA methyltransferase [Mesorhizobium loti MAFF303099] Length = 412 Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 46/154 (29%), Positives = 75/154 (48%), Gaps = 16/154 (10%) Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274 +L+ G G+F+L LA + V AVE ++ A + A +K V ++ R Sbjct: 268 DLFAGCGSFALRLAAKSE-VHAVEGDAAALSA--LDRGARFATGLKRVTGERRDL---FR 321 Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA-YPHILYISCNPDSLCRDLS 333 R F L D + DPPR+G +D + + ++ P + +SCNP +L RDL Sbjct: 322 RPLTFKELNTFD-------GLVFDPPRAGAEDQSKQIARSDVPFVAAVSCNPVTLARDLR 374 Query: 334 IL-STTHTIERLALFDQFPYTRHMECGVLLVRKP 366 IL + ++ + DQF ++ H+E V L+ KP Sbjct: 375 ILIDGGYQVKSVTPIDQFLWSSHVE-AVALLDKP 407 >gi|89901550|ref|YP_524021.1| 23S rRNA 5-methyluridine methyltransferase [Rhodoferax ferrireducens T118] gi|122478810|sp|Q21UR3|RUMA_RHOFD RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|89346287|gb|ABD70490.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Rhodoferax ferrireducens T118] Length = 477 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 52/195 (26%), Positives = 79/195 (40%), Gaps = 28/195 (14%) Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 FTQ N IN ++ L + + +++ +CG GNF+L +A VL VE ++ V Sbjct: 278 FTQVNPHINRVLVSRALRLLDAKRHERVIDWFCGLGNFTLPIATQAREVLGVEGSEALVA 337 Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG-- 303 +R N N +++ F F ++ I VDPPR G Sbjct: 338 RSRQNFKLNQALAPVNKSLAATNFVA----RNLFEMTPELLIQDGAADKWLVDPPREGAV 393 Query: 304 -------------LD----DATVGMVQAYP--HILYISCNPDSLCRDLSIL--STTHTIE 342 LD VG V P I+Y+SCNP +L RD +L + Sbjct: 394 SLVQALAELHQQKLDPIGHPPIVGAVGWMPPKRIVYVSCNPSTLARDADLLVHQAGYRCS 453 Query: 343 RLALFDQFPYTRHME 357 + + FP+T H+E Sbjct: 454 FAGVVNMFPHTAHVE 468 >gi|269978108|ref|ZP_06185058.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Mobiluncus mulieris 28-1] gi|269933617|gb|EEZ90201.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Mobiluncus mulieris 28-1] Length = 450 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 52/216 (24%), Positives = 84/216 (38%), Gaps = 61/216 (28%) Query: 200 EWVLAATKGIQGDLLELYCGNGNFSLVLARHFD----------------RVLAVEIAKPS 243 EW G+ + +LYCG G F +A +V+ VE+A + Sbjct: 246 EWAARLRPGL---VWDLYCGVGGFGFAVADSLGANPSPGEAGGGEPGSCQVIGVELAGAA 302 Query: 244 VEAARY------------------------NIAANHVNNVKIVRMSSKEFTQAMR----- 274 +E A++ +N +N+ ++ SK +R Sbjct: 303 IEGAKHAAQLQRATPGQAPHENQTTQVTGDTTGSNTTDNITTNQVISKPAANGLRFITAD 362 Query: 275 ---REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLC 329 + +L D+ + V+PPR GL + ++ PH++Y SC SL Sbjct: 363 AGKWIKNQKKLVTPDL-------LVVNPPRRGLGNELSKWIEKSEIPHVIYSSCYQPSLV 415 Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 +L + + E L L D FP+TRH+E VLL RK Sbjct: 416 DNLHRMKSYRVTE-LKLVDMFPHTRHVETIVLLSRK 450 >gi|119623237|gb|EAX02832.1| chromosome X open reading frame 34, isoform CRA_b [Homo sapiens] Length = 385 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 52/205 (25%), Positives = 88/205 (42%), Gaps = 28/205 (13%) Query: 177 TLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRV 234 +L R ++F Q N ML + G+ D LL++ CG G L LA+H RV Sbjct: 192 SLKIRISPDAFFQINTA-GAEMLYRTVGELTGVNSDTILLDICCGTGVIGLSLAQHTSRV 250 Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294 L +E+ + +VE AR+ A N + N + +++ + + +E D S Sbjct: 251 LGIELLEQAVEDARWTAAFNGITNSEFHTGQAEKILPGLLKSKE-------DGQSI---V 300 Query: 295 IFVDPPRSGLDDATVGMVQAYPHI---LYISC--------NPDSLC----RDLSILSTTH 339 V+P R+GL + ++ + I +++SC N LC +L Sbjct: 301 AVVNPARAGLHYKVIQAIRNFRAIHTLVFVSCKLHGESTRNVIELCCPPDPAKKLLGEPF 360 Query: 340 TIERLALFDQFPYTRHMECGVLLVR 364 +++ D FP+T H E +L R Sbjct: 361 VLQQAVPVDLFPHTPHCELVLLFTR 385 >gi|319406943|emb|CBI80580.1| putative enzyme [Bartonella sp. 1-1C] Length = 417 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 47/175 (26%), Positives = 82/175 (46%), Gaps = 16/175 (9%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 F Q M E +LA K + + +L+ G G F+L +A+ + V A+E ++ Sbjct: 241 GGFLQATFEAETVMGEIILAHFKKAK-NAADLFAGVGTFALRMAKKMN-VHAIENNGEAL 298 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 A + AA +K V ++ + +E F ++ DPPRSG Sbjct: 299 --ANLDQAARIATGLKTVVCEKRDLFRCPLSAKELEC----------FDSVVFDPPRSGA 346 Query: 305 DDATVGMVQA-YPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHME 357 + + +A ++ +SCNP +L RDLS+L + + IE++ DQF ++ H+E Sbjct: 347 EKQVNELAKATVARVVAVSCNPITLARDLSLLVAGGYIIEKVVPIDQFLWSPHIE 401 >gi|187923829|ref|YP_001895471.1| 23S rRNA 5-methyluridine methyltransferase [Burkholderia phytofirmans PsJN] gi|187715023|gb|ACD16247.1| RNA methyltransferase, TrmA family [Burkholderia phytofirmans PsJN] Length = 472 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 55/190 (28%), Positives = 85/190 (44%), Gaps = 24/190 (12%) Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 FTQ N IN ++ L + D +L+L+CG GNF+L LAR V+ +E ++ V Sbjct: 294 FTQVNHAINRVLVSRALRLLAPARTDRVLDLFCGIGNFTLPLARISKEVVGIEGSE--VL 351 Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY-RFKTIFVDPPRSG- 303 AR +A +N V F R + D+ + F +DPPR G Sbjct: 352 TAR-ALANAELNGVA----GHTSFAC-----RNLFEITADDMRALGHFDKFLIDPPREGA 401 Query: 304 --LDDATVGMVQA-----YPHILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTR 354 + A V + Q+ I+Y+SC P +L RD +L + + + + FP+T Sbjct: 402 LAVAKALVEIAQSGDGPLPKRIVYVSCAPATLARDAGLLVHEAGYRLVGAGVVNMFPHTS 461 Query: 355 HMECGVLLVR 364 H+E L R Sbjct: 462 HVESIALFER 471 >gi|242006183|ref|XP_002423933.1| HpaII tiny fragments locus 9c protein, putative [Pediculus humanus corporis] gi|212507203|gb|EEB11195.1| HpaII tiny fragments locus 9c protein, putative [Pediculus humanus corporis] Length = 587 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 51/211 (24%), Positives = 93/211 (44%), Gaps = 29/211 (13%) Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNF 223 Y+ E+ + G+T +R +F Q N + +L +A + D LL++ CG G+ Sbjct: 388 YITEK--ILGKT--FRISPQAFFQINTNV-AEILYDSIAELSELSKDVTLLDVCCGTGSI 442 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 + L+ VL +EI+ ++ A+ N N VNN + +++ L Sbjct: 443 GICLSDKCGEVLGLEISSEAIADAKANAELNGVNNTQFFSGKAEDI------------LN 490 Query: 284 DIDIHSYRFKTI-FVDPPRSGLDDATVGMVQAYPHILYISCNPDSLCRD-LSILSTTHTI 341 + + + + + I VDPPR+GL + + ++Y+SC+P + ++ L + I Sbjct: 491 CVALKATKKEIIAVVDPPRAGLPLIQIRKNKLIKKLIYVSCDPKAAMKNFLDLGRAASKI 550 Query: 342 ERLALF--------DQFPYTRHMECGVLLVR 364 R F D FP+T H E + R Sbjct: 551 YREEAFLPVKAIPVDLFPHTSHCELVIYFER 581 >gi|325288913|ref|YP_004265094.1| RNA methyltransferase, TrmA family [Syntrophobotulus glycolicus DSM 8271] gi|324964314|gb|ADY55093.1| RNA methyltransferase, TrmA family [Syntrophobotulus glycolicus DSM 8271] Length = 518 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 46/170 (27%), Positives = 75/170 (44%), Gaps = 34/170 (20%) Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274 +LYCG G +L+LA + V +E ++ A N A N ++NVK + R Sbjct: 364 DLYCGIGTITLLLAGMAENVTGMEENSLAIADAAQNAAENKISNVKFIE---------GR 414 Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCRDL 332 E KD R + VDPPR+G++ + ++ P I+Y+SC+P ++ RD+ Sbjct: 415 VEDRIGEQKD------RPDLVVVDPPRAGMNKRVIAALLDRKPQSIIYVSCDPATMARDV 468 Query: 333 SILSTTHTIE-----------------RLALFDQFPYTRHMECGVLLVRK 365 +L+ I + D F +T +EC V L R+ Sbjct: 469 GMLANGMEIPEGKGAGLKRLKGAYRVVEVQPVDMFGWTESVECVVKLERR 518 >gi|322437064|ref|YP_004219276.1| (Uracil-5)-methyltransferase [Acidobacterium sp. MP5ACTX9] gi|321164791|gb|ADW70496.1| (Uracil-5)-methyltransferase [Acidobacterium sp. MP5ACTX9] Length = 424 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 32/88 (36%), Positives = 48/88 (54%), Gaps = 2/88 (2%) Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILS 336 F+ L+ + R I +DPPR+GL ++ A P I+Y+SC+P +L RDL++L Sbjct: 336 FDFLRAAVLQRERPDLIVLDPPRAGLGTEGSALLARIAPPEIVYVSCDPVTLARDLAVLL 395 Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVR 364 + + L D FP T H+E V L R Sbjct: 396 PHYRATAVHLVDLFPQTFHIETVVTLER 423 >gi|94311050|ref|YP_584260.1| 23S rRNA 5-methyluridine methyltransferase [Cupriavidus metallidurans CH34] gi|93354902|gb|ABF08991.1| 23S rRNA (uracil-5-)-methyltransferase [Cupriavidus metallidurans CH34] Length = 491 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 53/183 (28%), Positives = 79/183 (43%), Gaps = 24/183 (13%) Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 FTQ N IN ++ L D LL+L+CG GNF+L LA V+ +E ++ Sbjct: 313 FTQVNHQINRVLIGRALRLLDAKPTDRLLDLFCGIGNFTLPLATQGASVMGIEGSEVLTT 372 Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY-RFKTIFVDPPRSG- 303 A N N + + F R + DI + RF VDPPR G Sbjct: 373 RALANAEYNGL-------AAKTSFAC-----RNLFEVTAEDIAALGRFDRWLVDPPREGA 420 Query: 304 --LDDATVGMVQAYPHIL-----YISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTR 354 + A + QA +L Y+SC+P +L RD +L + + + + FP+T Sbjct: 421 LAVCKALAELSQAGSDVLPKRIVYVSCSPATLARDAGLLVHEAGYRLAGAGVVNMFPHTS 480 Query: 355 HME 357 H+E Sbjct: 481 HVE 483 >gi|319403929|emb|CBI77517.1| putative enzyme [Bartonella rochalimae ATCC BAA-1498] Length = 417 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 54/181 (29%), Positives = 83/181 (45%), Gaps = 28/181 (15%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 F Q M E +LA K + + +L+ G G F+L +A+ + V A+E ++ Sbjct: 241 GGFLQATFEAETVMGEIILAHLKKAK-NAADLFAGVGTFTLRMAKKMN-VHAIENNGEAL 298 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG- 303 A + AA +K V ++ RR L+ D ++ DPPRSG Sbjct: 299 --ANLDQAARIATGLKTVVCEKRDL---FRRPLSAKELECFD-------SVVFDPPRSGA 346 Query: 304 ------LDDATVGMVQAYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHM 356 LD TV V A +SCNP +L RDLS+L + + IE++ DQF ++ H+ Sbjct: 347 EEQVNELDKTTVARVVA------VSCNPITLARDLSLLVAGGYIIEKVVSIDQFLWSPHI 400 Query: 357 E 357 E Sbjct: 401 E 401 >gi|143581809|sp|Q1LLI5|RUMA_RALME RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase Length = 466 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 54/182 (29%), Positives = 81/182 (44%), Gaps = 22/182 (12%) Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 FTQ N IN ++ L D LL+L+CG GNF+L LA V+ +E ++ Sbjct: 288 FTQVNHQINRVLIGRALRLLDAKPTDRLLDLFCGIGNFTLPLATQGASVMGIEGSEVLTT 347 Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG-- 303 A N N + + + + A R E +DI RF VDPPR G Sbjct: 348 RALANAEYNGL---------AAKTSFACRNLFEVT-AEDIAALG-RFDRWLVDPPREGAL 396 Query: 304 -LDDATVGMVQAYPHIL-----YISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTRH 355 + A + QA +L Y+SC+P +L RD +L + + + + FP+T H Sbjct: 397 AVCKALAELSQAGSDVLPKRIVYVSCSPATLARDAGLLVHEAGYRLAGAGVVNMFPHTSH 456 Query: 356 ME 357 +E Sbjct: 457 VE 458 >gi|169837711|ref|ZP_02870899.1| hypothetical protein cdivTM_11537 [candidate division TM7 single-cell isolate TM7a] Length = 430 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 42/148 (28%), Positives = 71/148 (47%), Gaps = 21/148 (14%) Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271 ++++LY G G+ L + + V VEI + +V + NI KI+ ++K Sbjct: 294 NVVDLYSGVGSIGLTIGG--NNVTLVEINENAVREMQKNI--------KILGKNAKAILA 343 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL-DDATVGMVQAYPH-ILYISCNPDSLC 329 + E+ + I VDPPR+GL D ++ P I+Y+SCNP + Sbjct: 344 PSEKALEYISKDSL---------IIVDPPRAGLHKDVIDKLISEKPKRIIYLSCNPVTQA 394 Query: 330 RDLSILSTTHTIERLALFDQFPYTRHME 357 RD++ LS + I+ ++ FP T H+E Sbjct: 395 RDIAKLSEKYGIKAHRGYNFFPKTPHIE 422 >gi|332290054|ref|YP_004420906.1| 23S rRNA methyluridine methyltransferase [Gallibacterium anatis UMN179] gi|330432950|gb|AEC18009.1| 23S rRNA methyluridine methyltransferase [Gallibacterium anatis UMN179] Length = 387 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 43/156 (27%), Positives = 75/156 (48%), Gaps = 24/156 (15%) Query: 215 ELYCGNGNFSLVLARHFDRV------LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268 +L+CG G F L A +V + +EI++ ++ +AR + N + + + Sbjct: 244 DLFCGVGGFGLHCALARKKVEPEVSLVGIEISESAIRSARLAAEKAGLYNAIFQDLDASK 303 Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYPH-ILYISCNPD 326 F + N+ D+ + V+PPR G+ + + + + P +LY SCN Sbjct: 304 F--------QANQGDKPDL-------VIVNPPRRGIGEKLIQYLNELQPRFLLYSSCNVT 348 Query: 327 SLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362 ++ +DL LS H + ++ LFD FP+T H E VLL Sbjct: 349 TMQQDLQRLSGYH-LNKVQLFDMFPHTAHYEVLVLL 383 >gi|110633094|ref|YP_673302.1| (Uracil-5)-methyltransferase [Mesorhizobium sp. BNC1] gi|110284078|gb|ABG62137.1| 23S rRNA m(5)U-1939 methyltransferase [Chelativorans sp. BNC1] Length = 413 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 64/216 (29%), Positives = 91/216 (42%), Gaps = 41/216 (18%) Query: 170 RLTVAGRTLIYRQ-------------IENSFTQPNAGINVHMLEWVLAATKGIQGDLLEL 216 RL+V G L+ R+ F Q M V A KG + + +L Sbjct: 213 RLSVGGEVLVEREKPVVMFGDVPVAIPPGGFLQATEQAEEAMAGLVTAHFKGAK-HVADL 271 Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276 + G+G F+L LAR RV AVE A AA + +K V + ++ Sbjct: 272 FAGSGTFALRLARQ-ARVHAVE--SEGAALAALEDAAKGASGLKPVSVERRDL------- 321 Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSG-------LDDATVGMVQAYPHILYISCNPDSLC 329 FNR + ++ + DPPR G L +TV V A +SCNP +L Sbjct: 322 --FNR-PILAKELAQYDGLVFDPPRVGAEAQCRQLARSTVNRVAA------VSCNPGTLA 372 Query: 330 RDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364 RDLSIL + I ++ DQF ++ H+E LL R Sbjct: 373 RDLSILVEGGYRIAKVTPIDQFLWSPHVEVVALLER 408 >gi|303325854|ref|ZP_07356297.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Desulfovibrio sp. 3_1_syn3] gi|302863770|gb|EFL86701.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Desulfovibrio sp. 3_1_syn3] Length = 67 Score = 55.5 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 26/50 (52%), Positives = 34/50 (68%), Gaps = 1/50 (2%) Query: 310 GMVQAYPH-ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMEC 358 G++ P ILYISCNP +L RD L T +++ERLA D FP+T H+EC Sbjct: 10 GLLALRPQTILYISCNPATLARDADGLQTRYSLERLAAVDLFPHTPHLEC 59 >gi|57997161|emb|CAI46112.1| hypothetical protein [Homo sapiens] Length = 459 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 52/226 (23%), Positives = 93/226 (41%), Gaps = 38/226 (16%) Query: 159 KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLEL 216 ++ Y+ E L +L R ++F Q N ML + G+ D LL++ Sbjct: 252 QLLFGEPYIFEELL----SLKIRISPDAFFQINTA-GAEMLYRTVGELTGVNSDTILLDI 306 Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276 CG G L LA+H RVL +E+ + +VE AR+ A N + N + +++ + + Sbjct: 307 CCGTGVIGLSLAQHTSRVLGIELLEQAVEDARWTAAFNGITNSEFHTGQAEKILPGLLKS 366 Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY------------------PHI 318 +E D S V+P R+GL + ++ + ++ Sbjct: 367 KE-------DGQSI---VAVVNPARAGLHYKVIQAIRNFRAIHTLVFVSRKLHGESTRNV 416 Query: 319 LYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 + + C PD + +L +++ D FP+T H E +L R Sbjct: 417 IELCCPPDPAKK---LLGEPFVLQQAVPVDLFPHTPHCELVLLFTR 459 >gi|317121334|ref|YP_004101337.1| RNA methyltransferase, TrmA family [Thermaerobacter marianensis DSM 12885] gi|315591314|gb|ADU50610.1| RNA methyltransferase, TrmA family [Thermaerobacter marianensis DSM 12885] Length = 685 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 34/110 (30%), Positives = 51/110 (46%), Gaps = 4/110 (3%) Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292 RV A+E+ + E AR N A N + NV+ V + +E + Sbjct: 455 RVTAIEVVPEATEDARTNAALNGLENVEFVTGAVEEVLPHL--AAALQEAAGTGPGRGGP 512 Query: 293 KTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTTHT 340 + +DPPR G D A + P I+Y+SCNP +L RDL++L T + Sbjct: 513 DVVLLDPPRKGCDPAALAACLELAPPRIVYVSCNPVTLARDLAVLCDTGS 562 >gi|226323269|ref|ZP_03798787.1| hypothetical protein COPCOM_01041 [Coprococcus comes ATCC 27758] gi|225208459|gb|EEG90813.1| hypothetical protein COPCOM_01041 [Coprococcus comes ATCC 27758] Length = 87 Score = 55.5 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 28/74 (37%), Positives = 46/74 (62%), Gaps = 3/74 (4%) Query: 295 IFVDPPRSGLDDA-TVGMVQAYPH-ILYISCNPDSLCRDLSILSTT-HTIERLALFDQFP 351 +F+DPPR+G D+ V+ P I+YISCNP++L RDL L+ + ++++ + F Sbjct: 11 LFMDPPRAGSDEKFMASAVKMGPEKIVYISCNPETLARDLKYLTKKGYQVKKIQPVEMFA 70 Query: 352 YTRHMECGVLLVRK 365 +T H+E LL +K Sbjct: 71 FTEHVETVCLLSKK 84 >gi|254488424|ref|ZP_05101629.1| 23S rRNA (uracil-5-)-methyltransferase [Roseobacter sp. GAI101] gi|214045293|gb|EEB85931.1| 23S rRNA (uracil-5-)-methyltransferase [Roseobacter sp. GAI101] Length = 401 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 42/147 (28%), Positives = 74/147 (50%), Gaps = 15/147 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++L+ G G FSL LA + V AVE P + AA + +K V +++ Sbjct: 253 VIDLFAGCGTFSLPLAETAE-VHAVE-GDPKMTAA-LDHGWRMAKGLKPVTCEARDL--- 306 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHIL-YISCNPDSLCRD 331 RR + + D + +DPPR+G + +V+A P ++ Y+SCNP + RD Sbjct: 307 YRRPLLPDEMGKTD-------AVVLDPPRAGAEAQVAEIVKAMPPVIAYVSCNPVTFARD 359 Query: 332 LSIL-STTHTIERLALFDQFPYTRHME 357 + L + +T+ + + DQF ++ H+E Sbjct: 360 AATLIAAGYTLNWVQVVDQFRWSSHVE 386 >gi|145224506|ref|YP_001135184.1| (Uracil-5)-methyltransferase [Mycobacterium gilvum PYR-GCK] gi|145216992|gb|ABP46396.1| (Uracil-5)-methyltransferase [Mycobacterium gilvum PYR-GCK] Length = 402 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 38/134 (28%), Positives = 64/134 (47%), Gaps = 20/134 (14%) Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293 VL V+ ++ + +AR A + NV +V S + +A+ +RE R Sbjct: 286 VLTVDTSRGASRSAR--AALGDLGNVTVVTDSVR---RALGAQRE------------RAD 328 Query: 294 TIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILST-THTIERLALFDQF 350 +DPPR+G + ++ P I++I C S RD+ + T + +E L ++D F Sbjct: 329 VAVLDPPRTGAGREVIDLLAGAGVPRIIHIGCEAASFARDVGLYRTHGYAVEELQVYDSF 388 Query: 351 PYTRHMECGVLLVR 364 P T H+EC +L R Sbjct: 389 PLTHHVECVAVLSR 402 >gi|169630075|ref|YP_001703724.1| hypothetical protein MAB_2992c [Mycobacterium abscessus ATCC 19977] gi|169242042|emb|CAM63070.1| Conserved hypothetical protein [Mycobacterium abscessus] Length = 388 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 41/156 (26%), Positives = 72/156 (46%), Gaps = 24/156 (15%) Query: 215 ELYCGNGNFSLVLARHFDR---VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271 +LY G G F+ L R V++V+ ++P+ +A+ + + +++ V M Sbjct: 251 DLYGGVGVFAAALGEAVGRTGHVVSVDTSRPAFRSAK-----SALGDLRQVTMICGSVRH 305 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLC 329 A+R L + D+ +DPPR+G +G V A +++I C + Sbjct: 306 AIRD------LGEADV-------AVLDPPRAGAGREVIGKVAAANVSRVIHIGCEAAAFA 352 Query: 330 RDLSI-LSTTHTIERLALFDQFPYTRHMECGVLLVR 364 RD+ + L + + L +FD FP T H+E LL R Sbjct: 353 RDVGLYLERGYRVRELRVFDAFPLTHHIESFALLTR 388 >gi|158424731|ref|YP_001526023.1| putative RNA methyltransferase [Azorhizobium caulinodans ORS 571] gi|158331620|dbj|BAF89105.1| putative RNA methyltransferase [Azorhizobium caulinodans ORS 571] Length = 406 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 44/174 (25%), Positives = 78/174 (44%), Gaps = 16/174 (9%) Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 SF Q A + + V +G + + +L+CG G F+L LA H RV E + ++ Sbjct: 240 SFLQATAAGEALLAQAVGEGVEGAR-SVADLFCGVGTFALRLASH-ARVRGYESNETAIT 297 Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD 305 A I + ++ E RR L+ +F+ + +DPPR G + Sbjct: 298 ALLKAI-----RGTQGLKSVEGEVRDLFRRPLMAQELE-------KFEAVVIDPPRQGAE 345 Query: 306 DATVGMVQA-YPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHME 357 + ++ ++Y+SC+ + RD +L +ER+ +DQF Y+ H+E Sbjct: 346 AQARELARSKVERLVYVSCSAQTFARDARLLIDGGFRLERVTPYDQFRYSPHVE 399 >gi|254557749|ref|YP_003064166.1| RNA methyltransferase [Lactobacillus plantarum JDM1] gi|254046676|gb|ACT63469.1| RNA methyltransferase [Lactobacillus plantarum JDM1] Length = 481 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 26/73 (35%), Positives = 44/73 (60%), Gaps = 2/73 (2%) Query: 295 IFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPY 352 + VDPPR+GLD+ + ++Q+ P ++YISCNP +L +DL L+ + ++ + D FP Sbjct: 408 MVVDPPRTGLDNVLIDAILQSAPEKLVYISCNPSTLAQDLQALTRGYQVDYIQSIDMFPQ 467 Query: 353 TRHMECGVLLVRK 365 T E V ++ Sbjct: 468 TARCEAVVRFTKR 480 >gi|28379606|ref|NP_786498.1| RNA methyltransferase [Lactobacillus plantarum WCFS1] gi|300769546|ref|ZP_07079432.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308181836|ref|YP_003925964.1| RNA methyltransferase [Lactobacillus plantarum subsp. plantarum ST-III] gi|50401757|sp|Q88SY9|Y3226_LACPL RecName: Full=Uncharacterized RNA methyltransferase lp_3226 gi|28272446|emb|CAD65370.1| RNA methyltransferase [Lactobacillus plantarum WCFS1] gi|300492961|gb|EFK28143.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308047327|gb|ADN99870.1| RNA methyltransferase [Lactobacillus plantarum subsp. plantarum ST-III] Length = 481 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 26/73 (35%), Positives = 44/73 (60%), Gaps = 2/73 (2%) Query: 295 IFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPY 352 + VDPPR+GLD+ + ++Q+ P ++YISCNP +L +DL L+ + ++ + D FP Sbjct: 408 MVVDPPRTGLDNVLIDAILQSAPEKLVYISCNPSTLAQDLQALTRGYQVDYIQSIDMFPQ 467 Query: 353 TRHMECGVLLVRK 365 T E V ++ Sbjct: 468 TARCEAVVRFTKR 480 >gi|320531384|ref|ZP_08032352.1| TRAM domain protein [Actinomyces sp. oral taxon 171 str. F0337] gi|320136385|gb|EFW28365.1| TRAM domain protein [Actinomyces sp. oral taxon 171 str. F0337] Length = 465 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 44/159 (27%), Positives = 73/159 (45%), Gaps = 17/159 (10%) Query: 213 LLELYCGNGNFSLVLAR---HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269 +LELY G G F+L LA +VL++E + +V AR + + + R+S++ Sbjct: 318 VLELYSGAGLFTLPLASLVGAGGQVLSLEGNEQAVRDARRTLHDHPAARLASGRVSARSV 377 Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDS 327 RE R + +DPPR G + V A I+ ++C+P + Sbjct: 378 -------RELAG----SFTGGRPDVVVLDPPRQGAGREVIEAVSALGAERIVLVACDPAA 426 Query: 328 LCRDL-SILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 L RDL ++L + + ++ D FP+T H E +L R Sbjct: 427 LARDLGTLLRAGYVLGSMSALDMFPHTHHFETIAVLDRS 465 >gi|315925903|ref|ZP_07922108.1| 23S rRNA (uracil-5-)-methyltransferase [Pseudoramibacter alactolyticus ATCC 23263] gi|315620724|gb|EFV00700.1| 23S rRNA (uracil-5-)-methyltransferase [Pseudoramibacter alactolyticus ATCC 23263] Length = 464 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 48/161 (29%), Positives = 76/161 (47%), Gaps = 18/161 (11%) Query: 207 KGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266 G + + +LYCG G + VLA + V +E+ +V AAR N AAN + N + Sbjct: 316 SGKKPAVFDLYCGVGTIAQVLAPIAEHVTGIELVPEAVNAARANAAANGLTNCTFIAGDV 375 Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH--ILYISCN 324 K E +L + + I +DPPR G+ + + A+ +Y+SC Sbjct: 376 KA---------EVGKLAEAP------EVIVLDPPREGIHPRALPDILAFAPACFVYVSCK 420 Query: 325 PDSLCRDL-SILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 SL RDL + ++ + +E + D FP T H+EC L+ R Sbjct: 421 ASSLARDLPAFVAAGYRVETVQCVDMFPQTVHVECIALIQR 461 >gi|326436196|gb|EGD81766.1| hypothetical protein PTSG_02479 [Salpingoeca sp. ATCC 50818] Length = 735 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 66/277 (23%), Positives = 114/277 (41%), Gaps = 44/277 (15%) Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIG-RANKTKICLDRD---------- 165 A++ L L D A + A RL++ +H I ++ + + + C+ +D Sbjct: 406 AVLFLTDAELEDGAVAKEAERLKEFVHEHNTPIDIMMLQVDNSASCMAKDRPAPHIIKGD 465 Query: 166 --YVDERLTVAGRTLIYRQIENSFTQ---PNAGINVHMLEWVLAATKGIQGDLLELYCGN 220 +++E+L L +R +SF Q P A + ++ T +L+L CG Sbjct: 466 SQFIEEKLL----GLNFRISPDSFFQVNTPGAEVLYSLIGDWCQLTDDKSDVVLDLCCGT 521 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF- 279 G LA V+ VE+ + +V A+ N N + NV ++E + ++R+ Sbjct: 522 GTIGQTLASRVQHVIGVEMVEDAVIDAKANAQRNGITNVTYHTGKAEEVVPELVKDRDTA 581 Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV---QAYPHILYISCNPDS-------LC 329 ++L VDPPR+GL + V + + ++Y+SCN LC Sbjct: 582 DKL-----------IAVVDPPRAGLHPSVVHAIRRCEGIQRLIYVSCNLKGASQNLVDLC 630 Query: 330 RDLS--ILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 R S I + D FP+T H E + L R Sbjct: 631 RPPSKRYRGAPFEIIKAVPVDMFPHTDHCEVVLYLSR 667 >gi|191638764|ref|YP_001987930.1| tRNA (Uracil-5-)-methyltransferase [Lactobacillus casei BL23] gi|190713066|emb|CAQ67072.1| tRNA (Uracil-5-)-methyltransferase [Lactobacillus casei BL23] gi|327382805|gb|AEA54281.1| RNA methyltransferase, TrmA family [Lactobacillus casei LC2W] gi|327385992|gb|AEA57466.1| RNA methyltransferase, TrmA family [Lactobacillus casei BD-II] Length = 455 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 54/217 (24%), Positives = 92/217 (42%), Gaps = 27/217 (12%) Query: 155 ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLE--WVLAATK---GI 209 ++++ Y+ E T+ GRT ++ +F Q +N E + LAA G Sbjct: 258 GKESRLLAGLPYIQE--TLLGRT--FQLSPQAFLQ----LNPKQTETLYTLAAKALDLGP 309 Query: 210 QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269 L++ YCG G + LA+ + ++ + A+ N AN + N +++ Sbjct: 310 HDTLIDAYCGIGTVGISLAKGNQPIYGMDTIAEGIADAKANAKANGLTNAHYSVGKAEDI 369 Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDS 327 +E + + VDPPR+GL+ A + + P +YISCNP + Sbjct: 370 FPKWVQE------------GMKPDAVIVDPPRAGLERAFIDALLELDPPKFVYISCNPST 417 Query: 328 LCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 L RDL L+ + ++ + D FP T E V R Sbjct: 418 LARDLVSLTKRYKVDWIQSIDMFPQTARCEAVVKFTR 454 >gi|315444837|ref|YP_004077716.1| SAM-dependent methyltransferase, tRNA(uracil-5)-methyltransferase [Mycobacterium sp. Spyr1] gi|315263140|gb|ADT99881.1| SAM-dependent methyltransferase, tRNA(uracil-5)-methyltransferase [Mycobacterium sp. Spyr1] Length = 402 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 38/134 (28%), Positives = 64/134 (47%), Gaps = 20/134 (14%) Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293 VL V+ ++ + +AR A + NV +V S + +A+ +RE R Sbjct: 286 VLTVDTSRGASRSAR--AALGDLGNVTVVTDSVR---RALGAQRE------------RAD 328 Query: 294 TIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILST-THTIERLALFDQF 350 +DPPR+G + ++ P I++I C S RD+ + T + +E L ++D F Sbjct: 329 VAVLDPPRTGAGREVIDLLAGAGVPRIIHIGCEAASFARDVGLYRTHGYAVEELQVYDSF 388 Query: 351 PYTRHMECGVLLVR 364 P T H+EC +L R Sbjct: 389 PLTHHVECVAVLSR 402 >gi|209886014|ref|YP_002289871.1| hypothetical RNA methyltransferase [Oligotropha carboxidovorans OM5] gi|209874210|gb|ACI94006.1| hypothetical RNA methyltransferase [Oligotropha carboxidovorans OM5] Length = 413 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 51/190 (26%), Positives = 85/190 (44%), Gaps = 20/190 (10%) Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLAR 229 R+ AG TL SF QP + V+ KG + + +L+CG G F+L LA Sbjct: 235 RVGRAGVTLP----PASFMQPTQAGEETLAALVIQRCKGAK-RIADLFCGFGPFALRLAE 289 Query: 230 HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHS 289 F RV A + +++A N A +K + +++ RR L++ Sbjct: 290 KF-RVAAFDSDGKAIDA--LNNAVRATQGLKPLTAVARDL---FRRPLVPQELRE----- 338 Query: 290 YRFKTIFVDPPRSGLDDATVGMVQA-YPHILYISCNPDSLCRDLSILSTTH-TIERLALF 347 F + DPPR G + + + + ++ +SCNP + RD IL+ + ++ Sbjct: 339 --FDCVVFDPPRQGAEAQSRQLAASRLSRVVAVSCNPATFARDARILTGGGFRLASVSPV 396 Query: 348 DQFPYTRHME 357 DQF +T H+E Sbjct: 397 DQFRHTAHVE 406 >gi|109131524|ref|XP_001091317.1| PREDICTED: tRNA (uracil-5-)-methyltransferase homolog isoform 4 [Macaca mulatta] Length = 504 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 50/208 (24%), Positives = 87/208 (41%), Gaps = 34/208 (16%) Query: 177 TLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRV 234 +L R ++F Q N ML + G+ D LL++ CG G L LA+H +V Sbjct: 311 SLKIRISPDAFFQINTA-GAEMLYRTVGELTGVNSDTILLDICCGTGVIGLSLAQHTSQV 369 Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294 L +E+ + +VE AR+ A N + N + +++ + + +E D S Sbjct: 370 LGIELVEQAVEDARWTAAFNGITNSEFHTGRAEKILPGLLKSKE-------DGQSV---V 419 Query: 295 IFVDPPRSGLDDATVGMV------------------QAYPHILYISCNPDSLCRDLSILS 336 V+P R+GL + + ++ +I+ + C PDS + L Sbjct: 420 AVVNPARAGLHYKVIQAIRNCGAIRTLVFVSCKLHGESTRNIIELCCPPDSAKKH---LG 476 Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVR 364 +++ D FP+T H E +L R Sbjct: 477 EPFVLQQAVPVDLFPHTPHCELVLLFTR 504 >gi|119623401|gb|EAX02996.1| HpaII tiny fragments locus 9C, isoform CRA_b [Homo sapiens] gi|119623402|gb|EAX02997.1| HpaII tiny fragments locus 9C, isoform CRA_b [Homo sapiens] Length = 562 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 34/116 (29%), Positives = 57/116 (49%), Gaps = 14/116 (12%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +L++ CG G L LAR RV+ VE+ +VE AR N N ++NV+ +++ Sbjct: 436 VLDVCCGTGTIGLALARKVKRVIGVELCPEAVEDARVNAQDNELSNVEFHCGRAEDLVPT 495 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH---ILYISCNP 325 + +RL + +DPPR+GL + ++ + +LY+SCNP Sbjct: 496 L-----VSRLASQHL------VAILDPPRAGLHSKVILAIRRAKNLRRLLYVSCNP 540 >gi|86751561|ref|YP_488057.1| (Uracil-5)-methyltransferase [Rhodopseudomonas palustris HaA2] gi|86574589|gb|ABD09146.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Rhodopseudomonas palustris HaA2] Length = 412 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 52/180 (28%), Positives = 83/180 (46%), Gaps = 17/180 (9%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 +F Q A + E L+ K ++ + +L+CG G F+L LA RV+A + P+V Sbjct: 245 GAFLQATALGEQTLAELALSEIKRVK-LIADLFCGVGPFALRLATKA-RVVAYDSDAPAV 302 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 A + AA + +K ++ ++ RR L D F + DPPR G Sbjct: 303 NALQK--AAQATSGLKPIKAEPRDL---FRRPLAPPELLD-------FDAVLFDPPRQGA 350 Query: 305 DDATVGMVQA-YPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHME-CGVL 361 + + P I+ +SCN + RD +L + +E++ DQF YT H+E GVL Sbjct: 351 QAQAAQLAASKVPLIIAVSCNAQTFARDAKLLIDGGYRLEKVTPVDQFKYTPHVELVGVL 410 >gi|114685145|ref|XP_001166997.1| PREDICTED: tRNA (uracil-5-)-methyltransferase homolog A isoform 4 [Pan troglodytes] Length = 562 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 34/116 (29%), Positives = 57/116 (49%), Gaps = 14/116 (12%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +L++ CG G L LAR RV+ VE+ +VE AR N N ++NV+ +++ Sbjct: 436 VLDVCCGTGTIGLALARKVKRVIGVELCPEAVEDARVNAQDNELSNVEFHCGRAEDLVPT 495 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH---ILYISCNP 325 + +RL + +DPPR+GL + ++ + +LY+SCNP Sbjct: 496 L-----VSRLASQHL------VAILDPPRAGLHSKVILAIRRAKNLRRLLYVSCNP 540 >gi|240169709|ref|ZP_04748368.1| SAM-dependent methyltransferase [Mycobacterium kansasii ATCC 12478] Length = 396 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 43/155 (27%), Positives = 74/155 (47%), Gaps = 25/155 (16%) Query: 215 ELYCGNGNFSLVLARHFD---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271 +LY G G F+ VL RV V+ A+ + A +A + V +V ++ Sbjct: 258 DLYGGAGVFAAVLGEAVGESGRVWTVDSARAASRTAHAALA--DLPQVAVV-------SE 308 Query: 272 AMRREREFNRLK-DIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSL 328 ++RR E + D+ + +DPPR+G + ++ A P +++I C S Sbjct: 309 SVRRMLEGQPVGADVAV---------LDPPRTGAGRDVIKLLAAARVPRVVHIGCEAASF 359 Query: 329 CRDLSIL-STTHTIERLALFDQFPYTRHMECGVLL 362 RD+ + S + +E++ +FD FP T H+EC LL Sbjct: 360 ARDIGLYRSHDYVVEKIRVFDAFPLTHHVECVALL 394 >gi|315612146|ref|ZP_07887061.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis ATCC 49296] gi|315315707|gb|EFU63744.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis ATCC 49296] Length = 76 Score = 55.1 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 2/73 (2%) Query: 295 IFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPY 352 + VDPPR+GLDD + + Y ++Y+SCN +L RDL L + ++ + D FP+ Sbjct: 1 MIVDPPRTGLDDKLLDTILTYVPDKMVYVSCNVSTLARDLVKLVKVYDLQYIQSVDMFPH 60 Query: 353 TRHMECGVLLVRK 365 T E V LV+K Sbjct: 61 TARTEAVVKLVKK 73 >gi|397360|emb|CAA81021.1| yNucR endo-exonuclease [Saccharomyces cerevisiae] gi|486515|emb|CAA82134.1| RNC1 [Saccharomyces cerevisiae] Length = 617 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/103 (32%), Positives = 53/103 (51%), Gaps = 13/103 (12%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L++ YCG+G FS+ ++ D+V+ VEI+ SV A N AN V N + + Sbjct: 492 LVDAYCGSGLFSICSSKGVDKVIGVEISADSVSFAEKNAKANGVENCRFI---------V 542 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY 315 + E+ F + ID S ++ +DPPR G D+ + + AY Sbjct: 543 GKAEKLF---ESIDTPSEN-TSVILDPPRKGCDELFLKQLAAY 581 >gi|16552598|dbj|BAB71349.1| unnamed protein product [Homo sapiens] Length = 562 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 34/116 (29%), Positives = 56/116 (48%), Gaps = 14/116 (12%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +L++ CG G L LAR RV+ VE+ +VE AR N N ++NV+ +++ Sbjct: 436 VLDVCCGTGTIGLALARKVKRVIGVELCPEAVEDARVNAQDNELSNVEFHCGRAEDLVPT 495 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH---ILYISCNP 325 + RL + +DPPR+GL + ++ + +LY+SCNP Sbjct: 496 L-----VGRLASQHL------VAILDPPRAGLHSKVILAIRRAKNLRRLLYVSCNP 540 >gi|316932488|ref|YP_004107470.1| (Uracil-5)-methyltransferase [Rhodopseudomonas palustris DX-1] gi|315600202|gb|ADU42737.1| (Uracil-5)-methyltransferase [Rhodopseudomonas palustris DX-1] Length = 413 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 49/176 (27%), Positives = 76/176 (43%), Gaps = 16/176 (9%) Query: 184 ENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 +F Q A + L + A G + +L+CG G F+L LA RV A + P+ Sbjct: 244 PGAFLQATA-LGEQTLAGLAMAHLGRAKQVADLFCGVGPFALRLAEKV-RVFACDSDAPA 301 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 V A AA +K V+ +++ RR L+D F + DPPR G Sbjct: 302 VAA--LQKAAPGTPGLKPVKAEARDL---FRRPLAPPELRD-------FDAVLFDPPRQG 349 Query: 304 LDDATVGMVQA-YPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHME 357 + + P ++ +SCN + RD +L + +E + DQF YT H+E Sbjct: 350 AQAQAAQLAASRVPLVIAVSCNATTFARDAKLLIDGGYRLEGVIPVDQFKYTPHVE 405 >gi|224010878|ref|XP_002294396.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220969891|gb|EED88230.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 548 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 48/163 (29%), Positives = 67/163 (41%), Gaps = 29/163 (17%) Query: 213 LLELYCGNGNFSLVLARH--FDRVLAVEIAKPSVEAARYNIAANHV--NNVKIV-RMSSK 267 L+++ CG G L L + ++ V+IAKP++ AR N N + N + V + K Sbjct: 376 LVDVCCGTGTIGLTLMKEGVVGSLVGVDIAKPAILDARANAEKNGMTTNTTRFVASPAEK 435 Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA---TVGMVQAYPHILYISCN 324 M+R I VDP R GL T+ M + I+Y+SCN Sbjct: 436 VLPDEMKR-----------ISQSCPVVAVVDPARDGLHGTVLKTLRMTERIQRIVYVSCN 484 Query: 325 P-DSLCRDLSILSTTHTIERLAL---------FDQFPYTRHME 357 P SLC D +L T + L D FP T H E Sbjct: 485 PTGSLCPDAGLLCAPPTKKYPGLPFKVTMAQPCDMFPMTNHCE 527 >gi|315604322|ref|ZP_07879388.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Actinomyces sp. oral taxon 180 str. F0310] gi|315314028|gb|EFU62079.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Actinomyces sp. oral taxon 180 str. F0310] Length = 449 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 45/166 (27%), Positives = 75/166 (45%), Gaps = 34/166 (20%) Query: 213 LLELYCGNGNFSLVLARHFDR---VLAVEIAKPSVEAARYNIAA--------NHVNNVKI 261 ++ELY G G FS+ LAR V+ +E + +V A N+AA +V+ + Sbjct: 304 IMELYSGAGLFSVPLARAVGESGHVVTLEGDEGAVCDAGENLAAFDWVDAFAGNVDREGV 363 Query: 262 VRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHIL 319 V +S + + D+ + DPPR+G + A P ++ Sbjct: 364 VDLSG-----------QLGAVPDV---------VVADPPRAGAGAEVCEAIAATGAPRVV 403 Query: 320 YISCNPDSLCRDLSILS-TTHTIERLALFDQFPYTRHMECGVLLVR 364 +SC+P + RDL L+ +T+ L +D FP+T H+E +L R Sbjct: 404 LVSCDPAAGARDLRALTECGYTLASLQAWDLFPHTHHVEMVSVLSR 449 >gi|307292865|ref|ZP_07572711.1| (Uracil-5)-methyltransferase [Sphingobium chlorophenolicum L-1] gi|306880931|gb|EFN12147.1| (Uracil-5)-methyltransferase [Sphingobium chlorophenolicum L-1] Length = 402 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 45/150 (30%), Positives = 71/150 (47%), Gaps = 17/150 (11%) Query: 210 QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269 +G + +L+CG G F+L L + V A E A+ V + + AAN RM + Sbjct: 260 EGAIADLFCGLGTFALALGPN-RPVYAAEAARDLVLSLKS--AANRAGR----RMVADH- 311 Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY-PHILYISCNPDSL 328 R+ R RF I +DPPR+G + + + ++ P I YISCNP S Sbjct: 312 -------RDLFRRPLTPAEIDRFAGIVIDPPRAGAREQVLQLAASHVPVIAYISCNPASF 364 Query: 329 CRDLSILS-TTHTIERLALFDQFPYTRHME 357 RD + L+ + +E + QF ++ H+E Sbjct: 365 ARDAAHLTDGGYRLESVRPVGQFRWSTHVE 394 >gi|118369094|ref|XP_001017752.1| hypothetical protein TTHERM_00437560 [Tetrahymena thermophila] gi|89299519|gb|EAR97507.1| hypothetical protein TTHERM_00437560 [Tetrahymena thermophila SB210] Length = 648 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 42/167 (25%), Positives = 70/167 (41%), Gaps = 22/167 (13%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L++ G G + LA V+ +E+ + + A+ NI N + N K++ Sbjct: 487 FLDICSGIGTIGICLANSAKEVIGIEMVETACNDAKINIEQNGITNYKVI---------C 537 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV---QAYPHILYISCNPDSLC 329 + E N + Y+ + VDPPR GL V + + H++Y++CNP ++ Sbjct: 538 SKVEDVINEIVGPLAGQYKIIGV-VDPPRPGLHANVVKAMRTCKGLDHLVYVACNPVAVT 596 Query: 330 RDLSILSTTHTIERLAL---------FDQFPYTRHMECGVLLVRKPS 367 +L L + R A D FP T+H E L R P+ Sbjct: 597 DNLLALCLPESKRRRAPAFHLTKYYGCDLFPQTKHFEGIFYLERYPN 643 >gi|121605471|ref|YP_982800.1| 23S rRNA 5-methyluridine methyltransferase [Polaromonas naphthalenivorans CJ2] gi|254766920|sp|A1VQF1|RUMA_POLNA RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|120594440|gb|ABM37879.1| 23S rRNA m(5)U-1939 methyltransferase [Polaromonas naphthalenivorans CJ2] Length = 490 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 60/221 (27%), Positives = 91/221 (41%), Gaps = 53/221 (23%) Query: 175 GRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFD 232 G T+ ++ + FTQ N IN ++ L G+Q +++ +CG GNF+L LA Sbjct: 277 GITMPFKPTD--FTQVNPHINQVLVSRALRLL-GVQPTERVIDWFCGLGNFTLPLATRAR 333 Query: 233 RVLAVEIAKPSVEAARYNI----AANHV----NNVKIVRMSSKEFTQAMRREREFNRLKD 284 VL +E ++ V +R N A++HV K V + E T AM +KD Sbjct: 334 EVLGIEGSEVLVARSRENYERNKASSHVRPALEATKFVARNLFEMTPAML-------VKD 386 Query: 285 IDIHSYRFKTIFVDPPRSG--------------------LDDA------TVGMVQAYPHI 318 + VDPPR G DD +G I Sbjct: 387 GAAEKW-----LVDPPREGAFELFKSLAALHQQVVTGVPCDDGIHQQSLALGGWTPPSRI 441 Query: 319 LYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTRHME 357 +Y+SCNP +L RD +L + + + FP+T H+E Sbjct: 442 VYVSCNPATLARDAGVLVEGGGYRCTAAGVVNMFPHTAHVE 482 >gi|47223267|emb|CAF98651.1| unnamed protein product [Tetraodon nigroviridis] Length = 764 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 46/167 (27%), Positives = 72/167 (43%), Gaps = 25/167 (14%) Query: 211 GDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270 G LL++ CG G F + + DRV+ VE+ + +VE A +N + N V N + + ++ Sbjct: 274 GTLLDVCCGTGAFGITTSPRVDRVVGVELMEQAVEDAHHNASLNRVLNCEFIPGRAEVVL 333 Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHI---LYISCNPDS 327 + + I V+P R+GL V ++ P I +Y+SC PD Sbjct: 334 PGLVSQ----------IGCRGSVAAVVNPARAGLHHKVVRALRNQPDIRRLVYVSCKPDG 383 Query: 328 LC----RDLSI-------LSTTHTIERLAL-FDQFPYTRHMECGVLL 362 R+L L+ LAL D FP+T H E +L Sbjct: 384 EAMRNFRELCCAPDPQKKLTGEAFSPSLALPVDMFPHTAHCELVILF 430 >gi|322375229|ref|ZP_08049743.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus sp. C300] gi|321280729|gb|EFX57768.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus sp. C300] Length = 76 Score = 54.7 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 2/73 (2%) Query: 295 IFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPY 352 + VDPPR+GLDD + + Y ++Y+SCN +L RDL L + ++ + D FP+ Sbjct: 1 MIVDPPRTGLDDKLLETILTYVPDKMVYVSCNVSTLARDLVKLVKVYDLQYIQSVDMFPH 60 Query: 353 TRHMECGVLLVRK 365 T E V LV+K Sbjct: 61 TARTEAVVKLVKK 73 >gi|150395715|ref|YP_001326182.1| (Uracil-5)-methyltransferase [Sinorhizobium medicae WSM419] gi|150027230|gb|ABR59347.1| (Uracil-5)-methyltransferase [Sinorhizobium medicae WSM419] Length = 420 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 52/175 (29%), Positives = 81/175 (46%), Gaps = 16/175 (9%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 +FTQ M VL G + +L+ G G F+L +AR RV AVE ++ Sbjct: 253 GAFTQATRPAEEAMARLVLGHV-GKAKRVADLFAGIGTFALRIARTA-RVHAVEGDDRAL 310 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 +A + AA + +K V + ++ RR LK F + DPPR+G Sbjct: 311 KA--LDFAARNTQGLKPVTVEKRDL---FRRPMMAQELK-------VFDAVVFDPPRAGA 358 Query: 305 DDATVGMVQA-YPHILYISCNPDSLCRDLSILSTT-HTIERLALFDQFPYTRHME 357 + + ++ I +SCNP +L RDLSIL+ + I + DQF ++ H+E Sbjct: 359 ETQCHELARSGVKKIAAVSCNPVTLARDLSILTAAGYRITDVTPIDQFLWSAHVE 413 >gi|145340943|ref|XP_001415576.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144575799|gb|ABO93868.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 581 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 54/219 (24%), Positives = 90/219 (41%), Gaps = 58/219 (26%) Query: 200 EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259 EW A+ G Q LL++ CG G L LAR +V+ V+I + S+ A N N V+N Sbjct: 367 EW---ASPGGQSLLLDVCCGTGTIGLTLARAVKKVVGVDIVEESIRDAFTNAKLNGVDNT 423 Query: 260 -------------------KIVR-------------------MSSKEFTQAMRREREFNR 281 ++R +S+ E T+A+ +E Sbjct: 424 DWLAGKAEHVLPKVLNDYKTLIRPDGRAPKPFTAVSVLDDPDLSADEETEAIVEAKETTN 483 Query: 282 LKDIDI-HSYRFKTIFVDPPRSGLDDATVGMVQ---AYPHILYISCNPDSLCRDLSILST 337 + + H + VDPPR+GL + ++ ++Y+SCN +++ ++ L Sbjct: 484 AELVGANHEFDDVVAIVDPPRAGLHRHVLSALRRENRLKRLVYVSCNANTMATNVIDLCV 543 Query: 338 THT------------IERLALFDQFPYTRHMECGVLLVR 364 ++ LAL D FP+T H+E +LL R Sbjct: 544 PQGADGNGGGVPFTPVKALAL-DLFPHTAHVEAVLLLER 581 >gi|25028353|ref|NP_738407.1| hypothetical protein CE1797 [Corynebacterium efficiens YS-314] gi|259507408|ref|ZP_05750308.1| SAM-dependent methyltransferase [Corynebacterium efficiens YS-314] gi|50401588|sp|Q8FPI1|Y1797_COREF RecName: Full=Uncharacterized RNA methyltransferase CE1797 gi|23493638|dbj|BAC18607.1| conserved hypothetical protein [Corynebacterium efficiens YS-314] gi|259165033|gb|EEW49587.1| SAM-dependent methyltransferase [Corynebacterium efficiens YS-314] Length = 421 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 45/155 (29%), Positives = 72/155 (46%), Gaps = 23/155 (14%) Query: 215 ELYCGNGNFSLVLARHFD-RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273 +LY G G F V+ R V +VE+++ S EA +A V A Sbjct: 284 DLYGGVGLFVPVINRALGAHVHSVELSEGSAEAGDDALAGLPVT------------FHAG 331 Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGL-DDATVGMVQAYPH-ILYISCNPDSLCRD 331 R E ++L + + +DPPR+G D + A P +++I C+P + RD Sbjct: 332 RVESVTSQLP-------KPHVVVLDPPRTGAGSDVVATIAGAKPQLVVHIGCDPATFARD 384 Query: 332 LSILSTT-HTIERLALFDQFPYTRHMECGVLLVRK 365 ++ S +T++RLA+F+ FP T H E + RK Sbjct: 385 VADWSAGGYTLDRLAVFNAFPATHHYETIGVFTRK 419 >gi|296157778|ref|ZP_06840612.1| RNA methyltransferase, TrmA family [Burkholderia sp. Ch1-1] gi|295892024|gb|EFG71808.1| RNA methyltransferase, TrmA family [Burkholderia sp. Ch1-1] Length = 472 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 52/193 (26%), Positives = 80/193 (41%), Gaps = 30/193 (15%) Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVE----IAK 241 FTQ N IN ++ L + D +L+L+CG GNF+L LAR V+ +E + Sbjct: 294 FTQVNHAINRVLVSRALRLLAPARTDRVLDLFCGIGNFTLPLARISKEVMGIEGSEVLTS 353 Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301 ++ A N A H + R + MR F++ +DPPR Sbjct: 354 RALANAELNGMAGHTSFA--CRNLFEVTADDMRALGHFDKF-------------LIDPPR 398 Query: 302 SG--------LDDATVGMVQAYPHILYISCNPDSLCRDLSIL--STTHTIERLALFDQFP 351 G + A G I+Y+SC P +L RD +L + + + + FP Sbjct: 399 EGALAVAKALAEIARSGNGPLPKRIVYVSCAPATLARDAGLLVHEAGYRLVGAGVVNMFP 458 Query: 352 YTRHMECGVLLVR 364 +T H+E L R Sbjct: 459 HTSHVESIALFER 471 >gi|38233983|ref|NP_939750.1| hypothetical protein DIP1398 [Corynebacterium diphtheriae NCTC 13129] gi|51316648|sp|Q6NGV2|Y1398_CORDI RecName: Full=Uncharacterized RNA methyltransferase DIP1398 gi|38200245|emb|CAE49929.1| Conserved hypothetical protein [Corynebacterium diphtheriae] Length = 420 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 48/157 (30%), Positives = 73/157 (46%), Gaps = 21/157 (13%) Query: 215 ELYCGNGNFSLVLARHFDR---VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271 +LY G G+F+ + D V VE A +V A + ++ V + KIV + Sbjct: 278 DLYGGCGSFASAILSAVDNHGVVHCVESAPAAVSAGKRALS-QLVEDQKIVFHTET---- 332 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPHI-LYISCNPDSLC 329 ER N+L + + +DPPR G TV + Q+ P ++I C+P + Sbjct: 333 ---VERAMNQLPAPTL-------VVLDPPRVGAGAETVRAIAQSGPQAAIHIGCDPATFA 382 Query: 330 RDLSILSTTHTI-ERLALFDQFPYTRHMECGVLLVRK 365 RD++ S I E+L +FD FP T H E LL +K Sbjct: 383 RDIAEWSRNGFILEKLRVFDAFPGTHHCETIGLLTKK 419 >gi|41053969|ref|NP_956223.1| tRNA (uracil-5-)-methyltransferase homolog A [Danio rerio] gi|28279548|gb|AAH45367.1| Trm2 tRNA methyltransferase 2 homolog A (S. cerevisiae) [Danio rerio] Length = 619 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 40/164 (24%), Positives = 73/164 (44%), Gaps = 23/164 (14%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +L++ CG G + LA+ +V+ +E+ + +V+ A N AN + NV+ +++ Sbjct: 458 VLDVCCGTGTIGISLAKRVKKVIGIELCQEAVKDAEANAKANGLTNVEFHCGKAEDVFPT 517 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH---ILYISCNPDS-- 327 + N + ++ T VDPPR+GL + ++ H ++Y++CN + Sbjct: 518 I-----LNAVVSPNV------TAIVDPPRAGLHSKVILAIRKAEHLKRLVYVACNAKAAM 566 Query: 328 -----LCRDLS--ILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 LCR S + + D FP T H E +L R Sbjct: 567 NNFIDLCRAPSNRVRGAAFRPVKAMAVDLFPQTMHCETILLFER 610 >gi|122890880|emb|CAM13119.1| novel protein (zgc:55519) [Danio rerio] Length = 619 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 40/164 (24%), Positives = 73/164 (44%), Gaps = 23/164 (14%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +L++ CG G + LA+ +V+ +E+ + +V+ A N AN + NV+ +++ Sbjct: 458 VLDVCCGTGTIGISLAKRVKKVIGIELCQEAVKDAEANAKANGLTNVEFHCGKAEDVFPT 517 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH---ILYISCNPDS-- 327 + N + ++ T VDPPR+GL + ++ H ++Y++CN + Sbjct: 518 I-----LNAVVSPNV------TAIVDPPRAGLHSKVILAIRKAEHLKRLVYVACNAKAAM 566 Query: 328 -----LCRDLS--ILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 LCR S + + D FP T H E +L R Sbjct: 567 NNFIDLCRAPSNRVRGAAFRPVKAMAVDLFPQTMHCETILLFER 610 >gi|296235980|ref|XP_002763130.1| PREDICTED: tRNA (uracil-5-)-methyltransferase homolog isoform 1 [Callithrix jacchus] Length = 504 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 52/205 (25%), Positives = 89/205 (43%), Gaps = 28/205 (13%) Query: 177 TLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRV 234 +L R ++F Q N ML + G+ D LL++ CG G L LA+H +V Sbjct: 311 SLKIRISPDAFFQINTA-GAEMLYRTVGELAGVNSDTILLDICCGTGVIGLSLAQHTSQV 369 Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294 L +E+ + +VE AR+ A N + N + +++ + + +E D S Sbjct: 370 LGIELVEQAVEDARWTAAYNGITNSEFHTGRAEKILPGLLKSKE-------DGQSI---V 419 Query: 295 IFVDPPRSGLDDATVGMV---QAYPHILYISC--------NPDSLCRDLS----ILSTTH 339 V+P R+GL V + +A ++++SC N LC + +L Sbjct: 420 AVVNPARAGLHYKVVQAIRNCRAIRRLVFVSCKLHGETTRNVIELCCPPNPAKKLLGEPF 479 Query: 340 TIERLALFDQFPYTRHMECGVLLVR 364 +++ D FP+T H E +L R Sbjct: 480 LLQQAVPVDLFPHTPHCELVLLFSR 504 >gi|226355286|ref|YP_002785026.1| (Uracil-5)-methyltransferase [Deinococcus deserti VCD115] gi|226317276|gb|ACO45272.1| putative (Uracil-5)-methyltransferase [Deinococcus deserti VCD115] Length = 410 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 47/184 (25%), Positives = 81/184 (44%), Gaps = 24/184 (13%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 F Q N L ++ AA +GD ++LY G+G LA F +V ++ A + Sbjct: 247 TGFAQVNP--QAAGLAYLRAAQLAGEGDHAVDLYGGSGAIGRHLASAFRKVTVLDSAPEA 304 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 + R ++A + +NV + R + R ++ I VDPPR+G Sbjct: 305 LSRGRQDVAVSGEHNV-------------VYRSGDAARFSELGT-----DVIVVDPPRAG 346 Query: 304 LDDATVGMVQAYP--HILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGV 360 LD+ + A ++Y+SC+P + RD+ +L + + D +P T H+E Sbjct: 347 LDEEAREQIHASTADRLVYVSCDPATWARDVGDLLRRGWKLGEVTPHDFYPQTSHVEIVS 406 Query: 361 LLVR 364 +L R Sbjct: 407 VLNR 410 >gi|83950748|ref|ZP_00959481.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Roseovarius nubinhibens ISM] gi|83838647|gb|EAP77943.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Roseovarius nubinhibens ISM] Length = 410 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 47/175 (26%), Positives = 81/175 (46%), Gaps = 16/175 (9%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 +F Q ++ V AA G G +++L+ G G FS LA +V AVE A+ + Sbjct: 239 GAFLQATREGEAALVADVRAALAGA-GKVVDLFAGCGTFSFPLA-ETAQVHAVEGARDMI 296 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 +A + NV+ +R + E R L++ D + +DPPR+G Sbjct: 297 DALQAGW-----RNVQGLRTMTAEVRDLFRDPLRAEELREYD-------GVCLDPPRAGA 344 Query: 305 DDATVGMVQA-YPHILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHME 357 + + Q+ I Y+SC+P S RD +L+ + + + + DQF ++ H+E Sbjct: 345 EAQVRELAQSDVARIAYVSCSPASFARDARHLLAAGYEMGPVRVVDQFRWSSHVE 399 >gi|229816581|ref|ZP_04446880.1| hypothetical protein COLINT_03639 [Collinsella intestinalis DSM 13280] gi|229807916|gb|EEP43719.1| hypothetical protein COLINT_03639 [Collinsella intestinalis DSM 13280] Length = 421 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 53/167 (31%), Positives = 77/167 (46%), Gaps = 30/167 (17%) Query: 213 LLELYCGNGNFSLVLA-----RHFDRVL-AVEIAKPSVEAARYNIAANHVNNVK--IVRM 264 +L+ YCG+G L A + FD L VE V A N N ++ I R Sbjct: 271 VLDTYCGSGTIGLAAAAAARKQGFDIALTGVERNPEGVRDAVRNAELNDLDATSSFIARD 330 Query: 265 SSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG-----LDDATVGMVQAYPHIL 319 +++ +A +R +D+ + +DPPR+G LD A+ A I+ Sbjct: 331 ATEYMLEAA------HRGDHVDV-------LVMDPPRAGSTPEFLDAASS---LAPRRIV 374 Query: 320 YISCNPDSLCRDLSILS-TTHTIERLALFDQFPYTRHMECGVLLVRK 365 YISCNP + RDL L T + +ERL D FP+T H+E +L R Sbjct: 375 YISCNPHTQVRDLEHLGRTGYRLERLTPVDLFPHTEHVETVAILTRP 421 >gi|255282151|ref|ZP_05346706.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bryantella formatexigens DSM 14469] gi|255267099|gb|EET60304.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bryantella formatexigens DSM 14469] Length = 533 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 63/222 (28%), Positives = 104/222 (46%), Gaps = 26/222 (11%) Query: 142 LHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEW 201 LH + + ++++T I +D+ E L L ++ SF Q N+ + +L Sbjct: 317 LHTVNDSLADVIKSDRTDILYGKDFFYEELL----GLRFKISPFSFFQTNS-LGAEVLYD 371 Query: 202 VLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259 + G D + +LY G G + +LA +V+ VEI + +V AA+ N AAN ++N Sbjct: 372 RARSYVGETKDKTIFDLYSGTGTIAQILAPVARKVVGVEIVEEAVAAAKENAAANGLDNC 431 Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY---P 316 EF + LK ID + I +DPPR G+ + + A+ Sbjct: 432 --------EFLAG-------DVLKVIDSVEEKPDIIVLDPPRDGIHPKALEKIGAHIRAK 476 Query: 317 HILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHME 357 ++YISC P SL RDL+ L + ++R+ D FP + H+E Sbjct: 477 RMIYISCKPTSLARDLAELQKYGYQVDRVCCVDMFPGSVHVE 518 >gi|188584015|ref|YP_001927460.1| (Uracil-5)-methyltransferase [Methylobacterium populi BJ001] gi|179347513|gb|ACB82925.1| (Uracil-5)-methyltransferase [Methylobacterium populi BJ001] Length = 437 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 43/159 (27%), Positives = 75/159 (47%), Gaps = 17/159 (10%) Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274 +L+CG+G F+L LA V A E ++ A + + R+++ E R Sbjct: 284 DLFCGSGPFALALAAGGREVHAAEGEAAAITA----LTRAYRAGAGYARITA-EARDLFR 338 Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA-YPHILYISCNPDSLCRDLS 333 R L +D + DPPR+G + + ++ P ++ ++C+P + RD + Sbjct: 339 RPLLGPELDALD-------AVVFDPPRAGAEAQARRIAESKVPLVVGVACDPGTFARDAA 391 Query: 334 ILST-THTIERLALFDQFPYTRHME-CGVL--LVRKPSG 368 L T + +ER+ DQF ++ H+E GV RKP+G Sbjct: 392 TLITGGYRLERVTPVDQFAWSAHVELVGVFRKAARKPAG 430 >gi|119385304|ref|YP_916360.1| (Uracil-5)-methyltransferase [Paracoccus denitrificans PD1222] gi|119375071|gb|ABL70664.1| 23S rRNA m(5)U-1939 methyltransferase [Paracoccus denitrificans PD1222] Length = 406 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 43/149 (28%), Positives = 73/149 (48%), Gaps = 16/149 (10%) Query: 211 GDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270 G +L+L+ G G FSL LA + V AVE ++A + AA ++ + + E Sbjct: 264 GRMLDLFAGCGTFSLPLAETAE-VHAVEGLAAPLQA--LDAAARQAQGLRRI---TTEIR 317 Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA-YPHILYISCNPDSLC 329 RR + L + I +DPPR+G + + QA P + ++SC+P + Sbjct: 318 DLARRPLMPDELA--------YDAIVIDPPRAGAEAQAREIAQAQVPTLAWVSCDPVTFA 369 Query: 330 RDLSILS-TTHTIERLALFDQFPYTRHME 357 RD IL+ + + +L + DQF ++ H+E Sbjct: 370 RDARILAENGYRLCQLFVVDQFRWSPHVE 398 >gi|315634838|ref|ZP_07890120.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Aggregatibacter segnis ATCC 33393] gi|315476390|gb|EFU67140.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Aggregatibacter segnis ATCC 33393] Length = 391 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 30/74 (40%), Positives = 45/74 (60%), Gaps = 3/74 (4%) Query: 295 IFVDPPRSGLDDATVGMV-QAYPH-ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPY 352 + V+PPR G+ + + + PH ILY SCN +++ +DL L T + +E++ LFD FP+ Sbjct: 319 VIVNPPRRGIGQSLAEFLNEMRPHFILYSSCNAETMGKDLQSL-THYQMEKIQLFDMFPH 377 Query: 353 TRHMECGVLLVRKP 366 T H E VLL P Sbjct: 378 TSHYEVLVLLRLTP 391 >gi|320093829|ref|ZP_08025674.1| hypothetical protein HMPREF9005_0286 [Actinomyces sp. oral taxon 178 str. F0338] gi|319979262|gb|EFW10760.1| hypothetical protein HMPREF9005_0286 [Actinomyces sp. oral taxon 178 str. F0338] Length = 445 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 53/201 (26%), Positives = 84/201 (41%), Gaps = 19/201 (9%) Query: 171 LTVAGRTLIYRQIENSFTQPNA-GINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLAR 229 + + G +Y F Q + G V E + AA G +LELY G G F+ LAR Sbjct: 256 VEIGGEEHVYGVRPTGFWQTHVRGAQVLTEEVLDAARAETGGAVLELYSGAGLFTAPLAR 315 Query: 230 ---HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDID 286 R+ ++E + +V A N+A I + + + R D+ Sbjct: 316 AVGEGGRLASLEGDEGAVADAAENLAPFPWAQTFIGGIDAHGVAELAG---GLGRAPDV- 371 Query: 287 IHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILSTT-HTIER 343 + DPPR+G + A P ++ +SC+P + RDL L+ + +E Sbjct: 372 --------VVADPPRAGAGRQVCEAMAALGAPRLVLVSCDPAAGARDLRALAGAGYRLES 423 Query: 344 LALFDQFPYTRHMECGVLLVR 364 L +D FP+T H+E L R Sbjct: 424 LRAWDLFPHTHHVEIVAALTR 444 >gi|296235982|ref|XP_002763131.1| PREDICTED: tRNA (uracil-5-)-methyltransferase homolog isoform 2 [Callithrix jacchus] Length = 459 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 52/205 (25%), Positives = 89/205 (43%), Gaps = 28/205 (13%) Query: 177 TLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRV 234 +L R ++F Q N ML + G+ D LL++ CG G L LA+H +V Sbjct: 266 SLKIRISPDAFFQINTA-GAEMLYRTVGELAGVNSDTILLDICCGTGVIGLSLAQHTSQV 324 Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294 L +E+ + +VE AR+ A N + N + +++ + + +E D S Sbjct: 325 LGIELVEQAVEDARWTAAYNGITNSEFHTGRAEKILPGLLKSKE-------DGQSI---V 374 Query: 295 IFVDPPRSGLDDATVGMV---QAYPHILYISC--------NPDSLCRDLS----ILSTTH 339 V+P R+GL V + +A ++++SC N LC + +L Sbjct: 375 AVVNPARAGLHYKVVQAIRNCRAIRRLVFVSCKLHGETTRNVIELCCPPNPAKKLLGEPF 434 Query: 340 TIERLALFDQFPYTRHMECGVLLVR 364 +++ D FP+T H E +L R Sbjct: 435 LLQQAVPVDLFPHTPHCELVLLFSR 459 >gi|260460312|ref|ZP_05808564.1| (Uracil-5)-methyltransferase [Mesorhizobium opportunistum WSM2075] gi|259033957|gb|EEW35216.1| (Uracil-5)-methyltransferase [Mesorhizobium opportunistum WSM2075] Length = 411 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 45/154 (29%), Positives = 77/154 (50%), Gaps = 16/154 (10%) Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274 +L+ G G+F+L LA + V AVE ++ A + + ++K V ++ R Sbjct: 268 DLFAGCGSFALRLAAKSE-VHAVEGDAAALSA--LDRGSRFATSLKRVTGERRDL---FR 321 Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA-YPHILYISCNPDSLCRDLS 333 R F L F + DPPR+G +D + + ++ ++ +SCNP +L RDL Sbjct: 322 RPLTFKELN-------AFDGLVFDPPRAGAEDQSKQIARSDVAYVAAVSCNPVTLARDLR 374 Query: 334 IL-STTHTIERLALFDQFPYTRHMECGVLLVRKP 366 IL +T++ + DQF ++ H+E V L+ KP Sbjct: 375 ILIDGGYTLKSVTPIDQFLWSPHVE-AVALLEKP 407 >gi|254471699|ref|ZP_05085100.1| putative RNA methyltransferase [Pseudovibrio sp. JE062] gi|211958901|gb|EEA94100.1| putative RNA methyltransferase [Pseudovibrio sp. JE062] Length = 421 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 58/214 (27%), Positives = 90/214 (42%), Gaps = 33/214 (15%) Query: 170 RLTVAGRTLIYRQIENSFTQ-PNAGINVHMLEWVLAA--TKGIQGDLL-----------E 215 RLTV G T+I +I A + + ++ AA + GDLL + Sbjct: 220 RLTVDGETII--EIRPPLLDMSGAAVPIPAGGFIQAALSAENTMGDLLAEGLKGCKRVAD 277 Query: 216 LYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275 L+CG G + + F V AVE S++A + +K V ++ Sbjct: 278 LFCGAGTLTFKIG-QFANVHAVEGEASSLKALDQGL--RRAKGLKKVTTERRDL------ 328 Query: 276 EREFNR---LKDIDIHSYRFKTIFVDPPRSG-LDDATVGMVQAYPHILYISCNPDSLCRD 331 F R K++D + + DPPR+G L A I+ +SC+P S RD Sbjct: 329 ---FRRPIVAKELDNFGKGYDGVVFDPPRAGALAQAQELAKSPVKKIVAVSCSPASFVRD 385 Query: 332 L-SILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 + +L + I+R+ DQF Y+ H+E LL R Sbjct: 386 MRELLDGGYEIKRVVPIDQFLYSPHVEVVALLER 419 >gi|90019775|ref|YP_525602.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Saccharophagus degradans 2-40] gi|89949375|gb|ABD79390.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Saccharophagus degradans 2-40] Length = 408 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 51/178 (28%), Positives = 84/178 (47%), Gaps = 22/178 (12%) Query: 187 FTQPNAGINVHMLEWVLA--ATKGIQGDLLELYCGNGNFSLVL-ARHFDRVLAVEIAKPS 243 F Q N+ N M +W+ A + +EL+CG+GNF+ V+ A F V AVE+ + Sbjct: 236 FMQANSSQNKLMQDWLAERLARVDLANPAIELFCGSGNFTEVIAAAGFPAVAAVEVEGDA 295 Query: 244 VEAARYNIAAN-HVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302 + A + N V+ + + E N LK + KT+ +DPPR Sbjct: 296 LSALQAKALTNVSVHGINLYEEGGLE-----------NALKT----QPKAKTLVLDPPRD 340 Query: 303 GLDDATVGMVQAYP--HILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHME 357 GL + + ++ ILYISC+ + RD++ + + + + DQFP+T H+E Sbjct: 341 GLKERAALLKKSCKIRDILYISCDLATFTRDITDLCGAGYKLVAVQPVDQFPHTPHVE 398 >gi|170781047|ref|YP_001709379.1| putative RNA methyltransferase [Clavibacter michiganensis subsp. sepedonicus] gi|169155615|emb|CAQ00732.1| putative RNA methyltransferase [Clavibacter michiganensis subsp. sepedonicus] Length = 441 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 46/167 (27%), Positives = 86/167 (51%), Gaps = 27/167 (16%) Query: 214 LELYCGNGNFSLVLARHFD---RVLAVEIAKPSVEAARYNIA-----ANHVNNV-KIVRM 264 L+LY G G + + F R+ +VE + + E A N+A A+ + V + ++ Sbjct: 289 LDLYGGVGLLAAAVGDRFGDTTRITSVESDEVATEFAGDNLAEWVGAASLTSRVDRYLQQ 348 Query: 265 SSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYIS 322 ++E T A RR RL+ T+ +DPPR+G V + + +P ++Y++ Sbjct: 349 LAREATPAERR-----RLQG--------ATVVLDPPRAGAKKPVVDALAELHPAQVVYVA 395 Query: 323 CNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVRKPSG 368 C+P +L RD+++ + + + + +D FP+T H+E +LV P+G Sbjct: 396 CDPVALARDVALFAERGYELRSVRSYDLFPHTHHVESVAVLV--PAG 440 >gi|311276624|ref|XP_003135289.1| PREDICTED: tRNA (uracil-5-)-methyltransferase homolog [Sus scrofa] Length = 657 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 50/204 (24%), Positives = 86/204 (42%), Gaps = 28/204 (13%) Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVL 235 L R ++F Q N ML + G+ D LL++ CG G L LA++ +VL Sbjct: 465 LKIRISPDAFFQINTA-GAEMLYRTVGELSGVNSDTILLDICCGTGVIGLSLAQYTSQVL 523 Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295 +E+ + +VE AR+ A N + N + +++ + + +E +F Sbjct: 524 GIELVEQAVEDARWTAAFNGITNCEFHTGRAEKILPQLLKSKE----------DGQFIVA 573 Query: 296 FVDPPRSGLDDATVGMV---QAYPHILYISCNPDS---------LCRDLS---ILSTTHT 340 V+P R+GL V + +A ++++SC P C S +L Sbjct: 574 VVNPARAGLHYQVVQAIRNCRAIRTLVFVSCKPHGETTRNIIELCCPSNSAKKLLGEPFV 633 Query: 341 IERLALFDQFPYTRHMECGVLLVR 364 + + D FP+T H E +L R Sbjct: 634 LRQAVPVDLFPHTPHCELVLLFTR 657 >gi|167957196|ref|ZP_02544270.1| RNA methyltransferase, TrmA family protein [candidate division TM7 single-cell isolate TM7c] Length = 130 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 29/73 (39%), Positives = 42/73 (57%), Gaps = 2/73 (2%) Query: 295 IFVDPPRSGLDDATVG--MVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPY 352 + VDPPR+GL V + P I+Y+SCNP + RD+S+L + I ++ FP Sbjct: 56 VIVDPPRAGLHADVVRRLLETTPPRIIYLSCNPVTQARDVSLLQEKYEITHHQGYNFFPR 115 Query: 353 TRHMECGVLLVRK 365 T H+E V+L RK Sbjct: 116 TPHIEHLVILDRK 128 >gi|30249809|ref|NP_841879.1| SAM-binding motif-containing protein [Nitrosomonas europaea ATCC 19718] gi|50401755|sp|Q82TM7|Y1857_NITEU RecName: Full=Uncharacterized RNA methyltransferase NE1857 gi|30180846|emb|CAD85768.1| SAM (and some other nucleotide) binding motif [Nitrosomonas europaea ATCC 19718] Length = 393 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 50/181 (27%), Positives = 77/181 (42%), Gaps = 22/181 (12%) Query: 184 ENSFTQPNAGINVHMLEWVLAATK--GIQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIA 240 + F Q N N M W+ A + G ++EL+CG+GNF+ V+A+ +LA E Sbjct: 210 KQPFRQGNDAQNQWMRSWLKYALEQHGHSHKIVELFCGSGNFTEVIAQTGCPEILAYEAD 269 Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300 ++ R N+ V + + + ++D I + +DPP Sbjct: 270 PQAITVLRQK-------NLPGVDARTADLYHPFIWKILKKNVQDAGI-------LVLDPP 315 Query: 301 RSGLDDATVGMVQAYPH---ILYISCNPDSLCRDLSILSTTH-TIERLALFDQFPYTRHM 356 RSGL G A+ I YISC+P + RD I + L D FP+T H+ Sbjct: 316 RSGLK-TLRGFFDAFAALETICYISCDPVTFARDAWIFCKNGWKFTDIQLIDLFPHTPHI 374 Query: 357 E 357 E Sbjct: 375 E 375 >gi|251791917|ref|YP_003006637.1| 23S rRNA methyluridine methyltransferase [Aggregatibacter aphrophilus NJ8700] gi|247533304|gb|ACS96550.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Aggregatibacter aphrophilus NJ8700] Length = 391 Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 30/73 (41%), Positives = 46/73 (63%), Gaps = 3/73 (4%) Query: 295 IFVDPPRSGLDDA-TVGMVQAYPH-ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPY 352 + V+PPR G+ A + + + PH ILY SCN +++ +DL L T + + ++ LFD FP+ Sbjct: 319 VIVNPPRRGIGKALSEYLNEMQPHFILYSSCNAETMSKDLQSL-THYQLGKIQLFDMFPH 377 Query: 353 TRHMECGVLLVRK 365 T H E VLL R+ Sbjct: 378 TSHYEVLVLLKRR 390 >gi|261868606|ref|YP_003256528.1| 23S rRNA methyluridine methyltransferase [Aggregatibacter actinomycetemcomitans D11S-1] gi|261413938|gb|ACX83309.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Aggregatibacter actinomycetemcomitans D11S-1] Length = 165 Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 31/70 (44%), Positives = 42/70 (60%), Gaps = 3/70 (4%) Query: 295 IFVDPPRSGLDDATVGMVQAY-PH-ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPY 352 I V+PPR G+ + A PH ILY SCN +++ +DL L T + E++ LFD FP+ Sbjct: 93 IIVNPPRRGVGKTLAEFLNAMQPHFILYSSCNAETMGKDLQSL-THYQSEKIQLFDMFPH 151 Query: 353 TRHMECGVLL 362 T H E VLL Sbjct: 152 TAHYEVLVLL 161 >gi|198433704|ref|XP_002130635.1| PREDICTED: similar to HpaII tiny fragments locus 9c [Ciona intestinalis] Length = 587 Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 44/165 (26%), Positives = 76/165 (46%), Gaps = 22/165 (13%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI-VRMSSKEFTQ 271 LL++ CG G L L+ +R++ V+I + ++ A N N++ N + V + + Sbjct: 427 LLDVCCGTGTIGLTLSSCVNRLVGVDICEQAIIDAVKNATLNNITNAEFYVGKAEDVLPK 486 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP---HILYISCNPD-- 326 A+ N + + + VDPPR GL + +++ P +++Y+SC+ D Sbjct: 487 AIESLSGINSMNLVAV---------VDPPRCGLHAKVIKVIRQCPAIQYLIYVSCSVDQA 537 Query: 327 -----SLCRDLSI-LSTTHTIERLA-LFDQFPYTRHMECGVLLVR 364 LCR S L+ LA D FP+T+H E +L R Sbjct: 538 KTNFVDLCRPQSKRLNGPPFKPMLAQPVDLFPHTKHCEVVLLFKR 582 >gi|297260579|ref|XP_002798309.1| PREDICTED: tRNA (uracil-5-)-methyltransferase homolog A-like [Macaca mulatta] Length = 566 Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 48/170 (28%), Positives = 70/170 (41%), Gaps = 39/170 (22%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +L++ CG G L LAR RV+ VE+ +VE AR N N + R++S+ Sbjct: 392 VLDVCCGTGTIGLALARKVKRVIGVELCPEAVEDARVNAQDNGEWQGR-GRLASQHL--- 447 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHI---LYISCNPDS-- 327 +DPPR+GL + ++ +I LY+SCNP + Sbjct: 448 ---------------------VAILDPPRAGLHSKVILAIRRAENIRRLLYVSCNPRAAM 486 Query: 328 -----LCRDLS--ILSTTHTIERLALFDQFPYTRHMECGVLL--VRKPSG 368 LCR S + T + D FP T H E +L V P+G Sbjct: 487 GNFVDLCRAPSNRVKGTPFRPVKAVAVDLFPQTPHCEMLILFERVEHPNG 536 >gi|158316945|ref|YP_001509453.1| deoxyribonuclease [Frankia sp. EAN1pec] gi|158112350|gb|ABW14547.1| deoxyribonuclease/rho motif-related TRAM [Frankia sp. EAN1pec] Length = 517 Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 51/176 (28%), Positives = 77/176 (43%), Gaps = 28/176 (15%) Query: 214 LELYCGNGNFSLVLARHFD---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270 L+LYCG G F+ LA RV+A+E S EAA AA + ++ V + S T Sbjct: 330 LDLYCGAGLFAAFLAEAVGPTGRVIALE----SDEAA-VRSAARSLADLPWVSLRSLRVT 384 Query: 271 QAMRR------------EREFNRLKDIDIHSYRFKTIFV-DPPRSGLDDATVGMVQAYPH 317 A R + R + V DPPR+G M + H Sbjct: 385 PATVRGLVGAADQPAAPADGLPAGGATPGPARRAVDVAVLDPPRTGTGREV--MTELLAH 442 Query: 318 ----ILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVRKPSG 368 ++Y++C+P +L RD+++ + + + L FD FP T H+EC L P+G Sbjct: 443 RPRRVVYVACDPAALARDVAVAAGEGYRLTELRAFDLFPMTSHVECVATLEPAPAG 498 >gi|148557553|ref|YP_001265135.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Sphingomonas wittichii RW1] gi|148502743|gb|ABQ70997.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Sphingomonas wittichii RW1] Length = 405 Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 45/162 (27%), Positives = 75/162 (46%), Gaps = 21/162 (12%) Query: 202 VLAATKGIQGD---LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN 258 +LA + I GD + +L+ G G FSL LAR RV A E A+ +V + A + Sbjct: 252 LLAEVEAIVGDARLVADLFAGLGTFSLPLART-RRVYAAEGARDAV----LGLKAAADRS 306 Query: 259 VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD--ATVGMVQAYP 316 +++ + ++ RR + L RF + +DPPR+G + + Sbjct: 307 QRMIGIDHRDL---FRRPLDAAELD-------RFDVVVLDPPRAGAREQMPALAATTKVR 356 Query: 317 HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHME 357 I Y+SCNP + RD +++ +ER+ QF ++ H E Sbjct: 357 RIAYVSCNPSTFGRDARTLVEGGWRLERITPVGQFRWSTHTE 398 >gi|256825396|ref|YP_003149356.1| SAM-dependent methyltransferase, tRNA(uracil-5)-methyltransferase [Kytococcus sedentarius DSM 20547] gi|256688789|gb|ACV06591.1| SAM-dependent methyltransferase, tRNA(uracil-5)-methyltransferase [Kytococcus sedentarius DSM 20547] Length = 401 Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 42/149 (28%), Positives = 68/149 (45%), Gaps = 20/149 (13%) Query: 215 ELYCGNGNFSLVLA---RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271 +L+ G+G F++ LA VLAVE ++P+V+A + + + V + + + Sbjct: 257 DLFSGSGAFTVPLALAVGATGEVLAVEGSEPAVDACAAALEEHAPHTVA--DLVVGDVAE 314 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLC 329 + R L + +DPPR+G A V V A I Y++C+P +L Sbjct: 315 TLARWEGGTDL------------VVLDPPRTGAGPAVVEAVAASGASRIAYVACDPAALG 362 Query: 330 RDLS-ILSTTHTIERLALFDQFPYTRHME 357 RDL +ER+ FD F T H+E Sbjct: 363 RDLGHARQAGLEVERVVGFDAFGTTHHLE 391 >gi|116250743|ref|YP_766581.1| 23S rRNA (uracil-5-)-methyltransferase [Rhizobium leguminosarum bv. viciae 3841] gi|115255391|emb|CAK06466.1| putative 23S rRNA (uracil-5-)-methyltransferase [Rhizobium leguminosarum bv. viciae 3841] Length = 416 Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 55/175 (31%), Positives = 82/175 (46%), Gaps = 16/175 (9%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 FTQ M E V+A G + +L+ G+G FSL LAR RV AVE ++ Sbjct: 249 GGFTQATKPAEEAMAELVMAHA-GKAKRIADLFAGSGTFSLRLAR-IGRVHAVEAEAKAL 306 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 A + AA + +K V + ++ RR K D + DPPR+G Sbjct: 307 AALDH--AARNTQGLKPVTVEKRDL---FRRPLMTQEFKPYD-------AVVFDPPRAGA 354 Query: 305 DDATVGMVQ-AYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHME 357 + + + A I+ +SCNP +L RDL+IL + I ++ DQF +T H+E Sbjct: 355 EFQCQELARSAVKKIVAVSCNPLTLARDLAILVEGGYRITQVTPIDQFLWTSHVE 409 >gi|330889401|gb|EGH22062.1| 23S rRNA m(5)U1939 methyltransferase [Pseudomonas syringae pv. mori str. 301020] Length = 120 Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 37/129 (28%), Positives = 60/129 (46%), Gaps = 16/129 (12%) Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNRLKDIDIHSYRFKTI 295 VE VE A N +N ++NV+ + S+ T A D + F + Sbjct: 1 VEGVATMVERAAVNAMSNDLHNVQFFQADLSQPLTHA-------------DWAAEGFSAV 47 Query: 296 FVDPPRSGLDDATVGMVQAYPH-ILYISCNPDSLCRD-LSILSTTHTIERLALFDQFPYT 353 +DPPR G + + + +LY+SCNP +L RD + ++S + ++R + D FP T Sbjct: 48 LLDPPRDGAFEVVRQIRKTGARRLLYVSCNPATLARDTVELISQGYRLKRAGILDMFPQT 107 Query: 354 RHMECGVLL 362 H+E L Sbjct: 108 AHVEAMALF 116 >gi|300781039|ref|ZP_07090893.1| SAM-dependent methyltransferase [Corynebacterium genitalium ATCC 33030] gi|300532746|gb|EFK53807.1| SAM-dependent methyltransferase [Corynebacterium genitalium ATCC 33030] Length = 416 Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 55/211 (26%), Positives = 88/211 (41%), Gaps = 33/211 (15%) Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPN----AGINVHMLEWVLAATKGIQGDLLELYCGN 220 D E + VAG + +F Q + A + ++L+W AA + +LY G Sbjct: 225 DAATEIVPVAGEEFHFSFPPTAFWQAHLAAPAAYSAYILDW--AADDYGERTGWDLYGGV 282 Query: 221 GNF--SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR--- 275 G F S+ A D+ P + + Y+ AA + F MR Sbjct: 283 GLFVPSISAAMEGDQA-------PRIVSVDYSPAATRTPQPAL-----SAFNVDMRNQKV 330 Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCRDLS 333 E + L D + + +DPPR+G + V G+ P ++++ C+P + RDL+ Sbjct: 331 EAALDELPDPGL-------VVLDPPRTGAGENVVAGIAARRPQRVIHVGCDPATFTRDLA 383 Query: 334 ILSTT-HTIERLALFDQFPYTRHMECGVLLV 363 + +ER+AL D FP T H E LV Sbjct: 384 TWGAAGYVVERMALIDAFPATHHFEVLTSLV 414 >gi|330796726|ref|XP_003286416.1| hypothetical protein DICPUDRAFT_94161 [Dictyostelium purpureum] gi|325083611|gb|EGC37059.1| hypothetical protein DICPUDRAFT_94161 [Dictyostelium purpureum] Length = 645 Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 56/229 (24%), Positives = 100/229 (43%), Gaps = 45/229 (19%) Query: 158 TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGIN----VHMLEWVLAATKGIQGD- 212 T+ + +Y+ E+L G T +R N+F Q N +LEW G+ + Sbjct: 377 TETIMGPNYIHEKL--LGYT--FRVSPNAFFQVNTKATELLYSKVLEWA-----GVSENT 427 Query: 213 -LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271 LL++ CG G ++ + +EI+ ++ + N N++ N + +++ Sbjct: 428 HLLDVCCGTGTIGQCASKKVKCITGLEISPDAITDSISNAQLNNITNAEYTLGKAEDTLP 487 Query: 272 AM----RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY---PHILYISCN 324 +M ++ EF I I VDPPRSGL + + ++++ ++Y+SCN Sbjct: 488 SMLTKFSKDEEF-----IGI---------VDPPRSGLHNDVLKAIRSFEPMKKLVYVSCN 533 Query: 325 PDS-------LCRDLS--ILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 S LC+ +S + T + FD FP+T +E VL R Sbjct: 534 QKSLVQDSIKLCKGISKAMKGTPFIPTKAIAFDLFPHTDLVELVVLFER 582 >gi|264679193|ref|YP_003279100.1| RNA methyltransferase, TrmA family [Comamonas testosteroni CNB-2] gi|262209706|gb|ACY33804.1| RNA methyltransferase, TrmA family [Comamonas testosteroni CNB-2] Length = 519 Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 54/226 (23%), Positives = 92/226 (40%), Gaps = 42/226 (18%) Query: 175 GRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDR 233 G T+ ++ + FTQ N IN ++ L + + +++ +CG GNF+L +A Sbjct: 299 GITMPFKPTD--FTQVNPHINRVLVTRSLRLLDAKKDERVIDWFCGLGNFTLPIATMARE 356 Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293 VL +E ++ V+ + N AAN+V + +++S F F + I Sbjct: 357 VLGIEGSETLVKRSHENYAANNVTRSEDDKLASTSFVA----RNLFEMTPAMLIADGNSD 412 Query: 294 TIFVDPPRSG----------LDDATVGMVQA----------------------YPH-ILY 320 VDPPR G + +G Q +P I+Y Sbjct: 413 KWLVDPPREGAFALSKALADIHQIRIGAKQTGVASEEQPDLLPPLPEGQESWQFPKRIVY 472 Query: 321 ISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTRHMECGVLLVR 364 +SCNP +L RD +L + + + FP+T H+E + R Sbjct: 473 VSCNPATLARDAGLLVHQAGYRCVAAGVVNMFPHTAHVESMAVFER 518 >gi|167772924|ref|ZP_02444977.1| hypothetical protein ANACOL_04312 [Anaerotruncus colihominis DSM 17241] gi|167664857|gb|EDS08987.1| hypothetical protein ANACOL_04312 [Anaerotruncus colihominis DSM 17241] Length = 472 Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 53/184 (28%), Positives = 80/184 (43%), Gaps = 18/184 (9%) Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 SF Q N+ +L V A + G LL+LYCG G L LA +V+ VE+ + Sbjct: 298 SFYQVNS-PGAELLYGVAAEFAALTGTETLLDLYCGAGTIGLSLAHLCRQVIGVEVVPQA 356 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 VE A N A N + N + + + + RE R I +DPPR G Sbjct: 357 VENAVANAARNGIKNARFFCADAGQAAARLARE------------GVRPDVIVLDPPRKG 404 Query: 304 LDDATVGMVQAYP--HILYISCNPDSLCRDLSILSTT-HTIERLALFDQFPYTRHMECGV 360 + V A ++ +SC+ ++ RD + L+ ++ R D FP T H+E Sbjct: 405 CAPEVLDAVAAMAPRRVVMVSCDSATMARDCAALAAAGYSPRRCRPVDMFPRTAHVEAVA 464 Query: 361 LLVR 364 +L R Sbjct: 465 VLSR 468 >gi|313104036|sp|A4QP75|TRM2B_DANRE RecName: Full=tRNA (uracil-5-)-methyltransferase homolog-B; AltName: Full=TRM2 homolog B gi|220676971|emb|CAX12082.1| novel protein (zgc:162982) [Danio rerio] Length = 480 Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 54/207 (26%), Positives = 91/207 (43%), Gaps = 34/207 (16%) Query: 175 GRTLIYRQI--------ENSFTQPNAGINVHMLEWVLAATKG-IQGDLLELYCGNGNFSL 225 G+T IY ++ +SF Q N + + V ++ + G LL++ CG G + Sbjct: 277 GQTHIYEEVLGFKFRISPDSFFQVNREAAEALYKTVAELSQPCVGGTLLDVCCGTGAIGI 336 Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285 L+ +RV+ +E+ + +VE A++N A N V N + + A + E L Sbjct: 337 SLSPQMERVIGIELIEQAVEDAKFNAALNRVCNCEFL---------AGKAEVVLPDLMG- 386 Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHI---LYISCNPDS--------LCRDLSI 334 + S T V+P R+GL V ++ + I +YISC PD LC + + Sbjct: 387 SLSSDGGLTAVVNPSRAGLHYRVVRALRNHSAIRRLVYISCKPDGEAMRNFRELCCSVGL 446 Query: 335 LS--TTHTIERLAL--FDQFPYTRHME 357 + T + + D FP+T H E Sbjct: 447 VRRITGEAFKPVVAVPVDLFPHTPHCE 473 >gi|149918280|ref|ZP_01906771.1| RNA methyltransferase [Plesiocystis pacifica SIR-1] gi|149820806|gb|EDM80215.1| RNA methyltransferase [Plesiocystis pacifica SIR-1] Length = 485 Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 37/146 (25%), Positives = 62/146 (42%), Gaps = 25/146 (17%) Query: 214 LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273 L+LY G G + +L R F V E +H + + + ++ Q + Sbjct: 349 LDLYAGAGVTTGLLRRRFAEVRPCE---------------SHPESAAALGVPAQTAEQFL 393 Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRD 331 E NR + +PPR+GL +A + + P + +SCNPD+L D Sbjct: 394 ATRLEGNRPPPA--------LVIANPPRAGLGEAVCAQLLSLDAPRLHIMSCNPDTLAAD 445 Query: 332 LSILSTTHTIERLALFDQFPYTRHME 357 L L+ + ++ L +D P T H+E Sbjct: 446 LDRLAPGYVLDTLRAYDTLPQTPHVE 471 >gi|302327029|gb|ADL26230.1| putative RNA methyltransferase [Fibrobacter succinogenes subsp. succinogenes S85] Length = 445 Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 49/196 (25%), Positives = 92/196 (46%), Gaps = 23/196 (11%) Query: 181 RQIE---NSFTQPNAGINVHMLEWV-------LAATKGIQGDLLELYCGNGNFSLVLARH 230 R+IE + F Q N G+ ++E V LA+ K L++L+ G G F+ +L Sbjct: 247 RKIEADASVFFQSNLGLLPELVESVRKAVDEGLASGKSSDAWLIDLFSGVGFFACILQDK 306 Query: 231 FDRVLAVEIAKPSVEAARYNIAA------NHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284 F ++ VE + ++ A+ N++ + + V + E ++ Sbjct: 307 FRKITTVEREEGCLKHAKVNLSVPAAFPEDSAASRDCVASRTSEIENVSAPAEDWLVENV 366 Query: 285 IDIHSYRFKTIFVDPPRSGL-DDATVGMVQAYPH-ILYISCNPDSLCRDLSILSTTH-TI 341 +D+ + T+ VDPPR+GL +A +V++ + ++Y+SC+P +L RD + S + Sbjct: 367 VDVPA----TLIVDPPRTGLPKEALTAIVKSSVNRLIYVSCDPVTLARDFAKFSEAGFAL 422 Query: 342 ERLALFDQFPYTRHME 357 F +P T H+E Sbjct: 423 SHAEGFAFYPQTPHLE 438 >gi|326316746|ref|YP_004234418.1| TrmA family RNA methyltransferase [Acidovorax avenae subsp. avenae ATCC 19860] gi|323373582|gb|ADX45851.1| RNA methyltransferase, TrmA family [Acidovorax avenae subsp. avenae ATCC 19860] Length = 490 Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 52/215 (24%), Positives = 88/215 (40%), Gaps = 31/215 (14%) Query: 175 GRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDR 233 G T+ ++ + FTQ N IN ++ L + D +++ +CG GNF+L +A Sbjct: 281 GITMPFKPTD--FTQVNPHINRVLVTRALRLLDAGRADRVIDWFCGLGNFTLPIATQARE 338 Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293 V+ +E ++ V +R N N + + ++ F F ++ I Sbjct: 339 VVGIEGSEALVARSRENYRKNQDDRPQGQALAPTTFVA----RNLFEMTPEMLIADGVAD 394 Query: 294 TIFVDPPRSG----------LDDATVGM--VQAYP----------HILYISCNPDSLCRD 331 VDPPR G + A +G A P I+Y+SCNP +L RD Sbjct: 395 KWLVDPPREGAFALAKALADIHQARIGTEDAPALPASAEGWTPPQRIVYVSCNPATLARD 454 Query: 332 LSIL--STTHTIERLALFDQFPYTRHMECGVLLVR 364 +L + + + FP+T H+E + R Sbjct: 455 AGLLVHQAGYRCVAAGVVNMFPHTAHVESMAVFER 489 >gi|171545987|ref|NP_001116415.1| tRNA (uracil-5-)-methyltransferase homolog-B [Danio rerio] gi|141795408|gb|AAI39683.1| Zgc:162982 protein [Danio rerio] Length = 473 Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 54/207 (26%), Positives = 91/207 (43%), Gaps = 34/207 (16%) Query: 175 GRTLIYRQI--------ENSFTQPNAGINVHMLEWVLAATKG-IQGDLLELYCGNGNFSL 225 G+T IY ++ +SF Q N + + V ++ + G LL++ CG G + Sbjct: 270 GQTHIYEEVLGFKFRISPDSFFQVNREAAEALYKTVAELSQPCVGGTLLDVCCGTGAIGI 329 Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285 L+ +RV+ +E+ + +VE A++N A N V N + + A + E L Sbjct: 330 SLSPQMERVIGIELIEQAVEDAKFNAALNRVCNCEFL---------AGKAEVVLPDLMG- 379 Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHI---LYISCNPDS--------LCRDLSI 334 + S T V+P R+GL V ++ + I +YISC PD LC + + Sbjct: 380 SLSSDGGLTAVVNPSRAGLHYRVVRALRNHSAIRRLVYISCKPDGEAMRNFRELCCSVGL 439 Query: 335 LS--TTHTIERLAL--FDQFPYTRHME 357 + T + + D FP+T H E Sbjct: 440 VRRITGEAFKPVVAVPVDLFPHTPHCE 466 >gi|91978768|ref|YP_571427.1| RNA methyltransferase [Rhodopseudomonas palustris BisB5] gi|91685224|gb|ABE41526.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Rhodopseudomonas palustris BisB5] Length = 412 Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 45/152 (29%), Positives = 71/152 (46%), Gaps = 16/152 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + +L+CG G F+L LA RV A + P+V A AA + +K ++ ++ Sbjct: 272 IADLFCGVGPFALRLAAKA-RVFACDSDAPAVNA--LQKAAQATSGLKPIKAEPRDL--- 325 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA-YPHILYISCNPDSLCRD 331 RR L D D+ + DPPR G + + P I+ +SCN + RD Sbjct: 326 FRRPLAPPELLDFDV-------VLFDPPRQGAQAQAAQLAASRVPLIIAVSCNAQTFARD 378 Query: 332 LSIL-STTHTIERLALFDQFPYTRHME-CGVL 361 +L + +E++ DQF +T H+E GVL Sbjct: 379 ARLLIDGGYRLEKVTPVDQFRHTPHVELVGVL 410 >gi|164656170|ref|XP_001729213.1| hypothetical protein MGL_3680 [Malassezia globosa CBS 7966] gi|159103103|gb|EDP41999.1| hypothetical protein MGL_3680 [Malassezia globosa CBS 7966] Length = 411 Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 41/140 (29%), Positives = 69/140 (49%), Gaps = 6/140 (4%) Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYV--DERLTVAGRT--LIYR 181 +L++A R+RD++ + K L+ R + D V D + TV R + Sbjct: 248 VLNEAMTHERQRVRDSIRSYKNGATLLLRDSLCSADSDASTVVTDHKATVHERVGGTTFS 307 Query: 182 QIENSFTQPNAGINVHMLEWVLA--ATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEI 239 +F Q N I ++++V + +K L++ YCG+G F++ LA FD+V VEI Sbjct: 308 TPAGAFFQNNRSIIPLVMDYVKSQLPSKSSPQYLVDTYCGSGLFAICLAPLFDQVAGVEI 367 Query: 240 AKPSVEAARYNIAANHVNNV 259 + S+E A+ N N+V N Sbjct: 368 STSSIECAKANAKQNNVQNA 387 >gi|75674829|ref|YP_317250.1| putative RNA methyltransferase [Nitrobacter winogradskyi Nb-255] gi|74419699|gb|ABA03898.1| 23S rRNA m(5)U-1939 methyltransferase [Nitrobacter winogradskyi Nb-255] Length = 422 Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 45/155 (29%), Positives = 75/155 (48%), Gaps = 15/155 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++L+CG G F+L LA V A + +V A AA+ + +K ++ S++ Sbjct: 280 IVDLFCGVGPFALRLAMRAP-VAAFDSNAAAVTA--LQKAADTASRLKPIKAESRDL--- 333 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA-YPHILYISCNPDSLCRD 331 RR L+DID IF DPPR G + + + P I+ +SC+ + RD Sbjct: 334 FRRPLMAQELRDID------AAIF-DPPRQGAEAQSKQLAAGRIPVIVAVSCSAATFARD 386 Query: 332 LSIL-STTHTIERLALFDQFPYTRHMECGVLLVRK 365 IL +++E + DQF ++ H+E VR+ Sbjct: 387 ARILVDGGYSLEAVTPVDQFRHSAHVELVAKFVRR 421 >gi|281357982|ref|ZP_06244467.1| deoxyribonuclease/rho motif-related TRAM [Victivallis vadensis ATCC BAA-548] gi|281315640|gb|EFA99668.1| deoxyribonuclease/rho motif-related TRAM [Victivallis vadensis ATCC BAA-548] Length = 399 Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 45/149 (30%), Positives = 70/149 (46%), Gaps = 16/149 (10%) Query: 213 LLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271 ++LY G G FS V L VLAVE + + AAR+N+ N +++ + E + Sbjct: 256 FIDLYAGVGFFSAVALHAGVREVLAVESDEAAAAAARFNLKNFGAENPEVIAGDAAEALK 315 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD-DATVGMVQA-YPHILYISCNPDSLC 329 +++ + L + VDPPR GL A + + + +YISCNP + Sbjct: 316 SLKDAPASDAL------------LTVDPPRGGLTLKAAMALTGSTLDSFIYISCNPATWA 363 Query: 330 RDLSILSTTH-TIERLALFDQFPYTRHME 357 RD L+ T+ +L L + FP T H E Sbjct: 364 RDARRLAKGGFTLNKLRLVNMFPRTEHFE 392 >gi|227495508|ref|ZP_03925824.1| methyltransferase [Actinomyces coleocanis DSM 15436] gi|226831055|gb|EEH63438.1| methyltransferase [Actinomyces coleocanis DSM 15436] Length = 433 Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 38/153 (24%), Positives = 74/153 (48%), Gaps = 21/153 (13%) Query: 213 LLELYCGNGNFSLVLARHFD---RVLAVEIAKPSVEAARYNIAANHV-NNVKIVRMSSKE 268 ++EL+ G G F+ L + R++++E + +VE AR+N+ V ++++ + K Sbjct: 286 VIELFSGAGLFTYFLGQAAGAEGRLISIEGSLQAVEDARHNLRGLEVPRDLRVGNVDGKS 345 Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA---TVGMVQAYPHILYISCNP 325 ++A E R + + +DPPR+G +GM ++ +SC+P Sbjct: 346 MSRAWSDLGE------------RPRVVVLDPPRAGAGAELIRVIGM-SGPERVVLVSCDP 392 Query: 326 DSLCRDLS-ILSTTHTIERLALFDQFPYTRHME 357 + RD+ L+ + ++ L D FP T H+E Sbjct: 393 AAAARDIKDFLAAGYDLQNLYALDLFPQTHHVE 425 >gi|163745087|ref|ZP_02152447.1| RNA methyltransferase, putative [Oceanibulbus indolifex HEL-45] gi|161381905|gb|EDQ06314.1| RNA methyltransferase, putative [Oceanibulbus indolifex HEL-45] Length = 407 Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 41/157 (26%), Positives = 74/157 (47%), Gaps = 15/157 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++L+ G G FSL LA+ RV AVE +A K + + E Sbjct: 264 VVDLFAGCGTFSLPLAQKA-RVHAVE-----GDAEMIAALEGGWRRAKGAKPLTTETRDL 317 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA-YPHILYISCNPDSLCRD 331 RR + L +D + +DPPR+G + +++A P + Y+SC+P S RD Sbjct: 318 FRRPLLPDELAKVD-------AVVLDPPRAGAEAQVAEIIRAQVPRLAYVSCSPVSFARD 370 Query: 332 L-SILSTTHTIERLALFDQFPYTRHMECGVLLVRKPS 367 + ++++ + ++ + + DQF ++ H+E L S Sbjct: 371 VQKLVASGYRLDWIQVVDQFRWSSHVELAACLTAPES 407 >gi|85708796|ref|ZP_01039862.1| putative RNA methyltransferase [Erythrobacter sp. NAP1] gi|85690330|gb|EAQ30333.1| putative RNA methyltransferase [Erythrobacter sp. NAP1] Length = 255 Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 42/148 (28%), Positives = 68/148 (45%), Gaps = 19/148 (12%) Query: 215 ELYCGNGNFSLVLARHFD---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271 +L+ G G F+ LAR +VLAVE + +A+ R + T Sbjct: 115 DLFAGLGTFAFGLARSGPEGRKVLAVEA----------DQSAHLACKASAARSGGRVLT- 163 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA-YPHILYISCNPDSLCR 330 R+ N L+ ++ RF + +DPPR+G + ++ P +YISCNP S R Sbjct: 164 -THRDLFRNPLQAEELS--RFDGVLLDPPRAGAKAQISQLAKSDCPRTVYISCNPSSWAR 220 Query: 331 DLSIL-STTHTIERLALFDQFPYTRHME 357 D ++L + +E L QF ++ H+E Sbjct: 221 DAAVLCEAGYQLETLRPVGQFRWSTHVE 248 >gi|302866101|ref|YP_003834738.1| deoxyribonuclease/rho motif-related TRAM [Micromonospora aurantiaca ATCC 27029] gi|302568960|gb|ADL45162.1| deoxyribonuclease/rho motif-related TRAM [Micromonospora aurantiaca ATCC 27029] Length = 420 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 63/206 (30%), Positives = 89/206 (43%), Gaps = 47/206 (22%) Query: 170 RLTVAGRTLIYRQIENSFTQPNAGI-NVHMLEWVLAATKGIQG---DLLELYCGNGNFSL 225 R T AGR SFT P +G VH AA + G DLL+ G + L Sbjct: 234 RETAAGR---------SFTLPASGFWQVHP-----AAADALTGAVLDLLDPRPGETAWDL 279 Query: 226 ---------VLARHFD--RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274 LA D RV VE A V AAR N+A +++ V + + A+ Sbjct: 280 YGGAGLFAAALAERVDGARVTLVESAPDGVAAARQNLA-----DLRAVEVVAARVEAALS 334 Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCRDL 332 R R +D+ + +DPPRSG V G+V A P + Y++C+P + RD+ Sbjct: 335 RRRITG---PVDL-------VVLDPPRSGAGAPVVRGVVAAGPRAVAYVACDPAAFARDV 384 Query: 333 SILSTTH-TIERLALFDQFPYTRHME 357 + + L FD FP T+H+E Sbjct: 385 RTFAEAGWRLAALRGFDLFPMTQHVE 410 >gi|226366231|ref|YP_002784014.1| RNA methyltransferase [Rhodococcus opacus B4] gi|226244721|dbj|BAH55069.1| putative RNA methyltransferase [Rhodococcus opacus B4] Length = 419 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 46/153 (30%), Positives = 68/153 (44%), Gaps = 20/153 (13%) Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274 +LY G G F+ LA V +VE A+ +V + +A ++ VR A R Sbjct: 284 DLYGGVGVFAAALAGRAGHVDSVESARQAVADGKAALA-----DLPQVRF------HADR 332 Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHIL--YISCNPDSLCRDL 332 ER L + + +DPPR+G V V A ++ C+P S RD+ Sbjct: 333 VERAIAGLTSPP------RVVVLDPPRAGAGREVVEAVAAAGAERVVHVGCDPASFARDI 386 Query: 333 SI-LSTTHTIERLALFDQFPYTRHMECGVLLVR 364 + L + ++ L FD FP T H+EC LL R Sbjct: 387 GLYLGQGYHVDELRAFDAFPLTHHVECIALLTR 419 >gi|259417594|ref|ZP_05741513.1| tRNA (Uracil-5-)-methyltransferase superfamily [Silicibacter sp. TrichCH4B] gi|259346500|gb|EEW58314.1| tRNA (Uracil-5-)-methyltransferase superfamily [Silicibacter sp. TrichCH4B] Length = 414 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 40/152 (26%), Positives = 71/152 (46%), Gaps = 11/152 (7%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++L+ G G FSL LA + V AVE + ++A +K V +++ Sbjct: 269 IVDLFAGAGTFSLPLATGAE-VHAVEGEREMMQALEQGW--RKAQGLKKVTTETRDLF-- 323 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA-YPHILYISCNPDSLCRD 331 R ++D+ + + +DPPR+G + + +A P I Y+SCNP + RD Sbjct: 324 ----RNPLLVEDLRKFGQVYDAVVIDPPRAGAEAQVQELAKAKLPTISYVSCNPITFARD 379 Query: 332 LSIL-STTHTIERLALFDQFPYTRHMECGVLL 362 +L S + + + + DQF ++ H E L Sbjct: 380 AEVLVSAGYRLNWVQVVDQFRWSSHTELAASL 411 >gi|261416610|ref|YP_003250293.1| deoxyribonuclease/rho motif-related TRAM [Fibrobacter succinogenes subsp. succinogenes S85] gi|261373066|gb|ACX75811.1| deoxyribonuclease/rho motif-related TRAM [Fibrobacter succinogenes subsp. succinogenes S85] Length = 466 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 49/196 (25%), Positives = 92/196 (46%), Gaps = 23/196 (11%) Query: 181 RQIE---NSFTQPNAGINVHMLEWV-------LAATKGIQGDLLELYCGNGNFSLVLARH 230 R+IE + F Q N G+ ++E V LA+ K L++L+ G G F+ +L Sbjct: 268 RKIEADASVFFQSNLGLLPELVESVRKAVDEGLASGKSSDAWLIDLFSGVGFFACILQDK 327 Query: 231 FDRVLAVEIAKPSVEAARYNIAA------NHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284 F ++ VE + ++ A+ N++ + + V + E ++ Sbjct: 328 FRKITTVEREEGCLKHAKVNLSVPAAFPEDSAASRDCVASRTSEIENVSAPAEDWLVENV 387 Query: 285 IDIHSYRFKTIFVDPPRSGL-DDATVGMVQAYPH-ILYISCNPDSLCRDLSILSTTH-TI 341 +D+ + T+ VDPPR+GL +A +V++ + ++Y+SC+P +L RD + S + Sbjct: 388 VDVPA----TLIVDPPRTGLPKEALTAIVKSSVNRLIYVSCDPVTLARDFAKFSEAGFAL 443 Query: 342 ERLALFDQFPYTRHME 357 F +P T H+E Sbjct: 444 SHAEGFAFYPQTPHLE 459 >gi|257067572|ref|YP_003153827.1| 23S rRNA methyluridine methyltransferase [Brachybacterium faecium DSM 4810] gi|256558390|gb|ACU84237.1| SAM-dependent methyltransferase, tRNA(uracil-5)-methyltransferase [Brachybacterium faecium DSM 4810] Length = 388 Score = 53.1 bits (126), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 55/200 (27%), Positives = 84/200 (42%), Gaps = 26/200 (13%) Query: 177 TLIYRQIENSFTQPNAGINVHM----LEWV--LAATKGIQGD--LLELYCGNGNFSLVLA 228 TL R SF Q N + + W + A G +G + +LYCG G F+L +A Sbjct: 202 TLFAR--PQSFLQTNTAVAAQLYRQGAAWAREILAQPGAEGAPRVWDLYCGLGGFALHVA 259 Query: 229 RHFD--RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDID 286 R RV VE++ +++ AR A + + + + + A D+ Sbjct: 260 RAVPGARVTGVEVSPQAIDGAREAAEAAGLRSATFLAADATRW--AATEAAGPKGPPDLA 317 Query: 287 IHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTIERL 344 + V+PPR GL G ++ +LY SCNP +L DL+ + + I Sbjct: 318 V---------VNPPRRGLGPELAGWLERSGVADVLYSSCNPATLATDLAAMPSLQ-ITAG 367 Query: 345 ALFDQFPYTRHMECGVLLVR 364 D FP+T H E V L R Sbjct: 368 RYVDMFPHTAHAEVIVRLRR 387 >gi|120611974|ref|YP_971652.1| 23S rRNA 5-methyluridine methyltransferase [Acidovorax citrulli AAC00-1] gi|143580423|sp|A1TSE0|RUMA_ACIAC RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|120590438|gb|ABM33878.1| 23S rRNA m(5)U-1939 methyltransferase [Acidovorax citrulli AAC00-1] Length = 491 Score = 53.1 bits (126), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 61/248 (24%), Positives = 99/248 (39%), Gaps = 33/248 (13%) Query: 137 RLRDALHARKYQIQLIGRANKTKICLDRD--YVDERLTVAGRTLIYRQIENSFTQPNAGI 194 RLR A Q L + T LD ++ L G T+ ++ + FTQ N I Sbjct: 242 RLRSFAAAHGVQWWLQPKGPDTVHLLDEGGPQLNYALPDFGITMPFKPTD--FTQVNPHI 299 Query: 195 NVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAA 253 N ++ L + D +++ +CG GNF+L +A V+ +E ++ V +R N Sbjct: 300 NRVLVTRALRLLDAGRTDRVIDWFCGLGNFTLPIATQAREVVGIEGSEALVARSRENYRK 359 Query: 254 NHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG---------- 303 N + + ++ F F ++ I VDPPR G Sbjct: 360 NQDDRPQGQALAPATFVA----RNLFEMTPEMLIADGVADKWLVDPPREGAFALAKALAD 415 Query: 304 LDDATVGM--VQAYP----------HILYISCNPDSLCRDLSIL--STTHTIERLALFDQ 349 + A +G A P I+Y+SCNP +L RD +L + + + Sbjct: 416 IHQARIGAEDAPALPASAEGWTPPQRIVYVSCNPATLARDAGLLVHQAGYRCVAAGVVNM 475 Query: 350 FPYTRHME 357 FP+T H+E Sbjct: 476 FPHTAHVE 483 >gi|224098629|ref|XP_002187418.1| PREDICTED: similar to TRM2 tRNA methyltransferase 2 homolog B [Taeniopygia guttata] Length = 467 Score = 53.1 bits (126), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 50/171 (29%), Positives = 77/171 (45%), Gaps = 27/171 (15%) Query: 211 GD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268 GD LL++ CG G L LA +V+ VE+ + ++E A +N A N ++N E Sbjct: 307 GDTVLLDICCGTGTIGLSLAHQVSKVIGVEVVEKAIEDAEWNAAFNGISNC--------E 358 Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV---QAYPHILYISCNP 325 F + + E +L + R V+P R+GL V + ++ +LYISC P Sbjct: 359 F-HSGKAEAVLPQLLAL-WEDARPLVAVVNPSRAGLHHRVVRAIRNCRSIRRLLYISCKP 416 Query: 326 DS--------LCRDLSI---LSTTHTIERLAL-FDQFPYTRHMECGVLLVR 364 + LC L+ + LA+ FD FP+T H E +L R Sbjct: 417 EGEAMRNFLELCCPPDPQKKLAGEPFVPVLAIPFDMFPHTVHCELVLLFTR 467 >gi|242762804|ref|XP_002340452.1| tRNA(m5U54)methyltransferase [Talaromyces stipitatus ATCC 10500] gi|218723648|gb|EED23065.1| tRNA(m5U54)methyltransferase [Talaromyces stipitatus ATCC 10500] Length = 606 Score = 53.1 bits (126), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 46/168 (27%), Positives = 72/168 (42%), Gaps = 27/168 (16%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRM-SSKEFTQ 271 L++ Y G G F++ L++ F L ++I S+E AR N N++ N +S F++ Sbjct: 426 LIDAYSGCGLFTVTLSQMFKSSLGIDIDVHSIENARENAKHNNLPNTGFAAADASLLFSK 485 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLC 329 E I +DPPR G + + Y + Y+SCN + Sbjct: 486 VPYPPDE--------------TLIVIDPPRKGCSKDFLQQLLDYGPRRVAYVSCNVHTQA 531 Query: 330 RDLSIL-------STTHTIERLALFDQFPYTRHMECGVLL---VRKPS 367 RD+ L + IE + FD FP T H+E +L V+KP Sbjct: 532 RDVGFLVQNDSPNGIRYEIESIRGFDFFPQTGHVEGLAILNKVVKKPG 579 >gi|260913773|ref|ZP_05920249.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Pasteurella dagmatis ATCC 43325] gi|260632312|gb|EEX50487.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Pasteurella dagmatis ATCC 43325] Length = 322 Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 48/167 (28%), Positives = 74/167 (44%), Gaps = 34/167 (20%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAAN------------HVNNVK 260 L +L+CG G F L H VL +E I+A+ + NV Sbjct: 174 LWDLFCGVGGFGL----HCATVLQQTNPNKDIELTGIEISASAIAAATQSAQQLSLKNVS 229 Query: 261 IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY-PH-I 318 + +K F F + K D+ + V+PPR G+ + PH I Sbjct: 230 FQALDAKNFA--------FEQSKTPDL-------VIVNPPRRGIGTELAQFLNKLAPHFI 274 Query: 319 LYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 LY SCN +++ +DL+ L T + ++++ LFD FP++ H E LL RK Sbjct: 275 LYSSCNAETMGKDLTEL-TDYQLQKIQLFDMFPHSHHYEVLCLLERK 320 >gi|169840744|ref|ZP_02873857.1| RNA methyltransferase, TrmA family protein [candidate division TM7 single-cell isolate TM7a] Length = 120 Score = 52.8 bits (125), Expect = 8e-05, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 54/118 (45%), Gaps = 14/118 (11%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + +L+ G G ++++ +V +E+ + VE A N N + N + Sbjct: 12 VFDLFSGTGTIGQIVSKKAKQVYGIELVEEDVEKANENAKLNGIENAHFIAGDV------ 65 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSL 328 F +L + D + + I +DPPR+G+ + T+ + Y I+Y+SCNP L Sbjct: 66 ------FEKLDEFDKNGIKPDIIILDPPRAGVGEKTLNKLLKYDVKDIIYVSCNPKHL 117 >gi|294658876|ref|XP_002770855.1| DEHA2F20042p [Debaryomyces hansenii CBS767] gi|202953455|emb|CAR66375.1| DEHA2F20042p [Debaryomyces hansenii] Length = 582 Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 51/221 (23%), Positives = 106/221 (47%), Gaps = 26/221 (11%) Query: 159 KICLD--RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWV---LAATKGIQGDL 213 ++CL+ ++ + E++ +++ + F Q N I H+L+++ + + Sbjct: 367 RVCLNSHKNIITEKID----DFVFQFPASEFFQNNNSILSHVLDYIRFQIHKKPNSFKYI 422 Query: 214 LELYCGNGNFSLVLARHF---DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270 ++ YCG+G F + L++ +V +E+++ S+E A +N N ++ + ++ Sbjct: 423 VDTYCGSGFFGISLSKDIPEDGKVFGIEVSRLSIEHAVHNAKLNGLSVPERIQFIEGN-A 481 Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSL 328 A+ +EF I S + +DP R G + + +++ P I+Y+SCN + Sbjct: 482 NAIFTNKEFINSGIIGQDS----IVIIDPSRKGSNKKFMEQLLEFKPKLIIYVSCNVFTQ 537 Query: 329 CRDLSI---LSTTHT----IERLALFDQFPYTRHMECGVLL 362 RDL+ L + H I+ + FD FP T+H+E +L Sbjct: 538 ARDLADFDDLQSEHNCRYKIQDIVGFDFFPQTKHVESIAIL 578 >gi|325283297|ref|YP_004255838.1| (Uracil-5)-methyltransferase [Deinococcus proteolyticus MRP] gi|324315106|gb|ADY26221.1| (Uracil-5)-methyltransferase [Deinococcus proteolyticus MRP] Length = 419 Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 77/335 (22%), Positives = 131/335 (39%), Gaps = 54/335 (16%) Query: 43 YRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRA 102 YR A++ + G + + ++ + R R+ P LI + E+++ RL+P L A Sbjct: 126 YRSGAQYLVTPQG-----LAYRERREHRPRLVEHDP---LIAPFVAELLS--RLDPALLA 175 Query: 103 KLFQIDYLTS-QSDQAIVTLIYHRLLDDAWRECAIRLRDALH---ARKYQIQLIGRANK- 157 +I S S + + LI E LR A H A + L A K Sbjct: 176 PAGEIAVRGSFLSGEVVAALI-------GPGEPRTYLRAADHLMDAGAVGVSLAAPAGKR 228 Query: 158 ----TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPN-AGINVHMLEWVLAATKGIQGD 212 ++ V ER +I F+Q N A + L+ A +G Sbjct: 229 FSAGVRLIAGESTVPERFG----DVILPVSAVGFSQVNPAAAGLAYLQVAELAGQGSHA- 283 Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +LY G G L R F++V ++ + ++ R + N+ Sbjct: 284 -ADLYGGAGAIGRHLTRSFEQVTVLDSSAEALTRGRQAAGEAEIRNIT------------ 330 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCR 330 F + ++ + I VDPPR+GLD A G + A ++Y+SC+P + R Sbjct: 331 ------FQQGAAEELEELSAEVIVVDPPRAGLDPAVRGHIHASTADRLVYVSCDPATWAR 384 Query: 331 DLS-ILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D+ ++ + R+ D +P T H+E +L R Sbjct: 385 DVGDLVGRGWKLGRVVPHDFYPQTSHVEVVSVLER 419 >gi|241203350|ref|YP_002974446.1| (uracil-5)-methyltransferase [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240857240|gb|ACS54907.1| (Uracil-5)-methyltransferase [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 416 Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 54/175 (30%), Positives = 82/175 (46%), Gaps = 16/175 (9%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 FTQ M E V+A G + +L+ G+G FSL LAR RV AVE ++ Sbjct: 249 GGFTQATKPAEEAMAELVIAHA-GKSKRIADLFAGSGTFSLRLAR-IGRVHAVEAEAKAL 306 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 A + AA + +K V + ++ RR K D + DPPR+G Sbjct: 307 AALDH--AARNTQGLKPVTVEKRDL---FRRPLMTQEFKPYD-------AVVFDPPRAGA 354 Query: 305 DDATVGMVQA-YPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHME 357 + + ++ I+ +SCNP +L RDL+IL + I ++ DQF +T H+E Sbjct: 355 EFQCQELARSGVKKIVAVSCNPLTLARDLAILVEGGYRITQVTPIDQFLWTSHVE 409 >gi|289641282|ref|ZP_06473448.1| deoxyribonuclease/rho motif-related TRAM [Frankia symbiont of Datisca glomerata] gi|289508880|gb|EFD29813.1| deoxyribonuclease/rho motif-related TRAM [Frankia symbiont of Datisca glomerata] Length = 537 Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 27/72 (37%), Positives = 44/72 (61%), Gaps = 3/72 (4%) Query: 295 IFVDPPRSGLDDAT-VGMVQAYPH-ILYISCNPDSLCRDLSILST-THTIERLALFDQFP 351 + +DPPR+G A + ++ P + Y+SC+P SL RDL++ T +++ L FD FP Sbjct: 459 VVLDPPRAGAGRAVMLALLALRPRAVAYVSCDPASLARDLAVAVTQGYSLVTLRAFDLFP 518 Query: 352 YTRHMECGVLLV 363 T H+EC ++V Sbjct: 519 MTAHVECVAIMV 530 >gi|212529570|ref|XP_002144942.1| tRNA(m5U54)methyltransferase [Penicillium marneffei ATCC 18224] gi|210074340|gb|EEA28427.1| tRNA(m5U54)methyltransferase [Penicillium marneffei ATCC 18224] Length = 606 Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 43/162 (26%), Positives = 69/162 (42%), Gaps = 23/162 (14%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L++ Y G G F++ L++ F L ++I S+E AR N N++ N + Q Sbjct: 431 LIDAYSGCGLFTVTLSKMFKSSLGIDIDVHSIENARENAKYNNLPNTGFTAADATVLFQK 490 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCR 330 + + I +DPPR G + + Y I Y+SCN + R Sbjct: 491 V-------------PYPPDETLIVIDPPRKGCSKDFLRQLLEYGPRRIAYVSCNVHTQAR 537 Query: 331 DLSIL-------STTHTIERLALFDQFPYTRHMECGVLLVRK 365 D+ L + IE + FD FP T H+E G+ ++ K Sbjct: 538 DVGYLVQNDSPNGVRYDIESVRGFDFFPQTGHVE-GLAILNK 578 >gi|66800597|ref|XP_629224.1| hypothetical protein DDB_G0293244 [Dictyostelium discoideum AX4] gi|60462618|gb|EAL60821.1| hypothetical protein DDB_G0293244 [Dictyostelium discoideum AX4] Length = 646 Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 49/201 (24%), Positives = 88/201 (43%), Gaps = 27/201 (13%) Query: 180 YRQIENSFTQPNAGIN----VHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVL 235 +R N+F Q N +L+W + LL++ CG G +++ +V+ Sbjct: 397 FRVSANAFFQINTKATELLYSKVLDWAQVSQDTT---LLDICCGTGTIGQCISKKVKKVI 453 Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295 +EI+ +V + N N ++N + + +++ + + N KD + Sbjct: 454 GLEISPDAVIDSINNAKLNKIDNAEYLVGKAEDTLPTLLTKS--NGGKDQEFIG------ 505 Query: 296 FVDPPRSGLDDATVGMVQAYPHI---LYISCN-----PDS--LCRDLS--ILSTTHTIER 343 VDPPR GL + ++ + I +Y+SCN PD+ LC+ +S + T + Sbjct: 506 IVDPPRGGLHGDVLKAIRTFEPIKKLVYVSCNQNSLIPDAAKLCKGISKTMKGTPFVPTK 565 Query: 344 LALFDQFPYTRHMECGVLLVR 364 FD FP+T +E VL R Sbjct: 566 AIAFDLFPHTDLVELVVLFER 586 >gi|126272598|ref|XP_001369338.1| PREDICTED: similar to CXorf34 protein [Monodelphis domestica] Length = 469 Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 59/214 (27%), Positives = 89/214 (41%), Gaps = 52/214 (24%) Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAV 237 +R +F Q N+ V +L V+ G+ + LL+L G G SL LA H +VL+ Sbjct: 279 FRISPGAFFQINSAA-VEVLYRVVGELIGVDPNTLLLDLSQGTGATSLSLAPHTSQVLST 337 Query: 238 EIAKPSVEAARYNIA----------ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDI 287 + +VE A++ A A+HV NV + S+E Q+ Sbjct: 338 GLVGQAVEDAKWTTAFNGITNWEFHADHVENVVPQLLKSQEAGQS--------------- 382 Query: 288 HSYRFKTIFVDPPRSGLDDATVGMVQ---AYPHILYISCNPDS--------LC------R 330 + VDP R+GL+ V ++ A +LY+SC P+ LC + Sbjct: 383 -----PVVMVDPSRTGLNFQVVRAIRNCTAIRTLLYVSCYPEGKAKRNFLELCCPPDPGK 437 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 DL L + + D FP+T H E VL R Sbjct: 438 DL--LGEPFVLRQAVPVDMFPHTPHYELVVLFTR 469 >gi|85374206|ref|YP_458268.1| putative RNA methyltransferase [Erythrobacter litoralis HTCC2594] gi|84787289|gb|ABC63471.1| putative RNA methyltransferase [Erythrobacter litoralis HTCC2594] Length = 402 Score = 52.8 bits (125), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 47/171 (27%), Positives = 81/171 (47%), Gaps = 20/171 (11%) Query: 202 VLAATKGIQG--DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259 V AA++ + G + +L+ G G F+L LA ++VLA E ++ H+ Sbjct: 247 VAAASEWLAGHSPVADLFAGLGTFALSLAGP-EKVLAAEASR-----------GAHLACR 294 Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA-YPHI 318 + R+S K A R+ N +I + + +DPPR+G + + Q+ + Sbjct: 295 QAARLSGKPVF-AQHRDLFHNPYSAEEI--SKLAAVLLDPPRAGAREQVEQIAQSSVGRV 351 Query: 319 LYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVLLVRKPSG 368 +YISCNP S +D ++ ++ + QF ++ H+E L VR PSG Sbjct: 352 VYISCNPASWAKDAKRLVDAGFELKEVRPVGQFRWSTHVELASLFVR-PSG 401 >gi|332669814|ref|YP_004452822.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Cellulomonas fimi ATCC 484] gi|332338852|gb|AEE45435.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Cellulomonas fimi ATCC 484] Length = 375 Score = 52.8 bits (125), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 54/201 (26%), Positives = 82/201 (40%), Gaps = 25/201 (12%) Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSL 225 R+ V G L R SF Q N + + WV A + +LYCG G F+L Sbjct: 193 RMRVNGLDLHLR--PQSFFQTNTDVAAALYRQAATWVDDAAPA---SVWDLYCGVGGFAL 247 Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285 +A V+ VE + +V +A + A + + A+R +D+ Sbjct: 248 HVADGTRDVVGVETSGEAVASA--TLTARDAGLARTTFHADDATAFALRAAP-----RDV 300 Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILSTTHTIER 343 + V+PPR G+ G + ++Y SCN SL RDL+ + + + R Sbjct: 301 P------DLVVVNPPRRGIGADLAGWLDRSGVGRVVYSSCNAQSLARDLAAMPSLRPV-R 353 Query: 344 LALFDQFPYTRHMECGVLLVR 364 + D FP T H E LL R Sbjct: 354 GRVLDMFPQTTHYEVVTLLER 374 >gi|254788168|ref|YP_003075597.1| RNA methyltransferase, TrmA family [Teredinibacter turnerae T7901] gi|237687433|gb|ACR14697.1| RNA methyltransferase, TrmA family [Teredinibacter turnerae T7901] Length = 393 Score = 52.8 bits (125), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 46/179 (25%), Positives = 73/179 (40%), Gaps = 26/179 (14%) Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVE 245 F Q N+ N M W+ +EL+CG+GN + VL ++ AVE+ ++ Sbjct: 224 FKQGNSAQNTRMRAWLAERIAPGTQQAVELFCGSGNLTEVLCDAGVAKISAVEVVDEAIA 283 Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD 305 A R + A V + + R LK ++ + +DPPR G Sbjct: 284 ALRAKVLAG-VEPIVCDLFADDGLASVAR------ALKTAEL-------LVLDPPREGWK 329 Query: 306 DATVGMVQAYP------HILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHME 357 A+P +L +SC+ + RDLS L + + DQFP+T H+E Sbjct: 330 S----RAAAWPKNCQVRQVLSVSCDLATFTRDLSFFLDQGFRLVEVQPLDQFPHTPHIE 384 >gi|332185328|ref|ZP_08387077.1| hypothetical protein SUS17_262 [Sphingomonas sp. S17] gi|332015052|gb|EGI57108.1| hypothetical protein SUS17_262 [Sphingomonas sp. S17] Length = 398 Score = 52.8 bits (125), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 42/155 (27%), Positives = 66/155 (42%), Gaps = 19/155 (12%) Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274 +L+ G G F+L L +V A E A+ ++ + + AAN Sbjct: 259 DLFAGLGTFALALP---GKVYAAEGARDAILSLKG--AANACGRAVFAE----------- 302 Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA-YPHILYISCNPDSLCRDLS 333 R+ R RF I +DPPR+G D + A + Y+SCNP S RD Sbjct: 303 -HRDLYRRPLTKAELDRFDAIVLDPPRAGARDQAEALASAAVGAVAYVSCNPSSFARDAR 361 Query: 334 IL-STTHTIERLALFDQFPYTRHMECGVLLVRKPS 367 ++ ++E + QF ++ H+E VR+PS Sbjct: 362 MMVDQGWSLEWVQPVGQFRWSTHVELAARFVRQPS 396 >gi|225619621|ref|YP_002720878.1| TrmA family RNA methyltransferase [Brachyspira hyodysenteriae WA1] gi|225214440|gb|ACN83174.1| RNA methyltransferase, TrmA family [Brachyspira hyodysenteriae WA1] Length = 398 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 40/153 (26%), Positives = 71/153 (46%), Gaps = 30/153 (19%) Query: 213 LLELYCGNGNFSLVLA---RHFD---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266 ++ELY G+G F+ L + F+ + +A EI K SV + + Sbjct: 259 IVELYAGSGFFTSALENKIKSFNNHYKFIASEINKDSV-------------------LIA 299 Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV--GMVQAYPHILYISCN 324 ++ ++ E LK+ID Y + +DPPR G++ V + I+Y+SC+ Sbjct: 300 NKYDLKIKNEDALITLKNID---YDIDALILDPPREGMNKNVVEEIIRIKPKKIIYVSCD 356 Query: 325 PDSLCRDLSILSTTHTIERLALFDQFPYTRHME 357 P + RD+++L + + L + D F T H+E Sbjct: 357 PMTFARDINLLKEYYNLSDLNIIDMFADTYHIE 389 >gi|329121766|ref|ZP_08250383.1| 23S rRNA (uracil-5-)-methyltransferase [Dialister micraerophilus DSM 19965] gi|327468236|gb|EGF13722.1| 23S rRNA (uracil-5-)-methyltransferase [Dialister micraerophilus DSM 19965] Length = 133 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 36/139 (25%), Positives = 66/139 (47%), Gaps = 15/139 (10%) Query: 227 LARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDID 286 LA+ V+ +EI K ++E A+ N N + NV+ ++ L ++ Sbjct: 3 LAQKAKHVIGIEIIKDAIENAKENAKRNKIKNVEFHAADVAKY------------LPELA 50 Query: 287 IHSYRFKTIFVDPPRSGLDDATVGMV-QAYPH-ILYISCNPDSLCRDLSILSTT-HTIER 343 + + + +DP R+G D+ + + + P I+Y+SCN + RD+ LS + + + Sbjct: 51 KKGIKAEVVVLDPVRAGCDEKVIEAIGKINPERIVYVSCNVATQARDIERLSKKGYKLIK 110 Query: 344 LALFDQFPYTRHMECGVLL 362 + D FP T H+E LL Sbjct: 111 IQPIDMFPQTTHVETVALL 129 >gi|149640047|ref|XP_001513281.1| PREDICTED: hypothetical protein [Ornithorhynchus anatinus] Length = 481 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 49/168 (29%), Positives = 71/168 (42%), Gaps = 27/168 (16%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI-VRMSSKEFTQ 271 LL++ CG G L LA RVL VE+ + +VE AR+ A N ++N + + K Q Sbjct: 325 LLDICCGTGAIGLSLAPRVSRVLGVELIEQAVEDARWTAAFNGISNCEFHAGPAEKIVPQ 384 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHI---LYISCNPDS- 327 + + E L + V+P R+GL V ++ I +++SC P Sbjct: 385 LLVSQMEGRSLVAV-----------VNPARAGLHPRVVRAIRNCGPIRRLVFVSCKPHGE 433 Query: 328 -------LC--RDLS--ILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 LC D S +L E D FP+T H E VL R Sbjct: 434 AMRNFFELCCPPDASKKLLGEPFVPEEAVPVDLFPHTLHCELVVLFSR 481 >gi|261415209|ref|YP_003248892.1| (Uracil-5)-methyltransferase [Fibrobacter succinogenes subsp. succinogenes S85] gi|261371665|gb|ACX74410.1| (Uracil-5)-methyltransferase [Fibrobacter succinogenes subsp. succinogenes S85] gi|302328173|gb|ADL27374.1| tRNA (uracil-5-)-methyltransferase family protein [Fibrobacter succinogenes subsp. succinogenes S85] Length = 386 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 46/160 (28%), Positives = 68/160 (42%), Gaps = 14/160 (8%) Query: 210 QGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268 +GD L+LYCG G FS L VL VE PS++ A+ + N I + Sbjct: 237 KGDHFLDLYCGYGLFSFALGEAAKSVLGVEWEGPSIDCAKASARFLKKNYKFIAGKIDET 296 Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPD 326 F Q MR R + I +DPPR G + + + P +L+I C D Sbjct: 297 FVQ-MRLPRPIPGEPE---------RILLDPPRKGTEPGVIRALAMRKPVRVLHIFCGTD 346 Query: 327 SLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVRK 365 + L+ + ++ + D FP T H+E V L +K Sbjct: 347 EIPAALAEWERYGYRVKEVLPMDLFPGTPHLETLVALEKK 386 >gi|255025037|ref|ZP_05297023.1| hypothetical protein LmonocyFSL_18750 [Listeria monocytogenes FSL J1-208] Length = 160 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 33/119 (27%), Positives = 52/119 (43%), Gaps = 16/119 (13%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L++ YCG G A V ++I S+E A+ N N + NV +++ Sbjct: 54 LVDAYCGVGTIGQAFAGKVKEVRGMDIIPESIEDAKRNAEKNGIENVYYEVGKAEDVLPK 113 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM---VQAYPHILYISCNPDSL 328 +E +R + VDPPRSG D + V+A ++Y+SCNP +L Sbjct: 114 WVKE------------GFRPDAVIVDPPRSGCDQGLIKSLLEVEA-KQLVYVSCNPSTL 159 >gi|328773587|gb|EGF83624.1| hypothetical protein BATDEDRAFT_34298 [Batrachochytrium dendrobatidis JAM81] Length = 823 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 36/141 (25%), Positives = 61/141 (43%), Gaps = 25/141 (17%) Query: 203 LAATKGIQGD---LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259 LA++ I G LL+L CG G + LA HF +V+ VE+ + +++ A N N V N Sbjct: 655 LASSSPIDGSNTVLLDLCCGTGTIGITLASHFKKVVGVELVQEAIDNAIVNAQDNGVTNA 714 Query: 260 -----KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA 314 K+ + F + E + +DP R G++ + ++A Sbjct: 715 VYLCGKVEEKIGEVFRNHVGPEDQV--------------VAVLDPARVGVNGTVIAAIRA 760 Query: 315 ---YPHILYISCNPDSLCRDL 332 H++YISC+ C + Sbjct: 761 CRHLKHVVYISCDAKQACSNF 781 >gi|294892742|ref|XP_002774211.1| RNA m5u methyltransferase, putative [Perkinsus marinus ATCC 50983] gi|239879428|gb|EER06027.1| RNA m5u methyltransferase, putative [Perkinsus marinus ATCC 50983] Length = 517 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 48/171 (28%), Positives = 77/171 (45%), Gaps = 34/171 (19%) Query: 223 FSLVLARHFD---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279 F+ +L D RV +E+ +VE A+ + AN ++ SS F E Sbjct: 112 FACILGPKPDGKPRVYGLELVPDAVEDAKASARANKLD-------SSVRFIAGRAEETIE 164 Query: 280 NRLKDI--DIHSYRFKTIFVDPPRSGLDDATVGMVQAYP---HILYISCNPDSLCRDLSI 334 + +K+ DI + T+ VDPPRSGL + ++ I+Y+SCNPD+L RD+ Sbjct: 165 DVIKEACSDIQGDQKLTVIVDPPRSGLHPNVLRCLRRCSFINRIVYVSCNPDTLSRDVIQ 224 Query: 335 LSTTHT------------------IERLAL-FDQFPYTRHMECGVLLVRKP 366 L+ + ++ + D FP+T H E +LL R+P Sbjct: 225 LTKPEADYTAAGGQEGMKEEGGILVPKIIVPIDMFPHTYHCEAMLLLDREP 275 >gi|324116073|gb|EGC09997.1| rumB protein [Escherichia coli E1167] Length = 120 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 36/135 (26%), Positives = 62/135 (45%), Gaps = 18/135 (13%) Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292 ++ +EIA ++ A+ + A + ++ + S +F A E Sbjct: 2 QLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATAQGEVPEL------------- 48 Query: 293 KTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQF 350 + V+PPR G+ + A I+Y SCN ++ +D+ L + IER+ LFD F Sbjct: 49 --VLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELPG-YRIERVQLFDMF 105 Query: 351 PYTRHMECGVLLVRK 365 P+T H E LLV++ Sbjct: 106 PHTAHYEVLTLLVKQ 120 >gi|162450819|ref|YP_001613186.1| RNA methyltransferase [Sorangium cellulosum 'So ce 56'] gi|161161401|emb|CAN92706.1| RNA methyltransferase [Sorangium cellulosum 'So ce 56'] Length = 765 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 47/158 (29%), Positives = 69/158 (43%), Gaps = 16/158 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS-KEFTQ 271 +L+LY G+G SL LA+ +RVL VE P+ AR A ++ VR E Sbjct: 325 ILDLYGGSGAISLALAQGGNRVLMVESFAPAAANARAAAEAQGLSQRVEVRTGDVAEIVG 384 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLC 329 ++ E +F I V+PPR G+ + P ++Y+SC+PD+L Sbjct: 385 SLVNSSE------------KFDGIVVNPPRRGVSPTAREAIARLGAPLLVYVSCDPDTLA 432 Query: 330 RDLS-ILSTTHTIERLALFDQFPYTRHMECGVLLVRKP 366 RDL ++ L D P T +E L R P Sbjct: 433 RDLDHFCRLGYSSTELTPLDMIPLTEEIETIAALRRTP 470 >gi|325954001|ref|YP_004237661.1| RNA methyltransferase, TrmA family [Weeksella virosa DSM 16922] gi|323436619|gb|ADX67083.1| RNA methyltransferase, TrmA family [Weeksella virosa DSM 16922] Length = 471 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 52/204 (25%), Positives = 88/204 (43%), Gaps = 26/204 (12%) Query: 174 AGRTLIYRQIEN--------SF--TQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNF 223 AG I Q+E+ SF T P ++ L A G + + +LY G G Sbjct: 280 AGEDHIVEQMEDLHFKIGPKSFYQTNPQQAYELYKLTRDFAGLTGKEL-VYDLYTGTGTI 338 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 + +++ +V+ VE ++ AA+ N + N + F M+ + L Sbjct: 339 AQFVSKKARKVVGVESVAEAIYAAKAAAELNKITNCEF-------FCGDMK-----DVLN 386 Query: 284 DIDIHSYRFKTIFV-DPPRSGLDDATVG--MVQAYPHILYISCNPDSLCRDLSILSTTHT 340 + I + + + DPPR G+ V ++ I+Y+SCN + RDL ++ + Sbjct: 387 EDFIQQHGIPDVLITDPPRDGMHKKVVENILLMNPKKIVYVSCNSATQARDLELMKEQYK 446 Query: 341 IERLALFDQFPYTRHMECGVLLVR 364 I ++ D FP T H+E VLL R Sbjct: 447 IIKVQPVDMFPQTHHVENIVLLER 470 >gi|296171903|ref|ZP_06852967.1| conserved hypothetical protein [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295893902|gb|EFG73673.1| conserved hypothetical protein [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 135 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 3/71 (4%) Query: 297 VDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYT 353 +DPPR+G + ++ A P +++I C S RD+ + + +E++ +FD FP T Sbjct: 65 LDPPRTGAGRDVIDLLAAAGVPRVVHIGCEAASFARDIGLYRGHGYAVEKIKVFDAFPLT 124 Query: 354 RHMECGVLLVR 364 H EC LL R Sbjct: 125 HHTECVALLTR 135 >gi|111221522|ref|YP_712316.1| putative RNA methyltransferase [Frankia alni ACN14a] gi|111149054|emb|CAJ60736.1| putative RNA methyltransferase [Frankia alni ACN14a] Length = 581 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 49/155 (31%), Positives = 75/155 (48%), Gaps = 16/155 (10%) Query: 214 LELYCGNGNFSLVLA---RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270 L+LY G G F+ LA RV+A+E +AA AA + ++ V + S T Sbjct: 381 LDLYAGAGLFAAFLAVDVGSGGRVVAME-----SDAAAVAAAARSLADLPQVSLRSVRVT 435 Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY-PH-ILYISCNPDSL 328 A R + + R +DPPR+G A + + A+ P + Y++C+P +L Sbjct: 436 PATVRG-----VIGSGPTAGRVDIAVLDPPRTGAGPAVMAALLAHHPRAVAYVACDPVAL 490 Query: 329 CRDLSILS-TTHTIERLALFDQFPYTRHMECGVLL 362 RDL+ S + + + L FD FP T H+EC LL Sbjct: 491 GRDLAAASESGYELVSLRAFDLFPMTAHVECVALL 525 >gi|126724609|ref|ZP_01740452.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Rhodobacterales bacterium HTCC2150] gi|126705773|gb|EBA04863.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Rhodobacterales bacterium HTCC2150] Length = 406 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 45/168 (26%), Positives = 78/168 (46%), Gaps = 18/168 (10%) Query: 202 VLAATKGIQGD---LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN 258 +LA+ K + D +++L+ G G FSL LA V AVE +EA + Sbjct: 249 LLASVKDVVADAKTVIDLFAGCGTFSLPLAEDA-MVRAVEGEGDMLEA--LDKGWRKAKG 305 Query: 259 VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA-YPH 317 +K + +++ RR + K ID + +DPPR+G + + +A Sbjct: 306 LKTIVSETRDL---YRRPLLPDEFKKID-------AVVLDPPRAGAEAQVAELAKADVAK 355 Query: 318 ILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364 I +SCNP + RD + L + +T++ + + DQF ++ H+E R Sbjct: 356 IAMVSCNPVTFARDAATLIAGGYTMQWVDVVDQFRWSSHIELAAAFTR 403 >gi|210630035|ref|ZP_03296220.1| hypothetical protein COLSTE_00104 [Collinsella stercoris DSM 13279] gi|210160712|gb|EEA91683.1| hypothetical protein COLSTE_00104 [Collinsella stercoris DSM 13279] Length = 405 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 50/167 (29%), Positives = 76/167 (45%), Gaps = 24/167 (14%) Query: 204 AATKGIQ---GD-LLELYCGNGNFSLVLARHFD------RVLAVEIAKPSVEAARYNIAA 253 +A +G+Q GD +L+ YCG+G L A R++ VE V A+ N Sbjct: 240 SAIEGMQLREGDTVLDTYCGSGTIGLAAAASARANGAHVRLIGVERNVEGVRDAQRNAQV 299 Query: 254 NHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ 313 N + ++ +++ T+ MR E D+ + +DPPR+G A V Sbjct: 300 NGLEDMS--DFIARDATEYMREAAEQGLNVDV---------LIMDPPRAGSAPAFVEAAT 348 Query: 314 AY-PH-ILYISCNPDSLCRDLSILS-TTHTIERLALFDQFPYTRHME 357 P I+YISCNP + RDL + ++RL D FP+T H E Sbjct: 349 TLRPRRIVYISCNPVTHVRDLEQFGEAGYRVDRLTPVDLFPHTTHTE 395 >gi|148272174|ref|YP_001221735.1| putative RNA methyltransferase [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147830104|emb|CAN01033.1| putative RNA methyltransferase [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 421 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 40/160 (25%), Positives = 74/160 (46%), Gaps = 13/160 (8%) Query: 214 LELYCGNGNFSLVLARHFD---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270 L+LY G G + + F R+ +VE + + E A N+A V + + Sbjct: 269 LDLYGGVGLLAAAVGDRFGDTVRITSVESDEVATEFAGDNLA-EWVGAASLTARVDRYLQ 327 Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSL 328 +R R + + T+ +DPPR+G V + + P ++Y++C+P +L Sbjct: 328 NLVREASPAERRR------LQAATVVLDPPRAGAKKPVVDALAELRPAQVVYVACDPVAL 381 Query: 329 CRDLSILST-THTIERLALFDQFPYTRHMECGVLLVRKPS 367 RD+++ + + + + FD FP+T H+E +LV S Sbjct: 382 ARDVALFAERGYELRSVRSFDLFPHTHHVESVAVLVPAAS 421 >gi|299530634|ref|ZP_07044050.1| 23S rRNA 5-methyluridine methyltransferase [Comamonas testosteroni S44] gi|298721378|gb|EFI62319.1| 23S rRNA 5-methyluridine methyltransferase [Comamonas testosteroni S44] Length = 499 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 53/226 (23%), Positives = 91/226 (40%), Gaps = 42/226 (18%) Query: 175 GRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDR 233 G T+ ++ + FTQ N IN ++ L + + +++ +CG GNF+L +A Sbjct: 279 GITMPFKPTD--FTQVNPHINRVLVTRSLRLLDAKKDERVIDWFCGLGNFTLPIATMARE 336 Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293 VL +E ++ V+ + N AAN+ + +++S F F + I Sbjct: 337 VLGIEGSETLVKRSHENYAANNATRSEDDKLASTSFVA----RNLFEMTPAMLIADGNSD 392 Query: 294 TIFVDPPRSG----------LDDATVGMVQA----------------------YPH-ILY 320 VDPPR G + +G Q +P I+Y Sbjct: 393 KWLVDPPREGAFALSKALADIHQIRIGAKQTGVASEEQPDLLPPLPEGQESWQFPKRIVY 452 Query: 321 ISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTRHMECGVLLVR 364 +SCNP +L RD +L + + + FP+T H+E + R Sbjct: 453 VSCNPATLARDAGLLVHQAGYRCVAAGVVNMFPHTAHVESMAVFER 498 >gi|310817142|ref|YP_003965106.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Ketogulonicigenium vulgare Y25] gi|308755877|gb|ADO43806.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Ketogulonicigenium vulgare Y25] Length = 399 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 45/147 (30%), Positives = 67/147 (45%), Gaps = 15/147 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++L+ G G FSL LA + V AVE P +EA + A +R + E Sbjct: 258 VVDLFAGCGTFSLPLASKTE-VHAVESVAPMIEALQRGWRA-----AGGLRKLTTEVRDL 311 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA-YPHILYISCNPDSLCRD 331 R N L ID+ F +DPPR+G + + A P I +SCNP + RD Sbjct: 312 FR-----NPLLPIDLKD--FDAAIIDPPRAGAEAQVRQLAAASVPVIAMVSCNPVTFARD 364 Query: 332 LSIL-STTHTIERLALFDQFPYTRHME 357 IL + + + DQF ++ H+E Sbjct: 365 ARILVEAGFQMGPIWVVDQFRWSTHVE 391 >gi|323452481|gb|EGB08355.1| hypothetical protein AURANDRAFT_64214 [Aureococcus anophagefferens] Length = 453 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 65/220 (29%), Positives = 102/220 (46%), Gaps = 19/220 (8%) Query: 151 LIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGI 209 L+ R + + +D D V E+ R L + + F Q N +++ V+A A + Sbjct: 247 LLLRGHAAGVAVDPDEVVEQEV---RGLRFAHKASEFWQNNDDALPALVDHVVAEARRSG 303 Query: 210 QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269 LL+ YCG G F+L A FD V VE++ +V AA N A N + V + Sbjct: 304 ATKLLDCYCGGGLFALAAAADFDAVRGVEVSAANVAAATRNAARNGLGGVATFVVG---- 359 Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDS 327 R ER F D + + +DPPR+G A + + A+ ++Y+SC+P + Sbjct: 360 ----RAERLF---ADAAEFAGGDTVVVMDPPRAGASAAFLDQLLAFAPVRVVYVSCDPAT 412 Query: 328 LCRDLSIL--STTHTIERLALFDQFPYTRHMECGVLLVRK 365 L RD + L + + FD FP TRH+E V+ R+ Sbjct: 413 LARDAAALVAGGDYAVASAVPFDLFPMTRHVEAVVVFDRR 452 >gi|329927629|ref|ZP_08281776.1| hypothetical protein HMPREF9412_2984 [Paenibacillus sp. HGF5] gi|328938327|gb|EGG34718.1| hypothetical protein HMPREF9412_2984 [Paenibacillus sp. HGF5] Length = 108 Score = 52.0 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 28/73 (38%), Positives = 43/73 (58%), Gaps = 3/73 (4%) Query: 295 IFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCRDLSILST-THTIERLALFDQFP 351 I VDPPR G D + +++ P ++Y+SCNP +L RDL +L ++ + D FP Sbjct: 35 IVVDPPRKGCDPRLLETILEMKPERVVYVSCNPSTLARDLRMLEDGGYSTVEVTPVDMFP 94 Query: 352 YTRHMECGVLLVR 364 +T H+E +LVR Sbjct: 95 HTVHVESVAVLVR 107 >gi|148259549|ref|YP_001233676.1| (Uracil-5)-methyltransferase [Acidiphilium cryptum JF-5] gi|146401230|gb|ABQ29757.1| 23S rRNA m(5)U-1939 methyltransferase [Acidiphilium cryptum JF-5] Length = 362 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 45/160 (28%), Positives = 74/160 (46%), Gaps = 31/160 (19%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSV----EAARYNIAANHVNNVK--IVR--M 264 ++ELY G G + LA H RV AVE + P++ EAAR A ++ + + R + Sbjct: 222 IVELYAGIGTLTGALAAHA-RVHAVEGSAPALAALDEAARTGGQAGRIDTERRDLARRPV 280 Query: 265 SSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA-YPHILYISC 323 ++KE A + +DPP G +V+A I+Y+SC Sbjct: 281 TAKELAGA--------------------ACVVLDPPFDGAGPQIAPLVEAKVQRIVYVSC 320 Query: 324 NPDSLCRDLSILS-TTHTIERLALFDQFPYTRHMECGVLL 362 NP++L R+ + + + + DQFP + H+E V+L Sbjct: 321 NPEALAREAAPFARAGYRLLASTPIDQFPGSDHLESVVVL 360 >gi|294787031|ref|ZP_06752285.1| putative TRAM domain protein [Parascardovia denticolens F0305] gi|315226679|ref|ZP_07868467.1| 23S rRNA methyltransferase/RumA [Parascardovia denticolens DSM 10105] gi|294485864|gb|EFG33498.1| putative TRAM domain protein [Parascardovia denticolens F0305] gi|315120811|gb|EFT83943.1| 23S rRNA methyltransferase/RumA [Parascardovia denticolens DSM 10105] Length = 457 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 44/157 (28%), Positives = 73/157 (46%), Gaps = 16/157 (10%) Query: 213 LLELYCGNGNFSLVLARHFDR--VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270 L +LY G+G F+L +A F + VL++E A +V+ A NI +N K + + Sbjct: 309 LWDLYSGSGLFTLPMATFFPQAQVLSIEGAPVAVKNAHKNIKQARLN--KTITALEGDVA 366 Query: 271 QAMRR--EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPD 326 + +R +L DI I +DPPR+G + I+Y+SC+ Sbjct: 367 ETIRSLTAHGHAQLTKPDI-------ILLDPPRAGAGRKVCQQMAESGAKAIIYVSCDVT 419 Query: 327 SLCRDLSILS-TTHTIERLALFDQFPYTRHMECGVLL 362 +L RD + L+ + I + +D +P T H+E L Sbjct: 420 NLARDTAYLTEAGYHISDIQAYDIYPMTHHVETVALF 456 >gi|302382937|ref|YP_003818760.1| (uracil-5)-methyltransferase [Brevundimonas subvibrioides ATCC 15264] gi|302193565|gb|ADL01137.1| (Uracil-5)-methyltransferase [Brevundimonas subvibrioides ATCC 15264] Length = 412 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 54/203 (26%), Positives = 89/203 (43%), Gaps = 29/203 (14%) Query: 170 RLTVAGRTLI-YRQIENSFTQ-----PNAGI-------NVHMLEWVLAATKGIQGDLLEL 216 RL++AG TL+ RQ F P G M +AA KG + + +L Sbjct: 217 RLSLAGETLVMARQPRVRFGPATVPLPAGGFLQAVPEAEDAMTSRAVAAVKGAK-VVADL 275 Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276 +CG G F+ LA RV+A + + + A + I +K + +++ RR Sbjct: 276 FCGAGTFTFPLA-TVARVIAADASAAGIAALKVGI--GSAKGMKAIEAQARDL---FRRP 329 Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILY-ISCNPDSLCRDLSIL 335 L D+ + + I DPPR+G D T + ++ +SCNP + RD +L Sbjct: 330 -----LTPFDLKAC--EAIVFDPPRAGAIDQTAQIAGTKAAVVVGVSCNPQTFARDARVL 382 Query: 336 -STTHTIERLALFDQFPYTRHME 357 + +E + DQF ++ H+E Sbjct: 383 IDSGFRLETVTPVDQFLWSSHVE 405 >gi|163737964|ref|ZP_02145380.1| (Uracil-5)-methyltransferase [Phaeobacter gallaeciensis BS107] gi|161388580|gb|EDQ12933.1| (Uracil-5)-methyltransferase [Phaeobacter gallaeciensis BS107] Length = 415 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 39/148 (26%), Positives = 71/148 (47%), Gaps = 13/148 (8%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE-FTQ 271 +++L+ G G F+L LA++ + V AVE + A + +K V +++ F Sbjct: 269 IVDLFAGCGTFTLPLAKNAE-VHAVEGESSMLRA--LDAGWRQAKGLKKVTTETRDLFRN 325 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA-YPHILYISCNPDSLCR 330 + E D++ F +DPPR+G + +V A + Y+SCNP + R Sbjct: 326 PLLAE-------DLNPFGAAFDVAVIDPPRAGAEAQVTQLVTARTKRVAYVSCNPVTFAR 378 Query: 331 DLSILS-TTHTIERLALFDQFPYTRHME 357 D IL+ + ++ + + DQF ++ H E Sbjct: 379 DAKILTDGGYRLDWVQVVDQFRWSSHCE 406 >gi|163742640|ref|ZP_02150026.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Phaeobacter gallaeciensis 2.10] gi|161384225|gb|EDQ08608.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Phaeobacter gallaeciensis 2.10] Length = 415 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 39/148 (26%), Positives = 71/148 (47%), Gaps = 13/148 (8%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE-FTQ 271 +++L+ G G F+L LA++ + V AVE + A + +K V +++ F Sbjct: 269 IVDLFAGCGTFTLPLAKNAE-VHAVEGESSMLRA--LDAGWRQAKGLKKVTTETRDLFRN 325 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA-YPHILYISCNPDSLCR 330 + E D++ F +DPPR+G + +V A + Y+SCNP + R Sbjct: 326 PLLAE-------DLNPFGAAFDVAVIDPPRAGAEAQVTQLVTARTKRVAYVSCNPVTFAR 378 Query: 331 DLSILS-TTHTIERLALFDQFPYTRHME 357 D IL+ + ++ + + DQF ++ H E Sbjct: 379 DAKILTDGGYRLDWVQVVDQFRWSSHCE 406 >gi|299134743|ref|ZP_07027935.1| (Uracil-5)-methyltransferase [Afipia sp. 1NLS2] gi|298590553|gb|EFI50756.1| (Uracil-5)-methyltransferase [Afipia sp. 1NLS2] Length = 413 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 47/174 (27%), Positives = 74/174 (42%), Gaps = 16/174 (9%) Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 SF QP + V KG + + +L+CG G F+L LA F RV A + + Sbjct: 247 SFMQPTQAGEETLAALVAERCKGAK-RIADLFCGFGPFALRLAEKF-RVSAFD--SDAAA 302 Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD 305 A N A +K + +++ RR L++ D + DPPR G + Sbjct: 303 VAALNDAIRATQGLKPLTAEARDL---FRRPLVPQELREFDAAVF-------DPPRQGAE 352 Query: 306 DATVGMVQA-YPHILYISCNPDSLCRDLSI-LSTTHTIERLALFDQFPYTRHME 357 + + H++ +SCNP + RD I L + + DQF +T H+E Sbjct: 353 AQSRQFAASRLTHVVAVSCNPATFARDAKILLGGGFKLSEVTPVDQFRHTPHVE 406 >gi|162455576|ref|YP_001617943.1| SAM-dependent methyltransferases [Sorangium cellulosum 'So ce 56'] gi|161166158|emb|CAN97463.1| SAM-dependent methyltransferases [Sorangium cellulosum 'So ce 56'] Length = 465 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 44/158 (27%), Positives = 68/158 (43%), Gaps = 8/158 (5%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +LEL+ G+G S++LAR R A+P A V++ + Q Sbjct: 304 VLELFAGSGTLSVLLARGALR--PSPGAEPGGAVASGPPGPASFTAVELSSGAVACLRQN 361 Query: 273 MRREREFNRLKDIDIHSY----RFKTIFVDPPRSGLDDATVGMVQAYPHIL-YISCNPDS 327 + + + D Y R + +DPPRSG A + + ++ Y+SC+P + Sbjct: 362 LAARGLAGKAIEADADQYPIPARTDVVVLDPPRSGAPGAARAIAASSARVVVYVSCDPAT 421 Query: 328 LCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 L RDL IL I + + FP T H+E V L R Sbjct: 422 LARDLGEILRGGFEITDIEAVELFPQTSHIESIVRLSR 459 >gi|291518465|emb|CBK73686.1| 23S rRNA m(5)U-1939 methyltransferase [Butyrivibrio fibrisolvens 16/4] Length = 428 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 57/233 (24%), Positives = 95/233 (40%), Gaps = 34/233 (14%) Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWRECAI-------RLRDALHARKYQIQLIGRANKTK 159 +D +TS ++ IY L W++ + +L LH + + + T+ Sbjct: 216 VDLVTSTQ----ISSIYEIALLAGWKQALLDCPDWEGKLTGILHTKNDRAADVVADEGTE 271 Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNA-GINV-HMLEWVLAATKGIQGDLLELY 217 I +D+ E L L + SF Q N+ G V + +T ++ +LY Sbjct: 272 ILYGQDWFKEELL----GLSFTISPFSFFQTNSLGAEVLYSTARDFISTGADGAEVYDLY 327 Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277 G G + V+A V VEI +VEAA+ N N ++N + Sbjct: 328 SGTGTIAQVIAPAAKHVTGVEIIAEAVEAAKENAKLNGLDNCDFIAG------------- 374 Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSL 328 + LK +D + + I +DPPR G+ + + Y ++YISC P SL Sbjct: 375 --DVLKVLDDITEKPDYIILDPPRDGIHPKALDKIIDYGVDSLVYISCKPTSL 425 >gi|134098393|ref|YP_001104054.1| 23S rRNA methyltransferase/RumA [Saccharopolyspora erythraea NRRL 2338] gi|291006905|ref|ZP_06564878.1| 23S rRNA methyltransferase/RumA [Saccharopolyspora erythraea NRRL 2338] gi|133911016|emb|CAM01129.1| 23S rRNA methyltransferase/RumA [Saccharopolyspora erythraea NRRL 2338] Length = 410 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 48/167 (28%), Positives = 76/167 (45%), Gaps = 24/167 (14%) Query: 204 AATKGIQGDLLELYCGNGNFSLVLARHFD---RVLAVEIAKPSVEAARYNIAANHVNNVK 260 AA +G G +LY G G F+ LA VL VE ++ +VE A N+ ++ Sbjct: 258 AAPEG--GVAWDLYGGVGLFAAGLAEQVGPTGSVLLVESSRRAVEDAVSNL-----RDLP 310 Query: 261 IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHI 318 V + +R E L D+ + +DPPR G V A+ I Sbjct: 311 QVEFRAGTAEDVVRDEG----LPSPDV-------VVLDPPRKGAGREVAEAVCAHRPSRI 359 Query: 319 LYISCNPDSLCRDLSI-LSTTHTIERLALFDQFPYTRHMECGVLLVR 364 ++++C+P +L RD+ + + + + + FD FP T H+EC LL R Sbjct: 360 VHVACDPAALARDVGLFVEGGYRLVEIEAFDAFPMTHHVECIALLER 406 >gi|296393670|ref|YP_003658554.1| deoxyribonuclease/rho motif-related TRAM [Segniliparus rotundus DSM 44985] gi|296180817|gb|ADG97723.1| deoxyribonuclease/rho motif-related TRAM [Segniliparus rotundus DSM 44985] Length = 390 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 48/194 (24%), Positives = 81/194 (41%), Gaps = 29/194 (14%) Query: 179 IYRQIENSFTQPNAGINVHMLE----WVLAATKGIQGDLLELYCGNGNFSLVLARHFD-- 232 ++R +F QP+ E WV A + DL Y G G F+ VLAR Sbjct: 214 VWRVPVQAFWQPHRDAARRYTELVAQWVGEAPGAVAWDL---YGGAGLFAAVLARAVGPT 270 Query: 233 -RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291 RV V+ A S AA ++ + +V+++ + + + Sbjct: 271 GRVFTVDSAGASSRAAAASL--KDLRHVEVLSGPTGKLLAGLPSA--------------- 313 Query: 292 FKTIFVDPPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSI-LSTTHTIERLALFDQF 350 + VDPPR+G A + + +++I C + RD+ + + + + + +FD F Sbjct: 314 -QVAVVDPPRAGAGRAVIAALARTERVIHIGCEAAAFSRDVGLYVQQGYAVREIRVFDAF 372 Query: 351 PYTRHMECGVLLVR 364 P T H+EC LL R Sbjct: 373 PLTHHVECLALLER 386 >gi|296139597|ref|YP_003646840.1| deoxyribonuclease/rho motif-related TRAM [Tsukamurella paurometabola DSM 20162] gi|296027731|gb|ADG78501.1| deoxyribonuclease/rho motif-related TRAM [Tsukamurella paurometabola DSM 20162] Length = 392 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 43/157 (27%), Positives = 68/157 (43%), Gaps = 24/157 (15%) Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274 +LY G G F+ VLAR RV VE + +V A R ++ + VR + + + Sbjct: 255 DLYGGAGVFAAVLARLGLRVDVVETSSDAVAAGRASL------DPSAVRFHRGDVARTVG 308 Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRS--GLDDATVGMVQAYPHILYISCNPDSLCRDL 332 R R + + +DPPRS G V ++++ C+P + RDL Sbjct: 309 RLRA-------------PRVVVLDPPRSGAGKAVVAVVAAAGPAAVIHVGCDPAAFARDL 355 Query: 333 SIL-STTHTIERLALFDQFPYTRHMECGVLLVRKPSG 368 ++ + + D FP T H+EC L V P+G Sbjct: 356 ALFRDAGFAVREVVALDAFPGTHHLEC--LAVLMPAG 390 >gi|261201804|ref|XP_002628116.1| tRNA(m5U54)methyltransferase [Ajellomyces dermatitidis SLH14081] gi|239590213|gb|EEQ72794.1| tRNA(m5U54)methyltransferase [Ajellomyces dermatitidis SLH14081] Length = 575 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 48/170 (28%), Positives = 78/170 (45%), Gaps = 27/170 (15%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 LL+ Y G+G F++ L+ F L ++I+ PS+ AAR N AN ++N + Sbjct: 397 LLDAYSGSGLFTVTLSPLFLSSLGIDISIPSIAAARMNARANKLHNTGFAAADAAAI--- 453 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330 KD+ + + +DPPR G D + + +Y ++Y+SCN + R Sbjct: 454 ---------FKDVPYPPDQ-TLLVIDPPRKGCDTNFLEQLLSYAPARVVYVSCNVHTQAR 503 Query: 331 DLSIL---------STTHTIERLALFDQFPYTRHMECGVLL---VRKPSG 368 D+ +L + IE + FD FP T H+E +L V +P G Sbjct: 504 DVGVLVQGGNINGREVRYEIESIKGFDFFPQTGHVEGVAILNKVVSQPQG 553 >gi|171689586|ref|XP_001909733.1| hypothetical protein [Podospora anserina S mat+] gi|170944755|emb|CAP70866.1| unnamed protein product [Podospora anserina S mat+] Length = 618 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 51/219 (23%), Positives = 92/219 (42%), Gaps = 45/219 (20%) Query: 178 LIYRQIENSFTQPNAGINVHMLEWV------LAATKGIQGDLLELYCGNGNFSLVLARHF 231 I+ SF Q N I +++ A +GI+ L++ Y G+G F++ + F Sbjct: 409 FIFTNPAGSFFQNNNSILSPFTQYIRDHILPPANKEGIK-YLIDAYSGSGLFTITQSALF 467 Query: 232 -DRVLAVEIAKPSVEAARYNIAANHVNN--VKIVRMSSKEFTQAMRREREFNRLKDIDIH 288 + ++IA+ S+ AR N N+++ K + + E K ++ + Sbjct: 468 PGGSIGIDIAEGSIAYARKNAKLNNLDEGQCKFIAADAPEL------------FKSVEGY 515 Query: 289 SYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSIL----------- 335 + + +DPPR G D + + + + ++Y+SCN + RD+ +L Sbjct: 516 NPDETVVVLDPPRKGCDASFLSQLLRFGPRRVVYVSCNVHTQARDVGVLVRGEVEGVVDD 575 Query: 336 ----------STTHTIERLALFDQFPYTRHMECGVLLVR 364 T + IE L FD FP T H+E +L R Sbjct: 576 TEETDGTERKKTRYEIESLRGFDFFPQTAHVEGVAVLNR 614 >gi|327352820|gb|EGE81677.1| tRNA(M5U54)methyltransferase [Ajellomyces dermatitidis ATCC 18188] Length = 625 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 48/170 (28%), Positives = 78/170 (45%), Gaps = 27/170 (15%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 LL+ Y G+G F++ L+ F L ++I+ PS+ AAR N AN ++N + Sbjct: 447 LLDAYSGSGLFTVTLSPLFLSSLGIDISIPSIAAARMNARANKLHNTGFAAADAAAI--- 503 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330 KD+ + + +DPPR G D + + +Y ++Y+SCN + R Sbjct: 504 ---------FKDVPYPPDQ-TLLVIDPPRKGCDTNFLEQLLSYAPARVVYVSCNVHTQAR 553 Query: 331 DLSIL---------STTHTIERLALFDQFPYTRHMECGVLL---VRKPSG 368 D+ +L + IE + FD FP T H+E +L V +P G Sbjct: 554 DVGVLVQGGNINGREVRYEIESIKGFDFFPQTGHVEGVAILNKVVSQPQG 603 >gi|115372766|ref|ZP_01460072.1| methyltransferase [Stigmatella aurantiaca DW4/3-1] gi|310823456|ref|YP_003955814.1| hypothetical protein STAUR_6230 [Stigmatella aurantiaca DW4/3-1] gi|115370247|gb|EAU69176.1| methyltransferase [Stigmatella aurantiaca DW4/3-1] gi|309396528|gb|ADO73987.1| conserved uncharacterized protein [Stigmatella aurantiaca DW4/3-1] Length = 394 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 38/118 (32%), Positives = 57/118 (48%), Gaps = 14/118 (11%) Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261 VLAA G+ L+ + G F+L LA RV AVEI++ + R N AAN + N+++ Sbjct: 215 VLAAQYA-SGEALDCFSYVGGFALQLATRAQRVTAVEISEAAAAQLRDNAAANRLTNLEV 273 Query: 262 VRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD-DATVGMVQAYPHI 318 V ++ +F L+D RF TI +DPP + DA ++ Y I Sbjct: 274 VTANAFDF------------LRDAVDEGRRFDTIVLDPPSFAKNKDAVAAALRGYKEI 319 >gi|239611924|gb|EEQ88911.1| tRNA(m5U54)methyltransferase [Ajellomyces dermatitidis ER-3] Length = 575 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 48/170 (28%), Positives = 78/170 (45%), Gaps = 27/170 (15%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 LL+ Y G+G F++ L+ F L ++I+ PS+ AAR N AN ++N + Sbjct: 397 LLDAYSGSGLFTVTLSPLFLSSLGIDISIPSIAAARMNARANKLHNTGFAAADAAAI--- 453 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330 KD+ + + +DPPR G D + + +Y ++Y+SCN + R Sbjct: 454 ---------FKDVPYPPDQ-TLLVIDPPRKGCDTNFLEQLLSYAPARVVYVSCNVHTQAR 503 Query: 331 DLSIL---------STTHTIERLALFDQFPYTRHMECGVLL---VRKPSG 368 D+ +L + IE + FD FP T H+E +L V +P G Sbjct: 504 DVGVLVQGGNINGREVRYEIESIKGFDFFPQTGHVEGVAILNKVVSQPQG 553 >gi|284990399|ref|YP_003408953.1| deoxyribonuclease/rho motif-related TRAM [Geodermatophilus obscurus DSM 43160] gi|284063644|gb|ADB74582.1| deoxyribonuclease/rho motif-related TRAM [Geodermatophilus obscurus DSM 43160] Length = 440 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 45/160 (28%), Positives = 68/160 (42%), Gaps = 26/160 (16%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSV-EAARYNIAANHVNNVKIVRMSSKEFTQ 271 +L+LY G G F LA P+V A R + + TQ Sbjct: 294 VLDLYAGAGLFGGALA-------------PAVGSAGRVVCVEADEAACAAAQANLAALTQ 340 Query: 272 AMRREREFNR------LKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISC 323 A + E + L ++D I +DPPR+G A + A P ++Y++C Sbjct: 341 AEVWQGEVDAEGLIGLLAELDAEP---DVIVLDPPRAGAGTAVSRVLAAAGPRAVVYVAC 397 Query: 324 NPDSLCRDLSILSTT-HTIERLALFDQFPYTRHMECGVLL 362 +P SL RD++ + + + L FD FP T H+EC LL Sbjct: 398 DPASLARDVAAFAAGGYRLSGLRGFDAFPMTAHVECVALL 437 >gi|308799347|ref|XP_003074454.1| tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes (ISS) [Ostreococcus tauri] gi|116000625|emb|CAL50305.1| tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes (ISS) [Ostreococcus tauri] Length = 652 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 52/218 (23%), Positives = 88/218 (40%), Gaps = 57/218 (26%) Query: 200 EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259 EW K + LL++ CG G + LA + +V+ V+I + S++ A N N V N Sbjct: 439 EWASPNGKSL---LLDVCCGTGTIGMTLAGNVKKVVGVDIVEESIKDAFVNAQLNGVTNT 495 Query: 260 ------------KIVRMSSKEFT------------QAMRREREFNRLKD----------- 284 K++R + +A + E + D Sbjct: 496 DWLAGKAEVVIPKVLREYNSRIRPVVDAPKIGTKRKATSNDPELSDGSDDEAAIQAAVTT 555 Query: 285 -IDIHSYRFKTI--FVDPPRSGLDDATVGMV---QAYPHILYISCNPDSLCRDLSILSTT 338 ID + Y F + VDPPR GL + + + + ++Y+SCN ++ +++ L Sbjct: 556 IIDENEYEFDDVVAIVDPPRGGLHRSVLTALRREKRLKRLVYVSCNSSTMAKNVIDLCAP 615 Query: 339 HT------------IERLALFDQFPYTRHMECGVLLVR 364 ++ +AL D FP+T H+E VLL R Sbjct: 616 QGYDGNGGGAPFAPVKAIAL-DLFPHTAHVEAIVLLER 652 >gi|119717125|ref|YP_924090.1| deoxyribonuclease [Nocardioides sp. JS614] gi|119537786|gb|ABL82403.1| 23S rRNA m(5)U-1939 methyltransferase [Nocardioides sp. JS614] Length = 413 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 65/237 (27%), Positives = 104/237 (43%), Gaps = 37/237 (15%) Query: 150 QLIGRANKTKICLDR------DYVDERLTVA--GRTLIYRQIENSFTQPNAGINVHMLEW 201 + I RA T LDR V ER+ V G ++ + F Q + G ++E Sbjct: 194 RAISRAGTT---LDRHATALSTVVGERVDVPRHGGEHVFAVEADGFWQVHPGAPRILVET 250 Query: 202 VLAATKGIQGDL-LELYCGNGNFSLVLARHFD---RVLAVEIAKPSVEAARYNIAANHVN 257 VL + +G+ L+LY G G F+ LA RVL+VE + + AR N+A Sbjct: 251 VLDLLQPRRGETALDLYSGVGLFARYLAEAVGPTGRVLSVEGDRTASRHARANLAGLEGV 310 Query: 258 NVK---IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQ 313 +V+ + R+ + A +D+ + +DPPR G V +V+ Sbjct: 311 DVECGAVDRVLADPLPPAY---------SSVDL-------VVLDPPREGARALVVEQVVE 354 Query: 314 AYPH-ILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVRKPSG 368 P + Y++C+P +L RD++ + + L D FP T H+E LV+ SG Sbjct: 355 RSPRAVAYVACDPAALARDVATFQKFGYHLRSLRALDMFPMTSHVEVVAQLVKSGSG 411 >gi|296425067|ref|XP_002842065.1| hypothetical protein [Tuber melanosporum Mel28] gi|295638322|emb|CAZ86256.1| unnamed protein product [Tuber melanosporum] Length = 522 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 41/157 (26%), Positives = 78/157 (49%), Gaps = 19/157 (12%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L++ YCG+G F+++ ++ V+ V+IA S+ A N AAN++ N + + +++ Sbjct: 362 LVDAYCGSGLFTILCGKNLTSVIGVDIAADSIAYASSNAAANNIENARFIAGNAETI--- 418 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330 + ID S ++ +DPPR G D + + + ++Y+SCN + R Sbjct: 419 ---------FESIDFPSTE-TSVIIDPPRKGCDKPFLDQLLEFKPKRVVYVSCNVHTQAR 468 Query: 331 DLSIL----STTHTIERLALFDQFPYTRHMECGVLLV 363 DL + + + ++ + FD FP T H+E +L Sbjct: 469 DLGYILNGKGSGYRVDEIRGFDFFPQTHHVEGVAILT 505 >gi|149181899|ref|ZP_01860387.1| RNA methyltransferase [Bacillus sp. SG-1] gi|148850338|gb|EDL64500.1| RNA methyltransferase [Bacillus sp. SG-1] Length = 398 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 72/321 (22%), Positives = 132/321 (41%), Gaps = 48/321 (14%) Query: 10 YEQQLAEKVDRLRQMMLAFQV-PNL---QIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ 65 YE QL +K D +++ + + P L I P YR + EF DG H + Sbjct: 98 YEGQLKQKTDHVKEEIASQGYDPALVLDTIGMDNPWRYRNKMEFTFAPDGSLGLHEQGNF 157 Query: 66 Q----------TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115 + E M ++ M + +NA ++ E LLR + + + T + Sbjct: 158 RKVISLETCLIASEEM-VETAMEVANWVNAHGLKGYDKDAHEGLLRHLMVRQSFATGEIM 216 Query: 116 QAI-VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVA 174 + T L++A + R+ + K + L R DR ++ +A Sbjct: 217 LGLFATEAPESNLEEAVSDLVKRVEEKFPKVKSLLWLENRD-----WADRAQSEKTHVLA 271 Query: 175 GRTLIYRQIE--------NSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSL 225 GR IY +++ ++F Q N +++ + K + + +++L+CG G FSL Sbjct: 272 GRDFIYDEMDGYRFRLWFDTFFQTNPVQAQKLVDLAVEMGKPKKTEKMIDLFCGVGTFSL 331 Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285 A + +EI + S+E+A+ N N ++N + ++ K I Sbjct: 332 PFANRVGELAGIEIVESSIESAKRNAEDNGISNTTFLAKDAR---------------KGI 376 Query: 286 D--IHSY-RFKTIFVDPPRSG 303 D + S+ R + + +DPPRSG Sbjct: 377 DQILESFGRPELLLLDPPRSG 397 >gi|257063635|ref|YP_003143307.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Slackia heliotrinireducens DSM 20476] gi|256791288|gb|ACV21958.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Slackia heliotrinireducens DSM 20476] Length = 441 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 54/196 (27%), Positives = 86/196 (43%), Gaps = 25/196 (12%) Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFS 224 Y ER VAG+ ++ SF Q N ++E L + +G ++ +LYCG G F+ Sbjct: 257 YWKER--VAGQP--FKVSAPSFFQVNTEQAETLVELALDGLEIDEGSVVADLYCGVGTFT 312 Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284 + +A+ V+AVE SV R I + ++ + RE L Sbjct: 313 IPMAKTGAEVMAVESYGSSVRDLR-RITEEEGLYIDVIGGDAA---------RELPGLGH 362 Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILS-TTHTI 341 +D + VDPPR+GLD + + A + Y+SC+P + RD+ L + Sbjct: 363 LD-------ALLVDPPRAGLDATIIPAIAAAGPRRLAYVSCDPATWARDVKRLEDQGFEL 415 Query: 342 ERLALFDQFPYTRHME 357 + D FP T H+E Sbjct: 416 VKATPVDMFPQTHHVE 431 >gi|77464781|ref|YP_354285.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Rhodobacter sphaeroides 2.4.1] gi|77389199|gb|ABA80384.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Rhodobacter sphaeroides 2.4.1] Length = 404 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 40/147 (27%), Positives = 73/147 (49%), Gaps = 15/147 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + +L+ G G FSL LA + V AVE + A + +K V + +++ Sbjct: 262 VTDLFGGAGTFSLPLAAGAE-VHAVE--GDAAMMAALDRGWRQAPGLKRVTVETRDL--- 315 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA-YPHILYISCNPDSLCRD 331 RR E + L+ + + + +DPPR+G + T + +A P + ++SCNP + RD Sbjct: 316 FRRPLEPDELR-------KTEAVVIDPPRAGAEAQTRALARAAVPVVAFVSCNPVTFARD 368 Query: 332 LSIL-STTHTIERLALFDQFPYTRHME 357 IL + ++ + + DQF ++ H+E Sbjct: 369 ALILVRGGYRLDWVQVVDQFRWSSHVE 395 >gi|330916172|ref|XP_003297319.1| hypothetical protein PTT_07680 [Pyrenophora teres f. teres 0-1] gi|311330063|gb|EFQ94576.1| hypothetical protein PTT_07680 [Pyrenophora teres f. teres 0-1] Length = 559 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 59/205 (28%), Positives = 96/205 (46%), Gaps = 32/205 (15%) Query: 185 NSFTQPNAGI----NVHMLEWVLAATKGIQ-GDLLELYCGNGNFSLVLARHFDRVLAVEI 239 SF Q N I ++ E +L +T G + L++ Y G+G F++ L+ F L ++I Sbjct: 362 GSFFQNNNSILPVFTQYIREHILPSTPGHKITHLIDAYSGSGLFTITLSSLFKSSLGIDI 421 Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299 + S+E+A N N++ SS F A R F+ ++ + + +DP Sbjct: 422 SSSSIESASTNARLNNLPE------SSTRFI-AADAARLFSSIESPAEET----VVMLDP 470 Query: 300 PRSGLDDATV-GMVQAYP-HILYISCNPDSLCRDLSIL--------------STTHTIER 343 PR G D++ + +VQ P ++Y+SCN + RD+ +L + IE Sbjct: 471 PRKGCDESFLRQLVQYGPARVVYVSCNVHTQARDIGVLVGGMKGVDGGFGKGEGCYEIES 530 Query: 344 LALFDQFPYTRHMECGVLLVRKPSG 368 L FD FP T H+E +L RK G Sbjct: 531 LRGFDFFPQTGHVEGVAVLTRKAGG 555 >gi|326918818|ref|XP_003205683.1| PREDICTED: tRNA (uracil-5-)-methyltransferase homolog [Meleagris gallopavo] Length = 662 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 33/87 (37%), Positives = 49/87 (56%), Gaps = 7/87 (8%) Query: 178 LIYRQIENSFTQPN-AGINV---HMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDR 233 L +R ++F Q N +G V + E AAT + LL++ CG G L LARH + Sbjct: 516 LTFRISPDAFFQVNTSGAEVLYQAVRELSQAATNTV---LLDVCCGTGTIGLSLARHVSK 572 Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVK 260 V+ VEI + +VE AR+N A N ++N + Sbjct: 573 VIGVEIVQKAVEDARWNAAFNGISNCE 599 >gi|323136858|ref|ZP_08071939.1| putative RNA methyltransferase [Methylocystis sp. ATCC 49242] gi|322398175|gb|EFY00696.1| putative RNA methyltransferase [Methylocystis sp. ATCC 49242] Length = 420 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 47/176 (26%), Positives = 81/176 (46%), Gaps = 18/176 (10%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 ++F Q + V+ A G + + +L+CG G F+L LA + RV A + A +V Sbjct: 240 SAFLQATQAGEAAIAARVVEAATGAR-RVADLFCGVGAFALRLAEN-ARVAAYDSAADAV 297 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR-LKDIDIHSYRFKTIFVDPPRSG 303 EA A ++ + + ++ F R L ++ S F + DPPR+G Sbjct: 298 EA--MMAGARGATGLRPLEGAVRDL---------FTRPLTGQELAS--FDVVVFDPPRAG 344 Query: 304 LDDATVGMVQAYPH-ILYISCNPDSLCRDLSI-LSTTHTIERLALFDQFPYTRHME 357 + Q+ + ++ +SC+ S RD SI LS ++ L DQF ++ H+E Sbjct: 345 AMAQAKELAQSKVNTVIAVSCSAQSFARDASILLSGGYSARNLTPIDQFRFSPHVE 400 >gi|159046032|ref|YP_001534826.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Dinoroseobacter shibae DFL 12] gi|157913792|gb|ABV95225.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Dinoroseobacter shibae DFL 12] Length = 414 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 49/176 (27%), Positives = 76/176 (43%), Gaps = 16/176 (9%) Query: 184 ENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 +F Q A +L V A G + +L+ G G F+L LA E+ + Sbjct: 241 PGAFLQATAPGEAALLAAVTEAV-GPARRIADLFAGCGTFALPLATR------AEVH--A 291 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 VE +AA K +S K T+A R+ R + RF + +DPPR+G Sbjct: 292 VEGDADMLAALDAGWRKTPGLS-KVTTEA----RDLFRRPLLPDDLARFGAVVIDPPRAG 346 Query: 304 LDDATVGMVQAYP-HILYISCNPDSLCRDLSILS-TTHTIERLALFDQFPYTRHME 357 + T + A P I +SCNP + RD L + + + + DQF ++ H+E Sbjct: 347 AEAQTAALASAQPDRIAAVSCNPVTFARDAKTLCDAGYALRWVQVVDQFRWSPHVE 402 >gi|227503489|ref|ZP_03933538.1| SAM-dependent methyltransferase [Corynebacterium accolens ATCC 49725] gi|227075992|gb|EEI13955.1| SAM-dependent methyltransferase [Corynebacterium accolens ATCC 49725] Length = 418 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 15/91 (16%) Query: 282 LKDIDIHSYRFK------------TIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDS 327 L+DIDI K + +DPPR+G + + + +A P ++++ C+P + Sbjct: 309 LRDIDIAVKSAKVEQVAAQLPQPGAVVLDPPRTGAGEQVIRAVAEAKPQAVVHVGCDPAT 368 Query: 328 LCRDLSIL-STTHTIERLALFDQFPYTRHME 357 RDLS+ S + E++AL + FP T H E Sbjct: 369 FARDLSLWHSAGYKPEKMALINAFPGTHHFE 399 >gi|218670873|ref|ZP_03520544.1| 23S rRNA (uracil-5-)-methyltransferase protein [Rhizobium etli GR56] Length = 406 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 54/175 (30%), Positives = 76/175 (43%), Gaps = 16/175 (9%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 F Q M E VLA G + +L+ G G FSL LAR RV AVE + Sbjct: 239 GGFAQATKPAEEAMAELVLAHA-GKAKRIADLFAGTGTFSLRLAR-IGRVHAVEAE--AT 294 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 A + AA +K V + ++ RR K D+ + DPPR+G Sbjct: 295 ALAALDQAARKTQGLKPVSVEKRDL---FRRPLMTQEFKPFDM-------VVFDPPRAGA 344 Query: 305 DDATVGMVQA-YPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHME 357 + + ++ I +SCNP +L RDL IL + I + DQF +T H+E Sbjct: 345 EFQCTELARSGVKKIAAVSCNPLTLARDLQILVEGGYRITGVTPIDQFLWTSHVE 399 >gi|238063510|ref|ZP_04608219.1| deoxyribonuclease/rho domain-containing protein [Micromonospora sp. ATCC 39149] gi|237885321|gb|EEP74149.1| deoxyribonuclease/rho domain-containing protein [Micromonospora sp. ATCC 39149] Length = 222 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 41/149 (27%), Positives = 68/149 (45%), Gaps = 21/149 (14%) Query: 215 ELYCGNGNFSLVLARHFD---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271 +LY G G F+ +A R+ VE A V AAR N+ ++ V + + Sbjct: 75 DLYGGAGLFAAAVASRVGPAARITLVESAAQGVAAARENL-----RDLPRVEVVAARVET 129 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLC 329 A+ R R +D+ + +DPPR+G V ++ A P + Y++C+P + Sbjct: 130 ALARRRVTG---PVDL-------VVLDPPRTGAGARVVRDVIAAGPRAVAYVACDPAAFA 179 Query: 330 RDLSILSTTH-TIERLALFDQFPYTRHME 357 RD+ + + L FD FP T+H+E Sbjct: 180 RDVRTFADAGWELAALRGFDLFPMTQHVE 208 >gi|269219402|ref|ZP_06163256.1| 23S rRNA methyltransferase/RumA [Actinomyces sp. oral taxon 848 str. F0332] gi|269211195|gb|EEZ77535.1| 23S rRNA methyltransferase/RumA [Actinomyces sp. oral taxon 848 str. F0332] Length = 409 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 52/192 (27%), Positives = 80/192 (41%), Gaps = 37/192 (19%) Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLA---RHFDRVL 235 Y+ F Q + ++E V+ GD ++ELY G G + LA V Sbjct: 237 YQVHAGGFWQVHRAAAASLIELVMRGANVQPGDRVVELYSGAGLLTQPLAVATGEAGAVY 296 Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF--- 292 A+E + +V+ AR N+ ++ R T+A R ID H+ Sbjct: 297 AMEATREAVDDARANL-----RDLPWAR------TRAAR----------IDAHALEGVNG 335 Query: 293 KTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILSTTHTIERLALF--- 347 + DPPR+GL M+ I+ +SC+P S+ RD++++ R A F Sbjct: 336 DVVVADPPRAGLGTELAAMLGEAKVGRIVLVSCDPASMARDVAVM---RGCGRKATFFEA 392 Query: 348 -DQFPYTRHMEC 358 D FP T H EC Sbjct: 393 VDIFPNTHHFEC 404 >gi|115523085|ref|YP_779996.1| RNA methyltransferase [Rhodopseudomonas palustris BisA53] gi|115517032|gb|ABJ05016.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Rhodopseudomonas palustris BisA53] Length = 411 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 41/152 (26%), Positives = 69/152 (45%), Gaps = 16/152 (10%) Query: 208 GIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267 G ++++L+CG G F+L LA RV A + ++ A + + + I Sbjct: 267 GKAKNVVDLFCGVGPFALRLATKA-RVAAYDSEASAIAALQKAAGTPGLKPMTI------ 319 Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA-YPHILYISCNPD 326 E RR +L+D+D + DPPR G + ++ P I+ +SCN Sbjct: 320 EIRDLFRRPLVPQQLEDVD-------AVVFDPPRQGAQAQCQQLAKSRVPLIVAVSCNAA 372 Query: 327 SLCRDLS-ILSTTHTIERLALFDQFPYTRHME 357 + RD +L + I++L DQF +T H+E Sbjct: 373 TFARDARLLLDGGYRIDQLTPVDQFRHTPHVE 404 >gi|14043085|gb|AAH07526.1| TRMT2B protein [Homo sapiens] Length = 494 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 46/172 (26%), Positives = 77/172 (44%), Gaps = 23/172 (13%) Query: 177 TLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRV 234 +L R ++F Q N ML + G+ D LL++ CG G L LA+H RV Sbjct: 311 SLKIRISPDAFFQINTA-GAEMLYRTVGELTGVNSDTILLDICCGTGVIGLSLAQHTSRV 369 Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294 L +E+ + +VE AR+ A N + N + +++ + + +E D S Sbjct: 370 LGIELLEQAVEDARWTAAFNGITNSEFHTGQAEKILPGLLKSKE-------DGQSI---V 419 Query: 295 IFVDPPRSGLDDATVGMVQAYPHI---LYISCNPDSLCRDLSILSTTHTIER 343 V+P R+GL + ++ + I +++SC L ST + IER Sbjct: 420 AVVNPARAGLHYKVIQAIRNFRAIHTLVFVSCK-------LHGESTRNVIER 464 >gi|306836263|ref|ZP_07469245.1| SAM-dependent methyltransferase [Corynebacterium accolens ATCC 49726] gi|304567855|gb|EFM43438.1| SAM-dependent methyltransferase [Corynebacterium accolens ATCC 49726] Length = 418 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 15/91 (16%) Query: 282 LKDIDIHSYRFK------------TIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDS 327 L+DIDI K + +DPPR+G + + + +A P ++++ C+P + Sbjct: 309 LRDIDIAVKSAKVEQVAAQLPQPGAVVLDPPRTGAGEQVIRAVAEAKPQAVVHVGCDPAT 368 Query: 328 LCRDLSIL-STTHTIERLALFDQFPYTRHME 357 RDLS+ S + E++AL + FP T H E Sbjct: 369 FARDLSLWQSAGYKPEKMALVNAFPGTHHFE 399 >gi|254500616|ref|ZP_05112767.1| tRNA (Uracil-5-)-methyltransferase superfamily [Labrenzia alexandrii DFL-11] gi|222436687|gb|EEE43366.1| tRNA (Uracil-5-)-methyltransferase superfamily [Labrenzia alexandrii DFL-11] Length = 410 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 49/183 (26%), Positives = 80/183 (43%), Gaps = 16/183 (8%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 FTQ + E V+A G + +L+ G G F+L LAR + V AVE ++ Sbjct: 242 GGFTQATLAAEQALSELVVAGV-GKAKTVADLFSGVGTFALRLARTAN-VHAVEGDSAAI 299 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 A ++ +K V ++ RR L+ F + DPPR+G Sbjct: 300 AALDRSL--RKPQGLKKVTFEKRDL---FRRPLVPEELEP-------FAAVVFDPPRAGA 347 Query: 305 DDATVGMVQA-YPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLL 362 + ++ I+ +SCNP +L RDL IL + + + DQF ++ H+E +L Sbjct: 348 QAQAEMLAKSKVKTIVAVSCNPATLARDLRILIDGGYALHTVTPVDQFHFSPHIEAVAVL 407 Query: 363 VRK 365 R+ Sbjct: 408 KRE 410 >gi|209548166|ref|YP_002280083.1| (uracil-5)-methyltransferase [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209533922|gb|ACI53857.1| (Uracil-5)-methyltransferase [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 416 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 53/175 (30%), Positives = 80/175 (45%), Gaps = 16/175 (9%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 FTQ M E VLA G + +L+ G G FSL LAR RV AVE ++ Sbjct: 249 GGFTQATKPAEEAMAELVLAHA-GKAKRIADLFAGAGTFSLRLAR-IGRVHAVEAEAKAL 306 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 A + AA + +K V + ++ + +EF + + DPPR+G Sbjct: 307 AALDH--AARNAPGLKPVTIERRDLFRRPLMTQEFKP----------YDAVIFDPPRAGA 354 Query: 305 DDATVGMVQA-YPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHME 357 + + ++ I +SCNP +L RDL+IL + I + DQF +T H+E Sbjct: 355 EFQCKELARSSVKKIAAVSCNPLTLARDLAILVEGGYRITGVTPIDQFLWTSHVE 409 >gi|326402755|ref|YP_004282836.1| putative RNA methyltransferase [Acidiphilium multivorum AIU301] gi|325049616|dbj|BAJ79954.1| putative RNA methyltransferase [Acidiphilium multivorum AIU301] Length = 362 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 44/160 (27%), Positives = 73/160 (45%), Gaps = 31/160 (19%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSV----EAARYNIAANHVNNVK--IVR--M 264 ++E Y G G + LA H RV AVE + P++ EAAR A ++ + + R + Sbjct: 222 IVEFYAGIGTLTGALAAHA-RVHAVEGSAPALAALDEAARTGGQAGRIDTERRDLARRPV 280 Query: 265 SSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA-YPHILYISC 323 ++KE A + +DPP G +V+A I+Y+SC Sbjct: 281 TAKELAGA--------------------ACVVLDPPFDGAGPQIAPLVEAKVQRIVYVSC 320 Query: 324 NPDSLCRDLSILS-TTHTIERLALFDQFPYTRHMECGVLL 362 NP++L R+ + + + + DQFP + H+E V+L Sbjct: 321 NPEALAREAAPFARAGYRLLASTPIDQFPGSDHLESVVVL 360 >gi|114327982|ref|YP_745139.1| tRNA (Uracil-5-) -methyltransferase [Granulibacter bethesdensis CGDNIH1] gi|114316156|gb|ABI62216.1| tRNA (Uracil-5-) -methyltransferase [Granulibacter bethesdensis CGDNIH1] Length = 413 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 45/206 (21%), Positives = 88/206 (42%), Gaps = 30/206 (14%) Query: 154 RANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL 213 R +C RD V +T +G ++ +F Q + ++ + A + + Sbjct: 229 RGRPEVLCQLRDPV---ITFSGHSITAP--PGAFLQASRAAEDAIMAAIEAGLPKKRRKI 283 Query: 214 LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273 +EL+ G G F+L L KP + A V +++ ++ Sbjct: 284 VELFAGIGTFTLRL-------------KPGMAYEGDEAAVAAVKRAGFGQITRRDL---F 327 Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA-YPHILYISCNPDSLCRDL 332 R+ + L+ +D+ + +DPP +G + QA P I+Y+SCNP +L RD Sbjct: 328 RQPLQAAELRGVDV-------VILDPPHAGAAAQCATLAQAKVPRIIYVSCNPHALRRDA 380 Query: 333 SILS-TTHTIERLALFDQFPYTRHME 357 ++L+ + + ++ DQF ++ +E Sbjct: 381 TLLAGAGYRLVSASVIDQFLWSTQIE 406 >gi|294675748|ref|YP_003576363.1| tRNA (Uracil-5-)-methyltransferase family protein [Rhodobacter capsulatus SB 1003] gi|294474568|gb|ADE83956.1| tRNA (Uracil-5-)-methyltransferase family protein [Rhodobacter capsulatus SB 1003] Length = 407 Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 49/179 (27%), Positives = 82/179 (45%), Gaps = 24/179 (13%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 +F Q A ++++V AT+G + +L+ G G F+L LA + V AVE + Sbjct: 239 GAFLQATAAGEAALVDFVRKATEG-AARIADLFAGCGTFALPLAATAE-VHAVESEAAML 296 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR--LKD-IDIHSYRFKTIFVDPPR 301 A + +K + +++ F R L D ID RF + +DPPR Sbjct: 297 AALDWGW--RQAQGLKRLTHEARDL---------FRRPLLPDEID----RFDAVVIDPPR 341 Query: 302 SGLDDATVGMVQAYP--HILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHME 357 +G +A V + A + Y+SCNP + RD ++ + + + DQF Y+ H+E Sbjct: 342 AGA-EAQVAEIAASSLRDLTYVSCNPVTFARDAERLVQAGFALADVIVVDQFRYSAHIE 399 >gi|269956702|ref|YP_003326491.1| deoxyribonuclease/rho motif-related TRAM [Xylanimonas cellulosilytica DSM 15894] gi|269305383|gb|ACZ30933.1| deoxyribonuclease/rho motif-related TRAM [Xylanimonas cellulosilytica DSM 15894] Length = 447 Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 25/73 (34%), Positives = 44/73 (60%), Gaps = 3/73 (4%) Query: 295 IFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCRDLSILST-THTIERLALFDQFP 351 + +DPPR+G + V +VQ P ++Y++C+P +L RD++ + + + L FD FP Sbjct: 375 VVLDPPRAGAGRSVVEAIVQRGPARVVYVACDPAALARDVAYFAGHGYELADLRAFDLFP 434 Query: 352 YTRHMECGVLLVR 364 +T H+E +L R Sbjct: 435 HTHHVEAVAVLTR 447 >gi|308506397|ref|XP_003115381.1| hypothetical protein CRE_18824 [Caenorhabditis remanei] gi|308255916|gb|EFO99868.1| hypothetical protein CRE_18824 [Caenorhabditis remanei] Length = 636 Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 39/163 (23%), Positives = 76/163 (46%), Gaps = 23/163 (14%) Query: 213 LLELYCGNGNFSLVLARHFDR-----VLAVEIAKPSVEAARYNIAANHVNNV-KIVRMSS 266 LL++ CG G L ++ + +E+ +VE A+ N N + K + + Sbjct: 472 LLDICCGTGTIGQCLLKNIQSSQKVFCIGIEMIVEAVEDAKQNAKQNKMEKCCKYIAGKA 531 Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV---GMVQAYPHILYISC 323 ++ ++M+ ++ K+ D+ R + +DPPR+G+ + + ++ ++++SC Sbjct: 532 EDTFRSMK----YHLPKEFDLRKSRVVGV-LDPPRAGMHEKVILACREMETMRRLIFVSC 586 Query: 324 NPDS-------LCRDLS--ILSTTHTIERLALFDQFPYTRHME 357 +P+S LCR S +I R+ D FP T HME Sbjct: 587 DPNSAINNIVNLCRPESRKYNGAAFSITRVQPVDMFPQTNHME 629 >gi|89067447|ref|ZP_01154960.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Oceanicola granulosus HTCC2516] gi|89047016|gb|EAR53070.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Oceanicola granulosus HTCC2516] Length = 386 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 47/182 (25%), Positives = 75/182 (41%), Gaps = 15/182 (8%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 +F Q A +L+ V AA G +++L+ G G FSL LA + V AVE P + Sbjct: 217 GAFLQATADGEAALLDVVRAAV-GDAERVVDLFAGCGTFSLPLAERAE-VHAVETYAPML 274 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 A R + + R+ R I RF +DPPR+G Sbjct: 275 AALDRGW-----------RETGGGLKRVTTEARDLFRNPLIADDLARFDAAVIDPPRAGA 323 Query: 305 DDATVGMVQA-YPHILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHMECGVLL 362 + ++ I ISCNP + RD +++ + + + DQF ++ H+E + Sbjct: 324 QAQVAELARSRLTRIAMISCNPVTFARDAQTLVEAGFRLGPITVVDQFRWSTHVELACAV 383 Query: 363 VR 364 R Sbjct: 384 TR 385 >gi|56694957|ref|YP_165302.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Ruegeria pomeroyi DSS-3] gi|56676694|gb|AAV93360.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Ruegeria pomeroyi DSS-3] Length = 417 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 38/147 (25%), Positives = 70/147 (47%), Gaps = 15/147 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + +L+ G G F+L LA + V AVE S A + +K V +++ Sbjct: 272 VADLFAGCGTFALPLAETAE-VHAVE--GESAMTAALDRGWRRAQGLKRVTTEARDL--- 325 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHIL-YISCNPDSLCRD 331 RR + L F + +DPPR+G + + +A P ++ Y+SCNP + RD Sbjct: 326 FRRPLLPDELAA-------FDAVVLDPPRAGAEAQVAELARAKPPVIAYVSCNPVTFARD 378 Query: 332 L-SILSTTHTIERLALFDQFPYTRHME 357 +++ +++ + + DQF ++ H+E Sbjct: 379 AKTLVQAGYSLNWVQVVDQFRWSAHVE 405 >gi|172040588|ref|YP_001800302.1| putative SAM-dependent methyltransferase [Corynebacterium urealyticum DSM 7109] gi|171851892|emb|CAQ04868.1| putative SAM-dependent methyltransferase [Corynebacterium urealyticum DSM 7109] Length = 416 Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 39/180 (21%), Positives = 75/180 (41%), Gaps = 17/180 (9%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 ++F Q + + + WV G + +LY G G S L + V++A + Sbjct: 237 DAFWQSHISASAYYARWVADRLNGDLHTVWDLYGGCGALSAGLLGSARNIEIVDVASSAT 296 Query: 245 EAARYNIAANHVNNVK----IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300 A R AA+ + + VR S + + + + + D+D + +DPP Sbjct: 297 HAGRDAFAADRESRAEGAGTAVRFRSSDVGAWLEK---LDEVADLD-------AVVLDPP 346 Query: 301 RSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHME 357 R+G + V + P +++I C+P + RD + + + + + D F T H+E Sbjct: 347 RTGAGADVIQNVAQHRPPRVIHIGCDPATAARDAGMWRDAGYELREMEIVDAFGLTHHVE 406 >gi|281353795|gb|EFB29379.1| hypothetical protein PANDA_009403 [Ailuropoda melanoleuca] Length = 631 Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 50/188 (26%), Positives = 78/188 (41%), Gaps = 43/188 (22%) Query: 213 LLELYCGNGNFSLVLA---------RH---------FDRVLAVEIAKPSVEAARYNIAAN 254 +L++ CG G L LA RH RV+ +E+ + +VE AR N N Sbjct: 429 VLDVCCGTGTIGLALAPVSLWDGVGRHESVLSWLQRVKRVVGIELCQEAVEDARVNARDN 488 Query: 255 HVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA 314 + NV+ +++ + +RL + +DPPR+GL + V+ Sbjct: 489 ELTNVEFHCGRAEDLVPTL-----VSRLASQQL------VAILDPPRAGLHSKVILAVRR 537 Query: 315 YPHI---LYISCNPDS-------LCRDLS--ILSTTHTIERLALFDQFPYTRHMECGVLL 362 ++ LY+SCNP + LCR S + T + D FP T H E +L Sbjct: 538 AENLRRLLYVSCNPRAAMGNFVDLCRAPSNRVKGTPFRPVKAVAVDLFPQTPHCEMLLLF 597 Query: 363 --VRKPSG 368 V P+G Sbjct: 598 ERVEHPNG 605 >gi|220922787|ref|YP_002498089.1| (uracil-5)-methyltransferase [Methylobacterium nodulans ORS 2060] gi|219947394|gb|ACL57786.1| (uracil-5)-methyltransferase [Methylobacterium nodulans ORS 2060] Length = 421 Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 53/224 (23%), Positives = 92/224 (41%), Gaps = 37/224 (16%) Query: 153 GRANKTKICLDRDYVDERLTVAGRTLIYRQIE-------------NSFTQPNAGINVHML 199 GRA + + L RL++ G L+ R+ F Q + Sbjct: 203 GRARQVLVALAETCDLARLSLHGEVLVERRPPVIRAGRAALVPPPGGFLQATQAGEALLG 262 Query: 200 EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259 E V+ A G + + +L+ G G FSL LA E A +VE ++AA Sbjct: 263 ELVVTAMGGAK-RIADLFSGAGAFSLRLAE--------ERAVHAVEGDAASLAALD---- 309 Query: 260 KIVRMSSKEFTQAMR----REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA- 314 + FT +R R+ R + RF + DPPR+G + + ++ Sbjct: 310 -----RAARFTPGLRSVTTERRDLFRRPLLAPELDRFDAVVFDPPRAGAEAQAARLAESK 364 Query: 315 YPHILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHME 357 P ++ +SC+ S RD + +L+ + ++ + DQF ++ H+E Sbjct: 365 VPVVVGVSCDAGSFARDAALLLAGGYRLDEVVPIDQFRHSPHVE 408 >gi|114776547|ref|ZP_01451592.1| 23S rRNA (uracil-5-)-methyltransferase [Mariprofundus ferrooxydans PV-1] gi|114553377|gb|EAU55775.1| 23S rRNA (uracil-5-)-methyltransferase [Mariprofundus ferrooxydans PV-1] Length = 415 Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 42/149 (28%), Positives = 63/149 (42%), Gaps = 20/149 (13%) Query: 213 LLELYCGNGNFSLVLARHFD-RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271 + +L+CG GN SL LA + E+ SV AA+ N +N F Q Sbjct: 275 IADLFCGIGNLSLPLAVATGAELFGAELNPASVRAAQTNAKRLGIN---------ASFVQ 325 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFV-DPPRSGLDDATVGMVQAYP-HILYISCNPDSLC 329 A N +D ++ Y + + DPPR G + P I+ ISC+P + Sbjct: 326 A-------NLFEDFNMEPYIGADLLILDPPRRGAKRICSRITHLMPKQIIMISCDPAAGA 378 Query: 330 RDLSIL-STTHTIERLALFDQFPYTRHME 357 RD +L + ++ L D F Y H+E Sbjct: 379 RDGVMLQQQGYQLKALQALDLFAYAGHVE 407 >gi|170740613|ref|YP_001769268.1| (Uracil-5)-methyltransferase [Methylobacterium sp. 4-46] gi|168194887|gb|ACA16834.1| (Uracil-5)-methyltransferase [Methylobacterium sp. 4-46] Length = 420 Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 53/219 (24%), Positives = 89/219 (40%), Gaps = 27/219 (12%) Query: 153 GRANKTKICLDRDYVDERLTVAGRTLIYRQIE------NSFTQPNAGI------NVHMLE 200 GRA + + L D RL++ G L+ R+ + P G +L Sbjct: 202 GRARQALVALAGDLDLARLSLHGEVLVERRPPLLRVGRAALVPPPGGFLQATRAGEALLG 261 Query: 201 WVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK 260 ++ A G + +L+CG+G FSL LA V AVE A V Sbjct: 262 DLVVAGVGDAKRVADLFCGSGAFSLRLAEARG-VHAVEGDA-----AALAALDRAVRGAP 315 Query: 261 IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA-YPHIL 319 +R + E RR L RF + DPPR+G + + + P ++ Sbjct: 316 GLRAVTTERRDLFRRPLLAPELD-------RFDAVVFDPPRAGAEAQAARLAGSKVPVVV 368 Query: 320 YISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHME 357 +SC+ + RD ++L + + ++ + DQF ++ H+E Sbjct: 369 GVSCDAGTFARDAALLIAGGYRLDEVVPLDQFRHSPHVE 407 >gi|189189148|ref|XP_001930913.1| tRNA (uracil-5-)-methyltransferase [Pyrenophora tritici-repentis Pt-1C-BFP] gi|187972519|gb|EDU40018.1| tRNA (uracil-5-)-methyltransferase [Pyrenophora tritici-repentis Pt-1C-BFP] Length = 559 Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 59/208 (28%), Positives = 96/208 (46%), Gaps = 32/208 (15%) Query: 185 NSFTQPNAGI----NVHMLEWVLAATKGIQ-GDLLELYCGNGNFSLVLARHFDRVLAVEI 239 SF Q N I ++ E +L +T G + L++ Y G+G F++ L+ F L ++I Sbjct: 362 GSFFQNNNSILPVFTQYIREHILPSTPGHKITHLIDAYSGSGLFTITLSSLFKSSLGIDI 421 Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299 + S+E+A N N++ SS F A R F ++ + + +DP Sbjct: 422 SSSSIESASTNAKLNNLPE------SSTRFI-AADAARLFASIESPAEET----VVMLDP 470 Query: 300 PRSGLDDATV-GMVQAYP-HILYISCNPDSLCRDLSIL--------------STTHTIER 343 PR G D++ + +VQ P ++Y+SCN + RD+ +L + IE Sbjct: 471 PRKGCDESFLRQLVQYGPARVVYVSCNVHTQARDIGVLVGGMKGVDGGFGKGEGCYEIES 530 Query: 344 LALFDQFPYTRHMECGVLLVRKPSGWHQ 371 L FD FP T H+E +L RK G + Sbjct: 531 LRGFDFFPQTGHVEGVAVLSRKAGGQKK 558 >gi|240141134|ref|YP_002965614.1| 23S rRNA (Uracil-5-)-methyltransferase [Methylobacterium extorquens AM1] gi|240011111|gb|ACS42337.1| 23S rRNA (Uracil-5-)-methyltransferase [Methylobacterium extorquens AM1] Length = 427 Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 51/220 (23%), Positives = 94/220 (42%), Gaps = 19/220 (8%) Query: 145 RKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIEN--SFTQPNAGINVHMLEWV 202 R +L G + ++ + D V ER A R++ + SF Q + V Sbjct: 200 RGVLTRLAGELDLARLSIHGDVVVERRPPAVGEGPARRVPSPGSFLQATQAGEATLTALV 259 Query: 203 LAA---TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259 L A K + +L+CG+G F+L LA V A + ++ A + + Sbjct: 260 LEAMDEGKAKVRRVGDLFCGSGPFALTLAAGAREVHAADGEAAAITA----LTRAYRAGA 315 Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA-YPHI 318 R+++ E RR L +D + DPPR+G + + ++ P + Sbjct: 316 GYARITA-EARDLFRRPLLGPELDALD-------AVVFDPPRAGAEAQVRRIAESKVPLV 367 Query: 319 LYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHME 357 + ++C+P + RD + L + + +ER+ DQF ++ H+E Sbjct: 368 VAVACDPGTFARDAATLIAGGYRLERVTPVDQFAWSAHVE 407 >gi|260948450|ref|XP_002618522.1| hypothetical protein CLUG_01981 [Clavispora lusitaniae ATCC 42720] gi|238848394|gb|EEQ37858.1| hypothetical protein CLUG_01981 [Clavispora lusitaniae ATCC 42720] Length = 473 Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 13/92 (14%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L++ YCG+G FS+ + +V+ VE++ SV+ A N N + N + ++E Sbjct: 395 LVDAYCGSGLFSITCSTGVSKVIGVEVSADSVKFAERNAKTNKIENASFIVGKAEEI--- 451 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 K+ID + R ++ +DPPR G+ Sbjct: 452 ---------FKNIDTPAAR-TSVILDPPRKGM 473 >gi|146339198|ref|YP_001204246.1| putative RNA methyltransferase [Bradyrhizobium sp. ORS278] gi|146192004|emb|CAL76009.1| putative RNA methyltransferase [Bradyrhizobium sp. ORS278] Length = 411 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 51/182 (28%), Positives = 83/182 (45%), Gaps = 17/182 (9%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 SF Q A + + VL G + +L+CG G F+L LA RV+A++ S+ Sbjct: 245 GSFLQATAQGEETLAQLVLDRV-GKAKQVADLFCGVGPFALRLASR-GRVIAMDTDAGSI 302 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 A + A ++K ++ +++ RR L+DID + DPPR G Sbjct: 303 AALQK---AAGTPSLKPIKAEARDL---FRRPLMPPELRDID-------AVVFDPPRQGA 349 Query: 305 DDATVGMVQA-YPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLL 362 + + P I+ +SCN + RD+ +L + +E + DQF +T H+E L Sbjct: 350 QAQAKQLAASKVPVIVAVSCNVTTFARDVRMLIDGGYKLETVVPVDQFRHTPHVELVARL 409 Query: 363 VR 364 VR Sbjct: 410 VR 411 >gi|312879698|ref|ZP_07739498.1| (uracil-5)-methyltransferase [Aminomonas paucivorans DSM 12260] gi|310782989|gb|EFQ23387.1| (uracil-5)-methyltransferase [Aminomonas paucivorans DSM 12260] Length = 360 Score = 49.7 bits (117), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 41/157 (26%), Positives = 64/157 (40%), Gaps = 28/157 (17%) Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN------IAANHVNNVKIVRMSSKE 268 +LYCG+G L VEI+ +++ A N + +R Sbjct: 220 DLYCGDGASLARWRARGSEALGVEISGSALDRAARNAPGCILLQGTCGQRAPQIRGWLAS 279 Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPD 326 F Q MRR +++PPR+GL+ M+ P + Y+SC Sbjct: 280 FPQGMRR-------------------AYLNPPRTGLETEVAAMLTDCPAGRLAYLSCAAR 320 Query: 327 SLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLL 362 +L RDL +L + + + L +D FP T H+E LL Sbjct: 321 TLRRDLELLEAGGYEVVSLTPYDFFPRTDHVETLALL 357 >gi|92116386|ref|YP_576115.1| RNA methyltransferase [Nitrobacter hamburgensis X14] gi|91799280|gb|ABE61655.1| 23S rRNA m(5)U-1939 methyltransferase [Nitrobacter hamburgensis X14] Length = 414 Score = 49.7 bits (117), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 41/147 (27%), Positives = 70/147 (47%), Gaps = 15/147 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + +L+CG G F+L LA RV A + ++ A + A H +K V+ +++ Sbjct: 272 IADLFCGVGPFALRLAAGA-RVTAFDSDAGAIGALQKAAATTH--GLKPVKAEARDL--- 325 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA-YPHILYISCNPDSLCRD 331 RR L+DID+ + DPPR G + + + P I+ +SC+ + RD Sbjct: 326 FRRPLLTQELRDIDVAVF-------DPPRQGAQAQSKQLAASKIPVIVAVSCSIATFARD 378 Query: 332 LSIL-STTHTIERLALFDQFPYTRHME 357 IL + +E + DQF ++ H+E Sbjct: 379 ARILIDGGYRLETVTPVDQFRHSPHVE 405 >gi|103486680|ref|YP_616241.1| (Uracil-5)-methyltransferase [Sphingopyxis alaskensis RB2256] gi|98976757|gb|ABF52908.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Sphingopyxis alaskensis RB2256] Length = 399 Score = 49.7 bits (117), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 45/183 (24%), Positives = 75/183 (40%), Gaps = 22/183 (12%) Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 +F QP A +++ V A G + +L+ G G F+L SV+ Sbjct: 235 AFLQPTAAGQAALVDAVARAI-GDASTVADLFAGVGTFAL-----------------SVQ 276 Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQA--MRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 A R AA + + +A R+ R + RF I +DPPR+G Sbjct: 277 AGRKVYAAEGARDAIAALAGAANRARALVTTEHRDLFRRPLVPTELNRFGAIILDPPRAG 336 Query: 304 LDDATVGMVQAYPHIL-YISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVL 361 ++ + + ++ Y+SCNP S RD IL +T++ + QF ++ H+E Sbjct: 337 AEEQVKQLAASAAAVIAYVSCNPASFARDAKILVEGGYTLDWVQPVGQFRWSTHVELAAR 396 Query: 362 LVR 364 R Sbjct: 397 FAR 399 >gi|300741361|ref|ZP_07071382.1| putative tRNA (Uracil-5-)-methyltransferase [Rothia dentocariosa M567] gi|300380546|gb|EFJ77108.1| putative tRNA (Uracil-5-)-methyltransferase [Rothia dentocariosa M567] Length = 544 Score = 49.7 bits (117), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 50/216 (23%), Positives = 91/216 (42%), Gaps = 22/216 (10%) Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSL 225 V E ++ R Y+ F Q + ++ +L + G+ L+LY G G F+ Sbjct: 324 VTEEVSFGPRRFSYQVSAGGFWQIHRCAPSTLMGTMLTMLRPTLGECALDLYAGAGLFTA 383 Query: 226 VLARHFDR---VLAVEIAKPSVEAARYNIAANHVNN--------VKIVRMSSKEFTQAMR 274 LA V++VE + + AR N A + + V+++R + Q ++ Sbjct: 384 ALADAVGSEGTVISVEGSPVTHRDARSNFAPDGPSRSDNSKETRVEVIRGDVAQSLQDLK 443 Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDL 332 ++ D + +DP R G + + + ILY++C+P +L RD Sbjct: 444 AAHSLGQIPTPD-------AVVLDPSREGANRKVLERLNELKPGRILYVACDPAALGRDT 496 Query: 333 SILSTTH-TIERLALFDQFPYTRHMECGVLLVRKPS 367 +IL + ++ FD +P T H+E L R P+ Sbjct: 497 AILRELGWDLVQVRAFDMYPNTHHVETLALFHRAPA 532 >gi|193699922|ref|XP_001950974.1| PREDICTED: tRNA (uracil-5-)-methyltransferase homolog A-like [Acyrthosiphon pisum] Length = 645 Score = 49.7 bits (117), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 26/115 (22%), Positives = 61/115 (53%), Gaps = 14/115 (12%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +L+L+CG+G +L LA+ +V+ +E+ K ++ A+ N N + N + + +++ + Sbjct: 387 VLDLFCGSGCLALTLAKKCKQVVGIELIKANIMDAKRNAEINGIVNCEFIAGRTEDILDS 446 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP---HILYISCN 324 + N+LK ++ T+ +DPP +G+ V ++ + +++Y+ N Sbjct: 447 V-----LNKLKGCNV------TVIMDPPLTGVSTGLVRTLRKFKEAINLIYVCSN 490 >gi|262196726|ref|YP_003267935.1| (uracil-5)-methyltransferase [Haliangium ochraceum DSM 14365] gi|262080073|gb|ACY16042.1| (Uracil-5)-methyltransferase [Haliangium ochraceum DSM 14365] Length = 489 Score = 49.7 bits (117), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 52/165 (31%), Positives = 75/165 (45%), Gaps = 18/165 (10%) Query: 207 KGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRM 264 G GD L+LYCG G + LA V+ VE + PS AA + AA I Sbjct: 338 PGADGDRAALDLYCGVGGVAFALAGDGGHVVGVE-SNPSAVAAARDAAAGVGAGANI--- 393 Query: 265 SSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL--DDATVGMVQAYPHILYIS 322 +F A+ +F RL + + V+PPR+GL + + A P ++Y+S Sbjct: 394 ---DF--ALGDAADFGRLS----RDLQPSLVAVNPPRAGLRPEARDALLAAAPPALVYVS 444 Query: 323 CNPDSLCRDLSILSTT-HTIERLALFDQFPYTRHMECGVLLVRKP 366 C P SL RD++ + + IER+ D P T +E L R P Sbjct: 445 CGPSSLARDVAAFTAAGYEIERVLPVDLMPGTPQIETVATLRRCP 489 >gi|311113443|ref|YP_003984665.1| methyltransferase [Rothia dentocariosa ATCC 17931] gi|310944937|gb|ADP41231.1| methyltransferase [Rothia dentocariosa ATCC 17931] Length = 544 Score = 49.7 bits (117), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 50/216 (23%), Positives = 91/216 (42%), Gaps = 22/216 (10%) Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSL 225 V E ++ R Y+ F Q + ++ +L + G+ L+LY G G F+ Sbjct: 324 VTEEVSFGPRRFSYQVSAGGFWQIHRCAPSTLMGTMLTMLRPTLGECALDLYAGAGLFTA 383 Query: 226 VLARHFDR---VLAVEIAKPSVEAARYNIAANHVNN--------VKIVRMSSKEFTQAMR 274 LA V++VE + + AR N A + + V+++R + Q ++ Sbjct: 384 ALADAVGSEGTVISVEGSPVTHRDARSNFAPDGPSRSDNSKETRVEVIRGDVAQSLQDLK 443 Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDL 332 ++ D + +DP R G + + + ILY++C+P +L RD Sbjct: 444 AAHSLGQIPTPD-------AVVLDPSREGANRKVLERLNELKPGRILYVACDPAALGRDT 496 Query: 333 SILSTTH-TIERLALFDQFPYTRHMECGVLLVRKPS 367 +IL + ++ FD +P T H+E L R P+ Sbjct: 497 AILRELGWDLVQVRAFDMYPNTHHVETLALFHRAPA 532 >gi|163853709|ref|YP_001641752.1| (Uracil-5)-methyltransferase [Methylobacterium extorquens PA1] gi|163665314|gb|ABY32681.1| (Uracil-5)-methyltransferase [Methylobacterium extorquens PA1] Length = 431 Score = 49.7 bits (117), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 51/220 (23%), Positives = 94/220 (42%), Gaps = 19/220 (8%) Query: 145 RKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIEN--SFTQPNAGINVHMLEWV 202 R +L G + ++ + D V ER A R++ + SF Q + V Sbjct: 204 RGVLTRLAGELDLARLSIHGDVVVERRPPAVGEGPARRVPSPGSFLQATQAGEATLTALV 263 Query: 203 LAA---TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259 L A K + +L+CG+G F+L LA V A + ++ A + + Sbjct: 264 LEAMDEGKAKVRRVGDLFCGSGPFALTLAAGAREVHAADGEAAAITA----LTRAYRAGA 319 Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA-YPHI 318 R+++ E RR L +D + DPPR+G + + ++ P + Sbjct: 320 GYARITA-EARDLFRRPLLGPELDALD-------AVVFDPPRAGAEAQVRRIAESKVPLV 371 Query: 319 LYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHME 357 + ++C+P + RD + L + + +ER+ DQF ++ H+E Sbjct: 372 VGVACDPGTFARDAATLIAGGYRLERVTPVDQFAWSAHVE 411 >gi|152977898|ref|YP_001343527.1| 23S rRNA methyluridine methyltransferase [Actinobacillus succinogenes 130Z] gi|150839621|gb|ABR73592.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Actinobacillus succinogenes 130Z] Length = 383 Score = 49.7 bits (117), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 42/161 (26%), Positives = 68/161 (42%), Gaps = 24/161 (14%) Query: 213 LLELYCGNGNFSLVLARHFDR------VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266 L +L+CG G F L A + +EI+ ++ +A + + NV + + Sbjct: 239 LWDLFCGVGGFGLHCAAALQANTPDVALTGIEISPSAIYSAALSAEKCGLKNVSFQSLDA 298 Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY-PH-ILYISCN 324 F N+ D+ + V+PPR G+ + P +LY SCN Sbjct: 299 ANFA--------LNQDDKPDL-------VIVNPPRRGIGKPLAEFLNNLRPQFLLYSSCN 343 Query: 325 PDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 ++ DL L T + + ++ LFD FP+T H E LL K Sbjct: 344 AVTMGSDLQSL-THYQMRKIRLFDMFPHTAHYEVLTLLTLK 383 >gi|297182836|gb|ADI18988.1| SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [uncultured delta proteobacterium HF0010_10I05] Length = 415 Score = 49.7 bits (117), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 39/156 (25%), Positives = 76/156 (48%), Gaps = 20/156 (12%) Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271 ++L+LY G G SL H +++ + I + + +A + A + + +++ + Q Sbjct: 277 EVLDLYGGVGTLSL---PHAEQIQSCVIVEENPDATHF--AQRNTKEIPHFQITPSKVQQ 331 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL-DDATVGMVQAYPH-ILYISCNPDSLC 329 A LK I +T+ ++PPR+G+ + +++ P ++Y+SCN + Sbjct: 332 A---------LKQIGGQ----QTVLLNPPRAGIANQVRKQLLKVKPKRLIYLSCNVSTCA 378 Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 RDL L + ++ F+ FP T H+E +L RK Sbjct: 379 RDLKGLQDYYELKWQQAFNFFPATPHIELLTILERK 414 >gi|294085814|ref|YP_003552574.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Candidatus Puniceispirillum marinum IMCC1322] gi|292665389|gb|ADE40490.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Candidatus Puniceispirillum marinum IMCC1322] Length = 448 Score = 49.3 bits (116), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 36/147 (24%), Positives = 66/147 (44%), Gaps = 14/147 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++L+ G G S+ L +LAVE S+ A + N K + Sbjct: 306 VIDLFAGCGTLSVPLVSQLTHLLAVEQDAASLAALKAG-----ANKAKC-----GARVKT 355 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRD 331 M+R+ ++ +D+ F +DPPR+G + + P I +SCNP + RD Sbjct: 356 MQRDLMNAPIQPVDLD--HFDAAIIDPPRNGAAAQCAELALSNIPVIAMVSCNPATFARD 413 Query: 332 LSILS-TTHTIERLALFDQFPYTRHME 357 L+ + ++ + + DQF ++ H+E Sbjct: 414 AEALTYGGYRLDWMQIIDQFLFSNHLE 440 >gi|304323057|gb|ADM23870.1| putative RNA methyltransferase [Brochothrix thermosphacta] Length = 90 Score = 49.3 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 26/66 (39%), Positives = 39/66 (59%), Gaps = 3/66 (4%) Query: 295 IFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCRDLSIL-STTHTIERLALFDQFP 351 I VDPPR G D+ + +++ P I+Y+SCNP +L RD +L + +E + D FP Sbjct: 16 ICVDPPRKGCDEKLLNTLLKMKPRRIVYVSCNPATLARDARVLVDGGYKLEDVQPVDMFP 75 Query: 352 YTRHME 357 T H+E Sbjct: 76 QTTHVE 81 >gi|302330887|gb|ADL21081.1| Putative RNA methyltransferase, TrmA family [Corynebacterium pseudotuberculosis 1002] Length = 439 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 10/122 (8%) Query: 256 VNNVKIVRMSSKEFTQAMRREREFNR------LKDIDIHSYRFKTIFV-DPPRSGLDDAT 308 V++V++ ++K QA+R R L + I I V DPPR G A Sbjct: 315 VHSVELSPEAAKAGKQALRNAYAAKRVVFHSALVERSIPGLPKPAIVVLDPPRVGAGQAV 374 Query: 309 VGMVQ-AYPH-ILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRK 365 + + A P +++I C+P + RD+S + + RL L D FP T H E LLVR Sbjct: 375 IDDIALASPEAVIHIGCDPATFARDMSYWQENGYVLARLQLVDAFPGTHHFETLGLLVRT 434 Query: 366 PS 367 S Sbjct: 435 KS 436 >gi|320593815|gb|EFX06218.1| tRNA methyltransferase [Grosmannia clavigera kw1407] Length = 671 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 49/185 (26%), Positives = 78/185 (42%), Gaps = 42/185 (22%) Query: 213 LLELYCGNGNFSLVLARHF-DRVLAVEIAKPSVEAARYNIAANHV--NNVKIVRMSSKEF 269 L++ Y G+G F++ LA + ++IA+ S+ AR N A N + + + + + + Sbjct: 494 LVDAYSGSGLFTITLASTLAGGSIGIDIAEQSIAYARANAALNQLPPDRCRFIAADAAQL 553 Query: 270 TQAMRREREFNRLKDIDI---HSYRFKTIFV-DPPRSGLDDATVGMVQAYP--HILYISC 323 F + D S +T+ V DPPR G D + + AY I+Y+SC Sbjct: 554 ---------FASVSGGDAAVASSPPDETVVVLDPPRKGCDAPFLRQLLAYAPARIVYVSC 604 Query: 324 NPDSLCRDLSIL------------------------STTHTIERLALFDQFPYTRHMECG 359 N + RD+ +L T + IE L FD FP T H+E Sbjct: 605 NVHTQARDVGMLVRGRVDGFAGEGLPRPGQDDVVAHGTRYAIESLRGFDFFPQTAHVEGI 664 Query: 360 VLLVR 364 +L R Sbjct: 665 AVLNR 669 >gi|302206330|gb|ADL10672.1| Putative RNA methyltransferase, TrmA family [Corynebacterium pseudotuberculosis C231] Length = 439 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 10/122 (8%) Query: 256 VNNVKIVRMSSKEFTQAMRREREFNR------LKDIDIHSYRFKTIFV-DPPRSGLDDAT 308 V++V++ ++K QA+R R L + I I V DPPR G A Sbjct: 315 VHSVELSPEAAKAGKQALRNAYAAKRVVFHSALVERSIPGLPKPAIVVLDPPRVGAGQAV 374 Query: 309 VGMVQ-AYPH-ILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRK 365 + + A P +++I C+P + RD+S + + RL L D FP T H E LLVR Sbjct: 375 IDDIALASPEAVIHIGCDPATFARDMSYWQENGYVLARLQLVDAFPGTHHFETLGLLVRT 434 Query: 366 PS 367 S Sbjct: 435 KS 436 >gi|296536690|ref|ZP_06898754.1| tRNA (uracil-5-)-methyltransferase [Roseomonas cervicalis ATCC 49957] gi|296262981|gb|EFH09542.1| tRNA (uracil-5-)-methyltransferase [Roseomonas cervicalis ATCC 49957] Length = 411 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 50/187 (26%), Positives = 86/187 (45%), Gaps = 23/187 (12%) Query: 184 ENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAK 241 +F Q ++E VL + G ++EL+ G G S LA RV+A E A Sbjct: 240 PGAFLQATPQGEAAIVEAVLDGLPKLTGKARIVELHAGLGTLSFPLAAK-ARVIAYEGAP 298 Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE--REFNRLKDIDIHSYRFKTIFVDP 299 EA AA KI QA+RR+ R+ +K+++ H+ + +DP Sbjct: 299 ---EAVAALDAAARRGGAKI---------QAVRRDLVRQPLSVKELEGHA----ALVLDP 342 Query: 300 PRSGLDDATVGMVQA-YPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHME 357 P +G + + ++ ++Y+SCNP +L RD +L + +++ DQF ++ +E Sbjct: 343 PFAGAAEQIPALAKSTLSRVIYVSCNPVALARDAKLLHAAGFRVQQATPVDQFLWSAQLE 402 Query: 358 CGVLLVR 364 V+ R Sbjct: 403 AVVVFAR 409 >gi|20140271|sp|Q9JP88|RUMA_RHOGE RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|7416824|dbj|BAA94073.1| ygcA [Rubrivivax gelatinosus] Length = 473 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 63/269 (23%), Positives = 110/269 (40%), Gaps = 28/269 (10%) Query: 101 RAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKI 160 R +L QI+ + D+ I ++ H A +R A H ++ +Q G ++ Sbjct: 187 RDRLPQIEL--AAGDEVIALVLRHLEPLSAGDAARLRAFGAEHGVQWWLQPKGPETVHRL 244 Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWV--LAATKGIQGDLLELYC 218 + L G T+ ++ + FTQ N IN +++ L A + + +++ +C Sbjct: 245 DEGGPQLAYSLPEYGVTMPFKPTD--FTQVNPQINRVLVDRAVRLLAPQPHE-RIVDWFC 301 Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278 G GNF+L LAR V +E ++ V+ AR + + + Sbjct: 302 GLGNFTLPLARRAAAVHGIEGSETLVQRAR-----------ENAAANGLAANTSFAARNL 350 Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ-------AYP-HILYISCNPDSLCR 330 F D + S VDPPR G + + P I+Y+SCNP +L R Sbjct: 351 FEMSADELMTSGAADAWLVDPPREGAFALAKSLAELRGREGWTPPRRIVYVSCNPATLAR 410 Query: 331 DLSILSTTHTIERLA--LFDQFPYTRHME 357 D ++ +A + + FP+T H+E Sbjct: 411 DAGLIVHLAGFRCVAAGVVNMFPHTAHVE 439 >gi|308276572|gb|ADO26471.1| Putative RNA methyltransferase, TrmA family [Corynebacterium pseudotuberculosis I19] Length = 438 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 10/122 (8%) Query: 256 VNNVKIVRMSSKEFTQAMRREREFNR------LKDIDIHSYRFKTIFV-DPPRSGLDDAT 308 V++V++ ++K QA+R R L + I I V DPPR G A Sbjct: 314 VHSVELSPEAAKAGKQALRNAYAAKRVVFHSALVERSIPGLPKPAIVVLDPPRVGAGQAV 373 Query: 309 VGMVQ-AYPH-ILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRK 365 + + A P +++I C+P + RD+S + + RL L D FP T H E LLVR Sbjct: 374 IDDIALASPEAVIHIGCDPATFARDMSYWQENGYVLARLQLVDAFPGTHHFETLGLLVRT 433 Query: 366 PS 367 S Sbjct: 434 KS 435 >gi|209966020|ref|YP_002298935.1| RNA (Uracil-5-)-methyltransferase, putative [Rhodospirillum centenum SW] gi|209959486|gb|ACJ00123.1| RNA (Uracil-5-)-methyltransferase, putative [Rhodospirillum centenum SW] Length = 449 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 40/168 (23%), Positives = 70/168 (41%), Gaps = 21/168 (12%) Query: 202 VLAATKGIQG--DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259 V AA G G + +L+ G+G LA RV AVE + Sbjct: 298 VAAALSGCAGAESVADLFAGSGTIGFPLAAR-TRVHAVE---------------GDAQAL 341 Query: 260 KIVRMSSKEFTQAMRRER-EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ-AYPH 317 + +++ + ER + R RF+ + +DPPR+G + + A P Sbjct: 342 ATLDQGARQLAGRLTMERRDLFRDPVTAAELARFQAVVIDPPRAGAQAQAAELARSAVPA 401 Query: 318 ILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 ++ +SCNP + RD +++ + + + DQF ++ H+E L R Sbjct: 402 VVALSCNPATFVRDARTLVEGGYRLLEVTPIDQFLWSPHLELAALFRR 449 >gi|300858618|ref|YP_003783601.1| hypothetical protein cpfrc_01201 [Corynebacterium pseudotuberculosis FRC41] gi|300686072|gb|ADK28994.1| hypothetical protein cpfrc_01201 [Corynebacterium pseudotuberculosis FRC41] Length = 439 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 10/122 (8%) Query: 256 VNNVKIVRMSSKEFTQAMRREREFNR------LKDIDIHSYRFKTIFV-DPPRSGLDDAT 308 V++V++ ++K QA+R R L + I I V DPPR G A Sbjct: 315 VHSVELSPEAAKTGKQALRNAYAAKRVVFHSALVERSIPGLPKPAIVVLDPPRVGAGQAV 374 Query: 309 VGMVQ-AYPH-ILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRK 365 + + A P +++I C+P + RD+S + + RL L D FP T H E LLVR Sbjct: 375 IDDIALASPEAVIHIGCDPATFARDMSYWQENGYVLARLQLVDAFPGTHHFETLGLLVRT 434 Query: 366 PS 367 S Sbjct: 435 KS 436 >gi|183982039|ref|YP_001850330.1| SAM-dependent methyltransferase [Mycobacterium marinum M] gi|183175365|gb|ACC40475.1| SAM-dependent methyltransferase [Mycobacterium marinum M] Length = 401 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 50/192 (26%), Positives = 80/192 (41%), Gaps = 40/192 (20%) Query: 179 IYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA---RHFDRVL 235 +Y + + QP AG M W +LY G G F+ VL RVL Sbjct: 244 VYSGLVADWAQPGAG----MTAW-------------DLYGGAGVFAAVLGDAVGESGRVL 286 Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295 +V+ A+ +A +A + V++V S + A + DI + Sbjct: 287 SVDTAR--AASAAARVALADLPQVEVVTDSVRRVLAAQ------DGGADIAV-------- 330 Query: 296 FVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPY 352 +DPPRSG + ++ +++I C S RDL + + ++ + +FD FP Sbjct: 331 -LDPPRSGAGREVIDLLADAGVRRVVHIGCEAASFARDLGLYRGHGYGVDAIKVFDAFPL 389 Query: 353 TRHMECGVLLVR 364 T H+EC LL R Sbjct: 390 THHVECVALLTR 401 >gi|114685143|ref|XP_514989.2| PREDICTED: HpaII tiny fragments locus 9C isoform 6 [Pan troglodytes] Length = 643 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 48/188 (25%), Positives = 76/188 (40%), Gaps = 43/188 (22%) Query: 213 LLELYCGNGNFSLVLAR------------------HFDRVLAVEIAKPSVEAARYNIAAN 254 +L++ CG G L LAR RV+ VE+ +VE AR N N Sbjct: 436 VLDVCCGTGTIGLALARGPMYSPPWVGRHHAFLFQKVKRVIGVELCPEAVEDARVNAQDN 495 Query: 255 HVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA 314 ++NV+ +++ + +RL + +DPPR+GL + ++ Sbjct: 496 ELSNVEFHCGRAEDLVPTL-----VSRLASQHL------VAILDPPRAGLHSKVILAIRR 544 Query: 315 YPH---ILYISCNPDS-------LCRDLS--ILSTTHTIERLALFDQFPYTRHMECGVLL 362 + +LY+SCNP + LCR S + + D FP T H E +L Sbjct: 545 AKNLRRLLYVSCNPRAAMGNFVDLCRAPSNRVKGIPFRPVKAVAVDLFPQTPHCEMLILF 604 Query: 363 --VRKPSG 368 V P+G Sbjct: 605 ERVEHPNG 612 >gi|254563645|ref|YP_003070740.1| 23S rRNA (Uracil-5-)-methyltransferase [Methylobacterium extorquens DM4] gi|254270923|emb|CAX26928.1| 23S rRNA (Uracil-5-)-methyltransferase [Methylobacterium extorquens DM4] Length = 427 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 35/145 (24%), Positives = 68/145 (46%), Gaps = 14/145 (9%) Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274 +L+CG+G F+L LA V A + ++ A + + R+++ E R Sbjct: 275 DLFCGSGPFALTLAAGAREVHAADGEAAAITA----LTRAYRAGAGYARITA-EARDLFR 329 Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA-YPHILYISCNPDSLCRDLS 333 R L +D + DPPR+G + + ++ P ++ ++C+P + RD + Sbjct: 330 RPLLGPELDALD-------AVVFDPPRAGAEAQVRRIAESKVPLVVGVACDPGTFARDAA 382 Query: 334 IL-STTHTIERLALFDQFPYTRHME 357 L + + +ER+ DQF ++ H+E Sbjct: 383 TLIAGGYRLERVTPVDQFAWSAHVE 407 >gi|258653885|ref|YP_003203041.1| deoxyribonuclease/rho motif-related TRAM [Nakamurella multipartita DSM 44233] gi|258557110|gb|ACV80052.1| deoxyribonuclease/rho motif-related TRAM [Nakamurella multipartita DSM 44233] Length = 433 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 3/69 (4%) Query: 293 KTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLSILSTT-HTIERLALFDQ 349 I +DPPRSG + I+Y++C+P +L RD + L+ + ++ L FD Sbjct: 355 AAIVLDPPRSGAGPRVCASLAGLGPDVIVYVACDPAALARDTAALAAGGYGLDSLRAFDT 414 Query: 350 FPYTRHMEC 358 FP T H+EC Sbjct: 415 FPQTHHVEC 423 >gi|319938185|ref|ZP_08012583.1| hypothetical protein HMPREF9488_03419 [Coprobacillus sp. 29_1] gi|319806706|gb|EFW03355.1| hypothetical protein HMPREF9488_03419 [Coprobacillus sp. 29_1] Length = 434 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 42/153 (27%), Positives = 74/153 (48%), Gaps = 16/153 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +L L CG G L L++H V+A++ ++ A+ N H +NV+ + + E T Sbjct: 298 VLSLNCGIGLLELSLSQH---VVAIDDKNYHIKDAKDNAKFLHKDNVEFICKNIDEATVQ 354 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYISCNPDSLCRDL 332 +++ F DI R + + R+ + V+ ++Y+S +P SL +DL Sbjct: 355 QCKKKRF------DIAVIRCEEL----SRAIKQSLVLSKVK---DVIYVSDHPSSLAKDL 401 Query: 333 SILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 LS+ + IE + D +PYT ++ V L RK Sbjct: 402 DELSSYYQIESIIPLDTYPYTSKLDTIVKLKRK 434 >gi|218532567|ref|YP_002423383.1| (uracil-5)-methyltransferase [Methylobacterium chloromethanicum CM4] gi|218524870|gb|ACK85455.1| (Uracil-5)-methyltransferase [Methylobacterium chloromethanicum CM4] Length = 431 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 35/145 (24%), Positives = 68/145 (46%), Gaps = 14/145 (9%) Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274 +L+CG+G F+L LA V A + ++ A + + R+++ E R Sbjct: 279 DLFCGSGPFALTLAAGAREVHAADGEAAAITA----LTRAYRAGAGYARITA-EARDLFR 333 Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA-YPHILYISCNPDSLCRDLS 333 R L +D + DPPR+G + + ++ P ++ ++C+P + RD + Sbjct: 334 RPLLGPELDALD-------AVVFDPPRAGAEAQVRRIAESKVPLVVGVACDPGTFARDAA 386 Query: 334 IL-STTHTIERLALFDQFPYTRHME 357 L + + +ER+ DQF ++ H+E Sbjct: 387 TLIAGGYRLERVTPVDQFAWSAHVE 411 >gi|297521608|ref|ZP_06939994.1| 23S rRNA methyluridine methyltransferase [Escherichia coli OP50] Length = 105 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 33/100 (33%), Positives = 50/100 (50%), Gaps = 11/100 (11%) Query: 276 EREFNRLKDIDIHSYRFKT--------IFVDPPRSGLDDATVGMVQ--AYPHILYISCNP 325 E RL+ + S +F T + V+PPR G+ + A I+Y SCN Sbjct: 7 ELGLTRLQFQALDSTQFATAQGEVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNA 66 Query: 326 DSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 ++ +D+ L + IER+ LFD FP+T H E LLV++ Sbjct: 67 QTMAKDVRELPG-YRIERVQLFDMFPHTAHYEVLTLLVKQ 105 >gi|254361472|ref|ZP_04977612.1| possible tRNA methyltransferase [Mannheimia haemolytica PHL213] gi|153092982|gb|EDN74008.1| possible tRNA methyltransferase [Mannheimia haemolytica PHL213] Length = 82 Score = 48.9 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 3/73 (4%) Query: 295 IFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPY 352 + V+PPR G+ + P+++Y SCN S+ D + L T + + ++ LFD F + Sbjct: 11 VIVNPPRRGIGKLLAEFLNQLGSPYLIYSSCNAVSMANDFTFL-TNYELHKVQLFDMFAH 69 Query: 353 TRHMECGVLLVRK 365 T H E LV+K Sbjct: 70 TAHYETLTFLVKK 82 >gi|148688457|gb|EDL20404.1| RIKEN cDNA 4732479N06, isoform CRA_b [Mus musculus] gi|148688458|gb|EDL20405.1| RIKEN cDNA 4732479N06, isoform CRA_b [Mus musculus] Length = 493 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 46/197 (23%), Positives = 81/197 (41%), Gaps = 28/197 (14%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 ++F Q N ML ++ G+ + LL++ CG G L LA+ +V +E+ + Sbjct: 308 DAFFQINTA-GAEMLYRIIGELSGVNSESLLLDICCGTGVIGLSLAQRASQVHGIELVEQ 366 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302 +VE AR+ A N V N + ++ + + ++ +L V+P R+ Sbjct: 367 AVEDARWTAAFNGVTNCEFHAGRAETILPQLLKSQKDEKL----------TVAVVNPARA 416 Query: 303 GLDDATVGMV---QAYPHILYISCNPDS--------LC----RDLSILSTTHTIERLALF 347 GL V + +A ++++SC P LC +L + Sbjct: 417 GLHYRVVRAIRNCRAIHTLVFVSCKPHGESTRNFIELCCPPNSAKQLLGDPFVLREAVPV 476 Query: 348 DQFPYTRHMECGVLLVR 364 D FP+T H E +L R Sbjct: 477 DLFPHTPHCELVLLFTR 493 >gi|66358588|ref|XP_626472.1| TrmA RNA methylase [Cryptosporidium parvum Iowa II] gi|46227986|gb|EAK88906.1| TrmA RNA methylase [Cryptosporidium parvum Iowa II] Length = 550 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 44/177 (24%), Positives = 77/177 (43%), Gaps = 35/177 (19%) Query: 213 LLELYCGNGNFSLVL-------ARHFDRV--LAVEIAKPSVEAARYNIAANHVNNVKIVR 263 +L++ CG G L L R+F V + ++ ++ ++ +A+ N V N K Sbjct: 357 ILDICCGVGAIGLTLLDIFRDLGRNFKDVELIGIDCSREAINSAKKNAENIGVENAKYYT 416 Query: 264 MSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHI---LY 320 +++ ++ S VDPPRSGL + V ++ I +Y Sbjct: 417 GTAESILPGFLE----------NLPSNNLVIAIVDPPRSGLHSSVVKSLRKMAKIEYLIY 466 Query: 321 ISCNPDSLCRDLSILSTT---HT--IERLALF--------DQFPYTRHMECGVLLVR 364 +SCN +SL ++ L ++ HT E +F D FP+T+H+E + L R Sbjct: 467 VSCNVESLVKNCIELCSSYDPHTDQQEYFPVFFPECAVPVDMFPFTKHVETILYLKR 523 >gi|108762606|ref|YP_633707.1| hypothetical protein MXAN_5568 [Myxococcus xanthus DK 1622] gi|108466486|gb|ABF91671.1| conserved hypothetical protein [Myxococcus xanthus DK 1622] Length = 383 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 34/109 (31%), Positives = 52/109 (47%), Gaps = 13/109 (11%) Query: 211 GDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270 G+ L+ + G F+L LA V A+EI++ + R N AAN +NN+ +V ++ +F Sbjct: 212 GEALDCFSYVGGFALQLATRARHVTAIEISEAASAQLRENAAANKLNNLDVVVANAFDF- 270 Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD-DATVGMVQAYPHI 318 L+D RF TI +DPP + DA V+ Y I Sbjct: 271 -----------LRDAVDEGKRFDTIVLDPPSFAKNKDAIPAAVRGYKEI 308 >gi|19553107|ref|NP_601109.1| SAM-dependent methyltransferase [Corynebacterium glutamicum ATCC 13032] gi|62390742|ref|YP_226144.1| RNA methyltransferase [Corynebacterium glutamicum ATCC 13032] gi|51316625|sp|Q6M4B7|Y1903_CORGL RecName: Full=Uncharacterized RNA methyltransferase Cgl1903/cg2084 gi|21324673|dbj|BAB99296.1| SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Corynebacterium glutamicum ATCC 13032] gi|41326080|emb|CAF20243.1| PUTATIVE RNA METHYLTRANSFERASE [Corynebacterium glutamicum ATCC 13032] Length = 412 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 38/154 (24%), Positives = 70/154 (45%), Gaps = 23/154 (14%) Query: 215 ELYCGNGNFSLVLARHFDRVL-AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273 +LY G G F+ ++ + +VE++ S EA +A V Sbjct: 276 DLYGGVGLFAPIITSKLQAAVHSVELSPGSAEAGEEALAGLPVT------------FHTG 323 Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGL-DDATVGMVQAYPH-ILYISCNPDSLCRD 331 R E ++L ++ + +DPPR+G D + +A P +++I C+P + RD Sbjct: 324 RVEGMASQLPSPNV-------VVLDPPRTGAGSDVLKSIAEAKPQLVIHIGCDPATFARD 376 Query: 332 LSILS-TTHTIERLALFDQFPYTRHMECGVLLVR 364 ++ + +++LA+F+ FP T H E + VR Sbjct: 377 VADWKLNGYEMDQLAVFNAFPGTHHFETIGVFVR 410 >gi|163796973|ref|ZP_02190929.1| SAM-dependent methyltransferase [alpha proteobacterium BAL199] gi|159177720|gb|EDP62271.1| SAM-dependent methyltransferase [alpha proteobacterium BAL199] Length = 454 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 48/189 (25%), Positives = 75/189 (39%), Gaps = 22/189 (11%) Query: 181 RQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240 R SF Q + + V++A +G QG L+L+CG G SL Sbjct: 283 RPPAGSFLQATRAGETAIRDIVMSAAEG-QGWRLDLFCGVGTLSL--------------- 326 Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK---TIFV 297 P V+ A V ++ +R ++ R E L D FK + Sbjct: 327 -PLVDGAPVTAVDGDVQAIRALRAAADAAALGDRLTTEARDLFDRPFEGDEFKGFDVVVF 385 Query: 298 DPPRSGLDDATVGMVQAYPHILYIS-CNPDSLCRDLSIL-STTHTIERLALFDQFPYTRH 355 DPPRSG + + + ++ CNP S RD IL + +++L DQF ++ H Sbjct: 386 DPPRSGAKEQAEALAASSVPVVVAVSCNPASFARDARILIDGGYRLDKLTPIDQFLWSPH 445 Query: 356 MECGVLLVR 364 +E + R Sbjct: 446 IELAAVFRR 454 >gi|149204354|ref|ZP_01881321.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Roseovarius sp. TM1035] gi|149142239|gb|EDM30286.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Roseovarius sp. TM1035] Length = 407 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 44/178 (24%), Positives = 83/178 (46%), Gaps = 22/178 (12%) Query: 185 NSFTQPNAGINVHML---EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241 +F Q A +L E +LA + I ++L+ G G F+L LA+ +V AVE Sbjct: 237 GAFLQATAEGEAALLAQTETILAGARRI----VDLFAGCGTFALPLAQRA-QVHAVEGEA 291 Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301 + A + A + +S++ R+ R + R+ +DPPR Sbjct: 292 EMLAA----LDAGRRGAAGLYPLSTEA--------RDLFRRPLLADELARYDGAVIDPPR 339 Query: 302 SGLDDATVGMVQA-YPHILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHME 357 +G + + +A P ++Y+SCNP + RD ++++ + + + + DQF ++ H+E Sbjct: 340 AGAEAQIAEIARARLPRLVYVSCNPLTFARDAKTLIAAGYVMGPVRVVDQFRWSTHVE 397 >gi|297570912|ref|YP_003696686.1| deoxyribonuclease/rho motif-related TRAM [Arcanobacterium haemolyticum DSM 20595] gi|296931259|gb|ADH92067.1| deoxyribonuclease/rho motif-related TRAM [Arcanobacterium haemolyticum DSM 20595] Length = 418 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 46/151 (30%), Positives = 69/151 (45%), Gaps = 22/151 (14%) Query: 213 LLELYCGNGNFSLVLAR---HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269 L++LY G+G FSLV A RVLA E + + A+ N+ + + S++ Sbjct: 278 LVDLYSGSGLFSLVGANIVGPGGRVLAFEGDERATSYAQQNLRS-------VPWASAQAA 330 Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD-DATVGMVQAYP-HILYISCNPDS 327 T R DI + DPPR+GL DA + + Q+ I +SC+ S Sbjct: 331 TIDAENIRSLTDGADI---------VIADPPRAGLGVDAAMMLAQSDARRIALVSCDSAS 381 Query: 328 LCRDLS-ILSTTHTIERLALFDQFPYTRHME 357 + RD+S +L +E A D FP T +E Sbjct: 382 MARDVSALLHAGRRLESFAAVDIFPNTHFVE 412 >gi|145295807|ref|YP_001138628.1| hypothetical protein cgR_1732 [Corynebacterium glutamicum R] gi|140845727|dbj|BAF54726.1| hypothetical protein [Corynebacterium glutamicum R] Length = 412 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 38/154 (24%), Positives = 70/154 (45%), Gaps = 23/154 (14%) Query: 215 ELYCGNGNFSLVLARHFDRVL-AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273 +LY G G F+ ++ + +VE++ S EA +A V Sbjct: 276 DLYGGVGLFAPIITSKLQAAVHSVELSPGSAEAGEEALAGLPVT------------FHTG 323 Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGL-DDATVGMVQAYPH-ILYISCNPDSLCRD 331 R E ++L ++ + +DPPR+G D + +A P +++I C+P + RD Sbjct: 324 RVEGMASQLPSPNV-------VVLDPPRTGAGSDVLKSIAEAKPQLVIHIGCDPATFARD 376 Query: 332 LSILS-TTHTIERLALFDQFPYTRHMECGVLLVR 364 ++ + +++LA+F+ FP T H E + VR Sbjct: 377 VADWKLNGYEMDQLAVFNAFPGTHHFETIGVFVR 410 >gi|71997438|ref|NP_503353.2| hypothetical protein H24K24.4 [Caenorhabditis elegans] gi|50058057|gb|AAF39900.2| Hypothetical protein H24K24.4 [Caenorhabditis elegans] Length = 603 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 38/163 (23%), Positives = 75/163 (46%), Gaps = 23/163 (14%) Query: 213 LLELYCGNGNFSLVLARHFDR-----VLAVEIAKPSVEAARYNIAANHVNNV-KIVRMSS 266 LL++ CG G L ++ + + +E+ +VE A+ N N + K + + Sbjct: 439 LLDICCGTGTIGQCLLKNIQKSQKVCCIGIEMIAEAVEDAKQNAKQNKMETCCKYIAGKA 498 Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV---GMVQAYPHILYISC 323 ++ ++MR ++ D+ R + +DPPR+G+ + + ++ ++++SC Sbjct: 499 EDTFRSMR----YHLPNGFDLRKSRVVGV-LDPPRAGMHEKVILACREMETMRRLIFVSC 553 Query: 324 NPDS-------LCRDLSILST--THTIERLALFDQFPYTRHME 357 P++ LCR S T ++ R+ D FP T HME Sbjct: 554 EPNAAISNIVNLCRPSSRKYTGDAFSVTRVQPVDMFPQTNHME 596 >gi|325068656|ref|ZP_08127329.1| RNA methyltransferase [Actinomyces oris K20] Length = 88 Score = 48.5 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 3/77 (3%) Query: 291 RFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDL-SILSTTHTIERLALF 347 R + +DPPR G + V A I+ ++C+P +L RDL ++L + +T+ ++ Sbjct: 11 RPDVVVLDPPRQGAGREVIEAVGALGAERIVLVACDPAALARDLGTLLRSGYTLGSMSAL 70 Query: 348 DQFPYTRHMECGVLLVR 364 D FP+T H E +L R Sbjct: 71 DMFPHTHHFETIAVLER 87 >gi|300023485|ref|YP_003756096.1| (uracil-5)-methyltransferase [Hyphomicrobium denitrificans ATCC 51888] gi|299525306|gb|ADJ23775.1| (Uracil-5)-methyltransferase [Hyphomicrobium denitrificans ATCC 51888] Length = 409 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 60/238 (25%), Positives = 101/238 (42%), Gaps = 28/238 (11%) Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERL----TVAGRTLIYR 181 LLD R+ +R L + +QL ++ + D V E L T A ++ Sbjct: 187 LLDGIERKLTPDVRSRLASEASALQL------ARLAIGNDIVVETLPPFLTFATADVVLS 240 Query: 182 QIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241 F Q A M+ +LAA ++ + +L+CG G F+ LA +VLA + + Sbjct: 241 --PGCFVQAVAEAETEMVRRILAAVGKVK-SVADLFCGVGAFTFPLAAR-AKVLAFDGNQ 296 Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301 P++ A N AA +K + ++ + E N I DPPR Sbjct: 297 PAIAA--LNAAAKKATGLKPITARVRDLFREPLSPLELNE----------HDAIVFDPPR 344 Query: 302 SGLDDATVGMVQA-YPHILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHME 357 +G + + ++ ++ SCNP +L RD ++ + IE + DQF Y+ H+E Sbjct: 345 AGAEAQAQRLARSKVKTVVAASCNPATLARDARHLVDGGYKIESVTPIDQFVYSAHVE 402 >gi|86740031|ref|YP_480431.1| deoxyribonuclease/Rho related TRAM [Frankia sp. CcI3] gi|86566893|gb|ABD10702.1| 23S rRNA m(5)U-1939 methyltransferase [Frankia sp. CcI3] Length = 488 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 48/155 (30%), Positives = 77/155 (49%), Gaps = 16/155 (10%) Query: 214 LELYCGNGNFSLVLARHFD---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270 L+LY G G F+ LA RV+A+E SV AA N+A +++ +R++ Sbjct: 332 LDLYAGTGLFAAFLAEDVGAAGRVIALESDAASVAAAANNLADLPWVSLRALRVTPATVR 391 Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY-PH-ILYISCNPDSL 328 + R+ D+ + +DPPR+G A V + A+ P + Y++C+P +L Sbjct: 392 GVVGTGGPAGRV-DLAV---------LDPPRTGAGPAVVAALLAHRPRAVAYVACDPVAL 441 Query: 329 CRDLSILST-THTIERLALFDQFPYTRHMECGVLL 362 RDL+ + + + L FD FP T H+EC LL Sbjct: 442 GRDLAAAAAAGYDLVVLRAFDLFPMTAHVECVALL 476 >gi|85110766|ref|XP_963621.1| hypothetical protein NCU06780 [Neurospora crassa OR74A] gi|18376010|emb|CAB91744.2| related to endo-exonuclease yNucR [Neurospora crassa] gi|28925307|gb|EAA34385.1| hypothetical protein NCU06780 [Neurospora crassa OR74A] Length = 642 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 51/221 (23%), Positives = 91/221 (41%), Gaps = 43/221 (19%) Query: 177 TLIYRQIENSFTQPNAGI--------NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA 228 + I++ SF Q N I H+L L +L++ Y G+G F++ + Sbjct: 429 SFIFQNPAGSFFQNNNSILSPFTDHIRQHILPPSLPEGAKPIKNLIDAYSGSGLFTITQS 488 Query: 229 RHF-DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDI 287 F + ++IA S++ AR N N ++ + + A + F + +D Sbjct: 489 SLFPGGSIGIDIADKSIDFARRNARLNGLDESQCKFI-------AADAPKLFESVAQLDA 541 Query: 288 HSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCRDLSILS--------- 336 + +DPPR G D + + ++Q P ++Y+SCN + RD+ +L Sbjct: 542 DE---TVVVLDPPRKGCDASFLRQLMQFAPRRVVYVSCNVHTQARDVGVLVRGRVGDTFG 598 Query: 337 -------------TTHTIERLALFDQFPYTRHMECGVLLVR 364 + + IE + FD FP T H+E +L R Sbjct: 599 EAFVDPTEGEKKMSRYVIESIRGFDFFPQTGHVEGVAILNR 639 >gi|139439227|ref|ZP_01772669.1| Hypothetical protein COLAER_01683 [Collinsella aerofaciens ATCC 25986] gi|133775251|gb|EBA39071.1| Hypothetical protein COLAER_01683 [Collinsella aerofaciens ATCC 25986] Length = 482 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 47/166 (28%), Positives = 73/166 (43%), Gaps = 21/166 (12%) Query: 210 QGD-LLELYCGNGNFSLVLARHF-DR-----VLAVEIAKPSVEAARYNIAANHVNNVKIV 262 QGD L++ YCG+G L A+ D+ +L VE + AR N N + Sbjct: 328 QGDVLMDAYCGSGTIGLCAAKAAQDKGVGIMLLGVERNHAGIADARRNAELNGLTR---- 383 Query: 263 RMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILY 320 S F + + + D ++ R + +DPPR+G + A I Y Sbjct: 384 ---SAWFMA----DDATDYILDAADNNERVDVLSIDPPRAGSTPEFLEAACALKPRRITY 436 Query: 321 ISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 ISCNP + RDL +L + + ++ D FP+T H E +L R+ Sbjct: 437 ISCNPVTQERDLHQLLDGGYRLLKITPVDMFPHTDHTETVAVLERR 482 >gi|209881001|ref|XP_002141939.1| hypothetical protein [Cryptosporidium muris RN66] gi|209557545|gb|EEA07590.1| hypothetical protein, conserved [Cryptosporidium muris RN66] Length = 547 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 43/176 (24%), Positives = 73/176 (41%), Gaps = 33/176 (18%) Query: 213 LLELYCGNGNFSLVLARHFD---------RVLAVEIAKPSVEAARYNIAANHVNNVKIVR 263 +L++ CG G+ L L + + ++ ++ + S+ A+ N N N + + Sbjct: 356 ILDICCGVGSIGLYLYKSLETLRAFYPSINLIGIDCVEESISVAKMNAKINGAENTEYIV 415 Query: 264 MSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHI---LY 320 +++ N+L I F I VDPPR GL ++ +I +Y Sbjct: 416 GKAEDILP--------NKLSSIRNEDADFLAI-VDPPRCGLHKNVTKALRISSNICSLIY 466 Query: 321 ISCNPDSLCRDLSILSTTHT-----------IERLAL-FDQFPYTRHMECGVLLVR 364 +SCN SL + L + + I +L + D FPYT H+E V L R Sbjct: 467 VSCNTKSLLSNCITLCSAYDPQSEDSKIKPFIPKLVIPIDIFPYTNHVETVVYLER 522 >gi|58038580|ref|YP_190544.1| tRNA (Uracil-5-) -methyltransferase [Gluconobacter oxydans 621H] gi|58000994|gb|AAW59888.1| tRNA (Uracil-5-) -methyltransferase [Gluconobacter oxydans 621H] Length = 441 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 75/325 (23%), Positives = 129/325 (39%), Gaps = 39/325 (12%) Query: 62 MFDQQTKERMRIDYFM---PGSLLI-----NALMIEMMATIRLEPL-------LRAKLFQ 106 MF K R R+D+ + PG ++I N ++M L P LR L Sbjct: 112 MFQTTPKTRRRMDFAVQRVPGGVIIGLHRRNGDPVDMTECHVLHPAIFGLLAPLREVLGS 171 Query: 107 IDYLTSQSDQAIVTLIYH---RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD 163 + LT + + L L A A RL+ A AR++ + I + + ++ Sbjct: 172 LGALTGRGSLMVNLLDSGPDLTLQTPAPLTSADRLKLAAFAREHDLSRISWQDPKDLGIE 231 Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNG 221 + +I ++F Q A ++ V+ + +EL+ G G Sbjct: 232 TVAQSGPVREDFGGVIVSPPPSAFLQATADAEKAIVTAVVDGLPSLNKKDVTVELFAGCG 291 Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281 + ++ RV+A E N+ A N +K S R+ Sbjct: 292 TLTFPMSEK-GRVMAYE----------GNLGA--ANCLKAA--SGGRRVDGFHRDLGRQP 336 Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSIL-STTH 339 L D+ S R + +DPP +G T+ + + A P I+Y+SCNP +L +D L + Sbjct: 337 LLPHDLKSTR--AVVLDPPYAGAGAQTMPLAKSAVPDIVYVSCNPAALEKDGKALWNAGF 394 Query: 340 TIERLALFDQFPYTRHMECGVLLVR 364 ++ L + DQF ++ +E V+L R Sbjct: 395 SVIGLTIVDQFLWSTEVEAVVVLSR 419 >gi|227504958|ref|ZP_03935007.1| SAM-dependent methyltransferase [Corynebacterium striatum ATCC 6940] gi|227198467|gb|EEI78515.1| SAM-dependent methyltransferase [Corynebacterium striatum ATCC 6940] Length = 437 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 3/71 (4%) Query: 295 IFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCRDLSILS-TTHTIERLALFDQFP 351 + +DPPR+G D V + QA P ++++ C+P + RDL + ++RL + + FP Sbjct: 363 VVLDPPRTGAGDEVVLAVAQAGPRSVVHVGCDPATFARDLKAWKEAGYALKRLTMVNAFP 422 Query: 352 YTRHMECGVLL 362 T H E LL Sbjct: 423 GTHHFETMALL 433 >gi|226227187|ref|YP_002761293.1| hypothetical protein GAU_1781 [Gemmatimonas aurantiaca T-27] gi|226090378|dbj|BAH38823.1| hypothetical protein [Gemmatimonas aurantiaca T-27] Length = 468 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 49/186 (26%), Positives = 82/186 (44%), Gaps = 16/186 (8%) Query: 186 SFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 +F Q NA + + E V AA T+ +++ Y G G + LAR V+AVE Sbjct: 287 AFAQVNARVADALREHVYAAVTQFAPQRVVDGYSGTGLLTERLARAGREVIAVEADAMGA 346 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 + A + V ++ M ER L D+ + + ++PPR G+ Sbjct: 347 RRTEERLRAAG----EAVAGRAQVVCDLM--ERAIPGLA-TDVQAP--DVVVLNPPRRGV 397 Query: 305 DDATVG-----MVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359 D +++ ++Y+SC+P +L RDLS + + + + FD FP T H+E Sbjct: 398 DARVTAWLEDEIMRPARGVVYVSCDPATLARDLSRMPSWDIVS-VHCFDMFPQTAHVETV 456 Query: 360 VLLVRK 365 +L R Sbjct: 457 CVLQRS 462 >gi|237836119|ref|XP_002367357.1| hypothetical protein TGME49_050750 [Toxoplasma gondii ME49] gi|211965021|gb|EEB00217.1| hypothetical protein TGME49_050750 [Toxoplasma gondii ME49] gi|221505959|gb|EEE31594.1| RNA m5u methyltransferase, putative [Toxoplasma gondii VEG] Length = 1116 Score = 48.1 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 40/148 (27%), Positives = 64/148 (43%), Gaps = 26/148 (17%) Query: 231 FDRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSKEFTQAMRREREFNRLKDIDIHS 289 F RV+ +E+ + +V A+ N NH+ V + +++ + ++R Sbjct: 830 FPRVVGIEMVEEAVRHAKENADRNHMAKYVDFICGKAEDVLPQLLQDR------------ 877 Query: 290 YRFKT---IFVDPPRSGLDDATVGMV---QAYPHILYISCNPDSLCRDLSILSTTHTIER 343 YR T VDPPR+GL + + Q ++Y+SCNP S+ + L T R Sbjct: 878 YRGCTNLAAIVDPPRAGLHSRVLDAILDFQPIKRLVYVSCNPTSMVANCIKLCTPSPSNR 937 Query: 344 -------LALFDQFPYTRHMECGVLLVR 364 D FP+T H E +LL R Sbjct: 938 DPFVPMQAVAVDMFPHTLHCEGVLLLCR 965 >gi|167519923|ref|XP_001744301.1| hypothetical protein [Monosiga brevicollis MX1] gi|163777387|gb|EDQ91004.1| predicted protein [Monosiga brevicollis MX1] Length = 211 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 46/172 (26%), Positives = 73/172 (42%), Gaps = 32/172 (18%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK-IVRMSSKEFTQ 271 LL++ G G + A RV+ E+ + +VE A++N N + N + K + Sbjct: 44 LLDICSGTGTIGQLYANRVRRVIGFELVESAVEDAKHNAELNGLTNCSYFAGRAEKTMPE 103 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH-------ILYISCN 324 R +E R+ I VDPPR GL + +A H ++Y++CN Sbjct: 104 VAARVQE-ERVVGI-----------VDPPRCGLRNE---FARALMHGSDLILRLVYVACN 148 Query: 325 PDS-------LCRDLS--ILSTTHTIERLALFDQFPYTRHMECGVLLVRKPS 367 + LCR S + R+ D FP+T HME +LL+R + Sbjct: 149 FKASHTNIVDLCRKTSKRWQGDPFQLVRVRAVDLFPHTPHMEVVLLLLRGAA 200 >gi|329889453|ref|ZP_08267796.1| 23S rRNA uracil-5--methyltransferase rumA [Brevundimonas diminuta ATCC 11568] gi|328844754|gb|EGF94318.1| 23S rRNA uracil-5--methyltransferase rumA [Brevundimonas diminuta ATCC 11568] Length = 414 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 42/179 (23%), Positives = 73/179 (40%), Gaps = 24/179 (13%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 F Q + M+E + A +G + + +L+CG G F+ LA + + Sbjct: 247 GGFLQASPAAEAAMVERAVEAVRGAK-KVADLFCGAGTFTFPLA---EIASVTAADSAAA 302 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 A + +K + +++ RR LK D I +DPPR+G Sbjct: 303 SIAALKAGLSTAQGLKGIEAQARDL---FRRPLSPYDLKGCD-------AIVLDPPRAGA 352 Query: 305 DDATVGMVQAYPH-----ILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHME 357 + T Q P ++ +SCNP + RD +L +E++ DQF ++ H+E Sbjct: 353 LEQT----QQLPGTKASVVVGVSCNPQTFARDARVLVDAGFRLEKVTPIDQFIWSTHIE 407 >gi|227833269|ref|YP_002834976.1| putative SAM-dependent methyltransferase [Corynebacterium aurimucosum ATCC 700975] gi|262184253|ref|ZP_06043674.1| putative SAM-dependent methyltransferase [Corynebacterium aurimucosum ATCC 700975] gi|227454285|gb|ACP33038.1| putative SAM-dependent methyltransferase [Corynebacterium aurimucosum ATCC 700975] Length = 430 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 33/97 (34%), Positives = 48/97 (49%), Gaps = 15/97 (15%) Query: 282 LKDIDIHSYRFKT------------IFVDPPRSGLDDATVGMVQAY-PH-ILYISCNPDS 327 L DID+H K + +DPPR+G V + A P +L+I C+P + Sbjct: 331 LSDIDVHFRTAKVEQAASQLPRPARVILDPPRTGAGVEVVEAIAAAAPQRVLHIGCDPAT 390 Query: 328 LCRDLSILST-THTIERLALFDQFPYTRHMECGVLLV 363 RD++ S + +ERLA+ + FP T H E LLV Sbjct: 391 FARDIAAWSERGYCLERLAMVNAFPGTHHFETLALLV 427 >gi|156102601|ref|XP_001616993.1| hypothetical protein [Plasmodium vivax SaI-1] gi|148805867|gb|EDL47266.1| hypothetical protein, conserved [Plasmodium vivax] Length = 763 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 39/168 (23%), Positives = 80/168 (47%), Gaps = 18/168 (10%) Query: 112 SQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQ-LIGRANKTKICLDRDYVDER 170 S ++Q I+ L+D ++ ++ L A+ I+ ++ K+ +R+ V Sbjct: 361 SDTEQQILVSFVGFSLNDKAKKALTKISLKLGAKNTSIKGILYNVETNKLKQNRNEV--- 417 Query: 171 LTVAGRTLIYRQI--------ENSFTQPNAGINVHMLEWVLAATKGI-----QGDLLELY 217 T+ G+ IY N+F QPN +N +++ +L + Q + +L+ Sbjct: 418 -TLYGQNCIYHSCGGYTYKLGANTFFQPNQHLNECIVQIILKLVRSYKINAKQSCVYDLF 476 Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265 CG G +SL L+ F +V++V+ + +++ N+ N+V NVK ++ Sbjct: 477 CGIGFYSLPLSDLFGQVISVDYSIDNIKNLEENVKMNNVKNVKCFNLN 524 Score = 40.4 bits (93), Expect = 0.43, Method: Compositional matrix adjust. Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 7/73 (9%) Query: 295 IFVDPPRSGLDDA----TVGMVQAYPHILYISCNPDSLCRDLSILST-THTIERLALFDQ 349 + ++PPR G + G+ Y I+YISCN +S RD++ LS + + + D Sbjct: 658 VIINPPRKGCEKVFRRWLRGLCCRY--IIYISCNANSQFRDINHLSNLGYMVREIIPLDT 715 Query: 350 FPYTRHMECGVLL 362 FP T H E LL Sbjct: 716 FPRTPHFETVALL 728 >gi|296283794|ref|ZP_06861792.1| putative RNA methyltransferase [Citromicrobium bathyomarinum JL354] Length = 400 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 52/186 (27%), Positives = 79/186 (42%), Gaps = 26/186 (13%) Query: 185 NSFTQPNAGINVHML----EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240 +F QP A +L EW G + +L+ G G F+ LA +VLA E Sbjct: 234 GAFLQPTADGEAALLSAAKEWC-----GDAATIADLFSGLGTFAFALAGPA-KVLAAEAD 287 Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300 + A H+ R S K ++ R+ + L +I RF + +DPP Sbjct: 288 R-----------AAHLACQAAARASGKP-VHSLHRDLFRDPLTAAEI--SRFDCVLLDPP 333 Query: 301 RSGLDDATVGMVQAYPH-ILYISCNPDSLCRDLSILSTTH-TIERLALFDQFPYTRHMEC 358 R+G + + Q+ ++YISCNP S RD L+ + L QF ++ H+E Sbjct: 334 RAGARNQADMIDQSSVRRVVYISCNPQSWARDARRLADGDFRLAELRPVGQFRWSTHVEL 393 Query: 359 GVLLVR 364 L VR Sbjct: 394 ASLFVR 399 >gi|221484988|gb|EEE23278.1| RNA m5u methyltransferase, putative [Toxoplasma gondii GT1] Length = 1116 Score = 48.1 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 40/148 (27%), Positives = 64/148 (43%), Gaps = 26/148 (17%) Query: 231 FDRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSKEFTQAMRREREFNRLKDIDIHS 289 F RV+ +E+ + +V A+ N NH+ V + +++ + ++R Sbjct: 830 FPRVVGIEMVEEAVRHAKENADRNHMAKYVDFICGKAEDVLPQLLQDR------------ 877 Query: 290 YRFKT---IFVDPPRSGLDDATVGMV---QAYPHILYISCNPDSLCRDLSILSTTHTIER 343 YR T VDPPR+GL + + Q ++Y+SCNP S+ + L T R Sbjct: 878 YRGCTNLAAIVDPPRAGLHSRVLDAILDFQPIKRLVYVSCNPTSMVANCIKLCTPSPSNR 937 Query: 344 -------LALFDQFPYTRHMECGVLLVR 364 D FP+T H E +LL R Sbjct: 938 DPFVPMQAVAVDMFPHTLHCEGVLLLCR 965 >gi|221640698|ref|YP_002526960.1| 23S rRNA (Uracil-5-)-methyltransferase RumA [Rhodobacter sphaeroides KD131] gi|221161479|gb|ACM02459.1| 23S rRNA (Uracil-5-)-methyltransferase RumA [Rhodobacter sphaeroides KD131] Length = 404 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 39/147 (26%), Positives = 72/147 (48%), Gaps = 15/147 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + +L+ G G FSL LA + V AVE + A + +K V + +++ Sbjct: 262 VTDLFAGAGTFSLPLAAGAE-VHAVE--GDAAMMAALDRGWRQAPGLKRVTVETRDL--- 315 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA-YPHILYISCNPDSLCRD 331 RR E + L+ R + + +DPPR+G + + A P + ++SCNP + RD Sbjct: 316 FRRPLEPDELR-------RTEAVVIDPPRAGAEAQARALACAAVPVVAFVSCNPVTFARD 368 Query: 332 -LSILSTTHTIERLALFDQFPYTRHME 357 L ++ + ++ + + DQF ++ H+E Sbjct: 369 ALILMRGGYRLDWVQVVDQFRWSSHVE 395 >gi|325120649|emb|CBZ56204.1| hypothetical protein NCLIV_066290 [Neospora caninum Liverpool] Length = 1183 Score = 47.8 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 40/144 (27%), Positives = 63/144 (43%), Gaps = 20/144 (13%) Query: 233 RVLAVEIAKPSVEAARYNIAANHV-NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291 RV+ VE+ + +V A N N + +V V +++ + +ER + D+ Sbjct: 906 RVVGVEMVEEAVRNAEQNAERNQLAQDVDFVCGKAEDVLPRLLQER-YRGCTDL------ 958 Query: 292 FKTIFVDPPRSGLDDATVGMV---QAYPHILYISCNPDSLCRDLSILSTTHTIERLAL-- 346 VDPPR+GL + + Q ++YISCNP S+ + L T R Sbjct: 959 --AAIVDPPRAGLHSRVLEAILDFQPIKRLVYISCNPASMVANCVKLCTPSPSNRDPFVP 1016 Query: 347 -----FDQFPYTRHMECGVLLVRK 365 D FP+T H E +LL R+ Sbjct: 1017 VQAVPVDMFPHTLHCEAVLLLSRQ 1040 >gi|168334686|ref|ZP_02692826.1| RNA methyltransferase, TrmA family protein [Epulopiscium sp. 'N.t. morphotype B'] Length = 454 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 46/156 (29%), Positives = 68/156 (43%), Gaps = 20/156 (12%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + +LY G G + ++A +V+ +EI +V AA+ N N + N + + Sbjct: 305 VFDLYSGTGTIAQIMALKAKKVVGIEIVAEAVAAAKENAKLNGLENCEFIAG-------- 356 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330 + L ID I VDPPR G+ + + + ILYISC SL R Sbjct: 357 -------DVLTQIDNADVGPDVIVVDPPRDGIHRKALEKIINFGVAEILYISCKATSLAR 409 Query: 331 DLSILSTT--HTIERLALFDQFPYTRHMECGVLLVR 364 DL + H + L + D F T H+E VLL R Sbjct: 410 DLVAFAEGGYHVAQSLCV-DMFAQTYHVETVVLLKR 444 >gi|169623498|ref|XP_001805156.1| hypothetical protein SNOG_14991 [Phaeosphaeria nodorum SN15] gi|111056414|gb|EAT77534.1| hypothetical protein SNOG_14991 [Phaeosphaeria nodorum SN15] Length = 577 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 45/172 (26%), Positives = 79/172 (45%), Gaps = 33/172 (19%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK---IVRMSSKEF 269 L++ Y G+G F++ L+ F L ++I+ S+++A N N++ + I ++K F Sbjct: 396 LIDAYSGSGLFTITLSELFKSSLGIDISSSSIDSATTNARLNNLPSTTTRFIAADAAKLF 455 Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDS 327 +E + +DPPR G D++ + +V+ P ++Y+SCN + Sbjct: 456 ASISSPAKE--------------TVVMIDPPRKGCDESFLRQLVEYGPQRVVYVSCNVHT 501 Query: 328 LCRDLSILSTT--------------HTIERLALFDQFPYTRHMECGVLLVRK 365 RD+ +L + IE L FD FP T H+E +L RK Sbjct: 502 QARDVGVLVGGMMGVDGGFGKGEGCYEIESLRGFDFFPMTGHVEGVAVLRRK 553 >gi|309807711|ref|ZP_07701648.1| conserved hypothetical protein [Lactobacillus iners LactinV 01V1-a] gi|308169042|gb|EFO71123.1| conserved hypothetical protein [Lactobacillus iners LactinV 01V1-a] Length = 84 Score = 47.8 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 3/74 (4%) Query: 295 IFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPY 352 + VDPPR+GL+ V ++ P +YISCNP +L RDL +LS + + + D P Sbjct: 11 LIVDPPRTGLNKQLVKTLLTCKPKDFVYISCNPSTLARDLVLLSQAYDVRLIQPVDMMPQ 70 Query: 353 TRHME-CGVLLVRK 365 T E L++RK Sbjct: 71 TPRWEGIAKLVLRK 84 >gi|308272551|emb|CBX29155.1| hypothetical protein N47_J01360 [uncultured Desulfobacterium sp.] Length = 388 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 12/90 (13%) Query: 211 GDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270 G L+ +C +G F+L +A++ +V A +I+K ++E ++ N N + N+ Sbjct: 217 GSGLDCFCYSGGFALNMAKNCCQVEAFDISKDAIELSKKNALLNGMENI----------- 265 Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPP 300 + + F+RLK D +F TI +DPP Sbjct: 266 -SFEVDNVFDRLKVYDSQKKKFDTIVLDPP 294 >gi|237785642|ref|YP_002906347.1| putative SAM-dependent methyltransferase [Corynebacterium kroppenstedtii DSM 44385] gi|237758554|gb|ACR17804.1| putative SAM-dependent methyltransferase [Corynebacterium kroppenstedtii DSM 44385] Length = 463 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 51/193 (26%), Positives = 85/193 (44%), Gaps = 17/193 (8%) Query: 172 TVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFSLVLA-R 229 + GRT + +F Q ++G E V + G +LY G G F+ +LA + Sbjct: 272 SAEGRTFVLPP--TAFWQAHSGAPTRYRELVRELLPEVHGGAAWDLYGGIGLFADILAEK 329 Query: 230 HFDRVLAVEIAKPSVEAAR--YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDI 287 V +VEI K + R N A + +R + +A R N+ +D+ Sbjct: 330 TRGPVDSVEIDKNARTWGRRSLNTLAEPSFSPSSIRFLTSRVDRAWSSLRRNNK-GGVDL 388 Query: 288 HSYRFKTIFVDPPRSGLDDATVGMV-QAYPH-ILYISCNPDSLCRDLSI-LSTTHTIERL 344 + +DPPR G +G + A+P +++I+C+P + RD + L + I + Sbjct: 389 -------VVLDPPRKGAGTKVIGQIAAAHPEAVVHIACDPATGARDYAAWLDHGYEISSM 441 Query: 345 ALFDQFPYTRHME 357 + D FP T HME Sbjct: 442 RVIDAFPGTHHME 454 >gi|312196121|ref|YP_004016182.1| deoxyribonuclease/rho motif-related TRAM [Frankia sp. EuI1c] gi|311227457|gb|ADP80312.1| deoxyribonuclease/rho motif-related TRAM [Frankia sp. EuI1c] Length = 494 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 25/71 (35%), Positives = 41/71 (57%), Gaps = 3/71 (4%) Query: 296 FVDPPRSGLD-DATVGMVQAYPH-ILYISCNPDSLCRDLSI-LSTTHTIERLALFDQFPY 352 +DPPR+G D ++ P + Y++C+P +L RDL++ +S + + + FD FP Sbjct: 421 VLDPPRAGAGVDVLTALLGLRPRAVAYVACDPVALGRDLAVAVSCGYRVSDVRAFDLFPM 480 Query: 353 TRHMECGVLLV 363 T H+EC LV Sbjct: 481 TAHIECVARLV 491 >gi|213023407|ref|ZP_03337854.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] gi|213612570|ref|ZP_03370396.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 60 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 21/48 (43%), Positives = 33/48 (68%), Gaps = 1/48 (2%) Query: 318 ILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 I+Y+SCNP +L RD ++++ + + RLA+ D FP+T H+E VL R Sbjct: 12 IVYVSCNPATLARDSEALVNAGYEVTRLAMLDMFPHTGHLESMVLFER 59 >gi|256825305|ref|YP_003149265.1| 23S rRNA methyluridine methyltransferase [Kytococcus sedentarius DSM 20547] gi|256688698|gb|ACV06500.1| SAM-dependent methyltransferase, tRNA(uracil-5)-methyltransferase [Kytococcus sedentarius DSM 20547] Length = 413 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 51/175 (29%), Positives = 67/175 (38%), Gaps = 53/175 (30%) Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIA----------------KPSVEAARYNIAANHVNN 258 +LYCG G F+L A + VEIA +P AAR+ +A ++ Sbjct: 256 DLYCGVGGFALHAAAAGTEAVGVEIAADAVRGARAGAAALTQRPGGGAARFVVA--DASD 313 Query: 259 VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH- 317 V ++ AM V+PPR GL M+ A Sbjct: 314 PAAVLAAAGTDRDAM----------------------VVNPPRRGLGPDLPAMLDARSPA 351 Query: 318 ---------ILYISCNPDSLCRDLSILSTTHTIERLA-LFDQFPYTRHMECGVLL 362 ++Y SCNP +L DL+ L H R A LFD FP T H E VLL Sbjct: 352 ADPASALRTLVYSSCNPATLATDLAGLP--HWQVRSARLFDMFPNTDHAEVVVLL 404 >gi|84500744|ref|ZP_00998993.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Oceanicola batsensis HTCC2597] gi|84391697|gb|EAQ04029.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Oceanicola batsensis HTCC2597] Length = 405 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 36/147 (24%), Positives = 71/147 (48%), Gaps = 15/147 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + +L+ G G F+L LA V+AVE + +EA + +K + +++ Sbjct: 264 VADLFAGIGTFALPLA-ETSEVVAVEGDRAMMEA--LDRGWRGTQGLKKIETVTRDL--- 317 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA-YPHILYISCNPDSLCRD 331 R + L+ F + +DPPR+G + + A P I ++SCNP + RD Sbjct: 318 FRNPLLADELR-------HFDAVVIDPPRAGAEAQVAELADAGVPVIAHVSCNPVTFARD 370 Query: 332 LS-ILSTTHTIERLALFDQFPYTRHME 357 + ++++ + + + + DQF ++ H+E Sbjct: 371 AARLVASGYRMGPVTVVDQFRWSAHVE 397 >gi|159465141|ref|XP_001690781.1| tRNA (uracil-5-)-methyltransferase [Chlamydomonas reinhardtii] gi|158279467|gb|EDP05227.1| tRNA (uracil-5-)-methyltransferase [Chlamydomonas reinhardtii] Length = 746 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 36/121 (29%), Positives = 50/121 (41%), Gaps = 13/121 (10%) Query: 178 LIYRQIENSFTQPN---AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRV 234 L ++ SF Q N A + ++ A G Q L++LYCG G SL LA V Sbjct: 614 LTFQISAASFFQTNTAQAAVLYDVVRQAAALRPGRQDSLVDLYCGTGTISLSLAPECKSV 673 Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294 L VE +V AR N N +N V + R+ +RL + D YR Sbjct: 674 LGVEAVAAAVSDARLNARLNGASNALFVAAGA----------RDLDRLCNGDDAPYRLTA 723 Query: 295 I 295 + Sbjct: 724 V 724 >gi|46447632|ref|YP_008997.1| putative 23S rRNA (Uracil-5-)-methyltransferase [Candidatus Protochlamydia amoebophila UWE25] gi|51316627|sp|Q6M9M7|Y1998_PARUW RecName: Full=Uncharacterized RNA methyltransferase pc1998 gi|46401273|emb|CAF24722.1| putative 23S rRNA (Uracil-5-)-methyltransferase [Candidatus Protochlamydia amoebophila UWE25] Length = 383 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 49/209 (23%), Positives = 87/209 (41%), Gaps = 23/209 (11%) Query: 166 YVDERLTVAGRTLIYRQIEN---SFTQPN-AGINVHMLEWVLAATKGI---QGDLLELYC 218 + D+ V G ++ + F N A N+ + E +L K + ++E + Sbjct: 188 FTDKWEKVWGEPYLWESFDGVKICFQPSNFAQANLDLFEKLLKKVKSWVREKAKVVEFFA 247 Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278 G G L +A + EI S E Y A +++ +S K + Sbjct: 248 GVGTIGLSVAAKCSWIKCEEINPHSKECFYY--AKQQLSS----EISQKIMFYTGSADEN 301 Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQ-AYPHILYISCNPDSLCRDL-SIL 335 N L+ D T+ VDPPR GL + G+ Q + ++Y+SC DS ++ +++ Sbjct: 302 LNLLQGAD-------TVIVDPPRKGLSRKFIEGLTQSSVDQLIYVSCGWDSFKKNKETLI 354 Query: 336 STTHTIERLALFDQFPYTRHMECGVLLVR 364 S +++L + FP + H+E L R Sbjct: 355 SQGWNLKKLEGYSLFPGSEHIELLTLFER 383 >gi|315500113|ref|YP_004088916.1| (uracil-5)-methyltransferase [Asticcacaulis excentricus CB 48] gi|315418125|gb|ADU14765.1| (Uracil-5)-methyltransferase [Asticcacaulis excentricus CB 48] Length = 419 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 41/175 (23%), Positives = 76/175 (43%), Gaps = 16/175 (9%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 SF Q + M+ V A G + + +L+CG G F+ LA V A + A +V Sbjct: 252 GSFLQASPHSEADMVALVKDAVAGTK-RVADLFCGAGTFTFPLAETAS-VYAADGAGGAV 309 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 A + I +K + + +++ +A E + + DPPR+G Sbjct: 310 RALKAAI--GRAPGLKPITVEARDLFRAPVVAEEMA----------GWDAVVFDPPRAGA 357 Query: 305 DDATVGMVQA-YPHILYISCNPDSLCRDLSILSTTH-TIERLALFDQFPYTRHME 357 + + ++ ++ +SCN + RD IL+ ++R+ DQF ++ H+E Sbjct: 358 EAQAQQIARSQVARVVGVSCNIQTFARDAKILTEAGFQLDRVTPIDQFLWSGHVE 412 >gi|114769865|ref|ZP_01447475.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [alpha proteobacterium HTCC2255] gi|114549570|gb|EAU52452.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [alpha proteobacterium HTCC2255] Length = 407 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 40/158 (25%), Positives = 71/158 (44%), Gaps = 37/158 (23%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI-----------AANHVNNVKI 261 +++L+ G G F+L ++ +K +V A ++ AA ++++K Sbjct: 267 VVDLFAGCGTFALPIS-----------SKATVHALEGDVNMIAALDSGWRAAGGLHDIK- 314 Query: 262 VRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA-YPHILY 320 E RR + K ID I +DPPR+G V + +A I + Sbjct: 315 -----SETRDLFRRPLMPDEFKKID-------AIVIDPPRAGAVSQVVEIAKANVGRIAF 362 Query: 321 ISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHME 357 +SCNP + RD SIL + + ++ + + DQF + H+E Sbjct: 363 VSCNPATFARDASILCNNGYNLDWVQIIDQFLWNPHIE 400 >gi|332526108|ref|ZP_08402246.1| 23S rRNA m(5)U1939 methyltransferase [Rubrivivax benzoatilyticus JA2] gi|332109951|gb|EGJ10579.1| 23S rRNA m(5)U1939 methyltransferase [Rubrivivax benzoatilyticus JA2] Length = 473 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 62/268 (23%), Positives = 111/268 (41%), Gaps = 26/268 (9%) Query: 101 RAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKI 160 R +L QI+ + D+ + ++ H A +R A H ++ +Q G ++ Sbjct: 187 RDRLPQIEL--AAGDEVVALVLRHLEPLSAGDAARLRAFGAEHGVQWWLQPKGPETVHRL 244 Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCG 219 + L G T+ ++ + FTQ N IN +++ + + +++ +CG Sbjct: 245 DDGGPQLSYSLPEYGVTMPFKPTD--FTQVNPQINRVLVDRAVRLLDPKPHERVVDWFCG 302 Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279 GNF+L LAR V +E ++ V+ AR + + + A R E Sbjct: 303 LGNFTLPLARRAAAVHGIEGSETLVQRAR---------DNAAANGLAANTSFAARNLFEM 353 Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ-------AYP-HILYISCNPDSLCRD 331 + D + S VDPPR G + + P I+Y+SCNP +L RD Sbjct: 354 S--ADELMTSGAADAWLVDPPREGAFALAKSLAELRGREGWTPPRRIVYVSCNPATLARD 411 Query: 332 LSILSTTHTIERLA--LFDQFPYTRHME 357 ++ +A + + FP+T H+E Sbjct: 412 AGLIVHLAGFRCVAAGVVNMFPHTAHVE 439 >gi|330466498|ref|YP_004404241.1| deoxyribonuclease/rho motif-related TRAM [Verrucosispora maris AB-18-032] gi|328809469|gb|AEB43641.1| deoxyribonuclease/rho motif-related TRAM [Verrucosispora maris AB-18-032] Length = 422 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 41/134 (30%), Positives = 64/134 (47%), Gaps = 19/134 (14%) Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292 RV VE A V AAR N+ ++ V + + A+ R R +D+ Sbjct: 302 RVTLVEAAGDGVAAARENL-----RDLAQVEVVAARVETALARRRITG---PVDV----- 348 Query: 293 KTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCRDLSILSTTH-TIERLALFDQ 349 + +DPPRSG V +V A P + Y++C+P + RDL + + + L +D Sbjct: 349 --VVLDPPRSGAGARVVRDVVAAGPRAVAYVACDPAAFARDLRVFTDLGWRLAALRGYDL 406 Query: 350 FPYTRHME-CGVLL 362 FP T+H+E G+LL Sbjct: 407 FPMTQHVELVGLLL 420 >gi|257456213|ref|ZP_05621410.1| tRNA (Uracil-5-)-methyltransferase family protein [Treponema vincentii ATCC 35580] gi|257446299|gb|EEV21345.1| tRNA (Uracil-5-)-methyltransferase family protein [Treponema vincentii ATCC 35580] Length = 380 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 40/148 (27%), Positives = 62/148 (41%), Gaps = 11/148 (7%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +L+ Y G G FS L + VE + ++ AA+ N+ R + A Sbjct: 234 ILDFYAGVGTFSAFLTEKAAELHLVEHNERALLAAQQNLDRIIAEKNSSCRCFFHTVSDA 293 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQA-YPHILYISCNPDSLCR 330 DI ++ + +DPPR G+ + + QA P I Y+SCNP + R Sbjct: 294 --------GWPDIPAAKLKYDAVIIDPPRQGVHSRVLTYLGQAKIPRIHYVSCNPATFVR 345 Query: 331 DLSILST-THTIERLALFDQFPYTRHME 357 D L++ + LFD +P T H E Sbjct: 346 DAKKLTSLGYRFTEYRLFDFYPQTHHCE 373 >gi|260752395|ref|YP_003225288.1| (uracil-5)-methyltransferase [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258551758|gb|ACV74704.1| (Uracil-5)-methyltransferase [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 397 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 2/69 (2%) Query: 291 RFKTIFVDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDL-SILSTTHTIERLALFD 348 RF+ I +DPPR+G + + + I+Y+SCNP + RD ++L + + + Sbjct: 321 RFECIILDPPRAGAKEQIANLAILPNGRIVYVSCNPATFARDAKTLLESGWVLHWVKPVG 380 Query: 349 QFPYTRHME 357 QFP++ H+E Sbjct: 381 QFPWSLHVE 389 >gi|146278673|ref|YP_001168832.1| SAM-dependent methyltransferase related to tRNA (uracil-5-)-methyltransferase-like protein [Rhodobacter sphaeroides ATCC 17025] gi|145556914|gb|ABP71527.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Rhodobacter sphaeroides ATCC 17025] Length = 404 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 21/69 (30%), Positives = 41/69 (59%), Gaps = 2/69 (2%) Query: 291 RFKTIFVDPPRSGLDDATVGMVQA-YPHILYISCNPDSLCRDLSIL-STTHTIERLALFD 348 R + + +DPPR+G + + +A P I ++SCNP + RD ++L + ++ + + D Sbjct: 327 RAEAVVIDPPRAGAEAQCAALARARVPVIAFVSCNPVTFARDAALLVRAGYRLDWVQVVD 386 Query: 349 QFPYTRHME 357 QF ++ H+E Sbjct: 387 QFRWSAHVE 395 >gi|114762227|ref|ZP_01441695.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Pelagibaca bermudensis HTCC2601] gi|114545251|gb|EAU48254.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Roseovarius sp. HTCC2601] Length = 407 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 46/175 (26%), Positives = 79/175 (45%), Gaps = 16/175 (9%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 +F Q +L V A +G + +++L+ G G F+L LA RV AVE K Sbjct: 237 GAFLQATPEGEAALLAAVREAVRGAR-HVVDLFAGCGTFALPLAEEM-RVHAVEGDKGMT 294 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 A + +K V +++ + N L D+ RF +DPPR+G Sbjct: 295 AA--LDKGWRMAEGLKHVTHEARDLFR--------NPLLPEDLE--RFDAAVIDPPRAGA 342 Query: 305 DDATVGMVQA-YPHILYISCNPDSL-CRDLSILSTTHTIERLALFDQFPYTRHME 357 + + +A P I ++SCNP + ++ + + I+ L + DQF ++ H+E Sbjct: 343 EAQVAELARAGIPRIAFVSCNPVTFARDAAALDAAGYVIDWLQVVDQFRWSTHVE 397 >gi|330876375|gb|EGH10524.1| 23S rRNA m(5)U1939 methyltransferase [Pseudomonas syringae pv. glycinea str. race 4] Length = 364 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 34/100 (34%), Positives = 50/100 (50%), Gaps = 3/100 (3%) Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNF 223 D + RL L +R F Q NA +N M+E L + + +++L+CG GNF Sbjct: 261 DTLGYRLEPWNLQLAWR--PGDFIQVNAAVNTAMIEQALQWLAPAKDERVMDLFCGLGNF 318 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVR 263 +L LA V+AVE VE A N +N ++NV+ R Sbjct: 319 ALPLAGLAREVVAVEGVATMVERAAVNAMSNDLHNVQFFR 358 >gi|307108166|gb|EFN56407.1| hypothetical protein CHLNCDRAFT_22531 [Chlorella variabilis] Length = 486 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 40/151 (26%), Positives = 61/151 (40%), Gaps = 18/151 (11%) Query: 162 LDRDYVDERLTVAGRTLIYRQIE-NSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYC 218 +DR + +R+ + Q+ NSF Q N L ++AA G++ LL+LYC Sbjct: 290 VDRLWTQKRVGCLPAAAVALQVSANSFFQTNT-RQAEALYGLVAAAAGLRATDVLLDLYC 348 Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278 G G+ L LA V VE++ +V A N A N + N ++ ++ Sbjct: 349 GTGSIGLTLAAACRHVHGVEVSAAAVRDAERNAALNGIANASFLQGDLQKLQLQGLLPHP 408 Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309 + VDP R GL A V Sbjct: 409 --------------DVVVVDPARPGLSPAVV 425 >gi|86356556|ref|YP_468448.1| RNA-methyltransferase protein [Rhizobium etli CFN 42] gi|86280658|gb|ABC89721.1| probable RNA-methyltransferase protein [Rhizobium etli CFN 42] Length = 416 Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust. Identities = 54/175 (30%), Positives = 78/175 (44%), Gaps = 16/175 (9%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 F Q M E VLA G + +L+ G G FSL LAR RV AVE + Sbjct: 249 GGFAQATKPAEEAMAELVLAHA-GKAKRIADLFAGAGTFSLRLAR-IGRVHAVEAE--AA 304 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 A + AA +K V + ++ RR LK D+ + DPPR+G Sbjct: 305 ALAALDQAARKTQGLKPVSVEKRDL---FRRPLMTQELKPYDM-------VVFDPPRAGA 354 Query: 305 DDATVGMVQA-YPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHME 357 + + ++ I +SCNP +L RDL+ L + I ++ DQF +T H+E Sbjct: 355 EFQCKELARSGVKKIAAVSCNPLTLARDLATLVEGGYRITKVTPIDQFLWTSHVE 409 >gi|159118344|ref|XP_001709391.1| HpaII tiny fragments locus 9c [Giardia lamblia ATCC 50803] gi|157437507|gb|EDO81717.1| TRMT2A-like protein [Giardia lamblia ATCC 50803] Length = 705 Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust. Identities = 44/181 (24%), Positives = 82/181 (45%), Gaps = 38/181 (20%) Query: 212 DLLELYCGNGNFSLVLAR------------HFDRVLAVEIAKPSVEAARYNIAANHVNNV 259 +LL++ CG+G LA+ H + + ++ ++ ++ A +N + N +N Sbjct: 517 ELLDICCGSGVIGQCLAQVVLKKMINVQNLHVN-IKGLDCSQNAIWNAEFNASENFKDNP 575 Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPH 317 I + +A + F+ I I +DPPR+G+ + + ++ + Sbjct: 576 NISAL--YICGKAEQTPEYFSGSAKIGI---------LDPPRTGVFQSVLTAIRHSTLEY 624 Query: 318 ILYISCNPDSLCR---DLSILSTTHT---------IERLALFDQFPYTRHMECGVLLVRK 365 ++YISCNP ++ + DLSI+ST +E L F+ FP H+E +L R Sbjct: 625 LIYISCNPKTMSQNIIDLSIVSTDSDLSKRTAPFYVESLVGFNMFPGCEHVETVAILHRC 684 Query: 366 P 366 P Sbjct: 685 P 685 >gi|241762027|ref|ZP_04760111.1| (Uracil-5)-methyltransferase [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|241373493|gb|EER63080.1| (Uracil-5)-methyltransferase [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 397 Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust. Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 2/69 (2%) Query: 291 RFKTIFVDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDL-SILSTTHTIERLALFD 348 RF+ I +DPPR+G + + + I+Y+SCNP + RD ++L + + Sbjct: 321 RFECIILDPPRAGAKEQIANLAILPNGRIVYVSCNPATFARDAKTLLEAGWVLHWVKPVG 380 Query: 349 QFPYTRHME 357 QFP++ H+E Sbjct: 381 QFPWSLHVE 389 >gi|85717530|ref|ZP_01048475.1| possible hypothetical RNA methyltransferase [Nitrobacter sp. Nb-311A] gi|85695647|gb|EAQ33560.1| possible hypothetical RNA methyltransferase [Nitrobacter sp. Nb-311A] Length = 435 Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust. Identities = 42/153 (27%), Positives = 73/153 (47%), Gaps = 15/153 (9%) Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274 +L+CG G F+L LA RV A + + A AA+ + +K +R +++ R Sbjct: 295 DLFCGVGPFALRLAVRA-RVAAFD--SNAAAVAALQKAADTASGLKPIRAETRDL---FR 348 Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA-YPHILYISCNPDSLCRDLS 333 R L+DID + DPPR G + + + + P I+ +SC+ + RD Sbjct: 349 RPLVAQELRDID-------AVIFDPPRQGAEAQSKHLAASRIPVIVAVSCSAATFTRDAR 401 Query: 334 IL-STTHTIERLALFDQFPYTRHMECGVLLVRK 365 +L +++E + DQF ++ H+E VR+ Sbjct: 402 VLIDGGYSLETVTPVDQFRHSPHVELVAKFVRR 434 >gi|332559676|ref|ZP_08413998.1| RNA SAM-dependent methyltransferase [Rhodobacter sphaeroides WS8N] gi|332277388|gb|EGJ22703.1| RNA SAM-dependent methyltransferase [Rhodobacter sphaeroides WS8N] Length = 404 Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust. Identities = 39/147 (26%), Positives = 73/147 (49%), Gaps = 15/147 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + +L+ G G FSL LA + V AVE + A + +K V + +++ Sbjct: 262 VTDLFAGAGTFSLPLAAGAE-VHAVE--GDAAMMAALDRGWRQAPGLKRVTVETRDL--- 315 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA-YPHILYISCNPDSLCRD 331 RR E + L+ R + + +DPPR+G + + +A P + ++SCNP + RD Sbjct: 316 FRRPLEPDELR-------RTEAVVIDPPRAGAEAQARALARAAVPVVAFVSCNPVTFARD 368 Query: 332 -LSILSTTHTIERLALFDQFPYTRHME 357 L ++ + ++ + + DQF ++ H+E Sbjct: 369 ALILMRGGYRLDWVQVVDQFRWSSHVE 395 >gi|4511979|gb|AAD21539.1| RNA methyltransferase [Zymomonas mobilis subsp. mobilis ZM4] Length = 397 Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust. Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 2/69 (2%) Query: 291 RFKTIFVDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDL-SILSTTHTIERLALFD 348 RF+ I +DPPR+G + + + I+Y+SCNP + RD ++L + + Sbjct: 321 RFECIILDPPRAGAKEQIANLAILPNGRIVYVSCNPATFARDAKTLLEAGWVLHWVKPVG 380 Query: 349 QFPYTRHME 357 QFP++ H+E Sbjct: 381 QFPWSLHVE 389 >gi|59803122|sp|Q9X3W2|Y1179_ZYMMO RecName: Full=Uncharacterized RNA methyltransferase ZMO1179 Length = 397 Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust. Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 2/69 (2%) Query: 291 RFKTIFVDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDL-SILSTTHTIERLALFD 348 RF+ I +DPPR+G + + + I+Y+SCNP + RD ++L + + Sbjct: 321 RFECIILDPPRAGAKEQIANLAILPNGRIVYVSCNPATFARDAKTLLEAGWVLHWVKPVG 380 Query: 349 QFPYTRHME 357 QFP++ H+E Sbjct: 381 QFPWSLHVE 389 >gi|255325118|ref|ZP_05366224.1| TRAM domain protein [Corynebacterium tuberculostearicum SK141] gi|255297683|gb|EET76994.1| TRAM domain protein [Corynebacterium tuberculostearicum SK141] Length = 407 Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust. Identities = 23/85 (27%), Positives = 45/85 (52%), Gaps = 3/85 (3%) Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGL-DDATVGMVQAYPH-ILYISCNPDSLCRDLS 333 E + +++ + + + +DPPR+G +D + A P ++++ C+P + RDL Sbjct: 315 EVKSAKVEQVAAQLPKPGAVVLDPPRTGAGEDVIRSVAAAAPQTVVHVGCDPATFARDLG 374 Query: 334 ILST-THTIERLALFDQFPYTRHME 357 + + IE++AL + FP T H E Sbjct: 375 YWNQHGYGIEKMALINAFPGTHHFE 399 >gi|224418311|ref|ZP_03656317.1| tRNA (uracil-5-)-methyltransferase [Helicobacter canadensis MIT 98-5491] Length = 145 Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust. Identities = 40/142 (28%), Positives = 66/142 (46%), Gaps = 23/142 (16%) Query: 11 EQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKER 70 E L KVD +Q++ + I +R R E I+ D + + M ++ K+ Sbjct: 17 ECSLESKVDYAKQLL---GINQCDIVSLRQDSFRARCELGIFFKDDKINYAM--RKGKQF 71 Query: 71 MRID----------YFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVT 120 + I+ F+P +L L E R KLF I+ L++Q+D+ ++T Sbjct: 72 VCIENCCNLLESLQKFLP--VLKKKLNQEFFKD------FRQKLFAIEVLSTQNDEILLT 123 Query: 121 LIYHRLLDDAWRECAIRLRDAL 142 LIYH+ L++ W E A L+ AL Sbjct: 124 LIYHKKLNETWLENAKELKKAL 145 >gi|283856417|ref|YP_162914.2| (Uracil-5)-methyltransferase [Zymomonas mobilis subsp. mobilis ZM4] gi|283775417|gb|AAV89803.2| (Uracil-5)-methyltransferase [Zymomonas mobilis subsp. mobilis ZM4] Length = 384 Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust. Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 2/69 (2%) Query: 291 RFKTIFVDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDL-SILSTTHTIERLALFD 348 RF+ I +DPPR+G + + + I+Y+SCNP + RD ++L + + Sbjct: 308 RFECIILDPPRAGAKEQIANLAILPNGRIVYVSCNPATFARDAKTLLEAGWVLHWVKPVG 367 Query: 349 QFPYTRHME 357 QFP++ H+E Sbjct: 368 QFPWSLHVE 376 >gi|319441605|ref|ZP_07990761.1| putative SAM-dependent methyltransferase [Corynebacterium variabile DSM 44702] Length = 446 Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust. Identities = 39/148 (26%), Positives = 61/148 (41%), Gaps = 21/148 (14%) Query: 215 ELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +LY G+G FS L +V V++A + A +A +V+ V Sbjct: 305 DLYGGSGVFSAALTAALPGAQVDCVDVASEATAAGEQALADR---DVRFVAGDVASHIAE 361 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330 +R R + +DPPR+G D + V A+ H+L+I C+P + R Sbjct: 362 LRGGR-------------GLAAVVLDPPRTGAGDRVLEEVAAHRPAHVLHIGCDPATAAR 408 Query: 331 DLSIL-STTHTIERLALFDQFPYTRHME 357 D + L S + L D F T H+E Sbjct: 409 DAATLASAGYRPVSLTAVDAFGLTHHVE 436 >gi|68073839|ref|XP_678834.1| SAM-dependent methyltransferase related to tRNA(uracyl-5-)-methyltransferase [Plasmodium berghei strain ANKA] gi|56499427|emb|CAI04980.1| SAM-dependent methyltransferase related to tRNA(uracyl-5-)-methyltransferase, putative [Plasmodium berghei] Length = 673 Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust. Identities = 41/178 (23%), Positives = 80/178 (44%), Gaps = 21/178 (11%) Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLI---GRANKTK 159 K I Y S S+ I+ L + ++ I + + L + I+ I NK K Sbjct: 353 KSVDIKYSVSNSENQILINFIGCTLTNEAKKNMINIANNLAIKNKSIKGILYNVETNKLK 412 Query: 160 ICLDRDYVDERLTVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQG 211 + + +T+ G+ IY N +F QPN +N +++ V + + Sbjct: 413 ------QIKKEITLFGQNYIYHTYNNYTYKLGANTFFQPNQYLNECIIQIVFKLIQNYKS 466 Query: 212 D----LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265 + +L+CG G +SL L+ F+ V++V+ + +++ NI N++ NVK + ++ Sbjct: 467 SQTQCVFDLFCGIGFYSLPLSSMFNHVISVDYSIENIKNLEENIKLNNIQNVKPIHIN 524 >gi|304393473|ref|ZP_07375401.1| RNA methyltransferase [Ahrensia sp. R2A130] gi|303294480|gb|EFL88852.1| RNA methyltransferase [Ahrensia sp. R2A130] Length = 417 Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust. Identities = 39/153 (25%), Positives = 70/153 (45%), Gaps = 19/153 (12%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + +L+ G G F+ L+ A V A ++AA VK + + ++ +A Sbjct: 268 VADLFSGLGTFTFPLS-----------ANSKVHAVESDVAA-----VKALHYAQRDGGKA 311 Query: 273 MRRE-REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA-YPHILYISCNPDSLCR 330 + E R+ L + + + +DPPR+G + + + I YISCNP + R Sbjct: 312 VTSEIRDLIELPLMPKELEAYDGVCLDPPRAGAAEQIAEIARTDIRRIAYISCNPVTQAR 371 Query: 331 DLSILSTTH-TIERLALFDQFPYTRHMECGVLL 362 D+++L +I + DQF ++ H+E LL Sbjct: 372 DVAVLVKAGWSIASITPVDQFVFSPHIESVALL 404 >gi|67603988|ref|XP_666584.1| hypothetical protein [Cryptosporidium hominis TU502] gi|54657609|gb|EAL36357.1| hypothetical protein Chro.20288 [Cryptosporidium hominis] Length = 354 Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust. Identities = 44/177 (24%), Positives = 74/177 (41%), Gaps = 35/177 (19%) Query: 213 LLELYCGNGNFSLVL-------ARHFDRV--LAVEIAKPSVEAARYNIAANHVNNVKIVR 263 +L++ CG G L L R+F V + ++ ++ ++ +A+ N + N K Sbjct: 162 ILDICCGVGAIGLTLLDIFRDLGRNFGDVELIGIDCSREAINSAKKNAENIGIENAKYYT 221 Query: 264 MSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHI---LY 320 +++ N L VDPPRSGL + + ++ I +Y Sbjct: 222 GTAESILPNFLENLPSNNLV----------IAIVDPPRSGLHSSVIKSLRKMAKIEYLIY 271 Query: 321 ISCNPDSL---CRDLSILSTTHT--IERLALF--------DQFPYTRHMECGVLLVR 364 +SCN +SL C +L HT E +F D FP+T+H+E + L R Sbjct: 272 VSCNVESLVKNCIELCSAYDPHTDQQEYFPVFFPECAVPVDMFPFTKHVETILYLKR 328 >gi|309357517|emb|CAP35435.2| hypothetical protein CBG_17893 [Caenorhabditis briggsae AF16] Length = 619 Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust. Identities = 36/163 (22%), Positives = 73/163 (44%), Gaps = 23/163 (14%) Query: 213 LLELYCGNGNFSLVLARHFDRV-----LAVEIAKPSVEAARYNIAANHVNNV-KIVRMSS 266 LL++ CG G L ++ + + +E+ +VE A+ N N + K + + Sbjct: 455 LLDICCGTGTIGQCLLKNIENTQKVFCVGIEMITEAVEDAKQNAKQNKMEKCCKYIAGKA 514 Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP---HILYISC 323 ++ ++M+ + D+ + R + +DPPR+G+ + + + ++++SC Sbjct: 515 EDTFRSMK----YQLPAGFDLRTSRVVGV-LDPPRAGMHEKVILACREMSTMRRLIFVSC 569 Query: 324 NPDS-------LCRDLS--ILSTTHTIERLALFDQFPYTRHME 357 P++ LCR S ++ R+ D FP T HME Sbjct: 570 EPNAAINNIVNLCRPESRKYSGDAFSVTRVQPVDMFPQTNHME 612 >gi|296005341|ref|XP_002808999.1| SAM dependent methyltransferase, putative [Plasmodium falciparum 3D7] gi|225631935|emb|CAX64280.1| SAM dependent methyltransferase, putative [Plasmodium falciparum 3D7] Length = 800 Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust. Identities = 37/155 (23%), Positives = 76/155 (49%), Gaps = 19/155 (12%) Query: 179 IYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-----LLELYCGNGNFSLVLARHFDR 233 IY+ N+F QPN +N +++ + + + + L +L+CG G +S+ LA FD Sbjct: 472 IYKLGANTFFQPNQYLNQYIIRIISKIIEKYKINSSNTCLYDLFCGIGFYSIPLANLFDH 531 Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293 V++++ + ++++ NI N + N++ ++M F Q LK I++H R+ Sbjct: 532 VISIDYSIDNIKSLEENINLNKIKNIRCIQMDL--FNQH--------NLKQINLHIRRYI 581 Query: 294 TIFVDPPRSGLDDATVGMVQAYPHILYISCNPDSL 328 V + L D ++ Y + +I N +++ Sbjct: 582 VNTVKEKKIDLYDK----IKEYIRLTFIQTNNENI 612 Score = 41.6 bits (96), Expect = 0.18, Method: Compositional matrix adjust. Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 3/71 (4%) Query: 295 IFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFP 351 I V+PPR G ++ HI+Y+SCN S +D+S +++ + I+ + D FP Sbjct: 699 IIVNPPRKGCGKVFRRWIRGLCCKHIIYVSCNVHSQFKDISHLINLGYIIKDIIPLDTFP 758 Query: 352 YTRHMECGVLL 362 T H E V L Sbjct: 759 RTPHFETIVYL 769 >gi|26324958|dbj|BAC26233.1| unnamed protein product [Mus musculus] Length = 493 Score = 46.2 bits (108), Expect = 0.008, Method: Compositional matrix adjust. Identities = 45/197 (22%), Positives = 80/197 (40%), Gaps = 28/197 (14%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 ++F Q N ML ++ G+ + LL++ CG G L +A+ +V +E+ + Sbjct: 308 DAFFQINTA-GAEMLYRIIGELSGVNSESLLLDICCGTGVIGLSVAQRASQVHGIELVEQ 366 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302 +VE AR+ A N V N + ++ + + ++ +L V+P R+ Sbjct: 367 AVEDARWTAAFNGVTNCEFHAGRAETILPQLLKSQKDEKL----------TVAVVNPARA 416 Query: 303 GLDDATVGMVQAYPHI---LYISCNPDS--------LC----RDLSILSTTHTIERLALF 347 GL V ++ I +++SC P LC +L + Sbjct: 417 GLHYRVVRAIRNCRTIHTLVFVSCKPHGESTRNFIELCCPPNSAKQLLGDPFVLREAVPV 476 Query: 348 DQFPYTRHMECGVLLVR 364 D FP+T H E +L R Sbjct: 477 DLFPHTPHCELVLLFTR 493 >gi|269784754|ref|NP_766128.2| tRNA (uracil-5-)-methyltransferase homolog isoform a [Mus musculus] gi|269784756|ref|NP_001161466.1| tRNA (uracil-5-)-methyltransferase homolog isoform a [Mus musculus] gi|81897080|sp|Q8BQJ6|TRM2_MOUSE RecName: Full=tRNA (uracil-5-)-methyltransferase homolog; AltName: Full=TRM2 homolog gi|26340260|dbj|BAC33793.1| unnamed protein product [Mus musculus] gi|34784571|gb|AAH56937.1| Trmt2b protein [Mus musculus] gi|123220830|emb|CAM15919.1| novel protein [Mus musculus] Length = 493 Score = 46.2 bits (108), Expect = 0.008, Method: Compositional matrix adjust. Identities = 45/197 (22%), Positives = 80/197 (40%), Gaps = 28/197 (14%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 ++F Q N ML ++ G+ + LL++ CG G L +A+ +V +E+ + Sbjct: 308 DAFFQINTA-GAEMLYRIIGELSGVNSESLLLDICCGTGVIGLSVAQRASQVHGIELVEQ 366 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302 +VE AR+ A N V N + ++ + + ++ +L V+P R+ Sbjct: 367 AVEDARWTAAFNGVTNCEFHAGRAETILPQLLKSQKDEKL----------TVAVVNPARA 416 Query: 303 GLDDATVGMVQAYPHI---LYISCNPDS--------LC----RDLSILSTTHTIERLALF 347 GL V ++ I +++SC P LC +L + Sbjct: 417 GLHYRVVRAIRNCRTIHTLVFVSCKPHGESTRNFIELCCPPNSAKQLLGDPFVLREAVPV 476 Query: 348 DQFPYTRHMECGVLLVR 364 D FP+T H E +L R Sbjct: 477 DLFPHTPHCELVLLFTR 493 >gi|221060771|ref|XP_002261955.1| hypothetical protein, conserved in Plasmodium species [Plasmodium knowlesi strain H] gi|193811105|emb|CAQ41833.1| hypothetical protein, conserved in Plasmodium species [Plasmodium knowlesi strain H] Length = 751 Score = 46.2 bits (108), Expect = 0.008, Method: Compositional matrix adjust. Identities = 28/99 (28%), Positives = 53/99 (53%), Gaps = 7/99 (7%) Query: 172 TVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGI-----QGDLLELYCGNGNFSLV 226 + G T Y+ N+F QPN +N +++ +L K Q + +L+CG G +SL Sbjct: 420 SCGGYT--YKLGANTFFQPNQYLNECIVQIILKLVKNYKINAKQACVYDLFCGIGFYSLP 477 Query: 227 LARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265 L+ F +V++V+ + +++ N+ N+V NVK ++ Sbjct: 478 LSDLFGQVISVDYSIDNIKNLEENVKMNNVKNVKCFNLN 516 Score = 40.8 bits (94), Expect = 0.31, Method: Compositional matrix adjust. Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 7/73 (9%) Query: 295 IFVDPPRSGLDDA----TVGMVQAYPHILYISCNPDSLCRDLSILST-THTIERLALFDQ 349 + ++PPR G + G+ Y I+YISCN +S RD++ L+ + ++ + D Sbjct: 650 VIINPPRKGCEKVFRRWLRGLCCRY--IIYISCNANSQFRDINHLTNLGYVVKEIIPLDT 707 Query: 350 FPYTRHMECGVLL 362 FP T H E LL Sbjct: 708 FPRTPHFETVALL 720 >gi|317498214|ref|ZP_07956513.1| rumA protein [Lachnospiraceae bacterium 5_1_63FAA] gi|316894423|gb|EFV16606.1| rumA protein [Lachnospiraceae bacterium 5_1_63FAA] Length = 51 Score = 46.2 bits (108), Expect = 0.008, Method: Composition-based stats. Identities = 22/49 (44%), Positives = 30/49 (61%), Gaps = 1/49 (2%) Query: 318 ILYISCNPDSLCRDLSILSTT-HTIERLALFDQFPYTRHMECGVLLVRK 365 ++YISC P SL RDL + + ++R DQFP T H+E VLL R+ Sbjct: 1 MVYISCKPTSLARDLEVFEAAGYKVKRATAVDQFPNTVHVETCVLLQRR 49 >gi|289614485|emb|CBI58769.1| unnamed protein product [Sordaria macrospora] Length = 666 Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust. Identities = 51/222 (22%), Positives = 93/222 (41%), Gaps = 45/222 (20%) Query: 178 LIYRQIENSFTQPNAGI--------NVHMLEWVLAATKGIQG--DLLELYCGNGNFSLVL 227 I++ SF Q N I H+L + +G + +L++ Y G+G F++ Sbjct: 452 FIFQNPAGSFFQNNNSILSPFTDHIRQHILPPPGSLPEGAKPIKNLIDAYSGSGLFTITQ 511 Query: 228 ARHF-DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDID 286 + F + ++IA S++ AR N N ++ + + A + F + +D Sbjct: 512 SSLFPGGSIGIDIADKSIDFARRNARLNGLDESQCKFI-------AADAPQLFESVSSLD 564 Query: 287 IHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCRDLSILS-------- 336 + +DPPR G D + + ++Q P ++Y+SCN + RD+ +L Sbjct: 565 ADE---TVVVLDPPRKGCDASFLRQLMQFAPRRVVYVSCNVHTQARDVGVLVRGRVGDTF 621 Query: 337 --------------TTHTIERLALFDQFPYTRHMECGVLLVR 364 + + IE + FD FP T H+E +L R Sbjct: 622 GEAFVDPTEGEKKMSRYVIESIRGFDFFPQTGHVEGVAILNR 663 >gi|184201062|ref|YP_001855269.1| putative methyltransferase [Kocuria rhizophila DC2201] gi|183581292|dbj|BAG29763.1| putative methyltransferase [Kocuria rhizophila DC2201] Length = 478 Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust. Identities = 47/166 (28%), Positives = 74/166 (44%), Gaps = 14/166 (8%) Query: 213 LLELYCGNGNFSLVLARHFD---RVLAVEIAKPSVEAARYNIA-ANHVNNVK--IVRMSS 266 + +LY G G F+ V A RV AVE + + A +N+A A HV V+ + R+ + Sbjct: 311 VWDLYSGAGLFTAVAADAVGERGRVFAVEGSPVTSADAAHNLAGAPHVTGVRGDVARVLT 370 Query: 267 KEFTQAMRREREFNRL----KDIDIHSY-RFKTIFVDPPRSGLDDATVGMV-QAYPH-IL 319 R +D + R + +DPPR+G + V QA P I+ Sbjct: 371 GRGGARRGDRRRGGGWAASSRDARTAAPPRPDAVIMDPPRAGAAKEVLAAVDQAGPRRIV 430 Query: 320 YISCNPDS-LCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 Y++C+P + + IE ++ FD +P T H+E LL R Sbjct: 431 YVACDPAALGRDLGRLRRRGWRIEDVSGFDLYPNTHHVEAVALLRR 476 >gi|217976905|ref|YP_002361052.1| putative RNA methyltransferase [Methylocella silvestris BL2] gi|217502281|gb|ACK49690.1| putative RNA methyltransferase [Methylocella silvestris BL2] Length = 422 Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust. Identities = 44/145 (30%), Positives = 67/145 (46%), Gaps = 16/145 (11%) Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274 +L+ G G FSL LA F V AV+ E A + A ++ R + E R Sbjct: 274 DLFAGVGTFSLRLA-EFAAVHAVD-----SEGAALSALAKAAGEARL-RPVTVETRDLFR 326 Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA-YPHILYISCNPDSLCRDLS 333 R L D+ SY I DPPR+G + + + P ++ +SCN S RD + Sbjct: 327 RP-----LSSEDLSSY--DGIVFDPPRAGAPEQARAIAASRAPLVVAVSCNHQSFARDAA 379 Query: 334 IL-STTHTIERLALFDQFPYTRHME 357 L + + +ER+ DQF ++ H+E Sbjct: 380 TLCAGGYELERVLPVDQFRHSPHLE 404 >gi|116205099|ref|XP_001228360.1| hypothetical protein CHGG_10433 [Chaetomium globosum CBS 148.51] gi|88176561|gb|EAQ84029.1| hypothetical protein CHGG_10433 [Chaetomium globosum CBS 148.51] Length = 561 Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust. Identities = 40/169 (23%), Positives = 77/169 (45%), Gaps = 27/169 (15%) Query: 213 LLELYCGNGNFSLVLARHF-DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271 L++ Y G+G F++ + F + ++IA S+ AR N + N + + R + + Q Sbjct: 400 LIDAYSGSGLFTITQSALFPGGSIGIDIADKSITYARRNASLNGLAETQ-CRFIAADAPQ 458 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLC 329 + ++ + + + +DPPR G D + + +++ P ++Y+SCN + Sbjct: 459 LFQSVSAYDPDETV---------VVLDPPRKGCDASFLRQLLRFAPRRVVYVSCNVHTQA 509 Query: 330 RDLSIL--------------STTHTIERLALFDQFPYTRHMECGVLLVR 364 RD+ +L + IE + FD FP T H+E +L R Sbjct: 510 RDVGVLVRGAVEGDKEAGEGGARYEIESIQEFDFFPQTGHVEGVAVLNR 558 >gi|118618652|ref|YP_906984.1| SAM-dependent methyltransferase [Mycobacterium ulcerans Agy99] gi|118570762|gb|ABL05513.1| SAM-dependent methyltransferase [Mycobacterium ulcerans Agy99] Length = 401 Score = 45.8 bits (107), Expect = 0.010, Method: Compositional matrix adjust. Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 3/72 (4%) Query: 296 FVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPY 352 +DPPRSG + ++ +++I C S RDL + + + + +FD FP Sbjct: 330 VLDPPRSGAGREVIDLLADAGVRRVVHIGCEAASFARDLGLYRGHGYGVHAIKVFDAFPL 389 Query: 353 TRHMECGVLLVR 364 T H+EC LL R Sbjct: 390 THHVECVALLTR 401 >gi|289548756|ref|YP_003473744.1| hypothetical protein Thal_0985 [Thermocrinis albus DSM 14484] gi|289182373|gb|ADC89617.1| protein of unknown function Met10 [Thermocrinis albus DSM 14484] Length = 391 Score = 45.8 bits (107), Expect = 0.010, Method: Compositional matrix adjust. Identities = 29/107 (27%), Positives = 56/107 (52%), Gaps = 19/107 (17%) Query: 211 GDL-LELYCGNGNFSLVLARHFDR-VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268 GDL L+L+C G F+L + R + V+AV+I+ P++E + N N+++ + V ++ + Sbjct: 218 GDLCLDLFCHTGGFALNMKRKGAKEVIAVDISAPALETGKKNAQLNNLDGIHWVEDNAFD 277 Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-----RSGLDDATVG 310 F + M +E +F + +DPP ++ L++A G Sbjct: 278 FLRKMHKE------------GNQFDVVVIDPPSFTKTKASLENALRG 312 >gi|118589266|ref|ZP_01546672.1| RNA methyltransferase putative, TrmA family protein [Stappia aggregata IAM 12614] gi|118437966|gb|EAV44601.1| RNA methyltransferase putative, TrmA family protein [Stappia aggregata IAM 12614] Length = 410 Score = 45.8 bits (107), Expect = 0.011, Method: Compositional matrix adjust. Identities = 47/170 (27%), Positives = 76/170 (44%), Gaps = 15/170 (8%) Query: 197 HMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV 256 H L ++ G + +L+ G G F+L L R + V AVE + A ++ A Sbjct: 253 HALSKLVMDGVGKAKTIADLFSGVGTFALRLGRQAN-VHAVE--GDAAALAAFDKALRKP 309 Query: 257 NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD-DATVGMVQAY 315 +K V ++ + RR + L+ D + DPPR+G A + Sbjct: 310 QGLKKVTFERRDLS---RRPLVKDELEPYD-------AVVFDPPRAGAQAQAEQLALSKV 359 Query: 316 PHILYISCNPDSLCRDLSI-LSTTHTIERLALFDQFPYTRHMECGVLLVR 364 I+ +SCNP +L RDL I L + ++ + DQF Y+ H+E +L R Sbjct: 360 KTIVAVSCNPATLARDLRILLDGGYVLQSVTPVDQFHYSPHIEAVAVLTR 409 >gi|227549133|ref|ZP_03979182.1| RNA methyltransferase [Corynebacterium lipophiloflavum DSM 44291] gi|227078801|gb|EEI16764.1| RNA methyltransferase [Corynebacterium lipophiloflavum DSM 44291] Length = 410 Score = 45.8 bits (107), Expect = 0.011, Method: Compositional matrix adjust. Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 3/66 (4%) Query: 295 IFVDPPRSGLDDATVGMVQ-AYPH-ILYISCNPDSLCRDLSILST-THTIERLALFDQFP 351 + +DPPRSG + V V A P I+++ C+P + RDL + + R+ L D FP Sbjct: 332 VVLDPPRSGAGEDVVRRVAGAAPERIIHVGCDPATFARDLGYWAAHGFGVRRMVLIDAFP 391 Query: 352 YTRHME 357 T H E Sbjct: 392 NTHHFE 397 >gi|30267784|gb|AAP21765.1| Trm2p [Saccharomyces cerevisiae] Length = 77 Score = 45.8 bits (107), Expect = 0.012, Method: Composition-based stats. Identities = 25/68 (36%), Positives = 35/68 (51%), Gaps = 8/68 (11%) Query: 294 TIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSIL------STTHTIERLA 345 ++ +DPPR G D+ + + AY I+YISCN S RD+ + H IE + Sbjct: 9 SVILDPPRKGCDELFLKQLAAYNPAKIIYISCNVHSQARDVEYFLKETENGSAHQIESIR 68 Query: 346 LFDQFPYT 353 FD FP T Sbjct: 69 GFDFFPQT 76 >gi|33321937|gb|AAQ06688.1|AF496029_1 trma family RNA methyltransferase [Lactobacillus delbrueckii subsp. lactis] Length = 92 Score = 45.8 bits (107), Expect = 0.012, Method: Composition-based stats. Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 3/74 (4%) Query: 295 IFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCRDLSILSTTHTIERLALFDQFPY 352 + DPPR+GL + + +++ P +YISCNP +L +DL +L + + + D P Sbjct: 19 LIXDPPRTGLAKSLIKTLLRVKPASFVYISCNPSTLAQDLVLLGEAYDVRVIENVDMLPQ 78 Query: 353 TRHMEC-GVLLVRK 365 T EC L +RK Sbjct: 79 TPRCECIAKLTLRK 92 >gi|148253962|ref|YP_001238547.1| putative RNA methyltransferase [Bradyrhizobium sp. BTAi1] gi|146406135|gb|ABQ34641.1| 23S rRNA m(5)U-1939 methyltransferase [Bradyrhizobium sp. BTAi1] Length = 411 Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust. Identities = 43/154 (27%), Positives = 71/154 (46%), Gaps = 16/154 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + +L+CG G F+L LA RV A++ S+ A + A +K ++ +++ Sbjct: 272 VADLFCGVGPFALRLAARA-RVTAMDNDAGSIAALQK---AAGCPGLKPIKAEARDL--- 324 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA-YPHILYISCNPDSLCRD 331 RR L+DID + DPPR G + + P I+ +SCN + RD Sbjct: 325 FRRPLMPAELRDID-------AVVFDPPRQGAQAQAKQLAASKVPVIVAVSCNVTTFARD 377 Query: 332 LSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364 + +L + +E + DQF +T H+E L R Sbjct: 378 MRLLIDGGYKLETVVPVDQFRHTPHVELVARLAR 411 >gi|126463623|ref|YP_001044737.1| RNA SAM-dependent methyltransferase [Rhodobacter sphaeroides ATCC 17029] gi|126105287|gb|ABN77965.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Rhodobacter sphaeroides ATCC 17029] Length = 404 Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust. Identities = 38/147 (25%), Positives = 73/147 (49%), Gaps = 15/147 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + +L+ G G F+L LA + V AVE + A + +K V + +++ Sbjct: 262 VTDLFAGAGTFTLPLAAGAE-VHAVE--GDAAMMAALDRGWRQAPGLKRVTVETRDL--- 315 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA-YPHILYISCNPDSLCRD 331 RR E + L+ R + + +DPPR+G + + +A P + ++SCNP + RD Sbjct: 316 FRRPLEPDELR-------RTEAVVIDPPRAGAEAQARALARAAVPVVAFVSCNPVTFARD 368 Query: 332 -LSILSTTHTIERLALFDQFPYTRHME 357 L ++ + ++ + + DQF ++ H+E Sbjct: 369 ALILMRGGYRLDWVQVVDQFRWSSHVE 395 >gi|30683900|ref|NP_180412.2| zinc finger (CCCH-type) family protein [Arabidopsis thaliana] gi|75154217|sp|Q8L7S3|C3H24_ARATH RecName: Full=Zinc finger CCCH domain-containing protein 24; Short=AtC3H24 gi|22135822|gb|AAM91097.1| At2g28450/T1B3.3 [Arabidopsis thaliana] gi|25090447|gb|AAN72304.1| At2g28450/T1B3.3 [Arabidopsis thaliana] gi|330253030|gb|AEC08124.1| zinc finger CCCH domain-containing protein 24 [Arabidopsis thaliana] Length = 809 Score = 45.4 bits (106), Expect = 0.013, Method: Compositional matrix adjust. Identities = 39/177 (22%), Positives = 67/177 (37%), Gaps = 61/177 (34%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK------------ 260 L ++ CG G L LA V+ +E+ +V A N N ++N K Sbjct: 561 LFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVADAERNATINGISNCKFICSKAEDVMSS 620 Query: 261 -------IVRM------------------SSKEFTQAM-------------------RRE 276 + +M S++E T + + Sbjct: 621 LLKQYLDVTQMEEAKPLSNANDDLNKQIPSTEEMTNSEHVADQNLPPSNTQVEELQDNEQ 680 Query: 277 REFNRLKDIDIHSYRFKTI--FVDPPRSGLDDATVGMVQAYP---HILYISCNPDSL 328 ++ + L+ +FK + VDPPRSGL A + ++ +P ++YISCNP++L Sbjct: 681 KDSSSLEPEKTTKPQFKNVVAIVDPPRSGLHPAVIKALRTHPRLKRLVYISCNPETL 737 >gi|114706810|ref|ZP_01439710.1| putative rna methyltransferase protein [Fulvimarina pelagi HTCC2506] gi|114537758|gb|EAU40882.1| putative rna methyltransferase protein [Fulvimarina pelagi HTCC2506] Length = 412 Score = 45.4 bits (106), Expect = 0.013, Method: Compositional matrix adjust. Identities = 43/152 (28%), Positives = 65/152 (42%), Gaps = 15/152 (9%) Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274 +L+ G+G F+L LA+ +V AVE EA ++ + E R Sbjct: 272 DLFAGSGAFTLRLAKG-AKVHAVE-----SEAGALAALDAAARQASGLKPITHERRDLYR 325 Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA-YPHILYISCNPDSLCRDLS 333 R LK D + DPPR+G + + + I +SCNP +L RDL Sbjct: 326 RPLTVKDLKPYD-------GVVFDPPRAGAEGVAQALAASTVKRIAAVSCNPQTLGRDLR 378 Query: 334 IL-STTHTIERLALFDQFPYTRHMECGVLLVR 364 IL ++ + DQF ++ H+E LL R Sbjct: 379 ILIDGGFQLKSVTPIDQFLWSHHVEAVALLER 410 >gi|262202192|ref|YP_003273400.1| SAM-dependent methyltransferase [Gordonia bronchialis DSM 43247] gi|262085539|gb|ACY21507.1| SAM-dependent methyltransferase related to tRNA (uracil-5-)-methyltransferase-like protein [Gordonia bronchialis DSM 43247] Length = 443 Score = 45.4 bits (106), Expect = 0.013, Method: Compositional matrix adjust. Identities = 27/74 (36%), Positives = 38/74 (51%), Gaps = 3/74 (4%) Query: 295 IFVDPPRSGLDDATVGMVQ-AYPH-ILYISCNPDSLCRDLSILST-THTIERLALFDQFP 351 + +DPPR+G + V + A P I++I C+ RDL + T + I L FD FP Sbjct: 370 VVLDPPRTGAGEKVVTAISDARPQVIIHIGCDAARFARDLGLFVTHGYRIAELRGFDAFP 429 Query: 352 YTRHMECGVLLVRK 365 T H+E LVR Sbjct: 430 LTHHVEVIACLVRG 443 >gi|182678785|ref|YP_001832931.1| putative RNA methyltransferase [Beijerinckia indica subsp. indica ATCC 9039] gi|182634668|gb|ACB95442.1| putative RNA methyltransferase [Beijerinckia indica subsp. indica ATCC 9039] Length = 430 Score = 45.4 bits (106), Expect = 0.013, Method: Compositional matrix adjust. Identities = 47/184 (25%), Positives = 81/184 (44%), Gaps = 18/184 (9%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 +F Q + V+AA G + + +L+ G G FSL LA +V A ++ + + Sbjct: 254 GAFLQATEAGEAALASRVVAALAGRR-KIADLFAGLGTFSLPLAES-AQVHAFDLEQAPL 311 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 A A+H + V + ++ F R ++ Y I DPPR+G Sbjct: 312 TAL---AKASHAPGLHPVEVERRDL---------FRRPLATELAGY--DAIVFDPPRAGA 357 Query: 305 DD-ATVGMVQAYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLL 362 + A P ++ +SCNP + RD SIL + + + + DQF ++ H+E + Sbjct: 358 EQQARALAASVVPVVVAVSCNPQTFARDASILRAGGYDLREVTPIDQFRHSPHVELIGVF 417 Query: 363 VRKP 366 R+P Sbjct: 418 ERQP 421 >gi|94971793|ref|YP_593841.1| SAM-dependent methyltransferase [Candidatus Koribacter versatilis Ellin345] gi|94553843|gb|ABF43767.1| SAM-dependent methyltransferase [Candidatus Koribacter versatilis Ellin345] Length = 405 Score = 45.4 bits (106), Expect = 0.014, Method: Compositional matrix adjust. Identities = 30/101 (29%), Positives = 50/101 (49%), Gaps = 13/101 (12%) Query: 200 EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259 E AA + +GD L+++ G F+L L ++ RV V++++P++E A N N N Sbjct: 224 ENYAAAAQYARGDALDVFTYQGGFALHLYQNCRRVTGVDMSRPALEVAEENATLNEYN-- 281 Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300 E+ +A F+ LKD + + TI +DPP Sbjct: 282 -------LEWIEA----NAFDYLKDQSVGGRAYDTIVLDPP 311 >gi|253744396|gb|EET00610.1| HpaII tiny fragments locus 9c [Giardia intestinalis ATCC 50581] Length = 707 Score = 45.4 bits (106), Expect = 0.015, Method: Compositional matrix adjust. Identities = 43/180 (23%), Positives = 80/180 (44%), Gaps = 36/180 (20%) Query: 212 DLLELYCGNGNFS-----LVLARHFD------RVLAVEIAKPSVEAARYNIAANHVNNVK 260 +LL++ CG+G +VL + D + ++ ++ ++ A +N + N +N Sbjct: 516 ELLDICCGSGVIGQCLAQIVLKKMIDFHDLHVNIKGIDCSQDAIWNADFNASENFKDNPN 575 Query: 261 IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHI 318 I + +A + F+ I I +DPPR+G+ + ++ ++ Sbjct: 576 ISAL--YVCGKAEQTPEYFSGSAKIGI---------LDPPRTGVFQNVLTAIRYSTLEYL 624 Query: 319 LYISCNPDSLCR---DLSILS---------TTHTIERLALFDQFPYTRHMECGVLLVRKP 366 +YISCNP ++ + DLSI+S +E L F+ FP H+E +L R P Sbjct: 625 IYISCNPKTMSQNIIDLSIVSVDPDASKRTAPFYVESLVGFNMFPGCEHVEAVAILHRCP 684 >gi|84514895|ref|ZP_01002258.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Loktanella vestfoldensis SKA53] gi|84511054|gb|EAQ07508.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Loktanella vestfoldensis SKA53] Length = 400 Score = 45.4 bits (106), Expect = 0.015, Method: Compositional matrix adjust. Identities = 45/183 (24%), Positives = 78/183 (42%), Gaps = 16/183 (8%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 +F Q +L V A T+G +++L+ G G F+L LA + V AVE + Sbjct: 232 GAFLQATKQGEAALLAAVDAITQGAS-RIVDLFAGCGTFTLPLAARAE-VHAVESETAML 289 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 A A + +R + E RR E + + ++ +DPPR+G Sbjct: 290 AALDRGWRAG-----RTLRKVTTEARDLFRRPLEPDEIA-------KYDAAVIDPPRAGA 337 Query: 305 DDATVGMVQA-YPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLL 362 + + ++ I+ +SCNP + RD +L + + + DQF ++ H+E Sbjct: 338 EAQIDALARSDIKTIVMVSCNPVTFARDAKVLVDAGFAMPWVQVVDQFRWSPHVEIVSPF 397 Query: 363 VRK 365 RK Sbjct: 398 TRK 400 >gi|190890623|ref|YP_001977165.1| 23S rRNA (uracil-5-)-methyltransferase [Rhizobium etli CIAT 652] gi|190695902|gb|ACE89987.1| 23S rRNA (uracil-5-)-methyltransferase protein [Rhizobium etli CIAT 652] Length = 416 Score = 45.4 bits (106), Expect = 0.015, Method: Compositional matrix adjust. Identities = 52/175 (29%), Positives = 77/175 (44%), Gaps = 16/175 (9%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 F Q M E VLA G + +L+ G G FS+ LAR RV AVE + Sbjct: 249 GGFAQATKPAEEAMAELVLAHV-GKAKRIADLFAGAGTFSVRLAR-IGRVHAVEAE--AA 304 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 A + AA +K V + ++ + +EF + + DPPR+G Sbjct: 305 ALAALDQAARKTQGLKPVSVEKRDLFRRPVMTQEFKP----------YDAVVFDPPRAGA 354 Query: 305 DDATVGMVQ-AYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHME 357 + + + A I +SCNP +L RDL+IL + I + DQF +T H+E Sbjct: 355 EFQCKELARSAVKKIAAVSCNPLTLARDLAILVEGGYRITGVTPIDQFLWTSHVE 409 >gi|329767393|ref|ZP_08258918.1| hypothetical protein HMPREF0428_00615 [Gemella haemolysans M341] gi|328836082|gb|EGF85773.1| hypothetical protein HMPREF0428_00615 [Gemella haemolysans M341] Length = 171 Score = 45.4 bits (106), Expect = 0.015, Method: Compositional matrix adjust. Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 11/81 (13%) Query: 291 RFKTIFVDPPRSGLDD------ATVGMVQAYPHILYISCNPDSLCRDLSIL-STTHTIER 343 + + VD PR G ++ A++G+ + I+Y+SCNP +L RD+ I+ + + Sbjct: 2 KLDAVIVDSPRKGCEESFLRDLASMGIEK----IVYVSCNPATLARDMEIMRGLGYKLGA 57 Query: 344 LALFDQFPYTRHMECGVLLVR 364 + D FP T H+E LL + Sbjct: 58 VQPVDMFPGTYHVETLALLSK 78 >gi|149197919|ref|ZP_01874968.1| RNA methyltransferase [Lentisphaera araneosa HTCC2155] gi|149139140|gb|EDM27544.1| RNA methyltransferase [Lentisphaera araneosa HTCC2155] Length = 399 Score = 45.4 bits (106), Expect = 0.015, Method: Compositional matrix adjust. Identities = 43/181 (23%), Positives = 82/181 (45%), Gaps = 14/181 (7%) Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 F+Q N + M+E K + D LL+LYCG G FS L + VL E++ ++ Sbjct: 227 GFSQVNESMVPEMVELAKTMLKASKDDVLLDLYCGYGLFSHTLGQSCKNVLGYEMSTTAI 286 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 ++A+ I+ ++ ++ + K A +F++ K ++ + +DPPR G Sbjct: 287 DSAK-EISKRLKSHNRMKFFAEK--IDANLVHNKFSQAKQTEL-------MLLDPPRQGC 336 Query: 305 DDATVG-MVQAYPH-ILYISCNPDSLCRD-LSILSTTHTIERLALFDQFPYTRHMECGVL 361 + + + + P +L I C D + ++ L + + + D F T ++E VL Sbjct: 337 EPGVIAQLAKRRPKRVLQIFCGTDVVPKEILEWQKQGYKAKVIQPIDMFAGTPNLETMVL 396 Query: 362 L 362 Sbjct: 397 F 397 >gi|167823861|ref|ZP_02455332.1| 23S rRNA 5-methyluridine methyltransferase [Burkholderia pseudomallei 9] Length = 84 Score = 45.1 bits (105), Expect = 0.016, Method: Composition-based stats. Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 10/83 (12%) Query: 292 FKTIFVDPPRSG---LDDATVGMVQ--AYP---HILYISCNPDSLCRDLSIL--STTHTI 341 F VDPPR G + A + Q A P I+Y+SCNP +L RD +L + + Sbjct: 1 FDKFLVDPPREGALAVSKALAEIAQSGAGPLPTRIVYVSCNPSTLARDAGLLVHEAGYRL 60 Query: 342 ERLALFDQFPYTRHMECGVLLVR 364 + + + FP+T H+E L R Sbjct: 61 KGAGVVNMFPHTSHVESIALFER 83 >gi|298707385|emb|CBJ30020.1| conserved unknown protein [Ectocarpus siliculosus] Length = 516 Score = 45.1 bits (105), Expect = 0.017, Method: Compositional matrix adjust. Identities = 45/179 (25%), Positives = 72/179 (40%), Gaps = 31/179 (17%) Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARH--FDRVLAVEIAKP-SVEAARYNIAAN 254 +++WV + + ELY G G L +A F R V P S E +R + N Sbjct: 357 VVDWVPEGS-----GVCELYAGVGVLGLNVAAKAAFVRCSDVNSFNPRSFERSRKTLPPN 411 Query: 255 HVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-- 312 V MS+ E + D S + + VDPPR GLD + + Sbjct: 412 VRKRVSFEAMSADEAME--------------DGESEGCEVLIVDPPRKGLDKGVMDALMD 457 Query: 313 ------QAYPHILYISCNPDSLCRD-LSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 +A ++Y+SC D+L RD ++++ + F FP + H+E + R Sbjct: 458 PDDPNTEALRRVIYVSCGFDALKRDAMNLIGAGWVLRHSEGFVLFPGSDHIETFAIFDR 516 >gi|83590481|ref|YP_430490.1| hypothetical protein Moth_1645 [Moorella thermoacetica ATCC 39073] gi|83573395|gb|ABC19947.1| hypothetical protein Moth_1645 [Moorella thermoacetica ATCC 39073] Length = 292 Score = 45.1 bits (105), Expect = 0.019, Method: Compositional matrix adjust. Identities = 26/73 (35%), Positives = 44/73 (60%), Gaps = 3/73 (4%) Query: 198 MLEWVLAATKGIQGDL--LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH 255 +L W L G++ DL L++ CG GN++L LAR RV+A++ A + + AA Sbjct: 64 ILHW-LGHHGGLEKDLEVLDIGCGTGNYALPLARRARRVVALDPAAEMLAILKEKAAAEG 122 Query: 256 VNNVKIVRMSSKE 268 +NNV+ ++M+ +E Sbjct: 123 INNVEPIQMAWEE 135 >gi|308159717|gb|EFO62238.1| tRNA (uracil-5-)-methyltransferase, putative [Giardia lamblia P15] Length = 706 Score = 45.1 bits (105), Expect = 0.019, Method: Compositional matrix adjust. Identities = 43/179 (24%), Positives = 80/179 (44%), Gaps = 38/179 (21%) Query: 212 DLLELYCGNGNFSLVLAR------------HFDRVLAVEIAKPSVEAARYNIAANHVNNV 259 +LL++ CG+G LA+ H + + ++ ++ ++ A +N + N +N Sbjct: 515 ELLDICCGSGVIGQCLAQVVLKKMINVQNLHVN-IKGLDCSQNAIWNAEFNASDNFKDNP 573 Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPH 317 I S+ + E+ S K +DPPR+G+ + + ++ + Sbjct: 574 NI---SALYICGKAEQTPEY--------FSGSAKIGILDPPRTGVFQSVLTAIRHSTLEY 622 Query: 318 ILYISCNPDSLCR---DLSILSTTHT---------IERLALFDQFPYTRHMECGVLLVR 364 ++YISCNP ++ + DLSI+ST +E L F+ FP H+E +L R Sbjct: 623 LIYISCNPKTMSQNIIDLSIVSTDSDLSKRTAPFYVESLVGFNMFPGCEHVETVAILHR 681 >gi|330253031|gb|AEC08125.1| zinc finger CCCH domain-containing protein 24 [Arabidopsis thaliana] Length = 804 Score = 45.1 bits (105), Expect = 0.020, Method: Compositional matrix adjust. Identities = 39/174 (22%), Positives = 65/174 (37%), Gaps = 60/174 (34%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK------------ 260 L ++ CG G L LA V+ +E+ +V A N N ++N K Sbjct: 561 LFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVADAERNATINGISNCKFICSKAEDVMSS 620 Query: 261 -------IVRM------------------SSKEFTQAM-------------------RRE 276 + +M S++E T + + Sbjct: 621 LLKQYLDVTQMEEAKPLSNANDDLNKQIPSTEEMTNSEHVADQNLPPSNTQVEELQDNEQ 680 Query: 277 REFNRLKDIDIHSYRFKTI--FVDPPRSGLDDATVGMVQAYPHILYISCNPDSL 328 ++ + L+ +FK + VDPPRSGL A + ++ +P YISCNP++L Sbjct: 681 KDSSSLEPEKTTKPQFKNVVAIVDPPRSGLHPAVIKALRTHPR--YISCNPETL 732 >gi|218461861|ref|ZP_03501952.1| 23S rRNA (uracil-5-)-methyltransferase protein [Rhizobium etli Kim 5] Length = 222 Score = 44.7 bits (104), Expect = 0.023, Method: Compositional matrix adjust. Identities = 51/175 (29%), Positives = 76/175 (43%), Gaps = 16/175 (9%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 F Q M E VLA G +++L+ G G FSL LA RV AVE + Sbjct: 55 GGFAQATKPAEEAMAELVLAHA-GKAKRIVDLFAGAGTFSLRLA-QIGRVHAVEAE--AA 110 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 A + AA +K V + ++ + +EF F + DPPR+G Sbjct: 111 ALAALDQAARKTQGLKPVSVEKRDLFRRPLMTQEFKP----------FDMVVFDPPRAGA 160 Query: 305 DDATVGMVQA-YPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHME 357 + + ++ I +SCNP +L RDL IL + I + DQF ++ H+E Sbjct: 161 EFQCKELARSGVKKIAAVSCNPLTLARDLQILVEGGYRITGVTPIDQFLWSSHVE 215 >gi|77380207|gb|ABA71738.1| RNA methyltransferase fusion protein [Enterococcus faecalis] Length = 160 Score = 44.7 bits (104), Expect = 0.023, Method: Compositional matrix adjust. Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 1/49 (2%) Query: 318 ILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVRK 365 I+Y+SCNP +L RD+++L+ + + + D FP T H+E VLL K Sbjct: 7 IVYVSCNPATLARDIALLTEGGYEAKEIQPVDNFPQTTHIETVVLLSHK 55 >gi|261493634|ref|ZP_05990153.1| putative tRNA methyltransferase [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261310634|gb|EEY11818.1| putative tRNA methyltransferase [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 72 Score = 44.7 bits (104), Expect = 0.026, Method: Composition-based stats. Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 3/73 (4%) Query: 295 IFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPY 352 + V+PPR G+ A + +++Y SCN S+ +D L T + + ++ LFD F + Sbjct: 1 MIVNPPRRGIGQALAEFLNNLGSTYLIYSSCNAQSMAKDFESL-THYELCKVQLFDMFAH 59 Query: 353 TRHMECGVLLVRK 365 T H E L++K Sbjct: 60 TSHYETLTFLIKK 72 >gi|288917114|ref|ZP_06411484.1| RNA methyltransferase, TrmA family [Frankia sp. EUN1f] gi|288351483|gb|EFC85690.1| RNA methyltransferase, TrmA family [Frankia sp. EUN1f] Length = 434 Score = 44.7 bits (104), Expect = 0.026, Method: Compositional matrix adjust. Identities = 43/151 (28%), Positives = 72/151 (47%), Gaps = 15/151 (9%) Query: 214 LELYCGNGNFSLVLARHFD---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270 L+LY G G F+ LA RV+A+E + +V +A ++A ++ V + S T Sbjct: 286 LDLYSGAGLFAAFLAEAVGPTGRVIAMESDEAAVRSAARSLA-----DLPWVSLRSLRVT 340 Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY-PH-ILYISCNPDSL 328 A R + D +DPPR+G + + A+ P ++Y++C+P +L Sbjct: 341 PATVR----GLIGGSDRQGGGVDVAVLDPPRTGAGREVMAALLAHRPRRVVYVACDPAAL 396 Query: 329 CRDLSIL-STTHTIERLALFDQFPYTRHMEC 358 RD++ + + L FD FP T H+EC Sbjct: 397 ARDVAAAAEEGYRLTALRAFDLFPMTSHVEC 427 >gi|255262179|ref|ZP_05341521.1| conserved hypothetical protein [Thalassiobium sp. R2A62] gi|255104514|gb|EET47188.1| conserved hypothetical protein [Thalassiobium sp. R2A62] Length = 404 Score = 44.3 bits (103), Expect = 0.028, Method: Compositional matrix adjust. Identities = 54/204 (26%), Positives = 90/204 (44%), Gaps = 31/204 (15%) Query: 170 RLTVAGRTLIYR-----QIENSFTQPNAGINVHML-EWVLAATKGIQ---GD---LLELY 217 RLT T++ R Q + P G + E LA T +Q GD +++L+ Sbjct: 209 RLTWNDETIVTRRAPAHQFGKAQVAPPPGAFLQATKEGELALTSAVQNALGDASIVVDLF 268 Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEA--ARYNIAANHVNNVKIVRMSSKEFTQAMRR 275 G G F++ +A +V AVE +E A + +A +K V +++ + Sbjct: 269 AGAGTFTIPMAETA-QVHAVEGVADMLETLDAGWRMA----TGLKRVTTEARDLFRRPLL 323 Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYPHILYISCNPDSLCRDLSI 334 EF++ KD + +DPPR+G + T + A P + +SCNP + RD I Sbjct: 324 PDEFHK-KD---------GVVIDPPRAGAEAQTHEIANSAVPLVASVSCNPVTFARDARI 373 Query: 335 L-STTHTIERLALFDQFPYTRHME 357 L ++ + DQF ++ H E Sbjct: 374 LVDAGFALDWVQPVDQFRWSNHTE 397 >gi|170594415|ref|XP_001901959.1| hypothetical protein [Brugia malayi] gi|158590903|gb|EDP29518.1| conserved hypothetical protein [Brugia malayi] Length = 659 Score = 44.3 bits (103), Expect = 0.034, Method: Compositional matrix adjust. Identities = 44/166 (26%), Positives = 70/166 (42%), Gaps = 28/166 (16%) Query: 213 LLELYCGNGNFSLVL---ARHFDR--VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267 +L++ CG G + L A+ R ++ +EI +VE A N N++ + S Sbjct: 494 ILDICCGTGTIGISLMKLAKTVSRKFLVGIEIIPEAVEDATINAIDNNLPS------DSY 547 Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTI----FVDPPRSGLDDATVGMVQAYPH---ILY 320 +F + E F RL+ + KT+ +DPPR+G+ + V +A I + Sbjct: 548 KFVVG-KAENIFFRLERLLPSWIDLKTVNIIGVIDPPRAGIHEKVVIGCRALTQLKKIAF 606 Query: 321 ISCNPD-------SLCRDLS--ILSTTHTIERLALFDQFPYTRHME 357 +SCNP LCR S + + D FP T H E Sbjct: 607 VSCNPSLAMKNMVDLCRPTSKKFAGEPFKLTSITPVDMFPQTSHCE 652 >gi|313156842|gb|EFR56282.1| conserved hypothetical protein [Alistipes sp. HGB5] Length = 382 Score = 44.3 bits (103), Expect = 0.035, Method: Compositional matrix adjust. Identities = 37/124 (29%), Positives = 54/124 (43%), Gaps = 24/124 (19%) Query: 204 AATKGIQGDL-LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262 AA K I GD L+L CG G +L L+R F RV+ +E ++ A N N+++V Sbjct: 80 AAHKRIDGDTALDLTCGLGVDALFLSRRFRRVVTLERSETLARIAAENFRRLQAANIEVV 139 Query: 263 RMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYIS 322 S++E+ Q RF IF DP R D + ++A Sbjct: 140 HTSAEEYLQR---------------PGLRFDWIFADPDRRSADGRKLVRLEA-------- 176 Query: 323 CNPD 326 C+PD Sbjct: 177 CSPD 180 >gi|114685147|ref|XP_001166965.1| PREDICTED: HpaII tiny fragments locus 9C isoform 3 [Pan troglodytes] Length = 567 Score = 44.3 bits (103), Expect = 0.035, Method: Compositional matrix adjust. Identities = 34/134 (25%), Positives = 57/134 (42%), Gaps = 32/134 (23%) Query: 213 LLELYCGNGNFSLVLAR------------------HFDRVLAVEIAKPSVEAARYNIAAN 254 +L++ CG G L LAR RV+ VE+ +VE AR N N Sbjct: 436 VLDVCCGTGTIGLALARGPMYSPPWVGRHHAFLFQKVKRVIGVELCPEAVEDARVNAQDN 495 Query: 255 HVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA 314 ++NV+ +++ + +RL + +DPPR+GL + ++ Sbjct: 496 ELSNVEFHCGRAEDLVPTL-----VSRLASQHL------VAILDPPRAGLHSKVILAIRR 544 Query: 315 YPH---ILYISCNP 325 + +LY+SCNP Sbjct: 545 AKNLRRLLYVSCNP 558 >gi|83314737|ref|XP_730490.1| SAM-dependent methyltransferase [Plasmodium yoelii yoelii str. 17XNL] gi|23490228|gb|EAA22055.1| SAM-dependent methyltransferase related to tRNA(uracyl-5-)-methyltransferase [Plasmodium yoelii yoelii] Length = 600 Score = 43.9 bits (102), Expect = 0.037, Method: Compositional matrix adjust. Identities = 26/112 (23%), Positives = 58/112 (51%), Gaps = 13/112 (11%) Query: 167 VDERLTVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGD-----L 213 + + +T+ G+ IY N +F QPN +N +++ V + + + + Sbjct: 362 IKKEITLFGQNYIYHTYNNYTYKLGANTFFQPNQYLNECIIQIVFKLIQNYKINSQTQCV 421 Query: 214 LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265 +L+CG G +SL L+ F+ V++V+ + +++ NI N++ N+K + ++ Sbjct: 422 FDLFCGIGFYSLPLSSIFNHVISVDYSIENIKNLEENIKLNNIQNIKPIHIN 473 >gi|149912911|ref|ZP_01901445.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Roseobacter sp. AzwK-3b] gi|149813317|gb|EDM73143.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Roseobacter sp. AzwK-3b] Length = 413 Score = 43.9 bits (102), Expect = 0.038, Method: Compositional matrix adjust. Identities = 38/147 (25%), Positives = 66/147 (44%), Gaps = 15/147 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + +L+ G G F+L LAR V AVE + A + +K V +++ Sbjct: 272 VADLFAGCGTFALPLARDM-AVHAVEGDAAMMSA--LDAGWRRTPGLKAVTHETRDL--- 325 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRD 331 RR + L F + +DPPR+G T + + P I Y+SCNP + +D Sbjct: 326 FRRPLLPDELAP-------FDAVVLDPPRAGASAQTAQICASSVPVIAYVSCNPVTFAKD 378 Query: 332 L-SILSTTHTIERLALFDQFPYTRHME 357 ++ + + + + DQF ++ H+E Sbjct: 379 ARQLIDHGYRLVSIRVVDQFRWSSHVE 405 >gi|126734434|ref|ZP_01750181.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Roseobacter sp. CCS2] gi|126717300|gb|EBA14164.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Roseobacter sp. CCS2] Length = 400 Score = 43.9 bits (102), Expect = 0.038, Method: Compositional matrix adjust. Identities = 42/156 (26%), Positives = 69/156 (44%), Gaps = 17/156 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++L+ G G F+L LA+ + V AVE ++A H +R + E Sbjct: 259 IVDLFAGCGTFTLPLAKRAE-VHAVEGEVAMLDALDRGWREGHQ-----LRRVTTETRDL 312 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330 RR E + L+ F T +DPPR+G +A + + A I +SCNP + R Sbjct: 313 FRRPLETDELR-------HFDTAVIDPPRAGA-EAQIETLAASEIKTIAMVSCNPVTFAR 364 Query: 331 DL-SILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 D ++ + + DQF ++ H+E RK Sbjct: 365 DARRLVDAGFDTPWMQVVDQFRWSPHVEIVASFTRK 400 >gi|27377759|ref|NP_769288.1| RNA methyltransferase [Bradyrhizobium japonicum USDA 110] gi|50401761|sp|Q89RW4|Y2648_BRAJA RecName: Full=Uncharacterized RNA methyltransferase bll2648 gi|27350904|dbj|BAC47913.1| RNA methyltransferase [Bradyrhizobium japonicum USDA 110] Length = 415 Score = 43.9 bits (102), Expect = 0.040, Method: Compositional matrix adjust. Identities = 44/161 (27%), Positives = 70/161 (43%), Gaps = 16/161 (9%) Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN 258 L ++A G ++L+L+CG G F+L LA RV A + A A Sbjct: 262 LASLVAERVGKAKEVLDLFCGVGPFALRLAEKA-RVTAYDS---DAGAVAALAKAARTPG 317 Query: 259 VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA-YPH 317 +K +R ++ RR L+D F + DPPR G + + + P Sbjct: 318 LKPIRCEPRDL---FRRPLVPQELRD-------FDAVVFDPPRQGAQAQALKLAASTVPV 367 Query: 318 ILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHME 357 I+ +SCN + RD +L + I+ + DQF +T H+E Sbjct: 368 IVAVSCNVATFARDARLLIDGGYRIDGVVPVDQFRHTPHVE 408 >gi|229153879|ref|ZP_04282009.1| hypothetical protein bcere0010_860 [Bacillus cereus ATCC 4342] gi|228629560|gb|EEK86257.1| hypothetical protein bcere0010_860 [Bacillus cereus ATCC 4342] Length = 199 Score = 43.5 bits (101), Expect = 0.047, Method: Compositional matrix adjust. Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 2/67 (2%) Query: 209 IQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266 I+GD+L++ CG G L LA+ F +V V++ + ++E A+ N A N V NV I + S Sbjct: 58 IKGDILDVGCGYGPIGLSLAKEFQDRKVHMVDVNERALELAKENAANNRVGNVHIFQSSI 117 Query: 267 KEFTQAM 273 E M Sbjct: 118 YENVDGM 124 >gi|213028556|ref|ZP_03343003.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 324 Score = 43.5 bits (101), Expect = 0.047, Method: Compositional matrix adjust. Identities = 35/124 (28%), Positives = 53/124 (42%), Gaps = 25/124 (20%) Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 F Q N +N M LEW+ + +L+L+CG GNF+L LA V+ VE + Sbjct: 218 FIQVNEAVNQQMVARALEWLDVRA---EDRVLDLFCGMGNFTLPLATRAASVVGVEGVQA 274 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDP 299 VE R N N ++NV + +E D+ + F + +DP Sbjct: 275 LVEKGRENAIRNGLHNVTFFHENLEE---------------DVTKQPWAKNGFDKVLLDP 319 Query: 300 PRSG 303 R+G Sbjct: 320 ARAG 323 >gi|213622841|ref|ZP_03375624.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 291 Score = 43.5 bits (101), Expect = 0.047, Method: Compositional matrix adjust. Identities = 35/124 (28%), Positives = 53/124 (42%), Gaps = 25/124 (20%) Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 F Q N +N M LEW+ + +L+L+CG GNF+L LA V+ VE + Sbjct: 177 FIQVNEAVNQQMVARALEWLDVRA---EDRVLDLFCGMGNFTLPLATRAASVVGVEGVQA 233 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDP 299 VE R N N ++NV + +E D+ + F + +DP Sbjct: 234 LVEKGRENAIRNGLHNVTFFHENLEE---------------DVTKQPWAKNGFDKVLLDP 278 Query: 300 PRSG 303 R+G Sbjct: 279 ARAG 282 >gi|187730163|ref|YP_001883033.1| 16S ribosomal RNA m2G1207 methyltransferase [Shigella boydii CDC 3083-94] gi|226712995|sp|B2TZQ2|RSMC_SHIB3 RecName: Full=Ribosomal RNA small subunit methyltransferase C; AltName: Full=16S rRNA m2G1207 methyltransferase; AltName: Full=rRNA (guanine-N(2)-)-methyltransferase rsmC gi|187427155|gb|ACD06429.1| ribosomal RNA small subunit methyltransferase C [Shigella boydii CDC 3083-94] Length = 343 Score = 43.5 bits (101), Expect = 0.048, Method: Compositional matrix adjust. Identities = 31/109 (28%), Positives = 53/109 (48%), Gaps = 7/109 (6%) Query: 152 IGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG 211 GR K + D D +V G T+ + + F++ + +L L T +G Sbjct: 144 FGRLEKQPV-FDADKFWGEYSVDGLTV--KTLPGVFSRDGLDVGSQLLLSTL--TPHTKG 198 Query: 212 DLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNN 258 +L++ CG G S+ ARH R+ +++ P+VEA+R +AAN+V Sbjct: 199 KVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANYVEG 247 >gi|329850869|ref|ZP_08265714.1| 23S rRNA uracil-5--methyltransferase rumA [Asticcacaulis biprosthecum C19] gi|328841184|gb|EGF90755.1| 23S rRNA uracil-5--methyltransferase rumA [Asticcacaulis biprosthecum C19] Length = 78 Score = 43.5 bits (101), Expect = 0.050, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 37/68 (54%), Gaps = 2/68 (2%) Query: 292 FKTIFVDPPRSGLDDATVGMVQA-YPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQ 349 F I DPPR+G + + ++ + +SCNP + RD IL + +++R+ DQ Sbjct: 4 FDAIVFDPPRAGAEAQAAEIARSGVARAVAVSCNPQTFVRDAKILVNAGFSLDRVTPIDQ 63 Query: 350 FPYTRHME 357 F ++ H+E Sbjct: 64 FLWSAHVE 71 >gi|217957676|ref|YP_002336220.1| ybxB protein [Bacillus cereus AH187] gi|222093871|ref|YP_002527921.1| ybxb protein [Bacillus cereus Q1] gi|229136947|ref|ZP_04265574.1| hypothetical protein bcere0013_910 [Bacillus cereus BDRD-ST26] gi|229194491|ref|ZP_04321294.1| hypothetical protein bcere0001_870 [Bacillus cereus m1293] gi|217063004|gb|ACJ77254.1| ybxB protein [Bacillus cereus AH187] gi|221237919|gb|ACM10629.1| ybxB protein [Bacillus cereus Q1] gi|228588957|gb|EEK46972.1| hypothetical protein bcere0001_870 [Bacillus cereus m1293] gi|228646485|gb|EEL02692.1| hypothetical protein bcere0013_910 [Bacillus cereus BDRD-ST26] Length = 199 Score = 43.5 bits (101), Expect = 0.051, Method: Compositional matrix adjust. Identities = 24/67 (35%), Positives = 38/67 (56%), Gaps = 2/67 (2%) Query: 209 IQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266 I+GD+L++ CG G L LA+ F +V V++ + ++E A+ N A N + NV I + S Sbjct: 58 IKGDILDVGCGYGPIGLSLAKEFQDRKVHMVDVNERALELAKENAANNRIGNVHIFQSSV 117 Query: 267 KEFTQAM 273 E M Sbjct: 118 YENVDGM 124 >gi|49476714|ref|YP_034453.1| methyltransferase [Bacillus thuringiensis serovar konkukian str. 97-27] gi|196036938|ref|ZP_03104319.1| ybxB protein [Bacillus cereus W] gi|196042331|ref|ZP_03109606.1| ybxB protein [Bacillus cereus NVH0597-99] gi|218901304|ref|YP_002449138.1| ybxB protein [Bacillus cereus AH820] gi|228925354|ref|ZP_04088450.1| hypothetical protein bthur0010_880 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228931603|ref|ZP_04094509.1| hypothetical protein bthur0009_960 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228943907|ref|ZP_04106292.1| hypothetical protein bthur0007_880 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229119763|ref|ZP_04249024.1| hypothetical protein bcere0016_880 [Bacillus cereus 95/8201] gi|301051838|ref|YP_003790049.1| hypothetical protein BACI_c01280 [Bacillus anthracis CI] gi|49328270|gb|AAT58916.1| conserved hypothetical protein, possible methyltransferase [Bacillus thuringiensis serovar konkukian str. 97-27] gi|195990451|gb|EDX54438.1| ybxB protein [Bacillus cereus W] gi|196026837|gb|EDX65469.1| ybxB protein [Bacillus cereus NVH0597-99] gi|218536109|gb|ACK88507.1| ybxB protein [Bacillus cereus AH820] gi|228663664|gb|EEL19243.1| hypothetical protein bcere0016_880 [Bacillus cereus 95/8201] gi|228815740|gb|EEM61976.1| hypothetical protein bthur0007_880 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228828031|gb|EEM73759.1| hypothetical protein bthur0009_960 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228834276|gb|EEM79817.1| hypothetical protein bthur0010_880 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|300374007|gb|ADK02911.1| conserved hypothetical protein [Bacillus cereus biovar anthracis str. CI] Length = 199 Score = 43.5 bits (101), Expect = 0.051, Method: Compositional matrix adjust. Identities = 24/67 (35%), Positives = 38/67 (56%), Gaps = 2/67 (2%) Query: 209 IQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266 I+GD+L++ CG G L LA+ F +V V++ + ++E A+ N A N + NV I + S Sbjct: 58 IKGDILDVGCGYGPIGLSLAKEFQDRKVHMVDVNERALELAKENAANNKIGNVHIFQSSV 117 Query: 267 KEFTQAM 273 E M Sbjct: 118 YENVDGM 124 >gi|300119588|ref|ZP_07057132.1| ybxB protein [Bacillus cereus SJ1] gi|298723060|gb|EFI63958.1| ybxB protein [Bacillus cereus SJ1] Length = 199 Score = 43.5 bits (101), Expect = 0.052, Method: Compositional matrix adjust. Identities = 24/67 (35%), Positives = 38/67 (56%), Gaps = 2/67 (2%) Query: 209 IQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266 I+GD+L++ CG G L LA+ F +V V++ + ++E A+ N A N + NV I + S Sbjct: 58 IKGDILDVGCGYGPIGLSLAKEFQDRKVHMVDVNERALELAKENAANNKIGNVHIFQSSV 117 Query: 267 KEFTQAM 273 E M Sbjct: 118 YENVDGM 124 >gi|332202891|gb|EGJ16959.1| 23S rRNA (Uracil-5-)-methyltransferase RumA domain protein [Streptococcus pneumoniae GA47901] Length = 107 Score = 43.5 bits (101), Expect = 0.053, Method: Compositional matrix adjust. Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 3/73 (4%) Query: 295 IFVDPPRSGLDDATV--GMVQAYPHILYISCNPDSLCRDLSILST-THTIERLALFDQFP 351 I VDPPR GL ++ + I YISCN ++ RD+ + + ++++ D FP Sbjct: 31 ILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMARDIKLYQELGYELKKVQPVDLFP 90 Query: 352 YTRHMECGVLLVR 364 T H+E LL + Sbjct: 91 QTHHVETVALLSK 103 >gi|229170952|ref|ZP_04298553.1| hypothetical protein bcere0006_880 [Bacillus cereus MM3] gi|228612492|gb|EEK69713.1| hypothetical protein bcere0006_880 [Bacillus cereus MM3] Length = 213 Score = 43.5 bits (101), Expect = 0.053, Method: Compositional matrix adjust. Identities = 24/67 (35%), Positives = 38/67 (56%), Gaps = 2/67 (2%) Query: 209 IQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266 I+GD+L++ CG G L LA+ F +V V++ + ++E A+ N A N + NV I + S Sbjct: 72 IKGDILDVGCGYGPIGLSLAKEFQDRKVHMVDVNERALELAKENAANNRIGNVHIFQSSV 131 Query: 267 KEFTQAM 273 E M Sbjct: 132 YENVDGM 138 >gi|42779182|ref|NP_976429.1| ybxB protein [Bacillus cereus ATCC 10987] gi|42735097|gb|AAS39037.1| ybxB protein [Bacillus cereus ATCC 10987] gi|324324091|gb|ADY19351.1| 16S rRNA m(2)G 1207 methyltransferase [Bacillus thuringiensis serovar finitimus YBT-020] Length = 199 Score = 43.5 bits (101), Expect = 0.053, Method: Compositional matrix adjust. Identities = 24/67 (35%), Positives = 38/67 (56%), Gaps = 2/67 (2%) Query: 209 IQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266 I+GD+L++ CG G L LA+ F +V V++ + ++E A+ N A N + NV I + S Sbjct: 58 IKGDILDVGCGYGPIGLSLAKEFQDRKVHMVDVNERALELAKENAANNRIGNVHIFQSSV 117 Query: 267 KEFTQAM 273 E M Sbjct: 118 YENVDGM 124 >gi|52145117|ref|YP_081712.1| methyltransferase [Bacillus cereus E33L] gi|51978586|gb|AAU20136.1| conserved hypothetical protein; possible methyltransferase [Bacillus cereus E33L] Length = 199 Score = 43.5 bits (101), Expect = 0.054, Method: Compositional matrix adjust. Identities = 24/67 (35%), Positives = 38/67 (56%), Gaps = 2/67 (2%) Query: 209 IQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266 I+GD+L++ CG G L LA+ F +V V++ + ++E A+ N A N + NV I + S Sbjct: 58 IKGDILDVGCGYGPIGLSLAKEFQDRKVHMVDVNERALELAKENAANNKIGNVHIFQSSV 117 Query: 267 KEFTQAM 273 E M Sbjct: 118 YENVDGM 124 >gi|30260292|ref|NP_842669.1| ybxB protein [Bacillus anthracis str. Ames] gi|47525356|ref|YP_016705.1| methyltransferase [Bacillus anthracis str. 'Ames Ancestor'] gi|49183135|ref|YP_026387.1| ybxB protein [Bacillus anthracis str. Sterne] gi|65317558|ref|ZP_00390517.1| COG2813: 16S RNA G1207 methylase RsmC [Bacillus anthracis str. A2012] gi|165873340|ref|ZP_02217942.1| ybxB protein [Bacillus anthracis str. A0488] gi|167636698|ref|ZP_02394985.1| ybxB protein [Bacillus anthracis str. A0442] gi|167642036|ref|ZP_02400265.1| ybxB protein [Bacillus anthracis str. A0193] gi|170689708|ref|ZP_02880884.1| ybxB protein [Bacillus anthracis str. A0465] gi|170709437|ref|ZP_02899844.1| ybxB protein [Bacillus anthracis str. A0389] gi|177656135|ref|ZP_02937162.1| ybxB protein [Bacillus anthracis str. A0174] gi|190569398|ref|ZP_03022285.1| ybxB protein [Bacillus anthracis Tsiankovskii-I] gi|227812774|ref|YP_002812783.1| ybxB protein [Bacillus anthracis str. CDC 684] gi|228983356|ref|ZP_04143569.1| hypothetical protein bthur0001_870 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229602055|ref|YP_002864752.1| ybxB protein [Bacillus anthracis str. A0248] gi|254684395|ref|ZP_05148255.1| ybxB protein [Bacillus anthracis str. CNEVA-9066] gi|254720822|ref|ZP_05182614.1| ybxB protein [Bacillus anthracis str. A1055] gi|254733744|ref|ZP_05191459.1| ybxB protein [Bacillus anthracis str. Western North America USA6153] gi|254739413|ref|ZP_05197113.1| ybxB protein [Bacillus anthracis str. Kruger B] gi|254751214|ref|ZP_05203252.1| ybxB protein [Bacillus anthracis str. Vollum] gi|254756813|ref|ZP_05208841.1| ybxB protein [Bacillus anthracis str. Australia 94] gi|30253613|gb|AAP24155.1| ybxB protein [Bacillus anthracis str. Ames] gi|47500504|gb|AAT29180.1| ybxB protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49177062|gb|AAT52438.1| ybxB protein [Bacillus anthracis str. Sterne] gi|164710920|gb|EDR16495.1| ybxB protein [Bacillus anthracis str. A0488] gi|167510002|gb|EDR85419.1| ybxB protein [Bacillus anthracis str. A0193] gi|167527872|gb|EDR90699.1| ybxB protein [Bacillus anthracis str. A0442] gi|170125654|gb|EDS94574.1| ybxB protein [Bacillus anthracis str. A0389] gi|170666333|gb|EDT17120.1| ybxB protein [Bacillus anthracis str. A0465] gi|172079855|gb|EDT64967.1| ybxB protein [Bacillus anthracis str. A0174] gi|190559491|gb|EDV13489.1| ybxB protein [Bacillus anthracis Tsiankovskii-I] gi|227007229|gb|ACP16972.1| ybxB protein [Bacillus anthracis str. CDC 684] gi|228776346|gb|EEM24699.1| hypothetical protein bthur0001_870 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229266463|gb|ACQ48100.1| ybxB protein [Bacillus anthracis str. A0248] Length = 199 Score = 43.5 bits (101), Expect = 0.054, Method: Compositional matrix adjust. Identities = 24/67 (35%), Positives = 38/67 (56%), Gaps = 2/67 (2%) Query: 209 IQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266 I+GD+L++ CG G L LA+ F +V V++ + ++E A+ N A N + NV I + S Sbjct: 58 IKGDILDVGCGYGPIGLSLAKEFQDRKVHMVDVNERALELAKENAANNRIGNVHIFQSSV 117 Query: 267 KEFTQAM 273 E M Sbjct: 118 YENVDGM 124 >gi|228912840|ref|ZP_04076487.1| hypothetical protein bthur0012_890 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228846776|gb|EEM91781.1| hypothetical protein bthur0012_890 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 213 Score = 43.5 bits (101), Expect = 0.055, Method: Compositional matrix adjust. Identities = 24/67 (35%), Positives = 38/67 (56%), Gaps = 2/67 (2%) Query: 209 IQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266 I+GD+L++ CG G L LA+ F +V V++ + ++E A+ N A N + NV I + S Sbjct: 72 IKGDILDVGCGYGPIGLSLAKEFQDRKVHMVDVNERALELAKENAANNKIGNVHIFQSSV 131 Query: 267 KEFTQAM 273 E M Sbjct: 132 YENVDGM 138 >gi|324506298|gb|ADY42693.1| tRNA (uracil-5-)-methyltransferase A [Ascaris suum] Length = 693 Score = 43.5 bits (101), Expect = 0.057, Method: Compositional matrix adjust. Identities = 43/176 (24%), Positives = 72/176 (40%), Gaps = 31/176 (17%) Query: 213 LLELYCGNGNFSLVL------ARHFDR--VLAVEIAKPSVEAARYNIAANHVNNVKIVRM 264 +L++ CG G L L ++ R ++ +E+ ++E A+ N + N + + Sbjct: 525 ILDVCCGTGTIGLCLLSLLKNSKSAGRRYLVGIEVVPEAIEDAKCNASENMFTEEECCFV 584 Query: 265 SSKEFTQAMRREREFNRLKDIDIHSYRFKTIFV----DPPRSGLDDATV---GMVQAYPH 317 S K E F L+ S + V DPPR+G+ + V M+ + Sbjct: 585 SGKA-------EEVFRGLRHYMPTSVKLDEANVVAILDPPRAGIHEKVVLGCRMLSSLKR 637 Query: 318 ILYISCNPD-------SLCRDLSIL--STTHTIERLALFDQFPYTRHMECGVLLVR 364 ++++SC P LCR S T+ + D FP T+H E V L R Sbjct: 638 LIFVSCEPSLALKNLVDLCRPRSKKYDGEPFTLTSITPVDMFPQTKHCEWVVQLDR 693 >gi|229027949|ref|ZP_04184102.1| hypothetical protein bcere0028_880 [Bacillus cereus AH1271] gi|228733337|gb|EEL84166.1| hypothetical protein bcere0028_880 [Bacillus cereus AH1271] Length = 213 Score = 43.5 bits (101), Expect = 0.057, Method: Compositional matrix adjust. Identities = 24/67 (35%), Positives = 38/67 (56%), Gaps = 2/67 (2%) Query: 209 IQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266 I+GD+L++ CG G L LA+ F +V V++ + ++E A+ N A N + NV I + S Sbjct: 72 IKGDILDVGCGYGPIGLSLAKEFQDRKVHMVDVNERALELAKENAANNRIGNVHIFQSSV 131 Query: 267 KEFTQAM 273 E M Sbjct: 132 YENVDGM 138 >gi|229089232|ref|ZP_04220513.1| hypothetical protein bcere0021_870 [Bacillus cereus Rock3-42] gi|228694071|gb|EEL47753.1| hypothetical protein bcere0021_870 [Bacillus cereus Rock3-42] Length = 164 Score = 43.1 bits (100), Expect = 0.068, Method: Compositional matrix adjust. Identities = 24/67 (35%), Positives = 38/67 (56%), Gaps = 2/67 (2%) Query: 209 IQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266 I+GD+L++ CG G L LA+ F +V V++ + ++E A+ N A N + NV I + S Sbjct: 23 IKGDILDVGCGYGPIGLSLAKEFQDRKVHMVDVNERALELAKENAANNKIGNVHIFQSSV 82 Query: 267 KEFTQAM 273 E M Sbjct: 83 YENVDGM 89 >gi|313680356|ref|YP_004058095.1| sam-dependent methyltransferase [Oceanithermus profundus DSM 14977] gi|313153071|gb|ADR36922.1| SAM-dependent methyltransferase [Oceanithermus profundus DSM 14977] Length = 393 Score = 43.1 bits (100), Expect = 0.071, Method: Compositional matrix adjust. Identities = 27/87 (31%), Positives = 46/87 (52%), Gaps = 12/87 (13%) Query: 214 LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273 L+++ G F+L +ARH V AV+ + ++EAAR N A N + N++ FT+A Sbjct: 224 LDVFAYQGLFALHMARHVAEVEAVDSSAAALEAARENAALNGLENLR--------FTEA- 274 Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPP 300 F+ L++ R+ + +DPP Sbjct: 275 ---NAFDLLRERQRAGERYDVVVLDPP 298 >gi|168703282|ref|ZP_02735559.1| methyltransferase [Gemmata obscuriglobus UQM 2246] Length = 395 Score = 43.1 bits (100), Expect = 0.072, Method: Compositional matrix adjust. Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 13/90 (14%) Query: 213 LLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271 L+ +C +G F L AR VL ++ ++P++E AR N A N + NV Sbjct: 225 FLDAFCYSGGFGLHAARAGAAEVLCLDGSEPALELARRNAALNGLENV------------ 272 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPR 301 A R FN L + +F + +DPP+ Sbjct: 273 AFERVNVFNHLGTLATSGRKFDVVVLDPPK 302 >gi|328953673|ref|YP_004371007.1| hypothetical protein Desac_1995 [Desulfobacca acetoxidans DSM 11109] gi|328453997|gb|AEB09826.1| hypothetical protein Desac_1995 [Desulfobacca acetoxidans DSM 11109] Length = 386 Score = 43.1 bits (100), Expect = 0.077, Method: Compositional matrix adjust. Identities = 31/108 (28%), Positives = 51/108 (47%), Gaps = 12/108 (11%) Query: 193 GINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIA 252 G+ + E LAA QG++L+ + G F+L +A H V+AVE + S+ A+ N Sbjct: 197 GLFLDQRENRLAAAAWAQGEVLDCFSYQGGFALHVASHAQHVVAVESSALSLGLAQDNAR 256 Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300 N ++NV ++ + +F LK S + I +DPP Sbjct: 257 LNRMHNVDWIQANCFDF------------LKKAHASSKFYDLIILDPP 292 >gi|288957174|ref|YP_003447515.1| RNA methyltransferase [Azospirillum sp. B510] gi|288909482|dbj|BAI70971.1| RNA methyltransferase [Azospirillum sp. B510] Length = 443 Score = 43.1 bits (100), Expect = 0.079, Method: Compositional matrix adjust. Identities = 43/155 (27%), Positives = 75/155 (48%), Gaps = 19/155 (12%) Query: 205 ATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRM 264 A G + +L+ G G FS+ LA+ V AVE + +V A +V+ +R+ Sbjct: 299 AGVGQAARIADLFAGVGTFSIPLAQQAS-VHAVEGDEAAVTALG--------RSVQGLRL 349 Query: 265 SSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA-YPHILYISC 323 +++ RR+ N L +++ R+ + DPPR+G + A P ++ +SC Sbjct: 350 TAE------RRDLFENPLGVKELN--RYDAVVFDPPRAGAAAQAAALAGARVPRVVGVSC 401 Query: 324 NPDSLCRDLSIL-STTHTIERLALFDQFPYTRHME 357 NP S RD +L + + ++ DQF ++ HME Sbjct: 402 NPASFARDARVLVDGGYRLVKVWPVDQFLWSAHME 436 >gi|85706915|ref|ZP_01038005.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Roseovarius sp. 217] gi|85668526|gb|EAQ23397.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Roseovarius sp. 217] Length = 417 Score = 42.7 bits (99), Expect = 0.080, Method: Compositional matrix adjust. Identities = 21/69 (30%), Positives = 38/69 (55%), Gaps = 2/69 (2%) Query: 291 RFKTIFVDPPRSGLDDATVGMVQAYPHIL-YISCNPDSLCRDLSI-LSTTHTIERLALFD 348 RF +DPPR+G + + ++ L Y+SCNP + RD + L+ + + + + D Sbjct: 339 RFDAAVIDPPRAGAEAQIAEIAKSRLRCLAYVSCNPVTFARDARVLLAAGYKMGPVRVVD 398 Query: 349 QFPYTRHME 357 QF ++ H+E Sbjct: 399 QFRWSSHVE 407 >gi|194434182|ref|ZP_03066450.1| ribosomal RNA small subunit methyltransferase C [Shigella dysenteriae 1012] gi|194417619|gb|EDX33720.1| ribosomal RNA small subunit methyltransferase C [Shigella dysenteriae 1012] gi|320179333|gb|EFW54291.1| Ribosomal RNA small subunit methyltransferase C [Shigella boydii ATCC 9905] gi|332083687|gb|EGI88905.1| ribosomal RNA small subunit methyltransferase C [Shigella dysenteriae 155-74] Length = 343 Score = 42.7 bits (99), Expect = 0.083, Method: Compositional matrix adjust. Identities = 31/109 (28%), Positives = 52/109 (47%), Gaps = 7/109 (6%) Query: 152 IGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG 211 GR K + D D +V G T+ + + F++ + +L L T +G Sbjct: 144 FGRLEKQPV-FDADKFWGEYSVDGLTV--KTLPGVFSRDGLDVGSQLLLSTL--TPHTKG 198 Query: 212 DLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNN 258 +L++ CG G S+ ARH R+ +++ P+VEA+R +AAN V Sbjct: 199 KVLDIGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEG 247 >gi|332346417|gb|AEE59751.1| ribosomal RNA small subunit methyltransferase C [Escherichia coli UMNK88] Length = 343 Score = 42.7 bits (99), Expect = 0.086, Method: Compositional matrix adjust. Identities = 31/109 (28%), Positives = 53/109 (48%), Gaps = 7/109 (6%) Query: 152 IGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG 211 GR K + D D +V G T+ + + F++ + + +L L T +G Sbjct: 144 FGRLEKQPV-FDADKFWGEYSVDGLTV--KTLPGVFSRDSLDVGSQLLLSTL--TPHTKG 198 Query: 212 DLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNN 258 +L++ CG G S+ ARH R+ +++ P+VEA+R +AAN V Sbjct: 199 KVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEG 247 >gi|225862153|ref|YP_002747531.1| ybxB protein [Bacillus cereus 03BB102] gi|229182495|ref|ZP_04309746.1| hypothetical protein bcere0004_880 [Bacillus cereus BGSC 6E1] gi|225786254|gb|ACO26471.1| ybxB protein [Bacillus cereus 03BB102] gi|228600950|gb|EEK58519.1| hypothetical protein bcere0004_880 [Bacillus cereus BGSC 6E1] Length = 199 Score = 42.7 bits (99), Expect = 0.086, Method: Compositional matrix adjust. Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 2/67 (2%) Query: 209 IQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266 I+GD+L++ CG G L LA+ F ++ V++ + ++E A+ N A N + NV I + S Sbjct: 58 IKGDILDVGCGYGPIGLSLAKEFQDRKIHMVDVNERALELAKENAANNKIGNVHIFQSSV 117 Query: 267 KEFTQAM 273 E M Sbjct: 118 YENVDGM 124 >gi|332083363|gb|EGI88594.1| ribosomal RNA small subunit methyltransferase C [Shigella boydii 5216-82] Length = 343 Score = 42.7 bits (99), Expect = 0.086, Method: Compositional matrix adjust. Identities = 31/109 (28%), Positives = 52/109 (47%), Gaps = 7/109 (6%) Query: 152 IGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG 211 GR K + D D +V G T+ + + F++ + +L L T +G Sbjct: 144 FGRLEKQPV-FDADKFWGEYSVDGLTV--KTLPGVFSRDGLDVGSQLLLSTL--TPHTKG 198 Query: 212 DLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNN 258 +L++ CG G S+ ARH R+ +++ P+VEA+R +AAN V Sbjct: 199 KVLDIGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEG 247 >gi|225873910|ref|YP_002755369.1| hypothetical protein ACP_2325 [Acidobacterium capsulatum ATCC 51196] gi|225792716|gb|ACO32806.1| conserved hypothetical protein [Acidobacterium capsulatum ATCC 51196] Length = 452 Score = 42.7 bits (99), Expect = 0.088, Method: Compositional matrix adjust. Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 8/97 (8%) Query: 204 AATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVR 263 AA + G L++ G F+L LA+ RV V+I++ ++E A N+AAN+ + Sbjct: 270 AAARHAHGQALDICTYQGGFALHLAQVCPRVTGVDISRAALEVAELNLAANY----SALA 325 Query: 264 MSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300 S ++ +A F+ L+D + TI +DPP Sbjct: 326 ASEVDWIEA----NAFDLLRDWSDAGNAYDTIVLDPP 358 >gi|118475870|ref|YP_893021.1| 16S rRNA m(2)G 1207 methyltransferase [Bacillus thuringiensis str. Al Hakam] gi|118415095|gb|ABK83514.1| 16S rRNA m(2)G 1207 methyltransferase [Bacillus thuringiensis str. Al Hakam] Length = 213 Score = 42.7 bits (99), Expect = 0.089, Method: Compositional matrix adjust. Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 2/67 (2%) Query: 209 IQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266 I+GD+L++ CG G L LA+ F ++ V++ + ++E A+ N A N + NV I + S Sbjct: 72 IKGDILDVGCGYGPIGLSLAKEFQDRKIHMVDVNERALELAKENAANNKIGNVHIFQSSV 131 Query: 267 KEFTQAM 273 E M Sbjct: 132 YENVDGM 138 >gi|110808160|ref|YP_691680.1| 16S ribosomal RNA m2G1207 methyltransferase [Shigella flexneri 5 str. 8401] gi|122956950|sp|Q0SX40|RSMC_SHIF8 RecName: Full=Ribosomal RNA small subunit methyltransferase C; AltName: Full=16S rRNA m2G1207 methyltransferase; AltName: Full=rRNA (guanine-N(2)-)-methyltransferase rsmC gi|110617708|gb|ABF06375.1| putative enzyme [Shigella flexneri 5 str. 8401] Length = 343 Score = 42.7 bits (99), Expect = 0.091, Method: Compositional matrix adjust. Identities = 31/109 (28%), Positives = 53/109 (48%), Gaps = 7/109 (6%) Query: 152 IGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG 211 GR K + D D +V G T+ + + F++ + +L L T +G Sbjct: 144 FGRLEKQPV-FDADKFWGEYSVDGLTV--KTLPGVFSRDGLDVGSQLLLSTL--TPHTKG 198 Query: 212 DLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNN 258 +L++ CG G S+ ARH R+ +++ P+VEA+R +AAN V + Sbjct: 199 KVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVES 247 >gi|331240302|ref|XP_003332802.1| tRNA (uracil-5-)-methyltransferase [Puccinia graminis f. sp. tritici CRL 75-36-700-3] gi|309311792|gb|EFP88383.1| tRNA (uracil-5-)-methyltransferase [Puccinia graminis f. sp. tritici CRL 75-36-700-3] Length = 514 Score = 42.7 bits (99), Expect = 0.094, Method: Compositional matrix adjust. Identities = 32/121 (26%), Positives = 58/121 (47%), Gaps = 18/121 (14%) Query: 156 NKTKICLDRDYVDERLTVAGRTL--IYRQIENSFTQPNAGI----NVHMLEWVLAA--TK 207 ++++IC+ D + V + L + Q SF Q N I +M+E ++ + Sbjct: 385 DESRICV----TDHKTIVREKVLDKNFEQNAGSFFQNNPSILGPFMSYMIEELIPTKTPR 440 Query: 208 GIQGD------LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261 GI D L++ YCG+G FS+ LA+ F + +E++ S+ A+ N N + N Sbjct: 441 GIDEDPEQHEYLVDAYCGSGLFSISLAQFFTKTTGIELSSDSLRYAKRNADLNKITNASF 500 Query: 262 V 262 + Sbjct: 501 I 501 >gi|331681354|ref|ZP_08381991.1| ribosomal RNA small subunit methyltransferase C (rRNA(guanine-N(2)-)-methyltransferase) (16S rRNA m2G1207methyltransferase) [Escherichia coli H299] gi|331081575|gb|EGI52736.1| ribosomal RNA small subunit methyltransferase C (rRNA(guanine-N(2)-)-methyltransferase) (16S rRNA m2G1207methyltransferase) [Escherichia coli H299] Length = 343 Score = 42.7 bits (99), Expect = 0.096, Method: Compositional matrix adjust. Identities = 31/109 (28%), Positives = 52/109 (47%), Gaps = 7/109 (6%) Query: 152 IGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG 211 GR K + D D +V G T+ + + F++ + +L L T +G Sbjct: 144 FGRLEKQPV-FDADKFWGEYSVDGLTV--KTLPGVFSRDGLDVGSQLLLSTL--TPHTKG 198 Query: 212 DLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNN 258 +L++ CG G S+ ARH R+ +++ P+VEA+R +AAN V Sbjct: 199 KVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEG 247 >gi|254037381|ref|ZP_04871458.1| ribosomal RNA small subunit methyltransferase C [Escherichia sp. 1_1_43] gi|226840487|gb|EEH72489.1| ribosomal RNA small subunit methyltransferase C [Escherichia sp. 1_1_43] gi|323935213|gb|EGB31573.1| methyltransferase small domain-containing protein [Escherichia coli E1520] Length = 343 Score = 42.7 bits (99), Expect = 0.096, Method: Compositional matrix adjust. Identities = 31/109 (28%), Positives = 52/109 (47%), Gaps = 7/109 (6%) Query: 152 IGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG 211 GR K + D D +V G T+ + + F++ + +L L T +G Sbjct: 144 FGRLEKQPV-FDADKFWGEYSVDGLTI--KTLPGVFSRDGLDVGSQLLLSTL--TPHTKG 198 Query: 212 DLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNN 258 +L++ CG G S+ ARH R+ +++ P+VEA+R +AAN V Sbjct: 199 KVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEG 247 >gi|170021670|ref|YP_001726624.1| 16S ribosomal RNA m2G1207 methyltransferase [Escherichia coli ATCC 8739] gi|188494749|ref|ZP_03002019.1| ribosomal RNA small subunit methyltransferase C [Escherichia coli 53638] gi|291285749|ref|YP_003502567.1| 16S RNA G1207 methylase RsmC [Escherichia coli O55:H7 str. CB9615] gi|300918454|ref|ZP_07135051.1| methyltransferase small domain protein [Escherichia coli MS 115-1] gi|300932046|ref|ZP_07147341.1| methyltransferase small domain protein [Escherichia coli MS 187-1] gi|300946754|ref|ZP_07161002.1| methyltransferase small domain protein [Escherichia coli MS 116-1] gi|300959114|ref|ZP_07171200.1| methyltransferase small domain protein [Escherichia coli MS 175-1] gi|301646887|ref|ZP_07246733.1| methyltransferase small domain protein [Escherichia coli MS 146-1] gi|307136569|ref|ZP_07495925.1| 16S ribosomal RNA m2G1207 methyltransferase [Escherichia coli H736] gi|312966083|ref|ZP_07780309.1| ribosomal RNA small subunit methyltransferase C [Escherichia coli 2362-75] gi|331640412|ref|ZP_08341560.1| ribosomal RNA small subunit methyltransferase C (rRNA(guanine-N(2)-)-methyltransferase) (16S rRNA m2G1207methyltransferase) [Escherichia coli H736] gi|226712947|sp|B1IS49|RSMC_ECOLC RecName: Full=Ribosomal RNA small subunit methyltransferase C; AltName: Full=16S rRNA m2G1207 methyltransferase; AltName: Full=rRNA (guanine-N(2)-)-methyltransferase rsmC gi|169756598|gb|ACA79297.1| rRNA (guanine-N(2)-)-methyltransferase [Escherichia coli ATCC 8739] gi|188489948|gb|EDU65051.1| ribosomal RNA small subunit methyltransferase C [Escherichia coli 53638] gi|209748988|gb|ACI72801.1| ribosomal RNA small subunit methyltransferase [Escherichia coli] gi|209748994|gb|ACI72804.1| ribosomal RNA small subunit methyltransferase [Escherichia coli] gi|284924549|emb|CBG37688.1| ribosomal RNA small subunit methyltransferase C [Escherichia coli 042] gi|290765622|gb|ADD59583.1| 16S RNA G1207 methylase RsmC [Escherichia coli O55:H7 str. CB9615] gi|300314262|gb|EFJ64046.1| methyltransferase small domain protein [Escherichia coli MS 175-1] gi|300414377|gb|EFJ97687.1| methyltransferase small domain protein [Escherichia coli MS 115-1] gi|300453578|gb|EFK17198.1| methyltransferase small domain protein [Escherichia coli MS 116-1] gi|300460191|gb|EFK23684.1| methyltransferase small domain protein [Escherichia coli MS 187-1] gi|301074940|gb|EFK89746.1| methyltransferase small domain protein [Escherichia coli MS 146-1] gi|312289326|gb|EFR17220.1| ribosomal RNA small subunit methyltransferase C [Escherichia coli 2362-75] gi|320644112|gb|EFX13187.1| 16S ribosomal RNA m2G1207 methyltransferase [Escherichia coli O157:H- str. 493-89] gi|320649429|gb|EFX17965.1| 16S ribosomal RNA m2G1207 methyltransferase [Escherichia coli O157:H- str. H 2687] gi|320654830|gb|EFX22799.1| 16S ribosomal RNA m2G1207 methyltransferase [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320660682|gb|EFX28143.1| 16S ribosomal RNA m2G1207 methyltransferase [Escherichia coli O55:H7 str. USDA 5905] gi|320665519|gb|EFX32569.1| 16S ribosomal RNA m2G1207 methyltransferase [Escherichia coli O157:H7 str. LSU-61] gi|323960144|gb|EGB55788.1| methyltransferase small domain-containing protein [Escherichia coli H489] gi|323965372|gb|EGB60828.1| methyltransferase small domain-containing protein [Escherichia coli M863] gi|327250301|gb|EGE62020.1| ribosomal RNA small subunit methyltransferase C [Escherichia coli STEC_7v] gi|331040158|gb|EGI12365.1| ribosomal RNA small subunit methyltransferase C (rRNA(guanine-N(2)-)-methyltransferase) (16S rRNA m2G1207methyltransferase) [Escherichia coli H736] Length = 343 Score = 42.7 bits (99), Expect = 0.098, Method: Compositional matrix adjust. Identities = 31/109 (28%), Positives = 52/109 (47%), Gaps = 7/109 (6%) Query: 152 IGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG 211 GR K + D D +V G T+ + + F++ + +L L T +G Sbjct: 144 FGRLEKQPV-FDADKFWGEYSVDGLTV--KTLPGVFSRDGLDVGSQLLLSTL--TPHTKG 198 Query: 212 DLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNN 258 +L++ CG G S+ ARH R+ +++ P+VEA+R +AAN V Sbjct: 199 KVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEG 247 >gi|15804942|ref|NP_290984.1| 16S ribosomal RNA m2G1207 methyltransferase [Escherichia coli O157:H7 EDL933] gi|15834583|ref|NP_313356.1| 16S ribosomal RNA m2G1207 methyltransferase [Escherichia coli O157:H7 str. Sakai] gi|168750994|ref|ZP_02776016.1| ribosomal RNA small subunit methyltransferase C [Escherichia coli O157:H7 str. EC4113] gi|168766650|ref|ZP_02791657.1| ribosomal RNA small subunit methyltransferase C [Escherichia coli O157:H7 str. EC4486] gi|168776653|ref|ZP_02801660.1| ribosomal RNA small subunit methyltransferase C [Escherichia coli O157:H7 str. EC4196] gi|168781658|ref|ZP_02806665.1| ribosomal RNA small subunit methyltransferase C [Escherichia coli O157:H7 str. EC4076] gi|168785012|ref|ZP_02810019.1| ribosomal RNA small subunit methyltransferase C [Escherichia coli O157:H7 str. EC869] gi|168797941|ref|ZP_02822948.1| ribosomal RNA small subunit methyltransferase C [Escherichia coli O157:H7 str. EC508] gi|195937642|ref|ZP_03083024.1| 16S ribosomal RNA m2G1207 methyltransferase [Escherichia coli O157:H7 str. EC4024] gi|208806907|ref|ZP_03249244.1| ribosomal RNA small subunit methyltransferase C [Escherichia coli O157:H7 str. EC4206] gi|208814485|ref|ZP_03255814.1| ribosomal RNA small subunit methyltransferase C [Escherichia coli O157:H7 str. EC4045] gi|208819277|ref|ZP_03259597.1| ribosomal RNA small subunit methyltransferase C [Escherichia coli O157:H7 str. EC4042] gi|209398157|ref|YP_002273891.1| ribosomal RNA small subunit methyltransferase C [Escherichia coli O157:H7 str. EC4115] gi|217326219|ref|ZP_03442303.1| ribosomal RNA small subunit methyltransferase C [Escherichia coli O157:H7 str. TW14588] gi|254796366|ref|YP_003081203.1| 16S ribosomal RNA m2G1207 methyltransferase [Escherichia coli O157:H7 str. TW14359] gi|261226727|ref|ZP_05941008.1| 16S rRNA m2G1207 methylase [Escherichia coli O157:H7 str. FRIK2000] gi|261256889|ref|ZP_05949422.1| 16S rRNA m2G1207 methylase [Escherichia coli O157:H7 str. FRIK966] gi|81764381|sp|Q8X510|RSMC_ECO57 RecName: Full=Ribosomal RNA small subunit methyltransferase C; AltName: Full=16S rRNA m2G1207 methyltransferase; AltName: Full=rRNA (guanine-N(2)-)-methyltransferase rsmC gi|226712940|sp|B5Z4Q2|RSMC_ECO5E RecName: Full=Ribosomal RNA small subunit methyltransferase C; AltName: Full=16S rRNA m2G1207 methyltransferase; AltName: Full=rRNA (guanine-N(2)-)-methyltransferase rsmC gi|12519394|gb|AAG59551.1|AE005668_6 putative enzyme [Escherichia coli O157:H7 str. EDL933] gi|13364807|dbj|BAB38752.1| ribosomal RNA small subunit methyltransferase [Escherichia coli O157:H7 str. Sakai] gi|187768028|gb|EDU31872.1| ribosomal RNA small subunit methyltransferase C [Escherichia coli O157:H7 str. EC4196] gi|188014927|gb|EDU53049.1| ribosomal RNA small subunit methyltransferase C [Escherichia coli O157:H7 str. EC4113] gi|189000759|gb|EDU69745.1| ribosomal RNA small subunit methyltransferase C [Escherichia coli O157:H7 str. EC4076] gi|189364171|gb|EDU82590.1| ribosomal RNA small subunit methyltransferase C [Escherichia coli O157:H7 str. EC4486] gi|189375045|gb|EDU93461.1| ribosomal RNA small subunit methyltransferase C [Escherichia coli O157:H7 str. EC869] gi|189379587|gb|EDU98003.1| ribosomal RNA small subunit methyltransferase C [Escherichia coli O157:H7 str. EC508] gi|208726708|gb|EDZ76309.1| ribosomal RNA small subunit methyltransferase C [Escherichia coli O157:H7 str. EC4206] gi|208735762|gb|EDZ84449.1| ribosomal RNA small subunit methyltransferase C [Escherichia coli O157:H7 str. EC4045] gi|208739400|gb|EDZ87082.1| ribosomal RNA small subunit methyltransferase C [Escherichia coli O157:H7 str. EC4042] gi|209159557|gb|ACI36990.1| ribosomal RNA small subunit methyltransferase C [Escherichia coli O157:H7 str. EC4115] gi|209748990|gb|ACI72802.1| ribosomal RNA small subunit methyltransferase [Escherichia coli] gi|209748992|gb|ACI72803.1| ribosomal RNA small subunit methyltransferase [Escherichia coli] gi|209748996|gb|ACI72805.1| ribosomal RNA small subunit methyltransferase [Escherichia coli] gi|217322440|gb|EEC30864.1| ribosomal RNA small subunit methyltransferase C [Escherichia coli O157:H7 str. TW14588] gi|254595766|gb|ACT75127.1| 16S rRNA m2G1207 methylase [Escherichia coli O157:H7 str. TW14359] gi|320190514|gb|EFW65164.1| Ribosomal RNA small subunit methyltransferase C [Escherichia coli O157:H7 str. EC1212] gi|320638709|gb|EFX08370.1| 16S ribosomal RNA m2G1207 methyltransferase [Escherichia coli O157:H7 str. G5101] gi|326345317|gb|EGD69060.1| Ribosomal RNA small subunit methyltransferase C [Escherichia coli O157:H7 str. 1125] gi|326346829|gb|EGD70563.1| Ribosomal RNA small subunit methyltransferase C [Escherichia coli O157:H7 str. 1044] Length = 343 Score = 42.7 bits (99), Expect = 0.099, Method: Compositional matrix adjust. Identities = 31/109 (28%), Positives = 52/109 (47%), Gaps = 7/109 (6%) Query: 152 IGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG 211 GR K + D D +V G T+ + + F++ + +L L T +G Sbjct: 144 FGRLEKQPV-FDADKFWGEYSVDGLTV--KTLPGVFSRDGLDVGSQLLLSTL--TPHTKG 198 Query: 212 DLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNN 258 +L++ CG G S+ ARH R+ +++ P+VEA+R +AAN V Sbjct: 199 KVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEG 247 >gi|24115600|ref|NP_710110.1| 16S ribosomal RNA m2G1207 methyltransferase [Shigella flexneri 2a str. 301] gi|30065609|ref|NP_839780.1| 16S ribosomal RNA m2G1207 methyltransferase [Shigella flexneri 2a str. 2457T] gi|81837976|sp|Q820Z6|RSMC_SHIFL RecName: Full=Ribosomal RNA small subunit methyltransferase C; AltName: Full=16S rRNA m2G1207 methyltransferase; AltName: Full=rRNA (guanine-N(2)-)-methyltransferase rsmC gi|24054937|gb|AAN45817.1| putative enzyme [Shigella flexneri 2a str. 301] gi|30043873|gb|AAP19592.1| putative enzyme [Shigella flexneri 2a str. 2457T] gi|281603708|gb|ADA76692.1| RRNA (Guanine-N(2)-)-methyltransferase [Shigella flexneri 2002017] gi|313646274|gb|EFS10736.1| ribosomal RNA small subunit methyltransferase C [Shigella flexneri 2a str. 2457T] gi|332748881|gb|EGJ79305.1| ribosomal RNA small subunit methyltransferase C [Shigella flexneri 4343-70] gi|332749133|gb|EGJ79556.1| ribosomal RNA small subunit methyltransferase C [Shigella flexneri K-671] gi|332749660|gb|EGJ80076.1| ribosomal RNA small subunit methyltransferase C [Shigella flexneri 2747-71] gi|332768755|gb|EGJ98934.1| 16S rRNA methyltransferase [Shigella flexneri 2930-71] gi|333009463|gb|EGK28919.1| ribosomal RNA small subunit methyltransferase C [Shigella flexneri K-218] gi|333022399|gb|EGK41637.1| ribosomal RNA small subunit methyltransferase C [Shigella flexneri K-304] Length = 343 Score = 42.7 bits (99), Expect = 0.10, Method: Compositional matrix adjust. Identities = 31/109 (28%), Positives = 52/109 (47%), Gaps = 7/109 (6%) Query: 152 IGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG 211 GR K + D D +V G T+ + + F++ + +L L T +G Sbjct: 144 FGRLEKQPV-FDADKFWGEYSVDGLTV--KTLPGVFSRDGLDVGSQLLLSTL--TPHTKG 198 Query: 212 DLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNN 258 +L++ CG G S+ ARH R+ +++ P+VEA+R +AAN V Sbjct: 199 KVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEG 247 >gi|333010461|gb|EGK29894.1| ribosomal RNA small subunit methyltransferase C [Shigella flexneri VA-6] Length = 343 Score = 42.7 bits (99), Expect = 0.10, Method: Compositional matrix adjust. Identities = 31/109 (28%), Positives = 52/109 (47%), Gaps = 7/109 (6%) Query: 152 IGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG 211 GR K + D D +V G T+ + + F++ + +L L T +G Sbjct: 144 FGRLEKQPV-FDADKFWGEYSVDGLTV--KTLPGVFSRDGLDVGSQLLLSTL--TPHTKG 198 Query: 212 DLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNN 258 +L++ CG G S+ ARH R+ +++ P+VEA+R +AAN V Sbjct: 199 KVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEG 247 >gi|309704829|emb|CBJ04180.1| ribosomal RNA small subunit methyltransferase C [Escherichia coli ETEC H10407] Length = 343 Score = 42.7 bits (99), Expect = 0.10, Method: Compositional matrix adjust. Identities = 31/109 (28%), Positives = 52/109 (47%), Gaps = 7/109 (6%) Query: 152 IGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG 211 GR K + D D +V G T+ + + F++ + +L L T +G Sbjct: 144 FGRLEKQPV-FDADKFWGEYSVDGLTV--KTLPGVFSRDGLDVGSQLLLSTL--TPHTKG 198 Query: 212 DLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNN 258 +L++ CG G S+ ARH R+ +++ P+VEA+R +AAN V Sbjct: 199 KVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEG 247 >gi|218698207|ref|YP_002405874.1| 16S ribosomal RNA m2G1207 methyltransferase [Escherichia coli 55989] gi|237704107|ref|ZP_04534588.1| ribosomal RNA small subunit methyltransferase C [Escherichia sp. 3_2_53FAA] gi|260847187|ref|YP_003224965.1| 16S rRNA m2G1207 methylase RsmC [Escherichia coli O103:H2 str. 12009] gi|300905357|ref|ZP_07123127.1| methyltransferase small domain protein [Escherichia coli MS 84-1] gi|301303471|ref|ZP_07209594.1| methyltransferase small domain protein [Escherichia coli MS 124-1] gi|226712939|sp|B7LEL6|RSMC_ECO55 RecName: Full=Ribosomal RNA small subunit methyltransferase C; AltName: Full=16S rRNA m2G1207 methyltransferase; AltName: Full=rRNA (guanine-N(2)-)-methyltransferase rsmC gi|218354939|emb|CAV02161.1| 16S RNA m2G1207 methylase [Escherichia coli 55989] gi|226902019|gb|EEH88278.1| ribosomal RNA small subunit methyltransferase C [Escherichia sp. 3_2_53FAA] gi|257762334|dbj|BAI33831.1| 16S rRNA m2G1207 methylase RsmC [Escherichia coli O103:H2 str. 12009] gi|281181513|dbj|BAI57843.1| ribosomal RNA small subunit methyltransferase [Escherichia coli SE15] gi|300402766|gb|EFJ86304.1| methyltransferase small domain protein [Escherichia coli MS 84-1] gi|300841198|gb|EFK68958.1| methyltransferase small domain protein [Escherichia coli MS 124-1] gi|315255771|gb|EFU35739.1| methyltransferase small domain protein [Escherichia coli MS 85-1] gi|315284963|gb|EFU44408.1| methyltransferase small domain protein [Escherichia coli MS 110-3] gi|323163257|gb|EFZ49088.1| ribosomal RNA small subunit methyltransferase C [Escherichia coli E128010] gi|323955326|gb|EGB51098.1| methyltransferase small domain-containing protein [Escherichia coli H263] Length = 343 Score = 42.7 bits (99), Expect = 0.10, Method: Compositional matrix adjust. Identities = 31/109 (28%), Positives = 52/109 (47%), Gaps = 7/109 (6%) Query: 152 IGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG 211 GR K + D D +V G T+ + + F++ + +L L T +G Sbjct: 144 FGRLEKQPV-FDADKFWGEYSVDGLTV--KTLPGVFSRDGLDVGSQLLLSTL--TPHTKG 198 Query: 212 DLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNN 258 +L++ CG G S+ ARH R+ +++ P+VEA+R +AAN V Sbjct: 199 KVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEG 247 >gi|323975871|gb|EGB70967.1| methyltransferase small domain-containing protein [Escherichia coli TW10509] Length = 343 Score = 42.4 bits (98), Expect = 0.10, Method: Compositional matrix adjust. Identities = 31/109 (28%), Positives = 52/109 (47%), Gaps = 7/109 (6%) Query: 152 IGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG 211 GR K + D D +V G T+ + + F++ + +L L T +G Sbjct: 144 FGRLEKQPV-FDADKFWGEYSVDGLTV--KTLPGVFSRDGLDVGSQLLLSTL--TPHTKG 198 Query: 212 DLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNN 258 +L++ CG G S+ ARH R+ +++ P+VEA+R +AAN V Sbjct: 199 KVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEG 247 >gi|333011350|gb|EGK30764.1| ribosomal RNA small subunit methyltransferase C [Shigella flexneri K-272] gi|333012245|gb|EGK31627.1| ribosomal RNA small subunit methyltransferase C [Shigella flexneri K-227] Length = 343 Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust. Identities = 31/109 (28%), Positives = 52/109 (47%), Gaps = 7/109 (6%) Query: 152 IGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG 211 GR K + D D +V G T+ + + F++ + +L L T +G Sbjct: 144 FGRLEKQPV-FDADKFWGEYSVDGLTV--KTLPGVFSRDGLDVGSQLLLSTL--TPHTKG 198 Query: 212 DLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNN 258 +L++ CG G S+ ARH R+ +++ P+VEA+R +AAN V Sbjct: 199 KVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEG 247 >gi|47570394|ref|ZP_00241034.1| 16S rRNA m(2)G 1207 methyltransferase [Bacillus cereus G9241] gi|47552936|gb|EAL11347.1| 16S rRNA m(2)G 1207 methyltransferase [Bacillus cereus G9241] Length = 199 Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust. Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 2/67 (2%) Query: 209 IQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266 I+GD+L++ CG G L LA+ F +V V++ + ++E A N A N + NV I + S Sbjct: 58 IKGDILDVGCGYGPIGLSLAKEFQDRKVHMVDVNERALELAEENAANNRIGNVHIFQSSV 117 Query: 267 KEFTQAM 273 E M Sbjct: 118 YENVDGM 124 >gi|331650856|ref|ZP_08351884.1| ribosomal RNA small subunit methyltransferase C (rRNA(guanine-N(2)-)-methyltransferase) (16S rRNA m2G1207methyltransferase) [Escherichia coli M718] gi|331051310|gb|EGI23359.1| ribosomal RNA small subunit methyltransferase C (rRNA(guanine-N(2)-)-methyltransferase) (16S rRNA m2G1207methyltransferase) [Escherichia coli M718] Length = 343 Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust. Identities = 31/109 (28%), Positives = 52/109 (47%), Gaps = 7/109 (6%) Query: 152 IGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG 211 GR K + D D +V G T+ + + F++ + +L L T +G Sbjct: 144 FGRLEKQPV-FDADKFWGEYSVDGLTV--KTLPGVFSRDGLDVGSQLLLSTL--TPHTKG 198 Query: 212 DLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNN 258 +L++ CG G S+ ARH R+ +++ P+VEA+R +AAN V Sbjct: 199 KVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEG 247 >gi|229083421|ref|ZP_04215769.1| hypothetical protein bcere0022_1010 [Bacillus cereus Rock3-44] gi|228699854|gb|EEL52491.1| hypothetical protein bcere0022_1010 [Bacillus cereus Rock3-44] Length = 213 Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 209 IQGDLLELYCGNGNFSLVLARHFDR--VLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265 I+GD+L++ CG G L LA+ F V V++ + ++E A+ N A N ++NV+I + S Sbjct: 72 IKGDVLDVGCGYGPIGLSLAKEFQERSVHMVDVNERALELAKENAANNKIDNVRIFQSS 130 >gi|301330281|ref|ZP_07222935.1| methyltransferase small domain protein [Escherichia coli MS 78-1] gi|300843740|gb|EFK71500.1| methyltransferase small domain protein [Escherichia coli MS 78-1] Length = 343 Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust. Identities = 31/109 (28%), Positives = 52/109 (47%), Gaps = 7/109 (6%) Query: 152 IGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG 211 GR K + D D +V G T+ + + F++ + +L L T +G Sbjct: 144 FGRLEKQPV-FDADKFWGEYSVDGLTV--KTLPGVFSRDGLDVGSQLLLSTL--TPHTKG 198 Query: 212 DLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNN 258 +L++ CG G S+ ARH R+ +++ P+VEA+R +AAN V Sbjct: 199 KVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEG 247 >gi|293408055|ref|ZP_06651895.1| rsmC [Escherichia coli B354] gi|291472306|gb|EFF14788.1| rsmC [Escherichia coli B354] Length = 343 Score = 42.4 bits (98), Expect = 0.12, Method: Compositional matrix adjust. Identities = 31/109 (28%), Positives = 52/109 (47%), Gaps = 7/109 (6%) Query: 152 IGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG 211 GR K + D D +V G T+ + + F++ + +L L T +G Sbjct: 144 FGRLEKQPV-FDADKFWGEYSVDGLTV--KTLPGVFSRDGLDVGSQLLLSTL--TPHTKG 198 Query: 212 DLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNN 258 +L++ CG G S+ ARH R+ +++ P+VEA+R +AAN V Sbjct: 199 KVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEG 247 >gi|260858545|ref|YP_003232436.1| 16S rRNA m2G1207 methylase RsmC [Escherichia coli O26:H11 str. 11368] gi|257757194|dbj|BAI28696.1| 16S rRNA m2G1207 methylase RsmC [Escherichia coli O26:H11 str. 11368] gi|323157742|gb|EFZ43847.1| ribosomal RNA small subunit methyltransferase C [Escherichia coli EPECa14] Length = 343 Score = 42.4 bits (98), Expect = 0.12, Method: Compositional matrix adjust. Identities = 31/109 (28%), Positives = 52/109 (47%), Gaps = 7/109 (6%) Query: 152 IGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG 211 GR K + D D +V G T+ + + F++ + +L L T +G Sbjct: 144 FGRLEKQPV-FDADKFWGEYSVDGLTV--KTLPGVFSRDGLDVGSQLLLSTL--TPHTKG 198 Query: 212 DLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNN 258 +L++ CG G S+ ARH R+ +++ P+VEA+R +AAN V Sbjct: 199 KVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEG 247 >gi|108762459|ref|YP_630466.1| hypothetical protein MXAN_2245 [Myxococcus xanthus DK 1622] gi|108466339|gb|ABF91524.1| hypothetical protein MXAN_2245 [Myxococcus xanthus DK 1622] Length = 401 Score = 42.4 bits (98), Expect = 0.12, Method: Compositional matrix adjust. Identities = 23/80 (28%), Positives = 41/80 (51%) Query: 197 HMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV 256 H+L W+ TK + +++EL CG G+ + A+ V +I PSV AA+ + A + Sbjct: 59 HVLPWLARYTKLGKANVVELGCGTGSSTAAFAQVASHVTGYDIHAPSVRAAQSRMKALGL 118 Query: 257 NNVKIVRMSSKEFTQAMRRE 276 NV + + + +R+E Sbjct: 119 RNVDTRVVEPAKLLEQLRQE 138 >gi|296117766|ref|ZP_06836350.1| SAM-dependent methyltransferase [Corynebacterium ammoniagenes DSM 20306] gi|295969497|gb|EFG82738.1| SAM-dependent methyltransferase [Corynebacterium ammoniagenes DSM 20306] Length = 438 Score = 42.4 bits (98), Expect = 0.12, Method: Compositional matrix adjust. Identities = 37/152 (24%), Positives = 67/152 (44%), Gaps = 18/152 (11%) Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPS-VEAARYNIAANHVNNVKIVRMSSKEFTQAM 273 +LY G G F +AR KP+ V + Y+ AA +N + + + Sbjct: 284 DLYGGVGVFVPAIARSLG-----SPQKPARVISVDYSPAATALNQSDLEQYELDVVS--- 335 Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSG--LDDATVGMVQAYPHILYISCNPDSLCRD 331 +R++ + + +DPPR+G LD + A ++++ C+P + RD Sbjct: 336 ------DRVEKVAAQLPGPTAVVLDPPRTGAGLDVVSTVASVAPQRVVHVGCDPATFARD 389 Query: 332 LSILST-THTIERLALFDQFPYTRHMECGVLL 362 ++ + ++RL+L + FP T H E LL Sbjct: 390 INYWNEHGFQVQRLSLVNAFPGTHHFEVIALL 421 >gi|82546721|ref|YP_410668.1| 16S ribosomal RNA m2G1207 methyltransferase [Shigella boydii Sb227] gi|123557836|sp|Q31SW8|RSMC_SHIBS RecName: Full=Ribosomal RNA small subunit methyltransferase C; AltName: Full=16S rRNA m2G1207 methyltransferase; AltName: Full=rRNA (guanine-N(2)-)-methyltransferase rsmC gi|81248132|gb|ABB68840.1| putative enzyme [Shigella boydii Sb227] gi|332090318|gb|EGI95416.1| ribosomal RNA small subunit methyltransferase C [Shigella boydii 3594-74] Length = 343 Score = 42.4 bits (98), Expect = 0.12, Method: Compositional matrix adjust. Identities = 31/109 (28%), Positives = 53/109 (48%), Gaps = 7/109 (6%) Query: 152 IGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG 211 GR K + D D +V G T+ + + + F++ + +L L T +G Sbjct: 144 FGRLEKQPV-FDADKFWGEYSVDGLTV--KTLPSVFSRDGLDVGSQLLLSTL--TPHTKG 198 Query: 212 DLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNN 258 +L++ CG G S+ ARH R+ +++ P+VEA+R +AAN V Sbjct: 199 KVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANCVEG 247 >gi|331666196|ref|ZP_08367077.1| ribosomal RNA small subunit methyltransferase C (rRNA(guanine-N(2)-)-methyltransferase) (16S rRNA m2G1207methyltransferase) [Escherichia coli TA271] gi|331066407|gb|EGI38284.1| ribosomal RNA small subunit methyltransferase C (rRNA(guanine-N(2)-)-methyltransferase) (16S rRNA m2G1207methyltransferase) [Escherichia coli TA271] Length = 343 Score = 42.4 bits (98), Expect = 0.13, Method: Compositional matrix adjust. Identities = 31/109 (28%), Positives = 52/109 (47%), Gaps = 7/109 (6%) Query: 152 IGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG 211 GR K + D D +V G T+ + + F++ + +L L T +G Sbjct: 144 FGRLEKQPV-FDADKFWGEYSVDGLTV--KTLPGVFSRDGLDVGSQLLLSTL--TPHTKG 198 Query: 212 DLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNN 258 +L++ CG G S+ ARH R+ +++ P+VEA+R +AAN V Sbjct: 199 KVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANCVEG 247 >gi|322514824|ref|ZP_08067843.1| 23S rRNA (uracil-5-)-methyltransferase [Actinobacillus ureae ATCC 25976] gi|322119206|gb|EFX91347.1| 23S rRNA (uracil-5-)-methyltransferase [Actinobacillus ureae ATCC 25976] Length = 93 Score = 42.4 bits (98), Expect = 0.13, Method: Composition-based stats. Identities = 27/75 (36%), Positives = 42/75 (56%), Gaps = 9/75 (12%) Query: 191 NAGINVHM----LEWV-LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 N +N M LEW+ L+A Q +L+L+CG GNF+L +A+ V+ VE +P V Sbjct: 2 NGNLNEKMVDKALEWLNLSA----QDRVLDLFCGMGNFTLPIAKQAGFVVGVESVQPMVA 57 Query: 246 AARYNIAANHVNNVK 260 A+ N + + NV+ Sbjct: 58 QAKQNQDTSGLKNVE 72 >gi|157156493|ref|YP_001465889.1| 16S ribosomal RNA m2G1207 methyltransferase [Escherichia coli E24377A] gi|157163818|ref|YP_001461136.1| 16S ribosomal RNA m2G1207 methyltransferase [Escherichia coli HS] gi|209921836|ref|YP_002295920.1| 16S ribosomal RNA m2G1207 methyltransferase [Escherichia coli SE11] gi|218556905|ref|YP_002389819.1| 16S ribosomal RNA m2G1207 methyltransferase [Escherichia coli IAI1] gi|256020001|ref|ZP_05433866.1| 16S ribosomal RNA m2G1207 methyltransferase [Shigella sp. D9] gi|300815995|ref|ZP_07096218.1| methyltransferase small domain protein [Escherichia coli MS 107-1] gi|300824407|ref|ZP_07104520.1| methyltransferase small domain protein [Escherichia coli MS 119-7] gi|307313695|ref|ZP_07593314.1| rRNA (guanine-N(2)-)-methyltransferase [Escherichia coli W] gi|309795645|ref|ZP_07690061.1| methyltransferase small domain protein [Escherichia coli MS 145-7] gi|331680480|ref|ZP_08381139.1| ribosomal RNA small subunit methyltransferase C (rRNA(guanine-N(2)-)-methyltransferase) (16S rRNA m2G1207methyltransferase) [Escherichia coli H591] gi|332281147|ref|ZP_08393560.1| ribosomal RNA small subunit methyltransferase C [Shigella sp. D9] gi|226712937|sp|A7ZVR0|RSMC_ECO24 RecName: Full=Ribosomal RNA small subunit methyltransferase C; AltName: Full=16S rRNA m2G1207 methyltransferase; AltName: Full=rRNA (guanine-N(2)-)-methyltransferase rsmC gi|226712943|sp|B7LXT2|RSMC_ECO8A RecName: Full=Ribosomal RNA small subunit methyltransferase C; AltName: Full=16S rRNA m2G1207 methyltransferase; AltName: Full=rRNA (guanine-N(2)-)-methyltransferase rsmC gi|226712945|sp|A8A899|RSMC_ECOHS RecName: Full=Ribosomal RNA small subunit methyltransferase C; AltName: Full=16S rRNA m2G1207 methyltransferase; AltName: Full=rRNA (guanine-N(2)-)-methyltransferase rsmC gi|226712949|sp|B6I2Q2|RSMC_ECOSE RecName: Full=Ribosomal RNA small subunit methyltransferase C; AltName: Full=16S rRNA m2G1207 methyltransferase; AltName: Full=rRNA (guanine-N(2)-)-methyltransferase rsmC gi|157069498|gb|ABV08753.1| ribosomal RNA small subunit methyltransferase C [Escherichia coli HS] gi|157078523|gb|ABV18231.1| ribosomal RNA small subunit methyltransferase C [Escherichia coli E24377A] gi|209915095|dbj|BAG80169.1| ribosomal RNA small subunit methyltransferase [Escherichia coli SE11] gi|218363674|emb|CAR01333.1| 16S RNA m2G1207 methylase [Escherichia coli IAI1] gi|300523049|gb|EFK44118.1| methyltransferase small domain protein [Escherichia coli MS 119-7] gi|300531202|gb|EFK52264.1| methyltransferase small domain protein [Escherichia coli MS 107-1] gi|306906518|gb|EFN37031.1| rRNA (guanine-N(2)-)-methyltransferase [Escherichia coli W] gi|308120769|gb|EFO58031.1| methyltransferase small domain protein [Escherichia coli MS 145-7] gi|315063673|gb|ADT78000.1| 16S rRNA m(2)G1207 methyltransferase [Escherichia coli W] gi|320200514|gb|EFW75100.1| Ribosomal RNA small subunit methyltransferase C [Escherichia coli EC4100B] gi|323380246|gb|ADX52514.1| rRNA (guanine-N(2)-)-methyltransferase [Escherichia coli KO11] gi|323945890|gb|EGB41935.1| methyltransferase small domain-containing protein [Escherichia coli H120] gi|324016914|gb|EGB86133.1| methyltransferase small domain [Escherichia coli MS 117-3] gi|324118324|gb|EGC12218.1| methyltransferase small domain-containing protein [Escherichia coli E1167] gi|331071943|gb|EGI43279.1| ribosomal RNA small subunit methyltransferase C (rRNA(guanine-N(2)-)-methyltransferase) (16S rRNA m2G1207methyltransferase) [Escherichia coli H591] gi|332103499|gb|EGJ06845.1| ribosomal RNA small subunit methyltransferase C [Shigella sp. D9] Length = 343 Score = 42.4 bits (98), Expect = 0.13, Method: Compositional matrix adjust. Identities = 31/109 (28%), Positives = 52/109 (47%), Gaps = 7/109 (6%) Query: 152 IGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG 211 GR K + D D +V G T+ + + F++ + +L L T +G Sbjct: 144 FGRLEKQPV-FDADKFWGEYSVDGLTV--KTLPGVFSRDGLDVGSQLLLSTL--TPHTKG 198 Query: 212 DLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNN 258 +L++ CG G S+ ARH R+ +++ P+VEA+R +AAN V Sbjct: 199 KVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANCVEG 247 >gi|261885016|ref|ZP_06009055.1| tRNA (uracil-5-)-methyltransferase [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 36 Score = 42.0 bits (97), Expect = 0.14, Method: Composition-based stats. Identities = 15/32 (46%), Positives = 25/32 (78%) Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLL 362 +L +L TH++++ A+FDQF +T H+EC V+L Sbjct: 2 NLKLLCKTHSVDKFAIFDQFVHTNHIECAVVL 33 >gi|213423951|ref|ZP_03356931.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 355 Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust. Identities = 28/122 (22%), Positives = 52/122 (42%), Gaps = 17/122 (13%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + +L+CG G F L A ++ +EIA ++ A+ + A + + + S +F A Sbjct: 237 MWDLFCGVGGFGLHCATPQMQLTGIEIAPEAIACAKQSAAELGLTRLHFQALDSTQFATA 296 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330 + + V+PPR G+ + Q P I+Y SCN ++ + Sbjct: 297 QGETPDL---------------VLVNPPRRGIGKPLCDYLAQMAPRFIIYSSCNAQTMAQ 341 Query: 331 DL 332 D+ Sbjct: 342 DI 343 >gi|15612687|ref|NP_240990.1| hypothetical protein BH0124 [Bacillus halodurans C-125] gi|10172736|dbj|BAB03843.1| BH0124 [Bacillus halodurans C-125] Length = 201 Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust. Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 20/98 (20%) Query: 209 IQGDLLELYCGNGNFSLVLARHFDR--VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266 I+GD+L++ CG G + LAR V V++ + +++ A+ N ANHV NV + R S Sbjct: 58 IEGDVLDVGCGYGPIGISLARDGGERSVHMVDVNERAIDLAKRNATANHVKNVVVYR--S 115 Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSG 303 F Q R+ F I +PP R+G Sbjct: 116 DLFQQVQDRQ---------------FAAIVTNPPIRAG 138 >gi|74314805|ref|YP_313224.1| 16S ribosomal RNA m2G1207 methyltransferase [Shigella sonnei Ss046] gi|260871094|ref|YP_003237496.1| 16S rRNA m2G1207 methylase RsmC [Escherichia coli O111:H- str. 11128] gi|123615410|sp|Q3YU23|RSMC_SHISS RecName: Full=Ribosomal RNA small subunit methyltransferase C; AltName: Full=16S rRNA m2G1207 methyltransferase; AltName: Full=rRNA (guanine-N(2)-)-methyltransferase rsmC gi|73858282|gb|AAZ90989.1| putative enzyme [Shigella sonnei Ss046] gi|257767450|dbj|BAI38945.1| 16S rRNA m2G1207 methylase RsmC [Escherichia coli O111:H- str. 11128] gi|320175421|gb|EFW50523.1| Ribosomal RNA small subunit methyltransferase C [Shigella dysenteriae CDC 74-1112] gi|320183349|gb|EFW58203.1| Ribosomal RNA small subunit methyltransferase C [Shigella flexneri CDC 796-83] gi|323166178|gb|EFZ51956.1| ribosomal RNA small subunit methyltransferase C [Shigella sonnei 53G] gi|323176273|gb|EFZ61865.1| ribosomal RNA small subunit methyltransferase C [Escherichia coli 1180] Length = 343 Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust. Identities = 31/109 (28%), Positives = 52/109 (47%), Gaps = 7/109 (6%) Query: 152 IGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG 211 GR K + D D +V G T+ + + F++ + +L L T +G Sbjct: 144 FGRLEKQPV-FDADKFWGEYSVDGLTV--KTLPGVFSRDGLDVGSQLLLSTL--TPHTKG 198 Query: 212 DLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNN 258 +L++ CG G S+ ARH R+ +++ P+VEA+R +AAN V Sbjct: 199 KVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANCVEG 247 >gi|325499880|gb|EGC97739.1| 16S ribosomal RNA m2G1207 methyltransferase [Escherichia fergusonii ECD227] Length = 343 Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust. Identities = 30/109 (27%), Positives = 52/109 (47%), Gaps = 7/109 (6%) Query: 152 IGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG 211 GR K + D D +V G T+ + + F++ + +L L T +G Sbjct: 144 FGRLEKQPV-FDADKFWGEYSVDGLTV--KTLPGVFSRDGLDVGSQLLLSTL--TPHTKG 198 Query: 212 DLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNN 258 +L++ CG G S+ ARH R+ +++ P+VEA+R +AAN + Sbjct: 199 KVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGIEG 247 >gi|323181910|gb|EFZ67322.1| ribosomal RNA small subunit methyltransferase C [Escherichia coli 1357] Length = 333 Score = 42.0 bits (97), Expect = 0.15, Method: Compositional matrix adjust. Identities = 31/109 (28%), Positives = 52/109 (47%), Gaps = 7/109 (6%) Query: 152 IGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG 211 GR K + D D +V G T+ + + F++ + +L L T +G Sbjct: 134 FGRLEKQPV-FDADKFWGEYSVDGLTV--KTLPGVFSRDGLDVGSQLLLSTL--TPHTKG 188 Query: 212 DLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNN 258 +L++ CG G S+ ARH R+ +++ P+VEA+R +AAN V Sbjct: 189 KVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANCVEG 237 >gi|154286016|ref|XP_001543803.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1] gi|150407444|gb|EDN02985.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1] Length = 475 Score = 42.0 bits (97), Expect = 0.15, Method: Compositional matrix adjust. Identities = 29/95 (30%), Positives = 44/95 (46%), Gaps = 15/95 (15%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 LL+ Y G+G F++ L+ F L ++I+ S+EAAR N AN + N + + Sbjct: 369 LLDAYSGSGLFTVTLSPIFLSSLGIDISADSIEAARRNARANKLANTGFAAADAAAIFK- 427 Query: 273 MRREREFNRLKDIDIHSYRFKTIFV-DPPRSGLDD 306 D+ KT+ V DPPR G D+ Sbjct: 428 -------------DVPYPPDKTLLVIDPPRKGCDN 449 >gi|255282216|ref|ZP_05346771.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bryantella formatexigens DSM 14469] gi|255267164|gb|EET60369.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bryantella formatexigens DSM 14469] Length = 64 Score = 42.0 bits (97), Expect = 0.16, Method: Composition-based stats. Identities = 22/48 (45%), Positives = 28/48 (58%), Gaps = 1/48 (2%) Query: 318 ILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364 I+YISC P SL RDL++L + ER+ D FP T H+E L R Sbjct: 15 IVYISCKPTSLARDLAVLQQHGYKAERVCCVDLFPGTYHVETVCRLSR 62 >gi|56418632|ref|YP_145950.1| hypothetical protein GK0097 [Geobacillus kaustophilus HTA426] gi|56378474|dbj|BAD74382.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426] Length = 261 Score = 42.0 bits (97), Expect = 0.16, Method: Compositional matrix adjust. Identities = 29/99 (29%), Positives = 49/99 (49%), Gaps = 20/99 (20%) Query: 208 GIQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265 G+ GDLL++ CG G L LA+ F RV +++ + ++E A+ N AN ++N I + Sbjct: 118 GVAGDLLDVGCGYGPIGLALAKSFPNRRVHMIDVNERALELAQENKQANGIDNAVIYK-- 175 Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSG 303 S F++ + RF + +PP R+G Sbjct: 176 SDLFSE---------------VGEQRFAAVVTNPPIRAG 199 >gi|300939355|ref|ZP_07154023.1| methyltransferase small domain protein [Escherichia coli MS 21-1] gi|300455759|gb|EFK19252.1| methyltransferase small domain protein [Escherichia coli MS 21-1] Length = 343 Score = 42.0 bits (97), Expect = 0.17, Method: Compositional matrix adjust. Identities = 31/109 (28%), Positives = 51/109 (46%), Gaps = 7/109 (6%) Query: 152 IGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG 211 GR K + D D V G T+ + + F++ + +L L T +G Sbjct: 144 FGRLEKQPV-FDADKFWGEYNVDGLTV--KTLPGVFSRDGLDVGSQLLLSTL--TPHTKG 198 Query: 212 DLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNN 258 +L++ CG G S+ ARH R+ +++ P+VEA+R +AAN V Sbjct: 199 KVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEG 247 >gi|320195321|gb|EFW69949.1| Ribosomal RNA small subunit methyltransferase C [Escherichia coli WV_060327] Length = 343 Score = 42.0 bits (97), Expect = 0.17, Method: Compositional matrix adjust. Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 4/83 (4%) Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD--RVL 235 L + + F++ + +L L T +G +L++ CG G S+ ARH R+ Sbjct: 167 LTVKTLPGVFSRDGLDVGSQLLLSTL--TPHTKGKVLDVGCGAGVLSVAFARHSPKIRLT 224 Query: 236 AVEIAKPSVEAARYNIAANHVNN 258 +++ P+VEA+R +AAN V Sbjct: 225 LCDVSAPAVEASRATLAANSVEG 247 >gi|261417598|ref|YP_003251280.1| methyltransferase small [Geobacillus sp. Y412MC61] gi|261374055|gb|ACX76798.1| methyltransferase small [Geobacillus sp. Y412MC61] Length = 202 Score = 42.0 bits (97), Expect = 0.17, Method: Compositional matrix adjust. Identities = 29/99 (29%), Positives = 49/99 (49%), Gaps = 20/99 (20%) Query: 208 GIQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265 G+ GDLL++ CG G L LA+ F RV +++ + ++E A+ N AN ++N I + Sbjct: 59 GVAGDLLDVGCGYGPIGLALAKSFPNRRVHMIDVNERALELAQENKQANGIDNAVIYK-- 116 Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSG 303 S F++ + RF + +PP R+G Sbjct: 117 SDLFSE---------------VGEQRFAAVVTNPPIRAG 140 >gi|301022273|ref|ZP_07186171.1| methyltransferase small domain protein [Escherichia coli MS 196-1] gi|299881323|gb|EFI89534.1| methyltransferase small domain protein [Escherichia coli MS 196-1] Length = 343 Score = 42.0 bits (97), Expect = 0.18, Method: Compositional matrix adjust. Identities = 30/109 (27%), Positives = 52/109 (47%), Gaps = 7/109 (6%) Query: 152 IGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG 211 GR K + D D +V G T+ + + F++ + ++ L T +G Sbjct: 144 FGRLEKQPV-FDADKFWGEYSVDGLTV--KTLPGVFSRDGLDVGSQLMLSTL--TPHTKG 198 Query: 212 DLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNN 258 +L++ CG G S+ ARH R+ +++ P+VEA+R +AAN V Sbjct: 199 KVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEG 247 >gi|26251256|ref|NP_757296.1| 16S ribosomal RNA m2G1207 methyltransferase [Escherichia coli CFT073] gi|227885143|ref|ZP_04002948.1| 16S ribosomal RNA m2G1207 methyltransferase [Escherichia coli 83972] gi|300980808|ref|ZP_07175189.1| methyltransferase small domain protein [Escherichia coli MS 45-1] gi|301048334|ref|ZP_07195364.1| methyltransferase small domain protein [Escherichia coli MS 185-1] gi|331661001|ref|ZP_08361933.1| ribosomal RNA small subunit methyltransferase C (rRNA(guanine-N(2)-)-methyltransferase) (16S rRNA m2G1207methyltransferase) [Escherichia coli TA206] gi|81472610|sp|Q8FA64|RSMC_ECOL6 RecName: Full=Ribosomal RNA small subunit methyltransferase C; AltName: Full=16S rRNA m2G1207 methyltransferase; AltName: Full=rRNA (guanine-N(2)-)-methyltransferase rsmC gi|26111689|gb|AAN83870.1|AE016772_48 Ribosomal RNA small subunit methyltransferase C [Escherichia coli CFT073] gi|227837972|gb|EEJ48438.1| 16S ribosomal RNA m2G1207 methyltransferase [Escherichia coli 83972] gi|300299794|gb|EFJ56179.1| methyltransferase small domain protein [Escherichia coli MS 185-1] gi|300409125|gb|EFJ92663.1| methyltransferase small domain protein [Escherichia coli MS 45-1] gi|307556603|gb|ADN49378.1| 16S RNA G1207 methylase RsmC [Escherichia coli ABU 83972] gi|315293340|gb|EFU52692.1| methyltransferase small domain protein [Escherichia coli MS 153-1] gi|315298365|gb|EFU57620.1| methyltransferase small domain protein [Escherichia coli MS 16-3] gi|331052043|gb|EGI24082.1| ribosomal RNA small subunit methyltransferase C (rRNA(guanine-N(2)-)-methyltransferase) (16S rRNA m2G1207methyltransferase) [Escherichia coli TA206] Length = 343 Score = 41.6 bits (96), Expect = 0.18, Method: Compositional matrix adjust. Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 4/83 (4%) Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD--RVL 235 L + + F++ + +L L T +G +L++ CG G S+ ARH R+ Sbjct: 167 LTVKTLPGVFSRDGLDVGSQLLLSTL--TPHTKGKVLDVGCGAGVLSVAFARHSPKIRLT 224 Query: 236 AVEIAKPSVEAARYNIAANHVNN 258 +++ P+VEA+R +AAN V Sbjct: 225 LCDVSAPAVEASRATLAANSVEG 247 >gi|256850958|ref|ZP_05556347.1| RsmD family RNA methyltransferase [Lactobacillus jensenii 27-2-CHN] gi|260661172|ref|ZP_05862086.1| RsmD family RNA methyltransferase [Lactobacillus jensenii 115-3-CHN] gi|282934127|ref|ZP_06339405.1| RNA methyltransferase, RsmD family [Lactobacillus jensenii 208-1] gi|256616020|gb|EEU21208.1| RsmD family RNA methyltransferase [Lactobacillus jensenii 27-2-CHN] gi|260548109|gb|EEX24085.1| RsmD family RNA methyltransferase [Lactobacillus jensenii 115-3-CHN] gi|281301741|gb|EFA94007.1| RNA methyltransferase, RsmD family [Lactobacillus jensenii 208-1] Length = 183 Score = 41.6 bits (96), Expect = 0.18, Method: Compositional matrix adjust. Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 14/92 (15%) Query: 211 GDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVN-NVKIVRMSSKE 268 G +L+LY G+G ++ ++R FD + +I +V+ + N+A H ++ +MS K Sbjct: 43 GAVLDLYGGSGALAIEAVSRGFDHAVITDINYAAVQIIKKNVALTHEEEKFEVFKMSDKV 102 Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300 LK ++ H Y F +F+DPP Sbjct: 103 ------------ALKFLNEHDYHFDIVFLDPP 122 >gi|330876401|gb|EGH10550.1| 23S rRNA m(5)U1939 methyltransferase [Pseudomonas syringae pv. glycinea str. race 4] Length = 49 Score = 41.6 bits (96), Expect = 0.18, Method: Compositional matrix adjust. Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 1/45 (2%) Query: 319 LYISCNPDSLCRD-LSILSTTHTIERLALFDQFPYTRHMECGVLL 362 LY+SCNP +L RD + ++S + ++R + D FP T H+E L Sbjct: 1 LYVSCNPATLARDTVELISQGYRLKRAGILDMFPQTAHVEAMALF 45 >gi|315616262|gb|EFU96881.1| ribosomal RNA small subunit methyltransferase C [Escherichia coli 3431] Length = 343 Score = 41.6 bits (96), Expect = 0.18, Method: Compositional matrix adjust. Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 4/83 (4%) Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD--RVL 235 L + + F++ + +L L T +G +L++ CG G S+ ARH R+ Sbjct: 167 LTVKTLPGVFSRDGLDVGSQLLLSTL--TPHTKGKVLDVGCGAGVLSVAFARHSPKIRLT 224 Query: 236 AVEIAKPSVEAARYNIAANHVNN 258 +++ P+VEA+R +AAN V Sbjct: 225 LCDVSAPAVEASRATLAANGVEG 247 >gi|145594035|ref|YP_001158332.1| deoxyribonuclease [Salinispora tropica CNB-440] gi|145303372|gb|ABP53954.1| deoxyribonuclease/rho motif-related TRAM [Salinispora tropica CNB-440] Length = 412 Score = 41.6 bits (96), Expect = 0.19, Method: Compositional matrix adjust. Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 10/75 (13%) Query: 295 IFVDPPRSGLDDATVGMVQAYPH-----ILYISCNPDSLCRDL-SILSTTHTIERLALFD 348 + +DPPRSG A G+V+A + Y++C+P + RD+ + L FD Sbjct: 333 VVLDPPRSG---AGAGVVRAVAGTGARAVAYVACDPAAFARDVRGFAELGWRLTALRGFD 389 Query: 349 QFPYTRHME-CGVLL 362 FP T+H+E G+LL Sbjct: 390 LFPMTQHVELVGLLL 404 >gi|331666038|ref|ZP_08366932.1| ribosomal RNA small subunit methyltransferase C (rRNA(guanine-N(2)-)-methyltransferase) (16S rRNA m2G1207methyltransferase) [Escherichia coli TA143] gi|331057089|gb|EGI29083.1| ribosomal RNA small subunit methyltransferase C (rRNA(guanine-N(2)-)-methyltransferase) (16S rRNA m2G1207methyltransferase) [Escherichia coli TA143] Length = 343 Score = 41.6 bits (96), Expect = 0.19, Method: Compositional matrix adjust. Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 4/83 (4%) Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD--RVL 235 L + + F++ + +L L T +G +L++ CG G S+ ARH R+ Sbjct: 167 LTVKTLPGVFSRDGLDVGSQLLLSTL--TPHTKGKVLDVGCGAGVLSVAFARHSPKIRLT 224 Query: 236 AVEIAKPSVEAARYNIAANHVNN 258 +++ P+VEA+R +AAN V Sbjct: 225 LCDVSAPAVEASRATLAANGVEG 247 >gi|227330267|ref|ZP_03834291.1| tRNA (uracil-5-)-methyltransferase [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 34 Score = 41.6 bits (96), Expect = 0.19, Method: Composition-based stats. Identities = 19/32 (59%), Positives = 25/32 (78%), Gaps = 2/32 (6%) Query: 301 RSGLDDATVGMVQAYPHILYISCNPDSLCRDL 332 R+G + TV +VQAYP ILYISCNP++L +L Sbjct: 4 RTGCE--TVKLVQAYPRILYISCNPETLSNNL 33 >gi|215489682|ref|YP_002332113.1| 16S ribosomal RNA m2G1207 methyltransferase [Escherichia coli O127:H6 str. E2348/69] gi|215267754|emb|CAS12216.1| 16S rRNA m2G1207 methylase [Escherichia coli O127:H6 str. E2348/69] Length = 343 Score = 41.6 bits (96), Expect = 0.19, Method: Compositional matrix adjust. Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 4/83 (4%) Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD--RVL 235 L + + F++ + +L L T +G +L++ CG G S+ ARH R+ Sbjct: 167 LTVKTLPGVFSRDGLDVGSQLLLSTL--TPHTKGKVLDVGCGAGVLSVAFARHSPKIRLT 224 Query: 236 AVEIAKPSVEAARYNIAANHVNN 258 +++ P+VEA+R +AAN V Sbjct: 225 LCDVSAPAVEASRATLAANGVEG 247 >gi|193070621|ref|ZP_03051559.1| ribosomal RNA small subunit methyltransferase C [Escherichia coli E110019] gi|192956104|gb|EDV86569.1| ribosomal RNA small subunit methyltransferase C [Escherichia coli E110019] Length = 343 Score = 41.6 bits (96), Expect = 0.19, Method: Compositional matrix adjust. Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 4/83 (4%) Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD--RVL 235 L + + F++ + +L L T +G +L++ CG G S+ ARH R+ Sbjct: 167 LTVKTLPGVFSRDGLDVGSQLLLSTL--TPHTKGKVLDVGCGAGVLSVAFARHSPKIRLT 224 Query: 236 AVEIAKPSVEAARYNIAANHVNN 258 +++ P+VEA+R +AAN V Sbjct: 225 LCDVSAPAVEASRATLAANGVEG 247 >gi|219669847|ref|YP_002460282.1| methyltransferase [Desulfitobacterium hafniense DCB-2] gi|219540107|gb|ACL21846.1| methyltransferase [Desulfitobacterium hafniense DCB-2] Length = 180 Score = 41.6 bits (96), Expect = 0.19, Method: Compositional matrix adjust. Identities = 35/148 (23%), Positives = 61/148 (41%), Gaps = 24/148 (16%) Query: 213 LLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271 +L+L+ G GN +L L+R + +E ++ + + R NI + +++ M + + + Sbjct: 45 VLDLFAGTGNLALEALSRGAKEAVLIEKSRTAQQIIRENIDHMGIEQARLIGMDAFAYLE 104 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYISCNPDSLCRD 331 R ER F IF+DPP G+V+ +L C L Sbjct: 105 QHREER--------------FDLIFIDPPYH------QGLVEKSLKLLAAPCR---LTDS 141 Query: 332 LSILSTTHTIERLALFDQFPYTRHMECG 359 I++ T E L +D F + E G Sbjct: 142 GVIIAETAKDENLESYDPFEIKKTGEYG 169 >gi|321477153|gb|EFX88112.1| hypothetical protein DAPPUDRAFT_221341 [Daphnia pulex] Length = 275 Score = 41.6 bits (96), Expect = 0.20, Method: Compositional matrix adjust. Identities = 26/100 (26%), Positives = 51/100 (51%), Gaps = 9/100 (9%) Query: 169 ERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA 228 E +A R + +R +P A + ++E++ G ++ CG+G SL+L+ Sbjct: 11 ESSVLASRYIDFR------PKPPARLADRIVEFLKEKYTGDLSVCVDAGCGSGQCSLLLS 64 Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268 HF +VLA +I+ +E A+ + NH N++ V +++ Sbjct: 65 SHFQKVLATDISASQIEVAK---SQNHPPNIEFVASPAEQ 101 >gi|16132189|ref|NP_418788.1| 16S rRNA m(2)G1207 methyltransferase [Escherichia coli str. K-12 substr. MG1655] gi|82779621|ref|YP_405970.1| 16S ribosomal RNA m2G1207 methyltransferase [Shigella dysenteriae Sd197] gi|89111078|ref|AP_004858.1| 16S RNA m2G1207 methylase [Escherichia coli str. K-12 substr. W3110] gi|170083756|ref|YP_001733076.1| 16S RNA m2G1207 methylase [Escherichia coli str. K-12 substr. DH10B] gi|218561546|ref|YP_002394459.1| 16S ribosomal RNA m2G1207 methyltransferase [Escherichia coli S88] gi|238903457|ref|YP_002929253.1| 16S rRNA m2G1207 methylase [Escherichia coli BW2952] gi|253775000|ref|YP_003037831.1| 16S ribosomal RNA m2G1207 methyltransferase [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254164296|ref|YP_003047406.1| 16S ribosomal RNA m2G1207 methyltransferase [Escherichia coli B str. REL606] gi|293417843|ref|ZP_06660465.1| rsmC [Escherichia coli B185] gi|309787410|ref|ZP_07682022.1| ribosomal RNA small subunit methyltransferase C [Shigella dysenteriae 1617] gi|312970060|ref|ZP_07784242.1| ribosomal RNA small subunit methyltransferase C [Escherichia coli 1827-70] gi|732118|sp|P39406|RSMC_ECOLI RecName: Full=Ribosomal RNA small subunit methyltransferase C; AltName: Full=16S rRNA m2G1207 methyltransferase; AltName: Full=rRNA (guanine-N(2)-)-methyltransferase rsmC gi|123560843|sp|Q327M6|RSMC_SHIDS RecName: Full=Ribosomal RNA small subunit methyltransferase C; AltName: Full=16S rRNA m2G1207 methyltransferase; AltName: Full=rRNA (guanine-N(2)-)-methyltransferase rsmC gi|226712938|sp|B7MNC1|RSMC_ECO45 RecName: Full=Ribosomal RNA small subunit methyltransferase C; AltName: Full=16S rRNA m2G1207 methyltransferase; AltName: Full=rRNA (guanine-N(2)-)-methyltransferase rsmC gi|226712944|sp|B1XFI0|RSMC_ECODH RecName: Full=Ribosomal RNA small subunit methyltransferase C; AltName: Full=16S rRNA m2G1207 methyltransferase; AltName: Full=rRNA (guanine-N(2)-)-methyltransferase rsmC gi|537211|gb|AAA97267.1| ORF_f343b [Escherichia coli str. K-12 substr. MG1655] gi|1790830|gb|AAC77324.1| 16S rRNA m(2)G1207 methyltransferase [Escherichia coli str. K-12 substr. MG1655] gi|81243769|gb|ABB64479.1| putative enzyme [Shigella dysenteriae Sd197] gi|85677109|dbj|BAE78359.1| 16S RNA m2G1207 methylase [Escherichia coli str. K12 substr. W3110] gi|169891591|gb|ACB05298.1| 16S RNA m2G1207 methylase [Escherichia coli str. K-12 substr. DH10B] gi|218368315|emb|CAR06134.1| 16S RNA m2G1207 methylase [Escherichia coli S88] gi|238859733|gb|ACR61731.1| 16S rRNA m2G1207 methylase [Escherichia coli BW2952] gi|242379893|emb|CAQ34729.1| 16S rRNA m[2]G1207 methyltransferase [Escherichia coli BL21(DE3)] gi|253326044|gb|ACT30646.1| rRNA (guanine-N(2)-)-methyltransferase [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253976199|gb|ACT41870.1| 16S ribosomal RNA m2G1207 methyltransferase [Escherichia coli B str. REL606] gi|253980356|gb|ACT46026.1| 16S ribosomal RNA m2G1207 methyltransferase [Escherichia coli BL21(DE3)] gi|260450819|gb|ACX41241.1| rRNA (guanine-N(2)-)-methyltransferase [Escherichia coli DH1] gi|291430561|gb|EFF03559.1| rsmC [Escherichia coli B185] gi|308924988|gb|EFP70483.1| ribosomal RNA small subunit methyltransferase C [Shigella dysenteriae 1617] gi|310337558|gb|EFQ02669.1| ribosomal RNA small subunit methyltransferase C [Escherichia coli 1827-70] gi|315138923|dbj|BAJ46082.1| 16S ribosomal RNA m2G1207 methyltransferase [Escherichia coli DH1] gi|323171382|gb|EFZ57029.1| ribosomal RNA small subunit methyltransferase C [Escherichia coli LT-68] Length = 343 Score = 41.6 bits (96), Expect = 0.20, Method: Compositional matrix adjust. Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 4/83 (4%) Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD--RVL 235 L + + F++ + +L L T +G +L++ CG G S+ ARH R+ Sbjct: 167 LTVKTLPGVFSRDGLDVGSQLLLSTL--TPHTKGKVLDVGCGAGVLSVAFARHSPKIRLT 224 Query: 236 AVEIAKPSVEAARYNIAANHVNN 258 +++ P+VEA+R +AAN V Sbjct: 225 LCDVSAPAVEASRATLAANGVEG 247 >gi|116624370|ref|YP_826526.1| type 11 methyltransferase [Candidatus Solibacter usitatus Ellin6076] gi|116227532|gb|ABJ86241.1| Methyltransferase type 11 [Candidatus Solibacter usitatus Ellin6076] Length = 246 Score = 41.6 bits (96), Expect = 0.20, Method: Compositional matrix adjust. Identities = 26/88 (29%), Positives = 47/88 (53%), Gaps = 4/88 (4%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT-- 270 +L+L CG G + L++HFD VLA++I++P + AR +A ++ ++ S+ EF Sbjct: 60 VLDLGCGAGLLAQELSKHFDSVLAIDISEPMLAIARAKRSAPNI-EYRLADASTAEFEGE 118 Query: 271 -QAMRREREFNRLKDIDIHSYRFKTIFV 297 A+ F+ + D+ RFK + Sbjct: 119 FDAVVSHTTFHHIADVAGTITRFKPMLA 146 >gi|331645067|ref|ZP_08346178.1| ribosomal RNA small subunit methyltransferase C (rRNA(guanine-N(2)-)-methyltransferase) (16S rRNA m2G1207methyltransferase) [Escherichia coli M605] gi|330909815|gb|EGH38325.1| ribosomal RNA small subunit methyltransferase C [Escherichia coli AA86] gi|331045824|gb|EGI17943.1| ribosomal RNA small subunit methyltransferase C (rRNA(guanine-N(2)-)-methyltransferase) (16S rRNA m2G1207methyltransferase) [Escherichia coli M605] Length = 343 Score = 41.6 bits (96), Expect = 0.20, Method: Compositional matrix adjust. Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 4/83 (4%) Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD--RVL 235 L + + F++ + +L L T +G +L++ CG G S+ ARH R+ Sbjct: 167 LTVKTLPGVFSRDGLDVGSQLLLSTL--TPHTKGKVLDVGCGAGVLSVAFARHSPKIRLT 224 Query: 236 AVEIAKPSVEAARYNIAANHVNN 258 +++ P+VEA+R +AAN V Sbjct: 225 LCDVSAPAVEASRATLAANSVEG 247 >gi|218703063|ref|YP_002410692.1| 16S ribosomal RNA m2G1207 methyltransferase [Escherichia coli IAI39] gi|226712941|sp|B7NVD9|RSMC_ECO7I RecName: Full=Ribosomal RNA small subunit methyltransferase C; AltName: Full=16S rRNA m2G1207 methyltransferase; AltName: Full=rRNA (guanine-N(2)-)-methyltransferase rsmC gi|218373049|emb|CAR20939.1| 16S RNA m2G1207 methylase [Escherichia coli IAI39] Length = 343 Score = 41.6 bits (96), Expect = 0.20, Method: Compositional matrix adjust. Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 4/83 (4%) Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD--RVL 235 L + + F++ + +L L T +G +L++ CG G S+ ARH R+ Sbjct: 167 LTVKTLPGVFSRDGLDVGSQLLLSTL--TPHTKGKVLDVGCGAGVLSVAFARHSPKIRLT 224 Query: 236 AVEIAKPSVEAARYNIAANHVNN 258 +++ P+VEA+R +AAN V Sbjct: 225 LCDVSAPAVEASRATLAANSVEG 247 >gi|297528473|ref|YP_003669748.1| methyltransferase small [Geobacillus sp. C56-T3] gi|319765256|ref|YP_004130757.1| methyltransferase small [Geobacillus sp. Y412MC52] gi|297251725|gb|ADI25171.1| methyltransferase small [Geobacillus sp. C56-T3] gi|317110122|gb|ADU92614.1| methyltransferase small [Geobacillus sp. Y412MC52] Length = 200 Score = 41.6 bits (96), Expect = 0.21, Method: Compositional matrix adjust. Identities = 29/99 (29%), Positives = 49/99 (49%), Gaps = 20/99 (20%) Query: 208 GIQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265 G+ GDLL++ CG G L LA+ F RV +++ + ++E A+ N AN ++N I + Sbjct: 57 GVAGDLLDVGCGYGPIGLALAKSFPNRRVHMIDVNERALELAQENKQANGIDNAVIYK-- 114 Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSG 303 S F++ + RF + +PP R+G Sbjct: 115 SDLFSE---------------VGEQRFAAVVTNPPIRAG 138 >gi|218708048|ref|YP_002415567.1| 16S ribosomal RNA m2G1207 methyltransferase [Escherichia coli UMN026] gi|293403039|ref|ZP_06647136.1| ribosomal RNA small subunit methyltransferase C [Escherichia coli FVEC1412] gi|298378566|ref|ZP_06988450.1| ribosomal RNA small subunit methyltransferase C [Escherichia coli FVEC1302] gi|300899328|ref|ZP_07117593.1| methyltransferase small domain protein [Escherichia coli MS 198-1] gi|301027007|ref|ZP_07190391.1| methyltransferase small domain protein [Escherichia coli MS 69-1] gi|226712948|sp|B7NH38|RSMC_ECOLU RecName: Full=Ribosomal RNA small subunit methyltransferase C; AltName: Full=16S rRNA m2G1207 methyltransferase; AltName: Full=rRNA (guanine-N(2)-)-methyltransferase rsmC gi|218435145|emb|CAR16103.1| 16S RNA m2G1207 methylase [Escherichia coli UMN026] gi|291429954|gb|EFF02968.1| ribosomal RNA small subunit methyltransferase C [Escherichia coli FVEC1412] gi|298280900|gb|EFI22401.1| ribosomal RNA small subunit methyltransferase C [Escherichia coli FVEC1302] gi|300357063|gb|EFJ72933.1| methyltransferase small domain protein [Escherichia coli MS 198-1] gi|300395231|gb|EFJ78769.1| methyltransferase small domain protein [Escherichia coli MS 69-1] Length = 343 Score = 41.6 bits (96), Expect = 0.21, Method: Compositional matrix adjust. Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 4/83 (4%) Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD--RVL 235 L + + F++ + +L L T +G +L++ CG G S+ ARH R+ Sbjct: 167 LTVKTLPGVFSRDGLDVGSQLLLSTL--TPHTKGKVLDVGCGAGVLSVAFARHSPKIRLT 224 Query: 236 AVEIAKPSVEAARYNIAANHVNN 258 +++ P+VEA+R +AAN V Sbjct: 225 LCDVSAPAVEASRATLAANGVEG 247 >gi|89895418|ref|YP_518905.1| hypothetical protein DSY2672 [Desulfitobacterium hafniense Y51] gi|89334866|dbj|BAE84461.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 180 Score = 41.6 bits (96), Expect = 0.21, Method: Compositional matrix adjust. Identities = 36/148 (24%), Positives = 62/148 (41%), Gaps = 24/148 (16%) Query: 213 LLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271 +L+L+ G GN +L L+R + +E ++ + + R NI V +++ M + + + Sbjct: 45 VLDLFAGTGNLALEALSRGAKEAVLIEKSRTAQQIIRENIDHMGVEQARLIGMDAFAYLE 104 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYISCNPDSLCRD 331 R ER F IF+DPP G+V+ +L +P L Sbjct: 105 QHREER--------------FDLIFIDPPYH------QGLVEKSLKLL---ADPCRLTYS 141 Query: 332 LSILSTTHTIERLALFDQFPYTRHMECG 359 I++ T E L +D F + E G Sbjct: 142 GVIIAETAKDENLESYDPFEIKKTGEYG 169 >gi|297205840|ref|ZP_06923235.1| possible rRNA (guanine-N(2)-)-methyltransferase [Lactobacillus jensenii JV-V16] gi|297148966|gb|EFH29264.1| possible rRNA (guanine-N(2)-)-methyltransferase [Lactobacillus jensenii JV-V16] Length = 183 Score = 41.6 bits (96), Expect = 0.21, Method: Compositional matrix adjust. Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 14/92 (15%) Query: 211 GDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHV-NNVKIVRMSSKE 268 G +L+LY G+G ++ ++R FD + +I +V+ + N+A H ++ +MS K Sbjct: 43 GAVLDLYGGSGALAIEAVSRGFDHAVITDINYAAVQIIKKNVALTHEEGKFEVFKMSDK- 101 Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300 A+R E H Y F +F+DPP Sbjct: 102 --VALRFLNE---------HDYHFDIVFLDPP 122 >gi|191167391|ref|ZP_03029206.1| ribosomal RNA small subunit methyltransferase C [Escherichia coli B7A] gi|256025289|ref|ZP_05439154.1| 16S ribosomal RNA m2G1207 methyltransferase [Escherichia sp. 4_1_40B] gi|190902531|gb|EDV62265.1| ribosomal RNA small subunit methyltransferase C [Escherichia coli B7A] Length = 343 Score = 41.6 bits (96), Expect = 0.21, Method: Compositional matrix adjust. Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 4/83 (4%) Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD--RVL 235 L + + F++ + +L L T +G +L++ CG G S+ ARH R+ Sbjct: 167 LTVKTLPGVFSRDGLDVGSQLLLSTL--TPHTKGKVLDVGCGAGVLSVAFARHSPKIRLT 224 Query: 236 AVEIAKPSVEAARYNIAANHVNN 258 +++ P+VEA+R +AAN V Sbjct: 225 LCDVSAPAVEASRATLAANGVEG 247 >gi|194439306|ref|ZP_03071385.1| ribosomal RNA small subunit methyltransferase C [Escherichia coli 101-1] gi|194421788|gb|EDX37796.1| ribosomal RNA small subunit methyltransferase C [Escherichia coli 101-1] gi|323969515|gb|EGB64807.1| methyltransferase small domain-containing protein [Escherichia coli TA007] Length = 343 Score = 41.6 bits (96), Expect = 0.22, Method: Compositional matrix adjust. Identities = 30/109 (27%), Positives = 52/109 (47%), Gaps = 7/109 (6%) Query: 152 IGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG 211 GR K + D D +V G T+ + + F++ + +L L T +G Sbjct: 144 FGRLEKQPV-FDADKFWGEYSVDGLTV--KTLPGVFSRDGLDVGSQLLLSTL--TPHTKG 198 Query: 212 DLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNN 258 +L++ CG G S+ +RH R+ +++ P+VEA+R +AAN V Sbjct: 199 KVLDVGCGAGVLSVAFSRHSPKIRLTLCDVSAPAVEASRATLAANGVEG 247 >gi|295397937|ref|ZP_06807994.1| methyltransferase domain protein [Aerococcus viridans ATCC 11563] gi|294973822|gb|EFG49592.1| methyltransferase domain protein [Aerococcus viridans ATCC 11563] Length = 217 Score = 41.6 bits (96), Expect = 0.22, Method: Compositional matrix adjust. Identities = 26/100 (26%), Positives = 49/100 (49%), Gaps = 2/100 (2%) Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNG 221 L D+ + R+ ++ F++ N ++ L + + GDLL+L G G Sbjct: 26 LGHDFKQYETVIFDRSFTFKTDSGVFSRDNLDFGTRVMLEALDLDQLVPGDLLDLGAGYG 85 Query: 222 NFSLVLARHF-DRVL-AVEIAKPSVEAARYNIAANHVNNV 259 +++ DR + V+I++ ++ A+ N AANHV+NV Sbjct: 86 PVGVIMGTMLPDRAIYGVDISERAIGLAKDNAAANHVDNV 125 >gi|90420130|ref|ZP_01228038.1| putative RNA methyltransferase [Aurantimonas manganoxydans SI85-9A1] gi|90335464|gb|EAS49214.1| putative RNA methyltransferase [Aurantimonas manganoxydans SI85-9A1] Length = 408 Score = 41.6 bits (96), Expect = 0.22, Method: Compositional matrix adjust. Identities = 44/154 (28%), Positives = 67/154 (43%), Gaps = 15/154 (9%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + +L+ G+G F+L LA RV AVE EAA ++ + E Sbjct: 268 VADLFSGSGTFALRLAVQ-SRVHAVE-----SEAAPLAAMTAAWRTRPGLKPLTTERRDL 321 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA-YPHILYISCNPDSLCRD 331 RR LK D + DPPR+G + + + + + +SCNP ++ RD Sbjct: 322 YRRPIPAKELKAYD-------GLVFDPPRAGAEAVSQEIAASKISRVAAVSCNPVTMARD 374 Query: 332 LSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364 L IL + + DQF ++RH+E LL R Sbjct: 375 LRILVDGGFRLVEVTPVDQFLWSRHVEAVALLER 408 >gi|151567849|pdb|2PJD|A Chain A, Crystal Structure Of 16s Rrna Methyltransferase Rsmc Length = 343 Score = 41.6 bits (96), Expect = 0.22, Method: Compositional matrix adjust. Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 4/83 (4%) Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD--RVL 235 L + + F++ + +L L T +G +L++ CG G S+ ARH R+ Sbjct: 167 LTVKTLPGVFSRDGLDVGSQLLLSTL--TPHTKGKVLDVGCGAGVLSVAFARHSPKIRLT 224 Query: 236 AVEIAKPSVEAARYNIAANHVNN 258 +++ P+VEA+R +AAN V Sbjct: 225 LCDVSAPAVEASRATLAANGVEG 247 >gi|90422657|ref|YP_531027.1| RNA methyltransferase [Rhodopseudomonas palustris BisB18] gi|90104671|gb|ABD86708.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Rhodopseudomonas palustris BisB18] Length = 412 Score = 41.2 bits (95), Expect = 0.23, Method: Compositional matrix adjust. Identities = 41/150 (27%), Positives = 66/150 (44%), Gaps = 22/150 (14%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +++L+CG G F+L LA +VLA + ++P+ AA ++ + E Sbjct: 272 IVDLFCGVGPFALRLAAKA-KVLAYD-SEPAAIAALQA-----AAKTPGLKPLTAEVRDL 324 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSG----LDDATVGMVQAYPHILYISCNPDSL 328 RR L+D+D + DPPR G + G V ++ +SCN + Sbjct: 325 FRRPLVTQELRDVD-------AVVFDPPRQGAQAQAEKLAAGKVAT---VVAVSCNAATF 374 Query: 329 CRDLSIL-STTHTIERLALFDQFPYTRHME 357 RD IL + I + DQF +T H+E Sbjct: 375 ARDARILIDGGYQIGTVTPVDQFRHTPHVE 404 >gi|4432832|gb|AAD20681.1| putative RNA methyltransferase [Arabidopsis thaliana] Length = 850 Score = 41.2 bits (95), Expect = 0.24, Method: Compositional matrix adjust. Identities = 19/43 (44%), Positives = 29/43 (67%), Gaps = 5/43 (11%) Query: 291 RFKTI--FVDPPRSGLDDATVGMVQAYP---HILYISCNPDSL 328 +FK + VDPPRSGL A + ++ +P ++YISCNP++L Sbjct: 736 QFKNVVAIVDPPRSGLHPAVIKALRTHPRLKRLVYISCNPETL 778 >gi|297822425|ref|XP_002879095.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297324934|gb|EFH55354.1| predicted protein [Arabidopsis lyrata subsp. lyrata] Length = 818 Score = 41.2 bits (95), Expect = 0.25, Method: Compositional matrix adjust. Identities = 19/43 (44%), Positives = 29/43 (67%), Gaps = 5/43 (11%) Query: 291 RFKTI--FVDPPRSGLDDATVGMVQAYP---HILYISCNPDSL 328 +FK + VDPPRSGL A + ++ +P ++YISCNP++L Sbjct: 704 QFKNVVAIVDPPRSGLHPAVIKALRTHPRLKRLVYISCNPETL 746 >gi|303240625|ref|ZP_07327140.1| Methyltransferase type 11 [Acetivibrio cellulolyticus CD2] gi|302591862|gb|EFL61595.1| Methyltransferase type 11 [Acetivibrio cellulolyticus CD2] Length = 226 Score = 41.2 bits (95), Expect = 0.27, Method: Compositional matrix adjust. Identities = 14/56 (25%), Positives = 38/56 (67%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268 +L++ CG+GN S++L+++F+ V+ ++I+ ++ A + A + N++ + M +++ Sbjct: 42 VLDIGCGSGNKSILLSKYFEHVIGIDISDSFLQIAEHKKNAKGIKNIQFINMDAEK 97 >gi|85859442|ref|YP_461644.1| adenine-specific methyltransferase [Syntrophus aciditrophicus SB] gi|85722533|gb|ABC77476.1| adenine-specific methyltransferase [Syntrophus aciditrophicus SB] Length = 190 Score = 41.2 bits (95), Expect = 0.27, Method: Compositional matrix adjust. Identities = 35/111 (31%), Positives = 50/111 (45%), Gaps = 15/111 (13%) Query: 212 DLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAA-NHVNNVKIVRMSSKEF 269 + L+LY G GN + L+R D V+ VE V + + N+ +I RM E Sbjct: 43 EFLDLYAGTGNVGMEALSRGADVVVFVEKISVLVTSLKRNLEQFGFQGRYRIFRM---EV 99 Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGMVQAYPHIL 319 +A+ E F IF DPP R G D T+G+++ YP IL Sbjct: 100 EKAVAHLAE---------GGMCFDLIFADPPYRKGFVDRTIGLIKDYPSIL 141 >gi|77919821|ref|YP_357636.1| SAM-dependent methyltransferase [Pelobacter carbinolicus DSM 2380] gi|77545904|gb|ABA89466.1| SAM-dependent methyltransferase [Pelobacter carbinolicus DSM 2380] Length = 249 Score = 41.2 bits (95), Expect = 0.28, Method: Compositional matrix adjust. Identities = 29/93 (31%), Positives = 47/93 (50%), Gaps = 5/93 (5%) Query: 189 QPNAGINVHMLEWVLAATKGIQG--DLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSV 244 Q G + +L A G QG + +L CG+G L+L+R D R++ VEI + S Sbjct: 25 QKKGGYRFSLDPVLLCAFAGFQGVERICDLGCGSGVIPLILSRTSDARRIVGVEIQEESA 84 Query: 245 EAARYNIAANHVNN-VKIVRMSSKEFTQAMRRE 276 + AR ++ N V + V+IVR + + + E Sbjct: 85 DRARRSVLLNGVQDRVEIVRRDVRSVREVLAAE 117 >gi|154251239|ref|YP_001412063.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Parvibaculum lavamentivorans DS-1] gi|154155189|gb|ABS62406.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Parvibaculum lavamentivorans DS-1] Length = 415 Score = 41.2 bits (95), Expect = 0.29, Method: Compositional matrix adjust. Identities = 45/175 (25%), Positives = 70/175 (40%), Gaps = 13/175 (7%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 +F QP ++ V A G + +L+ G G FS LAR V AVE Sbjct: 244 GAFLQPTREGEAALVRLV-AQGVGKSVRIADLFAGCGTFSASLARSAT-VHAVE-----G 296 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 E+A A V + S R+ R + F + DPPR+G Sbjct: 297 ESASLAALARAVRE----QGPSLGLKPVTHETRDLARRPLLRSELDSFDAVVFDPPRAGA 352 Query: 305 DDATVGMVQA-YPHILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHME 357 + ++ P + +SCNP + RD ++L + + L DQF ++ H+E Sbjct: 353 AAQAEEIARSEVPVVAAVSCNPATFARDARTLLDGGYALSELTPVDQFLWSPHIE 407 >gi|238855245|ref|ZP_04645564.1| RNA methyltransferase, RsmD family [Lactobacillus jensenii 269-3] gi|260664605|ref|ZP_05865457.1| RsmD family RNA methyltransferase [Lactobacillus jensenii SJ-7A-US] gi|282932462|ref|ZP_06337887.1| RNA methyltransferase, RsmD family [Lactobacillus jensenii 208-1] gi|313471935|ref|ZP_07812427.1| RNA methyltransferase, RsmD family [Lactobacillus jensenii 1153] gi|238832137|gb|EEQ24455.1| RNA methyltransferase, RsmD family [Lactobacillus jensenii 269-3] gi|239529139|gb|EEQ68140.1| RNA methyltransferase, RsmD family [Lactobacillus jensenii 1153] gi|260561670|gb|EEX27642.1| RsmD family RNA methyltransferase [Lactobacillus jensenii SJ-7A-US] gi|281303411|gb|EFA95588.1| RNA methyltransferase, RsmD family [Lactobacillus jensenii 208-1] Length = 183 Score = 41.2 bits (95), Expect = 0.30, Method: Compositional matrix adjust. Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 14/92 (15%) Query: 211 GDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVN-NVKIVRMSSKE 268 G L+LY G+G ++ ++R FD + +I +V+ + N+A H ++ +MS K Sbjct: 43 GITLDLYGGSGALAIEAVSRGFDHAVITDINYAAVQIIKKNVALTHEEEKFEVFKMSDKV 102 Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300 LK + H Y+F +F+DPP Sbjct: 103 ------------ALKFLHEHDYKFDMVFLDPP 122 >gi|218551620|ref|YP_002385412.1| 16S ribosomal RNA m2G1207 methyltransferase [Escherichia fergusonii ATCC 35469] gi|226712954|sp|B7LNK6|RSMC_ESCF3 RecName: Full=Ribosomal RNA small subunit methyltransferase C; AltName: Full=16S rRNA m2G1207 methyltransferase; AltName: Full=rRNA (guanine-N(2)-)-methyltransferase rsmC gi|218359162|emb|CAQ91825.1| 16S RNA m2G1207 methylase [Escherichia fergusonii ATCC 35469] Length = 343 Score = 40.8 bits (94), Expect = 0.31, Method: Compositional matrix adjust. Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 4/83 (4%) Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD--RVL 235 L + + F++ + +L L T +G +L++ CG G S+ ARH R+ Sbjct: 167 LTVKTLPGVFSRDGLDVGSQLLLSTL--TPHTKGKVLDVGCGAGVLSVAFARHSPKIRLT 224 Query: 236 AVEIAKPSVEAARYNIAANHVNN 258 +++ P+VEA+R +AAN + Sbjct: 225 LCDVSAPAVEASRATLAANGIEG 247 >gi|115377525|ref|ZP_01464725.1| SAM-dependent methyltransferases [Stigmatella aurantiaca DW4/3-1] gi|310820069|ref|YP_003952427.1| hypothetical protein STAUR_2802 [Stigmatella aurantiaca DW4/3-1] gi|115365465|gb|EAU64500.1| SAM-dependent methyltransferases [Stigmatella aurantiaca DW4/3-1] gi|309393141|gb|ADO70600.1| conserved uncharacterized protein [Stigmatella aurantiaca DW4/3-1] Length = 394 Score = 40.8 bits (94), Expect = 0.31, Method: Compositional matrix adjust. Identities = 37/142 (26%), Positives = 60/142 (42%), Gaps = 19/142 (13%) Query: 178 LIYRQIENSF-----TQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD 232 +Y + EN F G + ++ L A + +G+ L+L+ +G F+L L+R D Sbjct: 185 FVYHEGENRFEVDLLGDMKTGAFLDQVDNHLRAGELARGEALDLFSYHGGFALALSRTCD 244 Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292 VLAVE + + N N NV + ++ F+ L+ RF Sbjct: 245 TVLAVEQDPKASGRIQANAERNGRTNVTVENANA------------FDVLRRFADTGRRF 292 Query: 293 KTIFVDPPRSGLDDATVGMVQA 314 T+ +DPP GL G+ A Sbjct: 293 DTVVLDPP--GLAKRREGLATA 312 >gi|194228102|ref|XP_001492969.2| PREDICTED: similar to Putative methyltransferase CXorf34 homolog [Equus caballus] Length = 611 Score = 40.8 bits (94), Expect = 0.32, Method: Compositional matrix adjust. Identities = 45/182 (24%), Positives = 77/182 (42%), Gaps = 38/182 (20%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 ++F Q N ML + G+ + LL++ CG G L LA++ +VL +E+ + Sbjct: 466 DAFFQINTS-GAEMLYQTVGELSGVNSNTILLDICCGTGVIGLSLAQYTSQVLGIELVEQ 524 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302 +VE AR+ A N+ +++ QA+R R L +FV Sbjct: 525 AVEDARWTAA---FNDHRVI--------QAIRNCRAIRTL------------VFVSCKPQ 561 Query: 303 GLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362 G + T +V+ + C P+S + +L + + D FP+T H E +L Sbjct: 562 G--ETTRNVVE-------LCCPPNSAKK---LLGEPFVLRQAVPVDLFPHTPHCELVLLF 609 Query: 363 VR 364 R Sbjct: 610 TR 611 >gi|324112056|gb|EGC06034.1| methyltransferase small domain-containing protein [Escherichia fergusonii B253] Length = 343 Score = 40.8 bits (94), Expect = 0.33, Method: Compositional matrix adjust. Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 4/83 (4%) Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD--RVL 235 L + + F++ + +L L T +G +L++ CG G S+ ARH R+ Sbjct: 167 LTVKTLPGVFSRDGLDVGSQLLLSTL--TPHTKGKVLDVGCGAGVLSVAFARHSPKIRLT 224 Query: 236 AVEIAKPSVEAARYNIAANHVNN 258 +++ P+VEA+R +AAN + Sbjct: 225 LCDVSAPAVEASRATLAANGIEG 247 >gi|290558986|gb|EFD92368.1| methylase [Candidatus Parvarchaeum acidophilus ARMAN-5] gi|326422531|gb|EGD71927.1| Methylase [Candidatus Parvarchaeum acidophilus ARMAN-5_'5-way FS'] Length = 193 Score = 40.8 bits (94), Expect = 0.33, Method: Compositional matrix adjust. Identities = 25/99 (25%), Positives = 51/99 (51%), Gaps = 17/99 (17%) Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261 +L A K +G++L+++ G+G ++ A+ V AV+I +++AAR N N + N+K Sbjct: 20 LLRAVKYAKGEVLDMFTGSGIIAINAAKTAHNVTAVDINPFAIDAARKNSKINGIKNIKF 79 Query: 262 VRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300 ++ S F++ + + +F I+ +PP Sbjct: 80 IK--SDLFSE---------------LENKKFDVIYANPP 101 >gi|295098508|emb|CBK87598.1| 16S rRNA m(2)G 1207 methyltransferase [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 342 Score = 40.8 bits (94), Expect = 0.34, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 2/55 (3%) Query: 206 TKGIQGDLLELYCGNGNFSLVLARHFDRV--LAVEIAKPSVEAARYNIAANHVNN 258 T +G +L++ CG G S VLA H +V +++ P+VEA+R +AAN + Sbjct: 193 TPHTKGKVLDVGCGAGVLSTVLASHSPKVRLTLCDVSAPAVEASRATLAANGIEG 247 >gi|322433866|ref|YP_004216078.1| hypothetical protein AciX9_0224 [Acidobacterium sp. MP5ACTX9] gi|321161593|gb|ADW67298.1| hypothetical protein AciX9_0224 [Acidobacterium sp. MP5ACTX9] Length = 423 Score = 40.8 bits (94), Expect = 0.34, Method: Compositional matrix adjust. Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 10/97 (10%) Query: 204 AATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVR 263 AA + G L++ G F+L LA+ DRV V+ ++ ++E A N+A N + Sbjct: 243 AAARYAHGRALDVCTYQGGFALHLAQTCDRVTGVDTSRAALEVADANLALNPHLKARTDW 302 Query: 264 MSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300 M + F+ L++ + RF TI +DPP Sbjct: 303 MEAD----------AFDLLREYESTGERFDTIVLDPP 329 >gi|23097566|ref|NP_691032.1| hypothetical protein OB0111 [Oceanobacillus iheyensis HTE831] gi|22775789|dbj|BAC12067.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831] Length = 204 Score = 40.8 bits (94), Expect = 0.34, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 34/55 (61%), Gaps = 2/55 (3%) Query: 209 IQGDLLELYCGNGNFSLVLARHF-DRVLA-VEIAKPSVEAARYNIAANHVNNVKI 261 I GD+L++ CG G L LA F DR ++ V+I +VE A+ N + N++ NV I Sbjct: 61 INGDILDVGCGYGPIGLSLAAEFEDRAVSMVDINDRAVELAKRNASVNNITNVTI 115 >gi|219110012|ref|XP_002176758.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217411293|gb|EEC51221.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 695 Score = 40.8 bits (94), Expect = 0.35, Method: Compositional matrix adjust. Identities = 44/160 (27%), Positives = 64/160 (40%), Gaps = 16/160 (10%) Query: 213 LLELYCGNGNFSL--VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270 LL++ CG G L V V+ V+I++P++ AR N N F Sbjct: 521 LLDVCCGTGTIGLTCVTEGVVAEVVGVDISEPAINDARKNAELNGCGQYDKDTGGLIHFV 580 Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA---YPHILYISCNP-D 326 A R E+ + S + VDP R GL V ++A I+Y+SCNP Sbjct: 581 -AGRAEQIMTSVISDAKQSGKKLVAVVDPARDGLHADVVRALRANERIKRIVYVSCNPTG 639 Query: 327 SLCRDLSILSTTHT---------IERLALFDQFPYTRHME 357 +L RD ++ T + + D FP T H E Sbjct: 640 TLVRDAALFCAPPTKRYNGSAFRVVAASPVDMFPGTAHTE 679 >gi|300926393|ref|ZP_07142190.1| methyltransferase small domain protein [Escherichia coli MS 182-1] gi|300417588|gb|EFK00899.1| methyltransferase small domain protein [Escherichia coli MS 182-1] Length = 343 Score = 40.8 bits (94), Expect = 0.35, Method: Compositional matrix adjust. Identities = 30/109 (27%), Positives = 51/109 (46%), Gaps = 7/109 (6%) Query: 152 IGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG 211 GR K + D D +V G T+ + + F++ + +L L T +G Sbjct: 144 FGRLEKQPV-FDADKFWGEYSVDGLTV--KTLPGVFSRDGLDVGSQLLLSTL--TPHTKG 198 Query: 212 DLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNN 258 +L++ CG G S+ ARH R+ +++ P+VEA+R +A N V Sbjct: 199 KVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAGNCVEG 247 >gi|320103066|ref|YP_004178657.1| PUA domain-containing protein [Isosphaera pallida ATCC 43644] gi|319750348|gb|ADV62108.1| PUA domain containing protein [Isosphaera pallida ATCC 43644] Length = 422 Score = 40.8 bits (94), Expect = 0.36, Method: Compositional matrix adjust. Identities = 42/147 (28%), Positives = 65/147 (44%), Gaps = 20/147 (13%) Query: 203 LAATKGIQGD-LLELYCGNGNFSLVLARHFDRV--LAVEIAKPSVEAARYNIAANHVNNV 259 LAA + +G +L+LYC G FSLV +H V L + + +VE AR + NH+ Sbjct: 240 LAAARYARGRCVLDLYCHVGGFSLVALKHGGAVSSLGFDSSSVAVEFARRHAVINHLPT- 298 Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHIL 319 R A++ + R F + VDPP+ +T G+ +A + Sbjct: 299 --ARFEVAHVPDALKMLKATGRT---------FGMVVVDPPK--FARSTKGVEEAVKAYV 345 Query: 320 YISCNPDSLCRDLSIL---STTHTIER 343 ++C+ SL IL S + IER Sbjct: 346 RLNCDAVSLLEPDGILVTCSCSGLIER 372 >gi|224038935|gb|ACN38364.1| putative sisomicin methyltransferase [Micromonospora inyonensis] Length = 320 Score = 40.8 bits (94), Expect = 0.36, Method: Compositional matrix adjust. Identities = 19/46 (41%), Positives = 29/46 (63%) Query: 214 LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259 L++ CG+G SLVLA ++ VL V++ +V +R N A N + NV Sbjct: 128 LDMGCGSGVLSLVLADRYESVLGVDVNPRAVALSRLNAALNGLTNV 173 >gi|153835098|ref|ZP_01987765.1| putative methyltransferase [Vibrio harveyi HY01] gi|148868448|gb|EDL67556.1| putative methyltransferase [Vibrio harveyi HY01] Length = 199 Score = 40.8 bits (94), Expect = 0.36, Method: Compositional matrix adjust. Identities = 27/106 (25%), Positives = 48/106 (45%), Gaps = 17/106 (16%) Query: 210 QGDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268 Q L+L+ G+G A R D+V +E+ + + + N+A+ + NN+++V + Sbjct: 60 QAKCLDLFAGSGGLGFESASRQADQVTMIELNPQAFQQLQKNVASLNANNIQVVNTDAIS 119 Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGMVQ 313 F Q +F+DPP R GL D TV +++ Sbjct: 120 FLQQ---------------PGTPHHVVFIDPPFRKGLLDETVTLLE 150 >gi|229542213|ref|ZP_04431273.1| methyltransferase small [Bacillus coagulans 36D1] gi|229326633|gb|EEN92308.1| methyltransferase small [Bacillus coagulans 36D1] Length = 200 Score = 40.8 bits (94), Expect = 0.36, Method: Compositional matrix adjust. Identities = 29/97 (29%), Positives = 45/97 (46%), Gaps = 3/97 (3%) Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLV 226 +D T+ G T ++ + F++ +L L +G +L++ CG G L Sbjct: 17 IDFTFTLRGHTFHFQTDQGVFSKKEVDFGSRVL-LDLVTMPETEGPVLDMGCGYGPIGLA 75 Query: 227 LARHFD--RVLAVEIAKPSVEAARYNIAANHVNNVKI 261 LA F V V+I +VE A N A NH++NV I Sbjct: 76 LATSFPGRHVHMVDINTRAVELAEKNAARNHISNVSI 112 >gi|320527452|ref|ZP_08028633.1| RNA methyltransferase, RsmD family [Solobacterium moorei F0204] gi|320132165|gb|EFW24714.1| RNA methyltransferase, RsmD family [Solobacterium moorei F0204] Length = 186 Score = 40.8 bits (94), Expect = 0.38, Method: Compositional matrix adjust. Identities = 28/108 (25%), Positives = 53/108 (49%), Gaps = 16/108 (14%) Query: 200 EWVLAATKGI--QGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAA-NH 255 E V ++ G+ G +L+LY G+G L L+R +D + +I+K ++ R NI + Sbjct: 30 EAVFSSLGGMFDGGMVLDLYAGSGANGLEALSRGYDYAVFADISKDAIHVIRKNIESLRC 89 Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 + K++ M K+ ++ E RF+ +++DPP +G Sbjct: 90 IGKTKVLHMPDKKALSLLKAE------------GLRFELVYLDPPYAG 125 >gi|85814038|emb|CAF31454.1| putative gentamicin methyltransferase [Micromonospora echinospora] Length = 321 Score = 40.8 bits (94), Expect = 0.39, Method: Compositional matrix adjust. Identities = 19/46 (41%), Positives = 29/46 (63%) Query: 214 LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259 L++ CG+G SLVLA ++ VL V++ +V +R N A N + NV Sbjct: 128 LDMGCGSGVLSLVLADRYESVLGVDVNPRAVALSRLNAALNGLTNV 173 >gi|170681708|ref|YP_001746825.1| 16S ribosomal RNA m2G1207 methyltransferase [Escherichia coli SMS-3-5] gi|226712950|sp|B1LEH4|RSMC_ECOSM RecName: Full=Ribosomal RNA small subunit methyltransferase C; AltName: Full=16S rRNA m2G1207 methyltransferase; AltName: Full=rRNA (guanine-N(2)-)-methyltransferase rsmC gi|170519426|gb|ACB17604.1| ribosomal RNA small subunit methyltransferase C [Escherichia coli SMS-3-5] Length = 343 Score = 40.4 bits (93), Expect = 0.40, Method: Compositional matrix adjust. Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 4/83 (4%) Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD--RVL 235 L + + F++ + +L L T +G +L++ CG G S+ ARH R+ Sbjct: 167 LTVKTLPGVFSRDGLDVGSQLLLSTL--TPHTKGKVLDVGCGAGVLSVAFARHSPKIRLT 224 Query: 236 AVEIAKPSVEAARYNIAANHVNN 258 +++ P+VEA+R +AAN + Sbjct: 225 LCDVSAPAVEASRATLAANGIEG 247 >gi|220917304|ref|YP_002492608.1| methyltransferase [Anaeromyxobacter dehalogenans 2CP-1] gi|219955158|gb|ACL65542.1| methyltransferase [Anaeromyxobacter dehalogenans 2CP-1] Length = 179 Score = 40.4 bits (93), Expect = 0.41, Method: Compositional matrix adjust. Identities = 30/92 (32%), Positives = 42/92 (45%), Gaps = 16/92 (17%) Query: 211 GDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNI-AANHVNNVKIVRMSSKE 268 GD+L+LY G G +L L+R R + VE +P+ E R N + V++VR E Sbjct: 44 GDVLDLYAGTGALALEALSRGCARAVCVEADRPTAELLRRNAETCGWTDRVEVVRGRVPE 103 Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300 A+ R + RF FVDPP Sbjct: 104 ---ALAR-----------LAPGRFALAFVDPP 121 >gi|297618925|ref|YP_003707030.1| methyltransferase small [Methanococcus voltae A3] gi|297377902|gb|ADI36057.1| methyltransferase small [Methanococcus voltae A3] Length = 214 Score = 40.4 bits (93), Expect = 0.43, Method: Compositional matrix adjust. Identities = 30/91 (32%), Positives = 42/91 (46%), Gaps = 14/91 (15%) Query: 210 QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269 + D+L++ CG G + LA + V+ +I K SV A+ NI NHV N I K F Sbjct: 56 EDDILDMGCGYGAIGISLADDVNSVIMTDINKRSVSLAKQNIKLNHVKNKNI-----KIF 110 Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300 + E KD +F TI +PP Sbjct: 111 QGNLYEEVP----KDA-----KFDTIISNPP 132 >gi|254832455|ref|ZP_05237110.1| hypothetical protein Lmon1_13954 [Listeria monocytogenes 10403S] Length = 50 Score = 40.4 bits (93), Expect = 0.43, Method: Composition-based stats. Identities = 17/46 (36%), Positives = 29/46 (63%), Gaps = 1/46 (2%) Query: 318 ILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLL 362 ++Y+SCNP +L RD+ IL+ + +++ D FP T H+E +L Sbjct: 2 VVYVSCNPGTLARDMKILTDGGYVAKKVQPVDMFPMTTHIEAVTVL 47 >gi|197124168|ref|YP_002136119.1| hypothetical protein AnaeK_3779 [Anaeromyxobacter sp. K] gi|196174017|gb|ACG74990.1| protein of unknown function Met10 [Anaeromyxobacter sp. K] Length = 389 Score = 40.4 bits (93), Expect = 0.43, Method: Compositional matrix adjust. Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 12/90 (13%) Query: 211 GDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270 G L+ + G F+L LAR +RV AVE+ + R N A N N+++V Sbjct: 218 GRCLDCFSYAGGFALHLARRAERVTAVEMQPVAAGLLRENAALNRAENLEVV-------- 269 Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPP 300 E F+ L+D F + +DPP Sbjct: 270 ----EENAFDYLRDRSEEEPAFDLVVLDPP 295 >gi|197122519|ref|YP_002134470.1| methyltransferase [Anaeromyxobacter sp. K] gi|196172368|gb|ACG73341.1| methyltransferase [Anaeromyxobacter sp. K] Length = 179 Score = 40.4 bits (93), Expect = 0.44, Method: Compositional matrix adjust. Identities = 30/92 (32%), Positives = 42/92 (45%), Gaps = 16/92 (17%) Query: 211 GDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNI-AANHVNNVKIVRMSSKE 268 GD+L+LY G G +L L+R R + VE +P+ E R N + V++VR E Sbjct: 44 GDVLDLYAGTGALALEALSRGCARAVCVEADRPTAELLRRNAETCGWADRVEVVRGRVPE 103 Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300 A+ R + RF FVDPP Sbjct: 104 ---ALAR-----------LAPGRFALAFVDPP 121 >gi|302389423|ref|YP_003825244.1| SAM-dependent methyltransferase [Thermosediminibacter oceani DSM 16646] gi|302200051|gb|ADL07621.1| SAM-dependent methyltransferase [Thermosediminibacter oceani DSM 16646] Length = 390 Score = 40.4 bits (93), Expect = 0.45, Method: Compositional matrix adjust. Identities = 27/91 (29%), Positives = 46/91 (50%), Gaps = 12/91 (13%) Query: 211 GDLLELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269 ++LE +C G+F+L AR+ +VLA + +K +VE AR N N +N++ EF Sbjct: 217 AEVLECFCYTGSFALSAARYGAKKVLAFDSSKDAVELARENAVLNGLNDI-------CEF 269 Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300 + F+ L+ +F + +DPP Sbjct: 270 QEG----NAFDVLRQFYDSRKKFDVVILDPP 296 >gi|86158158|ref|YP_464943.1| hypothetical protein Adeh_1733 [Anaeromyxobacter dehalogenans 2CP-C] gi|85774669|gb|ABC81506.1| conserved hypothetical protein [Anaeromyxobacter dehalogenans 2CP-C] Length = 179 Score = 40.4 bits (93), Expect = 0.45, Method: Compositional matrix adjust. Identities = 29/92 (31%), Positives = 42/92 (45%), Gaps = 16/92 (17%) Query: 211 GDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNI-AANHVNNVKIVRMSSKE 268 GD+L+LY G G +L L+R R + VE +P+ E R N + V++VR Sbjct: 44 GDVLDLYAGTGALALEALSRGCARAVCVEADRPTAELLRRNAETCGWADRVEVVR---GR 100 Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300 +A+ R + RF FVDPP Sbjct: 101 VPEALAR-----------LAPGRFALAFVDPP 121 >gi|56477677|ref|YP_159266.1| SAM-dependent methyltransferase [Aromatoleum aromaticum EbN1] gi|56313720|emb|CAI08365.1| predicted SAM-dependent methyltransferases [Aromatoleum aromaticum EbN1] Length = 396 Score = 40.4 bits (93), Expect = 0.45, Method: Compositional matrix adjust. Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 10/90 (11%) Query: 213 LLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271 +L +C G FSL LA VL+++ + P+++A R N+A N + S E+ Q Sbjct: 223 VLNCFCYTGGFSLQALAGGATSVLSIDSSGPALDAGRRNLAMN-----PQLDASRAEWLQ 277 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPR 301 A F L+ + RF I +DPP+ Sbjct: 278 A----DVFEALRVLKSEGRRFDLIVLDPPK 303 >gi|220918947|ref|YP_002494251.1| protein of unknown function Met10 [Anaeromyxobacter dehalogenans 2CP-1] gi|219956801|gb|ACL67185.1| protein of unknown function Met10 [Anaeromyxobacter dehalogenans 2CP-1] Length = 389 Score = 40.4 bits (93), Expect = 0.46, Method: Compositional matrix adjust. Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 12/90 (13%) Query: 211 GDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270 G L+ + G F+L LAR +RV AVE+ + R N A N N+++V Sbjct: 218 GRCLDCFSYAGGFALHLARRAERVTAVEMQPVAAGLLRENAALNRAENLEVV-------- 269 Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPP 300 E F+ L+D F + +DPP Sbjct: 270 ----EENAFDYLRDRSEEEPAFDLVVLDPP 295 >gi|296122426|ref|YP_003630204.1| methyltransferase small [Planctomyces limnophilus DSM 3776] gi|296014766|gb|ADG68005.1| methyltransferase small [Planctomyces limnophilus DSM 3776] Length = 393 Score = 40.4 bits (93), Expect = 0.47, Method: Compositional matrix adjust. Identities = 31/113 (27%), Positives = 49/113 (43%), Gaps = 18/113 (15%) Query: 205 ATKGIQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNNVKIV 262 A + G++L+L C + F + RH + V+ V+ +K +VE A N+ N + + V Sbjct: 214 AAQFASGNMLDLCCYSAGFGMNALRHGEVTHVIGVDTSKIAVENATANVTRNGLADRYEV 273 Query: 263 RMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-----RSGLDDATVG 310 R F L + RF+TI +DPP RS +D G Sbjct: 274 RHGDA-----------FEVLTEFRNQGVRFQTIVLDPPKLVKSRSTMDSGLKG 315 >gi|86160140|ref|YP_466925.1| SAM-dependent methyltransferase [Anaeromyxobacter dehalogenans 2CP-C] gi|85776651|gb|ABC83488.1| SAM-dependent methyltransferase [Anaeromyxobacter dehalogenans 2CP-C] Length = 389 Score = 40.4 bits (93), Expect = 0.47, Method: Compositional matrix adjust. Identities = 27/90 (30%), Positives = 39/90 (43%), Gaps = 12/90 (13%) Query: 211 GDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270 G L+ + G F+L LAR +RV AVE+ R N A N N+++V Sbjct: 218 GRCLDCFSYAGGFALQLARRAERVTAVEMQPVPAGLLRENAALNRAENLEVV-------- 269 Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPP 300 E F+ L+D F + +DPP Sbjct: 270 ----EENAFDYLRDRSEEEPAFDLVVLDPP 295 >gi|183600473|ref|ZP_02961966.1| hypothetical protein PROSTU_04049 [Providencia stuartii ATCC 25827] gi|188019957|gb|EDU57997.1| hypothetical protein PROSTU_04049 [Providencia stuartii ATCC 25827] Length = 272 Score = 40.4 bits (93), Expect = 0.48, Method: Compositional matrix adjust. Identities = 16/56 (28%), Positives = 36/56 (64%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268 LL++ CG G+ L LA+HF ++ ++ ++ ++AA+ A +NNV+ +++ ++ Sbjct: 63 LLDVGCGPGSVCLALAKHFTTIIGIDYSQGMLDAAQERAKAMDINNVRFEQLAWED 118 >gi|163792498|ref|ZP_02186475.1| methyltransferase, UbiE/COQ5 family protein [alpha proteobacterium BAL199] gi|159182203|gb|EDP66712.1| methyltransferase, UbiE/COQ5 family protein [alpha proteobacterium BAL199] Length = 217 Score = 40.4 bits (93), Expect = 0.48, Method: Compositional matrix adjust. Identities = 20/58 (34%), Positives = 32/58 (55%) Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269 +LLE CG G+ +L LA R+ A++I+ V AR ++ V NV +R + +F Sbjct: 52 ELLEFGCGTGSTALALAPDVARITAIDISSKMVGIARRKAESSGVANVAFLRAAIDDF 109 >gi|291300408|ref|YP_003511686.1| methyltransferase type 11 [Stackebrandtia nassauensis DSM 44728] gi|290569628|gb|ADD42593.1| Methyltransferase type 11 [Stackebrandtia nassauensis DSM 44728] Length = 264 Score = 40.4 bits (93), Expect = 0.51, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 46/90 (51%), Gaps = 5/90 (5%) Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 + + +G M E LA G++ D +LEL CG G ++ LAR RV AVE+ Sbjct: 20 YDRARSGYPARMYE-DLAELTGLKPDDHVLELGCGTGQATVSLARQGYRVTAVELGAGMA 78 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMR 274 AR N+A+ +V++V S +++ R Sbjct: 79 TVARRNLAS--FPDVEVVNSSFEDWPLPSR 106 >gi|116621453|ref|YP_823609.1| SAM-dependent methyltransferase [Candidatus Solibacter usitatus Ellin6076] gi|116224615|gb|ABJ83324.1| SAM-dependent methyltransferase [Candidatus Solibacter usitatus Ellin6076] Length = 387 Score = 40.0 bits (92), Expect = 0.51, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 32/56 (57%) Query: 204 AATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259 AA G L+ + G F+L LA + V AV+ + P++EAAR N AN ++N+ Sbjct: 209 AAQYARGGRALDCFTSTGGFALHLAPKCEHVEAVDSSGPALEAARANSTANGIDNI 264 >gi|161504897|ref|YP_001572009.1| 16S ribosomal RNA m2G1207 methyltransferase [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|226712971|sp|A9MRB9|RSMC_SALAR RecName: Full=Ribosomal RNA small subunit methyltransferase C; AltName: Full=16S rRNA m2G1207 methyltransferase; AltName: Full=rRNA (guanine-N(2)-)-methyltransferase rsmC gi|160866244|gb|ABX22867.1| hypothetical protein SARI_03023 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 342 Score = 40.0 bits (92), Expect = 0.52, Method: Compositional matrix adjust. Identities = 30/108 (27%), Positives = 52/108 (48%), Gaps = 7/108 (6%) Query: 153 GRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD 212 GR K + Y DE ++ G LI + + F++ + +L L T +G Sbjct: 145 GRLEKQPLFSLEPYWDE-YSIDG--LIIKTLPGVFSRDGLDVGSQLLLSTL--TPHTKGK 199 Query: 213 LLELYCGNGNFSLVLARHFDRV--LAVEIAKPSVEAARYNIAANHVNN 258 +L++ CG G S LA H +V +++ P+VEA+R +A N ++ Sbjct: 200 VLDVGCGAGVLSAALASHSPKVRLTLCDVSAPAVEASRATLAVNGLDG 247 >gi|254230124|ref|ZP_04923520.1| putative methyltransferase [Vibrio sp. Ex25] gi|151937369|gb|EDN56231.1| putative methyltransferase [Vibrio sp. Ex25] Length = 246 Score = 40.0 bits (92), Expect = 0.56, Method: Compositional matrix adjust. Identities = 28/106 (26%), Positives = 50/106 (47%), Gaps = 17/106 (16%) Query: 210 QGDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268 Q L+L+ G+G A R ++V VE+ + + + N+A+ + NN+++V + Sbjct: 107 QAKCLDLFAGSGGLGFESASRQAEQVTMVELNPQAFQQLQKNVASLNANNIQVVNTDALS 166 Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGMVQ 313 F LK + +F+DPP R GL D TV +++ Sbjct: 167 F------------LKQPGTAHH---VVFIDPPFRKGLLDETVALLE 197 >gi|56419633|ref|YP_146951.1| hypothetical protein GK1098 [Geobacillus kaustophilus HTA426] gi|56379475|dbj|BAD75383.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426] Length = 198 Score = 40.0 bits (92), Expect = 0.57, Method: Compositional matrix adjust. Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 12/91 (13%) Query: 211 GDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269 G+ L+L+ G+G + L+R +RV+ V+ + +V+ R N+AA + + + E Sbjct: 43 GNGLDLFAGSGGLGIEALSRGIERVIFVDQDRKAVQTVRKNVAACGLEKRAEIYCNDAE- 101 Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300 LK + RF IF+DPP Sbjct: 102 ----------RALKAVAKRGLRFAVIFLDPP 122 >gi|320169843|gb|EFW46742.1| methyltransferase [Capsaspora owczarzaki ATCC 30864] Length = 389 Score = 40.0 bits (92), Expect = 0.58, Method: Compositional matrix adjust. Identities = 27/92 (29%), Positives = 51/92 (55%), Gaps = 4/92 (4%) Query: 210 QGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHV-NNVKIVRMSS 266 Q LL++ CG G+ ++ A+ F +L VEIA V A+ +I + + +NV++V+ S+ Sbjct: 153 QDTLLDVGCGCGDQDVLFAKTFQPKSILGVEIAPSQVAQAQCHIQRHGLESNVQVVQGSA 212 Query: 267 KEFTQAMRREREFNRLKDID-IHSYRFKTIFV 297 + + R R+F+ + +D + Y + FV Sbjct: 213 VDLAASCRAARQFSVVLSLDSAYHYALRRDFV 244 >gi|283788394|ref|YP_003368259.1| ribosomal RNA small subunit methyltransferase C [Citrobacter rodentium ICC168] gi|282951848|emb|CBG91558.1| ribosomal RNA small subunit methyltransferase C [Citrobacter rodentium ICC168] Length = 342 Score = 40.0 bits (92), Expect = 0.58, Method: Compositional matrix adjust. Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 4/83 (4%) Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRV--L 235 L + + F++ + +L L T +G +L++ CG G S+ LA H +V Sbjct: 167 LTIKTLPGVFSRDGLDVGSQLLLSTL--TPHTKGKVLDVGCGAGVLSVALASHSPKVRLT 224 Query: 236 AVEIAKPSVEAARYNIAANHVNN 258 +++ P+VEA+R +AAN + Sbjct: 225 LCDVSAPAVEASRATLAANGIEG 247 >gi|262392911|ref|YP_003284765.1| ribosomal RNA small subunit methyltransferase D [Vibrio sp. Ex25] gi|262336505|gb|ACY50300.1| ribosomal RNA small subunit methyltransferase D [Vibrio sp. Ex25] Length = 199 Score = 40.0 bits (92), Expect = 0.62, Method: Compositional matrix adjust. Identities = 28/106 (26%), Positives = 50/106 (47%), Gaps = 17/106 (16%) Query: 210 QGDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268 Q L+L+ G+G A R ++V VE+ + + + N+A+ + NN+++V + Sbjct: 60 QAKCLDLFAGSGGLGFESASRQAEQVTMVELNPQAFQQLQKNVASLNANNIQVVNTDALS 119 Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGMVQ 313 F LK + +F+DPP R GL D TV +++ Sbjct: 120 F------------LKQPGTAHH---VVFIDPPFRKGLLDETVALLE 150 >gi|110644807|ref|YP_672537.1| 16S ribosomal RNA m2G1207 methyltransferase [Escherichia coli 536] gi|191174543|ref|ZP_03036040.1| ribosomal RNA small subunit methyltransferase C [Escherichia coli F11] gi|300992719|ref|ZP_07179996.1| methyltransferase small domain protein [Escherichia coli MS 200-1] gi|123147328|sp|Q0T8U3|RSMC_ECOL5 RecName: Full=Ribosomal RNA small subunit methyltransferase C; AltName: Full=16S rRNA m2G1207 methyltransferase; AltName: Full=rRNA (guanine-N(2)-)-methyltransferase rsmC gi|110346399|gb|ABG72636.1| ribosomal RNA small subunit methyltransferase C [Escherichia coli 536] gi|190905189|gb|EDV64831.1| ribosomal RNA small subunit methyltransferase C [Escherichia coli F11] gi|300305215|gb|EFJ59735.1| methyltransferase small domain protein [Escherichia coli MS 200-1] gi|323189785|gb|EFZ75063.1| ribosomal RNA small subunit methyltransferase C [Escherichia coli RN587/1] gi|324007717|gb|EGB76936.1| methyltransferase small domain protein [Escherichia coli MS 57-2] gi|324014050|gb|EGB83269.1| methyltransferase small domain protein [Escherichia coli MS 60-1] Length = 343 Score = 40.0 bits (92), Expect = 0.64, Method: Compositional matrix adjust. Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 4/83 (4%) Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD--RVL 235 L + + F++ + +L L T +G +L++ CG G S+ ARH R+ Sbjct: 167 LTVKTLPGVFSRDGLDVGSQLLLSTL--TPHTKGKVLDVGCGAGVLSVAFARHSPKIRLT 224 Query: 236 AVEIAKPSVEAARYNIAANHVNN 258 +++ P+VEA+R +A N V Sbjct: 225 LCDVSAPAVEASRATLATNGVEG 247 >gi|71409126|ref|XP_806926.1| proliferator-activated receptor-interacting protein (PRIP) interacting protein (PIMT) [Trypanosoma gi|70870807|gb|EAN85075.1| proliferator-activated receptor-interacting protein (PRIP) interacting protein (PIMT), putative [Trypanosoma cruzi] Length = 200 Score = 40.0 bits (92), Expect = 0.64, Method: Compositional matrix adjust. Identities = 17/46 (36%), Positives = 32/46 (69%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN 258 +L+L+CG G ++ LAR +++V+AV+I ++EAA+ N+ V + Sbjct: 64 VLDLFCGCGGDTVQLARVYEKVVAVDIDPDAIEAAKKNVEVYGVGD 109 >gi|306815434|ref|ZP_07449583.1| 16S ribosomal RNA m2G1207 methyltransferase [Escherichia coli NC101] gi|305851096|gb|EFM51551.1| 16S ribosomal RNA m2G1207 methyltransferase [Escherichia coli NC101] Length = 343 Score = 39.7 bits (91), Expect = 0.67, Method: Compositional matrix adjust. Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 4/83 (4%) Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD--RVL 235 L + + F++ + +L L T +G +L++ CG G S+ ARH R+ Sbjct: 167 LTVKTLPGVFSRDGLDVGSQLLLSTL--TPHTKGKVLDVGCGAGVLSVAFARHSPKIRLT 224 Query: 236 AVEIAKPSVEAARYNIAANHVNN 258 +++ P+VEA+R +A N V Sbjct: 225 LCDVSAPAVEASRATLATNGVEG 247 >gi|218692758|ref|YP_002400970.1| 16S ribosomal RNA m2G1207 methyltransferase [Escherichia coli ED1a] gi|226712942|sp|B7MTB6|RSMC_ECO81 RecName: Full=Ribosomal RNA small subunit methyltransferase C; AltName: Full=16S rRNA m2G1207 methyltransferase; AltName: Full=rRNA (guanine-N(2)-)-methyltransferase rsmC gi|218430322|emb|CAR11192.1| 16S RNA m2G1207 methylase [Escherichia coli ED1a] Length = 343 Score = 39.7 bits (91), Expect = 0.69, Method: Compositional matrix adjust. Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 4/83 (4%) Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD--RVL 235 L + + F++ + +L L T +G +L++ CG G S+ ARH R+ Sbjct: 167 LTVKTLPGVFSRDGLDVGSQLLLSTL--TPHTKGKVLDVGCGAGVLSVAFARHSPKIRLT 224 Query: 236 AVEIAKPSVEAARYNIAANHVNN 258 +++ P+VEA+R +A N V Sbjct: 225 LCDVSAPAVEASRATLATNGVEG 247 >gi|237729269|ref|ZP_04559750.1| 16S ribosomal RNA methyltransferase [Citrobacter sp. 30_2] gi|226908998|gb|EEH94916.1| 16S ribosomal RNA methyltransferase [Citrobacter sp. 30_2] Length = 343 Score = 39.7 bits (91), Expect = 0.69, Method: Compositional matrix adjust. Identities = 37/150 (24%), Positives = 60/150 (40%), Gaps = 26/150 (17%) Query: 153 GRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD 212 GR K + Y DE T L + + F++ + +L L T +G Sbjct: 145 GRLEKQPVFDAEKYWDEYQT---ENLTIKTLPGVFSRDGLDVGSQLLLSTL--TPHTKGK 199 Query: 213 LLELYCGNGNFSLVLARHFDRV--LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270 +L++ CG G S+ LA H +V +++ +VEA+R +AAN + I Sbjct: 200 VLDVGCGAGVLSVALASHSPKVRLTLCDVSAAAVEASRATLAANGIEGDVIAS------- 252 Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPP 300 N D+ + RF I +PP Sbjct: 253 ---------NVFSDV---TGRFDMIISNPP 270 >gi|170768477|ref|ZP_02902930.1| ribosomal RNA small subunit methyltransferase C [Escherichia albertii TW07627] gi|170122581|gb|EDS91512.1| ribosomal RNA small subunit methyltransferase C [Escherichia albertii TW07627] Length = 343 Score = 39.7 bits (91), Expect = 0.71, Method: Compositional matrix adjust. Identities = 29/109 (26%), Positives = 50/109 (45%), Gaps = 7/109 (6%) Query: 152 IGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG 211 GR K + D D +V G T+ + + F++ +L L T +G Sbjct: 144 FGRLEKQPV-FDADKFWGEYSVDGLTI--KTLPGVFSRDGLDAGSQLLLSTL--TPHTKG 198 Query: 212 DLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNN 258 +L++ CG G S+ ARH R+ +++ P+VEA+R + AN + Sbjct: 199 KVLDIGCGTGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLVANGIEG 247 >gi|157147620|ref|YP_001454940.1| 16S ribosomal RNA m2G1207 methyltransferase [Citrobacter koseri ATCC BAA-895] gi|226712936|sp|A8ALZ1|RSMC_CITK8 RecName: Full=Ribosomal RNA small subunit methyltransferase C; AltName: Full=16S rRNA m2G1207 methyltransferase; AltName: Full=rRNA (guanine-N(2)-)-methyltransferase rsmC gi|157084825|gb|ABV14503.1| hypothetical protein CKO_03420 [Citrobacter koseri ATCC BAA-895] Length = 342 Score = 39.7 bits (91), Expect = 0.71, Method: Compositional matrix adjust. Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 4/83 (4%) Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRV--L 235 L + + F++ + +L L T +G +L++ CG G S LA H +V Sbjct: 167 LTIKTLPGVFSRDGLDVGSQLLLSTL--TPHTKGKVLDVGCGAGVLSAALASHSPKVRLT 224 Query: 236 AVEIAKPSVEAARYNIAANHVNN 258 +++ P+VEA+R +AAN V Sbjct: 225 LCDVSAPAVEASRATLAANGVEG 247 >gi|319766111|ref|YP_004131612.1| methyltransferase [Geobacillus sp. Y412MC52] gi|317110977|gb|ADU93469.1| methyltransferase [Geobacillus sp. Y412MC52] Length = 204 Score = 39.7 bits (91), Expect = 0.72, Method: Compositional matrix adjust. Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 12/91 (13%) Query: 211 GDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269 G+ L+L+ G+G + L+R +RV+ V+ + +V+ R N+AA + + + E Sbjct: 49 GNGLDLFAGSGGLGIEALSRGIERVIFVDHDRKAVQTVRKNVAACGLEKRAEIYCNDAE- 107 Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300 LK + RF IF+DPP Sbjct: 108 ----------RALKAVAKRGLRFAVIFLDPP 128 >gi|91214024|ref|YP_544010.1| 16S ribosomal RNA m2G1207 methyltransferase [Escherichia coli UTI89] gi|117626683|ref|YP_860006.1| 16S ribosomal RNA m2G1207 methyltransferase [Escherichia coli APEC O1] gi|122421235|sp|Q1R2D5|RSMC_ECOUT RecName: Full=Ribosomal RNA small subunit methyltransferase C; AltName: Full=16S rRNA m2G1207 methyltransferase; AltName: Full=rRNA (guanine-N(2)-)-methyltransferase rsmC gi|226712946|sp|A1AJP2|RSMC_ECOK1 RecName: Full=Ribosomal RNA small subunit methyltransferase C; AltName: Full=16S rRNA m2G1207 methyltransferase; AltName: Full=rRNA (guanine-N(2)-)-methyltransferase rsmC gi|91075598|gb|ABE10479.1| ribosomal RNA small subunit methyltransferase C [Escherichia coli UTI89] gi|115515807|gb|ABJ03882.1| ribosomal RNA small subunit methyltransferase C [Escherichia coli APEC O1] gi|294491814|gb|ADE90570.1| ribosomal RNA small subunit methyltransferase C [Escherichia coli IHE3034] gi|307629539|gb|ADN73843.1| 16S ribosomal RNA m2G1207 methyltransferase [Escherichia coli UM146] gi|323950544|gb|EGB46422.1| methyltransferase small domain-containing protein [Escherichia coli H252] Length = 343 Score = 39.7 bits (91), Expect = 0.72, Method: Compositional matrix adjust. Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 4/83 (4%) Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD--RVL 235 L + + F++ + +L L T +G +L++ CG G S+ ARH R+ Sbjct: 167 LTVKTLPGVFSRDGLDVGSQLLLSTL--TPHTKGKVLDVGCGAGVLSVAFARHSPKIRLT 224 Query: 236 AVEIAKPSVEAARYNIAANHVNN 258 +++ P+VEA+R +A N V Sbjct: 225 LCDVSAPAVEASRATLATNGVEG 247 >gi|296447863|ref|ZP_06889774.1| methyltransferase small [Methylosinus trichosporium OB3b] gi|296254604|gb|EFH01720.1| methyltransferase small [Methylosinus trichosporium OB3b] Length = 417 Score = 39.7 bits (91), Expect = 0.73, Method: Compositional matrix adjust. Identities = 46/188 (24%), Positives = 75/188 (39%), Gaps = 20/188 (10%) Query: 172 TVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF 231 T G TL+ +F Q A + V + G G + +L+CG G F+L LA Sbjct: 229 TAVGETLVV-PPPGAFLQATARGEAEIAARVEQGSAG--GRVADLFCGIGVFALRLAARA 285 Query: 232 DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291 +V AV+ P++E + M E R R+ R R Sbjct: 286 -QVTAVDSDAPAIE---------ALAKAARAAMLPIEA-----RTRDLFRSPLTAEELAR 330 Query: 292 FKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRD-LSILSTTHTIERLALFDQ 349 F + DPPR+G + + + ++ +SC+ S RD S+ + + DQ Sbjct: 331 FDAVIFDPPRAGAPAQAREIARSSVRRVVAVSCDAQSFARDAASLREGGYEAGVVTPIDQ 390 Query: 350 FPYTRHME 357 F ++ H+E Sbjct: 391 FRHSPHVE 398 >gi|315502657|ref|YP_004081544.1| deoxyribonuclease/rho motif-related tram [Micromonospora sp. L5] gi|315409276|gb|ADU07393.1| deoxyribonuclease/rho motif-related TRAM [Micromonospora sp. L5] Length = 436 Score = 39.7 bits (91), Expect = 0.74, Method: Compositional matrix adjust. Identities = 62/206 (30%), Positives = 87/206 (42%), Gaps = 47/206 (22%) Query: 170 RLTVAGRTLIYRQIENSFTQPNAGI-NVHMLEWVLAATKGIQG---DLLELYCGNGNFSL 225 R T AGR SFT P +G VH AA + G DLL+ G + L Sbjct: 250 RETAAGR---------SFTLPASGFWQVHP-----AAADALTGAVLDLLDPRPGETAWDL 295 Query: 226 ---------VLARHFD--RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274 LA D RV VE A V AAR N+A +++ V + + A+ Sbjct: 296 YGGAGLFAAALAERVDGARVTLVESAPDGVAAARQNLA-----DLRAVEVVAARVEAALS 350 Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDL 332 R R +D+ + +DPPRSG A V V A + Y++C+P + RD+ Sbjct: 351 RRRITG---PVDL-------VVLDPPRSGAGAAVVRGVVAAGPRAVAYVACDPAAFARDV 400 Query: 333 SILSTTH-TIERLALFDQFPYTRHME 357 + + L FD FP T+H+E Sbjct: 401 RTFAEAGWRLAALRGFDLFPMTQHVE 426 >gi|261419295|ref|YP_003252977.1| methyltransferase [Geobacillus sp. Y412MC61] gi|261375752|gb|ACX78495.1| methyltransferase [Geobacillus sp. Y412MC61] Length = 198 Score = 39.7 bits (91), Expect = 0.74, Method: Compositional matrix adjust. Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 12/91 (13%) Query: 211 GDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269 G+ L+L+ G+G + L+R +RV+ V+ + +V+ R N+AA + + + E Sbjct: 43 GNGLDLFAGSGGLGIEALSRGIERVIFVDHDRKAVQTVRKNVAACGLEKRAEIYCNDAE- 101 Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300 LK + RF IF+DPP Sbjct: 102 ----------RALKAVAKRGLRFAVIFLDPP 122 >gi|329926113|ref|ZP_08280704.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Paenibacillus sp. HGF5] gi|328939387|gb|EGG35741.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Paenibacillus sp. HGF5] Length = 414 Score = 39.7 bits (91), Expect = 0.74, Method: Compositional matrix adjust. Identities = 19/43 (44%), Positives = 28/43 (65%), Gaps = 2/43 (4%) Query: 208 GIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248 G+ G+ +++ YCG G SL LA+H +V VEI K ++E AR Sbjct: 372 GLTGEETVIDAYCGIGTISLFLAQHAKKVYGVEIVKEAIEDAR 414 >gi|297530735|ref|YP_003672010.1| methyltransferase [Geobacillus sp. C56-T3] gi|297253987|gb|ADI27433.1| methyltransferase [Geobacillus sp. C56-T3] Length = 204 Score = 39.7 bits (91), Expect = 0.76, Method: Compositional matrix adjust. Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 12/91 (13%) Query: 211 GDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269 G+ L+L+ G+G + L+R +RV+ V+ + +V+ R N+AA + + + E Sbjct: 49 GNGLDLFAGSGGLGIEALSRGIERVIFVDHDRKAVQTVRKNVAACGLEKRAEIYCNDAE- 107 Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300 LK + RF IF+DPP Sbjct: 108 ----------RALKAVAKRGLRFAVIFLDPP 128 >gi|221194743|ref|ZP_03567800.1| NusB/NOL1/NOP2/sun family protein [Atopobium rimae ATCC 49626] gi|221185647|gb|EEE18037.1| NusB/NOL1/NOP2/sun family protein [Atopobium rimae ATCC 49626] Length = 480 Score = 39.7 bits (91), Expect = 0.76, Method: Compositional matrix adjust. Identities = 37/139 (26%), Positives = 63/139 (45%), Gaps = 19/139 (13%) Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLAR------HFDRVLAVEIAKPSVEAARYNIAANH 255 L A G + LLE+ G G +++L + H + A++I VE AR + Sbjct: 245 ALLALSGREKTLLEIGQGRGTKTILLQQNAALLNHVLHITAIDIDPQKVEIARKRLVEAA 304 Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH---SYRFKTIFVDPPRSGLDDATVGMV 312 V+N +++S F A RE N + ++ F T+F+D P SG G + Sbjct: 305 VDN----QVTSVVFNAAELGAREANSEPPCKLPGELAHTFDTVFIDAPCSG-----AGTL 355 Query: 313 QAYPHILYISCNPDSLCRD 331 + +P I + S + ++C D Sbjct: 356 RRHPEIGW-SLDEGAVCSD 373 >gi|297623419|ref|YP_003704853.1| methyltransferase small [Truepera radiovictrix DSM 17093] gi|297164599|gb|ADI14310.1| methyltransferase small [Truepera radiovictrix DSM 17093] Length = 402 Score = 39.7 bits (91), Expect = 0.77, Method: Compositional matrix adjust. Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 9/91 (9%) Query: 210 QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269 +G L+++C +G F+L LAR D V+AV+ + ++ A N + V Sbjct: 223 RGRALDVFCYHGGFALQLARRADEVVAVDSSAAALAELERGAAENGPEVARRV------- 275 Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300 + RR F L+ RF T+ +DPP Sbjct: 276 --STRRGDAFELLRAAVRAGERFDTVVLDPP 304 >gi|269216929|ref|ZP_06160783.1| methyltransferase domain protein [Slackia exigua ATCC 700122] gi|269129736|gb|EEZ60820.1| methyltransferase domain protein [Slackia exigua ATCC 700122] Length = 279 Score = 39.7 bits (91), Expect = 0.77, Method: Compositional matrix adjust. Identities = 18/51 (35%), Positives = 30/51 (58%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVR 263 +L++ CG+G + L LA V+ ++I+ +EAAR A V NV+ V+ Sbjct: 69 VLDIGCGSGIYGLALASRVGEVVGIDISPKMIEAAREKACALDVRNVRFVQ 119 >gi|299533092|ref|ZP_07046477.1| ribosomal protein L11 methyltransferase [Comamonas testosteroni S44] gi|298718869|gb|EFI59841.1| ribosomal protein L11 methyltransferase [Comamonas testosteroni S44] Length = 296 Score = 39.7 bits (91), Expect = 0.78, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 1/60 (1%) Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAANHVN 257 L W+ KG G L+ CG+G ++ A+ V AV+I +VE+ YN +ANHV Sbjct: 154 LRWIARQPKGTLGRTLDYGCGSGILAIGAAKFGATDVDAVDIDPAAVESTNYNTSANHVE 213 >gi|229003116|ref|ZP_04160963.1| hypothetical protein bmyco0002_1050 [Bacillus mycoides Rock1-4] gi|228758131|gb|EEM07329.1| hypothetical protein bmyco0002_1050 [Bacillus mycoides Rock1-4] Length = 199 Score = 39.7 bits (91), Expect = 0.78, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 209 IQGDLLELYCGNGNFSLVLARHFDR--VLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265 I+GD+L++ CG G L LA+ F V V++ + ++ A+ N A N V NV+I + S Sbjct: 58 IKGDVLDVGCGYGPIGLSLAKEFQERSVHMVDVNERALGLAKENAANNKVENVRIFQSS 116 >gi|222036112|emb|CAP78857.1| ribosomal RNA small subunit methyltransferase C [Escherichia coli LF82] gi|312948999|gb|ADR29826.1| 16S ribosomal RNA m2G1207 methyltransferase [Escherichia coli O83:H1 str. NRG 857C] Length = 343 Score = 39.7 bits (91), Expect = 0.78, Method: Compositional matrix adjust. Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 4/83 (4%) Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD--RVL 235 L + + F++ + +L L T +G +L++ CG G S+ ARH R+ Sbjct: 167 LTVKTLPGVFSRDGLDVGSQLLLSTL--TPHTKGKVLDVGCGAGVLSVAFARHSPKIRLT 224 Query: 236 AVEIAKPSVEAARYNIAANHVNN 258 +++ P+VEA+R +A N V Sbjct: 225 LCDVSAPAVEASRATLATNGVEG 247 >gi|228989310|ref|ZP_04149301.1| hypothetical protein bpmyx0001_870 [Bacillus pseudomycoides DSM 12442] gi|228770388|gb|EEM18961.1| hypothetical protein bpmyx0001_870 [Bacillus pseudomycoides DSM 12442] Length = 213 Score = 39.7 bits (91), Expect = 0.79, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 209 IQGDLLELYCGNGNFSLVLARHFDR--VLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265 I+GD+L++ CG G L LA+ F V V++ + ++ A+ N A N V NV+I + S Sbjct: 72 IKGDVLDVGCGYGPIGLSLAKEFQERSVHMVDVNERALGLAKENAANNKVENVRIFQSS 130 >gi|228995491|ref|ZP_04155159.1| hypothetical protein bmyco0003_950 [Bacillus mycoides Rock3-17] gi|228764220|gb|EEM13099.1| hypothetical protein bmyco0003_950 [Bacillus mycoides Rock3-17] Length = 213 Score = 39.7 bits (91), Expect = 0.79, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 209 IQGDLLELYCGNGNFSLVLARHFDR--VLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265 I+GD+L++ CG G L LA+ F V V++ + ++ A+ N A N V NV+I + S Sbjct: 72 IKGDVLDVGCGYGPIGLSLAKEFQERSVHMVDVNERALGLAKENAANNKVENVRIFQSS 130 >gi|71409977|ref|XP_807306.1| proliferator-activated receptor-interacting protein (PRIP) interacting protein (PIMT) [Trypanosoma gi|70871278|gb|EAN85455.1| proliferator-activated receptor-interacting protein (PRIP) interacting protein (PIMT), putative [Trypanosoma cruzi] Length = 250 Score = 39.7 bits (91), Expect = 0.79, Method: Compositional matrix adjust. Identities = 17/46 (36%), Positives = 32/46 (69%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN 258 +L+L+CG G ++ LAR +++V+AV+I ++EAA+ N+ V + Sbjct: 64 VLDLFCGCGGDTVQLARVYEKVVAVDIDPDAIEAAKKNVEVYGVGD 109 >gi|264680219|ref|YP_003280129.1| ribosomal protein L11 methyltransferase [Comamonas testosteroni CNB-2] gi|262210735|gb|ACY34833.1| ribosomal protein L11 methyltransferase [Comamonas testosteroni CNB-2] Length = 298 Score = 39.7 bits (91), Expect = 0.81, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 1/60 (1%) Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAANHVN 257 L W+ KG G L+ CG+G ++ A+ V AV+I +VE+ YN +ANHV Sbjct: 156 LRWIARQPKGTLGRTLDYGCGSGILAIGAAKFGATDVDAVDIDPAAVESTNYNTSANHVE 215 >gi|167627297|ref|YP_001677797.1| HemK family modification methylase [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|167597298|gb|ABZ87296.1| modification methylase, HemK family [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 285 Score = 39.7 bits (91), Expect = 0.86, Method: Compositional matrix adjust. Identities = 33/118 (27%), Positives = 55/118 (46%), Gaps = 25/118 (21%) Query: 200 EWVLAAT------KGIQGDLLELYCGNGNFSLVLARHFDR--VLAVEIAKPSVEAARYNI 251 E V+AA K Q +L+L G+G +L LA + V+AV++ +++ A+ N Sbjct: 100 EAVVAAVLDDIQDKNAQLKILDLGTGSGAIALALAEELPKSQVVAVDLYSKTLDVAKKNA 159 Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309 AN + NV EF Q+ E ++ + +F I +PP +DDA + Sbjct: 160 LANKIVNV--------EFMQSSWYE---------NLDATKFDIIVSNPPYIDVDDANI 200 >gi|322825679|gb|EFZ30569.1| proliferator-activated receptor-interacting protein interacting protein, putative [Trypanosoma cruzi] Length = 250 Score = 39.7 bits (91), Expect = 0.87, Method: Compositional matrix adjust. Identities = 17/46 (36%), Positives = 32/46 (69%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN 258 +L+L+CG G ++ LAR +++V+AV+I ++EAA+ N+ V + Sbjct: 64 VLDLFCGCGGDTVQLARVYEKVVAVDIDPDAIEAAKKNVEVYGVGD 109 >gi|146310194|ref|YP_001175268.1| 16S ribosomal RNA m2G1207 methyltransferase [Enterobacter sp. 638] gi|226712951|sp|A4W687|RSMC_ENT38 RecName: Full=Ribosomal RNA small subunit methyltransferase C; AltName: Full=16S rRNA m2G1207 methyltransferase; AltName: Full=rRNA (guanine-N(2)-)-methyltransferase rsmC gi|145317070|gb|ABP59217.1| 16S rRNA m(2)G 1207 methyltransferase [Enterobacter sp. 638] Length = 342 Score = 39.3 bits (90), Expect = 0.89, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 2/55 (3%) Query: 206 TKGIQGDLLELYCGNGNFSLVLARHFDRV--LAVEIAKPSVEAARYNIAANHVNN 258 T +G +L++ CG G S VLA H +V +++ P+VEA+R +AAN + Sbjct: 193 TPHTKGKVLDVGCGAGVLSAVLASHSPKVRLTLSDVSAPAVEASRATLAANGLEG 247 >gi|218194201|gb|EEC76628.1| hypothetical protein OsI_14559 [Oryza sativa Indica Group] Length = 805 Score = 39.3 bits (90), Expect = 0.91, Method: Compositional matrix adjust. Identities = 18/36 (50%), Positives = 23/36 (63%), Gaps = 3/36 (8%) Query: 296 FVDPPRSGLDDATVGMVQAYPHI---LYISCNPDSL 328 VDPPR GL + ++ +P I +YISCNPDSL Sbjct: 699 IVDPPRVGLHPTVIKALRTHPRIRRLVYISCNPDSL 734 >gi|260803097|ref|XP_002596428.1| hypothetical protein BRAFLDRAFT_130336 [Branchiostoma floridae] gi|229281683|gb|EEN52440.1| hypothetical protein BRAFLDRAFT_130336 [Branchiostoma floridae] Length = 774 Score = 39.3 bits (90), Expect = 0.92, Method: Compositional matrix adjust. Identities = 17/47 (36%), Positives = 30/47 (63%), Gaps = 3/47 (6%) Query: 214 LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK 260 +++ CG+G S +LA HF VL +++++P + A N N +NNV+ Sbjct: 327 VDIGCGSGQSSEILAPHFQHVLGIDVSEPQIAMASAN---NKLNNVE 370 Score = 39.3 bits (90), Expect = 0.92, Method: Compositional matrix adjust. Identities = 17/47 (36%), Positives = 30/47 (63%), Gaps = 3/47 (6%) Query: 214 LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK 260 +++ CG+G S +LA HF VL +++++P + A N N +NNV+ Sbjct: 555 VDIGCGSGQSSEILAPHFQHVLGIDVSEPQIAMASAN---NKLNNVE 598 >gi|169335809|ref|ZP_02863002.1| hypothetical protein ANASTE_02235 [Anaerofustis stercorihominis DSM 17244] gi|169258547|gb|EDS72513.1| hypothetical protein ANASTE_02235 [Anaerofustis stercorihominis DSM 17244] Length = 279 Score = 39.3 bits (90), Expect = 0.92, Method: Compositional matrix adjust. Identities = 34/136 (25%), Positives = 62/136 (45%), Gaps = 23/136 (16%) Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRV--LAVEIAKPSVEAARYNIAANH 255 ++E+++ KGI D+LE+ G+G S+ A++ + V L V+I + ++ A NI ++ Sbjct: 100 IVEYMIEHFKGITLDILEIGVGSGCISISTAKYLENVNILGVDINEKALSIANKNIEYHN 159 Query: 256 VNN-VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP--RSGLDDATVGMV 312 V++ VK +R E + +F I +PP R + + V Sbjct: 160 VDDRVKFIRSDIYENVEG------------------KFDVIISNPPYIRKDIIETLEDDV 201 Query: 313 QAYPHILYISCNPDSL 328 + Y IL + D L Sbjct: 202 KKYEPILALDGGEDGL 217 >gi|163803407|ref|ZP_02197282.1| hypothetical protein 1103602000602_AND4_16474 [Vibrio sp. AND4] gi|159172811|gb|EDP57656.1| hypothetical protein AND4_16474 [Vibrio sp. AND4] Length = 206 Score = 39.3 bits (90), Expect = 0.98, Method: Compositional matrix adjust. Identities = 27/106 (25%), Positives = 48/106 (45%), Gaps = 17/106 (16%) Query: 210 QGDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268 Q L+L+ G+G A R ++V +E+ + + + N+A+ + NN++IV + Sbjct: 60 QAKCLDLFAGSGGLGFESASRQAEQVTMIELNPQAFQQLQKNVASLNANNIQIVNTDAIH 119 Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGMVQ 313 F Q +F+DPP R GL D TV +++ Sbjct: 120 FLQQ---------------PGTPHHVVFIDPPFRKGLLDETVTLLE 150 >gi|38346207|emb|CAD39345.2| OSJNBa0094O15.14 [Oryza sativa Japonica Group] gi|222628241|gb|EEE60373.1| hypothetical protein OsJ_13507 [Oryza sativa Japonica Group] Length = 865 Score = 39.3 bits (90), Expect = 0.99, Method: Compositional matrix adjust. Identities = 18/36 (50%), Positives = 23/36 (63%), Gaps = 3/36 (8%) Query: 296 FVDPPRSGLDDATVGMVQAYPHI---LYISCNPDSL 328 VDPPR GL + ++ +P I +YISCNPDSL Sbjct: 759 IVDPPRVGLHPTVIKALRTHPRIRRLVYISCNPDSL 794 >gi|91227503|ref|ZP_01261840.1| hypothetical protein V12G01_09647 [Vibrio alginolyticus 12G01] gi|269968644|ref|ZP_06182641.1| conserved hypothetical protein [Vibrio alginolyticus 40B] gi|91188527|gb|EAS74819.1| hypothetical protein V12G01_09647 [Vibrio alginolyticus 12G01] gi|269826731|gb|EEZ81068.1| conserved hypothetical protein [Vibrio alginolyticus 40B] Length = 199 Score = 39.3 bits (90), Expect = 1.0, Method: Compositional matrix adjust. Identities = 28/106 (26%), Positives = 50/106 (47%), Gaps = 17/106 (16%) Query: 210 QGDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268 Q L+L+ G+G A R ++V VE+ + + + N+A+ + NN+++V + Sbjct: 60 QAKCLDLFAGSGGLGFESASRQAEQVTMVELNPQAFQQLQKNVASLNANNIQVVNTDALS 119 Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGMVQ 313 F LK + +F+DPP R GL D TV +++ Sbjct: 120 F------------LKQPGSAHH---VVFIDPPFRKGLLDETVALLE 150 >gi|242072140|ref|XP_002446006.1| hypothetical protein SORBIDRAFT_06g000450 [Sorghum bicolor] gi|241937189|gb|EES10334.1| hypothetical protein SORBIDRAFT_06g000450 [Sorghum bicolor] Length = 862 Score = 39.3 bits (90), Expect = 1.0, Method: Compositional matrix adjust. Identities = 19/46 (41%), Positives = 29/46 (63%), Gaps = 5/46 (10%) Query: 288 HSYRFKTI--FVDPPRSGLDDATVGMVQAYPHI---LYISCNPDSL 328 ++ +FK + VDPPR GL + ++ +P I +YISCNP+SL Sbjct: 746 NACQFKNVVAIVDPPRVGLHPTVIKALRTHPRIRRLVYISCNPESL 791 >gi|219113673|ref|XP_002186420.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|209583270|gb|ACI65890.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 475 Score = 39.3 bits (90), Expect = 1.1, Method: Compositional matrix adjust. Identities = 28/76 (36%), Positives = 35/76 (46%), Gaps = 5/76 (6%) Query: 295 IFVDPPRSGLDDATVGMVQ--AYPHIL-YISCNPDSLCRDLSILSTTHTIERLALFDQ-- 349 I VDPPR GLDD +G + P IL Y+SC D+ RD L E L Sbjct: 395 IVVDPPRKGLDDVVLGAMAEVTRPQILVYVSCGFDAFQRDCKYLVQHGQWEVLHAEGHIL 454 Query: 350 FPYTRHMECGVLLVRK 365 FP + +E VR+ Sbjct: 455 FPGSDAIETLAFFVRR 470 >gi|261334706|emb|CBH17700.1| proliferator-activated receptor-interacting protein (PRIP) interacting protein (PIMT), putative,pseudogene [Trypanosoma brucei gambiense DAL972] Length = 251 Score = 39.3 bits (90), Expect = 1.1, Method: Compositional matrix adjust. Identities = 17/41 (41%), Positives = 30/41 (73%) Query: 210 QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN 250 +G L+L+CG G ++ LA+ F++V+AV+I ++EAA+ N Sbjct: 61 KGCCLDLFCGCGGDTVQLAQVFEKVIAVDIDPDAIEAAKKN 101 >gi|213857923|ref|ZP_03384894.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 281 Score = 39.3 bits (90), Expect = 1.1, Method: Compositional matrix adjust. Identities = 25/68 (36%), Positives = 34/68 (50%), Gaps = 7/68 (10%) Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 F Q N +N M LEW+ + +L+L+CG GNF+L LA V+ VE + Sbjct: 209 FIQVNEAVNQQMVARALEWLDVRA---EDRVLDLFCGMGNFTLPLATRAASVVGVEGVQA 265 Query: 243 SVEAARYN 250 VE R N Sbjct: 266 LVEKGREN 273 >gi|330994335|ref|ZP_08318263.1| hypothetical protein SXCC_04228 [Gluconacetobacter sp. SXCC-1] gi|329758802|gb|EGG75318.1| hypothetical protein SXCC_04228 [Gluconacetobacter sp. SXCC-1] Length = 251 Score = 39.3 bits (90), Expect = 1.1, Method: Compositional matrix adjust. Identities = 21/67 (31%), Positives = 37/67 (55%), Gaps = 1/67 (1%) Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262 L A KG++ +L+L CG G+ + LA H + V+ +I ++A + A +NNV V Sbjct: 35 LVAGKGLR-RVLDLGCGGGHVTYRLAPHVEEVVPCDITASMLDAVAHEAARQDLNNVATV 93 Query: 263 RMSSKEF 269 + ++E Sbjct: 94 QAPAEEL 100 >gi|296123662|ref|YP_003631440.1| methyltransferase type 11 [Planctomyces limnophilus DSM 3776] gi|296016002|gb|ADG69241.1| Methyltransferase type 11 [Planctomyces limnophilus DSM 3776] Length = 254 Score = 39.3 bits (90), Expect = 1.1, Method: Compositional matrix adjust. Identities = 20/39 (51%), Positives = 25/39 (64%) Query: 210 QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248 QGD+LE+ CG G S LAR V AV+IA+ +E AR Sbjct: 66 QGDVLEIGCGVGRLSHALARRTRHVFAVDIAQKLLEEAR 104 >gi|170750219|ref|YP_001756479.1| (uracil-5)-methyltransferase [Methylobacterium radiotolerans JCM 2831] gi|170656741|gb|ACB25796.1| (uracil-5)-methyltransferase [Methylobacterium radiotolerans JCM 2831] Length = 425 Score = 39.3 bits (90), Expect = 1.1, Method: Compositional matrix adjust. Identities = 43/185 (23%), Positives = 81/185 (43%), Gaps = 15/185 (8%) Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 F Q A + + LAA + +L+ G G +L +AR V AVE + Sbjct: 251 GGFLQATAAGQATLCDLTLAALGPRVRRVADLFAGCGPLTLAIARTAA-VHAVE--SDAA 307 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 A + AA + ++ R++S+ R+ R + F + DPPR+G Sbjct: 308 ALAGLDRAARAASGLR--RITSER--------RDLFRRPLLPTELDPFDAVVFDPPRAGA 357 Query: 305 DDATVGMVQA-YPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLL 362 + + A P ++ ++C+ + RD + L + + +E + DQF ++ H+E + Sbjct: 358 EAQARQIAAARVPLVIGVACDAGTFARDAATLVAGGYRLETVTPVDQFRHSGHVEMVGVF 417 Query: 363 VRKPS 367 R+P+ Sbjct: 418 RREPA 422 >gi|239825684|ref|YP_002948308.1| methyltransferase small [Geobacillus sp. WCH70] gi|239805977|gb|ACS23042.1| methyltransferase small [Geobacillus sp. WCH70] Length = 200 Score = 39.3 bits (90), Expect = 1.1, Method: Compositional matrix adjust. Identities = 35/136 (25%), Positives = 54/136 (39%), Gaps = 21/136 (15%) Query: 171 LTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARH 230 T+ G L + F++ +L K + GD L++ CG G L +A+ Sbjct: 21 FTLRGNELTFTTDSGVFSKREVDFGTRLLIETFEEPK-VDGDFLDVGCGYGPIGLSIAKA 79 Query: 231 FDR--VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288 F V ++I K ++E A N ANH+ N I S F Q + Sbjct: 80 FPNRHVDMIDINKRALELANENKHANHITNASIYE--SDLFAQVGDK------------- 124 Query: 289 SYRFKTIFVDPP-RSG 303 +F I +PP R+G Sbjct: 125 --KFAAILTNPPIRAG 138 >gi|119623240|gb|EAX02835.1| chromosome X open reading frame 34, isoform CRA_d [Homo sapiens] Length = 289 Score = 39.3 bits (90), Expect = 1.1, Method: Compositional matrix adjust. Identities = 51/229 (22%), Positives = 89/229 (38%), Gaps = 52/229 (22%) Query: 177 TLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNF----------- 223 +L R ++F Q N ML + G+ D LL++ CG G + Sbjct: 72 SLKIRISPDAFFQINTA-GAEMLYRTVGELTGVNSDTILLDICCGTGKWKPRAESACCSA 130 Query: 224 --SLVLA-----------RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270 +LV +H RVL +E+ + +VE AR+ A N + N + +++ Sbjct: 131 PKALVACGGGRGEVVVVVQHTSRVLGIELLEQAVEDARWTAAFNGITNSEFHTGQAEKIL 190 Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHI---LYISC---- 323 + + +E D S V+P R+GL + ++ + I +++SC Sbjct: 191 PGLLKSKE-------DGQSI---VAVVNPARAGLHYKVIQAIRNFRAIHTLVFVSCKLHG 240 Query: 324 ----NPDSLC----RDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 N LC +L +++ D FP+T H E +L R Sbjct: 241 ESTRNVIELCCPPDPAKKLLGEPFVLQQAVPVDLFPHTPHCELVLLFTR 289 >gi|239623795|ref|ZP_04666826.1| pantetheine-phosphate adenylyltransferase [Clostridiales bacterium 1_7_47_FAA] gi|239521826|gb|EEQ61692.1| pantetheine-phosphate adenylyltransferase [Clostridiales bacterium 1_7_47FAA] Length = 185 Score = 39.3 bits (90), Expect = 1.1, Method: Compositional matrix adjust. Identities = 34/148 (22%), Positives = 64/148 (43%), Gaps = 16/148 (10%) Query: 174 AGRTLIYRQIENSFTQPNAG-INVHMLEWVLAATKGIQGDLLELYCGNGNFSL-VLARHF 231 + R L+ + ++ T+P I + + G Q L+L+ G+G + L+R Sbjct: 7 SARRLLLKTVDGMDTRPTTDRIKETLFNMLQPQIPGCQ--FLDLFSGSGAIGIEALSRGA 64 Query: 232 DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291 D + +E +V R N+ + +V M+ T LK ++ H+YR Sbjct: 65 DLAVMIENNPQAVACIRENLGTTRLEERAVV-MACDVLTG----------LKRLEGHNYR 113 Query: 292 FKTIFVDPP-RSGLDDATVGMVQAYPHI 318 F +F+DPP G ++ +G + P + Sbjct: 114 FDLVFMDPPYHHGYEEQVLGYLAHSPMV 141 >gi|283778024|ref|YP_003368779.1| methyltransferase small [Pirellula staleyi DSM 6068] gi|283436477|gb|ADB14919.1| methyltransferase small [Pirellula staleyi DSM 6068] Length = 434 Score = 39.3 bits (90), Expect = 1.1, Method: Compositional matrix adjust. Identities = 34/121 (28%), Positives = 51/121 (42%), Gaps = 24/121 (19%) Query: 203 LAATKGIQG-DLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNNV 259 LA K G +L+++C G F++ +RH VL V+ +K +V A+ N N + NV Sbjct: 238 LAVAKYFAGRKVLDMFCYTGGFAMNASRHGQAAEVLGVDTSKRAVAQAQKNAEINGLTNV 297 Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-----RSGLDDATVGMVQA 314 F L+ +F I +DPP RS +D A +QA Sbjct: 298 TFEAGDG------------FQSLEKFATEGRKFDAIVLDPPKFARSRSQVDQA----IQA 341 Query: 315 Y 315 Y Sbjct: 342 Y 342 >gi|297722731|ref|NP_001173729.1| Os04g0105000 [Oryza sativa Japonica Group] gi|255675113|dbj|BAH92457.1| Os04g0105000 [Oryza sativa Japonica Group] Length = 404 Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust. Identities = 18/36 (50%), Positives = 23/36 (63%), Gaps = 3/36 (8%) Query: 296 FVDPPRSGLDDATVGMVQAYPHI---LYISCNPDSL 328 VDPPR GL + ++ +P I +YISCNPDSL Sbjct: 298 IVDPPRVGLHPTVIKALRTHPRIRRLVYISCNPDSL 333 >gi|149175244|ref|ZP_01853866.1| putative methyltransferase [Planctomyces maris DSM 8797] gi|148845853|gb|EDL60194.1| putative methyltransferase [Planctomyces maris DSM 8797] Length = 260 Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 32/60 (53%) Query: 211 GDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270 G LL+L CG G ++ LA F+ VLAV+ + AA+ N++ S+++F+ Sbjct: 38 GRLLDLGCGTGELAIRLASRFEEVLAVDPDAEMLAAAQQKAREQQATNIQWRNQSAEQFS 97 >gi|289193240|ref|YP_003459181.1| Methyltransferase type 11 [Methanocaldococcus sp. FS406-22] gi|288939690|gb|ADC70445.1| Methyltransferase type 11 [Methanocaldococcus sp. FS406-22] Length = 277 Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust. Identities = 26/110 (23%), Positives = 54/110 (49%), Gaps = 10/110 (9%) Query: 154 RANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG-D 212 R K KI D+++ ++L++ +I R N G +E + +G Sbjct: 22 RKGKPKITYDKEFF-KKLSIDSSNIIKRN--------NYGYGKKAVEILKENLEGFSNFT 72 Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262 +LE+ G G ++ LA+ +V+A+E ++ ++ + N+ N + NV+I+ Sbjct: 73 VLEIGTGAGTLTIPLAKEVKKVIAIEKSEMNIRLLKENLRENGIENVEII 122 >gi|138893776|ref|YP_001124229.1| 16S rRNA m(2)G 1207 methyltransferase [Geobacillus thermodenitrificans NG80-2] gi|196251113|ref|ZP_03149792.1| methyltransferase small [Geobacillus sp. G11MC16] gi|134265289|gb|ABO65484.1| 16S rRNA m(2)G 1207 methyltransferase [Geobacillus thermodenitrificans NG80-2] gi|196209354|gb|EDY04134.1| methyltransferase small [Geobacillus sp. G11MC16] Length = 200 Score = 38.9 bits (89), Expect = 1.3, Method: Compositional matrix adjust. Identities = 28/98 (28%), Positives = 47/98 (47%), Gaps = 20/98 (20%) Query: 209 IQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266 + GDLL++ CG G L LA+ F RV +++ + ++E A N AN ++N I + S Sbjct: 58 VAGDLLDVGCGYGPIGLALAKSFPDRRVQMIDVNERALELAEENKQANGIHNAIIYK--S 115 Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSG 303 F++ + RF + +PP R+G Sbjct: 116 DLFSE---------------VGEQRFAAVITNPPIRAG 138 >gi|304311157|ref|YP_003810755.1| Non-ribosomal peptide synthetase modules and related proteins [gamma proteobacterium HdN1] gi|301796890|emb|CBL45103.1| Non-ribosomal peptide synthetase modules and related proteins [gamma proteobacterium HdN1] Length = 5494 Score = 38.9 bits (89), Expect = 1.3, Method: Compositional matrix adjust. Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 9/79 (11%) Query: 77 MPGSLLINALMIEMMATIRLE--PLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWREC 134 +P + L+ IE+M + L+ PL RA+LF++ ++A+ TLI H ++ D W Sbjct: 2736 LPETELMRLAAIELMTSFELDRGPLFRARLFRV-----AENEAVFTLIIHHIVTDGW-SM 2789 Query: 135 AIRLRDALHARKYQIQLIG 153 I +RD L QI +G Sbjct: 2790 GILIRD-LATAYVQIHALG 2807 >gi|229067866|ref|ZP_04201183.1| hypothetical protein bcere0025_900 [Bacillus cereus F65185] gi|229176701|ref|ZP_04304105.1| hypothetical protein bcere0005_880 [Bacillus cereus 172560W] gi|228606744|gb|EEK64161.1| hypothetical protein bcere0005_880 [Bacillus cereus 172560W] gi|228715225|gb|EEL67084.1| hypothetical protein bcere0025_900 [Bacillus cereus F65185] Length = 213 Score = 38.9 bits (89), Expect = 1.3, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 2/62 (3%) Query: 209 IQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266 I+GD+L++ CG G L LA+ F V V++ + ++ A+ N A N + N++I + S Sbjct: 72 IKGDILDVGCGYGPIGLSLAKEFQGREVHMVDVNERALGLAKENAANNKIENIRIFQSSV 131 Query: 267 KE 268 E Sbjct: 132 YE 133 >gi|322514825|ref|ZP_08067844.1| 23S rRNA (uracil-5-)-methyltransferase [Actinobacillus ureae ATCC 25976] gi|322119207|gb|EFX91348.1| 23S rRNA (uracil-5-)-methyltransferase [Actinobacillus ureae ATCC 25976] Length = 59 Score = 38.9 bits (89), Expect = 1.3, Method: Composition-based stats. Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 1/48 (2%) Query: 318 ILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 I+Y+ CNP +L RD ++ + +++ A+ D FP+T H+E L + Sbjct: 12 IVYVFCNPATLVRDAEKLIQAGYKLQKAAMIDMFPHTGHLESISLFTK 59 >gi|108803688|ref|YP_643625.1| SAM-dependent methyltransferase [Rubrobacter xylanophilus DSM 9941] gi|108764931|gb|ABG03813.1| SAM-dependent methyltransferase [Rubrobacter xylanophilus DSM 9941] Length = 391 Score = 38.9 bits (89), Expect = 1.3, Method: Compositional matrix adjust. Identities = 26/98 (26%), Positives = 46/98 (46%), Gaps = 12/98 (12%) Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262 LAA + +G +L+++ G F+L AR V AV+ + ++E AR N N + N+ V Sbjct: 211 LAAGRHARGRVLDVFSYGGGFALHAARRAASVEAVDSSAAALEQARENARLNGLGNLSFV 270 Query: 263 RMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300 ++ F+ L+ + T+ +DPP Sbjct: 271 EANA------------FDLLRARSDAGEAYDTVILDPP 296 >gi|256421554|ref|YP_003122207.1| methyltransferase type 11 [Chitinophaga pinensis DSM 2588] gi|256036462|gb|ACU60006.1| Methyltransferase type 11 [Chitinophaga pinensis DSM 2588] Length = 280 Score = 38.9 bits (89), Expect = 1.4, Method: Compositional matrix adjust. Identities = 20/51 (39%), Positives = 30/51 (58%) Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262 D+L+L CG+G +L AR RVL V+IA+ V A I + N++I+ Sbjct: 48 DVLDLGCGDGTTALPSARLGARVLGVDIARNLVAAGNKRIEEEGLTNIRIL 98 >gi|228937403|ref|ZP_04100049.1| hypothetical protein bthur0008_880 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228970289|ref|ZP_04130948.1| hypothetical protein bthur0003_870 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228976859|ref|ZP_04137271.1| hypothetical protein bthur0002_870 [Bacillus thuringiensis Bt407] gi|228782829|gb|EEM30995.1| hypothetical protein bthur0002_870 [Bacillus thuringiensis Bt407] gi|228789398|gb|EEM37318.1| hypothetical protein bthur0003_870 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228822236|gb|EEM68218.1| hypothetical protein bthur0008_880 [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 213 Score = 38.9 bits (89), Expect = 1.4, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 2/62 (3%) Query: 209 IQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266 I+GD+L++ CG G L LA+ F V V++ + ++ A+ N A N + N++I + S Sbjct: 72 IKGDILDVGCGYGPIGLSLAKEFQGCEVHMVDVNERALGLAKENAANNRIENIRIFQSSV 131 Query: 267 KE 268 E Sbjct: 132 YE 133 >gi|268325126|emb|CBH38714.1| conserved hypothetical protein, SAM dependent methyltransferase family [uncultured archaeon] Length = 272 Score = 38.9 bits (89), Expect = 1.4, Method: Compositional matrix adjust. Identities = 18/60 (30%), Positives = 37/60 (61%) Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262 L+ G ++LE+ G+G ++ LA+ +V+A+E ++ +V+ + NI + V NV+I+ Sbjct: 56 LSEILGENFEVLEIGAGSGTLTIPLAKKIKKVVAIESSEMAVDYLKRNIKESRVENVEII 115 >gi|124022602|ref|YP_001016909.1| SAM-binding motif-containing protein [Prochlorococcus marinus str. MIT 9303] gi|123962888|gb|ABM77644.1| SAM (and some other nucleotide) binding motif [Prochlorococcus marinus str. MIT 9303] Length = 255 Score = 38.9 bits (89), Expect = 1.4, Method: Compositional matrix adjust. Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 7/80 (8%) Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEI 239 + + S+ Q + W+ + Q ++ CG+G SL LARHFDRV A ++ Sbjct: 12 FDSVAASYAQQRPHYPESLFAWISSKASSHQ-RCWDVACGSGQASLGLARHFDRVDATDL 70 Query: 240 AKPSVEAA------RYNIAA 253 + V AA Y +AA Sbjct: 71 SPAQVAAAPAHSNIHYQVAA 90 >gi|253999017|ref|YP_003051080.1| Cyclopropane-fatty-acyl-phospholipid synthase [Methylovorus sp. SIP3-4] gi|253985696|gb|ACT50553.1| Cyclopropane-fatty-acyl-phospholipid synthase [Methylovorus sp. SIP3-4] Length = 348 Score = 38.9 bits (89), Expect = 1.4, Method: Compositional matrix adjust. Identities = 24/89 (26%), Positives = 44/89 (49%), Gaps = 8/89 (8%) Query: 212 DLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269 +LEL CG G+ +L +A+HF R+ AV +K E + N++++ EF Sbjct: 123 SILELGCGWGSLTLWMAKHFPSSRITAVSNSKSQREYIMSEALKRGLPNIQVITCDMNEF 182 Query: 270 TQAMRREREFNRLKDIDI--HSYRFKTIF 296 M +F+R+ +++ H + T+F Sbjct: 183 NPGM----QFDRIVSVEMFEHMRNYDTMF 207 >gi|75763956|ref|ZP_00743584.1| 16S rRNA m(2)G 1207 methyltransferase [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74488558|gb|EAO52146.1| 16S rRNA m(2)G 1207 methyltransferase [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 213 Score = 38.9 bits (89), Expect = 1.4, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 2/62 (3%) Query: 209 IQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266 I+GD+L++ CG G L LA+ F V V++ + ++ A+ N A N + N++I + S Sbjct: 72 IKGDILDVGCGYGPIGLSLAKEFQGREVHMVDVNERALGLAKENAANNKIENIRIFQSSV 131 Query: 267 KE 268 E Sbjct: 132 YE 133 >gi|229188386|ref|ZP_04315434.1| hypothetical protein bcere0002_880 [Bacillus cereus ATCC 10876] gi|228595060|gb|EEK52831.1| hypothetical protein bcere0002_880 [Bacillus cereus ATCC 10876] Length = 213 Score = 38.9 bits (89), Expect = 1.4, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 2/62 (3%) Query: 209 IQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266 I+GD+L++ CG G L LA+ F V V++ + ++ A+ N A N + N++I + S Sbjct: 72 IKGDILDVGCGYGPIGLSLAKEFQGREVHMVDVNERALGLAKENAANNKIENIRIFQSSV 131 Query: 267 KE 268 E Sbjct: 132 YE 133 >gi|206972250|ref|ZP_03233197.1| ybxB protein [Bacillus cereus AH1134] gi|228950649|ref|ZP_04112783.1| hypothetical protein bthur0006_890 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229077398|ref|ZP_04210055.1| hypothetical protein bcere0023_1120 [Bacillus cereus Rock4-2] gi|206732824|gb|EDZ49999.1| ybxB protein [Bacillus cereus AH1134] gi|228705911|gb|EEL58240.1| hypothetical protein bcere0023_1120 [Bacillus cereus Rock4-2] gi|228809000|gb|EEM55485.1| hypothetical protein bthur0006_890 [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 199 Score = 38.9 bits (89), Expect = 1.4, Method: Compositional matrix adjust. Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 209 IQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265 I+GD+L++ CG G L LA+ F V V++ + ++ A+ N A N + N++I + S Sbjct: 58 IKGDILDVGCGYGPIGLSLAKEFQGREVHMVDVNERALGLAKENAANNKIENIRIFQSS 116 >gi|21220225|ref|NP_626004.1| hypothetical protein SCO1731 [Streptomyces coelicolor A3(2)] gi|256788661|ref|ZP_05527092.1| hypothetical protein SlivT_29592 [Streptomyces lividans TK24] gi|289772556|ref|ZP_06531934.1| conserved hypothetical protein [Streptomyces lividans TK24] gi|5531441|emb|CAB50946.1| conserved hypothetical protein [Streptomyces coelicolor A3(2)] gi|289702755|gb|EFD70184.1| conserved hypothetical protein [Streptomyces lividans TK24] Length = 205 Score = 38.9 bits (89), Expect = 1.4, Method: Compositional matrix adjust. Identities = 18/43 (41%), Positives = 26/43 (60%) Query: 211 GDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAA 253 GD+L+L CG G+ SL+ A RV V+++ VE AR +A Sbjct: 52 GDVLDLGCGTGSLSLLAAEQGHRVTGVDLSPAMVELARTKLAG 94 >gi|326937895|gb|AEA13791.1| 16S rRNA m(2)G 1207 methyltransferase [Bacillus thuringiensis serovar chinensis CT-43] Length = 199 Score = 38.9 bits (89), Expect = 1.4, Method: Compositional matrix adjust. Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 209 IQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265 I+GD+L++ CG G L LA+ F V V++ + ++ A+ N A N + N++I + S Sbjct: 58 IKGDILDVGCGYGPIGLSLAKEFQGCEVHMVDVNERALGLAKENAANNRIENIRIFQSS 116 >gi|229015503|ref|ZP_04172501.1| hypothetical protein bcere0030_990 [Bacillus cereus AH1273] gi|229021712|ref|ZP_04178294.1| hypothetical protein bcere0029_910 [Bacillus cereus AH1272] gi|228739580|gb|EEL89994.1| hypothetical protein bcere0029_910 [Bacillus cereus AH1272] gi|228745790|gb|EEL95794.1| hypothetical protein bcere0030_990 [Bacillus cereus AH1273] Length = 213 Score = 38.9 bits (89), Expect = 1.4, Method: Compositional matrix adjust. Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 209 IQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265 I+GD+L++ CG G L LA+ F V V++ + ++ A+ N A N + N++I + S Sbjct: 72 IKGDILDVGCGYGPIGLSLAKEFQGREVHMVDVNERALGLAKENAANNRIENIRIFQSS 130 >gi|315579656|gb|EFU91847.1| conserved domain protein [Enterococcus faecalis TX0630] Length = 47 Score = 38.9 bits (89), Expect = 1.5, Method: Composition-based stats. Identities = 20/47 (42%), Positives = 26/47 (55%) Query: 319 LYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 +YISCN +L RDL L+ + ++ L D FP T E V L RK Sbjct: 1 MYISCNVSTLARDLVQLAKVYQVDYLQSVDMFPQTARCEVVVKLTRK 47 >gi|224543595|ref|ZP_03684134.1| hypothetical protein CATMIT_02804 [Catenibacterium mitsuokai DSM 15897] gi|224523467|gb|EEF92572.1| hypothetical protein CATMIT_02804 [Catenibacterium mitsuokai DSM 15897] Length = 397 Score = 38.9 bits (89), Expect = 1.5, Method: Compositional matrix adjust. Identities = 37/156 (23%), Positives = 69/156 (44%), Gaps = 18/156 (11%) Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271 D+L + CG+G L L ++V+A++ K S+ A N K + + +K F Sbjct: 258 DVLSMGCGSGIMELQLE---NKVVAIDDNKVSIHDA--------TENAKRLELDNKLFIA 306 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLC 329 ++ + LK+ HSY + ++ G+ D + + H++ +S N +L Sbjct: 307 GHVNDQAAHHLKN---HSY--DALIINETVDGMTDDLLKSITLSGIKHVIIVSDNMSTLA 361 Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 + L L + + D+ P+T +E V L RK Sbjct: 362 KTLHQLEEMFDVNTIISLDKEPHTPRLEIIVDLKRK 397 >gi|228898854|ref|ZP_04063136.1| hypothetical protein bthur0014_880 [Bacillus thuringiensis IBL 4222] gi|228860754|gb|EEN05132.1| hypothetical protein bthur0014_880 [Bacillus thuringiensis IBL 4222] Length = 199 Score = 38.9 bits (89), Expect = 1.5, Method: Compositional matrix adjust. Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 209 IQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265 I+GD+L++ CG G L LA+ F V V++ + ++ A+ N A N + N++I + S Sbjct: 58 IKGDILDVGCGYGPIGLSLAKEFQGREVHMVDVNERALGLAKENAANNKIENIRIFQSS 116 >gi|283782504|ref|YP_003373259.1| cyclopropane-fatty-acyl-phospholipid synthase [Pirellula staleyi DSM 6068] gi|283440957|gb|ADB19399.1| Cyclopropane-fatty-acyl-phospholipid synthase [Pirellula staleyi DSM 6068] Length = 345 Score = 38.5 bits (88), Expect = 1.5, Method: Compositional matrix adjust. Identities = 28/108 (25%), Positives = 53/108 (49%), Gaps = 7/108 (6%) Query: 213 LLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270 +LEL CG G+ SL +A HF ++ AV ++P E + N++I+ ++F+ Sbjct: 122 ILELGCGWGSLSLWMAEHFPTSQITAVSNSRPQREYIEAQARERGLTNLRIITADMRDFS 181 Query: 271 QAMRREREFNRLKDIDIHSY-RFKTIFVDPPRSGLDDATVGMVQAYPH 317 A +F+R+ +++ + R I ++ RS + D V + H Sbjct: 182 IA----EKFDRVVSVEMLEHMRNYAIVLERIRSWMHDDAKLFVHIFTH 225 >gi|156972629|ref|YP_001443536.1| N6-adenine-specific methylase [Vibrio harveyi ATCC BAA-1116] gi|156524223|gb|ABU69309.1| hypothetical protein VIBHAR_00281 [Vibrio harveyi ATCC BAA-1116] Length = 199 Score = 38.5 bits (88), Expect = 1.5, Method: Compositional matrix adjust. Identities = 26/106 (24%), Positives = 48/106 (45%), Gaps = 17/106 (16%) Query: 210 QGDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268 Q L+L+ G+G A R D+V +E+ + + + ++A+ + NN+++V + Sbjct: 60 QAKCLDLFAGSGGLGFESASRQADQVTMIELNPQAFQQLQKSVASLNANNIQVVNTDAIS 119 Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGMVQ 313 F Q +F+DPP R GL D TV +++ Sbjct: 120 FLQQ---------------PGTPHHVVFIDPPFRKGLLDETVTLLE 150 >gi|238761635|ref|ZP_04622610.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Yersinia kristensenii ATCC 33638] gi|238700149|gb|EEP92891.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Yersinia kristensenii ATCC 33638] Length = 56 Score = 38.5 bits (88), Expect = 1.6, Method: Compositional matrix adjust. Identities = 16/51 (31%), Positives = 33/51 (64%), Gaps = 1/51 (1%) Query: 318 ILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRKPS 367 ++YISC+ +L R+ +L + + + ++ + D FP+T H+E LL+++P Sbjct: 3 VVYISCHSTTLARNNQVLLAAGYRLAQVRMLDMFPHTGHLESMALLMQEPG 53 >gi|145344558|ref|XP_001416797.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144577023|gb|ABO95090.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 441 Score = 38.5 bits (88), Expect = 1.6, Method: Compositional matrix adjust. Identities = 30/93 (32%), Positives = 38/93 (40%), Gaps = 16/93 (17%) Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDA-------TVGMVQAYPHILYISCNPDSLCRDLSIL 335 KD D+ + VDPPR GLD G+ +LY+SC +S RD L Sbjct: 355 KDCDV-------LIVDPPRKGLDAKLRAVLTDVDGLSDDLQTLLYVSCGFESFMRDSDEL 407 Query: 336 --STTHTIERLALFDQFPYTRHMECGVLLVRKP 366 S I F FP T H+E + R P Sbjct: 408 LASGVWQIRHHESFVFFPGTNHIEIFAVFSRTP 440 >gi|15605998|ref|NP_213375.1| hypothetical protein aq_533 [Aquifex aeolicus VF5] gi|2983178|gb|AAC06779.1| hypothetical protein aq_533 [Aquifex aeolicus VF5] Length = 380 Score = 38.5 bits (88), Expect = 1.6, Method: Compositional matrix adjust. Identities = 24/68 (35%), Positives = 38/68 (55%), Gaps = 2/68 (2%) Query: 210 QGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268 +GD +L+L+C +G FS+ A +V+ V+I K +VE AR N N V V ++ + Sbjct: 210 EGDRVLDLFCYSGGFSVYCANRGAKVVGVDINKRAVELARENAKLNSV-KADFVLGNAFD 268 Query: 269 FTQAMRRE 276 F Q + E Sbjct: 269 FIQESKEE 276 >gi|317132483|ref|YP_004091797.1| methyltransferase small [Ethanoligenens harbinense YUAN-3] gi|315470462|gb|ADU27066.1| methyltransferase small [Ethanoligenens harbinense YUAN-3] Length = 398 Score = 38.5 bits (88), Expect = 1.7, Method: Compositional matrix adjust. Identities = 29/107 (27%), Positives = 47/107 (43%), Gaps = 18/107 (16%) Query: 210 QGDLLELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268 G +L+ +C G F+L AR+ D V AV+I+ ++E R N A N + N+ + Sbjct: 225 SGAVLDCFCHTGGFALHAARYGADTVEAVDISSAALEMVRRNAALNGLANITTTEANV-- 282 Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-----RSGLDDATVG 310 F+ LK ++ + +DPP +S L A G Sbjct: 283 ----------FDLLKAYQQEGRQYDLVILDPPAFAKSKSALQSAARG 319 >gi|254423085|ref|ZP_05036803.1| Nodulation protein S [Synechococcus sp. PCC 7335] gi|196190574|gb|EDX85538.1| Nodulation protein S [Synechococcus sp. PCC 7335] Length = 229 Score = 38.5 bits (88), Expect = 1.7, Method: Compositional matrix adjust. Identities = 21/89 (23%), Positives = 51/89 (57%), Gaps = 7/89 (7%) Query: 200 EWVLAATKG-IQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN 258 +W+ + + ++G LE+ CG GNF++++A+H +LA+++ + R + A+ Sbjct: 20 QWIFSQLQPHVKGRTLEVGCGCGNFTMLIAQHCSELLAIDLDEGYTRQTRSRLQAH---- 75 Query: 259 VKIVRMSSKEFTQAMRREREFNRLKDIDI 287 V++++ + T AM ++ F+ + +D+ Sbjct: 76 -PHVQVAAADVT-AMAPDQSFDTIIMLDV 102 >gi|297582440|ref|YP_003698220.1| methyltransferase small [Bacillus selenitireducens MLS10] gi|297140897|gb|ADH97654.1| methyltransferase small [Bacillus selenitireducens MLS10] Length = 201 Score = 38.5 bits (88), Expect = 1.8, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 36/62 (58%), Gaps = 3/62 (4%) Query: 210 QGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHV-NNVKIVRMSS 266 +GDLL++ CG G + LA D R+ +++ + SVE AR N AN V +NV I + + Sbjct: 59 EGDLLDIGCGWGPIGIALAMSTDQRRINMIDVNERSVELARLNAEANGVADNVHIEQRDA 118 Query: 267 KE 268 E Sbjct: 119 TE 120 >gi|328772089|gb|EGF82128.1| hypothetical protein BATDEDRAFT_23450 [Batrachochytrium dendrobatidis JAM81] Length = 623 Score = 38.5 bits (88), Expect = 1.8, Method: Compositional matrix adjust. Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 12/110 (10%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L++ YC +G F L+LA F+ V+A+E + A N A N +NN + S +E+ Sbjct: 424 LVDAYCRSGVFGLLLAPLFEHVVAIEAHTSLSKCAFSNAADNQINNYTLHNGSVEEWFST 483 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD-DATVGMVQAYPHILYI 321 + + + +F P GL DA ++Q P ++ + Sbjct: 484 LSNQPNL-----------QVSMVFCHSPVQGLSVDALDRLLQFGPRMIVL 522 >gi|148265427|ref|YP_001232133.1| methyltransferase type 11 [Geobacter uraniireducens Rf4] gi|146398927|gb|ABQ27560.1| Methyltransferase type 11 [Geobacter uraniireducens Rf4] Length = 226 Score = 38.5 bits (88), Expect = 1.8, Method: Compositional matrix adjust. Identities = 17/46 (36%), Positives = 29/46 (63%) Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVN 257 ++LE+ CG G + LA+H +RV+A + ++E AR I A++V Sbjct: 23 EVLEIGCGKGRITQDLAKHAERVVATDPDAAALETARATIVADNVT 68 >gi|229159274|ref|ZP_04287298.1| hypothetical protein bcere0009_870 [Bacillus cereus R309803] gi|228624166|gb|EEK80968.1| hypothetical protein bcere0009_870 [Bacillus cereus R309803] Length = 158 Score = 38.5 bits (88), Expect = 1.9, Method: Compositional matrix adjust. Identities = 27/100 (27%), Positives = 46/100 (46%), Gaps = 21/100 (21%) Query: 209 IQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266 I+GD+L++ CG G L LA+ F V V++ + ++ A+ N A N + N++I + S Sbjct: 17 IKGDILDVGCGYGPIGLSLAKEFQGCNVHMVDVNERALGLAKENAANNRIENIRIFQSSV 76 Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLD 305 E ++ I +PP R+G D Sbjct: 77 YENVDG------------------KYAAILSNPPIRAGKD 98 >gi|307595644|ref|YP_003901961.1| methyltransferase [Vulcanisaeta distributa DSM 14429] gi|307550845|gb|ADN50910.1| methyltransferase small [Vulcanisaeta distributa DSM 14429] Length = 198 Score = 38.5 bits (88), Expect = 1.9, Method: Compositional matrix adjust. Identities = 30/99 (30%), Positives = 47/99 (47%), Gaps = 24/99 (24%) Query: 212 DLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269 D+L++ CG G +V A+ RV+ V+I K +V+ A NI N V+N ++ Sbjct: 59 DILDMGCGYGVLGIVAAKLAPRGRVVMVDINKLAVKLAAINIKINRVSNAEV-------- 110 Query: 270 TQAMRREREFNRLKDI--DIHSYRFKTIFVDPP-RSGLD 305 RL D+ + +F TI +PP +GLD Sbjct: 111 -----------RLSDLYNAVQGEKFNTIISNPPITAGLD 138 >gi|229918535|ref|YP_002887181.1| methyltransferase [Exiguobacterium sp. AT1b] gi|229469964|gb|ACQ71736.1| methyltransferase [Exiguobacterium sp. AT1b] Length = 187 Score = 38.1 bits (87), Expect = 2.0, Method: Compositional matrix adjust. Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 14/92 (15%) Query: 211 GDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVN-NVKIVRMSSKE 268 G L+LY G+G + L+R D + V+ +V+ + N+ A H K+ R +K Sbjct: 43 GKALDLYAGSGGLGIEALSRGCDEAIFVDRQPKAVQTIQENLRATHYEVKGKVYRQDAKA 102 Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300 + ++ ++E +FK IF+DPP Sbjct: 103 VLEQLKVQQE------------QFKLIFMDPP 122 >gi|332665334|ref|YP_004448122.1| oxidoreductase [Haliscomenobacter hydrossis DSM 1100] gi|332334148|gb|AEE51249.1| oxidoreductase [Haliscomenobacter hydrossis DSM 1100] Length = 296 Score = 38.1 bits (87), Expect = 2.2, Method: Compositional matrix adjust. Identities = 37/147 (25%), Positives = 68/147 (46%), Gaps = 29/147 (19%) Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293 V+ V+ KP V AR N+ A+ ++N +R + ++ + +R+E + R +++ Sbjct: 153 VVHVDSVKPVVSWARQNMEASQLDN---IRWTVEDALKFVRKEAKRGR---------KYQ 200 Query: 294 TIFVDPPRSG---------LDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHT---I 341 I +DPP G LD +++ IL +P+ L++ S + Sbjct: 201 AIILDPPAYGRGPEGEKWLLDKHLPELLEHCGQIL----DPEHHLLILNLYSMGFSALIA 256 Query: 342 ERLALFDQFPYTRHMECGVLLVRKPSG 368 E LA FP+ ++MECG L + +G Sbjct: 257 ENLAR-QYFPFAKNMECGELFIPDQAG 282 >gi|239940188|ref|ZP_04692125.1| hypothetical protein SrosN15_04265 [Streptomyces roseosporus NRRL 15998] Length = 505 Score = 38.1 bits (87), Expect = 2.2, Method: Compositional matrix adjust. Identities = 19/48 (39%), Positives = 27/48 (56%) Query: 207 KGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAAN 254 G +GD+L+L CG G+ SL+ A RV AV+ + E AR +A Sbjct: 47 PGTRGDVLDLGCGTGSLSLLAAGQGHRVTAVDRSPRMAEKARAKLAGT 94 >gi|302868446|ref|YP_003837083.1| methyltransferase [Micromonospora aurantiaca ATCC 27029] gi|302571305|gb|ADL47507.1| Methyltransferase type 11 [Micromonospora aurantiaca ATCC 27029] Length = 250 Score = 38.1 bits (87), Expect = 2.3, Method: Compositional matrix adjust. Identities = 20/46 (43%), Positives = 27/46 (58%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN 258 LL++ CG G AR FDRV +E++ VEAAR NI V++ Sbjct: 51 LLDVACGTGAHLRAFARLFDRVEGLELSPAMVEAARTNIPGAVVHH 96 >gi|311977791|ref|YP_003986911.1| putative RNA methyltransferase [Acanthamoeba polyphaga mimivirus] gi|82000201|sp|Q5UQK1|YR407_MIMIV RecName: Full=Putative RNA methyltransferase R407 gi|55417026|gb|AAV50676.1| tRNA (uracil-5-)-methyltransferase [Acanthamoeba polyphaga mimivirus] gi|308204810|gb|ADO18611.1| putative RNA methyltransferase [Acanthamoeba polyphaga mimivirus] Length = 356 Score = 38.1 bits (87), Expect = 2.3, Method: Compositional matrix adjust. Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 5/73 (6%) Query: 295 IFVDPPRSGLDDATVGMVQAYPHIL----YISCNPDSLCRDLSILSTTHTIERLALFDQF 350 + V P R+GL + + ++ I+ Y+SC SL RDL + H IE+ D F Sbjct: 284 LIVSPGRNGLKNNVIQAIKQSRSIIKEFYYVSCYSKSLIRDLKNIENCH-IEKAQAIDLF 342 Query: 351 PYTRHMECGVLLV 363 P T E V +V Sbjct: 343 PSTEFCETIVKIV 355 >gi|33863408|ref|NP_894968.1| SAM-binding motif-containing protein [Prochlorococcus marinus str. MIT 9313] gi|33640857|emb|CAE21312.1| SAM (and some other nucleotide) binding motif [Prochlorococcus marinus str. MIT 9313] Length = 255 Score = 38.1 bits (87), Expect = 2.3, Method: Compositional matrix adjust. Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 7/80 (8%) Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEI 239 + + S+ Q + W+ + Q ++ CG+G SL LARHFDRV A ++ Sbjct: 12 FDSVAESYAQQRPYYPESLFTWISSKAASHQ-RCWDVACGSGQASLGLARHFDRVDASDL 70 Query: 240 AKPSVEAA------RYNIAA 253 + V AA Y +AA Sbjct: 71 SPAQVAAAPAHSNIHYQVAA 90 >gi|293391857|ref|ZP_06636191.1| 23S rRNA methyluridine methyltransferase [Aggregatibacter actinomycetemcomitans D7S-1] gi|290952391|gb|EFE02510.1| 23S rRNA methyluridine methyltransferase [Aggregatibacter actinomycetemcomitans D7S-1] Length = 53 Score = 38.1 bits (87), Expect = 2.4, Method: Composition-based stats. Identities = 20/45 (44%), Positives = 29/45 (64%), Gaps = 1/45 (2%) Query: 318 ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362 ILY SCN +++ +DL L T + +++ LFD P+T H E VLL Sbjct: 6 ILYSSCNAETMGKDLQSL-THYQSKKIQLFDMIPHTAHYEVLVLL 49 >gi|134100186|ref|YP_001105847.1| hypothetical protein SACE_3648 [Saccharopolyspora erythraea NRRL 2338] gi|291006595|ref|ZP_06564568.1| hypothetical protein SeryN2_18911 [Saccharopolyspora erythraea NRRL 2338] gi|133912809|emb|CAM02922.1| hypothetical protein SACE_3648 [Saccharopolyspora erythraea NRRL 2338] Length = 221 Score = 38.1 bits (87), Expect = 2.5, Method: Compositional matrix adjust. Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 2/68 (2%) Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAAN 254 N H W+L L++ CG+G+ + +LAR D VLAV+ VE AR ++ Sbjct: 19 NAHYHAWILRQLPARFSRALDVGCGSGDLARLLARRADEVLAVDQDPSIVEHARS--LSS 76 Query: 255 HVNNVKIV 262 H N+ +V Sbjct: 77 HRTNIDVV 84 >gi|255578870|ref|XP_002530289.1| RNA m5u methyltransferase, putative [Ricinus communis] gi|223530187|gb|EEF32096.1| RNA m5u methyltransferase, putative [Ricinus communis] Length = 863 Score = 37.7 bits (86), Expect = 2.6, Method: Compositional matrix adjust. Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 5/51 (9%) Query: 283 KDIDIHSYRFKTI--FVDPPRSGLDDATVGMVQAYPH---ILYISCNPDSL 328 KD +FK + VDPPR+GL + ++ + H ++YISCNP++L Sbjct: 741 KDGTYSVPQFKNVVAIVDPPRNGLHPTVIKALRTHSHLRRLVYISCNPETL 791 >gi|331701219|ref|YP_004398178.1| protein-(glutamine-N5) methyltransferase [Lactobacillus buchneri NRRL B-30929] gi|329128562|gb|AEB73115.1| protein-(glutamine-N5) methyltransferase, release factor-specific [Lactobacillus buchneri NRRL B-30929] Length = 282 Score = 37.7 bits (86), Expect = 2.7, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 2/60 (3%) Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVL--ARHFDRVLAVEIAKPSVEAARYNIAANH 255 +++W+LA + +L++ G+G ++ L AR +V A +I+ P+++ AR N ANH Sbjct: 105 LVDWILADNSDSKLKVLDIGTGSGAIAIALKHARPHWQVFASDISLPAIKVARQNAIANH 164 >gi|306828583|ref|ZP_07461777.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus mitis ATCC 6249] gi|304429191|gb|EFM32277.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus mitis ATCC 6249] Length = 68 Score = 37.7 bits (86), Expect = 2.7, Method: Composition-based stats. Identities = 18/48 (37%), Positives = 28/48 (58%) Query: 318 ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 ++Y+SCN +L RDL L + ++ + D FP+T E V LV+K Sbjct: 12 MVYVSCNVSTLARDLVKLVKVYDLQYIQSVDMFPHTARTEAVVKLVKK 59 >gi|84496605|ref|ZP_00995459.1| methylase involved in ubiquinone/menaquinonebiosynthesis-like protein [Janibacter sp. HTCC2649] gi|84383373|gb|EAP99254.1| methylase involved in ubiquinone/menaquinonebiosynthesis-like protein [Janibacter sp. HTCC2649] Length = 245 Score = 37.7 bits (86), Expect = 2.7, Method: Compositional matrix adjust. Identities = 18/39 (46%), Positives = 22/39 (56%) Query: 210 QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248 G L+ CG G + LA HFDRV V+IA +E AR Sbjct: 63 HGRALDFGCGAGRLTRALAAHFDRVDGVDIAASMIELAR 101 >gi|331265452|ref|YP_004325082.1| putative RNA methyltransferase [Streptococcus oralis Uo5] gi|326682124|emb|CBY99740.1| putative RNA methyltransferase [Streptococcus oralis Uo5] Length = 51 Score = 37.7 bits (86), Expect = 2.8, Method: Composition-based stats. Identities = 18/48 (37%), Positives = 28/48 (58%) Query: 318 ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 ++Y+SCN +L RDL L + ++ + D FP+T E V LV+K Sbjct: 1 MVYVSCNVSTLARDLVKLVKVYDLQYIQSVDMFPHTARTEAVVKLVKK 48 >gi|293364529|ref|ZP_06611254.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus oralis ATCC 35037] gi|307702819|ref|ZP_07639769.1| hypothetical protein SMSK23_0772 [Streptococcus oralis ATCC 35037] gi|291317037|gb|EFE57465.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus oralis ATCC 35037] gi|307623675|gb|EFO02662.1| hypothetical protein SMSK23_0772 [Streptococcus oralis ATCC 35037] Length = 62 Score = 37.7 bits (86), Expect = 2.8, Method: Composition-based stats. Identities = 18/48 (37%), Positives = 28/48 (58%) Query: 318 ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 ++Y+SCN +L RDL L + ++ + D FP+T E V LV+K Sbjct: 12 MVYVSCNVSTLARDLVKLVKVYDLQYIQSVDMFPHTARTEAVVKLVKK 59 >gi|320335602|ref|YP_004172313.1| SAM-dependent methyltransferase [Deinococcus maricopensis DSM 21211] gi|319756891|gb|ADV68648.1| SAM-dependent methyltransferase [Deinococcus maricopensis DSM 21211] Length = 391 Score = 37.7 bits (86), Expect = 2.9, Method: Compositional matrix adjust. Identities = 26/91 (28%), Positives = 45/91 (49%), Gaps = 12/91 (13%) Query: 210 QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269 +G L+++ +G+F L LA V ++ + ++ A N+ N NV + Sbjct: 218 RGAALDVFSYHGSFGLHLAPGAAHVELIDASGAALARAEENMRLNGHTNVT--------Y 269 Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300 T+A F+RL+D++ RF TI +DPP Sbjct: 270 TEA----NAFDRLRDLESAGQRFDTISLDPP 296 >gi|167823860|ref|ZP_02455331.1| 23S rRNA 5-methyluridine methyltransferase [Burkholderia pseudomallei 9] Length = 342 Score = 37.7 bits (86), Expect = 2.9, Method: Compositional matrix adjust. Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 1/73 (1%) Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 FTQ N IN ++ L +GD +L+L+CG GNF+L LAR V+ +E + Sbjct: 256 FTQVNHQINRVLVGRALRLLAPERGDRVLDLFCGIGNFTLPLARLAREVVGIEGSDALTA 315 Query: 246 AARYNIAANHVNN 258 A N N V+ Sbjct: 316 RALENAKENGVDG 328 >gi|291612617|ref|YP_003522774.1| hypothetical protein Slit_0145 [Sideroxydans lithotrophicus ES-1] gi|291582729|gb|ADE10387.1| protein of unknown function Met10 [Sideroxydans lithotrophicus ES-1] Length = 447 Score = 37.7 bits (86), Expect = 2.9, Method: Compositional matrix adjust. Identities = 27/101 (26%), Positives = 49/101 (48%), Gaps = 11/101 (10%) Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDR-VLAVEIAKPSVEAARYNIAANHVNNVK 260 L T D+L +C G FSL R + VL+++ ++ +++ A+ N+ N ++ K Sbjct: 263 ALTGTLAAGRDVLNCFCYTGGFSLYALRGGAKSVLSIDSSQEALQLAQTNVQLNALDAAK 322 Query: 261 IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301 + F A+R+ R+ NR +F I +DPP+ Sbjct: 323 AEWQCADVF-DALRKLRDQNR---------KFDLIVLDPPK 353 >gi|55981249|ref|YP_144546.1| hypothetical protein TTHA1280 [Thermus thermophilus HB8] gi|82408293|pdb|2CWW|A Chain A, Crystal Structure Of Thermus Thermophilus Ttha1280, A Putative Sam-Dependent Rna Methyltransferase, In Complex With S-Adenosyl-L-Homocysteine gi|82408294|pdb|2CWW|B Chain B, Crystal Structure Of Thermus Thermophilus Ttha1280, A Putative Sam-Dependent Rna Methyltransferase, In Complex With S-Adenosyl-L-Homocysteine gi|55772662|dbj|BAD71103.1| conserved hypothetical protein [Thermus thermophilus HB8] Length = 382 Score = 37.7 bits (86), Expect = 2.9, Method: Compositional matrix adjust. Identities = 28/125 (22%), Positives = 56/125 (44%), Gaps = 14/125 (11%) Query: 214 LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273 L+++ G F+L LA F V+AV+ + ++ A N N + NV+++ ++ Sbjct: 214 LDVFSYAGGFALHLALGFREVVAVDSSAEALRRAEENARLNGLGNVRVLEANA------- 266 Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLS 333 F+ L+ ++ RF + +DPP + +AY ++ L ++ Sbjct: 267 -----FDLLRRLEKEGERFDLVVLDPP--AFAKGKKDVERAYRAYKEVNLRAIKLLKEGG 319 Query: 334 ILSTT 338 IL+T Sbjct: 320 ILATA 324 >gi|297559246|ref|YP_003678220.1| methyltransferase type 11 [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296843694|gb|ADH65714.1| Methyltransferase type 11 [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 257 Score = 37.7 bits (86), Expect = 3.0, Method: Compositional matrix adjust. Identities = 17/38 (44%), Positives = 23/38 (60%) Query: 211 GDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248 G +L+ CG G S LA HF V+ V+I+ P +E AR Sbjct: 76 GRVLDFGCGAGRLSNALAAHFPEVVGVDISAPMLEEAR 113 >gi|187734788|ref|YP_001876900.1| tRNA (guanine-N(7)-)-methyltransferase [Akkermansia muciniphila ATCC BAA-835] gi|187424840|gb|ACD04119.1| tRNA (guanine-N(7)-)-methyltransferase [Akkermansia muciniphila ATCC BAA-835] Length = 198 Score = 37.7 bits (86), Expect = 3.0, Method: Compositional matrix adjust. Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 5/86 (5%) Query: 202 VLAATK--GIQGDL-LELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHV 256 VLA + G G ++L CG+G F L +A H+ R L +E V A + Sbjct: 14 VLAPSDIFGADGPFEVDLGCGDGGFLLQMAAHYPERRFLGIERLLGRVRGVCSRAAVRGL 73 Query: 257 NNVKIVRMSSKEFTQAMRREREFNRL 282 +NVK+ R+ S+ F + M + +RL Sbjct: 74 DNVKVFRVESRYFLEWMMQPGCISRL 99 >gi|46199218|ref|YP_004885.1| hypothetical protein TTC0914 [Thermus thermophilus HB27] gi|46196843|gb|AAS81258.1| conserved hypothetical protein [Thermus thermophilus HB27] Length = 382 Score = 37.7 bits (86), Expect = 3.0, Method: Compositional matrix adjust. Identities = 28/125 (22%), Positives = 56/125 (44%), Gaps = 14/125 (11%) Query: 214 LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273 L+++ G F+L LA F V+AV+ + ++ A N N + NV+++ ++ Sbjct: 214 LDVFSYAGGFALHLALGFREVVAVDSSAEALRRAEENARLNGLGNVRVLEANA------- 266 Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLS 333 F+ L+ ++ RF + +DPP + +AY ++ L ++ Sbjct: 267 -----FDLLRRLEKEGERFDLVVLDPP--AFAKGKKDVERAYRAYKEVNLRAIKLLKEGG 319 Query: 334 ILSTT 338 IL+T Sbjct: 320 ILATA 324 >gi|75910914|ref|YP_325210.1| hypothetical protein Ava_4718 [Anabaena variabilis ATCC 29413] gi|75704639|gb|ABA24315.1| conserved hypothetical protein [Anabaena variabilis ATCC 29413] Length = 244 Score = 37.7 bits (86), Expect = 3.0, Method: Compositional matrix adjust. Identities = 17/43 (39%), Positives = 30/43 (69%), Gaps = 1/43 (2%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE-AARYNIAAN 254 L++ CGNG + L++ F RV+ ++++K ++E AA+ N AAN Sbjct: 59 LIDFACGNGTQTKFLSQFFPRVIGLDVSKSALEIAAKENTAAN 101 >gi|315648197|ref|ZP_07901298.1| methyltransferase [Paenibacillus vortex V453] gi|315276843|gb|EFU40186.1| methyltransferase [Paenibacillus vortex V453] Length = 205 Score = 37.7 bits (86), Expect = 3.1, Method: Compositional matrix adjust. Identities = 22/91 (24%), Positives = 43/91 (47%), Gaps = 12/91 (13%) Query: 211 GDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269 G L+L+ G G + L+R DR + +++ S+ + +N+K R+ + Sbjct: 47 GTALDLFAGTGGLGIEALSRGIDRAVFIDVEPKSISTIK--------DNLKAARLEER-- 96 Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300 + R LK ++ S++F +F+DPP Sbjct: 97 -AEIYRNDAARALKALEKRSFKFDLVFLDPP 126 >gi|256376931|ref|YP_003100591.1| methyltransferase type 12 [Actinosynnema mirum DSM 43827] gi|255921234|gb|ACU36745.1| Methyltransferase type 12 [Actinosynnema mirum DSM 43827] Length = 232 Score = 37.7 bits (86), Expect = 3.1, Method: Compositional matrix adjust. Identities = 20/48 (41%), Positives = 26/48 (54%) Query: 201 WVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248 WV A G L+ CG+G LA H+D VL V+++ P VE AR Sbjct: 36 WVTDAGVRPGGRALDAGCGSGRRCRELADHYDEVLGVDLSAPLVELAR 83 >gi|73535497|pdb|1WXW|A Chain A, Crystal Structure Of Tt1595, A Putative Sam-Dependent Methyltransferase From Thermus Thermophillus Hb8 gi|73535498|pdb|1WXW|B Chain B, Crystal Structure Of Tt1595, A Putative Sam-Dependent Methyltransferase From Thermus Thermophillus Hb8 gi|73535499|pdb|1WXW|C Chain C, Crystal Structure Of Tt1595, A Putative Sam-Dependent Methyltransferase From Thermus Thermophillus Hb8 gi|73535500|pdb|1WXW|D Chain D, Crystal Structure Of Tt1595, A Putative Sam-Dependent Methyltransferase From Thermus Thermophillus Hb8 gi|73535501|pdb|1WXX|A Chain A, Crystal Structure Of Tt1595, A Putative Sam-Dependent Methyltransferase From Thermus Thermophillus Hb8 gi|73535502|pdb|1WXX|B Chain B, Crystal Structure Of Tt1595, A Putative Sam-Dependent Methyltransferase From Thermus Thermophillus Hb8 gi|73535503|pdb|1WXX|C Chain C, Crystal Structure Of Tt1595, A Putative Sam-Dependent Methyltransferase From Thermus Thermophillus Hb8 gi|73535504|pdb|1WXX|D Chain D, Crystal Structure Of Tt1595, A Putative Sam-Dependent Methyltransferase From Thermus Thermophillus Hb8 Length = 382 Score = 37.7 bits (86), Expect = 3.2, Method: Compositional matrix adjust. Identities = 28/125 (22%), Positives = 56/125 (44%), Gaps = 14/125 (11%) Query: 214 LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273 L+++ G F+L LA F V+AV+ + ++ A N N + NV+++ ++ Sbjct: 214 LDVFSYAGGFALHLALGFREVVAVDSSAEALRRAEENARLNGLGNVRVLEANA------- 266 Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLS 333 F+ L+ ++ RF + +DPP + +AY ++ L ++ Sbjct: 267 -----FDLLRRLEKEGERFDLVVLDPP--AFAKGKKDVERAYRAYKEVNLRAIKLLKEGG 319 Query: 334 ILSTT 338 IL+T Sbjct: 320 ILATA 324 >gi|226192738|pdb|3GGD|A Chain A, Crystal Structure Of Sam-Dependent Methyltransferase (Yp_325210.1) From Anabaena Variabilis Atcc 29413 At 2.11 A Resolution Length = 245 Score = 37.7 bits (86), Expect = 3.3, Method: Compositional matrix adjust. Identities = 17/43 (39%), Positives = 30/43 (69%), Gaps = 1/43 (2%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE-AARYNIAAN 254 L++ CGNG + L++ F RV+ ++++K ++E AA+ N AAN Sbjct: 60 LIDFACGNGTQTKFLSQFFPRVIGLDVSKSALEIAAKENTAAN 102 >gi|313201123|ref|YP_004039781.1| cyclopropane-fatty-acyl-phospholipid synthase [Methylovorus sp. MP688] gi|312440439|gb|ADQ84545.1| Cyclopropane-fatty-acyl-phospholipid synthase [Methylovorus sp. MP688] Length = 348 Score = 37.7 bits (86), Expect = 3.3, Method: Compositional matrix adjust. Identities = 23/88 (26%), Positives = 44/88 (50%), Gaps = 8/88 (9%) Query: 213 LLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270 +LEL CG G+ +L +A+H+ R+ AV +K E + N++++ EF Sbjct: 124 ILELGCGWGSLTLWMAKHYPSSRITAVSNSKSQREYIMSEALKRGLPNIQVITCDMNEFN 183 Query: 271 QAMRREREFNRLKDIDI--HSYRFKTIF 296 M +F+R+ +++ H + T+F Sbjct: 184 PGM----QFDRIVSVEMFEHMRNYDTMF 207 >gi|167948631|ref|ZP_02535705.1| 23S rRNA 5-methyluridine methyltransferase [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 65 Score = 37.4 bits (85), Expect = 3.4, Method: Composition-based stats. Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 2/42 (4%) Query: 318 ILYISCNPDSLCRDLSILSTTHTIERLA--LFDQFPYTRHME 357 I+Y+SC P +L RD IL H ++ + D FP+T H+E Sbjct: 16 IVYVSCYPGTLARDAGILCHQHGYRLVSAGVMDMFPHTAHVE 57 >gi|270636082|ref|ZP_06222089.1| 23S rRNA (Uracil-5-)-methyltransferase rumA (23S rRNA(M-5-U1939)-methyltransferase) [Haemophilus influenzae HK1212] gi|270317401|gb|EFA28916.1| 23S rRNA (Uracil-5-)-methyltransferase rumA (23S rRNA(M-5-U1939)-methyltransferase) [Haemophilus influenzae HK1212] Length = 164 Score = 37.4 bits (85), Expect = 3.4, Method: Compositional matrix adjust. Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 1/71 (1%) Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 F Q N +N M+ L + Q D +L+L+CG GNF+L LA+ + +E V+ Sbjct: 94 FIQVNRALNERMVNTALDWLELNQQDCVLDLFCGMGNFTLPLAKRVKNAVGIEGVFEMVQ 153 Query: 246 AARYNIAANHV 256 A N N + Sbjct: 154 KAAQNAERNQI 164 >gi|116791377|gb|ABK25958.1| unknown [Picea sitchensis] Length = 263 Score = 37.4 bits (85), Expect = 3.6, Method: Compositional matrix adjust. Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 2/54 (3%) Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271 GNG S+ +A H+DRV+A +I+K +E AR + +V + M+ +E T Sbjct: 42 AGNGQASVSIAEHYDRVIATDISKQQLELARKHPKVTYVLTPPV--MTDEELTS 93 >gi|254473997|ref|ZP_05087390.1| methyltransferase type 11 [Pseudovibrio sp. JE062] gi|211956886|gb|EEA92093.1| methyltransferase type 11 [Pseudovibrio sp. JE062] Length = 252 Score = 37.4 bits (85), Expect = 3.9, Method: Compositional matrix adjust. Identities = 14/34 (41%), Positives = 24/34 (70%) Query: 214 LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA 247 +++ CG G FS ++ARHF +VLA +++ +E A Sbjct: 44 VDVGCGTGQFSALIARHFQQVLATDVSASQIENA 77 >gi|268316279|ref|YP_003289998.1| Methyltransferase type 11 [Rhodothermus marinus DSM 4252] gi|262333813|gb|ACY47610.1| Methyltransferase type 11 [Rhodothermus marinus DSM 4252] Length = 246 Score = 37.4 bits (85), Expect = 4.1, Method: Compositional matrix adjust. Identities = 17/57 (29%), Positives = 35/57 (61%) Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268 ++L++ CG G + VLAR RV +++A+ +++ AR A +++V+ +R +E Sbjct: 43 EILDVGCGRGRHARVLARRGYRVTGIDVAERALQIARERAEAEGLHHVRFLRHDMRE 99 >gi|302547282|ref|ZP_07299624.1| putative methyltransferase protein [Streptomyces hygroscopicus ATCC 53653] gi|302464900|gb|EFL27993.1| putative methyltransferase protein [Streptomyces himastatinicus ATCC 53653] Length = 251 Score = 37.4 bits (85), Expect = 4.1, Method: Compositional matrix adjust. Identities = 30/102 (29%), Positives = 49/102 (48%), Gaps = 4/102 (3%) Query: 154 RANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKG--IQG 211 R ++ +R+ +D+ +A + YR + +P A L +LAA G + G Sbjct: 20 RCSRPGGPEERNPMDDDALLAEQLAYYRAGAAQYDRPYA--EREELRELLAAVDGLPVAG 77 Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAA 253 D+LEL CG G ++ LA V AV+ A ++ AR A+ Sbjct: 78 DVLELACGTGQWTPRLAARARSVTAVDAAAEVLDLARARTAS 119 >gi|66547731|ref|XP_393324.2| PREDICTED: hemK methyltransferase family member 1-like isoform 1 [Apis mellifera] Length = 349 Score = 37.4 bits (85), Expect = 4.2, Method: Compositional matrix adjust. Identities = 28/115 (24%), Positives = 53/115 (46%), Gaps = 3/115 (2%) Query: 189 QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRV--LAVEIAKPSVEA 246 +P I VH + L ++ + ++LE+ CG+G SL +A V +A++ + E Sbjct: 140 RPETEILVHYILKALKSSDNNKQEILEIGCGSGAISLAIAHANKTVHCIAIDSNPEACEL 199 Query: 247 ARYN-IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300 + N N + + +V + K+ N K++D++S F I +PP Sbjct: 200 TKKNRDKLNLKDRISVVHATLKDNGSIEISNESKNESKNLDLNSKIFDFIVSNPP 254 >gi|325957208|ref|YP_004292620.1| type I restriction enzyme EcoKI subunit R [Lactobacillus acidophilus 30SC] gi|325333773|gb|ADZ07681.1| type I restriction enzyme EcoKI subunit R [Lactobacillus acidophilus 30SC] Length = 492 Score = 37.0 bits (84), Expect = 4.4, Method: Compositional matrix adjust. Identities = 31/126 (24%), Positives = 62/126 (49%), Gaps = 12/126 (9%) Query: 145 RKYQIQL-IGRANKTKICLDRDYVDERLTVAGRTLIYRQIEN--SFTQPNAGINVHMLEW 201 R+++I + + +K R +D++L AG + ++ N + TQP G N+ + EW Sbjct: 175 RRHEINIQFAKKHKLTEAETRQLIDQQLRSAGWEVDTERLNNWKNQTQPQRGHNMAIAEW 234 Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA------ARYNIAANH 255 VL Q L+ G + +V A+ +D +A ++A+P A + Y++ +N Sbjct: 235 VLP---NDQRADYALFKGLDFYGIVEAKKWDEDIAGQMAQPKEYAKEVPYQSNYHLLSNQ 291 Query: 256 VNNVKI 261 + + K+ Sbjct: 292 MGDYKV 297 >gi|298245425|ref|ZP_06969231.1| Methyltransferase type 11 [Ktedonobacter racemifer DSM 44963] gi|297552906|gb|EFH86771.1| Methyltransferase type 11 [Ktedonobacter racemifer DSM 44963] Length = 258 Score = 37.0 bits (84), Expect = 4.4, Method: Compositional matrix adjust. Identities = 19/66 (28%), Positives = 37/66 (56%), Gaps = 3/66 (4%) Query: 199 LEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV 256 L+W++ A + + G ++++ G G+ +L LA H V+A++ P +EA R H+ Sbjct: 32 LQWLVEAAR-LDGSEVVVDVATGTGHTALALAPHAREVVAIDFTAPMLEAGRKLAQERHI 90 Query: 257 NNVKIV 262 NV+ + Sbjct: 91 ANVRFI 96 >gi|322421516|ref|YP_004200739.1| polysaccharide deacetylase [Geobacter sp. M18] gi|320127903|gb|ADW15463.1| polysaccharide deacetylase [Geobacter sp. M18] Length = 496 Score = 37.0 bits (84), Expect = 4.4, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 36/60 (60%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 ++E+ G G F+L +AR+ VLAV+I+ +E R + ++N++IV+ + +E A Sbjct: 316 VMEIGAGTGIFTLDIARNCGEVLAVDISGNMLELLRKKAQSAGIDNIRIVKGNVEEMEPA 375 >gi|226323271|ref|ZP_03798789.1| hypothetical protein COPCOM_01043 [Coprococcus comes ATCC 27758] gi|225208461|gb|EEG90815.1| hypothetical protein COPCOM_01043 [Coprococcus comes ATCC 27758] Length = 310 Score = 37.0 bits (84), Expect = 4.4, Method: Compositional matrix adjust. Identities = 16/49 (32%), Positives = 27/49 (55%) Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK 260 +++ YCG G L+ + H V+ VE+ K +V+ A N N + NV+ Sbjct: 244 SVIDAYCGIGTIGLIASGHAKEVVGVELNKDAVKDAILNAKENQIRNVR 292 >gi|302549463|ref|ZP_07301805.1| methyltransferase type 12 [Streptomyces viridochromogenes DSM 40736] gi|302467081|gb|EFL30174.1| methyltransferase type 12 [Streptomyces viridochromogenes DSM 40736] Length = 218 Score = 37.0 bits (84), Expect = 4.5, Method: Compositional matrix adjust. Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 1/52 (1%) Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246 N H W+L G G L++ CG+G+ + +LA +RV V+ A P++ A Sbjct: 24 NAHFHRWILRQLPGRVGSALDVGCGSGDLARLLAHRAERVHGVD-ADPAITA 74 >gi|261408047|ref|YP_003244288.1| methyltransferase [Paenibacillus sp. Y412MC10] gi|261284510|gb|ACX66481.1| methyltransferase [Paenibacillus sp. Y412MC10] Length = 201 Score = 37.0 bits (84), Expect = 4.5, Method: Compositional matrix adjust. Identities = 30/111 (27%), Positives = 52/111 (46%), Gaps = 19/111 (17%) Query: 211 GDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269 G L+L+ G G + L+R DR + V++ S+ + +N+K R+ E Sbjct: 43 GIALDLFAGTGGLGIEALSRGMDRAVFVDVEPKSISTIK--------DNLKAARL---EE 91 Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPP---RSG----LDDATVGMVQ 313 + + R LK ++ Y F +F+DPP ++G LD A G++Q Sbjct: 92 SAEVYRNDAARALKALEKRGYGFDLVFLDPPYRFKNGDELMLDMAERGLLQ 142 >gi|229148510|ref|ZP_04276766.1| hypothetical protein bcere0011_880 [Bacillus cereus m1550] gi|228634926|gb|EEK91499.1| hypothetical protein bcere0011_880 [Bacillus cereus m1550] Length = 213 Score = 37.0 bits (84), Expect = 4.9, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 2/62 (3%) Query: 209 IQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266 I+G++L++ CG G L LA+ F V V++ + ++ A+ N A N + N++I + S Sbjct: 72 IKGNILDVGCGYGPIGLSLAKEFQGREVHMVDVNERALGLAKENAANNKIENIRIFQSSV 131 Query: 267 KE 268 E Sbjct: 132 YE 133 >gi|229125618|ref|ZP_04254650.1| hypothetical protein bcere0015_880 [Bacillus cereus BDRD-Cer4] gi|228657810|gb|EEL13616.1| hypothetical protein bcere0015_880 [Bacillus cereus BDRD-Cer4] Length = 213 Score = 37.0 bits (84), Expect = 5.0, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 2/62 (3%) Query: 209 IQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266 I+G++L++ CG G L LA+ F V V++ + ++ A+ N A N + N++I + S Sbjct: 72 IKGNILDVGCGYGPIGLSLAKEFQGREVHMVDVNERALGLAKENAANNKIKNIRIFQSSV 131 Query: 267 KE 268 E Sbjct: 132 YE 133 >gi|156741118|ref|YP_001431247.1| methyltransferase small [Roseiflexus castenholzii DSM 13941] gi|156232446|gb|ABU57229.1| methyltransferase small [Roseiflexus castenholzii DSM 13941] Length = 198 Score = 37.0 bits (84), Expect = 5.0, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 2/59 (3%) Query: 213 LLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269 +L+L CG G +VLAR F RV+ V+ +V AR+N A N NV+++ E+ Sbjct: 58 ILDLGCGCGVIGIVLARWFPQARVILVDRDLLAVRYARHNAALNQTPNVEVIGSVGFEY 116 >gi|228919051|ref|ZP_04082430.1| hypothetical protein bthur0011_870 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|229041006|ref|ZP_04189769.1| hypothetical protein bcere0027_870 [Bacillus cereus AH676] gi|228727303|gb|EEL78497.1| hypothetical protein bcere0027_870 [Bacillus cereus AH676] gi|228840576|gb|EEM85838.1| hypothetical protein bthur0011_870 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 213 Score = 37.0 bits (84), Expect = 5.1, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 2/62 (3%) Query: 209 IQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266 I+G++L++ CG G L LA+ F V V++ + ++ A+ N A N + N++I + S Sbjct: 72 IKGNILDVGCGYGPIGLSLAKEFQGREVHMVDVNERALGLAKENAANNKIENIRIFQSSV 131 Query: 267 KE 268 E Sbjct: 132 YE 133 >gi|258648575|ref|ZP_05736044.1| ribosomal protein L11 methyltransferase [Prevotella tannerae ATCC 51259] gi|260851353|gb|EEX71222.1| ribosomal protein L11 methyltransferase [Prevotella tannerae ATCC 51259] Length = 285 Score = 37.0 bits (84), Expect = 5.1, Method: Compositional matrix adjust. Identities = 16/51 (31%), Positives = 33/51 (64%), Gaps = 1/51 (1%) Query: 213 LLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262 +L++ CG G +++ A + D +A++I + V A N+A NH+NN++++ Sbjct: 151 VLDMGCGTGLLAILAAMKGADNCMAIDIDEWCVNNAMENLALNHINNIEVL 201 >gi|153006689|ref|YP_001381014.1| hypothetical protein Anae109_3851 [Anaeromyxobacter sp. Fw109-5] gi|152030262|gb|ABS28030.1| protein of unknown function Met10 [Anaeromyxobacter sp. Fw109-5] Length = 388 Score = 37.0 bits (84), Expect = 5.1, Method: Compositional matrix adjust. Identities = 44/207 (21%), Positives = 79/207 (38%), Gaps = 42/207 (20%) Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246 T G + E L A + +G L+ + G F+L LA + V AVE+ + Sbjct: 193 LTGQKTGAFLDQRENHLRAGEYARGRCLDCFAYAGGFALQLATRAEHVTAVEMQPTAAAL 252 Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR-SGLD 305 R N+ N NV++V ++ F+ L+D F + +DPP + Sbjct: 253 LRENVTLNLAANVEVVEANA------------FDYLRDRAEEEPAFDLVVLDPPAFAKSK 300 Query: 306 DATVGMVQAYPHI--------------LYISCN---PDSLCRDLSILSTTHTIERLALFD 348 DA + Y + + SC+ +++ +L + + R+ L + Sbjct: 301 DALAAARRGYKEVNLRALQVLRPGGILVTASCSYHMAEAMLEELVLDAANDAGRRVQLLE 360 Query: 349 Q------------FPYTRHMECGVLLV 363 + P TR+++C VL V Sbjct: 361 RRGAGRDHPVLLGVPETRYLKCFVLRV 387 >gi|17545416|ref|NP_518818.1| protein-L-isoaspartate O-methyltransferase [Ralstonia solanacearum GMI1000] gi|17427708|emb|CAD14227.1| probable protein-l-isoaspartate o-methyltransferase [Ralstonia solanacearum GMI1000] Length = 216 Score = 37.0 bits (84), Expect = 5.1, Method: Compositional matrix adjust. Identities = 21/52 (40%), Positives = 30/52 (57%) Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVR 263 D+LE+ G+G + +LA V V+IA V AR N+A N V NV +V+ Sbjct: 80 DVLEVGAGSGYMAALLAHRGRHVTTVDIAPELVAFARDNLARNGVTNVDVVQ 131 >gi|331236129|ref|XP_003330724.1| 3-demethylubiquinone-9 3-methyltransferase [Puccinia graminis f. sp. tritici CRL 75-36-700-3] gi|309309714|gb|EFP86305.1| 3-demethylubiquinone-9 3-methyltransferase [Puccinia graminis f. sp. tritici CRL 75-36-700-3] Length = 347 Score = 37.0 bits (84), Expect = 5.2, Method: Compositional matrix adjust. Identities = 19/46 (41%), Positives = 32/46 (69%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN 258 +L++ CG G FS VLAR +VLA++ A+ S++AAR + ++ + N Sbjct: 137 VLDVGCGGGIFSEVLARLGAQVLAIDAAEDSIKAARLHAQSDPLLN 182 >gi|228956542|ref|ZP_04118338.1| hypothetical protein bthur0005_880 [Bacillus thuringiensis serovar pakistani str. T13001] gi|228803107|gb|EEM49929.1| hypothetical protein bthur0005_880 [Bacillus thuringiensis serovar pakistani str. T13001] Length = 213 Score = 37.0 bits (84), Expect = 5.2, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 2/62 (3%) Query: 209 IQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266 I+G++L++ CG G L LA+ F V V++ + ++ A+ N A N + N++I + S Sbjct: 72 IKGNILDVGCGYGPIGLSLAKEFQGREVHMVDVNERALGLAKENAANNKIENIRIFQSSV 131 Query: 267 KE 268 E Sbjct: 132 YE 133 >gi|228905898|ref|ZP_04069795.1| hypothetical protein bthur0013_890 [Bacillus thuringiensis IBL 200] gi|228853713|gb|EEM98473.1| hypothetical protein bthur0013_890 [Bacillus thuringiensis IBL 200] Length = 213 Score = 37.0 bits (84), Expect = 5.3, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 2/62 (3%) Query: 209 IQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266 I+G++L++ CG G L LA+ F V V++ + ++ A+ N A N + N++I + S Sbjct: 72 IKGNILDVGCGYGPIGLSLAKEFQGREVHMVDVNERALGLAKENAANNKIENIRIFQSSV 131 Query: 267 KE 268 E Sbjct: 132 YE 133 >gi|218231310|ref|YP_002364950.1| ybxB protein [Bacillus cereus B4264] gi|218159267|gb|ACK59259.1| ybxB protein [Bacillus cereus B4264] Length = 199 Score = 37.0 bits (84), Expect = 5.3, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 209 IQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265 I+G++L++ CG G L LA+ F V V++ + ++ A+ N A N + N++I + S Sbjct: 58 IKGNILDVGCGYGPIGLSLAKEFQGREVHMVDVNERALGLAKENAANNKIENIRIFQSS 116 >gi|71907367|ref|YP_284954.1| hypothetical protein Daro_1737 [Dechloromonas aromatica RCB] gi|71846988|gb|AAZ46484.1| hypothetical protein Daro_1737 [Dechloromonas aromatica RCB] Length = 233 Score = 37.0 bits (84), Expect = 5.3, Method: Compositional matrix adjust. Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 2/58 (3%) Query: 200 EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVN 257 EW+ A G + +LE+ CG G + LAR VL+++ +P +EA R +AA+ V Sbjct: 27 EWMAALVPGKR--VLEIGCGVGFATQALARRGLAVLSIDSLEPCLEATRLRVAASDVT 82 >gi|30018371|ref|NP_830002.1| 16S rRNA m(2)G 1207 methyltransferase [Bacillus cereus ATCC 14579] gi|29893911|gb|AAP07203.1| 16S rRNA m(2)G 1207 methyltransferase [Bacillus cereus ATCC 14579] Length = 199 Score = 37.0 bits (84), Expect = 5.4, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 209 IQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265 I+G++L++ CG G L LA+ F V V++ + ++ A+ N A N + N++I + S Sbjct: 58 IKGNILDVGCGYGPIGLSLAKEFQGREVHMVDVNERALGLAKENAANNKIKNIRIFQSS 116 >gi|229107787|ref|ZP_04237423.1| hypothetical protein bcere0018_880 [Bacillus cereus Rock1-15] gi|228675636|gb|EEL30844.1| hypothetical protein bcere0018_880 [Bacillus cereus Rock1-15] Length = 199 Score = 37.0 bits (84), Expect = 5.5, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 209 IQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265 I+G++L++ CG G L LA+ F V V++ + ++ A+ N A N + N++I + S Sbjct: 58 IKGNILDVGCGYGPIGLSLAKEFQGREVHMVDVNERALGLAKENAANNKIENIRIFQSS 116 >gi|222150949|ref|YP_002560102.1| hypothetical protein MCCL_0699 [Macrococcus caseolyticus JCSC5402] gi|222120071|dbj|BAH17406.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402] Length = 388 Score = 37.0 bits (84), Expect = 5.5, Method: Compositional matrix adjust. Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 14/91 (15%) Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVN--NVKIVRMSSKEF 269 D+L L+ +G FS+ + + + V+IAK S+E + N A N +N + + M + Sbjct: 216 DMLNLFAYSGGFSVAVGSNGYKTTNVDIAKRSIELMQQNFALNEMNLDDQTFITMDA--- 272 Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300 F+ L H F I +DPP Sbjct: 273 ---------FDALAYFTRHLKTFDIIVIDPP 294 >gi|229142907|ref|ZP_04271348.1| hypothetical protein bcere0012_880 [Bacillus cereus BDRD-ST24] gi|296500935|ref|YP_003662635.1| 16S rRNA m(2)G 1207 methyltransferase [Bacillus thuringiensis BMB171] gi|228640528|gb|EEK96917.1| hypothetical protein bcere0012_880 [Bacillus cereus BDRD-ST24] gi|296321987|gb|ADH04915.1| 16S rRNA m(2)G 1207 methyltransferase [Bacillus thuringiensis BMB171] Length = 199 Score = 37.0 bits (84), Expect = 5.5, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 209 IQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265 I+G++L++ CG G L LA+ F V V++ + ++ A+ N A N + N++I + S Sbjct: 58 IKGNILDVGCGYGPIGLSLAKEFQGREVHMVDVNERALGLAKENAANNKIENIRIFQSS 116 >gi|148269368|ref|YP_001243828.1| methyltransferase GidB [Thermotoga petrophila RKU-1] gi|166224627|sp|A5IJ79|RSMG_THEP1 RecName: Full=Ribosomal RNA small subunit methyltransferase G; AltName: Full=16S rRNA 7-methylguanosine methyltransferase; Short=16S rRNA m7G methyltransferase gi|147734912|gb|ABQ46252.1| methyltransferase GidB [Thermotoga petrophila RKU-1] Length = 228 Score = 37.0 bits (84), Expect = 5.5, Method: Compositional matrix adjust. Identities = 28/113 (24%), Positives = 58/113 (51%), Gaps = 9/113 (7%) Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSL 225 Y++E L V +R + ++ ++ +++E +L + ++G LL++ GNG L Sbjct: 26 YIEELLGVPYNLTAHRDL-------DSAVHKNVVEILLPLKEELKGTLLDVGSGNGVPGL 78 Query: 226 VLARHFD--RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276 +LA F +V+ ++ + SV R I + NV +V+ ++ F++ R E Sbjct: 79 ILAIFFSKLKVVLLDSREKSVNFLRGVIEKLDLENVSVVKERAENFSKERREE 131 >gi|15643470|ref|NP_228516.1| glucose-inhibited division protein B [Thermotoga maritima MSB8] gi|7387702|sp|Q9WZG6|RSMG_THEMA RecName: Full=Ribosomal RNA small subunit methyltransferase G; AltName: Full=16S rRNA 7-methylguanosine methyltransferase; Short=16S rRNA m7G methyltransferase gi|4981231|gb|AAD35789.1|AE001742_4 glucose-inhibited division protein B [Thermotoga maritima MSB8] Length = 238 Score = 37.0 bits (84), Expect = 5.5, Method: Compositional matrix adjust. Identities = 28/113 (24%), Positives = 58/113 (51%), Gaps = 9/113 (7%) Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSL 225 Y++E L V +R + ++ ++ +++E +L + ++G LL++ GNG L Sbjct: 36 YIEELLGVPYNLTAHRDL-------DSAVHKNVVEILLPLKEELKGTLLDVGSGNGVPGL 88 Query: 226 VLARHFD--RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276 +LA F +V+ ++ + SV R I + NV +V+ ++ F++ R E Sbjct: 89 ILAIFFSKLKVVLLDSREKSVNFLRGVIEKLDLENVSVVKERAENFSKERREE 141 >gi|218895236|ref|YP_002443647.1| ybxB protein [Bacillus cereus G9842] gi|218542476|gb|ACK94870.1| ybxB protein [Bacillus cereus G9842] Length = 199 Score = 37.0 bits (84), Expect = 5.6, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 209 IQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265 I+G++L++ CG G L LA+ F V V++ + ++ A+ N A N + N++I + S Sbjct: 58 IKGNILDVGCGYGPIGLSLAKEFQGREVHMVDVNERALGLAKENAANNKIENIRIFQSS 116 >gi|228963201|ref|ZP_04124370.1| hypothetical protein bthur0004_920 [Bacillus thuringiensis serovar sotto str. T04001] gi|228796459|gb|EEM43898.1| hypothetical protein bthur0004_920 [Bacillus thuringiensis serovar sotto str. T04001] Length = 199 Score = 36.6 bits (83), Expect = 5.7, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 2/62 (3%) Query: 209 IQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266 I+G++L++ CG G L LA+ F V V++ + ++ A+ N A N + N++I + S Sbjct: 58 IKGNILDVGCGYGPIGLSLAKEFQGREVHMVDVNERALGLAKENAANNKIENIRIFQSSV 117 Query: 267 KE 268 E Sbjct: 118 YE 119 >gi|108762676|ref|YP_630223.1| hypothetical protein MXAN_1988 [Myxococcus xanthus DK 1622] gi|108466556|gb|ABF91741.1| conserved hypothetical protein [Myxococcus xanthus DK 1622] Length = 398 Score = 36.6 bits (83), Expect = 5.8, Method: Compositional matrix adjust. Identities = 49/182 (26%), Positives = 77/182 (42%), Gaps = 32/182 (17%) Query: 178 LIYRQIENSF-----TQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD 232 Y + EN F G + ++ L A + +GD L+L+ +G F+L L+R Sbjct: 189 FTYHEGENRFEVDLQGDMKTGAFLDQVDNHLRAGELARGDALDLFSYHGGFALSLSRTCT 248 Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292 VLAVE + + A+ N AN NV + ++ F+ L+ D RF Sbjct: 249 SVLAVEQDEKAAARAKANAEANGRANVTVENANA------------FDVLRRFDTSGRRF 296 Query: 293 KTIFVDPP-----RSGLDDATVGMVQAYPHI---LYISCNPDSLCRDLSILSTTHTIERL 344 T+ +DPP R GL A ++AY + + PD L L S + ++R Sbjct: 297 DTVVLDPPGLAKRREGLATA----LRAYHELNLRAFRCLKPDGL---LVTCSCSGKLDRA 349 Query: 345 AL 346 A Sbjct: 350 AF 351 >gi|52078600|ref|YP_077391.1| hypothetical protein BL02799 [Bacillus licheniformis ATCC 14580] gi|52783962|ref|YP_089791.1| YbxB [Bacillus licheniformis ATCC 14580] gi|52001811|gb|AAU21753.1| hypothetical protein with SAM binding motif [Bacillus licheniformis ATCC 14580] gi|52346464|gb|AAU39098.1| YbxB [Bacillus licheniformis ATCC 14580] Length = 201 Score = 36.6 bits (83), Expect = 5.8, Method: Compositional matrix adjust. Identities = 19/54 (35%), Positives = 34/54 (62%), Gaps = 2/54 (3%) Query: 210 QGDLLELYCGNGNFSLVLARHF-DRVL-AVEIAKPSVEAARYNIAANHVNNVKI 261 +GD L++ CG G L LA F DR++ +++ + +VE ++ N N ++N+KI Sbjct: 59 EGDFLDVGCGYGPIGLSLAADFEDRMVHMIDVNERAVELSKENALNNQIDNIKI 112 >gi|319649125|ref|ZP_08003333.1| YbxB protein [Bacillus sp. BT1B_CT2] gi|317388825|gb|EFV69644.1| YbxB protein [Bacillus sp. BT1B_CT2] Length = 184 Score = 36.6 bits (83), Expect = 5.9, Method: Compositional matrix adjust. Identities = 19/54 (35%), Positives = 34/54 (62%), Gaps = 2/54 (3%) Query: 210 QGDLLELYCGNGNFSLVLARHF-DRVL-AVEIAKPSVEAARYNIAANHVNNVKI 261 +GD L++ CG G L LA F DR++ +++ + +VE ++ N N ++N+KI Sbjct: 42 EGDFLDVGCGYGPIGLSLAADFEDRMVHMIDVNERAVELSKENALNNQIDNIKI 95 >gi|221484867|gb|EEE23157.1| conserved hypothetical protein [Toxoplasma gondii GT1] Length = 540 Score = 36.6 bits (83), Expect = 6.0, Method: Compositional matrix adjust. Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 5/72 (6%) Query: 186 SFTQPNAGI----NVHMLEWVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIA 240 S NAG+ N E AAT+ +Q +L++ CGNG F L +L R F + V+ + Sbjct: 169 SAASGNAGVELAANSETEEGTDAATRHLQIPILDVGCGNGIFLLRLLRRGFTALAGVDYS 228 Query: 241 KPSVEAARYNIA 252 +++ AR N++ Sbjct: 229 AAAIQLARQNVS 240 >gi|237835895|ref|XP_002367245.1| hypothetical protein TGME49_049010 [Toxoplasma gondii ME49] gi|211964909|gb|EEB00105.1| hypothetical protein TGME49_049010 [Toxoplasma gondii ME49] gi|221506079|gb|EEE31714.1| conserved hypothetical protein [Toxoplasma gondii VEG] Length = 540 Score = 36.6 bits (83), Expect = 6.0, Method: Compositional matrix adjust. Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 5/72 (6%) Query: 186 SFTQPNAGI----NVHMLEWVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIA 240 S NAG+ N E AAT+ +Q +L++ CGNG F L +L R F + V+ + Sbjct: 169 SAASGNAGVELAANSETEEGTDAATRHLQIPILDVGCGNGIFLLRLLRRGFTALAGVDYS 228 Query: 241 KPSVEAARYNIA 252 +++ AR N++ Sbjct: 229 AAAIQLARQNVS 240 >gi|295692966|ref|YP_003601576.1| type i restriction-modification system, r subunit [Lactobacillus crispatus ST1] gi|295031072|emb|CBL50551.1| Type I restriction-modification system, R subunit [Lactobacillus crispatus ST1] Length = 1072 Score = 36.6 bits (83), Expect = 6.3, Method: Compositional matrix adjust. Identities = 27/106 (25%), Positives = 55/106 (51%), Gaps = 11/106 (10%) Query: 164 RDYVDERLTVAGRTLIYRQIEN--SFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNG 221 R +D++L AG + +++ N T+P G N+ + EWVL G + D L+ G Sbjct: 195 RQLIDQQLRDAGWEVDSQKLNNWTQKTEPQKGHNMAIAEWVLP--NGQRADYA-LFKGLK 251 Query: 222 NFSLVLARHFDRVLAVEIAKPSVEA------ARYNIAANHVNNVKI 261 + +V A+ +D+ +A ++A+P + + Y + +N + + K+ Sbjct: 252 FYGIVEAKKWDQDIAGQMAQPKEYSKEVPFRSDYRLVSNEMGDYKV 297 >gi|269102842|ref|ZP_06155539.1| methyltransferase [Photobacterium damselae subsp. damselae CIP 102761] gi|268162740|gb|EEZ41236.1| methyltransferase [Photobacterium damselae subsp. damselae CIP 102761] Length = 269 Score = 36.6 bits (83), Expect = 6.4, Method: Compositional matrix adjust. Identities = 16/61 (26%), Positives = 34/61 (55%) Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L ++ CG G+ +L +A FD V AV+ + +E ++ HV+N+ ++ + ++ Q Sbjct: 63 LFDMGCGTGSIALSVADWFDDVYAVDYSPKMLEICQHRADTQHVDNIHLINKAWEDSWQE 122 Query: 273 M 273 + Sbjct: 123 I 123 >gi|218260249|ref|ZP_03475621.1| hypothetical protein PRABACTJOHN_01283 [Parabacteroides johnsonii DSM 18315] gi|218224662|gb|EEC97312.1| hypothetical protein PRABACTJOHN_01283 [Parabacteroides johnsonii DSM 18315] Length = 420 Score = 36.6 bits (83), Expect = 6.4, Method: Compositional matrix adjust. Identities = 20/43 (46%), Positives = 27/43 (62%), Gaps = 1/43 (2%) Query: 207 KGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248 K QGD +L++ CGNGN+S LA VLA + ++ VE AR Sbjct: 232 KATQGDYILDIACGNGNYSGYLAEQGIDVLAFDYSQRMVELAR 274 >gi|332184656|gb|AEE26910.1| modification methylase, HemK family [Francisella cf. novicida 3523] Length = 284 Score = 36.6 bits (83), Expect = 6.8, Method: Compositional matrix adjust. Identities = 18/55 (32%), Positives = 33/55 (60%), Gaps = 2/55 (3%) Query: 213 LLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265 +L+L G G L LA +++AV++ + S++ A+ N AN++ NVK ++ S Sbjct: 119 ILDLGTGTGAIGLALAAELVNSQIVAVDLYQQSLDVAKNNAQANNITNVKFIQSS 173 >gi|281411935|ref|YP_003346014.1| methyltransferase GidB [Thermotoga naphthophila RKU-10] gi|281373038|gb|ADA66600.1| methyltransferase GidB [Thermotoga naphthophila RKU-10] Length = 228 Score = 36.6 bits (83), Expect = 6.9, Method: Compositional matrix adjust. Identities = 28/113 (24%), Positives = 58/113 (51%), Gaps = 9/113 (7%) Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSL 225 Y++E L V +R + ++ ++ +++E +L + ++G LL++ GNG L Sbjct: 26 YIEELLGVPYNLTAHRDL-------DSAVHKNVVEILLPLKEELKGTLLDVGSGNGVPGL 78 Query: 226 VLARHFD--RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276 +LA F +V+ ++ + SV R I + NV +V+ ++ F++ R E Sbjct: 79 ILAIFFSKLKVVLLDSREKSVNFLRGVIEKLDLENVSVVKERAENFSRERREE 131 >gi|189347631|ref|YP_001944160.1| Mg-protoporphyrin IX methyl transferase [Chlorobium limicola DSM 245] gi|189341778|gb|ACD91181.1| magnesium protoporphyrin O-methyltransferase [Chlorobium limicola DSM 245] Length = 232 Score = 36.6 bits (83), Expect = 7.3, Method: Compositional matrix adjust. Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 9/93 (9%) Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSL 225 Y D++L+ + N+ Q +A + W+ +L+ CG G FS+ Sbjct: 31 YGDDKLST---------VRNTVRQGHAVMMDKAFSWLQQLNLPKGATILDAGCGTGLFSI 81 Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNN 258 LA+ +V AV+IA VE A+ + VNN Sbjct: 82 RLAKEGYKVKAVDIASQMVEKAKADATMQGVNN 114 >gi|311739580|ref|ZP_07713415.1| SAM-dependent methyltransferase [Corynebacterium pseudogenitalium ATCC 33035] gi|311305396|gb|EFQ81464.1| SAM-dependent methyltransferase [Corynebacterium pseudogenitalium ATCC 33035] Length = 407 Score = 36.2 bits (82), Expect = 7.9, Method: Compositional matrix adjust. Identities = 33/147 (22%), Positives = 63/147 (42%), Gaps = 23/147 (15%) Query: 215 ELYCGNGNFSLVLARHF-DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273 +LY G G F VLA +V++V+ + + + +A V Sbjct: 272 DLYGGVGLFVPVLAHAVQGKVISVDYSPAATAGEQAGLADCDV----------------- 314 Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV--GMVQAYPHILYISCNPDSLCRD 331 E + +++ + + + +DPPR+G + + A ++++ C+P + RD Sbjct: 315 --EVKSAKVEQVAAQLPKPGAVVLDPPRTGAGEDVIRSVAAAAPQAVVHVGCDPATFARD 372 Query: 332 LSILST-THTIERLALFDQFPYTRHME 357 L + + I +LAL + FP T H E Sbjct: 373 LGYWNQHGYGIGKLALINAFPGTHHFE 399 Searching..................................................done Results from round 2 >gi|254781000|ref|YP_003065413.1| tRNA (uracil-5-)-methyltransferase [Candidatus Liberibacter asiaticus str. psy62] gi|254040677|gb|ACT57473.1| tRNA (uracil-5-)-methyltransferase [Candidatus Liberibacter asiaticus str. psy62] Length = 371 Score = 543 bits (1400), Expect = e-152, Method: Composition-based stats. Identities = 371/371 (100%), Positives = 371/371 (100%) Query: 1 MSGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60 MSGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH Sbjct: 1 MSGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60 Query: 61 IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVT 120 IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVT Sbjct: 61 IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVT 120 Query: 121 LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIY 180 LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIY Sbjct: 121 LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIY 180 Query: 181 RQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240 RQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA Sbjct: 181 RQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240 Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP Sbjct: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300 Query: 301 RSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360 RSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV Sbjct: 301 RSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360 Query: 361 LLVRKPSGWHQ 371 LLVRKPSGWHQ Sbjct: 361 LLVRKPSGWHQ 371 >gi|85060132|ref|YP_455834.1| tRNA (uracil-5-)-methyltransferase [Sodalis glossinidius str. 'morsitans'] gi|123518780|sp|Q2NQZ6|TRMA_SODGM RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|84780652|dbj|BAE75429.1| tRNA (uracil-5)-methyltransferase [Sodalis glossinidius str. 'morsitans'] Length = 370 Score = 490 bits (1262), Expect = e-136, Method: Composition-based stats. Identities = 305/364 (83%), Positives = 325/364 (89%) Query: 4 TLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63 TL IDQYEQQLAEK RLRQMMLAFQ P QIFRS+P HYRMRAEF IWHD DDLYHIMF Sbjct: 5 TLPIDQYEQQLAEKAARLRQMMLAFQAPEAQIFRSQPAHYRMRAEFRIWHDEDDLYHIMF 64 Query: 64 DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIY 123 D QTK R+RID+FMPGS LINALM EMM IR EPLLRAKLFQIDYLT+QS +A+VTLIY Sbjct: 65 DPQTKARIRIDHFMPGSPLINALMAEMMTAIRPEPLLRAKLFQIDYLTTQSGEAVVTLIY 124 Query: 124 HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQI 183 HR LDDAWRECA LRDAL AR Y IQ IGRANKTKI LDRDYVDERLTVAGRTLIY+QI Sbjct: 125 HRPLDDAWRECAAGLRDALRARGYHIQFIGRANKTKIYLDRDYVDERLTVAGRTLIYQQI 184 Query: 184 ENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 ENSFTQPNAGINVHMLEW LAAT+G QGDLLELYCGNGNFSL LARHFDRVLA EIAK S Sbjct: 185 ENSFTQPNAGINVHMLEWALAATEGAQGDLLELYCGNGNFSLALARHFDRVLATEIAKLS 244 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 VEAA YNIAANH++NV+IVRMS++EFTQAMR+EREF RLK+ID+ SYR +TIFVDPPRSG Sbjct: 245 VEAAHYNIAANHIDNVQIVRMSAEEFTQAMRKEREFTRLKEIDLQSYRCETIFVDPPRSG 304 Query: 304 LDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363 LD+ATV MVQAYP ILYISCNPDSLCR+LS LSTTHTIERLALFDQFPYT HMECGVLLV Sbjct: 305 LDEATVSMVQAYPQILYISCNPDSLCRNLSTLSTTHTIERLALFDQFPYTHHMECGVLLV 364 Query: 364 RKPS 367 RK + Sbjct: 365 RKAT 368 >gi|227113201|ref|ZP_03826857.1| tRNA (uracil-5-)-methyltransferase [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 367 Score = 470 bits (1210), Expect = e-130, Method: Composition-based stats. Identities = 245/361 (67%), Positives = 292/361 (80%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L I+QY+ QLAEK +RLR MM F P +FRS HYRMRAEF IWHDGD+LYHIMFD Sbjct: 6 LPIEQYDDQLAEKTERLRGMMAPFNAPEPVVFRSPVSHYRMRAEFRIWHDGDELYHIMFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTK+R+R+D F S LIN LM E++A I+ + +LR KLFQIDYL++ S + IV+L+YH Sbjct: 66 QQTKQRIRVDRFPAASELINRLMPELLAAIQPDSVLRRKLFQIDYLSTLSGEVIVSLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 R LD+ W+E A LRD+L A+ +++QLIGRA KTKICLDRDYVDE L VAGR +IYRQ+E Sbjct: 126 RALDEEWQEHARALRDSLTAQGFRLQLIGRATKTKICLDRDYVDECLPVAGRDMIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA IN+ MLEW L AT G GDLLELYCGNGNFSL LAR+F+RVLA EIAKPSV Sbjct: 186 NSFTQPNAAINIQMLEWALDATAGSTGDLLELYCGNGNFSLALARNFERVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAAN + NV+I+RM+++EFTQAM+ R+FNRLK ID+ SY+ +TIFVDPPRSGL Sbjct: 246 AAAQYNIAANQIENVQIIRMAAEEFTQAMQGVRQFNRLKGIDLTSYQCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 DD TV +VQAYP ILYISCNP++L +L LS TH I RLALFDQFPYT HMECGVLL R Sbjct: 306 DDETVKLVQAYPRILYISCNPETLSNNLQTLSETHDIRRLALFDQFPYTHHMECGVLLER 365 Query: 365 K 365 + Sbjct: 366 R 366 >gi|290513037|ref|ZP_06552400.1| tRNA (uracil-5-)-methyltransferase [Klebsiella sp. 1_1_55] gi|289774419|gb|EFD82424.1| tRNA (uracil-5-)-methyltransferase [Klebsiella sp. 1_1_55] Length = 366 Score = 467 bits (1203), Expect = e-130, Method: Composition-based stats. Identities = 246/361 (68%), Positives = 289/361 (80%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L +QYE QLAEKV RL+ MM F P ++FRS HYRMRAEF +WHDGDDLYHI+FD Sbjct: 6 LPTEQYEAQLAEKVVRLQTMMAPFATPVPEVFRSPVSHYRMRAEFRLWHDGDDLYHIIFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQT+ R+R+D F S LIN LM M+ +R P+LR KLFQIDYLT+ S+QA+V+L+YH Sbjct: 66 QQTRSRIRVDSFPAASALINQLMTAMLEGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + LDDAWRE A LRDAL A+ + LIGRA KTKI LD+DY+DERL V GR +IYRQ+E Sbjct: 126 KKLDDAWREQAEALRDALRAQGLNVHLIGRATKTKIELDQDYIDERLPVGGREMIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+ MLEW L TKG GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKGATGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAANH++NV+I+RM+++EFTQAM REFNRL+ ID+ SY+ +TIFVDPPRSGL Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLQSYQCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D T MVQAYP ILYISCNP++LCR+L LS TH + RLALFDQFPYT HMECGVLL R Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCRNLETLSQTHNVTRLALFDQFPYTHHMECGVLLTR 365 Query: 365 K 365 K Sbjct: 366 K 366 >gi|50123159|ref|YP_052326.1| tRNA (uracil-5-)-methyltransferase [Pectobacterium atrosepticum SCRI1043] gi|115305868|sp|Q6CZB4|TRMA_ERWCT RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|49613685|emb|CAG77136.1| tRNA (uracil-5)-methyltransferase [Pectobacterium atrosepticum SCRI1043] Length = 367 Score = 467 bits (1203), Expect = e-130, Method: Composition-based stats. Identities = 242/361 (67%), Positives = 292/361 (80%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L I+ Y+ QLAEK +RLR MM F P +FRS HYRMRAEF IWHDGD+LYHIMFD Sbjct: 6 LPIEDYDDQLAEKTERLRGMMAPFNAPEPAVFRSPVSHYRMRAEFRIWHDGDELYHIMFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTK+R+R+D F S LIN LM EM+A I+ +P+LR KLFQIDYL++ S + IV+L+YH Sbjct: 66 QQTKQRIRVDRFPAASELINRLMPEMLAAIQPDPVLRRKLFQIDYLSTLSGEVIVSLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 R L++ W+E A LRD+L A+ + +QLIGRA KTKICLDRDYVDE L VAGR +IYRQ+E Sbjct: 126 RALNEEWQEHARALRDSLTAQGFNLQLIGRATKTKICLDRDYVDECLPVAGRNMIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+ MLEW L AT G +GDLLELYCGNGNFSL LAR+F+RVLA EIAKPSV Sbjct: 186 NSFTQPNAAVNIQMLEWALDATAGSKGDLLELYCGNGNFSLALARNFERVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAAN + NV+I+RM+++EFTQAM+ R+FNRL+ ID+ SY+ +TIFVDPPRSGL Sbjct: 246 AAAQYNIAANQIENVQIIRMAAEEFTQAMQGVRQFNRLQGIDLTSYQCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 DD TV +VQAYP ILYISCNP++L +L LS TH I RLALFDQFPYT HMECGVLL + Sbjct: 306 DDETVKLVQAYPRILYISCNPETLSNNLKTLSETHDIRRLALFDQFPYTHHMECGVLLEK 365 Query: 365 K 365 + Sbjct: 366 R 366 >gi|227329571|ref|ZP_03833595.1| tRNA (uracil-5-)-methyltransferase [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 367 Score = 467 bits (1202), Expect = e-129, Method: Composition-based stats. Identities = 242/361 (67%), Positives = 292/361 (80%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L I+QY+ QLAEK +RLR MM F P +FRS HYRMRAEF IWH+GD+LYHIMFD Sbjct: 6 LPIEQYDDQLAEKTERLRGMMAPFNAPEPVVFRSPVSHYRMRAEFRIWHEGDELYHIMFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTK+R+R+D F S LIN LM E++A I+ + +LR KLFQIDYL++ S + IV+L+YH Sbjct: 66 QQTKQRIRVDRFPAASELINRLMPELLAAIQPDSVLRRKLFQIDYLSTLSGEVIVSLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 R LD+ W+E A LRD+L A+ +++QLIGRA KTKICLDRDYVDE L VAGR +IYRQ+E Sbjct: 126 RALDEEWQEHARALRDSLTAQGFRLQLIGRATKTKICLDRDYVDECLPVAGRDMIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA IN+ MLEW L AT G GDLLELYCGNGNFSL LAR+F+RVLA EIAKPSV Sbjct: 186 NSFTQPNAAINIQMLEWALDATAGSTGDLLELYCGNGNFSLALARNFERVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAAN + NV+I+RM+++EFTQAM+ R+FNRL+ ID+ SY+ +TIFVDPPRSGL Sbjct: 246 AAAQYNIAANQIENVQIIRMAAEEFTQAMQGVRQFNRLQGIDLTSYQCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 DD TV +VQAYP ILYISCNP++L +L LS TH I RLALFDQFPYT HMECGVLL + Sbjct: 306 DDETVKLVQAYPRILYISCNPETLSNNLQTLSETHDIRRLALFDQFPYTHHMECGVLLEK 365 Query: 365 K 365 + Sbjct: 366 R 366 >gi|307128964|ref|YP_003880980.1| tRNA (uracil-5-)-methyltransferase [Dickeya dadantii 3937] gi|306526493|gb|ADM96423.1| tRNA (uracil-5-)-methyltransferase [Dickeya dadantii 3937] Length = 367 Score = 467 bits (1201), Expect = e-129, Method: Composition-based stats. Identities = 241/361 (66%), Positives = 291/361 (80%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L IDQY+ QL EK RL MM F P +FRS HYRMRAEF IWHDGDDLYHI+FD Sbjct: 6 LPIDQYDAQLEEKTGRLGAMMAPFDAPAPTVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTK+R+R+D F S LIN LM +++ +R EP+LR KLFQIDYL++ S + +V+L+YH Sbjct: 66 QQTKQRIRVDRFPAASELINRLMPALISALRAEPVLRRKLFQIDYLSTLSGEIVVSLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + LDD W++CA LRD LHA+ + +QLIGRA KTKICLDRDYVDE L VAGR +IYRQ+E Sbjct: 126 KALDDEWQQCARLLRDQLHAQGFALQLIGRATKTKICLDRDYVDECLPVAGRQMIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+ MLEW L+AT+G GDLLELYCGNGNFSL LAR+F+RVLA EIAKPSV Sbjct: 186 NSFTQPNAMMNIQMLEWALSATQGSTGDLLELYCGNGNFSLALARNFERVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAAN ++NV+I+RM+++EFTQAM R+FNRL+ ID+ YR +TIFVDPPRSGL Sbjct: 246 AAAQYNIAANQIDNVQIIRMAAEEFTQAMNGVRQFNRLQGIDLAGYRCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 DD TV +VQAYP ILYISCNP++LC +L LS TH I +LALFDQFPYT HMECGVLL + Sbjct: 306 DDDTVKLVQAYPRILYISCNPETLCANLETLSQTHRISQLALFDQFPYTHHMECGVLLEK 365 Query: 365 K 365 + Sbjct: 366 R 366 >gi|253686597|ref|YP_003015787.1| tRNA (uracil-5-)-methyltransferase [Pectobacterium carotovorum subsp. carotovorum PC1] gi|259547828|sp|C6DHQ1|TRMA_PECCP RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|251753175|gb|ACT11251.1| tRNA (uracil-5-)-methyltransferase [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 367 Score = 467 bits (1201), Expect = e-129, Method: Composition-based stats. Identities = 242/361 (67%), Positives = 292/361 (80%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L I+QY+ QLAEK +RLR MM F P +FRS HYRMRAEF IWH+GD+LYHIMFD Sbjct: 6 LPIEQYDDQLAEKTERLRGMMAPFNAPEPVVFRSPVSHYRMRAEFRIWHEGDELYHIMFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTK+R+R+D F S LIN LM E++A I+ + +LR KLFQIDYL++ S + IV+L+YH Sbjct: 66 QQTKQRIRVDRFPAASELINRLMPELLAAIQPDSVLRRKLFQIDYLSTLSGEVIVSLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 R LD+ W+E A LRD+L A+ +++QLIGRA KTKICLDRDYVDE L VAGR +IYRQ+E Sbjct: 126 RALDEEWQEHARALRDSLTAQGFRLQLIGRATKTKICLDRDYVDECLPVAGRDMIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA IN+ MLEW L AT G GDLLELYCGNGNFSL LAR+F+RVLA EIAKPSV Sbjct: 186 NSFTQPNAAINIQMLEWALDATAGSTGDLLELYCGNGNFSLALARNFERVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAAN + NV+I+RM+++EFTQAM+ R+FNRL+ ID+ SY+ +TIFVDPPRSGL Sbjct: 246 AAAQYNIAANQIENVQIIRMAAEEFTQAMQGVRQFNRLQGIDLTSYQCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 DD TV +VQAYP ILYISCNP++L +L LS TH I RLALFDQFPYT HMECGVLL + Sbjct: 306 DDETVKLVQAYPRILYISCNPETLSHNLQTLSETHDIRRLALFDQFPYTHHMECGVLLEK 365 Query: 365 K 365 + Sbjct: 366 R 366 >gi|288937811|ref|YP_003441870.1| tRNA (uracil-5-)-methyltransferase [Klebsiella variicola At-22] gi|288892520|gb|ADC60838.1| tRNA (uracil-5-)-methyltransferase [Klebsiella variicola At-22] Length = 366 Score = 466 bits (1200), Expect = e-129, Method: Composition-based stats. Identities = 246/361 (68%), Positives = 288/361 (79%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L +QYE QLAEKV RL+ MM F P ++FRS HYRMRAEF +WHDGDDLYHI+FD Sbjct: 6 LPTEQYEAQLAEKVVRLQTMMAPFAAPVPEVFRSPVSHYRMRAEFRLWHDGDDLYHIIFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQT+ R+R+D F S LIN LM M+ +R P LR KLFQIDYLT+ S+QA+V+L+YH Sbjct: 66 QQTRSRIRVDSFPAASALINQLMTAMLEGVRNNPELRHKLFQIDYLTTLSNQAVVSLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + LDDAWRE A LRDAL A+ + LIGRA KTKI LD+DY+DERL V GR +IYRQ+E Sbjct: 126 KKLDDAWREQAEALRDALRAQGLNVHLIGRATKTKIELDQDYIDERLPVGGREMIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+ MLEW L TKG GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKGATGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAANH++NV+I+RM+++EFTQAM REFNRL+ ID+ SY+ +TIFVDPPRSGL Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLQSYQCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D T MVQAYP ILYISCNP++LCR+L LS TH + RLALFDQFPYT HMECGVLL R Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCRNLETLSQTHNVTRLALFDQFPYTHHMECGVLLTR 365 Query: 365 K 365 K Sbjct: 366 K 366 >gi|311281561|ref|YP_003943792.1| tRNA (uracil-5-)-methyltransferase [Enterobacter cloacae SCF1] gi|308750756|gb|ADO50508.1| tRNA (uracil-5-)-methyltransferase [Enterobacter cloacae SCF1] Length = 367 Score = 466 bits (1198), Expect = e-129, Method: Composition-based stats. Identities = 240/361 (66%), Positives = 287/361 (79%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L +QYE QLAEKV RL+ MM F P ++FRS HYRMRAEF +WH+GDDLYHI+FD Sbjct: 6 LPTEQYEAQLAEKVVRLQSMMTPFAAPVPEVFRSPVSHYRMRAEFRLWHEGDDLYHIIFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 Q TK+R+R+D F S LIN LM ++A ++ EP+LR KLFQ+DYLT+ S+QAIV+L+YH Sbjct: 66 QATKQRIRVDSFPAASQLINVLMKAVIAGVKDEPVLRHKLFQVDYLTTMSNQAIVSLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + L D W+ A RLRDAL A +QLIGRA KTKI LDRDY+DERL V GR +IYRQ+E Sbjct: 126 KALGDEWQSAATRLRDALRAANLNVQLIGRATKTKIALDRDYIDERLPVGGREMIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+ MLEW T G GDLLELYCGNGNFSL LAR+F RVLA EIAKPSV Sbjct: 186 NSFTQPNAAMNIQMLEWAQDVTTGATGDLLELYCGNGNFSLALARNFTRVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 +A+YNIAANH++NV+I+RMS++EFTQAM R+FNRL+ ID+ SY+ +TIFVDPPRSGL Sbjct: 246 ASAQYNIAANHIDNVQIIRMSAEEFTQAMNGVRQFNRLQGIDLQSYQCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D T MVQAYP ILYISCNP++LC++L LS TH +ERLALFDQFPYT HMECGVLL R Sbjct: 306 DGETEKMVQAYPRILYISCNPETLCKNLETLSQTHRVERLALFDQFPYTHHMECGVLLTR 365 Query: 365 K 365 K Sbjct: 366 K 366 >gi|238892362|ref|YP_002917096.1| tRNA (uracil-5-)-methyltransferase [Klebsiella pneumoniae NTUH-K2044] gi|330001331|ref|ZP_08303948.1| tRNA (uracil-5-)-methyltransferase [Klebsiella sp. MS 92-3] gi|238544678|dbj|BAH61029.1| tRNA (uracil-5-)-methyltransferase [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|328537722|gb|EGF63927.1| tRNA (uracil-5-)-methyltransferase [Klebsiella sp. MS 92-3] Length = 366 Score = 465 bits (1196), Expect = e-129, Method: Composition-based stats. Identities = 246/361 (68%), Positives = 290/361 (80%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L +QYE QLAEKV RL+ MM F P ++FRS HYRMRAEF +WHDGDDLYHI+FD Sbjct: 6 LPTEQYEAQLAEKVVRLQTMMAPFAAPVPEVFRSPVSHYRMRAEFRLWHDGDDLYHIIFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQT+ R+R+D F S LIN LM M+ +R P+LR KLFQIDYLT+ S+QA+V+L+YH Sbjct: 66 QQTRSRIRVDSFPAASALINQLMTAMLEGVRNNPVLRQKLFQIDYLTTLSNQAVVSLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + LDDAWRE A LRDAL A+ + LIGRA KTKI LD+DY+DERL V GR +IYRQ+E Sbjct: 126 KKLDDAWREQAEALRDALRAQGLNVHLIGRATKTKIELDQDYIDERLPVGGREMIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+ MLEW L TKG GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKGATGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAANH++NV+I+RM+++EFTQAM R+FNRL+ ID+HSY+ +TIFVDPPRSGL Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVRQFNRLQGIDLHSYQCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D T MVQAYP ILYISCNP++LCR+L LS TH + RLALFDQFPYT HMECGVLL R Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCRNLETLSQTHNVTRLALFDQFPYTHHMECGVLLTR 365 Query: 365 K 365 K Sbjct: 366 K 366 >gi|156935907|ref|YP_001439823.1| tRNA (uracil-5-)-methyltransferase [Cronobacter sakazakii ATCC BAA-894] gi|156534161|gb|ABU78987.1| hypothetical protein ESA_03801 [Cronobacter sakazakii ATCC BAA-894] Length = 367 Score = 464 bits (1195), Expect = e-129, Method: Composition-based stats. Identities = 248/361 (68%), Positives = 293/361 (81%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L IDQY+ QLAEK +RL+ MM F P ++FRS HYRMRAEF +WHDGDDLYHI+FD Sbjct: 7 LPIDQYDAQLAEKTERLQSMMAPFAAPAPEVFRSPVSHYRMRAEFRLWHDGDDLYHIIFD 66 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 Q+T+ R+R+D F S LINALM M+A IR LR KLFQIDYLT++S QA+V+L+YH Sbjct: 67 QETRSRIRVDSFPAASELINALMPRMIAGIRDNRTLRHKLFQIDYLTTRSQQAVVSLLYH 126 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 R LDDAWRE A RLRDAL A + + IGRA KTKI LD+DY+DERL VAG +IYRQ+E Sbjct: 127 RALDDAWREEATRLRDALRADGFDVHFIGRATKTKIMLDQDYIDERLPVAGTEMIYRQVE 186 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+HMLEW L T+G +GDLLELYCGNGNFSL LAR+F+RVLA EIAKPSV Sbjct: 187 NSFTQPNAAMNIHMLEWALDVTQGSKGDLLELYCGNGNFSLALARNFNRVLATEIAKPSV 246 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAANH++NV+I+RM+++EFTQAM REFNRL+ ID+ SY+ +TIFVDPPRSGL Sbjct: 247 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 306 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D TV MVQAYPHILYISCNP +LC +L LS TH +ERLALFDQFPYT HMECGVLL R Sbjct: 307 DQETVKMVQAYPHILYISCNPQTLCENLDTLSQTHRVERLALFDQFPYTHHMECGVLLTR 366 Query: 365 K 365 + Sbjct: 367 R 367 >gi|171769880|sp|A7ML95|TRMA_ENTS8 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT Length = 366 Score = 464 bits (1195), Expect = e-129, Method: Composition-based stats. Identities = 248/361 (68%), Positives = 293/361 (81%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L IDQY+ QLAEK +RL+ MM F P ++FRS HYRMRAEF +WHDGDDLYHI+FD Sbjct: 6 LPIDQYDAQLAEKTERLQSMMAPFAAPAPEVFRSPVSHYRMRAEFRLWHDGDDLYHIIFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 Q+T+ R+R+D F S LINALM M+A IR LR KLFQIDYLT++S QA+V+L+YH Sbjct: 66 QETRSRIRVDSFPAASELINALMPRMIAGIRDNRTLRHKLFQIDYLTTRSQQAVVSLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 R LDDAWRE A RLRDAL A + + IGRA KTKI LD+DY+DERL VAG +IYRQ+E Sbjct: 126 RALDDAWREEATRLRDALRADGFDVHFIGRATKTKIMLDQDYIDERLPVAGTEMIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+HMLEW L T+G +GDLLELYCGNGNFSL LAR+F+RVLA EIAKPSV Sbjct: 186 NSFTQPNAAMNIHMLEWALDVTQGSKGDLLELYCGNGNFSLALARNFNRVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAANH++NV+I+RM+++EFTQAM REFNRL+ ID+ SY+ +TIFVDPPRSGL Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D TV MVQAYPHILYISCNP +LC +L LS TH +ERLALFDQFPYT HMECGVLL R Sbjct: 306 DQETVKMVQAYPHILYISCNPQTLCENLDTLSQTHRVERLALFDQFPYTHHMECGVLLTR 365 Query: 365 K 365 + Sbjct: 366 R 366 >gi|260595992|ref|YP_003208563.1| tRNA (uracil-5-)-methyltransferase [Cronobacter turicensis z3032] gi|260215169|emb|CBA26983.1| tRNA (uracil-5-)-methyltransferase [Cronobacter turicensis z3032] Length = 367 Score = 464 bits (1195), Expect = e-129, Method: Composition-based stats. Identities = 244/361 (67%), Positives = 289/361 (80%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L IDQY+ QLAEK +RL+ MM F P ++FRS HYRMRAEF +WHDGDDLYHI+FD Sbjct: 6 LPIDQYDAQLAEKTERLQSMMAPFAAPAPEVFRSPVSHYRMRAEFRLWHDGDDLYHIIFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 Q+T+ R+R+D F S LINALM M+ IR LR KLFQIDYLT++S QA+V+L+YH Sbjct: 66 QETRSRIRVDSFPAASELINALMPRMIEGIRGNRTLRHKLFQIDYLTTRSQQAVVSLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 R L D WRE A RLRDAL A + + IGRA KTKI LD+DY+DERL VAG +IYRQ+E Sbjct: 126 RALGDDWREEATRLRDALRADGFDVHFIGRATKTKIMLDQDYIDERLPVAGTEMIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+HMLEW L AT G +GDLLELYCGNGNFSL LAR+F+RVLA EIAKPSV Sbjct: 186 NSFTQPNAAMNIHMLEWALDATLGSKGDLLELYCGNGNFSLALARNFNRVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAANH++NV+I+RM+++EFTQAM REFNRL+ +D+ SY+ +TIFVDPPRSGL Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGVDLKSYQCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D TV MVQAYP ILYISCNP +LC +L LS TH +ERLALFDQFPYT HMECGVLL R Sbjct: 306 DQETVKMVQAYPRILYISCNPQTLCENLETLSQTHRVERLALFDQFPYTHHMECGVLLTR 365 Query: 365 K 365 + Sbjct: 366 R 366 >gi|261343029|ref|ZP_05970887.1| tRNA (uracil-5-)-methyltransferase [Enterobacter cancerogenus ATCC 35316] gi|288314783|gb|EFC53721.1| tRNA (uracil-5-)-methyltransferase [Enterobacter cancerogenus ATCC 35316] Length = 366 Score = 464 bits (1195), Expect = e-129, Method: Composition-based stats. Identities = 247/361 (68%), Positives = 291/361 (80%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L +QY+ QLAEKV RL+ MM F P ++FRS HYRMRAEF IWHDGDDLYHI+FD Sbjct: 6 LPTEQYDAQLAEKVVRLQSMMTPFNAPVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTK R+R++ F S LIN LM MM +R P+LR KLFQIDYLT+QS+QAIV+L+YH Sbjct: 66 QQTKSRIRVNSFPAASELINQLMTLMMDGVRNNPVLRHKLFQIDYLTTQSNQAIVSLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + L+D WRE A LRDAL A+ + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E Sbjct: 126 KALNDEWREQAEALRDALRAQNLNVHLIGRATKTKIMLDQDYIDERLPVAGKEMIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +NV MLEW L ATKG GDLLELYCGNGNFSL LAR+F+RVLA EIAKPSV Sbjct: 186 NSFTQPNAAMNVQMLEWALNATKGSTGDLLELYCGNGNFSLALARNFERVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAANH++NV+I+RM+++EFTQAM REFNRL+ ID+ SY+ +TIFVDPPRSGL Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D T MVQAYP ILYISCNP++LC++L LS TH +ERLALFDQFPYT HMECGVLL Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHNVERLALFDQFPYTHHMECGVLLTA 365 Query: 365 K 365 K Sbjct: 366 K 366 >gi|157373003|ref|YP_001480992.1| tRNA (uracil-5-)-methyltransferase [Serratia proteamaculans 568] gi|172047791|sp|A8GL74|TRMA_SERP5 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|157324767|gb|ABV43864.1| tRNA (uracil-5-)-methyltransferase [Serratia proteamaculans 568] Length = 367 Score = 464 bits (1195), Expect = e-129, Method: Composition-based stats. Identities = 235/362 (64%), Positives = 289/362 (79%) Query: 4 TLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63 L I++Y+ QLAEK RL+ +M F P ++FRS HYRMRAEF IWHD D++YHIMF Sbjct: 5 NLPIERYDDQLAEKTARLKTLMSPFTAPEPEVFRSPVSHYRMRAEFRIWHDEDEMYHIMF 64 Query: 64 DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIY 123 DQQTK+R+R+D F S LIN LM ++A I+ EP+LR KLFQIDYL+++S + I +L+Y Sbjct: 65 DQQTKQRIRVDKFPAASELINRLMSALIAAIKPEPILRRKLFQIDYLSTRSGKIIASLLY 124 Query: 124 HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQI 183 HR LDD W++ A +LRD L A+ + +QLIGRA+K KI LD+DYVDE L VAGR +IYRQ+ Sbjct: 125 HRKLDDEWQQQAEKLRDDLRAQGFDLQLIGRASKMKIMLDQDYVDEVLPVAGRDMIYRQV 184 Query: 184 ENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 ENSFTQPNA +N+ MLEW L T G +GDLLELYCGNGNFSL LAR+F+RVLA EIAKPS Sbjct: 185 ENSFTQPNAALNIQMLEWALDVTTGSKGDLLELYCGNGNFSLALARNFERVLATEIAKPS 244 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 V AA+YNIAAN ++NV+I+RM++++FTQAM REFNRLK ID+ SY +TIFVDPPRSG Sbjct: 245 VAAAQYNIAANQIDNVQIIRMAAEDFTQAMNGVREFNRLKGIDLSSYNCETIFVDPPRSG 304 Query: 304 LDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363 LDD TV MVQAYP ILYISCNP++LC +L L TH+I RLALFDQFPYT HMECGVLL Sbjct: 305 LDDETVKMVQAYPRILYISCNPETLCANLETLQQTHSISRLALFDQFPYTHHMECGVLLE 364 Query: 364 RK 365 ++ Sbjct: 365 KR 366 >gi|270265153|ref|ZP_06193415.1| tRNA (uracil-5-)-methyltransferase [Serratia odorifera 4Rx13] gi|270040787|gb|EFA13889.1| tRNA (uracil-5-)-methyltransferase [Serratia odorifera 4Rx13] Length = 367 Score = 464 bits (1195), Expect = e-129, Method: Composition-based stats. Identities = 235/362 (64%), Positives = 292/362 (80%) Query: 4 TLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63 L I++Y+ QLAEK RL+ +M F P ++FRS+ HYRMRAEF IWHD D++YHIMF Sbjct: 5 NLPIERYDDQLAEKTARLKTLMSPFTAPEPEVFRSQVEHYRMRAEFRIWHDEDEMYHIMF 64 Query: 64 DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIY 123 DQQTK+R+R+D F S LIN LM ++A I+ EP+LR KLFQIDYL+++S + I +L+Y Sbjct: 65 DQQTKQRIRVDRFPAASELINRLMSALIAAIKPEPILRHKLFQIDYLSTRSGKIIASLLY 124 Query: 124 HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQI 183 HR LD+AW++ A +LRD+L A+ + +QLIGRA+K KI LD+DYVDE L VAGR +IYRQ+ Sbjct: 125 HRKLDEAWQQQAEKLRDSLRAQGFDLQLIGRASKMKIMLDQDYVDEVLPVAGRDMIYRQV 184 Query: 184 ENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 ENSFTQPNA +N+ MLEW L T G +GDLLELYCGNGNFSL LAR+F+RVLA EIAKPS Sbjct: 185 ENSFTQPNAAMNIQMLEWALDVTTGSKGDLLELYCGNGNFSLALARNFERVLATEIAKPS 244 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 V AA+YNIAANH++NV+I+RM++++FTQAM REFNRLK ID+ SY +TIFVDPPRSG Sbjct: 245 VAAAQYNIAANHIDNVQIIRMAAEDFTQAMNGVREFNRLKGIDLSSYNCETIFVDPPRSG 304 Query: 304 LDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363 LDD TV MVQAYP ILYISCNP++LC +L L TH + RLALFDQFPYT HMECGVLL Sbjct: 305 LDDETVKMVQAYPRILYISCNPETLCANLETLQETHRVSRLALFDQFPYTHHMECGVLLE 364 Query: 364 RK 365 ++ Sbjct: 365 KR 366 >gi|262041733|ref|ZP_06014924.1| tRNA (uracil-5-)-methyltransferase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259040920|gb|EEW42000.1| tRNA (uracil-5-)-methyltransferase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 366 Score = 464 bits (1194), Expect = e-128, Method: Composition-based stats. Identities = 245/361 (67%), Positives = 289/361 (80%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L +QYE QLAEKV RL+ MM F P ++FRS HYRMRAEF +WHDGDDLYHI+FD Sbjct: 6 LPTEQYEAQLAEKVVRLQTMMAPFAAPVPEVFRSPVSHYRMRAEFRLWHDGDDLYHIIFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQT+ R+R+D F S LIN LM M+ +R P+LR KLFQIDYLT+ S+QA+V+L+YH Sbjct: 66 QQTRSRIRVDSFPAASALINQLMTAMLEGVRNNPVLRQKLFQIDYLTTLSNQAVVSLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + LDDAWRE A LRD L A+ + LIGRA KTKI LD+DY+DERL V GR +IYRQ+E Sbjct: 126 KKLDDAWREQAEALRDTLRAQGLNVHLIGRATKTKIELDQDYIDERLPVGGREMIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+ MLEW L TKG GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKGATGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAANH++NV+I+RM+++EFTQAM R+FNRL+ ID+HSY+ +TIFVDPPRSGL Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVRQFNRLQGIDLHSYQCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D T MVQAYP ILYISCNP++LCR+L LS TH + RLALFDQFPYT HMECGVLL R Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCRNLETLSQTHNVTRLALFDQFPYTHHMECGVLLTR 365 Query: 365 K 365 K Sbjct: 366 K 366 >gi|152972754|ref|YP_001337900.1| tRNA (uracil-5-)-methyltransferase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|172052447|sp|A6TGE9|TRMA_KLEP7 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|150957603|gb|ABR79633.1| tRNA (uracil-5-)-methyltransferase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 366 Score = 464 bits (1193), Expect = e-128, Method: Composition-based stats. Identities = 245/361 (67%), Positives = 290/361 (80%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L +QYE QLAEKV RL+ MM F P ++FRS HYRMRAEF +WHDGDDLYHI+FD Sbjct: 6 LPTEQYEAQLAEKVVRLQTMMAPFAAPVPEVFRSPVSHYRMRAEFRLWHDGDDLYHIIFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQT+ R+R+D F S LIN LM M+ +R P+LR KLFQIDYLT+ S+QA+V+++YH Sbjct: 66 QQTRSRIRVDSFPAASALINQLMTAMLEGVRNNPVLRQKLFQIDYLTTLSNQAVVSVLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + LDDAWRE A LRDAL A+ + LIGRA KTKI LD+DY+DERL V GR +IYRQ+E Sbjct: 126 KKLDDAWREQAEALRDALRAQGLNVHLIGRATKTKIELDQDYIDERLPVGGREMIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+ MLEW L TKG GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKGATGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAANH++NV+I+RM+++EFTQAM R+FNRL+ ID+HSY+ +TIFVDPPRSGL Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVRQFNRLQGIDLHSYQCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D T MVQAYP ILYISCNP++LCR+L LS TH + RLALFDQFPYT HMECGVLL R Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCRNLETLSQTHNVTRLALFDQFPYTHHMECGVLLTR 365 Query: 365 K 365 K Sbjct: 366 K 366 >gi|206579514|ref|YP_002241174.1| tRNA (uracil-5-)-methyltransferase [Klebsiella pneumoniae 342] gi|226705982|sp|B5XZ11|TRMA_KLEP3 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|206568572|gb|ACI10348.1| tRNA (uracil-5-)-methyltransferase [Klebsiella pneumoniae 342] Length = 366 Score = 464 bits (1193), Expect = e-128, Method: Composition-based stats. Identities = 244/361 (67%), Positives = 287/361 (79%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L +QYE QLAEKV RL+ MM F P ++FRS HYRMRAEF +WHDGDDLYHI+FD Sbjct: 6 LPTEQYEAQLAEKVVRLQTMMAPFAAPVPEVFRSPVSHYRMRAEFRLWHDGDDLYHIIFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQT+ R+R+D F S LIN LM M+ +R P+LR KLFQIDYLT+ S+QA+V+L+YH Sbjct: 66 QQTRSRIRVDSFPAASALINQLMTAMLEGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + LDD WRE A LRDAL A+ + LIGRA KTKI LD+DY+DERL V GR +IYRQ+E Sbjct: 126 KKLDDTWREQAEALRDALRAQGLNVHLIGRATKTKIELDQDYIDERLPVGGREMIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+ MLEW L TK GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKEATGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAANH++NV+I+RM+++EFTQAM REFNRL+ ID+ SY+ +TIFVDPPRSGL Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLQSYQCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D T MVQAYP ILYISCNP++LCR+L LS TH + RLALFDQFPYT HMECGVLL R Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCRNLETLSQTHNVTRLALFDQFPYTHHMECGVLLTR 365 Query: 365 K 365 K Sbjct: 366 K 366 >gi|300721342|ref|YP_003710613.1| tRNA (uracil-5-)-methyltransferase [Xenorhabdus nematophila ATCC 19061] gi|297627830|emb|CBJ88365.1| tRNA (uracil-5-)-methyltransferase [Xenorhabdus nematophila ATCC 19061] Length = 366 Score = 463 bits (1192), Expect = e-128, Method: Composition-based stats. Identities = 234/365 (64%), Positives = 295/365 (80%) Query: 1 MSGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60 M L + YE QL EKV RL+ MM F VP +FRS HYRMRAEF IWH+ DDLYH Sbjct: 1 MQNALPTENYENQLMEKVHRLKGMMSPFSVPEPDVFRSPASHYRMRAEFRIWHEEDDLYH 60 Query: 61 IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVT 120 IMFDQQTK+R+RID F + LIN++M ++A ++ P+LR KLFQ+DYL+++S++ IV+ Sbjct: 61 IMFDQQTKQRIRIDQFPVANQLINSMMQAIIAGVKDNPVLRHKLFQVDYLSTRSNKIIVS 120 Query: 121 LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIY 180 L+YH+ L+D WRE AI LR+ L A + +QLIGRA+KTKI LD DY+DE L+VAG+T+IY Sbjct: 121 LLYHKKLNDEWREQAIDLRNQLIAEGFDVQLIGRASKTKIMLDHDYIDEELSVAGKTMIY 180 Query: 181 RQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240 RQ+ENSFTQPNA IN+HMLEW + TK +GDLLELYCGNGNFSL LA++F+RVLA EIA Sbjct: 181 RQVENSFTQPNASINIHMLEWAIDITKDSKGDLLELYCGNGNFSLALAQNFERVLATEIA 240 Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300 KPSV AA++NIAAN ++NV+I+RMS++EFTQAM EREFNRL+ ID+ SY+ +TIFVDPP Sbjct: 241 KPSVAAAQFNIAANQIDNVQIIRMSAEEFTQAMNGEREFNRLQGIDLKSYQCETIFVDPP 300 Query: 301 RSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360 RSGLD+ TV MVQAYP ILYISCNP++LC++L L+ TH + +LALFDQFPYT HMECGV Sbjct: 301 RSGLDEKTVRMVQAYPRILYISCNPETLCQNLETLTQTHHVSKLALFDQFPYTHHMECGV 360 Query: 361 LLVRK 365 LL ++ Sbjct: 361 LLEKR 365 >gi|331655665|ref|ZP_08356657.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli M718] gi|331046766|gb|EGI18851.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli M718] Length = 366 Score = 463 bits (1192), Expect = e-128, Method: Composition-based stats. Identities = 245/361 (67%), Positives = 290/361 (80%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L +QYE QLAEKV RL+ MM F ++FRS HYRMRAEF IWHDGDDLYHI+FD Sbjct: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTK R+R+D F S LIN LM M+A +R P+LR KLFQIDYLT+ S+QA+V+L+YH Sbjct: 66 QQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + LDD WR+ A LRDAL A+ + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E Sbjct: 126 KKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIALDQDYIDERLPVAGKEMIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+ MLEW L TKG +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAANH++NV+I+RM+++EFTQAM REFNRL+ ID+ SY+ +TIFVDPPRSGL Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D T MVQAYP ILYISCNP++LC++L LS TH +ERLALFDQFPYT HMECGVLL Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTA 365 Query: 365 K 365 K Sbjct: 366 K 366 >gi|295095109|emb|CBK84199.1| tRNA (uracil-5-)-methyltransferase [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 366 Score = 463 bits (1192), Expect = e-128, Method: Composition-based stats. Identities = 244/359 (67%), Positives = 290/359 (80%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L +QY+ QLAEKV RL+ MM F P ++FRS HYRMRAEF IWHDGDDLYHI+FD Sbjct: 6 LPTEQYDAQLAEKVVRLQSMMTPFNAPVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTK R+R+D F S LIN LM M+ +R P+LR KLFQIDYLT+QS+QAIV+L+YH Sbjct: 66 QQTKSRIRVDSFPAASELINQLMTLMIDGVRNNPVLRNKLFQIDYLTTQSNQAIVSLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + L D WRE A LRDAL A+ + LIGRA KTKI LD+DY+DERL VAG+ ++YRQ+E Sbjct: 126 KALTDEWREQAEALRDALRAQNINVHLIGRATKTKIMLDQDYIDERLPVAGKEMVYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +NV MLEW L AT+G +GDLLELYCGNGNFSL LAR+F+RVLA EIAKPSV Sbjct: 186 NSFTQPNAAMNVQMLEWALKATEGSKGDLLELYCGNGNFSLALARNFERVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAANH++NV+I+RM+++EFTQAM REFNRL+ ID+ SY+ +TIFVDPPRSGL Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363 D T MVQAYP ILYISCNP++LC++L LS TH +ERLALFDQFPYT HMECGVLL Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLT 364 >gi|332998394|gb|EGK17992.1| tRNA (uracil-5-)-methyltransferase [Shigella flexneri K-272] gi|333014087|gb|EGK33444.1| tRNA (uracil-5-)-methyltransferase [Shigella flexneri K-227] Length = 366 Score = 463 bits (1192), Expect = e-128, Method: Composition-based stats. Identities = 247/361 (68%), Positives = 291/361 (80%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L +QYE QLAEKV RL+ MM F ++FRS HYRMRAEF IWHDGDDLYHI+FD Sbjct: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTK R+R+D F S LIN LM M+A +R P+LR KLFQIDYLT+ S+QA+V+L+YH Sbjct: 66 QQTKNRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + LDD WR+ A LRDAL A+ + LIGRA KTKI LD+DY+DERL VAG+ +IYRQIE Sbjct: 126 KKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIALDQDYIDERLPVAGKEMIYRQIE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+ MLEW L TKG +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAANH++NV+I+RM+++EFTQAM REFNRL+ ID+ SY+F+TIFVDPPRSGL Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQFETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D T MVQAYP ILYISCNP++LC++L LS TH +ERLALFDQFPYT HMECGVLL Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTA 365 Query: 365 K 365 K Sbjct: 366 K 366 >gi|91213517|ref|YP_543503.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli UTI89] gi|110644309|ref|YP_672039.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli 536] gi|117626238|ref|YP_859561.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli APEC O1] gi|191172684|ref|ZP_03034222.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli F11] gi|218561040|ref|YP_002393953.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli S88] gi|227885284|ref|ZP_04003089.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli 83972] gi|237703006|ref|ZP_04533487.1| tRNA (uracil-5-)-methyltransferase [Escherichia sp. 3_2_53FAA] gi|300975975|ref|ZP_07173247.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 45-1] gi|331660529|ref|ZP_08361463.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli TA206] gi|122421621|sp|Q1R3U2|TRMA_ECOUT RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|123343349|sp|Q0TA91|TRMA_ECOL5 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|134035058|sp|A1AIE7|TRMA_ECOK1 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|226705972|sp|B7MIA5|TRMA_ECO45 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|91075091|gb|ABE09972.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli UTI89] gi|110345901|gb|ABG72138.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli 536] gi|115515362|gb|ABJ03437.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli APEC O1] gi|190906988|gb|EDV66589.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli F11] gi|218367809|emb|CAR05603.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli S88] gi|222035685|emb|CAP78430.1| hypothetical protein LF82_2304 [Escherichia coli LF82] gi|226902943|gb|EEH89202.1| tRNA (uracil-5-)-methyltransferase [Escherichia sp. 3_2_53FAA] gi|227837736|gb|EEJ48202.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli 83972] gi|294493983|gb|ADE92739.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli IHE3034] gi|300410165|gb|EFJ93703.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 45-1] gi|307556117|gb|ADN48892.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli ABU 83972] gi|307629046|gb|ADN73350.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli UM146] gi|312948548|gb|ADR29375.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O83:H1 str. NRG 857C] gi|315289657|gb|EFU49050.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 110-3] gi|315292667|gb|EFU52019.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 153-1] gi|315298484|gb|EFU57739.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 16-3] gi|320196760|gb|EFW71382.1| tRNA uracil-5--methyltransferase [Escherichia coli WV_060327] gi|323949463|gb|EGB45352.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli H252] gi|323954256|gb|EGB50041.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli H263] gi|324012462|gb|EGB81681.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 60-1] gi|331052478|gb|EGI24515.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli TA206] Length = 366 Score = 463 bits (1191), Expect = e-128, Method: Composition-based stats. Identities = 244/361 (67%), Positives = 290/361 (80%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L +QYE QLAEKV RL+ MM F ++FRS HYRMRAEF IWHDGDDLYHI+FD Sbjct: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTK R+R+D F S LIN LM M+A +R P+LR KLFQIDYLT+ S+QA+V+L+YH Sbjct: 66 QQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPILRHKLFQIDYLTTLSNQAVVSLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + LDD WR+ A LRDAL A+ + LIGRA KTKI LD+DY+DERL +AG+ +IYRQ+E Sbjct: 126 KKLDDEWRQQAEALRDALRAQNLNVHLIGRATKTKIALDQDYIDERLPIAGKEMIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+ MLEW L TKG +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAANH++NV+I+RM+++EFTQAM REFNRL+ ID+ SY+ +TIFVDPPRSGL Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D T MVQAYP ILYISCNP++LC++L LS TH +ERLALFDQFPYT HMECGVLL Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTA 365 Query: 365 K 365 K Sbjct: 366 K 366 >gi|24115259|ref|NP_709769.1| tRNA (uracil-5-)-methyltransferase [Shigella flexneri 2a str. 301] gi|30064744|ref|NP_838915.1| tRNA (uracil-5-)-methyltransferase [Shigella flexneri 2a str. 2457T] gi|82546316|ref|YP_410263.1| tRNA (uracil-5-)-methyltransferase [Shigella boydii Sb227] gi|50401541|sp|Q820Z9|TRMA_SHIFL RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|123558094|sp|Q31U23|TRMA_SHIBS RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|24054550|gb|AAN45476.1| tRNA (uracil-5-)-methyltransferase [Shigella flexneri 2a str. 301] gi|30043004|gb|AAP18726.1| tRNA (uracil-5-)-methyltransferase [Shigella flexneri 2a str. 2457T] gi|81247727|gb|ABB68435.1| tRNA (uracil-5-)-methyltransferase [Shigella boydii Sb227] gi|281603359|gb|ADA76343.1| tRNA (uracil-5-)-methyltransferase [Shigella flexneri 2002017] gi|313648863|gb|EFS13302.1| tRNA (uracil-5-)-methyltransferase [Shigella flexneri 2a str. 2457T] gi|332751536|gb|EGJ81935.1| tRNA (uracil-5-)-methyltransferase [Shigella flexneri 4343-70] gi|332751807|gb|EGJ82204.1| tRNA (uracil-5-)-methyltransferase [Shigella flexneri K-671] gi|332752553|gb|EGJ82939.1| tRNA (uracil-5-)-methyltransferase [Shigella flexneri 2747-71] gi|332764486|gb|EGJ94718.1| tRNA (uracil-5-)-methyltransferase [Shigella flexneri 2930-71] gi|332997951|gb|EGK17557.1| tRNA (uracil-5-)-methyltransferase [Shigella flexneri VA-6] gi|333014014|gb|EGK33374.1| tRNA (uracil-5-)-methyltransferase [Shigella flexneri K-304] Length = 366 Score = 463 bits (1191), Expect = e-128, Method: Composition-based stats. Identities = 246/361 (68%), Positives = 291/361 (80%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L +QYE QLAEKV RL+ MM F ++FRS HYRMRAEF IWHDGDDLYHI+FD Sbjct: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTK R+R+D F S LIN LM M+A +R P+LR KLFQIDYLT+ S+QA+V+L+YH Sbjct: 66 QQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + LDD WR+ A LRDAL A+ + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E Sbjct: 126 KKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIALDQDYIDERLPVAGKEMIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+ MLEW L TKG +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAANH++NV+I+RM+++EFTQAM REFNRL+ ID+ SY+F+TIFVDPPRSGL Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQFETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D T MVQAYP ILYISCNP++LC++L LS TH +ERLALFDQFPYT HMECGVLL Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTA 365 Query: 365 K 365 K Sbjct: 366 K 366 >gi|301023751|ref|ZP_07187490.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 69-1] gi|300396895|gb|EFJ80433.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 69-1] Length = 366 Score = 463 bits (1191), Expect = e-128, Method: Composition-based stats. Identities = 245/361 (67%), Positives = 290/361 (80%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L +QYE QLAEKV RL+ MM F ++FRS HYRMRAEF IWHDGDDLYHI+FD Sbjct: 6 LPTEQYEAQLAEKVVRLQSMMAPFSNLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTK R+R+D F S LIN LM M+A +R P+LR KLFQIDYLT+ S+QA+V+L+YH Sbjct: 66 QQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + LDD WR+ A LRDAL A+ + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E Sbjct: 126 KKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIALDQDYIDERLPVAGKEMIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+ MLEW L TKG +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAANH++NV+I+RM+++EFTQAM REFNRL+ ID+ SY+ +TIFVDPPRSGL Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D T MVQAYP ILYISCNP++LC++L LS TH +ERLALFDQFPYT HMECGVLL Sbjct: 306 DGETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTA 365 Query: 365 K 365 K Sbjct: 366 K 366 >gi|323974255|gb|EGB69385.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli TW10509] Length = 366 Score = 463 bits (1191), Expect = e-128, Method: Composition-based stats. Identities = 245/361 (67%), Positives = 290/361 (80%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L +QYE QLAEKV RL+ MM F ++FRS HYRMRAEF IWHDGDDLYHI+FD Sbjct: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTK R+R+D F S LIN LM M+A +R P+LR KLFQIDYLT+ S+QA+V+L+YH Sbjct: 66 QQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + LDD WR+ A LRDAL A+ + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E Sbjct: 126 KKLDDEWRQQAEALRDALRAQNLNVHLIGRATKTKIALDQDYIDERLPVAGKEMIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+ MLEW L TKG +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAANH++NV+I+RM+++EFTQAM REFNRL+ ID+ SY+ +TIFVDPPRSGL Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D T MVQAYP ILYISCNP++LC++L LS TH +ERLALFDQFPYT HMECGVLL Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTA 365 Query: 365 K 365 K Sbjct: 366 K 366 >gi|238921674|ref|YP_002935189.1| tRNA (uracil-5-)-methyltransferase [Edwardsiella ictaluri 93-146] gi|259547825|sp|C5BC48|TRMA_EDWI9 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|238871243|gb|ACR70954.1| tRNA (uracil-5-)-methyltransferase, putative [Edwardsiella ictaluri 93-146] Length = 366 Score = 462 bits (1190), Expect = e-128, Method: Composition-based stats. Identities = 240/361 (66%), Positives = 287/361 (79%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L + Y+ QL+EK+ RL QMM F P +Q FRS HYRMRAEF IWHDGDDLYHIMFD Sbjct: 6 LPTEHYDDQLSEKIHRLEQMMQPFGAPAVQPFRSPVSHYRMRAEFRIWHDGDDLYHIMFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 Q+K+R+R+D F S LIN LM ++ +R P LR KLFQIDYL+++S Q IV+L+YH Sbjct: 66 PQSKQRIRVDQFPAASELINRLMPLLLDALRPNPTLRHKLFQIDYLSTRSGQIIVSLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 R LDDAW++ A LRDAL + + IQLIGRA+KTKICLD+D+VDE L VAGR +IYRQ+E Sbjct: 126 RTLDDAWKQAAEALRDALRGQGFAIQLIGRASKTKICLDQDWVDEVLPVAGRQMIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA IN+ MLEW L AT+G +GDLLELYCGNGNFSL LA +F +VLA EIAKPSV Sbjct: 186 NSFTQPNAAINIQMLEWALDATRGAEGDLLELYCGNGNFSLALAHNFRQVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAAN +NNV+I+RMS++EFTQAM+ R FNRL+ ID+HSY TIFVDPPRSGL Sbjct: 246 AAAQYNIAANQINNVQIIRMSAEEFTQAMQGVRAFNRLQGIDLHSYECNTIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D T+GMVQ YP+ILYISCNP +LC +L L+ +H I RLALFDQFPYT HMECGVLL R Sbjct: 306 DTETLGMVQGYPNILYISCNPLTLCDNLHTLNQSHRITRLALFDQFPYTHHMECGVLLER 365 Query: 365 K 365 + Sbjct: 366 R 366 >gi|296105348|ref|YP_003615494.1| tRNA (uracil-5-)-methyltransferase [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295059807|gb|ADF64545.1| tRNA (uracil-5-)-methyltransferase [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 366 Score = 462 bits (1190), Expect = e-128, Method: Composition-based stats. Identities = 242/359 (67%), Positives = 291/359 (81%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L +QY+ QLAEKV RL+ MM F P ++FRS HYRMRAEF IWHDGDDLYHI+FD Sbjct: 6 LPTEQYDAQLAEKVVRLQSMMTPFNAPVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTK R+R++ F S LIN LM M+ +R P+LR KLFQIDYLT+QS+QAIV+L+YH Sbjct: 66 QQTKSRIRVNSFPAASELINQLMTLMIDGVRNNPVLRHKLFQIDYLTTQSNQAIVSLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + L+D WRE A LRDAL A+ + LIGRA KTKI LD+DY+DERL+VAG+ ++YRQ+E Sbjct: 126 KALNDEWREQAEALRDALRAQNINVHLIGRATKTKIMLDQDYIDERLSVAGKEMVYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +NV MLEW L AT+G +GDLLELYCGNGNFSL LAR+F+RVLA EIAKPSV Sbjct: 186 NSFTQPNAAMNVQMLEWALKATEGSKGDLLELYCGNGNFSLALARNFERVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAANH++NV+I+RM+++EFTQAM REFNRL+ ID+ Y+ +TIFVDPPRSGL Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLEGIDLKGYQCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363 D T MVQAYP ILYISCNP++LC++L LS TH +ERLALFDQFPYT HMECGVLL Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLT 364 >gi|15804563|ref|NP_290604.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O157:H7 EDL933] gi|15834150|ref|NP_312923.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O157:H7 str. Sakai] gi|168761641|ref|ZP_02786648.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O157:H7 str. EC4501] gi|168786833|ref|ZP_02811840.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O157:H7 str. EC869] gi|168799442|ref|ZP_02824449.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O157:H7 str. EC508] gi|217326606|ref|ZP_03442690.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O157:H7 str. TW14588] gi|261226409|ref|ZP_05940690.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O157:H7 str. FRIK2000] gi|261256809|ref|ZP_05949342.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O157:H7 str. FRIK966] gi|291285387|ref|YP_003502205.1| tRNA (uracil-5-)-methyltransferase (tRNA(M-5-U54)- methyltransferase) [Escherichia coli O55:H7 str. CB9615] gi|293417475|ref|ZP_06660099.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli B185] gi|20178144|sp|Q8X723|TRMA_ECO57 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|12518892|gb|AAG59169.1|AE005628_5 tRNA (uracil-5-)-methyltransferase [Escherichia coli O157:H7 str. EDL933] gi|13364372|dbj|BAB38319.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O157:H7 str. Sakai] gi|189367875|gb|EDU86291.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O157:H7 str. EC4501] gi|189373235|gb|EDU91651.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O157:H7 str. EC869] gi|189378014|gb|EDU96430.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O157:H7 str. EC508] gi|209751938|gb|ACI74276.1| outer membrane vitamin B12 receptor protein BtuB [Escherichia coli] gi|209751940|gb|ACI74277.1| outer membrane vitamin B12 receptor protein BtuB [Escherichia coli] gi|209751942|gb|ACI74278.1| outer membrane vitamin B12 receptor protein BtuB [Escherichia coli] gi|209751944|gb|ACI74279.1| outer membrane vitamin B12 receptor protein BtuB [Escherichia coli] gi|217322827|gb|EEC31251.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O157:H7 str. TW14588] gi|290765260|gb|ADD59221.1| tRNA (uracil-5-)-methyltransferase (tRNA(M-5-U54)- methyltransferase) [Escherichia coli O55:H7 str. CB9615] gi|291430995|gb|EFF03991.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli B185] gi|320190931|gb|EFW65581.1| tRNA uracil-5--methyltransferase [Escherichia coli O157:H7 str. EC1212] gi|320639141|gb|EFX08777.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O157:H7 str. G5101] gi|320644533|gb|EFX13594.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O157:H- str. 493-89] gi|320649857|gb|EFX18372.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O157:H- str. H 2687] gi|320665949|gb|EFX32975.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O157:H7 str. LSU-61] gi|326338015|gb|EGD61845.1| tRNA uracil-5-methyltransferase [Escherichia coli O157:H7 str. 1044] gi|326342690|gb|EGD66463.1| tRNA uracil-5--methyltransferase [Escherichia coli O157:H7 str. 1125] Length = 366 Score = 462 bits (1190), Expect = e-128, Method: Composition-based stats. Identities = 245/361 (67%), Positives = 290/361 (80%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L +QYE QLAEKV RL+ MM F ++FRS HYRMRAEF IWHDGDDLYHI+FD Sbjct: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTK R+R+D F S LIN LM M+A +R P+LR KLFQIDYLT+ S+QA+V+L+YH Sbjct: 66 QQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + LDD WR+ A LRDAL A+ + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E Sbjct: 126 KKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIALDQDYIDERLPVAGKEMIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+ MLEW L TKG +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAANH++NV+I+RM+++EFTQAM REFNRL+ ID+ SY+ +TIFVDPPRSGL Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D T MVQAYP ILYISCNP++LC++L LS TH +ERLALFDQFPYT HMECGVLL Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTA 365 Query: 365 K 365 K Sbjct: 366 K 366 >gi|323964325|gb|EGB59808.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli M863] gi|327250611|gb|EGE62319.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli STEC_7v] Length = 366 Score = 462 bits (1190), Expect = e-128, Method: Composition-based stats. Identities = 244/361 (67%), Positives = 289/361 (80%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L +QYE QLAEKV RL+ MM F ++FRS HYRMRAEF IWHDGDDLYHI+FD Sbjct: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTK R+R+D F S LIN LM M+ +R P+LR KLFQIDYLT+ S+QA+V+L+YH Sbjct: 66 QQTKSRIRVDSFPAASELINQLMTAMITGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + LDD WR+ A LRDAL A+ + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E Sbjct: 126 KKLDDEWRQQAEALRDALRAQNLNVHLIGRATKTKIALDQDYIDERLPVAGKEMIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+ MLEW L TKG +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAANH++NV+I+RM+++EFTQAM REFNRL+ ID+ SY+ +TIFVDPPRSGL Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D T MVQAYP ILYISCNP++LC++L LS TH +ERLALFDQFPYT HMECGVLL Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTA 365 Query: 365 K 365 K Sbjct: 366 K 366 >gi|281181038|dbj|BAI57368.1| tRNA (uracil-5)-methyltransferase [Escherichia coli SE15] Length = 366 Score = 462 bits (1189), Expect = e-128, Method: Composition-based stats. Identities = 243/361 (67%), Positives = 289/361 (80%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L +QYE QLAEKV RL+ MM F ++FRS HYRMRAEF IWHDGDDLYHI+FD Sbjct: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTK R+R+D F S LIN LM M+A +R P+LR KLFQIDYLT+ S+QA+V+L+YH Sbjct: 66 QQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPILRHKLFQIDYLTTLSNQAVVSLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + LDD W + A LRDAL A+ + LIGRA KTKI LD+DY+DERL +AG+ +IYRQ+E Sbjct: 126 KKLDDEWCQQAEALRDALRAQNLNVHLIGRATKTKIALDQDYIDERLPIAGKEMIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+ MLEW L TKG +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAANH++NV+I+RM+++EFTQAM REFNRL+ ID+ SY+ +TIFVDPPRSGL Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D T MVQAYP ILYISCNP++LC++L LS TH +ERLALFDQFPYT HMECGVLL Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTA 365 Query: 365 K 365 K Sbjct: 366 K 366 >gi|301645162|ref|ZP_07245119.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 146-1] gi|307140664|ref|ZP_07500020.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli H736] gi|331644703|ref|ZP_08345822.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli H736] gi|301076541|gb|EFK91347.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 146-1] gi|315617762|gb|EFU98367.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli 3431] gi|331036165|gb|EGI08401.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli H736] Length = 366 Score = 462 bits (1189), Expect = e-128, Method: Composition-based stats. Identities = 246/361 (68%), Positives = 290/361 (80%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L +QYE QLAEKV RL+ MM F ++FRS HYRMRAEF IWHDGDDLYHI+FD Sbjct: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTK R+R+D F S LIN LM M+A +R P+LR KLFQIDYLT+ S+QA+V+L+YH Sbjct: 66 QQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + LDD WR+ A LRDAL A+ + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E Sbjct: 126 KKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+ MLEW L TKG +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAANH++NV+I+RMS++EFTQAM REFNRL+ ID+ SY+ +TIFVDPPRSGL Sbjct: 246 AAAQYNIAANHIDNVQIIRMSAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D T MVQAYP ILYISCNP++LC++L LS TH +ERLALFDQFPYT HMECGVLL Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTA 365 Query: 365 K 365 K Sbjct: 366 K 366 >gi|331685711|ref|ZP_08386294.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli H299] gi|331077182|gb|EGI48397.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli H299] Length = 366 Score = 462 bits (1189), Expect = e-128, Method: Composition-based stats. Identities = 245/361 (67%), Positives = 290/361 (80%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L +QYE QLAEKV RL+ MM F ++FRS HYRMRAEF IWHDGDDLYHI+FD Sbjct: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPASHYRMRAEFRIWHDGDDLYHIIFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTK R+R+D F S LIN LM M+A +R P+LR KLFQIDYLT+ S+QA+V+L+YH Sbjct: 66 QQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPILRHKLFQIDYLTTLSNQAVVSLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + LDD WR+ A LRDAL A+ + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E Sbjct: 126 KKLDDEWRQQAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+ MLEW L TKG +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAANH++NV+I+RM+++EFTQAM REFNRL+ ID+ SY+ +TIFVDPPRSGL Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D T MVQAYP ILYISCNP++LC++L LS TH +ERLALFDQFPYT HMECGVLL Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTA 365 Query: 365 K 365 K Sbjct: 366 K 366 >gi|301048610|ref|ZP_07195623.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 185-1] gi|300299530|gb|EFJ55915.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 185-1] Length = 366 Score = 462 bits (1189), Expect = e-128, Method: Composition-based stats. Identities = 243/361 (67%), Positives = 289/361 (80%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L +QYE QLAEKV RL+ MM F ++FRS HYRMRAEF IWHDGDDLYHI+FD Sbjct: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTK R+R+D F S LIN LM M+A +R P+LR KLFQIDYLT+ S+QA+V+L+YH Sbjct: 66 QQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPILRHKLFQIDYLTTLSNQAVVSLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + LDD WR+ A LRDAL A+ + LIGRA KTKI LD+DY+DERL +AG+ +IYRQ+E Sbjct: 126 KKLDDEWRQQAEALRDALRAQNLNVHLIGRATKTKIALDQDYIDERLPIAGKEMIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+ MLEW L TKG +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAANH++NV+I+RM+++EFTQAM REFNRL+ ID+ SY+ + IFVDPPRSGL Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCEAIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D T MVQAYP ILYISCNP++LC++L LS TH +ERLALFDQFPYT HMECGVLL Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTA 365 Query: 365 K 365 K Sbjct: 366 K 366 >gi|146313653|ref|YP_001178727.1| tRNA (uracil-5-)-methyltransferase [Enterobacter sp. 638] gi|172046005|sp|A4WG46|TRMA_ENT38 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|145320529|gb|ABP62676.1| tRNA (uracil-5-)-methyltransferase [Enterobacter sp. 638] Length = 366 Score = 462 bits (1189), Expect = e-128, Method: Composition-based stats. Identities = 244/361 (67%), Positives = 292/361 (80%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L +QY+ QLAEKV RL+ MM F P ++FRS HYRMRAEF IWHDGDDLYHI+FD Sbjct: 6 LPTEQYDAQLAEKVVRLQSMMTPFAAPVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTK R+R++ F S LIN LM M+ +R P LR KLFQIDYLT+QS+QAIV+++YH Sbjct: 66 QQTKSRIRVNSFPAASELINQLMTLMIEGVRNNPQLRHKLFQIDYLTTQSNQAIVSMLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + L D WR+ A LRDAL A+ + LIGRA KTKI LD+DYVDERL VAG+ +IYRQ+E Sbjct: 126 KKLGDEWRKEAEVLRDALRAQNINVHLIGRATKTKIMLDQDYVDERLPVAGKEMIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +NV MLEW L+AT+G +GDLLELYCGNGNFSL LAR+F+RVLA EIAKPSV Sbjct: 186 NSFTQPNAAMNVQMLEWALSATEGSKGDLLELYCGNGNFSLALARNFERVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 +A+YNIAANH++NV+I+RM+++EFTQAM EREFNRL+ ID+ SY+ +TIFVDPPRSGL Sbjct: 246 ASAQYNIAANHIDNVQIIRMAAEEFTQAMNGEREFNRLQGIDLKSYQCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D T MVQAYP ILYISCNP++LC++L LS TH +ERLALFDQFPYT HMECGVLL Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTL 365 Query: 365 K 365 K Sbjct: 366 K 366 >gi|317050044|ref|YP_004117692.1| tRNA (uracil-5-)-methyltransferase [Pantoea sp. At-9b] gi|316951661|gb|ADU71136.1| tRNA (uracil-5-)-methyltransferase [Pantoea sp. At-9b] Length = 367 Score = 462 bits (1189), Expect = e-128, Method: Composition-based stats. Identities = 237/361 (65%), Positives = 288/361 (79%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L I+QY+ QLAEKV RL+ MM F P +++FRS HYRMRAEF IWHDGDDLYHI+FD Sbjct: 6 LPIEQYDAQLAEKVSRLQAMMAPFAAPEVEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTK+R+R+D F S LIN LM +M+ IR LR KLFQIDYL++ S+Q +++L+YH Sbjct: 66 QQTKQRIRVDQFPAASALINQLMPKMINAIRDNRALRHKLFQIDYLSTLSNQIVISLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 R L++ W+ A LRDAL A + +QLIGRA KTKICLDRDY+DERL VAG+ +IYRQ+E Sbjct: 126 RKLEEEWQLAASALRDALRAEGFDVQLIGRATKTKICLDRDYIDERLPVAGKEMIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+ MLEW L T+ +GDLLELYCGNGNFSL LAR+F RVLA EIAKPSV Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTQNARGDLLELYCGNGNFSLALARNFRRVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA++NIAANH++NV+I+RM+++EFTQAM R FNRL+ ID+ SY+ +TIFVDPPRSGL Sbjct: 246 AAAQFNIAANHIDNVQIIRMAAEEFTQAMNGVRSFNRLEGIDLQSYQCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D TV MVQAYP ILYISCNP +LC +L+ L+ TH + RLALFDQFPYT HME GVLL R Sbjct: 306 DAETVKMVQAYPRILYISCNPQTLCDNLATLAETHEVARLALFDQFPYTHHMESGVLLTR 365 Query: 365 K 365 K Sbjct: 366 K 366 >gi|251787782|ref|YP_003002503.1| tRNA (uracil-5-)-methyltransferase [Dickeya zeae Ech1591] gi|262827675|sp|C6CG41|TRMA_DICZE RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|247536403|gb|ACT05024.1| tRNA (uracil-5-)-methyltransferase [Dickeya zeae Ech1591] Length = 367 Score = 462 bits (1188), Expect = e-128, Method: Composition-based stats. Identities = 237/361 (65%), Positives = 284/361 (78%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L IDQY+ QL EK RL MM F P +FRS HYRMRAEF IWHDGDDLYHIMFD Sbjct: 6 LPIDQYDAQLEEKTGRLGAMMAPFDAPAPAVFRSPVSHYRMRAEFRIWHDGDDLYHIMFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTK+R+R+D F S LIN LM ++ +R EP+LR KLFQ+DYL++ S + V+L+YH Sbjct: 66 QQTKQRIRVDQFPAASELINRLMPVLLNALRAEPVLRRKLFQLDYLSTLSGEIAVSLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + LDD WR+ A L D L A+ + +QLIGRA KTKICLDRDYVDE L VAGR +IYRQ+E Sbjct: 126 KALDDEWRQRARELCDELRAQGFALQLIGRATKTKICLDRDYVDECLPVAGRQMIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+ MLEW L+ T+G GDLLELYCGNGNFSL LAR+F+RVLA EIAKPSV Sbjct: 186 NSFTQPNAMMNIQMLEWALSVTQGSTGDLLELYCGNGNFSLALARNFERVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAAN ++NV+I+RM+++EFTQAM R+FNRL+ ID+ YR +TIFVDPPRSGL Sbjct: 246 AAAQYNIAANQIDNVQIIRMAAEEFTQAMNGVRQFNRLQGIDLAGYRCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 DD T +VQAYP ILYISCNP++LC +L LS TH I +LALFDQFPYT HMECGVLL + Sbjct: 306 DDGTAKLVQAYPRILYISCNPETLCANLETLSQTHRISQLALFDQFPYTHHMECGVLLEK 365 Query: 365 K 365 + Sbjct: 366 R 366 >gi|320660831|gb|EFX28281.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O55:H7 str. USDA 5905] Length = 366 Score = 462 bits (1188), Expect = e-128, Method: Composition-based stats. Identities = 245/361 (67%), Positives = 290/361 (80%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L +QYE QLAEKV RL+ MM F ++FRS HYRMRAEF IWHDGDDLYHI+FD Sbjct: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTK R+R+D F S LIN LM M+A +R P+LR KLFQIDYLT+ S+QA+V+L+YH Sbjct: 66 QQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRYKLFQIDYLTTLSNQAVVSLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + LDD WR+ A LRDAL A+ + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E Sbjct: 126 KKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIALDQDYIDERLPVAGKEMIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+ MLEW L TKG +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAANH++NV+I+RM+++EFTQAM REFNRL+ ID+ SY+ +TIFVDPPRSGL Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D T MVQAYP ILYISCNP++LC++L LS TH +ERLALFDQFPYT HMECGVLL Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTA 365 Query: 365 K 365 K Sbjct: 366 K 366 >gi|261819553|ref|YP_003257659.1| tRNA (uracil-5-)-methyltransferase [Pectobacterium wasabiae WPP163] gi|261603566|gb|ACX86052.1| tRNA (uracil-5-)-methyltransferase [Pectobacterium wasabiae WPP163] Length = 367 Score = 462 bits (1188), Expect = e-128, Method: Composition-based stats. Identities = 236/361 (65%), Positives = 288/361 (79%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L I+ Y+ QLAEK +RLR MM F P +FRS HYRMRAEF IWHDGD+LYHIMFD Sbjct: 6 LPIEDYDDQLAEKTERLRGMMAPFNAPEPVVFRSPVSHYRMRAEFRIWHDGDELYHIMFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTK+R+R+D F S LIN LM +++A I+ + +LR KLFQIDYL++ S + IV+L+YH Sbjct: 66 QQTKQRIRVDKFPAASELINRLMPKLLAAIQPDSVLRRKLFQIDYLSTLSGEVIVSLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 R L++ W+E A LRD+L A+ + +QLIGRA KTKICLDRDYVDE L VAGR +IYRQ+E Sbjct: 126 RPLNEEWQEHACALRDSLTAQGFNLQLIGRATKTKICLDRDYVDECLPVAGRNMIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+ MLEW L AT +GDLLELYCGNGNFSL LAR+F+RVLA EIAKPSV Sbjct: 186 NSFTQPNAAVNIKMLEWALDATASSKGDLLELYCGNGNFSLALARNFERVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNI AN + NV+I+RM+++EFTQAM+ R+F RL+ ID+ SY+ +TIFVDPPRSGL Sbjct: 246 AAAQYNITANQIENVQIIRMAAEEFTQAMQGVRQFKRLQGIDLTSYQCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 DD TV +VQAYP ILYISCNP++L +L LS TH I RLALFDQFPYT HMECGVLL + Sbjct: 306 DDETVKLVQAYPRILYISCNPETLSNNLQTLSETHDIRRLALFDQFPYTHHMECGVLLEK 365 Query: 365 K 365 + Sbjct: 366 R 366 >gi|331665621|ref|ZP_08366519.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli TA143] gi|331057306|gb|EGI29296.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli TA143] Length = 366 Score = 462 bits (1188), Expect = e-128, Method: Composition-based stats. Identities = 245/361 (67%), Positives = 290/361 (80%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L +QYE QLAEKV RL+ MM F ++FRS HYRMRAEF IWHDGDDLYHI+FD Sbjct: 6 LPTEQYEAQLAEKVVRLQSMMAPFSNLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTK R+R+D F S LIN LM M+A +R P+LR KLFQIDYLT+ S+QA+V+L+YH Sbjct: 66 QQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + LDD WR+ A LRDAL A+ + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E Sbjct: 126 KKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+ MLEW L TKG +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAANH++NV+I+RM+++EFTQAM REFNRL+ ID+ SY+ +TIFVDPPRSGL Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D T MVQAYP ILYISCNP++LC++L LS TH +ERLALFDQFPYT HMECGVLL Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTA 365 Query: 365 K 365 K Sbjct: 366 K 366 >gi|110807824|ref|YP_691344.1| tRNA (uracil-5-)-methyltransferase [Shigella flexneri 5 str. 8401] gi|123146465|sp|Q0SY26|TRMA_SHIF8 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|110617372|gb|ABF06039.1| tRNA (uracil-5-)-methyltransferase [Shigella flexneri 5 str. 8401] Length = 366 Score = 462 bits (1188), Expect = e-128, Method: Composition-based stats. Identities = 245/361 (67%), Positives = 290/361 (80%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L +QYE QLAEKV RL+ MM F ++FRS HYRMRAEF IWHDGDDLYHI+FD Sbjct: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTK R+R+D F S LIN LM M+A +R P+LR KLFQIDYLT+ S+QA+V+L+YH Sbjct: 66 QQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + LDD WR+ A LRDAL A+ + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E Sbjct: 126 KKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIALDQDYIDERLPVAGKEMIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+ MLEW L TKG +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNI ANH++NV+I+RM+++EFTQAM REFNRL+ ID+ SY+F+TIFVDPPRSGL Sbjct: 246 AAAQYNITANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQFETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D T MVQAYP ILYISCNP++LC++L LS TH +ERLALFDQFPYT HMECGVLL Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTA 365 Query: 365 K 365 K Sbjct: 366 K 366 >gi|307314707|ref|ZP_07594304.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli W] gi|306905762|gb|EFN36288.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli W] gi|315063300|gb|ADT77627.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli W] gi|323380637|gb|ADX52905.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli KO11] Length = 366 Score = 461 bits (1187), Expect = e-128, Method: Composition-based stats. Identities = 244/361 (67%), Positives = 290/361 (80%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L +QYE QLAEKV RL+ MM F ++FRS HYRMRAEF IWHDGDDLYHI+FD Sbjct: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTK R+R+D F S LIN LM M+A +R P+LR KLFQIDYLT+ S+QA+V+L+YH Sbjct: 66 QQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + LDD WR+ A LRDAL A+ + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E Sbjct: 126 KKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+ MLEW L TKG +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAANH++NV+I+RM+++EFTQAM REFNRL+ ID+ SY+ +TIFVDPPRSGL Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D T MVQAYP ILYISCNP++LC++L LS TH +ERLALFDQFPYT H+ECGVLL Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHIECGVLLTA 365 Query: 365 K 365 K Sbjct: 366 K 366 >gi|188496220|ref|ZP_03003490.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli 53638] gi|188491419|gb|EDU66522.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli 53638] Length = 366 Score = 461 bits (1187), Expect = e-128, Method: Composition-based stats. Identities = 245/361 (67%), Positives = 290/361 (80%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L +QYE QLAEKV RL+ MM F ++FRS HYRMRAEF IWHDGDDLYHI+FD Sbjct: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTK R+R+D F S LIN LM M+A +R P+LR KLFQIDYLT+ S+QA+V+L+YH Sbjct: 66 QQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + LDD WR+ A LRDAL A+ + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E Sbjct: 126 KKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+ MLEW L TKG +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAANH++NV+I+RM+++EFTQAM REFNRL+ ID+ SY+ +TIFVDPPRSGL Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D T MVQAYP ILYISCNP++LC++L LS TH +ERLALFDQFPYT HMECGVLL Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTA 365 Query: 365 K 365 K Sbjct: 366 K 366 >gi|215489306|ref|YP_002331737.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O127:H6 str. E2348/69] gi|312965374|ref|ZP_07779607.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli 2362-75] gi|254789075|sp|B7UNU5|TRMA_ECO27 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|215267378|emb|CAS11829.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O127:H6 str. E2348/69] gi|312290048|gb|EFR17935.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli 2362-75] Length = 366 Score = 461 bits (1187), Expect = e-128, Method: Composition-based stats. Identities = 245/361 (67%), Positives = 290/361 (80%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L +QYE QLAEKV RL+ MM F ++FRS HYRMRAEF IWHDGDDLYHI+FD Sbjct: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTK R+R+D F S LIN LM M+A +R P+LR KLFQIDYLT+ S+QA+V+L+YH Sbjct: 66 QQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + LDD WR+ A LRDAL A+ + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E Sbjct: 126 KKLDDEWRQQAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+ MLEW L TKG +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAANH++NV+I+RM+++EFTQAM REFNRL+ ID+ SY+ +TIFVDPPRSGL Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D T MVQAYP ILYISCNP++LC++L LS TH +ERLALFDQFPYT HMECGVLL Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTA 365 Query: 365 K 365 K Sbjct: 366 K 366 >gi|26250742|ref|NP_756782.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli CFT073] gi|34222850|sp|Q8CXW3|TRMA_ECOL6 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|26111173|gb|AAN83356.1|AE016770_156 tRNA (Uracil-5-)-methyltransferase [Escherichia coli CFT073] Length = 366 Score = 461 bits (1187), Expect = e-128, Method: Composition-based stats. Identities = 243/361 (67%), Positives = 289/361 (80%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L +QYE QLAEKV RL+ MM F ++FRS HYRMRAEF IWHDGDDLYHI+FD Sbjct: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTK R+R+D F S LIN LM M+A +R P+LR KLFQIDYLT+ +QA+V+L+YH Sbjct: 66 QQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPILRHKLFQIDYLTTLRNQAVVSLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + LDD WR+ A LRDAL A+ + LIGRA KTKI LD+DY+DERL +AG+ +IYRQ+E Sbjct: 126 KKLDDEWRQQAEALRDALRAQNLNVHLIGRATKTKIALDQDYIDERLPIAGKEMIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+ MLEW L TKG +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAANH++NV+I+RM+++EFTQAM REFNRL+ ID+ SY+ +TIFVDPPRSGL Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D T MVQAYP ILYISCNP++LC++L LS TH +ERLALFDQFPYT HMECGVLL Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTA 365 Query: 365 K 365 K Sbjct: 366 K 366 >gi|331649822|ref|ZP_08350902.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli M605] gi|330908290|gb|EGH36809.1| tRNA (Uracil54-C5-)-methyltransferase [Escherichia coli AA86] gi|331041455|gb|EGI13605.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli M605] Length = 366 Score = 461 bits (1187), Expect = e-128, Method: Composition-based stats. Identities = 243/361 (67%), Positives = 289/361 (80%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L +QYE QLAEKV RL+ MM F ++FRS HYRMRAEF IWHDGDDLYHI+FD Sbjct: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTK R+R+D F S LIN LM M+A +R P+LR KLFQIDYLT+ S+QA+V+L+YH Sbjct: 66 QQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPILRHKLFQIDYLTTLSNQAVVSLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + LDD W + A LRDAL A+ + LIGRA KTKI LD+DY+DERL +AG+ +IYRQ+E Sbjct: 126 KKLDDDWCQQAEALRDALRAQNLNVHLIGRATKTKIALDQDYIDERLPIAGKEMIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+ MLEW L TKG +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAANH++NV+I+RM+++EFTQAM REFNRL+ ID+ SY+ +TIFVDPPRSGL Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D T MVQAYP ILYISCNP++LC++L LS TH +ERLALFDQFPYT HMECGVLL Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTA 365 Query: 365 K 365 K Sbjct: 366 K 366 >gi|283834733|ref|ZP_06354474.1| tRNA (uracil-5-)-methyltransferase [Citrobacter youngae ATCC 29220] gi|291069663|gb|EFE07772.1| tRNA (uracil-5-)-methyltransferase [Citrobacter youngae ATCC 29220] Length = 366 Score = 461 bits (1187), Expect = e-128, Method: Composition-based stats. Identities = 234/361 (64%), Positives = 287/361 (79%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L +QY+ QLAEKV RL+ +M F ++FRS HYRMRAEF +WHDGDDLYHIMFD Sbjct: 6 LPTEQYDAQLAEKVVRLQSLMTPFYAQAPEVFRSPVSHYRMRAEFRLWHDGDDLYHIMFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QTK R+R+D F S LIN LM M+ +R P+LR KLFQIDYLT+ SD+A+V+++YH Sbjct: 66 SQTKRRIRVDSFPAASELINTLMTAMIEGVRNNPVLRHKLFQIDYLTTLSDRAVVSMLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + LDD WR+ A LRDAL A+ + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E Sbjct: 126 KKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEIIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+ MLEW + T+G +GDLLELYCGNGNFSL LA++F+RVLA EIAKPSV Sbjct: 186 NSFTQPNAAMNIQMLEWAIDVTRGSKGDLLELYCGNGNFSLALAQNFNRVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAAN ++NV+I+RM+++EFTQAM REFNRL ID+ SY+ +TIFVDPPRSGL Sbjct: 246 AAAQYNIAANQIDNVQIIRMAAEEFTQAMNGVREFNRLLGIDLKSYQCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D T MVQAYP I+YISCNP++LC++L LS TH +ERLALFDQFPYT HMECGVLL + Sbjct: 306 DSETEKMVQAYPRIMYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTK 365 Query: 365 K 365 K Sbjct: 366 K 366 >gi|306813764|ref|ZP_07447940.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli NC101] gi|305852762|gb|EFM53209.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli NC101] gi|324006693|gb|EGB75912.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 57-2] Length = 366 Score = 461 bits (1187), Expect = e-128, Method: Composition-based stats. Identities = 245/361 (67%), Positives = 289/361 (80%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L +QYE QLAEKV RL+ MM F ++FRS HYRMRAEF IWHDGDDLYHI+FD Sbjct: 6 LPTEQYEAQLAEKVVRLQSMMAPFSNLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTK R+R+D F S LIN LM M+A +R P LR KLFQIDYLT+ S+QA+V+L+YH Sbjct: 66 QQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPFLRHKLFQIDYLTTLSNQAVVSLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + LDD WR+ A LRDAL A+ + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E Sbjct: 126 KKLDDGWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+ MLEW L TKG +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAANH++NV+I+RM+++EFTQAM REFNRL+ ID+ SY+ +TIFVDPPRSGL Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D T MVQAYP ILYISCNP++LC++L LS TH +ERLALFDQFPYT HMECGVLL Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTA 365 Query: 365 K 365 K Sbjct: 366 K 366 >gi|218692255|ref|YP_002400467.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli ED1a] gi|254789077|sp|B7MR93|TRMA_ECO81 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|218429819|emb|CAR10781.2| tRNA (uracil-5-)-methyltransferase [Escherichia coli ED1a] Length = 366 Score = 461 bits (1187), Expect = e-128, Method: Composition-based stats. Identities = 245/361 (67%), Positives = 289/361 (80%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L +QYE QLAEKV RL+ MM F ++FRS HYRMRAEF IWHDGDDLYHI+FD Sbjct: 6 LPTEQYEAQLAEKVVRLQSMMAPFSNLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTK R+R+D F S LIN LM M+A +R P LR KLFQIDYLT+ S+QA+V+L+YH Sbjct: 66 QQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPFLRHKLFQIDYLTTLSNQAVVSLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + LDD WR+ A LRDAL A+ + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E Sbjct: 126 KKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+ MLEW L TKG +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAANH++NV+I+RM+++EFTQAM REFNRL+ ID+ SY+ +TIFVDPPRSGL Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D T MVQAYP ILYISCNP++LC++L LS TH +ERLALFDQFPYT HMECGVLL Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTA 365 Query: 365 K 365 K Sbjct: 366 K 366 >gi|16131803|ref|NP_418400.1| tRNA m(5)U54 methyltransferase, SAM-dependen [Escherichia coli str. K-12 substr. MG1655] gi|89110065|ref|AP_003845.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli str. K-12 substr. W3110] gi|157155127|ref|YP_001465464.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli E24377A] gi|157163442|ref|YP_001460760.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli HS] gi|170022023|ref|YP_001726977.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli ATCC 8739] gi|170083434|ref|YP_001732754.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli str. K-12 substr. DH10B] gi|191169527|ref|ZP_03031257.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli B7A] gi|193064005|ref|ZP_03045091.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli E22] gi|193068008|ref|ZP_03048973.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli E110019] gi|194429393|ref|ZP_03061917.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli B171] gi|194433193|ref|ZP_03065474.1| tRNA (uracil-5-)-methyltransferase [Shigella dysenteriae 1012] gi|194438266|ref|ZP_03070357.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli 101-1] gi|209921451|ref|YP_002295535.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli SE11] gi|218556528|ref|YP_002389442.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli IAI1] gi|218697681|ref|YP_002405348.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli 55989] gi|238903030|ref|YP_002928826.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli BW2952] gi|253775396|ref|YP_003038227.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254039227|ref|ZP_04873277.1| tRNA (uracil-5-)-methyltransferase [Escherichia sp. 1_1_43] gi|254163915|ref|YP_003047023.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli B str. REL606] gi|256021670|ref|ZP_05435535.1| tRNA (uracil-5-)-methyltransferase [Shigella sp. D9] gi|256025996|ref|ZP_05439861.1| tRNA (uracil-5-)-methyltransferase [Escherichia sp. 4_1_40B] gi|260846774|ref|YP_003224552.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O103:H2 str. 12009] gi|300819387|ref|ZP_07099585.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 107-1] gi|300824362|ref|ZP_07104477.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 119-7] gi|300902586|ref|ZP_07120562.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 84-1] gi|300926199|ref|ZP_07142005.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 182-1] gi|300928748|ref|ZP_07144264.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 187-1] gi|300954725|ref|ZP_07167159.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 175-1] gi|301024174|ref|ZP_07187883.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 196-1] gi|301307107|ref|ZP_07213140.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 124-1] gi|301324909|ref|ZP_07218470.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 78-1] gi|309797136|ref|ZP_07691533.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 145-7] gi|312971741|ref|ZP_07785915.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli 1827-70] gi|331670823|ref|ZP_08371659.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli TA271] gi|331680089|ref|ZP_08380751.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli H591] gi|332282911|ref|ZP_08395324.1| tRNA (uracil-5-)-methyltransferase [Shigella sp. D9] gi|136247|sp|P23003|TRMA_ECOLI RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|171855253|sp|A7ZUI5|TRMA_ECO24 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|172044453|sp|A8A773|TRMA_ECOHS RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|189036039|sp|B1IVB3|TRMA_ECOLC RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|226705975|sp|B7M721|TRMA_ECO8A RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|226705976|sp|B1XBX6|TRMA_ECODH RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|226705978|sp|B6I5I3|TRMA_ECOSE RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|254789076|sp|B7LA67|TRMA_ECO55 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|259547823|sp|C5A0R4|TRMA_ECOBW RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|262827689|sp|C5WBK5|TRMA_ECOBB RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|262827695|sp|C6UJK3|TRMA_ECOBR RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|148051|gb|AAA24691.1| m-5-U54 transfer RNA methyltransferase [Escherichia coli] gi|396312|gb|AAC43071.1| tRNA (uracil-5)-methyltransferase [Escherichia coli str. K-12 substr. MG1655] gi|1790403|gb|AAC76947.1| tRNA m(5)U54 methyltransferase, SAM-dependen [Escherichia coli str. K-12 substr. MG1655] gi|85676096|dbj|BAE77346.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli str. K12 substr. W3110] gi|157069122|gb|ABV08377.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli HS] gi|157077157|gb|ABV16865.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli E24377A] gi|169756951|gb|ACA79650.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli ATCC 8739] gi|169891269|gb|ACB04976.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli str. K-12 substr. DH10B] gi|190900432|gb|EDV60251.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli B7A] gi|192929470|gb|EDV83078.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli E22] gi|192958628|gb|EDV89066.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli E110019] gi|194412540|gb|EDX28838.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli B171] gi|194418477|gb|EDX34565.1| tRNA (uracil-5-)-methyltransferase [Shigella dysenteriae 1012] gi|194422703|gb|EDX38699.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli 101-1] gi|209914710|dbj|BAG79784.1| tRNA (uracil-5)-methyltransferase [Escherichia coli SE11] gi|218354413|emb|CAV01205.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli 55989] gi|218363297|emb|CAR00946.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli IAI1] gi|226838663|gb|EEH70692.1| tRNA (uracil-5-)-methyltransferase [Escherichia sp. 1_1_43] gi|238863708|gb|ACR65706.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli BW2952] gi|242379501|emb|CAQ34316.1| tRNA m[5]U54 methyltransferase [Escherichia coli BL21(DE3)] gi|253326440|gb|ACT31042.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253975816|gb|ACT41487.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli B str. REL606] gi|253979973|gb|ACT45643.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli BL21(DE3)] gi|257761921|dbj|BAI33418.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O103:H2 str. 12009] gi|260451199|gb|ACX41621.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli DH1] gi|299880533|gb|EFI88744.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 196-1] gi|300318306|gb|EFJ68090.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 175-1] gi|300405346|gb|EFJ88884.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 84-1] gi|300417764|gb|EFK01075.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 182-1] gi|300463273|gb|EFK26766.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 187-1] gi|300523168|gb|EFK44237.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 119-7] gi|300528070|gb|EFK49132.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 107-1] gi|300837690|gb|EFK65450.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 124-1] gi|300848193|gb|EFK75953.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 78-1] gi|308119215|gb|EFO56477.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 145-7] gi|309704389|emb|CBJ03738.1| tRNA (uracil-5)-methyltransferase [Escherichia coli ETEC H10407] gi|310334118|gb|EFQ00323.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli 1827-70] gi|315138530|dbj|BAJ45689.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli DH1] gi|315253601|gb|EFU33569.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 85-1] gi|320180305|gb|EFW55237.1| tRNA uracil-5--methyltransferase [Shigella boydii ATCC 9905] gi|320201540|gb|EFW76118.1| tRNA uracil-5--methyltransferase [Escherichia coli EC4100B] gi|323161256|gb|EFZ47169.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli E128010] gi|323182070|gb|EFZ67480.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli 1357] gi|323934454|gb|EGB30867.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli E1520] gi|323939046|gb|EGB35264.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli E482] gi|323943618|gb|EGB39725.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli H120] gi|323959266|gb|EGB54927.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli H489] gi|323969717|gb|EGB65001.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli TA007] gi|324019674|gb|EGB88893.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 117-3] gi|324115514|gb|EGC09455.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli E1167] gi|331062078|gb|EGI34001.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli TA271] gi|331072415|gb|EGI43748.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli H591] gi|332083983|gb|EGI89192.1| tRNA (uracil-5-)-methyltransferase [Shigella boydii 5216-82] gi|332085302|gb|EGI90476.1| tRNA (uracil-5-)-methyltransferase [Shigella dysenteriae 155-74] gi|332105263|gb|EGJ08609.1| tRNA (uracil-5-)-methyltransferase [Shigella sp. D9] gi|332345962|gb|AEE59296.1| tRNA (uracil-5-)-methyltransferase TrmA [Escherichia coli UMNK88] Length = 366 Score = 461 bits (1186), Expect = e-128, Method: Composition-based stats. Identities = 245/361 (67%), Positives = 290/361 (80%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L +QYE QLAEKV RL+ MM F ++FRS HYRMRAEF IWHDGDDLYHI+FD Sbjct: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTK R+R+D F S LIN LM M+A +R P+LR KLFQIDYLT+ S+QA+V+L+YH Sbjct: 66 QQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + LDD WR+ A LRDAL A+ + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E Sbjct: 126 KKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+ MLEW L TKG +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAANH++NV+I+RM+++EFTQAM REFNRL+ ID+ SY+ +TIFVDPPRSGL Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D T MVQAYP ILYISCNP++LC++L LS TH +ERLALFDQFPYT HMECGVLL Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTA 365 Query: 365 K 365 K Sbjct: 366 K 366 >gi|253991701|ref|YP_003043057.1| tRNA (uracil-5-)-methyltransferase [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253783151|emb|CAQ86316.1| tRNA (uracil-5-)-methyltransferase [Photorhabdus asymbiotica] Length = 366 Score = 461 bits (1186), Expect = e-128, Method: Composition-based stats. Identities = 232/364 (63%), Positives = 292/364 (80%) Query: 1 MSGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60 M L + YEQQL EKV RL+ MM +FQ P ++FRS HYRMRAEF IWH+ DDLYH Sbjct: 1 MQNPLPTESYEQQLTEKVSRLKSMMASFQTPEPEVFRSPVSHYRMRAEFRIWHEQDDLYH 60 Query: 61 IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVT 120 IMFDQQTK+R+RI+ F S LIN +M ++ +IR E LR KLFQIDYL++ S++ +V+ Sbjct: 61 IMFDQQTKQRVRINQFPVASNLINKMMEGLIDSIRSEQTLRHKLFQIDYLSTCSNKILVS 120 Query: 121 LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIY 180 L+YH+ L D W + A++LR+ L + + ++LIGRA KTKI LD DY+DE L+VAGR +IY Sbjct: 121 LLYHKKLGDEWTQQALKLRNELRNKGFDVELIGRAAKTKIMLDHDYIDEVLSVAGREMIY 180 Query: 181 RQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240 RQ+ENSFTQPNA +N+HMLEW + TKG +GDLLELYCGNGNFSL LA++F++VLA EIA Sbjct: 181 RQVENSFTQPNASVNIHMLEWAIDITKGSKGDLLELYCGNGNFSLALAQNFEKVLATEIA 240 Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300 KPSV AA+YNI AN+++NV+I+RMS++EFTQAM EREFNRL++ID+ SY+ +TIFVDPP Sbjct: 241 KPSVAAAQYNITANNIDNVQIIRMSAEEFTQAMNGEREFNRLQNIDLKSYQCETIFVDPP 300 Query: 301 RSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360 RSGLD+ TV MVQAYP ILYISCNP++LC +L L+ TH I RLALFDQFPYT HMECGV Sbjct: 301 RSGLDEKTVKMVQAYPRILYISCNPETLCHNLETLTQTHKISRLALFDQFPYTHHMECGV 360 Query: 361 LLVR 364 LL + Sbjct: 361 LLEK 364 >gi|170681986|ref|YP_001746357.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli SMS-3-5] gi|218707592|ref|YP_002415111.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli UMN026] gi|293407586|ref|ZP_06651505.1| tRNA (Uracil54-C5-)-methyltransferase [Escherichia coli FVEC1412] gi|298383334|ref|ZP_06992927.1| tRNA (Uracil54-C5-)-methyltransferase [Escherichia coli FVEC1302] gi|300896470|ref|ZP_07114997.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 198-1] gi|226705977|sp|B7NFR5|TRMA_ECOLU RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|226705979|sp|B1LNS5|TRMA_ECOSM RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|170519704|gb|ACB17882.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli SMS-3-5] gi|218434689|emb|CAR15622.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli UMN026] gi|284924066|emb|CBG37165.1| tRNA (uracil-5)-methyltransferase [Escherichia coli 042] gi|291425503|gb|EFE98542.1| tRNA (Uracil54-C5-)-methyltransferase [Escherichia coli FVEC1412] gi|298276368|gb|EFI17888.1| tRNA (Uracil54-C5-)-methyltransferase [Escherichia coli FVEC1302] gi|300359663|gb|EFJ75533.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 198-1] Length = 366 Score = 461 bits (1186), Expect = e-128, Method: Composition-based stats. Identities = 245/361 (67%), Positives = 290/361 (80%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L +QYE QLAEKV RL+ MM F ++FRS HYRMRAEF IWHDGDDLYHI+FD Sbjct: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTK R+R+D F S LIN LM M+A +R P+LR KLFQIDYLT+ S+QA+V+L+YH Sbjct: 66 QQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + LDD WR+ A LRDAL A+ + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E Sbjct: 126 KKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+ MLEW L TKG +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAANH++NV+I+RM+++EFTQAM REFNRL+ ID+ SY+ +TIFVDPPRSGL Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D T MVQAYP ILYISCNP++LC++L LS TH +ERLALFDQFPYT HMECGVLL Sbjct: 306 DGETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTA 365 Query: 365 K 365 K Sbjct: 366 K 366 >gi|300986809|ref|ZP_07177799.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 200-1] gi|300306386|gb|EFJ60906.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 200-1] Length = 366 Score = 461 bits (1185), Expect = e-127, Method: Composition-based stats. Identities = 243/361 (67%), Positives = 289/361 (80%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L +QYE QLAEKV RL+ MM F ++FRS HYRMRAEF IWHDGDDLYHI+FD Sbjct: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTK R+R+D S LIN LM M+A +R P+LR KLFQIDYLT+ S+QA+V+L+YH Sbjct: 66 QQTKSRIRVDSSPAASELINQLMTAMIAGVRNNPILRHKLFQIDYLTTLSNQAVVSLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + LDD WR+ A LRDAL A+ + LIGRA KTKI LD+DY+DERL +AG+ +IYRQ+E Sbjct: 126 KKLDDEWRQQAEALRDALRAQNLNVHLIGRATKTKIALDQDYIDERLPIAGKEMIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+ MLEW L TKG +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAANH++NV+I+RM+++EFTQAM REFNRL+ ID+ SY+ +TIFVDPPRSGL Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D T MVQAYP ILYISCNP++LC++L LS TH +ERLALFDQFPYT HMECGVLL Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTA 365 Query: 365 K 365 K Sbjct: 366 K 366 >gi|82778852|ref|YP_405201.1| tRNA (uracil-5-)-methyltransferase [Shigella dysenteriae Sd197] gi|309783924|ref|ZP_07678569.1| tRNA (uracil-5-)-methyltransferase [Shigella dysenteriae 1617] gi|123561308|sp|Q32AE5|TRMA_SHIDS RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|81243000|gb|ABB63710.1| tRNA (uracil-5-)-methyltransferase [Shigella dysenteriae Sd197] gi|308928295|gb|EFP73757.1| tRNA (uracil-5-)-methyltransferase [Shigella dysenteriae 1617] Length = 366 Score = 461 bits (1185), Expect = e-127, Method: Composition-based stats. Identities = 244/361 (67%), Positives = 289/361 (80%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L +QYE QLAEKV RL+ MM F ++FRS HYRMRAEF IWHDGDDLYHI+FD Sbjct: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTK R+R+D F S LIN LM M+A +R P+LR KLFQIDYLT+ S+QA+V+L+YH Sbjct: 66 QQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + LDD WR+ A LRDAL A+ + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E Sbjct: 126 KKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIALDQDYIDERLPVAGKEMIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+ MLEW L TKG +GDLLELYCGNGNFSL LA +FDRVLA EIAKPSV Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALAHNFDRVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAANH++NV+I+RM+++EFTQAM REFNRL+ ID+ SY+ +TIFVDPPRSGL Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D T MVQAYP ILYISCNP++LC++L LS TH +ERLALFDQFPYT HMECGVLL Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTA 365 Query: 365 K 365 K Sbjct: 366 K 366 >gi|168748726|ref|ZP_02773748.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O157:H7 str. EC4113] gi|168755661|ref|ZP_02780668.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O157:H7 str. EC4401] gi|168768279|ref|ZP_02793286.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O157:H7 str. EC4486] gi|168775188|ref|ZP_02800195.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O157:H7 str. EC4196] gi|168780894|ref|ZP_02805901.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O157:H7 str. EC4076] gi|195937617|ref|ZP_03082999.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O157:H7 str. EC4024] gi|208808578|ref|ZP_03250915.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O157:H7 str. EC4206] gi|208813900|ref|ZP_03255229.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O157:H7 str. EC4045] gi|208821447|ref|ZP_03261767.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O157:H7 str. EC4042] gi|209397508|ref|YP_002273489.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O157:H7 str. EC4115] gi|254795972|ref|YP_003080809.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O157:H7 str. TW14359] gi|226705973|sp|B5Z069|TRMA_ECO5E RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|187769134|gb|EDU32978.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O157:H7 str. EC4196] gi|188016809|gb|EDU54931.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O157:H7 str. EC4113] gi|189001468|gb|EDU70454.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O157:H7 str. EC4076] gi|189357216|gb|EDU75635.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O157:H7 str. EC4401] gi|189362699|gb|EDU81118.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O157:H7 str. EC4486] gi|208728379|gb|EDZ77980.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O157:H7 str. EC4206] gi|208735177|gb|EDZ83864.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O157:H7 str. EC4045] gi|208741570|gb|EDZ89252.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O157:H7 str. EC4042] gi|209158908|gb|ACI36341.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O157:H7 str. EC4115] gi|209751946|gb|ACI74280.1| outer membrane vitamin B12 receptor protein BtuB [Escherichia coli] gi|254595372|gb|ACT74733.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O157:H7 str. TW14359] Length = 366 Score = 461 bits (1185), Expect = e-127, Method: Composition-based stats. Identities = 244/361 (67%), Positives = 289/361 (80%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L +QYE QLAEKV RL+ MM F ++FRS HYRMRAEF IWHDGDDLYHI+FD Sbjct: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTK R+R+D F S LIN LM M+A +R P+LR KLFQIDYLT+ S+QA+V+L+YH Sbjct: 66 QQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + LDD WR+ A LRDAL A+ + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E Sbjct: 126 KKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIALDQDYIDERLPVAGKEMIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+ MLEW L TKG +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAANH++NV+I+RM+++EFTQAM REFNRL+ ID+ SY+ +TIFVDPPRSGL Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D T MVQAYP ILYISCNP++LC++L LS TH +ERLALFDQFPYT HMEC VLL Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECSVLLTA 365 Query: 365 K 365 K Sbjct: 366 K 366 >gi|170769705|ref|ZP_02904158.1| tRNA (uracil-5-)-methyltransferase [Escherichia albertii TW07627] gi|170121513|gb|EDS90444.1| tRNA (uracil-5-)-methyltransferase [Escherichia albertii TW07627] Length = 366 Score = 460 bits (1184), Expect = e-127, Method: Composition-based stats. Identities = 245/361 (67%), Positives = 290/361 (80%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L +QYE QLAEKV RL+ MM F ++FRS HYRMRAEF IWHDGDDLYHI+FD Sbjct: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTK R+R++ F S LIN LM M+A +R P+LR KLFQIDYLT+ S+QA+V+L+YH Sbjct: 66 QQTKSRIRVESFPAASELINQLMTAMIAGVRNNPVLRNKLFQIDYLTTLSNQAVVSLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + LDD WR+ A LRDAL A+ + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E Sbjct: 126 KKLDDEWRQQAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+ MLEW L TKG +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAANH++NV+I+RM+++EFTQAM REFNRL+ ID+ SY+ +TIFVDPPRSGL Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D T MVQAYP ILYISCNP++LC++L LS TH IERLALFDQFPYT HMECGVLL Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKIERLALFDQFPYTHHMECGVLLTA 365 Query: 365 K 365 K Sbjct: 366 K 366 >gi|238794888|ref|ZP_04638487.1| tRNA (uracil-5-)-methyltransferase [Yersinia intermedia ATCC 29909] gi|238725763|gb|EEQ17318.1| tRNA (uracil-5-)-methyltransferase [Yersinia intermedia ATCC 29909] Length = 367 Score = 460 bits (1184), Expect = e-127, Method: Composition-based stats. Identities = 240/361 (66%), Positives = 285/361 (78%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L D Y+QQLAEK RL+ MM FQ P +IFRS HYRMRAEF +WHD DDLYHIMFD Sbjct: 6 LPTDSYDQQLAEKSARLQAMMSPFQAPAAEIFRSPAEHYRMRAEFRVWHDEDDLYHIMFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTK+R+R++ F SLLIN LM +M IR EP+LR KLFQIDYL++ S + I +L+YH Sbjct: 66 QQTKQRIRVEQFPVASLLINRLMSALMTAIRAEPILRRKLFQIDYLSTLSGKLIASLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 R LD+ W++ A+ LRD L A+ + +QLIGRA KTKI LD DY+DE L VAGR +IYRQ+E Sbjct: 126 RQLDEEWQQKALELRDQLRAQGFDLQLIGRAAKTKIMLDHDYIDEVLPVAGREMIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+HMLEW + TK GDLLELYCGNGNFSL LAR+F RVLA EIAKPSV Sbjct: 186 NSFTQPNAAVNIHMLEWAIDTTKNASGDLLELYCGNGNFSLALARNFARVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAAN+++NV+I+RMS++EFTQAM REFNRLK ID+ SY +TIFVDPPRSGL Sbjct: 246 AAAQYNIAANNIDNVQIIRMSAEEFTQAMLGVREFNRLKGIDLSSYNCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 DD TV +VQ YP ILYISCNP++LC +L L TH I RLALFDQFPYT HMECGVLL + Sbjct: 306 DDETVKLVQGYPRILYISCNPETLCANLEQLQQTHKISRLALFDQFPYTHHMECGVLLEK 365 Query: 365 K 365 + Sbjct: 366 R 366 >gi|323190169|gb|EFZ75447.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli RN587/1] Length = 366 Score = 460 bits (1183), Expect = e-127, Method: Composition-based stats. Identities = 244/361 (67%), Positives = 290/361 (80%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L +QYE QLAEKV RL+ MM F ++FRS HYRMRAEF IWHDGDDLYHI+FD Sbjct: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTK R+R+D F S LI+ LM M+A +R P+LR KLFQIDYLT+ S+QA+V+L+YH Sbjct: 66 QQTKSRIRVDSFPAASELIDQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + LDD WR+ A LRDAL A+ + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E Sbjct: 126 KKLDDEWRQQAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+ MLEW L TKG +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAANH++NV+I+RM+++EFTQAM REFNRL+ ID+ SY+ +TIFVDPPRSGL Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D T MVQAYP ILYISCNP++LC++L LS TH +ERLALFDQFPYT HMECGVLL Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTA 365 Query: 365 K 365 K Sbjct: 366 K 366 >gi|300916978|ref|ZP_07133676.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 115-1] gi|300415730|gb|EFJ99040.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 115-1] Length = 366 Score = 459 bits (1182), Expect = e-127, Method: Composition-based stats. Identities = 244/361 (67%), Positives = 290/361 (80%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L +QYE QLA+KV RL+ MM F ++FRS HYRMRAEF IWHDGDDLYHI+FD Sbjct: 6 LPTEQYEAQLAKKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTK R+R+D F S LIN LM M+A +R P+LR KLFQIDYLT+ S+QA+V+L+YH Sbjct: 66 QQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + LDD WR+ A LRDAL A+ + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E Sbjct: 126 KKLDDEWRQEAESLRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+ MLEW L TKG +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAANH++NV+I+RM+++EFTQAM REFNRL+ ID+ SY+ +TIFVDPPRSGL Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D T MVQAYP ILYISCNP++LC++L LS TH +ERLALFDQFPYT HMECGVLL Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTA 365 Query: 365 K 365 K Sbjct: 366 K 366 >gi|290477206|ref|YP_003470123.1| tRNA (uracil-5-)-methyltransferase [Xenorhabdus bovienii SS-2004] gi|289176556|emb|CBJ83365.1| tRNA (uracil-5-)-methyltransferase [Xenorhabdus bovienii SS-2004] Length = 366 Score = 459 bits (1182), Expect = e-127, Method: Composition-based stats. Identities = 235/365 (64%), Positives = 288/365 (78%) Query: 1 MSGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60 M L + YE QL EKV RL+ MM+ F P ++FRS HYRMRAEF IWH+ DDLYH Sbjct: 1 MQNVLPTEDYENQLMEKVHRLKGMMMPFSAPEPEVFRSPASHYRMRAEFRIWHEQDDLYH 60 Query: 61 IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVT 120 IMFDQQTK+R+RID F + LIN +M ++A ++ LLR KLFQ+DYL++ S++ IV+ Sbjct: 61 IMFDQQTKQRIRIDQFPVANELINQMMQSIIAGVKDNSLLRHKLFQVDYLSTLSNKIIVS 120 Query: 121 LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIY 180 L+YH+ L+D WRE AI LRD L A + +QLIGRA+KTKI LD DY+DE L +AG+T+IY Sbjct: 121 LLYHKKLNDEWREHAITLRDQLKANGFDVQLIGRASKTKIILDHDYIDEELPIAGKTMIY 180 Query: 181 RQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240 RQ+ENSFTQPNA IN HMLEW + TKG +GDLLELYCGNGNFSL LA++FDRVLA EIA Sbjct: 181 RQVENSFTQPNASINTHMLEWAVGITKGAKGDLLELYCGNGNFSLALAQNFDRVLATEIA 240 Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300 KPSV AA++NI AN ++NV+I+RMS++EFTQAM EREFNRL ID+ SY+ +TIFVDPP Sbjct: 241 KPSVAAAQFNIEANQIDNVQIIRMSAEEFTQAMNGEREFNRLHGIDLKSYQCETIFVDPP 300 Query: 301 RSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360 RSGLDDATV MVQ Y ILYISCNP++L ++L L+ TH I RLALFDQFPYT HMECGV Sbjct: 301 RSGLDDATVKMVQGYSQILYISCNPETLSQNLETLTQTHKISRLALFDQFPYTHHMECGV 360 Query: 361 LLVRK 365 LL ++ Sbjct: 361 LLEKR 365 >gi|300937124|ref|ZP_07151982.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 21-1] gi|300457798|gb|EFK21291.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 21-1] Length = 366 Score = 459 bits (1181), Expect = e-127, Method: Composition-based stats. Identities = 244/361 (67%), Positives = 290/361 (80%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L +QYE QLAEKV RL+ MM F ++FRS HYRMRAEF IWHDGDDLYHI+FD Sbjct: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTK R+R+D F S LIN LM M+A +R P+LR KLFQIDYLT+ S+QA+V+L+YH Sbjct: 66 QQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + LDD WR+ A LRDAL A+ + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E Sbjct: 126 KKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+ MLEW L TKG +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAANH++NV+I+RM+++EFTQAM REF+RL+ ID+ SY+ +TIFVDPPRSGL Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFHRLQGIDLKSYQCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D T MVQAYP ILYISCNP++LC++L LS TH +ERLALFDQFPYT HMECGVLL Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTA 365 Query: 365 K 365 K Sbjct: 366 K 366 >gi|74314467|ref|YP_312886.1| tRNA (uracil-5-)-methyltransferase [Shigella sonnei Ss046] gi|187731935|ref|YP_001882659.1| tRNA (uracil-5-)-methyltransferase [Shigella boydii CDC 3083-94] gi|260858083|ref|YP_003231974.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O26:H11 str. 11368] gi|260870685|ref|YP_003237087.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O111:H- str. 11128] gi|123615618|sp|Q3YV11|TRMA_SHISS RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|226705994|sp|B2TWG0|TRMA_SHIB3 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|73857944|gb|AAZ90651.1| tRNA (uracil-5-)-methyltransferase [Shigella sonnei Ss046] gi|187428927|gb|ACD08201.1| tRNA (uracil-5-)-methyltransferase [Shigella boydii CDC 3083-94] gi|257756732|dbj|BAI28234.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O26:H11 str. 11368] gi|257767041|dbj|BAI38536.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O111:H- str. 11128] gi|320182827|gb|EFW57704.1| tRNA uracil-5--methyltransferase [Shigella flexneri CDC 796-83] gi|323155496|gb|EFZ41675.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli EPECa14] gi|323167444|gb|EFZ53152.1| tRNA (uracil-5-)-methyltransferase [Shigella sonnei 53G] gi|323174292|gb|EFZ59918.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli LT-68] gi|323177991|gb|EFZ63575.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli 1180] gi|332088253|gb|EGI93373.1| tRNA (uracil-5-)-methyltransferase [Shigella boydii 3594-74] Length = 366 Score = 459 bits (1181), Expect = e-127, Method: Composition-based stats. Identities = 245/361 (67%), Positives = 290/361 (80%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L +QYE QLAEKV RL+ MM F ++FRS HYRMRAEF IWHDGDDLYHI+FD Sbjct: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTK R+R+D F S LIN LM M+A +R P+LR KLFQIDYLT+ S+QA+V+L+YH Sbjct: 66 QQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + LDD WR+ A LRDAL A+ + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E Sbjct: 126 KKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+ MLEW L TKG +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAANH++NV+I+RM+++EFTQAM REFNRL+ ID+ SY+ +TIFVDPPRSGL Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D T MVQAYP ILYISCNP++LC++L LS TH +ERLALFDQFPYT HMECGVLL Sbjct: 306 DSETEKMVQAYPCILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTA 365 Query: 365 K 365 K Sbjct: 366 K 366 >gi|269140813|ref|YP_003297514.1| tRNA (uracil-5-)-methyltransferase [Edwardsiella tarda EIB202] gi|267986474|gb|ACY86303.1| tRNA (uracil-5-)-methyltransferase [Edwardsiella tarda EIB202] gi|304560573|gb|ADM43237.1| tRNA (Uracil54-C5-)-methyltransferase [Edwardsiella tarda FL6-60] Length = 366 Score = 459 bits (1181), Expect = e-127, Method: Composition-based stats. Identities = 238/361 (65%), Positives = 285/361 (78%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L + Y+ QL+EK+ RL QMM F P +Q FRS HYRMRAEF IWHDGDDLYHIMFD Sbjct: 6 LPTEHYDDQLSEKIHRLEQMMQPFGAPAVQAFRSPASHYRMRAEFRIWHDGDDLYHIMFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 Q+K+R+R+D F S LIN LM ++ +R P LR KLFQIDYL+++S Q IV+L+YH Sbjct: 66 PQSKQRIRVDRFPAASELINRLMPLLLDALRPNPTLRHKLFQIDYLSTRSGQIIVSLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 R LDDAW++ A LRDAL + + IQLIGRA+KTKICLD+D+VDE L VAGR +IYRQ+E Sbjct: 126 RALDDAWKQAAEALRDALRGQGFAIQLIGRASKTKICLDQDWVDEVLPVAGRQMIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA IN+ MLEW L AT+G GDLLELYCGNGNFSL LAR+F RVLA EIAKPSV Sbjct: 186 NSFTQPNAAINIQMLEWALDATRGAVGDLLELYCGNGNFSLALARNFRRVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNI+AN ++NV+I+RMS++EFTQAM+ R FNRL+ ID+HSY TIFVDPPRSGL Sbjct: 246 AAAQYNISANQIDNVQIIRMSAEEFTQAMQGVRAFNRLQGIDLHSYECNTIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D T+ MVQ Y +ILYISCNP +LC +L L+ +H I RLALFDQFPYT HMECGVLL R Sbjct: 306 DTDTLSMVQGYQNILYISCNPLTLCDNLHTLTQSHRITRLALFDQFPYTHHMECGVLLER 365 Query: 365 K 365 + Sbjct: 366 R 366 >gi|271502435|ref|YP_003335461.1| tRNA (uracil-5-)-methyltransferase [Dickeya dadantii Ech586] gi|270345990|gb|ACZ78755.1| tRNA (uracil-5-)-methyltransferase [Dickeya dadantii Ech586] Length = 367 Score = 459 bits (1181), Expect = e-127, Method: Composition-based stats. Identities = 238/361 (65%), Positives = 286/361 (79%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L IDQY+ QL EK RL MM F P +FRS HYRMRAEF IWHDGDDLYHIMFD Sbjct: 6 LPIDQYDAQLEEKTGRLGAMMAPFDAPAPVVFRSPVSHYRMRAEFRIWHDGDDLYHIMFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTK+R+R+D F S LIN LM ++ +R EP+LR KLFQIDYL++ S + V+L+YH Sbjct: 66 QQTKQRIRVDQFPAASELINRLMPVLLNALRAEPVLRRKLFQIDYLSTLSGEIAVSLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + LDD W++ A L D L A+ + +QLIGRA KTKICLDRDYVDE L VAGR +IYRQ+E Sbjct: 126 KALDDEWQQQARLLCDGLRAQGFALQLIGRATKTKICLDRDYVDECLPVAGRQMIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+ MLEW L+ T+G GDLLELYCGNGNFSL LAR+F+RVLA EIAKPSV Sbjct: 186 NSFTQPNAMMNIQMLEWALSVTQGATGDLLELYCGNGNFSLALARNFERVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAAN ++NV+I+RM+++EFTQAM R+FNRL+ ID+ SYR +TIFVDPPRSGL Sbjct: 246 AAAQYNIAANQIDNVQIIRMAAEEFTQAMTGVRQFNRLQGIDLKSYRCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D+ TV +VQAYP ILYISCNP++LC +L LS TH I +LALFDQFPYT HMECGVLL + Sbjct: 306 DNETVKLVQAYPRILYISCNPETLCANLETLSQTHQISQLALFDQFPYTHHMECGVLLEK 365 Query: 365 K 365 + Sbjct: 366 R 366 >gi|294634277|ref|ZP_06712819.1| tRNA (uracil-5-)-methyltransferase [Edwardsiella tarda ATCC 23685] gi|291092317|gb|EFE24878.1| tRNA (uracil-5-)-methyltransferase [Edwardsiella tarda ATCC 23685] Length = 372 Score = 459 bits (1181), Expect = e-127, Method: Composition-based stats. Identities = 238/361 (65%), Positives = 285/361 (78%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L + Y++QL EK+ RL QMM F P +Q FRS HYRMRAEF IWH+GDDLYHIMFD Sbjct: 12 LPTEHYDEQLQEKIHRLAQMMQPFGAPAVQAFRSPASHYRMRAEFRIWHEGDDLYHIMFD 71 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QTK R+R+D F S LIN LM ++ +R P LR KLFQIDYL+++S+QAI++L+YH Sbjct: 72 AQTKRRIRVDQFPAASELINRLMPLLIDALRPNPTLRHKLFQIDYLSTRSNQAIISLLYH 131 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 R LDDAWR A LR+ L A+ Y +QLIGRA+KTKICLDRD+VDE L +AGR +IYRQ+E Sbjct: 132 RPLDDAWRHAAQTLRNQLQAQGYDVQLIGRASKTKICLDRDWVDEVLPIAGRDMIYRQVE 191 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA IN+ MLEW L AT+ +GDLLELYCGNGNFSL LAR+F RVLA EIAKPSV Sbjct: 192 NSFTQPNAAINIQMLEWALDATQDARGDLLELYCGNGNFSLALARNFRRVLATEIAKPSV 251 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNI AN ++NV+I+RMS++EFTQAM+ R FNRL+ ID+HSY TIFVDPPRSGL Sbjct: 252 AAAQYNITANQIDNVQIIRMSAEEFTQAMQGVRAFNRLQGIDLHSYACNTIFVDPPRSGL 311 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D T+ MVQ YP ILYISCNP++LC +L LS +H + RLALFDQFPYT HMECGVLL R Sbjct: 312 DAETLNMVQGYPQILYISCNPETLCANLQTLSQSHRMTRLALFDQFPYTHHMECGVLLER 371 Query: 365 K 365 + Sbjct: 372 R 372 >gi|218551042|ref|YP_002384833.1| tRNA (uracil-5-)-methyltransferase [Escherichia fergusonii ATCC 35469] gi|226705981|sp|B7LUM8|TRMA_ESCF3 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|218358583|emb|CAQ91231.1| tRNA (uracil-5-)-methyltransferase [Escherichia fergusonii ATCC 35469] gi|325499293|gb|EGC97152.1| tRNA (uracil-5-)-methyltransferase [Escherichia fergusonii ECD227] Length = 366 Score = 459 bits (1180), Expect = e-127, Method: Composition-based stats. Identities = 245/361 (67%), Positives = 289/361 (80%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L +QYE QLAEKV RL+ MM F ++FRS HYRMRAEF IWHDGDDLYHI+FD Sbjct: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTK R+R+D F S LIN LM M+A +R P+LR KLFQIDYLT+ S+QA+V+L+YH Sbjct: 66 QQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + LDD WR+ A LRDAL A+ + LIGRA KTKI LD+DY+DERL VAGR +IYRQ+E Sbjct: 126 KKLDDEWRQQAEVLRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGREMIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+ MLEW L TK +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKDSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAANH++NV+I+RM+++EFTQAM REFNRL+ ID+ SY+ +TIFVDPPRSGL Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D T MVQAYP ILYISCNP++LC++L LS TH +ERLALFDQFPYT HMECGVLL Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTA 365 Query: 365 K 365 K Sbjct: 366 K 366 >gi|283787354|ref|YP_003367219.1| tRNA (uracil-5)-methyltransferase [Citrobacter rodentium ICC168] gi|282950808|emb|CBG90484.1| tRNA (uracil-5)-methyltransferase [Citrobacter rodentium ICC168] Length = 366 Score = 459 bits (1180), Expect = e-127, Method: Composition-based stats. Identities = 242/361 (67%), Positives = 287/361 (79%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L +QY+ QLAEKV RL+ MM F ++FRS HYRMRAEF IWHDGDDLYHI+FD Sbjct: 6 LPTEQYDAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTK R+R+D F S LIN LM M+A +R P+LR KLFQIDYLT+ S+QA+V+L+YH Sbjct: 66 QQTKSRIRVDSFPAASELINQLMSAMIAGVRNNPVLRQKLFQIDYLTTMSNQAVVSLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + LD+AWR+ A LRDAL A+ + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E Sbjct: 126 KKLDEAWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+ MLEW L T+G +GDLLELYCGNGNFSL LAR+FD VLA EIAKPSV Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTRGSKGDLLELYCGNGNFSLALARNFDHVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAAN + NV+I+RM+++EFTQAM REFNRLK +D+ SY+ +TIFVDPPRSGL Sbjct: 246 AAAQYNIAANGIENVQIIRMAAEEFTQAMNGVREFNRLKGVDLKSYQCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D T MVQAYP ILYISCNP +LC++L LS TH IERLALFDQFPYT HMECGVLL Sbjct: 306 DSETEKMVQAYPRILYISCNPQTLCKNLETLSQTHKIERLALFDQFPYTHHMECGVLLTA 365 Query: 365 K 365 K Sbjct: 366 K 366 >gi|324111410|gb|EGC05391.1| tRNA (uracil-5-)-methyltransferase [Escherichia fergusonii B253] Length = 366 Score = 459 bits (1180), Expect = e-127, Method: Composition-based stats. Identities = 245/361 (67%), Positives = 288/361 (79%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L +QYE QLAEKV RL+ MM F ++FRS HYRMRAEF IWHDGDDLYHI+FD Sbjct: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTK R+R+D F S LIN LM M+A +R P+LR KLFQIDYLT+ S+QA+V+L+YH Sbjct: 66 QQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + LDD WR+ A LRDAL A+ + LIGRA KTKI LD+DY+DERL VAGR +IYRQ+E Sbjct: 126 KKLDDEWRQQAEVLRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGREMIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+ MLEW L TK +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKDSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAANH++NV+I+RM+++EFTQAM REFNRL+ ID+ SY+ +TIFVDPPRSGL Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D T MVQAYP ILYISCNP +LC++L LS TH +ERLALFDQFPYT HMECGVLL Sbjct: 306 DSETEKMVQAYPRILYISCNPKTLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTA 365 Query: 365 K 365 K Sbjct: 366 K 366 >gi|242241178|ref|YP_002989359.1| tRNA (uracil-5-)-methyltransferase [Dickeya dadantii Ech703] gi|262827665|sp|C6C5A0|TRMA_DICDC RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|242133235|gb|ACS87537.1| tRNA (uracil-5-)-methyltransferase [Dickeya dadantii Ech703] Length = 367 Score = 459 bits (1180), Expect = e-127, Method: Composition-based stats. Identities = 234/362 (64%), Positives = 289/362 (79%) Query: 4 TLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63 TL IDQY+ QLAEK RL+ MM ++ P Q+FRS HYRMRAEF IWHDGDDLYHIMF Sbjct: 5 TLPIDQYDAQLAEKTGRLKAMMASYHAPEPQVFRSPVSHYRMRAEFRIWHDGDDLYHIMF 64 Query: 64 DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIY 123 DQQTK R+R+D F S LIN LM ++ +R LR KLFQIDYL++ S++ +V+L+Y Sbjct: 65 DQQTKHRIRVDQFPVASELINRLMPALLNALRPHLTLRRKLFQIDYLSTMSNEIVVSLLY 124 Query: 124 HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQI 183 H+ LDD WR+ AI LRD L + + +QLIGRA KTKICLD DYVDE L VAG+ ++YRQ+ Sbjct: 125 HKTLDDEWRQQAIALRDQLRQQGFNLQLIGRATKTKICLDHDYVDECLPVAGKQMVYRQV 184 Query: 184 ENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 ENSFTQPNA +N+ MLEW L+ T+G +GDLLELYCGNGNFSL LAR+F+RVLA EIAKPS Sbjct: 185 ENSFTQPNAAMNIQMLEWALSVTEGSKGDLLELYCGNGNFSLALARNFERVLATEIAKPS 244 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 V+AA+YNI AN + NV+I+RM+++EFTQAMR R+FNRL+ ID+ SYR TIFVDPPRSG Sbjct: 245 VQAAQYNITANQIGNVQIIRMAAEEFTQAMRGVRQFNRLEGIDLASYRCDTIFVDPPRSG 304 Query: 304 LDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363 LD+ TV +VQ YP ILYISCNP++LC +L+ L+ TH + +LALFDQFPYT HMECGVLL Sbjct: 305 LDEETVRLVQEYPRILYISCNPETLCANLATLTQTHRVSQLALFDQFPYTHHMECGVLLE 364 Query: 364 RK 365 ++ Sbjct: 365 KR 366 >gi|218701325|ref|YP_002408954.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli IAI39] gi|226705974|sp|B7NU35|TRMA_ECO7I RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|218371311|emb|CAR19143.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli IAI39] Length = 366 Score = 458 bits (1179), Expect = e-127, Method: Composition-based stats. Identities = 243/361 (67%), Positives = 290/361 (80%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L +QYE QLAEKV RL+ MM F ++FRS HYRMRAEF IWHDGDDLYHI+FD Sbjct: 6 LPTEQYEAQLAEKVVRLQSMMAPFSNLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTK R+R+D F S LIN LM M+A +R P+LR KLFQIDYLT+ S+QA+V+L+YH Sbjct: 66 QQTKSRIRVDSFPAASELINQLMSAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + L+D WR+ A LRDAL A+ + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E Sbjct: 126 KKLNDEWRQQAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+ MLEW L TKG +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAANH++NV+I+RM+++EFTQAM REF+RL+ ID+ SY+ +TIFVDPPRSGL Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFHRLQGIDLKSYQCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D T MVQAYP ILYISCNP++LC++L LS TH +ERLALFDQFPYT HMECGVLL Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTA 365 Query: 365 K 365 K Sbjct: 366 K 366 >gi|291619388|ref|YP_003522130.1| TrmA [Pantoea ananatis LMG 20103] gi|291154418|gb|ADD79002.1| TrmA [Pantoea ananatis LMG 20103] gi|327395711|dbj|BAK13133.1| tRNA (uracil-5-)-methyltransferase TrmA [Pantoea ananatis AJ13355] Length = 367 Score = 458 bits (1179), Expect = e-127, Method: Composition-based stats. Identities = 240/361 (66%), Positives = 287/361 (79%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L ++QY+ QLAEKV RL MM F P +++FRS HYRMRAEF IWH+GDDLYHI+FD Sbjct: 6 LPVEQYDAQLAEKVSRLETMMTPFAAPAVEVFRSPVSHYRMRAEFRIWHEGDDLYHIIFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 Q+TK+R+R+D F S LIN +M +MMA IR LLR KLFQIDYL++ S Q +++L+YH Sbjct: 66 QETKQRIRVDQFPAASELINQVMPKMMAAIRDNRLLRHKLFQIDYLSTMSHQIVISLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 R LD+ W++ A LRD L A +QLIGRA KTKICLDRDYVDERL VAG+ +IYRQ+E Sbjct: 126 RKLDEEWQQAASTLRDQLRAEGIDVQLIGRATKTKICLDRDYVDERLPVAGKEMIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+ MLEW L T G +GDLLELYCGNGNFSL LAR+F RVLA EIAKPSV Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTTGSRGDLLELYCGNGNFSLALARNFRRVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 +A+YNIAAN V+NV+I+RM+++EFTQAM R FNRL+ ID+ SY +TIFVDPPRSGL Sbjct: 246 ASAQYNIAANQVDNVQIIRMAAEEFTQAMNGVRSFNRLEGIDLKSYDCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D+ TV MVQAYP ILYISCNP +LC +L IL+ TH + RLALFDQFPYT HMECGVLL R Sbjct: 306 DEETVKMVQAYPAILYISCNPQTLCDNLRILAQTHDVTRLALFDQFPYTHHMECGVLLTR 365 Query: 365 K 365 K Sbjct: 366 K 366 >gi|304398951|ref|ZP_07380820.1| tRNA (uracil-5-)-methyltransferase [Pantoea sp. aB] gi|304353411|gb|EFM17789.1| tRNA (uracil-5-)-methyltransferase [Pantoea sp. aB] Length = 367 Score = 457 bits (1177), Expect = e-127, Method: Composition-based stats. Identities = 237/361 (65%), Positives = 283/361 (78%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L I+ Y+ QLAEKV RL MM F P++++FRS HYRMRAEF +WHDGDD+YHI+FD Sbjct: 6 LPIEDYDAQLAEKVSRLETMMTPFAAPDVEVFRSPVSHYRMRAEFRLWHDGDDIYHIIFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQT+ER+R+D F S LIN LM +M+A IR LR KLFQIDYL++ S+Q +++L+YH Sbjct: 66 QQTRERIRVDQFPAASQLINQLMPKMIAAIRDNRTLRHKLFQIDYLSTMSNQIVISLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 R LDD W++ A LRD L A +QLIGRA KTKICLDRDYVDE L VAGR +IYRQ+E Sbjct: 126 RKLDDEWQQAAAALRDQLRAEGLDVQLIGRATKTKICLDRDYVDECLPVAGREIIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+ MLEW L T+ QGDLLELYCGNGNFSL LAR+F RVLA EIAKPSV Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTQDSQGDLLELYCGNGNFSLALARNFRRVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 +A+YNIA N ++NV+I+RM+++EFTQAM R FNRL+ ID+ SY +TIFVDPPRSGL Sbjct: 246 ASAQYNIAVNQIDNVQIIRMAAEEFTQAMNGVRSFNRLEGIDLTSYECETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D+ TV MVQAYP ILYISCNP +L +L LS TH + RLALFDQFPYT HMECGVLL R Sbjct: 306 DEETVKMVQAYPRILYISCNPQTLSDNLQTLSETHDVTRLALFDQFPYTHHMECGVLLTR 365 Query: 365 K 365 K Sbjct: 366 K 366 >gi|238764509|ref|ZP_04625457.1| tRNA (uracil-5-)-methyltransferase [Yersinia kristensenii ATCC 33638] gi|238697321|gb|EEP90090.1| tRNA (uracil-5-)-methyltransferase [Yersinia kristensenii ATCC 33638] Length = 390 Score = 457 bits (1175), Expect = e-126, Method: Composition-based stats. Identities = 241/367 (65%), Positives = 288/367 (78%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L D YE QLAEK RL+ MM FQ P+ Q+FRS HYRMRAEF +WHD DDLYHIMFD Sbjct: 6 LPTDGYEHQLAEKSARLQAMMSPFQAPDPQVFRSPAQHYRMRAEFRVWHDDDDLYHIMFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTK+R+R++ F SLLIN LM +M IR EP+LR KLFQIDYL++ S + I +L+YH Sbjct: 66 QQTKQRIRVEQFPVASLLINRLMSVLMTAIRAEPILRRKLFQIDYLSTLSGKLIASLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 R LD+ W++ A LRD L + + +QLIGRA+KTKI LD DY+DE L VAGR +IYRQ+E Sbjct: 126 RPLDEEWQQKARELRDQLREQGFDLQLIGRASKTKIMLDHDYIDEVLPVAGREMIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+HMLEW + T+ GDLLELYCGNGNFSL LAR+F+RVLA EIAKPSV Sbjct: 186 NSFTQPNAAVNIHMLEWAIDVTQHASGDLLELYCGNGNFSLALARNFERVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAANH++NV+I+RMS++EFTQAM+ REFNRLK ID+ SY +TIFVDPPRSGL Sbjct: 246 AAAQYNIAANHIDNVQIIRMSAEEFTQAMQGVREFNRLKYIDLSSYNCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 DD TV +VQAYP ILYISCNP++LC +L L TH I RLALFDQFPYT HMECGVLL + Sbjct: 306 DDETVKLVQAYPRILYISCNPETLCANLEQLQHTHKISRLALFDQFPYTHHMECGVLLEK 365 Query: 365 KPSGWHQ 371 + Q Sbjct: 366 EADEKRQ 372 >gi|186972974|pdb|3BT7|A Chain A, Structure Of E. Coli 5-Methyluridine Methyltransferase Trma In Complex With 19 Nucleotide T-Arm Analogue gi|186972975|pdb|3BT7|B Chain B, Structure Of E. Coli 5-Methyluridine Methyltransferase Trma In Complex With 19 Nucleotide T-Arm Analogue Length = 369 Score = 457 bits (1175), Expect = e-126, Method: Composition-based stats. Identities = 244/361 (67%), Positives = 290/361 (80%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L +QYE QLAEKV RL+ MM F ++FRS HYRMRAEF IWHDGDDLYHI+FD Sbjct: 9 LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 68 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTK R+R+D F S LIN LM M+A +R P+LR KLFQIDYLT+ S+QA+V+L+YH Sbjct: 69 QQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYH 128 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + LDD WR+ A LRDAL A+ + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E Sbjct: 129 KKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVE 188 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+ MLEW L TKG +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV Sbjct: 189 NSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 248 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAANH++NV+I+RM+++EFTQAM REFNRL+ ID+ SY+ +TIFVDPPRSGL Sbjct: 249 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 308 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D T MVQAYP ILYISCNP++LC++L LS TH +ERLALFDQFPYT HM+CGVLL Sbjct: 309 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMQCGVLLTA 368 Query: 365 K 365 K Sbjct: 369 K 369 >gi|168262959|ref|ZP_02684932.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|238912269|ref|ZP_04656106.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|205348285|gb|EDZ34916.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] Length = 366 Score = 457 bits (1175), Expect = e-126, Method: Composition-based stats. Identities = 240/359 (66%), Positives = 285/359 (79%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L +QYE QLAEKV RL+ MM F ++FRS HYRMRAEF +WHDGDDLYHIMFD Sbjct: 6 LPTEQYEAQLAEKVARLQSMMAPFSGLVPEVFRSPVSHYRMRAEFRLWHDGDDLYHIMFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTK R+R+D F S LIN LM M+A +R LR KLFQIDYLT+ S+QA+V+L+YH Sbjct: 66 QQTKSRIRVDTFPAASQLINTLMKAMIAGVRDNHALRHKLFQIDYLTTLSNQAVVSLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + LD+ WRE A LRDAL A+ + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E Sbjct: 126 KKLDEEWREAATALRDALRAQGLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+ MLEW L TK +GDLLELYCGNGNFSL LAR+F+RVLA EIAKPSV Sbjct: 186 NSFTQPNAAMNIQMLEWALEVTKDSKGDLLELYCGNGNFSLALARNFNRVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAANH++NV+I+RM+++EFTQAM REFNRL+ ID+ Y+ +TIFVDPPRSGL Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKGYQCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363 D T MVQAYP ILYISCNP++LC++L LS THT+ RLALFDQFPYT HMECGVLL Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHTVSRLALFDQFPYTHHMECGVLLT 364 >gi|237728078|ref|ZP_04558559.1| tRNA (uracil-5-)-methyltransferase [Citrobacter sp. 30_2] gi|226910335|gb|EEH96253.1| tRNA (uracil-5-)-methyltransferase [Citrobacter sp. 30_2] Length = 366 Score = 457 bits (1175), Expect = e-126, Method: Composition-based stats. Identities = 233/361 (64%), Positives = 284/361 (78%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L +QY+ QLAEKV RL+ +M F ++FRS HYRMRAEF +WHDGDDLYHIMFD Sbjct: 6 LPTEQYDAQLAEKVVRLQSLMTPFYAQAPEVFRSPVSHYRMRAEFRLWHDGDDLYHIMFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QTK R+R+D F S LIN LM M+ +R +LR KLFQIDYLT+ S QA+V+++YH Sbjct: 66 SQTKNRIRVDSFPAASELINTLMTAMIEGVRNNYVLRHKLFQIDYLTTLSGQAVVSMLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + LDD WR+ A LRDAL A+ + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E Sbjct: 126 KKLDDEWRQEAEALRDALRAKNLNVHLIGRATKTKIELDQDYIDERLPVAGKEIIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+ MLEW + T+G +GDLLELYCGNGNFSL LA++F+RVLA EIAKPSV Sbjct: 186 NSFTQPNAAMNIQMLEWAIDVTRGSKGDLLELYCGNGNFSLALAQNFNRVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAAN + NV+I+RM+++EFTQAM REFNRL+ ID+ SY+ +TIFVDPPRSGL Sbjct: 246 AAAQYNIAANQIENVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D T MVQAYP ILYISCNP++LC++L LS TH + RLALFDQFPYT HMECGVLL + Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHNVSRLALFDQFPYTHHMECGVLLTK 365 Query: 365 K 365 K Sbjct: 366 K 366 >gi|22124241|ref|NP_667664.1| tRNA (uracil-5-)-methyltransferase [Yersinia pestis KIM 10] gi|45442891|ref|NP_994430.1| tRNA (uracil-5-)-methyltransferase [Yersinia pestis biovar Microtus str. 91001] gi|51594482|ref|YP_068673.1| tRNA (uracil-5-)-methyltransferase [Yersinia pseudotuberculosis IP 32953] gi|108806109|ref|YP_650025.1| tRNA (uracil-5-)-methyltransferase [Yersinia pestis Antiqua] gi|108810222|ref|YP_645989.1| tRNA (uracil-5-)-methyltransferase [Yersinia pestis Nepal516] gi|145600770|ref|YP_001164846.1| tRNA (uracil-5-)-methyltransferase [Yersinia pestis Pestoides F] gi|150261126|ref|ZP_01917854.1| tRNA (uracil-5)-methyltransferase [Yersinia pestis CA88-4125] gi|153948502|ref|YP_001399141.1| tRNA (uracil-5-)-methyltransferase [Yersinia pseudotuberculosis IP 31758] gi|162420223|ref|YP_001604758.1| tRNA (uracil-5-)-methyltransferase [Yersinia pestis Angola] gi|165928371|ref|ZP_02224203.1| tRNA (uracil-5-)-methyltransferase [Yersinia pestis biovar Orientalis str. F1991016] gi|165936942|ref|ZP_02225508.1| tRNA (uracil-5-)-methyltransferase [Yersinia pestis biovar Orientalis str. IP275] gi|166009523|ref|ZP_02230421.1| tRNA (uracil-5-)-methyltransferase [Yersinia pestis biovar Antiqua str. E1979001] gi|166213748|ref|ZP_02239783.1| tRNA (uracil-5-)-methyltransferase [Yersinia pestis biovar Antiqua str. B42003004] gi|167401208|ref|ZP_02306708.1| tRNA (uracil-5-)-methyltransferase [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167420927|ref|ZP_02312680.1| tRNA (uracil-5-)-methyltransferase [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167425969|ref|ZP_02317722.1| tRNA (uracil-5-)-methyltransferase [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167467895|ref|ZP_02332599.1| tRNA (uracil-5-)-methyltransferase [Yersinia pestis FV-1] gi|170026281|ref|YP_001722786.1| tRNA (uracil-5-)-methyltransferase [Yersinia pseudotuberculosis YPIII] gi|186893475|ref|YP_001870587.1| tRNA (uracil-5-)-methyltransferase [Yersinia pseudotuberculosis PB1/+] gi|218930911|ref|YP_002348786.1| tRNA (uracil-5-)-methyltransferase [Yersinia pestis CO92] gi|229839607|ref|ZP_04459766.1| tRNA (uracil-5-)-methyltransferase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229841692|ref|ZP_04461848.1| tRNA (uracil-5-)-methyltransferase [Yersinia pestis biovar Orientalis str. India 195] gi|229896696|ref|ZP_04511861.1| tRNA (uracil-5-)-methyltransferase [Yersinia pestis Pestoides A] gi|229904754|ref|ZP_04519865.1| tRNA (uracil-5-)-methyltransferase [Yersinia pestis Nepal516] gi|270488737|ref|ZP_06205811.1| tRNA (uracil-5-)-methyltransferase [Yersinia pestis KIM D27] gi|294505561|ref|YP_003569623.1| tRNA (uracil-5-)-methyltransferase [Yersinia pestis Z176003] gi|20178150|sp|Q8ZAA0|TRMA_YERPE RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|116256438|sp|Q66G58|TRMA_YERPS RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|123246049|sp|Q1CBU2|TRMA_YERPA RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|123373576|sp|Q1CNP1|TRMA_YERPN RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|171704396|sp|A7FD13|TRMA_YERP3 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|172045573|sp|A4TRG1|TRMA_YERPP RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|226705996|sp|B2JZF7|TRMA_YERPB RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|226705997|sp|A9R6N8|TRMA_YERPG RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|226705998|sp|B1JQ46|TRMA_YERPY RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|21957006|gb|AAM83915.1|AE013632_3 tRNA (uracil-5-)-methyltransferase [Yersinia pestis KIM 10] gi|45437758|gb|AAS63307.1| tRNA (uracil-5)-methyltransferase [Yersinia pestis biovar Microtus str. 91001] gi|51587764|emb|CAH19364.1| tRNA (uracil-5)-methyltransferase [Yersinia pseudotuberculosis IP 32953] gi|108773870|gb|ABG16389.1| tRNA (uracil-5-)-methyltransferase [Yersinia pestis Nepal516] gi|108778022|gb|ABG12080.1| tRNA (uracil-5-)-methyltransferase [Yersinia pestis Antiqua] gi|115349522|emb|CAL22496.1| tRNA (uracil-5)-methyltransferase [Yersinia pestis CO92] gi|145212466|gb|ABP41873.1| tRNA (uracil-5-)-methyltransferase [Yersinia pestis Pestoides F] gi|149290534|gb|EDM40611.1| tRNA (uracil-5)-methyltransferase [Yersinia pestis CA88-4125] gi|152959997|gb|ABS47458.1| tRNA (uracil-5-)-methyltransferase [Yersinia pseudotuberculosis IP 31758] gi|162353038|gb|ABX86986.1| tRNA (uracil-5-)-methyltransferase [Yersinia pestis Angola] gi|165915184|gb|EDR33795.1| tRNA (uracil-5-)-methyltransferase [Yersinia pestis biovar Orientalis str. IP275] gi|165919601|gb|EDR36934.1| tRNA (uracil-5-)-methyltransferase [Yersinia pestis biovar Orientalis str. F1991016] gi|165991445|gb|EDR43746.1| tRNA (uracil-5-)-methyltransferase [Yersinia pestis biovar Antiqua str. E1979001] gi|166205150|gb|EDR49630.1| tRNA (uracil-5-)-methyltransferase [Yersinia pestis biovar Antiqua str. B42003004] gi|166961056|gb|EDR57077.1| tRNA (uracil-5-)-methyltransferase [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167049233|gb|EDR60641.1| tRNA (uracil-5-)-methyltransferase [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167055117|gb|EDR64916.1| tRNA (uracil-5-)-methyltransferase [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169752815|gb|ACA70333.1| tRNA (uracil-5-)-methyltransferase [Yersinia pseudotuberculosis YPIII] gi|186696501|gb|ACC87130.1| tRNA (uracil-5-)-methyltransferase [Yersinia pseudotuberculosis PB1/+] gi|229678872|gb|EEO74977.1| tRNA (uracil-5-)-methyltransferase [Yersinia pestis Nepal516] gi|229691031|gb|EEO83084.1| tRNA (uracil-5-)-methyltransferase [Yersinia pestis biovar Orientalis str. India 195] gi|229695973|gb|EEO86020.1| tRNA (uracil-5-)-methyltransferase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229700303|gb|EEO88337.1| tRNA (uracil-5-)-methyltransferase [Yersinia pestis Pestoides A] gi|262363628|gb|ACY60349.1| tRNA (uracil-5-)-methyltransferase [Yersinia pestis D106004] gi|262367558|gb|ACY64115.1| tRNA (uracil-5-)-methyltransferase [Yersinia pestis D182038] gi|270337241|gb|EFA48018.1| tRNA (uracil-5-)-methyltransferase [Yersinia pestis KIM D27] gi|294356020|gb|ADE66361.1| tRNA (uracil-5-)-methyltransferase [Yersinia pestis Z176003] gi|320013491|gb|ADV97062.1| tRNA uracil-5--methyltransferase [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 367 Score = 456 bits (1174), Expect = e-126, Method: Composition-based stats. Identities = 241/361 (66%), Positives = 288/361 (79%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L I+ Y+ QLAEK RL+ MML FQ P +IFRS HYRMRAEF +WHD DDLYHIMFD Sbjct: 6 LPIESYDHQLAEKSARLKAMMLPFQAPEPEIFRSPADHYRMRAEFRVWHDEDDLYHIMFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTK+R+R++ F S LIN LM +M IR EPLLR KLFQIDYL++ S + I +L+YH Sbjct: 66 QQTKQRIRVEQFPVASRLINRLMDALMTAIRAEPLLRRKLFQIDYLSTLSGKLIASLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 R LD+ W++ A+ LRD L A+ + +QLIGRA KTKI LD DY+DE L VAGR +IYRQ+E Sbjct: 126 RQLDEEWQQKALELRDQLRAQGFDLQLIGRAAKTKIMLDHDYIDEVLPVAGREMIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+HMLEW L T+G GDLLELYCGNGNFSL LAR+F+RVLA EIAKPSV Sbjct: 186 NSFTQPNAAVNIHMLEWALDVTQGATGDLLELYCGNGNFSLALARNFERVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAAN+++NV+I+RMS++EFTQAM+ REFNRLK ID+ SY +TIFVDPPRSGL Sbjct: 246 AAAQYNIAANNIDNVQIIRMSAEEFTQAMQGVREFNRLKGIDLGSYNCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D TV +VQAYP ILYISCNP++LC +L L TH I RLALFDQFPYT HMECGVLL + Sbjct: 306 DHETVKLVQAYPRILYISCNPETLCANLEQLQHTHKISRLALFDQFPYTHHMECGVLLEK 365 Query: 365 K 365 + Sbjct: 366 R 366 >gi|318603892|emb|CBY25390.1| tRNA (Uracil54-C5-)-methyltransferase [Yersinia enterocolitica subsp. palearctica Y11] Length = 367 Score = 456 bits (1173), Expect = e-126, Method: Composition-based stats. Identities = 242/362 (66%), Positives = 285/362 (78%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L D YE QLAEK RL+ MM FQ P +IFRS HYRMRAEF +WHD DDLYHIMFD Sbjct: 6 LPTDGYEHQLAEKSARLQAMMSPFQAPAAEIFRSPAEHYRMRAEFRVWHDEDDLYHIMFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTK+R+R++ F SLLIN LM +M I EP+LR KLFQIDYL++ S + + TL+YH Sbjct: 66 QQTKQRIRVEQFPVASLLINRLMSALMTAIIAEPILRRKLFQIDYLSTLSGKLLATLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 R LD+ W++ A LRD L + + +QLIGRA+KTKI LD DYVDE L VAGR +IYRQIE Sbjct: 126 RPLDEEWQQKARELRDQLREQGFDLQLIGRASKTKIMLDHDYVDEVLPVAGRDMIYRQIE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+HMLEW + T+ GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV Sbjct: 186 NSFTQPNAAVNIHMLEWAIDVTQHASGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAANH++NV+I+RMS++EFTQAM+ REFNRLK ID+ SY +TIFVDPPRSGL Sbjct: 246 AAAQYNIAANHIDNVQIIRMSAEEFTQAMQGVREFNRLKGIDLTSYNCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 DD TV +VQAYP ILYISCNP++LC +L L TH I RLALFDQFPYT HMECGVLL + Sbjct: 306 DDETVKLVQAYPRILYISCNPETLCANLEQLQHTHKISRLALFDQFPYTHHMECGVLLEK 365 Query: 365 KP 366 + Sbjct: 366 RD 367 >gi|238799430|ref|ZP_04642858.1| tRNA (uracil-5-)-methyltransferase [Yersinia mollaretii ATCC 43969] gi|238716724|gb|EEQ08612.1| tRNA (uracil-5-)-methyltransferase [Yersinia mollaretii ATCC 43969] Length = 367 Score = 456 bits (1173), Expect = e-126, Method: Composition-based stats. Identities = 240/361 (66%), Positives = 286/361 (79%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L D YE QLAEK RL+ MML FQ P +IFRS HYRMRAEF +WHD DDLYHIMFD Sbjct: 6 LPTDGYENQLAEKSARLQAMMLPFQAPAPEIFRSPAEHYRMRAEFRVWHDEDDLYHIMFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTK+R+R++ F SLLIN LM +M IR EP+LR KLFQIDYL++ S + I +L+YH Sbjct: 66 QQTKQRIRVEQFPVASLLINRLMSALMTAIRAEPILRRKLFQIDYLSTLSGKLIASLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 R LD+ W++ A LRD L + + +QLIGRA+KTKI LD DY+DE L VAGR +IYRQ+E Sbjct: 126 RPLDEEWQQKARELRDQLREQGFDLQLIGRASKTKIMLDHDYIDEVLPVAGREMIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+HMLEW + T+ GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV Sbjct: 186 NSFTQPNAAVNIHMLEWAIDVTQQASGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAAN+++NV+I+RMS++EFTQAM+ REFNRLK ID+ SY +TIFVDPPRSGL Sbjct: 246 AAAQYNIAANNIDNVQIIRMSAEEFTQAMQGAREFNRLKGIDLSSYNCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 DD TV +VQAYP ILYISCNP++LC +L L TH I RLALFDQFPYT HMECGV L + Sbjct: 306 DDETVKLVQAYPRILYISCNPETLCANLEQLQHTHKISRLALFDQFPYTHHMECGVWLEK 365 Query: 365 K 365 + Sbjct: 366 R 366 >gi|168467481|ref|ZP_02701318.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|200388499|ref|ZP_03215111.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|195630197|gb|EDX48837.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|199605597|gb|EDZ04142.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Virchow str. SL491] Length = 366 Score = 456 bits (1172), Expect = e-126, Method: Composition-based stats. Identities = 240/359 (66%), Positives = 285/359 (79%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L +QYE QLAEKV RL+ MM F ++FRS HYRMRAEF +WHDGDDLYHIMFD Sbjct: 6 LPTEQYEAQLAEKVARLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRLWHDGDDLYHIMFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTK R+R+D F S LIN LM M+A +R LR KLFQIDYLT+ S+QA+V+L+YH Sbjct: 66 QQTKSRIRVDTFPAASQLINTLMKAMIAGVRDNHALRHKLFQIDYLTTLSNQAVVSLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + LD+ WRE A LRDAL A+ + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E Sbjct: 126 KKLDEEWREAATALRDALRAQGLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+ MLEW L TK +GDLLELYCGNGNFSL LAR+F+RVLA EIAKPSV Sbjct: 186 NSFTQPNAAMNIQMLEWALEVTKDSKGDLLELYCGNGNFSLALARNFNRVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAANH++NV+I+RM+++EFTQAM REFNRL+ ID+ Y+ +TIFVDPPRSGL Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKGYQCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363 D T MVQAYP ILYISCNP++LC++L LS THT+ RLALFDQFPYT HMECGVLL Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHTVSRLALFDQFPYTHHMECGVLLT 364 >gi|308188584|ref|YP_003932715.1| tRNA (uracil-5-)-methyltransferase [Pantoea vagans C9-1] gi|308059094|gb|ADO11266.1| tRNA (uracil-5-)-methyltransferase [Pantoea vagans C9-1] Length = 367 Score = 456 bits (1172), Expect = e-126, Method: Composition-based stats. Identities = 236/361 (65%), Positives = 283/361 (78%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L I++Y+ QLAEKV RL MM F P++++FRS HYRMRAEF +WHDGDD+YHI+FD Sbjct: 6 LPIEEYDAQLAEKVSRLETMMTPFAAPDVEVFRSPVSHYRMRAEFRLWHDGDDIYHIIFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQT+ER+R+D F S LIN LM +M+A IR LR KLFQIDYL++ S+Q +++L+YH Sbjct: 66 QQTRERIRVDQFPAASQLINQLMPKMIAAIRDNRTLRHKLFQIDYLSTMSNQIVISLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 R LDD W + A LRD L A +QLIGRA KTKICLDRD+VDE L VAGR +IYRQ+E Sbjct: 126 RKLDDEWLQAAAALRDQLRAEGLDVQLIGRATKTKICLDRDFVDECLPVAGREIIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+ MLEW L T+ QGDLLELYCGNGNFSL LAR+F RVLA EIAKPSV Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTQDSQGDLLELYCGNGNFSLALARNFRRVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 +A+YNIA N ++NV+I+RM+++EFTQAM R FNRL+ ID+ SY +TIFVDPPRSGL Sbjct: 246 ASAQYNIAVNQIDNVQIIRMAAEEFTQAMNGVRSFNRLEGIDLTSYECETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D+ TV MVQAYP ILYISCNP +L +L LS TH + RLALFDQFPYT HMECGVLL R Sbjct: 306 DEETVKMVQAYPRILYISCNPQTLSDNLQTLSETHEVTRLALFDQFPYTHHMECGVLLTR 365 Query: 365 K 365 K Sbjct: 366 K 366 >gi|293393499|ref|ZP_06637809.1| tRNA (uracil-5-)-methyltransferase [Serratia odorifera DSM 4582] gi|291423834|gb|EFE97053.1| tRNA (uracil-5-)-methyltransferase [Serratia odorifera DSM 4582] Length = 367 Score = 456 bits (1172), Expect = e-126, Method: Composition-based stats. Identities = 234/362 (64%), Positives = 283/362 (78%) Query: 4 TLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63 L I++Y++QL EK RL MM F P ++FRS HYRMRAEF IWHD D++YHIMF Sbjct: 5 NLPIERYDEQLTEKTQRLASMMSPFGAPEPEVFRSPVSHYRMRAEFRIWHDDDEMYHIMF 64 Query: 64 DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIY 123 DQQTK+R+R+D F S LIN LM ++A I+ +P+LR KLFQIDYL+++S + I +L+Y Sbjct: 65 DQQTKQRIRVDRFPAASELINRLMTALIAAIKPQPVLRRKLFQIDYLSTRSGKIIASLLY 124 Query: 124 HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQI 183 HR LDD W+ A +LRD L A+ + +QLIGRA+K KI LD DY+DE L VAGR +IYRQ+ Sbjct: 125 HRKLDDEWQRHAEQLRDDLRAQGFDLQLIGRASKMKITLDHDYIDEVLPVAGRDMIYRQV 184 Query: 184 ENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 ENSFTQPNA INV MLEW L T+ +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPS Sbjct: 185 ENSFTQPNAAINVAMLEWALDVTRHAKGDLLELYCGNGNFSLALARNFDRVLATEIAKPS 244 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 V AA+YNIAAN V+NV+I+RM+++EFTQAM R FNRL+ ID+ SY +TIFVDPPRSG Sbjct: 245 VAAAQYNIAANQVDNVQIIRMAAEEFTQAMNGVRSFNRLQGIDLSSYNCETIFVDPPRSG 304 Query: 304 LDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363 LDD TV MVQAYP ILYISCNP++L +L L TH I RLALFDQFPYT HMECGVLL Sbjct: 305 LDDETVKMVQAYPRILYISCNPETLSANLDTLQATHDITRLALFDQFPYTHHMECGVLLE 364 Query: 364 RK 365 ++ Sbjct: 365 KR 366 >gi|168244113|ref|ZP_02669045.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|194448074|ref|YP_002048126.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|226705989|sp|B4TCR0|TRMA_SALHS RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|194406378|gb|ACF66597.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|205336861|gb|EDZ23625.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] Length = 366 Score = 455 bits (1171), Expect = e-126, Method: Composition-based stats. Identities = 239/359 (66%), Positives = 285/359 (79%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L +QYE QLAEKV RL+ MM F ++FRS HYRMRAEF +WHDGDDLYHIMFD Sbjct: 6 LPTEQYEAQLAEKVARLQSMMAPFSGLVPEVFRSPVSHYRMRAEFRLWHDGDDLYHIMFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTK R+R+D F S LIN LM M+A +R LR KLFQ+DYLT+ S+QA+V+L+YH Sbjct: 66 QQTKSRIRVDTFPAASQLINTLMKAMIAGVRDNHALRHKLFQMDYLTTLSNQAVVSLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + LD+ WRE A LRDAL A+ + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E Sbjct: 126 KKLDEEWREAATALRDALRAQGLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+ MLEW L TK +GDLLELYCGNGNFSL LAR+F+RVLA EIAKPSV Sbjct: 186 NSFTQPNAAMNIQMLEWALEVTKDSKGDLLELYCGNGNFSLALARNFNRVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAANH++NV+I+RM+++EFTQAM REFNRL+ ID+ Y+ +TIFVDPPRSGL Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKGYQCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363 D T MVQAYP ILYISCNP++LC++L LS THT+ RLALFDQFPYT HMECGVLL Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHTVSRLALFDQFPYTHHMECGVLLT 364 >gi|317494786|ref|ZP_07953198.1| tRNA (uracil-5-)-methyltransferase [Enterobacteriaceae bacterium 9_2_54FAA] gi|316917388|gb|EFV38735.1| tRNA (uracil-5-)-methyltransferase [Enterobacteriaceae bacterium 9_2_54FAA] Length = 367 Score = 455 bits (1171), Expect = e-126, Method: Composition-based stats. Identities = 229/363 (63%), Positives = 283/363 (77%) Query: 3 GTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIM 62 TL DQY+ QL EK+ RL MM F P ++ FRS HYRMRAEF +WHD DLYHIM Sbjct: 4 NTLPTDQYDAQLTEKITRLANMMTPFAAPEIEAFRSPASHYRMRAEFRVWHDESDLYHIM 63 Query: 63 FDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122 FDQQTK+R+R+D F S LIN LM MM +R +LR KLFQIDYL++ +++ +V+L+ Sbjct: 64 FDQQTKQRIRVDQFPAASELINRLMTVMMDELRPNQVLRFKLFQIDYLSTMNNKVVVSLL 123 Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182 YHR LD+ W+ A LRD L + + IQLIGRA KTKICLD+DYVDE L VAGR ++YRQ Sbjct: 124 YHRKLDEEWKAQAEALRDRLRTQGFDIQLIGRATKTKICLDQDYVDECLPVAGRDMVYRQ 183 Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 +ENSFTQPNA +N+ MLEW L TK +GDLLELYCGNGNFSL LAR+F+RVLA EIAKP Sbjct: 184 VENSFTQPNAAVNIKMLEWALDVTKNSKGDLLELYCGNGNFSLALARNFNRVLATEIAKP 243 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302 SV AA++NI+ANH++NV+I+RM++++FTQAM REF RL+ ID+ SY+ +TIFVDPPRS Sbjct: 244 SVAAAQFNISANHIDNVQIIRMAAEDFTQAMNGVREFKRLEGIDLKSYQCETIFVDPPRS 303 Query: 303 GLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362 GLDD T+ MVQAYP ILYISCNP++L +L L TH ++RLALFDQFPYT HMECGVLL Sbjct: 304 GLDDDTLRMVQAYPRILYISCNPETLSANLETLHETHQVKRLALFDQFPYTHHMECGVLL 363 Query: 363 VRK 365 ++ Sbjct: 364 EKR 366 >gi|292486641|ref|YP_003529511.1| tRNA (uracil-5-)-methyltransferase [Erwinia amylovora CFBP1430] gi|292897878|ref|YP_003537247.1| tRNA (uracil-5)-methyltransferase [Erwinia amylovora ATCC 49946] gi|291197726|emb|CBJ44821.1| tRNA (uracil-5)-methyltransferase [Erwinia amylovora ATCC 49946] gi|291552058|emb|CBA19095.1| tRNA (uracil-5-)-methyltransferase [Erwinia amylovora CFBP1430] Length = 367 Score = 455 bits (1171), Expect = e-126, Method: Composition-based stats. Identities = 238/361 (65%), Positives = 287/361 (79%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L I+QYE QL EKV RL MM AF VP +++FRS HYRMRAEF IWH+GDDLYHI+FD Sbjct: 6 LPIEQYEDQLTEKVTRLTSMMSAFNVPEVEVFRSAVSHYRMRAEFRIWHEGDDLYHIIFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQT+ER+R+D F S LIN LM ++ +R + +LR KLFQIDYL++ S Q +V+++YH Sbjct: 66 QQTRERIRVDSFPAASELINRLMPRLINRLRDQHVLRFKLFQIDYLSTVSGQMVVSMLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 R LD+ W+ A LRD L A + + LIGRA KTKICLD+DYVDERLTV GR + YRQ+E Sbjct: 126 RKLDEEWQRAATALRDGLRAEGFDLHLIGRATKTKICLDQDYVDERLTVDGREMTYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +NV MLEW L +T+ GDLLELYCGNGNFSL LAR+F+RVLA EIAKPSV Sbjct: 186 NSFTQPNAAVNVKMLEWALDSTRNASGDLLELYCGNGNFSLALARNFNRVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 +A+YNIA N ++NV+I+RM+++EFTQAM ER F RL+ ID+ SY+ +TIFVDPPRSGL Sbjct: 246 ASAQYNIAVNQIDNVQIIRMAAEEFTQAMNGERRFKRLEGIDLTSYQCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 DD TV MVQAYP ILYISCNP +LC +L+ LSTTH I RLALFDQFPYT HMECGVLL R Sbjct: 306 DDETVKMVQAYPCILYISCNPQTLCDNLATLSTTHDITRLALFDQFPYTHHMECGVLLTR 365 Query: 365 K 365 + Sbjct: 366 R 366 >gi|161505380|ref|YP_001572492.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|189036043|sp|A9MHG7|TRMA_SALAR RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|160866727|gb|ABX23350.1| hypothetical protein SARI_03534 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 366 Score = 455 bits (1171), Expect = e-126, Method: Composition-based stats. Identities = 240/361 (66%), Positives = 286/361 (79%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L +QY+ QLAEKV RL+ MM F ++FRS HYRMRAEF +WHDGDDLYHIMFD Sbjct: 6 LPTEQYDAQLAEKVARLQSMMAPFSGLVPEVFRSPASHYRMRAEFRLWHDGDDLYHIMFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTK R+R+D F S LIN LM M+A +R LR KLFQIDYLT+ S+QA+V+L+YH Sbjct: 66 QQTKSRIRVDSFPAASQLINTLMKAMIAGVRDNHALRHKLFQIDYLTTLSNQAVVSLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + LD+ WRE A LRDAL A+ + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E Sbjct: 126 KKLDEEWREAATALRDALRAQGLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+ MLEW L TK +GDLLELYCGNGNFSL LAR+F+RVLA EIAKPSV Sbjct: 186 NSFTQPNAAMNIQMLEWALEVTKDSKGDLLELYCGNGNFSLALARNFNRVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAANH++NV+I+RM+++EFTQAM REFNRL+ ID+ Y+ +TIFVDPPRSGL Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKRYQCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D T MVQAYP ILYISCNP++LC++L LS THT+ RLALFDQFPYT HMECGVLL Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHTVSRLALFDQFPYTHHMECGVLLTA 365 Query: 365 K 365 K Sbjct: 366 K 366 >gi|312170705|emb|CBX78968.1| tRNA (uracil-5-)-methyltransferase [Erwinia amylovora ATCC BAA-2158] Length = 367 Score = 455 bits (1170), Expect = e-126, Method: Composition-based stats. Identities = 237/361 (65%), Positives = 287/361 (79%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L I+QYE QL EKV RL MM AF VP +++FRS HYRMRAEF IWH+GDDLYHI+FD Sbjct: 6 LPIEQYEDQLTEKVTRLTSMMSAFNVPEVEVFRSAVSHYRMRAEFRIWHEGDDLYHIIFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 Q+T+ER+R+D F S LIN LM ++ +R + +LR KLFQIDYL++ S Q +V+++YH Sbjct: 66 QRTRERIRVDSFPAASELINRLMPRLINRLRDQHVLRFKLFQIDYLSTVSGQMVVSMLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 R LD+ W+ A LRD L A + + LIGRA KTKICLD+DYVDERLTV GR + YRQ+E Sbjct: 126 RKLDEEWQRAATALRDGLRAEGFDLHLIGRATKTKICLDQDYVDERLTVDGREMTYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +NV MLEW L +T+ GDLLELYCGNGNFSL LAR+F+RVLA EIAKPSV Sbjct: 186 NSFTQPNAAVNVKMLEWALDSTRNASGDLLELYCGNGNFSLALARNFNRVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 +A+YNIA N ++NV+I+RM+++EFTQAM ER F RL+ ID+ SY+ +TIFVDPPRSGL Sbjct: 246 ASAQYNIAVNQIDNVQIIRMAAEEFTQAMNGERRFKRLEGIDLTSYQCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 DD TV MVQAYP ILYISCNP +LC +L+ LSTTH I RLALFDQFPYT HMECGVLL R Sbjct: 306 DDETVKMVQAYPCILYISCNPQTLCDNLATLSTTHDITRLALFDQFPYTHHMECGVLLTR 365 Query: 365 K 365 + Sbjct: 366 R 366 >gi|322834974|ref|YP_004215001.1| tRNA (uracil-5-)-methyltransferase [Rahnella sp. Y9602] gi|321170175|gb|ADW75874.1| tRNA (uracil-5-)-methyltransferase [Rahnella sp. Y9602] Length = 366 Score = 455 bits (1170), Expect = e-126, Method: Composition-based stats. Identities = 228/361 (63%), Positives = 275/361 (76%) Query: 4 TLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63 L I+ Y+ QLAEK RL MM + P +FRS HYRMRAEF +WHD DLYHIMF Sbjct: 5 NLPIEHYDDQLAEKTARLTAMMSPYNAPQPDVFRSPVSHYRMRAEFRVWHDEGDLYHIMF 64 Query: 64 DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIY 123 DQQTK R+R+D F S LIN LM +++A I+ +P LR K+FQIDYL+++S + I +L+Y Sbjct: 65 DQQTKARVRVDQFPTASELINRLMPKLIAAIKQDPALRRKIFQIDYLSTRSGKIIASLLY 124 Query: 124 HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQI 183 HR LDD W++ A LRD L A + IQLIGRA KTKI LD+DYVDE L VAGR +IYRQ+ Sbjct: 125 HRKLDDEWQQAATALRDQLRADGFDIQLIGRAAKTKIMLDQDYVDEVLPVAGRDMIYRQV 184 Query: 184 ENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 ENSFTQPNA +N+ MLEW L AT+ GDLLELYCGNGNFSL LAR+F RVLA EIAKPS Sbjct: 185 ENSFTQPNAEMNIQMLEWALKATENSTGDLLELYCGNGNFSLALARNFRRVLATEIAKPS 244 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 V AA++NIAANH++NV+I+RM++++FTQA+ REF RL+DID+ Y TIFVDPPRSG Sbjct: 245 VTAAQFNIAANHIDNVQIIRMAAEDFTQALNGVREFRRLQDIDLSGYECNTIFVDPPRSG 304 Query: 304 LDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363 LDD TV MV Y ILYISCNP++LC +L LS TH + RLALFDQFPYT HME GVLL Sbjct: 305 LDDETVKMVAGYDRILYISCNPETLCANLETLSKTHRVTRLALFDQFPYTHHMESGVLLE 364 Query: 364 R 364 + Sbjct: 365 K 365 >gi|300714766|ref|YP_003739569.1| tRNA (Uracil-5-)-methyltransferase [Erwinia billingiae Eb661] gi|299060602|emb|CAX57709.1| tRNA (Uracil-5-)-methyltransferase [Erwinia billingiae Eb661] Length = 366 Score = 455 bits (1170), Expect = e-126, Method: Composition-based stats. Identities = 231/361 (63%), Positives = 289/361 (80%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L I+ Y+ QL EKV RL+ +M F P + +FRS HYRMRAEF +WH+GDDLYHI+FD Sbjct: 6 LPIEHYDAQLEEKVTRLQTLMTPFAAPEVDVFRSPVSHYRMRAEFRLWHEGDDLYHIIFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQT+ER+R+D F S LINALM ++A +R LR KLFQ+DYL++ S+Q +V+++YH Sbjct: 66 QQTRERIRVDSFPAASQLINALMPRLIAAVRDNKTLRHKLFQVDYLSTLSNQIVVSMLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 R L + W++ A LRDAL A + +QLIGRA KTKICLDRDYVDE L VAG+ +IYRQ+E Sbjct: 126 RALTEEWQQEAEALRDALRAEGFDLQLIGRATKTKICLDRDYVDECLPVAGKDIIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+ MLEW L TK GDLLELYCGNGNFSL LAR+F+RVLA EIAKPSV Sbjct: 186 NSFTQPNAAMNIQMLEWALEVTKDSSGDLLELYCGNGNFSLALARNFNRVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 +A+YNIA N+++NV+I+RMS++EFT+AM+ +R+F RL+ ID+ SY+ +TIFVDPPRSGL Sbjct: 246 ASAQYNIAVNNIDNVQIIRMSAEEFTEAMKGKRQFRRLEGIDLQSYQCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D TV MVQAYP ILYISCNP +LC +L+ LS THT+E+LALFDQFPYT HMECGVLL R Sbjct: 306 DADTVKMVQAYPRILYISCNPQTLCENLATLSETHTVEKLALFDQFPYTHHMECGVLLTR 365 Query: 365 K 365 + Sbjct: 366 R 366 >gi|168237752|ref|ZP_02662810.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194737076|ref|YP_002117041.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197249955|ref|YP_002149050.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|226705985|sp|B5F0V3|TRMA_SALA4 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|226705992|sp|B4TQI0|TRMA_SALSV RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|194712578|gb|ACF91799.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197213658|gb|ACH51055.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197289385|gb|EDY28750.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] Length = 366 Score = 455 bits (1170), Expect = e-126, Method: Composition-based stats. Identities = 241/359 (67%), Positives = 285/359 (79%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L +QYE QLAEKV RL+ MM F ++FRS HYRMRAEF +WHDGDDLYHIMFD Sbjct: 6 LPTEQYEAQLAEKVARLQSMMAPFSGLVPEVFRSPVSHYRMRAEFRLWHDGDDLYHIMFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTK R+R+D F S LIN LM M+A +R LR KLFQIDYLT+ S+QA+V+L+YH Sbjct: 66 QQTKSRIRVDTFPAASQLINTLMKAMIAGVRDNHALRHKLFQIDYLTTLSNQAVVSLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + LD+ WRE A LRDAL A+ + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E Sbjct: 126 KKLDEEWREAATALRDALRAQGLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+ MLEW L TK +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV Sbjct: 186 NSFTQPNAAMNIQMLEWALEVTKDSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAANH++NV+I+RM+++EFTQAM REFNRL+ ID+ Y+ +TIFVDPPRSGL Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKRYQCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363 D T MVQAYP ILYISCNP++LC++L LS THT+ RLALFDQFPYT HMECGVLL Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHTVSRLALFDQFPYTHHMECGVLLT 364 >gi|16767393|ref|NP_463008.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|62182588|ref|YP_219005.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|167991710|ref|ZP_02572809.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168233071|ref|ZP_02658129.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168821519|ref|ZP_02833519.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194469976|ref|ZP_03075960.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|197261617|ref|ZP_03161691.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|198243648|ref|YP_002218056.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205354295|ref|YP_002228096.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207859318|ref|YP_002245969.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|17865778|sp|P22038|TRMA_SALTY RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|75479266|sp|Q57H88|TRMA_SALCH RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|226705986|sp|B5FPX9|TRMA_SALDC RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|226705987|sp|B5QXR0|TRMA_SALEP RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|226705988|sp|B5REZ3|TRMA_SALG2 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|16422696|gb|AAL22967.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|62130221|gb|AAX67924.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|194456340|gb|EDX45179.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|197239872|gb|EDY22492.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197938164|gb|ACH75497.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205274076|emb|CAR39083.1| tRNA (uracil-5)-methyltransferase [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205330014|gb|EDZ16778.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205332855|gb|EDZ19619.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205341900|gb|EDZ28664.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|206711121|emb|CAR35495.1| tRNA (uracil-5)-methyltransferase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|261249244|emb|CBG27106.1| tRNA (uracil-5)-methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267996435|gb|ACY91320.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301160635|emb|CBW20166.1| tRNA (uracil-5)-methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312915245|dbj|BAJ39219.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320088533|emb|CBY98292.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321225421|gb|EFX50479.1| tRNA Uracil54-C5--methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322717089|gb|EFZ08660.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323132474|gb|ADX19904.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|326625849|gb|EGE32194.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326629419|gb|EGE35762.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] gi|332990957|gb|AEF09940.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 366 Score = 454 bits (1169), Expect = e-126, Method: Composition-based stats. Identities = 240/359 (66%), Positives = 285/359 (79%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L +QYE QLAEKV RL+ MM F ++FRS HYRMRAEF +WHDGDDLYHIMFD Sbjct: 6 LPTEQYEAQLAEKVARLQSMMAPFSGLVPEVFRSPVSHYRMRAEFRLWHDGDDLYHIMFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTK R+R+D F S LIN LM M+A +R LR KLFQIDYLT+ S+QA+V+L+YH Sbjct: 66 QQTKSRIRVDTFPAASQLINTLMKAMIAGVRDNHALRHKLFQIDYLTTLSNQAVVSLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + LD+ WRE A LRDAL A+ + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E Sbjct: 126 KKLDEEWREAATALRDALRAQGLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+ MLEW L TK +GDLLELYCGNGNFSL LAR+F+RVLA EIAKPSV Sbjct: 186 NSFTQPNAAMNIQMLEWALEVTKDSKGDLLELYCGNGNFSLALARNFNRVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAANH++NV+I+RM+++EFTQAM REFNRL+ ID+ Y+ +TIFVDPPRSGL Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKRYQCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363 D T MVQAYP ILYISCNP++LC++L LS THT+ RLALFDQFPYT HMECGVLL Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHTVSRLALFDQFPYTHHMECGVLLT 364 >gi|167551369|ref|ZP_02345124.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205323670|gb|EDZ11509.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 366 Score = 454 bits (1169), Expect = e-126, Method: Composition-based stats. Identities = 240/359 (66%), Positives = 285/359 (79%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L +QYE QLAEKV RL+ MM F ++FRS HYRMRAEF +WHDGDDLYHIMFD Sbjct: 6 LPTEQYEAQLAEKVARLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRLWHDGDDLYHIMFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTK R+R+D F S LIN LM M+A +R LR KLFQIDYLT+ S+QA+V+L+YH Sbjct: 66 QQTKSRIRVDTFPAASQLINTLMKAMIAGVRDNHALRHKLFQIDYLTTLSNQAVVSLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + LD+ WRE A LRDAL A+ + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E Sbjct: 126 KKLDEEWREAATALRDALRAQGLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+ MLEW L TK +GDLLELYCGNGNFSL LAR+F+RVLA EIAKPSV Sbjct: 186 NSFTQPNAAMNIQMLEWALEVTKDSKGDLLELYCGNGNFSLALARNFNRVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAANH++NV+I+RM+++EFTQAM REFNRL+ ID+ Y+ +TIFVDPPRSGL Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKRYQCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363 D T MVQAYP ILYISCNP++LC++L LS THT+ RLALFDQFPYT HMECGVLL Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLKTLSQTHTVSRLALFDQFPYTHHMECGVLLT 364 >gi|56415966|ref|YP_153041.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197364893|ref|YP_002144530.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|81599682|sp|Q5PK68|TRMA_SALPA RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|226705991|sp|B5BJN9|TRMA_SALPK RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|56130223|gb|AAV79729.1| tRNA (uracil-5)-methyltransferase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197096370|emb|CAR61975.1| tRNA (uracil-5)-methyltransferase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 366 Score = 454 bits (1168), Expect = e-126, Method: Composition-based stats. Identities = 240/359 (66%), Positives = 285/359 (79%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L +QYE QLAEKV RL+ MM F ++FRS HYRMRAEF +WHDGDDLYHIMFD Sbjct: 6 LPTEQYEAQLAEKVARLQSMMAPFSGLVPEVFRSPVSHYRMRAEFRLWHDGDDLYHIMFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTK R+R+D F S LIN LM M+A +R LR KLFQIDYLT+ S+QA+V+L+YH Sbjct: 66 QQTKSRIRVDTFPAASQLINTLMKAMIAGVRDNHALRHKLFQIDYLTTLSNQAVVSLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + LD+ WRE A LRDAL A+ + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E Sbjct: 126 KKLDEEWREAATALRDALRAQGLNVHLIGRATKTKIELDQDYIDERLPVAGKEIIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+ MLEW L TK +GDLLELYCGNGNFSL LAR+F+RVLA EIAKPSV Sbjct: 186 NSFTQPNAAMNIQMLEWALEVTKDSKGDLLELYCGNGNFSLALARNFNRVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAANH++NV+I+RM+++EFTQAM REFNRL+ ID+ Y+ +TIFVDPPRSGL Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKRYQCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363 D T MVQAYP ILYISCNP++LC++L LS THT+ RLALFDQFPYT HMECGVLL Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHTVSRLALFDQFPYTHHMECGVLLT 364 >gi|161617272|ref|YP_001591237.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|189036044|sp|A9N0H5|TRMA_SALPB RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|161366636|gb|ABX70404.1| hypothetical protein SPAB_05114 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] Length = 366 Score = 454 bits (1168), Expect = e-125, Method: Composition-based stats. Identities = 240/359 (66%), Positives = 285/359 (79%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L +QYE QLAEKV RL+ MM F ++FRS HYRMRAEF +WHDGDDLYHIMFD Sbjct: 6 LPTEQYEAQLAEKVSRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRLWHDGDDLYHIMFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTK R+R+D F S LIN LM M+A +R LR KLFQIDYLT+ S+QA+V+L+YH Sbjct: 66 QQTKSRIRVDTFPAASQLINTLMKAMIAGVRDNHALRHKLFQIDYLTTLSNQAVVSLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + LD+ WRE A LRDAL A+ + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E Sbjct: 126 KKLDEEWREAATALRDALRAQGLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+ MLEW L TK +GDLLELYCGNGNFSL LAR+F+RVLA EIAKPSV Sbjct: 186 NSFTQPNAAMNIQMLEWALEVTKDSKGDLLELYCGNGNFSLALARNFNRVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAANH++NV+I+RM+++EFTQAM REFNRL+ ID+ Y+ +TIFVDPPRSGL Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKRYQCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363 D T MVQAYP ILYISCNP++LC++L LS THT+ RLALFDQFPYT HMECGVLL Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHTVSRLALFDQFPYTHHMECGVLLT 364 >gi|16762314|ref|NP_457931.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29143802|ref|NP_807144.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213427062|ref|ZP_03359812.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213584060|ref|ZP_03365886.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213646314|ref|ZP_03376367.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|289830047|ref|ZP_06547496.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|20178149|sp|Q8Z313|TRMA_SALTI RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|25512146|pir||AC0935 tRNA (uracil-5)-methyltransferase [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16504618|emb|CAD09501.1| tRNA (uracil-5)-methyltransferase [Salmonella enterica subsp. enterica serovar Typhi] gi|29139437|gb|AAO71004.1| tRNA (uracil-5)-methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 366 Score = 454 bits (1168), Expect = e-125, Method: Composition-based stats. Identities = 239/359 (66%), Positives = 285/359 (79%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L +QYE QLAEKV RL+ MM F ++FRS HYRMRAEF +WHDGD+LYHIMFD Sbjct: 6 LPTEQYEAQLAEKVARLQSMMAPFSGLVPEVFRSPVSHYRMRAEFRLWHDGDNLYHIMFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTK R+R+D F S LIN LM M+A +R LR KLFQIDYLT+ S+QA+V+L+YH Sbjct: 66 QQTKSRIRVDTFPAASQLINTLMKAMIAGVRDNHALRHKLFQIDYLTTLSNQAVVSLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + LD+ WRE A LRDAL A+ + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E Sbjct: 126 KKLDEEWREAATALRDALRAQGLNVHLIGRATKTKIELDQDYIDERLPVAGKEIIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+ MLEW L TK +GDLLELYCGNGNFSL LAR+F+RVLA EIAKPSV Sbjct: 186 NSFTQPNAAMNIQMLEWALEVTKDSKGDLLELYCGNGNFSLALARNFNRVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAANH++NV+I+RM+++EFTQAM REFNRL+ ID+ Y+ +TIFVDPPRSGL Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKRYQCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363 D T MVQAYP ILYISCNP++LC++L LS THT+ RLALFDQFPYT HMECGVLL Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHTVSRLALFDQFPYTHHMECGVLLT 364 >gi|322613117|gb|EFY10061.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322619255|gb|EFY16138.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322626121|gb|EFY22933.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322626419|gb|EFY23225.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322632467|gb|EFY29215.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322635050|gb|EFY31771.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322642747|gb|EFY39337.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322646428|gb|EFY42939.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322648557|gb|EFY45007.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322654818|gb|EFY51136.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322657285|gb|EFY53565.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322662228|gb|EFY58443.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322669771|gb|EFY65915.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322672034|gb|EFY68149.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322675755|gb|EFY71827.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322681829|gb|EFY77855.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322683976|gb|EFY79985.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323193247|gb|EFZ78462.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323197605|gb|EFZ82738.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323202191|gb|EFZ87246.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323207174|gb|EFZ92126.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323211376|gb|EFZ96217.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323218579|gb|EGA03287.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323220939|gb|EGA05371.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323226064|gb|EGA10282.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323231595|gb|EGA15707.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323236903|gb|EGA20974.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323239423|gb|EGA23472.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323243984|gb|EGA27995.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323249347|gb|EGA33264.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323250410|gb|EGA34293.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323258864|gb|EGA42516.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323260888|gb|EGA44488.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323265228|gb|EGA48725.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323270450|gb|EGA53896.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 366 Score = 454 bits (1168), Expect = e-125, Method: Composition-based stats. Identities = 241/359 (67%), Positives = 285/359 (79%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L +QYE QLAEKV RL+ MM F ++FRS HYRMRAEF +WHDGDDLYHIMFD Sbjct: 6 LPTEQYEAQLAEKVARLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRLWHDGDDLYHIMFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTK R+R+D F S LIN LM M+A +R LR KLFQIDYLT+ S+QA+V+L+YH Sbjct: 66 QQTKSRIRVDTFPAASQLINTLMKAMIAGVRDNHALRHKLFQIDYLTTLSNQAVVSLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + LD+ WRE A LRDAL A+ + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E Sbjct: 126 KKLDEEWREAATALRDALRAQGLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+ MLEW L TK +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV Sbjct: 186 NSFTQPNAAMNIQMLEWALEVTKDSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAANH++NV+I+RM+++EFTQAM REFNRL+ ID+ Y+ +TIFVDPPRSGL Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKRYQCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363 D T MVQAYP ILYISCNP++LC++L LS THT+ RLALFDQFPYT HMECGVLL Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHTVSRLALFDQFPYTHHMECGVLLT 364 >gi|123440536|ref|YP_001004530.1| tRNA (uracil-5-)-methyltransferase [Yersinia enterocolitica subsp. enterocolitica 8081] gi|262827716|sp|A1JI40|TRMA_YERE8 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|122087497|emb|CAL10278.1| tRNA (uracil-5)-methyltransferase [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 367 Score = 454 bits (1167), Expect = e-125, Method: Composition-based stats. Identities = 241/362 (66%), Positives = 285/362 (78%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L D YE QLAEK RL+ MM FQ P +IFRS HYRMRAEF +WHD DDLYHIMFD Sbjct: 6 LPTDGYEHQLAEKSARLQAMMSPFQAPAAEIFRSPAEHYRMRAEFRVWHDEDDLYHIMFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTK R+R++ F SLLIN LM +M IR EP+LR KLFQIDYL++ S + + TL+YH Sbjct: 66 QQTKLRIRVEQFPVASLLINRLMSALMTAIRAEPILRHKLFQIDYLSTLSGKLLATLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 R LD+ W++ A LRD L + + +QLIGRA+KTKI LD DY+DE L VAGR +IYRQ+E Sbjct: 126 RPLDEEWQQKARELRDQLREQGFDLQLIGRASKTKIMLDHDYIDEVLPVAGRDMIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+HMLEW + T+ GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV Sbjct: 186 NSFTQPNAAVNIHMLEWAIDVTQHASGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAANH++NV+I+RMS++EFTQAM+ REFNRLK ID+ SY +TIFVDPPRSGL Sbjct: 246 AAAQYNIAANHIDNVQIIRMSAEEFTQAMQGVREFNRLKGIDLTSYNCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 DD TV +VQAYP ILYISCNP++LC +L L TH I RLALFDQFPYT HMECGVLL + Sbjct: 306 DDETVKLVQAYPRILYISCNPETLCANLEQLQYTHKISRLALFDQFPYTHHMECGVLLEK 365 Query: 365 KP 366 + Sbjct: 366 RD 367 >gi|300948246|ref|ZP_07162365.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 116-1] gi|300452224|gb|EFK15844.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 116-1] Length = 360 Score = 454 bits (1167), Expect = e-125, Method: Composition-based stats. Identities = 241/355 (67%), Positives = 286/355 (80%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L +QYE QLAEKV RL+ MM F ++FRS HYRMRAEF IWHDGDDLYHI+FD Sbjct: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTK R+R+D F S LIN LM M+A +R P+LR KLFQIDYLT+ S+QA+V+L+YH Sbjct: 66 QQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + LDD WR+ A LRDAL A+ + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E Sbjct: 126 KKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+ MLEW L TKG +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAANH++NV+I+RM+++EFTQAM REFNRL+ ID+ SY+ +TIFVDPPRSGL Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359 D T MVQAYP ILYISCNP++LC++L LS TH +ERLALFDQFPYT HMECG Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECG 360 >gi|238754702|ref|ZP_04616054.1| tRNA (uracil-5-)-methyltransferase [Yersinia ruckeri ATCC 29473] gi|238707010|gb|EEP99375.1| tRNA (uracil-5-)-methyltransferase [Yersinia ruckeri ATCC 29473] Length = 367 Score = 453 bits (1166), Expect = e-125, Method: Composition-based stats. Identities = 234/362 (64%), Positives = 284/362 (78%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L + Y+ QLAEK+ L++MM F+ P ++FRS HYRMRAEF +WHD DDLYHIMFD Sbjct: 6 LPTENYDHQLAEKIASLKEMMSPFKAPEPEVFRSPAEHYRMRAEFRVWHDEDDLYHIMFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 Q TK+R+R++ F S+LIN LM +M IR +P+LR KLFQIDYL+++S + I +L+YH Sbjct: 66 QHTKQRIRVEQFPVASVLINRLMSALMTAIRAQPILRRKLFQIDYLSTRSGKIIASLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 R LD+ W++ AI LRD L + +QLIGRA KTKI LD DYVDE L VAGR +IYRQ+E Sbjct: 126 RQLDEEWQQHAIALRDQLRTEGFDLQLIGRAAKTKIMLDNDYVDEILPVAGRDMIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+HMLEW L TK GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV Sbjct: 186 NSFTQPNAAVNIHMLEWALDVTKDASGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA++NIAANH++NV+I+RMS++EFTQAM+ REFNRLK ID+ SY +TIFVDPPRSGL Sbjct: 246 AAAQFNIAANHIDNVQIIRMSAEEFTQAMQGVREFNRLKGIDLQSYHCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 DD T+ MVQ YP ILYISCNP++L +L L THTI RLALFDQFPYT HMECGV L + Sbjct: 306 DDETIKMVQGYPRILYISCNPETLSANLEQLQHTHTISRLALFDQFPYTHHMECGVWLEK 365 Query: 365 KP 366 + Sbjct: 366 RD 367 >gi|332998875|gb|EGK18469.1| tRNA (uracil-5-)-methyltransferase [Shigella flexneri K-218] Length = 362 Score = 453 bits (1166), Expect = e-125, Method: Composition-based stats. Identities = 243/361 (67%), Positives = 288/361 (79%), Gaps = 4/361 (1%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L +QYE QLAEKV RL+ MM F ++FRS HYRMRAEF IWHDGDDLYHI+FD Sbjct: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTK R+R+D F S LIN LM M+A +R P+LR KLFQIDYLT+ S+QA+V+L+YH Sbjct: 66 QQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + LDD WR+ A LR A+ + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E Sbjct: 126 KKLDDEWRQEAEALR----AQNLNVHLIGRATKTKIALDQDYIDERLPVAGKEMIYRQVE 181 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+ MLEW L TKG +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV Sbjct: 182 NSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 241 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAANH++NV+I+RM+++EFTQAM REFNRL+ ID+ SY+F+TIFVDPPRSGL Sbjct: 242 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQFETIFVDPPRSGL 301 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D T MVQAYP ILYISCNP++LC++L LS TH +ERLALFDQFPYT HMECGVLL Sbjct: 302 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTA 361 Query: 365 K 365 K Sbjct: 362 K 362 >gi|259906846|ref|YP_002647202.1| tRNA (uracil-5-)-methyltransferase [Erwinia pyrifoliae Ep1/96] gi|224962468|emb|CAX53923.1| tRNA (Uracil-5-)-methyltransferase [Erwinia pyrifoliae Ep1/96] gi|283476638|emb|CAY72466.1| tRNA (uracil-5-)-methyltransferase [Erwinia pyrifoliae DSM 12163] Length = 367 Score = 453 bits (1166), Expect = e-125, Method: Composition-based stats. Identities = 236/361 (65%), Positives = 287/361 (79%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L I+QYE QL EKV RL MM AF P +++FRS HYRMRAEF IWH+GDDLYHI+FD Sbjct: 6 LPIEQYEDQLTEKVTRLTSMMSAFNAPEVEVFRSAVSHYRMRAEFRIWHEGDDLYHIIFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQT+ER+R+D F S LIN LM ++ IR + +LR KLFQIDYL++ S Q +V+++YH Sbjct: 66 QQTRERIRVDNFPAASELINRLMPRLIDRIRDQRVLRFKLFQIDYLSTVSGQMVVSMLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 R LD+ W++ A LRD+L A + + LIGRA KTKICLD+DYVDERLTV G + YRQ+E Sbjct: 126 RKLDEEWQQAAKALRDSLRAEGFDLHLIGRATKTKICLDQDYVDERLTVDGHEITYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +NV MLEW L +T+ +GDLLELYCGNGNFSL LAR+F+RVLA EIAKPSV Sbjct: 186 NSFTQPNAAVNVKMLEWALDSTRHARGDLLELYCGNGNFSLALARNFNRVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 +A+YNIA N + NV+I+RM+++EFTQAM ER F RL+ ID+ SY+ +T+FVDPPRSGL Sbjct: 246 ASAQYNIAVNQIENVQIIRMAAEEFTQAMNGERRFKRLEGIDLTSYQCETLFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 DD TV MVQAYP ILYISCNP +LC +L+ LSTTH I RLALFDQFPYT HMECGVLL R Sbjct: 306 DDETVKMVQAYPRILYISCNPQTLCDNLATLSTTHDITRLALFDQFPYTHHMECGVLLTR 365 Query: 365 K 365 + Sbjct: 366 R 366 >gi|194442689|ref|YP_002043391.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|226705990|sp|B4T0X5|TRMA_SALNS RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|194401352|gb|ACF61574.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Newport str. SL254] Length = 366 Score = 453 bits (1165), Expect = e-125, Method: Composition-based stats. Identities = 238/359 (66%), Positives = 284/359 (79%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L +QYE QLAEKV RL+ MM F ++FRS HYRMRAEF +WHDGDDLYHIMFD Sbjct: 6 LPTEQYEAQLAEKVARLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRLWHDGDDLYHIMFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTK R+R+D F S LIN LM M+A +R LR KLFQ+DYLT+ S+QA+V+L+YH Sbjct: 66 QQTKSRIRVDTFPAASQLINTLMKAMIAGVRDNHALRHKLFQMDYLTTLSNQAVVSLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + LD+ WRE A LRDAL A+ + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E Sbjct: 126 KKLDEEWREAATALRDALRAQGLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+ MLEW L TK +GDLLELYCGNGNFSL LAR+F+RVLA EIAKPSV Sbjct: 186 NSFTQPNAAMNIQMLEWALEVTKDSKGDLLELYCGNGNFSLALARNFNRVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAANH++NV+I+RM+++EFT AM REFNRL+ ID+ Y+ +TIFVDPPRSGL Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTLAMNGVREFNRLQGIDLKGYQCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363 D T MVQAYP ILYISCNP++LC++L LS THT+ RLALFDQFPYT HMECGVLL Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHTVSRLALFDQFPYTHHMECGVLLT 364 >gi|238785773|ref|ZP_04629745.1| tRNA (uracil-5-)-methyltransferase [Yersinia bercovieri ATCC 43970] gi|238713307|gb|EEQ05347.1| tRNA (uracil-5-)-methyltransferase [Yersinia bercovieri ATCC 43970] Length = 367 Score = 453 bits (1165), Expect = e-125, Method: Composition-based stats. Identities = 239/362 (66%), Positives = 286/362 (79%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L D Y+ QLAEK RL+ MML FQ P +IFRS HYRMRAEF +WHD DDLYHIMFD Sbjct: 6 LPTDGYDHQLAEKSARLQAMMLPFQAPAPEIFRSPAEHYRMRAEFRVWHDDDDLYHIMFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTK+R+R++ F SLLIN LM +M IR EP+LR KLFQIDYL++ S + I +L+YH Sbjct: 66 QQTKQRIRVEQFPVASLLINRLMSALMTAIRAEPILRRKLFQIDYLSTLSGKLIASLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 R LD+ W++ A+ LRD L + + +QLIGRA KTKI LD DY+DE L VAGR +IYRQ+E Sbjct: 126 RQLDEEWQQKALELRDQLREQGFDLQLIGRAAKTKIMLDHDYIDEVLPVAGREMIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+HMLEW + T+ GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV Sbjct: 186 NSFTQPNAAVNIHMLEWAIDVTQHASGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAAN+++NV+I+RMS++EFTQAM+ REF RLK ID+ SY +TIFVDPPRSGL Sbjct: 246 AAAQYNIAANNIDNVQIIRMSAEEFTQAMQGVREFTRLKGIDLKSYNCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 DD TV +VQAYP ILYISCNP++LC +L L TH I RLALFDQFPYT HMECGVLL + Sbjct: 306 DDETVKLVQAYPRILYISCNPETLCANLEQLQHTHKISRLALFDQFPYTHHMECGVLLEK 365 Query: 365 KP 366 + Sbjct: 366 RD 367 >gi|37528553|ref|NP_931898.1| tRNA (uracil-5-)-methyltransferase [Photorhabdus luminescens subsp. laumondii TTO1] gi|50401483|sp|Q7MAX6|TRMA_PHOLL RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|36787991|emb|CAE17108.1| tRNA (Uracil-5-)-methyltransferase [Photorhabdus luminescens subsp. laumondii TTO1] Length = 366 Score = 452 bits (1164), Expect = e-125, Method: Composition-based stats. Identities = 227/364 (62%), Positives = 287/364 (78%) Query: 1 MSGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60 M L + YEQQL EKV RL+ MM FQ P ++FRS HYRMRAEF IWH+ DDLYH Sbjct: 1 MQNLLPTESYEQQLTEKVSRLKNMMAPFQPPRPEVFRSPLSHYRMRAEFRIWHEQDDLYH 60 Query: 61 IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVT 120 IMFDQQTK+R+R+ F S LIN +M+ ++ +IR E +L KLFQIDYL++ S++ +V+ Sbjct: 61 IMFDQQTKQRIRLVQFPVASKLINKMMVVLIDSIRSEQILCHKLFQIDYLSTCSNKILVS 120 Query: 121 LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIY 180 L+YH+ L + W + A+RLR+AL + + ++LIGRA KTKI LD DY+DE L VAGR +IY Sbjct: 121 LLYHKKLGEEWTQQALRLREALRHKGFDVELIGRAAKTKITLDHDYIDEVLPVAGRKMIY 180 Query: 181 RQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240 RQ+ENSFTQPNA +N+HMLEW + TK +GDLLELYCGNGNFSL LA++F+RVLA EIA Sbjct: 181 RQVENSFTQPNASVNIHMLEWAINITKDSKGDLLELYCGNGNFSLALAQNFERVLATEIA 240 Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300 KPSV AA+YNI AN ++NV+I+RMS++EFTQAM EREFNRL+ I++ SY+ +TIFVDPP Sbjct: 241 KPSVAAAQYNITANGIDNVQIIRMSAEEFTQAMNGEREFNRLQGINLKSYQCETIFVDPP 300 Query: 301 RSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360 RSGLD+ T+ MV+AYP ILYISCNP++LC +L L+ TH I LALFDQFPYT HMECGV Sbjct: 301 RSGLDEKTLEMVRAYPRILYISCNPETLCHNLETLTQTHKISHLALFDQFPYTHHMECGV 360 Query: 361 LLVR 364 LL + Sbjct: 361 LLEK 364 >gi|238789624|ref|ZP_04633408.1| tRNA (uracil-5-)-methyltransferase [Yersinia frederiksenii ATCC 33641] gi|238722377|gb|EEQ14033.1| tRNA (uracil-5-)-methyltransferase [Yersinia frederiksenii ATCC 33641] Length = 367 Score = 452 bits (1164), Expect = e-125, Method: Composition-based stats. Identities = 237/362 (65%), Positives = 287/362 (79%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L D Y+ QLAEK RL+ MM FQ P ++FRS HYRMRAEF +WHD DDLYHIMFD Sbjct: 6 LPTDGYDHQLAEKSARLQAMMSPFQAPAPEVFRSPAEHYRMRAEFRVWHDEDDLYHIMFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTK+R+R++ F S+LIN LM +M IR EP+LR KLFQIDYL++ S + I +L+YH Sbjct: 66 QQTKQRIRVEQFPVASVLINRLMSALMTAIRAEPILRRKLFQIDYLSTLSGKLIASLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 R LD+ W++ A+ LRD L + + +QLIGRA+KTKI LD DY+DE L VAGR +IYRQ+E Sbjct: 126 RQLDEEWQQKALELRDQLREQGFDLQLIGRASKTKIMLDHDYIDEVLPVAGREMIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+HMLEW + T+ GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV Sbjct: 186 NSFTQPNAAVNIHMLEWAIDVTQHASGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAAN+++NV+I+RMS++EFTQAM+ REFNRLK ID+ SY +TIFVDPPRSGL Sbjct: 246 AAAQYNIAANNIDNVQIIRMSAEEFTQAMQGVREFNRLKGIDLSSYNCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 DD TV +VQAYP ILYISCNP++LC +L L TH I RLALFDQFPYT HMECGVLL + Sbjct: 306 DDETVKLVQAYPRILYISCNPETLCANLEQLQHTHKISRLALFDQFPYTHHMECGVLLEQ 365 Query: 365 KP 366 + Sbjct: 366 RD 367 >gi|310766062|gb|ADP11012.1| tRNA (uracil-5-)-methyltransferase [Erwinia sp. Ejp617] Length = 367 Score = 452 bits (1163), Expect = e-125, Method: Composition-based stats. Identities = 235/363 (64%), Positives = 287/363 (79%) Query: 3 GTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIM 62 G L I+QYE QL EKV RL MM AF P +++FRS HYRMRAEF IWH+GDDLYHI+ Sbjct: 4 GQLPIEQYEDQLTEKVTRLTSMMSAFNAPEVEVFRSAVSHYRMRAEFRIWHEGDDLYHII 63 Query: 63 FDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122 FDQQT+ER+R+D F S LIN +M ++ IR + +LR KLFQIDYL++ S Q +V+++ Sbjct: 64 FDQQTRERIRVDSFPAASELINRVMPRLIDRIRDQRVLRFKLFQIDYLSTVSGQMVVSML 123 Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182 YHR LD+ W++ A LRD+L A + + LIGRA KTKICLD+DYVDERL V G + YRQ Sbjct: 124 YHRKLDEEWQQAATALRDSLRAEGFDLHLIGRATKTKICLDQDYVDERLIVDGHEMTYRQ 183 Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 +ENSFTQPNA +NV MLEW L +T+ +GDLLELYCGNGNFSL LAR+F+RVLA EIAKP Sbjct: 184 VENSFTQPNAAVNVKMLEWALDSTRHARGDLLELYCGNGNFSLALARNFNRVLATEIAKP 243 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302 SV +A+YNIA N + NV+I+RM+++EFTQAM ER F RL+ ID+ SY+ +T+FVDPPRS Sbjct: 244 SVASAQYNIAVNQIENVQIIRMAAEEFTQAMNGERRFKRLEGIDLTSYQCETLFVDPPRS 303 Query: 303 GLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362 GLDD TV MVQAYP ILYISCNP +LC +L+ LSTTH I RLALFDQFPYT HMECGVLL Sbjct: 304 GLDDETVKMVQAYPRILYISCNPQTLCDNLATLSTTHDITRLALFDQFPYTHHMECGVLL 363 Query: 363 VRK 365 R+ Sbjct: 364 TRR 366 >gi|212712482|ref|ZP_03320610.1| hypothetical protein PROVALCAL_03577 [Providencia alcalifaciens DSM 30120] gi|212684698|gb|EEB44226.1| hypothetical protein PROVALCAL_03577 [Providencia alcalifaciens DSM 30120] Length = 366 Score = 452 bits (1162), Expect = e-125, Method: Composition-based stats. Identities = 221/365 (60%), Positives = 284/365 (77%) Query: 1 MSGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60 M TL + Y+ QLAEKVDRL+ +M + P +IF S HYRMRAEF IWH+GDDL+H Sbjct: 2 MQNTLHTEDYQLQLAEKVDRLKSLMAPYAAPEPEIFSSPTSHYRMRAEFRIWHEGDDLFH 61 Query: 61 IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVT 120 IMFD++TKER+R+ F S LIN +M E++ ++ LLR KLFQIDYL++ S++ IV+ Sbjct: 62 IMFDKETKERIRMTSFPVASQLINDMMAELLPLLKRTELLRHKLFQIDYLSTLSNKLIVS 121 Query: 121 LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIY 180 L+YH+ L D W E A +L++ L A+ + +Q+IGRA+KTKI LD DYVDE L V G+ ++Y Sbjct: 122 LLYHKKLGDEWTEQAKQLKEDLVAKGFDVQIIGRASKTKIMLDHDYVDEILPVKGKDMVY 181 Query: 181 RQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240 RQ+ENSFTQPNA +N+ MLEW + AT+ GDLLELYCGNGNFSL LA++F++VLA EIA Sbjct: 182 RQVENSFTQPNAQVNIKMLEWAIDATQHSTGDLLELYCGNGNFSLALAQNFNKVLATEIA 241 Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300 KPSV AA+YNI AN +NNV+I+RMS+++FTQAM REFNRL+ I++ Y+ TIFVDPP Sbjct: 242 KPSVHAAQYNIEANKINNVQIIRMSAEDFTQAMNGVREFNRLEGINLADYQCNTIFVDPP 301 Query: 301 RSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360 RSGLDD TV +VQ Y HILYISCNP++LC +L+ L+ TH IE+LALFDQFPYT HME GV Sbjct: 302 RSGLDDKTVQLVQEYDHILYISCNPETLCDNLAELTKTHRIEKLALFDQFPYTHHMESGV 361 Query: 361 LLVRK 365 LL R+ Sbjct: 362 LLTRR 366 >gi|332159760|ref|YP_004296337.1| tRNA (uracil-5-)-methyltransferase [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325663990|gb|ADZ40634.1| tRNA (uracil-5-)-methyltransferase [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330861647|emb|CBX71825.1| tRNA (uracil-5-)-methyltransferase [Yersinia enterocolitica W22703] Length = 367 Score = 452 bits (1162), Expect = e-125, Method: Composition-based stats. Identities = 241/362 (66%), Positives = 285/362 (78%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L D YE QLAEK RL+ MM FQ P +IFRS HYRMRAEF +WHD DDLYHIMFD Sbjct: 6 LPTDGYEHQLAEKSARLQAMMSPFQAPAAEIFRSPAEHYRMRAEFRVWHDEDDLYHIMFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTK+R+R++ F SLLIN LM +M IR EP+LR KLFQIDYL++ S + + TL+YH Sbjct: 66 QQTKQRIRVEQFPVASLLINRLMSALMTAIRAEPILRRKLFQIDYLSTLSGKLLATLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 R LD+ W++ A L+D L + + +QLIGRA+KTKI LD DYVDE L VAGR +IYRQIE Sbjct: 126 RPLDEEWQQKARELQDQLREQGFDLQLIGRASKTKIMLDHDYVDEVLPVAGRDMIYRQIE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 N FTQPNA +N+HMLEW + T+ GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV Sbjct: 186 NCFTQPNAAVNIHMLEWAIDVTQHASGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAANH++NV+I+RMS++EFTQAM+ REFNRLK ID+ SY +TIFVDPPRSGL Sbjct: 246 AAAQYNIAANHIDNVQIIRMSAEEFTQAMQGVREFNRLKGIDLTSYNCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 DD TV +VQAYP ILYISCNP++LC +L L TH I RLALFDQFPYT HMECGVLL + Sbjct: 306 DDETVKLVQAYPRILYISCNPETLCANLEQLQHTHKISRLALFDQFPYTHHMECGVLLEK 365 Query: 365 KP 366 + Sbjct: 366 RD 367 >gi|261346835|ref|ZP_05974479.1| tRNA (uracil-5-)-methyltransferase [Providencia rustigianii DSM 4541] gi|282565014|gb|EFB70549.1| tRNA (uracil-5-)-methyltransferase [Providencia rustigianii DSM 4541] Length = 365 Score = 452 bits (1162), Expect = e-125, Method: Composition-based stats. Identities = 217/365 (59%), Positives = 284/365 (77%) Query: 1 MSGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60 M TL + YE QLAEK++RL+ +M + P ++F S HYRMRAEF IWHDGDDL+H Sbjct: 1 MQNTLHTEDYELQLAEKINRLKSLMAPYAAPEPEVFSSSKSHYRMRAEFRIWHDGDDLFH 60 Query: 61 IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVT 120 IMFD++TKER+RI+ F S LIN +M+E++ ++ LLR KLFQIDYL++ S++ I++ Sbjct: 61 IMFDKETKERIRIESFPVASQLINDMMVELLPLLKKSELLRHKLFQIDYLSTLSNKLIIS 120 Query: 121 LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIY 180 L+YH+ L D W A +L+ L A+ + +Q+IGRA+KTKI LD DYVDE L V G+ +IY Sbjct: 121 LLYHKKLGDEWITEAKQLKADLIAKGFDVQVIGRASKTKIMLDHDYVDEILPVNGKEMIY 180 Query: 181 RQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240 RQ+ENSFTQPNA +N+ MLEW + AT+ GDLLELYCGNGNFSL LA++F++VLA EIA Sbjct: 181 RQVENSFTQPNAQVNIKMLEWAINATQNSTGDLLELYCGNGNFSLALAQNFNKVLATEIA 240 Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300 KPSV+AA+YNI AN ++NV+I+RMS+++FTQAM+ REF RL I++ Y+ TIFVDPP Sbjct: 241 KPSVQAAQYNIEANKIDNVQIIRMSAEDFTQAMKGVREFRRLDGINLADYQCNTIFVDPP 300 Query: 301 RSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360 RSGLDD TV +VQ Y HILYISCNP++LC +L+ L+ TH +E+LALFDQFPYT HME GV Sbjct: 301 RSGLDDKTVQLVQEYDHILYISCNPETLCDNLAELTKTHKVEKLALFDQFPYTHHMESGV 360 Query: 361 LLVRK 365 LL R+ Sbjct: 361 LLTRR 365 >gi|188532302|ref|YP_001906099.1| tRNA (uracil-5-)-methyltransferase [Erwinia tasmaniensis Et1/99] gi|226705980|sp|B2VGA5|TRMA_ERWT9 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|188027344|emb|CAO95189.1| tRNA (uracil-5-)-methyltransferase [Erwinia tasmaniensis Et1/99] Length = 367 Score = 451 bits (1160), Expect = e-125, Method: Composition-based stats. Identities = 236/361 (65%), Positives = 288/361 (79%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L I+ YE QLAEKV RL MM AF P +++FRS HYRMRAEF IWH+GDDLYHI+FD Sbjct: 6 LPIEHYEDQLAEKVTRLTTMMSAFNAPEVEVFRSAVSHYRMRAEFRIWHEGDDLYHIIFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQT+ER+R+D F S LIN LM ++ IR + LLR KLFQ+DYL++ S Q +V+++YH Sbjct: 66 QQTRERIRVDSFPAASELINRLMPRLIEKIRDQRLLRFKLFQVDYLSTVSGQIVVSMLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 R LD+ W++ A LRD+L A + + LIGRA KTKICLD+DYVDERLTV GR ++YRQ+E Sbjct: 126 RKLDEEWQQAAAALRDSLRAEGFDLHLIGRATKTKICLDQDYVDERLTVDGREMVYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +NV MLEW L +T+ GDLLELYCGNGNFSL LAR+F+RVLA EIAKPSV Sbjct: 186 NSFTQPNAAVNVKMLEWALDSTRHSAGDLLELYCGNGNFSLALARNFNRVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 +A+YNIA N ++NV+I+RM+++EFTQAM ER F RL+ ID+ Y+ +TIFVDPPRSGL Sbjct: 246 ASAQYNIAVNQIDNVQIIRMAAEEFTQAMNGERSFRRLEGIDLTRYQCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 DD TV MVQAYP ILYISCNP +LC +L+ LSTTH + RLALFDQFPYT HMECGVLL R Sbjct: 306 DDETVKMVQAYPRILYISCNPQTLCENLTALSTTHDVTRLALFDQFPYTHHMECGVLLTR 365 Query: 365 K 365 + Sbjct: 366 R 366 >gi|204930249|ref|ZP_03221226.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|204320653|gb|EDZ05855.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] Length = 366 Score = 451 bits (1160), Expect = e-125, Method: Composition-based stats. Identities = 239/359 (66%), Positives = 284/359 (79%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L +QYE QLAEKV RL+ MM F ++FRS HYRMRAEF +WHDGDDLYHIMFD Sbjct: 6 LPTEQYEAQLAEKVARLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRLWHDGDDLYHIMFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTK R+R+D F S LIN LM M+A +R LR KLFQIDYLT+ S+QA+V+L+YH Sbjct: 66 QQTKSRIRVDTFPAASQLINTLMKAMIAGVRDNHALRHKLFQIDYLTTLSNQAVVSLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + LD+ WR+ A LRDAL A+ + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E Sbjct: 126 KKLDEEWRKAATALRDALRAQGLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+ MLEW L TK +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV Sbjct: 186 NSFTQPNAAMNIQMLEWALEVTKDSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNI ANH++NV+I+RM+++EFTQAM REFNRL+ ID+ Y+ +TIFVDPPRSGL Sbjct: 246 AAAQYNITANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKRYQCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363 D T MVQAYP ILYISCNP++LC++L LS THT+ RLALFDQFPYT HMECGVLL Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHTVSRLALFDQFPYTHHMECGVLLT 364 >gi|224585942|ref|YP_002639741.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|254789079|sp|C0Q481|TRMA_SALPC RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|224470470|gb|ACN48300.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] Length = 366 Score = 451 bits (1159), Expect = e-124, Method: Composition-based stats. Identities = 239/359 (66%), Positives = 284/359 (79%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L +QYE QLAEKV RL+ MM F ++FRS HYRMRAEF +WHDGDDLYHIMFD Sbjct: 6 LPTEQYEAQLAEKVARLQSMMAPFSGLVPEVFRSPVSHYRMRAEFRLWHDGDDLYHIMFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTK R+R+D F S LIN LM M+A +R LR KLFQIDYLT+ S+QA+V+L+YH Sbjct: 66 QQTKSRIRVDTFPAASQLINTLMKAMIAGVRDNHALRHKLFQIDYLTTLSNQAVVSLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + LD+ WRE A LRDAL A+ + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E Sbjct: 126 KKLDEEWREAATALRDALRAQGLNVHLIGRATKTKIELDQDYIDERLPVAGKEIIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+ MLEW L TK +GDLLELYCGNGNFSL L R+F+RVLA EIAKPSV Sbjct: 186 NSFTQPNAAMNIQMLEWALEVTKDSKGDLLELYCGNGNFSLALTRNFNRVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAANH++NV+I+RM+++EFTQAM REFNRL+ ID+ Y+ +TIFVDPPRSGL Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKRYQCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363 D T MVQAYP ILYISCNP++LC++L LS THT+ RLALFDQFPYT HMECGVLL Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHTVSRLALFDQFPYTHHMECGVLLT 364 >gi|157147235|ref|YP_001454554.1| tRNA (uracil-5-)-methyltransferase [Citrobacter koseri ATCC BAA-895] gi|172045587|sp|A8AKV5|TRMA_CITK8 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|157084440|gb|ABV14118.1| hypothetical protein CKO_03026 [Citrobacter koseri ATCC BAA-895] Length = 366 Score = 450 bits (1158), Expect = e-124, Method: Composition-based stats. Identities = 238/359 (66%), Positives = 286/359 (79%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L +QY+ QLAEKV RL+ MM F ++FRS HYRMRAEF +WHDGDDLYHI+F+ Sbjct: 6 LPTEQYDAQLAEKVVRLQSMMAPFSDLVPEVFRSPASHYRMRAEFRLWHDGDDLYHIIFE 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTK R+R+D F S LIN LM M+ +R +LR KLFQIDYLT+ S+QA+V+L+YH Sbjct: 66 QQTKSRIRVDSFPAASELINQLMTAMIEGVRHNRVLRHKLFQIDYLTTMSNQAVVSLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + LDD WR+ A LRDAL A+ + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E Sbjct: 126 KKLDDEWRQEAETLRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+ MLEW L ATK +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV Sbjct: 186 NSFTQPNAAMNIQMLEWALDATKASKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAANH++NV+I+RM+++EFTQAM REFNRL+ ID+ SY+ +TIFVDPPRSGL Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363 D T MVQAYP ILYISCNP++LC++L LS TH + RLALFDQFPYT HMECGVLL Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHNVSRLALFDQFPYTHHMECGVLLT 364 >gi|227354694|ref|ZP_03839113.1| tRNA (uracil-5)-methyltransferase [Proteus mirabilis ATCC 29906] gi|227165204|gb|EEI50029.1| tRNA (uracil-5)-methyltransferase [Proteus mirabilis ATCC 29906] Length = 393 Score = 450 bits (1157), Expect = e-124, Method: Composition-based stats. Identities = 219/365 (60%), Positives = 282/365 (77%) Query: 1 MSGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60 M +L Y+ QL EK +RL++MM F PN+++F S HYRMRAEF IWH+ D LYH Sbjct: 29 MQNSLPTQTYQSQLNEKTERLQKMMAPFNAPNVEVFSSPEQHYRMRAEFRIWHEQDALYH 88 Query: 61 IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVT 120 IMFDQ+TK+R+R+D F S LIN +M+ ++A I+ +P LR KLFQIDYL++ S++ IV+ Sbjct: 89 IMFDQETKQRIRVDQFPVASQLINQMMVALLAEIKDKPTLRHKLFQIDYLSTLSNKIIVS 148 Query: 121 LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIY 180 L+YH+ +D+ W++ A LR L A+ + +QLIGRA KTKI LD D+VDE L VAG+ +IY Sbjct: 149 LLYHKKIDETWQQEATALRQTLIAQGFDVQLIGRAYKTKIMLDNDFVDEILPVAGQQMIY 208 Query: 181 RQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240 RQ+ENSFTQPNA +N+ MLEW L+ T+ GDLLELYCGNGNFSL LAR+F RVLA EIA Sbjct: 209 RQVENSFTQPNAQVNIKMLEWALSVTENSTGDLLELYCGNGNFSLALARNFKRVLATEIA 268 Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300 KPSV AA+YNIA NH++NVKI+RMS+++FTQAM REF RL+ I++ Y+ +TIFVDPP Sbjct: 269 KPSVHAAQYNIAMNHIDNVKIIRMSAEDFTQAMNGVREFKRLEGINLQDYQCETIFVDPP 328 Query: 301 RSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360 RSGLD+ TV +V+ Y ILYISCNP +LC++L L TH I +LALFDQFPYT HMECGV Sbjct: 329 RSGLDEKTVELVKNYSRILYISCNPQTLCQNLETLIKTHKISKLALFDQFPYTHHMECGV 388 Query: 361 LLVRK 365 LL ++ Sbjct: 389 LLEKR 393 >gi|238750874|ref|ZP_04612372.1| tRNA (uracil-5-)-methyltransferase [Yersinia rohdei ATCC 43380] gi|238711018|gb|EEQ03238.1| tRNA (uracil-5-)-methyltransferase [Yersinia rohdei ATCC 43380] Length = 367 Score = 449 bits (1156), Expect = e-124, Method: Composition-based stats. Identities = 234/362 (64%), Positives = 284/362 (78%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L YE QLAEK RL+ MML FQ P +IFRS HYRMRAEF +WHD DLYHIMFD Sbjct: 6 LPTASYEHQLAEKSARLQAMMLPFQAPAPEIFRSPAEHYRMRAEFRVWHDEGDLYHIMFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTK+R+R++ F S LIN+LM +M IR EP+LR KLFQIDYL++ S + + +L+YH Sbjct: 66 QQTKQRIRVEQFPVASRLINSLMNVLMTAIRAEPILRRKLFQIDYLSTLSGKLVASLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 R LD+ W++ A LRD L A+ + +QLIGRA+KTKI LD DY+DE L +AGR +IYRQ+E Sbjct: 126 RQLDEEWQQKARELRDQLRAQGFDLQLIGRASKTKIMLDHDYIDEVLPIAGREMIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+HMLEW + T+ GDLLELYCGNGNFSL LAR+F+RVLA EIAKPSV Sbjct: 186 NSFTQPNAAVNIHMLEWAIDVTQDASGDLLELYCGNGNFSLALARNFNRVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAANH++NV+I+RMS++EFTQAM+ REF RL+ ID+ SY +TIFVDPPRSGL Sbjct: 246 AAAQYNIAANHIDNVQIIRMSAEEFTQAMQGVREFRRLQGIDLSSYNCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 DD TV +VQ YP ILYISCNP++LC +L L TH I RLALFDQFPYT HMECGVLL + Sbjct: 306 DDETVKLVQTYPRILYISCNPETLCANLEQLQHTHKISRLALFDQFPYTHHMECGVLLEK 365 Query: 365 KP 366 + Sbjct: 366 RD 367 >gi|197287058|ref|YP_002152930.1| tRNA (uracil-5-)-methyltransferase [Proteus mirabilis HI4320] gi|262827918|sp|B4F1H4|TRMA_PROMH RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|194684545|emb|CAR46359.1| tRNA (uracil-5)-methyltransferase [Proteus mirabilis HI4320] Length = 365 Score = 449 bits (1156), Expect = e-124, Method: Composition-based stats. Identities = 219/365 (60%), Positives = 282/365 (77%) Query: 1 MSGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60 M +L Y+ QL EK +RL++MM F PN+++F S HYRMRAEF IWH+ D LYH Sbjct: 1 MQNSLPTQTYQSQLNEKTERLQKMMAPFNAPNVEVFSSPEQHYRMRAEFRIWHEQDALYH 60 Query: 61 IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVT 120 IMFDQ+TK+R+R+D F S LIN +M+ ++A I+ +P LR KLFQIDYL++ S++ IV+ Sbjct: 61 IMFDQETKQRIRVDQFPVASQLINQMMVALLAEIKDKPTLRHKLFQIDYLSTLSNKIIVS 120 Query: 121 LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIY 180 L+YH+ +D+ W++ A LR L A+ + +QLIGRA KTKI LD D+VDE L VAG+ +IY Sbjct: 121 LLYHKKIDETWQQEATALRQTLIAQGFDVQLIGRAYKTKIMLDNDFVDEVLPVAGQQMIY 180 Query: 181 RQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240 RQ+ENSFTQPNA +N+ MLEW L+ T+ GDLLELYCGNGNFSL LAR+F RVLA EIA Sbjct: 181 RQVENSFTQPNAQVNIKMLEWALSVTENSTGDLLELYCGNGNFSLALARNFKRVLATEIA 240 Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300 KPSV AA+YNIA NH++NVKI+RMS+++FTQAM REF RL+ I++ Y+ +TIFVDPP Sbjct: 241 KPSVHAAQYNIAMNHIDNVKIIRMSAEDFTQAMNGVREFKRLEGINLQDYQCETIFVDPP 300 Query: 301 RSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360 RSGLD+ TV +V+ Y ILYISCNP +LC++L L TH I +LALFDQFPYT HMECGV Sbjct: 301 RSGLDEKTVELVKNYSRILYISCNPQTLCQNLETLIKTHKISKLALFDQFPYTHHMECGV 360 Query: 361 LLVRK 365 LL ++ Sbjct: 361 LLEKR 365 >gi|238760129|ref|ZP_04621277.1| tRNA (uracil-5-)-methyltransferase [Yersinia aldovae ATCC 35236] gi|238701627|gb|EEP94196.1| tRNA (uracil-5-)-methyltransferase [Yersinia aldovae ATCC 35236] Length = 367 Score = 449 bits (1155), Expect = e-124, Method: Composition-based stats. Identities = 237/362 (65%), Positives = 287/362 (79%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L D Y+QQLAEK RL+ MM FQ P +IFRS HYRMRAEF +WHD DDLYHIMFD Sbjct: 6 LPTDSYDQQLAEKSARLQAMMSPFQAPAAEIFRSPVEHYRMRAEFRVWHDEDDLYHIMFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTK+R+R++ F +LLIN+LM +M IR EPLLR KLFQIDYL++ S + I +L+YH Sbjct: 66 QQTKQRIRVEQFPVANLLINSLMSVLMTAIRAEPLLRRKLFQIDYLSTMSGKLIASLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 R LD+ W++ A+ LRD L A+ + +QLIGRA KTKI LD DY+DE L VAGR +IYRQ+E Sbjct: 126 RQLDEEWQQKALVLRDQLRAQGFDVQLIGRAAKTKIMLDHDYIDEVLPVAGRDMIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+HMLEW + T+ GDLLELYCGNGNFSL LAR+F+RVLA EIAKPSV Sbjct: 186 NSFTQPNAAVNIHMLEWAIDVTQNASGDLLELYCGNGNFSLALARNFERVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNI+AN+++NV+I+RMS++EFTQAM+ REFNRLK ID+ SY +TIFVDPPRSGL Sbjct: 246 AAAQYNISANNIDNVQIIRMSAEEFTQAMQGIREFNRLKGIDLSSYNCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 DD T+ MVQ YP ILYISCN ++LC +L L TH I RLALFDQFPYT HMECGVLL + Sbjct: 306 DDETLKMVQGYPRILYISCNLETLCANLEQLQHTHKISRLALFDQFPYTHHMECGVLLEK 365 Query: 365 KP 366 + Sbjct: 366 RD 367 >gi|291327277|ref|ZP_06127642.2| tRNA (uracil-5-)-methyltransferase [Providencia rettgeri DSM 1131] gi|291311120|gb|EFE51573.1| tRNA (uracil-5-)-methyltransferase [Providencia rettgeri DSM 1131] Length = 369 Score = 446 bits (1148), Expect = e-123, Method: Composition-based stats. Identities = 220/364 (60%), Positives = 277/364 (76%) Query: 1 MSGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60 M TL + YEQQL EK DRL+ MM F P +IF S HYRMRAEF IWH+GDDL+H Sbjct: 5 MPNTLHTEDYEQQLVEKTDRLKAMMAPFNAPEPEIFSSPTSHYRMRAEFRIWHEGDDLFH 64 Query: 61 IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVT 120 IMF+++TKER+RID F S LIN +M ++ I+ LLR KLFQIDYL++ S++ IV+ Sbjct: 65 IMFNKETKERIRIDQFPVASQLINDMMAALLPLIKQNELLRHKLFQIDYLSTLSNKLIVS 124 Query: 121 LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIY 180 L+YH+ L + W A L+ AL + + +QLIGRA+KTKI LD DYVDE L V G+ ++Y Sbjct: 125 LLYHKKLGEEWMAEAKALKAALVEQGFDVQLIGRASKTKIMLDNDYVDEVLPVMGKNMVY 184 Query: 181 RQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240 RQ+ENSFTQPNA +N+ MLEW + +T+ GDLLELYCGNGNFSL LA++F+RVLA EIA Sbjct: 185 RQVENSFTQPNAQVNIKMLEWAIESTQNSTGDLLELYCGNGNFSLALAQNFERVLATEIA 244 Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300 KPSV AA+YNI AN++ NV+I+RMS+++FTQAM+ REF RL+ I + Y+ TIFVDPP Sbjct: 245 KPSVAAAQYNIEANNIENVQIIRMSAEDFTQAMQGAREFRRLEGISLADYQCNTIFVDPP 304 Query: 301 RSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360 RSGLD TV +VQ Y HILYISCNP++LC +L+ L+ TH IE+LALFDQFPYT HME GV Sbjct: 305 RSGLDAETVKLVQGYEHILYISCNPETLCDNLAELTKTHKIEKLALFDQFPYTHHMESGV 364 Query: 361 LLVR 364 LL R Sbjct: 365 LLSR 368 >gi|188025467|ref|ZP_02958774.2| hypothetical protein PROSTU_00526 [Providencia stuartii ATCC 25827] gi|188023296|gb|EDU61336.1| hypothetical protein PROSTU_00526 [Providencia stuartii ATCC 25827] Length = 367 Score = 445 bits (1144), Expect = e-123, Method: Composition-based stats. Identities = 223/364 (61%), Positives = 284/364 (78%), Gaps = 1/364 (0%) Query: 3 GTLL-IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHI 61 TL+ + YE QLAEKV+RL+ MM + ++F S HYRMRAEF +WHDGDDL+HI Sbjct: 4 ATLMNTEHYELQLAEKVERLKTMMAPYTAMEPEVFTSPESHYRMRAEFRVWHDGDDLFHI 63 Query: 62 MFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTL 121 MFD++TKER+RID F S LIN +M E++ I+ LLR KLFQIDYL++ S++ IV+L Sbjct: 64 MFDKETKERVRIDQFPVASQLINNIMAEILPLIKENALLRHKLFQIDYLSTLSNKLIVSL 123 Query: 122 IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYR 181 +YH+ L + W E A +L+ L + + +QLIGRA+KTKI LD DYVDE L V G+ +IYR Sbjct: 124 LYHKKLTEEWIEAAKQLKTTLINKGFDLQLIGRASKTKIMLDNDYVDEILPVNGKNMIYR 183 Query: 182 QIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241 Q+ENSFTQPNA +N+ MLEW + AT+G GDLLELYCGNGNFSL LA++F+RVLA EIAK Sbjct: 184 QVENSFTQPNAQVNIKMLEWAIDATQGATGDLLELYCGNGNFSLALAQNFERVLATEIAK 243 Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301 PSV AA+YNIAAN ++NV+I+RMS+++FTQAMR REF RL I++ Y+ TIFVDPPR Sbjct: 244 PSVAAAQYNIAANQIDNVQIIRMSAEDFTQAMRGVREFKRLDGINLADYQCNTIFVDPPR 303 Query: 302 SGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVL 361 SGLDD TV +VQ Y +ILYISCNP++LC +LS+L+ TH I++LALFDQFPYT HME GVL Sbjct: 304 SGLDDKTVQLVQEYDNILYISCNPETLCDNLSVLNATHKIKKLALFDQFPYTHHMESGVL 363 Query: 362 LVRK 365 L R+ Sbjct: 364 LTRR 367 >gi|262273152|ref|ZP_06050968.1| tRNA (Uracil54-C5-)-methyltransferase [Grimontia hollisae CIP 101886] gi|262222730|gb|EEY74039.1| tRNA (Uracil54-C5-)-methyltransferase [Grimontia hollisae CIP 101886] Length = 368 Score = 444 bits (1142), Expect = e-123, Method: Composition-based stats. Identities = 207/368 (56%), Positives = 269/368 (73%), Gaps = 3/368 (0%) Query: 1 MSGTLL-IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLY 59 MS TL+ QY+ QL EK+ R++ AF P L++F S HYRMRAEF +WH+GDDLY Sbjct: 1 MSNTLIDTTQYQAQLDEKIARMQSAFEAFNAPELEVFPSPDKHYRMRAEFRVWHEGDDLY 60 Query: 60 HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119 +IMF+Q+TK++ R+D F S +IN LM ++ I+ LR KLFQ+D+L++ S + +V Sbjct: 61 YIMFNQETKQKYRVDQFPQASRIINDLMPLLLDAIKPVESLRRKLFQVDFLSTLSGEVLV 120 Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179 +++YHR LD+ W A L+ L+ + + LIGRA K KI +DRDYV E+L+V RTL Sbjct: 121 SMLYHRQLDEEWEANARMLKQRLNDEGFNLNLIGRARKQKIVIDRDYVVEKLSVNDRTLT 180 Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEI 239 Y+Q+ENSFTQPN + MLEW + T+ GDLLELYCGNGNFSL LA +FDRVLA E+ Sbjct: 181 YQQVENSFTQPNGKVAEKMLEWAIDCTQDSTGDLLELYCGNGNFSLALAENFDRVLATEL 240 Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK--DIDIHSYRFKTIFV 297 AKPSVE+A++NIAAN+++NV+I+RMS++EFT+AM +REF RL+ ID+ SY TIFV Sbjct: 241 AKPSVESAQWNIAANNIDNVQIIRMSAEEFTEAMEGKREFRRLQQAGIDLKSYHCNTIFV 300 Query: 298 DPPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHME 357 DPPRSG+D+ T MVQ Y ILYISCNP++L +L ILS TH I R ALFDQFPYT HME Sbjct: 301 DPPRSGMDEGTCRMVQGYDRILYISCNPETLKENLEILSETHRITRFALFDQFPYTHHME 360 Query: 358 CGVLLVRK 365 GVLL RK Sbjct: 361 AGVLLERK 368 >gi|260914579|ref|ZP_05921047.1| tRNA (uracil-5-)-methyltransferase [Pasteurella dagmatis ATCC 43325] gi|260631370|gb|EEX49553.1| tRNA (uracil-5-)-methyltransferase [Pasteurella dagmatis ATCC 43325] Length = 365 Score = 443 bits (1139), Expect = e-122, Method: Composition-based stats. Identities = 209/365 (57%), Positives = 272/365 (74%) Query: 1 MSGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60 M L I+QY+ LAEK +L ++ F P++++F S +YRMRAEF IWH+ D YH Sbjct: 1 MQSKLPIEQYDSLLAEKQQKLTALLAPFNPPSIEVFSSPVQNYRMRAEFRIWHNQGDFYH 60 Query: 61 IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVT 120 IMFDQQT++R R+D F S LIN +M ++ ++ E L KLFQIDYL++ S++ IV+ Sbjct: 61 IMFDQQTRQRYRVDTFPIASELINQMMTALLPLLKTERALHHKLFQIDYLSTLSNKIIVS 120 Query: 121 LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIY 180 L+YH+ LD+ W E A +L+ AL + + +Q+IGRA+K KICLD ++VDE LTV + +Y Sbjct: 121 LLYHKTLDEQWEEAAKQLKLALEQQGFDVQIIGRASKQKICLDNEFVDEVLTVHSKPYVY 180 Query: 181 RQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240 RQ+ENSFTQPNA +N MLEW + TKG QGDLLELYCGNGNFS+ LA++F +VLA EIA Sbjct: 181 RQVENSFTQPNAMVNQKMLEWAIDCTKGSQGDLLELYCGNGNFSIALAQNFRKVLATEIA 240 Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300 KPSV AA++NIA N V+N++I+RMS++EFTQA+ REFNRLK ID+ +Y TIFVDPP Sbjct: 241 KPSVAAAQFNIAENGVDNLQIIRMSAEEFTQAINGVREFNRLKGIDLKAYECNTIFVDPP 300 Query: 301 RSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360 R+GLD+ TV +VQ Y ILYISCNP +LC +L LS TH IE+ ALFDQFPYT HME GV Sbjct: 301 RAGLDEETVKLVQGYDRILYISCNPHTLCDNLQTLSQTHYIEKAALFDQFPYTDHMETGV 360 Query: 361 LLVRK 365 L+RK Sbjct: 361 WLIRK 365 >gi|325576854|ref|ZP_08147469.1| tRNA (uracil-5-)-methyltransferase [Haemophilus parainfluenzae ATCC 33392] gi|325161060|gb|EGC73178.1| tRNA (uracil-5-)-methyltransferase [Haemophilus parainfluenzae ATCC 33392] Length = 363 Score = 438 bits (1127), Expect = e-121, Method: Composition-based stats. Identities = 206/361 (57%), Positives = 265/361 (73%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L I QY + L +K ++L ++ F P + +F S HYRMRAEF IWHD D YHIMFD Sbjct: 3 LPISQYTELLQKKTEKLTALLQPFNAPEIAVFDSPTSHYRMRAEFRIWHDKGDFYHIMFD 62 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 Q T +R R+D F S LIN +M ++ ++ + +L KLFQIDYL++ S++ IV+L+YH Sbjct: 63 QSTLQRYRVDEFPIASKLINRMMKTLLPLLKTQEVLHKKLFQIDYLSTLSNKIIVSLLYH 122 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + L + W+ A L+D L + +QLIGRA+K KICL++D+VDE L V GR +YRQ+E Sbjct: 123 KQLTEEWQNAAENLKDELQQLDFDVQLIGRASKQKICLEQDFVDEVLPVKGRNYVYRQVE 182 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N MLEW + T+G QGDLLELYCGNGNFS+ LA++F +VLA EIAKPSV Sbjct: 183 NSFTQPNAAVNCKMLEWAIDCTQGSQGDLLELYCGNGNFSIALAQNFRKVLATEIAKPSV 242 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA++NIA N ++N++I+RMS++EFTQAM REFNRLK ID+ +Y+ TIFVDPPR+GL Sbjct: 243 AAAQFNIAENGIDNLQIIRMSAEEFTQAMNGVREFNRLKGIDLKAYQCNTIFVDPPRAGL 302 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D TV +VQ Y ILYISCNP +LC +L LS TH IE+ ALFDQFPYT HME GV LVR Sbjct: 303 DPDTVKLVQNYDRILYISCNPHTLCENLQTLSQTHRIEKAALFDQFPYTDHMESGVWLVR 362 Query: 365 K 365 K Sbjct: 363 K 363 >gi|28899713|ref|NP_799318.1| tRNA (uracil-5-)-methyltransferase [Vibrio parahaemolyticus RIMD 2210633] gi|260361664|ref|ZP_05774691.1| tRNA (uracil-5-)-methyltransferase [Vibrio parahaemolyticus K5030] gi|260879374|ref|ZP_05891729.1| tRNA (uracil-5-)-methyltransferase [Vibrio parahaemolyticus AN-5034] gi|260897201|ref|ZP_05905697.1| tRNA (uracil-5-)-methyltransferase [Vibrio parahaemolyticus Peru-466] gi|33301718|sp|Q87KN8|TRMA_VIBPA RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|28807965|dbj|BAC61202.1| tRNA (uracil-5-)-methyltransferase [Vibrio parahaemolyticus RIMD 2210633] gi|308089331|gb|EFO39026.1| tRNA (uracil-5-)-methyltransferase [Vibrio parahaemolyticus Peru-466] gi|308092833|gb|EFO42528.1| tRNA (uracil-5-)-methyltransferase [Vibrio parahaemolyticus AN-5034] gi|308111286|gb|EFO48826.1| tRNA (uracil-5-)-methyltransferase [Vibrio parahaemolyticus K5030] gi|328472459|gb|EGF43325.1| tRNA (uracil-5-)-methyltransferase [Vibrio parahaemolyticus 10329] Length = 369 Score = 437 bits (1125), Expect = e-121, Method: Composition-based stats. Identities = 204/361 (56%), Positives = 268/361 (74%), Gaps = 2/361 (0%) Query: 7 IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66 +Y++QLAEKV+RL M + VP L++F S HYRMRAEF +WH+G+DLY+IMF+Q+ Sbjct: 8 PQRYQEQLAEKVERLTDMFAPYNVPELEVFESPEQHYRMRAEFRVWHEGEDLYYIMFNQE 67 Query: 67 TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL 126 T+E+ R+D F S LIN LM ++ ++ LR KLFQ+D+L++ S + +V+L+YHR Sbjct: 68 TREKYRVDQFPAASRLINDLMPLLVEAMKDNESLRRKLFQVDFLSTLSGEILVSLLYHRQ 127 Query: 127 LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS 186 LD+ W E A L+ L+ + + +IGRA K KI LDRDYV E+L V G++ IY+Q+ENS Sbjct: 128 LDEEWIENAKALKQRLNDEGFNLNIIGRARKMKIILDRDYVIEKLDVNGQSYIYQQVENS 187 Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246 FTQPN + MLEW + T+ GDLLELYCGNGNFSL LA++FDRVLA E+AKPSVE+ Sbjct: 188 FTQPNGKVAEKMLEWAVDCTQESTGDLLELYCGNGNFSLALAQNFDRVLATELAKPSVES 247 Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGL 304 A+YNIAAN ++NV+I+RMS++EFT+AM +REF RLKD +D+ SY TIFVDPPR+G+ Sbjct: 248 AQYNIAANKIDNVQIIRMSAEEFTEAMEGKREFRRLKDNGVDLKSYNCNTIFVDPPRAGM 307 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D T MVQ Y I+YISCNP++L +L ILS TH + R ALFDQFPYT HME GVLL R Sbjct: 308 DVDTCKMVQGYERIMYISCNPETLKENLDILSETHNVTRFALFDQFPYTHHMEAGVLLER 367 Query: 365 K 365 K Sbjct: 368 K 368 >gi|301155200|emb|CBW14665.1| tRNA (uracil-5-)-methyltransferase [Haemophilus parainfluenzae T3T1] Length = 363 Score = 436 bits (1122), Expect = e-120, Method: Composition-based stats. Identities = 205/361 (56%), Positives = 264/361 (73%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L I QY + L +K ++L ++ F P + +F S HYRMRAEF IWHD D YHIMFD Sbjct: 3 LPISQYTELLQKKTEKLTALLQPFNAPEIAVFDSPTSHYRMRAEFRIWHDKGDFYHIMFD 62 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 Q T +R R+D F S LIN +M ++ ++ + +L KLFQIDYL++ S++ IV+L+YH Sbjct: 63 QTTLQRYRVDEFPIASELINRMMKALLPLLKTQEVLHKKLFQIDYLSTLSNKIIVSLLYH 122 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + L + W+ A L+ L + +QLIGRA+K KICL++D+VDE L V GR +YRQ+E Sbjct: 123 KQLTEEWQSAAANLKGELQQLGFDVQLIGRASKQKICLEQDFVDEVLPVKGRNYVYRQVE 182 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N MLEW + T+G QGDLLELYCGNGNFS+ LA++F +VLA EIAKPSV Sbjct: 183 NSFTQPNAAVNCKMLEWAIDCTQGSQGDLLELYCGNGNFSIALAQNFRKVLATEIAKPSV 242 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA++NIA N ++N++I+RMS++EFTQAM REFNRLK ID+ +Y+ TIFVDPPR+GL Sbjct: 243 AAAQFNIAENGIDNLQIIRMSAEEFTQAMNGVREFNRLKGIDLKTYQCNTIFVDPPRAGL 302 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D TV +VQ Y ILYISCNP +LC +L LS TH IE+ ALFDQFPYT HME GV LVR Sbjct: 303 DPDTVKLVQNYDRILYISCNPHTLCENLQTLSQTHRIEKAALFDQFPYTDHMESGVWLVR 362 Query: 365 K 365 K Sbjct: 363 K 363 >gi|315635167|ref|ZP_07890445.1| tRNA (uracil-5-)-methyltransferase [Aggregatibacter segnis ATCC 33393] gi|315476129|gb|EFU66883.1| tRNA (uracil-5-)-methyltransferase [Aggregatibacter segnis ATCC 33393] Length = 368 Score = 436 bits (1121), Expect = e-120, Method: Composition-based stats. Identities = 210/362 (58%), Positives = 270/362 (74%) Query: 4 TLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63 L +D+Y + L EK +L ++ F P+LQ+F S H+RMRAEF IWH+GDD YHIMF Sbjct: 6 NLPVDRYAKLLEEKQQKLTALLSPFDAPDLQVFASPTQHFRMRAEFRIWHEGDDFYHIMF 65 Query: 64 DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIY 123 DQQ+K+R R+D F S LIN +M ++ ++ + +L +LFQIDYL++QS Q IV+L+Y Sbjct: 66 DQQSKQRYRVDNFPITSELINRMMTALLPLLKQQMVLHHRLFQIDYLSTQSQQIIVSLLY 125 Query: 124 HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQI 183 H+ LD+ W+ A LR L + + +Q++GRA+K KICL++DYVDE L V G+ IYRQ+ Sbjct: 126 HKALDENWQTAAQTLRSQLQQQGFNVQIVGRASKQKICLEQDYVDEILQVQGKDYIYRQV 185 Query: 184 ENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 ENSFTQPNA +N MLEW + T+ GDLLELYCGNGNFS+ LA++F +VLA EIAKPS Sbjct: 186 ENSFTQPNAAVNSKMLEWAVDCTRNSHGDLLELYCGNGNFSIALAQNFRKVLATEIAKPS 245 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 V AA++NIAAN V N++I+RMS++EFTQAM+ REFNRLK ID+ +Y TIFVDPPR+G Sbjct: 246 VAAAQFNIAANEVENLQIIRMSAEEFTQAMQGVREFNRLKGIDLKAYECNTIFVDPPRAG 305 Query: 304 LDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363 LD TV +VQ Y ILYISCNP +LC +L LS TH IE+ ALFDQFPYT HME GV LV Sbjct: 306 LDAETVKLVQQYERILYISCNPHTLCDNLKTLSQTHRIEKAALFDQFPYTEHMEAGVWLV 365 Query: 364 RK 365 RK Sbjct: 366 RK 367 >gi|320154991|ref|YP_004187370.1| tRNA (Uracil54-C5-)-methyltransferase [Vibrio vulnificus MO6-24/O] gi|319930303|gb|ADV85167.1| tRNA (Uracil54-C5-)-methyltransferase [Vibrio vulnificus MO6-24/O] Length = 369 Score = 435 bits (1120), Expect = e-120, Method: Composition-based stats. Identities = 208/361 (57%), Positives = 267/361 (73%), Gaps = 2/361 (0%) Query: 7 IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66 +Y+QQLAEKV RL M +Q P L++F S HYRMRAEF +WH+G+++Y+IMF+Q+ Sbjct: 8 PQRYQQQLAEKVQRLTDMFAPYQAPELEVFESPEQHYRMRAEFRVWHEGEEMYYIMFNQE 67 Query: 67 TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL 126 T+E+ R+D F S LIN LM ++ ++ LR KLFQ+D+L++ S + +V+L+YHR Sbjct: 68 TREKYRVDQFPAASRLINDLMPLLIDAMKDNESLRRKLFQVDFLSTLSGEILVSLLYHRQ 127 Query: 127 LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS 186 LDDAW E A L+ L+ + + LIGRA K KI LDRDYV E+L V G+ +Y+Q+ENS Sbjct: 128 LDDAWIENAKALKQRLNDEGFNLNLIGRARKMKIVLDRDYVVEKLDVNGKPYVYQQVENS 187 Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246 FTQPN + MLEW + T+ QGDLLELYCGNGNFSL LA++F+RVLA E+AKPSVE+ Sbjct: 188 FTQPNGKVAEKMLEWAVDCTQESQGDLLELYCGNGNFSLALAQNFERVLATELAKPSVES 247 Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGL 304 A+YNIAAN + NV+I+RMS++EFT+AM +REF RLKD ID+ SY TIFVDPPRSG+ Sbjct: 248 AQYNIAANKIENVQIIRMSAEEFTEAMEGKREFRRLKDNGIDLKSYNCNTIFVDPPRSGM 307 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D T MVQ Y ILYISCNP++L +L ILS TH I R ALFDQFPYT HME GV+L R Sbjct: 308 DVDTCKMVQGYERILYISCNPETLKENLDILSETHHITRFALFDQFPYTHHMEAGVMLER 367 Query: 365 K 365 K Sbjct: 368 K 368 >gi|27364587|ref|NP_760115.1| tRNA (uracil-5-)-methyltransferase [Vibrio vulnificus CMCP6] gi|33301727|sp|Q8DD43|TRMA_VIBVU RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|27360706|gb|AAO09642.1| tRNA (uracil-5-)-methyltransferase [Vibrio vulnificus CMCP6] Length = 369 Score = 435 bits (1120), Expect = e-120, Method: Composition-based stats. Identities = 208/361 (57%), Positives = 266/361 (73%), Gaps = 2/361 (0%) Query: 7 IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66 +Y+QQLAEKV RL M +Q P L++F S HYRMRAEF +WH+G+++Y+IMF+Q+ Sbjct: 8 PQRYQQQLAEKVQRLTDMFAPYQAPELEVFESPDQHYRMRAEFRVWHEGEEMYYIMFNQE 67 Query: 67 TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL 126 T+E+ R+D F S LIN LM ++ ++ LR KLFQ+D+L++ S + +V+L+YHR Sbjct: 68 TREKYRVDQFPAASRLINDLMPLLIDAMKDNESLRRKLFQVDFLSTLSGEILVSLLYHRQ 127 Query: 127 LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS 186 LDDAW E A L+ L+ + + LIGRA K KI LDRDYV E+L V G+ Y+Q+ENS Sbjct: 128 LDDAWIENAKALKQRLNDEGFNLNLIGRARKMKIVLDRDYVVEKLDVNGKPYTYQQVENS 187 Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246 FTQPN + MLEW + T+ QGDLLELYCGNGNFSL LA++F+RVLA E+AKPSVE+ Sbjct: 188 FTQPNGKVAEKMLEWAVDCTQESQGDLLELYCGNGNFSLALAQNFERVLATELAKPSVES 247 Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGL 304 A+YNIAAN + NV+I+RMS++EFT+AM +REF RLKD ID+ SY TIFVDPPRSG+ Sbjct: 248 AQYNIAANKIENVQIIRMSAEEFTEAMEGKREFRRLKDNGIDLKSYNCNTIFVDPPRSGM 307 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D T MVQ Y ILYISCNP++L +L ILS TH I R ALFDQFPYT HME GV+L R Sbjct: 308 DVDTCKMVQGYERILYISCNPETLKENLDILSETHHITRFALFDQFPYTHHMEAGVMLER 367 Query: 365 K 365 K Sbjct: 368 K 368 >gi|37678313|ref|NP_932922.1| tRNA (uracil-5-)-methyltransferase [Vibrio vulnificus YJ016] gi|50401488|sp|Q7MQ79|TRMA_VIBVY RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|37197052|dbj|BAC92893.1| SAM-dependent methyltransferase [Vibrio vulnificus YJ016] Length = 369 Score = 435 bits (1119), Expect = e-120, Method: Composition-based stats. Identities = 208/361 (57%), Positives = 267/361 (73%), Gaps = 2/361 (0%) Query: 7 IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66 +Y+QQLAEKV RL M +Q P L++F S HYRMRAEF +WH+G+++Y+IMF+Q+ Sbjct: 8 PQRYQQQLAEKVQRLTDMFAPYQAPELEVFESPEQHYRMRAEFRVWHEGEEMYYIMFNQE 67 Query: 67 TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL 126 T+E+ R+D F S LIN LM ++ ++ LR KLFQ+D+L++ S + +V+L+YHR Sbjct: 68 TREKYRVDQFPAASRLINDLMPLLIDAMKDNESLRRKLFQVDFLSTLSGEILVSLLYHRQ 127 Query: 127 LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS 186 LDDAW E A L+ L+ + + LIGRA K KI LDRDYV E+L V G+ +Y+Q+ENS Sbjct: 128 LDDAWIENAKALKQRLNDEGFDLNLIGRARKMKIVLDRDYVVEKLDVNGKPYVYQQVENS 187 Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246 FTQPN + MLEW + T+ QGDLLELYCGNGNFSL LA++F+RVLA E+AKPSVE+ Sbjct: 188 FTQPNGKVAEKMLEWAVDCTQESQGDLLELYCGNGNFSLALAQNFERVLATELAKPSVES 247 Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGL 304 A+YNIAAN + NV+I+RMS++EFT+AM +REF RLKD ID+ SY TIFVDPPRSG+ Sbjct: 248 AQYNIAANKIENVQIIRMSAEEFTEAMEGKREFRRLKDNGIDLKSYNCNTIFVDPPRSGM 307 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D T MVQ Y ILYISCNP++L +L ILS TH I R ALFDQFPYT HME GV+L R Sbjct: 308 DVDTCKMVQGYERILYISCNPETLKENLDILSETHHITRFALFDQFPYTHHMEAGVMLER 367 Query: 365 K 365 K Sbjct: 368 K 368 >gi|251793563|ref|YP_003008292.1| tRNA (uracil-5-)-methyltransferase [Aggregatibacter aphrophilus NJ8700] gi|262827621|sp|C6AQU6|TRMA_AGGAN RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|247534959|gb|ACS98205.1| tRNA (uracil-5-)-methyltransferase [Aggregatibacter aphrophilus NJ8700] Length = 365 Score = 435 bits (1118), Expect = e-120, Method: Composition-based stats. Identities = 210/362 (58%), Positives = 269/362 (74%) Query: 4 TLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63 L + Y LAEK ++L ++ F PNLQ+F S H+RMRAEF IWH+GDD YHIMF Sbjct: 3 NLPVTHYSALLAEKQEKLTALLAPFNAPNLQVFASPTQHFRMRAEFRIWHEGDDFYHIMF 62 Query: 64 DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIY 123 DQQ+K+R R+D F S LIN +M ++ ++ + +L +LFQIDYL++QS IV+L+Y Sbjct: 63 DQQSKQRYRVDNFPIASELINRMMTALLPLLKQQTVLHHRLFQIDYLSTQSQHIIVSLLY 122 Query: 124 HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQI 183 H+ LD+ W+ A LR L + + +Q++GRA+K KICL++DYVDE L V G+ IYRQ+ Sbjct: 123 HKALDEDWQAAAQTLRSQLQQQGFNVQIVGRASKQKICLEQDYVDEILRVHGKDYIYRQV 182 Query: 184 ENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 ENSFTQPNA +N MLEW + T+ GDLLELYCGNGNFS+ LA++F +VLA EIAKPS Sbjct: 183 ENSFTQPNATVNSKMLEWAVDCTRNSHGDLLELYCGNGNFSIALAQNFRKVLATEIAKPS 242 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 V AA++NIAAN +NN++I+RMS++EFTQAM+ REFNRLK ID+ +Y TIFVDPPR+G Sbjct: 243 VAAAQFNIAANQINNLQIIRMSAEEFTQAMQGVREFNRLKGIDLKAYECNTIFVDPPRAG 302 Query: 304 LDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363 LD TV +VQ Y ILYISCNP +LC +L LS TH IE+ ALFDQFPYT HME GV LV Sbjct: 303 LDADTVKLVQQYERILYISCNPHTLCDNLQTLSQTHRIEKAALFDQFPYTEHMEAGVWLV 362 Query: 364 RK 365 RK Sbjct: 363 RK 364 >gi|315178788|gb|ADT85702.1| tRNA (uracil-5-)-methyltransferase [Vibrio furnissii NCTC 11218] Length = 376 Score = 434 bits (1116), Expect = e-119, Method: Composition-based stats. Identities = 207/361 (57%), Positives = 268/361 (74%), Gaps = 2/361 (0%) Query: 7 IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66 + Y+ QL +KV RL M A+QVP L++F S HYRMRAEF +WHDGDD+Y+IMF+ + Sbjct: 15 PNHYQAQLDDKVTRLTDMFQAYQVPELEVFESPQQHYRMRAEFRVWHDGDDMYYIMFNPE 74 Query: 67 TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL 126 T+E+ R+D F S LIN LM +M ++ + LR KLFQ+D+L++ S + +V+L+YHR Sbjct: 75 TREKYRVDQFPAASRLINDLMPLLMDAMKGDDTLRRKLFQVDFLSTLSGEVLVSLLYHRQ 134 Query: 127 LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS 186 LD+AW A +L+ L+ + + LIGRA K KI LDRD+V E+L V G+ IY+Q+ENS Sbjct: 135 LDNAWTAAAKKLKQRLNDEGFNLNLIGRARKMKIVLDRDFVVEKLHVNGQPYIYQQVENS 194 Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246 FTQPN + MLEW + T+ QGDLLELYCGNGNFSL LA++FDRVLA E+AKPSVE+ Sbjct: 195 FTQPNGKVAEKMLEWAVDCTQESQGDLLELYCGNGNFSLALAQNFDRVLATELAKPSVES 254 Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGL 304 A+YNIAAN ++NV+I+RMS++EFTQAM +REFNRLKD +D+ SY TIFVDPPR+G+ Sbjct: 255 AQYNIAANAIDNVQIIRMSAEEFTQAMEGKREFNRLKDAGVDLKSYNCNTIFVDPPRAGM 314 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D T MVQ Y ILYISCNP++L +L +L TH + R ALFDQFPYT HME GVLL R Sbjct: 315 DIDTCKMVQGYERILYISCNPETLKDNLDVLCETHRVTRFALFDQFPYTHHMEAGVLLER 374 Query: 365 K 365 K Sbjct: 375 K 375 >gi|261866761|ref|YP_003254683.1| tRNA (uracil-5-)-methyltransferase [Aggregatibacter actinomycetemcomitans D11S-1] gi|261412093|gb|ACX81464.1| tRNA (uracil-5-)-methyltransferase [Aggregatibacter actinomycetemcomitans D11S-1] Length = 365 Score = 433 bits (1113), Expect = e-119, Method: Composition-based stats. Identities = 209/362 (57%), Positives = 270/362 (74%) Query: 4 TLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63 L +++Y LAEK +L + F P LQ+F S H+RMRAEF IWH+ DD YHIMF Sbjct: 3 NLPVERYSALLAEKQKKLTALFAPFNAPELQVFASPTQHFRMRAEFRIWHEQDDFYHIMF 62 Query: 64 DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIY 123 DQQ+K+R R+D F + L+N +M ++ ++ + +L KLFQIDYL++QS Q IV+L+Y Sbjct: 63 DQQSKQRYRVDCFPIANELVNRMMTALLPLLKQQIVLHHKLFQIDYLSTQSQQIIVSLLY 122 Query: 124 HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQI 183 H+ LDDAW+ A LR LH + + +QLIGRA+K KICL++DYVDE L+V G+ IYRQ+ Sbjct: 123 HKTLDDAWQTAARTLRSQLHQQGFNVQLIGRASKQKICLEQDYVDEILSVHGKQYIYRQV 182 Query: 184 ENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 ENSF QPNA +N MLEW + T+ GDLLELYCGNGNFS+ LA++F +VLA EIAKPS Sbjct: 183 ENSFIQPNAAVNSKMLEWAVDCTRNSHGDLLELYCGNGNFSITLAQNFRQVLATEIAKPS 242 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 V AA++NIAAN V N++I+RMS++EFTQAM+ R FNRLK ID+ +Y+ TIFVDPPR+G Sbjct: 243 VAAAQFNIAANKVENLQIIRMSAEEFTQAMQGVRAFNRLKGIDLTAYQCNTIFVDPPRAG 302 Query: 304 LDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363 LD+ T+ +VQ Y +LYISCNP +LC +L IL TH IE+ ALFDQFPYT HME GV LV Sbjct: 303 LDNETLKLVQQYERVLYISCNPHTLCDNLQILCQTHRIEKAALFDQFPYTEHMEAGVWLV 362 Query: 364 RK 365 RK Sbjct: 363 RK 364 >gi|261494651|ref|ZP_05991131.1| hypothetical protein COI_0439 [Mannheimia haemolytica serotype A2 str. OVINE] gi|261309616|gb|EEY10839.1| hypothetical protein COI_0439 [Mannheimia haemolytica serotype A2 str. OVINE] Length = 363 Score = 432 bits (1111), Expect = e-119, Method: Composition-based stats. Identities = 198/362 (54%), Positives = 264/362 (72%) Query: 4 TLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63 TL I+QY LA+K + L ++ F P +++F S+P H+RMRAEF +WH+ +LYHIMF Sbjct: 2 TLPIEQYSDLLAKKTENLTALLKPFNPPAIEVFASKPSHFRMRAEFRVWHEEGELYHIMF 61 Query: 64 DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIY 123 + +TK R R+D F S LIN +M ++A I+ LL KLFQIDYL++ S + V+++Y Sbjct: 62 NPETKARYRVDSFPIASELINHMMTALLAEIKGNELLTRKLFQIDYLSTLSGEIAVSMLY 121 Query: 124 HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQI 183 H+ L++ W E A L+ L + +++Q+IGRANK KI LD DYV+E L V G+ +YRQ+ Sbjct: 122 HKSLNEEWVEQANALKSRLEQQGFKMQIIGRANKQKIALDCDYVEEILPVHGKNYVYRQV 181 Query: 184 ENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 ENSFTQPNA +N+ MLEW TK +GDLLELYCGNGNFS+ LA +F +VLA EI+K S Sbjct: 182 ENSFTQPNAEMNIKMLEWARNCTKNSEGDLLELYCGNGNFSIALAENFRKVLATEISKSS 241 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 V++A+YNI N + N++I+RMS++EFTQAM R F RLK ID+++Y TIFVDPPR+G Sbjct: 242 VQSAQYNIEKNGIVNLQIIRMSAEEFTQAMNGVRAFYRLKGIDLNAYECNTIFVDPPRAG 301 Query: 304 LDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363 LD AT+ MVQAY ILYISCNP++L +L LS TH IE+ ALFDQFPYT H+E GV L+ Sbjct: 302 LDQATLDMVQAYERILYISCNPETLAENLQQLSQTHRIEKAALFDQFPYTHHIESGVWLI 361 Query: 364 RK 365 RK Sbjct: 362 RK 363 >gi|254362737|ref|ZP_04978821.1| tRNA (uracil-5-)-methyltransferase [Mannheimia haemolytica PHL213] gi|153094362|gb|EDN75217.1| tRNA (uracil-5-)-methyltransferase [Mannheimia haemolytica PHL213] Length = 363 Score = 432 bits (1111), Expect = e-119, Method: Composition-based stats. Identities = 198/362 (54%), Positives = 264/362 (72%) Query: 4 TLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63 TL I+QY LA+K + L ++ F P +++F S+P H+RMRAEF +WH+ +LYHIMF Sbjct: 2 TLPIEQYSDLLAKKTENLTALLKPFNPPAIEVFASKPSHFRMRAEFRVWHEEGELYHIMF 61 Query: 64 DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIY 123 + +TK R R+D F S LIN +M ++A I+ LL KLFQIDYL++ S + V+++Y Sbjct: 62 NPETKARYRVDSFPIASELINHMMTALLAEIKGNELLTRKLFQIDYLSTLSGEIAVSMLY 121 Query: 124 HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQI 183 H+ L++ W E A L+ L + +++Q+IGRANK KI LD DYV+E L V G+ +YRQ+ Sbjct: 122 HKSLNEEWVEQANALKSRLEQQGFKVQIIGRANKQKIALDCDYVEEILPVHGKNYVYRQV 181 Query: 184 ENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 ENSFTQPNA +N+ MLEW TK +GDLLELYCGNGNFS+ LA +F +VLA EI+K S Sbjct: 182 ENSFTQPNAEMNIKMLEWARNCTKNSEGDLLELYCGNGNFSIALAENFRKVLATEISKSS 241 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 V++A+YNI N + N++I+RMS++EFTQAM R F RLK ID+++Y TIFVDPPR+G Sbjct: 242 VQSAQYNIEKNGIVNLQIIRMSAEEFTQAMNGVRAFYRLKGIDLNAYECNTIFVDPPRAG 301 Query: 304 LDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363 LD AT+ MVQAY ILYISCNP++L +L LS TH IE+ ALFDQFPYT H+E GV L+ Sbjct: 302 LDQATLNMVQAYERILYISCNPETLAENLQQLSQTHRIEKAALFDQFPYTHHIESGVWLI 361 Query: 364 RK 365 RK Sbjct: 362 RK 363 >gi|262392929|ref|YP_003284783.1| tRNA (Uracil54-C5-)-methyltransferase [Vibrio sp. Ex25] gi|262336523|gb|ACY50318.1| tRNA (Uracil54-C5-)-methyltransferase [Vibrio sp. Ex25] Length = 369 Score = 432 bits (1111), Expect = e-119, Method: Composition-based stats. Identities = 199/361 (55%), Positives = 266/361 (73%), Gaps = 2/361 (0%) Query: 7 IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66 +Y++QLAEKV+RL M + +P L++F S HYRMRAEF +WH+G+DLY+IMF+Q+ Sbjct: 8 PQRYQEQLAEKVERLTDMFAPYNMPELEVFESPEQHYRMRAEFRVWHEGEDLYYIMFNQE 67 Query: 67 TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL 126 T+E+ R+D F S LIN LM ++ ++ LR KLFQ+D+L++ S + +V+L+YHR Sbjct: 68 TREKYRVDQFPAASRLINDLMPLLVEAMKDNDSLRRKLFQVDFLSTLSGEILVSLLYHRQ 127 Query: 127 LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS 186 LD+ W E A L+ L+ + + +IGRA K KI LDRDYV E+L V G++ IY+Q+ENS Sbjct: 128 LDEEWIENAKALKQRLNDEGFNLNIIGRARKMKIVLDRDYVIEKLDVNGQSYIYQQVENS 187 Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246 FTQPN + MLEW + T+ GDLLELYCGNGNFSL LA++FDRVLA E+AKPSV + Sbjct: 188 FTQPNGKVAEKMLEWAVDCTQESTGDLLELYCGNGNFSLALAQNFDRVLATELAKPSVVS 247 Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGL 304 A+YNIAAN ++NV+I+R+S++EFTQA+ +REF RL+D +D+ SY TIFVDPPR+G+ Sbjct: 248 AQYNIAANKIDNVQILRLSAEEFTQAIEGKREFRRLQDAGVDLKSYNCNTIFVDPPRAGM 307 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D T MVQ Y I+YISCNP++L +L IL TH + R ALFDQFPYT HME GVLL R Sbjct: 308 DADTCKMVQGYERIMYISCNPETLKENLDILCETHNVTRFALFDQFPYTHHMEAGVLLER 367 Query: 365 K 365 K Sbjct: 368 K 368 >gi|330444843|ref|ZP_08308498.1| tRNA (uracil-5-)-methyltransferase [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328489153|dbj|GAA02995.1| tRNA (uracil-5-)-methyltransferase [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 368 Score = 432 bits (1111), Expect = e-119, Method: Composition-based stats. Identities = 198/368 (53%), Positives = 270/368 (73%), Gaps = 3/368 (0%) Query: 1 MSGTLL-IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLY 59 M+ T+L Y+QQL EK +R++ + F P L++F S HYRMRAEF +WH+G+DL+ Sbjct: 1 MTSTILNTADYQQQLDEKAERIQNIFADFDTPELEVFASPAEHYRMRAEFRVWHEGEDLF 60 Query: 60 HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119 +IMF+Q+T+E+ R+D F S LIN LM ++ I+ LR KLFQ+D+L++ S + +V Sbjct: 61 YIMFNQETREKYRVDQFPAASRLINDLMPMLVDAIKPIKALRHKLFQVDFLSTLSGEILV 120 Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179 +++YHR LDD W A +L+ L+ +++ +IGRA K KI LD+DYV E+L + RTL Sbjct: 121 SMLYHRQLDDEWTAEAKQLKQRLNDEGFKLNIIGRARKMKIVLDQDYVIEQLKINDRTLT 180 Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEI 239 Y+Q+ENSFTQPN + MLEW + T+ +GDLLELYCGNGNFSL LA++F+RVLA E+ Sbjct: 181 YKQVENSFTQPNGEVAQKMLEWAVDCTQDSEGDLLELYCGNGNFSLALAQNFERVLATEL 240 Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFV 297 AKPSV++A+YNIA N+++NV+I+RMS+++FT AM +REF RLK+ +D+ SY TIFV Sbjct: 241 AKPSVDSAQYNIAVNNIDNVQIIRMSAEDFTDAMEGKREFRRLKEQNVDLQSYNCNTIFV 300 Query: 298 DPPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHME 357 DPPRSG+D+ T MVQ Y I+YISCNP++L +L IL TH I R ALFDQFPYT HME Sbjct: 301 DPPRSGMDEGTCRMVQGYDRIMYISCNPETLKENLDILGETHRITRFALFDQFPYTHHME 360 Query: 358 CGVLLVRK 365 GVLL RK Sbjct: 361 AGVLLERK 368 >gi|323498754|ref|ZP_08103741.1| tRNA (uracil-5-)-methyltransferase [Vibrio sinaloensis DSM 21326] gi|323316182|gb|EGA69206.1| tRNA (uracil-5-)-methyltransferase [Vibrio sinaloensis DSM 21326] Length = 368 Score = 432 bits (1111), Expect = e-119, Method: Composition-based stats. Identities = 200/361 (55%), Positives = 268/361 (74%), Gaps = 2/361 (0%) Query: 7 IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66 +Y++QLAEKV+RL +M + VP L++F S HYRMRAEF +WH+G+DLY+IMF+Q+ Sbjct: 8 PQRYQEQLAEKVERLTEMFSPYNVPELEVFESPEQHYRMRAEFRVWHEGEDLYYIMFNQE 67 Query: 67 TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL 126 T+E+ R+D F S LIN LM +M ++ LR KLFQ+D+L++ S + +V+L+YHR Sbjct: 68 TREKYRVDQFPTASRLINDLMPLLMDAMKDNDSLRRKLFQVDFLSTLSGEILVSLLYHRQ 127 Query: 127 LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS 186 LDD W + A L+ L+ + + +IGRA K KI LDRDYV E+L V G++ +Y+Q+ENS Sbjct: 128 LDDEWTQNAKALKQRLNDEGFNLNIIGRARKMKIVLDRDYVIEKLDVNGQSYVYQQVENS 187 Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246 FTQPN + MLEW + T+ GDLLELYCGNGNFSL LA++FDRVLA E+AKPSV + Sbjct: 188 FTQPNGKVAEKMLEWAVDCTQDSSGDLLELYCGNGNFSLALAQNFDRVLATELAKPSVVS 247 Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGL 304 A+YNIAAN ++NV+I+R+S++EFTQA+ +REF RL+D +D+ SY TIFVDPPR+G+ Sbjct: 248 AQYNIAANKIDNVQILRLSAEEFTQAIEGKREFRRLQDAGVDLKSYNCNTIFVDPPRAGM 307 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D T MVQ Y I+YISCNP++L +L ILS TH + R ALFDQFP+T HME GVLL R Sbjct: 308 DVDTCKMVQGYERIMYISCNPETLKDNLDILSETHKVTRFALFDQFPFTHHMEAGVLLER 367 Query: 365 K 365 K Sbjct: 368 K 368 >gi|15603668|ref|NP_246742.1| tRNA (uracil-5-)-methyltransferase [Pasteurella multocida subsp. multocida str. Pm70] gi|20178160|sp|Q9CK32|TRMA_PASMU RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|12722224|gb|AAK03887.1| TrmA [Pasteurella multocida subsp. multocida str. Pm70] Length = 365 Score = 432 bits (1111), Expect = e-119, Method: Composition-based stats. Identities = 204/365 (55%), Positives = 271/365 (74%) Query: 1 MSGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60 M L I+QY+ LAEK +L ++ F P L +F S HYRMRAEF IWHD D YH Sbjct: 1 MQALLPIEQYDSLLAEKQKKLTALLAPFHAPALAVFPSPVQHYRMRAEFRIWHDKGDFYH 60 Query: 61 IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVT 120 IMFDQ+T++R R+D F S LIN +M ++ ++ +L KLFQIDYL++ S++ IV+ Sbjct: 61 IMFDQRTRQRYRVDCFPMASQLINQMMDTLLPLLKTNRVLHHKLFQIDYLSTLSNKIIVS 120 Query: 121 LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIY 180 L+YH+ LD+ W + A +L+ +L + + +QLIGRA+K KICL++++VDE LTV G++ +Y Sbjct: 121 LLYHKTLDEEWEQAAKQLKASLLQQGFDLQLIGRASKQKICLEQEFVDEVLTVHGKSYVY 180 Query: 181 RQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240 RQ+ENSFTQPNA +N MLEW + T+ +GDLLELYCGNGNFS+ LA++F +VLA EIA Sbjct: 181 RQVENSFTQPNAIVNQKMLEWAVDCTQNSEGDLLELYCGNGNFSIALAQNFRKVLATEIA 240 Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300 KPSV AA++NIA N + N++I+RMS++EFTQAM REF+RLK ID+++Y TIFVDPP Sbjct: 241 KPSVAAAQFNIAENSIKNLQIIRMSAEEFTQAMNGVREFHRLKGIDLNAYECNTIFVDPP 300 Query: 301 RSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360 R+GLD+ TV +VQ Y ILYISCNP +LC +L L TH IE+ ALFDQFPYT HME GV Sbjct: 301 RAGLDEETVKLVQNYDRILYISCNPHTLCDNLQHLCQTHRIEKAALFDQFPYTEHMEAGV 360 Query: 361 LLVRK 365 L+RK Sbjct: 361 WLIRK 365 >gi|303250361|ref|ZP_07336560.1| tRNA (uracil-5-)-methyltransferase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307253670|ref|ZP_07535537.1| tRNA (uracil-5-)-methyltransferase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|302650831|gb|EFL80988.1| tRNA (uracil-5-)-methyltransferase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306858906|gb|EFM90952.1| tRNA (uracil-5-)-methyltransferase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 368 Score = 432 bits (1111), Expect = e-119, Method: Composition-based stats. Identities = 205/367 (55%), Positives = 265/367 (72%), Gaps = 5/367 (1%) Query: 4 TLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHD-----GDDL 58 L I+QY LAEK L ++ F P L++F SE H+RMRAEF +WHD ++L Sbjct: 2 NLPIEQYADLLAEKAKNLTALLAPFNPPELEVFESETSHFRMRAEFRVWHDTNEVGENEL 61 Query: 59 YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAI 118 YHIMFDQ+TK+R R+D F + LIN +M ++A I+ LL KLFQ+DYL++ S + Sbjct: 62 YHIMFDQETKQRYRVDQFPIANHLINKMMSSLLAEIKGNELLTRKLFQVDYLSTLSGEIA 121 Query: 119 VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTL 178 V+++YH+ L++ W+ A L+ L + +++QLIGRA K KI LDRDYV+E L V GR L Sbjct: 122 VSMLYHKKLNEEWQTEAAALKVRLEHQGFKVQLIGRATKQKIALDRDYVEEVLPVDGRNL 181 Query: 179 IYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVE 238 IYRQ+ENSFTQPNA +N+ MLEW + TK GDLLELYCGNGNFS+ LA +F +VLA E Sbjct: 182 IYRQVENSFTQPNAKMNIKMLEWARSCTKNSTGDLLELYCGNGNFSIALAENFRQVLATE 241 Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298 I+K SV++A+YNI N ++N++I+RMS++EFTQAM REFNRLK ID+ +Y TIFVD Sbjct: 242 ISKSSVQSAQYNIEQNGIDNLQIIRMSAEEFTQAMSGVREFNRLKGIDLKAYDCNTIFVD 301 Query: 299 PPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMEC 358 PPR+GLD T+ MVQAY ILYISCNP +L +L LS TH IER ALFDQFPYT H+E Sbjct: 302 PPRAGLDQDTLNMVQAYERILYISCNPHTLAENLQQLSQTHRIERAALFDQFPYTHHVES 361 Query: 359 GVLLVRK 365 GV L+RK Sbjct: 362 GVWLIRK 368 >gi|261491879|ref|ZP_05988458.1| hypothetical protein COK_0317 [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261312534|gb|EEY13658.1| hypothetical protein COK_0317 [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 363 Score = 432 bits (1110), Expect = e-119, Method: Composition-based stats. Identities = 198/362 (54%), Positives = 263/362 (72%) Query: 4 TLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63 TL I+QY LA+K + L ++ F P +++F S+P H+RMRAEF +WH+ +LYHIMF Sbjct: 2 TLPIEQYSDLLAKKTENLTALLKPFNPPAIEVFASKPSHFRMRAEFRVWHEEGELYHIMF 61 Query: 64 DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIY 123 + TK R R+D F S LIN +M ++A I+ LL KLFQIDYL++ S + V+++Y Sbjct: 62 NPATKARYRVDSFPIASELINHMMTALLAEIKGNELLTRKLFQIDYLSTLSGEIAVSMLY 121 Query: 124 HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQI 183 H+ L++ W E A L+ L + +++Q+IGRANK KI LD DYV+E L V G+ +YRQ+ Sbjct: 122 HKSLNEEWVEQANALKSRLEQQGFKVQIIGRANKQKIALDCDYVEEILPVHGKNYVYRQV 181 Query: 184 ENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 ENSFTQPNA +N+ MLEW TK +GDLLELYCGNGNFS+ LA +F +VLA EI+K S Sbjct: 182 ENSFTQPNAEMNIKMLEWARNCTKNSEGDLLELYCGNGNFSIALAENFRKVLATEISKSS 241 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 V++A+YNI N + N++I+RMS++EFTQAM R F RLK ID+++Y TIFVDPPR+G Sbjct: 242 VQSAQYNIEKNGIVNLQIIRMSAEEFTQAMNGVRAFYRLKGIDLNAYECNTIFVDPPRAG 301 Query: 304 LDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363 LD AT+ MVQAY ILYISCNP++L +L LS TH IE+ ALFDQFPYT H+E GV L+ Sbjct: 302 LDQATLNMVQAYERILYISCNPETLAENLQQLSQTHRIEKAALFDQFPYTHHIESGVWLI 361 Query: 364 RK 365 RK Sbjct: 362 RK 363 >gi|90581101|ref|ZP_01236901.1| tRNA (uracil-5-)-methyltransferase [Vibrio angustum S14] gi|90437797|gb|EAS62988.1| tRNA (uracil-5-)-methyltransferase [Vibrio angustum S14] Length = 368 Score = 432 bits (1110), Expect = e-119, Method: Composition-based stats. Identities = 198/358 (55%), Positives = 266/358 (74%), Gaps = 2/358 (0%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69 Y+QQL EK +R++ + + F P L++F S HYRMRAEF +WH+G+DL++IMF+Q+T+E Sbjct: 11 YQQQLDEKAERIQNIFVDFDTPELEVFASPAEHYRMRAEFRVWHEGEDLFYIMFNQETRE 70 Query: 70 RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDD 129 + R+D F S LIN LM ++ I+ LR KLFQ+D+L++ S + +V+++YHR LDD Sbjct: 71 KYRVDQFPAASRLINDLMPMLVDAIKPIKALRHKLFQVDFLSTLSGEILVSMLYHRQLDD 130 Query: 130 AWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQ 189 W A +L+ L+ +++ LIGRA K KI LD+DYV E+L V RTL Y+Q+ENSFTQ Sbjct: 131 EWTAEAKQLKQRLNDEGFKLNLIGRARKMKIVLDQDYVIEQLKVHDRTLTYKQVENSFTQ 190 Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249 PN + MLEW + T+ +GDLLELYCGNGNFSL LA++F+RVLA E+AKPSV++A+Y Sbjct: 191 PNGEVAQKMLEWAVDCTQDSEGDLLELYCGNGNFSLALAQNFERVLATELAKPSVDSAQY 250 Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGLDDA 307 NIA N+++NV+I+RMS+++FT AM +REF RLKD +D+ SY TIFVDPPRSG+D+ Sbjct: 251 NIAVNNIDNVQIIRMSAEDFTDAMEGKREFRRLKDQNVDLQSYNCNTIFVDPPRSGMDEG 310 Query: 308 TVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 T MVQ Y I+YISCNP++L +L IL TH I R ALFDQFPYT HME GVLL RK Sbjct: 311 TCRMVQGYERIMYISCNPETLKENLDILCETHKITRFALFDQFPYTHHMEAGVLLERK 368 >gi|260767615|ref|ZP_05876551.1| tRNA (uracil-5-)-methyltransferase [Vibrio furnissii CIP 102972] gi|260617515|gb|EEX42698.1| tRNA (uracil-5-)-methyltransferase [Vibrio furnissii CIP 102972] Length = 376 Score = 432 bits (1110), Expect = e-119, Method: Composition-based stats. Identities = 206/360 (57%), Positives = 267/360 (74%), Gaps = 2/360 (0%) Query: 7 IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66 + Y+ QL +KV RL M A+QVP L++F S HYRMRAEF +WHDGDD+Y+IMF+ + Sbjct: 15 PNHYQAQLDDKVTRLTDMFQAYQVPELEVFESPQQHYRMRAEFRVWHDGDDMYYIMFNPE 74 Query: 67 TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL 126 T+E+ R+D F S LIN LM +M ++ + LR KLFQ+D+L++ S + +V+L+YHR Sbjct: 75 TREKYRVDQFPAASRLINDLMPLLMDAMKGDDTLRRKLFQVDFLSTLSGEVLVSLLYHRQ 134 Query: 127 LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS 186 LDDAW A +L+ L+ + + LIGRA K KI LDRD+V E+L V G+ IY+Q+ENS Sbjct: 135 LDDAWTAAAKKLKQRLNDEGFNLNLIGRARKMKIVLDRDFVVEKLHVNGQPYIYQQVENS 194 Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246 FTQPN + MLEW + T+ QGDLLELYCGNGNFSL LA++FDRVLA E+AKPSVE+ Sbjct: 195 FTQPNGKVAEKMLEWAVDCTQESQGDLLELYCGNGNFSLALAQNFDRVLATELAKPSVES 254 Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGL 304 A+YNIAAN ++NV+I+RMS++EFTQAM +REFNRLKD +D+ SY TIFVDPPR+G+ Sbjct: 255 AQYNIAANAIDNVQIIRMSAEEFTQAMEGKREFNRLKDAGVDLKSYNCNTIFVDPPRAGM 314 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D T MVQ Y ILYISCNP++L +L +L TH + R ALFDQFPYT HME GV+L R Sbjct: 315 DIDTCKMVQGYERILYISCNPETLKENLDVLCETHRVTRFALFDQFPYTHHMEAGVMLER 374 >gi|269968661|ref|ZP_06182658.1| tRNA (uracil-5-)-methyltransferase [Vibrio alginolyticus 40B] gi|269826748|gb|EEZ81085.1| tRNA (uracil-5-)-methyltransferase [Vibrio alginolyticus 40B] Length = 369 Score = 431 bits (1109), Expect = e-119, Method: Composition-based stats. Identities = 200/361 (55%), Positives = 266/361 (73%), Gaps = 2/361 (0%) Query: 7 IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66 +Y++QLAEKV+RL M + VP L++F S HYRMRAEF +WH+G+DLY+IMF+Q+ Sbjct: 8 PQRYQEQLAEKVERLTDMFAPYNVPELEVFESPEQHYRMRAEFRVWHEGEDLYYIMFNQE 67 Query: 67 TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL 126 T+E+ R+D F S LIN LM ++ ++ LR KLFQ+D+L++ S + +V+L+YHR Sbjct: 68 TREKYRVDQFPAASRLINDLMPLLVEAMKDNDSLRRKLFQVDFLSTLSGEILVSLLYHRQ 127 Query: 127 LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS 186 LD+ W E A L+ L+ + + +IGRA K KI LDRDYV E+L V G++ IY+Q+ENS Sbjct: 128 LDEEWIENAKALKQRLNDEGFNLNIIGRARKMKIVLDRDYVIEKLDVNGQSYIYQQVENS 187 Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246 FTQPN + MLEW + T+ GDLLELYCGNGNFSL LA++FDRVLA E+AKPSV + Sbjct: 188 FTQPNGKVAEKMLEWAVDCTQESTGDLLELYCGNGNFSLALAQNFDRVLATELAKPSVVS 247 Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGL 304 A+YNIAAN ++NV+I+R+S++EFTQA+ +REF RL+D +D+ SY TIFVDPPR+G+ Sbjct: 248 AQYNIAANKIDNVQILRLSAEEFTQAIEGKREFRRLQDAGVDLKSYNCNTIFVDPPRAGM 307 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D T MVQ Y I+YISCNP++L +L IL TH + R ALFDQFPYT HME GVLL R Sbjct: 308 DVDTCKMVQGYERIMYISCNPETLKENLDILCETHNVTRFALFDQFPYTHHMEAGVLLER 367 Query: 365 K 365 K Sbjct: 368 K 368 >gi|54310518|ref|YP_131538.1| tRNA (uracil-5-)-methyltransferase [Photobacterium profundum SS9] gi|50401422|sp|Q6LLU2|TRMA_PHOPR RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|46914961|emb|CAG21736.1| putative tRNA (uracil-5-)-methyltransferase [Photobacterium profundum SS9] Length = 368 Score = 431 bits (1109), Expect = e-119, Method: Composition-based stats. Identities = 199/366 (54%), Positives = 265/366 (72%), Gaps = 2/366 (0%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHI 61 S L Y+QQL EK +R++ + F+ P L++F S HYRMRAEF +WH+G+DLY++ Sbjct: 3 STALNTAGYQQQLDEKAERIQNIFEDFETPELEVFASPAEHYRMRAEFRMWHEGEDLYYV 62 Query: 62 MFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTL 121 MF+Q+T+E+ R+D F S LIN LM ++ ++ LR KLFQ+D+L++ S + +V+L Sbjct: 63 MFNQETREKYRVDQFPAASRLINDLMPLLVEALKPSQTLRHKLFQVDFLSTLSGEILVSL 122 Query: 122 IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYR 181 +YHR LD+ W +L+ L+ + + +IGRA K KI DRDYV E+L V +TL Y+ Sbjct: 123 LYHRQLDEEWEVEIKKLKQCLNDEGFNLNIIGRARKMKIVADRDYVIEKLNVFDQTLTYK 182 Query: 182 QIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241 Q+ENSFTQPN + MLEW + T+ GDLLELYCGNGNFSL LA++F+RVLA E+AK Sbjct: 183 QVENSFTQPNGEVAQKMLEWAVDCTQDSDGDLLELYCGNGNFSLALAKNFERVLATELAK 242 Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK--DIDIHSYRFKTIFVDP 299 PSVE+A+YNIA N+++NV+IVRMS+++FT AM +REF RLK ++D+ SY TIFVDP Sbjct: 243 PSVESAQYNIAVNNIDNVQIVRMSAEDFTDAMAGKREFRRLKAQNVDLQSYNCNTIFVDP 302 Query: 300 PRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359 PRSG+D+ T MVQ Y I+YISCNPD+L +L ILS TH I R ALFDQFPYT HME G Sbjct: 303 PRSGMDEGTCRMVQGYERIMYISCNPDTLKENLEILSQTHKITRFALFDQFPYTHHMEAG 362 Query: 360 VLLVRK 365 VLL RK Sbjct: 363 VLLERK 368 >gi|269961495|ref|ZP_06175858.1| tRNA (uracil-5-)-methyltransferase [Vibrio harveyi 1DA3] gi|269833724|gb|EEZ87820.1| tRNA (uracil-5-)-methyltransferase [Vibrio harveyi 1DA3] Length = 369 Score = 431 bits (1109), Expect = e-119, Method: Composition-based stats. Identities = 201/361 (55%), Positives = 266/361 (73%), Gaps = 2/361 (0%) Query: 7 IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66 +Y++QLAEKV+RL M + VP L++F S HYRMRAEF +WH+G+DLY+IMF+Q+ Sbjct: 8 PQRYQEQLAEKVERLTDMFAPYNVPELEVFESPEQHYRMRAEFRVWHEGEDLYYIMFNQE 67 Query: 67 TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL 126 T+E+ R+D F S LIN LM ++ ++ LR KLFQ+D+L++ S + +V+L+YHR Sbjct: 68 TREKYRVDQFPAASRLINDLMPLLVEAMKDNESLRRKLFQVDFLSTLSGEILVSLLYHRQ 127 Query: 127 LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS 186 LD+ W E A L+ L+ + + +IGRA K KI LDRDYV E+L V G++ IY+Q+ENS Sbjct: 128 LDEEWIENAKALKQRLNDEGFNLNIIGRARKMKIVLDRDYVIEKLDVNGQSYIYQQVENS 187 Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246 FTQPN + MLEW + T+ GDLLELYCGNGNFSL LA++FDRVLA E+AKPSV + Sbjct: 188 FTQPNGKVAEKMLEWAVDCTQESTGDLLELYCGNGNFSLALAQNFDRVLATELAKPSVVS 247 Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGL 304 A+YNIAAN ++NV+I+R+S++EFTQA+ +REF RL+D +D+ SY TIFVDPPRSG+ Sbjct: 248 AQYNIAANEIDNVQILRLSAEEFTQAIEGKREFRRLQDAGVDLKSYNCNTIFVDPPRSGM 307 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D T MVQ Y I+YISCNP++L +L IL TH + R ALFDQFPYT HME GVLL R Sbjct: 308 DVDTCKMVQGYERIMYISCNPETLKENLDILCETHNVTRFALFDQFPYTHHMEAGVLLER 367 Query: 365 K 365 K Sbjct: 368 K 368 >gi|284009190|emb|CBA76252.1| tRNA (uracil-5)-methyltransferase [Arsenophonus nasoniae] Length = 367 Score = 431 bits (1109), Expect = e-119, Method: Composition-based stats. Identities = 215/366 (58%), Positives = 283/366 (77%) Query: 1 MSGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60 M L I QY QL EK+ L +ML + P +IFRS+ +YRMRAEF +WH+G DL+H Sbjct: 1 MLNNLSITQYNSQLTEKIKYLNSIMLPYNAPKPEIFRSDFSYYRMRAEFRLWHEGQDLFH 60 Query: 61 IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVT 120 IMFDQ TK+R+RID LIN +M+ ++ I+ + +LR KLFQ+DYL++ S++ IV+ Sbjct: 61 IMFDQTTKQRIRIDQLPIACKLINQMMVALIPLIKSKSVLRYKLFQVDYLSTLSNKIIVS 120 Query: 121 LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIY 180 LIYH+ L++ W E A +LR AL + + IQLIGRA KTKI L++D++DE L +AG+++IY Sbjct: 121 LIYHKKLNEEWIEQAKQLRIALINQGFDIQLIGRAAKTKIILEQDHIDEVLPIAGKSIIY 180 Query: 181 RQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240 RQIENSFTQPNAGIN+ MLEW + TK +GDLLELYCGNGNFS+ LA++F+R+LA EIA Sbjct: 181 RQIENSFTQPNAGINIKMLEWAIDCTKNAKGDLLELYCGNGNFSIALAQNFNRILATEIA 240 Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300 KPSV AA+YNI AN +NNVKI+RMS+++FTQA++ ER+F RL+ +D+ SY+ TI +DPP Sbjct: 241 KPSVAAAQYNIEANKINNVKIIRMSAEDFTQAIQGERQFRRLEGVDLMSYKCNTILIDPP 300 Query: 301 RSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360 R GLD+ TV +VQ YP ILYISCNP++LC +L+IL+ TH I RLALFDQFPYT H+ECGV Sbjct: 301 RCGLDEKTVALVQKYPRILYISCNPNTLCHNLNILNKTHKIHRLALFDQFPYTHHIECGV 360 Query: 361 LLVRKP 366 LL K Sbjct: 361 LLENKD 366 >gi|293391475|ref|ZP_06635809.1| hypothetical protein D7S_1630 [Aggregatibacter actinomycetemcomitans D7S-1] gi|290952009|gb|EFE02128.1| hypothetical protein D7S_1630 [Aggregatibacter actinomycetemcomitans D7S-1] Length = 365 Score = 431 bits (1108), Expect = e-119, Method: Composition-based stats. Identities = 207/362 (57%), Positives = 265/362 (73%) Query: 4 TLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63 L +++Y LAEK +L + F P LQ+F S H+RMRAEF IWH+ DD YHIMF Sbjct: 3 NLPVERYAALLAEKQKKLTALFAPFDAPELQVFASPTQHFRMRAEFRIWHEQDDFYHIMF 62 Query: 64 DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIY 123 DQQ+K+R R+D F S LIN +M ++ ++ + +L +LFQIDYL++QS Q IV+L+Y Sbjct: 63 DQQSKQRYRVDRFPVASELINRMMTALLPLLKQQTVLHHRLFQIDYLSTQSQQIIVSLLY 122 Query: 124 HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQI 183 H+ LDDAW+ LR L + + +QLIGRA+K KICL++DYVDE L V + +YRQ+ Sbjct: 123 HKTLDDAWQTATRTLRSQLQQQGFNVQLIGRASKQKICLEQDYVDEILNVHDKQYVYRQV 182 Query: 184 ENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 ENSFTQPNA +N MLEW + T+ GDLLELYCGNGNFS+ LA++F VLA EIAKPS Sbjct: 183 ENSFTQPNAAVNSKMLEWAVDCTRNSHGDLLELYCGNGNFSIALAQNFRNVLATEIAKPS 242 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 V AA++NIAAN V N++I+RMS++EFTQAM+ R FNRLK ID+ +Y+ TIFVDPPR+G Sbjct: 243 VAAAQFNIAANKVENLQIIRMSAEEFTQAMQGVRAFNRLKGIDLSAYQCNTIFVDPPRAG 302 Query: 304 LDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363 LD+ T+ +VQ Y ILYISCNP +LC +L L TH IE+ ALFDQFPYT HME GV LV Sbjct: 303 LDEETLKLVQQYERILYISCNPHTLCDNLQTLCQTHRIEKAALFDQFPYTEHMEAGVWLV 362 Query: 364 RK 365 RK Sbjct: 363 RK 364 >gi|323495308|ref|ZP_08100388.1| tRNA (uracil-5-)-methyltransferase [Vibrio brasiliensis LMG 20546] gi|323310443|gb|EGA63627.1| tRNA (uracil-5-)-methyltransferase [Vibrio brasiliensis LMG 20546] Length = 369 Score = 431 bits (1108), Expect = e-119, Method: Composition-based stats. Identities = 199/360 (55%), Positives = 268/360 (74%), Gaps = 2/360 (0%) Query: 7 IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66 +Y++QLAEKVDRL +M ++ VP L++F S HYRMRAEF +WH+G+DLY+IMF+Q+ Sbjct: 8 PQRYQEQLAEKVDRLNEMFASYNVPELEVFESPEQHYRMRAEFRVWHEGEDLYYIMFNQE 67 Query: 67 TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL 126 T+E+ R+D F S LIN LM ++ ++ LR KLFQ+D+L++ S + +V+L+YHR Sbjct: 68 TREKYRVDQFPVASRLINDLMPLLIEAMKGSDSLRRKLFQVDFLSTLSGEILVSLLYHRQ 127 Query: 127 LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS 186 LDD W + A L+ L+ + + +IGRA K KI LDRDYV E+L V G+ +Y+Q+ENS Sbjct: 128 LDDEWTQNAKALKQRLNDEGFNLNIIGRARKMKIVLDRDYVIEKLDVNGQPYVYQQVENS 187 Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246 FTQPN + MLEW + T+ GDLLELYCGNGNFSL LA++FDRVLA E+AKPSVE+ Sbjct: 188 FTQPNGKVAEKMLEWAVDCTQESTGDLLELYCGNGNFSLALAQNFDRVLATELAKPSVES 247 Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGL 304 A+YNI AN+++NV+I+R+S++EFTQA+ +REF RLKD +D++SY TIFVDPPR+G+ Sbjct: 248 AQYNIKANNIDNVQILRLSAEEFTQAIEGKREFRRLKDAGVDLNSYNCNTIFVDPPRAGM 307 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D T MVQ Y I+YISCNP++L +L IL TH + R ALFDQFP+T HME GVLL R Sbjct: 308 DIDTCKMVQGYERIMYISCNPETLKENLDILCETHKVTRFALFDQFPFTHHMEAGVLLER 367 >gi|90414701|ref|ZP_01222672.1| tRNA (uracil-5-)-methyltransferase [Photobacterium profundum 3TCK] gi|90324243|gb|EAS40818.1| tRNA (uracil-5-)-methyltransferase [Photobacterium profundum 3TCK] Length = 368 Score = 431 bits (1108), Expect = e-118, Method: Composition-based stats. Identities = 198/366 (54%), Positives = 265/366 (72%), Gaps = 2/366 (0%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHI 61 S L Y+QQL EK +R++ + F+ P L++F S HYRMRAEF +WH+G+DLY++ Sbjct: 3 STALNTAGYQQQLDEKAERIQNIFEDFETPELEVFASPAEHYRMRAEFRMWHEGEDLYYV 62 Query: 62 MFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTL 121 MF+Q+T+E+ R+D F S LIN LM ++ ++ LR KLFQ+D+L++ S + +V+L Sbjct: 63 MFNQETREKYRVDQFPAASRLINDLMPLLIEALKPNQALRHKLFQVDFLSTLSGEILVSL 122 Query: 122 IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYR 181 +YHR LD+ W +L+ L+ + + +IGRA K KI DRDYV E+L V + L Y+ Sbjct: 123 LYHRQLDEEWEIEIKKLKQCLNDEGFNLNIIGRARKMKIVADRDYVIEKLNVFDQPLTYK 182 Query: 182 QIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241 Q+ENSFTQPN + MLEW + T+ +GDLLELYCGNGNFSL LA++F+RVLA E+AK Sbjct: 183 QVENSFTQPNGEVAQKMLEWAVDCTQDSEGDLLELYCGNGNFSLALAKNFERVLATELAK 242 Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK--DIDIHSYRFKTIFVDP 299 PSVE+A+YNIA N+++NV+IVRMS+++FT AM +REF RLK ++D+ SY TIFVDP Sbjct: 243 PSVESAQYNIAVNNIDNVQIVRMSAEDFTDAMAGKREFRRLKAQNVDLQSYNCNTIFVDP 302 Query: 300 PRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359 PRSG+D+ T MVQ Y I+YISCNPD+L +L ILS TH I R ALFDQFPYT HME G Sbjct: 303 PRSGMDEGTCRMVQGYERIMYISCNPDTLKENLEILSQTHKITRFALFDQFPYTHHMEAG 362 Query: 360 VLLVRK 365 VLL RK Sbjct: 363 VLLERK 368 >gi|52426422|ref|YP_089559.1| tRNA (uracil-5-)-methyltransferase [Mannheimia succiniciproducens MBEL55E] gi|115305869|sp|Q65PY6|TRMA_MANSM RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|52308474|gb|AAU38974.1| TrmA protein [Mannheimia succiniciproducens MBEL55E] Length = 364 Score = 431 bits (1108), Expect = e-118, Method: Composition-based stats. Identities = 204/361 (56%), Positives = 265/361 (73%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L I++Y + L +K +L ++ F P L +F S +YRMRAEF +WHD DLYHIMF+ Sbjct: 4 LPIEKYSELLTKKQQKLTALLAPFNAPELSVFVSPVQNYRMRAEFRVWHDKGDLYHIMFN 63 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTK+R R+D F SLLIN +M ++ ++ + +L KLFQIDYL++ S++ IV+L+YH Sbjct: 64 QQTKQRYRVDCFPIASLLINRMMENLIPLLKEQEILTKKLFQIDYLSTLSNKIIVSLLYH 123 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + L + W+ A L+ L + +Q++GRA K KICL+RDY DE L V GR +YRQIE Sbjct: 124 KTLTEEWQAAAQALKVRLEKLDFDVQIVGRATKQKICLERDYADEVLPVNGRNYVYRQIE 183 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N MLEW + TK GDLLELYCGNGNFS+ LA++F +VLA EIAKPSV Sbjct: 184 NSFTQPNAAVNCKMLEWAIGCTKNSSGDLLELYCGNGNFSIALAQNFRKVLATEIAKPSV 243 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA++NIA N ++N++I+RMS++EFTQAM REFNRLK ID+ SY TIFVDPPR+GL Sbjct: 244 AAAQFNIAENGIDNLQIIRMSAEEFTQAMNGVREFNRLKGIDLKSYECNTIFVDPPRAGL 303 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D TV +VQ Y ILYISCNP++LC +L+ L+ TH IE+ ALFDQFPYT HME GV L+R Sbjct: 304 DPDTVKLVQNYDRILYISCNPNTLCNNLTELTKTHRIEKAALFDQFPYTDHMESGVWLIR 363 Query: 365 K 365 K Sbjct: 364 K 364 >gi|309973661|gb|ADO96862.1| tRNA m(5)U54 methyltransferase [Haemophilus influenzae R2846] Length = 377 Score = 431 bits (1108), Expect = e-118, Method: Composition-based stats. Identities = 205/365 (56%), Positives = 268/365 (73%) Query: 1 MSGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60 +S L I QY + L +K+++L ++ F P++Q+F S HYRMRAEF IWH+ DD YH Sbjct: 13 ISMQLPISQYNELLQKKLEKLTALLRPFNAPDIQVFDSPTSHYRMRAEFRIWHEQDDFYH 72 Query: 61 IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVT 120 IMFDQ T +R R+D F S+LIN +M ++ ++ + +L KLFQIDYL++ S++ IV+ Sbjct: 73 IMFDQATLQRYRVDEFPIASMLINRMMQTLLPLLKQQEVLHKKLFQIDYLSTLSNKIIVS 132 Query: 121 LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIY 180 L+YH+ L + W A L+D L + + +Q+IGRA+K KIC ++DYVDE L V GR +Y Sbjct: 133 LLYHKTLTEEWESAAKNLKDLLEKQGFNVQIIGRASKQKICFEQDYVDEVLPVNGRNYVY 192 Query: 181 RQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240 RQ+ENSFTQPNA +N MLEW + T+ +GDLLELYCGNGNFS+ LA++F +VLA EIA Sbjct: 193 RQVENSFTQPNATVNCKMLEWAIDCTQNSEGDLLELYCGNGNFSIALAQNFRKVLATEIA 252 Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300 KPSV AA++NIA N V+N++I+RMS++EFTQAM R FNRLK ID+ SY TIFVDPP Sbjct: 253 KPSVAAAQFNIAENKVDNLQIIRMSAEEFTQAMNGVRAFNRLKGIDLKSYECNTIFVDPP 312 Query: 301 RSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360 R+GLD TV +VQ Y ILYISCNP +LC +L LS TH IE+ ALFDQFPYT HME GV Sbjct: 313 RAGLDPDTVKLVQNYDRILYISCNPHTLCDNLVELSKTHRIEKAALFDQFPYTDHMESGV 372 Query: 361 LLVRK 365 L+RK Sbjct: 373 WLIRK 377 >gi|153835643|ref|ZP_01988310.1| tRNA (uracil-5-)-methyltransferase [Vibrio harveyi HY01] gi|148867739|gb|EDL66997.1| tRNA (uracil-5-)-methyltransferase [Vibrio harveyi HY01] Length = 369 Score = 430 bits (1107), Expect = e-118, Method: Composition-based stats. Identities = 202/361 (55%), Positives = 266/361 (73%), Gaps = 2/361 (0%) Query: 7 IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66 +Y++QLAEKV+RL M + VP L++F S HYRMRAEF +WH+G+DLY+IMF+Q+ Sbjct: 8 PQRYQEQLAEKVERLNDMFAPYNVPELEVFESPEQHYRMRAEFRVWHEGEDLYYIMFNQE 67 Query: 67 TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL 126 T+E+ R+D F S LIN LM ++ ++ LR KLFQ+D+L++ S + +V+L+YHR Sbjct: 68 TREKYRVDQFPAASRLINDLMPLLVEAMKDNESLRRKLFQVDFLSTLSGEILVSLLYHRQ 127 Query: 127 LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS 186 LD+ W E A L+ L+ + + +IGRA K KI LDRDYV E+L V G++ IY+Q+ENS Sbjct: 128 LDEEWIENAKALKQRLNDEGFNLNIIGRARKMKIVLDRDYVIEKLDVNGQSYIYQQVENS 187 Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246 FTQPN + MLEW + T+ GDLLELYCGNGNFSL LA++FDRVLA E+AKPSV + Sbjct: 188 FTQPNGKVAEKMLEWAVDCTQESTGDLLELYCGNGNFSLALAQNFDRVLATELAKPSVVS 247 Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGL 304 A+YNIAAN ++NV+I+R+S++EFTQA+ +REF RL+D +D+ SY TIFVDPPRSG+ Sbjct: 248 AQYNIAANEIDNVQILRLSAEEFTQAIEGKREFRRLQDAGVDLKSYNCNTIFVDPPRSGM 307 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D T MVQ Y I+YISCNPD+L +L IL TH + R ALFDQFPYT HME GVLL R Sbjct: 308 DVDTCKMVQGYERIMYISCNPDTLKENLDILCETHNVTRFALFDQFPYTHHMEAGVLLER 367 Query: 365 K 365 K Sbjct: 368 K 368 >gi|89074503|ref|ZP_01160980.1| tRNA (uracil-5-)-methyltransferase [Photobacterium sp. SKA34] gi|89049791|gb|EAR55341.1| tRNA (uracil-5-)-methyltransferase [Photobacterium sp. SKA34] Length = 368 Score = 430 bits (1107), Expect = e-118, Method: Composition-based stats. Identities = 202/368 (54%), Positives = 271/368 (73%), Gaps = 3/368 (0%) Query: 1 MSGTLL-IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLY 59 M+ T+L Y+QQL EK +R++ + F P L++F S HYRMRAEF +WH+G+DL+ Sbjct: 1 MTSTILNTADYQQQLDEKTERIQNICADFDTPELEVFASPAEHYRMRAEFRVWHEGEDLF 60 Query: 60 HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119 +IMF+Q+T+E+ R+D F S LIN LM ++ I+ LR KLFQ+D+L++ S + +V Sbjct: 61 YIMFNQETREKYRVDQFPAASRLINDLMPMLVDAIKPIKALRHKLFQVDFLSTLSGEILV 120 Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179 +++YHR LDD W A +L+ L+ +++ LIGRA K KI LD+DYV E+L V RTL Sbjct: 121 SMLYHRQLDDEWTAEAKQLKQRLNDEGFKLNLIGRARKMKIVLDQDYVIEQLKVHDRTLT 180 Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEI 239 Y+Q+ENSFTQPN + MLEW + T+ +GDLLELYCGNGNFSL LA++F+RVLA E+ Sbjct: 181 YKQVENSFTQPNGEVAQKMLEWAVDCTQDSKGDLLELYCGNGNFSLALAQNFERVLATEL 240 Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFV 297 AKPSV++A+YNIA N+++NV+I+RMS+++FT AM +REF RLKD +D+ SY TIFV Sbjct: 241 AKPSVDSAQYNIAVNNIDNVQIIRMSAEDFTDAMEGKREFRRLKDQNVDLQSYNCNTIFV 300 Query: 298 DPPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHME 357 DPPRSG+D+ T MVQ Y I+YISCNP++L +L IL TH I R ALFDQFPYT HME Sbjct: 301 DPPRSGMDEGTCRMVQGYERIMYISCNPETLKENLDILCQTHKITRFALFDQFPYTHHME 360 Query: 358 CGVLLVRK 365 GVLLVRK Sbjct: 361 AGVLLVRK 368 >gi|213857560|ref|ZP_03384531.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 352 Score = 430 bits (1107), Expect = e-118, Method: Composition-based stats. Identities = 229/347 (65%), Positives = 275/347 (79%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L +QYE QLAEKV RL+ MM F ++FRS HYRMRAEF +WHDGD+LYHIMFD Sbjct: 6 LPTEQYEAQLAEKVARLQSMMAPFSGLVPEVFRSPVSHYRMRAEFRLWHDGDNLYHIMFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTK R+R+D F S LIN LM M+A +R LR KLFQIDYLT+ S+QA+V+L+YH Sbjct: 66 QQTKSRIRVDTFPAASQLINTLMKAMIAGVRDNHALRHKLFQIDYLTTLSNQAVVSLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + LD+ WRE A LRDAL A+ + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E Sbjct: 126 KKLDEEWREAATALRDALRAQGLNVHLIGRATKTKIELDQDYIDERLPVAGKEIIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+ MLEW L TK +GDLLELYCGNGNFSL LAR+F+RVLA EIAKPSV Sbjct: 186 NSFTQPNAAMNIQMLEWALEVTKDSKGDLLELYCGNGNFSLALARNFNRVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAANH++NV+I+RM+++EFTQAM REFNRL+ ID+ Y+ +TIFVDPPRSGL Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKRYQCETIFVDPPRSGL 305 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFP 351 D T MVQAYP ILYISCNP++LC++L LS THT+ RLALFDQFP Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHTVSRLALFDQFP 352 >gi|156972610|ref|YP_001443517.1| tRNA (uracil-5-)-methyltransferase [Vibrio harveyi ATCC BAA-1116] gi|166988122|sp|A7MXY6|TRMA_VIBHB RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|156524204|gb|ABU69290.1| hypothetical protein VIBHAR_00262 [Vibrio harveyi ATCC BAA-1116] Length = 369 Score = 430 bits (1106), Expect = e-118, Method: Composition-based stats. Identities = 201/361 (55%), Positives = 266/361 (73%), Gaps = 2/361 (0%) Query: 7 IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66 +Y++QLAEKV+RL M + VP L++F S HYRMRAEF +WH+G+DLY+IMF+Q+ Sbjct: 8 PQRYQEQLAEKVERLNDMFAPYNVPELEVFESPEQHYRMRAEFRVWHEGEDLYYIMFNQE 67 Query: 67 TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL 126 T+E+ R+D F S LIN LM ++ ++ LR KLFQ+D+L++ S + +V+L+YHR Sbjct: 68 TREKYRVDQFPAASRLINDLMPLLVEAMKDNESLRRKLFQVDFLSTLSGEILVSLLYHRQ 127 Query: 127 LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS 186 LD+ W E A L+ L+ + + +IGRA K KI LDRDYV E+L V G++ IY+Q+ENS Sbjct: 128 LDEEWIENAKALKQRLNDEGFNLNIIGRARKMKIVLDRDYVIEKLDVNGQSYIYQQVENS 187 Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246 FTQPN + MLEW + T+ GDLLELYCGNGNFSL LA++FDRVLA E+AKPSV + Sbjct: 188 FTQPNGKVAEKMLEWAVDCTQESTGDLLELYCGNGNFSLALAQNFDRVLATELAKPSVVS 247 Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGL 304 A+YNIAAN ++NV+I+R+S++EFTQA+ +REF RL+D +D+ SY TIFVDPPRSG+ Sbjct: 248 AQYNIAANEIDNVQILRLSAEEFTQAIEGKREFRRLQDAGVDLKSYNCNTIFVDPPRSGM 307 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D T MVQ Y I+YISCNP++L +L IL TH + R ALFDQFPYT HME GVLL R Sbjct: 308 DVDTCKMVQGYERIMYISCNPETLKENLDILCETHNVTRFALFDQFPYTHHMEAGVLLER 367 Query: 365 K 365 K Sbjct: 368 K 368 >gi|254292223|ref|ZP_04962988.1| tRNA (uracil-5-)-methyltransferase [Vibrio cholerae AM-19226] gi|150421859|gb|EDN13841.1| tRNA (uracil-5-)-methyltransferase [Vibrio cholerae AM-19226] Length = 369 Score = 430 bits (1106), Expect = e-118, Method: Composition-based stats. Identities = 202/362 (55%), Positives = 267/362 (73%), Gaps = 2/362 (0%) Query: 7 IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66 + Y+ QLA+K+ RL+ M + +P L++F S +YRMRAEF IWH+GDD+Y+IMF+Q+ Sbjct: 8 PELYQAQLADKIARLKAMFADYSMPELEVFESPVANYRMRAEFRIWHEGDDMYYIMFNQE 67 Query: 67 TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL 126 T+E+ R+D F S LIN LM +M ++ P+LR KLFQ+D+L++ S + +V+L+YHR Sbjct: 68 TREKYRVDQFPAASRLINDLMPLLMDAMKGSPILRHKLFQVDFLSTLSGEILVSLLYHRQ 127 Query: 127 LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS 186 L + W A L+ L+ + + LIGRA K K+ LDRDYV E+L V G+ +Y+Q+ENS Sbjct: 128 LSEEWITAAQALKQRLNDEGFNLNLIGRARKMKVVLDRDYVVEKLQVNGQPYVYKQVENS 187 Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246 FTQPNA + MLEW + T +GDLLELYCGNGNFSL LA++F+RVLA E+AKPSVEA Sbjct: 188 FTQPNAKVAEKMLEWAVDCTHESKGDLLELYCGNGNFSLALAQNFERVLATELAKPSVEA 247 Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGL 304 A++NIAAN + NV+I+RMS++EFTQAM +REFNRLKD +D+ SYR TIFVDPPRSG+ Sbjct: 248 AQFNIAANQIGNVQIIRMSAEEFTQAMEGKREFNRLKDAGVDLQSYRCNTIFVDPPRSGM 307 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D T MVQ Y ILYISCNP++L +L +L TH + R ALFDQFPYT HME GV+L R Sbjct: 308 DIDTCKMVQGYERILYISCNPETLKENLQVLGETHQVVRFALFDQFPYTHHMEAGVMLER 367 Query: 365 KP 366 K Sbjct: 368 KK 369 >gi|261249984|ref|ZP_05942561.1| tRNA (Uracil54-C5-)-methyltransferase [Vibrio orientalis CIP 102891] gi|260939488|gb|EEX95473.1| tRNA (Uracil54-C5-)-methyltransferase [Vibrio orientalis CIP 102891] Length = 369 Score = 430 bits (1106), Expect = e-118, Method: Composition-based stats. Identities = 201/358 (56%), Positives = 267/358 (74%), Gaps = 2/358 (0%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69 Y++QLA+KVDRL +M ++ VP L++F S HYRMRAEF +WH+G+DLY+IMF+Q+T+E Sbjct: 11 YQEQLADKVDRLNEMFASYNVPELEVFESPEQHYRMRAEFRVWHEGEDLYYIMFNQETRE 70 Query: 70 RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDD 129 + R+D F S LIN LM ++ ++ LR KLFQ+D+L++ S + +V+L+YHR LDD Sbjct: 71 KYRVDQFPAASRLINDLMPLLVDAMKDNDSLRRKLFQVDFLSTLSGEILVSLLYHRQLDD 130 Query: 130 AWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQ 189 W + A L+ L+ + + +IGRA K KI LDRDYV E+L V G+ IY+Q+ENSFTQ Sbjct: 131 EWTQNAKALKQRLNDEGFNLNIIGRARKMKIVLDRDYVIEKLDVNGKPYIYQQVENSFTQ 190 Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249 PN + MLEW + T+ GDLLELYCGNGNFSL LA++FDRVLA E+AKPSV +A+Y Sbjct: 191 PNGKVAEKMLEWAVDCTQESTGDLLELYCGNGNFSLALAQNFDRVLATELAKPSVVSAQY 250 Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGLDDA 307 NIAAN ++NV+I+R+S++EFT+A+ +REF RLKD +D+HSY TIFVDPPRSG+D Sbjct: 251 NIAANKIDNVQILRLSAEEFTEAIEGKREFRRLKDAGVDLHSYNCNTIFVDPPRSGMDID 310 Query: 308 TVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 T MVQ Y I+YISCNP++L +L +L TH + R ALFDQFPYT HME GVLL RK Sbjct: 311 TCKMVQGYERIMYISCNPETLKENLDVLCETHNVTRFALFDQFPYTHHMEAGVLLERK 368 >gi|229520057|ref|ZP_04409485.1| tRNA (uracil-5-)-methyltransferase [Vibrio cholerae TM 11079-80] gi|229342845|gb|EEO07835.1| tRNA (uracil-5-)-methyltransferase [Vibrio cholerae TM 11079-80] Length = 369 Score = 430 bits (1106), Expect = e-118, Method: Composition-based stats. Identities = 203/362 (56%), Positives = 269/362 (74%), Gaps = 2/362 (0%) Query: 7 IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66 + Y+ QLA+K+ RL+ M + + +P L++F S +YRMRAEF IWH+GDD+Y+IMF+Q+ Sbjct: 8 PELYQAQLADKIARLKAMFVDYSMPELEVFESPVANYRMRAEFRIWHEGDDMYYIMFNQE 67 Query: 67 TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL 126 T+E+ R+D F S LIN LM +M ++ P+LR KLFQ+D+L++ S + +V+L+YHR Sbjct: 68 TREKYRVDQFPAASRLINDLMPLLMDAMKGSPILRHKLFQVDFLSTLSGEILVSLLYHRQ 127 Query: 127 LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS 186 L + W A L+ L+ + + LIGRA K K+ LDRDYV E+L V G+ IY+Q+ENS Sbjct: 128 LSEEWITAAQALKQRLNDEGFNLNLIGRARKMKVVLDRDYVVEKLQVNGQPYIYKQVENS 187 Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246 FTQPNA + MLEW + T+ +GDLLELYCGNGNFSL LA++F+RVLA E+AKPSVEA Sbjct: 188 FTQPNAKVAEKMLEWAVDCTQESKGDLLELYCGNGNFSLALAQNFERVLATELAKPSVEA 247 Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGL 304 A++NIAAN + NV+I+RMS++EFTQAM +REFNRLKD +D+ SYR TIFVDPPRSG+ Sbjct: 248 AQFNIAANQIGNVQIIRMSAEEFTQAMEGKREFNRLKDAGVDLQSYRCNTIFVDPPRSGM 307 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D T MVQ Y ILYISCNP++L +L +L TH + R ALFDQFPYT HME GV+L R Sbjct: 308 DIDTCKMVQGYERILYISCNPETLKENLQVLGETHQVVRFALFDQFPYTHHMEAGVMLER 367 Query: 365 KP 366 K Sbjct: 368 KK 369 >gi|165977424|ref|YP_001653017.1| tRNA (uracil-5-)-methyltransferase [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|226706004|sp|B0BU06|TRMA_ACTPJ RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|165877525|gb|ABY70573.1| tRNA (uracil-5-)-methyltransferase [Actinobacillus pleuropneumoniae serovar 3 str. JL03] Length = 368 Score = 430 bits (1105), Expect = e-118, Method: Composition-based stats. Identities = 201/367 (54%), Positives = 265/367 (72%), Gaps = 5/367 (1%) Query: 4 TLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHD-----GDDL 58 L I+QY LAEK L ++ F P L++F SE H+RMRAEF +WHD ++L Sbjct: 2 NLPIEQYADLLAEKAKNLTALLAPFNPPELEVFESETSHFRMRAEFRVWHDTNEVGENEL 61 Query: 59 YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAI 118 YHIMFDQ+TK+R R+D F + LIN +M ++A I+ LL KLFQ+DYL++ S + Sbjct: 62 YHIMFDQETKQRYRVDQFPIANHLINKMMSSLLAEIKGNELLTRKLFQVDYLSTLSGEIA 121 Query: 119 VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTL 178 V+++YH+ L++ W+ A L+ L + +++Q++GRA K KI LDRDYV+E L V GR L Sbjct: 122 VSMLYHKKLNEEWQAEAAALKARLEHQGFKVQILGRATKQKIALDRDYVEEVLPVDGRNL 181 Query: 179 IYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVE 238 IYRQ+ENSFTQPNA +N+ MLEW + T+ GDLLELYCGNGNFS+ LA +F +VLA E Sbjct: 182 IYRQVENSFTQPNAKMNIKMLEWARSCTRHSSGDLLELYCGNGNFSIALAENFRKVLATE 241 Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298 I+K SV++A+YNI N ++N++I+RMS++EFTQAM REFNRLK ID+ +Y TIFVD Sbjct: 242 ISKSSVQSAQYNIEQNGIDNLQIIRMSAEEFTQAMNGVREFNRLKGIDLKAYDCNTIFVD 301 Query: 299 PPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMEC 358 PPR+GLD T+ MVQAY ILYISCNP +L +L L+ TH IER ALFDQFPYT H+E Sbjct: 302 PPRAGLDQDTLNMVQAYERILYISCNPHTLADNLQQLTQTHRIERAALFDQFPYTHHVES 361 Query: 359 GVLLVRK 365 GV L+RK Sbjct: 362 GVWLIRK 368 >gi|148981485|ref|ZP_01816425.1| tRNA (uracil-5-)-methyltransferase [Vibrionales bacterium SWAT-3] gi|145960840|gb|EDK26172.1| tRNA (uracil-5-)-methyltransferase [Vibrionales bacterium SWAT-3] Length = 369 Score = 429 bits (1104), Expect = e-118, Method: Composition-based stats. Identities = 199/361 (55%), Positives = 264/361 (73%), Gaps = 2/361 (0%) Query: 7 IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66 +Y++QLAEK RL +M + VP L+++ S HYRMRAEF +WH+GDD+Y++MF+Q+ Sbjct: 8 PQRYQEQLAEKTKRLTEMFSEYNVPELEVYESPEQHYRMRAEFRVWHEGDDMYYVMFNQE 67 Query: 67 TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL 126 TKE+ R+D F S LIN LM ++ ++ LR KLFQ+D+L++ S + +V+L+YHR Sbjct: 68 TKEKYRVDQFPAASRLINDLMPLLVDAMKDNHSLRHKLFQVDFLSTLSGEILVSLLYHRQ 127 Query: 127 LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS 186 L + W + A L+ L+ + + LIGRA K KI LDRDYV E+L V G + IY+Q+ENS Sbjct: 128 LGEQWIQDAKALKQQLNDEGFNLNLIGRARKMKIVLDRDYVIEKLDVNGDSYIYQQVENS 187 Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246 FTQPN + MLEW + T+ +GDLLELYCGNGNFSL LA++F+RVLA E+AKPSVE+ Sbjct: 188 FTQPNGKVAEKMLEWAVDCTQDSKGDLLELYCGNGNFSLALAQNFERVLATELAKPSVES 247 Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK--DIDIHSYRFKTIFVDPPRSGL 304 A+YNIAAN ++NV+I+RMS+++FT AM +REF RL+ +ID+ SY TIFVDPPRSG+ Sbjct: 248 AQYNIAANKIDNVQIIRMSAEDFTVAMEGKREFRRLQQANIDLKSYNCNTIFVDPPRSGM 307 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D T MVQ Y I+YISCNP++L +L ILS TH I R ALFDQFPYT HME GV L R Sbjct: 308 DVDTCKMVQGYERIMYISCNPETLKENLEILSETHDITRFALFDQFPYTHHMEAGVFLER 367 Query: 365 K 365 K Sbjct: 368 K 368 >gi|209696286|ref|YP_002264217.1| tRNA (uracil-5-)-methyltransferase [Aliivibrio salmonicida LFI1238] gi|226706003|sp|B6ENT4|TRMA_ALISL RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|208010240|emb|CAQ80571.1| tRNA (uracil-5)-methyltransferase [Aliivibrio salmonicida LFI1238] Length = 368 Score = 429 bits (1103), Expect = e-118, Method: Composition-based stats. Identities = 204/361 (56%), Positives = 268/361 (74%), Gaps = 2/361 (0%) Query: 7 IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66 + Y+ QL EK + L M F VP L++F S +YRMRAEF IWH+GDD+Y++MFDQ+ Sbjct: 8 PENYQVQLDEKTEALSAMFSEFDVPELEVFSSPAENYRMRAEFRIWHEGDDMYYVMFDQK 67 Query: 67 TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL 126 TKE+ R+DYF+P + LIN LM + I+ LR K+FQ+D+L++ S + +V+++YHR Sbjct: 68 TKEKYRVDYFLPATRLINDLMPLLAEAIKGSKTLRYKMFQVDFLSTLSGEILVSMLYHRQ 127 Query: 127 LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS 186 LDDAW+E A L+ L+ + + + LIGRA K KI LD+++V E+L V L Y+Q+ENS Sbjct: 128 LDDAWKEEAAVLKQQLNEKGFNLNLIGRARKMKIVLDQEFVIEKLKVNDDILTYKQVENS 187 Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246 FTQPN + MLEW + T+ QGDLLELYCGNGNFSL LA++FDRVLA E+AKPSVE+ Sbjct: 188 FTQPNGVVAQKMLEWAVDCTQDSQGDLLELYCGNGNFSLALAKNFDRVLATELAKPSVES 247 Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGL 304 A+YNIAAN+++NV+IVRMS+++FT AM +REF RLKD +D+ SY TIFVDPPRSG+ Sbjct: 248 AQYNIAANNIDNVQIVRMSAEDFTDAMEGKREFRRLKDQNVDLKSYNCNTIFVDPPRSGM 307 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D+ T MVQ Y I+YISCNPD+L +L+ILS TH I R ALFDQFPYT HME G+ L R Sbjct: 308 DEGTCKMVQGYERIMYISCNPDTLKENLAILSKTHNITRFALFDQFPYTHHMEAGIFLER 367 Query: 365 K 365 K Sbjct: 368 K 368 >gi|332991663|gb|AEF01718.1| tRNA (uracil-5-)-methyltransferase [Alteromonas sp. SN2] Length = 364 Score = 429 bits (1103), Expect = e-118, Method: Composition-based stats. Identities = 191/362 (52%), Positives = 258/362 (71%) Query: 4 TLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63 T Y+ QL EKVDRL ++ F P+L ++ S+P +YRMRAEF +WHDGDDLYHIMF Sbjct: 3 TTTAKDYQAQLDEKVDRLGTLLTPFNAPSLSVYPSKPENYRMRAEFRVWHDGDDLYHIMF 62 Query: 64 DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIY 123 DQ +KE+ R+D F P S IN+ M +++ ++ LLR KLFQIDYLT S + +++L+Y Sbjct: 63 DQGSKEKYRVDTFPPASETINSAMQQLIEYLKPNELLRKKLFQIDYLTGLSGELVISLLY 122 Query: 124 HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQI 183 H+ LDD W A LR L + + +IGRA K K + D++ ERL + GR ++ I Sbjct: 123 HKPLDDEWEVQAELLRTFLATQFTAVSIIGRARKQKRIVGNDFIIERLPINGREFEFKHI 182 Query: 184 ENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 ENSFTQPNA +N M+EW L + + GDLLE+YCG GNFS+ LA HFD V+ EIAKPS Sbjct: 183 ENSFTQPNAEVNCSMIEWSLECSAPLTGDLLEMYCGAGNFSMPLAVHFDNVIGTEIAKPS 242 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 V+AA+YNIAANH++NVKIVR+S++EFT+AM ER F+RL+ I++ Y F T+ VDPPR+G Sbjct: 243 VQAAQYNIAANHLDNVKIVRLSAEEFTEAMNGERTFSRLEGINLTEYNFTTVLVDPPRAG 302 Query: 304 LDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363 LD ++ M+Q Y +I+YISCNP++L +LS+L TH + ALFDQFP+T H+E GVLL Sbjct: 303 LDVDSLKMIQGYDNIIYISCNPETLAENLSLLCETHEVANAALFDQFPFTHHIEAGVLLT 362 Query: 364 RK 365 +K Sbjct: 363 KK 364 >gi|153826308|ref|ZP_01978975.1| tRNA (uracil-5-)-methyltransferase [Vibrio cholerae MZO-2] gi|149739976|gb|EDM54155.1| tRNA (uracil-5-)-methyltransferase [Vibrio cholerae MZO-2] Length = 369 Score = 429 bits (1103), Expect = e-118, Method: Composition-based stats. Identities = 202/362 (55%), Positives = 269/362 (74%), Gaps = 2/362 (0%) Query: 7 IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66 + Y+ QLA+K+ RL+ M + + +P L++F S +YRMRAEF IWH+GDD+Y+IMF+Q+ Sbjct: 8 PELYQAQLADKIARLKAMFVDYSMPELEVFESPVANYRMRAEFRIWHEGDDMYYIMFNQE 67 Query: 67 TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL 126 T+E+ R+D F S LIN LM +M ++ P+LR KLFQ+D+L++ S + +V+L+YHR Sbjct: 68 TREKYRVDQFPAASRLINDLMPLLMDAMKGSPILRHKLFQVDFLSTLSGEILVSLLYHRQ 127 Query: 127 LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS 186 L + W A L+ L+ + + LIGRA K K+ LDRDYV E+L V G+ +Y+Q+ENS Sbjct: 128 LSEEWITAAQALKQRLNDEGFNLNLIGRARKMKVVLDRDYVVEKLQVNGQPYVYKQVENS 187 Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246 FTQPNA + MLEW + T+ +GDLLELYCGNGNFSL LA++F+RVLA E+AKPSVEA Sbjct: 188 FTQPNAKVAEKMLEWAVDCTQESKGDLLELYCGNGNFSLALAQNFERVLATELAKPSVEA 247 Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGL 304 A++NIAAN + NV+I+RMS++EFTQAM +REFNRLKD +D+ SYR TIFVDPPRSG+ Sbjct: 248 AQFNIAANQIGNVQIIRMSAEEFTQAMEGKREFNRLKDAGVDLQSYRCNTIFVDPPRSGM 307 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D T MVQ Y ILYISCNP++L +L +L TH + R ALFDQFPYT HME GV+L R Sbjct: 308 DIDTCKMVQGYERILYISCNPETLKENLQVLGETHQVVRFALFDQFPYTHHMEAGVMLER 367 Query: 365 KP 366 K Sbjct: 368 KK 369 >gi|254509266|ref|ZP_05121360.1| tRNA (uracil-5-)-methyltransferase [Vibrio parahaemolyticus 16] gi|219547820|gb|EED24851.1| tRNA (uracil-5-)-methyltransferase [Vibrio parahaemolyticus 16] Length = 368 Score = 429 bits (1103), Expect = e-118, Method: Composition-based stats. Identities = 198/361 (54%), Positives = 267/361 (73%), Gaps = 2/361 (0%) Query: 7 IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66 +Y++QLAEKV+RL +M + P L++F S HYRMRAEF +WH+G+DLY+IMF+Q+ Sbjct: 8 PQRYQEQLAEKVERLTEMFAPYNAPELEVFESPEQHYRMRAEFRVWHEGEDLYYIMFNQE 67 Query: 67 TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL 126 T+E+ R+D F S LIN LM ++ ++ LR KLFQ+D+L++ S + +V+L+YHR Sbjct: 68 TREKYRVDQFPAASRLINDLMPLLVDAMKDNDSLRRKLFQVDFLSTLSGEILVSLLYHRQ 127 Query: 127 LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS 186 LDD W + A L+ L+ + + +IGRA K KI LDRDYV E+L V G+ IY+Q+ENS Sbjct: 128 LDDEWTKNAKALKQRLNDEGFNLNIIGRARKMKIVLDRDYVIEKLDVNGKPYIYQQVENS 187 Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246 FTQPN + MLEW + T+ QGDLLELYCGNGNFSL LA++F+RVLA E+AKPSV + Sbjct: 188 FTQPNGKVAEKMLEWAVDCTQDSQGDLLELYCGNGNFSLALAQNFERVLATELAKPSVIS 247 Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGL 304 A+YNIAAN ++NV+I+R+S++EFT+A+ +REF RLKD +D+ SY TIFVDPPR+G+ Sbjct: 248 AQYNIAANKIDNVQILRLSAEEFTEAIEGKREFRRLKDAGVDLKSYNCNTIFVDPPRAGM 307 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D T MVQ Y ILYISCNP++L +L +LS TH + R ALFDQFP+T HME GV+L R Sbjct: 308 DIDTCKMVQGYERILYISCNPETLKENLDVLSETHNVTRFALFDQFPFTHHMEAGVMLER 367 Query: 365 K 365 K Sbjct: 368 K 368 >gi|307246918|ref|ZP_07528983.1| tRNA (uracil-5-)-methyltransferase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307255900|ref|ZP_07537701.1| tRNA (uracil-5-)-methyltransferase [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307260353|ref|ZP_07542060.1| tRNA (uracil-5-)-methyltransferase [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306852203|gb|EFM84443.1| tRNA (uracil-5-)-methyltransferase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306861168|gb|EFM93161.1| tRNA (uracil-5-)-methyltransferase [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306865604|gb|EFM97485.1| tRNA (uracil-5-)-methyltransferase [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 368 Score = 429 bits (1103), Expect = e-118, Method: Composition-based stats. Identities = 202/367 (55%), Positives = 266/367 (72%), Gaps = 5/367 (1%) Query: 4 TLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHD-----GDDL 58 L I+QY LAEK L +++ F P L++F SE H+RMRAEF +WHD ++L Sbjct: 2 NLPIEQYADLLAEKAKNLTALLVPFNPPELEVFESETSHFRMRAEFRVWHDTNEVGENEL 61 Query: 59 YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAI 118 YHIMFDQ+TK+R R++ F + LIN +M ++A I+ LL KLFQ+DYL++ S + Sbjct: 62 YHIMFDQETKQRYRVEQFPIANHLINKMMSSLLAEIKGNELLTRKLFQVDYLSTLSGEIA 121 Query: 119 VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTL 178 V+++YH+ L++ W+ A L+ L + +++Q+IGRA K KI LDRDYV+E L V GR L Sbjct: 122 VSMLYHKKLNEEWQAEAAALKARLEHQGFKVQIIGRATKQKIALDRDYVEEVLPVDGRNL 181 Query: 179 IYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVE 238 IYRQ+ENSFTQPNA +N+ MLEW + T+ GDLLELYCGNGNFS+ LA +F +VLA E Sbjct: 182 IYRQVENSFTQPNAKMNIKMLEWARSCTRHSSGDLLELYCGNGNFSIALAENFRQVLATE 241 Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298 I+K SV++A+YNI N ++N++I+RMS++EFTQAM REFNRLK ID+ +Y TIFVD Sbjct: 242 ISKSSVQSAQYNIEQNGIDNLQIIRMSAEEFTQAMNGVREFNRLKGIDLKAYDCNTIFVD 301 Query: 299 PPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMEC 358 PPR+GLD T+ MVQAY ILYISCNP +L +L LS TH IER ALFDQFPYT H+E Sbjct: 302 PPRAGLDQDTLNMVQAYERILYISCNPHTLAENLQQLSQTHRIERAALFDQFPYTHHVES 361 Query: 359 GVLLVRK 365 GV L+RK Sbjct: 362 GVWLIRK 368 >gi|84394318|ref|ZP_00993041.1| tRNA (uracil-5-)-methyltransferase [Vibrio splendidus 12B01] gi|84375048|gb|EAP91972.1| tRNA (uracil-5-)-methyltransferase [Vibrio splendidus 12B01] Length = 369 Score = 429 bits (1102), Expect = e-118, Method: Composition-based stats. Identities = 199/361 (55%), Positives = 264/361 (73%), Gaps = 2/361 (0%) Query: 7 IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66 +Y++QLAEK +RL +M + VP L+++ S HYRMRAEF +WH+GDD+Y++MF+Q+ Sbjct: 8 PQRYQEQLAEKTERLTEMFSQYDVPELEVYESPEQHYRMRAEFRVWHEGDDMYYVMFNQE 67 Query: 67 TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL 126 TKE+ R+D F S LIN LM + ++ LR KLFQ+D+L++ S + +V+L+YHR Sbjct: 68 TKEKYRVDQFPAASRLINDLMPLLTDAMKDNHSLRHKLFQVDFLSTLSGEILVSLLYHRQ 127 Query: 127 LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS 186 L + W + A L+ L+ + + LIGRA K KI LDRDYV E+L V G + IY+Q+ENS Sbjct: 128 LGEQWIQDAKALKQQLNDEGFNLNLIGRARKMKIVLDRDYVIEKLDVNGDSYIYQQVENS 187 Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246 FTQPN + MLEW + T+ +GDLLELYCGNGNFSL LA++F+RVLA E+AKPSVE+ Sbjct: 188 FTQPNGKVAEKMLEWAVDCTQDSKGDLLELYCGNGNFSLALAQNFERVLATELAKPSVES 247 Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK--DIDIHSYRFKTIFVDPPRSGL 304 A+YNIAAN ++NV+I+RMS+++FT AM +REF RL+ +ID+ SY TIFVDPPRSG+ Sbjct: 248 AQYNIAANKIDNVQIIRMSAEDFTVAMEGKREFRRLQQANIDLKSYNCNTIFVDPPRSGM 307 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D T MVQ Y I+YISCNP++L +L ILS TH I R ALFDQFPYT HME GV L R Sbjct: 308 DVDTCKMVQGYERIMYISCNPETLKENLDILSETHDITRFALFDQFPYTHHMEAGVFLER 367 Query: 365 K 365 K Sbjct: 368 K 368 >gi|229525047|ref|ZP_04414452.1| tRNA (uracil-5-)-methyltransferase [Vibrio cholerae bv. albensis VL426] gi|229338628|gb|EEO03645.1| tRNA (uracil-5-)-methyltransferase [Vibrio cholerae bv. albensis VL426] Length = 369 Score = 429 bits (1102), Expect = e-118, Method: Composition-based stats. Identities = 203/362 (56%), Positives = 270/362 (74%), Gaps = 2/362 (0%) Query: 7 IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66 + Y+ QLA+K+ RL+ M + + +P L++F S +YRMRAEF IWH+GDD+Y+IMF+Q+ Sbjct: 8 PELYQAQLADKIARLKAMFVDYSMPELEVFESPVANYRMRAEFRIWHEGDDMYYIMFNQE 67 Query: 67 TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL 126 T+E+ R+D F S LIN LM +M ++ P+LR KLFQ+D+L++ S + +V+L+YHR Sbjct: 68 TREKYRVDQFPAASRLINDLMPLLMDAMKGSPILRHKLFQVDFLSTLSGEILVSLLYHRQ 127 Query: 127 LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS 186 L + W A L+ L+ + + LIGRA K K+ LDRDYV E+L V G+ +Y+Q+ENS Sbjct: 128 LSEEWITAAQALKQRLNDEGFNLNLIGRARKMKVVLDRDYVVEKLQVNGQPYVYKQVENS 187 Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246 FTQPNAG+ MLEW + T+ +GDLLELYCGNGNFSL LA++F+RVLA E+AKPSVEA Sbjct: 188 FTQPNAGVAEKMLEWAVDCTQESKGDLLELYCGNGNFSLALAQNFERVLATELAKPSVEA 247 Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGL 304 A++NIAAN + NV+I+RMS++EFTQAM +REFNRLKD +D+ SYR TIFVDPPRSG+ Sbjct: 248 AQFNIAANQIGNVQIIRMSAEEFTQAMEGKREFNRLKDAGVDLQSYRCNTIFVDPPRSGM 307 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D T MVQ Y ILYISCNP++L +L +L TH + R ALFDQFPYT HME GV+L R Sbjct: 308 DIDTCKMVQGYERILYISCNPETLQENLQVLGETHQVVRFALFDQFPYTHHMEAGVMLER 367 Query: 365 KP 366 K Sbjct: 368 KK 369 >gi|260771656|ref|ZP_05880576.1| tRNA (Uracil54-C5-)-methyltransferase [Vibrio metschnikovii CIP 69.14] gi|260613433|gb|EEX38632.1| tRNA (Uracil54-C5-)-methyltransferase [Vibrio metschnikovii CIP 69.14] Length = 369 Score = 429 bits (1102), Expect = e-118, Method: Composition-based stats. Identities = 204/361 (56%), Positives = 268/361 (74%), Gaps = 2/361 (0%) Query: 7 IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66 + Y QLAEK+ RL +M + VP L++F S +YRMRAEF +WH+GD++Y++MF+ Sbjct: 8 PEHYSAQLAEKITRLTEMFQPYHVPKLEVFESPKQYYRMRAEFRVWHEGDEMYYVMFNPT 67 Query: 67 TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL 126 T+E+ R+D F S LIN LM ++ ++ LR KLFQ+D+L++ S + +V+LIYHR Sbjct: 68 TREKYRVDQFPAASRLINDLMPLLIEAMQGNKTLRHKLFQVDFLSTLSGELLVSLIYHRQ 127 Query: 127 LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS 186 LD+AW A +L+ L+ + + +IGRA K KI LDRDYV E+L V + +Y+Q+ENS Sbjct: 128 LDEAWTSEAKQLKQRLNDEGFNLNVIGRARKMKIVLDRDYVVEKLHVNDKAYLYQQVENS 187 Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246 FTQPN + MLEW + T+ QGDLLELYCGNGNFSL LA++FDRVLA E+AKPSVE+ Sbjct: 188 FTQPNGKVAEKMLEWAVDCTQESQGDLLELYCGNGNFSLALAQNFDRVLATELAKPSVES 247 Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGL 304 A+YNIAANH++NV+I+RMS+++FTQAM +REFNRLK+ ID+ SYR TIFVDPPR+G+ Sbjct: 248 AQYNIAANHIDNVQIIRMSAEDFTQAMEGKREFNRLKEAGIDLKSYRCNTIFVDPPRAGM 307 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D T MVQ Y ILYISCNP++L +L ILSTTH I R ALFDQFPYT HME GV+L R Sbjct: 308 DVDTCKMVQGYERILYISCNPETLKENLDILSTTHNITRFALFDQFPYTHHMEAGVMLER 367 Query: 365 K 365 K Sbjct: 368 K 368 >gi|260774785|ref|ZP_05883687.1| tRNA (Uracil54-C5-)-methyltransferase [Vibrio coralliilyticus ATCC BAA-450] gi|260609210|gb|EEX35365.1| tRNA (Uracil54-C5-)-methyltransferase [Vibrio coralliilyticus ATCC BAA-450] Length = 369 Score = 428 bits (1101), Expect = e-118, Method: Composition-based stats. Identities = 203/359 (56%), Positives = 267/359 (74%), Gaps = 2/359 (0%) Query: 7 IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66 +Y++QLAEKV+RL +M + VP L++F S HYRMRAEF +WH+GDDLY+IMF+Q+ Sbjct: 8 PQRYQEQLAEKVERLNEMFAPYHVPELEVFESPEQHYRMRAEFRVWHEGDDLYYIMFNQE 67 Query: 67 TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL 126 T+E+ R+D F S LIN LM ++ ++ LR KLFQ+D+L++ S + +V+L+YHR Sbjct: 68 TREKYRVDQFPAASRLINDLMPLLIDAMKDNDSLRRKLFQVDFLSTLSGEILVSLLYHRQ 127 Query: 127 LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS 186 LDD W + A L+ L+ + + LIGRA K KI LDRDYV E+L V G+ +Y+Q+ENS Sbjct: 128 LDDEWTKNAKALKQRLNDEGFNLNLIGRARKMKIVLDRDYVIEKLDVNGQPYVYQQVENS 187 Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246 FTQPN + MLEW + T QGDLLELYCGNGNFSL LA++F+RVLA E+AKPSVE+ Sbjct: 188 FTQPNGKVAEKMLEWAIDCTNESQGDLLELYCGNGNFSLALAQNFNRVLATELAKPSVES 247 Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGL 304 A+YNIAAN+++NV+I+R+S++EFTQA+ +REF RLKD +D+ SY TIFVDPPRSG+ Sbjct: 248 AQYNIAANNIDNVQILRLSAEEFTQAIEGKREFRRLKDAGVDLKSYNCNTIFVDPPRSGM 307 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363 D T MVQ Y ILYISCNP++L +L +LS TH I R ALFDQFPYT HME G+LL Sbjct: 308 DIDTCKMVQGYERILYISCNPETLKDNLDVLSETHNITRFALFDQFPYTHHMEAGILLE 366 >gi|86148652|ref|ZP_01066933.1| tRNA (uracil-5-)-methyltransferase [Vibrio sp. MED222] gi|218710898|ref|YP_002418519.1| tRNA (uracil-5-)-methyltransferase [Vibrio splendidus LGP32] gi|254789082|sp|B7VM88|TRMA_VIBSL RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|85833571|gb|EAQ51748.1| tRNA (uracil-5-)-methyltransferase [Vibrio sp. MED222] gi|218323917|emb|CAV20278.1| tRNA (uracil-5-)-methyltransferase [Vibrio splendidus LGP32] Length = 369 Score = 428 bits (1101), Expect = e-118, Method: Composition-based stats. Identities = 199/361 (55%), Positives = 263/361 (72%), Gaps = 2/361 (0%) Query: 7 IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66 +Y++QLAEK +RL +M + VP L+++ S HYRMRAEF +WH+GDD+Y++MF+Q+ Sbjct: 8 PQRYQEQLAEKTERLTEMFSEYNVPELEVYESPEQHYRMRAEFRVWHEGDDMYYVMFNQE 67 Query: 67 TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL 126 TKE+ R+D F S LIN LM + ++ LR KLFQ+D+L++ S + +V+L+YHR Sbjct: 68 TKEKYRVDQFPAASRLINDLMPLLTDAMKDNHSLRHKLFQVDFLSTLSGEILVSLLYHRQ 127 Query: 127 LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS 186 L + W + A L+ L+ + + LIGRA K KI LDRDYV E+L V G + IY+Q+ENS Sbjct: 128 LGEQWIQDAKALKQQLNDEGFNLNLIGRARKMKIVLDRDYVIEKLDVNGDSYIYQQVENS 187 Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246 FTQPN + MLEW + T+ +GDLLELYCGNGNFSL LA++F+RVLA E+AKPSVE+ Sbjct: 188 FTQPNGKVAEKMLEWAVDCTQDSKGDLLELYCGNGNFSLALAQNFERVLATELAKPSVES 247 Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK--DIDIHSYRFKTIFVDPPRSGL 304 A+YNIAAN + NV+I+RMS+++FT AM +REF RL+ +ID+ SY TIFVDPPRSG+ Sbjct: 248 AQYNIAANKIENVQIIRMSAEDFTVAMEGKREFRRLQQANIDLKSYNCNTIFVDPPRSGM 307 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D T MVQ Y I+YISCNP++L +L ILS TH I R ALFDQFPYT HME GV L R Sbjct: 308 DVDTCKMVQGYERIMYISCNPETLKENLDILSETHDITRFALFDQFPYTHHMEAGVFLER 367 Query: 365 K 365 K Sbjct: 368 K 368 >gi|307262483|ref|ZP_07544128.1| tRNA (uracil-5-)-methyltransferase [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306867860|gb|EFM99691.1| tRNA (uracil-5-)-methyltransferase [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 368 Score = 428 bits (1101), Expect = e-118, Method: Composition-based stats. Identities = 201/367 (54%), Positives = 265/367 (72%), Gaps = 5/367 (1%) Query: 4 TLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHD-----GDDL 58 L I+QY LAEK L ++ F P L++F SE H+RMRAEF +WHD ++L Sbjct: 2 NLPIEQYADLLAEKAKNLTALLAPFNPPELEVFESETSHFRMRAEFRVWHDTNEVGENEL 61 Query: 59 YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAI 118 YHIMFDQ+TK+R R++ F + LIN +M ++A I+ LL KLFQ+DYL++ S + Sbjct: 62 YHIMFDQETKQRYRVEQFPIANHLINKMMSSLLAEIKGNELLTRKLFQVDYLSTLSGEIA 121 Query: 119 VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTL 178 V+++YH+ L++ W+ A L+ L + +++Q+IGRA K KI LDRDYV+E L V GR L Sbjct: 122 VSMLYHKKLNEEWQAEAAALKARLEHQGFKVQIIGRATKQKIALDRDYVEEVLLVDGRNL 181 Query: 179 IYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVE 238 IYRQ+ENSFTQPNA +N+ MLEW + TK GDLLELYCGNGNFS+ LA +F +VLA E Sbjct: 182 IYRQVENSFTQPNAKMNIKMLEWARSCTKNSTGDLLELYCGNGNFSIALAENFRQVLATE 241 Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298 I+K SV++A+YNI N ++N++I+RMS++EFTQAM REFNRLK ID+ +Y TIFVD Sbjct: 242 ISKSSVQSAQYNIEQNGIDNLQIIRMSAEEFTQAMNGVREFNRLKGIDLKAYDCNTIFVD 301 Query: 299 PPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMEC 358 PPR+GLD T+ MVQAY ILYISCNP +L +L+ L+ TH IER ALFDQFPYT H+E Sbjct: 302 PPRAGLDQDTLNMVQAYERILYISCNPHTLAENLAQLTRTHRIERAALFDQFPYTHHVES 361 Query: 359 GVLLVRK 365 V L+RK Sbjct: 362 SVWLIRK 368 >gi|307258085|ref|ZP_07539837.1| tRNA (uracil-5-)-methyltransferase [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306863448|gb|EFM95379.1| tRNA (uracil-5-)-methyltransferase [Actinobacillus pleuropneumoniae serovar 10 str. D13039] Length = 368 Score = 428 bits (1100), Expect = e-118, Method: Composition-based stats. Identities = 201/367 (54%), Positives = 266/367 (72%), Gaps = 5/367 (1%) Query: 4 TLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHD-----GDDL 58 L I+QY LAEK L +++ F P L++F SE H+RMRAEF +WHD ++L Sbjct: 2 NLPIEQYADLLAEKAKNLTALLVPFNPPELEVFESETSHFRMRAEFRVWHDTNEVGENEL 61 Query: 59 YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAI 118 YHIMFDQ+TK+R R+D F + LIN +M ++A I+ LL KLFQ+DYL++ S + Sbjct: 62 YHIMFDQETKQRYRVDQFPIANHLINKMMSSLLAEIKGNELLTRKLFQVDYLSTLSGEIA 121 Query: 119 VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTL 178 V+++YH+ L++ W+ A L+ L + +++Q+IGRA K KI LDRDYV+E L V GR L Sbjct: 122 VSMLYHKKLNEEWQAEAAALKARLEHQGFKVQIIGRATKQKIALDRDYVEEVLPVDGRNL 181 Query: 179 IYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVE 238 IYRQ+ENSFTQPNA +N+ MLEW + T+ GDLLELYCGNGNFS+ LA +F +VLA E Sbjct: 182 IYRQVENSFTQPNAKMNIKMLEWARSCTRHSSGDLLELYCGNGNFSIALAENFRKVLATE 241 Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298 I+K SV++A+YNI N ++N++I+RMS++EFTQAM REFNRLK ID+ +Y TIFVD Sbjct: 242 ISKSSVQSAQYNIEQNGIDNLQIIRMSAEEFTQAMNGVREFNRLKGIDLKAYDCNTIFVD 301 Query: 299 PPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMEC 358 PPR+GLD T+ MVQAY ILYISCNP +L +L+ L+ TH IER ALFDQFPYT H+E Sbjct: 302 PPRAGLDQDTLNMVQAYERILYISCNPHTLAENLAQLTRTHRIERAALFDQFPYTHHVES 361 Query: 359 GVLLVRK 365 V L+RK Sbjct: 362 SVWLIRK 368 >gi|113460452|ref|YP_718514.1| tRNA (uracil-5-)-methyltransferase [Haemophilus somnus 129PT] gi|112822495|gb|ABI24584.1| tRNA (uracil-5-)-methyltransferase [Haemophilus somnus 129PT] Length = 399 Score = 428 bits (1100), Expect = e-118, Method: Composition-based stats. Identities = 204/363 (56%), Positives = 269/363 (74%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L I+QY LAEK +L +++ F P L +F SE H+RMRAEF IWH+ DD YHIMFD Sbjct: 37 LPIEQYSALLAEKQQKLTELLAPFNSPPLDVFASETSHFRMRAEFRIWHEQDDFYHIMFD 96 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 Q+TK+R RID F S LIN +M+ ++ ++ +L +LFQIDYL++ S++ IV+L+YH Sbjct: 97 QKTKQRFRIDQFPIASQLINQMMLALLPLLKQHNILTHRLFQIDYLSTLSNKIIVSLLYH 156 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + L++ W + A +L+ L + + +Q+IGRANK KICL +D+VDE L V + IYRQ+E Sbjct: 157 KTLNEEWLQAATQLKQQLIKQGFDVQIIGRANKQKICLQQDFVDEILPVKNQQYIYRQVE 216 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N MLEW + TK QGDLLELYCGNGNFS+ LA++F +VLA EIAKPSV Sbjct: 217 NSFTQPNATVNCKMLEWAIDCTKNSQGDLLELYCGNGNFSIALAQNFRKVLATEIAKPSV 276 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA++NIAAN ++N+ I+RMS+++FTQAM R FNRLK I++ Y+ TIFVDPPR+GL Sbjct: 277 SAAQFNIAANKIDNLHIIRMSAEDFTQAMNGVRAFNRLKGINLQDYQCNTIFVDPPRAGL 336 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D ATV +VQ Y ILYISCNP +LC +L L+ TH IE+ ALFDQFPYT HME GV L++ Sbjct: 337 DMATVKLVQNYERILYISCNPYTLCENLQELTKTHRIEKAALFDQFPYTEHMESGVWLIK 396 Query: 365 KPS 367 K + Sbjct: 397 KSN 399 >gi|239994745|ref|ZP_04715269.1| tRNA (uracil-5-)-methyltransferase [Alteromonas macleodii ATCC 27126] Length = 365 Score = 427 bits (1099), Expect = e-117, Method: Composition-based stats. Identities = 192/357 (53%), Positives = 264/357 (73%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTK 68 +Y+ QL EKV+RL ++ F P+L +F S+P HYRMRAEF +WH+GDDL+HIMF+Q+TK Sbjct: 8 RYQAQLDEKVERLTALLSPFNAPDLTVFPSQPTHYRMRAEFRVWHEGDDLFHIMFNQETK 67 Query: 69 ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLD 128 E+ R+D F P IN M ++ +R LR KLFQIDYL++ S + +++L+YHR LD Sbjct: 68 EKYRVDSFPPACKAINDAMALLLKEVRPNEALRKKLFQIDYLSALSGELVISLLYHRQLD 127 Query: 129 DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFT 188 + W+E A L+ L A ++ +IGRA K K+ +D D+V ERL V G+ I++ IENSFT Sbjct: 128 EKWQEAAKELKAKLEAHFPKVNIIGRARKQKLIIDNDFVIERLPVNGKEFIFKHIENSFT 187 Query: 189 QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248 QPNA +N M+EW L K + GDLLE+YCG GNFSL LA HFD V+ EIAKPSV+AA+ Sbjct: 188 QPNAEVNCSMIEWALDCVKPLSGDLLEMYCGAGNFSLPLALHFDNVVGTEIAKPSVQAAQ 247 Query: 249 YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDAT 308 +NI N +NNVKIVR++++EFTQAM+ ER F+RL+ ID+ +Y F T+ VDPPR+GLD+ + Sbjct: 248 FNIEQNQLNNVKIVRLAAEEFTQAMKGERTFSRLEGIDLSAYNFTTVLVDPPRAGLDEDS 307 Query: 309 VGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 + M+Q Y +I+YISCNP++L ++L +LS TH + + ALFDQFP+T H+E GVLL RK Sbjct: 308 LRMIQDYDNIVYISCNPETLAQNLELLSETHDVAQSALFDQFPFTHHIEAGVLLTRK 364 >gi|229845900|ref|ZP_04466012.1| tRNA (uracil-5-)-methyltransferase [Haemophilus influenzae 7P49H1] gi|229810904|gb|EEP46621.1| tRNA (uracil-5-)-methyltransferase [Haemophilus influenzae 7P49H1] Length = 363 Score = 427 bits (1098), Expect = e-117, Method: Composition-based stats. Identities = 204/361 (56%), Positives = 265/361 (73%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L I QY + L +K+++L ++ F P++Q+F S HYRMRAEF IWH+ DD YHIMFD Sbjct: 3 LPISQYNELLQKKLEKLTALLRPFNAPDIQVFDSPTSHYRMRAEFRIWHEQDDFYHIMFD 62 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 Q T +R R+D F S IN +M ++ ++ + +L KLFQIDYL++ S++ IV+L+YH Sbjct: 63 QATLQRYRVDEFPIASTQINRMMQTLLPLLKQQEVLHKKLFQIDYLSTLSNKIIVSLLYH 122 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + L + W A L+D L + + +Q+IGRA+K KIC D+DYVDE L+V GR +YRQ+E Sbjct: 123 KTLTEEWESAAKNLKDLLEKQGFDVQIIGRASKQKICFDQDYVDEILSVNGRNYVYRQVE 182 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N MLEW + T+ +GDLLELYCGNGNFS+ LA++F +VLA EIAKPSV Sbjct: 183 NSFTQPNATVNCKMLEWAIDCTQNSEGDLLELYCGNGNFSIALAQNFRKVLATEIAKPSV 242 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA++NIA N V+N++I+RMS++EFTQAM R FNRLK ID+ SY TIFVDPPR+GL Sbjct: 243 AAAQFNIAENKVDNLQIIRMSAEEFTQAMNGVRAFNRLKGIDLKSYECNTIFVDPPRAGL 302 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D TV +VQ Y ILYISCNP +LC +L LS TH IE+ ALFDQFPYT HME GV L+R Sbjct: 303 DPDTVKLVQNYDRILYISCNPHTLCDNLVELSKTHRIEKAALFDQFPYTDHMESGVWLIR 362 Query: 365 K 365 K Sbjct: 363 K 363 >gi|91228523|ref|ZP_01262444.1| tRNA (uracil-5-)-methyltransferase [Vibrio alginolyticus 12G01] gi|91187899|gb|EAS74210.1| tRNA (uracil-5-)-methyltransferase [Vibrio alginolyticus 12G01] Length = 369 Score = 427 bits (1098), Expect = e-117, Method: Composition-based stats. Identities = 197/360 (54%), Positives = 265/360 (73%), Gaps = 2/360 (0%) Query: 7 IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66 +Y++QLAEKV+RL M + +P L++F S HYRMRAEF +WH+G+DLY+IMF+Q+ Sbjct: 8 PQRYQEQLAEKVERLTDMFAPYNMPELEVFESPEQHYRMRAEFRVWHEGEDLYYIMFNQE 67 Query: 67 TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL 126 T+E+ R+D F S LIN LM ++ ++ LR KLFQ+D+L++ S + +V+L+YHR Sbjct: 68 TREKYRVDQFPAASRLINDLMPLLVEAMKDNDSLRRKLFQVDFLSTLSGEILVSLLYHRQ 127 Query: 127 LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS 186 LD+ W E A L+ L+ + + +IGRA K KI LDRDYV E+L V G++ IY+Q+ENS Sbjct: 128 LDEEWIENAKALKQRLNDEGFNLNIIGRARKMKIVLDRDYVIEKLDVNGQSYIYQQVENS 187 Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246 FTQPN + MLEW + T+ GDLLELYCGNGNFSL LA++FDRVLA E+AKPSV + Sbjct: 188 FTQPNGKVAEKMLEWAVDCTQESTGDLLELYCGNGNFSLALAQNFDRVLATELAKPSVVS 247 Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGL 304 A+YNIAAN ++NV+I+R+S++EFTQA+ +REF RL+D +D+ SY TIFVDPPR+G+ Sbjct: 248 AQYNIAANKIDNVQILRLSAEEFTQAIEGKREFRRLQDAGVDLESYNCNTIFVDPPRAGM 307 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D T MVQ Y I+YISCNP++L +L IL TH + R ALFDQFPYT HME GV+L R Sbjct: 308 DVDTCKMVQGYERIMYISCNPETLKENLDILCETHNVTRFALFDQFPYTHHMEAGVMLER 367 >gi|59713043|ref|YP_205819.1| tRNA (uracil-5-)-methyltransferase [Vibrio fischeri ES114] gi|197336423|ref|YP_002157222.1| tRNA (uracil-5-)-methyltransferase [Vibrio fischeri MJ11] gi|75431447|sp|Q5E215|TRMA_VIBF1 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|226705995|sp|B5FCA6|TRMA_VIBFM RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|59481144|gb|AAW86931.1| tRNA (uracil-5-)-methyltransferase [Vibrio fischeri ES114] gi|197317913|gb|ACH67360.1| tRNA (uracil-5-)-methyltransferase [Vibrio fischeri MJ11] Length = 368 Score = 427 bits (1098), Expect = e-117, Method: Composition-based stats. Identities = 199/361 (55%), Positives = 266/361 (73%), Gaps = 2/361 (0%) Query: 7 IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66 + Y+ QL EK + L M F VP L++F S +YRMRAEF +WH+GD++Y++MF+Q+ Sbjct: 8 PENYQVQLDEKAEALSAMFSEFNVPELEVFSSPAENYRMRAEFRVWHEGDEMYYVMFNQE 67 Query: 67 TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL 126 TKE+ R+DYF+P S LIN LM + ++ LR K+FQ+D+L++ S + +V+++YHR Sbjct: 68 TKEKYRVDYFLPASRLINDLMPLLTEAVKESKTLRYKMFQVDFLSTLSGEILVSMLYHRQ 127 Query: 127 LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS 186 LDDAW+E A L+ L+ + + +IGRA K KI LD+++V E+L V L Y+Q+ENS Sbjct: 128 LDDAWKEEAKALKQRLNDEGFNLNIIGRARKMKIVLDQEFVIEKLKVNDDILTYKQVENS 187 Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246 FTQPN + MLEW + T+ QGDLLELYCGNGNFSL LA++FDRVLA E+AKPSV++ Sbjct: 188 FTQPNGIVAQKMLEWAVDCTQNSQGDLLELYCGNGNFSLALAKNFDRVLATELAKPSVDS 247 Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGL 304 A+YNIAAN+++NV+I+RMS+++FT AM +REF RLKD ID+ SY TIFVDPPRSG+ Sbjct: 248 AQYNIAANNIDNVQIIRMSAEDFTDAMEGKREFRRLKDQNIDLKSYNCNTIFVDPPRSGM 307 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D+ T MVQ Y I+YISCNP++L +L ILS TH I R ALFDQFPYT HME GV L R Sbjct: 308 DEGTCKMVQGYERIMYISCNPETLKENLEILSQTHNITRFALFDQFPYTHHMEAGVFLER 367 Query: 365 K 365 K Sbjct: 368 K 368 >gi|262404889|ref|ZP_06081443.1| tRNA (uracil-5-)-methyltransferase [Vibrio sp. RC586] gi|262348973|gb|EEY98112.1| tRNA (uracil-5-)-methyltransferase [Vibrio sp. RC586] Length = 369 Score = 427 bits (1098), Expect = e-117, Method: Composition-based stats. Identities = 202/362 (55%), Positives = 270/362 (74%), Gaps = 2/362 (0%) Query: 7 IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66 + Y+ QLA+K+ RL+ M + + +P L++F S +YRMRAEF IWH+GDD+Y+IMF+Q+ Sbjct: 8 PELYQAQLADKIARLKAMFVDYSMPELEVFESPVANYRMRAEFRIWHEGDDMYYIMFNQE 67 Query: 67 TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL 126 T+E+ R+D F S LIN LM +M ++ P+LR KLFQ+D+L++ S + +V+L+YHR Sbjct: 68 TREKYRVDQFPAASRLINDLMPLLMDAMKGSPILRHKLFQVDFLSTLSGEILVSLLYHRQ 127 Query: 127 LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS 186 L + W A L+ L+ + + LIGRA K K+ LDRDYV E+L V G+ +Y+Q+ENS Sbjct: 128 LSEEWITAAQALKQRLNDEGFNLNLIGRARKMKMVLDRDYVVEKLQVNGQPYVYKQVENS 187 Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246 FTQPNA + MLEW + T+ +GDLLELYCGNGNFSL LA++F+RVLA E+AKPSVEA Sbjct: 188 FTQPNAKVAEKMLEWAVDCTQESKGDLLELYCGNGNFSLALAQNFERVLATELAKPSVEA 247 Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGL 304 A++NIAAN ++NV+I+RMS++EFTQAM +REFNRLKD +D+ SYR TIFVDPPRSG+ Sbjct: 248 AQFNIAANQIDNVQIIRMSAEEFTQAMEGKREFNRLKDAGVDLQSYRCNTIFVDPPRSGM 307 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D T MVQ Y ILYISCNP++L +L +L TH + R ALFDQFPYT HME GV+L R Sbjct: 308 DINTCKMVQGYERILYISCNPETLQENLQVLGETHQVVRFALFDQFPYTHHMEAGVMLER 367 Query: 365 KP 366 K Sbjct: 368 KK 369 >gi|229527105|ref|ZP_04416499.1| tRNA (uracil-5-)-methyltransferase [Vibrio cholerae 12129(1)] gi|229335336|gb|EEO00819.1| tRNA (uracil-5-)-methyltransferase [Vibrio cholerae 12129(1)] Length = 369 Score = 427 bits (1098), Expect = e-117, Method: Composition-based stats. Identities = 202/362 (55%), Positives = 268/362 (74%), Gaps = 2/362 (0%) Query: 7 IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66 + Y+ QLA+K+ RL+ M + + +P L++F S +YRMRAEF IWH+GDD+Y+IMF+Q+ Sbjct: 8 PELYQAQLADKIARLKAMFVDYSMPKLEVFESPVANYRMRAEFRIWHEGDDMYYIMFNQE 67 Query: 67 TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL 126 T+E+ R+D F S LIN LM +M ++ P+LR KLFQ+D+L++ S + +V+L+YHR Sbjct: 68 TREKYRVDQFPAASRLINDLMPLLMDAMKGSPILRHKLFQVDFLSTLSGEILVSLLYHRQ 127 Query: 127 LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS 186 L + W A L+ L+ + + LIGRA K K+ LDRDYV E+L V G+ +Y+Q+ENS Sbjct: 128 LSEEWITAAQALKQRLNDEGFNLNLIGRARKMKVVLDRDYVVEKLQVNGQPYVYKQVENS 187 Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246 FTQPNA + MLEW + T +GDLLELYCGNGNFSL LA++F+RVLA E+AKPSVEA Sbjct: 188 FTQPNAKVAEKMLEWAVDCTHESKGDLLELYCGNGNFSLALAQNFERVLATELAKPSVEA 247 Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGL 304 A++NIAAN + NV+I+RMS++EFTQAM +REFNRLKD +D+ SYR TIFVDPPRSG+ Sbjct: 248 AQFNIAANQIGNVQIIRMSAEEFTQAMEGKREFNRLKDAGVDLQSYRCNTIFVDPPRSGM 307 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D T MVQ Y ILYISCNP++L +L +L TH + R ALFDQFPYT HME GV+L R Sbjct: 308 DIDTCKMVQGYERILYISCNPETLQENLQVLGETHQVVRFALFDQFPYTHHMEAGVMLER 367 Query: 365 KP 366 K Sbjct: 368 KK 369 >gi|229508890|ref|ZP_04398380.1| tRNA (uracil-5-)-methyltransferase [Vibrio cholerae B33] gi|229606702|ref|YP_002877350.1| tRNA (uracil-5-)-methyltransferase [Vibrio cholerae MJ-1236] gi|255743897|ref|ZP_05417852.1| tRNA (uracil-5-)-methyltransferase [Vibrio cholera CIRS 101] gi|229354007|gb|EEO18940.1| tRNA (uracil-5-)-methyltransferase [Vibrio cholerae B33] gi|229369357|gb|ACQ59780.1| tRNA (uracil-5-)-methyltransferase [Vibrio cholerae MJ-1236] gi|255738380|gb|EET93770.1| tRNA (uracil-5-)-methyltransferase [Vibrio cholera CIRS 101] Length = 369 Score = 427 bits (1098), Expect = e-117, Method: Composition-based stats. Identities = 202/362 (55%), Positives = 268/362 (74%), Gaps = 2/362 (0%) Query: 7 IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66 + Y+ QLA+K+ RL+ M + + +P L++F S +YRMRAEF IWH+GDD+Y+IMF+Q+ Sbjct: 8 PELYQAQLADKIARLKAMFVDYSMPELEVFESPVANYRMRAEFRIWHEGDDMYYIMFNQE 67 Query: 67 TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL 126 T+E+ R+D F S LIN LM +M ++ P+LR KLFQ+D+L++ S + +V+L+YHR Sbjct: 68 TREKYRVDQFPAASRLINDLMPLLMDAMKGSPILRHKLFQVDFLSTLSGEILVSLLYHRQ 127 Query: 127 LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS 186 L + W A L+ L+ + + LIGRA K K+ LDRDYV E L V G+ +Y+Q+ENS Sbjct: 128 LSEEWITVAQALKQRLNDEGFNLNLIGRARKMKVVLDRDYVVENLQVNGQPYVYKQVENS 187 Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246 FTQPNA + MLEW + T+ +GDLLELYCGNGNFSL LA++F+RVLA E+AKPSVEA Sbjct: 188 FTQPNAKVAEKMLEWAVDCTQESKGDLLELYCGNGNFSLALAQNFERVLATELAKPSVEA 247 Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGL 304 A++NIAAN + NV+I+RMS++EFTQAM +REFNRLKD +D+ SYR TIFVDPPRSG+ Sbjct: 248 AQFNIAANQIGNVQIIRMSAEEFTQAMEGKREFNRLKDAGVDLQSYRCNTIFVDPPRSGM 307 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D T MVQ Y ILYISCNP++L +L +L TH + R ALFDQFPYT HME GV+L R Sbjct: 308 DIDTCKMVQGYERILYISCNPETLQENLQVLGETHQVVRFALFDQFPYTHHMEAGVMLER 367 Query: 365 KP 366 K Sbjct: 368 KK 369 >gi|15640185|ref|NP_229812.1| tRNA (uracil-5-)-methyltransferase [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121591770|ref|ZP_01678974.1| tRNA (uracil-5-)-methyltransferase [Vibrio cholerae 2740-80] gi|147674711|ref|YP_001218267.1| tRNA (uracil-5-)-methyltransferase [Vibrio cholerae O395] gi|153820136|ref|ZP_01972803.1| tRNA (uracil-5-)-methyltransferase [Vibrio cholerae NCTC 8457] gi|227080389|ref|YP_002808940.1| tRNA (uracil-5-)-methyltransferase [Vibrio cholerae M66-2] gi|229508429|ref|ZP_04397933.1| tRNA (uracil-5-)-methyltransferase [Vibrio cholerae BX 330286] gi|254851540|ref|ZP_05240890.1| tRNA (uracil-5-)-methyltransferase [Vibrio cholerae MO10] gi|262167005|ref|ZP_06034723.1| tRNA (Uracil54-C5-)-methyltransferase [Vibrio cholerae RC27] gi|298501084|ref|ZP_07010884.1| tRNA (uracil-5-)-methyltransferase [Vibrio cholerae MAK 757] gi|20178172|sp|Q9KVJ0|TRMA_VIBCH RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|172047522|sp|A5F4M4|TRMA_VIBC3 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|254789081|sp|C3LPZ5|TRMA_VIBCM RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|9654556|gb|AAF93331.1| tRNA (uracil-5-)-methyltransferase [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121546367|gb|EAX56626.1| tRNA (uracil-5-)-methyltransferase [Vibrio cholerae 2740-80] gi|126509317|gb|EAZ71911.1| tRNA (uracil-5-)-methyltransferase [Vibrio cholerae NCTC 8457] gi|146316594|gb|ABQ21133.1| tRNA (uracil-5-)-methyltransferase [Vibrio cholerae O395] gi|227008277|gb|ACP04489.1| tRNA (uracil-5-)-methyltransferase [Vibrio cholerae M66-2] gi|227011845|gb|ACP08055.1| tRNA (uracil-5-)-methyltransferase [Vibrio cholerae O395] gi|229354702|gb|EEO19624.1| tRNA (uracil-5-)-methyltransferase [Vibrio cholerae BX 330286] gi|254847245|gb|EET25659.1| tRNA (uracil-5-)-methyltransferase [Vibrio cholerae MO10] gi|262024589|gb|EEY43272.1| tRNA (Uracil54-C5-)-methyltransferase [Vibrio cholerae RC27] gi|297540118|gb|EFH76179.1| tRNA (uracil-5-)-methyltransferase [Vibrio cholerae MAK 757] Length = 369 Score = 427 bits (1097), Expect = e-117, Method: Composition-based stats. Identities = 202/362 (55%), Positives = 268/362 (74%), Gaps = 2/362 (0%) Query: 7 IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66 + Y+ QLA+K+ RL+ M + + +P L++F S +YRMRAEF IWH+GDD+Y+IMF+Q+ Sbjct: 8 PELYQAQLADKIARLKAMFVDYSMPELEVFESPVANYRMRAEFRIWHEGDDMYYIMFNQE 67 Query: 67 TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL 126 T+E+ R+D F S LIN LM +M ++ P+LR KLFQ+D+L++ S + +V+L+YHR Sbjct: 68 TREKYRVDQFPAASRLINDLMPLLMDAMKGSPILRHKLFQVDFLSTLSGEILVSLLYHRQ 127 Query: 127 LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS 186 L + W A L+ L+ + + LIGRA K K+ LDRDYV E L V G+ +Y+Q+ENS Sbjct: 128 LSEEWITAAQALKQRLNDEGFNLNLIGRARKMKVVLDRDYVVENLQVNGQPYVYKQVENS 187 Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246 FTQPNA + MLEW + T+ +GDLLELYCGNGNFSL LA++F+RVLA E+AKPSVEA Sbjct: 188 FTQPNAKVAEKMLEWAVDCTQESKGDLLELYCGNGNFSLALAQNFERVLATELAKPSVEA 247 Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGL 304 A++NIAAN + NV+I+RMS++EFTQAM +REFNRLKD +D+ SYR TIFVDPPRSG+ Sbjct: 248 AQFNIAANQIGNVQIIRMSAEEFTQAMEGKREFNRLKDAGVDLQSYRCNTIFVDPPRSGM 307 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D T MVQ Y ILYISCNP++L +L +L TH + R ALFDQFPYT HME GV+L R Sbjct: 308 DIDTCKMVQGYERILYISCNPETLQENLQVLGETHQVVRFALFDQFPYTHHMEAGVMLER 367 Query: 365 KP 366 K Sbjct: 368 KK 369 >gi|163803389|ref|ZP_02197264.1| tRNA (uracil-5-)-methyltransferase [Vibrio sp. AND4] gi|159172793|gb|EDP57638.1| tRNA (uracil-5-)-methyltransferase [Vibrio sp. AND4] Length = 369 Score = 427 bits (1097), Expect = e-117, Method: Composition-based stats. Identities = 196/361 (54%), Positives = 266/361 (73%), Gaps = 2/361 (0%) Query: 7 IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66 +Y++QLAEKV+RL M ++VP L++F S HYRMRAEF +WH+G+DLY+IMF+Q+ Sbjct: 8 PQRYQEQLAEKVERLNNMFAPYKVPELEVFESPEQHYRMRAEFRVWHEGEDLYYIMFNQE 67 Query: 67 TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL 126 T+E+ R+D F S LIN LM ++ ++ LR KLFQ+D+L++ S + +V+L+YHR Sbjct: 68 TREKYRVDQFPAASRLINDLMPLLVDAMKDNESLRRKLFQVDFLSTLSGEILVSLLYHRQ 127 Query: 127 LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS 186 LD+ W E A L+ L+ + + +IGRA K KI LDRD+V E+L V G++ Y+Q+ENS Sbjct: 128 LDEQWIENARALKQRLNDEGFNLNIIGRARKMKIVLDRDFVIEKLDVNGQSYTYQQVENS 187 Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246 FTQPN + MLEW + T+ GDLLELYCGNGNFSL LA++FDRVLA E+AKPSV + Sbjct: 188 FTQPNGKVAEKMLEWAVDCTQESTGDLLELYCGNGNFSLALAQNFDRVLATELAKPSVVS 247 Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGL 304 A+YNIAAN ++NV+I+R+S++EFTQA+ +REF RL++ +D+ SY TIFVDPPR+G+ Sbjct: 248 AQYNIAANEIDNVQILRLSAEEFTQAIEGKREFRRLQEAGVDLKSYNCNTIFVDPPRAGM 307 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D T MVQ Y I+YISCNP++L +L +L TH + R ALFDQFPYT HME GVLL R Sbjct: 308 DVDTCKMVQGYERIMYISCNPETLKENLDMLCETHKVTRFALFDQFPYTHHMEAGVLLER 367 Query: 365 K 365 K Sbjct: 368 K 368 >gi|261210143|ref|ZP_05924440.1| tRNA (uracil-5-)-methyltransferase [Vibrio sp. RC341] gi|260840683|gb|EEX67232.1| tRNA (uracil-5-)-methyltransferase [Vibrio sp. RC341] Length = 369 Score = 427 bits (1097), Expect = e-117, Method: Composition-based stats. Identities = 202/362 (55%), Positives = 266/362 (73%), Gaps = 2/362 (0%) Query: 7 IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66 + Y+ QLA+K+ RL+ M + + +P L++F S +YRMRAEF IWH+GDD+Y+IMF+Q+ Sbjct: 8 PELYQAQLADKIARLKAMFVDYSMPELEVFESPVANYRMRAEFRIWHEGDDMYYIMFNQE 67 Query: 67 TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL 126 T+E+ R+D F S LIN LM +M ++ P+LR KLFQ+D+L++ S + +V+L+YHR Sbjct: 68 TREKYRVDQFPAASRLINDLMPLLMDAMKGSPILRHKLFQVDFLSTLSGEILVSLLYHRQ 127 Query: 127 LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS 186 L + W A L+ L+ + + LIGRA K K+ LDRDYV E+L V G+ IY+Q+ENS Sbjct: 128 LSEEWITAAQALKQRLNDEGFNLNLIGRARKMKVVLDRDYVVEKLQVNGQPYIYKQVENS 187 Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246 FTQPNA + MLEW + T+ GDLLELYCGNGNFSL LA++F+RVLA E+AKPSVEA Sbjct: 188 FTQPNAKVAEKMLEWAVDCTQESNGDLLELYCGNGNFSLALAQNFERVLATELAKPSVEA 247 Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDI--HSYRFKTIFVDPPRSGL 304 A++NIAAN ++NV+I+RMS++EFTQAM +REFNRLKD + SYR TIFVDPPRSG+ Sbjct: 248 AQFNIAANQIDNVQIIRMSAEEFTQAMEGKREFNRLKDAGVVLQSYRCNTIFVDPPRSGM 307 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D T MVQ Y ILYISCNP +L +L +L TH + R ALFDQFPYT HME GV+L R Sbjct: 308 DIDTCKMVQGYERILYISCNPKTLQENLQVLGETHQVVRFALFDQFPYTHHMEAGVMLER 367 Query: 365 KP 366 K Sbjct: 368 KK 369 >gi|148826507|ref|YP_001291260.1| tRNA (uracil-5-)-methyltransferase [Haemophilus influenzae PittEE] gi|166988117|sp|A5UDM6|TRMA_HAEIE RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|148716667|gb|ABQ98877.1| tRNA (uracil-5-)-methyltransferase [Haemophilus influenzae PittEE] Length = 363 Score = 426 bits (1095), Expect = e-117, Method: Composition-based stats. Identities = 203/361 (56%), Positives = 264/361 (73%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L I QY + L +K+++L ++ F P++Q+F S HYRMRAEF IWH+ DD YHIMFD Sbjct: 3 LPISQYNELLQKKLEKLTALLRPFNAPDIQVFDSPTSHYRMRAEFRIWHEQDDFYHIMFD 62 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 Q T +R R+D F S IN +M ++ ++ + +L KLFQIDYL++ S++ IV+L+YH Sbjct: 63 QATLQRYRVDEFPIASTQINRMMQTLLPLLKQQEVLHKKLFQIDYLSTLSNKIIVSLLYH 122 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + L + W A L+D L + + +Q+IGRA+K KIC ++DYVDE L V GR +YRQ+E Sbjct: 123 KTLTEEWESAAKNLKDLLEKQGFNVQIIGRASKQKICFEQDYVDEVLPVNGRNYVYRQVE 182 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N MLEW + T+ +GDLLELYCGNGNFS+ LA++F +VLA EIAKPSV Sbjct: 183 NSFTQPNATVNCKMLEWAIDCTQNSEGDLLELYCGNGNFSIALAQNFRKVLATEIAKPSV 242 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA++NIA N V+N++I+RMS++EFTQAM R FNRLK ID+ SY TIFVDPPR+GL Sbjct: 243 AAAQFNIAENKVDNLQIIRMSAEEFTQAMNGVRAFNRLKGIDLKSYECNTIFVDPPRAGL 302 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D TV +VQ Y ILYISCNP +LC +L LS TH IE+ ALFDQFPYT HME GV L+R Sbjct: 303 DPDTVKLVQNYDRILYISCNPHTLCDNLVELSKTHRIEKAALFDQFPYTDHMESGVWLIR 362 Query: 365 K 365 K Sbjct: 363 K 363 >gi|307251253|ref|ZP_07533174.1| tRNA (uracil-5-)-methyltransferase [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306856769|gb|EFM88904.1| tRNA (uracil-5-)-methyltransferase [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 368 Score = 426 bits (1095), Expect = e-117, Method: Composition-based stats. Identities = 201/367 (54%), Positives = 266/367 (72%), Gaps = 5/367 (1%) Query: 4 TLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHD-----GDDL 58 L I++Y LAEK L +++ F P L++F SE H+RMRAEF +WHD ++L Sbjct: 2 NLPIERYADLLAEKAKNLTALLVPFNPPELEVFESETSHFRMRAEFRVWHDTNEVGENEL 61 Query: 59 YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAI 118 YHIMFDQ+TK+R R++ F + LIN +M ++A I+ LL KLFQ+DYL++ S + Sbjct: 62 YHIMFDQETKQRYRVEQFPIANHLINKMMSSLLAEIKGNELLTRKLFQVDYLSTLSGEIA 121 Query: 119 VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTL 178 V+++YH+ L++ W+ A L+ L + +++Q+IGRA K KI LDRDYV+E L V GR L Sbjct: 122 VSMLYHKKLNEEWQAEAAALKARLEHQGFKVQIIGRATKQKIALDRDYVEEVLPVDGRNL 181 Query: 179 IYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVE 238 IYRQ+ENSFTQPNA +N+ MLEW + T+ GDLLELYCGNGNFS+ LA +F +VLA E Sbjct: 182 IYRQVENSFTQPNAKMNIKMLEWARSCTRHSSGDLLELYCGNGNFSIALAENFRKVLATE 241 Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298 I+K SV++A+YNI N ++N++I+RMS++EFTQAM REFNRLK ID+ +Y TIFVD Sbjct: 242 ISKSSVQSAQYNIEQNGIDNLQIIRMSAEEFTQAMNGVREFNRLKGIDLKAYDCNTIFVD 301 Query: 299 PPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMEC 358 PPR+GLD T+ MVQAY ILYISCNP +L +L LS TH IER ALFDQFPYT H+E Sbjct: 302 PPRAGLDQDTLNMVQAYERILYISCNPYTLAENLRQLSLTHRIERAALFDQFPYTHHVES 361 Query: 359 GVLLVRK 365 GV L+RK Sbjct: 362 GVWLIRK 368 >gi|312884418|ref|ZP_07744123.1| tRNA (uracil-5-)-methyltransferase [Vibrio caribbenthicus ATCC BAA-2122] gi|309367940|gb|EFP95487.1| tRNA (uracil-5-)-methyltransferase [Vibrio caribbenthicus ATCC BAA-2122] Length = 369 Score = 426 bits (1095), Expect = e-117, Method: Composition-based stats. Identities = 195/359 (54%), Positives = 264/359 (73%), Gaps = 2/359 (0%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTK 68 Y++QL++KV L + +F P L++F S HYRMRAEF +WH+GDDLY++MF+QQT+ Sbjct: 10 HYQKQLSDKVSCLNDLFASFDTPELEVFESPKQHYRMRAEFRVWHEGDDLYYVMFNQQTR 69 Query: 69 ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLD 128 E+ R+D F S LIN LM E++ +++ LR KLFQ+D+L++ S + +V+L+YHR LD Sbjct: 70 EKYRVDQFPAASQLINDLMPELIDAMKVNDSLRHKLFQVDFLSTLSGEVLVSLLYHRQLD 129 Query: 129 DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFT 188 D W E A L+ L + + + +IGRA K K+ LDRDYV E+L V G+ Y+Q+ENSFT Sbjct: 130 DEWTENAKALKQQLIDKGFNLNIIGRARKMKVVLDRDYVIEKLDVNGKAYTYQQVENSFT 189 Query: 189 QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248 QPN + MLEW + T+ QGDLLELYCGNGNFSL LA++F+RVLA E+AKPSVE+A+ Sbjct: 190 QPNGKVAEKMLEWAIDCTQDSQGDLLELYCGNGNFSLALAQNFNRVLATELAKPSVESAQ 249 Query: 249 YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGLDD 306 YNI N + NV+I+R+S++EFTQA+ +REF RLKD +++ SY TIFVDPPRSG+D Sbjct: 250 YNIQVNQIENVQILRLSAEEFTQAIEGKREFRRLKDAGVELDSYNCNTIFVDPPRSGMDI 309 Query: 307 ATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 T MVQ Y I+YISCNP++L +LS+LS TH I R ALFDQFPYT HME G++L ++ Sbjct: 310 DTCKMVQGYERIIYISCNPETLKDNLSLLSQTHKITRFALFDQFPYTHHMEAGIVLEKR 368 >gi|229844717|ref|ZP_04464856.1| tRNA (uracil-5-)-methyltransferase [Haemophilus influenzae 6P18H1] gi|229812431|gb|EEP48121.1| tRNA (uracil-5-)-methyltransferase [Haemophilus influenzae 6P18H1] Length = 363 Score = 426 bits (1095), Expect = e-117, Method: Composition-based stats. Identities = 202/361 (55%), Positives = 264/361 (73%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L I QY + L +K+++L ++ F P++Q+F S HYRMRAEF IWH+ D YHIMFD Sbjct: 3 LPISQYNELLQKKLEKLTALLHPFNAPDIQVFDSPTSHYRMRAEFRIWHEQSDFYHIMFD 62 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 Q T +R R+D F S LIN +M ++ ++ + +L KLFQIDYL++ S++ IV+L+YH Sbjct: 63 QATLQRYRVDEFPIASTLINRMMQILLPLLKQQEVLHKKLFQIDYLSTLSNKIIVSLLYH 122 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + L + W A L+D L + + +Q+IGRA+K KIC ++DYVDE L V GR +YRQ+E Sbjct: 123 KTLTEEWESAAKNLKDLLEKQDFDVQIIGRASKQKICFEQDYVDEVLPVNGRNYVYRQVE 182 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N MLEW + T+ +GDLLELYCGNGNFS+ LA++F +VLA EI+KPSV Sbjct: 183 NSFTQPNATVNCKMLEWAIDCTQNSEGDLLELYCGNGNFSIALAQNFRKVLATEISKPSV 242 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA++NIA N V+N++I+RMS++EFTQAM R FNRLK ID+ SY TIFVDPPR+GL Sbjct: 243 AAAQFNIAENKVDNLQIIRMSAEEFTQAMNGARAFNRLKGIDLKSYECNTIFVDPPRAGL 302 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D TV +VQ Y ILYISCNP +LC +L LS TH IE+ ALFDQFPYT HME GV L+R Sbjct: 303 DPDTVKLVQNYDRILYISCNPHTLCDNLVELSKTHRIEKAALFDQFPYTDHMESGVWLIR 362 Query: 365 K 365 K Sbjct: 363 K 363 >gi|134035059|sp|Q0I1I7|TRMA_HAES1 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT Length = 366 Score = 426 bits (1095), Expect = e-117, Method: Composition-based stats. Identities = 204/363 (56%), Positives = 269/363 (74%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L I+QY LAEK +L +++ F P L +F SE H+RMRAEF IWH+ DD YHIMFD Sbjct: 4 LPIEQYSALLAEKQQKLTELLAPFNSPPLDVFASETSHFRMRAEFRIWHEQDDFYHIMFD 63 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 Q+TK+R RID F S LIN +M+ ++ ++ +L +LFQIDYL++ S++ IV+L+YH Sbjct: 64 QKTKQRFRIDQFPIASQLINQMMLALLPLLKQHNILTHRLFQIDYLSTLSNKIIVSLLYH 123 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + L++ W + A +L+ L + + +Q+IGRANK KICL +D+VDE L V + IYRQ+E Sbjct: 124 KTLNEEWLQAATQLKQQLIKQGFDVQIIGRANKQKICLQQDFVDEILPVKNQQYIYRQVE 183 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N MLEW + TK QGDLLELYCGNGNFS+ LA++F +VLA EIAKPSV Sbjct: 184 NSFTQPNATVNCKMLEWAIDCTKNSQGDLLELYCGNGNFSIALAQNFRKVLATEIAKPSV 243 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA++NIAAN ++N+ I+RMS+++FTQAM R FNRLK I++ Y+ TIFVDPPR+GL Sbjct: 244 SAAQFNIAANKIDNLHIIRMSAEDFTQAMNGVRAFNRLKGINLQDYQCNTIFVDPPRAGL 303 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D ATV +VQ Y ILYISCNP +LC +L L+ TH IE+ ALFDQFPYT HME GV L++ Sbjct: 304 DMATVKLVQNYERILYISCNPYTLCENLQELTKTHRIEKAALFDQFPYTEHMESGVWLIK 363 Query: 365 KPS 367 K + Sbjct: 364 KSN 366 >gi|269103682|ref|ZP_06156379.1| tRNA (Uracil54-C5-)-methyltransferase [Photobacterium damselae subsp. damselae CIP 102761] gi|268163580|gb|EEZ42076.1| tRNA (Uracil54-C5-)-methyltransferase [Photobacterium damselae subsp. damselae CIP 102761] Length = 368 Score = 425 bits (1094), Expect = e-117, Method: Composition-based stats. Identities = 196/359 (54%), Positives = 261/359 (72%), Gaps = 2/359 (0%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTK 68 Y+ QL EK R++ + F P L+++ S HYRMRAEF +WH+G+DLY+IMF+QQT+ Sbjct: 10 DYQHQLDEKAQRIQNIFADFDTPELEVYASPAEHYRMRAEFRVWHEGEDLYYIMFNQQTR 69 Query: 69 ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLD 128 E+ R+D F S LIN LM ++ ++ LR KLFQ+D+L++ S + +V+++YHR LD Sbjct: 70 EKYRVDQFPAASRLINDLMPLLIEAVKPHRSLRHKLFQVDFLSTLSGEILVSMLYHRQLD 129 Query: 129 DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFT 188 + W A L+ L+ +++ +IGRA K K LD+++V E+L V RTL Y+Q+ENSFT Sbjct: 130 EEWETLAKALKQQLNDEGFKLNIIGRARKQKKVLDQEFVIEKLNVFDRTLTYKQVENSFT 189 Query: 189 QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248 QPN + MLEW + T+ QGDLLELYCGNGNFSL LA++F+RVLA E+AKPSVE+A+ Sbjct: 190 QPNGTVAQKMLEWAVDCTRDSQGDLLELYCGNGNFSLALAQNFERVLATELAKPSVESAQ 249 Query: 249 YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGLDD 306 YNIA N+++NV+I+RMS++EFT+AM REF RLKD ID+ SY TIFVDPPRSG+D+ Sbjct: 250 YNIAVNNIDNVQIIRMSAEEFTEAMEGRREFRRLKDNNIDLQSYNCNTIFVDPPRSGMDE 309 Query: 307 ATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 T MVQ Y I+YISCNP++L +L ILS TH I R ALFDQFPYT HME GV L RK Sbjct: 310 GTCRMVQGYERIMYISCNPETLKENLDILSETHRITRFALFDQFPYTHHMEAGVFLERK 368 >gi|190151336|ref|YP_001969861.1| tRNA (uracil-5-)-methyltransferase [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|303251754|ref|ZP_07337925.1| tRNA (uracil-5-)-methyltransferase [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307249054|ref|ZP_07531062.1| tRNA (uracil-5-)-methyltransferase [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307264691|ref|ZP_07546271.1| tRNA (uracil-5-)-methyltransferase [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|226706005|sp|B3GZC6|TRMA_ACTP7 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|189916467|gb|ACE62719.1| tRNA (uracil-5-)-methyltransferase [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|302649184|gb|EFL79369.1| tRNA (uracil-5-)-methyltransferase [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|306854512|gb|EFM86707.1| tRNA (uracil-5-)-methyltransferase [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306870003|gb|EFN01767.1| tRNA (uracil-5-)-methyltransferase [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 368 Score = 425 bits (1094), Expect = e-117, Method: Composition-based stats. Identities = 201/367 (54%), Positives = 266/367 (72%), Gaps = 5/367 (1%) Query: 4 TLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHD-----GDDL 58 L I++Y LAEK L +++ F P L++F SE H+RMRAEF +WHD ++L Sbjct: 2 NLPIERYADLLAEKAKNLTALLVPFNPPELEVFESETSHFRMRAEFRVWHDTNEVGENEL 61 Query: 59 YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAI 118 YHIMFDQ+TK+R R++ F + LIN +M ++A I+ LL KLFQ+DYL++ S + Sbjct: 62 YHIMFDQETKQRYRVEQFPIANHLINKMMSSLLAEIKGNELLTRKLFQVDYLSTLSGEIA 121 Query: 119 VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTL 178 V+++YH+ L++ W+ A L+ L + +++Q+IGRA K KI LDRDYV+E L V GR L Sbjct: 122 VSMLYHKKLNEEWQAEAAALKARLEHQGFKVQIIGRATKQKIALDRDYVEEVLPVDGRNL 181 Query: 179 IYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVE 238 IYRQ+ENSFTQPNA +N+ MLEW + T+ GDLLELYCGNGNFS+ LA +F +VLA E Sbjct: 182 IYRQVENSFTQPNAKMNIKMLEWARSCTRHSSGDLLELYCGNGNFSIALAENFRQVLATE 241 Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298 I+K SV++A+YNI N ++N++I+RMS++EFTQAM REFNRLK ID+ +Y TIFVD Sbjct: 242 ISKSSVQSAQYNIEQNGIDNLQIIRMSAEEFTQAMNGVREFNRLKGIDLKAYDCNTIFVD 301 Query: 299 PPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMEC 358 PPR+GLD T+ MVQAY ILYISCNP +L +L LS TH IER ALFDQFPYT H+E Sbjct: 302 PPRAGLDQDTLNMVQAYERILYISCNPYTLAENLRQLSLTHRIERAALFDQFPYTHHVES 361 Query: 359 GVLLVRK 365 GV L+RK Sbjct: 362 GVWLIRK 368 >gi|126209433|ref|YP_001054658.1| tRNA (uracil-5-)-methyltransferase [Actinobacillus pleuropneumoniae L20] gi|166988114|sp|A3N3R7|TRMA_ACTP2 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|126098225|gb|ABN75053.1| tRNA (uracil-5-)-methyltransferase [Actinobacillus pleuropneumoniae serovar 5b str. L20] Length = 368 Score = 425 bits (1094), Expect = e-117, Method: Composition-based stats. Identities = 201/367 (54%), Positives = 264/367 (71%), Gaps = 5/367 (1%) Query: 4 TLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHD-----GDDL 58 L I+QY LAEK L ++ F P L++F SE H+RMRAEF +WHD ++L Sbjct: 2 NLPIEQYADLLAEKAKNLTALLAPFNPPELEVFESETGHFRMRAEFRVWHDTNEVGENEL 61 Query: 59 YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAI 118 YHIMFDQ+TK+R ++ F + LIN +M ++A I+ LL KLFQ+DYL++ S + Sbjct: 62 YHIMFDQETKQRYCVEQFPIANHLINKMMSSLLAEIKGNELLTRKLFQVDYLSTLSGEIA 121 Query: 119 VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTL 178 V+++YH+ L++ W+ A L+ L + +++Q+IGRA K KI LDRDYV+E L V GR L Sbjct: 122 VSMLYHKKLNEEWQAEAAALKARLEHQGFKVQIIGRATKQKIALDRDYVEEVLPVDGRNL 181 Query: 179 IYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVE 238 IYRQ+ENSFTQPNA +N+ MLEW + T+ GDLLELYCGNGNFS+ LA +F +VLA E Sbjct: 182 IYRQVENSFTQPNAKMNIKMLEWARSCTRHSSGDLLELYCGNGNFSIALAENFRKVLATE 241 Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298 I+K SV++A+YNI N ++N++I+RMS++EFTQAM REFNRLK ID+ +Y TIFVD Sbjct: 242 ISKSSVQSAQYNIEQNGIDNLQIIRMSAEEFTQAMNGVREFNRLKGIDLKAYDCNTIFVD 301 Query: 299 PPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMEC 358 PPR+GLD T+ MVQAY ILYISCNP +L +L LS TH IER ALFDQFPYT H+E Sbjct: 302 PPRAGLDQDTLNMVQAYERILYISCNPYTLAENLRQLSLTHRIERAALFDQFPYTHHVES 361 Query: 359 GVLLVRK 365 GV L+RK Sbjct: 362 GVWLIRK 368 >gi|117621352|ref|YP_858614.1| tRNA (uracil-5-)-methyltransferase [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|134035054|sp|A0KQR3|TRMA_AERHH RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|117562759|gb|ABK39707.1| tRNA (uracil-5-)-methyltransferase [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 377 Score = 425 bits (1094), Expect = e-117, Method: Composition-based stats. Identities = 211/357 (59%), Positives = 270/357 (75%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTK 68 Y+ QL EK +RL + F +P L++ S HYRMRAEF IWHDGDDLYH M+ TK Sbjct: 19 DYQAQLDEKRERLCGLFADFTLPALEVHASPAEHYRMRAEFRIWHDGDDLYHCMYAPATK 78 Query: 69 ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLD 128 E +R+D F S LIN LM ++ +R P+LR KLFQIDYL++QS Q V+L+YHR L+ Sbjct: 79 EIIRVDQFPTASRLINQLMPVLLEGLRPHPVLRRKLFQIDYLSTQSGQICVSLLYHRKLE 138 Query: 129 DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFT 188 W++ A L+ L A+ +++QLIGRA+K KICL ++V ERLTV GR L+Y+Q+ENSFT Sbjct: 139 SEWQQAAEALQADLRAKGFELQLIGRAHKQKICLGEEFVIERLTVQGRQLVYKQVENSFT 198 Query: 189 QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248 QPNA IN ML W L TKG +GDLLELYCGNGNFS+ LA++F +VLA EIAKPSV++A+ Sbjct: 199 QPNAAINEQMLGWALDVTKGSEGDLLELYCGNGNFSIALAQNFRKVLATEIAKPSVDSAQ 258 Query: 249 YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDAT 308 +NIAAN V+N+ I+RMS++EFT AMR EREFNRLK +D+ +Y+ TIFVDPPR+GLDDAT Sbjct: 259 FNIAANGVDNLIILRMSAEEFTMAMRGEREFNRLKGVDLGAYQCNTIFVDPPRAGLDDAT 318 Query: 309 VGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 V +VQ Y +ILYISCNP++L ++++L TH I R ALFDQFP+T HME GV L RK Sbjct: 319 VKLVQDYDNILYISCNPETLQANMAVLGETHEIARFALFDQFPWTHHMEAGVYLKRK 375 >gi|223041752|ref|ZP_03611945.1| tRNA (uracil-5-)-methyltransferase [Actinobacillus minor 202] gi|223017436|gb|EEF15854.1| tRNA (uracil-5-)-methyltransferase [Actinobacillus minor 202] Length = 369 Score = 425 bits (1092), Expect = e-117, Method: Composition-based stats. Identities = 199/366 (54%), Positives = 264/366 (72%), Gaps = 5/366 (1%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDL-----Y 59 L +QY LA+KV L ++ FQ P L++F S+P H+RMRAEF +WHD ++ Y Sbjct: 3 LATEQYADLLAKKVANLTALLSPFQAPELEVFASKPQHFRMRAEFRVWHDKNEKGENELY 62 Query: 60 HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119 HIMFD +TK+R R+D F + LIN +M ++A I+ LL KLFQIDYL++ S + V Sbjct: 63 HIMFDPETKQRYRVDQFPIANELINKMMKSLLAEIQGSELLTRKLFQIDYLSTLSGEIAV 122 Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179 +L+YH+ L++ W E A L+ L + +++QLIGRA K KI LD DYV+E L + G+ + Sbjct: 123 SLLYHKALNEEWVEQAQLLKQRLTEQGFRVQLIGRATKQKIALDHDYVEEVLPIHGKNYV 182 Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEI 239 YRQ+ENSFTQPNA IN+ MLEW + T+ QGDLLELYCGNGNFS+ LA +F +VLA EI Sbjct: 183 YRQVENSFTQPNAEINIKMLEWARSCTQNSQGDLLELYCGNGNFSIALAENFRKVLATEI 242 Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299 +K SV++A+YNI N ++N++I+RMS++EFTQAM REFNRLK ID+ SY TIFVDP Sbjct: 243 SKSSVQSAQYNIEQNGIDNLQIIRMSAEEFTQAMNGVREFNRLKGIDLKSYDCNTIFVDP 302 Query: 300 PRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359 PR+GLD T+ MVQ Y ILYISCNP++L +L LS TH IER ALFDQFP+T H+E G Sbjct: 303 PRAGLDPDTLNMVQDYERILYISCNPNTLAENLQQLSQTHRIERAALFDQFPFTHHIESG 362 Query: 360 VLLVRK 365 V L+++ Sbjct: 363 VWLIKR 368 >gi|301169567|emb|CBW29168.1| tRNA (uracil-5-)-methyltransferase [Haemophilus influenzae 10810] Length = 363 Score = 424 bits (1091), Expect = e-117, Method: Composition-based stats. Identities = 203/361 (56%), Positives = 265/361 (73%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L I QY + L +K+++L ++ F P++Q+F S HYRMRAEF IWH+ DD YHIMFD Sbjct: 3 LPISQYNELLQKKLEKLTALLHPFNAPDIQVFDSPTSHYRMRAEFRIWHEQDDFYHIMFD 62 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 Q T +R R+D F S+LIN +M ++ ++ + +L KLFQIDYL++ S++ IV+L+YH Sbjct: 63 QATLQRYRVDEFPIASMLINRMMQTLLPLLKQQEVLHKKLFQIDYLSTLSNKIIVSLLYH 122 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + L + W A L+D L + + +Q+IGRA+K KIC ++DYVDE L V GR +YRQ+E Sbjct: 123 KTLTEEWESAAKNLKDLLEKQDFDVQIIGRASKQKICFEQDYVDEVLPVNGRNYVYRQVE 182 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N MLEW + T+ +GDLLELYCGNGNFS+ LA++F +VLA EIAKPSV Sbjct: 183 NSFTQPNATVNCKMLEWAIDCTQNSEGDLLELYCGNGNFSIALAQNFRKVLATEIAKPSV 242 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA++NIA N V+N++I+RMS++EFTQAM R FNRLK ID+ SY TIFVDPPR+GL Sbjct: 243 AAAQFNIAENKVDNLQIIRMSAEEFTQAMNGVRAFNRLKGIDLKSYECNTIFVDPPRAGL 302 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D TV +VQ Y ILYISCNP + C +L LS TH IE+ ALFDQFPYT HME GV L+R Sbjct: 303 DPDTVKLVQNYDRILYISCNPHTQCDNLVELSKTHRIEKAALFDQFPYTDHMESGVWLIR 362 Query: 365 K 365 K Sbjct: 363 K 363 >gi|254227154|ref|ZP_04920690.1| tRNA (uracil-5-)-methyltransferase [Vibrio cholerae V51] gi|125620322|gb|EAZ48720.1| tRNA (uracil-5-)-methyltransferase [Vibrio cholerae V51] Length = 369 Score = 424 bits (1091), Expect = e-117, Method: Composition-based stats. Identities = 201/360 (55%), Positives = 268/360 (74%), Gaps = 2/360 (0%) Query: 7 IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66 + Y+ QLA+K+ RL+ M + + +P L++F S +YRMRAEF IWH+GDD+Y+IMF+Q+ Sbjct: 8 PELYQAQLADKIARLKAMFVDYSMPELEVFESPVANYRMRAEFRIWHEGDDMYYIMFNQE 67 Query: 67 TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL 126 T+E+ R+D F S LIN LM +M ++ P+LR KLFQ+D+L++ S + +V+L+YHR Sbjct: 68 TREKYRVDQFPAASRLINDLMPLLMDAMKGSPILRHKLFQVDFLSTLSGEILVSLLYHRQ 127 Query: 127 LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS 186 L + W A L+ L+ + + LIGRA K K+ LDRDYV E+L V G+ +Y+Q+ENS Sbjct: 128 LSEEWISAAQALKQRLNDEGFNLNLIGRARKMKVVLDRDYVVEKLQVNGQPYVYKQVENS 187 Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246 FTQPNA + MLEW + T+ +GDLLELYCGNGNFSL LA++F+RVLA E+AKPSVEA Sbjct: 188 FTQPNAKVAEKMLEWAVDCTQENKGDLLELYCGNGNFSLALAQNFERVLATELAKPSVEA 247 Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGL 304 A++NIAAN + NV+I+RMS++EFTQAM +REFNRLKD +D+ SYR TIFVDPPRSG+ Sbjct: 248 AQFNIAANQIGNVQIIRMSAEEFTQAMEGKREFNRLKDAGVDLQSYRCNTIFVDPPRSGM 307 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D T MVQ Y ILYISCNP++L +L +L TH + R ALFDQFPYT HME GV+L R Sbjct: 308 DIDTCKMVQGYERILYISCNPETLQENLQVLGETHQVVRFALFDQFPYTHHMEAGVMLER 367 >gi|16272789|ref|NP_439008.1| tRNA (uracil-5-)-methyltransferase [Haemophilus influenzae Rd KW20] gi|68249442|ref|YP_248554.1| tRNA (uracil-5-)-methyltransferase [Haemophilus influenzae 86-028NP] gi|260579939|ref|ZP_05847769.1| tRNA (uracil-5-)-methyltransferase [Haemophilus influenzae RdAW] gi|1174775|sp|P31812|TRMA_HAEIN RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|81336130|sp|Q4QM53|TRMA_HAEI8 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|1573862|gb|AAC22505.1| tRNA (uracil-5-)-methyltransferase (trmA) [Haemophilus influenzae Rd KW20] gi|68057641|gb|AAX87894.1| tRNA (Uracil-5-)-methyltransferase [Haemophilus influenzae 86-028NP] gi|260093223|gb|EEW77156.1| tRNA (uracil-5-)-methyltransferase [Haemophilus influenzae RdAW] Length = 363 Score = 424 bits (1091), Expect = e-117, Method: Composition-based stats. Identities = 203/361 (56%), Positives = 266/361 (73%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L I QY + L +K+++L ++ F P++Q+F S HYRMRAEF IWH+ DD YHIMFD Sbjct: 3 LPISQYNELLQKKLEKLTALLHPFNAPDIQVFDSPTSHYRMRAEFRIWHEQDDFYHIMFD 62 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 Q T +R R+D F S+LIN +M ++ ++ + +L KLFQIDYL++ S++ IV+L+YH Sbjct: 63 QATLQRYRVDEFPIASMLINRMMQTLLPLLKQQEVLHKKLFQIDYLSTLSNKIIVSLLYH 122 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + L + W A L+D L + + +Q+IGRA+K KIC ++DYVDE L V GR +YRQ+E Sbjct: 123 KTLTEEWESAAKNLKDLLEKQDFDVQIIGRASKQKICFEQDYVDEVLPVNGRNYVYRQVE 182 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N MLEW + T+ +GDLLELYCGNGNFS+ LA++F +VLA EIAKPSV Sbjct: 183 NSFTQPNATVNCKMLEWAIDCTQNSEGDLLELYCGNGNFSIALAQNFRKVLATEIAKPSV 242 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA++NIA N V+N++I+RMS++EFTQAM R FNRLK ID+ SY TIFVDPPR+GL Sbjct: 243 AAAQFNIAENKVDNLQIIRMSAEEFTQAMNGVRAFNRLKGIDLKSYECNTIFVDPPRAGL 302 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D TV +VQ Y ILYISCNP +LC +L LS TH IE+ ALFDQFPYT HME G+ L+R Sbjct: 303 DPDTVKLVQNYDRILYISCNPHTLCDNLVELSKTHRIEKAALFDQFPYTDHMESGLWLIR 362 Query: 365 K 365 K Sbjct: 363 K 363 >gi|240948863|ref|ZP_04753219.1| tRNA (uracil-5-)-methyltransferase [Actinobacillus minor NM305] gi|240296678|gb|EER47289.1| tRNA (uracil-5-)-methyltransferase [Actinobacillus minor NM305] Length = 369 Score = 424 bits (1091), Expect = e-117, Method: Composition-based stats. Identities = 199/366 (54%), Positives = 264/366 (72%), Gaps = 5/366 (1%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDL-----Y 59 L +QY LA+KV L ++ FQ P L++F S+P H+RMRAEF +WHD ++ Y Sbjct: 3 LATEQYADLLAKKVANLTALLSPFQAPELEVFASKPQHFRMRAEFRVWHDKNEKGENELY 62 Query: 60 HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119 HIMFD +TK+R R+D F + LIN +M ++A I+ LL KLFQIDYL++ S + V Sbjct: 63 HIMFDPETKQRYRVDQFPIANELINKMMQSLLAEIQGNELLTRKLFQIDYLSTLSGEIAV 122 Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179 +L+YH+ L++ W E A L+ L + ++IQLIGRA K KI LD DYV+E L + G+ + Sbjct: 123 SLLYHKALNEEWVEQAKLLKHRLTEQGFRIQLIGRATKQKIALDYDYVEEVLPIHGKNYV 182 Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEI 239 YRQ+ENSFTQPNA +N+ MLEW + T+ QGDLLELYCGNGNFS+ LA +F +VLA EI Sbjct: 183 YRQVENSFTQPNAEMNIKMLEWARSCTQNSQGDLLELYCGNGNFSIALAENFRKVLATEI 242 Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299 +K SV++A+YNI N ++N++I+RMS++EFTQAM REFNRLK ID+ SY TIFVDP Sbjct: 243 SKSSVQSAQYNIEQNGIDNLQIIRMSAEEFTQAMNGVREFNRLKGIDLKSYDCNTIFVDP 302 Query: 300 PRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359 PR+GLD T+ MVQ Y ILYISCNP++L +L LS TH IER ALFDQFP+T H+E G Sbjct: 303 PRAGLDPDTLNMVQGYERILYISCNPNTLAENLQQLSQTHRIERAALFDQFPFTHHIESG 362 Query: 360 VLLVRK 365 V L+++ Sbjct: 363 VWLIKR 368 >gi|170718062|ref|YP_001783531.1| tRNA (uracil-5-)-methyltransferase [Haemophilus somnus 2336] gi|189036040|sp|B0UVN9|TRMA_HAES2 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|168826191|gb|ACA31562.1| tRNA (uracil-5-)-methyltransferase [Haemophilus somnus 2336] Length = 366 Score = 424 bits (1091), Expect = e-117, Method: Composition-based stats. Identities = 205/363 (56%), Positives = 268/363 (73%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L I+QY LAEK +L ++ F P L +F SE H+RMRAEF IWH+ DD YHIMFD Sbjct: 4 LPIEQYSALLAEKQQKLTALLAPFNSPPLDVFASETSHFRMRAEFRIWHEQDDFYHIMFD 63 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 Q+TK+R RID F S LIN +M+ ++ ++ +L +LFQIDYL++ S++ IV+L+YH Sbjct: 64 QKTKQRFRIDQFPIASQLINQMMLALLPLLKQHNILTHRLFQIDYLSTLSNKIIVSLLYH 123 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + L++ W + A +L+ L + + +Q+IGRANK KICL +D+VDE L V + IYRQ+E Sbjct: 124 KTLNEEWLQAATQLKQQLIKQGFDVQIIGRANKQKICLQQDFVDEILPVKNQQYIYRQVE 183 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N MLEW + TK QGDLLELYCGNGNFS+ LA++F +VLA EIAKPSV Sbjct: 184 NSFTQPNATVNCKMLEWAINCTKNSQGDLLELYCGNGNFSIALAQNFRKVLATEIAKPSV 243 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA++NIAAN ++N+ I+RMS+++FTQAM R FNRLK I++ Y+ TIFVDPPRSGL Sbjct: 244 SAAQFNIAANKIDNLHIIRMSAEDFTQAMNGVRAFNRLKGINLQDYQCNTIFVDPPRSGL 303 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D ATV +VQ Y ILYISCNP +LC +L L+ TH IE+ ALFDQFPYT HME GV L++ Sbjct: 304 DMATVKLVQNYERILYISCNPYTLCENLQELTKTHRIEKAALFDQFPYTEHMESGVWLIK 363 Query: 365 KPS 367 K + Sbjct: 364 KSN 366 >gi|262163703|ref|ZP_06031444.1| tRNA (uracil-5-)-methyltransferase [Vibrio mimicus VM223] gi|262027919|gb|EEY46583.1| tRNA (uracil-5-)-methyltransferase [Vibrio mimicus VM223] Length = 369 Score = 424 bits (1091), Expect = e-117, Method: Composition-based stats. Identities = 201/362 (55%), Positives = 269/362 (74%), Gaps = 2/362 (0%) Query: 7 IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66 + Y+ QLA+K+ RL+ M + + +P L++F S +YRMRAEF IWH+GDD+Y+IMF+Q+ Sbjct: 8 PELYQAQLADKIARLKAMFVNYSMPELEVFESPVANYRMRAEFRIWHEGDDMYYIMFNQE 67 Query: 67 TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL 126 T+E+ R+D F S LIN LM +M ++ +LR KLFQ+D+L++ S + +V+L+YHR Sbjct: 68 TREKYRVDQFPAASRLINDLMPLLMDAMKGSHILRHKLFQVDFLSTLSGEVLVSLLYHRQ 127 Query: 127 LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS 186 L++ W A L+ L+ + + LIGRA K K+ LDRDYV E+L V G+ +Y+Q+ENS Sbjct: 128 LNEEWNTAAQALKQRLNDEGFNLNLIGRARKMKVVLDRDYVVEKLQVNGQPYVYKQVENS 187 Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246 FTQPNA + MLEW + T+ GDLLELYCGNGNFSL LA++FDRVLA E+AKPSVEA Sbjct: 188 FTQPNAKVAEKMLEWAVDCTQDSNGDLLELYCGNGNFSLALAQNFDRVLATELAKPSVEA 247 Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGL 304 A++NIAAN ++NV+I+RMS++EFTQAM +REFNRLKD +++ SYR TIFVDPPRSG+ Sbjct: 248 AQFNIAANQIDNVQIIRMSAEEFTQAMEGKREFNRLKDAGVNLQSYRCNTIFVDPPRSGM 307 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D T MVQ Y ILYISCNP++L +L +L TH + R ALFDQFPYT HME GV+L R Sbjct: 308 DIDTCKMVQGYERILYISCNPETLQENLQVLGETHQVVRFALFDQFPYTHHMEAGVMLER 367 Query: 365 KP 366 K Sbjct: 368 KK 369 >gi|330827816|ref|YP_004390768.1| tRNA (uracil-5-)-methyltransferase [Aeromonas veronii B565] gi|328802952|gb|AEB48151.1| tRNA (uracil-5-)-methyltransferase [Aeromonas veronii B565] Length = 377 Score = 424 bits (1091), Expect = e-116, Method: Composition-based stats. Identities = 211/357 (59%), Positives = 272/357 (76%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTK 68 Y+ QL EK RL ++ F +P L++ S +YRMRAEF IWH+GDDL+H M+ TK Sbjct: 19 DYQAQLDEKRARLTELFAGFTLPALEVHSSPAEYYRMRAEFRIWHEGDDLFHCMYAPATK 78 Query: 69 ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLD 128 E ++ID+F S LIN LM ++ +R P+LR KLFQIDYL++QS Q IV+L+YHR L+ Sbjct: 79 EIIKIDHFPTASRLINQLMPLLLEGLRPHPVLRRKLFQIDYLSTQSGQIIVSLLYHRKLE 138 Query: 129 DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFT 188 W++ A L+ L A+ +++QLIGRA+K KICL D+V E+L VAGR LIY+Q+ENSFT Sbjct: 139 AEWQQAAEALQADLRAKGFELQLIGRAHKQKICLGDDFVIEQLNVAGRQLIYKQVENSFT 198 Query: 189 QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248 QPNA IN ML W L TKG +GDLLELYCGNGNFS+ LA++F +VLA EIAKPSV++A+ Sbjct: 199 QPNATINEQMLAWALDVTKGSEGDLLELYCGNGNFSIALAQNFRKVLATEIAKPSVDSAQ 258 Query: 249 YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDAT 308 +NIAAN V+N+ I+RMS++EFT AMR EREFNRLK +D+ SY+ TIFVDPPR+GLDDAT Sbjct: 259 FNIAANGVDNLIILRMSAEEFTMAMRGEREFNRLKGVDLKSYQCNTIFVDPPRAGLDDAT 318 Query: 309 VGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 V +VQ Y +ILYISCNP++L ++++L TH I R ALFDQFP+T HME GV L RK Sbjct: 319 VKLVQEYDNILYISCNPETLQANMAVLGETHEIARFALFDQFPWTHHMEAGVYLRRK 375 >gi|237807152|ref|YP_002891592.1| tRNA (uracil-5-)-methyltransferase [Tolumonas auensis DSM 9187] gi|259547838|sp|C4L9A7|TRMA_TOLAT RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|237499413|gb|ACQ92006.1| tRNA (uracil-5-)-methyltransferase [Tolumonas auensis DSM 9187] Length = 367 Score = 424 bits (1090), Expect = e-116, Method: Composition-based stats. Identities = 211/357 (59%), Positives = 267/357 (74%), Gaps = 1/357 (0%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDG-DDLYHIMFDQQTK 68 Y+QQL EK RL Q++ FQ P ++F S P HYRMRAEF IWH+G D+LY++MF+ +TK Sbjct: 11 YQQQLHEKQQRLTQLLAPFQAPEPEVFASAPSHYRMRAEFRIWHEGVDELYYVMFNSETK 70 Query: 69 ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLD 128 +R + F GS LIN LM ++ IR L+ KLFQID+LT+ S +A+++L+YH+ L+ Sbjct: 71 QRYYVHEFPTGSQLINRLMPRLLELIRGNHTLKYKLFQIDFLTTLSGEALISLLYHKTLN 130 Query: 129 DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFT 188 +AW+ A LR AL A ++ ++GRA+K KI L+R+YV E+L V RTL Y Q+ENSFT Sbjct: 131 EAWQPAATELRQALRAEFGEVDVVGRAHKQKIVLEREYVLEQLQVGDRTLEYMQVENSFT 190 Query: 189 QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248 QPNAG+N ML W T QGDLLELYCGNGNFSL LA++F+RVLA EIAKPSV AA+ Sbjct: 191 QPNAGMNQQMLGWATDVTADCQGDLLELYCGNGNFSLALAKNFNRVLATEIAKPSVHAAQ 250 Query: 249 YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDAT 308 +NIA N ++NV+I+RMS++EFTQAM EREFNRLK ID+ SY+ TI VDPPR+GLD AT Sbjct: 251 HNIAVNKIDNVQILRMSAEEFTQAMNGEREFNRLKGIDLQSYQCNTILVDPPRAGLDPAT 310 Query: 309 VGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 V M+QAY ILYISCNP++LC +L L TH I R ALFDQFP+T HME GV LVRK Sbjct: 311 VAMIQAYEQILYISCNPETLCDNLKTLCQTHNIARCALFDQFPFTHHMESGVWLVRK 367 >gi|145297241|ref|YP_001140082.1| tRNA (uracil-5-)-methyltransferase [Aeromonas salmonicida subsp. salmonicida A449] gi|166988115|sp|A4SHG2|TRMA_AERS4 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|142850013|gb|ABO88334.1| tRNA (uracil-5)-methyltransferase [Aeromonas salmonicida subsp. salmonicida A449] Length = 377 Score = 424 bits (1090), Expect = e-116, Method: Composition-based stats. Identities = 211/357 (59%), Positives = 272/357 (76%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTK 68 Y+ QL EK +RL Q+ F P L++ S HYRMRAEF IWH+GDDL+H M+ Q TK Sbjct: 19 DYQAQLDEKRERLTQLFAGFNPPALEVHASPAEHYRMRAEFRIWHEGDDLFHCMYAQATK 78 Query: 69 ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLD 128 E +R+D+F SLLIN LM ++A +R +LR KLFQIDYL++QS Q IV+L+YHR L+ Sbjct: 79 EIIRVDHFPTASLLINQLMPVLLAGLRPHFVLRRKLFQIDYLSTQSGQIIVSLLYHRKLE 138 Query: 129 DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFT 188 W++ A L+ L A+ + ++LIGRA+K KICL D+V E+L VAGR L Y+Q+ENSFT Sbjct: 139 AEWQQAAETLQADLQAQGFDLRLIGRAHKQKICLGDDFVIEQLNVAGRQLTYKQVENSFT 198 Query: 189 QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248 QPNA IN ML W L T+G +GDLLELYCGNGNFS+ LA++F +VLA EIAKPSV++A+ Sbjct: 199 QPNAAINEQMLGWALDVTRGSEGDLLELYCGNGNFSIALAQNFRKVLATEIAKPSVDSAQ 258 Query: 249 YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDAT 308 +NIAAN V+N+ I+RMS++EFT AMR EREFNRLK +D+ SY+ TIFVDPPR+GLDDAT Sbjct: 259 FNIAANGVDNLIILRMSAEEFTMAMRGEREFNRLKGVDLKSYQCNTIFVDPPRAGLDDAT 318 Query: 309 VGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 V +VQ Y +ILYISCNP++L ++++L TH + R ALFDQFP+T HME GV L RK Sbjct: 319 VKLVQEYDNILYISCNPETLQANMAVLGETHEVARFALFDQFPWTHHMEAGVYLKRK 375 >gi|329122854|ref|ZP_08251426.1| tRNA (uracil-5-)-methyltransferase [Haemophilus aegyptius ATCC 11116] gi|327472118|gb|EGF17556.1| tRNA (uracil-5-)-methyltransferase [Haemophilus aegyptius ATCC 11116] Length = 363 Score = 424 bits (1090), Expect = e-116, Method: Composition-based stats. Identities = 204/361 (56%), Positives = 266/361 (73%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L I QY + L +K+++L ++ F P++Q+F S HYRMRAEF IWH+ DD YHIMFD Sbjct: 3 LPIFQYNELLQKKLEKLTALLRPFNAPDIQVFDSPTSHYRMRAEFRIWHEQDDFYHIMFD 62 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 Q T +R R+D F S+LIN +M ++ ++ + +L KLFQIDYL++ S++ IV+L+YH Sbjct: 63 QATLQRYRVDEFPIASMLINRMMQTLLPLLKQQEVLHKKLFQIDYLSTLSNKIIVSLLYH 122 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + L + W A L+D L + + +Q+IGRA+K KIC ++DYVDE L V GR +YRQ+E Sbjct: 123 KTLTEEWESAAKNLKDLLEKQDFDVQVIGRASKQKICFEQDYVDEVLPVNGRNYVYRQVE 182 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N MLEW + T+ +GDLLELYCGNGNFS+ LA++F +VLA EIAKPSV Sbjct: 183 NSFTQPNATVNCKMLEWAIDCTQNSEGDLLELYCGNGNFSIALAQNFRKVLATEIAKPSV 242 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA++NIA N V+N++I+RMS++EFTQAM R FNRLK ID+ SY TIFVDPPR+GL Sbjct: 243 AAAQFNIAENKVDNLQIIRMSAEEFTQAMNGVRAFNRLKGIDLKSYECNTIFVDPPRAGL 302 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D TV +VQ Y ILYISCNP +LC +L LS TH IE+ ALFDQFPYT HME GV L+R Sbjct: 303 DPDTVKLVQNYDRILYISCNPHTLCDNLVELSKTHRIEKAALFDQFPYTDHMESGVWLIR 362 Query: 365 K 365 K Sbjct: 363 K 363 >gi|262172910|ref|ZP_06040588.1| tRNA (uracil-5-)-methyltransferase [Vibrio mimicus MB-451] gi|261893986|gb|EEY39972.1| tRNA (uracil-5-)-methyltransferase [Vibrio mimicus MB-451] Length = 369 Score = 424 bits (1090), Expect = e-116, Method: Composition-based stats. Identities = 201/362 (55%), Positives = 269/362 (74%), Gaps = 2/362 (0%) Query: 7 IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66 + Y+ QLA+K+ RL+ M + + +P L++F S +YRMRAEF IWH+GDD+Y+IMF+Q+ Sbjct: 8 PELYQAQLADKIARLKAMFVNYSMPELEVFESPVANYRMRAEFRIWHEGDDMYYIMFNQE 67 Query: 67 TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL 126 T+E+ R+D F S LIN LM +M ++ +LR KLFQ+D+L++ S + +V+L+YHR Sbjct: 68 TREKYRVDQFPAASRLINDLMPLLMDAMKGSHILRHKLFQVDFLSTLSGEVLVSLLYHRQ 127 Query: 127 LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS 186 L++ W A L+ L+ + + LIGRA K K+ LDRDYV E+L V G+ +Y+Q+ENS Sbjct: 128 LNEEWITAAQALKQRLNDEGFNLNLIGRARKMKVVLDRDYVVEKLQVNGQPYVYKQVENS 187 Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246 FTQPNA + MLEW + T+ GDLLELYCGNGNFSL LA++FDRVLA E+AKPSVEA Sbjct: 188 FTQPNAKVAEKMLEWAVDCTQDSNGDLLELYCGNGNFSLALAQNFDRVLATELAKPSVEA 247 Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGL 304 A++NIAAN ++NV+I+RMS++EFTQAM +REFNRLKD +++ SYR TIFVDPPRSG+ Sbjct: 248 AQFNIAANQIDNVQIIRMSAEEFTQAMEGKREFNRLKDAGVNLQSYRCNTIFVDPPRSGM 307 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D T MVQ Y ILYISCNP++L +L +L TH + R ALFDQFPYT HME GV+L R Sbjct: 308 DIDTCKMVQGYERILYISCNPETLQENLQVLGETHQVVRFALFDQFPYTHHMEAGVILER 367 Query: 365 KP 366 K Sbjct: 368 KK 369 >gi|145630596|ref|ZP_01786376.1| tRNA (uracil-5-)-methyltransferase [Haemophilus influenzae R3021] gi|144983986|gb|EDJ91428.1| tRNA (uracil-5-)-methyltransferase [Haemophilus influenzae R3021] Length = 363 Score = 423 bits (1088), Expect = e-116, Method: Composition-based stats. Identities = 202/361 (55%), Positives = 265/361 (73%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L I QY + L +K+++L ++ F P++Q+F S HYRMRAEF IWH+ DD YHIMFD Sbjct: 3 LPISQYNELLQKKLEKLTALLHPFNAPDIQVFDSPTSHYRMRAEFRIWHEQDDFYHIMFD 62 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 Q T +R R+D F S+LIN +M ++ ++ + +L KLFQIDYL++ S++ IV+L+YH Sbjct: 63 QATLQRYRVDEFPIASMLINRMMQTLLPLLKQQEVLHKKLFQIDYLSTLSNKIIVSLLYH 122 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + L + W A L+D L + + +Q+IGRA+K KIC ++DYVDE L V GR +YRQ+E Sbjct: 123 KTLTEEWESAAKNLKDLLKEQGFDVQIIGRASKQKICFEQDYVDEVLPVNGRNYVYRQVE 182 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N MLEW + T+ +GDLLELYCGNGNFS+ LA++F +VLA EIAKPSV Sbjct: 183 NSFTQPNATVNCKMLEWAIDCTQNSEGDLLELYCGNGNFSIALAQNFRKVLATEIAKPSV 242 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA++NIA N V+N++I+RMS++EFTQAM R FNRLK ID+ SY TIFVDPPR+GL Sbjct: 243 AAAQFNIAENKVDNLQIIRMSAEEFTQAMNGVRAFNRLKGIDLKSYECNTIFVDPPRAGL 302 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D TV +VQ Y ILYISCNP + C +L LS TH IE+ ALFDQFPYT HME G+ L+R Sbjct: 303 DPDTVKLVQNYDRILYISCNPHTQCDNLVELSKTHRIEKAALFDQFPYTDHMESGLWLIR 362 Query: 365 K 365 K Sbjct: 363 K 363 >gi|258622817|ref|ZP_05717834.1| tRNA (uracil-5-)-methyltransferase [Vibrio mimicus VM573] gi|258584878|gb|EEW09610.1| tRNA (uracil-5-)-methyltransferase [Vibrio mimicus VM573] Length = 369 Score = 423 bits (1088), Expect = e-116, Method: Composition-based stats. Identities = 201/362 (55%), Positives = 269/362 (74%), Gaps = 2/362 (0%) Query: 7 IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66 + Y+ QLA+K+ RL+ M + + +P L++F S +YRMRAEF IWH+GDD+Y+IMF+Q+ Sbjct: 8 PELYQAQLADKIARLKAMFVNYSMPELEVFESPVANYRMRAEFRIWHEGDDMYYIMFNQE 67 Query: 67 TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL 126 T+E+ R+D F S LIN LM +M ++ +LR KLFQ+D+L++ S + +V+L+YHR Sbjct: 68 TREKYRVDQFPAASRLINDLMPLLMDAMKGSHILRHKLFQVDFLSTLSGEVLVSLLYHRQ 127 Query: 127 LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS 186 L++ W A L+ L+ + + LIGRA K K+ LDRDYV E+L V G+ +Y+Q+ENS Sbjct: 128 LNEEWVTAAQALKQRLNDEGFNLNLIGRARKMKVVLDRDYVVEKLQVNGQPYVYKQVENS 187 Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246 FTQPNA + MLEW + T+ GDLLELYCGNGNFSL LA++FDRVLA E+AKPSVEA Sbjct: 188 FTQPNAKVAEKMLEWAVDCTQDSNGDLLELYCGNGNFSLALAQNFDRVLATELAKPSVEA 247 Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGL 304 A++NIAAN ++NV+I+RMS++EFTQAM +REFNRLKD +++ SYR TIFVDPPRSG+ Sbjct: 248 AQFNIAANQIDNVQIIRMSAEEFTQAMEGKREFNRLKDAGVNLQSYRCNTIFVDPPRSGM 307 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D T MVQ Y ILYISCNP++L +L +L TH + R ALFDQFPYT HME GV+L R Sbjct: 308 DIDTCKMVQGYERILYISCNPETLQENLQVLGETHQVVRFALFDQFPYTHHMEAGVMLER 367 Query: 365 KP 366 K Sbjct: 368 KK 369 >gi|260581665|ref|ZP_05849462.1| tRNA (uracil-5-)-methyltransferase [Haemophilus influenzae NT127] gi|260095258|gb|EEW79149.1| tRNA (uracil-5-)-methyltransferase [Haemophilus influenzae NT127] Length = 363 Score = 423 bits (1088), Expect = e-116, Method: Composition-based stats. Identities = 204/361 (56%), Positives = 266/361 (73%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L I QY + L +K+++L ++ F P++Q+F S HYRMRAEF IWH+ DD YHIMFD Sbjct: 3 LPISQYNELLQKKLEKLTALLHPFNAPDIQVFDSPTSHYRMRAEFRIWHEQDDFYHIMFD 62 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 Q T +R R+D F S+LIN +M ++ ++ + +L KLFQIDYL++ S++ IV+L+YH Sbjct: 63 QATLQRYRVDEFPIASMLINRMMQTLLPLLKQQEVLHKKLFQIDYLSTLSNKIIVSLLYH 122 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + L + W A L+D L + + +Q+IGRA+K KIC ++DYVDE L V GR +YRQ+E Sbjct: 123 KTLTEEWESAAKNLKDLLEKQGFDVQIIGRASKQKICFEQDYVDEVLPVNGRNYVYRQVE 182 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N MLEW + T+ +GDLLELYCGNGNFS+ LA++F +VLA EIAKPSV Sbjct: 183 NSFTQPNATVNCKMLEWTIDCTQNSEGDLLELYCGNGNFSIALAQNFRKVLATEIAKPSV 242 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA++NIA N V+N++I+RMS++EFTQAM R FNRLK ID+ SY TIFVDPPR+GL Sbjct: 243 AAAQFNIAENKVDNLQIIRMSAEEFTQAMNGARAFNRLKGIDLESYECNTIFVDPPRAGL 302 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D TV +VQ Y ILYISCNP +LC +L LS TH IE+ ALFDQFPYT HME GV L+R Sbjct: 303 DPDTVKLVQNYDCILYISCNPHTLCDNLVELSKTHRIEKAALFDQFPYTDHMESGVWLIR 362 Query: 365 K 365 K Sbjct: 363 K 363 >gi|149192330|ref|ZP_01870537.1| tRNA (uracil-5-)-methyltransferase [Vibrio shilonii AK1] gi|148833841|gb|EDL50871.1| tRNA (uracil-5-)-methyltransferase [Vibrio shilonii AK1] Length = 369 Score = 423 bits (1088), Expect = e-116, Method: Composition-based stats. Identities = 196/363 (53%), Positives = 265/363 (73%), Gaps = 2/363 (0%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 + Y+ QL EK RL MM + P L++F S HYRMRAEF +WH+G+D+Y+IMF+ Sbjct: 6 FTPEGYQIQLEEKSQRLIDMMAPYSAPELEVFTSPEKHYRMRAEFRVWHEGEDMYYIMFN 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 Q+T+E+ R+D F S LIN LM +M ++ +LR KLFQ+D+L++ S + +V+L+YH Sbjct: 66 QETREKYRVDQFPAASRLINDLMPLLMDAMKGNDVLRKKLFQVDFLSTLSGEILVSLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 R LDDAW+ A L+ L+ +++ LIGRA K KI LD+DYV E L V G+ Y+Q+E Sbjct: 126 RQLDDAWKAEAKALKQRLNDEGFKLNLIGRARKMKIVLDQDYVLETLHVNGQPYHYQQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPN + MLEW + T+ +GDLLELYCGNGNFSL LA++F+RVLA E+AKPSV Sbjct: 186 NSFTQPNGPVAQKMLEWAVDCTQESKGDLLELYCGNGNFSLALAQNFERVLATELAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL--KDIDIHSYRFKTIFVDPPRS 302 ++A++NIA N ++NV+I+RMS++EFT+AM +REF RL +++D+ SY TIFVDPPR+ Sbjct: 246 DSAQFNIAENKIDNVQIIRMSAEEFTEAMEGKREFRRLQQQNVDLKSYNCNTIFVDPPRA 305 Query: 303 GLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362 G+D T MVQ Y ILYISCNP++L +L +LS THTI R ALFDQFP+T H+E GVLL Sbjct: 306 GMDIDTCKMVQGYQRILYISCNPETLKDNLDVLSETHTITRFALFDQFPFTHHIEAGVLL 365 Query: 363 VRK 365 RK Sbjct: 366 ERK 368 >gi|157377468|ref|YP_001476068.1| tRNA (uracil-5-)-methyltransferase [Shewanella sediminis HAW-EB3] gi|189036048|sp|A8G1G7|TRMA_SHESH RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|157319842|gb|ABV38940.1| tRNA (uracil-5-)-methyltransferase [Shewanella sediminis HAW-EB3] Length = 365 Score = 423 bits (1088), Expect = e-116, Method: Composition-based stats. Identities = 195/363 (53%), Positives = 259/363 (71%), Gaps = 1/363 (0%) Query: 3 GTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIM 62 + + Y+ QL EK +L Q+ F P L++F SEP HYRMRAEF IWHDG+D+Y+ M Sbjct: 4 AAMDPNTYDAQLEEKRIKLEQIFTDFDTPKLEVFSSEPAHYRMRAEFRIWHDGEDMYYYM 63 Query: 63 FDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122 FD+ ++R D F+P S LIN +M +M +R P LR +LFQID+L++ S + +V+L+ Sbjct: 64 FDKALDSKVRCDQFLPASELINKVMPALMEELRPNPTLRHRLFQIDFLSTLSGEILVSLL 123 Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182 YH+ LD W A L++ L A + I +IGRA K K+ +D+D+V E LTV L Y Q Sbjct: 124 YHKQLDAQWEIEAKALKEKLAA-TFNINIIGRARKQKLIIDKDFVIESLTVNNEQLQYHQ 182 Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 IENSFTQPN ++V MLEW + TK QGDLLELYCGNGNFS+ LA++FDRVLA E+AKP Sbjct: 183 IENSFTQPNGKVSVKMLEWAIDVTKNSQGDLLELYCGNGNFSIALAQNFDRVLATELAKP 242 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302 SVE+A+YNI N ++N++I+RMS+++FT AM ++R F RL+ ID+ SY TIFVDPPR+ Sbjct: 243 SVESAQYNIKINKIDNLQIIRMSAEDFTDAMAKKRTFRRLEGIDLDSYNCNTIFVDPPRA 302 Query: 303 GLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362 G+D TV +VQ Y I+YISCNP++L +L+ LS TH I R ALFDQFPYT HME GV L Sbjct: 303 GMDPDTVKLVQGYDRIVYISCNPNTLIDNLAELSKTHKITRFALFDQFPYTDHMESGVFL 362 Query: 363 VRK 365 R+ Sbjct: 363 ERR 365 >gi|145632206|ref|ZP_01787941.1| tRNA (uracil-5-)-methyltransferase [Haemophilus influenzae 3655] gi|145634738|ref|ZP_01790446.1| tRNA (uracil-5-)-methyltransferase [Haemophilus influenzae PittAA] gi|144987113|gb|EDJ93643.1| tRNA (uracil-5-)-methyltransferase [Haemophilus influenzae 3655] gi|145267904|gb|EDK07900.1| tRNA (uracil-5-)-methyltransferase [Haemophilus influenzae PittAA] Length = 363 Score = 423 bits (1087), Expect = e-116, Method: Composition-based stats. Identities = 202/361 (55%), Positives = 263/361 (72%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L I QY + L +K+++L ++ F P++Q+F S HYRMRAEF IWH+ D YHIMFD Sbjct: 3 LPISQYNELLQKKLEKLTALLHPFNAPDIQVFDSPTSHYRMRAEFRIWHEQSDFYHIMFD 62 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 Q T +R R+D F S LIN +M ++ ++ + +L KLFQIDYL++ S++ IV+L+YH Sbjct: 63 QATLQRYRVDEFPIASTLINRMMQILLPLLKQQEVLHKKLFQIDYLSTLSNKIIVSLLYH 122 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + L + W A L+D L + + +Q+IGRA+K KIC ++DYVDE L V GR +YRQ+E Sbjct: 123 KTLTEEWESAAKNLKDLLEKQDFDVQIIGRASKQKICFEQDYVDEVLPVNGRNYVYRQVE 182 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N MLEW + T+ +GDLLELYCGNGNFS+ LA++F +VLA EIAKPSV Sbjct: 183 NSFTQPNATVNCKMLEWAIDCTQNSEGDLLELYCGNGNFSIALAQNFRKVLATEIAKPSV 242 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA++NIA N V+N++I+RMS++EFTQAM R FNRLK ID+ SY TIFVDPPR+GL Sbjct: 243 AAAQFNIAENKVDNLQIIRMSAEEFTQAMNGVRAFNRLKGIDLKSYECNTIFVDPPRAGL 302 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D TV +VQ Y ILYISCNP + C +L LS TH IE+ ALFDQFPYT HME GV L+R Sbjct: 303 DPDTVKLVQNYDRILYISCNPHTQCDNLVELSKTHRIEKAALFDQFPYTDHMESGVWLIR 362 Query: 365 K 365 K Sbjct: 363 K 363 >gi|145636589|ref|ZP_01792256.1| tRNA (uracil-5-)-methyltransferase [Haemophilus influenzae PittHH] gi|145270115|gb|EDK10051.1| tRNA (uracil-5-)-methyltransferase [Haemophilus influenzae PittHH] Length = 363 Score = 423 bits (1087), Expect = e-116, Method: Composition-based stats. Identities = 202/361 (55%), Positives = 265/361 (73%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L I QY + L +K+++L ++ F P++Q+F S HYRMRAEF IWH+ DD YHIMFD Sbjct: 3 LPISQYNELLQKKLEKLTALLHPFNAPDIQVFDSPTSHYRMRAEFRIWHEQDDFYHIMFD 62 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 Q T +R R+D F S+LIN +M ++ ++ + +L KLFQIDYL++ S++ IV+L+YH Sbjct: 63 QATLQRYRVDEFPIASMLINRMMQTLLPLLKQQEVLHKKLFQIDYLSTLSNKIIVSLLYH 122 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + L + W A L+D L + + +Q+IGRA+K KIC ++DYVDE L V GR +YRQ+E Sbjct: 123 KTLAEEWESAAKNLKDLLEKQGFNVQIIGRASKQKICFEQDYVDEVLPVNGRNYVYRQVE 182 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N MLEW + T+ +GDLLELYCGNGNFS+ LA++F +VLA EIAKPSV Sbjct: 183 NSFTQPNATVNCKMLEWAIDCTQNSEGDLLELYCGNGNFSIALAQNFRKVLATEIAKPSV 242 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA++NIA N V+N++I+RMS++EFTQAM R FNRLK ID+ SY TIFVDPPR+GL Sbjct: 243 AAAQFNIAENKVDNLQIIRMSAEEFTQAMNGVRAFNRLKGIDLKSYECNTIFVDPPRAGL 302 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D TV +VQ Y ILYISCNP + C +L LS TH IE+ ALFDQFPYT HME G+ L+R Sbjct: 303 DPDTVKLVQNYDRILYISCNPHTQCDNLVELSKTHRIEKAALFDQFPYTDHMESGLWLIR 362 Query: 365 K 365 K Sbjct: 363 K 363 >gi|152978112|ref|YP_001343741.1| tRNA (uracil-5-)-methyltransferase [Actinobacillus succinogenes 130Z] gi|171472956|sp|A6VLF9|TRMA_ACTSZ RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|150839835|gb|ABR73806.1| tRNA (uracil-5-)-methyltransferase [Actinobacillus succinogenes 130Z] Length = 369 Score = 422 bits (1086), Expect = e-116, Method: Composition-based stats. Identities = 207/366 (56%), Positives = 268/366 (73%), Gaps = 5/366 (1%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHD-----GDDLY 59 L I++Y++ LAEK +L ++ F P L +F S H+RMRAEF +WHD G +LY Sbjct: 4 LPIEKYDELLAEKCRKLTALLAPFDAPALTVFPSPTQHFRMRAEFRLWHDYSENRGGNLY 63 Query: 60 HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119 HIMFD+ TK+R R+D F S LIN +M ++ ++ + +L KLFQIDYL++ S+Q IV Sbjct: 64 HIMFDKTTKQRYRVDQFPVASQLINRMMATILPLLKEQDVLSRKLFQIDYLSTLSEQIIV 123 Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179 +L+YH+ L D W+E A L+ L + +Q+IGRA K KICLD+D+VDE L+V + + Sbjct: 124 SLLYHKTLTDEWQEAAQALKVRLRNLGFSVQIIGRATKQKICLDQDFVDEELSVGDKKYV 183 Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEI 239 YRQ+ENSFTQPNA +N MLEW + T+ QGDLLELYCGNGNFS+ LA++F +VLA EI Sbjct: 184 YRQVENSFTQPNAALNCKMLEWAIDCTRDSQGDLLELYCGNGNFSIALAQNFRKVLATEI 243 Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299 AKPSV AA++NIAAN V+N++I+RMS++EFTQA+ R FNRLK ID+ +Y TIFVDP Sbjct: 244 AKPSVAAAQFNIAANQVDNLQIIRMSAEEFTQAVNGVRAFNRLKGIDLQAYECHTIFVDP 303 Query: 300 PRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359 PR+GLD TV +VQ Y ILYISCNP +LC +L ILS TH IER ALFDQFPYT HME G Sbjct: 304 PRAGLDSDTVKLVQKYDRILYISCNPQTLCENLQILSQTHRIERAALFDQFPYTEHMEAG 363 Query: 360 VLLVRK 365 V L+RK Sbjct: 364 VWLMRK 369 >gi|127511072|ref|YP_001092269.1| tRNA (uracil-5-)-methyltransferase [Shewanella loihica PV-4] gi|171855240|sp|A3Q962|TRMA_SHELP RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|126636367|gb|ABO22010.1| tRNA (uracil-5-)-methyltransferase [Shewanella loihica PV-4] Length = 365 Score = 422 bits (1086), Expect = e-116, Method: Composition-based stats. Identities = 191/362 (52%), Positives = 270/362 (74%), Gaps = 1/362 (0%) Query: 4 TLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63 + QY+ QL K +L Q+ + F+ P L++F S+ HYRMRAEF +WH+G+DLY+ MF Sbjct: 5 AMDPQQYDAQLDVKRQKLAQLFVDFETPELEVFASQKAHYRMRAEFRVWHEGEDLYYYMF 64 Query: 64 DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIY 123 D+ +++R + F+P S LIN +M E+MA +R P+LR KLFQ+D+L++ S + +V+L+Y Sbjct: 65 DKAQNQKIRCEQFLPASQLINDMMPELMAALRPNPVLRHKLFQVDFLSTLSGEILVSLLY 124 Query: 124 HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQI 183 H+ LD W+E A L++AL + K+++ +IGRA K K+ +DRD+V E L V G+ L Y+Q+ Sbjct: 125 HKQLDAQWQEEAQALKEALSS-KFKVDIIGRARKQKLVMDRDFVIESLPVNGKQLTYKQV 183 Query: 184 ENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 ENSFTQPN + + MLEW + T+ GDLLELYCGNGNFS+ LA++F+RVLA E+AKPS Sbjct: 184 ENSFTQPNGEVAIKMLEWAIDITRDSSGDLLELYCGNGNFSIALAQNFNRVLATELAKPS 243 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 V++A+YNI AN ++N++I+RMS+++FT A+ ++R F RL+ +D+ SY TIFVDPPR+G Sbjct: 244 VDSAQYNIEANQIDNLQIIRMSAEDFTDALAKKRSFRRLEGVDLDSYDCNTIFVDPPRAG 303 Query: 304 LDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363 LDD T+ MVQ Y ILYISCNP++L +L +L TH I R ALFDQFPYT HME GVLL Sbjct: 304 LDDNTLSMVQGYERILYISCNPNTLLDNLKVLDKTHKITRFALFDQFPYTDHMESGVLLE 363 Query: 364 RK 365 R+ Sbjct: 364 RR 365 >gi|322515262|ref|ZP_08068260.1| tRNA (uracil-5-)-methyltransferase [Actinobacillus ureae ATCC 25976] gi|322118767|gb|EFX90973.1| tRNA (uracil-5-)-methyltransferase [Actinobacillus ureae ATCC 25976] Length = 368 Score = 422 bits (1086), Expect = e-116, Method: Composition-based stats. Identities = 199/367 (54%), Positives = 263/367 (71%), Gaps = 5/367 (1%) Query: 4 TLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHD-----GDDL 58 L I+QY LA+K + L +++ F P L++F+SE H+RMRAEF +WHD ++L Sbjct: 2 NLPIEQYSDLLAKKAENLTALLVPFNPPALEVFQSETSHFRMRAEFRVWHDTNEAGENEL 61 Query: 59 YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAI 118 YHIMFDQ+TK+R R+D F + LIN +M ++ I+ LL KLFQ+DYL++ S + Sbjct: 62 YHIMFDQETKQRYRVDQFPIANHLINNMMSTLLTEIKGNELLTRKLFQVDYLSTLSGEIA 121 Query: 119 VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTL 178 V+++YH+ L++ W+ A L+ L + +Q+IGRA K KI L+RDYV+E L V G L Sbjct: 122 VSMLYHKKLNEEWQAEAAALKKRLENHGFNVQIIGRATKQKIALERDYVEEVLPVDGHNL 181 Query: 179 IYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVE 238 IYRQ+ENSFTQPNA +N+ MLEW + T+ GDLLELYCGNGNFS+ LA +F +VLA E Sbjct: 182 IYRQVENSFTQPNAKMNIKMLEWARSCTQNSTGDLLELYCGNGNFSIALAENFRQVLATE 241 Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298 I+K SV +A+YNI N +NN++I+RMS++EFTQAM REFNRLK ID+ +Y TIFVD Sbjct: 242 ISKSSVHSAQYNIEQNRINNLQIIRMSAEEFTQAMNGVREFNRLKGIDLKAYDCNTIFVD 301 Query: 299 PPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMEC 358 PPR+GLD T+ MVQAY ILYISCNP +L +L L+ TH IER ALFDQFPYT H+E Sbjct: 302 PPRAGLDQDTLNMVQAYERILYISCNPHTLADNLQQLTQTHRIERAALFDQFPYTHHVES 361 Query: 359 GVLLVRK 365 GV L+RK Sbjct: 362 GVWLIRK 368 >gi|332142722|ref|YP_004428460.1| tRNA (uracil-5-)-methyltransferase [Alteromonas macleodii str. 'Deep ecotype'] gi|332142856|ref|YP_004428594.1| tRNA (uracil-5-)-methyltransferase [Alteromonas macleodii str. 'Deep ecotype'] gi|327552744|gb|AEA99462.1| tRNA (uracil-5-)-methyltransferase [Alteromonas macleodii str. 'Deep ecotype'] gi|327552878|gb|AEA99596.1| tRNA (uracil-5-)-methyltransferase [Alteromonas macleodii str. 'Deep ecotype'] Length = 365 Score = 422 bits (1085), Expect = e-116, Method: Composition-based stats. Identities = 189/357 (52%), Positives = 258/357 (72%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTK 68 +Y+ QL EKVDRL ++ F P ++ S+P HYRMRAEF +WH+GDDL+HIMFDQ+TK Sbjct: 8 RYQAQLDEKVDRLSALLSPFNAPKTSVYPSQPTHYRMRAEFRVWHEGDDLFHIMFDQETK 67 Query: 69 ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLD 128 E+ R+D F P IN M +++ IR +LR KLFQIDYL++ S + +++L+YHR LD Sbjct: 68 EKYRVDSFPPACKTINDAMEKLLNEIRPNEILRKKLFQIDYLSALSGELVISLLYHRQLD 127 Query: 129 DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFT 188 D W A L+ L ++ +IGRA K K +D D+V ERL V G +++ IENSFT Sbjct: 128 DEWEAAAKSLKSTLETHFPKVNIIGRARKQKRIIDNDFVIERLPVKGNEFVFKHIENSFT 187 Query: 189 QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248 QPNA +N M+EW L K + GDLLE+YCG GNFSL LA HFD V+ EIAKPSV+AA+ Sbjct: 188 QPNAEVNCKMIEWALDCVKPLSGDLLEMYCGAGNFSLPLALHFDNVVGTEIAKPSVQAAQ 247 Query: 249 YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDAT 308 +NI N ++NVKIVR++++EFTQAM+ +R F+RL+ ID+ Y F T+ VDPPR+GLD+ + Sbjct: 248 FNIEQNRLHNVKIVRLAAEEFTQAMKGKRTFSRLEGIDLSEYNFTTVLVDPPRAGLDEDS 307 Query: 309 VGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 + M+Q Y +I+YISCNP++L ++L +LS TH + + ALFDQFP+T H+E GVLL RK Sbjct: 308 LRMIQDYDNIVYISCNPETLAQNLELLSETHDVAQSALFDQFPFTHHIEAGVLLTRK 364 >gi|262827630|sp|B4RYR7|TRMA_ALTMD RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT Length = 369 Score = 422 bits (1085), Expect = e-116, Method: Composition-based stats. Identities = 189/357 (52%), Positives = 258/357 (72%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTK 68 +Y+ QL EKVDRL ++ F P ++ S+P HYRMRAEF +WH+GDDL+HIMFDQ+TK Sbjct: 12 RYQAQLDEKVDRLSALLSPFNAPKTSVYPSQPTHYRMRAEFRVWHEGDDLFHIMFDQETK 71 Query: 69 ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLD 128 E+ R+D F P IN M +++ IR +LR KLFQIDYL++ S + +++L+YHR LD Sbjct: 72 EKYRVDSFPPACKTINDAMEKLLNEIRPNEILRKKLFQIDYLSALSGELVISLLYHRQLD 131 Query: 129 DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFT 188 D W A L+ L ++ +IGRA K K +D D+V ERL V G +++ IENSFT Sbjct: 132 DEWEAAAKSLKSTLETHFPKVNIIGRARKQKRIIDNDFVIERLPVKGNEFVFKHIENSFT 191 Query: 189 QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248 QPNA +N M+EW L K + GDLLE+YCG GNFSL LA HFD V+ EIAKPSV+AA+ Sbjct: 192 QPNAEVNCKMIEWALDCVKPLSGDLLEMYCGAGNFSLPLALHFDNVVGTEIAKPSVQAAQ 251 Query: 249 YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDAT 308 +NI N ++NVKIVR++++EFTQAM+ +R F+RL+ ID+ Y F T+ VDPPR+GLD+ + Sbjct: 252 FNIEQNRLHNVKIVRLAAEEFTQAMKGKRTFSRLEGIDLSEYNFTTVLVDPPRAGLDEDS 311 Query: 309 VGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 + M+Q Y +I+YISCNP++L ++L +LS TH + + ALFDQFP+T H+E GVLL RK Sbjct: 312 LRMIQDYDNIVYISCNPETLAQNLELLSETHDVAQSALFDQFPFTHHIEAGVLLTRK 368 >gi|145638350|ref|ZP_01793960.1| tRNA (uracil-5-)-methyltransferase [Haemophilus influenzae PittII] gi|145272679|gb|EDK12586.1| tRNA (uracil-5-)-methyltransferase [Haemophilus influenzae PittII] gi|309751491|gb|ADO81475.1| tRNA m(5)U54 methyltransferase [Haemophilus influenzae R2866] Length = 363 Score = 422 bits (1085), Expect = e-116, Method: Composition-based stats. Identities = 202/361 (55%), Positives = 265/361 (73%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L I QY + L +K+++L ++ F P++Q+F S HYRMRAEF IWH+ DD YHIMFD Sbjct: 3 LPISQYNELLQKKLEKLTALLHPFNAPDIQVFDSPTSHYRMRAEFRIWHEQDDFYHIMFD 62 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 Q T +R R+D F S+LIN +M ++ ++ + +L KLFQIDYL++ S++ IV+L+YH Sbjct: 63 QATLKRYRVDEFPIASMLINRMMQTLLPLLKQQEVLHKKLFQIDYLSTLSNKIIVSLLYH 122 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + L + W A L+D L + + +Q+IGRA+K KIC ++DYVDE L V GR +YRQ+E Sbjct: 123 KTLTEEWESAAKNLKDLLEKQDFDVQIIGRASKQKICFEQDYVDEVLPVNGRNYVYRQVE 182 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N MLEW + T+ +GDLLELYCGNGNFS+ LA++F +VLA EIAKPSV Sbjct: 183 NSFTQPNATVNCKMLEWAIDCTQNSEGDLLELYCGNGNFSIALAQNFRKVLATEIAKPSV 242 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA++NIA N V+N++I+RMS++EFTQAM R FNRLK ID+ SY TIFVDPPR+GL Sbjct: 243 AAAQFNIAENKVDNLQIIRMSAEEFTQAMNGVRAFNRLKGIDLKSYECNTIFVDPPRAGL 302 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D TV +VQ Y ILYISCNP + C +L LS TH IE+ ALFDQFPYT HME G+ L+R Sbjct: 303 DPDTVKLVQNYDRILYISCNPHTQCDNLVELSKTHRIEKAALFDQFPYTDHMESGLWLIR 362 Query: 365 K 365 K Sbjct: 363 K 363 >gi|145628253|ref|ZP_01784054.1| tRNA (uracil-5-)-methyltransferase [Haemophilus influenzae 22.1-21] gi|144980028|gb|EDJ89687.1| tRNA (uracil-5-)-methyltransferase [Haemophilus influenzae 22.1-21] Length = 363 Score = 421 bits (1083), Expect = e-116, Method: Composition-based stats. Identities = 202/361 (55%), Positives = 265/361 (73%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L I QY + L +K+++L ++ F P++Q+F S HYRMRAEF IWH+ DD YHIMFD Sbjct: 3 LPISQYNELLQKKLEKLTALLHPFNAPDIQVFNSPTSHYRMRAEFRIWHEQDDFYHIMFD 62 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 Q T +R R+D F S+LIN +M ++ ++ + +L KLFQIDYL++ S++ IV+L+YH Sbjct: 63 QATLKRYRVDEFPIASMLINRMMQTLLPLLKQQEVLHKKLFQIDYLSTLSNKIIVSLLYH 122 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + L + W A L+D L + + +Q+IGRA+K KIC ++DYVDE L V GR +YRQ+E Sbjct: 123 KTLTEEWESAAKNLKDLLEKQDFDVQIIGRASKQKICFEQDYVDEVLPVNGRNYVYRQVE 182 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N MLEW + T+ +GDLLELYCGNGNFS+ LA++F +VLA EIAKPSV Sbjct: 183 NSFTQPNATVNCKMLEWAIDCTQNSEGDLLELYCGNGNFSIALAQNFRKVLATEIAKPSV 242 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA++NIA N V+N++I+RMS++EFTQAM R FNRLK ID+ SY TIFVDPPR+GL Sbjct: 243 AAAQFNIAENKVDNLQIIRMSAEEFTQAMNGVRAFNRLKGIDLKSYECNTIFVDPPRAGL 302 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D TV +VQ Y ILYISCNP + C +L LS TH IE+ ALFDQFPYT HME G+ L+R Sbjct: 303 DPDTVKLVQNYDRILYISCNPHTQCDNLVELSKTHRIEKAALFDQFPYTDHMESGLWLIR 362 Query: 365 K 365 K Sbjct: 363 K 363 >gi|297581790|ref|ZP_06943711.1| tRNA (uracil-5-)-methyltransferase [Vibrio cholerae RC385] gi|297533884|gb|EFH72724.1| tRNA (uracil-5-)-methyltransferase [Vibrio cholerae RC385] Length = 369 Score = 421 bits (1083), Expect = e-116, Method: Composition-based stats. Identities = 201/360 (55%), Positives = 267/360 (74%), Gaps = 2/360 (0%) Query: 7 IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66 + Y+ QLA+K+ RL+ M + + +P L++F S +YRMRAEF IWH+GDD+Y+IMF+Q+ Sbjct: 8 PELYQAQLADKIARLKAMFVDYSMPELEVFESPVANYRMRAEFRIWHEGDDMYYIMFNQE 67 Query: 67 TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL 126 T+E+ R+D F S LIN LM +M ++ P+LR KLFQ+D+L++ S + +V+L+YHR Sbjct: 68 TREKYRVDQFPAASRLINDLMPLLMDAMKGSPILRHKLFQVDFLSTLSGEILVSLLYHRQ 127 Query: 127 LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS 186 L + W A L+ L+ + + LIGRA K K+ LDRDYV E+L V G+ +Y+Q+ENS Sbjct: 128 LSEEWITAAQALKQRLNDEGFNLNLIGRARKMKVVLDRDYVVEKLQVNGQPYVYKQVENS 187 Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246 FTQPNA + MLEW + T+ +GDLLELYCGNGNFSL LA++F+RVLA E+AKPSVEA Sbjct: 188 FTQPNAKVAEKMLEWAVDCTQESKGDLLELYCGNGNFSLALAQNFERVLATELAKPSVEA 247 Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGL 304 A++NIAAN + NV+I+RMS++EFTQAM +REFNRLKD +D+ SYR TIFVDPPRSG+ Sbjct: 248 AQFNIAANQIGNVQIIRMSAEEFTQAMEGKREFNRLKDAGVDLQSYRCNTIFVDPPRSGM 307 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D T MVQ Y ILYISCNP++L +L +L TH + R ALFDQFPY HME GVLL R Sbjct: 308 DIDTCKMVQGYERILYISCNPETLQENLQVLGETHQVVRFALFDQFPYAHHMEAGVLLER 367 >gi|319897658|ref|YP_004135855.1| tRNA (uracil-5-)-methyltransferase [Haemophilus influenzae F3031] gi|317433164|emb|CBY81538.1| tRNA (uracil-5-)-methyltransferase [Haemophilus influenzae F3031] Length = 363 Score = 421 bits (1083), Expect = e-116, Method: Composition-based stats. Identities = 203/361 (56%), Positives = 265/361 (73%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L I QY + L +K+++L ++ F P++Q+F S HYRMRAEF IWH+ DD YHIMFD Sbjct: 3 LPIFQYNELLQKKLEKLTALLRPFNAPDIQVFDSPTNHYRMRAEFRIWHEQDDFYHIMFD 62 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 Q T +R R+D F S+LIN +M ++ ++ + +L KLFQIDYL++ S++ IV+L+YH Sbjct: 63 QATLQRYRVDEFPIASMLINRMMQTLLPLLKQQEVLHKKLFQIDYLSTLSNKIIVSLLYH 122 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + L + W A L+D L + + +Q+IGRA+K KIC ++DYVDE L V GR +YRQ+E Sbjct: 123 KTLTEEWESAAKNLKDLLEKQDFDVQIIGRASKQKICFEQDYVDEVLPVNGRNYVYRQVE 182 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N MLEW + T+ +GDLLELYCGNGNFS+ LA++F +VLA EIAKPSV Sbjct: 183 NSFTQPNATVNCKMLEWAIDCTQNSEGDLLELYCGNGNFSIALAQNFRKVLATEIAKPSV 242 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA++NIA N V+N++I+RMS++EFTQAM R FNRLK ID+ SY TIFVDPPR+GL Sbjct: 243 AAAQFNIAENKVDNLQIIRMSAEEFTQAMNGVRAFNRLKGIDLKSYECNTIFVDPPRAGL 302 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D TV +VQ Y ILYISCNP + C +L LS TH IE+ ALFDQFPYT HME GV L+R Sbjct: 303 DPDTVKLVQNYDRILYISCNPHTQCDNLVELSKTHRIEKAALFDQFPYTDHMESGVWLIR 362 Query: 365 K 365 K Sbjct: 363 K 363 >gi|88861402|ref|ZP_01136031.1| tRNA (Uracil-5-)-methyltransferase (tRNA(M-5-U54)-methyltransferase) (RUMT) [Pseudoalteromonas tunicata D2] gi|88816577|gb|EAR26403.1| tRNA (Uracil-5-)-methyltransferase (tRNA(M-5-U54)-methyltransferase) (RUMT) [Pseudoalteromonas tunicata D2] Length = 365 Score = 420 bits (1081), Expect = e-115, Method: Composition-based stats. Identities = 194/356 (54%), Positives = 263/356 (73%), Gaps = 1/356 (0%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69 YEQQL EK + F V +L++F SE HYR RAEF +WHDG+DL+HIMFDQQ+KE Sbjct: 11 YEQQLNEKKHTIAAQFARFGVNDLEVFASEEKHYRQRAEFRVWHDGEDLFHIMFDQQSKE 70 Query: 70 RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDD 129 ++R++ F P + LI ALM ++A ++ + +LR KLFQIDYL++ S + +V+++YH+ LDD Sbjct: 71 KIRVEQFDPAAPLIFALMPRLIAELKTKEVLRRKLFQIDYLSTLSGEILVSMLYHKALDD 130 Query: 130 AWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQ 189 W L++ L + I IGRA K KI L ++YV E+LTVAG+ L+Y+Q+ENSFTQ Sbjct: 131 EWLTAIKELKNKLSGE-FNIDFIGRARKQKIALGKEYVVEKLTVAGKQLVYQQVENSFTQ 189 Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249 PNA +N MLEW L ++ + DLLELYCGNGNFS+ LA F+RVLA EI+K SV +A++ Sbjct: 190 PNAKVNQKMLEWALDISQNLSNDLLELYCGNGNFSIALAPAFNRVLATEISKSSVASAQF 249 Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309 NIA N + N+ I+RMSS+EFT+AM+ E+EF+RLK ID+ SY ++I VDPPR+GLD+ T Sbjct: 250 NIAENKITNLDIIRMSSEEFTEAMKGEKEFSRLKGIDLKSYNCQSILVDPPRAGLDEGTT 309 Query: 310 GMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 +VQ Y +I+YISCNP +L RDL +L+ TH +ER A+FDQFPYT H+E GV L RK Sbjct: 310 RLVQNYDNIIYISCNPQTLERDLEVLTQTHKVERFAIFDQFPYTHHIESGVFLTRK 365 >gi|153831375|ref|ZP_01984042.1| tRNA (uracil-5-)-methyltransferase [Vibrio cholerae 623-39] gi|148873143|gb|EDL71278.1| tRNA (uracil-5-)-methyltransferase [Vibrio cholerae 623-39] Length = 355 Score = 420 bits (1081), Expect = e-115, Method: Composition-based stats. Identities = 200/355 (56%), Positives = 265/355 (74%), Gaps = 2/355 (0%) Query: 14 LAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRI 73 LA+K+ RL+ M + + +P L++F S +YRMRAEF IWH+GDD+Y+IMF+Q+T+E+ R+ Sbjct: 1 LADKIARLKAMFVDYSMPELEVFESPVANYRMRAEFRIWHEGDDMYYIMFNQETREKYRV 60 Query: 74 DYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRE 133 D F S LIN LM +M ++ P+LR KLFQ+D+L++ S + +V+L+YHR L + W Sbjct: 61 DQFPAASRLINDLMPLLMDAMKGSPILRHKLFQVDFLSTLSGEILVSLLYHRQLSEEWIT 120 Query: 134 CAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAG 193 A L+ L+ + + LIGRA K K+ LDRDYV E+L V G+ +Y+Q+ENSFTQPNA Sbjct: 121 AAQALKQRLNDEGFNLNLIGRARKMKVVLDRDYVVEKLQVNGQPYVYKQVENSFTQPNAK 180 Query: 194 INVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAA 253 + MLEW + T+ +GDLLELYCGNGNFSL LA++F+RVLA E+AKPSVEAA++NIAA Sbjct: 181 VAEKMLEWAVDCTQESKGDLLELYCGNGNFSLALAQNFERVLATELAKPSVEAAQFNIAA 240 Query: 254 NHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGLDDATVGM 311 N + NV+I+RMS++EFTQAM +REFNRLKD +D+ SYR TIFVDPPRSG+D T M Sbjct: 241 NQIGNVQIIRMSAEEFTQAMEGKREFNRLKDAGVDLQSYRCNTIFVDPPRSGMDIDTCKM 300 Query: 312 VQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRKP 366 VQ Y ILYISCNP++L +L +L TH + R ALFDQFPYT HME GV+L RK Sbjct: 301 VQGYERILYISCNPETLKENLQVLGETHQVVRFALFDQFPYTHHMEAGVMLERKK 355 >gi|120600466|ref|YP_965040.1| tRNA (uracil-5-)-methyltransferase [Shewanella sp. W3-18-1] gi|262827710|sp|A1RP91|TRMA_SHESW RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|120560559|gb|ABM26486.1| tRNA (uracil-5-)-methyltransferase [Shewanella sp. W3-18-1] Length = 365 Score = 420 bits (1080), Expect = e-115, Method: Composition-based stats. Identities = 193/363 (53%), Positives = 264/363 (72%), Gaps = 1/363 (0%) Query: 3 GTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIM 62 + Y+ QL K +L Q F+ P++++F SEP +YRMRAEF +WHDGDDLY+ M Sbjct: 4 AAMDPQTYDAQLEHKRIKLEQAFAQFETPSVEVFASEPANYRMRAEFRMWHDGDDLYYYM 63 Query: 63 FDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122 FD+ E++R D ++P S+LIN +M ++A ++ P LR KLFQ+D+L++ S + +V+L+ Sbjct: 64 FDKVLNEKVRCDQYLPASVLINQMMSALIAELKPNPSLRHKLFQVDFLSTLSGEILVSLL 123 Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182 YHR LDD WR A L+ L ++ + + +IGRA K KI LD+D+V E L V +T +Y+Q Sbjct: 124 YHRQLDDQWRTNAAALKAKLSSQ-FNVNIIGRARKQKIDLDKDFVVESLQVNDKTFLYKQ 182 Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 IENSFTQPNA + V MLEW + T+ QGDLLELYCGNGNFS+ LA++F+RVLA E+AKP Sbjct: 183 IENSFTQPNAKVAVKMLEWAIDVTQDSQGDLLELYCGNGNFSIALAQNFNRVLATELAKP 242 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302 SVEAA+YNI AN + N++I+RMS+++F+ AM ++R F RL+ ID+ SY TIFVDPPR+ Sbjct: 243 SVEAAQYNIEANGIKNLQIIRMSAEDFSDAMAKKRSFRRLEGIDLDSYVCNTIFVDPPRA 302 Query: 303 GLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362 G+D T+ +VQ Y ILYISCNPD+L +L L TH + + ALFDQFPYT HME GVLL Sbjct: 303 GIDPDTLALVQGYERILYISCNPDTLKDNLEQLYKTHRVTQFALFDQFPYTDHMETGVLL 362 Query: 363 VRK 365 R+ Sbjct: 363 ERR 365 >gi|258626050|ref|ZP_05720905.1| tRNA (uracil-5-)-methyltransferase [Vibrio mimicus VM603] gi|258581670|gb|EEW06564.1| tRNA (uracil-5-)-methyltransferase [Vibrio mimicus VM603] Length = 369 Score = 420 bits (1079), Expect = e-115, Method: Composition-based stats. Identities = 200/359 (55%), Positives = 267/359 (74%), Gaps = 2/359 (0%) Query: 7 IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66 + Y+ QLA+K+ RL+ M + + +P L++F S +YRMRAEF IWH+GDD+Y+IMF+Q+ Sbjct: 8 PELYQAQLADKIARLKAMFVNYSMPELEVFESPVANYRMRAEFRIWHEGDDMYYIMFNQE 67 Query: 67 TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL 126 T+E+ R+D F S LIN LM +M ++ +LR KLFQ+D+L++ S + +V+L+YHR Sbjct: 68 TREKYRVDQFPAASRLINDLMPLLMDAMKGSHILRHKLFQVDFLSTLSGEVLVSLLYHRQ 127 Query: 127 LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS 186 L++ W A L+ L+ + + LIGRA K K+ LDRDYV E+L V G+ +Y+Q+ENS Sbjct: 128 LNEEWITAAQALKQRLNDEGFNLNLIGRARKMKVVLDRDYVVEKLQVNGQPYVYKQVENS 187 Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246 FTQPNA + MLEW + T+ GDLLELYCGNGNFSL LA++FDRVLA E+AKPSVEA Sbjct: 188 FTQPNAKVAEKMLEWAVDCTQDSNGDLLELYCGNGNFSLALAQNFDRVLATELAKPSVEA 247 Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGL 304 A++NIAAN ++NV+I+RMS++EFTQAM +REFNRLKD +++ SYR TIFVDPPRSG+ Sbjct: 248 AQFNIAANQIDNVQIIRMSAEEFTQAMEGKREFNRLKDAGVNLQSYRCNTIFVDPPRSGM 307 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363 D T MVQ Y ILYISCNP++L +L +L TH + R ALFDQFPYT HME GVLL Sbjct: 308 DIDTCKMVQGYERILYISCNPETLQENLQVLGETHQVVRFALFDQFPYTHHMEAGVLLE 366 >gi|304412674|ref|ZP_07394278.1| tRNA (uracil-5-)-methyltransferase [Shewanella baltica OS183] gi|307307284|ref|ZP_07587021.1| tRNA (uracil-5-)-methyltransferase [Shewanella baltica BA175] gi|304349018|gb|EFM13432.1| tRNA (uracil-5-)-methyltransferase [Shewanella baltica OS183] gi|306910339|gb|EFN40771.1| tRNA (uracil-5-)-methyltransferase [Shewanella baltica BA175] gi|315265533|gb|ADT92386.1| tRNA (uracil-5-)-methyltransferase [Shewanella baltica OS678] Length = 383 Score = 420 bits (1079), Expect = e-115, Method: Composition-based stats. Identities = 192/363 (52%), Positives = 266/363 (73%), Gaps = 1/363 (0%) Query: 3 GTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIM 62 + Y+ QL K +L Q F+ P++++F SEP +YRMRAEF +WHDGDDLY+ M Sbjct: 22 AAMDPQTYDTQLEHKRIKLEQAFAQFETPSVEVFASEPANYRMRAEFRMWHDGDDLYYYM 81 Query: 63 FDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122 FD+ E++R D ++P S+LIN +M ++A ++ P LR KLFQ+D+L++ S + +V+L+ Sbjct: 82 FDKVLNEKVRCDQYLPASVLINQMMSALIAELKPNPSLRHKLFQVDFLSTLSGEILVSLL 141 Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182 YHR LDD WR A L+ L ++ + + +IGRA K KI LD+D+V E L V +T +Y+Q Sbjct: 142 YHRQLDDQWRADATALKAKLSSQ-FNVNIIGRARKQKIDLDKDFVVESLQVNDKTFLYKQ 200 Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 IENSFTQPNA ++V MLEW + AT+ QGDLLELYCGNGNFS+ LA++F+RVLA E+AKP Sbjct: 201 IENSFTQPNAKVSVKMLEWAIDATQNSQGDLLELYCGNGNFSIALAQNFNRVLATELAKP 260 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302 SV+AA+YNI N + N++I+RMS+++F+ AM ++R F RL+ ID+ SY TIFVDPPR+ Sbjct: 261 SVDAAQYNIEVNGIENLQIIRMSAEDFSDAMAKKRSFRRLEGIDLDSYVCNTIFVDPPRA 320 Query: 303 GLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362 G+D T+ +VQ Y ILYISCNP++L +L L+ TH + R ALFDQFPYT HME GVLL Sbjct: 321 GIDPDTLALVQGYERILYISCNPETLKDNLQQLNETHKVTRFALFDQFPYTDHMETGVLL 380 Query: 363 VRK 365 R+ Sbjct: 381 ERR 383 >gi|170729029|ref|YP_001763055.1| tRNA (uracil-5-)-methyltransferase [Shewanella woodyi ATCC 51908] gi|226705993|sp|B1KN03|TRMA_SHEWM RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|169814376|gb|ACA88960.1| tRNA (uracil-5-)-methyltransferase [Shewanella woodyi ATCC 51908] Length = 365 Score = 419 bits (1078), Expect = e-115, Method: Composition-based stats. Identities = 194/363 (53%), Positives = 259/363 (71%), Gaps = 1/363 (0%) Query: 3 GTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIM 62 + + Y+ QL EK +L + F PNL++F SE HYRMRAEF IWHDG+D+Y+ M Sbjct: 4 AAMDPNTYDAQLEEKRIKLENIFTDFDTPNLEVFSSEQAHYRMRAEFRIWHDGEDMYYYM 63 Query: 63 FDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122 FD+ ++R D F+P S LIN +M ++A ++ PLLR +LFQID+L++ S + +V+L+ Sbjct: 64 FDKALNSKVRCDQFLPASKLINEMMPALIAELKPNPLLRHRLFQIDFLSTLSGEILVSLL 123 Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182 YH+ LD+ W A L++ L A K+ + +IGRA K K+ D+D+V E L V G L Y Q Sbjct: 124 YHKQLDEQWETEAKSLKERL-ASKFNVNIIGRARKQKLIFDKDFVVESLQVNGEQLQYHQ 182 Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 IENSFTQPN ++V MLEW + TK GDLLELYCGNGNFS+ LA++FDRVLA E+AKP Sbjct: 183 IENSFTQPNGKVSVKMLEWAIDVTKNSSGDLLELYCGNGNFSIALAQNFDRVLATELAKP 242 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302 SVE+A+YNI N ++N++I+RMS+++FT AM ++R F RL+ ID+ SY TIFVDPPR+ Sbjct: 243 SVESAQYNIKINKIDNLQIIRMSAEDFTDAMAKKRSFRRLEGIDLDSYNCNTIFVDPPRA 302 Query: 303 GLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362 G+D TV +VQ Y I+YISCNP++L +L LS TH I R ALFDQFPYT HME GV L Sbjct: 303 GMDPDTVKLVQGYERIVYISCNPNTLIDNLVELSKTHKITRFALFDQFPYTDHMESGVFL 362 Query: 363 VRK 365 RK Sbjct: 363 ERK 365 >gi|319775220|ref|YP_004137708.1| tRNA (uracil-5-)-methyltransferase [Haemophilus influenzae F3047] gi|317449811|emb|CBY86019.1| tRNA (uracil-5-)-methyltransferase [Haemophilus influenzae F3047] Length = 363 Score = 419 bits (1077), Expect = e-115, Method: Composition-based stats. Identities = 203/361 (56%), Positives = 265/361 (73%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L I QY + L +K+++L ++ F P++Q+F S HYRMRAEF IWH+ DD YHIMFD Sbjct: 3 LPIFQYNELLQKKLEKLTALLRPFNAPDIQVFDSPTNHYRMRAEFRIWHEQDDFYHIMFD 62 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 Q T +R R+D F S+LIN +M ++ ++ + +L KLFQIDYL++ S++ IV+L+YH Sbjct: 63 QATLQRYRVDEFPIASMLINRMMQTLLPLLKQQEVLHKKLFQIDYLSTLSNKIIVSLLYH 122 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + L + W A L+D L + + +Q+IGRA+K KIC ++DYVDE L V GR +YRQ+E Sbjct: 123 KTLTEEWESAAKNLKDLLEKQDFDVQIIGRASKQKICFEQDYVDEVLPVNGRNYVYRQVE 182 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N MLEW + T+ +GDLLELYCGNGNFS+ LA++F +VLA EIAKPSV Sbjct: 183 NSFTQPNATVNCKMLEWAIDCTQNSEGDLLELYCGNGNFSIALAQNFRKVLATEIAKPSV 242 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA++NIA N V+N++I+RMS++EFTQAM R FNRLK ID+ SY TIFVDPPR+GL Sbjct: 243 AAAQFNIAENKVDNLQIIRMSAEEFTQAMNGVRAFNRLKGIDLKSYECNTIFVDPPRAGL 302 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D TV +VQ Y ILYISCNP + C +L LS TH IE+ ALFDQFPYT HME GV L+R Sbjct: 303 DPDTVKLVQNYDRILYISCNPHTQCDNLVELSKTHCIEKAALFDQFPYTDHMESGVWLIR 362 Query: 365 K 365 K Sbjct: 363 K 363 >gi|126176363|ref|YP_001052512.1| tRNA (uracil-5-)-methyltransferase [Shewanella baltica OS155] gi|160873306|ref|YP_001552622.1| tRNA (uracil-5-)-methyltransferase [Shewanella baltica OS195] gi|217975221|ref|YP_002359972.1| tRNA (uracil-5-)-methyltransferase [Shewanella baltica OS223] gi|171769982|sp|A3DA80|TRMA_SHEB5 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|189036045|sp|A9KW82|TRMA_SHEB9 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|254789080|sp|B8EBM5|TRMA_SHEB2 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|125999568|gb|ABN63643.1| tRNA (uracil-5-)-methyltransferase [Shewanella baltica OS155] gi|160858828|gb|ABX47362.1| tRNA (uracil-5-)-methyltransferase [Shewanella baltica OS195] gi|217500356|gb|ACK48549.1| tRNA (uracil-5-)-methyltransferase [Shewanella baltica OS223] Length = 365 Score = 419 bits (1077), Expect = e-115, Method: Composition-based stats. Identities = 192/363 (52%), Positives = 266/363 (73%), Gaps = 1/363 (0%) Query: 3 GTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIM 62 + Y+ QL K +L Q F+ P++++F SEP +YRMRAEF +WHDGDDLY+ M Sbjct: 4 AAMDPQTYDTQLEHKRIKLEQAFAQFETPSVEVFASEPANYRMRAEFRMWHDGDDLYYYM 63 Query: 63 FDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122 FD+ E++R D ++P S+LIN +M ++A ++ P LR KLFQ+D+L++ S + +V+L+ Sbjct: 64 FDKVLNEKVRCDQYLPASVLINQMMSALIAELKPNPSLRHKLFQVDFLSTLSGEILVSLL 123 Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182 YHR LDD WR A L+ L ++ + + +IGRA K KI LD+D+V E L V +T +Y+Q Sbjct: 124 YHRQLDDQWRADATALKAKLSSQ-FNVNIIGRARKQKIDLDKDFVVESLQVNDKTFLYKQ 182 Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 IENSFTQPNA ++V MLEW + AT+ QGDLLELYCGNGNFS+ LA++F+RVLA E+AKP Sbjct: 183 IENSFTQPNAKVSVKMLEWAIDATQNSQGDLLELYCGNGNFSIALAQNFNRVLATELAKP 242 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302 SV+AA+YNI N + N++I+RMS+++F+ AM ++R F RL+ ID+ SY TIFVDPPR+ Sbjct: 243 SVDAAQYNIEVNGIENLQIIRMSAEDFSDAMAKKRSFRRLEGIDLDSYVCNTIFVDPPRA 302 Query: 303 GLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362 G+D T+ +VQ Y ILYISCNP++L +L L+ TH + R ALFDQFPYT HME GVLL Sbjct: 303 GIDPDTLALVQGYERILYISCNPETLKDNLQQLNETHKVTRFALFDQFPYTDHMETGVLL 362 Query: 363 VRK 365 R+ Sbjct: 363 ERR 365 >gi|146294594|ref|YP_001185018.1| tRNA (uracil-5-)-methyltransferase [Shewanella putrefaciens CN-32] gi|172046872|sp|A4YB86|TRMA_SHEPC RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|145566284|gb|ABP77219.1| tRNA (uracil-5-)-methyltransferase [Shewanella putrefaciens CN-32] Length = 366 Score = 419 bits (1077), Expect = e-115, Method: Composition-based stats. Identities = 193/362 (53%), Positives = 263/362 (72%), Gaps = 1/362 (0%) Query: 3 GTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIM 62 + Y+ QL K +L Q F+ P++++F SEP +YRMRAEF +WHDGDDLY+ M Sbjct: 4 AAMDPQTYDAQLEHKRIKLEQAFAQFETPSVEVFASEPANYRMRAEFRMWHDGDDLYYYM 63 Query: 63 FDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122 FD+ E++R D ++P S+LIN +M ++A ++ P LR KLFQ+D+L++ S + +V+L+ Sbjct: 64 FDKVLNEKVRCDQYLPASVLINQMMSALIAELKPNPSLRHKLFQVDFLSTLSGEILVSLL 123 Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182 YHR LDD WR A L+ L ++ + + +IGRA K KI LD+D+V E L V +T +Y+Q Sbjct: 124 YHRQLDDQWRTNAAALKAKLSSQ-FNVNIIGRARKQKIDLDKDFVVESLQVNDKTFLYKQ 182 Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 IENSFTQPNA + V MLEW + T+ QGDLLELYCGNGNFS+ LA++F+RVLA E+AKP Sbjct: 183 IENSFTQPNAKVAVKMLEWAIDVTQDSQGDLLELYCGNGNFSIALAQNFNRVLATELAKP 242 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302 SVEAA+YNI AN + N++I+RMS+++F+ AM ++R F RL+ ID+ SY TIFVDPPR+ Sbjct: 243 SVEAAQYNIEANGIKNLQIIRMSAEDFSDAMAKKRSFRRLEGIDLDSYVCNTIFVDPPRA 302 Query: 303 GLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362 G+D T+ +VQ Y ILYISCNPD+L +L L TH + + ALFDQFPYT HME GVLL Sbjct: 303 GIDPDTLALVQGYERILYISCNPDTLKDNLEQLYKTHRVTQFALFDQFPYTDHMETGVLL 362 Query: 363 VR 364 R Sbjct: 363 ER 364 >gi|152998729|ref|YP_001364410.1| tRNA (uracil-5-)-methyltransferase [Shewanella baltica OS185] gi|171704511|sp|A6WHQ8|TRMA_SHEB8 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|151363347|gb|ABS06347.1| tRNA (uracil-5-)-methyltransferase [Shewanella baltica OS185] Length = 365 Score = 419 bits (1077), Expect = e-115, Method: Composition-based stats. Identities = 191/363 (52%), Positives = 267/363 (73%), Gaps = 1/363 (0%) Query: 3 GTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIM 62 + Y+ QL K +L Q F+ P++++F SEP +YRMRAEF +WHDGDDLY+ M Sbjct: 4 AAMDPQTYDTQLEHKRIKLEQAFAQFETPSVEVFASEPANYRMRAEFRMWHDGDDLYYYM 63 Query: 63 FDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122 FD+ E++R D ++P S+LIN +M ++A ++ P LR KLFQ+D+L++ S + +V+L+ Sbjct: 64 FDKVLNEKVRCDQYLPASVLINQMMSALIAELKPNPSLRHKLFQVDFLSTLSGEILVSLL 123 Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182 YHR LDD WR A L+ L ++ + + +IGRA K KI LD+D+V E L V +T +Y+Q Sbjct: 124 YHRQLDDQWRADAAALKTKLSSQ-FNVNIIGRARKQKIDLDKDFVVESLQVNDKTFLYKQ 182 Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 IENSFTQPNA ++V MLEW + AT+ +GDLLELYCGNGNFS+ LA++F+RVLA E+AKP Sbjct: 183 IENSFTQPNAKVSVKMLEWAIDATQDSEGDLLELYCGNGNFSIALAQNFNRVLATELAKP 242 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302 SV+AA+YNI N + N++I+RMS+++F+ AM ++R F RL+ ID+ SY TIFVDPPR+ Sbjct: 243 SVDAAQYNIEVNGIENLQIIRMSAEDFSDAMAKKRSFRRLEGIDLDSYVCNTIFVDPPRA 302 Query: 303 GLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362 G+D T+ +VQ Y ILYISCNP++L +L +L+ TH + R ALFDQFPYT HME GVLL Sbjct: 303 GIDPDTLALVQGYERILYISCNPETLKDNLQLLNETHKVTRFALFDQFPYTEHMETGVLL 362 Query: 363 VRK 365 R+ Sbjct: 363 ERR 365 >gi|91791600|ref|YP_561251.1| tRNA (uracil-5-)-methyltransferase [Shewanella denitrificans OS217] gi|123061360|sp|Q12SP8|TRMA_SHEDO RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|91713602|gb|ABE53528.1| tRNA (uracil-5-)-methyltransferase [Shewanella denitrificans OS217] Length = 365 Score = 419 bits (1076), Expect = e-115, Method: Composition-based stats. Identities = 193/363 (53%), Positives = 267/363 (73%), Gaps = 1/363 (0%) Query: 3 GTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIM 62 + Y+ QLAEK +L + F P L++F SEP HYRMRAEF +WH+GDDLY+ M Sbjct: 4 AAMDPSNYDAQLAEKKRKLSEGFAEFAPPELEVFASEPAHYRMRAEFRVWHEGDDLYYYM 63 Query: 63 FDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122 FD+ ++R + ++P S LINA+M ++ +R LR +LFQ+D+L++ S + +V+L+ Sbjct: 64 FDKVLDAKVRCEQYLPASTLINAIMTSLVEELRPNHSLRHRLFQVDFLSTLSGEILVSLL 123 Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182 YHR LD+ W+ A L+ L ++ + + +IGRA K KI LD+D+V E + V G+ L Y+Q Sbjct: 124 YHRQLDEQWQVEAAALKQRLSSQ-FNVNIIGRARKQKIDLDKDFVVETIKVNGQDLHYKQ 182 Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 IENSFTQPNA +++ MLEW + ATK QGDLLELYCGNGNF++ LA++F+RVLA E+AKP Sbjct: 183 IENSFTQPNAKVSIKMLEWAIDATKQSQGDLLELYCGNGNFTIALAQNFNRVLATELAKP 242 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302 SV AA+YNIA N+V+NV+I+RMS+++F+ AM ++R F RL+ ID+ SY TIFVDPPR+ Sbjct: 243 SVGAAQYNIAINNVDNVQIIRMSAEDFSDAMAKKRSFRRLEGIDLDSYNCNTIFVDPPRA 302 Query: 303 GLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362 G+DD T+ ++Q Y ILYISCNP++L +L LS++H I R ALFDQFPYT HME GVLL Sbjct: 303 GIDDETLKLIQGYERILYISCNPETLKDNLQTLSSSHKITRFALFDQFPYTHHMESGVLL 362 Query: 363 VRK 365 RK Sbjct: 363 ERK 365 >gi|119773334|ref|YP_926074.1| tRNA (uracil-5-)-methyltransferase [Shewanella amazonensis SB2B] gi|262827940|sp|A1S1Z8|TRMA_SHEAM RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|119765834|gb|ABL98404.1| tRNA (uracil-5-)-methyltransferase [Shewanella amazonensis SB2B] Length = 365 Score = 418 bits (1075), Expect = e-115, Method: Composition-based stats. Identities = 205/362 (56%), Positives = 261/362 (72%), Gaps = 1/362 (0%) Query: 4 TLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63 + QYEQQL +K L + + P L++F S P HYRMR EF +WHDGDDLY+ MF Sbjct: 5 AMDPQQYEQQLEQKCQALTEAFAHYNPPALEVFPSAPAHYRMRCEFRVWHDGDDLYYCMF 64 Query: 64 DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIY 123 D KE++R D F+P S LIN +M ++ +R LR KLFQ+D+L++ S + +V+L+Y Sbjct: 65 DNVAKEKVRTDQFLPASELINRMMPALLDELRPNRALRHKLFQVDFLSTLSGEILVSLLY 124 Query: 124 HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQI 183 HR LDD W A L+ L +++ +IGRA K K LDRD+V E L V G+TL Y+Q+ Sbjct: 125 HRQLDDQWLTEARALKARLGEH-FKVDIIGRARKQKFVLDRDFVVESLDVDGKTLHYKQV 183 Query: 184 ENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 ENSFTQPNAG+ V MLEW L ATK GDLLELYCGNGNFS+ LA +F +VLA E+AKPS Sbjct: 184 ENSFTQPNAGVAVKMLEWALDATKQSSGDLLELYCGNGNFSIALAPNFGKVLATELAKPS 243 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 VEAA+YNI N V+N+ IVRMS++EFT+AM+ E+ FNRL DID+ SY+ TIFVDPPR+G Sbjct: 244 VEAAQYNIQVNKVSNLDIVRMSAEEFTEAMKGEKRFNRLGDIDLQSYQCNTIFVDPPRAG 303 Query: 304 LDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363 LDD TV +VQ Y +ILYISCNPD+L +L +LS TH + R ALFDQFPYT H E GV+L Sbjct: 304 LDDETVKLVQGYENILYISCNPDTLNDNLKVLSETHEVVRFALFDQFPYTHHTEAGVMLK 363 Query: 364 RK 365 R+ Sbjct: 364 RR 365 >gi|114561313|ref|YP_748826.1| tRNA (uracil-5-)-methyltransferase [Shewanella frigidimarina NCIMB 400] gi|122301133|sp|Q089S7|TRMA_SHEFN RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|114332606|gb|ABI69988.1| tRNA (uracil-5-)-methyltransferase [Shewanella frigidimarina NCIMB 400] Length = 365 Score = 418 bits (1074), Expect = e-115, Method: Composition-based stats. Identities = 197/363 (54%), Positives = 267/363 (73%), Gaps = 1/363 (0%) Query: 3 GTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIM 62 + Y+ QL +K +L + F P L++F SEP+HYRMRAEF +WH GDDLY+ M Sbjct: 4 AAMDPKNYDAQLQQKRIKLEKAFADFNPPALEVFASEPMHYRMRAEFRMWHQGDDLYYYM 63 Query: 63 FDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122 FD+ ++R D ++P L+IN +M ++A + P LR +LFQ+D+L++ S + +V+L+ Sbjct: 64 FDKALNAKVRCDQYLPAGLIINQMMAALIAELTPNPALRYRLFQVDFLSTLSGEILVSLL 123 Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182 YHR LD+ WRE A +L+ L A+ + + +IGRA K KI LD+D+V E LTV + L Y+Q Sbjct: 124 YHRQLDEEWREQATQLKAKLSAQ-FNVNIIGRARKQKIDLDKDFVVETLTVNEQVLHYKQ 182 Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 IENSFTQPNA ++V MLEW + ATK QGDLLELYCGNGNF++ LAR+F+RVLA E+AKP Sbjct: 183 IENSFTQPNAKVSVKMLEWAIDATKDSQGDLLELYCGNGNFTIALARNFNRVLATELAKP 242 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302 SV+AA+YNI NHV+NV+I+RMS+++F+ AM ++R+F RL+ ID+ SY TIFVDPPR+ Sbjct: 243 SVDAAQYNIDINHVDNVQIIRMSAEDFSDAMAKKRQFRRLEGIDLDSYDCNTIFVDPPRA 302 Query: 303 GLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362 G+D T+ ++Q Y ILYISCNP++L +L L TH I R ALFDQFPYT HME GVLL Sbjct: 303 GIDPETLKLIQGYERILYISCNPETLNDNLLTLGQTHKITRFALFDQFPYTDHMESGVLL 362 Query: 363 VRK 365 VRK Sbjct: 363 VRK 365 >gi|24371805|ref|NP_715847.1| tRNA (uracil-5-)-methyltransferase [Shewanella oneidensis MR-1] gi|50401568|sp|Q8CX51|TRMA_SHEON RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|24345607|gb|AAN53292.1|AE015470_5 tRNA (uracil-5-)-methyltransferase [Shewanella oneidensis MR-1] Length = 366 Score = 418 bits (1074), Expect = e-115, Method: Composition-based stats. Identities = 191/362 (52%), Positives = 263/362 (72%), Gaps = 1/362 (0%) Query: 3 GTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIM 62 + Y+ QL K +L Q F+ P++++F S+P HYRMRAEF +WH+GDDLY+ M Sbjct: 4 AAMDPTTYDAQLEAKRIKLEQAFAQFETPSIEVFASDPEHYRMRAEFRVWHEGDDLYYYM 63 Query: 63 FDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122 FD+ +++R D ++P S LIN +M ++A ++ P LR KLFQ+D+L++ S + +V+L+ Sbjct: 64 FDKALNDKVRCDQYLPASTLINEMMAALIAELKPNPSLRHKLFQVDFLSTLSGEILVSLL 123 Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182 YHR LDD WR AI L+ L ++ +++ +IGRA K KI LD+D+V E L V + Y+Q Sbjct: 124 YHRQLDDQWRAEAIALKAKLSSQ-FKVNIIGRARKQKIDLDKDFVVESLQVNDKVFHYKQ 182 Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 IENSFTQPNA + + MLEW + T+ QGDLLELYCGNGNFS+ LA++F+RVLA E+AKP Sbjct: 183 IENSFTQPNAKVAIKMLEWAIDVTQNSQGDLLELYCGNGNFSIALAQNFNRVLATELAKP 242 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302 SV+AA+YNI N ++N++I+RMS++EF+ AM ++R F RL+ ID+ SY TIFVDPPR+ Sbjct: 243 SVDAAQYNIEINGIDNLQIIRMSAEEFSDAMAKKRSFRRLEGIDLDSYLCNTIFVDPPRA 302 Query: 303 GLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362 G+D AT+ +VQ Y ILYISCNPD+L +L L TH + R ALFDQFPYT HME GVLL Sbjct: 303 GIDPATLDLVQGYERILYISCNPDTLKDNLQQLYKTHKVTRFALFDQFPYTDHMETGVLL 362 Query: 363 VR 364 R Sbjct: 363 ER 364 >gi|308047961|ref|YP_003911527.1| tRNA (uracil-5-)-methyltransferase [Ferrimonas balearica DSM 9799] gi|307630151|gb|ADN74453.1| tRNA (uracil-5-)-methyltransferase [Ferrimonas balearica DSM 9799] Length = 364 Score = 418 bits (1074), Expect = e-115, Method: Composition-based stats. Identities = 200/362 (55%), Positives = 259/362 (71%), Gaps = 3/362 (0%) Query: 3 GTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIM 62 L QY+ QL EK +R+R + F P L++F SEP HYRMRAEF +WHDGDDL +IM Sbjct: 4 AALDPRQYQTQLDEKCERMRALFAPFNAPELEVFPSEPEHYRMRAEFRVWHDGDDLNYIM 63 Query: 63 FDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122 FDQ + ++ + ++P S LIN M ++ ++ +P+LR KLFQ+D+L++ S + +++L+ Sbjct: 64 FDQTQQAKVEVTQYLPASALINEYMPRLIEALKPDPVLRRKLFQVDFLSTLSGELVISLL 123 Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182 YHR LDDAW + LR ++ IGRA K K+ L++DYVDE L V G+ YRQ Sbjct: 124 YHRQLDDAWCDAIRELRAR---WDNKVHFIGRARKQKVTLEQDYVDEVLHVHGQPYHYRQ 180 Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 IEN+FTQPN + MLEW + AT+ GDLLELYCGNGNFSL LA++F+RVLA E+AKP Sbjct: 181 IENAFTQPNGKVAEKMLEWAVDATRNSDGDLLELYCGNGNFSLALAQNFERVLATELAKP 240 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302 SVEAA+YNIA N+++NV I+RMS+++FT A+ REF RLK ID+ YR TIFVDPPR+ Sbjct: 241 SVEAAQYNIAKNNIDNVTILRMSAEDFTDAINGVREFRRLKGIDLSGYRCNTIFVDPPRA 300 Query: 303 GLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362 GLD AT MVQ Y ILYISCNP++L +L LS TH + RLALFDQFPYT HME GVLL Sbjct: 301 GLDPATEKMVQGYDRILYISCNPETLLENLKTLSQTHKLSRLALFDQFPYTHHMEAGVLL 360 Query: 363 VR 364 R Sbjct: 361 ER 362 >gi|304415290|ref|ZP_07395981.1| tRNA (uracil-5-)-methyltransferase [Candidatus Regiella insecticola LSR1] gi|304282856|gb|EFL91328.1| tRNA (uracil-5-)-methyltransferase [Candidatus Regiella insecticola LSR1] Length = 357 Score = 417 bits (1072), Expect = e-114, Method: Composition-based stats. Identities = 209/357 (58%), Positives = 274/357 (76%) Query: 14 LAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRI 73 +A+KVD L+ ++ F+VP +++F S HYRMRAEF +WHDGDDLYHIMF +TK+R+R+ Sbjct: 1 MAKKVDCLKDILSQFEVPEVEVFSSPIEHYRMRAEFRVWHDGDDLYHIMFAPKTKQRIRV 60 Query: 74 DYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRE 133 ++F S LIN LM +++ ++ +P+LR KLFQIDYL++ S++ I +L+YHR LD+ W++ Sbjct: 61 EHFPIASQLINRLMKILISIVKNQPILRHKLFQIDYLSTYSNKIIASLLYHRKLDEEWQQ 120 Query: 134 CAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAG 193 AIRLRD L + + +QLIGRA KTKI LD+D+VDE L++AGR +IYRQIENSFTQPNA Sbjct: 121 QAIRLRDQLRLQGFDLQLIGRAAKTKIVLDQDHVDEVLSIAGRDIIYRQIENSFTQPNAA 180 Query: 194 INVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAA 253 +N+HMLEW + +K QGDLLE YCGNGNFSL LAR+F RVLA EIAKPSV AA++NIA Sbjct: 181 VNIHMLEWAIDVSKNFQGDLLEPYCGNGNFSLALARNFRRVLATEIAKPSVAAAQFNIAV 240 Query: 254 NHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ 313 N ++NV I+RMS++E QA+ +R+FNRL+ I++ SY +TI VDPPR GLDD TV M Sbjct: 241 NGIDNVTIIRMSAQELVQALAGQRQFNRLRGIELKSYHCETILVDPPRCGLDDTTVKMAS 300 Query: 314 AYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRKPSGWH 370 Y I+YISCNP SL +L L T+ I RLALFDQFPYT H+ECGVLL ++ H Sbjct: 301 TYSRIIYISCNPISLRSNLEQLQHTYKISRLALFDQFPYTEHIECGVLLEKREPVNH 357 >gi|157959994|ref|YP_001500028.1| tRNA (uracil-5-)-methyltransferase [Shewanella pealeana ATCC 700345] gi|189036047|sp|A8GYV6|TRMA_SHEPA RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|157844994|gb|ABV85493.1| tRNA (uracil-5-)-methyltransferase [Shewanella pealeana ATCC 700345] Length = 365 Score = 415 bits (1067), Expect = e-114, Method: Composition-based stats. Identities = 191/363 (52%), Positives = 258/363 (71%), Gaps = 1/363 (0%) Query: 3 GTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIM 62 + Y+ QL K +L+Q+ F P L+ F SEP HYRMRAEF +WH+G+DLY+ M Sbjct: 4 AAMDPTTYDVQLEAKCVKLKQLFADFDTPELETFSSEPAHYRMRAEFRVWHEGEDLYYYM 63 Query: 63 FDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122 FD++ ++R D F+P S LIN +M ++ ++ +LR +LFQID+L++ S + +V+L+ Sbjct: 64 FDKELNSKVRCDQFLPASELINKMMPALVELLKPNTILRHRLFQIDFLSTLSGEILVSLL 123 Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182 YH+ LD W + A L+ L + + + LIGRA K KI D+D+V E L VAG+ L Y Q Sbjct: 124 YHKQLDSEWEQQAKILKQTLSTQ-FNVNLIGRARKQKIIFDKDFVVESLNVAGKQLQYHQ 182 Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 IENSFTQPN ++V MLEW + TK GDLLELYCGNGNFS+ LA++F+RVLA E+AKP Sbjct: 183 IENSFTQPNGKVSVKMLEWAIDITKNSSGDLLELYCGNGNFSIALAQNFERVLATELAKP 242 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302 SVE+A+YNI N V N++I+RMS+++FT+AM ++R F RL+ ID+ SY TIFVDPPR+ Sbjct: 243 SVESAQYNIKVNQVENLQIIRMSAEDFTEAMAKKRSFRRLEGIDLDSYNCNTIFVDPPRA 302 Query: 303 GLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362 GLD TV +VQ Y I+YISCNP++L +L+ LS TH I R ALFDQFPYT HME GV L Sbjct: 303 GLDADTVKLVQGYERIVYISCNPNTLIDNLAELSKTHKITRFALFDQFPYTDHMESGVFL 362 Query: 363 VRK 365 +K Sbjct: 363 EKK 365 >gi|332289572|ref|YP_004420424.1| hypothetical protein UMN179_01510 [Gallibacterium anatis UMN179] gi|330432468|gb|AEC17527.1| hypothetical protein UMN179_01510 [Gallibacterium anatis UMN179] Length = 365 Score = 414 bits (1065), Expect = e-114, Method: Composition-based stats. Identities = 210/365 (57%), Positives = 277/365 (75%) Query: 1 MSGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60 M Y QQL +KV L Q++ F +++ RS HYRMRAEF +WHDGDDLYH Sbjct: 1 MQTDFSESHYNQQLEDKVYYLTQLLKPFFQGEIKVHRSALKHYRMRAEFRVWHDGDDLYH 60 Query: 61 IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVT 120 IMFD ++K R RID F S LINA+M ++ ++ +P+LR +LFQIDYL++ S++ IV+ Sbjct: 61 IMFDPKSKRRYRIDQFPIASTLINAIMSALVPLLKQQPILRNQLFQIDYLSTVSNKIIVS 120 Query: 121 LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIY 180 L+YH+ LD+ W A +L+ L +++ +Q+IGRANK KICLD+D++DE L + G+ IY Sbjct: 121 LLYHKKLDETWIAAAKQLKQQLEQQQFDVQIIGRANKQKICLDQDFIDEVLPINGKNYIY 180 Query: 181 RQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240 RQ+ENSFTQPNAGIN M+EW L+ T+ +GDLLELYCGNGNFS+ LA+HF +VLA EIA Sbjct: 181 RQVENSFTQPNAGINCQMIEWALSCTENAEGDLLELYCGNGNFSVALAQHFRKVLATEIA 240 Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300 KPSV+AA++NI ANH++N++I+RMS++EFTQA++ REF RLK ID+ Y+ TIFVDPP Sbjct: 241 KPSVQAAQFNITANHIDNLQIIRMSAEEFTQALQGVREFYRLKGIDLKQYQCNTIFVDPP 300 Query: 301 RSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360 R+GLD T+ MVQ Y HILYISCNP +L +L++LS TH IE+ ALFDQFPYTRH+E GV Sbjct: 301 RAGLDAETLKMVQQYDHILYISCNPQTLAENLTVLSQTHHIEKAALFDQFPYTRHIESGV 360 Query: 361 LLVRK 365 LVRK Sbjct: 361 YLVRK 365 >gi|167856458|ref|ZP_02479177.1| tRNA (uracil-5-)-methyltransferase [Haemophilus parasuis 29755] gi|167852418|gb|EDS23713.1| tRNA (uracil-5-)-methyltransferase [Haemophilus parasuis 29755] Length = 364 Score = 414 bits (1065), Expect = e-114, Method: Composition-based stats. Identities = 200/361 (55%), Positives = 251/361 (69%) Query: 4 TLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63 TL I QY LA+K + L ++ F P L +F S+ H+R+RAEF +WHD DLYHIMF Sbjct: 2 TLPIHQYPALLAKKAENLTALLAPFNAPELDVFASDTSHFRLRAEFRVWHDNGDLYHIMF 61 Query: 64 DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIY 123 DQ TK+R R+D F S LIN +M ++A I+ LL KLFQIDYL++ S Q V+++Y Sbjct: 62 DQATKQRYRVDQFPIASQLINRMMTVLLAEIKDNELLTRKLFQIDYLSTLSGQIAVSMLY 121 Query: 124 HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQI 183 H+ L + W E A L+ L + +QLIGRA K KI LD DYV+E L V G+ YRQ+ Sbjct: 122 HKSLTEEWIEQAKLLKQRLIGYGFDVQLIGRATKQKIALDCDYVEEALNVDGQIYRYRQV 181 Query: 184 ENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 ENSFTQPN +N+ MLEW A T +GDLLELYCGNGNFS+ LA F +VLA EI+K S Sbjct: 182 ENSFTQPNGKMNIKMLEWARACTANSKGDLLELYCGNGNFSIALANQFRKVLATEISKSS 241 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 VE+A+YNIA N V+N++I+RMS++EFT+AM R F RL+ ID+ Y TIFVDPPR G Sbjct: 242 VESAQYNIAVNGVDNLQIIRMSAEEFTEAMNGVRVFYRLRGIDLKQYDCNTIFVDPPRVG 301 Query: 304 LDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363 LD AT+ MVQ Y ILYISCNP +L +L L+ TH IER ALFDQFPYT H+E GV L+ Sbjct: 302 LDQATLEMVQGYERILYISCNPHTLADNLKQLTQTHRIERCALFDQFPYTEHIESGVWLI 361 Query: 364 R 364 R Sbjct: 362 R 362 >gi|332535185|ref|ZP_08410992.1| tRNA (uracil54-C5-)-methyltransferase [Pseudoalteromonas haloplanktis ANT/505] gi|332035404|gb|EGI71904.1| tRNA (uracil54-C5-)-methyltransferase [Pseudoalteromonas haloplanktis ANT/505] Length = 365 Score = 414 bits (1065), Expect = e-114, Method: Composition-based stats. Identities = 195/361 (54%), Positives = 259/361 (71%), Gaps = 1/361 (0%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 + QY+ QL+EK R+ F V L++F SEP +YR RAEF +WHDGDDL+HIMFD Sbjct: 6 IDTTQYQAQLSEKEQRISTQFQRFGVEQLEVFSSEPTNYRQRAEFRVWHDGDDLFHIMFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTKE++R+D F P + L+ +M M+ ++ +LR KLFQIDYL++ S + +V+L+YH Sbjct: 66 QQTKEKIRVDTFDPAAPLVGEIMQVMIENLKPCEILRRKLFQIDYLSTLSGEILVSLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + LDD W L++ L + KY+I IGRA K K L D+V ERLT+ G+ LIY+Q+E Sbjct: 126 KPLDDEWLSEIKALKEKLSS-KYKIDFIGRARKQKEVLGDDFVTERLTINGQELIYQQVE 184 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N++MLEW K ++ DLLELYCGNGNFS+ LA F++VLA EI+K SV Sbjct: 185 NSFTQPNAKVNINMLEWAQDLCKPLKNDLLELYCGNGNFSIALAGCFNKVLATEISKSSV 244 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 +A+YNIA N+V N+ I+RMSS+EFTQAM ER F+RL ID+ SY +TI VDPPR+G+ Sbjct: 245 HSAQYNIAKNNVENLDIIRMSSEEFTQAMNGERTFSRLDGIDLKSYDCQTILVDPPRAGM 304 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D T +V Y I+YISCNP++L RDL L+ TH ++R A+FDQFPYT H+E GV L R Sbjct: 305 DALTCDLVANYESIIYISCNPETLERDLDHLTRTHNVKRFAIFDQFPYTHHIESGVFLQR 364 Query: 365 K 365 K Sbjct: 365 K 365 >gi|33151895|ref|NP_873248.1| tRNA (uracil-5-)-methyltransferase [Haemophilus ducreyi 35000HP] gi|50401509|sp|Q7U339|TRMA_HAEDU RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|33148116|gb|AAP95637.1| tRNA (uracil-5-)-methyltransferase [Haemophilus ducreyi 35000HP] Length = 369 Score = 414 bits (1065), Expect = e-114, Method: Composition-based stats. Identities = 200/368 (54%), Positives = 262/368 (71%), Gaps = 6/368 (1%) Query: 4 TLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGD-----DL 58 +L I+QY + LA+KVD L ++ F P IF SE H+RMRAEF +WH + DL Sbjct: 2 SLPIEQYPELLAQKVDNLTALLAPFNPPPFDIFASETSHFRMRAEFRVWHQKNEQGENDL 61 Query: 59 YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAI 118 YHIMFD TK+R R+D + LIN +M +++ I+ P+L KLFQ+DYLT+ S + Sbjct: 62 YHIMFDPTTKQRYRVDQLPIANQLINTMMQKLLTQIQGIPVLTHKLFQVDYLTTLSGEIA 121 Query: 119 VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTL 178 ++L+YH+ L D W A L+ L + +IGRA+K KI +D DYV E+L VAG+TL Sbjct: 122 ISLLYHKKLTDEWLAQAKLLKQRLSEPGLTVHIIGRASKQKIAIDCDYVKEKLNVAGKTL 181 Query: 179 IYRQIENSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHFDRVLAV 237 IYRQ+ENSFTQPNA +N++MLEW T Q DLLELYCGNGNFS+ LA +F +VLA Sbjct: 182 IYRQVENSFTQPNAKMNINMLEWAQKCTANSQDSDLLELYCGNGNFSIALAGNFRKVLAT 241 Query: 238 EIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFV 297 EI K SV +A+YNIA N ++N++I+RMS++EFTQA+ R+FNRL+ ID+ +Y+ TIFV Sbjct: 242 EICKSSVHSAQYNIAQNGIDNLQIIRMSAEEFTQAINGVRQFNRLQGIDLSAYQCNTIFV 301 Query: 298 DPPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHME 357 DPPR+GLD AT+ MVQ YP ILYISCNP +L +L L+TTH IER+ALFDQFPYT H+E Sbjct: 302 DPPRAGLDQATLNMVQNYPRILYISCNPATLADNLRQLTTTHRIERVALFDQFPYTHHIE 361 Query: 358 CGVLLVRK 365 GV L+RK Sbjct: 362 SGVWLIRK 369 >gi|90407368|ref|ZP_01215553.1| tRNA (uracil-5-)-methyltransferase [Psychromonas sp. CNPT3] gi|90311519|gb|EAS39619.1| tRNA (uracil-5-)-methyltransferase [Psychromonas sp. CNPT3] Length = 365 Score = 414 bits (1064), Expect = e-113, Method: Composition-based stats. Identities = 192/359 (53%), Positives = 270/359 (75%), Gaps = 1/359 (0%) Query: 7 IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66 D Y+ QL K + + F +P+L+IF S +HYRMR+EF +WH+GDDLY+IMFD++ Sbjct: 8 PDNYDMQLNAKKTLFNEQFVDFNLPDLEIFASPKLHYRMRSEFRVWHEGDDLYYIMFDKE 67 Query: 67 TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL 126 TK+++R+D F P S LINALM +++ I++ LR KLFQID+L++ S Q +V+L+YH+ Sbjct: 68 TKQKIRVDQFPPASELINALMPQLINLIKVSKTLRFKLFQIDFLSTLSGQILVSLLYHKQ 127 Query: 127 LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS 186 LD+ W E L+ L ++++ I +GRA K K+ LD+D+V E L V G+TLIY+Q+ENS Sbjct: 128 LDEQWVEELNALKATL-SKQFDINFMGRAKKQKLILDKDHVIESLEVDGKTLIYQQVENS 186 Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246 FTQPN +++ MLEW + T+ +GDLLELYCGNGNFS+ LA++F++VLA EIAKPSV + Sbjct: 187 FTQPNTEVSIKMLEWAIDCTRNSEGDLLELYCGNGNFSIALAKNFNKVLATEIAKPSVHS 246 Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306 A+YNIAANH++N+ I+RMS++EFTQA+ + R F+RL+ I++ Y+ TIFVDPPR+GLDD Sbjct: 247 AQYNIAANHIDNLTIIRMSAEEFTQALNKVRVFHRLEGINLDDYQCNTIFVDPPRAGLDD 306 Query: 307 ATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 T+ MVQ Y +ILYISCNP++L +L TH +ER ALFDQFPYT H E GV L+++ Sbjct: 307 ETIKMVQTYDNILYISCNPETLKSNLQQFDATHKVERFALFDQFPYTHHTEAGVYLIKR 365 >gi|219872016|ref|YP_002476391.1| tRNA (uracil-5-)-methyltransferase [Haemophilus parasuis SH0165] gi|254789078|sp|B8F7Z1|TRMA_HAEPS RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|219692220|gb|ACL33443.1| tRNA (uracil-5-)-methyltransferase [Haemophilus parasuis SH0165] Length = 369 Score = 414 bits (1063), Expect = e-113, Method: Composition-based stats. Identities = 200/361 (55%), Positives = 251/361 (69%) Query: 4 TLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63 TL I QY LA+K + L ++ F P L +F S+ H+R+RAEF +WHD DLYHIMF Sbjct: 2 TLPIHQYPALLAKKAENLTALLAPFNAPELDVFASDTSHFRLRAEFRVWHDNGDLYHIMF 61 Query: 64 DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIY 123 DQ TK+R R+D F S LIN +M ++A I+ LL KLFQIDYL++ S Q V+++Y Sbjct: 62 DQATKQRYRVDQFPIASQLINRMMTVLLAEIKGNELLTRKLFQIDYLSTLSGQIAVSMLY 121 Query: 124 HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQI 183 H+ L + W E A L+ L + +QLIGRA K KI LD DYV+E L V G+ YRQ+ Sbjct: 122 HKSLTEEWIEQAKLLKQRLIGYGFDVQLIGRATKQKIALDCDYVEEALNVDGQIYRYRQV 181 Query: 184 ENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 ENSFTQPN +N+ MLEW A T +GDLLELYCGNGNFS+ LA F +VLA EI+K S Sbjct: 182 ENSFTQPNGKMNIKMLEWARACTANSKGDLLELYCGNGNFSIALANQFRKVLATEISKSS 241 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 VE+A+YNIA N V+N++I+RMS++EFT+AM R F RL+ ID+ Y TIFVDPPR G Sbjct: 242 VESAQYNIAVNGVDNLQIIRMSAEEFTEAMNGVRVFYRLRGIDLKQYDCNTIFVDPPRVG 301 Query: 304 LDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363 LD AT+ MVQ Y ILYISCNP +L +L L+ TH IER ALFDQFPYT H+E GV L+ Sbjct: 302 LDQATLEMVQGYEKILYISCNPHTLADNLKQLTQTHRIERCALFDQFPYTEHIESGVWLI 361 Query: 364 R 364 R Sbjct: 362 R 362 >gi|114045686|ref|YP_736236.1| tRNA (uracil-5-)-methyltransferase [Shewanella sp. MR-7] gi|122945065|sp|Q0I0C6|TRMA_SHESR RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|113887128|gb|ABI41179.1| tRNA (uracil-5-)-methyltransferase [Shewanella sp. MR-7] Length = 365 Score = 413 bits (1062), Expect = e-113, Method: Composition-based stats. Identities = 190/363 (52%), Positives = 264/363 (72%), Gaps = 1/363 (0%) Query: 3 GTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIM 62 + Y+ QL K +L Q F+ P++++F SEP HYRMRAEF +WH+GDDLY+ M Sbjct: 4 AAMDPTTYDAQLTAKRIKLEQAFAQFETPSVEVFASEPAHYRMRAEFRVWHEGDDLYYYM 63 Query: 63 FDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122 FD+ +++R D ++P S LIN +M ++A ++ LR KLFQ+D+L++ S + +V+L+ Sbjct: 64 FDKVLNDKVRCDQYLPASALINQMMAALIAELKPNHSLRHKLFQVDFLSTLSGEILVSLL 123 Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182 YHR LDD WR A L+ L ++ +++ +IGRA K KI LD+D+V E L V + Y+Q Sbjct: 124 YHRQLDDQWRSEAAALKARLSSQ-FKVNIIGRARKQKIDLDKDFVVESLQVNDKVFHYKQ 182 Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 IENSFTQPNA + + MLEW + T+ QGDLLELYCGNGNFS+ LA++F+RVLA E+AKP Sbjct: 183 IENSFTQPNAKVAIKMLEWAIDVTQNSQGDLLELYCGNGNFSIALAQNFNRVLATELAKP 242 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302 SV+AA+YNI N+++N++I+RMS++EF+ AM ++R F RL+ ID+ SY TIFVDPPR+ Sbjct: 243 SVDAAQYNIEVNNIDNLQIIRMSAEEFSDAMAKKRSFRRLEGIDLDSYVCNTIFVDPPRA 302 Query: 303 GLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362 G+D AT+ +VQ Y ILYISCNPD+L +L L+ TH + R ALFDQFPYT HME GVLL Sbjct: 303 GIDPATLELVQGYERILYISCNPDTLKDNLQQLNQTHKVTRFALFDQFPYTDHMETGVLL 362 Query: 363 VRK 365 R+ Sbjct: 363 ERR 365 >gi|149911328|ref|ZP_01899948.1| tRNA (uracil-5-)-methyltransferase [Moritella sp. PE36] gi|149805568|gb|EDM65571.1| tRNA (uracil-5-)-methyltransferase [Moritella sp. PE36] Length = 365 Score = 413 bits (1061), Expect = e-113, Method: Composition-based stats. Identities = 196/361 (54%), Positives = 267/361 (73%), Gaps = 3/361 (0%) Query: 7 IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66 D Y+ QL +K R R++ F P L++F S +YR+RAEF +WHDGDDLY+IMFD++ Sbjct: 6 PDNYQSQLDDKAARQREIFKKFSPPELEVFDSPAENYRLRAEFRVWHDGDDLYYIMFDKE 65 Query: 67 TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL 126 TK++++IDYF+PGS LIN +M ++ ++ LLR KLFQ+D+L++ S + +V+L+YHR Sbjct: 66 TKQKIKIDYFLPGSKLINEIMPALLFELKKSNLLRFKLFQVDFLSTLSGELLVSLLYHRQ 125 Query: 127 LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS 186 L D W A L++ L + I +IGRA K K+ LDR++V E L VAG+ L Y+Q+ENS Sbjct: 126 LSDEWITEAKALKEKLSEH-FNIDIIGRARKQKVVLDREFVVEELNVAGKKLKYKQVENS 184 Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246 FTQPN +N MLEW L TK GDLLELYCGNGNFS+ LA +F++VLA EI+K SV++ Sbjct: 185 FTQPNGIVNQKMLEWSLDVTKNCSGDLLELYCGNGNFSIALAPNFEKVLATEISKSSVQS 244 Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK--DIDIHSYRFKTIFVDPPRSGL 304 A+YNIA N ++N+ I+R+S++EFT A+ EREFNRLK ++D+ ++ TIFVDPPR+GL Sbjct: 245 AQYNIAENGLDNLTILRLSAEEFTIAINGEREFNRLKAANVDLTTFNCNTIFVDPPRAGL 304 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D TV MVQ Y +I+YISC+P++L +L LS THTIER ALFDQFPYT H+E GV LV+ Sbjct: 305 DADTVKMVQGYDNIVYISCSPETLSDNLEALSQTHTIERFALFDQFPYTHHVESGVYLVK 364 Query: 365 K 365 K Sbjct: 365 K 365 >gi|119472791|ref|ZP_01614728.1| tRNA (uracil-5-)-methyltransferase [Alteromonadales bacterium TW-7] gi|119444750|gb|EAW26055.1| tRNA (uracil-5-)-methyltransferase [Alteromonadales bacterium TW-7] Length = 365 Score = 413 bits (1061), Expect = e-113, Method: Composition-based stats. Identities = 196/361 (54%), Positives = 261/361 (72%), Gaps = 1/361 (0%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 + QY+ QL+EK R+ F V L++F SEPI+YR RAEF +WHDGDDL+HIMFD Sbjct: 6 IDTTQYQAQLSEKEQRITSQFQRFGVEQLEVFSSEPINYRQRAEFRVWHDGDDLFHIMFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTKE++R+D F P + L+ +M M+ ++ +LR KLFQIDYL++ S + +V+L+YH Sbjct: 66 QQTKEKIRVDTFDPAAPLVGEIMQVMIENLKPCEVLRRKLFQIDYLSTLSGEILVSLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + LDD W L+ L + KY+I IGRA K K L D+V E+LTV G+ LIY+Q+E Sbjct: 126 KPLDDEWLREIKSLKAKL-SEKYKIDFIGRARKQKEVLGDDFVTEQLTVNGQELIYQQVE 184 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+ MLEW K ++ DLLELYCGNGNFS+ LA F++VLA EI+K SV Sbjct: 185 NSFTQPNAKVNISMLEWAQDLCKPLKNDLLELYCGNGNFSIALAGSFNKVLATEISKSSV 244 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 +A+YNIA N+V+N+ I+RMSS+EFTQAM ER F+RL ID+ SY +TI VDPPR+G+ Sbjct: 245 HSAQYNIAKNNVDNLDIIRMSSEEFTQAMNGERTFSRLDGIDLKSYDCQTILVDPPRAGM 304 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D+ T +V Y +I+YISCNPD+L RDL L+ +H ++R A+FDQFPYT H+E GV L R Sbjct: 305 DELTCDLVANYENIIYISCNPDTLERDLDHLTRSHNVKRFAIFDQFPYTHHIESGVFLQR 364 Query: 365 K 365 K Sbjct: 365 K 365 >gi|167626059|ref|YP_001676353.1| tRNA (uracil-5-)-methyltransferase [Shewanella halifaxensis HAW-EB4] gi|189036046|sp|B0TMV6|TRMA_SHEHH RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|167356081|gb|ABZ78694.1| tRNA (uracil-5-)-methyltransferase [Shewanella halifaxensis HAW-EB4] Length = 365 Score = 413 bits (1061), Expect = e-113, Method: Composition-based stats. Identities = 191/363 (52%), Positives = 256/363 (70%), Gaps = 1/363 (0%) Query: 3 GTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIM 62 + Y+ QL K +L Q+ F P L+ F SEP HYRMRAEF +WH+G+DLY+ M Sbjct: 4 AAMDPTTYDVQLETKRVKLTQLFADFDTPELETFSSEPAHYRMRAEFRVWHEGEDLYYYM 63 Query: 63 FDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122 FD++ ++R D F+P S LIN +M ++ ++ +LR +LFQID+L++ S + +V+L+ Sbjct: 64 FDKELNSKVRCDQFLPASELINKMMPALVELLKPNTILRHRLFQIDFLSTLSGEILVSLL 123 Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182 YH+ LD W + A L+ L + + + LIGRA K KI D+D+V E L VAG+ L Y Q Sbjct: 124 YHKQLDSEWEQQAKILKQTLSTQ-FNVNLIGRARKQKIIFDKDFVVESLNVAGKQLQYHQ 182 Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 IENSFTQPN ++V MLEW + TK GDLLELYCGNGNFS+ LA++FDRVLA E+AKP Sbjct: 183 IENSFTQPNGKVSVKMLEWAIDVTKNSTGDLLELYCGNGNFSIALAQNFDRVLATELAKP 242 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302 SVE+A+YNI N V N++I+RMS+++FT+AM ++R F RL+ ID+ SY TIFVDPPR+ Sbjct: 243 SVESAQYNIKVNQVENLQIIRMSAEDFTEAMAKKRSFRRLEGIDLDSYNCNTIFVDPPRA 302 Query: 303 GLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362 GLD TV +VQ Y I+YISCNP +L +L+ LS TH I R ALFDQFPYT HME GV L Sbjct: 303 GLDADTVKLVQGYERIVYISCNPHTLLDNLAELSKTHKITRFALFDQFPYTDHMESGVFL 362 Query: 363 VRK 365 ++ Sbjct: 363 EKR 365 >gi|319424830|gb|ADV52904.1| tRNA (uracil-5-)-methyltransferase [Shewanella putrefaciens 200] Length = 365 Score = 412 bits (1060), Expect = e-113, Method: Composition-based stats. Identities = 190/363 (52%), Positives = 262/363 (72%), Gaps = 1/363 (0%) Query: 3 GTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIM 62 + Y+ QL K +L Q F+ P++++F SEP +YRMRAEF +WHDGDDLY+ M Sbjct: 4 AAMDPQTYDAQLEAKRIKLEQAFAQFETPSVEVFASEPANYRMRAEFRVWHDGDDLYYYM 63 Query: 63 FDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122 FD+ E++R + ++P S+LIN +M ++A ++ LR KLFQ+D+L++ S + +V+L+ Sbjct: 64 FDKVLNEKVRCNQYLPASVLINQMMSALIAELKPNHSLRHKLFQVDFLSTLSGEILVSLL 123 Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182 YHR LDD W A L+ L ++++ +IGRA K KI LD+D+V E L V +T +Y+Q Sbjct: 124 YHRQLDDQWLAEANMLKTKL-GHQFKVNIIGRARKQKIDLDKDFVVESLQVNDKTFLYKQ 182 Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 IENSFTQPNA + V MLEW + T+ QGDLLELYCGNGNFS+ LA++F+RVLA E+AKP Sbjct: 183 IENSFTQPNAKVAVKMLEWAIDVTQDSQGDLLELYCGNGNFSIALAQNFNRVLATELAKP 242 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302 SVEAA+YNI AN + N++I+RMS+++F+ A+ ++R F RL+ ID+ SY TIFVDPPR+ Sbjct: 243 SVEAAQYNIEANGIKNLQIIRMSAEDFSDAIAKKRSFRRLEGIDLDSYVCNTIFVDPPRA 302 Query: 303 GLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362 G+D T+ +VQ Y ILYISCNPD+L +L L TH + R ALFDQFPYT HME GVLL Sbjct: 303 GIDPDTLALVQGYERILYISCNPDTLKDNLEQLYKTHRVTRFALFDQFPYTDHMETGVLL 362 Query: 363 VRK 365 R+ Sbjct: 363 ERR 365 >gi|117918637|ref|YP_867829.1| tRNA (uracil-5-)-methyltransferase [Shewanella sp. ANA-3] gi|134035337|sp|A0KRK4|TRMA_SHESA RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|117610969|gb|ABK46423.1| tRNA (uracil-5-)-methyltransferase [Shewanella sp. ANA-3] Length = 365 Score = 412 bits (1060), Expect = e-113, Method: Composition-based stats. Identities = 188/363 (51%), Positives = 263/363 (72%), Gaps = 1/363 (0%) Query: 3 GTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIM 62 + Y+ QL K +L Q F+ P++++F SEP HYRMRAEF +WH+GDDLY+ M Sbjct: 4 AAMDPTTYDAQLTAKRIKLEQAFAQFETPSVEVFASEPAHYRMRAEFRVWHEGDDLYYYM 63 Query: 63 FDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122 FD+ +++R D ++P S LIN +M ++ ++ LR KLFQ+D+L++ S + +V+L+ Sbjct: 64 FDKVLNDKVRCDQYLPASALINQMMAALITELKPNHSLRHKLFQVDFLSTLSGEILVSLL 123 Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182 YHR LDD WR A L+ L ++ +++ +IGRA K KI LD+D+V E L V + Y+Q Sbjct: 124 YHRQLDDQWRSEAAALKARLSSQ-FKVNIIGRARKQKIDLDKDFVVESLQVNDKVFHYKQ 182 Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 IENSFTQPNA + + MLEW + T+ QGDLLELYCGNGNFS+ LA++F+RVLA E+AKP Sbjct: 183 IENSFTQPNAKVAIKMLEWAIDVTQNSQGDLLELYCGNGNFSIALAQNFNRVLATELAKP 242 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302 SV+AA+YNI N+++N++I+RMS++EF+ AM ++R F RL+ ID+ SY TIFVDPPR+ Sbjct: 243 SVDAAQYNIEVNNIDNLQIIRMSAEEFSDAMAKKRSFRRLEGIDLDSYVCNTIFVDPPRA 302 Query: 303 GLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362 G+D AT+ +V+ Y ILYISCNPD+L +L L+ TH + R ALFDQFPYT HME GVLL Sbjct: 303 GIDPATLELVRGYERILYISCNPDTLKDNLQQLNQTHKVTRFALFDQFPYTDHMETGVLL 362 Query: 363 VRK 365 R+ Sbjct: 363 ERR 365 >gi|77359221|ref|YP_338796.1| tRNA (uracil-5-)-methyltransferase [Pseudoalteromonas haloplanktis TAC125] gi|123589634|sp|Q3ILM2|TRMA_PSEHT RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|76874132|emb|CAI85353.1| tRNA (Uracil-5-)-methyltransferase (tRNA(M-5-U54)-methyltransferase) (RUMT) [Pseudoalteromonas haloplanktis TAC125] Length = 367 Score = 412 bits (1059), Expect = e-113, Method: Composition-based stats. Identities = 194/363 (53%), Positives = 261/363 (71%), Gaps = 1/363 (0%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 + QY+ QL+EK R+ F V L++F SEPI+YR RAEF +WHDGDDL+HIMFD Sbjct: 6 IDTSQYDAQLSEKEQRIAAQFQRFGVDKLEVFSSEPINYRQRAEFRVWHDGDDLFHIMFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTK+++R+D F P + L+ +M M+ ++ +LR KLFQIDYL++ S + +V+L+YH Sbjct: 66 QQTKDKIRVDSFDPAAPLVGEVMQVMIDNLKSCEILRRKLFQIDYLSTLSGEILVSLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + LD+ W L++ L + KY+I IGRA K K L DYV ERL V G+ LIY+Q+E Sbjct: 126 KPLDEHWLSEINTLKEKLSS-KYKIDFIGRARKQKEMLGDDYVTERLNVNGQELIYQQVE 184 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+ MLEW K ++ DLLELYCGNGNFS+ LA F++VLA EI+K SV Sbjct: 185 NSFTQPNAKVNIKMLEWAQDLCKPLKNDLLELYCGNGNFSIALAGSFNKVLATEISKSSV 244 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 +A+YNIA N V+N+ I+RMSS+EFTQAM ER F+RL+ ID++SY +TI VDPPR+G+ Sbjct: 245 HSAQYNIAQNKVDNLDIIRMSSEEFTQAMNGERSFSRLEGIDLNSYNCQTILVDPPRAGM 304 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D T +V Y I+YISCNP++L RDL L+ TH ++R A+FDQFPYT H+E GV L + Sbjct: 305 DTLTCDLVANYESIIYISCNPETLERDLDHLTRTHEVKRFAIFDQFPYTHHIESGVFLQK 364 Query: 365 KPS 367 K + Sbjct: 365 KNT 367 >gi|113968523|ref|YP_732316.1| tRNA (uracil-5-)-methyltransferase [Shewanella sp. MR-4] gi|123325499|sp|Q0HNV8|TRMA_SHESM RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|113883207|gb|ABI37259.1| tRNA (uracil-5-)-methyltransferase [Shewanella sp. MR-4] Length = 365 Score = 412 bits (1059), Expect = e-113, Method: Composition-based stats. Identities = 191/363 (52%), Positives = 264/363 (72%), Gaps = 1/363 (0%) Query: 3 GTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIM 62 + Y+ QL K +L Q F+ P++++F SEP HYRMRAEF IWH+GDDLY+ M Sbjct: 4 AAMDPTTYDAQLTAKRIKLEQAFAQFETPSVEVFASEPAHYRMRAEFRIWHEGDDLYYYM 63 Query: 63 FDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122 FD+ +++R D ++P S LIN +M ++A ++ LR KLFQ+D+L++ S + +V+L+ Sbjct: 64 FDKVLNDKVRCDQYLPASALINQMMAALIAELKPNHSLRHKLFQVDFLSTLSGEILVSLL 123 Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182 YHR LDD WR A L+ L ++ +++ +IGRA K KI LD+D+V E L V + Y+Q Sbjct: 124 YHRQLDDQWRSEAAALKARLSSQ-FKVNIIGRARKQKIDLDKDFVVESLQVNDKVFHYKQ 182 Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 IENSFTQPNA + + MLEW + T+ QGDLLELYCGNGNFS+ LA++F+RVLA E+AKP Sbjct: 183 IENSFTQPNAKVAIKMLEWAIDVTQHSQGDLLELYCGNGNFSIALAQNFNRVLATELAKP 242 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302 SV+AA+YNI N+++N++I+RMS++EF+ AM ++R F RL+ ID+ SY TIFVDPPR+ Sbjct: 243 SVDAAQYNIEVNNIDNLQIIRMSAEEFSDAMAKKRSFRRLEGIDLDSYVCNTIFVDPPRA 302 Query: 303 GLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362 G+D AT+ +VQ Y ILYISCNPD+L +L L+ TH + R ALFDQFPYT HME GVLL Sbjct: 303 GIDPATLELVQGYERILYISCNPDTLKDNLQQLNQTHKVTRFALFDQFPYTDHMETGVLL 362 Query: 363 VRK 365 R+ Sbjct: 363 ERR 365 >gi|109900328|ref|YP_663583.1| tRNA (uracil-5-)-methyltransferase [Pseudoalteromonas atlantica T6c] gi|123064065|sp|Q15NK9|TRMA_PSEA6 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|109702609|gb|ABG42529.1| tRNA (uracil-5-)-methyltransferase [Pseudoalteromonas atlantica T6c] Length = 365 Score = 411 bits (1057), Expect = e-113, Method: Composition-based stats. Identities = 189/357 (52%), Positives = 264/357 (73%), Gaps = 1/357 (0%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTK 68 YEQQLA+KV+ ++Q F +P L+ F S P++YRMRAEF +WHDGD+L H+MFDQ TK Sbjct: 10 DYEQQLAQKVNSVQQAFKTFSMPALEAFSSAPLNYRMRAEFRMWHDGDNLDHVMFDQSTK 69 Query: 69 ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLD 128 ++ ++ F P S++IN +M+++++ ++ +LR KLFQIDYL++ +++ +VTL+YH+ L+ Sbjct: 70 QKYAVNQFPPASIVINEVMMKLLSLVKKNEVLRRKLFQIDYLSTLTNEILVTLVYHKPLE 129 Query: 129 DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFT 188 D W + A LR L +++I +IGRA K K+ LD+DYV E L V R ++QIENSFT Sbjct: 130 DEWLKEAKALRALLR-DEFKIDIIGRAKKQKVLLDKDYVIETLPVNDRLYTFKQIENSFT 188 Query: 189 QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248 QPNAG+N MLEW L T+ QGDLLELYCG GNFSL LA++F +VLA EI+K SV AA+ Sbjct: 189 QPNAGVNSKMLEWALDVTQDCQGDLLELYCGAGNFSLPLAQNFRQVLATEISKSSVAAAQ 248 Query: 249 YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDAT 308 NI N++ NV I+RMSS+EF QA+ ER F RL+ I++ Y +T+ VDPPRSGLDD T Sbjct: 249 DNIRLNNIENVTILRMSSEEFVQALNNERSFRRLEGINLQDYDCQTVLVDPPRSGLDDDT 308 Query: 309 VGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 + M++ Y +I+YISCNP++L +L++LS TH + R ALFDQFPYT H+E GV L ++ Sbjct: 309 LDMIKEYQNIVYISCNPETLNNNLAVLSETHNVVRFALFDQFPYTHHVESGVYLQKR 365 >gi|315125842|ref|YP_004067845.1| tRNA (uracil-5-)-methyltransferase [Pseudoalteromonas sp. SM9913] gi|315014356|gb|ADT67694.1| tRNA (uracil-5-)-methyltransferase [Pseudoalteromonas sp. SM9913] Length = 365 Score = 411 bits (1056), Expect = e-112, Method: Composition-based stats. Identities = 193/362 (53%), Positives = 258/362 (71%), Gaps = 1/362 (0%) Query: 4 TLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63 + QY+ QL EK R+ + F V L++F SEPI+YR RAEF +WHDGDDL+HIMF Sbjct: 5 NIDTTQYDAQLNEKEQRITEQFQRFGVKQLEVFSSEPINYRQRAEFRVWHDGDDLFHIMF 64 Query: 64 DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIY 123 DQQTK+++R+D F P + L+ +M M+ ++ +LR KLFQIDYL++ S + +V+L+Y Sbjct: 65 DQQTKDKIRVDTFDPAAPLVGEIMQVMIDNLKGCEVLRRKLFQIDYLSTLSGEILVSLLY 124 Query: 124 HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQI 183 H+ LD+ W L++ L ++ Y+I IGRA K K L D+V ERL V G+ LIY+Q+ Sbjct: 125 HKPLDEHWLTEINALKEKLSSQ-YKIDFIGRARKQKEKLGDDFVTERLMVNGQELIYQQV 183 Query: 184 ENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 ENSFTQPNA +N+ MLEW K + DLLELYCGNGNFS+ LA F++VLA EI+K S Sbjct: 184 ENSFTQPNAKVNIKMLEWAQELCKPLNNDLLELYCGNGNFSIALAGSFNKVLATEISKSS 243 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 V +A+YNIA N V N+ I+RMSS+EFTQAM+ ER F+RL ID+ SY +TI VDPPR+G Sbjct: 244 VHSAQYNIAQNQVTNLDIIRMSSEEFTQAMKGERTFSRLDGIDLSSYNCQTILVDPPRAG 303 Query: 304 LDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363 +D T +V Y +I+YISCNPD+L RDL L+ TH ++R A+FDQFPYT H+E GV L Sbjct: 304 MDTLTCDLVANYENIIYISCNPDTLERDLEHLTQTHEVKRFAIFDQFPYTHHIESGVFLQ 363 Query: 364 RK 365 +K Sbjct: 364 KK 365 >gi|332304646|ref|YP_004432497.1| tRNA (uracil-5-)-methyltransferase [Glaciecola agarilytica 4H-3-7+YE-5] gi|332171975|gb|AEE21229.1| tRNA (uracil-5-)-methyltransferase [Glaciecola agarilytica 4H-3-7+YE-5] Length = 365 Score = 410 bits (1055), Expect = e-112, Method: Composition-based stats. Identities = 189/357 (52%), Positives = 264/357 (73%), Gaps = 1/357 (0%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTK 68 Y++QLA+KVD + Q AF +PN+++F S ++YRMRAEF IWHDGD+L H+MFDQ TK Sbjct: 10 DYDKQLAQKVDSVEQSFAAFSMPNVEVFTSAALNYRMRAEFRIWHDGDNLDHVMFDQATK 69 Query: 69 ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLD 128 ++ ++ F P S++IN +M++++ ++ +LR KLFQIDYL++ +D+ +VTL+YH+ L+ Sbjct: 70 QKYSVNQFPPASVVINKVMVKLVPLLKDNEVLRRKLFQIDYLSTLTDEVLVTLVYHKPLE 129 Query: 129 DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFT 188 + W A LR L ++I LIGRA K K+ LD+DYV E L V R ++QIENSFT Sbjct: 130 EEWLIEATALRTVLREE-FKIDLIGRAKKQKVLLDKDYVLEALPVNERIYTFKQIENSFT 188 Query: 189 QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248 QPNAG+N MLEW L T+ +GDLLELYCG GNFSL LA++F +VLA EI+K SV AA+ Sbjct: 189 QPNAGVNSKMLEWALDVTQDCEGDLLELYCGAGNFSLPLAQNFKQVLATEISKSSVAAAQ 248 Query: 249 YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDAT 308 +NI N+++NV I+RMSS+EF QA+ ER F RL+ +++ Y +T+ VDPPRSGLDD T Sbjct: 249 HNIRLNNIDNVTILRMSSEEFVQALNNERSFRRLEGVNLQKYNCQTVLVDPPRSGLDDET 308 Query: 309 VGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 + MVQ Y +I+YISCNP++L +L++LS TH + R ALFDQFP+T H+E GV L ++ Sbjct: 309 LAMVQGYANIVYISCNPETLKDNLAVLSETHDVVRFALFDQFPFTHHVESGVFLQKR 365 >gi|294142953|ref|YP_003558931.1| tRNA (uracil-5-)-methyltransferase [Shewanella violacea DSS12] gi|293329422|dbj|BAJ04153.1| tRNA (uracil-5-)-methyltransferase [Shewanella violacea DSS12] Length = 365 Score = 410 bits (1054), Expect = e-112, Method: Composition-based stats. Identities = 190/363 (52%), Positives = 257/363 (70%), Gaps = 1/363 (0%) Query: 3 GTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIM 62 + Y+ QL EK +L Q+ F P L+ F SE +YRMR EF IWHDGDD+Y+ M Sbjct: 4 AAMDPTTYDAQLEEKRIKLEQIFTDFDTPRLETFGSETANYRMRCEFRIWHDGDDMYYYM 63 Query: 63 FDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122 FD+ ++R D F+P S LIN +M ++ ++ +LR +LFQID+L++ S + +V+L+ Sbjct: 64 FDKALDSKVRCDQFLPASSLINEMMPALIEELKPNTILRHRLFQIDFLSTLSGEILVSLL 123 Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182 YH+ LD W A L+D L A K+++ LIGRA K K+ D+D+V E L+V G L Y Q Sbjct: 124 YHKQLDQEWEAEAKSLKDRL-ASKFKVNLIGRARKQKLIFDKDFVVETLSVNGEQLHYHQ 182 Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 IENSFTQPN ++V MLEW + TK GDLLELYCGNGNFS+ LA++FDRVLA E+AKP Sbjct: 183 IENSFTQPNGKVSVKMLEWAIDVTKNSTGDLLELYCGNGNFSIALAQNFDRVLATELAKP 242 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302 SV++A+YNI N+++N++I+RMS+++FT AM ++R F RL+ ID+ SY TIFVDPPR+ Sbjct: 243 SVQSAQYNIEINNIDNLQIIRMSAEDFTDAMAKKRSFRRLEGIDLDSYNCNTIFVDPPRA 302 Query: 303 GLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362 GLD TV +VQ Y I+YISCNP++L +L+ L+ TH I R ALFDQFPYT HME GV L Sbjct: 303 GLDSNTVKLVQGYERIVYISCNPNTLIENLTELTKTHKITRFALFDQFPYTDHMESGVFL 362 Query: 363 VRK 365 +K Sbjct: 363 EKK 365 >gi|163749943|ref|ZP_02157188.1| tRNA (uracil-5-)-methyltransferase [Shewanella benthica KT99] gi|161330457|gb|EDQ01436.1| tRNA (uracil-5-)-methyltransferase [Shewanella benthica KT99] Length = 365 Score = 410 bits (1054), Expect = e-112, Method: Composition-based stats. Identities = 189/363 (52%), Positives = 256/363 (70%), Gaps = 1/363 (0%) Query: 3 GTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIM 62 + Y+ QL +K +L Q+ F P L++F SE HYRMR EF IWHDGDD+Y+ M Sbjct: 4 AAMDPKTYDAQLEKKRIKLEQIFTDFDTPRLEVFGSETAHYRMRCEFRIWHDGDDMYYYM 63 Query: 63 FDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122 FD+ ++R D F+P S LIN +M ++ ++ +LR +LFQID+L++ S + +V+L+ Sbjct: 64 FDKALDSKVRCDQFLPASSLINEMMPALIEELKPNTILRHRLFQIDFLSTLSGEILVSLL 123 Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182 YH+ LD W A L++ L A ++++ LIGRA K K+ D+D+V E L V G L Y Q Sbjct: 124 YHKQLDQQWEVEAKVLKEKL-ASRFKVNLIGRARKQKLIFDKDFVVESLNVNGEQLHYHQ 182 Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 IENSFTQPN + V MLEW + TK GDLLELYCGNGNFS+ LA++FDRVLA E+AKP Sbjct: 183 IENSFTQPNGKVAVKMLEWAIDVTKNSTGDLLELYCGNGNFSIALAQNFDRVLATELAKP 242 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302 SV++A+YNI N ++N++I+RMS+++FT AM ++R F RL+ ID+ SY TIFVDPPR+ Sbjct: 243 SVQSAQYNIEINKIDNLQIIRMSAEDFTDAMAKKRSFRRLEGIDLDSYNCNTIFVDPPRA 302 Query: 303 GLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362 GLD TV +VQ Y I+YISCNP++L +L+ L+ TH I R ALFDQFPYT HME GVLL Sbjct: 303 GLDSNTVKLVQGYERIVYISCNPNTLTENLAELTKTHNITRFALFDQFPYTDHMESGVLL 362 Query: 363 VRK 365 +K Sbjct: 363 EKK 365 >gi|71279320|ref|YP_267102.1| tRNA (uracil-5-)-methyltransferase [Colwellia psychrerythraea 34H] gi|123634093|sp|Q48A12|TRMA_COLP3 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|71145060|gb|AAZ25533.1| tRNA (uracil-5-)-methyltransferase [Colwellia psychrerythraea 34H] Length = 364 Score = 410 bits (1053), Expect = e-112, Method: Composition-based stats. Identities = 180/365 (49%), Positives = 261/365 (71%), Gaps = 1/365 (0%) Query: 1 MSGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60 M + D Y+ QL++K + ++ F +P ++ S P++YR RAEF +WH+GDDLY+ Sbjct: 1 MFSHIHPDNYDAQLSKKQQDMAKLFSDFNLPAPDLYPSVPLNYRQRAEFRVWHEGDDLYY 60 Query: 61 IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVT 120 IMFD +TKE+ R+D F S LIN M ++ATI+ + LR KLFQ+D+L++ S + +++ Sbjct: 61 IMFDSKTKEKFRVDDFPVASELINNAMKALLATIKDQRELRFKLFQVDFLSTLSGELLIS 120 Query: 121 LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIY 180 ++YH+ L+D W+ A +L+ L + +IGRA K KI +D+DYV E L V G+T +Y Sbjct: 121 MLYHKPLEDNWQIEAEKLKAQLSTI-APVDIIGRAKKQKIIVDKDYVMESLNVGGKTYVY 179 Query: 181 RQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240 +Q+ENSFTQPNAG+N ML W AT+ GDL+ELYCGNGNFS+ LA +F+RVL EI+ Sbjct: 180 QQVENSFTQPNAGVNEQMLLWAQQATQNAGGDLIELYCGNGNFSIALAENFERVLGTEIS 239 Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300 K SV +A+ NI+ N ++N+ IVRMSS+EF+QAM ER+F RL+D D+ +Y + T+ VDPP Sbjct: 240 KTSVRSAQINISENGIDNIDIVRMSSEEFSQAMNGERKFRRLEDFDLTTYNYDTVLVDPP 299 Query: 301 RSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360 R+GLD +V +V+ + I+YISCNP++L +L++L TH I++ ALFDQFPYT H+E GV Sbjct: 300 RAGLDRDSVELVRRFNKIIYISCNPETLKDNLALLVETHQIDKFALFDQFPYTDHIETGV 359 Query: 361 LLVRK 365 +L RK Sbjct: 360 ILTRK 364 >gi|119944400|ref|YP_942080.1| tRNA (uracil-5-)-methyltransferase [Psychromonas ingrahamii 37] gi|262827937|sp|A1SSL6|TRMA_PSYIN RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|119863004|gb|ABM02481.1| tRNA (uracil-5-)-methyltransferase [Psychromonas ingrahamii 37] Length = 365 Score = 409 bits (1052), Expect = e-112, Method: Composition-based stats. Identities = 201/359 (55%), Positives = 259/359 (72%), Gaps = 1/359 (0%) Query: 7 IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66 + YE LA K + L + F P L+ F S +HYRMRAE +WHDGD+LY+IMFD++ Sbjct: 8 PENYETLLAAKKEHLNKQFAIFNPPALECFASPKLHYRMRAELRVWHDGDELYYIMFDKK 67 Query: 67 TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL 126 TK++ R++ F P S LIN LM ++ ++ +LR KLFQID+L++ Q IV+L+YH+ Sbjct: 68 TKQKFRVEQFPPASELINNLMPVLLELVKSSEILRYKLFQIDFLSNLKGQVIVSLLYHKQ 127 Query: 127 LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS 186 LDD W A R++ L +++ I IGRA K KI LD DYV E L V G L Y+QIENS Sbjct: 128 LDDNWLVEAKRIKAEL-LKQFDINFIGRARKQKILLDYDYVIEELQVDGNKLFYQQIENS 186 Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246 FTQPNA + MLEW + T+ QGDLLELYCGNGNFSL LA++F++VLA EIAKPSVE+ Sbjct: 187 FTQPNAKVCEKMLEWAIDCTRDSQGDLLELYCGNGNFSLALAKNFNKVLATEIAKPSVES 246 Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306 A++N+A N +NNV ++RMS++EFTQA+ EREF RLK+I + Y+ TI VDPPRSGLDD Sbjct: 247 AQFNMAQNGINNVTVIRMSAEEFTQAINGEREFYRLKEITLSDYQCNTILVDPPRSGLDD 306 Query: 307 ATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 TV MVQ Y +ILYISCN D+L R+L +LS TH I+R ALFDQFPYT H E GV LV++ Sbjct: 307 ETVKMVQHYDNILYISCNADTLSRNLEVLSKTHEIKRFALFDQFPYTYHSEAGVYLVKR 365 >gi|212633111|ref|YP_002309636.1| tRNA (uracil-5-)-methyltransferase [Shewanella piezotolerans WP3] gi|212554595|gb|ACJ27049.1| tRNA (uracil-5-)-methyltransferase [Shewanella piezotolerans WP3] Length = 360 Score = 408 bits (1048), Expect = e-112, Method: Composition-based stats. Identities = 189/356 (53%), Positives = 257/356 (72%), Gaps = 1/356 (0%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69 Y+ QL K +L+Q+ F P L+ F SE HYRMRAEF +WH+G+DLY+ MFD++ Sbjct: 6 YDVQLEAKRVKLKQLFTDFDTPELESFSSETAHYRMRAEFRMWHEGEDLYYYMFDKELNS 65 Query: 70 RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDD 129 ++R D F+P S LIN +M ++ ++ +LR +LFQID+L++ S + +V+L+YH+ LD Sbjct: 66 KVRCDQFLPASELINKMMPVLVELLKPNTILRHRLFQIDFLSTLSGEILVSLLYHKQLDA 125 Query: 130 AWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQ 189 W E A L+ L ++ + + LIGRA K K+ D+D+V E L VAG+ L Y QIENSFTQ Sbjct: 126 EWEEQAKILKQTLSSQ-FNVNLIGRARKQKLIFDKDFVVESLNVAGKQLQYHQIENSFTQ 184 Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249 PN ++V MLEW + TK GDLLELYCGNGNFS+ LA++F+RVLA E+AKPSVE+A+Y Sbjct: 185 PNGKVSVKMLEWAIDVTKNSTGDLLELYCGNGNFSIALAQNFERVLATELAKPSVESAQY 244 Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309 NI NHV+N++I+RMS+++FT AM ++R + RL+ ID+ SY TIFVDPPR+GLD+ TV Sbjct: 245 NIKMNHVDNLQIIRMSAEDFTDAMAKKRSYRRLEGIDLDSYNCNTIFVDPPRAGLDENTV 304 Query: 310 GMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 +VQ Y I+YISCNP++L +L LS TH I R LFDQFPYT HME GV L +K Sbjct: 305 KLVQGYERIVYISCNPNTLLDNLKELSKTHNITRFVLFDQFPYTDHMESGVFLEKK 360 >gi|262831394|sp|B8CH56|TRMA_SHEPW RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT Length = 365 Score = 408 bits (1048), Expect = e-112, Method: Composition-based stats. Identities = 189/356 (53%), Positives = 257/356 (72%), Gaps = 1/356 (0%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69 Y+ QL K +L+Q+ F P L+ F SE HYRMRAEF +WH+G+DLY+ MFD++ Sbjct: 11 YDVQLEAKRVKLKQLFTDFDTPELESFSSETAHYRMRAEFRMWHEGEDLYYYMFDKELNS 70 Query: 70 RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDD 129 ++R D F+P S LIN +M ++ ++ +LR +LFQID+L++ S + +V+L+YH+ LD Sbjct: 71 KVRCDQFLPASELINKMMPVLVELLKPNTILRHRLFQIDFLSTLSGEILVSLLYHKQLDA 130 Query: 130 AWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQ 189 W E A L+ L ++ + + LIGRA K K+ D+D+V E L VAG+ L Y QIENSFTQ Sbjct: 131 EWEEQAKILKQTLSSQ-FNVNLIGRARKQKLIFDKDFVVESLNVAGKQLQYHQIENSFTQ 189 Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249 PN ++V MLEW + TK GDLLELYCGNGNFS+ LA++F+RVLA E+AKPSVE+A+Y Sbjct: 190 PNGKVSVKMLEWAIDVTKNSTGDLLELYCGNGNFSIALAQNFERVLATELAKPSVESAQY 249 Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309 NI NHV+N++I+RMS+++FT AM ++R + RL+ ID+ SY TIFVDPPR+GLD+ TV Sbjct: 250 NIKMNHVDNLQIIRMSAEDFTDAMAKKRSYRRLEGIDLDSYNCNTIFVDPPRAGLDENTV 309 Query: 310 GMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 +VQ Y I+YISCNP++L +L LS TH I R LFDQFPYT HME GV L +K Sbjct: 310 KLVQGYERIVYISCNPNTLLDNLKELSKTHNITRFVLFDQFPYTDHMESGVFLEKK 365 >gi|254229783|ref|ZP_04923190.1| tRNA (uracil-5-)-methyltransferase [Vibrio sp. Ex25] gi|151937682|gb|EDN56533.1| tRNA (uracil-5-)-methyltransferase [Vibrio sp. Ex25] Length = 337 Score = 401 bits (1030), Expect = e-109, Method: Composition-based stats. Identities = 188/336 (55%), Positives = 249/336 (74%), Gaps = 2/336 (0%) Query: 32 NLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMM 91 L++F S HYRMRAEF +WH+G+DLY+IMF+Q+T+E+ R+D F S LIN LM ++ Sbjct: 1 ELEVFESPEQHYRMRAEFRVWHEGEDLYYIMFNQETREKYRVDQFPAASRLINDLMPLLV 60 Query: 92 ATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQL 151 ++ LR KLFQ+D+L++ S + +V+L+YHR LD+ W E A L+ L+ + + + Sbjct: 61 EAMKDNDSLRRKLFQVDFLSTLSGEILVSLLYHRQLDEEWIENAKALKQRLNDEGFNLNI 120 Query: 152 IGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG 211 IGRA K KI LDRDYV E+L V G++ IY+Q+ENSFTQPN + MLEW + T+ G Sbjct: 121 IGRARKMKIVLDRDYVIEKLDVNGQSYIYQQVENSFTQPNGKVAEKMLEWAVDCTQESTG 180 Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271 DLLELYCGNGNFSL LA++FDRVLA E+AKPSV +A+YNIAAN ++NV+I+R+S++EFTQ Sbjct: 181 DLLELYCGNGNFSLALAQNFDRVLATELAKPSVVSAQYNIAANKIDNVQILRLSAEEFTQ 240 Query: 272 AMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYISCNPDSLC 329 A+ +REF RL+D +D+ SY TIFVDPPR+G+D T MVQ Y I+YISCNP++L Sbjct: 241 AIEGKREFRRLQDAGVDLKSYNCNTIFVDPPRAGMDADTCKMVQGYERIMYISCNPETLK 300 Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 +L IL TH + R ALFDQFPYT HME GVLL RK Sbjct: 301 ENLDILCETHNVTRFALFDQFPYTHHMEAGVLLERK 336 >gi|262372741|ref|ZP_06066020.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter junii SH205] gi|262312766|gb|EEY93851.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter junii SH205] Length = 361 Score = 400 bits (1027), Expect = e-109, Method: Composition-based stats. Identities = 178/365 (48%), Positives = 247/365 (67%), Gaps = 11/365 (3%) Query: 6 LIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF-- 63 + Y+QQL EKV+R+ F P L++F+S H+RMRAEF IWH DDL++ MF Sbjct: 1 MTVSYQQQLQEKVERITAQFAPFNPPALEVFQSPEQHFRMRAEFRIWHTEDDLFYAMFER 60 Query: 64 --DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTL 121 D + K +RID F IN LM ++ ++ P+L ++F+ D+L++ S + +VTL Sbjct: 61 AEDGKQKAVIRIDDFPIADSSINNLMPLLLEELKATPILSQRIFEADFLSTLSGEMLVTL 120 Query: 122 IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYR 181 IYHR LD W A L D L+ I+++GR+ K+ + DYV E+L V GRT Y+ Sbjct: 121 IYHRRLDAEWESAAKALADKLN-----IKIMGRSRGQKVIIGDDYVVEQLNVHGRTFKYK 175 Query: 182 QIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241 QIE+SFTQPNA + HMLEW A +G Q DLLELYCGNGNF+L L+ F RVLA E+AK Sbjct: 176 QIESSFTQPNAQVCQHMLEWACDAAEGAQKDLLELYCGNGNFTLPLSLKFKRVLATELAK 235 Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL--KDIDIHSYRFKTIFVDP 299 SV AA++NI N ++N+++ R+S++EFTQA + ER F RL +IDI SY F T+FVDP Sbjct: 236 SSVHAAQWNIEQNQIDNIQVARLSAEEFTQAYQGERTFRRLLEAEIDIQSYDFDTVFVDP 295 Query: 300 PRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359 PR+G+DD T+ ++Q + I+YISCNPD+L +L IL+ TH I++ A+FDQFP+T H+E G Sbjct: 296 PRAGIDDETLKLLQGFERIIYISCNPDTLHDNLKILTQTHRIQKFAMFDQFPFTHHVESG 355 Query: 360 VLLVR 364 VLL + Sbjct: 356 VLLEK 360 >gi|134035060|sp|Q5QVT1|TRMA_IDILO RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT Length = 366 Score = 399 bits (1026), Expect = e-109, Method: Composition-based stats. Identities = 179/361 (49%), Positives = 257/361 (71%), Gaps = 1/361 (0%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 + +Y QQLA+K DR+R+M F + +++F S HYRMRAEF +WH+GDDLY+IMF+ Sbjct: 6 IDTSEYPQQLAQKADRVREMFRPFHLNEVEVFESPASHYRMRAEFRVWHEGDDLYYIMFN 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 +T+E++R++ F+PGSLLIN LM E+++ ++ +LR KLFQ+D+LT+ + +AI++L+YH Sbjct: 66 PETREKIRMNEFIPGSLLINELMKELISLLKPNDVLRRKLFQVDFLTTTTGEAIISLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 R LDD W + AI+LR+AL + ++++IGRA K K L ++ V E + V G++ + Q E Sbjct: 126 RPLDDQWEQEAIQLREALTSI-AKVEVIGRARKQKRVLYKESVTEEVKVDGKSYLSLQTE 184 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA IN M+ W DLLELYCGNGNF+L LA +F+RVLA EI+K SV Sbjct: 185 NSFTQPNAIINQQMISWAKRHAGNNSHDLLELYCGNGNFTLPLAENFNRVLATEISKSSV 244 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AAR N N++ NV +VRMS++EF+ A+ E E R D +IHS+ +T+ VDPPR+GL Sbjct: 245 AAARENAELNNIKNVTVVRMSAEEFSAALSGELESKRAADAEIHSFDCQTVLVDPPRAGL 304 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D T+ +V Y I+YISCNP++L ++ LS++H + A+FDQFPYT H+E GV+L R Sbjct: 305 DKDTLKLVSQYQRIIYISCNPETLTENIHDLSSSHKVTAAAMFDQFPYTDHIETGVVLER 364 Query: 365 K 365 K Sbjct: 365 K 365 >gi|104783723|ref|YP_610221.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas entomophila L48] gi|122401746|sp|Q1I4J8|TRMA_PSEE4 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|95112710|emb|CAK17438.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas entomophila L48] Length = 361 Score = 399 bits (1026), Expect = e-109, Method: Composition-based stats. Identities = 170/366 (46%), Positives = 230/366 (62%), Gaps = 6/366 (1%) Query: 1 MSGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60 MS QY+ QLA K RLR+++ F P +F S HYR+RAEF +W +G ++ Sbjct: 1 MSAVFDPSQYDAQLAAKAARLRELLAPFGAPEPSVFDSPREHYRLRAEFRLWREGGQRHY 60 Query: 61 IMFDQQ-TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119 MF + + ID F S IN LM + A + L +LFQ+++LT+ + A+V Sbjct: 61 AMFAPGEKHKAILIDDFPIASQRINELMPRLKAAWQGNEDLNNRLFQVEFLTTLAGDAMV 120 Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179 TL YHR LD+AW A +L L+ + +IGR+ ++ + RDY E L +AGRT Sbjct: 121 TLCYHRPLDEAWEAAAQQLASELN-----VSVIGRSKGKRVVIGRDYAVENLDIAGRTFS 175 Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEI 239 YRQ E +FTQPN +N ML W A DLLELYCGNGNF+L LA +VLA EI Sbjct: 176 YRQPEGAFTQPNGAVNQKMLGWAFEAMGERDDDLLELYCGNGNFTLPLATRARQVLATEI 235 Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299 +K SV AA +N+ N V+NV++VR+S++E TQA+ R F RL+ ID+ SY F T+FVDP Sbjct: 236 SKTSVNAALHNLDENGVDNVRLVRLSAEELTQALNEVRPFRRLEGIDLKSYDFGTVFVDP 295 Query: 300 PRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359 PR+G+D T + + + ILYISCNP++L ++++ L TH IER ALFDQFPYT HME G Sbjct: 296 PRAGMDPDTCELTRRFERILYISCNPETLAQNIAQLQDTHRIERCALFDQFPYTHHMESG 355 Query: 360 VLLVRK 365 VLLVR+ Sbjct: 356 VLLVRR 361 >gi|221135408|ref|ZP_03561711.1| tRNA (uracil-5-)-methyltransferase [Glaciecola sp. HTCC2999] Length = 361 Score = 396 bits (1018), Expect = e-108, Method: Composition-based stats. Identities = 188/362 (51%), Positives = 258/362 (71%), Gaps = 4/362 (1%) Query: 7 IDQYEQQLAEKVDRLRQMMLAFQVP---NLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63 + Y QL+EK RL ++ F P N+ I+ S+ HYR RAEF +WHDGDDLYHIMF Sbjct: 1 MTDYASQLSEKNARLTSLLSPFTHPSNLNIDIYPSQASHYRQRAEFRVWHDGDDLYHIMF 60 Query: 64 DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIY 123 +Q+TK++ R+D+F SLLIN +M ++ I+ P+LR KLFQIDYL++ ++Q +V+++Y Sbjct: 61 NQETKQQYRVDHFPVASLLINQVMDALITRIKTIPILRDKLFQIDYLSATTNQIVVSMLY 120 Query: 124 HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQI 183 H+ L D W E L + ++ YQIQ IGRA K K ++ DYV E+L++ G+ ++ I Sbjct: 121 HKKLSDEWVEKINELHTEM-SKTYQIQFIGRAKKQKTIINHDYVIEKLSIHGKEYTFKHI 179 Query: 184 ENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 ENSFTQPNA +N HM+EWV + T+ I GDLLELYCG GNF++ L+ +FD V+A EI+K S Sbjct: 180 ENSFTQPNAEVNCHMIEWVASHTQSIAGDLLELYCGAGNFTIPLSDYFDNVMATEISKTS 239 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 V AA+ NIA N + N I+RMSS+EF A +ER + RL+ ID+ SY F T+ VDPPR+G Sbjct: 240 VNAAQDNIAYNDIQNCTILRMSSEEFVSAKNKERAYRRLEGIDLDSYDFTTVLVDPPRAG 299 Query: 304 LDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363 LD AT+ M+ Y +I+YISCNPD+L +L L+ THTIER ALFDQFP+T H+E GV+L Sbjct: 300 LDMATINMINQYEYIIYISCNPDTLAHNLQELTKTHTIERAALFDQFPFTHHIESGVILK 359 Query: 364 RK 365 R+ Sbjct: 360 RR 361 >gi|146305866|ref|YP_001186331.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas mendocina ymp] gi|166988119|sp|A4XQI3|TRMA_PSEMY RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|145574067|gb|ABP83599.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas mendocina ymp] Length = 362 Score = 395 bits (1016), Expect = e-108, Method: Composition-based stats. Identities = 168/357 (47%), Positives = 226/357 (63%), Gaps = 6/357 (1%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ-TK 68 Y+ QLAEK RL +++ F P ++F S HYR+RAEF +W + ++ MF Sbjct: 11 YDAQLAEKQQRLIELLAPFAAPEPEVFDSPREHYRLRAEFRLWREDGQRHYAMFAPGDKH 70 Query: 69 ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLD 128 + +D F SL IN LM + A R L KLFQ+++LT+ + A++TL YHR LD Sbjct: 71 TPILLDDFPIASLRINELMPRLRAAWRASEALSFKLFQVEFLTTLAGDALITLAYHRPLD 130 Query: 129 DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFT 188 +AW+ A +L L+ + L+GR+ ++ + RDYV+E LTVAGR YRQ E +FT Sbjct: 131 EAWQAAAEKLASELN-----VSLVGRSRGQRLVIGRDYVEEELTVAGRRFRYRQPEGAFT 185 Query: 189 QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248 QPN + ML W A DLLELYCGNGNF+L LA RVLA EI+K SV AA Sbjct: 186 QPNGAVCEKMLGWAYEALGERDDDLLELYCGNGNFTLPLATRVRRVLATEISKTSVNAAL 245 Query: 249 YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDAT 308 N+A N VNNV++VR+S++E TQA+ R F RL ID+ SY F ++FVDPPR+G+D T Sbjct: 246 ANLADNGVNNVELVRLSAEELTQALNEVRPFRRLAGIDLKSYDFGSVFVDPPRAGMDPDT 305 Query: 309 VGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 + + + ILYISCNP++L +++ LS TH + R ALFDQFPYT HME GVLL R+ Sbjct: 306 CELTRRFERILYISCNPETLAANIAQLSDTHQVTRCALFDQFPYTHHMEAGVLLERR 362 >gi|89092512|ref|ZP_01165465.1| tRNA (uracil-5-)-methyltransferase [Oceanospirillum sp. MED92] gi|89083024|gb|EAR62243.1| tRNA (uracil-5-)-methyltransferase [Oceanospirillum sp. MED92] Length = 362 Score = 395 bits (1016), Expect = e-108, Method: Composition-based stats. Identities = 181/360 (50%), Positives = 246/360 (68%), Gaps = 6/360 (1%) Query: 7 IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66 + YE QL EK + Q F +P +++F S HYRMR EF +WHD DDLY++MF++ Sbjct: 8 PENYESQLVEKKTKTAQQFAEFDLPEIEVFESPRSHYRMRCEFRVWHDEDDLYYVMFEKG 67 Query: 67 -TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHR 125 R+RID+ S I+ +M E++ I+ +LR KLFQID+L++ S + +VTL+YHR Sbjct: 68 NKHARIRIDHCPMVSERIHNVMFELLEAIKPSEVLRRKLFQIDFLSTLSGELLVTLLYHR 127 Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIEN 185 +D+ W E A L++ K+ IQLIGR+ KTKI LD+D+V E L V G Y+Q+EN Sbjct: 128 PIDEVWAEEARVLKE-----KFNIQLIGRSRKTKILLDQDFVVETLNVKGGEFHYKQVEN 182 Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 SF+QPNA + HM+ W + AT+G GD++ELYCGNGNF+L LA++F RV+A EI+K SV Sbjct: 183 SFSQPNAEVCQHMINWAIDATEGAGGDMVELYCGNGNFTLPLAQNFRRVVATEISKTSVR 242 Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD 305 AA+YNI N V NV +VR+SS+EF+Q + E R KD+ + F T+ VDPPRSGLD Sbjct: 243 AAQYNIEVNGVENVDVVRISSEEFSQVLSGAVEKRRTKDLGLKECNFTTVLVDPPRSGLD 302 Query: 306 DATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 D TV VQ Y +ILYISCNP++L +L ++ TH +ER A+FDQFPYT H+E GV L RK Sbjct: 303 DDTVKQVQNYDNILYISCNPETLKTNLEEITKTHKLERFAIFDQFPYTDHLESGVFLTRK 362 >gi|313667944|ref|YP_004048228.1| tRNA (uracil-5-)-methyltransferase [Neisseria lactamica ST-640] gi|313005406|emb|CBN86840.1| tRNA (uracil-5-)-methyltransferase [Neisseria lactamica 020-06] Length = 367 Score = 395 bits (1015), Expect = e-108, Method: Composition-based stats. Identities = 174/369 (47%), Positives = 241/369 (65%), Gaps = 11/369 (2%) Query: 7 IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66 ++ Y QQL +K DRL+ + VP +++ S HYRMRAEF IWH+G ++++ MF++ Sbjct: 1 MNDYTQQLQDKKDRLKTLFADLDVPEWEVYESPDKHYRMRAEFRIWHEGGEMFYAMFEKG 60 Query: 67 TK----ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122 K +R D F S +N LM E++A LR + + +++L++ + +VT+I Sbjct: 61 QKAGGASLIRCDRFDAASEAVNRLMPELIALAAQSAELRNRWYAVEFLSTLGGEMLVTMI 120 Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182 YH+ LDD W A L+ L I +IGR+ KI L +DYV E L V R YRQ Sbjct: 121 YHKRLDDEWIRAAQALQQQL-----DISVIGRSRGQKIVLKQDYVTETLKVGNRDFRYRQ 175 Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 IE SFTQPNA + MLEW A +G+ GDLLELYCGNGNF+L L+ F+RVLA EI+K Sbjct: 176 IEGSFTQPNAAVCQKMLEWACGAAEGLDGDLLELYCGNGNFTLPLSEKFERVLATEISKT 235 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPP 300 SV AA++NI AN + N+KI R+S++EFT+A +REF RLK+ I + Y F TIFVDPP Sbjct: 236 SVSAAQWNIEANRIGNIKITRLSAEEFTEAYTGKREFKRLKEGGIALADYAFSTIFVDPP 295 Query: 301 RSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360 R+G+D T+ +V + +I+YISCNP++L +L L+ THT+ER ALFDQFP+T H+E GV Sbjct: 296 RAGIDGETLKLVSQFDNIIYISCNPETLRANLDTLAQTHTVERAALFDQFPFTPHIESGV 355 Query: 361 LLVRKPSGW 369 LL +K G Sbjct: 356 LLKKKILGK 364 >gi|146281305|ref|YP_001171458.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas stutzeri A1501] gi|166988121|sp|A4VI15|TRMA_PSEU5 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|145569510|gb|ABP78616.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas stutzeri A1501] Length = 362 Score = 395 bits (1014), Expect = e-108, Method: Composition-based stats. Identities = 172/362 (47%), Positives = 235/362 (64%), Gaps = 6/362 (1%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L QY QLAEK RL +++ F P ++F S HYR+RAEF +W +G ++ MF+ Sbjct: 6 LDPAQYAAQLAEKAARLEELLAPFDAPAAEVFDSPREHYRLRAEFRLWREGGQRHYAMFE 65 Query: 65 QQTKER-MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIY 123 Q K + + ID F S IN LM ++ A + +L KLFQ+++LT+ S A++TL Y Sbjct: 66 QGDKHKAILIDDFPIASRRINELMPQLKAAWQASEVLSFKLFQVEFLTTLSGDALITLAY 125 Query: 124 HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQI 183 HR LD+AW+ A +L L + L+GR+ +I + RDYV+E+L VAGR+ YRQ Sbjct: 126 HRPLDEAWQAEAEQLAADL-----GVSLVGRSKGKRIVIGRDYVEEQLVVAGRSFRYRQP 180 Query: 184 ENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 E +FTQPN + ML W A DLLELYCGNGNF+L LA RVLA EI+K S Sbjct: 181 EGAFTQPNGEVCQKMLNWAHEALGERDDDLLELYCGNGNFTLPLATRVRRVLATEISKTS 240 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 V AA NI N ++N+++VR+S++E TQA+ R F RL ID+ SY F ++FVDPPR+G Sbjct: 241 VNAALANIEDNGLDNIELVRLSAEELTQALNEVRPFRRLAGIDLKSYSFGSVFVDPPRAG 300 Query: 304 LDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363 +D T + + + ILYISCNP++L ++++ L+ TH IER ALFDQFPYT HME GVLLV Sbjct: 301 MDPDTCELTRRFERILYISCNPETLAQNIAQLADTHRIERCALFDQFPYTHHMEAGVLLV 360 Query: 364 RK 365 R+ Sbjct: 361 RR 362 >gi|50084803|ref|YP_046313.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter sp. ADP1] gi|115305867|sp|Q6FBS0|TRMA_ACIAD RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|49530779|emb|CAG68491.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter sp. ADP1] Length = 361 Score = 395 bits (1014), Expect = e-108, Method: Composition-based stats. Identities = 177/364 (48%), Positives = 240/364 (65%), Gaps = 11/364 (3%) Query: 6 LIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF-- 63 + Y+QQL K++R+ F P L++F S H+RMRAEF IWH +DL++ MF Sbjct: 1 MSQTYQQQLQSKIERITHQFAEFNPPALEVFESPEQHFRMRAEFRIWHTDNDLFYAMFER 60 Query: 64 --DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTL 121 D + KE +R+D F IN LM ++ ++ P L ++F+ D+LT+ S + +VTL Sbjct: 61 NEDGKQKEVIRVDEFPIADQSINQLMPRLLEELKANPTLSQRIFEADFLTTLSGEMLVTL 120 Query: 122 IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYR 181 IYHR LD W A L + L+ I+++GR+ K+ + DYV E+L V GRT Y+ Sbjct: 121 IYHRKLDTEWESAAKALAEKLN-----IKIMGRSRGQKVIIGDDYVVEQLNVHGRTFKYK 175 Query: 182 QIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241 QIE+SFTQPNA + ML W +G DLLELYCGNGNF+L L+ HF RVLA E+AK Sbjct: 176 QIESSFTQPNAEVCQKMLTWACDVIQGSNQDLLELYCGNGNFTLPLSLHFRRVLATELAK 235 Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDP 299 SV AA++NI N + N++I R+S++EFTQA + EREF RL++ IDI SY F TIFVDP Sbjct: 236 SSVYAAQWNIEQNQIENIQIARLSAEEFTQAYQGEREFRRLQEANIDIQSYEFDTIFVDP 295 Query: 300 PRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359 PR+G+DD T+ +++ + ILYISCNPD+L +L LS TH I R ALFDQFP+T H+E G Sbjct: 296 PRAGIDDETLKLLKGFKRILYISCNPDTLYNNLKTLSQTHKITRFALFDQFPFTHHVESG 355 Query: 360 VLLV 363 VLL Sbjct: 356 VLLE 359 >gi|260550065|ref|ZP_05824279.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter sp. RUH2624] gi|260406820|gb|EEX00299.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter sp. RUH2624] Length = 361 Score = 394 bits (1013), Expect = e-107, Method: Composition-based stats. Identities = 169/365 (46%), Positives = 244/365 (66%), Gaps = 11/365 (3%) Query: 6 LIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ 65 + Y QQL K+DR+ F P L++F S H+RMRAEF IWH D+++ MF++ Sbjct: 1 MTSSYRQQLQAKIDRITTQFSEFTPPTLEVFESPEQHFRMRAEFRIWHTESDMFYAMFER 60 Query: 66 ----QTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTL 121 + K +RID F IN LM ++A ++ EPLL +LF++D+L + S + +VTL Sbjct: 61 NDEDKQKTVVRIDEFPIADKSINDLMPSLLAELKAEPLLSQRLFEVDFLATLSGEMLVTL 120 Query: 122 IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYR 181 IYHR L+ W + A L + L+ I+++GR+ K+ + D+V E ++ RT Y+ Sbjct: 121 IYHRKLNQEWEQSAKALAEKLN-----IKIMGRSRGQKVVIGDDFVVEEFELSNRTFKYK 175 Query: 182 QIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241 QIE+SFTQPNA + ML+W A +G + LLELYCGNGNF+L L+ F+RVLA E+AK Sbjct: 176 QIESSFTQPNAQVCKKMLQWACDAAEGSKKHLLELYCGNGNFTLPLSLKFERVLATELAK 235 Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDP 299 SV AA++NI N ++N+++ R+S++EFTQA + EREF RL++ IDI SY F T+FVDP Sbjct: 236 SSVYAAQWNIEQNQIDNIQVARLSAEEFTQAYQGEREFRRLQEANIDIRSYDFDTVFVDP 295 Query: 300 PRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359 PR+G+DD T+ ++Q + I+YISCNPD+L +L L+ TH + + ALFDQFPYT H+E G Sbjct: 296 PRAGIDDETLKLLQGFERIIYISCNPDTLYENLKTLTKTHRVTKFALFDQFPYTHHVESG 355 Query: 360 VLLVR 364 VLL + Sbjct: 356 VLLEK 360 >gi|261378870|ref|ZP_05983443.1| tRNA (uracil-5-)-methyltransferase [Neisseria cinerea ATCC 14685] gi|269144685|gb|EEZ71103.1| tRNA (uracil-5-)-methyltransferase [Neisseria cinerea ATCC 14685] Length = 367 Score = 393 bits (1010), Expect = e-107, Method: Composition-based stats. Identities = 172/365 (47%), Positives = 239/365 (65%), Gaps = 11/365 (3%) Query: 7 IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66 ++ Y QQL K D L+ + VP +++ S HYRMRAEF IWH+G ++++ MF++ Sbjct: 1 MNDYTQQLQGKKDYLKTLFAGLDVPEWEVYESPDKHYRMRAEFRIWHEGGEMFYAMFEKG 60 Query: 67 TK----ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122 K +R D F S +N LM E++A LR + + +++L++ S + +VT+I Sbjct: 61 QKASGASLIRCDRFDAASEAVNCLMPELIAVAAQSAELRNRWYAVEFLSTLSGEMLVTMI 120 Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182 YH+ LDD W A L+ L I +IGR+ KI L +DYV E L V R YRQ Sbjct: 121 YHKRLDDEWIRAAQALQQQL-----DISVIGRSRGQKIVLKQDYVTETLKVGNRDFHYRQ 175 Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 IE FTQPNA + MLEW A +G+ GDLLELYCGNGNF+L L+ F+RVLA EI+K Sbjct: 176 IEGGFTQPNAAVCQKMLEWACGAAEGLGGDLLELYCGNGNFTLPLSEKFERVLATEISKT 235 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPP 300 SV AA++NI AN + N+KI R+S++EFT+A +REF RLK+ I + Y F TIFVDPP Sbjct: 236 SVGAAQWNIEANGIGNIKIARLSAEEFTEAYTGKREFTRLKEGGIALTDYAFSTIFVDPP 295 Query: 301 RSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360 R+G+D+ T+ +V + +I+YISCNP++L +L L+ THT+ER ALFDQFP+T H+E GV Sbjct: 296 RAGIDEETLKLVSQFDNIIYISCNPETLRANLDTLAETHTVERAALFDQFPFTHHIESGV 355 Query: 361 LLVRK 365 LL +K Sbjct: 356 LLKKK 360 >gi|261379800|ref|ZP_05984373.1| tRNA (uracil-5-)-methyltransferase [Neisseria subflava NJ9703] gi|284797485|gb|EFC52832.1| tRNA (uracil-5-)-methyltransferase [Neisseria subflava NJ9703] Length = 360 Score = 393 bits (1009), Expect = e-107, Method: Composition-based stats. Identities = 172/362 (47%), Positives = 246/362 (67%), Gaps = 11/362 (3%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTK- 68 Y+QQLA+K L+Q+ P +++F S HYRMRAEF IWH+G ++++ MF++ K Sbjct: 4 YQQQLADKKQYLQQLFQGLDFPEIEVFESPEQHYRMRAEFRIWHEGGEMFYAMFERGQKA 63 Query: 69 ---ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHR 125 +R D F S INALM +++ P L+ + + +++L++ S + +VT+IYH+ Sbjct: 64 SGASLIRCDQFPAASESINALMPKLIEAASNHPELKNRWYAVEFLSTLSGEMLVTMIYHK 123 Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIEN 185 L++AW++ A L A I +IGR+ KI L +D+V E LTV G+T YRQIE Sbjct: 124 KLNEAWQQAAQEL-----AHNLGIHIIGRSRGQKIVLSQDFVTEALTVNGKTFRYRQIEG 178 Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 SFTQPNA + ML W A K + DLLELYCGNGNF+L L++HF++VLA E++K SV Sbjct: 179 SFTQPNAQVCQKMLTWACDAAKNLGKDLLELYCGNGNFTLPLSQHFNQVLATEVSKTSVN 238 Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSG 303 AA++NI AN + N+KI R+S++EFT+A + REF RL++ ID+ +Y F TIFVDPPR+G Sbjct: 239 AAQWNIEANQITNLKIARLSAEEFTEAYTQNREFRRLQEQGIDLKNYDFSTIFVDPPRAG 298 Query: 304 LDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363 +DD T+ +V + ++LYISCNP++L +L L THTIER ALFDQFP+T H+E GV L Sbjct: 299 VDDETLKLVARFDNVLYISCNPETLRANLDTLCQTHTIERAALFDQFPFTHHIESGVWLK 358 Query: 364 RK 365 +K Sbjct: 359 KK 360 >gi|327479464|gb|AEA82774.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas stutzeri DSM 4166] Length = 362 Score = 393 bits (1009), Expect = e-107, Method: Composition-based stats. Identities = 171/362 (47%), Positives = 235/362 (64%), Gaps = 6/362 (1%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L QY+ QLAEK RL +++ F P ++F S HYR+RAEF +W + ++ MF+ Sbjct: 6 LDPAQYDAQLAEKAARLEELLAPFDAPAAEVFDSPREHYRLRAEFRLWREDGQRHYAMFE 65 Query: 65 QQTKER-MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIY 123 Q K + + ID F S IN LM ++ A + +L KLFQ+++LT+ S A++TL Y Sbjct: 66 QGDKHKAILIDDFPIASRRINELMPQLKAAWQASEVLSFKLFQVEFLTTLSGDALITLAY 125 Query: 124 HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQI 183 HR LD+AW+ A +L L + L+GR+ +I + RDYV+E+L VAGR+ YRQ Sbjct: 126 HRPLDEAWQAEAEQLAADL-----GVSLVGRSKGKRIVIGRDYVEEQLVVAGRSFRYRQP 180 Query: 184 ENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 E +FTQPN + ML W A DLLELYCGNGNF+L LA RVLA EI+K S Sbjct: 181 EGAFTQPNGEVCQKMLNWTHEALGERDDDLLELYCGNGNFTLPLATRVRRVLATEISKTS 240 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 V AA NI N ++N+++VR+S++E TQA+ R F RL ID+ SY F ++FVDPPR+G Sbjct: 241 VNAALANIEDNGLDNIELVRLSAEELTQALNEVRPFRRLAGIDLKSYSFGSVFVDPPRAG 300 Query: 304 LDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363 +D T + + + ILYISCNP++L ++++ L+ TH IER ALFDQFPYT HME GVLLV Sbjct: 301 MDPDTCELTRRFERILYISCNPETLAQNIAQLADTHRIERCALFDQFPYTHHMEAGVLLV 360 Query: 364 RK 365 R+ Sbjct: 361 RR 362 >gi|325121978|gb|ADY81501.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter calcoaceticus PHEA-2] Length = 361 Score = 393 bits (1009), Expect = e-107, Method: Composition-based stats. Identities = 170/365 (46%), Positives = 240/365 (65%), Gaps = 11/365 (3%) Query: 6 LIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF-- 63 + Y QQL K++R+ F P L++F S H+RMRAEF IWH +D+++ MF Sbjct: 1 MTSSYRQQLQAKIERITTQFSEFTPPTLEVFESPEQHFRMRAEFRIWHTENDMFYAMFER 60 Query: 64 --DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTL 121 D + K +RID F IN LM +++ ++ EP L +LF+ D+L + S + +VTL Sbjct: 61 NDDDKQKTVVRIDEFPIADHSINDLMPKLLEELKAEPKLSNRLFEADFLATLSGEMLVTL 120 Query: 122 IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYR 181 IYHR LD W + A L D L I+++GR+ KI + D+V E + R+ Y+ Sbjct: 121 IYHRKLDQEWEQAAKALADKL-----DIKIMGRSRGQKIVIGDDFVVEEFELLNRSFKYK 175 Query: 182 QIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241 QIE+SFTQPNA + ML+W A +G + LLELYCGNGNF+L L+ F+RVLA E+AK Sbjct: 176 QIESSFTQPNAQVCKKMLQWACDAAEGSKKHLLELYCGNGNFTLPLSLKFERVLATELAK 235 Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDP 299 SV AA++NI N ++N+++ R+S++EFTQA + EREF RL++ IDI SY F T+FVDP Sbjct: 236 SSVYAAQWNIEQNQIDNIQVARLSAEEFTQAYQGEREFRRLQEANIDIQSYDFDTVFVDP 295 Query: 300 PRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359 PR+G+DD T+ ++Q + I+YISCNPD+L +L LS TH + + ALFDQFPYT H+E G Sbjct: 296 PRAGIDDETLKLLQGFERIIYISCNPDTLYENLKTLSQTHRVTKFALFDQFPYTHHVESG 355 Query: 360 VLLVR 364 VLL + Sbjct: 356 VLLEK 360 >gi|261399937|ref|ZP_05986062.1| tRNA (uracil-5-)-methyltransferase [Neisseria lactamica ATCC 23970] gi|269210388|gb|EEZ76843.1| tRNA (uracil-5-)-methyltransferase [Neisseria lactamica ATCC 23970] Length = 367 Score = 392 bits (1008), Expect = e-107, Method: Composition-based stats. Identities = 173/369 (46%), Positives = 239/369 (64%), Gaps = 11/369 (2%) Query: 7 IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66 + Y QQL +K DRL+ + VP +++ S HYRMRAEF IWH+G ++++ MF++ Sbjct: 1 MSDYTQQLQDKKDRLKTLFAGLDVPEWEVYESLDKHYRMRAEFRIWHEGGEMFYAMFEKG 60 Query: 67 TK----ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122 K +R D F S +N LM E++A LR + + +++L++ + +VT+I Sbjct: 61 QKAGGASLIRCDRFDAASEAVNRLMPELIALAAQSAELRNRWYAVEFLSTLGGEMLVTMI 120 Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182 YH+ LDD W A L+ L I +IGR+ KI L +DYV E L V R YRQ Sbjct: 121 YHKRLDDEWIRAAQALQQQL-----DISVIGRSRGQKIVLKQDYVTETLKVGNRDFHYRQ 175 Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 IE FTQPNA + MLEW A +G+ GDLLELYCGNGNF+L L+ F+RVLA EI+K Sbjct: 176 IEGGFTQPNAAVCQKMLEWACGAAEGLGGDLLELYCGNGNFTLPLSEKFERVLATEISKT 235 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPP 300 SV AA++NI AN + N+KI R+S++EFT+A +REF RLK+ I + Y F TIFVDPP Sbjct: 236 SVGAAQWNIEANGIGNIKIARLSAEEFTEAYTGKREFKRLKEGGIALADYAFSTIFVDPP 295 Query: 301 RSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360 R+G+D T+ +V + +I+YISCNP++L +L L+ THT+ER ALFDQFP+T H+E GV Sbjct: 296 RAGIDGETLKLVSQFDNIIYISCNPETLRANLDTLAQTHTVERAALFDQFPFTPHIESGV 355 Query: 361 LLVRKPSGW 369 LL +K G Sbjct: 356 LLKKKILGK 364 >gi|330501841|ref|YP_004378710.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas mendocina NK-01] gi|328916127|gb|AEB56958.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas mendocina NK-01] Length = 362 Score = 392 bits (1007), Expect = e-107, Method: Composition-based stats. Identities = 166/357 (46%), Positives = 226/357 (63%), Gaps = 6/357 (1%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ-TK 68 Y+ QLAEK RL +++ F P ++F S HYRMRAEF +W + ++ MF Sbjct: 11 YDAQLAEKKARLVELLAPFAAPEPEVFDSPREHYRMRAEFRLWREDGQRHYAMFAPGDKH 70 Query: 69 ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLD 128 + +D F SL IN LM + A + L KLFQ+++LT+ + A++TL YHR LD Sbjct: 71 TPILLDDFPIASLRINELMPRLRAAWQASEALSFKLFQVEFLTTLAGDALITLAYHRPLD 130 Query: 129 DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFT 188 +AW+ A +L L+ + L+GR+ ++ + RDYV+E L+VAGRT YRQ E +FT Sbjct: 131 EAWQAEAEKLAAELN-----VNLVGRSRGQRLVIGRDYVEEALSVAGRTFRYRQPEGAFT 185 Query: 189 QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248 QPN + ML W DLLELYCGNGNF+L LA RVLA EI+K SV AA Sbjct: 186 QPNGRVCEKMLGWAHDVLGERDDDLLELYCGNGNFTLPLATRVRRVLATEISKTSVNAAL 245 Query: 249 YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDAT 308 N+A N V+NV++VR+S++E TQA+ R F RL ID+ SY F ++FVDPPR+G+D T Sbjct: 246 ANLADNGVDNVELVRLSAEELTQALNEVRPFRRLAGIDLKSYDFGSVFVDPPRAGMDPDT 305 Query: 309 VGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 + + + ILYISCNP++L +++ LS TH + R ALFDQFPYT HME GVLL R+ Sbjct: 306 CELTRRFQRILYISCNPETLAANIAQLSDTHKVTRSALFDQFPYTHHMEAGVLLERR 362 >gi|121635320|ref|YP_975565.1| tRNA (uracil-5-)-methyltransferase [Neisseria meningitidis FAM18] gi|262827905|sp|A1KV88|TRMA_NEIMF RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|262831406|sp|A9M1Q1|TRMA_NEIM0 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|120867026|emb|CAM10789.1| tRNA (uracil-5-)-methyltransferase [Neisseria meningitidis FAM18] gi|325132825|gb|EGC55505.1| tRNA (uracil-5-)-methyltransferase [Neisseria meningitidis M6190] gi|325138728|gb|EGC61280.1| tRNA (uracil-5-)-methyltransferase [Neisseria meningitidis ES14902] gi|325198777|gb|ADY94233.1| tRNA (uracil-5-)-methyltransferase [Neisseria meningitidis G2136] Length = 367 Score = 392 bits (1007), Expect = e-107, Method: Composition-based stats. Identities = 172/369 (46%), Positives = 241/369 (65%), Gaps = 11/369 (2%) Query: 7 IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66 + Y QQL +K D L+ + VP +++ S HYRMRAEF IWH+G ++++ MF++ Sbjct: 1 MSDYTQQLQDKKDHLKTLFAGLDVPEWEVYESPDKHYRMRAEFRIWHEGGEMFYAMFEKG 60 Query: 67 TK----ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122 K +R D F S +N LM E++A LR + + +++L++ S + +VT+I Sbjct: 61 QKAGGASLIRCDRFEAASEAVNRLMPELIAVAAQSAELRNRWYAVEFLSTLSGEMLVTMI 120 Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182 YH+ LD+ W + A ++ I +IGR+ KI L +DYV E L V R YRQ Sbjct: 121 YHKRLDNEWMQAAQA-----LQQQLDISVIGRSRGQKIVLKQDYVTETLKVGNRDFRYRQ 175 Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 IE SFTQPNA + MLEW A +G+ GDLLELYCGNGNF+L L+ F+RVLA EI+K Sbjct: 176 IEGSFTQPNAAVCQKMLEWACGAAEGLDGDLLELYCGNGNFTLPLSEKFERVLATEISKT 235 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPP 300 SV AA++NI AN + N+KI R+S++EFT+A +REF RLKD I + Y F TIFVDPP Sbjct: 236 SVSAAQWNIEANRIGNIKIARLSAEEFTEAYTGKREFKRLKDGGIALTDYAFSTIFVDPP 295 Query: 301 RSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360 R+G+D+ T+ +V + +I+YISCNP++L +L L+ THT+ER ALFDQFP+T H+E GV Sbjct: 296 RAGIDEETLKLVSQFDNIIYISCNPETLRTNLDTLAETHTVERAALFDQFPFTHHIESGV 355 Query: 361 LLVRKPSGW 369 LL +K G Sbjct: 356 LLKKKILGK 364 >gi|299770439|ref|YP_003732465.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter sp. DR1] gi|298700527|gb|ADI91092.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter sp. DR1] Length = 361 Score = 392 bits (1006), Expect = e-107, Method: Composition-based stats. Identities = 170/365 (46%), Positives = 241/365 (66%), Gaps = 11/365 (3%) Query: 6 LIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF-- 63 + Y QQL K+DR+ F P L++F S H+RMRAEF IWH +D+++ MF Sbjct: 1 MTSSYHQQLQTKIDRITAQFSEFTPPTLEVFESPEQHFRMRAEFRIWHTENDMFYAMFER 60 Query: 64 --DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTL 121 D + K +RID F IN LM +++ ++ EP L +++F+ D+L + S + +VTL Sbjct: 61 NDDDKQKTVVRIDEFPIADQSINDLMPKLLEELKAEPKLSSRIFEADFLATLSGEMLVTL 120 Query: 122 IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYR 181 IYHR LD W + A L + L I+++GR+ KI + D+V E + R+ Y+ Sbjct: 121 IYHRKLDQEWEQAAKALAEKL-----DIKIMGRSRGQKIIIGNDFVVEEFELLNRSFKYK 175 Query: 182 QIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241 QIE+SFTQPNA + ML+W A +G + LLELYCGNGNF+L L+ F+RVLA E+AK Sbjct: 176 QIESSFTQPNAQVCKKMLQWACDAAEGSKKHLLELYCGNGNFTLPLSLKFERVLATELAK 235 Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDP 299 SV AA++NI N ++N+++ R+S++EFTQA + EREF RL++ IDI SY F T+FVDP Sbjct: 236 SSVYAAQWNIEQNQIDNIQVARLSAEEFTQAYQGEREFRRLQEANIDIQSYDFDTVFVDP 295 Query: 300 PRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359 PR+G+DD T+ ++Q + I+YISCNPD+L +L IL TH I + ALFDQFPYT H+E G Sbjct: 296 PRAGIDDETLKLLQGFERIIYISCNPDTLYENLKILGLTHRITKFALFDQFPYTHHVESG 355 Query: 360 VLLVR 364 VLL + Sbjct: 356 VLLEK 360 >gi|239502231|ref|ZP_04661541.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter baumannii AB900] Length = 361 Score = 392 bits (1006), Expect = e-107, Method: Composition-based stats. Identities = 169/365 (46%), Positives = 241/365 (66%), Gaps = 11/365 (3%) Query: 6 LIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF-- 63 + Y QQL K+DR+ F P L++F S H+RMRAEF IWH +D+++ MF Sbjct: 1 MTSSYRQQLQAKIDRITTQFSEFTPPTLEVFESPEQHFRMRAEFRIWHTENDMFYAMFER 60 Query: 64 --DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTL 121 D + K +RID F IN LM ++A ++ LL +LF+ID+L + S + +VTL Sbjct: 61 NDDGKQKTVVRIDEFPIADKSINDLMPLLLAELKANSLLSQRLFEIDFLATLSGEMLVTL 120 Query: 122 IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYR 181 IYHR L+ W + A L + L+ I+++GR+ KI + D+V E + R+ Y+ Sbjct: 121 IYHRKLNQEWEQAAKALAEKLN-----IKIMGRSRGQKIVIGDDFVVEEFELLNRSFKYK 175 Query: 182 QIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241 QIE+SFTQPNA + ML+W A +G + LLELYCGNGNF+L L+ F+RVLA E+AK Sbjct: 176 QIESSFTQPNAQVCKKMLQWACDAAEGSKKHLLELYCGNGNFTLPLSLKFERVLATELAK 235 Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK--DIDIHSYRFKTIFVDP 299 SV AA++NI N ++N+++ R+S++EFTQA + EREF RL+ DIDI SY F T+FVDP Sbjct: 236 SSVYAAQWNIEQNQIDNIQVARLSAEEFTQAYQGEREFRRLQEADIDIQSYDFDTVFVDP 295 Query: 300 PRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359 PR+G+D+ T+ ++Q + I+YISCNPD+L +L L+ TH + + ALFDQFPYT H+E G Sbjct: 296 PRAGIDNETLKLLQGFERIIYISCNPDTLYENLKTLTQTHRVTKFALFDQFPYTHHVESG 355 Query: 360 VLLVR 364 VLL + Sbjct: 356 VLLEK 360 >gi|262278877|ref|ZP_06056662.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter calcoaceticus RUH2202] gi|262259228|gb|EEY77961.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter calcoaceticus RUH2202] Length = 361 Score = 391 bits (1005), Expect = e-107, Method: Composition-based stats. Identities = 171/365 (46%), Positives = 241/365 (66%), Gaps = 11/365 (3%) Query: 6 LIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF-- 63 + Y QQL K+DR+ F P L++F S H+RMRAEF IWH +D+++ MF Sbjct: 1 MTSSYHQQLQTKIDRITAQFSEFTPPTLEVFESPEQHFRMRAEFRIWHTENDMFYAMFER 60 Query: 64 --DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTL 121 D + K +RID F IN LM +++ ++ EP L ++LF+ D+L + S + +VTL Sbjct: 61 NDDDKQKTVLRIDEFPIADQSINDLMPKLLEELKAEPKLSSRLFEADFLATLSGEMLVTL 120 Query: 122 IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYR 181 IYHR LD W + A L + L I+++GR+ KI + D+V E + R+ Y+ Sbjct: 121 IYHRKLDQEWEQAAKALAEKL-----DIKIMGRSRGQKIIIGDDFVVEEFELLNRSFKYK 175 Query: 182 QIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241 QIE+SFTQPNA + ML+W A +G + LLELYCGNGNF+L L+ F+RVLA E+AK Sbjct: 176 QIESSFTQPNAQVCKKMLQWACDAAEGSKKHLLELYCGNGNFTLPLSLKFERVLATELAK 235 Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDP 299 SV AA++NI N ++N+++ R+S++EFTQA + EREF RL++ IDI SY F T+FVDP Sbjct: 236 SSVYAAQWNIEQNQIDNIQVARLSAEEFTQAYQGEREFRRLQEANIDIQSYDFDTVFVDP 295 Query: 300 PRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359 PR+G+DD T+ ++Q + I+YISCNPD+L +L IL TH I + ALFDQFPYT H+E G Sbjct: 296 PRAGIDDETLKLLQGFERIIYISCNPDTLYENLKILGLTHRITKFALFDQFPYTHHVESG 355 Query: 360 VLLVR 364 VLL + Sbjct: 356 VLLEK 360 >gi|226954161|ref|ZP_03824625.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter sp. ATCC 27244] gi|226835110|gb|EEH67493.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter sp. ATCC 27244] Length = 361 Score = 391 bits (1005), Expect = e-107, Method: Composition-based stats. Identities = 176/365 (48%), Positives = 243/365 (66%), Gaps = 11/365 (3%) Query: 6 LIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF-- 63 + Y+QQL EKV+R+ F P L++F+S H+RMRAEF +WH DDL++ MF Sbjct: 1 MTVSYQQQLQEKVERITAQFAPFNPPALEVFQSPEQHFRMRAEFRLWHTDDDLFYAMFER 60 Query: 64 --DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTL 121 D + K +RID F IN LM ++ ++ P+L ++F+ D+L + S + +VTL Sbjct: 61 AEDGKQKTVIRIDEFPIADQSINDLMPRLLEELKAVPILSQRIFEADFLATLSGEMLVTL 120 Query: 122 IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYR 181 IYHR LD W A L + L+ I+++GR+ K+ + DYV E+L V GR Y+ Sbjct: 121 IYHRRLDSEWEAAAKTLAEKLN-----IKIMGRSRGQKVIVGDDYVVEQLNVHGRIFKYK 175 Query: 182 QIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241 QIE+SFTQPN + HMLEW A + Q DLLELYCGNGNF+L L+ F+RVLA E+AK Sbjct: 176 QIESSFTQPNTQVCKHMLEWACDAAQNSQKDLLELYCGNGNFTLPLSLKFNRVLATELAK 235 Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDP 299 SV AA++NI N + N+++ R+S++EFTQA EREF RL++ IDI SY F TIFVDP Sbjct: 236 SSVYAAQWNIEQNQIENIQVARLSAEEFTQAYEGEREFRRLQEANIDIQSYHFDTIFVDP 295 Query: 300 PRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359 PR+G+DDAT+ ++Q + I+YISCNPD+L +L L+ TH I + ALFDQFP+T H+E G Sbjct: 296 PRAGIDDATLALMQGFERIIYISCNPDTLHDNLKTLTQTHRISKFALFDQFPFTHHIESG 355 Query: 360 VLLVR 364 VLL + Sbjct: 356 VLLEK 360 >gi|192359782|ref|YP_001982649.1| tRNA (uracil-5-)-methyltransferase [Cellvibrio japonicus Ueda107] gi|190685947|gb|ACE83625.1| tRNA (uracil-5-)-methyltransferase [Cellvibrio japonicus Ueda107] Length = 374 Score = 391 bits (1005), Expect = e-107, Method: Composition-based stats. Identities = 186/356 (52%), Positives = 241/356 (67%), Gaps = 5/356 (1%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69 YE QL +K+ RL Q +F +P + +FRS H+RMR EF IWH+ ++MF Q K Sbjct: 24 YEAQLQQKLIRLNQDFASFNLPEISVFRSPEKHFRMRTEFRIWHERGTAMYVMFSQTDKR 83 Query: 70 RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDD 129 I F GS IN LM E+MA + LR KLFQ+++LTS S+QA++TL+YH+ LD+ Sbjct: 84 PYPIREFPIGSERINQLMPELMALVNRHECLRHKLFQVEFLTSLSNQALITLVYHKPLDE 143 Query: 130 AWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQ 189 W A LR L+ +++IGR+ K KI L+RD++ E L V GR Y+Q+E SFTQ Sbjct: 144 EWISAATDLRKQLN-----VEIIGRSRKQKILLERDHIIECLKVNGREYRYQQVEGSFTQ 198 Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249 PNA + ML W T+ GDLLELYCGNGNF+L LA++FDRVLA EI+K SV++A Y Sbjct: 199 PNARVCEQMLSWAQEQTRHTGGDLLELYCGNGNFTLPLAQNFDRVLATEISKTSVDSALY 258 Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309 N N V N++I RMSS+EFTQAM REFNRLK I ++ YRF TIFVDPPR+GLD AT Sbjct: 259 NSRLNQVENLQIARMSSEEFTQAMDGVREFNRLKHISLNDYRFSTIFVDPPRAGLDPATC 318 Query: 310 GMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 + Q + +I+YISCNP++L +L L+ TH I A FDQFPYT H+ECGVLL R+ Sbjct: 319 HLAQRFDNIVYISCNPETLKDNLQTLTQTHQICTFAAFDQFPYTHHLECGVLLQRR 374 >gi|260555229|ref|ZP_05827450.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter baumannii ATCC 19606] gi|260411771|gb|EEX05068.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter baumannii ATCC 19606] Length = 361 Score = 391 bits (1005), Expect = e-107, Method: Composition-based stats. Identities = 169/365 (46%), Positives = 242/365 (66%), Gaps = 11/365 (3%) Query: 6 LIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF-- 63 + Y QQL K+DR+ F P L++F S H+RMRAEF IWH +D+++ MF Sbjct: 1 MTSSYRQQLQAKIDRITTQFSEFTPPTLEVFESPEQHFRMRAEFRIWHTENDMFYAMFER 60 Query: 64 --DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTL 121 D + K +RID F IN LM ++A ++ LL +LF++D+L + S + +VTL Sbjct: 61 NDDGKQKTVVRIDEFPIADKSINDLMPLLLAELKANSLLSQRLFEVDFLATLSGEMLVTL 120 Query: 122 IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYR 181 IYHR L+ W + A L + L+ I+++GR+ KI + D+V E + R+ Y+ Sbjct: 121 IYHRKLNQEWEQEAKALAEKLN-----IKIMGRSRGQKIVIGDDFVVEEFELLNRSFKYK 175 Query: 182 QIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241 QIE+SFTQPNA + ML+W A +G + LLELYCGNGNF+L L+ F+RVLA E+AK Sbjct: 176 QIESSFTQPNAQVCKKMLQWACDAAEGSKKHLLELYCGNGNFTLPLSLKFERVLATELAK 235 Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK--DIDIHSYRFKTIFVDP 299 SV AA++NI N ++N+++ R+S++EFTQA + EREF RL+ DIDI SY F T+FVDP Sbjct: 236 SSVYAAQWNIEQNQIDNIQVARLSAEEFTQAYQGEREFRRLQEADIDIQSYDFDTVFVDP 295 Query: 300 PRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359 PR+G+DD T+ ++Q++ I+YISCNPD+L +L L+ TH + + ALFDQFPYT H+E G Sbjct: 296 PRAGIDDETLKLLQSFERIIYISCNPDTLYENLKTLTQTHRVTKFALFDQFPYTHHVESG 355 Query: 360 VLLVR 364 VLL + Sbjct: 356 VLLEK 360 >gi|170719970|ref|YP_001747658.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas putida W619] gi|226705984|sp|B1J3Q4|TRMA_PSEPW RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|169757973|gb|ACA71289.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas putida W619] Length = 361 Score = 391 bits (1004), Expect = e-106, Method: Composition-based stats. Identities = 171/366 (46%), Positives = 229/366 (62%), Gaps = 6/366 (1%) Query: 1 MSGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60 MS Y+ QL KV RLR+++ F P +F S HYR+RAEF +W + ++ Sbjct: 1 MSAAFDPSAYDAQLQAKVTRLRELLAPFGAPQPAVFDSPREHYRLRAEFRLWREDGQRHY 60 Query: 61 IMFDQQ-TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119 MF + + ID F S INALM + A + L +LFQ+++LT+ + A+V Sbjct: 61 AMFAPGEKHKAILIDDFPIASERINALMPRLKAAWQASDELSNRLFQVEFLTTLAGDAMV 120 Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179 T+ YHR LDDAW A +L + L + LIGR+ ++ + RDY E+L VAGR Sbjct: 121 TMCYHRPLDDAWEVAARQLAEEL-----GVSLIGRSKGKRLVIGRDYAVEKLDVAGRVFS 175 Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEI 239 YRQ E +FTQPN +N ML W A DLLELYCGNGNF+L LA +VLA EI Sbjct: 176 YRQPEGAFTQPNGAVNQKMLSWAYDAIGERDDDLLELYCGNGNFTLPLATRVRQVLATEI 235 Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299 +K SV AA N++ N V+NV++VR+S++E TQA+ R F RL+ ID+ SY F T+FVDP Sbjct: 236 SKTSVNAALSNLSENAVDNVRLVRLSAEELTQALNEVRPFRRLEGIDLKSYAFGTVFVDP 295 Query: 300 PRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359 PR+G+D T + + + ILYISCNP++L +++S L TH IER ALFDQFPYT HME G Sbjct: 296 PRAGMDPDTCELTRRFERILYISCNPETLAQNISQLQDTHRIERCALFDQFPYTHHMESG 355 Query: 360 VLLVRK 365 VLLVR+ Sbjct: 356 VLLVRR 361 >gi|262831412|sp|B3PJ74|TRMA_CELJU RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT Length = 366 Score = 391 bits (1004), Expect = e-106, Method: Composition-based stats. Identities = 186/356 (52%), Positives = 241/356 (67%), Gaps = 5/356 (1%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69 YE QL +K+ RL Q +F +P + +FRS H+RMR EF IWH+ ++MF Q K Sbjct: 16 YEAQLQQKLIRLNQDFASFNLPEISVFRSPEKHFRMRTEFRIWHERGTAMYVMFSQTDKR 75 Query: 70 RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDD 129 I F GS IN LM E+MA + LR KLFQ+++LTS S+QA++TL+YH+ LD+ Sbjct: 76 PYPIREFPIGSERINQLMPELMALVNRHECLRHKLFQVEFLTSLSNQALITLVYHKPLDE 135 Query: 130 AWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQ 189 W A LR L+ +++IGR+ K KI L+RD++ E L V GR Y+Q+E SFTQ Sbjct: 136 EWISAATDLRKQLN-----VEIIGRSRKQKILLERDHIIECLKVNGREYRYQQVEGSFTQ 190 Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249 PNA + ML W T+ GDLLELYCGNGNF+L LA++FDRVLA EI+K SV++A Y Sbjct: 191 PNARVCEQMLSWAQEQTRHTGGDLLELYCGNGNFTLPLAQNFDRVLATEISKTSVDSALY 250 Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309 N N V N++I RMSS+EFTQAM REFNRLK I ++ YRF TIFVDPPR+GLD AT Sbjct: 251 NSRLNQVENLQIARMSSEEFTQAMDGVREFNRLKHISLNDYRFSTIFVDPPRAGLDPATC 310 Query: 310 GMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 + Q + +I+YISCNP++L +L L+ TH I A FDQFPYT H+ECGVLL R+ Sbjct: 311 HLAQRFDNIVYISCNPETLKDNLQTLTQTHQICTFAAFDQFPYTHHLECGVLLQRR 366 >gi|28871786|ref|NP_794405.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas syringae pv. tomato str. DC3000] gi|50401547|sp|Q87WA0|TRMA_PSESM RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|28855038|gb|AAO58100.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas syringae pv. tomato str. DC3000] Length = 361 Score = 391 bits (1004), Expect = e-106, Method: Composition-based stats. Identities = 171/366 (46%), Positives = 227/366 (62%), Gaps = 6/366 (1%) Query: 1 MSGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60 MS Y++QL EK RLR+++ F P Q+F S HYR+RAEF +W + Y+ Sbjct: 1 MSVPFDPASYDRQLEEKTARLRELLAPFDAPEPQVFDSPREHYRLRAEFRLWREDQKRYY 60 Query: 61 IMFDQQT-KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119 MF K + ++ S INALM + P L KLFQ+D+LT+ + A++ Sbjct: 61 AMFAPGDNKTPILLEGLPIASQRINALMPVLRERWEASPTLNHKLFQVDFLTTLAGDAMI 120 Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179 T+ YHR LDD W A +L A + + LIGR+ K+ + DYV E+L VAGRT Sbjct: 121 TMCYHRPLDDEWLAAAEQL-----AVELDVSLIGRSKGQKLIIGHDYVTEKLDVAGRTFS 175 Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEI 239 YRQ E +FTQPN +N ML W A Q DLLELYCGNGNF+L LA +VLA EI Sbjct: 176 YRQPEGAFTQPNGTVNGKMLNWAFDALGERQDDLLELYCGNGNFTLPLATRVRKVLATEI 235 Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299 +K SV AA N+ N V+NV +VR+S++E T+A+ R F RL+ ID+ SY F ++FVDP Sbjct: 236 SKTSVNAALSNLDDNGVDNVTLVRLSAEELTEALNEVRPFRRLQGIDLKSYDFGSVFVDP 295 Query: 300 PRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359 PR+G+D T + + + ILYISCNP++L +++ L TH IER ALFDQFPYT HME G Sbjct: 296 PRAGMDPDTCELTRRFERILYISCNPETLAANIAQLYDTHRIERCALFDQFPYTHHMESG 355 Query: 360 VLLVRK 365 VLLVR+ Sbjct: 356 VLLVRR 361 >gi|319637755|ref|ZP_07992521.1| tRNA (uracil-5-)-methyltransferase [Neisseria mucosa C102] gi|317400910|gb|EFV81565.1| tRNA (uracil-5-)-methyltransferase [Neisseria mucosa C102] Length = 361 Score = 391 bits (1004), Expect = e-106, Method: Composition-based stats. Identities = 169/363 (46%), Positives = 244/363 (67%), Gaps = 11/363 (3%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTK- 68 Y+QQLA+K L+Q+ P +++F S HYRMRAEF IWH+G ++++ MF++ K Sbjct: 4 YQQQLADKKQYLQQLFQGLDFPEIEVFESPEQHYRMRAEFRIWHEGGEMFYAMFERGQKA 63 Query: 69 ---ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHR 125 +R D F S INALM +++ P L+ + + +++L++ S + +VT+IYH+ Sbjct: 64 SGASLIRCDQFPAASESINALMPKLIEAASNHPELKNRWYAVEFLSTLSGEMLVTMIYHK 123 Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIEN 185 L++AW++ L A I +IGR+ KI L +D+V E L V G+T YRQIE Sbjct: 124 KLNEAWQQATQEL-----AHNLGIHIIGRSRGQKIVLSQDFVTEALEVNGKTFCYRQIEG 178 Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 SFTQPNA + ML W A + + DLLELYCGNGNF+L L++HF++VLA E++K SV Sbjct: 179 SFTQPNAQVCQKMLTWACNAAQNLGKDLLELYCGNGNFTLPLSQHFNQVLATEVSKTSVN 238 Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSG 303 AA++NI AN + N+KI R+S++EFT+A + REF RL++ ID+ +Y F TIFVDPPR+G Sbjct: 239 AAQWNIEANQITNLKIARLSAEEFTEAYTQNREFRRLQEQGIDLKNYDFSTIFVDPPRAG 298 Query: 304 LDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363 +DD T+ +V + ++LYISCNP++L +L L THTIER ALFDQFP+T H+E GV L Sbjct: 299 VDDETLKLVARFDNVLYISCNPETLRANLDTLCQTHTIERAALFDQFPFTHHIESGVWLK 358 Query: 364 RKP 366 +K Sbjct: 359 KKK 361 >gi|241760255|ref|ZP_04758350.1| tRNA-methyltransferase [Neisseria flavescens SK114] gi|241319133|gb|EER55611.1| tRNA-methyltransferase [Neisseria flavescens SK114] Length = 360 Score = 391 bits (1004), Expect = e-106, Method: Composition-based stats. Identities = 170/362 (46%), Positives = 244/362 (67%), Gaps = 11/362 (3%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTK- 68 Y+QQLA+K L+Q+ P +++F S HYRMRAEF IWH+G ++++ MF++ K Sbjct: 4 YQQQLADKKQYLQQLFQGLDFPEIEVFESPEQHYRMRAEFRIWHEGGEMFYAMFERGQKA 63 Query: 69 ---ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHR 125 +R D F S INALM +++ P L+ + + +++L++ S + +VT+IYH+ Sbjct: 64 SGASLIRCDQFPAASESINALMPKLIEAASNHPELKNRWYAVEFLSTLSGEMLVTMIYHK 123 Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIEN 185 L++AW++ A L A I +IGR+ KI L +D+V E L V G+T YRQIE Sbjct: 124 KLNEAWQQAAQEL-----AHNLGIHIIGRSRGQKIVLSQDFVTEALEVNGKTFRYRQIEG 178 Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 SFTQPNA + ML W A + + DLLELYCGNGNF+L L++HF +VLA E++K SV Sbjct: 179 SFTQPNAQVCQKMLTWACDAAQNLGKDLLELYCGNGNFTLPLSQHFTQVLATEVSKTSVN 238 Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSG 303 AA++NI AN + N+KI R+S++EFT+A + REF RL++ ID+ +Y F TIFVDPPR+G Sbjct: 239 AAQWNIEANQITNLKIARLSAEEFTEAYTQNREFRRLQEQGIDLKNYDFSTIFVDPPRAG 298 Query: 304 LDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363 +DD T+ +V + ++LYISCNP++L +L L THTIER ALFDQFP+T H+E GV L Sbjct: 299 VDDETLKLVARFDNVLYISCNPETLRTNLDTLCQTHTIERAALFDQFPFTHHIESGVWLK 358 Query: 364 RK 365 +K Sbjct: 359 KK 360 >gi|169796179|ref|YP_001713972.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter baumannii AYE] gi|262827608|sp|B0VCX5|TRMA_ACIBY RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|169149106|emb|CAM86983.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter baumannii AYE] Length = 361 Score = 390 bits (1003), Expect = e-106, Method: Composition-based stats. Identities = 169/365 (46%), Positives = 241/365 (66%), Gaps = 11/365 (3%) Query: 6 LIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF-- 63 + Y QQL K+DR+ F P L++F S H+RMRAEF IWH +D+++ MF Sbjct: 1 MTSSYRQQLQAKIDRITTQFSEFTPPTLEVFESPEQHFRMRAEFRIWHTENDMFYAMFER 60 Query: 64 --DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTL 121 D + K +RID F IN LM ++A ++ LL +LF++D+L + S + +VTL Sbjct: 61 NGDGKQKTVVRIDEFPIADKSINDLMPLLLAELKANSLLSQRLFEVDFLATLSGEMLVTL 120 Query: 122 IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYR 181 IYHR L+ W + A L + L+ I+++GR+ KI + D+V E + R+ Y+ Sbjct: 121 IYHRKLNQEWEQAAKALAEKLN-----IKIMGRSRGQKIVIGDDFVVEEFELLNRSFKYK 175 Query: 182 QIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241 QIE+SFTQPNA + ML+W A +G + LLELYCGNGNF+L L+ F+RVLA E+AK Sbjct: 176 QIESSFTQPNAQVCKKMLQWACDAAEGSKKHLLELYCGNGNFTLPLSLKFERVLATELAK 235 Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK--DIDIHSYRFKTIFVDP 299 SV AA++NI N ++N+++ R+S++EFTQA + EREF RL+ DIDI SY F T+FVDP Sbjct: 236 SSVYAAQWNIEQNQIDNIQVARLSAEEFTQAYQGEREFRRLQEADIDIQSYDFGTVFVDP 295 Query: 300 PRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359 PR+G+DD T+ ++Q + I+YISCNPD+L +L L+ TH + + ALFDQFPYT H+E G Sbjct: 296 PRAGIDDETLKLLQGFERIIYISCNPDTLYENLKTLTQTHRVTKFALFDQFPYTHHVESG 355 Query: 360 VLLVR 364 VLL + Sbjct: 356 VLLEK 360 >gi|329120742|ref|ZP_08249404.1| tRNA (uracil-5-)-methyltransferase [Neisseria bacilliformis ATCC BAA-1200] gi|327460539|gb|EGF06875.1| tRNA (uracil-5-)-methyltransferase [Neisseria bacilliformis ATCC BAA-1200] Length = 364 Score = 390 bits (1003), Expect = e-106, Method: Composition-based stats. Identities = 176/367 (47%), Positives = 240/367 (65%), Gaps = 11/367 (2%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 + Y +QLA+K D LR++ +P +F S HYRMRAEF IWH+G + MF+ Sbjct: 1 MTDSGYARQLADKTDFLRRLFAGVAMPEWAVFPSPERHYRMRAEFRIWHEGGGTSYAMFE 60 Query: 65 QQTK----ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVT 120 K +R+ F S INALM E++A + +P+L+ +LFQ ++L++ S +V+ Sbjct: 61 NGKKAGGASVVRLAQFPAASAAINALMPELLAALSTKPVLKNRLFQCEFLSTLSGDMLVS 120 Query: 121 LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIY 180 LIYHR LDDAW+ A L+ L I LIGR+ KI L RD+V E L GR Y Sbjct: 121 LIYHRKLDDAWQAAAQDLQRRL-----GIALIGRSKGQKIVLSRDFVTEELEAGGRIFRY 175 Query: 181 RQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240 RQ E +F+QPNA + MLEW G+ GDLLELYCGNGNF+L LARHF RVLA E++ Sbjct: 176 RQPEGAFSQPNAAVCAKMLEWACGCAAGLGGDLLELYCGNGNFTLPLARHFGRVLATEVS 235 Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVD 298 K SV AA++NI A+ +N++I R+S++EF QA REF RL++ I + Y F TIFVD Sbjct: 236 KTSVRAAQWNIEADGADNIRIARLSAEEFAQAYGGGREFRRLREQGISLSDYAFSTIFVD 295 Query: 299 PPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMEC 358 PPR+G+D+AT+ ++Q + +I+YISCNP++L +L +L TH I+ ALFDQFP+T H+E Sbjct: 296 PPRAGVDEATLRLMQGFDNIIYISCNPETLRANLDVLLQTHEIKAAALFDQFPFTAHIES 355 Query: 359 GVLLVRK 365 GVLL RK Sbjct: 356 GVLLRRK 362 >gi|169633681|ref|YP_001707417.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter baumannii SDF] gi|213157087|ref|YP_002319132.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter baumannii AB0057] gi|215483633|ref|YP_002325854.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter baumannii AB307-0294] gi|301348206|ref|ZP_07228947.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter baumannii AB056] gi|301510993|ref|ZP_07236230.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter baumannii AB058] gi|301597930|ref|ZP_07242938.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter baumannii AB059] gi|332850564|ref|ZP_08432840.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter baumannii 6013150] gi|332865774|ref|ZP_08436569.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter baumannii 6013113] gi|262827573|sp|B7H3Q6|TRMA_ACIB3 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|262827592|sp|B7I4Y4|TRMA_ACIB5 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|262827605|sp|B0VR22|TRMA_ACIBS RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|169152473|emb|CAP01441.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter baumannii] gi|213056247|gb|ACJ41149.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter baumannii AB0057] gi|213988998|gb|ACJ59297.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter baumannii AB307-0294] gi|332730626|gb|EGJ61940.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter baumannii 6013150] gi|332735115|gb|EGJ66199.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter baumannii 6013113] Length = 361 Score = 390 bits (1002), Expect = e-106, Method: Composition-based stats. Identities = 169/365 (46%), Positives = 241/365 (66%), Gaps = 11/365 (3%) Query: 6 LIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF-- 63 + Y QQL K+DR+ F P L++F S H+RMRAEF IWH +D+++ MF Sbjct: 1 MTSSYRQQLQAKIDRITTQFSEFTPPTLEVFESPEQHFRMRAEFRIWHTENDMFYAMFER 60 Query: 64 --DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTL 121 D + K +RID F IN LM ++A ++ LL +LF++D+L + S + +VTL Sbjct: 61 NDDGKQKTVVRIDEFPIADKSINDLMPLLLAELKANSLLSQRLFEVDFLATLSGEMLVTL 120 Query: 122 IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYR 181 IYHR L+ W + A L + L+ I+++GR+ KI + D+V E + R+ Y+ Sbjct: 121 IYHRKLNQEWEQAAKALAEKLN-----IKIMGRSRGQKIVIGDDFVVEEFELLNRSFKYK 175 Query: 182 QIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241 QIE+SFTQPNA + ML+W A +G + LLELYCGNGNF+L L+ F+RVLA E+AK Sbjct: 176 QIESSFTQPNAQVCKKMLQWACDAAEGSKKHLLELYCGNGNFTLPLSLKFERVLATELAK 235 Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK--DIDIHSYRFKTIFVDP 299 SV AA++NI N ++N+++ R+S++EFTQA + EREF RL+ DIDI SY F T+FVDP Sbjct: 236 SSVYAAQWNIEQNQIDNIQVARLSAEEFTQAYQGEREFRRLQEADIDIQSYDFGTVFVDP 295 Query: 300 PRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359 PR+G+DD T+ ++Q + I+YISCNPD+L +L L+ TH + + ALFDQFPYT H+E G Sbjct: 296 PRAGIDDETLKLLQGFERIIYISCNPDTLYENLKTLTQTHRVTKFALFDQFPYTHHVESG 355 Query: 360 VLLVR 364 VLL + Sbjct: 356 VLLEK 360 >gi|148549718|ref|YP_001269820.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas putida F1] gi|166988120|sp|A5W926|TRMA_PSEP1 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|148513776|gb|ABQ80636.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas putida F1] Length = 361 Score = 390 bits (1002), Expect = e-106, Method: Composition-based stats. Identities = 168/366 (45%), Positives = 229/366 (62%), Gaps = 6/366 (1%) Query: 1 MSGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60 MS Y QL KV RLR+++ F P +F S HYR+RAEF +W + ++ Sbjct: 1 MSAAFDPSSYATQLDAKVARLRELLAPFGAPEPAVFDSPREHYRLRAEFRLWREDGQRHY 60 Query: 61 IMFDQQ-TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119 MF + + ID F S INALM + A + L +LFQ+++LT+ + A++ Sbjct: 61 AMFAPGEKHKAILIDDFPIASERINALMPRLKAAWQASEELGNRLFQVEFLTTLAGDAMI 120 Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179 T+ YHR LD+AW A +L +AL + +IGR+ ++ + RDY E+L VAGR Sbjct: 121 TMCYHRPLDEAWEVEARQLAEAL-----GVSVIGRSKGKRLVIGRDYAVEKLDVAGRVFS 175 Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEI 239 YRQ E +FTQPN +N ML W A + DLLELYCGNGNF+L LA +VLA EI Sbjct: 176 YRQPEGAFTQPNGAVNQKMLSWAFEAMGDREDDLLELYCGNGNFTLPLATRVRQVLATEI 235 Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299 +K SV AA N+ N V+NV++VR+S++E TQA+ R F RL+ ID+ SY+F T+FVDP Sbjct: 236 SKTSVNAALSNLDENAVDNVRLVRLSAEELTQALNEVRPFRRLEGIDLKSYQFGTVFVDP 295 Query: 300 PRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359 PR+G+D T + + + ILYISCNP++L +++ L TH IER ALFDQFPYT HME G Sbjct: 296 PRAGMDPDTCELTRRFERILYISCNPETLAANIAQLQDTHRIERCALFDQFPYTHHMESG 355 Query: 360 VLLVRK 365 VLLVR+ Sbjct: 356 VLLVRR 361 >gi|293608290|ref|ZP_06690593.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292828863|gb|EFF87225.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 361 Score = 390 bits (1002), Expect = e-106, Method: Composition-based stats. Identities = 171/365 (46%), Positives = 241/365 (66%), Gaps = 11/365 (3%) Query: 6 LIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF-- 63 + Y QQL K++R+ F P L++F S H+RMRAEF IWH +D+++ MF Sbjct: 1 MTSSYRQQLQAKIERITTQFSEFTPPTLEVFESPEQHFRMRAEFRIWHTENDMFYAMFER 60 Query: 64 --DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTL 121 D + K +RID F IN LM +++ ++ EP L +LF+ D+L + S + +VTL Sbjct: 61 NDDDKQKTVVRIDEFPIADQSINDLMPKLLEELKAEPKLSNRLFEADFLATLSGEMLVTL 120 Query: 122 IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYR 181 IYHR LD W + A L A K I+++GR+ KI + D+V E + R+ Y+ Sbjct: 121 IYHRKLDQEWEQAAKAL-----AYKLDIKIMGRSRGQKIVIGDDFVVEEFELLNRSFKYK 175 Query: 182 QIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241 QIE+SFTQPNA + ML+W A +G + LLELYCGNGNF+L L+ F+RVLA E+AK Sbjct: 176 QIESSFTQPNAQVCKKMLQWACDAAEGSKKHLLELYCGNGNFTLPLSLKFERVLATELAK 235 Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDP 299 SV AA++NI N ++N+++ R+S++EFTQA + EREF RL++ IDI SY F T+FVDP Sbjct: 236 SSVYAAQWNIEQNQIDNIQVARLSAEEFTQAYQGEREFRRLQEANIDIQSYDFDTVFVDP 295 Query: 300 PRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359 PR+G+DD T+ ++Q + HI+YISCNPD+L +L LS TH + + ALFDQFPYT H+E G Sbjct: 296 PRAGIDDETLKLLQGFEHIIYISCNPDTLYENLKTLSQTHRLTKFALFDQFPYTHHVESG 355 Query: 360 VLLVR 364 VLL + Sbjct: 356 VLLEK 360 >gi|184157892|ref|YP_001846231.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter baumannii ACICU] gi|332872728|ref|ZP_08440694.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter baumannii 6014059] gi|262827600|sp|B2HYZ7|TRMA_ACIBC RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|183209486|gb|ACC56884.1| SAM-dependent methyltransferase related to tRNA (uracil-5-)-methyltransferase [Acinetobacter baumannii ACICU] gi|322508211|gb|ADX03665.1| trmA [Acinetobacter baumannii 1656-2] gi|323517837|gb|ADX92218.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter baumannii TCDC-AB0715] gi|332739025|gb|EGJ69886.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter baumannii 6014059] Length = 361 Score = 390 bits (1001), Expect = e-106, Method: Composition-based stats. Identities = 168/365 (46%), Positives = 242/365 (66%), Gaps = 11/365 (3%) Query: 6 LIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF-- 63 + Y QQL K+DR+ F P L++F S H+RMRAEF IWH +D+++ MF Sbjct: 1 MTSSYHQQLQAKIDRITTQFSEFTPPTLEVFESPEQHFRMRAEFRIWHTENDMFYAMFER 60 Query: 64 --DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTL 121 D + K +RID F IN LM ++A ++ LL +LF++D+L + S + +VTL Sbjct: 61 NDDGKQKTVVRIDEFPIADKSINDLMPLLLAELKANSLLSQRLFEVDFLATLSGEMLVTL 120 Query: 122 IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYR 181 IYHR L+ W + A L + L+ I+++GR+ KI + D+V E + R+ Y+ Sbjct: 121 IYHRKLNQEWEQEAKALAEKLN-----IKIMGRSRGQKIVIGDDFVVEEFELLNRSFKYK 175 Query: 182 QIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241 QIE+SFTQPNA + ML+W A +G + LLELYCGNGNF+L L+ F+RVLA E+AK Sbjct: 176 QIESSFTQPNAQVCKKMLQWACDAAEGSKKHLLELYCGNGNFTLPLSLKFERVLATELAK 235 Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK--DIDIHSYRFKTIFVDP 299 SV AA++NI N ++N+++ R+S++EFTQA + EREF RL+ DIDI SY F T+FVDP Sbjct: 236 SSVYAAQWNIEQNQIDNIQVARLSAEEFTQAYQGEREFRRLQEADIDIQSYDFDTVFVDP 295 Query: 300 PRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359 PR+G+DD T+ ++Q++ I+YISCNP++L +L L+ TH + + ALFDQFPYT H+E G Sbjct: 296 PRAGIDDETLKLLQSFERIIYISCNPNTLYENLKTLTQTHRVTKFALFDQFPYTHHVESG 355 Query: 360 VLLVR 364 VLL + Sbjct: 356 VLLEK 360 >gi|294669701|ref|ZP_06734768.1| hypothetical protein NEIELOOT_01602 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291308614|gb|EFE49857.1| hypothetical protein NEIELOOT_01602 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 364 Score = 390 bits (1001), Expect = e-106, Method: Composition-based stats. Identities = 171/362 (47%), Positives = 240/362 (66%), Gaps = 11/362 (3%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTK- 68 Y QQL +K LR++ +P Q+F S HYRMRAEF IWH+GD + + MF++ K Sbjct: 6 YLQQLDDKTALLRRLFSGIPMPEWQVFPSPEQHYRMRAEFRIWHEGDGISYAMFERGQKA 65 Query: 69 ---ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHR 125 +R+ F S IN LM ++A + +PLL+ +L+Q ++L++ S + +V+LIYHR Sbjct: 66 GTASLIRLTDFPAASASINRLMPLLLAELSADPLLKNRLYQCEFLSTLSGEMLVSLIYHR 125 Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIEN 185 LDD W+ A+ L+ L I +IGR+ K+ L +D+V E LTV G T YRQ E Sbjct: 126 KLDDGWKHAALALQKKL-----GIFIIGRSKGQKLVLAQDFVTETLTVNGETFRYRQTEG 180 Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 FTQPNA + MLEW + GDLLELYCGNGNF+L L+R F RVLA E++K SV+ Sbjct: 181 GFTQPNAAVCEKMLEWTCDCAQTPNGDLLELYCGNGNFTLPLSRRFRRVLATEVSKTSVQ 240 Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSG 303 AA++NI+AN +N++I R+S++EFT+A REF RL+ ID+ Y F T+FVDPPR+G Sbjct: 241 AAQWNISANGADNIRIARLSAEEFTEAFNGSREFRRLQKQQIDLAEYGFSTVFVDPPRAG 300 Query: 304 LDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363 +DD T+ ++ + I+YISCNP++L +L L THT+ER ALFDQFP+T H+E G+LL Sbjct: 301 VDDDTLKLLARFDRIIYISCNPETLRANLDALLQTHTVERAALFDQFPFTGHIESGLLLH 360 Query: 364 RK 365 +K Sbjct: 361 KK 362 >gi|325272411|ref|ZP_08138803.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas sp. TJI-51] gi|324102452|gb|EGB99906.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas sp. TJI-51] Length = 361 Score = 390 bits (1001), Expect = e-106, Method: Composition-based stats. Identities = 169/366 (46%), Positives = 229/366 (62%), Gaps = 6/366 (1%) Query: 1 MSGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60 MS Y QL KV RLR+++ F P +F S HYR+RAEF +W + ++ Sbjct: 1 MSAAFDPSSYAIQLDAKVARLRELLAPFGAPEPAVFDSPREHYRLRAEFRLWREDGQRHY 60 Query: 61 IMFDQQ-TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119 MF + + ID F SL IN LM + A + L +LFQ+++LT+ + A++ Sbjct: 61 AMFAPGEKHKAILIDDFPIASLRINELMPRLKAAWQASEALGNRLFQVEFLTTLAGDAMI 120 Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179 TL YHR LD+AW A +L +AL + +IGR+ ++ + RDY E+L VAGR Sbjct: 121 TLCYHRPLDEAWEVAARQLSEAL-----SVSVIGRSKGKRLVIGRDYAVEKLDVAGRVFS 175 Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEI 239 YRQ E +FTQPN +N ML W A + DLLELYCGNGNF+L LA +VLA EI Sbjct: 176 YRQPEGAFTQPNGAVNQKMLSWAFEAMGEREDDLLELYCGNGNFTLPLATRVRQVLATEI 235 Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299 +K SV AA N+ N VNNV++VR+S++E TQA+ R F RL+ ID+ +Y F T+FVDP Sbjct: 236 SKTSVNAALSNLDENAVNNVRLVRLSAEELTQALNEVRPFRRLEGIDLKAYDFGTVFVDP 295 Query: 300 PRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359 PR+G+D T + + + ILYISCNP++L ++++ L TH IER ALFDQFPYT HME G Sbjct: 296 PRAGMDPDTCELTRRFERILYISCNPETLAQNIAQLQDTHRIERCALFDQFPYTHHMESG 355 Query: 360 VLLVRK 365 VLLVR+ Sbjct: 356 VLLVRR 361 >gi|326797231|ref|YP_004315051.1| tRNA (uracil-5-)-methyltransferase [Marinomonas mediterranea MMB-1] gi|326547995|gb|ADZ93215.1| tRNA (uracil-5-)-methyltransferase [Marinomonas mediterranea MMB-1] Length = 364 Score = 390 bits (1001), Expect = e-106, Method: Composition-based stats. Identities = 178/361 (49%), Positives = 246/361 (68%), Gaps = 6/361 (1%) Query: 7 IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66 + YEQQL EKVD L+ +M F +P L +++S HYRMRAEF +WHDGDD+Y+ MFD + Sbjct: 8 PELYEQQLDEKVDALKALMAEFSMPELNVYKSAETHYRMRAEFRVWHDGDDMYYAMFDSK 67 Query: 67 T-KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHR 125 + +R+D F S LIN LM ++ +R P+LR KLFQ+D+LT+Q+ +A+++L+YH+ Sbjct: 68 DPRTPIRVDQFPVASKLINELMPALLEAVRHVPILRHKLFQVDFLTTQTGEALISLLYHK 127 Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIEN 185 +DD W + A L + A IGR+ K K L RD+V E LTV G+ Y+Q+EN Sbjct: 128 PIDDEWEDAAKELNKSFPA----CHFIGRSRKKKKVLTRDFVMETLTVNGQKYHYQQVEN 183 Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 SFTQPNAGI+ MLEW + T+G GDLLE+YCGNGNFS+ LAR FD+V+ EIAK SV Sbjct: 184 SFTQPNAGISEKMLEWAMDVTQGCSGDLLEMYCGNGNFSIPLARRFDQVIGTEIAKVSVN 243 Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR-LKDIDIHSYRFKTIFVDPPRSGL 304 +A NIA N + NV++V+M+S++ + A+ E E + L + + + VDPPR+GL Sbjct: 244 SASLNIAMNGMKNVQVVKMASEDVSAALNGEGELPKALVQAGMANLSPSVVLVDPPRAGL 303 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 DDATV +V+ ILYISCNP++L ++ LS+TH + R ALFDQFPYT H+E GV L R Sbjct: 304 DDATVELVRKVDKILYISCNPETLKNNMQALSSTHDVTRFALFDQFPYTHHVEAGVFLER 363 Query: 365 K 365 + Sbjct: 364 R 364 >gi|213966776|ref|ZP_03394927.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas syringae pv. tomato T1] gi|301383285|ref|ZP_07231703.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas syringae pv. tomato Max13] gi|302062476|ref|ZP_07254017.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas syringae pv. tomato K40] gi|302133458|ref|ZP_07259448.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213928626|gb|EEB62170.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas syringae pv. tomato T1] gi|331018924|gb|EGH98980.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 361 Score = 390 bits (1001), Expect = e-106, Method: Composition-based stats. Identities = 170/366 (46%), Positives = 227/366 (62%), Gaps = 6/366 (1%) Query: 1 MSGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60 MS Y++QL EK RLR+++ F P Q+F S HYR+RAEF +W + Y+ Sbjct: 1 MSVPFDPASYDRQLEEKTVRLRELLAPFDAPEPQVFDSPREHYRLRAEFRLWREDQKRYY 60 Query: 61 IMFDQQT-KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119 MF K + ++ S INALM + P L KLFQ+D+LT+ + A++ Sbjct: 61 AMFAPGDNKTPILLEGLPIASERINALMPVLRERWEASPTLNHKLFQVDFLTTLAGDAMI 120 Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179 T+ YHR LDD W A +L A + + LIGR+ K+ + DYV E+L VAGRT Sbjct: 121 TMCYHRPLDDEWLAAAEQL-----AVELDVSLIGRSKGQKLIIGHDYVTEKLDVAGRTFS 175 Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEI 239 YRQ E +FTQPN +N ML W A Q DLLELYCGNGNF+L LA +VLA EI Sbjct: 176 YRQPEGAFTQPNGTVNGKMLNWAFDALGERQDDLLELYCGNGNFTLPLATRVRKVLATEI 235 Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299 +K SV AA N+ N V+NV +VR+S++E T+A+ R F RL+ +D+ SY F ++FVDP Sbjct: 236 SKTSVNAALSNLDDNGVDNVTLVRLSAEELTEALNEVRPFRRLQGVDLKSYDFGSVFVDP 295 Query: 300 PRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359 PR+G+D T + + + ILYISCNP++L +++ L TH IER ALFDQFPYT HME G Sbjct: 296 PRAGMDPDTCELTRRFERILYISCNPETLAANIAQLYDTHRIERCALFDQFPYTHHMESG 355 Query: 360 VLLVRK 365 VLLVR+ Sbjct: 356 VLLVRR 361 >gi|167035640|ref|YP_001670871.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas putida GB-1] gi|189036042|sp|B0KHR5|TRMA_PSEPG RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|166862128|gb|ABZ00536.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas putida GB-1] Length = 361 Score = 390 bits (1001), Expect = e-106, Method: Composition-based stats. Identities = 170/366 (46%), Positives = 229/366 (62%), Gaps = 6/366 (1%) Query: 1 MSGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60 MS Y QL KV RLR+++ F P +F S HYR+RAEF +W + ++ Sbjct: 1 MSAAFDPSSYATQLDAKVARLRELLAPFGAPEPAVFDSPREHYRLRAEFRLWREDGQRHY 60 Query: 61 IMFDQQTKER-MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119 MF Q K + + ID F S INALM + A + L +LFQ+++LT+ + A++ Sbjct: 61 AMFAQGDKHKAILIDDFPIASQRINALMPRLKAAWQASEELGNRLFQVEFLTTLAGDAMI 120 Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179 T+ YHR LD+AW A +L +AL + +IGR+ ++ + RDY E L VAGR Sbjct: 121 TMCYHRPLDEAWEVEARQLAEAL-----GVSVIGRSKGKRLVIGRDYAIEELDVAGRVFS 175 Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEI 239 YRQ E +FTQPN +N ML W A + DLLELYCGNGNF+L LA +VLA EI Sbjct: 176 YRQPEGAFTQPNGAVNQKMLSWAFEAIGEREDDLLELYCGNGNFTLPLATRVRQVLATEI 235 Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299 +K SV AA N+ N V+NV++VR+S++E TQA+ R F RL+ ID+ SY F T+FVDP Sbjct: 236 SKTSVNAALSNLDENAVDNVRLVRLSAEELTQALNEVRPFRRLEGIDLKSYEFGTVFVDP 295 Query: 300 PRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359 PR+G+D T + + + ILYISCNP++L +++ L TH IER ALFDQFPYT HME G Sbjct: 296 PRAGMDPDTCELTRRFERILYISCNPETLAANIAQLQDTHRIERCALFDQFPYTHHMESG 355 Query: 360 VLLVRK 365 VLLVR+ Sbjct: 356 VLLVRR 361 >gi|254805435|ref|YP_003083656.1| tRNA (uracil-5-)-methyltransferase [Neisseria meningitidis alpha14] gi|254668977|emb|CBA07299.1| tRNA (uracil-5-)-methyltransferase [Neisseria meningitidis alpha14] Length = 362 Score = 390 bits (1001), Expect = e-106, Method: Composition-based stats. Identities = 171/365 (46%), Positives = 240/365 (65%), Gaps = 11/365 (3%) Query: 7 IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66 + Y QQL +K D L+ + VP +++ S HYRMRAEF IWH+G ++++ MF++ Sbjct: 1 MSDYTQQLQDKKDHLKTLFAGLDVPEWEVYESPDKHYRMRAEFRIWHEGGEMFYAMFEKG 60 Query: 67 TK----ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122 K +R D F S +N LM E++A LR + + +++L++ S + +VT+I Sbjct: 61 QKAGGASLIRCDRFEAASEAVNRLMPELIAVAAQSAELRNRWYAVEFLSTLSGEMLVTMI 120 Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182 YH+ LD+ W + A ++ I +IGR+ KI L +DYV E L V R YRQ Sbjct: 121 YHKRLDNEWMQAAQA-----LQQQLDISVIGRSRGQKIVLKQDYVTETLKVGNRDFRYRQ 175 Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 IE SFTQPNA + MLEW A +G+ GDLLELYCGNGNF+L L+ F+RVLA EI+K Sbjct: 176 IEGSFTQPNAAVCQKMLEWACGAAEGLDGDLLELYCGNGNFTLPLSEKFERVLATEISKT 235 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPP 300 SV AA++NI AN + N+KI R+S++EFT+A R+REF RLKD I + Y F TIFVDPP Sbjct: 236 SVSAAQWNIEANRIGNIKIARLSAEEFTEAYTRKREFKRLKDGGIALTDYAFSTIFVDPP 295 Query: 301 RSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360 R+G+D+ T+ +V + +I+YISCNP++L +L L+ TH +ER ALFDQFP+T H+E GV Sbjct: 296 RAGIDEETLKLVSQFDNIIYISCNPETLRANLDTLAETHAVERAALFDQFPFTHHIESGV 355 Query: 361 LLVRK 365 LL +K Sbjct: 356 LLKKK 360 >gi|262831423|sp|A3M4W0|TRMA_ACIBT RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|193077167|gb|ABO11954.2| tRNA (uracil-5-)-methyltransferase [Acinetobacter baumannii ATCC 17978] Length = 361 Score = 389 bits (1000), Expect = e-106, Method: Composition-based stats. Identities = 168/365 (46%), Positives = 241/365 (66%), Gaps = 11/365 (3%) Query: 6 LIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF-- 63 + Y QQL K+DR+ F P L++F S H+RMRAEF IWH +D+++ MF Sbjct: 1 MTSSYRQQLQAKIDRITTQFSEFTPPTLEVFESPEQHFRMRAEFRIWHTENDMFYAMFER 60 Query: 64 --DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTL 121 D + K +RID F IN LM ++A ++ LL +LF++D+L + S + +VTL Sbjct: 61 NDDGKQKTVVRIDEFPIADKSINDLMPLLLAELKANSLLSQRLFEVDFLATLSGEMLVTL 120 Query: 122 IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYR 181 IYHR L+ W + A L + L+ I+++GR+ KI + D+V E + R+ Y+ Sbjct: 121 IYHRKLNQEWEQAAKALAEKLN-----IKIMGRSRGQKIVIGDDFVVEEFELLNRSFKYK 175 Query: 182 QIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241 QIE+SFTQPNA + ML+W A +G + LLELYCGNGNF+L L+ F+RVLA E+AK Sbjct: 176 QIESSFTQPNAQVCKKMLQWACDAAEGSKKHLLELYCGNGNFTLPLSLKFERVLATELAK 235 Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDP 299 SV AA++NI N ++N+++ R+S++EFTQA + EREF RL++ IDI SY F T+FVDP Sbjct: 236 SSVYAAQWNIEQNQIDNIQVARLSAEEFTQAYQGEREFRRLQEAYIDIQSYDFGTVFVDP 295 Query: 300 PRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359 PR+G+DD T+ ++Q + I+YISCNPD+L +L L+ TH + + ALFDQFPYT H+E G Sbjct: 296 PRAGIDDETLKLLQGFERIIYISCNPDTLYENLKTLTQTHRVTKFALFDQFPYTHHVESG 355 Query: 360 VLLVR 364 VLL + Sbjct: 356 VLLEK 360 >gi|254673083|emb|CBA07765.1| tRNA (uracil-5-)-methyltransferase [Neisseria meningitidis alpha275] gi|261392096|emb|CAX49593.1| tRNA (uracil-5-)-methyltransferase (tRNA(M-5-U54)-methyltransferase; RUMT) [Neisseria meningitidis 8013] gi|325204641|gb|ADZ00095.1| tRNA (uracil-5-)-methyltransferase [Neisseria meningitidis M01-240355] Length = 362 Score = 389 bits (1000), Expect = e-106, Method: Composition-based stats. Identities = 170/365 (46%), Positives = 239/365 (65%), Gaps = 11/365 (3%) Query: 7 IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66 + Y QQL +K D L+ + VP +++ S HYRMRAEF IWH+G ++++ MF++ Sbjct: 1 MSDYTQQLQDKKDHLKTLFAGLDVPEWEVYESPDKHYRMRAEFRIWHEGGEMFYAMFEKG 60 Query: 67 TK----ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122 K +R D F S +N LM E++A LR + + +++L++ S + +VT+I Sbjct: 61 QKAGGASLIRCDRFEAASEAVNRLMPELIAVAAQSAELRNRWYAVEFLSTLSGEMLVTMI 120 Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182 YH+ LD+ W + A ++ I +IGR+ KI L +DYV E L V R YRQ Sbjct: 121 YHKRLDNEWMQAAQA-----LQQQLDISVIGRSRGQKIVLKQDYVTETLKVGNRDFRYRQ 175 Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 IE SFTQPNA + MLEW A +G+ GDLLELYCGNGNF+L L+ F+RVLA EI+K Sbjct: 176 IEGSFTQPNAAVCQKMLEWACGAAEGLDGDLLELYCGNGNFTLPLSEKFERVLATEISKT 235 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPP 300 SV AA++NI AN + N+KI R+S++EFT+A +REF RLKD I + Y F TIFVDPP Sbjct: 236 SVSAAQWNIEANRIGNIKIARLSAEEFTEAYTGKREFKRLKDGGIALTDYAFSTIFVDPP 295 Query: 301 RSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360 R+G+D+ T+ +V + +I+YISCNP++L +L L+ TH +ER ALFDQFP+T H+E GV Sbjct: 296 RAGIDEETLKLVSQFDNIIYISCNPETLRANLDTLAETHAVERAALFDQFPFTHHIESGV 355 Query: 361 LLVRK 365 LL +K Sbjct: 356 LLKKK 360 >gi|309378436|emb|CBX22931.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 367 Score = 389 bits (1000), Expect = e-106, Method: Composition-based stats. Identities = 172/369 (46%), Positives = 236/369 (63%), Gaps = 11/369 (2%) Query: 7 IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66 + Y QQL K D L+ + VP +++ S HYRMRAEF IWH+G ++++ MF++ Sbjct: 1 MSDYTQQLQGKKDYLKTLFAGLDVPEWEVYESPDKHYRMRAEFRIWHEGGEMFYAMFEKG 60 Query: 67 TK----ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122 K +R D F S +N LM E++A LR + + +++L++ + +VT+I Sbjct: 61 QKAGGASLIRCDRFDAASEAVNRLMPELIALAAQSAELRNRWYAVEFLSTLGGEMLVTMI 120 Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182 YH+ LDD W A L+ L I +IGR+ KI L +DYV E L V R YRQ Sbjct: 121 YHKRLDDEWIRAAQALQQQL-----DISVIGRSRGQKIVLKQDYVTETLRVGDRDFHYRQ 175 Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 IE FTQPNA + MLEW A +G+ GDLLELYCGNGNF+L L+ F+RVLA EI+K Sbjct: 176 IEGGFTQPNAAVCQKMLEWACGAAEGLGGDLLELYCGNGNFTLPLSEKFERVLATEISKT 235 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPP 300 SV AA++NI AN + N+KI R+S++EFT+A +REF RLK+ I + Y F TIFVDPP Sbjct: 236 SVGAAQWNIEANRIGNIKIARLSAEEFTEAYTGKREFKRLKEGGIALTDYAFSTIFVDPP 295 Query: 301 RSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360 R+G+D T+ +V + +I+YISCNP++L +L L THT+ER ALFDQFP+T H+E GV Sbjct: 296 RAGIDGETLKLVSQFDNIIYISCNPETLRANLDTLVETHTVERAALFDQFPFTPHIESGV 355 Query: 361 LLVRKPSGW 369 LL +K G Sbjct: 356 LLKKKILGK 364 >gi|254671646|emb|CBA09369.1| tRNA (uracil-5-)-methyltransferase [Neisseria meningitidis alpha153] Length = 362 Score = 389 bits (999), Expect = e-106, Method: Composition-based stats. Identities = 170/365 (46%), Positives = 239/365 (65%), Gaps = 11/365 (3%) Query: 7 IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66 + Y QQL +K D L+ + VP +++ S HYRMRAEF IWH+G ++++ MF++ Sbjct: 1 MSDYTQQLQDKKDHLKTLFAGLDVPEWEVYESPDKHYRMRAEFRIWHEGGEMFYAMFEKG 60 Query: 67 TK----ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122 K +R D F S +N LM E++A LR + + +++L++ S + +VT+I Sbjct: 61 QKAGGASLIRCDRFEAASEAVNRLMPELIAVAAQSAELRNRWYAVEFLSTLSGEMLVTMI 120 Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182 YH+ LD+ W + A ++ I +IGR+ KI L +DYV E L V R YRQ Sbjct: 121 YHKRLDNEWMQAAQA-----LQQQLDISVIGRSRGQKIVLKQDYVTETLKVGNRDFRYRQ 175 Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 IE SFTQPNA + MLEW A +G+ GDLLELYCGNGNF+L L+ F+RVLA EI+K Sbjct: 176 IEGSFTQPNAAVCQKMLEWACGAAEGLDGDLLELYCGNGNFTLPLSEKFERVLATEISKT 235 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPP 300 SV AA++NI AN + N+KI R+S++EFT+A +REF RLKD I + Y F TIFVDPP Sbjct: 236 SVSAAQWNIEANRIGNIKIARLSAEEFTEAYTGKREFKRLKDGGIALTDYAFSTIFVDPP 295 Query: 301 RSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360 R+G+D+ T+ +V + +I+YISCNP++L +L L+ TH +ER ALFDQFP+T H+E GV Sbjct: 296 RAGIDEETLKLVSQFDNIIYISCNPETLRTNLDTLAETHAVERAALFDQFPFTHHIESGV 355 Query: 361 LLVRK 365 LL +K Sbjct: 356 LLKKK 360 >gi|325144927|gb|EGC67211.1| tRNA (uracil-5-)-methyltransferase [Neisseria meningitidis M01-240013] Length = 362 Score = 389 bits (999), Expect = e-106, Method: Composition-based stats. Identities = 168/365 (46%), Positives = 236/365 (64%), Gaps = 11/365 (3%) Query: 7 IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66 + Y QQL +K D L+ + VP +++ S HYRMRAEF IWH+G ++++ MF++ Sbjct: 1 MSDYTQQLQDKKDHLKTLFAGLDVPEWEVYESPDKHYRMRAEFRIWHEGGEMFYAMFEKG 60 Query: 67 TK----ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122 K +R D F S +N LM E++A LR + + +++L++ S + +VT+I Sbjct: 61 QKAGGASLIRCDRFDAASEAVNCLMPELIAVAAQSAELRNRWYAVEFLSTLSGEMLVTMI 120 Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182 YH+ LDD W + A ++ +IGR+ KI L +DYV E L V R YRQ Sbjct: 121 YHKRLDDEWMQAAQA-----LQQQLDTSVIGRSRGQKIVLKQDYVTETLKVGNRDFRYRQ 175 Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 IE FTQPNA + MLEW A +G+ GDLLELYCGNGNF+L L+ F+RVLA EI+K Sbjct: 176 IEGGFTQPNAAVCQKMLEWACGAAEGLDGDLLELYCGNGNFTLPLSEKFERVLATEISKT 235 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPP 300 S+ AA++NI AN + N+KI R+S++EFT+A +REF RLKD I + Y F TIFVDPP Sbjct: 236 SISAAQWNIEANGIGNIKIARLSAEEFTEAYTGKREFKRLKDGGIALTDYAFSTIFVDPP 295 Query: 301 RSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360 R+G+D+ T+ +V + +I+YISCNP++L +L L TH +ER ALFDQFP+T H+E GV Sbjct: 296 RAGIDEETLKLVSQFDNIIYISCNPETLRANLDTLVETHAVERAALFDQFPFTHHIESGV 355 Query: 361 LLVRK 365 LL +K Sbjct: 356 LLKKK 360 >gi|225075787|ref|ZP_03718986.1| hypothetical protein NEIFLAOT_00803 [Neisseria flavescens NRL30031/H210] gi|224952869|gb|EEG34078.1| hypothetical protein NEIFLAOT_00803 [Neisseria flavescens NRL30031/H210] Length = 360 Score = 389 bits (999), Expect = e-106, Method: Composition-based stats. Identities = 169/362 (46%), Positives = 245/362 (67%), Gaps = 11/362 (3%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTK- 68 Y+QQLA+K L+Q+ P +++F S HYRMRAEF IWH+G ++++ MF++ K Sbjct: 4 YQQQLADKKQYLQQLFQGLDCPEIEVFESPEQHYRMRAEFRIWHEGGEMFYAMFERGQKA 63 Query: 69 ---ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHR 125 +R D F S +NALM +++ P L+ + + +++L++ S + +VT+IYH+ Sbjct: 64 SGASLIRCDQFPAASESVNALMPKLIEAASNHPELKNRWYAVEFLSTLSGEMLVTMIYHK 123 Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIEN 185 L++AW++ A L A I +IGR+ KI L +D+V E L V G+T YRQIE Sbjct: 124 KLNEAWQQAAQEL-----AHNLGIHIIGRSRGQKIVLSQDFVTEALEVNGKTFRYRQIEG 178 Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 SFTQPNA + ML W A + + DLLELYCGNGNF+L L++HF++VLA E++K SV Sbjct: 179 SFTQPNAQVCQKMLTWACDAAQNLGKDLLELYCGNGNFTLPLSQHFNQVLATEVSKTSVN 238 Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSG 303 AA++NI AN + N+KI R+S++EFT+A + REF RL++ ID+ +Y F TIFVDPPR+G Sbjct: 239 AAQWNIEANQITNLKIARLSAEEFTEAYTQNREFRRLQEQGIDLKNYDFSTIFVDPPRAG 298 Query: 304 LDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363 +DD T+ +V + ++LYISCNP++L +L L THTIER ALFDQFP+T H+E GV L Sbjct: 299 VDDETLKLVAQFDNVLYISCNPETLRANLDTLCQTHTIERAALFDQFPFTHHIESGVWLK 358 Query: 364 RK 365 +K Sbjct: 359 KK 360 >gi|296313486|ref|ZP_06863427.1| tRNA (uracil-5-)-methyltransferase [Neisseria polysaccharea ATCC 43768] gi|296840005|gb|EFH23943.1| tRNA (uracil-5-)-methyltransferase [Neisseria polysaccharea ATCC 43768] Length = 367 Score = 389 bits (999), Expect = e-106, Method: Composition-based stats. Identities = 171/369 (46%), Positives = 239/369 (64%), Gaps = 11/369 (2%) Query: 7 IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66 + Y QQL +K DRL+ + P +++ S HYRMRAEF IWH+G ++++ MF++ Sbjct: 1 MSDYTQQLQDKKDRLKTLFAGLDFPEWEVYESPDKHYRMRAEFRIWHEGSEMFYAMFEKG 60 Query: 67 TK----ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122 K +R D F S +N LM E++A LR + + +++L++ S + +VT+I Sbjct: 61 QKASGASLIRCDRFEAASEAVNRLMPELIAVAAQSAELRNRWYAVEFLSTLSGEMLVTMI 120 Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182 YH+ LD+ W + A ++ I +IGR+ KI L +DY E L V R YRQ Sbjct: 121 YHKRLDNEWMQAAQA-----LQQQLDISVIGRSRGQKIVLKQDYATETLKVGNRDFRYRQ 175 Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 IE SFTQPNA + MLEW A +G+ GDLLELYCGNGNF+L L+ F+RVLA EI+K Sbjct: 176 IEGSFTQPNAAVCQKMLEWACGAAEGLDGDLLELYCGNGNFTLPLSEKFERVLATEISKT 235 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPP 300 SV AA++NI AN + N+KI R+S++EFT+A +REF RLKD I + Y F TIFVDPP Sbjct: 236 SVSAAQWNIEANRIGNIKITRLSAEEFTEAYTGKREFKRLKDGGIALTDYAFSTIFVDPP 295 Query: 301 RSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360 R+G+D+ T+ +V + +I+YISCNP++L +L L THT+ER ALFDQFP+T H+E GV Sbjct: 296 RAGIDEETLKLVSQFDNIIYISCNPETLRANLDTLVETHTVERAALFDQFPFTHHIESGV 355 Query: 361 LLVRKPSGW 369 LL +K G Sbjct: 356 LLKKKILGK 364 >gi|59801680|ref|YP_208392.1| tRNA (uracil-5-)-methyltransferase [Neisseria gonorrhoeae FA 1090] gi|194099095|ref|YP_002002180.1| tRNA (uracil-5-)-methyltransferase [Neisseria gonorrhoeae NCCP11945] gi|239999401|ref|ZP_04719325.1| tRNA (uracil-5-)-methyltransferase [Neisseria gonorrhoeae 35/02] gi|240014578|ref|ZP_04721491.1| tRNA (uracil-5-)-methyltransferase [Neisseria gonorrhoeae DGI18] gi|240017023|ref|ZP_04723563.1| tRNA (uracil-5-)-methyltransferase [Neisseria gonorrhoeae FA6140] gi|240081341|ref|ZP_04725884.1| tRNA (uracil-5-)-methyltransferase [Neisseria gonorrhoeae FA19] gi|240113550|ref|ZP_04728040.1| tRNA (uracil-5-)-methyltransferase [Neisseria gonorrhoeae MS11] gi|240116100|ref|ZP_04730162.1| tRNA (uracil-5-)-methyltransferase [Neisseria gonorrhoeae PID18] gi|240118384|ref|ZP_04732446.1| tRNA (uracil-5-)-methyltransferase [Neisseria gonorrhoeae PID1] gi|240121100|ref|ZP_04734062.1| tRNA (uracil-5-)-methyltransferase [Neisseria gonorrhoeae PID24-1] gi|240123929|ref|ZP_04736885.1| tRNA (uracil-5-)-methyltransferase [Neisseria gonorrhoeae PID332] gi|240126129|ref|ZP_04739015.1| tRNA (uracil-5-)-methyltransferase [Neisseria gonorrhoeae SK-92-679] gi|240128606|ref|ZP_04741267.1| tRNA (uracil-5-)-methyltransferase [Neisseria gonorrhoeae SK-93-1035] gi|254494120|ref|ZP_05107291.1| tRNA (uracil-5-)-methyltransferase [Neisseria gonorrhoeae 1291] gi|260440090|ref|ZP_05793906.1| tRNA (uracil-5-)-methyltransferase [Neisseria gonorrhoeae DGI2] gi|268595221|ref|ZP_06129388.1| tRNA (uracil-5-)-methyltransferase [Neisseria gonorrhoeae 35/02] gi|268597443|ref|ZP_06131610.1| tRNA (uracil-5-)-methyltransferase [Neisseria gonorrhoeae FA19] gi|268599615|ref|ZP_06133782.1| tRNA (uracil-5-)-methyltransferase [Neisseria gonorrhoeae MS11] gi|268601766|ref|ZP_06135933.1| tRNA (uracil-5-)-methyltransferase [Neisseria gonorrhoeae PID18] gi|268604096|ref|ZP_06138263.1| tRNA (uracil-5-)-methyltransferase [Neisseria gonorrhoeae PID1] gi|268682554|ref|ZP_06149416.1| tRNA (uracil-5-)-methyltransferase [Neisseria gonorrhoeae PID332] gi|268684715|ref|ZP_06151577.1| tRNA (uracil-5-)-methyltransferase [Neisseria gonorrhoeae SK-92-679] gi|268686994|ref|ZP_06153856.1| tRNA (uracil-5-)-methyltransferase [Neisseria gonorrhoeae SK-93-1035] gi|291043378|ref|ZP_06569101.1| tRNA (uracil-5-)-methyltransferase [Neisseria gonorrhoeae DGI2] gi|293398682|ref|ZP_06642860.1| tRNA (uracil-5-)-methyltransferase [Neisseria gonorrhoeae F62] gi|75432439|sp|Q5F757|TRMA_NEIG1 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|262827706|sp|B4RN45|TRMA_NEIG2 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|59718575|gb|AAW89980.1| putative tRNA (uracil-5-)-methyltransferase [Neisseria gonorrhoeae FA 1090] gi|193934385|gb|ACF30209.1| tRNA (uracil-5-)-methyltransferase [Neisseria gonorrhoeae NCCP11945] gi|226513160|gb|EEH62505.1| tRNA (uracil-5-)-methyltransferase [Neisseria gonorrhoeae 1291] gi|268548610|gb|EEZ44028.1| tRNA (uracil-5-)-methyltransferase [Neisseria gonorrhoeae 35/02] gi|268551231|gb|EEZ46250.1| tRNA (uracil-5-)-methyltransferase [Neisseria gonorrhoeae FA19] gi|268583746|gb|EEZ48422.1| tRNA (uracil-5-)-methyltransferase [Neisseria gonorrhoeae MS11] gi|268585897|gb|EEZ50573.1| tRNA (uracil-5-)-methyltransferase [Neisseria gonorrhoeae PID18] gi|268588227|gb|EEZ52903.1| tRNA (uracil-5-)-methyltransferase [Neisseria gonorrhoeae PID1] gi|268622838|gb|EEZ55238.1| tRNA (uracil-5-)-methyltransferase [Neisseria gonorrhoeae PID332] gi|268624999|gb|EEZ57399.1| tRNA (uracil-5-)-methyltransferase [Neisseria gonorrhoeae SK-92-679] gi|268627278|gb|EEZ59678.1| tRNA (uracil-5-)-methyltransferase [Neisseria gonorrhoeae SK-93-1035] gi|291012984|gb|EFE04967.1| tRNA (uracil-5-)-methyltransferase [Neisseria gonorrhoeae DGI2] gi|291611153|gb|EFF40250.1| tRNA (uracil-5-)-methyltransferase [Neisseria gonorrhoeae F62] gi|317164649|gb|ADV08190.1| tRNA (uracil-5-)-methyltransferase [Neisseria gonorrhoeae TCDC-NG08107] Length = 362 Score = 389 bits (999), Expect = e-106, Method: Composition-based stats. Identities = 172/365 (47%), Positives = 240/365 (65%), Gaps = 11/365 (3%) Query: 7 IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66 ++ Y QQL K D L+ + VP +++ S HYRMRAEF IWH+G ++++ MF++ Sbjct: 1 MNDYTQQLQGKKDYLKTLFAGLDVPEWEVYESPDKHYRMRAEFRIWHEGGEMFYAMFEKG 60 Query: 67 TK----ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122 K +R D F S +N LM E++A LR + +++L++ S + +VT+I Sbjct: 61 QKASGASLIRCDRFDAASEAVNCLMPELIAVAAQSAELRNHWYAVEFLSTLSGEMLVTMI 120 Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182 YH+ LDD W + A L+ L I +IGR+ KI L +DYV E L V R YRQ Sbjct: 121 YHKRLDDEWMKAAQALQQQL-----DISVIGRSRGQKIVLKQDYVTETLRVGDRDFHYRQ 175 Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 IE SFTQPNA + MLEW A +G+ GDLLELYCGNGNF+L L+R+F +VLA EI+K Sbjct: 176 IEGSFTQPNAAVCRKMLEWACRAAEGLGGDLLELYCGNGNFTLPLSRYFRQVLATEISKT 235 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPP 300 SV AA++NI AN + N+KI R+S++EFT+A +REF RLK+ I + Y F TIFVDPP Sbjct: 236 SVSAAQWNIEANWIGNIKIARLSAEEFTEAYTGKREFTRLKESGIVLTDYAFSTIFVDPP 295 Query: 301 RSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360 R+G+D+ T+ +V + +I+YISCNP++L +L L+ THT+ R ALFDQFP+T H+E GV Sbjct: 296 RAGIDEETLKLVSQFDNIIYISCNPETLRANLDTLTETHTVGRAALFDQFPFTHHIESGV 355 Query: 361 LLVRK 365 LL +K Sbjct: 356 LLKKK 360 >gi|26991338|ref|NP_746763.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas putida KT2440] gi|50401549|sp|Q88E14|TRMA_PSEPK RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|24986400|gb|AAN70227.1|AE016662_3 tRNA (uracil-5-)-methyltransferase [Pseudomonas putida KT2440] gi|313500558|gb|ADR61924.1| TrmA [Pseudomonas putida BIRD-1] Length = 361 Score = 389 bits (999), Expect = e-106, Method: Composition-based stats. Identities = 168/366 (45%), Positives = 229/366 (62%), Gaps = 6/366 (1%) Query: 1 MSGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60 MS Y QL KV RLR+++ F P +F S HYR+RAEF +W + ++ Sbjct: 1 MSAAFDPSSYATQLDAKVARLRELLAPFGAPEPAVFDSPREHYRLRAEFRLWREDGQRHY 60 Query: 61 IMFDQQ-TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119 MF + + ID F S INALM + A + L +LFQ+++LT+ + A++ Sbjct: 61 AMFAPGEKHKAILIDDFPIASERINALMPRLKAAWQASEELGNRLFQVEFLTTLAGDAMI 120 Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179 T+ YHR LD+AW A +L +AL + +IGR+ ++ + RDY E+L VAGR Sbjct: 121 TMCYHRPLDEAWEVEARQLAEAL-----GVSVIGRSKGKRLVIGRDYAVEKLDVAGRVFS 175 Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEI 239 YRQ E +FTQPN +N ML W A + DLLELYCGNGNF+L LA +VLA EI Sbjct: 176 YRQPEGAFTQPNGAVNQKMLSWAFEAIGEREDDLLELYCGNGNFTLPLATRVRQVLATEI 235 Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299 +K SV AA N+ N V+NV++VR+S++E TQA+ R F RL+ ID+ SY+F T+FVDP Sbjct: 236 SKTSVNAALSNLDENAVDNVRLVRLSAEELTQALNEVRPFRRLEGIDLKSYQFGTVFVDP 295 Query: 300 PRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359 PR+G+D T + + + ILYISCNP++L +++ L TH IER ALFDQFPYT HME G Sbjct: 296 PRAGMDPDTCELTRRFERILYISCNPETLAANIAQLQDTHRIERCALFDQFPYTHHMESG 355 Query: 360 VLLVRK 365 VLLVR+ Sbjct: 356 VLLVRR 361 >gi|218768699|ref|YP_002343211.1| tRNA (uracil-5-)-methyltransferase [Neisseria meningitidis Z2491] gi|304386842|ref|ZP_07369106.1| tRNA (uracil-5-)-methyltransferase [Neisseria meningitidis ATCC 13091] gi|20178169|sp|Q9JT82|TRMA_NEIMA RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|121052707|emb|CAM09050.1| tRNA (uracil-5-)-methyltransferase [Neisseria meningitidis Z2491] gi|304339096|gb|EFM05186.1| tRNA (uracil-5-)-methyltransferase [Neisseria meningitidis ATCC 13091] gi|319410932|emb|CBY91327.1| tRNA (uracil-5-)-methyltransferase (tRNA(M-5-U54)-methyltransferase; RUMT) [Neisseria meningitidis WUE 2594] Length = 362 Score = 388 bits (998), Expect = e-106, Method: Composition-based stats. Identities = 169/365 (46%), Positives = 236/365 (64%), Gaps = 11/365 (3%) Query: 7 IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66 + Y QQL +K D L+ + VP +++ S HYRMRAEF IWH+G ++++ MF++ Sbjct: 1 MSDYTQQLQDKKDHLKTLFAGLDVPEWEVYESPDKHYRMRAEFRIWHEGGEMFYAMFEKG 60 Query: 67 TK----ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122 K +R D F S +N LM E++A LR + + +++L++ S + +VT+I Sbjct: 61 QKAGGASLIRCDRFEAASEAVNRLMPELIAVAAQSAELRNRWYAVEFLSTLSGEMLVTMI 120 Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182 YH+ LDD W + A ++ +IGR+ KI L +DYV E L V R YRQ Sbjct: 121 YHKRLDDEWMQAAQA-----LQQQLDTSVIGRSRGQKIVLKQDYVTETLKVGNRDFRYRQ 175 Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 IE FTQPNA + MLEW A +G+ GDLLELYCGNGNF+L L+ F+RVLA EI+K Sbjct: 176 IEGGFTQPNAAVCQKMLEWACGAAEGLGGDLLELYCGNGNFTLPLSEKFERVLATEISKT 235 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPP 300 SV AA++NI AN + N+KI R+S++EFT+A +REF RLKD I + Y F TIFVDPP Sbjct: 236 SVGAAQWNIEANGIGNIKIARLSAEEFTEAYTGKREFARLKDGGIALTDYAFSTIFVDPP 295 Query: 301 RSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360 R+G+D+ T+ +V + +I+YISCNP++L +L L TH +ER ALFDQFP+T H+E GV Sbjct: 296 RAGIDEETLKLVSQFDNIIYISCNPETLRANLDTLVETHVVERAALFDQFPFTHHIESGV 355 Query: 361 LLVRK 365 LL +K Sbjct: 356 LLKKK 360 >gi|325205604|gb|ADZ01057.1| tRNA (uracil-5-)-methyltransferase [Neisseria meningitidis M04-240196] Length = 362 Score = 388 bits (997), Expect = e-106, Method: Composition-based stats. Identities = 169/365 (46%), Positives = 237/365 (64%), Gaps = 11/365 (3%) Query: 7 IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66 + Y QQL +K D L+ + VP +++ S HYRMRAEF IWH+G ++++ MF++ Sbjct: 1 MSDYTQQLQDKKDHLKTLFAGLDVPEWEVYESPDKHYRMRAEFRIWHEGGEMFYAMFEKG 60 Query: 67 TK----ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122 K +R D F S +N LM E++A LR + + +++L++ S + +VT+I Sbjct: 61 QKAGGASLIRCDRFDAASEAVNCLMPELIAVAAQSAELRNRWYAVEFLSTLSGEMLVTMI 120 Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182 YH+ LDD W + A ++ +IGR+ KI L +DYV E L V R YRQ Sbjct: 121 YHKRLDDEWMQAAQA-----LQQQLDTSVIGRSRGQKIVLKQDYVTETLKVGNRDFRYRQ 175 Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 IE FTQPNA + MLEW A +G+ GDLLELYCGNGNF+L L+ F+RVLA EI+K Sbjct: 176 IEGGFTQPNAAVCQKMLEWACGAAEGLDGDLLELYCGNGNFTLPLSEKFERVLATEISKT 235 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPP 300 SV AA++NI AN + N+KI R+S++EFT+A +REF RLKD I + Y F TIFVDPP Sbjct: 236 SVSAAQWNIEANRIGNIKIARLSAEEFTEAYTGKREFKRLKDGGIALTDYAFSTIFVDPP 295 Query: 301 RSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360 R+G+D+ T+ +V + +I+YISCNP++L +L L+ TH +ER ALFDQFP+T H+E GV Sbjct: 296 RAGIDEETLKLVSQFDNIIYISCNPETLRANLDTLAETHAVERAALFDQFPFTHHIESGV 355 Query: 361 LLVRK 365 LL +K Sbjct: 356 LLKKK 360 >gi|237801466|ref|ZP_04589927.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas syringae pv. oryzae str. 1_6] gi|331024325|gb|EGI04382.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas syringae pv. oryzae str. 1_6] Length = 361 Score = 388 bits (997), Expect = e-106, Method: Composition-based stats. Identities = 168/366 (45%), Positives = 225/366 (61%), Gaps = 6/366 (1%) Query: 1 MSGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60 MS + Y++QL EK RLR+++ F P Q+F S HYR+RAEF +W + Y+ Sbjct: 1 MSVSFDPASYDRQLEEKTVRLRELLAPFDAPEPQVFDSPREHYRLRAEFRLWREDQKRYY 60 Query: 61 IMFDQQT-KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119 MF K + ++ S INALM + L KLFQ+D+LT+ + A++ Sbjct: 61 AMFAPGDNKTPILLEGLPIASERINALMPVLRERWEASLTLNHKLFQVDFLTTLAGDAMI 120 Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179 TL YHR LDD W A L L + +IGR+ K+ + DYV E+L VAGRT Sbjct: 121 TLCYHRPLDDQWMAEAETLAKEL-----DVSVIGRSKGQKLIIGHDYVTEKLDVAGRTFS 175 Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEI 239 YRQ E +FTQPN +N ML W A + DLLELYCGNGNF+L LA +VLA EI Sbjct: 176 YRQPEGAFTQPNGTVNGKMLNWAFDALGEREDDLLELYCGNGNFTLPLATRVRKVLATEI 235 Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299 +K SV AA N+ N V+NV +VR+S++E T+A+ R F RLK +D+ SY F ++FVDP Sbjct: 236 SKTSVNAALSNLDDNGVDNVTLVRLSAEELTEALNEVRPFRRLKGVDLKSYDFGSVFVDP 295 Query: 300 PRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359 PR+G+D T + + + ILYISCNP++L +++ L TH +ER ALFDQFPYT HME G Sbjct: 296 PRAGMDADTCELTRRFERILYISCNPETLAANIAQLHDTHRVERCALFDQFPYTHHMESG 355 Query: 360 VLLVRK 365 VLLVR+ Sbjct: 356 VLLVRR 361 >gi|308389801|gb|ADO32121.1| tRNA (uracil-5-)-methyltransferase [Neisseria meningitidis alpha710] Length = 362 Score = 388 bits (997), Expect = e-106, Method: Composition-based stats. Identities = 170/365 (46%), Positives = 239/365 (65%), Gaps = 11/365 (3%) Query: 7 IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66 + Y QQL +K D L+ + VP +++ S HYRMRAEF IWH+G ++++ MF++ Sbjct: 1 MSDYTQQLQDKKDHLKTLFAGLDVPEWEVYESPDKHYRMRAEFRIWHEGGEMFYAMFEKG 60 Query: 67 TK----ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122 K +R D F S +N LM E++A LR + + +++L++ S + +VT+I Sbjct: 61 QKAGGASLIRCDRFEAASEAVNRLMPELIAVAAQSAELRNRWYAVEFLSTLSGEMLVTMI 120 Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182 YH+ LD+ W + A ++ I +IGR+ KI L +DYV E L V R YRQ Sbjct: 121 YHKRLDNEWMQAAQA-----LQQQLDISVIGRSRGQKIVLKQDYVTETLKVGNRDFRYRQ 175 Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 IE SFTQPNA + MLEW A +G+ GDLLELYCGNGNF+L L+ F+RVLA EI+K Sbjct: 176 IEGSFTQPNAAVCQKMLEWACGAAEGLDGDLLELYCGNGNFTLPLSEKFERVLATEISKT 235 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPP 300 S+ AA++NI AN + N+KI R+S++EFT+A R+REF RLKD I + Y F TIFVDPP Sbjct: 236 SISAAQWNIEANRIGNIKIARLSAEEFTEAYTRKREFKRLKDGGIALTDYAFSTIFVDPP 295 Query: 301 RSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360 R+G+D+ T+ +V + +I+YISCNP++L +L L TH +ER ALFDQFP+T H+E GV Sbjct: 296 RAGIDEETLKLVSQFDNIIYISCNPETLRANLDTLVETHAVERAALFDQFPFTHHIESGV 355 Query: 361 LLVRK 365 LL +K Sbjct: 356 LLKKK 360 >gi|330938145|gb|EGH41857.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas syringae pv. pisi str. 1704B] Length = 361 Score = 388 bits (997), Expect = e-106, Method: Composition-based stats. Identities = 167/366 (45%), Positives = 223/366 (60%), Gaps = 6/366 (1%) Query: 1 MSGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60 MS Y++QL EK RLR+++ F P Q+F S HYR+RAEF +W + Y+ Sbjct: 1 MSVPFDPASYDRQLEEKTVRLRELLAPFDAPEPQVFDSPREHYRLRAEFRLWREDQKRYY 60 Query: 61 IMFDQQTKE-RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119 MF + ++ S INALM + P L KLFQ+D+LT+ + A++ Sbjct: 61 AMFAPGDNRTPILLEGLPIASERINALMPVLRERWEASPTLNHKLFQVDFLTTLAGDAMI 120 Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179 TL YHR LD W+ +L L + LIGR+ K+ + DYV E+L VAGRT Sbjct: 121 TLCYHRPLDAEWQAAVEQLAAEL-----DVSLIGRSKGQKLVIGHDYVTEKLDVAGRTFS 175 Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEI 239 YRQ E +FTQPN +N ML W A Q DLLELYCGNGNF+L LA +VLA EI Sbjct: 176 YRQPEGAFTQPNGTVNGKMLNWAFDALGERQDDLLELYCGNGNFTLPLASRVRKVLATEI 235 Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299 +K SV AA N+ N V+NV +VR+S++E T+A+ R F RL +D+ SY F ++FVDP Sbjct: 236 SKTSVNAALSNLDDNGVDNVTLVRLSAEELTEALNEVRPFRRLHGVDLKSYDFGSVFVDP 295 Query: 300 PRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359 PR+G+D T + + + ILYISCNP++L +++ L TH +ER ALFDQFPYT HME G Sbjct: 296 PRAGMDPDTCELTRRFERILYISCNPETLAANIAQLHDTHRVERCALFDQFPYTHHMESG 355 Query: 360 VLLVRK 365 VLLVR+ Sbjct: 356 VLLVRR 361 >gi|325142850|gb|EGC65218.1| tRNA (uracil-5-)-methyltransferase [Neisseria meningitidis 961-5945] Length = 362 Score = 388 bits (997), Expect = e-106, Method: Composition-based stats. Identities = 168/365 (46%), Positives = 238/365 (65%), Gaps = 11/365 (3%) Query: 7 IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66 + Y QQL +K D L+ + VP +++ S HYRMRAEF IWH+G ++++ MF++ Sbjct: 1 MSDYTQQLQDKKDHLKTLFAGLDVPEWEVYESPDKHYRMRAEFRIWHEGGEMFYAMFEKG 60 Query: 67 TK----ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122 K +R D F S +N LM E++A LR + + +++L++ S + +VT+I Sbjct: 61 QKAGGASLIRCDRFEAASEAVNRLMPELIAVAAQSAELRNRWYAVEFLSTLSGEMLVTMI 120 Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182 YH+ LD+ W + A ++ I +IGR+ KI L +DYV E L V R YRQ Sbjct: 121 YHKRLDNEWMQAAQA-----LQQQLDISVIGRSRGQKIVLKQDYVTETLKVGNRDFHYRQ 175 Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 IE FTQPNA + MLEW A +G+ GDLLELYCGNGNF+L L+ F+RVLA EI+K Sbjct: 176 IEGGFTQPNAAVCRKMLEWACRAAEGLGGDLLELYCGNGNFTLPLSEKFERVLATEISKT 235 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPP 300 S+ AA++NI AN + N+KI R+S++EFT+A +REF RLKD I + Y F TIFVDPP Sbjct: 236 SISAAQWNIEANGIGNIKIARLSAEEFTEAYTGKREFKRLKDGGIALTDYAFSTIFVDPP 295 Query: 301 RSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360 R+G+D+ T+ +V + +I+YISCNP++L +L L+ TH +ER ALFDQFP+T H+E GV Sbjct: 296 RAGIDEETLKLVSQFDNIIYISCNPETLRANLDTLAETHAVERAALFDQFPFTHHIESGV 355 Query: 361 LLVRK 365 LL +K Sbjct: 356 LLKKK 360 >gi|325128707|gb|EGC51571.1| tRNA (uracil-5-)-methyltransferase [Neisseria meningitidis N1568] gi|325134787|gb|EGC57424.1| tRNA (uracil-5-)-methyltransferase [Neisseria meningitidis M13399] Length = 362 Score = 388 bits (996), Expect = e-105, Method: Composition-based stats. Identities = 169/365 (46%), Positives = 238/365 (65%), Gaps = 11/365 (3%) Query: 7 IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66 + Y QQL +K D L+ + VP +++ S HYRMRAEF IWH+G ++++ MF++ Sbjct: 1 MSDYTQQLQDKKDHLKTLFAGLDVPEWEVYESPDKHYRMRAEFRIWHEGGEMFYAMFEKG 60 Query: 67 TK----ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122 K +R D F S +N LM E++A LR + + +++L++ S + +VT+I Sbjct: 61 QKAGGASLIRCDRFEAASEAVNRLMPELIAVAAQSAELRNRWYAVEFLSTLSGEMLVTMI 120 Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182 YH+ LD+ W + A ++ I +IGR+ KI L +DYV E L V R YRQ Sbjct: 121 YHKRLDNEWMQAAQA-----LQQQLDISVIGRSRGQKIVLKQDYVTETLKVGNRDFRYRQ 175 Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 IE SFTQPNA + MLEW A +G+ GDLLELYCGNGNF+L L+ F+RVLA EI+K Sbjct: 176 IEGSFTQPNAAVCQKMLEWACGAAEGLDGDLLELYCGNGNFTLPLSEKFERVLATEISKT 235 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPP 300 S+ AA++NI AN + N+KI R+S++EFT+A +REF RLKD I + Y F TIFVDPP Sbjct: 236 SISAAQWNIEANRIGNIKIARLSAEEFTEAYTGKREFKRLKDGGIALTDYAFSTIFVDPP 295 Query: 301 RSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360 R+G+D+ T+ +V + +I+YISCNP++L +L L TH +ER ALFDQFP+T H+E GV Sbjct: 296 RAGIDEETLKLVSQFDNIIYISCNPETLRANLDTLVETHAVERAALFDQFPFTHHIESGV 355 Query: 361 LLVRK 365 LL +K Sbjct: 356 LLKKK 360 >gi|119478185|ref|ZP_01618241.1| tRNA (uracil-5-)-methyltransferase [marine gamma proteobacterium HTCC2143] gi|119448694|gb|EAW29938.1| tRNA (uracil-5-)-methyltransferase [marine gamma proteobacterium HTCC2143] Length = 380 Score = 388 bits (996), Expect = e-105, Method: Composition-based stats. Identities = 177/358 (49%), Positives = 255/358 (71%), Gaps = 6/358 (1%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQT-K 68 Y QQL K D + F P L IF S +HYR+RAEF IWH+GDD ++ MF++ K Sbjct: 24 YSQQLQTKADLITSRFADFDAPALTIFNSPALHYRVRAEFKIWHEGDDSFYAMFNKAAPK 83 Query: 69 ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLD 128 + +RID F GS LIN+LM ++M+ IR + +LR KLFQ+++LT+ S ++++T+IYH+ L+ Sbjct: 84 QPVRIDTFPIGSELINSLMSKLMSEIRSDSMLRLKLFQVEFLTTLSGESLITMIYHKPLN 143 Query: 129 DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFT 188 D WR A L+ L R +IGR+ K ++ L +D V E LTV GR +Y+Q+ENSFT Sbjct: 144 DDWRRLAEILQQKLDTR-----IIGRSKKQRMVLSQDCVTETLTVDGRQYLYQQVENSFT 198 Query: 189 QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248 QPNA +N ML W L ++ + GDL+ELYCGNGNF+ VLA +FD+VLA EI+K SV++A+ Sbjct: 199 QPNAQVNQKMLSWALTSSADLGGDLVELYCGNGNFTAVLAANFDKVLATEISKTSVKSAQ 258 Query: 249 YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDAT 308 +N N +NNV I RMS++EF+ A+ +R F RLKD+D+ SY F T+ VDPPR+GLD AT Sbjct: 259 HNFEMNGINNVHIARMSAEEFSSALAGDRTFRRLKDVDLSSYTFSTVLVDPPRAGLDTAT 318 Query: 309 VGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRKP 366 ++ + +ILYISCNP++L ++++ L+ TH I ++A+FDQFPYT H+ECG++L ++ Sbjct: 319 TQLISRFDNILYISCNPETLYQNVADLNKTHRITKIAIFDQFPYTDHIECGIMLKKRD 376 >gi|325130700|gb|EGC53439.1| tRNA (uracil-5-)-methyltransferase [Neisseria meningitidis OX99.30304] gi|325136672|gb|EGC59272.1| tRNA (uracil-5-)-methyltransferase [Neisseria meningitidis M0579] gi|325201664|gb|ADY97118.1| tRNA (uracil-5-)-methyltransferase [Neisseria meningitidis M01-240149] gi|325208601|gb|ADZ04053.1| tRNA (uracil-5-)-methyltransferase [Neisseria meningitidis NZ-05/33] Length = 362 Score = 387 bits (995), Expect = e-105, Method: Composition-based stats. Identities = 170/365 (46%), Positives = 239/365 (65%), Gaps = 11/365 (3%) Query: 7 IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66 ++ Y QQL K D L+ + VP +++ S HYRMRAEF IWH+G ++++ MF++ Sbjct: 1 MNDYTQQLQGKKDYLKTLFAGLDVPEWEVYESPDKHYRMRAEFRIWHEGGEMFYAMFEKG 60 Query: 67 TKER----MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122 K +R D F S +N LM E++A P L+ + + +++L++ S + +VT+I Sbjct: 61 QKASGASMIRCDRFEAASEAVNRLMPELIAAAAQSPELKKRWYAVEFLSTLSGEMLVTMI 120 Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182 YH+ LD W + A ++ I +IGR+ KI L +DYV E L V R YRQ Sbjct: 121 YHKRLDAEWMQAAQA-----LQQQLDISVIGRSRGQKIVLKQDYVTETLKVGNRDFRYRQ 175 Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 IE SFTQPNA + MLEW A +G+ GDLLELYCGNGNF+L L+ F+RVLA EI+K Sbjct: 176 IEGSFTQPNAAVCQKMLEWACGAAEGLDGDLLELYCGNGNFTLPLSEKFERVLATEISKT 235 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPP 300 S+ AA++NI AN + N+KI R+S++EFT+A R+REF RLKD I + Y F TIFVDPP Sbjct: 236 SISAAQWNIEANRIGNIKIARLSAEEFTEAYTRKREFKRLKDGGIALTDYAFSTIFVDPP 295 Query: 301 RSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360 R+G+D+ T+ +V + +I+YISCNP++L +L L TH +ER ALFDQFP+T H+E GV Sbjct: 296 RAGIDEETLKLVSQFDNIIYISCNPETLRANLDTLVETHAVERAALFDQFPFTHHIESGV 355 Query: 361 LLVRK 365 LL +K Sbjct: 356 LLKKK 360 >gi|294650226|ref|ZP_06727599.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter haemolyticus ATCC 19194] gi|292823883|gb|EFF82713.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter haemolyticus ATCC 19194] Length = 361 Score = 387 bits (994), Expect = e-105, Method: Composition-based stats. Identities = 175/365 (47%), Positives = 245/365 (67%), Gaps = 11/365 (3%) Query: 6 LIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF-- 63 + Y+QQL EKV+R+ F P L++F+S H+RMRAEF +WH DDL++ MF Sbjct: 1 MTVSYQQQLQEKVERITAQFAPFNPPALEVFQSPEQHFRMRAEFRLWHTDDDLFYAMFER 60 Query: 64 --DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTL 121 D + K +RI+ F IN LM ++ ++ P+L ++F+ D+L + + +VTL Sbjct: 61 AEDGKQKTVIRINEFPIADQSINDLMPRLLEELKAVPILSQRIFEADFLATLCGEMLVTL 120 Query: 122 IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYR 181 IYHR LD W A L + L+ I+++GR+ K+ + DYV E+L V GR Y+ Sbjct: 121 IYHRRLDSEWEAAAKTLAEKLN-----IKIMGRSRGQKVIVGDDYVVEQLNVHGRIFKYK 175 Query: 182 QIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241 QIE+SFTQPNA + HMLEW A + Q DLLELYCGNGNF+L L+ F+RVLA E+AK Sbjct: 176 QIESSFTQPNAQVCKHMLEWACDAAQNSQKDLLELYCGNGNFTLPLSLKFNRVLATELAK 235 Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDP 299 SV AA++NI N + N+++ R+S++EFTQA + EREF RL++ IDI SY+F TIFVDP Sbjct: 236 SSVYAAQWNIEQNQIENIQVARLSAEEFTQAYQGEREFRRLQEANIDIQSYQFDTIFVDP 295 Query: 300 PRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359 PR+G+DDAT+ ++Q + I+YISCNPD+L +L L+ TH I + ALFDQFP+T H+E G Sbjct: 296 PRAGIDDATLTLMQGFERIIYISCNPDTLHDNLKTLTQTHRISKFALFDQFPFTHHIESG 355 Query: 360 VLLVR 364 VLL + Sbjct: 356 VLLEK 360 >gi|298369430|ref|ZP_06980748.1| tRNA (uracil-5-)-methyltransferase [Neisseria sp. oral taxon 014 str. F0314] gi|298283433|gb|EFI24920.1| tRNA (uracil-5-)-methyltransferase [Neisseria sp. oral taxon 014 str. F0314] Length = 362 Score = 386 bits (992), Expect = e-105, Method: Composition-based stats. Identities = 163/362 (45%), Positives = 238/362 (65%), Gaps = 11/362 (3%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTK- 68 Y+QQL +K D L+++ P +++F S HYRMRAEF IWH+G ++++ MF++ K Sbjct: 4 YQQQLRDKTDYLKKLFQGLDFPEIEVFESPEQHYRMRAEFRIWHEGGEMFYAMFERGQKA 63 Query: 69 ---ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHR 125 +R D F S INALM +++ P L+ + + ++L++ S + +VT+IYH+ Sbjct: 64 SGASLIRCDQFPAASESINALMPKLIEAAAQNPELKNRWYAAEFLSALSGEMLVTMIYHK 123 Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIEN 185 L +AW+ A L AR+ I +IGR+ KI L + Y+ E L V G+T YRQ+E Sbjct: 124 KLGEAWQRAAEIL-----ARELGIHIIGRSRGQKIVLTQGYITEELNVNGKTFRYRQVEG 178 Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 SFTQPNA + ML W + + GDLLELYCGNGNF+L L+++F +VLA E++K SV Sbjct: 179 SFTQPNARVCEKMLGWACDVAQNLSGDLLELYCGNGNFTLPLSQYFRQVLATEVSKTSVY 238 Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDI--HSYRFKTIFVDPPRSG 303 AA++NI AN +N+KI R+S++EFT+A + REF RL++ I Y F IFVDPPR+G Sbjct: 239 AAQWNIEANQRDNIKIARLSAEEFTKAYTQSREFRRLQEQGILLKDYVFSAIFVDPPRAG 298 Query: 304 LDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363 +D+ T+ +V + +I+YISCNP++L +L L THT++R ALFDQFP+T H+E GV L Sbjct: 299 VDEETLKLVSQFDNIIYISCNPETLRANLDTLCRTHTVKRAALFDQFPFTHHIESGVWLE 358 Query: 364 RK 365 RK Sbjct: 359 RK 360 >gi|15677527|ref|NP_274683.1| tRNA (uracil-5-)-methyltransferase [Neisseria meningitidis MC58] gi|20178170|sp|Q9JYA0|TRMA_NEIMB RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|7226932|gb|AAF42027.1| tRNA (uracil-5-)-methyltransferase [Neisseria meningitidis MC58] gi|316984826|gb|EFV63783.1| tRNA (uracil-5-)-methyltransferase [Neisseria meningitidis H44/76] gi|325140858|gb|EGC63368.1| tRNA (uracil-5-)-methyltransferase [Neisseria meningitidis CU385] gi|325199727|gb|ADY95182.1| tRNA (uracil-5-)-methyltransferase [Neisseria meningitidis H44/76] Length = 362 Score = 386 bits (991), Expect = e-105, Method: Composition-based stats. Identities = 168/365 (46%), Positives = 238/365 (65%), Gaps = 11/365 (3%) Query: 7 IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66 ++ Y QQL K D L+ + VP +++ S HYRMRAEF IWH+G ++++ MF++ Sbjct: 1 MNDYTQQLQGKKDYLKTLFAGLDVPEWEVYESPDKHYRMRAEFRIWHEGGEMFYAMFEKG 60 Query: 67 TKER----MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122 K +R D F S +N LM E++A P L+ + + +++L++ S + +VT+I Sbjct: 61 QKASGASMIRCDRFEAASEAVNRLMPELIAAAAQSPELKKRWYAVEFLSTLSGEMLVTMI 120 Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182 YH+ LD W + A ++ I +IGR+ KI L +DYV E L V R YRQ Sbjct: 121 YHKRLDAEWMQAAQA-----LQQQLDISVIGRSRGQKIVLKQDYVTETLKVGNRDFRYRQ 175 Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 IE SFTQPNA + MLEW +G+ DLLELYCGNGNF+L L+R+F +VLA EI+K Sbjct: 176 IEGSFTQPNAAVCQKMLEWACRTAEGLGSDLLELYCGNGNFTLPLSRYFRQVLATEISKT 235 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPP 300 SV AA++NI AN + N+KI R+S++EFT+A +REF RLKD I + Y F TIFVDPP Sbjct: 236 SVSAAQWNIEANRIGNIKIARLSAEEFTEAYTGKREFKRLKDGGIALTDYAFSTIFVDPP 295 Query: 301 RSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360 R+G+D+ T+ +V + +I+YISCNP++L +L L+ TH +ER ALFDQFP+T H+E GV Sbjct: 296 RAGIDEETLKLVSQFDNIIYISCNPETLRANLDTLAETHAVERAALFDQFPFTHHIESGV 355 Query: 361 LLVRK 365 LL +K Sbjct: 356 LLKKK 360 >gi|307545640|ref|YP_003898119.1| tRNA (uracil-5-)-methyltransferase [Halomonas elongata DSM 2581] gi|307217664|emb|CBV42934.1| tRNA (uracil-5-)-methyltransferase [Halomonas elongata DSM 2581] Length = 368 Score = 386 bits (991), Expect = e-105, Method: Composition-based stats. Identities = 173/363 (47%), Positives = 236/363 (65%), Gaps = 11/363 (3%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD---- 64 +Y++QL K RL + F P L+++ S P HYR R EF +WH+GDDL++ MF+ Sbjct: 10 RYDEQLDAKRARLVETFAPFAPPALEVYPSPPSHYRQRCEFRLWHEGDDLFYAMFEVDPD 69 Query: 65 -QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIY 123 K +R+D + IN LM ++ +R P+LR KLFQ+++LT+ S +A+VTLIY Sbjct: 70 EPGKKRVVRLDDYPVAGRRINELMPRLLDAVRDRPVLRHKLFQVEFLTTLSGEALVTLIY 129 Query: 124 HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQI 183 HR LD+ W E A L AL I +IGRA K + L RD+V E L V GR L Y+Q+ Sbjct: 130 HRQLDEDWDEAARELEQAL-----DIMIIGRARKQRRVLTRDHVWECLEVDGRRLHYQQV 184 Query: 184 ENSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 ENSFTQPNA I ML W T G Q DL+ELYCGN NF++ LA +F RVLA EI++ Sbjct: 185 ENSFTQPNAEICRAMLTWARDVTAGSQQRDLVELYCGNANFTVALADNFRRVLATEISRT 244 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302 SV +AR N+ AN ++NV + RMS++EFTQA++ ++ R++ + Y F T+ VDPPR+ Sbjct: 245 SVASARENLEANGIDNVTVGRMSAEEFTQALKGDKGGRRVEAWALDEYDFSTVLVDPPRA 304 Query: 303 GLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362 GLD+A+ + Y I+YISCNPD+L +L L+ TH + R ALFDQFP+T H ECGVLL Sbjct: 305 GLDEASCRQLSEYERIVYISCNPDTLAHNLETLTQTHAVTRFALFDQFPWTHHCECGVLL 364 Query: 363 VRK 365 R+ Sbjct: 365 ERR 367 >gi|87121190|ref|ZP_01077081.1| tRNA (uracil-5-)-methyltransferase [Marinomonas sp. MED121] gi|86163682|gb|EAQ64956.1| tRNA (uracil-5-)-methyltransferase [Marinomonas sp. MED121] Length = 367 Score = 385 bits (989), Expect = e-105, Method: Composition-based stats. Identities = 178/361 (49%), Positives = 247/361 (68%), Gaps = 6/361 (1%) Query: 7 IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66 IDQY+ QLAEK+ RL ++M +P +IF SE HYRMRAEF IWHDGDD+Y+ MFD Sbjct: 8 IDQYQPQLAEKISRLDELMATLDLPAAEIFESEASHYRMRAEFRIWHDGDDMYYAMFDSN 67 Query: 67 T-KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHR 125 + +R+D F S LIN LM ++ ++ P+LR KLFQ+D+LT+Q+ +A+++++YH+ Sbjct: 68 DPRTPIRVDQFPVASELINELMPALLDAVKTVPVLRHKLFQVDFLTTQTGEALISMLYHK 127 Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIEN 185 +D+ W A L +A IGR+ K K+ L RD+V E LTV G+ Y+Q+EN Sbjct: 128 PIDEDWFAAAQTLNEAFP----HCHFIGRSRKKKMILTRDFVMETLTVNGKKYHYQQVEN 183 Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 SFTQPNAGIN ML W L T+ GDLLE+YCGNGNFS+ LAR FDRV+A EI+K SV Sbjct: 184 SFTQPNAGINESMLSWALDVTQNESGDLLEMYCGNGNFSIPLARRFDRVVATEISKVSVN 243 Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR-LKDIDIHSYRFKTIFVDPPRSGL 304 +A+ NIA N ++NV++V+M+S++ + A+ + E + L + S + VDPPR+GL Sbjct: 244 SAQLNIAINGMSNVQVVKMASEDVSAALNGQTELPKQLIQAGMESLEPSVVLVDPPRAGL 303 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D TV +++ ILYISCNP++L +L LS TH++ER A+FDQFPYT H+E GV LVR Sbjct: 304 DSDTVELIRKVDKILYISCNPETLKANLDALSDTHSVERYAVFDQFPYTHHIETGVYLVR 363 Query: 365 K 365 + Sbjct: 364 R 364 >gi|330873496|gb|EGH07645.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 361 Score = 384 bits (987), Expect = e-104, Method: Composition-based stats. Identities = 166/366 (45%), Positives = 223/366 (60%), Gaps = 6/366 (1%) Query: 1 MSGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60 MS Y++QL EK RLR+++ F P Q+F S HYR+RAEF +W + Y+ Sbjct: 1 MSVPFDPASYDRQLEEKTVRLRELLAPFDAPKPQVFDSPREHYRLRAEFRLWREDQKRYY 60 Query: 61 IMFDQQTKE-RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119 MF + ++ S INALM + P L KLFQ+D+LT+ + A++ Sbjct: 61 AMFAPGDNRTPILLEGLPIASQRINALMPVLRERWEASPTLNHKLFQVDFLTTLAGDAMI 120 Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179 T+ YHR L+D W A L L + LIGR+ ++ + DYV E+L VAGRT Sbjct: 121 TMCYHRPLNDEWLAEAEALAKEL-----DVSLIGRSRGQRLVIGHDYVTEKLDVAGRTFS 175 Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEI 239 YRQ E +FTQPN +N ML W A Q DLLELYCGNGNF+L LA +VLA EI Sbjct: 176 YRQPEGAFTQPNGTVNGKMLNWAFDALGERQDDLLELYCGNGNFTLPLATRVRKVLATEI 235 Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299 +K SV AA N+ N V+NV +VR+S++E T+A+ R F RL+ ID+ SY F ++FVDP Sbjct: 236 SKTSVNAALSNLDDNGVDNVTLVRLSAEELTEALNEVRPFRRLQGIDLKSYDFGSVFVDP 295 Query: 300 PRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359 PR+G+D T + + + ILYISCNP++L +++ L TH +ER ALFDQFPYT HME G Sbjct: 296 PRAGMDPDTCELTRRFERILYISCNPETLAANIAQLHDTHRVERCALFDQFPYTHHMESG 355 Query: 360 VLLVRK 365 VLL R+ Sbjct: 356 VLLARR 361 >gi|330961636|gb|EGH61896.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas syringae pv. maculicola str. ES4326] Length = 361 Score = 384 bits (987), Expect = e-104, Method: Composition-based stats. Identities = 168/366 (45%), Positives = 225/366 (61%), Gaps = 6/366 (1%) Query: 1 MSGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60 MS Y++QL EK RLR+++ F P Q+F S HYR+RAEF +W + Y+ Sbjct: 1 MSVPFDPASYDRQLEEKTVRLRELLAPFDAPEPQVFDSPREHYRLRAEFRLWREDQKRYY 60 Query: 61 IMFDQQTKE-RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119 MF + ++ S INALM + P L KLFQ+D+LT+ + A++ Sbjct: 61 AMFAPGENRTPILLEGLPIASERINALMPVLRERWEASPTLNHKLFQVDFLTTLAGDAMI 120 Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179 T+ YHR LDDAW+ A A+ + LIGR+ K+ + DYV E+L VA RT Sbjct: 121 TMCYHRPLDDAWQAEAEA-----LAQALDVSLIGRSKGQKLVIGHDYVTEKLDVASRTFS 175 Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEI 239 YRQ E +FTQPN +N ML W A Q DLLELYCGNGNF+L LA +VLA EI Sbjct: 176 YRQPEGAFTQPNGTVNGKMLNWAYDALGERQDDLLELYCGNGNFTLPLATRVRKVLATEI 235 Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299 +K SV AA N+ N VNNV +VR+S++E T+A+ R F RL+ +D+ SY F ++FVDP Sbjct: 236 SKTSVNAALSNLDDNGVNNVTLVRLSAEELTEALNEVRPFRRLQGVDLKSYEFGSVFVDP 295 Query: 300 PRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359 PR+G+D T + + + ILYISCNP++L +++ L TH +ER ALFDQFPYT HME G Sbjct: 296 PRAGMDPDTCELTRRFERILYISCNPETLAANIAQLHDTHRVERCALFDQFPYTHHMESG 355 Query: 360 VLLVRK 365 VLLVR+ Sbjct: 356 VLLVRR 361 >gi|261363848|ref|ZP_05976731.1| tRNA (uracil-5-)-methyltransferase [Neisseria mucosa ATCC 25996] gi|288568441|gb|EFC90001.1| tRNA (uracil-5-)-methyltransferase [Neisseria mucosa ATCC 25996] Length = 360 Score = 384 bits (987), Expect = e-104, Method: Composition-based stats. Identities = 167/362 (46%), Positives = 242/362 (66%), Gaps = 11/362 (3%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTK- 68 Y QQL +K+ L+Q+ P +Q+F S HYRMRAEF IWH+G ++++ MF++ K Sbjct: 4 YTQQLDQKIQYLQQLFQGLDFPEIQVFESPEQHYRMRAEFRIWHEGGEMFYAMFERGQKA 63 Query: 69 ---ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHR 125 +R D F S IN LM +++ P L+ + + +++L++ S + +VT+IYH+ Sbjct: 64 SGASLIRCDQFPAASESINTLMPKLIEAATQNPELKKRWYAVEFLSALSSEMLVTMIYHK 123 Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIEN 185 LD+AW+ A L AR+ I +IGR+ KI L +DY+ E L V G+T YRQ+E Sbjct: 124 KLDEAWQRAAETL-----ARELGIHIIGRSRGQKIVLTQDYITEELNVNGKTFRYRQVEG 178 Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 SFTQPNA + ML W + + GDLLELYCGNGNF+L L++HF +VLA E++K SV Sbjct: 179 SFTQPNARVCEKMLGWACDVAQNLSGDLLELYCGNGNFTLPLSQHFHQVLATEVSKTSVY 238 Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSG 303 AA++NI AN +N+KI R+S++EFT+A + R+F+RL++ + + Y F TIFVDPPR+G Sbjct: 239 AAQWNIEANQRDNIKIARLSAEEFTEAYTQSRKFHRLQEQGVSLKDYGFSTIFVDPPRAG 298 Query: 304 LDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363 +DD T+ +V + +I+YISCNP++L +L L THTIER ALFDQFP+T H+E GV L Sbjct: 299 VDDETLKLVSQFDNIIYISCNPETLRANLDTLCQTHTIERAALFDQFPFTHHIESGVYLK 358 Query: 364 RK 365 +K Sbjct: 359 KK 360 >gi|71734845|ref|YP_276461.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas syringae pv. phaseolicola 1448A] gi|257482160|ref|ZP_05636201.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289625706|ref|ZP_06458660.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289647718|ref|ZP_06479061.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas syringae pv. aesculi str. 2250] gi|123635080|sp|Q48DT0|TRMA_PSE14 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|71555398|gb|AAZ34609.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas syringae pv. phaseolicola 1448A] gi|115265670|dbj|BAF32931.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas syringae pv. phaseolicola] gi|320322638|gb|EFW78731.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas syringae pv. glycinea str. B076] gi|320330577|gb|EFW86556.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas syringae pv. glycinea str. race 4] gi|330868981|gb|EGH03690.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330987567|gb|EGH85670.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas syringae pv. lachrymans str. M301315] gi|331011373|gb|EGH91429.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 361 Score = 383 bits (985), Expect = e-104, Method: Composition-based stats. Identities = 166/366 (45%), Positives = 225/366 (61%), Gaps = 6/366 (1%) Query: 1 MSGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60 MS Y++QL EK RLR+++ F P Q+F S HYR+RAEF +W + Y+ Sbjct: 1 MSVPFDPASYDRQLEEKTVRLRELLAPFDAPEPQVFDSPREHYRLRAEFRLWREDQKRYY 60 Query: 61 IMFDQQTKE-RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119 MF + ++ S INALM + P L KLFQ+D+LT+ + A++ Sbjct: 61 AMFAPGDNRTPILLEGLPIASERINALMPVLRERWEASPTLNHKLFQVDFLTTLAGDAMI 120 Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179 T+ YHR LD W+ A + A + + LIGR+ K+ + +DYV E+L VAGRT Sbjct: 121 TMCYHRPLDAEWQAAAEQ-----LAAELNVSLIGRSKGQKLIIGQDYVTEKLDVAGRTFS 175 Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEI 239 YRQ E +FTQPN +N ML W A Q DLLELYCGNGNF+L LA +VLA EI Sbjct: 176 YRQPEGAFTQPNGTVNGKMLNWAFDALGERQDDLLELYCGNGNFTLPLATRVRKVLATEI 235 Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299 +K SV AA N+ N V+NV +VR+S++E T+A+ R F RL +D+ SY F ++FVDP Sbjct: 236 SKTSVNAALSNLDDNGVDNVTLVRLSAEELTEALNEVRPFRRLHGVDLKSYDFGSVFVDP 295 Query: 300 PRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359 PR+G+D T + + + ILYISCNP++L +++ L TH +ER ALFDQFPYT HME G Sbjct: 296 PRAGMDPDTCELTRRFERILYISCNPETLAANIAQLHDTHRVERCALFDQFPYTHHMESG 355 Query: 360 VLLVRK 365 VLLVR+ Sbjct: 356 VLLVRR 361 >gi|330888777|gb|EGH21438.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas syringae pv. mori str. 301020] Length = 361 Score = 383 bits (984), Expect = e-104, Method: Composition-based stats. Identities = 166/366 (45%), Positives = 225/366 (61%), Gaps = 6/366 (1%) Query: 1 MSGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60 MS Y++QL EK RLR+++ F P Q+F S HYR+RAEF +W + Y+ Sbjct: 1 MSVPFDPASYDRQLEEKTVRLRELLAPFDAPEPQVFDSPREHYRLRAEFRLWREDQKRYY 60 Query: 61 IMFDQQTKE-RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119 MF + ++ S INALM + P L KLFQ+D+LT+ + A++ Sbjct: 61 AMFAPGDNRTPILLEGLPIASERINALMPVLRERWEASPTLNHKLFQVDFLTTLAGDAMI 120 Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179 T+ YHR LD W+ A + A + + LIGR+ K+ + +DYV E+L VAGRT Sbjct: 121 TMCYHRPLDAEWQAAAEQ-----LAAELNVSLIGRSKGQKLIIGQDYVTEKLDVAGRTFS 175 Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEI 239 YRQ E +FTQPN +N ML W A Q DLLELYCGNGNF+L LA +VLA EI Sbjct: 176 YRQPEGAFTQPNGTVNGKMLNWAFDALGERQDDLLELYCGNGNFTLPLATRVRKVLATEI 235 Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299 +K SV AA N+ N V+NV +VR+S++E T+A+ R F RL +D+ SY F ++FVDP Sbjct: 236 SKTSVNAALNNLDDNGVDNVTLVRLSAEELTEALNEVRPFRRLHGVDLKSYDFGSVFVDP 295 Query: 300 PRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359 PR+G+D T + + + ILYISCNP++L +++ L TH +ER ALFDQFPYT HME G Sbjct: 296 PRAGMDPDTCELTRRFERILYISCNPETLAANIAQLHDTHRVERCALFDQFPYTHHMESG 355 Query: 360 VLLVRK 365 VLLVR+ Sbjct: 356 VLLVRR 361 >gi|330952946|gb|EGH53206.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas syringae Cit 7] Length = 361 Score = 383 bits (984), Expect = e-104, Method: Composition-based stats. Identities = 167/366 (45%), Positives = 224/366 (61%), Gaps = 6/366 (1%) Query: 1 MSGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60 MS Y++QL EK RLR+++ F P Q+F S HYR+RAEF +W + Y+ Sbjct: 1 MSVPFDPASYDRQLEEKTVRLRELLAPFDAPEPQVFDSPREHYRLRAEFRLWREDQKRYY 60 Query: 61 IMFDQQTKE-RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119 MF + ++ S INALM + P L KLFQ+D+LT+ + A++ Sbjct: 61 AMFAPGDNRTPILLEGLPIASERINALMPVLRERWEASPTLNHKLFQVDFLTTLAGDAMI 120 Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179 TL YHR LD W+ A + A + + LIGR+ K+ + DYV E+L VAGRT Sbjct: 121 TLCYHRPLDAEWQAAAEQ-----LAAELDVSLIGRSKGQKLVIGHDYVTEKLDVAGRTFS 175 Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEI 239 YRQ E +FTQPN +N ML W A Q DLLELYCGNGNF+L LA +VLA EI Sbjct: 176 YRQPEGAFTQPNGTVNGKMLNWAFDALGERQDDLLELYCGNGNFTLPLATRVRKVLATEI 235 Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299 +K SV AA N+ N V+NV +VR+S++E T+A+ R F RL +D+ SY F ++FVDP Sbjct: 236 SKTSVNAALSNLDDNGVDNVTLVRLSAEELTEALNEVRPFRRLHGVDLKSYDFGSVFVDP 295 Query: 300 PRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359 PR+G+D T + + + ILYISCNP++L +++ L TH +ER ALFDQFPYT HME G Sbjct: 296 PRAGMDPETCELTRRFERILYISCNPETLAANIAQLHDTHRVERCALFDQFPYTHHMESG 355 Query: 360 VLLVRK 365 VLLVR+ Sbjct: 356 VLLVRR 361 >gi|229517004|ref|ZP_04406450.1| tRNA (uracil-5-)-methyltransferase [Vibrio cholerae RC9] gi|229346067|gb|EEO11039.1| tRNA (uracil-5-)-methyltransferase [Vibrio cholerae RC9] Length = 372 Score = 383 bits (983), Expect = e-104, Method: Composition-based stats. Identities = 182/333 (54%), Positives = 246/333 (73%), Gaps = 2/333 (0%) Query: 7 IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66 + Y+ QLA+K+ RL+ M + + +P L++F S +YRMRAEF IWH+GDD+Y+IMF+Q+ Sbjct: 8 PELYQAQLADKIARLKAMFVDYSMPELEVFESPVANYRMRAEFRIWHEGDDMYYIMFNQE 67 Query: 67 TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL 126 T+E+ R+D F S LIN LM +M ++ P+LR KLFQ+D+L++ S + +V+L+YHR Sbjct: 68 TREKYRVDQFPAASRLINDLMPLLMDAMKGSPILRHKLFQVDFLSTLSGEILVSLLYHRQ 127 Query: 127 LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS 186 L + W A L+ L+ + + LIGRA K K+ LDRDYV E L V G+ +Y+Q+ENS Sbjct: 128 LSEEWITAAQALKQRLNDEGFNLNLIGRARKMKVVLDRDYVVENLQVNGQPYVYKQVENS 187 Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246 FTQPNA + MLEW + T+ +GDLLELYCGNGNFSL LA++F+RVLA E+AKPSVEA Sbjct: 188 FTQPNAKVAEKMLEWAVDCTQESKGDLLELYCGNGNFSLALAQNFERVLATELAKPSVEA 247 Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGL 304 A++NIAAN + NV+I+RMS++EFTQAM +REFNRLKD +D+ SYR TIFVDPPRSG+ Sbjct: 248 AQFNIAANQIGNVQIIRMSAEEFTQAMEGKREFNRLKDAGVDLQSYRCNTIFVDPPRSGM 307 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILST 337 D T MVQ Y ILYISCNP++L +L +L Sbjct: 308 DIDTCKMVQGYERILYISCNPETLQENLQVLGG 340 >gi|330969518|gb|EGH69584.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas syringae pv. aceris str. M302273PT] Length = 361 Score = 383 bits (983), Expect = e-104, Method: Composition-based stats. Identities = 167/366 (45%), Positives = 224/366 (61%), Gaps = 6/366 (1%) Query: 1 MSGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60 MS Y++QL EK RLR+++ F P Q+F S HYR+RAEF +W + Y+ Sbjct: 1 MSVPFDPASYDRQLEEKTVRLRELLAPFDAPEPQVFDSPREHYRLRAEFRLWREDQKRYY 60 Query: 61 IMFDQQTKE-RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119 MF + ++ S INALM + P L KLFQ+D+LT+ + A++ Sbjct: 61 AMFAPGDNRTPILLEGLPIASERINALMPVLRERWEASPTLNHKLFQVDFLTTLAGDAMI 120 Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179 TL YHR LD W+ A + A + + LIGR+ K+ + DYV E+L VAGRT Sbjct: 121 TLCYHRPLDAEWQAAAEQ-----LAAELDVSLIGRSKGQKLVIGHDYVTEKLDVAGRTFS 175 Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEI 239 YRQ E +FTQPN +N ML W A Q DLLELYCGNGNF+L LA +VLA EI Sbjct: 176 YRQPEGAFTQPNGTVNGKMLNWAFDALGERQDDLLELYCGNGNFTLPLATRVRKVLATEI 235 Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299 +K SV AA N+ N V+NV +VR+S++E T+A+ R F RL +D+ SY F ++FVDP Sbjct: 236 SKTSVNAALSNLDDNGVDNVTLVRLSAEELTEALNEVRPFRRLHGVDLKSYDFGSVFVDP 295 Query: 300 PRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359 PR+G+D T + + + ILYISCNP++L +++ L TH +ER ALFDQFPYT HME G Sbjct: 296 PRAGMDPDTCELTRRFERILYISCNPETLAANIAQLHDTHRVERCALFDQFPYTHHMESG 355 Query: 360 VLLVRK 365 VLLVR+ Sbjct: 356 VLLVRR 361 >gi|262370456|ref|ZP_06063782.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter johnsonii SH046] gi|262314798|gb|EEY95839.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter johnsonii SH046] Length = 360 Score = 382 bits (982), Expect = e-104, Method: Composition-based stats. Identities = 168/364 (46%), Positives = 242/364 (66%), Gaps = 10/364 (2%) Query: 6 LIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ 65 + Y+QQL K++R+ F P+L++F+S H+RMRAEF IWH DD+++ MF++ Sbjct: 1 MTSSYQQQLDAKIERITAQFAEFTPPSLEVFQSPEKHFRMRAEFRIWHTEDDMFYAMFER 60 Query: 66 Q---TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122 K+ +RID F IN LM ++A ++ LL +LF++ +L + + +V+LI Sbjct: 61 DEDNQKKVIRIDDFPIADASINQLMPVLLAELKSNDLLSKRLFEVHFLATLKGEMLVSLI 120 Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182 Y LD+ W+ A +L + L+ I+LIGR+ K+ L ++V E L V R Y+Q Sbjct: 121 YRCPLDEQWQVLAKQLSEKLN-----IKLIGRSRGQKVVLTDEFVVEELQVFERKYQYKQ 175 Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 IE+SFTQPNA + MLEW A + DLLELYCGNGNF+L L+ F+RVLA E+AK Sbjct: 176 IESSFTQPNAQVCQKMLEWACNAAQQSNKDLLELYCGNGNFTLPLSTRFNRVLATELAKS 235 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPP 300 SV AA++NI NH++N+++ R+S+++FTQA EREF RL++ ID+ SY F T+FVDPP Sbjct: 236 SVYAAQWNIEQNHIDNIQVARLSAEDFTQAYNGEREFRRLQEANIDMSSYEFDTVFVDPP 295 Query: 301 RSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360 R+G+DD T+ ++Q + I+YISCNPD+L +L LS TH I + ALFDQFPYT H+E GV Sbjct: 296 RAGIDDETLKLIQRFERIIYISCNPDTLHDNLKTLSQTHKISQFALFDQFPYTHHVESGV 355 Query: 361 LLVR 364 LL + Sbjct: 356 LLEK 359 >gi|331005274|ref|ZP_08328666.1| tRNA (Uracil54-C5-)-methyltransferase [gamma proteobacterium IMCC1989] gi|330420951|gb|EGG95225.1| tRNA (Uracil54-C5-)-methyltransferase [gamma proteobacterium IMCC1989] Length = 384 Score = 382 bits (981), Expect = e-104, Method: Composition-based stats. Identities = 168/366 (45%), Positives = 243/366 (66%), Gaps = 10/366 (2%) Query: 4 TLLIDQYEQQLAEKVDRLRQMMLAF---QVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60 ++ +QY+ QL K+ RL+Q + + P +++F S HYRMRAEF +WH+G+ ++ Sbjct: 24 SVFPEQYQAQLDTKITRLQQQLSEISSVEFPEIEVFESATEHYRMRAEFKVWHEGETSHY 83 Query: 61 IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVT 120 M D++TK+ + + F S IN LM ++A I +LR KLFQI++LT+ ++ +VT Sbjct: 84 AMSDKETKKPIFLTEFPVASQSINTLMPLLLAEINRCDVLRKKLFQIEFLTTLTEDMLVT 143 Query: 121 LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIY 180 IYH L + W E +++ ++ + +IGR+ K KI LDR YV+E L V RT Y Sbjct: 144 FIYHHPLSEKWVEKITPIKE-----QFSLNIIGRSRKQKIVLDRAYVNEELEVNKRTYSY 198 Query: 181 RQIENSFTQPNAGINVHMLEWVL--AATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVE 238 +Q E SFTQPNA + ML W + +A+ + DLLELYCGNGNF+L LA++F +V+A E Sbjct: 199 QQNEGSFTQPNAKVCEKMLSWAVKKSASAEPKKDLLELYCGNGNFTLPLAQNFRQVMATE 258 Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298 I+K SV +A+ NI N++ NV IVRMSS++F++AM + R F RLKDID+ SY F T+FVD Sbjct: 259 ISKSSVYSAQENIRRNNIENVTIVRMSSEDFSEAMDKVRPFRRLKDIDLDSYDFSTVFVD 318 Query: 299 PPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMEC 358 PPR+GLD T+ M+Q + I+Y+SCNP +L +L L TH++ LA FDQFPYT H+E Sbjct: 319 PPRAGLDQHTLQMIQKFDTIIYVSCNPTTLVENLHQLCKTHSVTDLAAFDQFPYTDHLES 378 Query: 359 GVLLVR 364 V+L R Sbjct: 379 AVILKR 384 >gi|302189046|ref|ZP_07265719.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas syringae pv. syringae 642] Length = 361 Score = 382 bits (981), Expect = e-104, Method: Composition-based stats. Identities = 166/366 (45%), Positives = 224/366 (61%), Gaps = 6/366 (1%) Query: 1 MSGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60 MS Y++QL EK RLR+++ F P Q+F S HYR+RAEF +W + Y+ Sbjct: 1 MSVPFDPASYDRQLEEKTVRLRELLAPFDAPEPQVFDSPREHYRLRAEFRLWREDQKRYY 60 Query: 61 IMFDQQTKE-RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119 MF + ++ S INALM + P L KLFQ+D+LT+ + A++ Sbjct: 61 AMFAPGDNRTPILLEGLPIASERINALMPVLRERWEASPTLNHKLFQVDFLTTLAGDAMI 120 Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179 T+ YHR LD W+ A + A + + LIGR+ K+ + DYV E+L VAGRT Sbjct: 121 TMCYHRPLDAEWQAAAEQ-----LAAELDVSLIGRSKGQKLVIGHDYVTEKLDVAGRTFS 175 Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEI 239 YRQ E +FTQPN +N ML W A Q DLLELYCGNGNF+L LA +VLA EI Sbjct: 176 YRQPEGAFTQPNGTVNGKMLNWAFDALGERQDDLLELYCGNGNFTLPLATRVRKVLATEI 235 Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299 +K SV AA N+ N V+NV +VR+S++E T+A+ R F RL +D+ SY F ++FVDP Sbjct: 236 SKTSVNAALSNLDDNGVDNVTLVRLSAEELTEALNEVRPFRRLHGVDLKSYDFGSVFVDP 295 Query: 300 PRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359 PR+G+D T + + + ILYISCNP++L +++ L TH +ER ALFDQFPYT HME G Sbjct: 296 PRAGMDPDTCELTRRFERILYISCNPETLAANIAQLHDTHRVERCALFDQFPYTHHMESG 355 Query: 360 VLLVRK 365 VLLVR+ Sbjct: 356 VLLVRR 361 >gi|289675862|ref|ZP_06496752.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas syringae pv. syringae FF5] Length = 361 Score = 382 bits (981), Expect = e-104, Method: Composition-based stats. Identities = 167/366 (45%), Positives = 224/366 (61%), Gaps = 6/366 (1%) Query: 1 MSGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60 MS Y++QL EK RLR+++ F P Q+F S HYR+RAEF +W + Y+ Sbjct: 1 MSVPFDPASYDRQLEEKTVRLRELLAPFDAPEPQVFDSPREHYRLRAEFRLWREDQKRYY 60 Query: 61 IMFDQQTKE-RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119 MF + ++ S INALM + P L KLFQ+D+LT+ + A++ Sbjct: 61 AMFAPGENRTPILLEGLPIASERINALMPVLRERWEASPTLNHKLFQVDFLTTLAGDAMI 120 Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179 TL YHR LD W+ A + A + + LIGR+ K+ + DYV E+L VAGRT Sbjct: 121 TLCYHRPLDAEWQAAAEQ-----LAAELDVSLIGRSKGQKLVIGHDYVTEKLDVAGRTFS 175 Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEI 239 YRQ E +FTQPN +N ML W A Q DLLELYCGNGNF+L LA +VLA EI Sbjct: 176 YRQPEGAFTQPNGTVNGKMLNWAFDALGERQDDLLELYCGNGNFTLPLATRVRKVLATEI 235 Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299 +K SV AA N+ N V+NV +VR+S++E T+A+ R F RL +D+ SY F ++FVDP Sbjct: 236 SKTSVNAALSNLDDNGVDNVTLVRLSAEELTEALNEVRPFRRLHGVDLKSYDFGSVFVDP 295 Query: 300 PRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359 PR+G+D T + + + ILYISCNP++L +++ L TH +ER ALFDQFPYT HME G Sbjct: 296 PRAGMDPDTCELTRRFERILYISCNPETLAANIAQLHDTHRVERCALFDQFPYTHHMESG 355 Query: 360 VLLVRK 365 VLLVR+ Sbjct: 356 VLLVRR 361 >gi|330967678|gb|EGH67938.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas syringae pv. actinidiae str. M302091] Length = 359 Score = 382 bits (980), Expect = e-104, Method: Composition-based stats. Identities = 166/364 (45%), Positives = 222/364 (60%), Gaps = 6/364 (1%) Query: 1 MSGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60 MS Y++QL +K RLR+++ F P Q+F S HYR+RAEF +W + Y+ Sbjct: 1 MSVPFDPASYDRQLEKKTVRLRELLAPFDAPEPQVFDSPREHYRLRAEFRLWREDQKRYY 60 Query: 61 IMFDQQTKE-RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119 MF + ++ S INALM + P L KLFQ+D+LT+ + A++ Sbjct: 61 AMFAPGDNRTPILLEGLPIASQRINALMQVLRERWEASPTLNHKLFQVDFLTTLAGDAMI 120 Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179 T+ YHR LDD W A L L + LIGR+ ++ + DYV E+L VAGRT Sbjct: 121 TMCYHRPLDDEWLAEAEALAKEL-----DVSLIGRSRGQRLVIGHDYVTEKLDVAGRTFS 175 Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEI 239 YRQ E +FTQPN +N ML W A Q DLLELYCGNGNF+L LA +VLA EI Sbjct: 176 YRQPEGAFTQPNGTVNGKMLNWAFDALGERQDDLLELYCGNGNFTLPLATRVRKVLATEI 235 Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299 +K SV AA N+ N V+NV +VR+S++E T+A+ R F RL+ ID+ SY F ++FVDP Sbjct: 236 SKTSVNAALSNLDDNGVDNVTLVRLSAEELTEALNEVRPFRRLQGIDLKSYDFGSVFVDP 295 Query: 300 PRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359 PR+G+D T + + + ILYISCNP++L +++ L TH +ER ALFDQFPYT HME G Sbjct: 296 PRAGMDPDTCELTRRFERILYISCNPETLAANIAQLHDTHRVERCALFDQFPYTHHMESG 355 Query: 360 VLLV 363 VLLV Sbjct: 356 VLLV 359 >gi|262376153|ref|ZP_06069383.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter lwoffii SH145] gi|262308754|gb|EEY89887.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter lwoffii SH145] Length = 360 Score = 382 bits (980), Expect = e-104, Method: Composition-based stats. Identities = 169/364 (46%), Positives = 238/364 (65%), Gaps = 10/364 (2%) Query: 6 LIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ 65 + Y+QQL K++R+ +Q P L++F+S ++RMRAEF IWH DDL++ MF++ Sbjct: 1 MTSSYQQQLDAKIERISAQFAEYQPPALEVFQSPEKYFRMRAEFRIWHTEDDLFYAMFER 60 Query: 66 Q---TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122 K+ +RID F IN LM +++ + + L +LF++ +L + S Q +V+LI Sbjct: 61 DENNNKKVIRIDEFPIADRSINDLMPQLLEAFKADANLGHRLFEVHFLATLSGQVLVSLI 120 Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182 YHR LD++W A L + L+ I+LIGR+ K L +YV E L+V R Y+Q Sbjct: 121 YHRKLDESWEPAAKALAEKLN-----IKLIGRSRGQKFVLTDEYVVEELSVFDRRYKYKQ 175 Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 IE+SFTQPNA + MLEW A + DLLELYCGNGNF+L L+ F RVLA E+AK Sbjct: 176 IESSFTQPNAQVCQKMLEWACDAAEQSDKDLLELYCGNGNFTLPLSTKFRRVLATELAKS 235 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPP 300 SV AA +NI N + N+++ R+S++EFTQA ER F RL++ IDI +Y F T+FVDPP Sbjct: 236 SVYAAEWNIEQNQIENIQVARLSAEEFTQAYNGERVFRRLQEAQIDISTYDFDTVFVDPP 295 Query: 301 RSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360 R+G+DD T+ ++Q + I+YISCNPD+L +L LS TH I + A+FDQFPYT H+E GV Sbjct: 296 RAGIDDETLKLLQRFQRIIYISCNPDTLYDNLKQLSQTHRISKFAMFDQFPYTHHVETGV 355 Query: 361 LLVR 364 LL + Sbjct: 356 LLEK 359 >gi|77461119|ref|YP_350626.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas fluorescens Pf0-1] gi|123603199|sp|Q3K6G9|TRMA_PSEPF RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|77385122|gb|ABA76635.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas fluorescens Pf0-1] Length = 359 Score = 381 bits (978), Expect = e-103, Method: Composition-based stats. Identities = 164/363 (45%), Positives = 224/363 (61%), Gaps = 6/363 (1%) Query: 4 TLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63 T Y QL +KV RLR ++ F P +F S ++R+RAEF +W +G + ++ MF Sbjct: 2 TFDSQAYAAQLEDKVTRLRDLLAPFDAPEPTVFDSPLQNFRLRAEFRLWREGGERHYAMF 61 Query: 64 DQQTKE-RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122 Q K + I+ F SL IN LM ++ A + L KLFQ+++LT+ + A++TL Sbjct: 62 SQDDKRTPILIEEFPIASLRINQLMPQLKAAWQASAALSHKLFQVEFLTTLAGDAMITLC 121 Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182 YHR LD+ W A +L L + +IGR+ + L DYV E+L V GRT YRQ Sbjct: 122 YHRPLDEHWHAAATKLATDL-----GVSIIGRSKGKREVLGLDYVVEKLDVGGRTFSYRQ 176 Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 E +FTQPN +N ML W A DLLELYCGNGNF+L LA +VLA EI+K Sbjct: 177 PEGAFTQPNGTVNQKMLNWAYEALGDRSDDLLELYCGNGNFTLPLATRVRKVLATEISKT 236 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302 SV AA N+A N V+NV +VR+S++E T+A+ R F RL ID+ SY F ++FVDPPR+ Sbjct: 237 SVNAALSNLAENAVDNVTLVRLSAEELTEALNEVRPFRRLHGIDLKSYEFGSVFVDPPRA 296 Query: 303 GLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362 G+D T + + + +ILYISCNP++L +++ L TH I R ALFDQFP+T HME GVLL Sbjct: 297 GMDPDTCELTRRFDNILYISCNPETLAANIAQLHDTHRITRCALFDQFPWTHHMESGVLL 356 Query: 363 VRK 365 R+ Sbjct: 357 TRR 359 >gi|94500651|ref|ZP_01307181.1| tRNA (uracil-5-)-methyltransferase [Oceanobacter sp. RED65] gi|94427206|gb|EAT12186.1| tRNA (uracil-5-)-methyltransferase [Oceanobacter sp. RED65] Length = 361 Score = 381 bits (978), Expect = e-103, Method: Composition-based stats. Identities = 169/361 (46%), Positives = 234/361 (64%), Gaps = 6/361 (1%) Query: 7 IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66 +Y QL EKV R+ + +F +PN+++F S P H+R RAEF +WHDGD +H MF+ Sbjct: 6 TSEYSSQLNEKVTRIHKQFSSFAIPNIEVFESVPQHFRQRAEFRVWHDGDSCFHAMFEPG 65 Query: 67 TK-ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHR 125 K + ++I +F S I LM +MM I LL+ KLFQI+YL + S +VTLIYH+ Sbjct: 66 KKNDPIKIVHFDIASEAICELMPKMMERINDSHLLKHKLFQIEYLGTSSGDMLVTLIYHK 125 Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIEN 185 + + W E A ++D L I +IGRA K ++ LD+D+V E L V G+ + Y+Q+E Sbjct: 126 PITEEWIEKASAIKDEL-----GIHIIGRARKMRVPLDQDFVIETLEVDGKPIHYKQVEA 180 Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 SFTQPNA IN ML W DLLELYCGNGNFSL LA + RV+A EI+K SV+ Sbjct: 181 SFTQPNAYINQKMLSWARKQNCDSDRDLLELYCGNGNFSLALADRYRRVVATEISKTSVK 240 Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD 305 AA A N+++NV R+S++EFT+ M+ ++ RL+D+ + S F T+ VDPPR+GLD Sbjct: 241 AALDGKAMNNIDNVDFARVSAEEFTEHMKGGKQRRRLQDMGLESADFGTVLVDPPRAGLD 300 Query: 306 DATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 + + ++ Y +I+YISCNPD+L +L LS TH IE A+FDQFPYT H+ECGV L R+ Sbjct: 301 EDSCQLISEYDNIIYISCNPDTLQDNLEQLSKTHHIESFAVFDQFPYTHHIECGVYLTRR 360 Query: 366 P 366 Sbjct: 361 N 361 >gi|255065084|ref|ZP_05316939.1| tRNA (uracil-5-)-methyltransferase [Neisseria sicca ATCC 29256] gi|255050505|gb|EET45969.1| tRNA (uracil-5-)-methyltransferase [Neisseria sicca ATCC 29256] Length = 360 Score = 381 bits (978), Expect = e-103, Method: Composition-based stats. Identities = 162/362 (44%), Positives = 238/362 (65%), Gaps = 11/362 (3%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTK- 68 Y QQL +K+ L+Q+ P +++F S HYRMRAEF IWH+G ++++ MF++ K Sbjct: 4 YTQQLDQKIQYLQQLFQGLDFPEIEVFESPEQHYRMRAEFRIWHEGGEMFYAMFERGQKA 63 Query: 69 ---ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHR 125 +R D F S INALM +++ P L+ + + +++L++ S + +VT+IYH+ Sbjct: 64 SGASLIRCDQFPAASESINALMPKLIEAAAQNPELKNRWYAVEFLSALSGEMLVTMIYHK 123 Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIEN 185 L +AW+ A L AR+ I +IGR+ KI L +DY+ E L V G+T YRQ+E Sbjct: 124 KLGEAWQRAAETL-----ARELGIHIIGRSRGQKIVLTQDYITEELNVNGKTFRYRQVEG 178 Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 SFTQPNA + ML W + + GDLLELYCGNGNF+L L++HF +VLA E++K SV Sbjct: 179 SFTQPNARVCEKMLGWACDVAQNLSGDLLELYCGNGNFTLPLSQHFRQVLATEVSKTSVY 238 Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSG 303 AA++NI AN +N+KI R+S++EFT+A + REF RL++ I + Y F IFVDPPR+G Sbjct: 239 AAQWNIEANRRDNIKIARLSAEEFTEAYTQSREFRRLQEQGISLKDYGFSAIFVDPPRAG 298 Query: 304 LDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363 +D+ T+ +V + +I+YISCN ++L +L L TH ++R ALFDQFP+T H+E GV L Sbjct: 299 VDEETLKLVSQFDNIIYISCNLETLRANLDTLCRTHAVKRAALFDQFPFTHHIESGVYLK 358 Query: 364 RK 365 +K Sbjct: 359 KK 360 >gi|152998306|ref|YP_001343141.1| tRNA (uracil-5-)-methyltransferase [Marinomonas sp. MWYL1] gi|189036041|sp|A6W3C7|TRMA_MARMS RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|150839230|gb|ABR73206.1| tRNA (uracil-5-)-methyltransferase [Marinomonas sp. MWYL1] Length = 366 Score = 381 bits (978), Expect = e-103, Method: Composition-based stats. Identities = 175/363 (48%), Positives = 244/363 (67%), Gaps = 6/363 (1%) Query: 7 IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ- 65 + YE+QL +K L ++M +P +++F S+P HYRMRAEF IWHDGDDLY+ MFD Sbjct: 8 PEMYEKQLQDKQAELAKLMATLSLPEMEVFASQPTHYRMRAEFRIWHDGDDLYYAMFDSA 67 Query: 66 QTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHR 125 + +R D F+ S LIN LM +++ +R P+LR KLFQ+D+LT+ + +A+++L+YH+ Sbjct: 68 DPRTPIRTDQFLAASRLINELMPKLLDAVRDVPVLRYKLFQVDFLTTTTGEALISLLYHK 127 Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIEN 185 +D W +L +A A IGR+ K K + RD+V E LTV G+ Y+Q+EN Sbjct: 128 PIDAEWNAAVQQLNNAFPA----CHFIGRSRKKKQIITRDFVMETLTVNGQKFHYQQVEN 183 Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 SFTQPNAGI+ MLEW L TK GDLLE+YCGNGNFS+ LAR FDRV+A EI+K SV Sbjct: 184 SFTQPNAGISEKMLEWALDVTKEASGDLLEMYCGNGNFSIPLARRFDRVVATEISKVSVN 243 Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR-LKDIDIHSYRFKTIFVDPPRSGL 304 +A+ NIA N ++NV++V+M+S++ + A+ + E + L + + VDPPR+GL Sbjct: 244 SAQLNIAINGMHNVQVVKMASEDVSAALNGDVELPKSLVQAGVSELTPSVVLVDPPRAGL 303 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 DDATV +++ ILYISCNP++L +L LS TH + R A+FDQFPYT H+E GV L R Sbjct: 304 DDATVELIRKIDSILYISCNPETLKANLEALSNTHEVVRYAMFDQFPYTHHVETGVFLRR 363 Query: 365 KPS 367 K S Sbjct: 364 KAS 366 >gi|85711838|ref|ZP_01042893.1| tRNA (uracil-5-)-methyltransferase [Idiomarina baltica OS145] gi|85694235|gb|EAQ32178.1| tRNA (uracil-5-)-methyltransferase [Idiomarina baltica OS145] Length = 368 Score = 381 bits (978), Expect = e-103, Method: Composition-based stats. Identities = 169/362 (46%), Positives = 244/362 (67%) Query: 4 TLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63 T+ +Y Q AEK L+Q++ + L++ S HYRMRAEF +WH+ +DLY+IMF Sbjct: 5 TIDPSEYPLQFAEKAKHLQQLLSPYYKGELELHESPRTHYRMRAEFRVWHEQNDLYYIMF 64 Query: 64 DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIY 123 + +T+E++R+D F+PGS LIN LM + + +P+LR KLFQ+D+LT+ +++A+++ +Y Sbjct: 65 NPETREKIRMDEFVPGSGLINTLMKAVRDYVIDKPILRNKLFQVDFLTTTTNEAVISCLY 124 Query: 124 HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQI 183 H+ LD W E A ++ + L ++ LIGRA K K + D V E L + R Q Sbjct: 125 HKQLDAEWEESAKQMHETLSPITDKLGLIGRARKQKHVIGTDEVVECLNIGNRHWKTVQT 184 Query: 184 ENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 EN+FTQPNA IN M+ W + + + DLLELYCGNGNF+L L+ F+ VLA EI+K S Sbjct: 185 ENAFTQPNAEINKQMITWAINSVGTPKHDLLELYCGNGNFTLPLSTQFEHVLATEISKRS 244 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 V +A+ N +NNV+ VRMSS+EF++A++ + E RL++ID+ SY F T+ VDPPR+G Sbjct: 245 VASAQVATEMNGINNVEFVRMSSEEFSEALKGDVEKRRLQNIDLTSYDFGTVLVDPPRAG 304 Query: 304 LDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363 LD T+ +V Y ILYISCNPD+L ++++ LS T+ + ALFDQFPYT H+E GVLL Sbjct: 305 LDALTLNVVSQYQRILYISCNPDTLIQNINDLSDKFTVTKAALFDQFPYTHHIEAGVLLE 364 Query: 364 RK 365 RK Sbjct: 365 RK 366 >gi|226942928|ref|YP_002798001.1| tRNA (uracil-5-)-methyltransferase [Azotobacter vinelandii DJ] gi|259547819|sp|C1DLS8|TRMA_AZOVD RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|226717855|gb|ACO77026.1| tRNA (uracil-5-)-methyltransferase [Azotobacter vinelandii DJ] Length = 361 Score = 380 bits (976), Expect = e-103, Method: Composition-based stats. Identities = 160/360 (44%), Positives = 220/360 (61%), Gaps = 7/360 (1%) Query: 7 IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66 Y+ QLA+K RL ++ F P ++F S HYR+RAEF +W +G+ ++ MFD Sbjct: 8 PSHYDAQLADKQARLSGLLAPFAAPEPEVFDSPREHYRLRAEFRLWREGEARHYAMFDPG 67 Query: 67 TKER-MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHR 125 K + + +D F S IN LM + A L KLFQ+++LT+ + A++TL YHR Sbjct: 68 DKRKPILLDDFPIASERINDLMPRLKAAWE-NAALGFKLFQVEFLTTLAGDALITLCYHR 126 Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIEN 185 LD W+ A RL L + ++GR+ ++ + RDYV+E L VAGR YRQ E Sbjct: 127 PLDTFWQTAAERLAAEL-----GVSIVGRSRGQRLVVGRDYVEEELEVAGRRFRYRQPEG 181 Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 +FTQPN + ML W DLLELYCGNGNF+L LA RVLA EI+K SV Sbjct: 182 AFTQPNGVVCRKMLNWAHDVLGERDDDLLELYCGNGNFTLPLATRVRRVLATEISKTSVN 241 Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD 305 AA N+ +N V+NV +VR+S++E TQA+ R F RL +D+ Y F ++FVDPPR+G+D Sbjct: 242 AALTNLESNGVDNVTLVRLSAEELTQALNEVRPFRRLAGVDLKGYDFGSLFVDPPRAGMD 301 Query: 306 DATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 T + + + ILYISCNP++L +++ L TH + R ALFDQFPYT HME GVLL R+ Sbjct: 302 PDTCELARRFGRILYISCNPETLAANIARLHDTHRVVRCALFDQFPYTHHMESGVLLERR 361 >gi|325266048|ref|ZP_08132734.1| tRNA (uracil-5-)-methyltransferase [Kingella denitrificans ATCC 33394] gi|324982686|gb|EGC18312.1| tRNA (uracil-5-)-methyltransferase [Kingella denitrificans ATCC 33394] Length = 391 Score = 380 bits (975), Expect = e-103, Method: Composition-based stats. Identities = 167/366 (45%), Positives = 231/366 (63%), Gaps = 15/366 (4%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTK- 68 Y QL K+ RL ++ F P +++F S YRMRAEF IWH+G + + MF+ +K Sbjct: 31 YNTQLNAKIQRLHTLLAPFGAPEIEVFASAEQGYRMRAEFRIWHEGGAMNYAMFEPGSKA 90 Query: 69 ---ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHR 125 +++ F P INALM ++ + + + R +L+Q ++L + S + +VTLIYH+ Sbjct: 91 SSASLIKLAQFPPAHERINALMPRLLDALSQQDVFRHRLYQCEFLCTLSGEMLVTLIYHK 150 Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIEN 185 LDD W++ A L+DAL I +IGR+ KI L DYV E LTV G+T YRQ+E Sbjct: 151 RLDDEWQKAACTLQDAL-----GISIIGRSRGQKIVLREDYVTETLTVCGQTYRYRQLEG 205 Query: 186 SFTQPNAGINVHMLEWVLA----ATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241 FTQPNA + MLEW A A DLLELYCGNGNF+L L+R F RVLA E++K Sbjct: 206 GFTQPNARVCEKMLEWACAQAEKAACTPPRDLLELYCGNGNFTLPLSRRFRRVLATEVSK 265 Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH--SYRFKTIFVDP 299 SV AA++NI AN +N+ I R+S++EFT+A R+F RL I Y F TIF+DP Sbjct: 266 TSVAAAQWNIQANGTDNIAIARLSAEEFTEAYTGARDFQRLTAQGIRLSDYDFSTIFIDP 325 Query: 300 PRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359 PR+G+D T+ +V + I+Y+SCNPD+L +L L+ THT++ ALFDQFP+T H+E G Sbjct: 326 PRAGVDSETLKLVAQFESIIYVSCNPDTLADNLQTLTQTHTVQAAALFDQFPFTPHIESG 385 Query: 360 VLLVRK 365 VLL +K Sbjct: 386 VLLAKK 391 >gi|20178175|sp|Q9RHS9|TRMA_PSEFL RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|6624218|dbj|BAA88495.1| (uracil-5-)methyltransferase [Pseudomonas fluorescens] Length = 363 Score = 380 bits (975), Expect = e-103, Method: Composition-based stats. Identities = 162/363 (44%), Positives = 226/363 (62%), Gaps = 6/363 (1%) Query: 4 TLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63 T Y QL +KV RLR ++ F P Q+F S ++R+RAEF +W +G + ++ MF Sbjct: 6 TFDAASYTAQLQDKVTRLRDLLAPFDAPEPQVFDSPLQNFRLRAEFRLWREGGERHYAMF 65 Query: 64 DQQTKE-RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122 Q K + I+ F SL IN LM ++ A + L KLFQ+++LT+ + A++TL Sbjct: 66 SQDDKRTPILIEEFPIASLRINQLMPQLKAAWQASAALSHKLFQVEFLTTLAGDAMITLC 125 Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182 YHR LD+ W A +L L+ + +IGR+ + + RDYV E+L V GRT YRQ Sbjct: 126 YHRPLDEHWHTAANKLAADLN-----VSIIGRSKGKRDVIGRDYVVEKLDVGGRTFSYRQ 180 Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 E +FTQPN +N ML W A DLLELYCGNGNF+L LA +VLA EI+K Sbjct: 181 PEGAFTQPNGTVNQKMLNWAFEALGDRSDDLLELYCGNGNFTLPLATRVRKVLATEISKT 240 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302 SV AA N+ N V+NV +VR+S++E T+A+ R F RL ID+ SY F ++FVDPPR+ Sbjct: 241 SVNAALSNLDENAVDNVTLVRLSAEELTEALNEVRPFRRLHGIDLKSYEFGSVFVDPPRA 300 Query: 303 GLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362 G+D T + + + +ILYISCNP++L +++ L TH I + A+FDQFP+T HME GVLL Sbjct: 301 GMDPDTCELTRRFENILYISCNPETLAANIAQLHDTHRITQCAMFDQFPWTHHMESGVLL 360 Query: 363 VRK 365 R+ Sbjct: 361 TRR 363 >gi|258545841|ref|ZP_05706075.1| tRNA (uracil-5-)-methyltransferase [Cardiobacterium hominis ATCC 15826] gi|258518857|gb|EEV87716.1| tRNA (uracil-5-)-methyltransferase [Cardiobacterium hominis ATCC 15826] Length = 354 Score = 379 bits (973), Expect = e-103, Method: Composition-based stats. Identities = 169/358 (47%), Positives = 231/358 (64%), Gaps = 9/358 (2%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69 Y+ QL +K RLR ++ F P +IF S P YRMRAEF +WHDGD+ + M K Sbjct: 4 YQSQLDDKTRRLRALLAPFAAPEAEIFPSPPEGYRMRAEFRVWHDGDNCHFAMTGADGK- 62 Query: 70 RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDD 129 +RID F P IN LM ++ + P LR +LFQ ++ T+Q+ + +++LIYHR LDD Sbjct: 63 PLRIDTFPPAHAAINRLMPRVITALHDRPALRHRLFQAEFQTTQAGETMLSLIYHRPLDD 122 Query: 130 AWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQ 189 AW+E A A + + LIGRA + K + +D++ E V GR YRQ ENSF+Q Sbjct: 123 AWQEAAEA-----LAAERGVHLIGRARREKRIIGQDHITETFCVGGRDYHYRQYENSFSQ 177 Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249 PNA + HML+W A G + DLLELYCGNGNF+L LA + RVLA E++K + A R Sbjct: 178 PNATVCQHMLDWATA-QAGSRADLLELYCGNGNFTLPLAARYRRVLATEVSKNGIRALRA 236 Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK--DIDIHSYRFKTIFVDPPRSGLDDA 307 N+A N + N+ + R+S++E +A+R R F RL+ ID+ +Y F T+FVDPPR+G+D A Sbjct: 237 NLAENGIENIAVARLSAEELGEALRGVRPFRRLQQDGIDLATYDFDTVFVDPPRAGIDAA 296 Query: 308 TVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 T+ ++ YP ILYISCNP++L +L LS TH I ALFDQFP+T H+E GV+LVRK Sbjct: 297 TLALIARYPRILYISCNPETLADNLHTLSQTHRIRACALFDQFPFTPHIESGVVLVRK 354 >gi|298488848|ref|ZP_07006874.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298156648|gb|EFH97742.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 361 Score = 378 bits (972), Expect = e-103, Method: Composition-based stats. Identities = 164/366 (44%), Positives = 224/366 (61%), Gaps = 6/366 (1%) Query: 1 MSGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60 MS Y++QL EK RLR+++ F P Q+F S +YR+RAEF +W + Y+ Sbjct: 1 MSVPFDPASYDRQLEEKTVRLRELLAPFDAPEPQVFDSPREYYRLRAEFRLWREDQKRYY 60 Query: 61 IMFDQQTKE-RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119 MF + ++ S INALM + P L KLFQ+D+LT+ + A++ Sbjct: 61 AMFAPGDNRTPILLEGLPIASERINALMPVLRERWEASPTLNHKLFQVDFLTTLAGDAMI 120 Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179 T+ YHR LD W+ A + A + + LIGR+ K+ + +DYV E+L VAG T Sbjct: 121 TMCYHRPLDAEWQAAAEQ-----LAAELNVSLIGRSKGQKLIIGQDYVTEKLDVAGHTFS 175 Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEI 239 YRQ E +FTQPN +N ML W A Q DLLELYCGNGNF+L LA +VLA EI Sbjct: 176 YRQPEGAFTQPNGTVNGKMLNWAFDALGERQDDLLELYCGNGNFTLPLATRVRKVLATEI 235 Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299 +K SV AA N+ N V+NV +VR+S++E T+A+ R F RL +D+ SY F ++FVDP Sbjct: 236 SKTSVNAALSNLDDNGVDNVTLVRLSAEELTEALNEVRPFRRLHGVDLKSYDFGSVFVDP 295 Query: 300 PRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359 PR+G+D T + + + ILYISCNP++L +++ L TH +ER ALFDQFPYT HME G Sbjct: 296 PRAGMDPDTCELTRRFERILYISCNPETLAANIAQLHDTHRVERCALFDQFPYTHHMESG 355 Query: 360 VLLVRK 365 VLLVR+ Sbjct: 356 VLLVRR 361 >gi|332974198|gb|EGK11131.1| tRNA (uracil-5-)-methyltransferase [Kingella kingae ATCC 23330] Length = 359 Score = 378 bits (972), Expect = e-103, Method: Composition-based stats. Identities = 166/363 (45%), Positives = 237/363 (65%), Gaps = 11/363 (3%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTK 68 Y QL EK +RL + F +L I S YRMRAEF IWH+G+++ + MF +K Sbjct: 2 PYLTQLQEKTERLHAQLAPFGASSLHIVPSAEQGYRMRAEFRIWHEGEEISYAMFQAGSK 61 Query: 69 ----ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 +++ F INALM ++ I +L+ +L+Q ++L + S + ++TLIYH Sbjct: 62 ASSASLIKLQQFPAAYSSINALMPVLLQRIAGCSVLKTRLYQCEFLATLSGEMLITLIYH 121 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + LDD W++ A L+ L + +IGR+ KI L +D+V ERL V G T YRQ+E Sbjct: 122 KKLDDEWQQAACTLQQEL-----GVWIIGRSRGQKIVLQQDFVTERLNVHGETFQYRQLE 176 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 FTQPNA + MLEW +G GDLLELYCGNGNF+L L+RHF+RVLA E++K SV Sbjct: 177 GGFTQPNAQVCEKMLEWACEQAQGAGGDLLELYCGNGNFTLPLSRHFNRVLATEVSKTSV 236 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK--DIDIHSYRFKTIFVDPPRS 302 AA++NIAAN +N++I R+S++EF+ A REF RLK I++ Y F TIF+DPPR+ Sbjct: 237 AAAQWNIAANRADNIRIARLSAEEFSAAFAGGREFTRLKQNGIELADYDFSTIFIDPPRA 296 Query: 303 GLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362 G+DD + +V + I+Y+SCNPD+LC +L+ L+ THT++ ALFDQFP+T H+E GV+L Sbjct: 297 GVDDEMLKLVAQFDRIIYVSCNPDTLCANLATLTQTHTLQSAALFDQFPFTHHIESGVIL 356 Query: 363 VRK 365 ++K Sbjct: 357 LKK 359 >gi|255319354|ref|ZP_05360571.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter radioresistens SK82] gi|262379796|ref|ZP_06072952.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter radioresistens SH164] gi|255303747|gb|EET82947.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter radioresistens SK82] gi|262299253|gb|EEY87166.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter radioresistens SH164] Length = 361 Score = 378 bits (970), Expect = e-103, Method: Composition-based stats. Identities = 167/365 (45%), Positives = 238/365 (65%), Gaps = 11/365 (3%) Query: 6 LIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ 65 + Y+ QL K+ R+ F P L++F S H+RMRAEF IWH D+++ MF++ Sbjct: 1 MTATYQAQLEAKIQRISTQFAEFNPPALEVFGSPEQHFRMRAEFRIWHTDQDMFYAMFER 60 Query: 66 ----QTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTL 121 Q K +R+D F IN LM ++A ++ +PLL +LF++D+L + S + +VTL Sbjct: 61 NPEDQQKTVIRVDEFPIADHSINQLMPILLAELKADPLLEKRLFEVDFLATLSGEMLVTL 120 Query: 122 IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYR 181 IYHR LD+ W + A L + L+ I++IGR+ K+ L D+V E L V + Y+ Sbjct: 121 IYHRKLDNEWEKAARTLAEKLN-----IKIIGRSRGQKLVLTDDFVVEELQVLEQKFKYK 175 Query: 182 QIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241 QIE FTQPNA + MLEW A + Q LLELYCGNGNF+L L+ F+RVLA E+AK Sbjct: 176 QIEGGFTQPNAIVCQKMLEWACKAAEASQKHLLELYCGNGNFTLPLSLKFERVLATELAK 235 Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK--DIDIHSYRFKTIFVDP 299 SV AA++NI N ++N+++ R+S++EFTQA EREF RL+ +IDI SY F T+FVDP Sbjct: 236 SSVYAAQWNIEQNGIDNIQVARLSAEEFTQAFNGEREFRRLQEAEIDIQSYEFDTVFVDP 295 Query: 300 PRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359 PR+G+D T+ ++Q + I+YISCNPD+L +L IL +H I + A+FDQFPYT H+E G Sbjct: 296 PRAGIDLDTLKLLQRFDRIIYISCNPDTLHDNLKILLESHKILKFAMFDQFPYTHHVETG 355 Query: 360 VLLVR 364 +LL + Sbjct: 356 ILLEK 360 >gi|66047514|ref|YP_237355.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas syringae pv. syringae B728a] gi|75500625|sp|Q4ZNF5|TRMA_PSEU2 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|63258221|gb|AAY39317.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas syringae pv. syringae B728a] Length = 361 Score = 378 bits (970), Expect = e-102, Method: Composition-based stats. Identities = 166/366 (45%), Positives = 222/366 (60%), Gaps = 6/366 (1%) Query: 1 MSGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60 MS Y++QL EK RLR+++ F P Q+F S HYR+RAEF +W + Y+ Sbjct: 1 MSVPFDPASYDRQLEEKTVRLRELLAPFDAPEPQVFDSPREHYRLRAEFRLWREDQKRYY 60 Query: 61 IMFDQQTKE-RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119 MF + ++ S INALM + P L KLFQ+D+LT+ + A++ Sbjct: 61 AMFAPGDNRTPILLEGLPIASERINALMPVLRERWEASPTLNHKLFQVDFLTTLAGDAMI 120 Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179 TL YHR LD + A A + + LIGR+ K+ + DYV E+L VAGRT Sbjct: 121 TLCYHRPLD-----AEWQAAAAQLAAELDVSLIGRSKGQKLVIGHDYVTEKLDVAGRTFS 175 Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEI 239 YRQ E +FTQPN +N ML W A Q DLLELYCGNGNF+L LA +VLA EI Sbjct: 176 YRQPEGAFTQPNGTVNGKMLNWAFDALGERQDDLLELYCGNGNFTLPLATRVRKVLATEI 235 Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299 +K SV AA N+ N V+NV +VR+S++E T+A+ R F RL +D+ SY F ++FVDP Sbjct: 236 SKTSVNAALSNLDDNGVDNVTLVRLSAEELTEALNEVRPFRRLHGVDLKSYDFGSVFVDP 295 Query: 300 PRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359 PR+G+D T + + + ILYISCNP++L +++ L TH +ER ALFDQFPYT HME G Sbjct: 296 PRAGMDPDTCELTRRFERILYISCNPETLAANIAQLHDTHRVERCALFDQFPYTHHMESG 355 Query: 360 VLLVRK 365 VLLVR+ Sbjct: 356 VLLVRR 361 >gi|229592733|ref|YP_002874852.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas fluorescens SBW25] gi|262827930|sp|C3K2F6|TRMA_PSEFS RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|229364599|emb|CAY52496.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas fluorescens SBW25] Length = 359 Score = 377 bits (969), Expect = e-102, Method: Composition-based stats. Identities = 159/363 (43%), Positives = 223/363 (61%), Gaps = 6/363 (1%) Query: 4 TLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63 T +Y QL +KV RLR ++ F P Q+F S ++R+RAEF +W +G + ++ MF Sbjct: 2 TFDAARYTAQLQDKVTRLRDLLAPFDAPEPQVFDSPLQNFRLRAEFRLWREGGERHYAMF 61 Query: 64 DQQTKE-RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122 Q K + I+ F S IN LM ++ A + L KLFQ+++LT+ + A++TL Sbjct: 62 SQDDKRTPILIEEFPIASQRINQLMPQLKAAWQASAALSHKLFQVEFLTTLAGDAMITLC 121 Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182 YHR LD+ W A +L L+ + +IGR+ + + DYV E+L V GRT YRQ Sbjct: 122 YHRPLDEHWHTAANKLATDLN-----VSIIGRSKGKRDVIGHDYVVEKLEVGGRTFSYRQ 176 Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 E +FTQPN +N ML W A DLLELYCGNGNF+L LA +VLA EI+K Sbjct: 177 PEGAFTQPNGTVNQKMLNWAYDALGDRPDDLLELYCGNGNFTLPLATRVRKVLATEISKT 236 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302 SV AA N+ N V NV +VR+S++E T+A+ R F RL ID+ Y F ++FVDPPR+ Sbjct: 237 SVNAALSNLDENAVGNVTLVRLSAEELTEALNEVRPFRRLHGIDLKRYEFSSVFVDPPRA 296 Query: 303 GLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362 G+D T + + + +ILYISCNP++L +++ L TH I + A+FDQFP+T HME GVLL Sbjct: 297 GMDPDTCELTRRFDNILYISCNPETLAANIAQLHDTHRITKCAMFDQFPWTHHMESGVLL 356 Query: 363 VRK 365 R+ Sbjct: 357 TRR 359 >gi|56475741|ref|YP_157330.1| tRNA (uracil-5-)-methyltransferase [Aromatoleum aromaticum EbN1] gi|81599034|sp|Q5P8D0|TRMA_AZOSE RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|56311784|emb|CAI06429.1| tRNA (Uracil-5-)-methyltransferase [Aromatoleum aromaticum EbN1] Length = 368 Score = 377 bits (967), Expect = e-102, Method: Composition-based stats. Identities = 178/363 (49%), Positives = 242/363 (66%), Gaps = 6/363 (1%) Query: 4 TLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63 + +Y QLA+KV + + F VP +F S P+HYR+RAEF +WHDG+ + + MF Sbjct: 5 AIDPAEYASQLADKVTQFKHAFTPFAVPEPTVFPSAPLHYRLRAEFRMWHDGERIDYAMF 64 Query: 64 D-QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122 D + K+ + I+ F + I A M + +R L+ +LFQ+++L + S + +++LI Sbjct: 65 DPAEPKQPIAIEQFDIAAEPICAAMPRLRERLRASETLKRRLFQVEFLATLSGELMISLI 124 Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182 YHR LD++W A A + +QLIGR+ K KI LDRD+V ER + GR L Y+Q Sbjct: 125 YHRPLDESWEAAARE-----LAAELNVQLIGRSRKQKIVLDRDWVLERFALDGRPLQYKQ 179 Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 IE SFTQPN G+N ML W +G+ GDLLELYCGNGNF++ LA FDRVLA E++K Sbjct: 180 IEGSFTQPNGGVNRQMLGWACEQVRGVGGDLLELYCGNGNFTVALAPLFDRVLATEVSKT 239 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302 SVEAA YN+AAN + NV +VRMSS E + A+ R REF R+KD+D+ YRF T+FVDPPRS Sbjct: 240 SVEAAHYNLAANDIGNVAMVRMSSDEISAALARTREFRRMKDVDLDRYRFSTLFVDPPRS 299 Query: 303 GLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362 GLD TV + + + ILYISCNP +L +++ L TH I A+FDQFPYTRH+ECG+LL Sbjct: 300 GLDAPTVELARGFDRILYISCNPQTLQENVAALQATHGIAGAAVFDQFPYTRHLECGLLL 359 Query: 363 VRK 365 R+ Sbjct: 360 TRR 362 >gi|312963175|ref|ZP_07777660.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas fluorescens WH6] gi|311282686|gb|EFQ61282.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas fluorescens WH6] Length = 359 Score = 376 bits (966), Expect = e-102, Method: Composition-based stats. Identities = 160/363 (44%), Positives = 223/363 (61%), Gaps = 6/363 (1%) Query: 4 TLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63 T +Y QL +KV RLR ++ F P Q+F S H+R+RAEF +W + + ++ MF Sbjct: 2 TFDAARYTAQLQDKVTRLRDLLAPFDAPEPQVFDSPLQHFRLRAEFRLWREAGERHYAMF 61 Query: 64 DQQTKE-RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122 Q K + I+ F S IN LM ++ A + L KLFQ+++LT+ + A++TL Sbjct: 62 SQDDKRTPILIEEFPIASQRINQLMPQLKAAWQASAALSHKLFQVEFLTTLAGDAMITLC 121 Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182 YHR LD+ W A +L L+ + +IGR+ + + DYV E+L V GRT YRQ Sbjct: 122 YHRPLDEHWHTAANKLAADLN-----VSIIGRSKGKRDVIGHDYVVEKLEVGGRTFSYRQ 176 Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 E +FTQPN +N ML W A DLLELYCGNGNF+L LA VLA EI+K Sbjct: 177 PEGAFTQPNGTVNQKMLNWAYEALGDRPDDLLELYCGNGNFTLPLATRVRNVLATEISKT 236 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302 SV AA N+ N V+NV +VR+S++E T+A+ R F RL ID+ SY F ++FVDPPR+ Sbjct: 237 SVNAALSNLDENAVDNVTLVRLSAEELTEALNEVRPFRRLHGIDLKSYEFGSVFVDPPRA 296 Query: 303 GLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362 G+D T + + + +ILYISCNP++L +++ L TH I + A+FDQFP+T HME GVLL Sbjct: 297 GMDPDTCELTRRFDNILYISCNPETLAANIAQLHDTHRITQCAMFDQFPWTHHMESGVLL 356 Query: 363 VRK 365 R+ Sbjct: 357 TRR 359 >gi|56461373|ref|YP_156654.1| tRNA (uracil-5-)-methyltransferase [Idiomarina loihiensis L2TR] gi|56180383|gb|AAV83105.1| tRNA (uracil-5-)-methyltransferase [Idiomarina loihiensis L2TR] Length = 342 Score = 376 bits (965), Expect = e-102, Method: Composition-based stats. Identities = 170/342 (49%), Positives = 243/342 (71%), Gaps = 1/342 (0%) Query: 24 MMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLI 83 M F + +++F S HYRMRAEF +WH+GDDLY+IMF+ +T+E++R++ F+PGSLLI Sbjct: 1 MFRPFHLNEVEVFESPASHYRMRAEFRVWHEGDDLYYIMFNPETREKIRMNEFIPGSLLI 60 Query: 84 NALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALH 143 N LM E+++ ++ +LR KLFQ+D+LT+ + +AI++L+YHR LDD W + AI+LR+AL Sbjct: 61 NELMKELISLLKPNDVLRRKLFQVDFLTTTTGEAIISLLYHRPLDDQWEQEAIQLREALT 120 Query: 144 ARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL 203 + ++++IGRA K K L ++ V E + V G++ + Q ENSFTQPNA IN M+ W Sbjct: 121 SI-AKVEVIGRARKQKRVLYKESVTEEVKVDGKSYLSLQTENSFTQPNAIINQQMISWAK 179 Query: 204 AATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVR 263 DLLELYCGNGNF+L LA +F+RVLA EI+K SV AAR N N++ NV +VR Sbjct: 180 RHAGNNSHDLLELYCGNGNFTLPLAENFNRVLATEISKSSVAAARENAELNNIKNVTVVR 239 Query: 264 MSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYISC 323 MS++EF+ A+ E E R D +IHS+ +T+ VDPPR+GLD T+ +V Y I+YISC Sbjct: 240 MSAEEFSAALSGELESKRAADAEIHSFDCQTVLVDPPRAGLDKDTLKLVSQYQRIIYISC 299 Query: 324 NPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 NP++L ++ LS++H + A+FDQFPYT H+E GV+L RK Sbjct: 300 NPETLTENIHDLSSSHKVTAAAMFDQFPYTDHIETGVVLERK 341 >gi|254448334|ref|ZP_05061795.1| tRNA (uracil-5-)-methyltransferase [gamma proteobacterium HTCC5015] gi|198261947|gb|EDY86231.1| tRNA (uracil-5-)-methyltransferase [gamma proteobacterium HTCC5015] Length = 364 Score = 376 bits (965), Expect = e-102, Method: Composition-based stats. Identities = 177/369 (47%), Positives = 241/369 (65%), Gaps = 13/369 (3%) Query: 7 IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66 ++ Y QQL K RL Q++ FQ P L+++ S P++ R+RAEF IWH+G+D + MF+ Sbjct: 1 MNDYAQQLERKRQRLSQLLAPFQAPALEVYESAPLNCRLRAEFRIWHEGEDCCYAMFEPG 60 Query: 67 ----TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122 +K +RI+ S IN LM ++ ++ + L R +L+QI++L++ S +VTLI Sbjct: 61 QKASSKSLIRIEQLPIASRAINELMPPLLDALKSKELTRKRLYQIEFLSTLSGDMLVTLI 120 Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182 YH+ LDD WR A +L++ L I +IGR+ K K L RDYV E+ TVA R Y+Q Sbjct: 121 YHKKLDDDWRTAAAQLQEQL-----GIAIIGRSRKQKCVLSRDYVLEQFTVAQRHYEYQQ 175 Query: 183 IENSFTQPNAGINVHMLEWV--LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240 +E FTQPN + ML W A T +GDLLELYCGNGNF+L L+RHF RVLA E+A Sbjct: 176 LEGGFTQPNGAMCEIMLNWASDCAKTMQARGDLLELYCGNGNFTLPLSRHFRRVLATEVA 235 Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL--KDIDIHSYRFKTIFVD 298 K SV AA +NI N +N+ ++R+SS+E TQA+ EREF RL K I++ Y F +FVD Sbjct: 236 KTSVYAAEWNIQRNACDNITVIRLSSEELTQALNGEREFRRLQQKAIELDQYDFDAVFVD 295 Query: 299 PPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMEC 358 PPRSG+D T + + HILYISCNP++L RDL++L TH IER ALFDQFP T H+E Sbjct: 296 PPRSGMDVNTCQLTARFEHILYISCNPETLARDLALLCETHRIERAALFDQFPQTDHIEA 355 Query: 359 GVLLVRKPS 367 GV L R+ + Sbjct: 356 GVWLKRQGA 364 >gi|70732678|ref|YP_262441.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas fluorescens Pf-5] gi|123652774|sp|Q4K5P2|TRMA_PSEF5 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|68346977|gb|AAY94583.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas fluorescens Pf-5] Length = 359 Score = 376 bits (965), Expect = e-102, Method: Composition-based stats. Identities = 161/363 (44%), Positives = 227/363 (62%), Gaps = 6/363 (1%) Query: 4 TLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63 T Y QL +KV RLR ++ F P Q+F S ++R+RAEF +W + + ++ MF Sbjct: 2 TFDAASYTTQLNDKVARLRDLLAPFDAPEPQVFDSPLQNFRLRAEFRLWREAGERHYAMF 61 Query: 64 DQQTKE-RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122 Q K + I+ F S IN LM + A + L KLFQ+++LT+ + A++TL Sbjct: 62 SQDDKRTPILIEEFPIASQRINQLMPRLKAAWQASAPLSHKLFQVEFLTTLAGDAMITLC 121 Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182 YHR LD+ W + A +L L ++ +IGR+ + + +DYV E+L V GRT YRQ Sbjct: 122 YHRPLDEHWHKAASQLAADL-----KVSVIGRSKGKREVIGQDYVVEKLEVGGRTFSYRQ 176 Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 E +FTQPN +N ML W A Q DLLELYCGNGNF+L LA +VLA EI+K Sbjct: 177 PEGAFTQPNGTVNQKMLNWAYEALGERQDDLLELYCGNGNFTLPLATRVRKVLATEISKT 236 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302 SV AA N++ N V+NV +VR+S++E T+A+ R F RL+ +D+ SY F ++FVDPPR+ Sbjct: 237 SVNAALSNLSENAVDNVTLVRLSAEELTEALNEVRPFRRLQGVDLKSYEFGSVFVDPPRA 296 Query: 303 GLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362 G+D T + + + +ILYISCNP++L +++ L TH I R ALFDQFP+T HME GVLL Sbjct: 297 GMDPDTCELTRRFDNILYISCNPETLAANIAQLHDTHRITRCALFDQFPWTHHMESGVLL 356 Query: 363 VRK 365 R+ Sbjct: 357 TRR 359 >gi|330811870|ref|YP_004356332.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327379978|gb|AEA71328.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 359 Score = 375 bits (964), Expect = e-102, Method: Composition-based stats. Identities = 162/363 (44%), Positives = 223/363 (61%), Gaps = 6/363 (1%) Query: 4 TLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63 T Y QL KV RLR ++ F P +F S ++R+RAEF +W + + ++ MF Sbjct: 2 TFDSQAYTAQLQGKVTRLRDLLAPFDAPEPAVFDSPLKNFRLRAEFRLWREAGERHYAMF 61 Query: 64 DQQTKE-RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122 Q K + I+ F SL IN LM ++ A + L KLFQ+++LT+ + A++TL Sbjct: 62 SQDDKRTPILIEEFPIASLRINQLMPQLKAAWQASAPLSHKLFQVEFLTTLAGDAMITLC 121 Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182 YHR LD+ W A +L L + +IGR+ + + DYV E+L V GRT YRQ Sbjct: 122 YHRPLDEHWHAAASKLATDL-----GVSIIGRSKGKREVIGHDYVVEKLEVGGRTFSYRQ 176 Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 E +FTQPN +N ML W A DLLELYCGNGNF+L LA +VLA EI+K Sbjct: 177 PEGAFTQPNGTVNQKMLNWAYDALGDRSDDLLELYCGNGNFTLPLATRVRKVLATEISKT 236 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302 SV AA N++ N V+NV +VR+S++E T+A+ R F RL ID+ SY F ++FVDPPR+ Sbjct: 237 SVNAALSNLSENAVDNVTLVRLSAEELTEALNEVRPFRRLHGIDLKSYEFGSVFVDPPRA 296 Query: 303 GLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362 G+D T + + + +ILYISCNPD+L +++ L+ TH I R ALFDQFP+T HME GVLL Sbjct: 297 GMDPDTCELTRRFDNILYISCNPDTLAANIAQLNDTHRITRCALFDQFPWTHHMESGVLL 356 Query: 363 VRK 365 R+ Sbjct: 357 TRR 359 >gi|254283016|ref|ZP_04957984.1| tRNA (uracil-5-)-methyltransferase [gamma proteobacterium NOR51-B] gi|219679219|gb|EED35568.1| tRNA (uracil-5-)-methyltransferase [gamma proteobacterium NOR51-B] Length = 366 Score = 375 bits (964), Expect = e-102, Method: Composition-based stats. Identities = 166/361 (45%), Positives = 230/361 (63%), Gaps = 8/361 (2%) Query: 7 IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66 D+Y+ L KV L LA +F S +RMRAEF +WHD DDLY++MF Sbjct: 8 PDRYQTLLDAKVKSLVPRFLALGASEPDVFTSPTTGFRMRAEFRVWHDDDDLYYVMFKPG 67 Query: 67 -TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHR 125 K +RID+F I +M ++ +R +PLLR KLFQ+++L + + + +VTL+YHR Sbjct: 68 DGKAPVRIDHFPIACDTIQQIMPRLLTAVRNKPLLRRKLFQVEFLATTTGELLVTLVYHR 127 Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIEN 185 LD W+E A LR+ L+ + LIGR+ K KI L RD+V+ERLTV R +RQ E Sbjct: 128 PLDGQWQEAAEHLRNELN-----VSLIGRSRKQKIILGRDWVEERLTVDDRVYRFRQPEQ 182 Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 +FTQPNA +N M+ W I GDLLELYCG GNF+L LA FDRV+A E++KP+ Sbjct: 183 AFTQPNARVNTAMITWAKTQCHDIDGDLLELYCGIGNFTLPLASEFDRVIATEMSKPATA 242 Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI--DIHSYRFKTIFVDPPRSG 303 AA YN N ++NV+ R+S+++ T A+R ER F RL + + YR T+ VDPPR+G Sbjct: 243 AANYNREVNGIDNVEFARLSAEDMTAALRGERLFRRLAHLHKPLSDYRLSTLLVDPPRAG 302 Query: 304 LDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363 LD AT + + +LY+SCNP++L ++L +L+ TH I++ A+FDQFPYT H+EC VLL Sbjct: 303 LDPATEALATGFDTVLYVSCNPETLLKNLDVLTATHAIKQFAVFDQFPYTHHLECAVLLK 362 Query: 364 R 364 R Sbjct: 363 R 363 >gi|294788983|ref|ZP_06754223.1| tRNA (uracil-5-)-methyltransferase [Simonsiella muelleri ATCC 29453] gi|294483085|gb|EFG30772.1| tRNA (uracil-5-)-methyltransferase [Simonsiella muelleri ATCC 29453] Length = 363 Score = 375 bits (964), Expect = e-102, Method: Composition-based stats. Identities = 173/368 (47%), Positives = 243/368 (66%), Gaps = 14/368 (3%) Query: 7 IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66 + Y +QL +K + L + + F P LQ+F S HYR RAEF IWH+GD + + MF Sbjct: 1 MTTYNEQLQQKTNYLTEKLRPFHAPKLQVFPSAEQHYRQRAEFRIWHEGDAMSYAMFQAG 60 Query: 67 TK----ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQS--DQAIVT 120 K +++D F + IN LM ++M I P+LR + +Q+++L + S + +VT Sbjct: 61 QKASSASLIKLDNFPTAAHSINDLMPKLMHAISDCPVLRERWYQVEFLATLSVDSKILVT 120 Query: 121 LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIY 180 LIYH+ LDDAW A +L++ L+ I +IGR+ KI L +D+V E+LTV GR Y Sbjct: 121 LIYHKRLDDAWEAAARQLQNDLN-----IWIIGRSRGQKIVLTQDFVTEKLTVHGREFQY 175 Query: 181 RQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEI 239 RQ+E FTQPNA I ML W AA Q DLLELYCGNGNF+L L++HF RVLA EI Sbjct: 176 RQLEGGFTQPNAQICEKMLAWACNAAGNSKQFDLLELYCGNGNFTLPLSQHFRRVLATEI 235 Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL--KDIDIHSYRFKTIFV 297 +K SV AA++NI+AN +NN++I R+S++E T+A R F RL + ID+ Y F TIF+ Sbjct: 236 SKTSVAAAQWNISANQINNIQIARLSAEELTEAFSGSRAFQRLTTQGIDLQHYDFSTIFI 295 Query: 298 DPPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHME 357 DPPR+G+DD T+ +V + HI+Y+SCNP++LC +L L+ H I+ +ALFDQFP+T H+E Sbjct: 296 DPPRAGVDDETLKLVAKFEHIIYVSCNPETLCENLQYLTQMHKIQEVALFDQFPFTHHIE 355 Query: 358 CGVLLVRK 365 GVLL++K Sbjct: 356 TGVLLIKK 363 >gi|254480467|ref|ZP_05093714.1| tRNA (uracil-5-)-methyltransferase [marine gamma proteobacterium HTCC2148] gi|214039050|gb|EEB79710.1| tRNA (uracil-5-)-methyltransferase [marine gamma proteobacterium HTCC2148] Length = 371 Score = 375 bits (962), Expect = e-102, Method: Composition-based stats. Identities = 169/363 (46%), Positives = 244/363 (67%), Gaps = 3/363 (0%) Query: 6 LIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ 65 + +QYE+ LA KV+R+ +++ + VP IFRS +RMRAEF +WH GD L ++MF + Sbjct: 7 IPEQYEELLAAKVERVSRLLDPYAVPEPSIFRSALTGFRMRAEFRMWHQGDALDYVMFRR 66 Query: 66 QT-KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 K + I F I LM ++ I+ LR KLFQ+++L++ + ++++TL+YH Sbjct: 67 DDPKTPVPIKTFPIACDSIQQLMPALLDIIKGNQELRRKLFQVEFLSTLAGESLITLVYH 126 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 R L+ +W A +L D L ++ LIGR+ K KI L +++V E L + G++ Y+Q E Sbjct: 127 RKLEPSWEAEAQKLHDDLSTLCPELSLIGRSRKQKIILGQEWVCETLDIEGQSFRYQQYE 186 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 +FTQPNA +N+ M+ W + GDLLELYCGNGNF+L LA+ FD V+A E+AK SV Sbjct: 187 QAFTQPNARVNIKMISWACEQALNLSGDLLELYCGNGNFTLPLAQRFDNVIATELAKVSV 246 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI--DIHSYRFKTIFVDPPRS 302 AAR N+ N V N +I+R++++E TQAM + REF RL+D+ +H Y +T+FVDPPR+ Sbjct: 247 RAARNNLGMNAVRNTQIIRLAAEEVTQAMNQVREFRRLQDLSKPLHEYDLRTVFVDPPRA 306 Query: 303 GLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362 GLD+ TV MV + I+YISCNP++L +L++L THT+E ALFDQFPYT HMECGVLL Sbjct: 307 GLDEQTVEMVSHFETIIYISCNPETLASNLAVLCNTHTVEMFALFDQFPYTDHMECGVLL 366 Query: 363 VRK 365 +K Sbjct: 367 KQK 369 >gi|153840002|ref|ZP_01992669.1| tRNA (uracil-5-)-methyltransferase [Vibrio parahaemolyticus AQ3810] gi|149746450|gb|EDM57461.1| tRNA (uracil-5-)-methyltransferase [Vibrio parahaemolyticus AQ3810] Length = 318 Score = 374 bits (960), Expect = e-101, Method: Composition-based stats. Identities = 181/317 (57%), Positives = 238/317 (75%), Gaps = 2/317 (0%) Query: 51 IWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYL 110 +WH+G+DLY+IMF+Q+T+E+ R+D F S LIN LM ++ ++ LR KLFQ+D+L Sbjct: 1 VWHEGEDLYYIMFNQETREKYRVDQFPAASRLINDLMPLLVEAMKDNESLRRKLFQVDFL 60 Query: 111 TSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDER 170 ++ S + +V+L+YHR LD+ W E A L+ L+ + + +IGRA K KI LDRDYV E+ Sbjct: 61 STLSGEILVSLLYHRQLDEEWIENAKALKQRLNDEGFNLNIIGRARKMKIILDRDYVIEK 120 Query: 171 LTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARH 230 L V G++ IY+Q+ENSFTQPN + MLEW + T+ GDLLELYCGNGNFSL LA++ Sbjct: 121 LDVNGQSYIYQQVENSFTQPNGKVAEKMLEWAVDCTQESTGDLLELYCGNGNFSLALAQN 180 Query: 231 FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIH 288 FDRVLA E+AKPSVE+A+YNIAAN ++NV+I+RMS++EFT+AM +REF RLKD +D+ Sbjct: 181 FDRVLATELAKPSVESAQYNIAANKIDNVQIIRMSAEEFTEAMEGKREFRRLKDNGVDLK 240 Query: 289 SYRFKTIFVDPPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFD 348 SY TIFVDPPR+G+D T MVQ Y I+YISCNP++L +L ILS TH + R ALFD Sbjct: 241 SYNCNTIFVDPPRAGMDVDTCKMVQGYERIMYISCNPETLKENLDILSETHNVTRFALFD 300 Query: 349 QFPYTRHMECGVLLVRK 365 QFPYT HME GVLL RK Sbjct: 301 QFPYTHHMEAGVLLERK 317 >gi|254785733|ref|YP_003073162.1| tRNA (uracil-5-)-methyltransferase [Teredinibacter turnerae T7901] gi|259547835|sp|C5BTY4|TRMA_TERTT RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|237686461|gb|ACR13725.1| tRNA-methyltransferase [Teredinibacter turnerae T7901] Length = 364 Score = 373 bits (959), Expect = e-101, Method: Composition-based stats. Identities = 177/366 (48%), Positives = 238/366 (65%), Gaps = 8/366 (2%) Query: 3 GTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHD---GDDLY 59 G+ + Y+ Q +EK++R R F + FRS YRMRAEF IWHD G Y Sbjct: 4 GSAPTETYDVQFSEKIERTRDQFKDFFNGEIDAFRSPASEYRMRAEFKIWHDKDTGRACY 63 Query: 60 HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119 + + + + I+ F GS I LM +++A + LL+ KLFQI++LT+ S A+V Sbjct: 64 AMHQPKVKNQVIPIEDFEIGSARIRELMPDVLAAVNNSTLLKQKLFQIEFLTATSGDAVV 123 Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179 +LIYHR L + W+ A +L+ L QLIGR+ K KI L RDYV E L V ++ Sbjct: 124 SLIYHRPLSEQWQAEAEQLQSTLRC-----QLIGRSRKQKIALGRDYVLETLLVNDKSYT 178 Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEI 239 Y+Q+E FTQPNA + ML W + I GDLLELYCGNGNF+L LA++F RVLA E+ Sbjct: 179 YQQVETGFTQPNAAVCQKMLTWAQTVSADIGGDLLELYCGNGNFTLPLAQNFSRVLATEV 238 Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299 +K SV++A YNI N N+ I R+SS+EFT+AM + R F RL++ID+ SY+F TIFVDP Sbjct: 239 SKTSVKSALYNIEQNGATNIAIARLSSEEFTEAMNKVRRFRRLENIDLDSYQFSTIFVDP 298 Query: 300 PRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359 PR+GLD TV + + +I+YISCNPD+L +L+ L+TTH + RLALFDQFPYT H ECG Sbjct: 299 PRAGLDTDTVKLASRFDNIIYISCNPDTLADNLASLATTHEVTRLALFDQFPYTEHRECG 358 Query: 360 VLLVRK 365 V+L R+ Sbjct: 359 VILRRR 364 >gi|319956633|ref|YP_004167896.1| tRNA (uracil-5-)-methyltransferase [Nitratifractor salsuginis DSM 16511] gi|319419037|gb|ADV46147.1| tRNA (uracil-5-)-methyltransferase [Nitratifractor salsuginis DSM 16511] Length = 374 Score = 372 bits (955), Expect = e-101, Method: Composition-based stats. Identities = 152/365 (41%), Positives = 221/365 (60%), Gaps = 6/365 (1%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHI 61 S TL YE+QL K +RLR ++ F ++ F S HYR RAEF IWH+G + Sbjct: 11 SCTLYKLDYEKQLERKAERLRGLLAPFYDGEIERFASPDSHYRARAEFRIWHEGGRADYA 70 Query: 62 MFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTL 121 M + + I+ + M ++ + P+L KLF +++L + + + ++T+ Sbjct: 71 MGNLSKDGNVIIEECPKVIRPVEERMEPLLEAVNASPVLSRKLFGVEFLAATTGECLITM 130 Query: 122 IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYR 181 +YHR LD++W A L + L+A +IGRA K K+ L R++V E L + + YR Sbjct: 131 LYHRPLDESWAREARALEEQLNA-----SIIGRARKQKVVLSREFVTEELEIDSKKYKYR 185 Query: 182 QIENSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHFDRVLAVEIA 240 E FTQPN +N M+ W G DLLE YCG GNF++ LA +F +VLA EI+ Sbjct: 186 HYEGGFTQPNPYVNTRMIAWARERAAEAGGGDLLEAYCGLGNFTIPLAENFSKVLATEIS 245 Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300 K S++AA+ N A N V N++ VR+SS+E T A+R+ER+FNRLK I+I Y FK + VDPP Sbjct: 246 KNSIKAAKENCALNGVENIEFVRLSSEEMTSALRKERQFNRLKGINIDEYDFKCVLVDPP 305 Query: 301 RSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360 R+GLD+AT ++ + +I+YISCNP++L RDL LS +H + A FDQFP+T H+E GV Sbjct: 306 RAGLDEATRELITTFENIIYISCNPETLARDLERLSQSHEVHAAASFDQFPHTEHLESGV 365 Query: 361 LLVRK 365 L R+ Sbjct: 366 FLQRR 370 >gi|213612916|ref|ZP_03370742.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 451 Score = 372 bits (954), Expect = e-101, Method: Composition-based stats. Identities = 198/306 (64%), Positives = 239/306 (78%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L +QYE QLAEKV RL+ MM F ++FRS HYRMRAEF +WHDGD+LYHIMFD Sbjct: 8 LPTEQYEAQLAEKVARLQSMMAPFSGLVPEVFRSPVSHYRMRAEFRLWHDGDNLYHIMFD 67 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTK R+R+D F S LIN LM M+A +R LR KLFQIDYLT+ S+QA+V+L+YH Sbjct: 68 QQTKSRIRVDTFPAASQLINTLMKAMIAGVRDNHALRHKLFQIDYLTTLSNQAVVSLLYH 127 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + LD+ WRE A LRDAL A+ + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E Sbjct: 128 KKLDEEWREAATALRDALRAQGLNVHLIGRATKTKIELDQDYIDERLPVAGKEIIYRQVE 187 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+ MLEW L TK +GDLLELYCGNGNFSL LAR+F+RVLA EIAKPSV Sbjct: 188 NSFTQPNAAMNIQMLEWALEVTKDSKGDLLELYCGNGNFSLALARNFNRVLATEIAKPSV 247 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 AA+YNIAANH++NV+I+RM+++EFTQAM REFNRL+ ID+ Y+ +TIFVDPPRSGL Sbjct: 248 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKRYQCETIFVDPPRSGL 307 Query: 305 DDATVG 310 D T Sbjct: 308 DSETRK 313 >gi|117617414|gb|ABK51296.1| BryS [Candidatus Endobugula sertula] Length = 365 Score = 370 bits (951), Expect = e-100, Method: Composition-based stats. Identities = 171/366 (46%), Positives = 248/366 (67%), Gaps = 9/366 (2%) Query: 4 TLLIDQYEQQLAEKV----DRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLY 59 + DQY+QQL KV D+L Q+ V ++ ++ S +YRMRAEF +WH G+ + Sbjct: 5 STYPDQYQQQLDNKVNIFKDQLTQLNHNMNVDHIAVYNSPHCYYRMRAEFKVWHTGNTSH 64 Query: 60 HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119 + M+D+ KE + ++ F + IN LM +MA I +LR KLFQI++LT+Q++ +V Sbjct: 65 YAMYDKNKKEPVFLEKFPVAAQSINQLMPLVMAEITQHEMLRKKLFQIEFLTTQTNDTLV 124 Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179 +LIYH+ L++ W ++D L I +IGR+ K K+ LDRD+V+E LTV G+ Sbjct: 125 SLIYHKSLNEQWVHTISPIKDKL-----GINIIGRSRKQKMILDRDFVNEELTVNGKIFY 179 Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEI 239 Y+Q E SFTQPNA + ML W + +K GDLLELYCGNGNF+L L+++F+RV+A E+ Sbjct: 180 YQQNEGSFTQPNAKVCEKMLAWAVNNSKNNHGDLLELYCGNGNFTLPLSQNFNRVIATEV 239 Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299 +K SV +A+ NI N+++NV I+RMSS++F+ A+ + R F RLK+ D+ SY F T+FVDP Sbjct: 240 SKSSVHSAQKNIQKNNIDNVSILRMSSEDFSLAIDKIRPFRRLKEYDLESYHFSTVFVDP 299 Query: 300 PRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359 PR+GLDD T+ M++ + +I+YISCNP +L +L L TH IE LA FDQFPYT H+E G Sbjct: 300 PRAGLDDGTIEMIKRFENIIYISCNPKTLINNLDSLCRTHNIEALAAFDQFPYTEHLEAG 359 Query: 360 VLLVRK 365 V+L +K Sbjct: 360 VILKKK 365 >gi|92113465|ref|YP_573393.1| tRNA (uracil-5-)-methyltransferase [Chromohalobacter salexigens DSM 3043] gi|91796555|gb|ABE58694.1| tRNA (uracil-5-)-methyltransferase [Chromohalobacter salexigens DSM 3043] Length = 391 Score = 369 bits (947), Expect = e-100, Method: Composition-based stats. Identities = 170/365 (46%), Positives = 233/365 (63%), Gaps = 11/365 (3%) Query: 7 IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF--- 63 ++YE QL K +R+ F P L++F S P HYR R EF +WH+GDDL++ MF Sbjct: 26 PERYEAQLDAKRERVTAQFARFSPPALEVFPSPPSHYRQRCEFRLWHEGDDLFYAMFEVD 85 Query: 64 --DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTL 121 D + KE +R+D + S INALM + + +LR KLFQ+++LT+ S +A+VTL Sbjct: 86 PSDPKRKEVIRLDDYPVASERINALMPALREALLASDVLRRKLFQVEFLTTLSGEALVTL 145 Query: 122 IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYR 181 IYHR LD AW + A L+ L + +IGRA K ++ LDRD+V ERL V GR +Y+ Sbjct: 146 IYHRQLDAAWEQEARALQTTL-----GVSIIGRARKQRLVLDRDHVWERLQVEGREFVYQ 200 Query: 182 QIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240 Q+ENSFTQPNA I ML W + +GDL+E YCGNGNF++ LA +F RV+A EI+ Sbjct: 201 QVENSFTQPNAAICQSMLGWARDVTRESREGDLVEFYCGNGNFTVALAENFRRVVATEIS 260 Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300 + SV +A N+ AN V N + RMS++EF+ A+ E+ R+ + + + F T VDPP Sbjct: 261 RTSVASANVNLEANAVANAVVARMSAEEFSAALAGEKTGRRVAALALDEHTFTTALVDPP 320 Query: 301 RSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360 R+GLD + ++ Y I+YISCNPD+L +L LS TH + R ALFDQFPYT H ECGV Sbjct: 321 RAGLDAHSCEQLKVYERIVYISCNPDTLEANLEQLSATHVVTRFALFDQFPYTDHCECGV 380 Query: 361 LLVRK 365 LL R+ Sbjct: 381 LLERR 385 >gi|254457842|ref|ZP_05071269.1| tRNA (uracil-5-)-methyltransferase [Campylobacterales bacterium GD 1] gi|207085235|gb|EDZ62520.1| tRNA (uracil-5-)-methyltransferase [Campylobacterales bacterium GD 1] Length = 368 Score = 369 bits (947), Expect = e-100, Method: Composition-based stats. Identities = 155/363 (42%), Positives = 232/363 (63%), Gaps = 6/363 (1%) Query: 3 GTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIM 62 + + YE QL++K++ R F N+ +F+S HYR R+EF IWH D++++ M Sbjct: 12 CRVYENGYEGQLSDKLELNRDRFTPFYTKNISVFKSPDSHYRSRSEFKIWHIEDEIHYGM 71 Query: 63 FDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122 + K + +D + I+ LM +++ +I+ + + KLF D+L+S + +V+LI Sbjct: 72 NHLEHKGVVLVDDCPQVNAFIHTLMPKLLVSIKDKGIC-FKLFGADFLSSSRGEMVVSLI 130 Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182 YHR LD W++ A + L I +IGR+ K K+ + +DY+ E L + + ++ Sbjct: 131 YHRKLDQEWQDKATEIAKEL-----GIYIIGRSRKQKLVIGQDYITESLNIDEKIYRFKY 185 Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 IENSFTQPN+ +N M+ W L + GDLLELYCG GNF++ A+ F++VLA EI+KP Sbjct: 186 IENSFTQPNSKVNEQMISWALKSLSDCGGDLLELYCGAGNFTIPFAKKFNKVLATEISKP 245 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302 S+ AA+ N+ N V N++ VRMS +EF QA+ E+EF R+ +IDI +Y TIFVDPPRS Sbjct: 246 SINAAKENMLLNDVENIEFVRMSVEEFVQALDGEKEFRRMNEIDIDAYNINTIFVDPPRS 305 Query: 303 GLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362 G+DDA+ + +ILYISCNP++L RDL ILS TH + +ALFDQFPYT H+E GV L Sbjct: 306 GMDDASCRFASRHDNILYISCNPETLVRDLKILSETHDVVDMALFDQFPYTHHVEMGVKL 365 Query: 363 VRK 365 +++ Sbjct: 366 IKR 368 >gi|134035057|sp|Q1QXW4|TRMA_CHRSD RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT Length = 373 Score = 368 bits (946), Expect = e-100, Method: Composition-based stats. Identities = 170/365 (46%), Positives = 233/365 (63%), Gaps = 11/365 (3%) Query: 7 IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF--- 63 ++YE QL K +R+ F P L++F S P HYR R EF +WH+GDDL++ MF Sbjct: 8 PERYEAQLDAKRERVTAQFARFSPPALEVFPSPPSHYRQRCEFRLWHEGDDLFYAMFEVD 67 Query: 64 --DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTL 121 D + KE +R+D + S INALM + + +LR KLFQ+++LT+ S +A+VTL Sbjct: 68 PSDPKRKEVIRLDDYPVASERINALMPALREALLASDVLRRKLFQVEFLTTLSGEALVTL 127 Query: 122 IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYR 181 IYHR LD AW + A L+ L + +IGRA K ++ LDRD+V ERL V GR +Y+ Sbjct: 128 IYHRQLDAAWEQEARALQTTL-----GVSIIGRARKQRLVLDRDHVWERLQVEGREFVYQ 182 Query: 182 QIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240 Q+ENSFTQPNA I ML W + +GDL+E YCGNGNF++ LA +F RV+A EI+ Sbjct: 183 QVENSFTQPNAAICQSMLGWARDVTRESREGDLVEFYCGNGNFTVALAENFRRVVATEIS 242 Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300 + SV +A N+ AN V N + RMS++EF+ A+ E+ R+ + + + F T VDPP Sbjct: 243 RTSVASANVNLEANAVANAVVARMSAEEFSAALAGEKTGRRVAALALDEHTFTTALVDPP 302 Query: 301 RSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360 R+GLD + ++ Y I+YISCNPD+L +L LS TH + R ALFDQFPYT H ECGV Sbjct: 303 RAGLDAHSCEQLKVYERIVYISCNPDTLEANLEQLSATHVVTRFALFDQFPYTDHCECGV 362 Query: 361 LLVRK 365 LL R+ Sbjct: 363 LLERR 367 >gi|88800040|ref|ZP_01115610.1| tRNA (uracil-5-)-methyltransferase [Reinekea sp. MED297] gi|88777166|gb|EAR08371.1| tRNA (uracil-5-)-methyltransferase [Reinekea sp. MED297] Length = 362 Score = 368 bits (945), Expect = e-100, Method: Composition-based stats. Identities = 163/360 (45%), Positives = 235/360 (65%), Gaps = 7/360 (1%) Query: 7 IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66 DQY++QLA+K DRL+ ++ A+ P L IF S HYRMRAEF WH+G+ Y+ MF + Sbjct: 7 PDQYDRQLADKTDRLKVLLDAWDHPELNIFSSTSAHYRMRAEFRFWHEGERSYYAMFRPE 66 Query: 67 TKE-RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHR 125 + + + F + L N LM ++ + +P LR +LFQ+++LT+QS A++TLIYHR Sbjct: 67 DRRTPVEVVDFPVATELCNDLMTKVRNAVHEDPELRNRLFQVEFLTTQSGDALITLIYHR 126 Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIEN 185 LD W E R ++ +IGRA K ++ LDRDYV E L++ GR + Q EN Sbjct: 127 QLDSNWEE-----RARYWQEQWGYPVIGRARKLRLVLDRDYVTETLSILGRDFHFHQYEN 181 Query: 186 SFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 SFTQPNAG+ M++W + ++G + DLLELYCGNGNFS+ LA++F RVL EI++ SV Sbjct: 182 SFTQPNAGVCEQMIQWAVEHSQGRESADLLELYCGNGNFSIPLAQNFRRVLGTEISRTSV 241 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 ++A+ NIA N V+NV I RM+S++ ++A R ++ I Y F TI VDPPR+GL Sbjct: 242 KSAQENIALNQVDNVSIARMASEDLSKAWLHNEPNRRFREFRIDDYDFDTILVDPPRAGL 301 Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 D+ TV +++ + I+YISCNP+S+ +++ L + + ALFDQFPYT HME GV+L R Sbjct: 302 DEDTVELLKKFRRIIYISCNPESMVKNIEALRGQYRMTATALFDQFPYTHHMEAGVILER 361 >gi|313109698|ref|ZP_07795639.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas aeruginosa 39016] gi|310882141|gb|EFQ40735.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas aeruginosa 39016] Length = 363 Score = 368 bits (945), Expect = e-100, Method: Composition-based stats. Identities = 168/359 (46%), Positives = 227/359 (63%), Gaps = 9/359 (2%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHD--GDDLYHIMFDQQ- 66 Y QL +K RL ++ F P ++F S HYR+RAEF +W + + Y+ MF+Q Sbjct: 11 YAAQLEDKKSRLAGLLAPFAAPAPEVFESPREHYRLRAEFRLWRETGNEKRYYAMFEQGD 70 Query: 67 TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL 126 + I+ F S IN LM + A +P L KLFQ+++LT+ + A++TL YHR Sbjct: 71 KHTPILIEDFPIASRRINELMPRLKAAW-ADPALGFKLFQVEFLTTLAGDALITLCYHRP 129 Query: 127 LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS 186 +DDAWR+ A +L L + L+GR+ +I + RDYV+E L+VAGR YRQ E + Sbjct: 130 IDDAWRQAAEKLAAEL-----GVNLVGRSRGKRIVVGRDYVEEELSVAGRRFRYRQPEGA 184 Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246 FTQPN +N ML W A DLLELYCGNGNF+L LA +VLA EI+K SV A Sbjct: 185 FTQPNGEVNQKMLGWAYEALGQRDDDLLELYCGNGNFTLPLATRVRKVLATEISKSSVNA 244 Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306 A N+A N V+NV +VR+S++E TQA+ R F RL DID+ SY F ++FVDPPR+G+D Sbjct: 245 ALANLADNAVDNVSLVRLSAEELTQALNEVRPFRRLADIDLKSYAFGSVFVDPPRAGMDP 304 Query: 307 ATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 T + + + ILYISCNP++L ++++ L TH I R ALFDQFPYT HME GVLL R+ Sbjct: 305 DTCELTRRFERILYISCNPETLAQNIAQLHDTHRISRCALFDQFPYTHHMESGVLLERR 363 >gi|121624856|gb|ABM63534.1| BryS [Candidatus Endobugula sertula] Length = 365 Score = 368 bits (945), Expect = e-100, Method: Composition-based stats. Identities = 170/366 (46%), Positives = 247/366 (67%), Gaps = 9/366 (2%) Query: 4 TLLIDQYEQQLAEKV----DRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLY 59 + DQY+QQ KV D+L+Q+ V ++ ++ S +YRMRAEF +WH G+ + Sbjct: 5 STYPDQYQQQPDNKVNIFKDQLKQLNHNMNVDHIAVYSSPNCYYRMRAEFKVWHTGNTSH 64 Query: 60 HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119 + M+D+ KE + ++ F + IN LM +MA I +LR KLFQI++LT+Q++ +V Sbjct: 65 YAMYDKNKKEPVFLEKFPVAAQSINQLMPLVMAEITQHEMLRKKLFQIEFLTTQTNDTLV 124 Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179 +LIYH+ L++ W ++D L I +IGR+ K K+ LDRD+V+E LTV G+ Sbjct: 125 SLIYHKSLNEQWVHTISPIKDKL-----GINIIGRSRKQKMILDRDFVNEELTVNGKIFY 179 Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEI 239 Y+Q E SFTQPNA + ML W + +K GDLLELYCGNGNF+L L+++F+RV+A E+ Sbjct: 180 YQQNEGSFTQPNAKVCEKMLAWAVNNSKNNHGDLLELYCGNGNFTLPLSQNFNRVIATEV 239 Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299 +K SV +A+ NI N+++NV I+RMSS++F+ A+ + R F RLK D+ SY F T+FVDP Sbjct: 240 SKSSVHSAQKNIKKNNIDNVSILRMSSEDFSLAIDKIRPFRRLKKYDLESYHFSTVFVDP 299 Query: 300 PRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359 PR+GLDD T+ M++ + +I+YISCNP +L +L L TH IE LA FDQFPYT H+E G Sbjct: 300 PRAGLDDGTIEMIKRFENIIYISCNPKTLINNLDSLCRTHNIEALAAFDQFPYTEHLEAG 359 Query: 360 VLLVRK 365 V+L +K Sbjct: 360 VILKKK 365 >gi|254244378|ref|ZP_04937700.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas aeruginosa 2192] gi|126197756|gb|EAZ61819.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas aeruginosa 2192] Length = 363 Score = 367 bits (943), Expect = 1e-99, Method: Composition-based stats. Identities = 167/359 (46%), Positives = 227/359 (63%), Gaps = 9/359 (2%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHD--GDDLYHIMFDQQ- 66 Y QL +K RL ++ F P ++F S HYR+RAEF +W + + ++ MF+Q Sbjct: 11 YAAQLEDKKSRLAGLLAPFAAPAPEVFESPREHYRLRAEFRLWRETGNEKRHYAMFEQGD 70 Query: 67 TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL 126 + I+ F S IN LM + A +P L KLFQ+++LT+ + A++TL YHR Sbjct: 71 KHTPILIENFPIASRRINELMPRLKAAW-ADPALGFKLFQVEFLTTLAGDALITLCYHRP 129 Query: 127 LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS 186 +DDAWR+ A +L L + L+GR+ +I + RDYV+E L+VAGR YRQ E + Sbjct: 130 IDDAWRQAAEKLAAEL-----GVNLVGRSRGKRIVVGRDYVEEELSVAGRRFRYRQPEGA 184 Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246 FTQPN +N ML W A DLLELYCGNGNF+L LA +VLA EI+K SV A Sbjct: 185 FTQPNGEVNQKMLGWAYEALGQRDDDLLELYCGNGNFTLPLATRVRKVLATEISKSSVNA 244 Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306 A N+A N V+NV +VR+S++E TQA+ R F RL DID+ SY F ++FVDPPR+G+D Sbjct: 245 ALANLADNAVDNVSLVRLSAEELTQALNEVRPFRRLADIDLKSYAFGSVFVDPPRAGMDP 304 Query: 307 ATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 T + + + ILYISCNP++L ++++ L TH I R ALFDQFPYT HME GVLL R+ Sbjct: 305 DTCELARRFERILYISCNPETLAQNIAQLHDTHRISRCALFDQFPYTHHMESGVLLERR 363 >gi|107103819|ref|ZP_01367737.1| hypothetical protein PaerPA_01004890 [Pseudomonas aeruginosa PACS2] gi|218893815|ref|YP_002442684.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas aeruginosa LESB58] gi|254238543|ref|ZP_04931866.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas aeruginosa C3719] gi|226705983|sp|B7V1D2|TRMA_PSEA8 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|126170474|gb|EAZ55985.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas aeruginosa C3719] gi|218774043|emb|CAW29859.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas aeruginosa LESB58] Length = 363 Score = 367 bits (943), Expect = 1e-99, Method: Composition-based stats. Identities = 167/359 (46%), Positives = 227/359 (63%), Gaps = 9/359 (2%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHD--GDDLYHIMFDQQ- 66 Y QL +K RL ++ F P ++F S HYR+RAEF +W + + ++ MF+Q Sbjct: 11 YAAQLEDKKSRLAGLLAPFAAPAPEVFESPREHYRLRAEFRLWRETGNEKRHYAMFEQGD 70 Query: 67 TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL 126 + I+ F S IN LM + A +P L KLFQ+++LT+ + A++TL YHR Sbjct: 71 KHTPILIEDFPIASRRINELMPRLKAAW-ADPALGFKLFQVEFLTTLAGDALITLCYHRP 129 Query: 127 LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS 186 +DDAWR+ A +L L + L+GR+ +I + RDYV+E L+VAGR YRQ E + Sbjct: 130 IDDAWRQAAEKLAAEL-----GVNLVGRSRGKRIVVGRDYVEEELSVAGRRFRYRQPEGA 184 Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246 FTQPN +N ML W A DLLELYCGNGNF+L LA +VLA EI+K SV A Sbjct: 185 FTQPNGEVNQKMLGWAYEALGQRDDDLLELYCGNGNFTLPLATRVRKVLATEISKSSVNA 244 Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306 A N+A N V+NV +VR+S++E TQA+ R F RL DID+ SY F ++FVDPPR+G+D Sbjct: 245 ALANLADNAVDNVSLVRLSAEELTQALNEVRPFRRLADIDLKSYAFGSVFVDPPRAGMDP 304 Query: 307 ATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 T + + + ILYISCNP++L ++++ L TH I R ALFDQFPYT HME GVLL R+ Sbjct: 305 DTCELARRFERILYISCNPETLAQNIAQLHDTHRISRCALFDQFPYTHHMESGVLLERR 363 >gi|152993415|ref|YP_001359136.1| tRNA (uracil-5-)-methyltransferase [Sulfurovum sp. NBC37-1] gi|172048743|sp|A6QBC0|TRMA_SULNB RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|151425276|dbj|BAF72779.1| tRNA (uracil-5-)-methyltransferase [Sulfurovum sp. NBC37-1] Length = 371 Score = 367 bits (942), Expect = 2e-99, Method: Composition-based stats. Identities = 151/366 (41%), Positives = 222/366 (60%), Gaps = 7/366 (1%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHI 61 S L Y QQL K R+ +++ F L++F S YR RAEF IWH+ + + Sbjct: 11 SCALYNQNYTQQLQLKEQRVSELLSPFYTGELELFDSPDSRYRARAEFRIWHESERCDYA 70 Query: 62 MFDQQTKERMRIDYFMPGSLLINALMIEMMATIRL-EPLLRAKLFQIDYLTSQSDQAIVT 120 M + + K + I+ I M +++ I + +L+ +LF +++L + +D+ +VT Sbjct: 71 MGNIEKKGAVTIEECPKVIEPIEKRMWKLLEKINASQEVLKQRLFAVEFLATTTDECLVT 130 Query: 121 LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIY 180 ++YHR LD+AW E A L L+ R ++GR+ K K+ L ++V E L + G+ Y Sbjct: 131 MLYHRKLDEAWSEEAKMLERELNCR-----VMGRSRKQKVILSDEFVTETLEIDGKEFTY 185 Query: 181 RQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNFSLVLARHFDRVLAVEI 239 Q E+ FTQPN +NV M+EW + K + GD LE YCG GNF+L L+ +FD VLA EI Sbjct: 186 VQYESGFTQPNPAVNVKMIEWAIWQAKKVGYGDFLESYCGLGNFTLPLSHYFDNVLATEI 245 Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299 +K S+ AA N N V N+ R++S+E T+A+ REF+RLK ID+ SY F T+ VDP Sbjct: 246 SKRSIHAALQNCELNAVENITFARLASEEMTEALNGVREFSRLKGIDLKSYDFSTVLVDP 305 Query: 300 PRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359 PR+GLD+ T+ ++ +I+YISCNP++L RDL L THT+ ALFDQFP+T H+E G Sbjct: 306 PRAGLDEGTIELISNIDNIIYISCNPETLARDLETLIKTHTVMEAALFDQFPHTEHVESG 365 Query: 360 VLLVRK 365 V L +K Sbjct: 366 VFLQKK 371 >gi|296391546|ref|ZP_06881021.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas aeruginosa PAb1] Length = 363 Score = 367 bits (942), Expect = 2e-99, Method: Composition-based stats. Identities = 167/359 (46%), Positives = 227/359 (63%), Gaps = 9/359 (2%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHD--GDDLYHIMFDQQ- 66 Y QL +K RL ++ F P ++F S HYR+RAEF +W + + ++ MF+Q Sbjct: 11 YAAQLEDKKSRLAGLLAPFAAPAPEVFESPREHYRLRAEFRLWRETGNEKRHYAMFEQGD 70 Query: 67 TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL 126 + I+ F S IN LM + A +P L KLFQ+++LT+ + A++TL YHR Sbjct: 71 KHTPILIEDFPIASRRINELMPRLKAAW-ADPALGFKLFQVEFLTTLAGDALITLCYHRP 129 Query: 127 LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS 186 +DDAWR+ A +L L + L+GR+ +I + RDYV+E L+VAGR YRQ E + Sbjct: 130 IDDAWRQAAEKLAAEL-----GVNLVGRSRGKRIVVGRDYVEEELSVAGRRFRYRQPEGA 184 Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246 FTQPN +N ML W A DLLELYCGNGNF+L LA +VLA EI+K SV A Sbjct: 185 FTQPNGEVNQKMLGWAYEALGQRDDDLLELYCGNGNFTLPLATRVRKVLATEISKSSVNA 244 Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306 A N+A N V+NV +VR+S++E TQA+ R F RL DID+ SY F ++FVDPPR+G+D Sbjct: 245 ALANLADNAVDNVSLVRLSAEELTQALNEVRPFRRLADIDLKSYAFGSVFVDPPRAGMDP 304 Query: 307 ATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 T + + + ILYISCNP++L ++++ L TH I R ALFDQFPYT HME GVLL R+ Sbjct: 305 DTCELTRRFERILYISCNPETLAQNIAQLHDTHRISRCALFDQFPYTHHMESGVLLERR 363 >gi|238020705|ref|ZP_04601131.1| hypothetical protein GCWU000324_00595 [Kingella oralis ATCC 51147] gi|237867685|gb|EEP68691.1| hypothetical protein GCWU000324_00595 [Kingella oralis ATCC 51147] Length = 361 Score = 367 bits (942), Expect = 2e-99, Method: Composition-based stats. Identities = 172/365 (47%), Positives = 234/365 (64%), Gaps = 11/365 (3%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTK 68 Y QLAEK RL ++ F P Q+F S YRMRAEF IWHD D + + MF K Sbjct: 2 PYTAQLAEKTQRLAALLAPFAAPAPQVFPSPESGYRMRAEFRIWHDSDQISYAMFAHGQK 61 Query: 69 ----ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 +++ +F INALM ++ + P L+ +L+Q ++L + S + +VTLIYH Sbjct: 62 ASSASLIKLTHFQAVHSSINALMPRLLHRLSGCPALQTRLYQCEFLATLSGEMLVTLIYH 121 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 R LDD W+ A L AR I +IGR+ KI L +D+V ERLTV G++ YRQ E Sbjct: 122 RKLDDDWQVAARAL-----ARDLGIHIIGRSKGQKIVLSQDFVTERLTVNGQSYAYRQYE 176 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 SFTQPNA + ML W +G GDLLELYCGNGNF+L L+RHF RVLA E++K SV Sbjct: 177 GSFTQPNAIVCQKMLAWACQQAQGAGGDLLELYCGNGNFTLPLSRHFRRVLATEVSKTSV 236 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRS 302 AA++NIA N V+N++I R+S++EFT+A R F RL + I + Y F TIF+DPPR+ Sbjct: 237 AAAQWNIAHNQVDNIQIARLSAEEFTEAFSGCRTFRRLAESGIALADYDFSTIFIDPPRA 296 Query: 303 GLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362 G+D+AT+ +V + I+Y+SCNP++L +L L+ TH I+ ALFDQFP+T H+E GV+L Sbjct: 297 GVDNATLQLVARFDRIIYVSCNPETLAANLQTLTQTHRIQAAALFDQFPFTPHIESGVML 356 Query: 363 VRKPS 367 RK + Sbjct: 357 TRKAA 361 >gi|116052866|ref|YP_793183.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas aeruginosa UCBPP-PA14] gi|122257123|sp|Q02FV3|TRMA_PSEAB RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|115588087|gb|ABJ14102.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas aeruginosa UCBPP-PA14] Length = 363 Score = 367 bits (941), Expect = 2e-99, Method: Composition-based stats. Identities = 168/359 (46%), Positives = 226/359 (62%), Gaps = 9/359 (2%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHD--GDDLYHIMFDQQ- 66 Y QL +K RL ++ F P +IF S HYR+RAEF +W + + ++ MF+Q Sbjct: 11 YAAQLEDKKSRLAGLLAPFAAPAPEIFESPREHYRLRAEFRLWRETGNEKRHYAMFEQGD 70 Query: 67 TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL 126 + I+ F S IN LM + A +P L KLFQ+++LT+ + A++TL YHR Sbjct: 71 KHTPILIEDFPIASRRINELMPRLKAAW-ADPALGFKLFQVEFLTTLAGDALITLCYHRP 129 Query: 127 LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS 186 +DDAWR+ A +L L + L+GR+ +I + RDYV+E L+VAGR YRQ E + Sbjct: 130 IDDAWRQAAEKLAAEL-----GVNLVGRSRGKRIVVGRDYVEEELSVAGRRFRYRQPEGA 184 Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246 FTQPN +N ML W A DLLELYCGNGNF+L LA +VLA EI+K SV A Sbjct: 185 FTQPNGEVNQKMLGWAYEALGQRDDDLLELYCGNGNFTLPLATRVRKVLATEISKSSVNA 244 Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306 A N+A N V+NV +VR+S++E TQA+ R F RL DID+ SY F +FVDPPR+G+D Sbjct: 245 ALANLADNAVDNVSLVRLSAEELTQALNEVRPFRRLADIDLKSYAFGNVFVDPPRAGMDP 304 Query: 307 ATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 T + + + ILYISCNP++L ++++ L TH I R ALFDQFPYT HME GVLL R+ Sbjct: 305 DTCELTRRFERILYISCNPETLAQNIAQLHDTHRISRCALFDQFPYTHHMESGVLLERR 363 >gi|90021263|ref|YP_527090.1| tRNA (uracil-5-)-methyltransferase [Saccharophagus degradans 2-40] gi|122996287|sp|Q21KA1|TRMA_SACD2 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|89950863|gb|ABD80878.1| tRNA (uracil-5-)-methyltransferase [Saccharophagus degradans 2-40] Length = 365 Score = 366 bits (940), Expect = 2e-99, Method: Composition-based stats. Identities = 164/359 (45%), Positives = 241/359 (67%), Gaps = 7/359 (1%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ-T 67 Y+QQL +K ++ F ++++ S P HYRMRAEF +W G + ++ M+ Sbjct: 12 NYQQQLDDKEKATKEQFSDFWQGDIEVHPSPPSHYRMRAEFKMWQQGAEAFYAMYQPGEY 71 Query: 68 KERMRID-YFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL 126 K+ + ++ F G+ I LM +++ + LLR +LFQ+++LT+ + +++ TLIYH+ Sbjct: 72 KKPVTLEWEFSVGAEKIVELMPKLLEIVNASELLRKRLFQVEFLTTTTGESVTTLIYHKP 131 Query: 127 LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS 186 L + W+ A L +L+ +IGR+ K KI L +DYV+E LT++G Y+QIE+ Sbjct: 132 LTEEWQAEANALASSLNTH-----IIGRSKKQKIVLTQDYVEETLTISGTPFTYKQIESG 186 Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246 FTQPNA + ML+W + AT + GDL+ELYCGNGNF+L L+++FD+VLA E++K SV+A Sbjct: 187 FTQPNAAVCQKMLQWAVDATANLGGDLVELYCGNGNFTLPLSKNFDKVLATEVSKTSVKA 246 Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306 A YNI N N+ I RMSS+EFT+A+ REF RLKDI++ SY F T+FVDPPR+GLD+ Sbjct: 247 AEYNIEKNGCKNITIARMSSEEFTEALNGVREFRRLKDIELDSYNFSTVFVDPPRAGLDE 306 Query: 307 ATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 T ++ + +I+YISCNPD+L +L+ L TH +ER ALFDQFPYT H ECGV+L +K Sbjct: 307 DTEALISRFDNIIYISCNPDTLANNLANLCKTHKVERFALFDQFPYTDHRECGVILTKK 365 >gi|319943226|ref|ZP_08017509.1| tRNA (uracil-5-)-methyltransferase [Lautropia mirabilis ATCC 51599] gi|319743768|gb|EFV96172.1| tRNA (uracil-5-)-methyltransferase [Lautropia mirabilis ATCC 51599] Length = 425 Score = 366 bits (940), Expect = 3e-99, Method: Composition-based stats. Identities = 170/380 (44%), Positives = 244/380 (64%), Gaps = 21/380 (5%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHI 61 S T + Y++QL K + L+ + +P +++F S P HYRMRAEF IWH+ D + + Sbjct: 41 SETSVAADYDRQLDAKHEALKALFAGLDIPAIEVFASAPQHYRMRAEFRIWHEDDAICYA 100 Query: 62 MFDQQTK----ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQA 117 MF K R++ F P INALM ++A +P+LR + +Q+++L + S + Sbjct: 101 MFSPGQKASSATLQRVEQFAPACEAINALMPRLLAATSADPVLRRRWYQVEFLATLSGEM 160 Query: 118 IVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVA--- 174 +VT++YHR LDDAW A +L+ L I +IGR+ K L +D+V ERL + Sbjct: 161 LVTMVYHRPLDDAWEAAARQLQATL-----GIHVIGRSRGQKRVLSQDFVTERLEIPGPA 215 Query: 175 ---GRTLIYRQIENSFTQPNAGINVHMLEWVLAATK----GIQGDLLELYCGNGNFSLVL 227 +YRQ E +FTQPNA + M+ W A + DLLELYCGNGNF+L L Sbjct: 216 GTPAAPFLYRQPEGAFTQPNARMCERMIGWACEAVQQAGISPASDLLELYCGNGNFTLPL 275 Query: 228 ARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL--KDI 285 +RHF +VLA E++K SV+AA++NI AN NV+I R+S++E+TQAM+ ER F RL ++I Sbjct: 276 SRHFRQVLATEVSKTSVQAAQWNIQANARPNVRIARLSAEEYTQAMQGERSFRRLREQEI 335 Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLA 345 + + F T+ VDPPR+G+DDAT+ ++Q +P+I+YISCNP +LC +L L THTIER+A Sbjct: 336 SLAEHDFSTVLVDPPRAGVDDATLALLQRFPNIVYISCNPHTLCANLDTLCQTHTIERMA 395 Query: 346 LFDQFPYTRHMECGVLLVRK 365 LFDQFP+T H ECGVLL ++ Sbjct: 396 LFDQFPFTPHTECGVLLRQR 415 >gi|15599914|ref|NP_253408.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas aeruginosa PAO1] gi|20178166|sp|Q9HV78|TRMA_PSEAE RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|9950979|gb|AAG08106.1|AE004885_11 tRNA (uracil-5-)-methyltransferase [Pseudomonas aeruginosa PAO1] Length = 363 Score = 365 bits (938), Expect = 4e-99, Method: Composition-based stats. Identities = 166/359 (46%), Positives = 227/359 (63%), Gaps = 9/359 (2%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHD--GDDLYHIMFDQQ- 66 Y QL +K RL ++ F P ++F S HYR+RAEF +W + + ++ MF+Q Sbjct: 11 YAAQLEDKKSRLAGLLAPFAAPAPEVFESPREHYRLRAEFRLWRETGNEKRHYAMFEQGD 70 Query: 67 TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL 126 + ++ F S IN LM + A +P L KLFQ+++LT+ + A++TL YHR Sbjct: 71 KHTPILLEDFPIASRRINELMPRLKAAW-ADPALGFKLFQVEFLTTLAGDALITLCYHRP 129 Query: 127 LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS 186 +DDAWR+ A +L L + L+GR+ +I + RDYV+E L+VAGR YRQ E + Sbjct: 130 IDDAWRQAAEKLAAEL-----GVNLVGRSRGKRIVVGRDYVEEELSVAGRRFRYRQPEGA 184 Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246 FTQPN +N ML W A DLLELYCGNGNF+L LA +VLA EI+K SV A Sbjct: 185 FTQPNGEVNQKMLGWAYEALGQRDDDLLELYCGNGNFTLPLATRVRKVLATEISKSSVNA 244 Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306 A N+A N V+NV +VR+S++E TQA+ R F RL DID+ SY F ++FVDPPR+G+D Sbjct: 245 ALANLADNAVDNVSLVRLSAEELTQALNEVRPFRRLADIDLKSYAFGSVFVDPPRAGMDP 304 Query: 307 ATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 T + + + ILYISCNP++L ++++ L TH I R ALFDQFPYT HME GVLL R+ Sbjct: 305 DTCELARRFERILYISCNPETLAQNIAQLHDTHRISRCALFDQFPYTHHMESGVLLERR 363 >gi|78484518|ref|YP_390443.1| tRNA (uracil-5-)-methyltransferase [Thiomicrospira crunogena XCL-2] gi|123755299|sp|Q31JA4|TRMA_THICR RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|78362804|gb|ABB40769.1| tRNA (uracil-5-)-methyltransferase [Thiomicrospira crunogena XCL-2] Length = 374 Score = 365 bits (938), Expect = 5e-99, Method: Composition-based stats. Identities = 183/376 (48%), Positives = 240/376 (63%), Gaps = 13/376 (3%) Query: 1 MSGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60 M + Y +Q AEK RL Q++ +PN F SEP HYR RAEF +WH+GD + Sbjct: 1 MLCQTYPETYAEQFAEKTHRLEQLLG--DLPNFDAFASEPEHYRARAEFRVWHEGDQTDY 58 Query: 61 IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVT 120 IMFDQQ+KE++ I + I LM ++MA I P+LR KLFQ+D+L + S + +VT Sbjct: 59 IMFDQQSKEKVAIHHCPMALESIATLMPKLMAHIVQTPVLRQKLFQVDFLATLSGEMLVT 118 Query: 121 LIYHRLLDD------AWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVA 174 LIY + L + +AL +IGRA K KICLD+DYV E+L V Sbjct: 119 LIYRKSLQTKTETGVENDVAWVDAANALRCELPITHIIGRARKQKICLDKDYVIEKLQVD 178 Query: 175 GRTLIYRQIENSFTQPNAGINVHMLEWV----LAATKGIQGDLLELYCGNGNFSLVLARH 230 +T IY+QIENSFTQPNA + +ML W A Q DL+ELYCGNG+FS+ L+ Sbjct: 179 HQTFIYQQIENSFTQPNAEMAQNMLHWARKVAAKANPDQQNDLIELYCGNGHFSIALSDQ 238 Query: 231 FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY 290 F RVLA EI+K SV +A++NI AN V+NV +V+M+++E + A++ E F RLKDID+ +Y Sbjct: 239 FHRVLATEISKTSVASAQFNIEANKVDNVTVVKMAAEEISAALQGE-TFFRLKDIDLSAY 297 Query: 291 RFKTIFVDPPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQF 350 F TIFVDPPRSGLDD T MV + +I+YISCNP++L DL + TH + ALFDQF Sbjct: 298 AFNTIFVDPPRSGLDDLTRQMVTEFDYIIYISCNPETLAHDLEAIRQTHEVLETALFDQF 357 Query: 351 PYTRHMECGVLLVRKP 366 PYT H+E GV L RKP Sbjct: 358 PYTHHIESGVFLKRKP 373 >gi|307721190|ref|YP_003892330.1| tRNA (uracil-5-)-methyltransferase [Sulfurimonas autotrophica DSM 16294] gi|306979283|gb|ADN09318.1| tRNA (uracil-5-)-methyltransferase [Sulfurimonas autotrophica DSM 16294] Length = 370 Score = 365 bits (936), Expect = 8e-99, Method: Composition-based stats. Identities = 154/363 (42%), Positives = 223/363 (61%), Gaps = 6/363 (1%) Query: 3 GTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIM 62 + + YE QL EK+ ++ + ++ +++S HYR R+EF IWH DD+ + M Sbjct: 12 CRVYENGYEAQLNEKLQINKERFAPYFSGDISVYKSLDEHYRARSEFKIWHIDDDISYAM 71 Query: 63 FDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122 K + ID + I ALM ++++ I++ + KLF D+L+S S + +V+L+ Sbjct: 72 NHIDKKGVVLIDECPQVNEYIAALMPQLLSAIKVNDI-DFKLFGADFLSSSSGEIVVSLL 130 Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182 YHR LD W+E A ++ L+ I +IGR+ K K+ + +DY+ E L V ++ Sbjct: 131 YHRALDVVWQEKAKKIAQDLN-----IYIIGRSRKQKVIIGQDYITETLHVNNDVYKFKY 185 Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 IENSFTQPN +N M+ W A Q DLLELYCG GNF++ A+ F++VLA EI+K Sbjct: 186 IENSFTQPNPRVNEQMIAWAAAKFSDTQDDLLELYCGAGNFTIPFAKKFNKVLATEISKS 245 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302 S+ AA+ N+ N V+N++ VRMS +EF A+ REF R+KDIDI +Y +IFVDPPRS Sbjct: 246 SINAAKANMHLNDVHNIEFVRMSVEEFVDALEGVREFRRMKDIDIKNYTINSIFVDPPRS 305 Query: 303 GLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362 G+ + + Y HI+YISCNP +L DL IL TH I +ALFDQFPYT H+E GV L Sbjct: 306 GMGEYSCKFASRYNHIVYISCNPQTLLDDLDILCKTHDITDMALFDQFPYTHHVEMGVKL 365 Query: 363 VRK 365 ++K Sbjct: 366 IKK 368 >gi|225024625|ref|ZP_03713817.1| hypothetical protein EIKCOROL_01502 [Eikenella corrodens ATCC 23834] gi|224942588|gb|EEG23797.1| hypothetical protein EIKCOROL_01502 [Eikenella corrodens ATCC 23834] Length = 364 Score = 364 bits (935), Expect = 1e-98, Method: Composition-based stats. Identities = 170/368 (46%), Positives = 241/368 (65%), Gaps = 11/368 (2%) Query: 4 TLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63 T +Y QL +K L+Q F Q+F S HYRMRAEF +WHDGD++ + MF Sbjct: 2 TQPSPEYTAQLQQKAGYLKQRFAEFSPSEWQVFASPEKHYRMRAEFRVWHDGDNISYAMF 61 Query: 64 DQQTK----ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119 + K RID S INA+M ++A ++ +PLLR + +Q ++L++ S +V Sbjct: 62 EPGQKAGSASLRRIDSLPAASAAINAVMPRLLAAVQADPLLRERWYQCEFLSTLSGDMLV 121 Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179 +IYH+ L W+ A RL+ L I +IGR+ K+ L +D+V ERL GR + Sbjct: 122 GMIYHKRLCGQWQAAAARLQREL-----GIMIIGRSRGQKLVLAQDFVTERLHADGRDWL 176 Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEI 239 YRQ E F+QPNA + ML+W A G+ GDLLELYCGNGNF+L LAR+F RVLA E+ Sbjct: 177 YRQYEGGFSQPNALVCQKMLDWACGAAAGLGGDLLELYCGNGNFTLPLARYFRRVLATEL 236 Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFV 297 +K SV+AA++NI AN V N+++ R+S++EFTQA R F RL++ I++ Y F T+FV Sbjct: 237 SKTSVQAAQWNIEANGVANIRLARLSAEEFTQAYHGVRTFRRLQEQGIELADYAFSTVFV 296 Query: 298 DPPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHME 357 DPPR+G+DDAT+ ++Q + +I+Y+SCNP++L +L+ L+ TH IER ALFDQFP+T H+E Sbjct: 297 DPPRAGIDDATLRLLQNFDNIIYVSCNPETLHANLTTLTQTHRIERAALFDQFPFTPHIE 356 Query: 358 CGVLLVRK 365 GVLL R+ Sbjct: 357 SGVLLRRR 364 >gi|217970373|ref|YP_002355607.1| tRNA (uracil-5-)-methyltransferase [Thauera sp. MZ1T] gi|217507700|gb|ACK54711.1| tRNA (uracil-5-)-methyltransferase [Thauera sp. MZ1T] Length = 368 Score = 364 bits (934), Expect = 2e-98, Method: Composition-based stats. Identities = 170/369 (46%), Positives = 234/369 (63%), Gaps = 12/369 (3%) Query: 4 TLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63 + +YE QLA K+ R R F +P +FRS P+HYR+RAEF +WH D + + MF Sbjct: 5 CIDPARYEDQLAAKLARYRSDFAEFDLPEPAVFRSAPLHYRLRAEFRLWHHEDRIDYAMF 64 Query: 64 DQ-QTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122 D K+ + ++ F + I LM + ++ LR K+FQ+D+L + S + +V+L+ Sbjct: 65 DSADPKQPILLETFPAAAEPIAKLMPRLRDALQASEALRRKIFQVDFLATLSGECLVSLV 124 Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182 YHR LD W A A IQ+IGR+ K KI L+RD+V E L V G+ L Y+Q Sbjct: 125 YHRPLDADWETAARA-----LAAALDIQVIGRSRKQKIVLERDWVQEVLEVDGQRLRYQQ 179 Query: 183 IENSFTQPNAGINVHMLEWVLA------ATKGIQGDLLELYCGNGNFSLVLARHFDRVLA 236 E SFTQPN G+N HML W A A GDLLELYCGNGNF++ LA F RVLA Sbjct: 180 FEGSFTQPNGGVNQHMLAWARAQAKAVGARPQGPGDLLELYCGNGNFTVALAPLFGRVLA 239 Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296 E++K SV AA N+A N V NV +VRM+S+E + A+ RE+ R++ +D+ YRF T+F Sbjct: 240 TEMSKTSVRAAHTNLADNGVANVTMVRMASEEISDALAGGREYRRMQGVDLAGYRFSTLF 299 Query: 297 VDPPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHM 356 VDPPR+GLD+ T+ + + + HILYISCNP++L +++ L+TTH I A FDQFPYT H+ Sbjct: 300 VDPPRAGLDEGTIALAKGFEHILYISCNPETLRANVAALATTHRIAAAAAFDQFPYTHHL 359 Query: 357 ECGVLLVRK 365 ECG+LL R+ Sbjct: 360 ECGLLLQRR 368 >gi|152990451|ref|YP_001356173.1| tRNA (uracil-5-)-methyltransferase [Nitratiruptor sp. SB155-2] gi|262827911|sp|A6Q2V7|TRMA_NITSB RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|151422312|dbj|BAF69816.1| tRNA (uracil-5-)-methyltransferase [Nitratiruptor sp. SB155-2] Length = 360 Score = 363 bits (932), Expect = 3e-98, Method: Composition-based stats. Identities = 158/363 (43%), Positives = 235/363 (64%), Gaps = 13/363 (3%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHI 61 S +L YE+QL +KV ++ +IF S+ YR RAEF + DG+ + Sbjct: 11 SCSLYEGGYEEQLQKKVHEFEKLFG----LEPEIFPSKQSRYRARAEFR-YIDGE---YA 62 Query: 62 MFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTL 121 M K + ID I LM ++ I +L +L+++D+L+ S +++VT+ Sbjct: 63 MHRLHEKGLVTIDACEMVLESIYELMSKLRLLINKHEILSNRLYRVDFLSGLSGESLVTM 122 Query: 122 IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYR 181 +YHR +D+AW + A + ALH I ++GR+ KI + ++Y+ E+L V + ++R Sbjct: 123 VYHRPIDEAWEKAANEIAKALH-----IDIVGRSRGKKIVIGKEYITEKLPVFEKEFLFR 177 Query: 182 QIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241 E SFTQPN +N+ M+EW K +QGDLLELYCG GNF+L L+R+F++VLA E+ K Sbjct: 178 HYEGSFTQPNPYVNIKMIEWAGRIAKDLQGDLLELYCGAGNFTLPLSRYFEKVLATEVNK 237 Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301 S++AA+ N+A N + NV+ VR+SS+E TQA+R R+F RL++ID+HSY F+T+FVDPPR Sbjct: 238 SSIKAAKENVALNGIENVEFVRLSSQEVTQALRGVRDFRRLENIDLHSYNFQTVFVDPPR 297 Query: 302 SGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVL 361 GLDD T +V+ + +I+YISCNP +L RDL LS THT++++A+FDQFPYT H+E GV Sbjct: 298 CGLDDDTRELVREFDNIVYISCNPQTLHRDLEELSKTHTVQKVAVFDQFPYTPHLESGVY 357 Query: 362 LVR 364 L R Sbjct: 358 LTR 360 >gi|146329832|ref|YP_001210047.1| tRNA (uracil-5-)-methyltransferase [Dichelobacter nodosus VCS1703A] gi|262827669|sp|A5EXH9|TRMA_DICNV RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|146233302|gb|ABQ14280.1| tRNA (uracil-5)-methyltransferase [Dichelobacter nodosus VCS1703A] Length = 361 Score = 362 bits (930), Expect = 4e-98, Method: Composition-based stats. Identities = 163/366 (44%), Positives = 233/366 (63%), Gaps = 10/366 (2%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 + + Y++QL K +L ++ F P ++I+ S HYRMRAEF IW D + L++ M Sbjct: 1 MTMSNYQRQLFAKHQQLHALLRPFSAPKIRIYPSPEKHYRMRAEFRIWRDDEQLFYAMSR 60 Query: 65 QQT---KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTL 121 + +R+ F P + I+ M ++ +R +P+L KL+++ +L S + +V+L Sbjct: 61 GGALTAQNIVRLHNFPPAYITIDRCMPLLLDALRADPVLHHKLYEVHFLASLRGELLVSL 120 Query: 122 IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYR 181 IYHR L D W A L A+++ I LIGR+ K KI L+RD++ E L V GR Y Sbjct: 121 IYHRALTDEWTAAAKAL-----AKRFHILLIGRSRKQKITLERDFILETLNVDGRAFHYH 175 Query: 182 QIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241 Q E SF+QPNA + ML W A GDLLELYCGNGNF+L LA HF RVLA EI+K Sbjct: 176 QYEQSFSQPNAYVCQKMLRWACAQAGENAGDLLELYCGNGNFTLPLASHFRRVLATEISK 235 Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK--DIDIHSYRFKTIFVDP 299 S+ A + NI N NN+ + R+S++EFTQA ++ER+F RLK I++ Y+F+T+FVDP Sbjct: 236 SSITALQENIFLNQTNNIAVARLSAEEFTQAWQKERDFYRLKQAGIELADYQFETVFVDP 295 Query: 300 PRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359 PR+G+DD T+ ++Q +P I+YISCNP +L +L L+ TH + ALFDQFP T H+ECG Sbjct: 296 PRAGIDDNTLFLLQKFPKIIYISCNPHTLAANLQTLTQTHELCAAALFDQFPDTPHIECG 355 Query: 360 VLLVRK 365 V+L +K Sbjct: 356 VVLRKK 361 >gi|119503351|ref|ZP_01625435.1| tRNA (uracil-5-)-methyltransferase [marine gamma proteobacterium HTCC2080] gi|119460997|gb|EAW42088.1| tRNA (uracil-5-)-methyltransferase [marine gamma proteobacterium HTCC2080] Length = 366 Score = 362 bits (928), Expect = 7e-98, Method: Composition-based stats. Identities = 161/362 (44%), Positives = 223/362 (61%), Gaps = 8/362 (2%) Query: 7 IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66 D YEQ LA K+ L P + +S P+ +R+RAEF IWHDGDDL++ MF Sbjct: 8 PDNYEQLLALKIAPLIDAFTELGAPAPVVVKSPPLAFRLRAEFRIWHDGDDLFYAMFRPG 67 Query: 67 T-KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHR 125 + K+ + ++ F S I LM E++ +R LR +LFQI++L++ + +VTLIYHR Sbjct: 68 SPKDPVAVERFPIASQAIQQLMPELLQGLRNNTQLRQRLFQIEFLSTLTGDMLVTLIYHR 127 Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIEN 185 LDD+W A L L I+LIGR+ K K L+ D V E L + + ++Q + Sbjct: 128 ALDDSWEIEAKELAQHL-----GIKLIGRSRKQKKVLELDSVQETLCINDKQYHFKQPDQ 182 Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 +FTQPN +N M+EW A K + DLLELYCG GNFSL LA F+RVLA E++K ++ Sbjct: 183 AFTQPNGHVNQRMIEWADRACKDLSADLLELYCGIGNFSLPLAHRFNRVLATEVSKAAIA 242 Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSG 303 AA N N +NNV+ +R+S++E T+AM R F RL + + Y+ T+ VDPPR+G Sbjct: 243 AAIENRKRNAINNVEFIRLSAQEMTEAMSGARPFRRLAHLPVPLTEYQLDTLLVDPPRAG 302 Query: 304 LDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363 LDDAT+ + + +ILYISCNP +L +L L TH I +LA FDQFPYT H+E GVLL Sbjct: 303 LDDATLALASGFRNILYISCNPHTLLENLKALEPTHQITQLAFFDQFPYTHHLESGVLLT 362 Query: 364 RK 365 R+ Sbjct: 363 RR 364 >gi|90415962|ref|ZP_01223895.1| tRNA (uracil-5-)-methyltransferase [marine gamma proteobacterium HTCC2207] gi|90332336|gb|EAS47533.1| tRNA (uracil-5-)-methyltransferase [marine gamma proteobacterium HTCC2207] Length = 367 Score = 360 bits (923), Expect = 3e-97, Method: Composition-based stats. Identities = 173/360 (48%), Positives = 228/360 (63%), Gaps = 9/360 (2%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69 Y L K++R + P +++F S +RMRAEF IWH+ ++ M K Sbjct: 11 YPAALNNKLERFYGTLDGLSFPEVEVFDSAASGFRMRAEFRIWHEDGVAHYAMNRPGEKR 70 Query: 70 RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDD 129 I F LI LM ++A+I L KLF +++LT+ S +A++TLIYHR +D+ Sbjct: 71 PYVISEFPIAGQLIGELMTPLLASINASTTLSRKLFSLEFLTTLSGEALITLIYHRPVDE 130 Query: 130 AWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQ 189 W+ A L ++ I +IGR+ K K L RDYV E LTV G Y+QIE+ FTQ Sbjct: 131 QWQLAAKAL-----EAEHSIMVIGRSRKQKTVLTRDYVTECLTVDGVQYHYQQIESGFTQ 185 Query: 190 PNAGINVHMLEWVLAATKGIQ----GDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 PNA +N ML W K I GDL+ELYCGNGNF+ VLA+HF VLA EI+K SV Sbjct: 186 PNAKVNEKMLSWASGCCKSIDDVASGDLVELYCGNGNFTAVLAQHFKSVLATEISKISVR 245 Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD 305 +A+ N A N VNNV +VRMSS+EFTQA+ ER F RLKDID++SY F TIFVDPPR+GLD Sbjct: 246 SAQTNFALNDVNNVTVVRMSSEEFTQALNGERPFRRLKDIDLNSYGFSTIFVDPPRAGLD 305 Query: 306 DATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 + T+ + Q + +ILYISCNP++L +L L+ TH I R A+FDQFP+T H+E GVLL R+ Sbjct: 306 EGTLQLAQRFDNILYISCNPETLRANLDSLTETHDIVRSAIFDQFPWTHHLESGVLLKRR 365 >gi|71907452|ref|YP_285039.1| tRNA (uracil-5-)-methyltransferase [Dechloromonas aromatica RCB] gi|123627504|sp|Q47F12|TRMA_DECAR RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|71847073|gb|AAZ46569.1| tRNA (uracil-5-)-methyltransferase [Dechloromonas aromatica RCB] Length = 362 Score = 358 bits (920), Expect = 6e-97, Method: Composition-based stats. Identities = 178/363 (49%), Positives = 231/363 (63%), Gaps = 6/363 (1%) Query: 4 TLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63 T Y QLA KV Q F V N I S P+HYRMRAEF IWH+GDDL + MF Sbjct: 5 TYDPADYPTQLATKVAHFEQNFAPFGVANTAIHASAPLHYRMRAEFRIWHEGDDLNYAMF 64 Query: 64 D-QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122 D K+ + ++ F P + I LM + +R LR +LFQ D+L + S + +VTLI Sbjct: 65 DPADPKQPITLETFPPAAESICHLMPRLRDKLRGNESLRRRLFQADFLATLSGEMLVTLI 124 Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182 YHR LD+AW A + L I LIGR+ KI LDRD+V E + GR L Y+Q Sbjct: 125 YHRQLDEAWEAAAREMAAEL-----GIGLIGRSRGQKIVLDRDWVLEGFELNGRQLRYKQ 179 Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 +E SFTQPN G+N ML W G G+L+ELYCGNGNF++ L+ F+RVLA E++K Sbjct: 180 VEGSFTQPNGGVNRQMLGWACQQAAGFGGNLVELYCGNGNFTIALSPLFERVLATEVSKS 239 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302 SV AA+YN+AAN V NV +VRMSS+EF+ A+ EF RLKDID+ +R T+FVDPPRS Sbjct: 240 SVHAAQYNLAANQVENVALVRMSSEEFSNALAGREEFQRLKDIDLEPFRHATLFVDPPRS 299 Query: 303 GLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362 GLD T+ + + + ILYISCN ++L ++ L TH I+ A+FDQFPYT H+ECG+LL Sbjct: 300 GLDAVTLELARGFDRILYISCNQETLRENVIALQDTHEIKASAVFDQFPYTHHLECGLLL 359 Query: 363 VRK 365 R+ Sbjct: 360 TRR 362 >gi|291333829|gb|ADD93512.1| tRNA uracil 5 methyltransferase [uncultured marine bacterium MedDCM-OCT-S04-C13] Length = 365 Score = 358 bits (920), Expect = 6e-97, Method: Composition-based stats. Identities = 165/363 (45%), Positives = 226/363 (62%), Gaps = 8/363 (2%) Query: 5 LLIDQYEQQLAEKVDRLRQMML--AFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIM 62 +DQY+ QL +K+ Q+M + + ++ S +RMRAEF +WH+ + + M Sbjct: 6 QDLDQYQSQLDKKLVNFYQIMAEAGVSIDSATVYPSPSSGFRMRAEFRLWHEHGRVNYAM 65 Query: 63 FDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122 K I F G+ LIN LM ++A + L K F ++LT+ S +A++TLI Sbjct: 66 NRPGEKRPYIIQDFPIGAPLINQLMPPLLAALNGNETLSRKCFSAEFLTTSSGEALITLI 125 Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182 YHR LD+ W A L+ L+ +IGR+ K K+ LD+DYV E L V R Y+Q Sbjct: 126 YHRPLDEQWEVEARALQSELNT-----AIIGRSRKQKLVLDQDYVTEVLQVGDRQYSYQQ 180 Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHFDRVLAVEIAK 241 +E+ FTQPNA IN ML W G DLLELYCGNGNF+ LARHF+ VLA EI+K Sbjct: 181 VESGFTQPNATINSQMLNWASNCLAGSNKRDLLELYCGNGNFTAPLARHFNAVLATEISK 240 Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301 SV +A N AAN ++N+++VR+S++E TQA+ ++R F RL IDI SY F T+FVDPPR Sbjct: 241 VSVNSALTNFAANQIDNIEVVRLSAEELTQALNKQRPFRRLAHIDIDSYDFSTVFVDPPR 300 Query: 302 SGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVL 361 +GLD T +V + ILYISCNP++L ++L +S TH IE A+FDQFP+T H+E GVL Sbjct: 301 AGLDADTEKLVCRFDRILYISCNPNTLAQNLVQISKTHRIEAAAVFDQFPWTAHLESGVL 360 Query: 362 LVR 364 L R Sbjct: 361 LSR 363 >gi|329895439|ref|ZP_08271020.1| tRNA (Uracil54-C5-)-methyltransferase [gamma proteobacterium IMCC3088] gi|328922322|gb|EGG29668.1| tRNA (Uracil54-C5-)-methyltransferase [gamma proteobacterium IMCC3088] Length = 365 Score = 358 bits (919), Expect = 7e-97, Method: Composition-based stats. Identities = 164/361 (45%), Positives = 222/361 (61%), Gaps = 8/361 (2%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQT- 67 +Y+ L EK R ++ F + S +RMRAEF IWHDGDDL++ MFD+ Sbjct: 10 RYQALLNEKTRRCTELFAPFTDLQPSVHDSPQDAFRMRAEFRIWHDGDDLFYAMFDKDNP 69 Query: 68 KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLL 127 KE +RID + GS I LM + I +P+LR +LFQI++LTS + +A+VTLIYH+ L Sbjct: 70 KEPLRIDSYPFGSPTIQRLMPALRTAIIDKPVLRERLFQIEFLTSTTKEALVTLIYHKAL 129 Query: 128 DDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSF 187 D W A L L R +IGR+ K K+ L+ + E L + YR E F Sbjct: 130 SDDWEASARALAKTLDCR-----IIGRSRKQKVVLNGSSISETLNINHSNYHYRYYEQGF 184 Query: 188 TQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA 247 TQPNA IN+ M+EWV DL+ELYCG GNF++ L++ F RVLA E+AK SV AA Sbjct: 185 TQPNAAINIKMIEWVSQHFGDTSRDLIELYCGLGNFTVPLSQKFRRVLATEVAKSSVHAA 244 Query: 248 RYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDID--IHSYRFKTIFVDPPRSGLD 305 NIA N++ N+ I R+++ E QA+R ER F RL + + Y F I VDPPR+GLD Sbjct: 245 HENIALNNIENIAIARLNAAETAQALRGERAFKRLAALPHALGEYDFAAILVDPPRAGLD 304 Query: 306 DATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 + ++ + Q+ I YISCNP++L RDL L+ THTI+ A+FDQFPYT H ECGV+L ++ Sbjct: 305 EDSLRLAQSIDSIAYISCNPETLARDLEPLTQTHTIDAWAVFDQFPYTHHTECGVILSKR 364 Query: 366 P 366 P Sbjct: 365 P 365 >gi|308801713|ref|XP_003078170.1| tRNA (ISS) [Ostreococcus tauri] gi|116056621|emb|CAL52910.1| tRNA (ISS) [Ostreococcus tauri] Length = 415 Score = 355 bits (910), Expect = 9e-96, Method: Composition-based stats. Identities = 161/373 (43%), Positives = 219/373 (58%), Gaps = 19/373 (5%) Query: 7 IDQYEQQLAEKVDRLRQMMLAFQ--VPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 + Y ++LAEK+ R + S +RMRAEF +WHDGD Y+ M D Sbjct: 48 PESYSEELAEKIAIARSHFDDVCALPTQTETHESARTEFRMRAEFKVWHDGDRSYYAMSD 107 Query: 65 QQT-KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIY 123 KE + I F S I LM ++ + LR KLFQ ++LT+ + A+V+L+Y Sbjct: 108 SDRPKEPVEIADFPMASKKIRELMPALLREVTKTETLRRKLFQANFLTTTTGDAVVSLLY 167 Query: 124 HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQI 183 HR LDD W A +R L I +IGRA K K L +D+V E++ V GR Y+Q+ Sbjct: 168 HRQLDDNWEREAEAMRARL-----GIDIIGRARKQKKVLAKDFVTEKVVVDGREFSYKQL 222 Query: 184 ENSFTQPNAGINVHMLEWVLAATKGIQGD-----------LLELYCGNGNFSLVLARHFD 232 E SFTQPNAGI MLEW + D LLELYCGNG+F++ LA F Sbjct: 223 EGSFTQPNAGIAAQMLEWARSVATNDSPDGEGSVDVSTRDLLELYCGNGHFTIALAPLFR 282 Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292 + LA EI+K SV AA+ N+AAN V+N+ I R+S++E + A+ RE+ RLKDI++ SY Sbjct: 283 KCLATEISKSSVAAAQVNMAANGVDNLVIARLSAEELSDALNGGREYTRLKDINLASYDL 342 Query: 293 KTIFVDPPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPY 352 TI VDPPR+G+ D + I+YISCNP++L RD +LS TH ++R A+FDQFPY Sbjct: 343 STILVDPPRAGMGDEVSTFCAQFERIIYISCNPETLARDCRVLSKTHDVKRFAVFDQFPY 402 Query: 353 TRHMECGVLLVRK 365 T H+E GVLL ++ Sbjct: 403 TPHLESGVLLKKR 415 >gi|145344269|ref|XP_001416659.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144576885|gb|ABO94952.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 418 Score = 353 bits (907), Expect = 2e-95, Method: Composition-based stats. Identities = 155/375 (41%), Positives = 215/375 (57%), Gaps = 21/375 (5%) Query: 7 IDQYEQQLAEKVDRLRQMMLAFQ--VPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 Y+++L EK R + F S +RMRAEF +WHDGD Y M D Sbjct: 48 PSSYDEELREKTAHARAHFDGVATLPSRTETFESAREEFRMRAEFKVWHDGDRSYFAMCD 107 Query: 65 QQT-KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIY 123 K+ + + F S I LM E++ + LR KLFQ ++LT+ + A+V+L+Y Sbjct: 108 SDRPKDPVEVVDFPMASARIRELMPELLREVTATETLRRKLFQANFLTTTTGDAVVSLLY 167 Query: 124 HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQI 183 HR LD+ W A +R L I +IGRA K K+ L +D+V E++ + G+ Y+Q+ Sbjct: 168 HRQLDEDWEREAEAMRARL-----GIDVIGRARKQKLVLAKDFVTEKVLIDGKEFSYKQL 222 Query: 184 ENSFTQPNAGINVHMLEWVLAATKGIQGDL-------------LELYCGNGNFSLVLARH 230 E SFTQPNAGI ML W +A D+ LELYCGNG+F++ LA Sbjct: 223 EGSFTQPNAGIAAQMLAWARSAAVSDSPDVVAAATPRDANRDFLELYCGNGHFTIALAPL 282 Query: 231 FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY 290 F + LA EI+K SV AA N+AAN ++NV R+S++E A+ RE+ RLKDID+ +Y Sbjct: 283 FRKCLATEISKSSVAAAHVNMAANGIDNVVTARLSAEELCDALDGGREYTRLKDIDLTTY 342 Query: 291 RFKTIFVDPPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQF 350 T+ VDPPR+G+ D + I+YISCNP++L RD IL TH I+R A+FDQF Sbjct: 343 DLSTVLVDPPRAGMGDEVSKFCARFDRIIYISCNPETLARDCKILGETHEIKRFAVFDQF 402 Query: 351 PYTRHMECGVLLVRK 365 PYT H+E G LLV++ Sbjct: 403 PYTPHLESGALLVKR 417 >gi|152985732|ref|YP_001350760.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas aeruginosa PA7] gi|166988118|sp|A6VCH5|TRMA_PSEA7 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|150960890|gb|ABR82915.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas aeruginosa PA7] Length = 363 Score = 353 bits (906), Expect = 3e-95, Method: Composition-based stats. Identities = 164/359 (45%), Positives = 225/359 (62%), Gaps = 9/359 (2%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHD--GDDLYHIMFDQQ- 66 Y QL +K RL ++ F P ++F S HYR+RAEF +W + ++ ++ MF+Q Sbjct: 11 YAAQLEDKKARLAGLLAPFAAPAPEVFESPREHYRLRAEFRLWRETGNENRHYAMFEQGD 70 Query: 67 TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL 126 + I+ F S IN LM + EP L KLFQ+++LT+ + A++TL YHR Sbjct: 71 KHTPILIEDFPIASRRINELMPRLKDAW-AEPALGFKLFQVEFLTTLAGDALITLCYHRP 129 Query: 127 LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS 186 +D AW++ A A + + L+GR+ +I + RDYV+E L VAGR YRQ E + Sbjct: 130 IDAAWQQAAEA-----LAAELGVSLVGRSRGKRIVVGRDYVEEELLVAGRRFRYRQPEGA 184 Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246 FTQPN +N ML W A + DLLELYCGNGNF+L LA +VLA EI+K SV A Sbjct: 185 FTQPNGEVNQKMLGWAYEALGEREDDLLELYCGNGNFTLPLATRVRKVLATEISKSSVNA 244 Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306 A N+A N V+NV +VR+S++E TQA+ R F RL DID+ SY F ++FVDPPR+G+D Sbjct: 245 ALANLADNAVDNVSLVRLSAEELTQALNEVRPFRRLADIDLKSYAFGSVFVDPPRAGMDP 304 Query: 307 ATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 T + + + ILYISCNP++L ++++ L TH I R ALFDQFPYT HME GVLL R+ Sbjct: 305 DTCELTRRFERILYISCNPETLAQNIAQLHDTHRISRCALFDQFPYTHHMESGVLLERR 363 >gi|119897603|ref|YP_932816.1| tRNA (uracil-5-)-methyltransferase [Azoarcus sp. BH72] gi|262827635|sp|A1K524|TRMA_AZOSB RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|119670016|emb|CAL93929.1| tRNA (uracil-5-)-methyltransferase [Azoarcus sp. BH72] Length = 364 Score = 352 bits (903), Expect = 5e-95, Method: Composition-based stats. Identities = 170/357 (47%), Positives = 230/357 (64%), Gaps = 6/357 (1%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD-QQT 67 +YE QLA K+ R + +P ++FRSEP+HYR+RAEF IWH L + MFD Sbjct: 10 EYETQLAAKIARFKSDFAPLDLPEPEVFRSEPLHYRLRAEFRIWHSEGRLDYAMFDPADP 69 Query: 68 KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLL 127 K + ID F + I A M + + LR KLFQ+++L + S + +++L+YHR L Sbjct: 70 KRPVLIDGFPAAAAPIAAAMPVLRERVMASEPLRRKLFQVEFLATLSGELMISLVYHRPL 129 Query: 128 DDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSF 187 + W A L A+ +QLIGR+ K KI L+RD+V E + GRTL Y+QIE SF Sbjct: 130 EADWEAAARELAAAM-----GVQLIGRSRKQKIVLERDWVLESFELDGRTLHYQQIEGSF 184 Query: 188 TQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA 247 +QPN G+N ML W +G DLLELYCGNGNF++ LA F +VLA E++K SV AA Sbjct: 185 SQPNGGVNRQMLVWARRQAEGSGADLLELYCGNGNFTVALAPLFGKVLATEMSKSSVRAA 244 Query: 248 RYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307 YN+AAN V+NV +VRM+S+E + A+ R + R++ ID+ YRF T+FVDPPRSGLD+A Sbjct: 245 HYNLAANAVDNVTMVRMASEEISDALAGGRAYRRMQGIDLAGYRFGTLFVDPPRSGLDEA 304 Query: 308 TVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 TV + + + ILYISCNP +L +++ L TH I A FDQFPYT H+ECGVLL + Sbjct: 305 TVALARRFDRILYISCNPQTLHDNIAALRDTHGIAAAAAFDQFPYTHHLECGVLLQK 361 >gi|313682239|ref|YP_004059977.1| tRNA (uracil-5-)-methyltransferase [Sulfuricurvum kujiense DSM 16994] gi|313155099|gb|ADR33777.1| tRNA (uracil-5-)-methyltransferase [Sulfuricurvum kujiense DSM 16994] Length = 371 Score = 352 bits (903), Expect = 5e-95, Method: Composition-based stats. Identities = 156/364 (42%), Positives = 218/364 (59%), Gaps = 6/364 (1%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHI 61 S + YE QL KV ++++ N+ + S YR RAEF I+HD + + Sbjct: 11 SCRDYEEGYEGQLERKVSAVQELFFPLYSGNITVCPSPAERYRSRAEFKIYHDDGGISYA 70 Query: 62 MFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTL 121 M + ++I+ S I ++M +++ I + KLF +D+L S + +++ Sbjct: 71 MNRLDRQGALKIERCGIVSPSIASVMEKLLIEISDLGI-SHKLFGVDFLASGEGEITLSM 129 Query: 122 IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYR 181 +YH+ LDD W+ A L L + +IGR+ K K+ L +DYV E L + GR Y Sbjct: 130 LYHKALDDEWKSKAHELEKRL-----GVYVIGRSRKQKVVLSQDYVTETLNIGGRMYRYI 184 Query: 182 QIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241 IENSFTQPN +N M+ W L I GDLLELYCG GNF++ A FDRVLA EI+K Sbjct: 185 HIENSFTQPNPRVNEQMITWSLGQIDKIGGDLLELYCGAGNFTIPFATKFDRVLATEISK 244 Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301 S+ AA+ N+A N V N++ VR+S++EFTQA+ REF RL+ +++ Y KT+FVDPPR Sbjct: 245 ASIHAAKQNMALNGVGNIEFVRLSAEEFTQALDGVREFRRLEGLNVADYHLKTLFVDPPR 304 Query: 302 SGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVL 361 +GL + + HILYISCNP++L RDL ILS THTIE +A FDQFPYT H+E GV Sbjct: 305 AGLGEEPCAFASRFDHILYISCNPETLLRDLEILSRTHTIEAMAAFDQFPYTHHLEMGVK 364 Query: 362 LVRK 365 L +K Sbjct: 365 LTKK 368 >gi|159462564|ref|XP_001689512.1| tRNA (uracil-5-)-methyltransferase [Chlamydomonas reinhardtii] gi|158283500|gb|EDP09250.1| tRNA (uracil-5-)-methyltransferase [Chlamydomonas reinhardtii] Length = 364 Score = 352 bits (902), Expect = 8e-95, Method: Composition-based stats. Identities = 165/369 (44%), Positives = 228/369 (61%), Gaps = 13/369 (3%) Query: 4 TLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63 + + Y+ QL K+ +L+Q+ F P L++F S P HYRMR+EF + L+ Sbjct: 2 AIDAEDYDGQLDRKLTKLKQLFQEFDPPQLEVFTSPPTHYRMRSEFTVEQRDGPLHFKGG 61 Query: 64 DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIY 123 + R+R+D F + +N LM + P LR +LFQ+++ T+ + A+VTL+Y Sbjct: 62 KPKGPRRVRVDTFPVATKQVNELMAVVREEADKTPELRQRLFQVNFHTTLAGDAMVTLLY 121 Query: 124 HRLLDDAWRECAIRLRD------ALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRT 177 HR L W+ A RLRD A + +IGR+ K KI LD D+V ERLTV GRT Sbjct: 122 HRKLGPEWQAAAERLRDALAATPTAAAAGVRPHVIGRSRKQKIALDADFVLERLTVGGRT 181 Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAV 237 + +Q+E SF+QPN + HML W DLLELYCGNGNF++ L+ +F RV+A Sbjct: 182 FVQKQVEGSFSQPNGHVCQHMLTWA------QDDDLLELYCGNGNFTIPLSANFRRVVAT 235 Query: 238 EIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI-DIHSYRFKTIF 296 E+AK SVEAARYN+ AN V+NV + RM+S+EF MR RL+ + + R +TI Sbjct: 236 EVAKSSVEAARYNMEANGVSNVFLARMASEEFAVTMRERGSRRRLEGLEGWEALRLRTIL 295 Query: 297 VDPPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHM 356 VDPPR+GLDD TV +++ + I+YISCNPD+LC +L ++ TH I R A FDQFPYT H+ Sbjct: 296 VDPPRAGLDDFTVELLKEFDRIVYISCNPDTLCANLKAIAPTHRIARFAAFDQFPYTHHL 355 Query: 357 ECGVLLVRK 365 ECGV LVR+ Sbjct: 356 ECGVYLVRR 364 >gi|149193955|ref|ZP_01871053.1| tRNA (uracil-5-)-methyltransferase [Caminibacter mediatlanticus TB-2] gi|149135908|gb|EDM24386.1| tRNA (uracil-5-)-methyltransferase [Caminibacter mediatlanticus TB-2] Length = 363 Score = 351 bits (901), Expect = 9e-95, Method: Composition-based stats. Identities = 144/365 (39%), Positives = 219/365 (60%), Gaps = 15/365 (4%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHI 61 S L YE+QL K D+L++M F++P +++ + H+R RAEF +WH+GD Y+ Sbjct: 11 SCVLWQVPYEEQLKMKKDKLKEMFSKFEIPEIEVIYDKDEHFRARAEFRVWHEGDKTYYA 70 Query: 62 MFDQQ--TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119 M ++ + + I+ I LM ++M+ I LR KL+++ +L++ + IV Sbjct: 71 MRKRKEEGRGVIPIEECKIVDKAIYELMPKLMSEIEKNQNLRLKLYEVHFLSNSKGEVIV 130 Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179 TLIYHR +D++ E RL+D + ++ K D++Y+ E L + G+T Sbjct: 131 TLIYHRKVDESIAEDIKRLKDKFKNVDFIVR----KKGRKYIFDKNYLIEELEIKGKTYK 186 Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEI 239 Y+ IEN+FTQPN IN M+ WVL T ++GDL+ELYCGNGNF++ L+ +F +V+A EI Sbjct: 187 YKIIENTFTQPNREINKKMISWVLDNTSNLKGDLVELYCGNGNFTIPLSENFRKVVATEI 246 Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299 S+EAA YN N+ N+ + MS+ EF++ +++ FN SY K + +DP Sbjct: 247 NPESIEAATYNAEINNRKNISFLAMSAAEFSE-LKKTGFFN--------SYDLKNVLIDP 297 Query: 300 PRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359 PR+GLD+ + V + +I+YISCNP++L RDL LS I+ A FDQFPYT HMECG Sbjct: 298 PRAGLDEKSRKFVNEFDNIIYISCNPETLKRDLETLSKNRKIKAFAFFDQFPYTNHMECG 357 Query: 360 VLLVR 364 V+L R Sbjct: 358 VVLER 362 >gi|330895517|gb|EGH27828.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas syringae pv. japonica str. M301072PT] Length = 333 Score = 351 bits (900), Expect = 1e-94, Method: Composition-based stats. Identities = 156/336 (46%), Positives = 208/336 (61%), Gaps = 6/336 (1%) Query: 31 PNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE-RMRIDYFMPGSLLINALMIE 89 P Q+F S HYR+RAEF +W + Y+ MF + ++ S INALM Sbjct: 3 PEPQVFDSPREHYRLRAEFRLWREDQKRYYAMFAPGDNRTPILLEGLPIASERINALMPV 62 Query: 90 MMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQI 149 + P L KLFQ+D+LT+ + A++TL YHR LD W+ A + A + + Sbjct: 63 LRERWEASPTLNHKLFQVDFLTTLAGDAMITLCYHRPLDAEWQAAAEQ-----LAAELDV 117 Query: 150 QLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGI 209 LIGR+ K+ + DYV E+L VAGRT YRQ E +FTQPN +N ML W A Sbjct: 118 SLIGRSKGQKLVIGHDYVTEKLDVAGRTFSYRQPEGAFTQPNGTVNGKMLNWAFDALGER 177 Query: 210 QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269 Q DLLELYCGNGNF+L LA +VLA EI+K SV AA N+ N V+NV +VR+S++E Sbjct: 178 QDDLLELYCGNGNFTLPLATRVRKVLATEISKTSVNAALSNLDENGVDNVTLVRLSAEEL 237 Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYISCNPDSLC 329 T+A+ R F RL +D+ SY F ++FVDPPR+G+D T + + + ILYISCNP++L Sbjct: 238 TEALNEVRPFRRLHGVDLKSYDFGSVFVDPPRAGMDPDTCELTRRFERILYISCNPETLA 297 Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 +++ L TH +ER ALFDQFPYT HME GVLLVR+ Sbjct: 298 ANIAQLHDTHRVERCALFDQFPYTHHMESGVLLVRR 333 >gi|296274443|ref|YP_003657074.1| tRNA (uracil-5-)-methyltransferase [Arcobacter nitrofigilis DSM 7299] gi|296098617|gb|ADG94567.1| tRNA (uracil-5-)-methyltransferase [Arcobacter nitrofigilis DSM 7299] Length = 373 Score = 350 bits (899), Expect = 2e-94, Method: Composition-based stats. Identities = 151/368 (41%), Positives = 220/368 (59%), Gaps = 12/368 (3%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDD---- 57 S TL YE+QLA K+ R +Q + +I RSE H+R RAEF W + DD Sbjct: 11 SCTLYHMNYEEQLAYKLSREKQRFQDITTMDFEIIRSEEEHFRNRAEFRFWKNYDDEKNP 70 Query: 58 -LYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116 L + M K + +D S I+ LM +++ I +L K++ +++L S ++ Sbjct: 71 TLSYGMTSFD-KNILEVDKCSIVSKQIDELMPKLLDEISQSEILNYKIYSVEFLGSTTND 129 Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGR 176 +VTLIYH+ LD W + A +++ L+ I++IGR+ K KI L D++ E L + Sbjct: 130 MLVTLIYHKKLDTTWEKVAKEVQERLN-----IKIIGRSRKQKIVLKEDFIKEELNINDN 184 Query: 177 TLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLA 236 + E FTQPN +N+ M+EWVL + DL ELYCG GNF++ L+ F++VLA Sbjct: 185 VFKFHYKEGGFTQPNTKVNIKMIEWVL-NNIETKDDLCELYCGGGNFTIPLSTKFNKVLA 243 Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296 EI+K S+ +A N N++ N+ +RMS++EF +A+ REF RLKDI++ Y F TIF Sbjct: 244 TEISKTSINSALLNCELNNITNIDFIRMSAEEFVEALNSVREFRRLKDINLSDYNFSTIF 303 Query: 297 VDPPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHM 356 VDPPRSGLDD T +V+ Y I+YISCNP++L RDL L +H I +LFDQF Y+ H+ Sbjct: 304 VDPPRSGLDDTTRELVKNYEQIIYISCNPETLHRDLKELIKSHQILNFSLFDQFSYSGHI 363 Query: 357 ECGVLLVR 364 E GV+L + Sbjct: 364 ETGVILKK 371 >gi|78777216|ref|YP_393531.1| tRNA (uracil-5-)-methyltransferase [Sulfurimonas denitrificans DSM 1251] gi|123550331|sp|Q30RT5|TRMA_SULDN RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|78497756|gb|ABB44296.1| tRNA (uracil-5-)-methyltransferase [Sulfurimonas denitrificans DSM 1251] Length = 369 Score = 350 bits (897), Expect = 2e-94, Method: Composition-based stats. Identities = 156/364 (42%), Positives = 222/364 (60%), Gaps = 7/364 (1%) Query: 3 GTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGD-DLYHI 61 + YE QL++KV+ +++ F + + +F S +YR R+EF IWH+GD + + Sbjct: 12 CIVYDGGYETQLSQKVELNKELFAPFYMGKISVFESPRSNYRSRSEFKIWHEGDEKINYA 71 Query: 62 MFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTL 121 M + ID S I ALM +++ I+ + KLF +D+L+S S + +V+L Sbjct: 72 MNRADKGGVILIDECPQVSSAIFALMPKLLRAIKRHKI-DFKLFGVDFLSSNSGEIVVSL 130 Query: 122 IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYR 181 +YHR LD ++E A + D L I +IGR+ K+ + +DYV E L V G + Sbjct: 131 LYHRALDSTFKEIAEIISDEL-----DIYIIGRSRGQKVVIKQDYVTEILHVDGVEFKFN 185 Query: 182 QIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241 IENSFTQPNA +N M+ W L + DLLELYCG GNF++ A + ++LA EI+K Sbjct: 186 YIENSFTQPNAKVNEQMIGWALRELPNMDADLLELYCGAGNFTIPFASKYRKILATEISK 245 Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301 S+ AA+ N++ N V N+ VRM +EF +A+ R FNR+K+IDI SY KTIFVDPPR Sbjct: 246 SSINAAKSNMSLNKVKNISFVRMGVEEFVEALDGVRIFNRMKEIDIDSYEIKTIFVDPPR 305 Query: 302 SGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVL 361 SG+D+AT Y +I+YISCNP +L RDL +L+ TH + +ALFDQFPYT H E G Sbjct: 306 SGMDEATCRFASRYENIIYISCNPQTLLRDLELLTKTHNVIDMALFDQFPYTHHAEMGAK 365 Query: 362 LVRK 365 LV+K Sbjct: 366 LVKK 369 >gi|145640957|ref|ZP_01796539.1| tRNA (uracil-5-)-methyltransferase [Haemophilus influenzae R3021] gi|145274471|gb|EDK14335.1| tRNA (uracil-5-)-methyltransferase [Haemophilus influenzae 22.4-21] Length = 304 Score = 349 bits (896), Expect = 3e-94, Method: Composition-based stats. Identities = 175/304 (57%), Positives = 227/304 (74%) Query: 62 MFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTL 121 MFDQ T +R R+D F S+LIN +M ++ ++ + +L KLFQIDYL++ S++ IV+L Sbjct: 1 MFDQATLQRYRVDEFPIASMLINRMMQTLLPLLKQQEVLHKKLFQIDYLSTLSNKIIVSL 60 Query: 122 IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYR 181 +YH+ L + W A L+D L + + +Q+IGRA+K KIC ++DYVDE L V GR +YR Sbjct: 61 LYHKTLTEEWESAAKNLKDLLEKQGFNVQIIGRASKQKICFEQDYVDEVLPVNGRNYVYR 120 Query: 182 QIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241 Q+ENSFTQPNA +N MLEW + T+ +GDLLELYCGNGNFS+ LA++F +VLA EIAK Sbjct: 121 QVENSFTQPNAMVNCKMLEWAIDCTQNSEGDLLELYCGNGNFSIALAQNFRKVLATEIAK 180 Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301 PSV AA++NIA N V+N++I+RMS++EFTQAM R FNRLK ID+ SY TIFVDPPR Sbjct: 181 PSVAAAQFNIAENKVDNLQIIRMSAEEFTQAMNGVRAFNRLKGIDLKSYECNTIFVDPPR 240 Query: 302 SGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVL 361 +GLD TV +VQ Y ILYISCNP +LC +L LS TH IE+ ALFDQFPYT HME G+ Sbjct: 241 AGLDPDTVKLVQNYDRILYISCNPHTLCDNLVELSKTHRIEKAALFDQFPYTDHMESGLW 300 Query: 362 LVRK 365 L+RK Sbjct: 301 LIRK 304 >gi|268679645|ref|YP_003304076.1| tRNA (uracil-5-)-methyltransferase [Sulfurospirillum deleyianum DSM 6946] gi|268617676|gb|ACZ12041.1| tRNA (uracil-5-)-methyltransferase [Sulfurospirillum deleyianum DSM 6946] Length = 367 Score = 349 bits (896), Expect = 3e-94, Method: Composition-based stats. Identities = 145/363 (39%), Positives = 219/363 (60%), Gaps = 7/363 (1%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHI 61 S TL Y+ Q+A K ++ + V F S HYR RAEF IW +G+ +++ Sbjct: 11 SCTLYALDYQAQVAHKKTAIKTLFEPLHVKEFTFFESACEHYRGRAEFRIWKEGEKIHYA 70 Query: 62 MFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTL 121 M K + ID I+ LM +++ I +LR ++F I++L+S S+ +VTL Sbjct: 71 MGAMDKKRAVCIDACPKVEERIDTLMPKLLKAIEGVDVLRERIFAIEFLSS-SEHLLVTL 129 Query: 122 IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYR 181 IYH+ LD AW + A +L + I +IGR+ K L +D+++ER + ++ Y Sbjct: 130 IYHKPLDKAWEKEAKKL-----EEVFNIFVIGRSRGIKKVLSQDFIEERFALEAKSYRYH 184 Query: 182 QIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241 IE F+QPN +N M+ WVL+ + + DLLELYCG GNF+L +A F++VLA EI+K Sbjct: 185 IIEGGFSQPNRTMNQTMIGWVLSHLESCE-DLLELYCGYGNFTLPMAGKFNKVLATEISK 243 Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301 S+ +A N N V+N+ +R+S++E T A+ +ER FNRL +++ Y F +FVDPPR Sbjct: 244 TSIASALKNCELNDVSNITFLRLSAEELTSALNKERTFNRLAGMNLDDYAFSHVFVDPPR 303 Query: 302 SGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVL 361 SG+D+ ++ + + +I+YISCNP +L RDL +L +TIE ALFDQFP T H+E GV+ Sbjct: 304 SGMDEKSLAFISRFENIIYISCNPQTLKRDLEVLCQNYTIEHFALFDQFPNTEHLESGVI 363 Query: 362 LVR 364 L R Sbjct: 364 LKR 366 >gi|307109771|gb|EFN58008.1| hypothetical protein CHLNCDRAFT_20361 [Chlorella variabilis] Length = 461 Score = 349 bits (896), Expect = 3e-94, Method: Composition-based stats. Identities = 161/372 (43%), Positives = 230/372 (61%), Gaps = 14/372 (3%) Query: 4 TLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63 + QY+ QL K R+R + F P LQ FRS P HYRMRAEF +WH+GDDL++IM+ Sbjct: 42 AIDPSQYDSQLEAKEQRIRNLFAEFNPPPLQAFRSRPEHYRMRAEFRVWHEGDDLFYIMY 101 Query: 64 ---DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLF---------QIDYLT 111 + +R+D F S L+N LM + I+ P+LR KL Q ++ T Sbjct: 102 EKDGEGKNRDVRVDSFPVASELLNELMGLLRDHIKASPILRHKLGHQPRKVSLPQANFHT 161 Query: 112 SQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERL 171 + S Q++V+LIYH+ L + W+E + + Q+IGR+ K+C+D D V E L Sbjct: 162 TLSGQSMVSLIYHKKLGEEWKEELRGVLAKAPSSTATPQIIGRSRGQKVCVDADEVQEVL 221 Query: 172 TVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARH 230 +V G+ L Q+E SF+QPN G+ HML W +AT G G +LLELYCGNGNF++ LA + Sbjct: 222 SVDGQQLKQVQVEASFSQPNGGMCQHMLSWARSATAGSTGGELLELYCGNGNFTVALAPN 281 Query: 231 FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY 290 F + + +++K SV AA+ N N V NV + RMSS+EFT A + R+ RL+ +D+ S Sbjct: 282 FRKA-SSQVSKSSVAAAKRNFELNGVGNVFVARMSSEEFTAAWKEGRQMRRLEGLDLQSL 340 Query: 291 RFKTIFVDPPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQF 350 F T+ VDPPR+GLD TV +++ + ++YISCNPD+L +L+ + I+R A+FDQF Sbjct: 341 SFTTLLVDPPRAGLDSQTVQLLKDFQSVVYISCNPDTLHANLAEVRDLFEIKRFAMFDQF 400 Query: 351 PYTRHMECGVLL 362 PYT H+ECGV L Sbjct: 401 PYTHHVECGVYL 412 >gi|157738407|ref|YP_001491091.1| tRNA (uracil-5-)-methyltransferase [Arcobacter butzleri RM4018] gi|172045655|sp|A8EWU8|TRMA_ARCB4 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|157700261|gb|ABV68421.1| tRNA (uracil-5-)-methyltransferase [Arcobacter butzleri RM4018] Length = 375 Score = 348 bits (893), Expect = 7e-94, Method: Composition-based stats. Identities = 148/368 (40%), Positives = 228/368 (61%), Gaps = 11/368 (2%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLY-- 59 S TL YE+QL K+ R ++ F + I +S ++R RAEF IW + + Sbjct: 11 SCTLFDKTYEEQLNYKIQREKERFSNFTNIDFDIIKSNESNFRNRAEFRIWWEKGENNKE 70 Query: 60 ---HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116 + M D + K ++I+ S I LM +++ ++ + L KLF +++L S + Sbjct: 71 ILSYAMNDFK-KNILKINSCEMVSFHIKELMPKLIDELQNDLELSFKLFAVEFLGSSTKD 129 Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGR 176 +VTLIYH+ L+++W + A + L+ I++IGR+ K ++ L DY++E L ++ + Sbjct: 130 MLVTLIYHKKLEESWIQKAKEIEKKLN-----IKIIGRSKKQRLVLTNDYINETLNISNQ 184 Query: 177 TLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLA 236 + EN FTQPN +NV M+EWVL TK DL ELYCG GNF++ L+ F +VLA Sbjct: 185 NFFFAYEENGFTQPNTNVNVQMIEWVLENTKNSSKDLCELYCGGGNFTIPLSTKFRKVLA 244 Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296 EI+K S+++A N + N + ++ +RMS+++F QA+ + R FNRLKDI++ Y F TIF Sbjct: 245 TEISKTSIKSALRNCSLNKIESISFIRMSAEDFVQALNKVRAFNRLKDINLDDYEFDTIF 304 Query: 297 VDPPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHM 356 +DPPRSGLDD T + + + +I+YISCNP++L RDL L+ TH IE+ ALFDQF +T H+ Sbjct: 305 MDPPRSGLDDTTRNLAKDFENIIYISCNPETLHRDLEELTKTHEIEKFALFDQFAFTNHI 364 Query: 357 ECGVLLVR 364 E GV+L + Sbjct: 365 ESGVILRK 372 >gi|315636702|ref|ZP_07891932.1| tRNA (uracil-5-)-methyltransferase [Arcobacter butzleri JV22] gi|315479017|gb|EFU69720.1| tRNA (uracil-5-)-methyltransferase [Arcobacter butzleri JV22] Length = 375 Score = 348 bits (892), Expect = 1e-93, Method: Composition-based stats. Identities = 147/368 (39%), Positives = 228/368 (61%), Gaps = 11/368 (2%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLY-- 59 S TL YE+QL K+ R ++ F + I +S ++R RAEF IW + + Sbjct: 11 SCTLFDKTYEEQLNYKIQREKERFSNFTNIDFDIIKSNESNFRNRAEFRIWWEKGENNKE 70 Query: 60 ---HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116 + M D + K ++I+ S I LM +++ ++ + L KLF +++L S + Sbjct: 71 ILSYAMNDFK-KNILKINSCEMVSHHIKELMPKLIDELQNDLELSFKLFAVEFLGSSTKD 129 Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGR 176 +VTLIYH+ L+++W + A + L+ I++IGR+ K ++ L DY++E L ++ + Sbjct: 130 MLVTLIYHKKLEESWIQKAKEIEKRLN-----IKIIGRSKKQRLVLTNDYINETLNISNQ 184 Query: 177 TLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLA 236 + EN FTQPN +NV M+EWVL TK DL ELYCG GNF++ L+ F +VLA Sbjct: 185 NFFFAYEENGFTQPNTNVNVQMIEWVLKNTKNSSKDLCELYCGGGNFTIPLSTKFRKVLA 244 Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296 EI+K S+++A N + N + ++ +RMS+++F QA+ + R FNRLKDI++ Y F TIF Sbjct: 245 TEISKTSIKSALRNCSLNKIESISFIRMSAEDFVQALNKVRAFNRLKDINLDDYEFDTIF 304 Query: 297 VDPPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHM 356 +DPPRSGLD+ T + + + +I+YISCNP++L RDL L+ TH IE+ ALFDQF +T H+ Sbjct: 305 MDPPRSGLDNTTRNLAKDFENIIYISCNPETLHRDLEELTKTHKIEKFALFDQFAFTNHI 364 Query: 357 ECGVLLVR 364 E GV+L + Sbjct: 365 ESGVILRK 372 >gi|297518619|ref|ZP_06937005.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli OP50] Length = 286 Score = 346 bits (888), Expect = 3e-93, Method: Composition-based stats. Identities = 186/281 (66%), Positives = 223/281 (79%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L +QYE QLAEKV RL+ MM F ++FRS HYRMRAEF IWHDGDDLYHI+FD Sbjct: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTK R+R+D F S LIN LM M+A +R P+LR KLFQIDYLT+ S+QA+V+L+YH Sbjct: 66 QQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + LDD WR+ A LRDAL A+ + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E Sbjct: 126 KKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPN +N+ MLEW L TKG +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV Sbjct: 186 NSFTQPNTAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285 AA+YNIAANH++NV+I+RM+++EFTQAM REFNRL+ I Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGI 286 >gi|254514426|ref|ZP_05126487.1| tRNA (uracil-5-)-methyltransferase [gamma proteobacterium NOR5-3] gi|219676669|gb|EED33034.1| tRNA (uracil-5-)-methyltransferase [gamma proteobacterium NOR5-3] Length = 366 Score = 342 bits (878), Expect = 4e-92, Method: Composition-based stats. Identities = 159/361 (44%), Positives = 224/361 (62%), Gaps = 8/361 (2%) Query: 7 IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66 + YEQ A+K R+ + M +P Q F S YR+RAEF IWHD DDL ++MFD + Sbjct: 10 PENYEQLFAQKCARVEKDMQFGSLPPAQRFSSPSQSYRVRAEFRIWHDEDDLNYVMFDPE 69 Query: 67 T-KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHR 125 + + + I F+P I LM + ++L P LR KLFQ +++ + + + +VTLIYHR Sbjct: 70 SPRTPVIIREFVPALEPIRQLMPRLREYLKLRPTLRRKLFQAEFMATTTGELLVTLIYHR 129 Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIEN 185 LDDAW E A L +A + + L+GR+ K K + D+V + V GR YRQ E Sbjct: 130 ALDDAWEEEATTLAEA-----FGVSLVGRSRKQKRVIGHDFVTDEFVVNGRIYSYRQYEQ 184 Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 SF QPNA +N ML W + GDLLELYCGNGNF+L LA F +V+A E++K Sbjct: 185 SFVQPNAPVNQKMLNWAWEQSAHCGGDLLELYCGNGNFTLPLASQFPQVIATELSKSGTR 244 Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDID--IHSYRFKTIFVDPPRSG 303 AA N++ANH+ NV++VR+S++E +QAM REF RL + + Y +T+FVDPPR+G Sbjct: 245 AALENLSANHIENVEVVRLSAEEVSQAMAGVREFRRLASLPKALGDYDLRTVFVDPPRAG 304 Query: 304 LDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363 LD AT+ V+ + I+Y+SCN +L ++ L +TH++ ALFDQFPYT H+E V+L Sbjct: 305 LDPATLDCVRQFEAIIYVSCNLQTLKANIHALESTHSVASFALFDQFPYTHHIESAVVLR 364 Query: 364 R 364 R Sbjct: 365 R 365 >gi|157165225|ref|YP_001466961.1| tRNA (uracil-5-)-methyltransferase [Campylobacter concisus 13826] gi|226705971|sp|A7ZDV3|TRMA_CAMC1 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|112800933|gb|EAT98277.1| tRNA (uracil-5-)-methyltransferase [Campylobacter concisus 13826] Length = 367 Score = 342 bits (877), Expect = 5e-92, Method: Composition-based stats. Identities = 133/364 (36%), Positives = 204/364 (56%), Gaps = 8/364 (2%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHI 61 S TL Y +Q++ K D ++Q F +F S P HYR RAEF IWH+G L + Sbjct: 11 SCTLFTS-YSEQISFKTDLIKQNFSHFYDGKFDLFSSSPKHYRTRAEFGIWHEGSKLSYT 69 Query: 62 MFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTL 121 M + +++ ID I+ LM ++ +++ + +LR KLF ++++ +S +VTL Sbjct: 70 MHASEKGKKVFIDECPKVCEQISHLMPRLLESLQDDEILRTKLFGVEFIACKSG-TLVTL 128 Query: 122 IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYR 181 +YH+ LD + L A K + ++ R+ K+ + + L V G+ + Sbjct: 129 LYHKKLDSEFEAAMKIL-----ASKLDVMILARSRGQKLLSGELNLVDELNVDGQIYKFS 183 Query: 182 QIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241 EN+F QPN +N M+ W DLLELYCG+GNF++ L+ F VLA EI+K Sbjct: 184 LSENAFIQPNKAVNEKMIAWAKE-CVQSGADLLELYCGHGNFTIPLSFKFKNVLATEISK 242 Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301 S+ A N N V N+K +RM + E A REFNRLKDI + + F + VDPPR Sbjct: 243 SSIANALKNCELNGVENIKFLRMDADELMSAFAGVREFNRLKDIKLSDFNFSHVLVDPPR 302 Query: 302 SGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVL 361 +GL ++ + ++ + +I+YISCNP++L +L+ L+ +H + + ALFDQF T H+ECGVL Sbjct: 303 AGLSESVINFIRNFKNIIYISCNPETLKENLNELTKSHKVIKFALFDQFANTHHIECGVL 362 Query: 362 LVRK 365 L K Sbjct: 363 LEAK 366 >gi|226326751|ref|ZP_03802269.1| hypothetical protein PROPEN_00611 [Proteus penneri ATCC 35198] gi|225204588|gb|EEG86942.1| hypothetical protein PROPEN_00611 [Proteus penneri ATCC 35198] Length = 292 Score = 342 bits (877), Expect = 6e-92, Method: Composition-based stats. Identities = 170/288 (59%), Positives = 219/288 (76%) Query: 1 MSGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60 M +L Y+ QL EK RL+ MM F P ++F S HYRMRAEF IWH+ D LYH Sbjct: 1 MQNSLPTQTYQSQLNEKTQRLQTMMAPFNAPEAEVFSSPEQHYRMRAEFRIWHEDDSLYH 60 Query: 61 IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVT 120 IMFDQ+TK+R+R+D F S LIN +M+ ++A I+ +P LR KLFQIDYL++ S++ IV+ Sbjct: 61 IMFDQETKQRIRVDQFPVASQLINKMMVVLLAEIKDKPTLRKKLFQIDYLSTLSNKIIVS 120 Query: 121 LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIY 180 L+YH+ +D+ W++ A LR L A+ + +QLIGRA KTKI LD D++DE L VAG+ +IY Sbjct: 121 LLYHKKIDETWQQEAQALRQILIAQGFDVQLIGRAYKTKIMLDNDFIDEVLPVAGKEMIY 180 Query: 181 RQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240 RQ+ENSFTQPNA +N+ MLEW L AT+ +GDLLELYCGNGNFSL LAR+FDRVLA EIA Sbjct: 181 RQVENSFTQPNAQVNIKMLEWALKATENAKGDLLELYCGNGNFSLALARNFDRVLATEIA 240 Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288 KPSV AA+YNIA NH++NVKI+RMS+++FTQAM REF RL+ ID+ Sbjct: 241 KPSVYAAQYNIAMNHIDNVKIIRMSAEDFTQAMNGVREFKRLEGIDLK 288 >gi|126641572|ref|YP_001084556.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter baumannii ATCC 17978] Length = 322 Score = 341 bits (875), Expect = 1e-91, Method: Composition-based stats. Identities = 154/326 (47%), Positives = 221/326 (67%), Gaps = 11/326 (3%) Query: 45 MRAEFHIWHDGDDLYHIMF----DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLL 100 MRAEF IWH +D+++ MF D + K +RID F IN LM ++A ++ LL Sbjct: 1 MRAEFRIWHTENDMFYAMFERNDDGKQKTVVRIDEFPIADKSINDLMPLLLAELKANSLL 60 Query: 101 RAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKI 160 +LF++D+L + S + +VTLIYHR L+ W + A L + L+ I+++GR+ KI Sbjct: 61 SQRLFEVDFLATLSGEMLVTLIYHRKLNQEWEQAAKALAEKLN-----IKIMGRSRGQKI 115 Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGN 220 + D+V E + R+ Y+QIE+SFTQPNA + ML+W A +G + LLELYCGN Sbjct: 116 VIGDDFVVEEFELLNRSFKYKQIESSFTQPNAQVCKKMLQWACDAAEGSKKHLLELYCGN 175 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 GNF+L L+ F+RVLA E+AK SV AA++NI N ++N+++ R+S++EFTQA + EREF Sbjct: 176 GNFTLPLSLKFERVLATELAKSSVYAAQWNIEQNQIDNIQVARLSAEEFTQAYQGEREFR 235 Query: 281 RLKD--IDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTT 338 RL++ IDI SY F T+FVDPPR+G+DD T+ ++Q + I+YISCNPD+L +L L+ T Sbjct: 236 RLQEAYIDIQSYDFGTVFVDPPRAGIDDETLKLLQGFERIIYISCNPDTLYENLKTLTQT 295 Query: 339 HTIERLALFDQFPYTRHMECGVLLVR 364 H + + ALFDQFPYT H+E GVLL + Sbjct: 296 HRVTKFALFDQFPYTHHVESGVLLEK 321 >gi|224373183|ref|YP_002607555.1| tRNA (uracil-5-)-methyltransferase [Nautilia profundicola AmH] gi|262827704|sp|B9LA97|TRMA_NAUPA RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|223589187|gb|ACM92923.1| tRNA (uracil-5-)-methyltransferase [Nautilia profundicola AmH] Length = 365 Score = 340 bits (873), Expect = 2e-91, Method: Composition-based stats. Identities = 131/365 (35%), Positives = 213/365 (58%), Gaps = 13/365 (3%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHI 61 S L Y++QL K ++L++M F +P +++ H+R RAEF +WH+GD Y+ Sbjct: 11 SCVLWEMPYDEQLKMKSEKLKEMFSEFDMPEIEVVHGSDEHFRARAEFRVWHEGDKSYYA 70 Query: 62 MFDQQ--TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119 M ++ + + I+ I +M ++ I LR KL++ID+L++ + I+ Sbjct: 71 MRKRKEDGRGVIPIEECKIVDKAIYDIMTPLLKEIEKNDNLRFKLYEIDFLSNSKGELII 130 Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179 TLIYH+ +D++ E +L++ + ++ K D++Y+ E L + +T Sbjct: 131 TLIYHKKVDESIAEDIKKLKEKFKNADFIVR----KKGRKYVFDKNYLIEELNINSKTYK 186 Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEI 239 Y+ IEN+F+QPN +N M+EW + ++ ++GDL+ELYCGNGNF++ L+ F++V+A EI Sbjct: 187 YKIIENTFSQPNRQMNQKMIEWAMRNSEDLKGDLVELYCGNGNFTIPLSERFNKVIATEI 246 Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299 +K S+EAA YN N +N+ + MS+ EF++ + I Y K I +DP Sbjct: 247 SKESIEAATYNAEINARDNITFLAMSAAEFSKLYKDRSPL-------ITKYDLKNILIDP 299 Query: 300 PRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359 PR+GLDD + V + +I+YISCNP++L RDL L+ I+ A FDQFPYT H ECG Sbjct: 300 PRAGLDDKSREFVNEFDNIIYISCNPETLQRDLKTLAKGREIKAFAFFDQFPYTNHAECG 359 Query: 360 VLLVR 364 V+L + Sbjct: 360 VILKK 364 >gi|255075201|ref|XP_002501275.1| predicted protein [Micromonas sp. RCC299] gi|226516539|gb|ACO62533.1| predicted protein [Micromonas sp. RCC299] Length = 459 Score = 330 bits (847), Expect = 2e-88, Method: Composition-based stats. Identities = 154/394 (39%), Positives = 217/394 (55%), Gaps = 40/394 (10%) Query: 7 IDQYEQQLAEKVDRLRQMM------------------LAFQVPNLQIFRSEPIHYRMRAE 48 D Y ++L K++R R +P ++ S ++RMRAE Sbjct: 69 PDTYREELDVKIERARSHFAAAPAPAPTPEVPHPKPLEEIHLPPTEVHESARSNFRMRAE 128 Query: 49 FHIWHDGDDLYHIMFDQQT-KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQI 107 F +WHDGD Y MFD K + + F GS IN LM + I ++R KLFQ+ Sbjct: 129 FRVWHDGDRSYLAMFDSDDPKTPIEVPSFPMGSEKINELMPAFIEEIGRSEVIRRKLFQV 188 Query: 108 DYLTSQSDQAIVTLIYHRLLD-DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY 166 ++LT+ A+++++YH+ + D W A ++R L + +IGR+ K K+ L DY Sbjct: 189 NFLTTMKGDALISMLYHKPVKTDEWELEAEKMRQRL-----GVSIIGRSRKQKVVLGNDY 243 Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWV--------------LAATKGIQGD 212 V E + V GR L Y+Q+E FTQPNAGI+ MLEW AA D Sbjct: 244 VMEEIEVDGRVLTYKQLEGGFTQPNAGISAKMLEWARSAAVSDSADAVGEAAAPARRNDD 303 Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 LLELYCGNGNF++ +A F VLA E++K SV AA+ N AN NV R+SS+E T A Sbjct: 304 LLELYCGNGNFTIAMAPMFRAVLATEVSKVSVAAAKLNADANGAGNVAFARLSSEELTLA 363 Query: 273 MRREREFNRLKDID-IHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYISCNPDSLCRD 331 + + ++F RL D+ + SY +T+ VDPPR+G+ + V + I+YISCNP++L D Sbjct: 364 LDQGKQFARLDDVPPLESYDLRTVLVDPPRAGMGEEVSTFVSRFDRIVYISCNPETLAAD 423 Query: 332 LSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 + L TH + R A FDQFPYT H+ECG LL+ K Sbjct: 424 VRTLRDTHEVARFAAFDQFPYTPHLECGALLIAK 457 >gi|34558377|ref|NP_908192.1| tRNA (uracil-5-)-methyltransferase [Wolinella succinogenes DSM 1740] gi|81653300|sp|Q7M7T6|TRMA_WOLSU RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|34484096|emb|CAE11092.1| TRNA (URACIL-5-)-METHYLTRANSFERASE [Wolinella succinogenes] Length = 370 Score = 326 bits (837), Expect = 3e-87, Method: Composition-based stats. Identities = 137/365 (37%), Positives = 213/365 (58%), Gaps = 6/365 (1%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWH-DGDDLYH 60 G L YE+Q K R+++ + ++ S P +R RAEF ++ + L + Sbjct: 10 GGCALALPYEEQWKLKESEFRELLPLSKDTPTDLYPSAPHSFRARAEFRLYRNESGRLSY 69 Query: 61 IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVT 120 M + +K+ + I I ALM ++ + + +L KLF +++L+ S + +V+ Sbjct: 70 AMSQKGSKQPLPIQSCPILLPSIQALMPSLLEALESDEILTQKLFGVEFLSGLSQEVLVS 129 Query: 121 LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIY 180 L+YH+ LD AW E R L + LIGR+ KI L ++ E LT+ + + Sbjct: 130 LLYHKRLDHAWEE---RALGLLSSLPTLSSLIGRSKGQKIVLGESFITETLTIDSKPWRF 186 Query: 181 RQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240 E SFTQPN +N M+EW+++A QGDLLELYCG GNF+L L+ + ++LA E++ Sbjct: 187 LHYEGSFTQPNPKVNEKMIEWIISA--PPQGDLLELYCGAGNFTLPLSSRYAKILATEVS 244 Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300 K S+ AA+ N N V ++ VR++++E A+ EREF RL+++D+ SY F+ +FVDPP Sbjct: 245 KTSIHAAKQNCELNSVRHISFVRLNAQETQSALEGEREFYRLRELDLPSYDFQAVFVDPP 304 Query: 301 RSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360 R+GL ++ + ILYISCNP +L DL +L +H +ER ALFDQFPYT H+E GV Sbjct: 305 RAGLGAEVASFLRRFDQILYISCNPKTLQSDLEVLQLSHDVERFALFDQFPYTPHLESGV 364 Query: 361 LLVRK 365 +L ++ Sbjct: 365 ILRQR 369 >gi|327483052|gb|AEA77459.1| tRNA (Uracil54-C5-)-methyltransferase [Vibrio cholerae LMA3894-4] Length = 282 Score = 325 bits (832), Expect = 9e-87, Method: Composition-based stats. Identities = 161/282 (57%), Positives = 209/282 (74%), Gaps = 2/282 (0%) Query: 87 MIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARK 146 M +M ++ P+LR KLFQ+D+L++ S + +V+L+YHR L + W A L+ L+ Sbjct: 1 MPLLMDAMKGSPILRHKLFQVDFLSTLSGEILVSLLYHRQLSEEWITAAQALKQRLNDEG 60 Query: 147 YQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAAT 206 + + LIGRA K K+ LDRDYV E+L V G+ +Y+Q+EN FTQPNA + MLEW + T Sbjct: 61 FNLNLIGRARKMKVVLDRDYVVEKLQVNGQPYVYKQVENCFTQPNAKVAEKMLEWAVDCT 120 Query: 207 KGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266 + +GDLLELYCGNGNFSL LA++F+RVLA E+AKPSVEAA++NIAAN + NV+I+RMS+ Sbjct: 121 QESKGDLLELYCGNGNFSLALAQNFERVLATELAKPSVEAAQFNIAANQIGNVQIIRMSA 180 Query: 267 KEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYISCN 324 +EFTQAM +REFNRLKD +D+ SYR TIFVDPPRSG+D T MVQ Y ILYISCN Sbjct: 181 EEFTQAMEGKREFNRLKDAGVDLQSYRCNTIFVDPPRSGMDIDTCKMVQGYERILYISCN 240 Query: 325 PDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRKP 366 P++L +L +L TH + R ALFDQFPYT HME GV+L RK Sbjct: 241 PETLQENLQVLGETHQVVRFALFDQFPYTHHMEAGVMLERKK 282 >gi|161870527|ref|YP_001599699.1| tRNA (uracil-5-)-methyltransferase [Neisseria meningitidis 053442] gi|161596080|gb|ABX73740.1| tRNA (uracil-5-)-methyltransferase [Neisseria meningitidis 053442] Length = 316 Score = 322 bits (826), Expect = 5e-86, Method: Composition-based stats. Identities = 150/318 (47%), Positives = 210/318 (66%), Gaps = 11/318 (3%) Query: 58 LYHIMFDQQTK----ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQ 113 +++ MF++ K +R D F S +N LM E++A LR + + +++L++ Sbjct: 1 MFYAMFEKGQKAGGASLIRCDRFEAASEAVNRLMPELIAVAAQSAELRNRWYAVEFLSTL 60 Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTV 173 S + +VT+IYH+ LD+ W + A ++ I +IGR+ KI L +DYV E L V Sbjct: 61 SGEMLVTMIYHKRLDNEWMQAAQA-----LQQQLDISVIGRSRGQKIVLKQDYVTETLKV 115 Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDR 233 R YRQIE SFTQPNA + MLEW A +G+ GDLLELYCGNGNF+L L+ F+R Sbjct: 116 GNRDFRYRQIEGSFTQPNAAVCQKMLEWACGAAEGLDGDLLELYCGNGNFTLPLSEKFER 175 Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYR 291 VLA EI+K SV AA++NI AN + N+KI R+S++EFT+A +REF RLKD I + Y Sbjct: 176 VLATEISKTSVSAAQWNIEANRIGNIKIARLSAEEFTEAYTGKREFKRLKDGGIALTDYA 235 Query: 292 FKTIFVDPPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFP 351 F TIFVDPPR+G+D+ T+ +V + +I+YISCNP++L +L L+ THT+ER ALFDQFP Sbjct: 236 FSTIFVDPPRAGIDEETLKLVSQFDNIIYISCNPETLRTNLDTLAETHTVERAALFDQFP 295 Query: 352 YTRHMECGVLLVRKPSGW 369 +T H+E GVLL +K G Sbjct: 296 FTHHIESGVLLKKKILGK 313 >gi|255322717|ref|ZP_05363861.1| tRNA (uracil-5-)-methyltransferase [Campylobacter showae RM3277] gi|255300278|gb|EET79551.1| tRNA (uracil-5-)-methyltransferase [Campylobacter showae RM3277] Length = 377 Score = 322 bits (825), Expect = 5e-86, Method: Composition-based stats. Identities = 138/370 (37%), Positives = 207/370 (55%), Gaps = 9/370 (2%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHD----GDD 57 L YE+Q+ K D +R+ F + F S+ YR RAEF IWHD D Sbjct: 13 GSCTLDMPYEEQVKFKTDFIRREFEPFYSGEFEFFASQSAAYRTRAEFGIWHDIWHSAVD 72 Query: 58 LYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQA 117 L + M +TK R+ ID + I LM ++ + +L+ +LF ++++ S Sbjct: 73 LAYTMHGAKTK-RIMIDECPKVAAPIANLMPRLLEALAKNQILKERLFGAEFISCASG-I 130 Query: 118 IVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRT 177 + TL+YH+ L +A + L AL ++ + RA K+ + + L + G+ Sbjct: 131 LATLLYHKRLGEAEQSEIESL--ALKFADLRVTIAARAKGQKLLSGELNLQDSLNIGGKI 188 Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAV 237 + + +F QPN +N M+ W DLLELYCG+GNF++ ++ F RVLA Sbjct: 189 YKFTFGDGAFIQPNTAVNEKMIAWA-KRCVERGADLLELYCGHGNFTVPMSEKFKRVLAT 247 Query: 238 EIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFV 297 EI+K S+ A N N VNN++ +RMS++E A RREREFNRL+++DI SY F + V Sbjct: 248 EISKSSIANALKNCELNGVNNIEFLRMSAEELMSAFRREREFNRLRELDIFSYDFSHVLV 307 Query: 298 DPPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHME 357 DPPR+GLD++ + ++ Y +I+YISC+P SL RDL+ L+ TH + A+FDQF T H+E Sbjct: 308 DPPRAGLDESVINFIKNYENIIYISCSPQSLKRDLTQLAATHEAVKFAVFDQFANTTHIE 367 Query: 358 CGVLLVRKPS 367 CGVLL K + Sbjct: 368 CGVLLKGKNA 377 >gi|223041073|ref|ZP_03611330.1| tRNA (uracil-5-)-methyltransferase [Campylobacter rectus RM3267] gi|222877686|gb|EEF12810.1| tRNA (uracil-5-)-methyltransferase [Campylobacter rectus RM3267] Length = 374 Score = 321 bits (822), Expect = 1e-85, Method: Composition-based stats. Identities = 133/366 (36%), Positives = 201/366 (54%), Gaps = 5/366 (1%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHI 61 L YE+Q+ K +R+ F + F S+ YR RAEF IW +G++L + Sbjct: 13 GSCTLDAPYEEQVEFKKGFIRREFEPFYSGEFEFFASQKAGYRTRAEFGIWREGEELSYT 72 Query: 62 MFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTL 121 M + K R+ ID + I LM ++ + +L+ KLF ++++ S + TL Sbjct: 73 MHGAKAK-RVFIDECPKVAAPIANLMPRLLGALVKNQILKEKLFGAEFISCASG-ILATL 130 Query: 122 IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYR 181 +YH+ L A + L +++ + RA K+ + +RL + + + Sbjct: 131 LYHKHLGKAEQGEIESLAREF--VGHRVTIAARAKGQKLLSGELNLQDRLNIGDKIYKFT 188 Query: 182 QIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241 + +F QPN +N M+ W DLLELYCG+GNF++ +A F RVLA EI+K Sbjct: 189 FGDGAFIQPNTAVNEKMIAWA-KGCVERGADLLELYCGHGNFTVAMAEKFKRVLATEISK 247 Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301 S+ A N N VNN+K +RMS++E A REREFNRL+++DI SY F + VDPPR Sbjct: 248 SSIANALKNCELNGVNNIKFLRMSAEELISAFGREREFNRLRELDIFSYDFSHVLVDPPR 307 Query: 302 SGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVL 361 +GLD + + ++ Y +I+YISC+P SL RD++ L TH + A+FDQF T H+ECGVL Sbjct: 308 AGLDASVINFIKNYENIVYISCSPQSLKRDMAQLDATHEAVKFAVFDQFANTAHIECGVL 367 Query: 362 LVRKPS 367 L K + Sbjct: 368 LRSKNA 373 >gi|150391752|ref|YP_001321801.1| RNA methyltransferase [Alkaliphilus metalliredigens QYMF] gi|149951614|gb|ABR50142.1| RNA methyltransferase, TrmA family [Alkaliphilus metalliredigens QYMF] Length = 452 Score = 318 bits (814), Expect = 1e-84, Method: Composition-based stats. Identities = 83/386 (21%), Positives = 160/386 (41%), Gaps = 39/386 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWHDGDD 57 ++ Y+ QL K R+ + + + P YR +A+F I Sbjct: 80 GCQIMHMDYKGQLEMKRKRVEETLARIGKIETTVHATLGMDNPYEYRNKAQFPIGVMDGK 139 Query: 58 LYHIMFDQQTKERMRIDYFMPGSLL-----------INALMIEMMATIRLEPLLRAKLFQ 106 + + + E + +Y S + I++ + + + LLR + + Sbjct: 140 AILGFYKKGSHEIVDTEYCHIQSPINETIAKVMKHYIDSFGVTVYDEKKRVGLLRHVITK 199 Query: 107 IDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162 + + T + ++T L + + L D E L+ H + + +KTK Sbjct: 200 VGFTTGEVMVVLITNGKQLPHKKELIDLLIEGVKGLKTVAHNINEKNTNVIFGSKTKTLH 259 Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNG 221 Y+ + + L + SF Q N + E L A + ++L++YCG G Sbjct: 260 GEGYITDYIG----DLKFNISPQSFFQVNPMQTKALYEKALEYANLTGEENVLDIYCGIG 315 Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281 SL LA+ +V VE+ + ++E A++N N++NN + ++E + +E Sbjct: 316 TISLFLAQKAKKVYGVEVVEAAIEDAKHNAKINNLNNAEFHVGKAEEVVPQLYKE----- 370 Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST-T 338 R + + VDPPR G +++ + + ++Y+SCNP +L RDL+ L Sbjct: 371 -------GIRTEVVVVDPPRKGCEESVLETIVNMEPKRVVYVSCNPATLARDLAYLEEHG 423 Query: 339 HTIERLALFDQFPYTRHMECGVLLVR 364 + + + D FP++ H+E VL+ R Sbjct: 424 YKTQEVQPVDMFPHSSHVETVVLMSR 449 >gi|213051818|ref|ZP_03344696.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] Length = 262 Score = 317 bits (812), Expect = 2e-84, Method: Composition-based stats. Identities = 168/257 (65%), Positives = 201/257 (78%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L +QYE QLAEKV RL+ MM F ++FRS HYRMRAEF +WHDGD+LYHIMFD Sbjct: 6 LPTEQYEAQLAEKVARLQSMMAPFSGLVPEVFRSPVSHYRMRAEFRLWHDGDNLYHIMFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTK R+R+D F S LIN LM M+A +R LR KLFQIDYLT+ S+QA+V+L+YH Sbjct: 66 QQTKSRIRVDTFPAASQLINTLMKAMIAGVRDNHALRHKLFQIDYLTTLSNQAVVSLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + LD+ WRE A LRDAL A+ + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E Sbjct: 126 KKLDEEWREAATALRDALRAQGLNVHLIGRATKTKIELDQDYIDERLPVAGKEIIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 NSFTQPNA +N+ MLEW L TK +GDLLELYCGNGNFSL LAR+F+RVLA EIAKPSV Sbjct: 186 NSFTQPNAAMNIQMLEWALEVTKDSKGDLLELYCGNGNFSLALARNFNRVLATEIAKPSV 245 Query: 245 EAARYNIAANHVNNVKI 261 AA+YNIAANH++NV+I Sbjct: 246 AAAQYNIAANHIDNVQI 262 >gi|242310595|ref|ZP_04809750.1| tRNA (uracil-5-)-methyltransferase [Helicobacter pullorum MIT 98-5489] gi|239522993|gb|EEQ62859.1| tRNA (uracil-5-)-methyltransferase [Helicobacter pullorum MIT 98-5489] Length = 369 Score = 316 bits (809), Expect = 4e-84, Method: Composition-based stats. Identities = 133/365 (36%), Positives = 214/365 (58%), Gaps = 9/365 (2%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHI 61 G +++Y L K+ R M+ N ++F S+ + +R R E I+H + + + Sbjct: 10 GGCSALEEYS--LESKIARASAML---GFQNFEVFGSQEVSFRARCELGIYHKENKIIYT 64 Query: 62 MFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLE--PLLRAKLFQIDYLTSQSDQAIV 119 M ++ ++ + I + A + + + + R KLF I+ L++Q D ++ Sbjct: 65 M--RKGRQFVPIQNCPILVDNLQAFLQVLKEVLNDDFFGDFREKLFAIEALSTQMDTILL 122 Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179 TLIYH+ L+D W E A ++ L R +++++GR+ KI +D+D+V E L V + Sbjct: 123 TLIYHKKLNDKWLEIARVFKEVLEKRGIKLEVVGRSRGVKIVVDKDFVIEELKVGKKGYF 182 Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEI 239 YR E +F+QPN +N ML+W + + K DLLE+YCG GNF++ + F +VLA EI Sbjct: 183 YRYDEGAFSQPNPKVNEKMLKWAMDSLKRSDEDLLEMYCGCGNFTIPFSEKFRKVLATEI 242 Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299 +K S+ AA++ N NN+K VR++++E +A+ REF RL+ I + Y F ++FVDP Sbjct: 243 SKTSIRAAKFACEKNQRNNIKFVRLNAQECIEALEGVREFRRLEGIRLQDYCFSSVFVDP 302 Query: 300 PRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359 PR+GL + +Q + +ILYISCNP +L +DL IL TH I ++A FDQFP+T H+E G Sbjct: 303 PRAGLGEEVSRFLQRFQNILYISCNPSTLAKDLEILKQTHKISKVAFFDQFPHTPHLESG 362 Query: 360 VLLVR 364 VLL + Sbjct: 363 VLLHK 367 >gi|323144069|ref|ZP_08078712.1| tRNA (uracil-5-)-methyltransferase [Succinatimonas hippei YIT 12066] gi|322416145|gb|EFY06836.1| tRNA (uracil-5-)-methyltransferase [Succinatimonas hippei YIT 12066] Length = 378 Score = 313 bits (802), Expect = 3e-83, Method: Composition-based stats. Identities = 155/371 (41%), Positives = 225/371 (60%), Gaps = 9/371 (2%) Query: 4 TLLIDQYEQQLAEKVDRLRQMML--AFQVPNLQIFRSEPIHYRMRAEFHIWH-DGDDLYH 60 T Y+ L EK D + ++ +P QIF S P +YRMRAEF I+H + + Sbjct: 8 TTDPHNYQNYLNEKTDHVLNLLKAKGITLPPPQIFPSIPSNYRMRAEFAIFHTETTGFEY 67 Query: 61 IMFDQ--QTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAI 118 M+D+ K+R+ I+YF SL IN M + + ++ +LF+ D+L + I Sbjct: 68 CMYDKEGGKKKRVFINYFDGVSLAINKAMSLLKEYALTDLQIKNRLFEADFLCNLQGDVI 127 Query: 119 VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTL 178 +TL YH+ LD+A+ +LR LH + +++ RA K KI D + E L V G+ + Sbjct: 128 ITLNYHKKLDEAFAASLEKLRSFLHEKSLNAEIVARARKQKITCKDDTLLECLKVNGKNV 187 Query: 179 IYRQIENSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHFDRVLAV 237 QIE +FTQPNA MLE+ L ++ +Q DLLELYCG+G F+ LA + +VLA Sbjct: 188 YLYQIEGTFTQPNAVTCEKMLEFALNCSEDMQNTDLLELYCGSGTFTATLAPCYRKVLAT 247 Query: 238 EIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL--KDIDIHSYRFKTI 295 E+A+ + A N+ N+++NVK+VR+S+ E TQA+ RER FNRL KD+D++ Y FKT+ Sbjct: 248 EVARVPTQNALRNLEKNNIDNVKLVRLSAVEVTQALNRERTFNRLQQKDVDLNEYDFKTL 307 Query: 296 FVDPPRSGL-DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTR 354 +DPPR+GL D+A + + ++YISC P+S DL L+ TH IE+LA FDQFPYTR Sbjct: 308 LIDPPRAGLQDEAALKFTARFDRVIYISCGPESFASDLQFLTKTHRIEKLAFFDQFPYTR 367 Query: 355 HMECGVLLVRK 365 H+E G LLVR+ Sbjct: 368 HLESGALLVRR 378 >gi|303286133|ref|XP_003062356.1| predicted protein [Micromonas pusilla CCMP1545] gi|226455873|gb|EEH53175.1| predicted protein [Micromonas pusilla CCMP1545] Length = 469 Score = 311 bits (796), Expect = 2e-82, Method: Composition-based stats. Identities = 151/408 (37%), Positives = 217/408 (53%), Gaps = 53/408 (12%) Query: 7 IDQYEQQLAEKVDRLRQMM------------------LAFQVP---NLQIFRSEPIH-YR 44 + Y +L K+ R VP +++F S H +R Sbjct: 67 PETYRAELDVKIADARACFDASPERDDGAGGGKPIEAAKIAVPLPDEIEVFESPKKHHFR 126 Query: 45 MRAEFHIWHDGDDLYHIMFDQQT-KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAK 103 MRAEF +WH GD + MFD + K + I+ F GS IN+LM E++ I+ EP LR K Sbjct: 127 MRAEFRVWHAGDKSFMAMFDNEDPKTPVEIETFPMGSERINSLMKEVLREIKDEPALRRK 186 Query: 104 LFQIDYLTSQ-SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTK--- 159 LFQ+++LT+ +D A+V+++YHR LD AW A R + ++ +IGR+ K K Sbjct: 187 LFQVNFLTTSGTDDALVSMLYHRPLDAAWEAAAEEARQRM-----KVSVIGRSRKQKARL 241 Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL---------------- 203 I L +V E LTV G Y+Q+E FTQPN+G MLEW Sbjct: 242 IVLGNPFVMETLTVDGEKFTYKQLEGGFTQPNSGTCEKMLEWARDVSVDDARAPGSGSGP 301 Query: 204 --AATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261 A + D LELYCGNGNF++ LA + VLA E++K SV AA N N N K+ Sbjct: 302 AGARPRRRDDDFLELYCGNGNFTVALAPLYLNVLATEMSKVSVAAAVENFETNGTTNAKV 361 Query: 262 VRMSSKEFTQAMRREREFNRLKDI---DIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHI 318 VR+S++E + +++ R+ + D+ +Y +T+ VDPPR+G+ + + I Sbjct: 362 VRLSAEELVLVLDSGKKYERMTNAGLDDLSAYDLRTLLVDPPRAGMGEEVSKFASRFDRI 421 Query: 319 LYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRKP 366 +YISCNP +L D IL+ TH I+R A+FDQFPYT H+E G LLV++ Sbjct: 422 IYISCNPKTLAEDCRILAETHEIKRFAVFDQFPYTPHLESGALLVKRK 469 >gi|88705120|ref|ZP_01102832.1| tRNA (Uracil-5-)-methyltransferase [Congregibacter litoralis KT71] gi|88700815|gb|EAQ97922.1| tRNA (Uracil-5-)-methyltransferase [Congregibacter litoralis KT71] Length = 373 Score = 310 bits (795), Expect = 2e-82, Method: Composition-based stats. Identities = 153/355 (43%), Positives = 218/355 (61%), Gaps = 8/355 (2%) Query: 7 IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66 + Y A+K + + ML ++P + F S YR+RAEF IWHDGDD+ ++MFD Sbjct: 8 PENYATLFAKKCSDVEKDMLTLRLPPAERFASPVESYRVRAEFRIWHDGDDIDYVMFDPG 67 Query: 67 T-KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHR 125 + + I F P I LM +++A ++ P+LR KLFQ +++ + + + ++TLIYHR Sbjct: 68 HPRTPVVIKDFAPALAPIRTLMPQLLAFLKSRPVLRRKLFQAEFMATTTGELLLTLIYHR 127 Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIEN 185 LDDAW + A L AR++ + L+GR+ K K + RD+V + TV GR YRQ E Sbjct: 128 PLDDAWEDEARAL-----AREFDVSLVGRSRKQKRIIGRDFVVDAFTVDGRCYRYRQYEQ 182 Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 SF QPNA IN ML W GDLLELYCGNGNF+L LA F V+A E++K Sbjct: 183 SFVQPNAPINEAMLTWAWQQGASCPGDLLELYCGNGNFTLPLASRFPAVIATELSKSGTR 242 Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI--DIHSYRFKTIFVDPPRSG 303 AA NI N V+NV+++R+S++E ++AM REF RL + + Y +T+FVDPPR+G Sbjct: 243 AALENIRDNGVDNVQVIRLSAEEVSEAMSGVREFRRLATLPKPLGDYDLRTVFVDPPRAG 302 Query: 304 LDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMEC 358 LD T+ V+ + ILY+SCNP +L ++ L+ +H + ALFDQFPYT H+E Sbjct: 303 LDPGTLDCVRDFEAILYVSCNPKTLKSNIEALTDSHVVTHYALFDQFPYTPHIES 357 >gi|154175098|ref|YP_001408132.1| tRNA (uracil-5-)-methyltransferase [Campylobacter curvus 525.92] gi|262827638|sp|A7GY40|TRMA_CAMC5 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|112803124|gb|EAU00468.1| tRNA (uracil-5-)-methyltransferase [Campylobacter curvus 525.92] Length = 364 Score = 310 bits (794), Expect = 2e-82, Method: Composition-based stats. Identities = 125/366 (34%), Positives = 205/366 (56%), Gaps = 13/366 (3%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHI 61 L YE QL K + + F L+IF S+P YR RAEF IWH+ D++Y+ Sbjct: 10 GSCTLALPYEDQLNFKANFIADKFREFFDGELEIFSSKPQRYRSRAEFGIWHENDEIYYT 69 Query: 62 MFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTL 121 M ++K ++I + I ALM ++ + L++K+F ++++++ A++ L Sbjct: 70 MHGSRSKF-IKISECLKVDESIAALMPRLLEELGTSNELKSKIFGVEFISTSELCAVILL 128 Query: 122 IYHRL--LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179 + RL L+ A+ E A RL ++++ R+ KI D + + + G Sbjct: 129 YHKRLEGLEAAFSELAKRL---------GVKIVARSRGQKISSDERELCDSFEINGLRYA 179 Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEI 239 +++F QPN +N M+ W + A + + D+LE+YCG+GNF++ LA F RVLA EI Sbjct: 180 LNFGDSAFIQPNKCVNEKMISWAMNAVQNAE-DMLEMYCGHGNFTIPLAGKFRRVLATEI 238 Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299 +K S+ A N N + N+K +RMS++E A ER F RL+ +++ + F + VDP Sbjct: 239 SKSSIANALKNCERNGIGNIKFLRMSAEELMSAFSGERGFRRLEGVNLADFTFSHVLVDP 298 Query: 300 PRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359 PR+GL+ + + ++ Y +I+YISCNP +L +L LS TH + A+FDQF T H+ECG Sbjct: 299 PRAGLEASVINFIKNYENIVYISCNPQTLYENLKELSLTHKATKFAMFDQFANTNHIECG 358 Query: 360 VLLVRK 365 V+L ++ Sbjct: 359 VVLKKR 364 >gi|253827633|ref|ZP_04870518.1| tRNA (uracil-5-)-methyltransferase [Helicobacter canadensis MIT 98-5491] gi|253511039|gb|EES89698.1| tRNA (uracil-5-)-methyltransferase [Helicobacter canadensis MIT 98-5491] Length = 370 Score = 309 bits (792), Expect = 4e-82, Method: Composition-based stats. Identities = 140/368 (38%), Positives = 217/368 (58%), Gaps = 11/368 (2%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHI 61 G +++ E L KVD +Q++ + I +R R E I+ D + + Sbjct: 10 GGCSILE--ECSLESKVDYAKQLL---GINQCDIVSLRQDSFRARCELGIFFKDDKINYA 64 Query: 62 MFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLE--PLLRAKLFQIDYLTSQSDQAIV 119 M ++ K+ + I+ + + + + E R KLF I+ L++Q+D+ ++ Sbjct: 65 M--RKGKQFVCIENCCNLLESLQKFLPVLKKKLNQEFFKDFRQKLFAIEVLSTQNDEILL 122 Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179 TLIYH+ L++ W E A L+ AL +++++++IGR+ K+ +++DYV E+L + G+ Sbjct: 123 TLIYHKKLNETWLENAKELKKAL--QEFRVEIIGRSKGVKLIVEKDYVVEKLEIDGKKYY 180 Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEI 239 YR E +FTQPN IN M+EWVL +GDLLE+YCG GNF++ L++ F +VLA EI Sbjct: 181 YRYDEGAFTQPNPKINEKMIEWVLQNISQSKGDLLEMYCGCGNFTIPLSQKFRKVLATEI 240 Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299 +K S+ AA++ N NN+ VR+S +E +A+ R+FNRL+ I++ Y F I VDP Sbjct: 241 SKVSIRAAKFACQRNGCNNITFVRLSGQECIEAIEGIRKFNRLEQINLEEYDFSMILVDP 300 Query: 300 PRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359 PR GL + +Q + ILYISCNP SL +DL ILS TH I + A FDQFP+T H+E G Sbjct: 301 PRGGLGEEVCRFLQNFSSILYISCNPLSLAKDLKILSQTHRIVKAAFFDQFPHTSHLETG 360 Query: 360 VLLVRKPS 367 +LL + S Sbjct: 361 ILLQKVDS 368 >gi|15613250|ref|NP_241553.1| RNA methyltransferase [Bacillus halodurans C-125] gi|50401684|sp|Q9KF10|Y687_BACHD RecName: Full=Uncharacterized RNA methyltransferase BH0687 gi|10173301|dbj|BAB04406.1| RNA methyltransferase [Bacillus halodurans C-125] Length = 458 Score = 307 bits (787), Expect = 2e-81, Method: Composition-based stats. Identities = 78/389 (20%), Positives = 144/389 (37%), Gaps = 40/389 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56 L Y+ QL K +++ ++ I +EP YR +A+ + Sbjct: 86 GCQLQHMSYDAQLRYKQKQVQDVLERIGKITAVTVRPTIGMNEPWRYRNKAQVPVGEREG 145 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLF 105 L + +++ + +D M L L I + LR + Sbjct: 146 GLIAGFYQERSHRIIDMDECMIQHEENDKVIRQVKELARELGIRGYDEEKHRGTLRHVVA 205 Query: 106 QIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161 + T + ++T L + + L + + ++ + + + +KTK+ Sbjct: 206 RYGKNTGEIMVVLITRGEELPHKKTLIERIHKAIPHVKSIVQNVNPKRTNVIFGDKTKVL 265 Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220 +Y+ + + + + SF Q N + + L A +++ YCG Sbjct: 266 WGEEYIYDTIG----DIKFAISARSFYQVNPEQTKVLYDQALEFANLTGSETVIDAYCGI 321 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G SL LA+ V VEI ++ A+ N N NV+ +++ Sbjct: 322 GTISLFLAQQAKHVYGVEIVPEAISDAKRNARLNGFANVQFAVGDAEKVMPWWYA----- 376 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILS-T 337 R I VDPPR G D+A + + ++Y+SCNP +L RDL +L Sbjct: 377 -------QGVRADVIVVDPPRKGCDEALLKTILNMKPDRVVYVSCNPATLARDLRVLEDG 429 Query: 338 THTIERLALFDQFPYTRHMECGVLLVRKP 366 + + + D FP+T H+E +L K Sbjct: 430 GYETKDVQPVDMFPWTTHIESVAVLELKN 458 >gi|118475420|ref|YP_892144.1| tRNA (uracil-5-)-methyltransferase [Campylobacter fetus subsp. fetus 82-40] gi|134035055|sp|A0RPL1|TRMA_CAMFF RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|118414646|gb|ABK83066.1| tRNA (uracil-5-)-methyltransferase [Campylobacter fetus subsp. fetus 82-40] Length = 367 Score = 307 bits (786), Expect = 2e-81, Method: Composition-based stats. Identities = 124/363 (34%), Positives = 210/363 (57%), Gaps = 9/363 (2%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHI 61 L Y +Q+ K + +++ F + FRS +R RAEF ++HD + L + Sbjct: 13 GSCTLDMPYSEQIDFKKNFIKEHFKDFHNGEIIFFRSPISKFRSRAEFGLYHDDNSLSYT 72 Query: 62 MFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTL 121 M ++ID I+ +M ++ ++ L+AKLF ++++T++ D+ ++ L Sbjct: 73 MRRADG-GYLKIDKCSIVDEKISVIMPVLLDLLKENQNLKAKLFGVEFITTR-DEILIIL 130 Query: 122 IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYR 181 +YH+ +E K ++ LI R+ K+ ++E+L + G++ Y Sbjct: 131 LYHKDASTIIQELTW------LQSKLKVGLIARSKGKKLVFGSSSLNEKLFINGKSYHYV 184 Query: 182 QIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241 + +F QPN IN +M+ WVL T + DLLELYCG+GNF++ L+ F++VLA EI+K Sbjct: 185 FGDAAFIQPNRNINENMISWVLDHTTDCK-DLLELYCGHGNFTIPLSFKFNKVLATEISK 243 Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301 S+ +A N N V+N+K R+S++E +A +R+F RL+DID+ SY F I VDPPR Sbjct: 244 ASINSALKNCELNGVDNIKFTRLSAEELMEAFLFKRDFRRLQDIDLRSYEFSHILVDPPR 303 Query: 302 SGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVL 361 +G D + + ++ Y +I+YISCNP +L +L +L TH++++ A+FDQF +T H+EC V+ Sbjct: 304 AGCDKSVLDFIRNYENIIYISCNPLTLKENLKLLCKTHSVDKFAIFDQFVHTNHIECAVV 363 Query: 362 LVR 364 L + Sbjct: 364 LKK 366 >gi|213417764|ref|ZP_03350880.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 239 Score = 306 bits (784), Expect = 3e-81, Method: Composition-based stats. Identities = 165/237 (69%), Positives = 196/237 (82%) Query: 127 LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS 186 +D+ WRE A LRDAL A+ + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+ENS Sbjct: 1 MDEEWREAATALRDALRAQGLNVHLIGRATKTKIELDQDYIDERLPVAGKEIIYRQVENS 60 Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246 FTQPNA +N+ MLEW L TK +GDLLELYCGNGNFSL LAR+F+RVLA EIAKPSV A Sbjct: 61 FTQPNAAMNIQMLEWALEVTKDSKGDLLELYCGNGNFSLALARNFNRVLATEIAKPSVAA 120 Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306 A+YNIAANH++NV+I+RM+++EFTQAM REFNRL+ ID+ Y+ +TIFVDPPRSGLD Sbjct: 121 AQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKRYQCETIFVDPPRSGLDS 180 Query: 307 ATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363 T MVQAYP ILYISCNP++LC++L LS THT+ RLALFDQFPYT HMECGVLL Sbjct: 181 ETEKMVQAYPRILYISCNPETLCKNLETLSQTHTVSRLALFDQFPYTHHMECGVLLT 237 >gi|256003527|ref|ZP_05428517.1| RNA methyltransferase, TrmA family [Clostridium thermocellum DSM 2360] gi|281418309|ref|ZP_06249329.1| RNA methyltransferase, TrmA family [Clostridium thermocellum JW20] gi|255992551|gb|EEU02643.1| RNA methyltransferase, TrmA family [Clostridium thermocellum DSM 2360] gi|281409711|gb|EFB39969.1| RNA methyltransferase, TrmA family [Clostridium thermocellum JW20] gi|316941405|gb|ADU75439.1| RNA methyltransferase, TrmA family [Clostridium thermocellum DSM 1313] Length = 455 Score = 306 bits (783), Expect = 5e-81, Method: Composition-based stats. Identities = 83/386 (21%), Positives = 151/386 (39%), Gaps = 38/386 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56 +L YE L K + +R+ + V + + +P++YR +A++ I D Sbjct: 82 GCSLQHMNYEASLRFKTNVVRESIRRIGGLENVVVHDTVGMEQPVNYRNKAQYPIGRYKD 141 Query: 57 DLYHIMFDQQTKERMRIDYFMPGS-----------LLINALMIEMMATIRLEPLLRAKLF 105 + + +++ E + I I I E L+R + Sbjct: 142 GIRAGFYAKRSHEIIDCATCTIQHSVSDRVRAVVKEYIEKNNISTYDEITGEGLVRHIMT 201 Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD 165 ++ + ++ + +V L+ + + ++ RL + K + + I D + Sbjct: 202 RVGF---KTGEVMVVLVINGRNIPSQKKLVDRLVKEIPEIKSVVLNVNTKRTNVILGDEN 258 Query: 166 ---YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNG 221 Y + +T + SF Q N + L A + + +LYCG G Sbjct: 259 IVVYGRDTITDYIGEFKFNISPLSFFQVNPVQTEVLYRKALDYAQLTGKETVFDLYCGIG 318 Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281 SL L++ R+ VE+ + +V+ A N N V N + + +++ M Sbjct: 319 TISLFLSKKAKRIYGVEVVEAAVKDAWENAKVNGVENAEFIVGEAEKVIPEMYE------ 372 Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STT 338 R + VDPPR G D+A + + I+Y+SCNP +L RDL L Sbjct: 373 ------KGVRADVVVVDPPRKGCDEAVLKTLVDMKPERIVYVSCNPATLARDLKYLAEGG 426 Query: 339 HTIERLALFDQFPYTRHMECGVLLVR 364 + + D FP+T H+EC VL+ R Sbjct: 427 FEVREVQPVDMFPWTYHVECVVLMSR 452 >gi|153952276|ref|YP_001398252.1| tRNA (uracil-5-)-methyltransferase [Campylobacter jejuni subsp. doylei 269.97] gi|166988116|sp|A7H422|TRMA_CAMJD RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|152939722|gb|ABS44463.1| tRNA (uracil-5-)-methyltransferase [Campylobacter jejuni subsp. doylei 269.97] Length = 357 Score = 305 bits (782), Expect = 5e-81, Method: Composition-based stats. Identities = 134/352 (38%), Positives = 210/352 (59%), Gaps = 8/352 (2%) Query: 14 LAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRI 73 L EK +++ F + ++F S+ HYR RAE +H+ D L++ MFD ++K++ I Sbjct: 12 LDEKHSFIKKYFKEFYTKDFKLFTSKDKHYRTRAELSFYHENDTLFYAMFDPKSKKKYII 71 Query: 74 DYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRE 133 +Y I A M +++ +R + L+ KLF +++LT++ + ++ TL+YH+ ++D + Sbjct: 72 EYLDFADEKICAFMPKLLEYLRQDDKLKEKLFGVEFLTTKQELSL-TLLYHKNIED-IKS 129 Query: 134 CAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAG 193 L + LH I LI R+ K+ + + + L + GR + Y + F QPN Sbjct: 130 NLENLSNNLH-----INLIARSKGKKLIFKTENLRQTLNIQGREIFYEFNNDCFIQPNTT 184 Query: 194 INVHMLEWVLA-ATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIA 252 IN M+ WV + + DLLELYCG GNF+L LA+ F +VLA EI+K S+ A N Sbjct: 185 INEKMITWVCEILSIQKRMDLLELYCGYGNFTLALAQFFFKVLATEISKSSINFALKNCK 244 Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312 N+ N+ R+SS+E + A+++EREF RLKDI + + F + VDPPR+GLD + + ++ Sbjct: 245 LNNTTNIHFARLSSEELSLAIKKEREFFRLKDIRLDDFNFSHVLVDPPRAGLDKSVIDLI 304 Query: 313 QAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 + Y +I+YISCNP +L +L LS TH +E ALFDQF T H+ECGV L + Sbjct: 305 KKYENIIYISCNPITLKENLKELSLTHRVENFALFDQFVNTPHLECGVFLSK 356 >gi|56418877|ref|YP_146195.1| RNA methyltransferase [Geobacillus kaustophilus HTA426] gi|56378719|dbj|BAD74627.1| RNA methyltransferase [Geobacillus kaustophilus HTA426] Length = 457 Score = 305 bits (782), Expect = 6e-81, Method: Composition-based stats. Identities = 80/384 (20%), Positives = 146/384 (38%), Gaps = 40/384 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56 L YE QL K ++++++ + I P YR +A+ + Sbjct: 86 GCQLQHLSYEGQLKAKEKQVKEVLARIGKLDGVTVHPVIGMKNPWRYRNKAQVPVGEREG 145 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLF 105 L + +++ E + +D + ++ I + +LR + Sbjct: 146 GLVAGFYKERSHEIIDMDACLIQQEKNDDVVQAVKRIVERYGIPSYDELAHRGVLRHIVA 205 Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDAWRECAIR----LRDALHARKYQIQLIGRANKTKIC 161 + T + +VT H + +R ++ + + + KT++ Sbjct: 206 RYGAATGEVMVVLVTRTNHLPHEQEIVRSIVREIPDVKSIVQNVNPERTNVIFGAKTRVL 265 Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220 +++ +R+ + + SF Q N + + L A + +++ YCG Sbjct: 266 WGSEFITDRIG----GIQFAISARSFYQVNPEQTKVLYDKALEYAELTGRETVIDAYCGI 321 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G SL LAR V VEI ++E A+ N N + NV ++++ E Sbjct: 322 GTISLFLARKAKHVYGVEIVPEAIEDAKRNAELNGIQNVTFEVGAAEDVIPRWYEE---- 377 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILS-T 337 R + VDPPR G D A + + A P ++Y+SCNP +L RDL IL Sbjct: 378 --------GVRADCLVVDPPRKGCDAALLETIIAMKPPRVVYVSCNPATLARDLRILEDG 429 Query: 338 THTIERLALFDQFPYTRHMECGVL 361 + + D FP+T H+EC Sbjct: 430 GYETIEVQPVDMFPHTAHVECVAK 453 >gi|51893956|ref|YP_076647.1| RNA methyltransferase [Symbiobacterium thermophilum IAM 14863] gi|51857645|dbj|BAD41803.1| RNA methyltransferase [Symbiobacterium thermophilum IAM 14863] Length = 459 Score = 305 bits (782), Expect = 6e-81, Method: Composition-based stats. Identities = 86/388 (22%), Positives = 147/388 (37%), Gaps = 40/388 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56 L YE QL K ++ + + + ++P YR +A+F + Sbjct: 87 GCQLQHIAYEAQLGLKRQQVVDAVERLGRLSGVTVHPTLGMADPWGYRNKAQFPVGRRSG 146 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIE-----------MMATIRLEPLLRAKLF 105 + F + + I+ L N +M E + +LR L Sbjct: 147 RVIAGFFAPGSHRIVDIERCAIQHPLANRIMAEVKELAGRFGVPIYDERSHTGVLRHVLA 206 Query: 106 QIDYLTSQSDQAIVTLIYHRL-LDDAWRECAIRLRD---ALHARKYQIQLIGRANKTKIC 161 ++ T ++ +VT H D RE R+ + + + ++++ Sbjct: 207 RVGRGTGEAMAVLVTNGPHLPRGKDIARELMTRIPELVSVVQNINPARTNVVLGRESRVL 266 Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220 RD + + + L + SF Q N + + L A +++LYCG Sbjct: 267 AGRDAITDYIG----DLQFSISPVSFFQVNPAQTEVLYDKALEYAGLTGSETVIDLYCGI 322 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G SL LAR V+ +E + +V AR N A N + NV+ + + + E Sbjct: 323 GTISLFLARRCREVVGIEWVEEAVADARENAARNGIGNVRFIAGDAAVEMPRLAAE---- 378 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST- 337 R I +DPPR G D + + A ++Y+SCNP SL RDL L+ Sbjct: 379 --------GVRADVIVLDPPRKGCDGPVLEAIAQVAPRRVVYVSCNPASLARDLGRLAEM 430 Query: 338 THTIERLALFDQFPYTRHMECGVLLVRK 365 + + D FP+T H+EC + R+ Sbjct: 431 GYRTVEVQPVDMFPHTAHVECVARVERE 458 >gi|125974255|ref|YP_001038165.1| RNA methyltransferase [Clostridium thermocellum ATCC 27405] gi|125714480|gb|ABN52972.1| 23S rRNA m(5)U-1939 methyltransferase [Clostridium thermocellum ATCC 27405] Length = 453 Score = 305 bits (782), Expect = 7e-81, Method: Composition-based stats. Identities = 82/387 (21%), Positives = 151/387 (39%), Gaps = 38/387 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56 +L YE L K + +R+ + V + + +P++YR +A++ I D Sbjct: 82 GCSLQHMNYEASLRFKTNVVRESIRRIGGLENVVVHDTVGMEQPVNYRNKAQYPIGRYKD 141 Query: 57 DLYHIMFDQQTKERMRIDYFMPGS-----------LLINALMIEMMATIRLEPLLRAKLF 105 + + +++ E + I I I E L+R + Sbjct: 142 GIRAGFYAKRSHEIIDCATCTIQHSVSDRVRAVVKEYIEKNNISTYDEITGEGLVRHIMT 201 Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD 165 ++ + ++ + +V L+ + + ++ RL + K + + I D + Sbjct: 202 RVGF---KTGEVMVVLVINGRNIPSQKKLVDRLVKEIPEIKSVVLNVNTKRTNVILGDEN 258 Query: 166 ---YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNG 221 Y + +T + SF Q N + L A + + +LYCG G Sbjct: 259 IVVYGRDTITDYIGEFKFNISPLSFFQVNPVQTEVLYRKALDYAQLTGKETVFDLYCGIG 318 Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281 SL L++ R+ VE+ + +V+ A N N V N + + +++ M Sbjct: 319 TISLFLSKKAKRIYGVEVVEAAVKDAWENAKVNGVENAEFIVGEAEKVIPEMYE------ 372 Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STT 338 R + VDPPR G D+A + + I+Y+SCNP +L RDL L Sbjct: 373 ------KGVRADVVVVDPPRKGCDEAVLKTLVDMKPERIVYVSCNPATLARDLKYLAEGG 426 Query: 339 HTIERLALFDQFPYTRHMECGVLLVRK 365 + + D FP+T H+EC L+ +K Sbjct: 427 FEVREVQPVDMFPWTYHVECVALIEKK 453 >gi|326804241|ref|YP_004322059.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Aerococcus urinae ACS-120-V-Col10a] gi|326650795|gb|AEA00978.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Aerococcus urinae ACS-120-V-Col10a] Length = 459 Score = 305 bits (781), Expect = 8e-81, Method: Composition-based stats. Identities = 94/388 (24%), Positives = 155/388 (39%), Gaps = 42/388 (10%) Query: 3 GTLLIDQ--YEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFHIWHDG 55 GT+ + Y QLA K ++ + + I EP HYR +A+ I Sbjct: 87 GTMPLQHMAYPAQLAFKRQQVVNSLQKQGLLEKTQVLETIGMEEPWHYRNKAQIPIGQAD 146 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEP-----------LLRAKL 104 LY + + + + + + + I+ + +++A + P LLR + Sbjct: 147 GKLYTGFYRKGSHKLVPMTDYQIQLPGIDETLQKVLAILNQYPISAYDEDSHQGLLRHLI 206 Query: 105 FQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR 164 + Y T Q IV I + L + + A L+D L + + N T + + + Sbjct: 207 VRQGYYTGQVMLVIV--INGKKLPEEEKIVAT-LKDELPDLVSIVINSNQKN-TNVIMGQ 262 Query: 165 D----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCG 219 D Y ++ L +R SF Q N + L A +++ + YCG Sbjct: 263 DQRVVYGEDLYEDRMFDLTFRISSKSFFQVNTSQAEKLYHQALEAADLKGDEVVVDAYCG 322 Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279 G SL LA+ V VE+ ++ AR N N ++NV ++E Q Sbjct: 323 IGTISLCLAQAAKEVYGVEVVPDAINQARENAQLNGLDNVTFQAGKAEEVIQ-------- 374 Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSIL-S 336 D + + VDPPR GL + + V P I+Y+SCNP +L RDL+ Sbjct: 375 ----DWVQAGLKPDVVVVDPPRKGLAEDFIQSVLEVQPPKIVYVSCNPATLARDLAKFVD 430 Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVR 364 + + ++ D FP T H+E V L R Sbjct: 431 QGYQLGKVQPVDMFPQTHHVEAVVGLTR 458 >gi|312898459|ref|ZP_07757849.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Megasphaera micronuciformis F0359] gi|310620378|gb|EFQ03948.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Megasphaera micronuciformis F0359] Length = 460 Score = 304 bits (779), Expect = 1e-80, Method: Composition-based stats. Identities = 77/387 (19%), Positives = 150/387 (38%), Gaps = 40/387 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56 L YE QLAEK +++ + + +P YR + + + D Sbjct: 87 GCQLQHLSYEGQLAEKRQQVQDAVERIGKLKDVPVLPTLGADDPWAYRNKMQLPVGGDKR 146 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-----------LRAKLF 105 L+ F +++ + ID N ++ + ++ + +R + Sbjct: 147 SLHIGCFAEKSHRIIDIDACPIQKGGNNEIIPVVRQWMKEYKIPAYDEDKGTGMIRHIMG 206 Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR- 164 + + + IVT + + +E LR + IQ I + T + L Sbjct: 207 RTGVHSGEIMVCIVTAV---PMVPHMKELVQMLRKDVPGLTSVIQNIN-SRHTNVILGNK 262 Query: 165 ---DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220 Y ++ + L +R SF Q N+ + + L+ A ++++YCG Sbjct: 263 TKVIYGSPTISDSIGDLSFRISAQSFFQVNSEQAQKLYDTALSYADLKGNETVVDVYCGT 322 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G +L LA +EI +P++ A N N V N + + Sbjct: 323 GTITLFLAERAKFAYGIEIVEPAIRDAVKNARDNGVKNAHFMCGDAA------------Y 370 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILS-T 337 +L ++ + I +DPPR+G ++ + + + ++Y+SCNP +L RDL+ + Sbjct: 371 KLPELLRSGVKPDVIVIDPPRAGCEEKVLNAIASVRPKRVVYVSCNPATLARDLAYMKTR 430 Query: 338 THTIERLALFDQFPYTRHMECGVLLVR 364 + +++ D FP T H+E L+ R Sbjct: 431 GYETQKVQPVDMFPQTHHVETACLMSR 457 >gi|121613439|ref|YP_001000516.1| tRNA (uracil-5-)-methyltransferase [Campylobacter jejuni subsp. jejuni 81-176] gi|134035056|sp|A1VZH5|TRMA_CAMJJ RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|87249351|gb|EAQ72311.1| tRNA (uracil-5-)-methyltransferase [Campylobacter jejuni subsp. jejuni 81-176] Length = 357 Score = 304 bits (779), Expect = 1e-80, Method: Composition-based stats. Identities = 133/352 (37%), Positives = 207/352 (58%), Gaps = 8/352 (2%) Query: 14 LAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRI 73 L EK +++ F + ++F S+ HYR RAE +H+ D L++ MFD ++K++ I Sbjct: 12 LDEKHSFIKKYFKEFYTKDFKLFTSKDKHYRTRAELSFYHENDTLFYAMFDPKSKKKYII 71 Query: 74 DYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRE 133 +Y I A M +++ +R + L+ KLF +++LT++ + + VTL+YH+ ++D + Sbjct: 72 EYLDFADEKICAFMPKLLEYLRQDDKLKEKLFGVEFLTTKQELS-VTLLYHKNIED-IKS 129 Query: 134 CAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAG 193 L + LH I LI R+ K+ + + + L + R + Y + F QPN Sbjct: 130 NLENLSNNLH-----INLIARSKGKKLIFKTENLRQTLNIQDRKIFYEFNNDCFIQPNTA 184 Query: 194 INVHMLEWVLA-ATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIA 252 IN M+ WV + DLLELYCG GNF+L LA F +VLA EI+K ++ A N Sbjct: 185 INEKMITWVCEILNTQKRMDLLELYCGYGNFTLALAPFFFKVLATEISKSNINFALKNCE 244 Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312 N+ N+ R+SS+E + A+++EREF RLKDI + + F + VDPPR+GLD + + ++ Sbjct: 245 LNNTTNIHFARLSSEELSLAIKKEREFFRLKDIRLDDFNFSHVLVDPPRAGLDKSVIDLI 304 Query: 313 QAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 + Y +I+YISCNP +L +L LS TH +E ALFDQF T H+ECGV L + Sbjct: 305 KKYENIIYISCNPITLKENLKELSLTHRVEEFALFDQFVNTPHLECGVFLSK 356 >gi|239825905|ref|YP_002948529.1| RNA methyltransferase, TrmA family [Geobacillus sp. WCH70] gi|239806198|gb|ACS23263.1| RNA methyltransferase, TrmA family [Geobacillus sp. WCH70] Length = 459 Score = 304 bits (779), Expect = 1e-80, Method: Composition-based stats. Identities = 78/389 (20%), Positives = 149/389 (38%), Gaps = 40/389 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFHIWHDGD 56 L YE QL K ++++M I +P YR +A+ + Sbjct: 86 GCQLQHLSYEGQLRAKQKHVKEVMARIGKLENVIVHPVIGMKDPWRYRNKAQVPVGEREG 145 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLF 105 L + +++ E + +D + + + + + +LR + Sbjct: 146 GLVAGFYQERSHEIIDMDACLIQQEMNDVVVQTVKKICEKYKVPAYNEVTHKGVLRHIMA 205 Query: 106 QIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161 + +T + ++T L++ + + + ++ + + + ++TK+ Sbjct: 206 RYGAVTKEVMVVLITRTEELLHKKKIVQEIIDSVPNVKSIIQNINPKKTNVIMGDETKVL 265 Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220 +Y+ + + + + SF Q N + E L A + +++ YCG Sbjct: 266 WGAEYIYDYIG----DIKFAISARSFYQVNPEQTKVLYEKALEYAQLTGKETVIDAYCGI 321 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G SL LA+ +V VE+ ++E A+ N N + NV+ ++ Sbjct: 322 GTISLFLAKKAKKVYGVEVVPEAIEDAKRNAELNGITNVEFAIGEAEAVIPKWYE----- 376 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILS-T 337 R I VDPPR G D+ + + A ++Y+SCNP +L RDL IL Sbjct: 377 -------QGIRADCIVVDPPRKGCDETLLQTIIAMKPKRVVYVSCNPATLARDLRILEDG 429 Query: 338 THTIERLALFDQFPYTRHMECGVLLVRKP 366 + + D FP+T H+EC LV K Sbjct: 430 GYQTIEVQPVDMFPHTAHVECVSRLVLKN 458 >gi|260437712|ref|ZP_05791528.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Butyrivibrio crossotus DSM 2876] gi|292809735|gb|EFF68940.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Butyrivibrio crossotus DSM 2876] Length = 461 Score = 304 bits (778), Expect = 2e-80, Method: Composition-based stats. Identities = 92/388 (23%), Positives = 158/388 (40%), Gaps = 38/388 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQV-----PNLQIFRSEPIHYRMRAEFHIWHDGD 56 TL+ YE+QL K + ++ I P YR +A+F + D D Sbjct: 81 GCTLMAMSYERQLEFKRHLIENNLIRIGGLSGIEVPPVIGMDNPYRYRNKAQFPVGTDKD 140 Query: 57 DLY-HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLE-----------PLLRAKL 104 + +T + + + GS + ++ E+ A + + L+R L Sbjct: 141 GNIVMGFYAGRTHSIIPNEDCLIGSDINAGILAEIKAFMIMNHIKSYDENSHSGLVRHIL 200 Query: 105 FQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR 164 + + T Q +V + +D + + L + + I + KT + L + Sbjct: 201 IRTGFTTGQIMVCVVINGSNIPKEDELVKKLLALSFSNERKIASIMVNINREKTNVILGK 260 Query: 165 D----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYC 218 Y + + YR SF Q N + L G+ G+ + +LYC Sbjct: 261 KCRVLYGTPYIEDYIGEVKYRIQPLSFYQVNPVQTEKLYNIALD-YAGLTGNETVWDLYC 319 Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278 G G SL LA+ +V VEI ++E A N N ++N + ++E Sbjct: 320 GIGTISLFLAKKAKKVYGVEIVPEAIEDAVTNAKLNGIDNAEFYVGKAEEILP------- 372 Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCRDLSIL- 335 + D + I VDPPR G D+A +G MV+ P I+Y+SC+ +L RDL L Sbjct: 373 ----EKYDKENVHADVIVVDPPRKGCDEALLGTMVKMAPERIVYVSCDSATLARDLKFLV 428 Query: 336 STTHTIERLALFDQFPYTRHMECGVLLV 363 + ++++ DQF ++ H+E VL+V Sbjct: 429 GNGYEVKKVQGVDQFCHSGHVETVVLMV 456 >gi|157415098|ref|YP_001482354.1| tRNA (uracil-5-)-methyltransferase [Campylobacter jejuni subsp. jejuni 81116] gi|172047119|sp|A8FLP0|TRMA_CAMJ8 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|157386062|gb|ABV52377.1| tRNA (uracil-5-)-methyltransferase [Campylobacter jejuni subsp. jejuni 81116] gi|307747739|gb|ADN91009.1| tRNA (uracil-5-)-methyltransferase [Campylobacter jejuni subsp. jejuni M1] gi|315931160|gb|EFV10133.1| tRNA (uracil-5-)-methyltransferase [Campylobacter jejuni subsp. jejuni 327] Length = 357 Score = 304 bits (778), Expect = 2e-80, Method: Composition-based stats. Identities = 133/352 (37%), Positives = 207/352 (58%), Gaps = 8/352 (2%) Query: 14 LAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRI 73 L EK +++ F + ++F S+ HYR RAE +H+ D L++ MFD ++K++ I Sbjct: 12 LDEKHSFIKKYFKEFYTKDFKLFASKDKHYRTRAELSFYHENDTLFYAMFDPKSKKKYII 71 Query: 74 DYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRE 133 +Y I A M +++ +R + L+ KLF +++LT++ + +I TL+YH+ ++D + Sbjct: 72 EYLDFADEKICAFMPKLLEYLRQDNKLKEKLFGVEFLTTKQELSI-TLLYHKNIED-IKS 129 Query: 134 CAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAG 193 L + LH I LI R+ K+ + + + L + R + Y + F QPN Sbjct: 130 NLENLSNILH-----INLIARSKGKKLIFKTENLRQTLNIQDRKIFYEFNNDCFIQPNTT 184 Query: 194 INVHMLEWVLA-ATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIA 252 IN M+ WV + DLLELYCG GNF+L LA F +VLA EI+K ++ A N Sbjct: 185 INEKMITWVCEILNTQKRMDLLELYCGYGNFTLALAPFFFKVLATEISKSNINFALKNCK 244 Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312 N+ N+ R+SS+E + A+++EREF RLKDI + + F + VDPPR+GLD + + ++ Sbjct: 245 LNNTTNIHFARLSSEELSLAIKKEREFFRLKDIRLDDFNFSHVLVDPPRAGLDKSVIDLI 304 Query: 313 QAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 + Y +I+YISCNP +L +L LS TH +E ALFDQF T H+ECGV L + Sbjct: 305 KKYENIIYISCNPITLKENLKELSLTHRVEEFALFDQFVNTPHLECGVFLSK 356 >gi|86152063|ref|ZP_01070275.1| tRNA (uracil-5-)-methyltransferase [Campylobacter jejuni subsp. jejuni 260.94] gi|86153337|ref|ZP_01071541.1| tRNA (uracil-5-)-methyltransferase [Campylobacter jejuni subsp. jejuni HB93-13] gi|315124348|ref|YP_004066352.1| tRNA (uracil-5-)-methyltransferase [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|85840848|gb|EAQ58098.1| tRNA (uracil-5-)-methyltransferase [Campylobacter jejuni subsp. jejuni 260.94] gi|85843063|gb|EAQ60274.1| tRNA (uracil-5-)-methyltransferase [Campylobacter jejuni subsp. jejuni HB93-13] gi|315018070|gb|ADT66163.1| tRNA (uracil-5-)-methyltransferase [Campylobacter jejuni subsp. jejuni ICDCCJ07001] Length = 357 Score = 304 bits (778), Expect = 2e-80, Method: Composition-based stats. Identities = 132/352 (37%), Positives = 206/352 (58%), Gaps = 8/352 (2%) Query: 14 LAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRI 73 L EK +++ F + ++F S+ HYR RAE +H+ D L++ MFD ++K++ I Sbjct: 12 LDEKHSFIKKYFKEFYTKDFKLFTSKDKHYRTRAELSFYHENDTLFYAMFDPKSKKKYII 71 Query: 74 DYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRE 133 +Y I A M +++ + + L+ KLF +++LT++ + + VTL+YH+ ++D + Sbjct: 72 EYLDFADEKICAFMPKLLEYLHQDNKLKEKLFGVEFLTTKQELS-VTLLYHKNIED-IKS 129 Query: 134 CAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAG 193 L + LH I LI R+ K+ + + + L + R + Y + F QPN Sbjct: 130 NLENLSNNLH-----INLIARSKGKKLIFKTENLRQTLNIQDRKIFYEFNNDCFIQPNTA 184 Query: 194 INVHMLEWVLA-ATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIA 252 IN M+ WV + DLLELYCG GNF+L LA F +VLA EI+K ++ A N Sbjct: 185 INEKMITWVCEILNTQKRMDLLELYCGYGNFTLALAPFFFKVLATEISKSNINFALKNCE 244 Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312 N+ N+ R+SS+E + A+++EREF RLKDI + + F + VDPPR+GLD + + ++ Sbjct: 245 LNNTTNIHFARLSSEELSLAIKKEREFFRLKDIRLDDFNFSHVLVDPPRAGLDKSVIDLI 304 Query: 313 QAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 + Y +I+YISCNP +L +L LS TH +E ALFDQF T H+ECGV L + Sbjct: 305 KKYENIIYISCNPITLKENLKELSLTHRVEEFALFDQFVNTPHLECGVFLSK 356 >gi|138893974|ref|YP_001124427.1| RNA methyltransferase-like protein [Geobacillus thermodenitrificans NG80-2] gi|196250476|ref|ZP_03149167.1| RNA methyltransferase, TrmA family [Geobacillus sp. G11MC16] gi|134265487|gb|ABO65682.1| RNA methyltransferase-like protein [Geobacillus thermodenitrificans NG80-2] gi|196209966|gb|EDY04734.1| RNA methyltransferase, TrmA family [Geobacillus sp. G11MC16] Length = 460 Score = 303 bits (776), Expect = 3e-80, Method: Composition-based stats. Identities = 80/388 (20%), Positives = 143/388 (36%), Gaps = 40/388 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFHIWHDGD 56 L YE QL K ++++++ I P YR +A+ + Sbjct: 86 GCQLQHLSYEGQLKAKEKQVKEVLARIGKLEHVTVHPVIGMKNPWRYRNKAQVPVGEREG 145 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLF 105 L + +++ E + +D + + + +LR + Sbjct: 146 GLIAGFYKERSHEIIDMDACFIQQEKNDVVVQAVKRIAERYGVRPYDELTHRGVLRHIVA 205 Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDAWRECAIR----LRDALHARKYQIQLIGRANKTKIC 161 + T + +VT + IR ++ + + + KT++ Sbjct: 206 RYGAATGEVMVVLVTRTERLPHEQEIVRDIIRDIPDVKSIVQNINPERTNVIFGAKTRVL 265 Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220 +++ +R+ + + SF Q N + + L A +++ YCG Sbjct: 266 WGSEFITDRIG----DIQFAISARSFYQVNPEQTKVLYDKALEYAELTGTETVIDAYCGI 321 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G SL LA+ V VEI ++E A+ N A N + NV ++++ E Sbjct: 322 GTISLFLAKKAKHVYGVEIVPEAIEDAKRNAALNGITNVTFAVGAAEDVIPRWYEE---- 377 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILS-T 337 R + VDPPR G D A + + A P ++Y+SCNP +L RDL IL Sbjct: 378 --------GIRADCLVVDPPRKGCDAALLETIMAMKPPRVVYVSCNPATLARDLRILEDG 429 Query: 338 THTIERLALFDQFPYTRHMECGVLLVRK 365 + + D FP+T H+E L K Sbjct: 430 GYETIEVQPVDMFPHTAHVESVARLALK 457 >gi|205372478|ref|ZP_03225291.1| RNA methyltransferase-like protein [Bacillus coahuilensis m4-4] Length = 456 Score = 303 bits (776), Expect = 3e-80, Method: Composition-based stats. Identities = 79/389 (20%), Positives = 149/389 (38%), Gaps = 42/389 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56 + YE QL K ++ +M + + +P YR +A+ + Sbjct: 85 GCQIQHMDYEGQLKSKGKHVKDVMERIGKIQNVPVHPVLGMDDPWRYRNKAQVPVGMRQG 144 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALM-----------IEMMATIRLEPLLRAKLF 105 +L F + + E + + Y + + ++ I+ + + ++R + Sbjct: 145 ELVAGFFAKGSHEIVDMPYCIIQHKKNDEVVQLVKDSFKKYGIQPYDEEKHQGVVRHVMV 204 Query: 106 QIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161 + + T + +VT L + + L + L+ H + + +T+I Sbjct: 205 RTGHKTGEVMVVLVTKTSKLPFKQQLVEDLVHQVEGLKSIAHNINSKRTNVIMGEETRIL 264 Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCG 219 Y+ + + + + SF Q N + + L G+ G+ +++ YCG Sbjct: 265 WGERYIYDYIG----DVRFAISPRSFYQVNPEQTKVLYDKALE-FAGLTGNETVIDAYCG 319 Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279 G SL LA V VEI ++ A+ N N NV+ +++ A Sbjct: 320 IGTISLFLAERAKHVYGVEIVPEAIVDAKRNAELNGFTNVEFEVGPAEDVIPAWYD---- 375 Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSIL-S 336 + + VDPPR G D+ + ++ ++Y+SCNP +L RDL +L Sbjct: 376 --------RGIKADVLVVDPPRKGCDEKLLDTIKKMKPEKVVYVSCNPATLARDLKVLQE 427 Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVRK 365 + + D FP T H+E LLVRK Sbjct: 428 GGYYTVEIQPVDMFPQTMHVEAVALLVRK 456 >gi|283957181|ref|ZP_06374645.1| tRNA (uracil-5-)-methyltransferase [Campylobacter jejuni subsp. jejuni 1336] gi|283791357|gb|EFC30162.1| tRNA (uracil-5-)-methyltransferase [Campylobacter jejuni subsp. jejuni 1336] Length = 357 Score = 303 bits (775), Expect = 4e-80, Method: Composition-based stats. Identities = 131/352 (37%), Positives = 206/352 (58%), Gaps = 8/352 (2%) Query: 14 LAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRI 73 L EK +++ F ++F S+ HYR R E +H+ D L++ MFD ++K++ I Sbjct: 12 LDEKHSFIKKYFKEFYTKEFKLFASKDKHYRTRVELSFYHENDTLFYAMFDPKSKKKYII 71 Query: 74 DYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRE 133 +Y I A M +++ +R + L+ KLF +++LT++ + +I TL+YH+ ++D + Sbjct: 72 EYLDFADEKICAFMPKLLECLRQDSKLKEKLFGVEFLTTKQELSI-TLLYHKNIED-IKS 129 Query: 134 CAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAG 193 L + LH I LI R+ K+ + + + L + R + Y + F QPN Sbjct: 130 NLENLSNILH-----INLIARSKGKKLIFKTENLRQTLNIQDRKIFYEFNNDCFIQPNTA 184 Query: 194 INVHMLEWVLA-ATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIA 252 IN M+ WV + + DLLELYCG GNF+L LA F ++LA EI+K ++ A N Sbjct: 185 INEKMITWVCEILSTQKRMDLLELYCGYGNFTLALAPFFFKILATEISKSNINFALKNCE 244 Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312 N+ N+ R+SS+E + A+++EREF RLKDI + + F + VDPPR+GLD + + ++ Sbjct: 245 LNNTTNIHFARLSSEELSLAIKKEREFFRLKDIRLDDFNFSHVLVDPPRAGLDKSVIDLI 304 Query: 313 QAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 + Y +I+YISCNP +L +L LS TH +E ALFDQF T H+ECGV L + Sbjct: 305 KKYENIIYISCNPITLKENLKELSLTHRVEEFALFDQFANTPHLECGVFLSK 356 >gi|261418678|ref|YP_003252360.1| RNA methyltransferase, TrmA family [Geobacillus sp. Y412MC61] gi|319765493|ref|YP_004130994.1| RNA methyltransferase, TrmA family [Geobacillus sp. Y412MC52] gi|261375135|gb|ACX77878.1| RNA methyltransferase, TrmA family [Geobacillus sp. Y412MC61] gi|317110359|gb|ADU92851.1| RNA methyltransferase, TrmA family [Geobacillus sp. Y412MC52] Length = 457 Score = 303 bits (775), Expect = 4e-80, Method: Composition-based stats. Identities = 83/391 (21%), Positives = 146/391 (37%), Gaps = 46/391 (11%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56 L YE QL K ++++++ + I P YR +A+ I Sbjct: 86 GCQLQHLSYEGQLKAKEKQVKEVLARIGKLDGVTVHPVIGMKNPWRYRNKAQVPIGEREG 145 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLF 105 L + +++ E + +D + + I + +LR + Sbjct: 146 GLVVGFYKERSHEIIDMDACLIQQEKNDVVVQTVKRIAERYGIPPYDETTHKGVLRHIVA 205 Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRAN-------KT 158 + T + +VT H +E + + +Q I KT Sbjct: 206 RYGAATGEVMVVLVTRTEHLP---HEQEIVRAIVREIPDVTSIVQNINPERTNVIFGAKT 262 Query: 159 KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELY 217 ++ +Y+ +R+ + + SF Q N + + L A +++ Y Sbjct: 263 RVLWGSEYITDRIG----DIQFAISARSFYQVNPEQTKVLYDKALEYAELTGSETVMDAY 318 Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277 CG G SL LAR V VEI ++E A+ N N + NV ++++ +E Sbjct: 319 CGIGTISLFLARKAKHVYGVEIVPEAIEDAKRNAELNGIRNVTFEVGAAEDVIPRWYQE- 377 Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSIL 335 R + VDPPR G D + + + A P ++Y+SCNP +L RDL IL Sbjct: 378 -----------GIRADCLVVDPPRKGCDASLLETIIAMKPPRVVYVSCNPATLARDLRIL 426 Query: 336 S-TTHTIERLALFDQFPYTRHMECGVLLVRK 365 + + D FP+T H+EC + + Sbjct: 427 EDGGYETIEVQPVDMFPHTAHVECVAKIQLR 457 >gi|295400536|ref|ZP_06810514.1| RNA methyltransferase, TrmA family [Geobacillus thermoglucosidasius C56-YS93] gi|294977439|gb|EFG53039.1| RNA methyltransferase, TrmA family [Geobacillus thermoglucosidasius C56-YS93] Length = 459 Score = 302 bits (774), Expect = 6e-80, Method: Composition-based stats. Identities = 79/387 (20%), Positives = 149/387 (38%), Gaps = 40/387 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFHIWHDGD 56 L Y+ QL K +++++M I P YR +A+ + Sbjct: 86 GCQLQHLSYDGQLRAKQKQVKEVMARIGKLENVIVHPVIGMKNPWRYRNKAQVPVGEREG 145 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLF 105 L + +++ E + +D + + I + + +LR + Sbjct: 146 RLVVGFYQERSHEIIDMDACLIQQEMNDAVVRTVKKICEKYRIPVYNEATHKGVLRHIMA 205 Query: 106 QIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161 + T + ++T L + + + E ++ + + + ++TK+ Sbjct: 206 RYGAATQEVMVVLITRTAELPHKKKIVQEIIESVPNVKSIIQNINPKKTNVIMGDETKVL 265 Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220 +Y+ + + + + SF Q N + E L A + +++ YCG Sbjct: 266 WGAEYIYDYIG----DIQFAISARSFYQVNPAQTKVLYEKALEYAQLTGEETVIDAYCGI 321 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G SL LA+ +V VE+ ++E A+ N A N + NV+ ++ + Sbjct: 322 GTISLFLAKKAKKVFGVEVVPEAIEDAKRNAALNRITNVEFAVGEAEAVIPKWYK----- 376 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILS-T 337 R I VDPPR G D+ + + A ++Y+SCNP +L RDL IL Sbjct: 377 -------QGIRADCIVVDPPRKGCDETLLQTIIAMKPKRVVYVSCNPATLARDLRILEDG 429 Query: 338 THTIERLALFDQFPYTRHMECGVLLVR 364 + + D FP+T H+EC L+ R Sbjct: 430 GYQTLEVQPVDMFPHTAHVECCALIKR 456 >gi|86150214|ref|ZP_01068441.1| tRNA (uracil-5-)-methyltransferase [Campylobacter jejuni subsp. jejuni CF93-6] gi|88597584|ref|ZP_01100818.1| tRNA (uracil-5-)-methyltransferase [Campylobacter jejuni subsp. jejuni 84-25] gi|85839330|gb|EAQ56592.1| tRNA (uracil-5-)-methyltransferase [Campylobacter jejuni subsp. jejuni CF93-6] gi|88190176|gb|EAQ94151.1| tRNA (uracil-5-)-methyltransferase [Campylobacter jejuni subsp. jejuni 84-25] gi|284926076|gb|ADC28428.1| tRNA (uracil-5-)-methyltransferase [Campylobacter jejuni subsp. jejuni IA3902] gi|315927708|gb|EFV07037.1| tRNA-uracil-5-methyltransferase [Campylobacter jejuni subsp. jejuni DFVF1099] gi|315929085|gb|EFV08317.1| tRNA (uracil-5-)-methyltransferase [Campylobacter jejuni subsp. jejuni 305] Length = 357 Score = 302 bits (774), Expect = 6e-80, Method: Composition-based stats. Identities = 132/352 (37%), Positives = 206/352 (58%), Gaps = 8/352 (2%) Query: 14 LAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRI 73 L EK +++ F + ++F S+ HYR RAE +H+ D L++ MFD ++K++ I Sbjct: 12 LDEKHSFIKKYFKEFYTKDFKLFASKDKHYRTRAELSFYHENDTLFYAMFDPKSKKKYII 71 Query: 74 DYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRE 133 +Y I A M ++ +R + L+ KLF +++LT++ + +I TL+YH+ ++D + Sbjct: 72 EYLDFADEKICAFMPRLLEYLRQDNKLKEKLFGVEFLTTKQELSI-TLLYHKNIED-IKS 129 Query: 134 CAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAG 193 L + LH I LI R+ K+ + + + L + R + Y + F QPN Sbjct: 130 NLENLSNILH-----INLIARSKGKKLIFKTENLRQTLNIQDRKIFYEFNNDCFIQPNTA 184 Query: 194 INVHMLEWVLA-ATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIA 252 IN M+ WV + DLLELYCG GNF+L LA F ++LA EI+K ++ A N Sbjct: 185 INEKMITWVCEILNTQKRMDLLELYCGYGNFTLALAPFFFKILATEISKSNINFALKNCE 244 Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312 N+ N+ R+SS+E + A+++EREF RLKDI + + F + VDPPR+GLD + + ++ Sbjct: 245 LNNTTNIHFARLSSEELSLAIKKEREFFRLKDIRLDDFNFSHVLVDPPRAGLDKSVIDLI 304 Query: 313 QAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 + Y +I+YISCNP +L +L LS TH +E ALFDQF T H+ECGV L + Sbjct: 305 KKYGNIIYISCNPITLKENLKELSLTHRVEEFALFDQFVNTPHLECGVFLSK 356 >gi|218562459|ref|YP_002344238.1| tRNA (uracil-5-)-methyltransferase [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|20178174|sp|Q9PP92|TRMA_CAMJE RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|112360165|emb|CAL34959.1| tRNA (uracil-5-)-methyltransferase [Campylobacter jejuni subsp. jejuni NCTC 11168] Length = 357 Score = 302 bits (773), Expect = 6e-80, Method: Composition-based stats. Identities = 132/352 (37%), Positives = 206/352 (58%), Gaps = 8/352 (2%) Query: 14 LAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRI 73 L EK +++ F + ++F S+ HYR RAE +H+ D L++ MFD ++K++ I Sbjct: 12 LDEKHSFIKKYFKEFYTKDFKLFASKDKHYRTRAELSFYHENDTLFYAMFDPKSKKKYII 71 Query: 74 DYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRE 133 +Y I A M ++ +R + L+ KLF +++LT++ + +I TL+YH+ ++D + Sbjct: 72 EYLDFADEKICAFMPRLLEYLRQDNKLKEKLFGVEFLTTKQELSI-TLLYHKNIED-IKS 129 Query: 134 CAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAG 193 L + LH I LI R+ K+ + + + L + R + Y + F QPN Sbjct: 130 NLENLSNILH-----INLIARSKGKKLIFKTENLRQTLNIQDRKIFYEFNNDCFIQPNTA 184 Query: 194 INVHMLEWVLA-ATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIA 252 IN M+ WV + DLLELYCG GNF+L LA F ++LA EI+K ++ A N Sbjct: 185 INEKMITWVCEILNTQKRMDLLELYCGYGNFTLALAPFFFKILATEISKSNINFALKNCE 244 Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312 N+ N+ R+SS+E + A+++EREF RLKDI + + F + VDPPR+GLD + + ++ Sbjct: 245 LNNTTNIHFARLSSEELSLAIKKEREFFRLKDIRLDDFNFSHVLVDPPRAGLDKSVIDLI 304 Query: 313 QAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 + Y +I+YISCNP +L +L LS TH +E ALFDQF T H+ECGV L + Sbjct: 305 KKYGNIIYISCNPMTLKENLKELSLTHRVEEFALFDQFVNTPHLECGVFLSK 356 >gi|312112373|ref|YP_003990689.1| RNA methyltransferase, TrmA family [Geobacillus sp. Y4.1MC1] gi|311217474|gb|ADP76078.1| RNA methyltransferase, TrmA family [Geobacillus sp. Y4.1MC1] Length = 459 Score = 302 bits (773), Expect = 7e-80, Method: Composition-based stats. Identities = 79/387 (20%), Positives = 149/387 (38%), Gaps = 40/387 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFHIWHDGD 56 L Y+ QL K +++++M I P YR +A+ + Sbjct: 86 GCQLQHLSYDGQLRAKQKQVKEVMARIGKLENVIVHPVIGMKNPWRYRNKAQVPVGEREG 145 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLF 105 L + +++ E + +D + + I + + +LR + Sbjct: 146 RLVAGFYQERSHEIIDMDACLIQQEMNDAVVRTVKKICEKYRIPVYNEAAHKGVLRHIMA 205 Query: 106 QIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161 + T + ++T L + + + E ++ + + + ++TK+ Sbjct: 206 RYGAATQEVMVVLITRTAELPHKKKIVQEIIESVPNVKSIIQNINPKKTNVIMGDETKVL 265 Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220 +Y+ + + + + SF Q N + E L A + +++ YCG Sbjct: 266 WGAEYIYDYIG----DIQFAISARSFYQVNPAQTKVLYEKALEYAQLTGEETVIDAYCGI 321 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G SL LA+ +V VE+ ++E A+ N A N + NV+ ++ + Sbjct: 322 GTISLFLAKKAKKVFGVEVVPEAIEDAKRNAALNRITNVEFAVGEAEAVIPKWYK----- 376 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILS-T 337 R I VDPPR G D+ + + A ++Y+SCNP +L RDL IL Sbjct: 377 -------QGIRADCIVVDPPRKGCDETLLQTIIAMKPKRVVYVSCNPATLARDLRILEDG 429 Query: 338 THTIERLALFDQFPYTRHMECGVLLVR 364 + + D FP+T H+EC L+ R Sbjct: 430 GYQTLEVQPVDMFPHTAHVECCALIKR 456 >gi|332798852|ref|YP_004460351.1| TrmA family RNA methyltransferase [Tepidanaerobacter sp. Re1] gi|332696587|gb|AEE91044.1| RNA methyltransferase, TrmA family [Tepidanaerobacter sp. Re1] Length = 460 Score = 302 bits (773), Expect = 7e-80, Method: Composition-based stats. Identities = 76/385 (19%), Positives = 149/385 (38%), Gaps = 39/385 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWHDGDD 57 L YE QL K +++ + + + I +P HYR ++++ + G+ Sbjct: 87 GCNLQHMTYEAQLLFKTSKVKDSLKRIGHIDAEVIDTIGMQQPWHYRNKSQYPVAKQGNS 146 Query: 58 LYHIMFDQQTKERMRIDYFMPGSLL-----------INALMIEMMATIRLEPLLRAKLFQ 106 + +++ + + ++ + + + I + ++ E L+R + + Sbjct: 147 TVMGFYKKRSHDIVDLENCLIQHPISDKVMQIIKRWLTRYDISIYDELKHEGLIRHVMVR 206 Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAW----RECAIRLRDALHARKYQIQLIGRANKTKICL 162 + + + A++ D + + + + + K Sbjct: 207 VGNKSKEVMAALIANGKEIPHTDDLIKMLQCDIPGFKSLILNINTKKTNVIMGEKNITLY 266 Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNG 221 Y+ + + + +R SF Q N + VL Q + +L+LYCG G Sbjct: 267 GSPYIYDYIG----DIKFRLSPLSFFQVNPIQAEVLYNKVLEYAGITQDEIVLDLYCGTG 322 Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281 +L LA+ + +E+ +V AR N N +NN + + +++ M E Sbjct: 323 TITLFLAQKAKKAYGIELVSQAVADARLNAKINGINNAEFIEGAAEAVLPKMAEE----- 377 Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILS-TT 338 + I VDPPR G D+ T+ + I+Y+SCNP +L RDL L Sbjct: 378 -------GIKPDIIVVDPPRRGCDEKTLKTITKISPKKIIYVSCNPATLARDLRYLEDKG 430 Query: 339 HTIERLALFDQFPYTRHMECGVLLV 363 + ++ D FP T H+EC VL+ Sbjct: 431 YKTQKAQPVDMFPQTSHVECVVLMT 455 >gi|323705003|ref|ZP_08116579.1| RNA methyltransferase, TrmA family [Thermoanaerobacterium xylanolyticum LX-11] gi|323535429|gb|EGB25204.1| RNA methyltransferase, TrmA family [Thermoanaerobacterium xylanolyticum LX-11] Length = 453 Score = 301 bits (772), Expect = 1e-79, Method: Composition-based stats. Identities = 92/386 (23%), Positives = 165/386 (42%), Gaps = 39/386 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIF----RSEPIHYRMRAEFHIWHDGDD 57 TL Y QL K + + + ++ +F ++P+HYR +AE+ + Sbjct: 82 GCTLQHLTYSGQLEFKKHVVGESLKRIGKIDIVVFDTIGMADPLHYRDKAEYPLSIKNGK 141 Query: 58 LYHIMFDQQTKERMRIDYFMPGS-----------LLINALMIEMMATIRLEPLLRAKLFQ 106 + + ++ E + ID M S N I + + LR + + Sbjct: 142 IEGGFYASKSHEVVGIDSCMIQSSVSVNAMKTVVEWANDYKITVYDKKTGKGFLRHVITK 201 Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD- 165 + + T + +V ++ + +E RL+ + K + + R+N ++ + + Sbjct: 202 VGFATK---EVMVIIVANSRDIPHKKELVSRLKGKIENLKSVVLNVNRSNGKQVMGNENI 258 Query: 166 --YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNG 221 Y D+ +T + SF Q N + E L ++GD + ++YCG G Sbjct: 259 VIYGDDYITDFIGDKKFEISPLSFFQVNPVQTKVLYEKALE-YADLKGDEIVFDVYCGIG 317 Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281 S+ A+H +V +E+ +VE AR N A N VNN + + +++ Sbjct: 318 TISIFFAKHARKVYGIEVIPDAVEDARQNAAINGVNNAEFIAGKAEDI------------ 365 Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGM-VQAYP-HILYISCNPDSLCRDLSILS-TT 338 + ++ + I DPPR GLD V ++ P I+Y+SCNP +L RDL I Sbjct: 366 MIELCNKGLKPDVIVFDPPRKGLDKDVVEASIKMNPEKIIYVSCNPTTLARDLRIFEDNG 425 Query: 339 HTIERLALFDQFPYTRHMECGVLLVR 364 + +++ D FPYT H+EC VL+ R Sbjct: 426 YRTKKVQPVDMFPYTYHVECVVLMSR 451 >gi|89097040|ref|ZP_01169931.1| YefA [Bacillus sp. NRRL B-14911] gi|89088420|gb|EAR67530.1| YefA [Bacillus sp. NRRL B-14911] Length = 458 Score = 301 bits (772), Expect = 1e-79, Method: Composition-based stats. Identities = 75/389 (19%), Positives = 146/389 (37%), Gaps = 40/389 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFHIWHDGD 56 L Y+ Q+ K ++R ++ + SEP YR +A+ I Sbjct: 85 GCQLQHLSYQGQMLAKEKQVRDVLTRIGKLEDVKVHPVLGMSEPWRYRNKAQVPIGEHEG 144 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKLF 105 L + Q++ + + + + + ++ + + LR + Sbjct: 145 GLIGGFYQQRSHQIIDMKECLIQQEKNDEVVQTVKEICAKYGVRAYDEGRHKGELRHIMA 204 Query: 106 QIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161 + +T + ++T L + + + ++ +H + + + T++ Sbjct: 205 RHGLVTGEVMVVLITRTNELPNRKKITEEIAASIKGIKSIVHNVNPKKTNVIFGDVTRVI 264 Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220 +E + + + SF Q N + E L A + +++ YCG Sbjct: 265 WG----EEVIYDYIGDIKFAISARSFYQVNPEQTKVLYEKALEYADLSGEESVIDAYCGI 320 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G SL LA+ +V VEI ++E A+ N A N + N + +++ +E Sbjct: 321 GTISLFLAQKAKKVFGVEIVPEAIEDAKRNAALNGITNAEFAVGEAEKVIPDWYKE---- 376 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILS-T 337 + + VDPPR G D+A + + + ++Y+SCNP +L RDL IL Sbjct: 377 --------GNQADVLVVDPPRKGCDEALLQTILSMKPKKVVYVSCNPATLARDLRILEDG 428 Query: 338 THTIERLALFDQFPYTRHMECGVLLVRKP 366 + E + D FP T H E + K Sbjct: 429 GYKTEEVQPVDMFPQTMHCEAVAKITLKD 457 >gi|251794918|ref|YP_003009649.1| RNA methyltransferase, TrmA family [Paenibacillus sp. JDR-2] gi|247542544|gb|ACS99562.1| RNA methyltransferase, TrmA family [Paenibacillus sp. JDR-2] Length = 465 Score = 301 bits (771), Expect = 1e-79, Method: Composition-based stats. Identities = 84/402 (20%), Positives = 145/402 (36%), Gaps = 57/402 (14%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ--------------VPNLQIFRSEPIHYRMRA 47 L Y QL K + + + + ++P YR +A Sbjct: 83 GCQLQHMDYAAQLNWKRQHVVDALERIGKLQIAGEGEEASGITVHPTVGMNDPWRYRNKA 142 Query: 48 EFHIWHDGD--DLYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATI 94 + + +L + + + + D + L + Sbjct: 143 QVPVGASAGAGELIAGFYAKGSHRIIDTDQCHIQHDRNDEVVRIVKAIGRELGVSAYDEE 202 Query: 95 RLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIG- 153 + LLR + + +++ + +VT + W E R+R AL K +Q + Sbjct: 203 SGKGLLRHVMTRTGFVSGEIMVVLVTNGRKLPQAELWVE---RIRAALPEVKSIVQNVNT 259 Query: 154 ------RANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-AT 206 ++TK+ + + + L + + SF Q N + + + A Sbjct: 260 RDTNVIFGDETKVLWGSEVIYDEL----DGIRFAISARSFYQVNPSQTIELYRTAVDYAQ 315 Query: 207 KGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266 + +++ YCG G SL LAR RV VEI ++E A+ N N ++N + Sbjct: 316 LTGKESVIDAYCGIGTISLFLARKAGRVYGVEIVPEAIEDAKRNAELNGISNASFEAGPA 375 Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCN 324 + R E I VDPPR G D A + + ++Y+SCN Sbjct: 376 EVVIPRWREE------------GIIPDVIVVDPPRKGCDPALLDTILKMQPERVVYVSCN 423 Query: 325 PDSLCRDLSILS-TTHTIERLALFDQFPYTRHMECGVLLVRK 365 P +L RDL L + + D FP+T H+EC V +VRK Sbjct: 424 PSTLARDLRTLEDGGYKTVEVTPVDMFPWTSHVECVVWMVRK 465 >gi|326791042|ref|YP_004308863.1| RNA methyltransferase, TrmA family [Clostridium lentocellum DSM 5427] gi|326541806|gb|ADZ83665.1| RNA methyltransferase, TrmA family [Clostridium lentocellum DSM 5427] Length = 452 Score = 301 bits (771), Expect = 1e-79, Method: Composition-based stats. Identities = 83/387 (21%), Positives = 152/387 (39%), Gaps = 41/387 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-VPNLQI----FRSEPIHYRMRAEFHIWHDGD 56 L YE QL K +++ + + ++++ P HYR +A++ I Sbjct: 83 GCQLQHLSYEAQLDWKTKKVKDCLNRIGGLKDIEVLPTLGMGTPYHYRNKAQYPIRQING 142 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKLF 105 + F ++ + + ++ A+M ++A + L+R + Sbjct: 143 KVQTGFFAPRSHQLIPLETCYIQDPKKEAIMKAVLAFLEKYKISIYDEEKHTGLVRHLMI 202 Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD 165 + Y T ++ +V L+ + E ++ I L K+ L Sbjct: 203 KTGYHT---EEMMVCLVINGPKLPHADEFVKAIKAVAP--VTSIILNQHLEKSNTILGNS 257 Query: 166 Y----VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGN 220 + + L ++ SF Q N + L + + + + YCG Sbjct: 258 CTVLDGENAIIDYIGDLQFKISPLSFFQVNPQQTEVLYTKALEYAELTGDEIVWDAYCGI 317 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G+ SL LA+ +V VEI ++E A+ N A NH+ N + ++E M Sbjct: 318 GSISLFLAQKAKKVYGVEIIPEAIENAKENAALNHITNAEFYVGKAEEVIPQMYE----- 372 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCRDLSIL-ST 337 TI VDPPR G D + +++ P I+Y+SC+P +L RDL+ L + Sbjct: 373 -------QGIVADTIVVDPPRKGCDSKLLETLIKMSPNKIVYVSCDPATLARDLAYLVAE 425 Query: 338 THTIERLALFDQFPYTRHMECGVLLVR 364 + ++++ D FP T H+E V L R Sbjct: 426 GYQVDKVQPVDMFPQTTHVETVVKLSR 452 >gi|313892756|ref|ZP_07826337.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Veillonella sp. oral taxon 158 str. F0412] gi|313442687|gb|EFR61098.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Veillonella sp. oral taxon 158 str. F0412] Length = 494 Score = 301 bits (770), Expect = 2e-79, Method: Composition-based stats. Identities = 80/389 (20%), Positives = 148/389 (38%), Gaps = 42/389 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56 L YE QL+ K +++ ++ + + EP YR + + + Sbjct: 123 GCQLQHITYEGQLSLKTQKVKDVIERIGHQNPDLVKPALGPKEPWAYRNKMQMPVGGTKG 182 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSL---LINALMIEMMATIRLEP--------LLRAKLF 105 D+ + + + ++ +I ++ +EP +LR + Sbjct: 183 DIQMGFYAMGSHDIVQGTNCPIQDEGNNIIAQACYQIAKEFDIEPYDEHTGNGILRHVIG 242 Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD 165 +I S +VT H + W E +L + + + + + +T + L Sbjct: 243 RIGQ--SGWMIILVTATDHLPHQEKWVE---KLTERIPQVETIVHNVN-GKRTNVILGPK 296 Query: 166 ----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220 Y D +T + L + +SF Q N + + LA A +++ YCG Sbjct: 297 NNILYGDGTITDHIKDLRFTLSPHSFFQVNPEQTTVLYDQALAYADLKGDETVIDAYCGT 356 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G SL LA V+ +EI +P++ AR N N +N + + + Sbjct: 357 GTISLFLAHKAKHVIGIEIVEPAIINARENAKCNGYDNTEFIVADAA------------V 404 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILST- 337 + + R I DP R+G + + I+Y+SCNP ++ RD+ IL+ Sbjct: 405 EMPKLYKAGVRADVIVFDPIRAGCKEEVLTSAAGMEPKRIVYVSCNPATMARDIEILTHY 464 Query: 338 THTIERLALFDQFPYTRHMECGVLLVRKP 366 + ++ + D FP T H+E LL RK Sbjct: 465 GYELKEVQPVDMFPMTAHVETVCLLSRKD 493 >gi|153956154|ref|YP_001396919.1| tRNA (uracil-5-)-methyltransferase-related protein [Clostridium kluyveri DSM 555] gi|146349012|gb|EDK35548.1| TRNA (uracil-5-)-methyltransferase-related protein [Clostridium kluyveri DSM 555] Length = 469 Score = 301 bits (770), Expect = 2e-79, Method: Composition-based stats. Identities = 81/402 (20%), Positives = 154/402 (38%), Gaps = 53/402 (13%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ------------------IFRSEPIHY 43 L Y+ QL+ K +R++ + + I P Y Sbjct: 83 GCQLQHLSYDGQLSFKENRVKDCLERIGKLQVISGEQSIHQHGSVTKLYHTIGMENPYRY 142 Query: 44 RMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMA 92 R + + + + + + +++ E + + S I IE Sbjct: 143 RNKVQLPVGSSKNGINIGFYAKKSHEIINMTSCFIQSETSDKIVKLIRQWIEKYNIEPYN 202 Query: 93 TIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIR----LRDALHARKYQ 148 + ++R + + + T++ IVT + H + E R ++ + Sbjct: 203 EKNGKGIIRHIMIREAFTTAEIMVVIVTAVSHLPYKKEFIEIITRNVPVIKSIVQNINRD 262 Query: 149 IQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKG 208 + + I RD +++ + + SF Q N + VL Sbjct: 263 RTNVIMGKECIILWGRDTINDYIG----KFKFSISPLSFFQVNPVQTEVLYNKVLEYAGL 318 Query: 209 IQGDLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267 +++ + YCG G SL L++ +V VEI ++E A N A N ++NV+ + S+ Sbjct: 319 TGNEVIFDAYCGTGTISLFLSQKAKKVYGVEIIPQAIENANMNAAENGIDNVEFITGKSE 378 Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ-AYPH-ILYISCNP 325 + + ++ R + VDPPR G ++A + + P I+Y+SC+P Sbjct: 379 KV------------IPELIKKGVRADVVVVDPPRKGCEEALLHSIADMRPRTIVYVSCDP 426 Query: 326 DSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVRKP 366 +L RDL+IL + +E++ D FP T H+E V L R+ Sbjct: 427 ATLARDLAILRDFGYRVEKVQPVDMFPQTSHVETIVSLQREN 468 >gi|219856479|ref|YP_002473601.1| hypothetical protein CKR_3136 [Clostridium kluyveri NBRC 12016] gi|219570203|dbj|BAH08187.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 478 Score = 300 bits (769), Expect = 2e-79, Method: Composition-based stats. Identities = 81/402 (20%), Positives = 154/402 (38%), Gaps = 53/402 (13%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ------------------IFRSEPIHY 43 L Y+ QL+ K +R++ + + I P Y Sbjct: 92 GCQLQHLSYDGQLSFKENRVKDCLERIGKLQVISGEQSIHQHGSVTKLYHTIGMENPYRY 151 Query: 44 RMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMA 92 R + + + + + + +++ E + + S I IE Sbjct: 152 RNKVQLPVGSSKNGINIGFYAKKSHEIINMTSCFIQSETSDKIVKLIRQWIEKYNIEPYN 211 Query: 93 TIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIR----LRDALHARKYQ 148 + ++R + + + T++ IVT + H + E R ++ + Sbjct: 212 EKNGKGIIRHIMIREAFTTAEIMVVIVTAVSHLPYKKEFIEIITRNVPVIKSIVQNINRD 271 Query: 149 IQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKG 208 + + I RD +++ + + SF Q N + VL Sbjct: 272 RTNVIMGKECIILWGRDTINDYIG----KFKFSISPLSFFQVNPVQTEVLYNKVLEYAGL 327 Query: 209 IQGDLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267 +++ + YCG G SL L++ +V VEI ++E A N A N ++NV+ + S+ Sbjct: 328 TGNEVIFDAYCGTGTISLFLSQKAKKVYGVEIIPQAIENANMNAAENGIDNVEFITGKSE 387 Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ-AYPH-ILYISCNP 325 + + ++ R + VDPPR G ++A + + P I+Y+SC+P Sbjct: 388 KV------------IPELIKKGVRADVVVVDPPRKGCEEALLHSIADMRPRTIVYVSCDP 435 Query: 326 DSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVRKP 366 +L RDL+IL + +E++ D FP T H+E V L R+ Sbjct: 436 ATLARDLAILRDFGYRVEKVQPVDMFPQTSHVETIVSLQREN 477 >gi|297528755|ref|YP_003670030.1| RNA methyltransferase, TrmA family [Geobacillus sp. C56-T3] gi|297252007|gb|ADI25453.1| RNA methyltransferase, TrmA family [Geobacillus sp. C56-T3] Length = 457 Score = 300 bits (769), Expect = 2e-79, Method: Composition-based stats. Identities = 81/387 (20%), Positives = 144/387 (37%), Gaps = 46/387 (11%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56 L YE QL K ++++++ + I P YR +A+ I Sbjct: 86 GCQLQHVSYEGQLKAKEKQVKEVLARIGKLDGVTVHPVIGMKNPWRYRNKAQVPIGEREG 145 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLF 105 L + +++ E + +D + + I + +LR + Sbjct: 146 GLVAGFYKERSHEIIDMDACLIQQEKNDVVVQTVKRIAERYGIPPYDETTHKGVLRHIVA 205 Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRAN-------KT 158 + T + +VT H +E + + +Q + KT Sbjct: 206 RYGAATGEVMVVLVTRTEHLP---HEQEIVRAIVREIPDVTSIVQNVNPERTNVIFGAKT 262 Query: 159 KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELY 217 ++ +++ +R+ + + SF Q N + + L A + +++ Y Sbjct: 263 RVLWGSEFITDRIG----GIQFAISARSFYQVNPEQTKVLYDKALEYAELTGRETVIDAY 318 Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277 CG G SL LAR V VEI ++E A+ N N + NV ++++ E Sbjct: 319 CGIGTISLFLARKAKHVYGVEIVPEAIEDAKRNAKPNGIQNVTFEVGAAEDVIPRWYEE- 377 Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSIL 335 R + VDPPR G D + + + A P ++Y+SCNP +L RDL IL Sbjct: 378 -----------GIRADCLVVDPPRKGCDASLLETIIAMKPPRVVYVSCNPATLARDLRIL 426 Query: 336 S-TTHTIERLALFDQFPYTRHMECGVL 361 + + D FP+T H+EC Sbjct: 427 EDGGYETIEVQPVDMFPHTAHVECVAK 453 >gi|288554996|ref|YP_003426931.1| RNA methyltransferase [Bacillus pseudofirmus OF4] gi|288546156|gb|ADC50039.1| RNA methyltransferase, TrmA family [Bacillus pseudofirmus OF4] Length = 459 Score = 300 bits (769), Expect = 2e-79, Method: Composition-based stats. Identities = 73/390 (18%), Positives = 143/390 (36%), Gaps = 40/390 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56 L YE QL K +++ ++ + + ++P YR +A+ + + Sbjct: 86 GCQLQHMSYEAQLTYKQKQVKDVLARIGQITDIPVHPTLGMNDPWRYRNKAQVPVGEEEG 145 Query: 57 DLYHIMFDQQTKERMRIDYFMPGS-----------LLINALMIEMMATIRLEPLLRAKLF 105 L + +++ + +D + + I + + LR + Sbjct: 146 GLIAGFYQERSHRIIDMDECLIQHQENDDVVSKVKEIAKKYGIRGYDEDKHKGTLRHVVA 205 Query: 106 QIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161 + T +VT L + + + RE ++ + + + ++T + Sbjct: 206 RYGKQTGDIMVVLVTRGKELPNKKNIIEEIRESIPDVKSIVQNINPKRTNVIFGDQTIVL 265 Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220 +Y+ + + + + SF Q N + + L A +++ YCG Sbjct: 266 WGDEYIYDSIG----DIRFAISARSFYQVNPDQTKVLYDKALEYADLKGDETVIDAYCGI 321 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G SL LA+ V VEI ++ A+ N N NV ++ Sbjct: 322 GTISLFLAQKAKHVYGVEIVPEAISDAKKNAEINGFTNVDFAVGEAENVMPWWYA----- 376 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILS-T 337 R I VDPPR G D+ + + ++Y+SCNP +L RDL +L Sbjct: 377 -------QGIRPDVIVVDPPRKGCDEKLLETILNMKPKRVVYVSCNPATLARDLRVLEDG 429 Query: 338 THTIERLALFDQFPYTRHMECGVLLVRKPS 367 + + + D FP++ H+E +VRK + Sbjct: 430 GYKTKEVQPVDMFPHSTHVEVVSQIVRKGN 459 >gi|121533508|ref|ZP_01665336.1| RNA methyltransferase, TrmA family [Thermosinus carboxydivorans Nor1] gi|121308067|gb|EAX48981.1| RNA methyltransferase, TrmA family [Thermosinus carboxydivorans Nor1] Length = 462 Score = 300 bits (768), Expect = 3e-79, Method: Composition-based stats. Identities = 89/392 (22%), Positives = 154/392 (39%), Gaps = 42/392 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56 L Y QL K ++ ++ V + + P +YR + +F + G+ Sbjct: 88 GCQLQHLSYAAQLTVKRQQVVDAIMRIGKLDGVVVHPTLPAPNPWYYRNKMQFPVGLAGN 147 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLF 105 + Q T + + ++ ++N L I + ++R L Sbjct: 148 RAVVGCYAQGTHDIVDTEHCYIQHQANNIIAAVMRDVVNKLGIATYDERTGKGVIRHILG 207 Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD 165 ++ T + IVT + +L A+ +Q I T + L + Sbjct: 208 RVGTATGEVMAVIVTATRELPHRE---RLIAKLTKAVPGLVSIVQNINPKR-TNVILGEE 263 Query: 166 ----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG--DLLELYCG 219 + E +T +++ SF Q N V + + G+ G ++ YCG Sbjct: 264 TSVIWGKETITDRLGGFVFQISARSFFQVNTEQTVRLYNKAVE-YAGLTGVETAIDAYCG 322 Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279 G +L LA+ +V +E+ +P+V A N N V+NV + + + + + Sbjct: 323 TGTITLFLAKRAAKVYGIEVVEPAVRDAWLNARRNGVDNVDFIVGDAVDVMPKLYK---- 378 Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM-VQAYP-HILYISCNPDSLCRDLSILST 337 R + I VDPPR+G D + V+ P I+Y+SCNP SL RDL++L+ Sbjct: 379 --------SGVRPQAIVVDPPRAGCDRRVLETFVRMQPDRIVYVSCNPASLARDLAVLAE 430 Query: 338 -THTIERLALFDQFPYTRHMECGVLLVRKPSG 368 + + D FP T H+EC V L RK S Sbjct: 431 CGYMTREIQPVDMFPQTSHIECVVSLKRKHSE 462 >gi|229542669|ref|ZP_04431729.1| RNA methyltransferase, TrmA family [Bacillus coagulans 36D1] gi|229327089|gb|EEN92764.1| RNA methyltransferase, TrmA family [Bacillus coagulans 36D1] Length = 457 Score = 300 bits (768), Expect = 3e-79, Method: Composition-based stats. Identities = 83/385 (21%), Positives = 145/385 (37%), Gaps = 40/385 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFHIWHDGD 56 L +Y+ QL K +++RQ + I P HYR +A+ + Sbjct: 85 GCQLAHIRYDGQLMYKENQVRQALARIGKIEGARIHPMIGMDNPWHYRNKAQVPVGEKNG 144 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINA-----------LMIEMMATIRLEPLLRAKLF 105 L F +T E + D + +N L I +LR + Sbjct: 145 KLVAGFFKPRTHEILDADESVIQLPAVNEAVQVVKEICRELGIPAYDEEHHSGVLRHIMV 204 Query: 106 QIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161 + T + ++T L + + L D +++ +H + + KTK+ Sbjct: 205 RYGRKTGELMVVLITRTVELPHRKKLVDLVVSRLPQVKSIVHNINPKRTNVILGEKTKVL 264 Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220 + + +++ + + SF Q N + E L A +++ YCG Sbjct: 265 WGNEVIYDKIG----DIKFAISAPSFYQVNPVQTKVLYEKALEYAELTGSETVIDAYCGI 320 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G SL LA+ +V VEI ++E A+ N A N + NV+ +++ Sbjct: 321 GTISLFLAQKARKVFGVEIVPEAIEDAKRNAALNGITNVEFEAGTAETVIPKWYE----- 375 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILS-T 337 + + VDPPR G D+A + + ++Y+SCNP +L RDL L Sbjct: 376 -------AGNKADVLVVDPPRKGCDEALLKTILEMKPQKVVYVSCNPATLARDLRFLETG 428 Query: 338 THTIERLALFDQFPYTRHMECGVLL 362 + + D FP+T H+E L Sbjct: 429 GYRTVEVQPVDMFPHTTHVEVVTKL 453 >gi|225026465|ref|ZP_03715657.1| hypothetical protein EUBHAL_00714 [Eubacterium hallii DSM 3353] gi|224956204|gb|EEG37413.1| hypothetical protein EUBHAL_00714 [Eubacterium hallii DSM 3353] Length = 382 Score = 299 bits (766), Expect = 4e-79, Method: Composition-based stats. Identities = 87/388 (22%), Positives = 161/388 (41%), Gaps = 43/388 (11%) Query: 2 SGTLLID-QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDG-DDLY 59 G ID YE+QL +K +++ +F I +P HYR + + D + + Sbjct: 12 GGCQYIDLPYEEQLKKKQKNTNKLLKSFGKVKPIIGMKDPWHYRNKVHGVVAGDRHGNCF 71 Query: 60 HIMFDQQTKERMRIDYFMPGSLL---INALMIEMMATIRLEPL--------LRAKLFQID 108 +++ ++ +R+D + + I + +M + ++ P LR L + Sbjct: 72 TGIYENRSHRVIRVDSCLIENQKADEIMNTVTSLMKSFKMRPYNEDTGYGFLRHILVRTG 131 Query: 109 YLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGR-------ANKTKIC 161 Y T Q +VT + + LR I + +K +I Sbjct: 132 YHTGQIMVVLVTA---SPVFPSKNNFVKALRKEHPEITTIIANVNNRNTSMVLGDKQQIL 188 Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220 + Y+++ L +R SF Q N + + A + +++ Y G Sbjct: 189 YGKGYIEDVLCGK----TFRISPKSFYQVNPIQTEVLYNKAIEFAGLTGKERVIDAYSGI 244 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G +V + + V++VE+ +V A +N N V N++ + + +F M +E Sbjct: 245 GTIGMVASDNAGEVISVELNGDAVRDAVFNAKQNKVKNIRFYKDDAGDFMVKMASHKE-- 302 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCRDLSILST- 337 + +F+DPPRSG D + +++ P ++YISCNP++L RDL L+ Sbjct: 303 ----------KADVVFMDPPRSGSDKKFLDSLLRLRPKKVVYISCNPETLARDLKHLTGN 352 Query: 338 THTIERLALFDQFPYTRHMECGVLLVRK 365 + I+ + D FP T H+E LL R+ Sbjct: 353 GYRIKEIQPVDMFPSTGHVEAVCLLSRR 380 >gi|220930233|ref|YP_002507142.1| RNA methyltransferase, TrmA family [Clostridium cellulolyticum H10] gi|220000561|gb|ACL77162.1| RNA methyltransferase, TrmA family [Clostridium cellulolyticum H10] Length = 460 Score = 299 bits (766), Expect = 4e-79, Method: Composition-based stats. Identities = 90/388 (23%), Positives = 155/388 (39%), Gaps = 42/388 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56 + Y+ QL K D + Q + V N I P YR + ++ + D Sbjct: 87 GCAVQHMTYQAQLDFKKDTVLQNIRRIGGIQDVVVNDTIGMENPYKYRNKVQYPVGWDNG 146 Query: 57 DLYHIMFDQQTKERMR---IDYFMPGSLLINALM--------IEMMATIRLEPLLRAKLF 105 ++ ++ ++ + D S I ++ I + + LLR + Sbjct: 147 EITIGFYETRSHNIIDGSLCDIQPDESNKIRDIVRSFCKDAGIAIYDEKTGKGLLRHVMV 206 Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR- 164 + + T++ +V L D + +L + K I + N T I L Sbjct: 207 RKGFRTNEIMVVLVINGDKLLKSD---DLVKKLLEEFPDIKSIILNVNTKN-TNIILGNK 262 Query: 165 ---DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCG 219 Y +T + + SF Q N + E L G+ G+ + +LYCG Sbjct: 263 NICIYGQMYITDFIGSFKFEISPLSFFQVNPIQTEVLYEKALE-YAGLSGNETVFDLYCG 321 Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279 G SL L++ RV+ VE+ ++ AR N N + NV+ + +++ M Sbjct: 322 IGTISLYLSQRAKRVIGVEVVPDAISDARRNAELNGITNVEFLVGEAEKVIPDMYS---- 377 Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCRDLSILST 337 + + VDPPR G D+ + +V+ P I+Y+SCNP +L RDL L+ Sbjct: 378 --------QGVKADVVVVDPPRKGCDEVLLSTLVEMQPQRIVYVSCNPSTLARDLKYLTE 429 Query: 338 -THTIERLALFDQFPYTRHMECGVLLVR 364 ++ + D FP+T H+EC VL+ R Sbjct: 430 HGFEVKEVQPVDMFPWTGHVECVVLMSR 457 >gi|319647052|ref|ZP_08001278.1| YefA protein [Bacillus sp. BT1B_CT2] gi|317390876|gb|EFV71677.1| YefA protein [Bacillus sp. BT1B_CT2] Length = 458 Score = 299 bits (765), Expect = 5e-79, Method: Composition-based stats. Identities = 77/390 (19%), Positives = 150/390 (38%), Gaps = 42/390 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-------VPNLQIFRSEPIHYRMRAEFHIWHD 54 L YE QL K +++ ++ + + +P +YR +A+ + Sbjct: 85 GCQLQHINYEGQLLYKQKQVKDVLERIGKLDLSRITVHPTLGMEDPWNYRNKAQVPVGER 144 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGS-----------LLINALMIEMMATIRLEPLLRAK 103 L + Q++ E + ++ + + I+ R + LR Sbjct: 145 EGGLIAGFYQQRSHEIIDMNECLIQQSENDRVVQAIKEICGKYGIKAYNEERHKGWLRHI 204 Query: 104 LFQIDYLTSQSDQAIVTL---IYHR-LLDDAWRECAIRLRDALHARKYQIQLIGRANKTK 159 + + +T + +T H+ + + ++ + + + ++T Sbjct: 205 MVRYGAVTGEMMVVFITRTNDFPHKAKIVEEITAAFPHVKSIVQNINPKKTNVIFGDETT 264 Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYC 218 + +Y+ + + + + SF Q N + + L A + +++ YC Sbjct: 265 VIWGEEYIYDTIG----GIKFAISARSFYQVNPEQTKVLYDKALEYAELNGEETVIDAYC 320 Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278 G G SL LA+ +V VEI ++E A+ N N + N + ++ E Sbjct: 321 GIGTISLFLAKQAKKVYGVEIVPEAIEDAKRNAELNGIENAEFEVGEAEVVIPKWYEE-- 378 Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILS 336 T+ VDPPR G D+A + + ++Y+SCNP +L RDL +L Sbjct: 379 ----------GIAADTLVVDPPRKGCDEALLRTIIEMKPKRVVYVSCNPGTLARDLRVLE 428 Query: 337 -TTHTIERLALFDQFPYTRHMECGVLLVRK 365 + + D FP+T H+EC VLLV+K Sbjct: 429 DGGYVTREVQPVDMFPHTAHVECCVLLVKK 458 >gi|291527500|emb|CBK93086.1| 23S rRNA m(5)U-1939 methyltransferase [Eubacterium rectale M104/1] Length = 493 Score = 299 bits (765), Expect = 5e-79, Method: Composition-based stats. Identities = 95/412 (23%), Positives = 161/412 (39%), Gaps = 49/412 (11%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ---------VPNLQIFRSEPIHYRMRAEFHIW 52 + YE+QL K +++R ++ + P YR +A+F + Sbjct: 79 GCQIQALSYEKQLEFKNNKVRNNLMRIGGFSEAKLDSKMQPPVGADNPYRYRNKAQFPVG 138 Query: 53 HDGDDLYH-IMFDQQTKERMRIDYF---MPGSLLINALMIEMMATIRLEP--------LL 100 +D D + ++ + ++ +P + I ++ E M + P L+ Sbjct: 139 YDRDGNIVTGFYASRSHNIIPVEDCRLGVPQNKEILDIIKEWMNECGITPYDENTHKGLV 198 Query: 101 RAKLFQIDYLTSQSDQAIV----TLIYHRLLDDAWRECAIRLR--DALHARKYQIQ---- 150 R L + + + Q +V +L R +A RL D + + Y I Sbjct: 199 RHVLIRYGFTSKQIMVCLVINGDSLEAKRRAGNAADILCERLSKIDGMTSISYNINKENT 258 Query: 151 LIGRANKTKICLDRDYVDERL--------TVAGRTLIYRQIENSFTQPNAGINVHMLEWV 202 + KT R Y+++ + T G + Y+ SF Q N + Sbjct: 259 NVILGKKTVCIWGRPYIEDTIHLLSYPDFTPQGTGITYQISPQSFYQVNPKQTEKLYSTA 318 Query: 203 LA-ATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261 LA A ++ +LYCG G SL L++ +V VEI ++E A+ N N + N + Sbjct: 319 LAFAGLTGNENVWDLYCGIGTISLFLSQKAKQVYGVEIVPQAIEDAKNNAKLNGITNAQF 378 Query: 262 VRMSSKEFTQAMRREREFNRLKDIDIHSY------RFKTIFVDPPRSGLDDATVGMVQAY 315 ++E + D S R I VDPPR G D+ + + A Sbjct: 379 FVGKAEEVLPQFYENAKKKENITDDTASTGHTDMLRPDVIVVDPPRKGCDEKCLDTMLAM 438 Query: 316 --PHILYISCNPDSLCRDLSILS-TTHTIERLALFDQFPYTRHMECGVLLVR 364 I+Y+SC+ +L RDL IL + + + FDQF +T H+E LL R Sbjct: 439 SPERIVYVSCDSATLARDLKILCEEKYELMKWQAFDQFSHTTHVESICLLER 490 >gi|323341240|ref|ZP_08081486.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus ruminis ATCC 25644] gi|323091297|gb|EFZ33923.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus ruminis ATCC 25644] Length = 469 Score = 298 bits (764), Expect = 7e-79, Method: Composition-based stats. Identities = 84/379 (22%), Positives = 160/379 (42%), Gaps = 40/379 (10%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ 65 Y QL K +++ ++ + +++ I +P HYR +A+ + DL F + Sbjct: 103 YPAQLKFKQKQIQDLLKKAHLDDIEVAETIGMKDPFHYRNKAQVPVRGTKGDLKTGFFKR 162 Query: 66 QTKERMRIDYFMPGSLLINALMIEM---MATIRLEPL--------LRAKLFQIDYLTSQS 114 + + ++ F+ I+ ++ E+ + LEP +R + +I + + ++ Sbjct: 163 GSHNFLPLENFLIQDERIDEILKEVIKVLNAYELEPYDEERHSGMIRHLMVRIGHYSREA 222 Query: 115 DQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDER 170 IVT L + R + + + + + KTK+ +D++ + Sbjct: 223 MVVIVTKNGRLPHDREIAEKIVAACPDVVSVMQNVNRDRTNVILGQKTKLLFGKDHIKDT 282 Query: 171 LTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNFSLVLAR 229 L L + SF Q N + + + A + ++ YCG G SL LA Sbjct: 283 L----NGLEFDISAQSFYQVNPVQTEKLYQTAIKFANLTGEETAIDAYCGIGTISLSLAE 338 Query: 230 HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHS 289 V VEI + ++E A+ N N ++N++ +++++ + Sbjct: 339 KCRAVYGVEIVEAAIEDAKRNAELNELDNLRFEVGNAEDWMAKWKE------------KG 386 Query: 290 YRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSIL-STTHTIE-RLA 345 R I VDPPR GL ++ + I+Y+SCNP +L RD+ L + +E R+ Sbjct: 387 IRPNVIMVDPPRKGLTESLIESATGMNPDRIVYVSCNPATLVRDIQSLMEKGYHVEGRIQ 446 Query: 346 LFDQFPYTRHMECGVLLVR 364 DQFP T H+EC ++ R Sbjct: 447 PVDQFPQTAHVECVTVMER 465 >gi|42779444|ref|NP_976691.1| RNA methyltransferase [Bacillus cereus ATCC 10987] gi|51316698|sp|Q73EJ5|Y363_BACC1 RecName: Full=Uncharacterized RNA methyltransferase BCE_0363 gi|42735360|gb|AAS39299.1| RNA methyltransferase, TrmA family [Bacillus cereus ATCC 10987] Length = 460 Score = 298 bits (764), Expect = 7e-79, Method: Composition-based stats. Identities = 81/387 (20%), Positives = 152/387 (39%), Gaps = 40/387 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56 L YE QL K ++R +M + + P YR +A+ I Sbjct: 87 GCQLQHLTYEGQLQAKEKQVRDVMQRIGGLSDVPVHPVLGMKNPWVYRNKAQVPIGEREG 146 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEM-----------MATIRLEPLLRAKLF 105 L + Q T + + ++ + + + L+ E+ R + LR + Sbjct: 147 GLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGISAYNEERNKGTLRHVMA 206 Query: 106 QIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161 + +T + +T L + + + ++ + + + +KT + Sbjct: 207 RYGQVTGEIMLVFITRTAELPNKKAIIEEIATKFPEVKSIVQNVNPKRTNVIFGDKTTVL 266 Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220 +Y+ + + + + SF Q N + + L A +++ YCG Sbjct: 267 YGSEYIYDFIG----DIKFAISARSFYQVNPEQTKVLYDKTLEYAKLDGNETVIDAYCGI 322 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G+ SL LA+ +V VEI ++E A+ N A N++ N + ++ +E Sbjct: 323 GSISLFLAQKAKKVYGVEIVPEAIEDAKRNAALNNMTNAEFGVGEAEVVIPKWYKE---- 378 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST- 337 T+ VDPPR G D+A + + ++Y+SCNP +L RDL +L Sbjct: 379 --------GVIADTMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLARDLKVLEEG 430 Query: 338 THTIERLALFDQFPYTRHMECGVLLVR 364 + + + D FP+T H+EC VL+ R Sbjct: 431 GYKTQEVQPVDMFPHTTHVECVVLMSR 457 >gi|307244221|ref|ZP_07526336.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Peptostreptococcus stomatis DSM 17678] gi|306492371|gb|EFM64409.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Peptostreptococcus stomatis DSM 17678] Length = 544 Score = 298 bits (764), Expect = 7e-79, Method: Composition-based stats. Identities = 84/391 (21%), Positives = 155/391 (39%), Gaps = 35/391 (8%) Query: 2 SGTLLID-QYEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFHIWHDG 55 G + + Y++QL K + +++ + I +P YR +A+F + + Sbjct: 80 GGCQIQELDYQKQLDLKTNIVKEDLKRIGGLENVQVFDTIGMEKPFRYRNKAQFPVQMED 139 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGSL-------LINALMIEMMATIRLEPLLRAKLFQID 108 L + +++ + + ID + +I + E +I E + L I Sbjct: 140 GKLKIGFYRKKSHDIIDIDKCLIQDEKNDLIIDIIRKYIEEENISIYDEKSHKGLLRHIV 199 Query: 109 YLTS-QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD---- 163 S Q +V L+ L+D + + I +KT + L Sbjct: 200 TKVGFTSGQVMVVLVATEDRFKNLDRLIESLKDQVEGFTSLVVNIN-KDKTNVILGLKNI 258 Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGN 222 Y + ++ L + SF Q N + L +GD + ++YCG G Sbjct: 259 NKYGNGKIVDNIGDLKFEISPLSFFQVNPIQTDVLYNKALEYADLKEGDRVFDIYCGIGT 318 Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282 SL LA+ + V VEI + +++ AR N N ++N++ ++E + +E Sbjct: 319 ISLFLAQKAEFVYGVEIVEDAIKDARLNAKLNGMDNLEFFVGKAEEVVPEIYKE------ 372 Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILS-TTH 339 + + VDPPR G D+ + + ++Y+SCNP +L RDL L + Sbjct: 373 ------GKKANVVVVDPPRKGCDERVLDTIVEMEPDRVVYVSCNPSTLARDLRYLEDRGY 426 Query: 340 TIERLALFDQFPYTRHMECGVLLVRKPSGWH 370 E++ D FP++ H+E LL + H Sbjct: 427 RCEKVQPVDLFPHSVHVETVALLSKLDVDKH 457 >gi|154147974|ref|YP_001406923.1| tRNA (uracil-5-)-methyltransferase [Campylobacter hominis ATCC BAA-381] gi|262827640|sp|A7I332|TRMA_CAMHC RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|153803983|gb|ABS50990.1| tRNA (uracil-5-)-methyltransferase [Campylobacter hominis ATCC BAA-381] Length = 357 Score = 298 bits (764), Expect = 8e-79, Method: Composition-based stats. Identities = 129/362 (35%), Positives = 209/362 (57%), Gaps = 15/362 (4%) Query: 3 GTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIM 62 G L Y +++ K D L+ F ++IF+S+ ++R AEF IWH+ D+++ M Sbjct: 11 GCNLNLPYNDEISFKTDFLKSEFKEFYQGEIEIFKSDEWNFRNHAEFGIWHEKGDVFYTM 70 Query: 63 FDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122 + ER++I+ I +M +++ +R L+ +LF I+++ ++ D + L+ Sbjct: 71 RG-NSNERVKIETCPKMDKKIVEMMPKLLQNLRENKNLKERLFGIEFIATKFD-FMAILL 128 Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182 YH+ + ++ +L + L I++ R+ + ++ E L + IYR Sbjct: 129 YHKDIF-NIKDDLAKLAEIL-----DIKISARSRGKFL----NFGGEILREKVQNFIYRF 178 Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 ++F Q N +N M+ +VL A K + DLLE+YCG+GNF+L LA F ++LA EI+K Sbjct: 179 NADAFFQSNTKVNEKMILFVLNAVKNGK-DLLEMYCGHGNFTLPLASEFGKILANEISKN 237 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302 S++ AR N + +N+ VRMS+KE A REFNRLKDIDI + F + VDPPR+ Sbjct: 238 SIKNARENSK--NKDNINFVRMSAKELIDAFNGVREFNRLKDIDITDFDFSHVLVDPPRA 295 Query: 303 GLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362 G++ + +Q + +I+YISCNP SL ++L IL TH I + ALFDQF +T H+ECGV+L Sbjct: 296 GIEPEVLDFIQNFKNIIYISCNPASLKQNLQILCETHKITKFALFDQFVHTEHIECGVVL 355 Query: 363 VR 364 + Sbjct: 356 QK 357 >gi|160893502|ref|ZP_02074287.1| hypothetical protein CLOL250_01053 [Clostridium sp. L2-50] gi|156864897|gb|EDO58328.1| hypothetical protein CLOL250_01053 [Clostridium sp. L2-50] Length = 483 Score = 298 bits (763), Expect = 9e-79, Method: Composition-based stats. Identities = 84/389 (21%), Positives = 157/389 (40%), Gaps = 39/389 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-------VPNLQIFRSEPIHYRMRAEFHIWHD 54 +L YE+QL K +++R+ + + EP HYR +A+F + D Sbjct: 107 GCSLQHISYEKQLEYKWNKVRECLRRIGKIENPDTLMEPIYGMKEPYHYRNKAQFPVGRD 166 Query: 55 GDDLYH-IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIR-----------LEPLLRA 102 + + +T + D G+ + + ++ + A + + L+R Sbjct: 167 KNGNIVIGFYAGRTHSIIDSDTCAIGAEVNDQILPIIRAFLTEYNISTYNETTGQGLVRH 226 Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRD---ALHARKYQIQLIGRANKTK 159 L ++ + T + ++ D ++ + K Sbjct: 227 ILTRVGFTTGEVMVCLIVNGKKLPHADELISRLTKISGMTSICLNINTEKTNKILGPTCK 286 Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYC 218 Y+ + + + YR SF Q N + E L A + + ++YC Sbjct: 287 TLWGSPYITDYIG----NVKYRISPLSFYQVNPVQTKVLYEKALEYADLNGEETVWDMYC 342 Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278 G G SL LA+ +V VEI ++ AR N N ++NV+ ++E A+ Sbjct: 343 GIGTISLFLAQKAKQVYGVEIVPQAILDARKNAELNDIHNVEFFTGKAEEVVPAIY---- 398 Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCRDLSILS 336 + + VDPPR G D + +++ P ++Y+SC+P +L RD++IL+ Sbjct: 399 -----EKGGDGSHADVVVVDPPRKGCDKVLLDTLIRMNPKRLVYVSCDPATLARDIAILT 453 Query: 337 -TTHTIERLALFDQFPYTRHMECGVLLVR 364 + +E++A+ DQF +T H+E VLL R Sbjct: 454 PAGYHLEKVAVVDQFGHTGHVESVVLLSR 482 >gi|238925258|ref|YP_002938775.1| hypothetical RNA methyltransferase-like protein [Eubacterium rectale ATCC 33656] gi|238876934|gb|ACR76641.1| hypothetical RNA methyltransferase-like protein [Eubacterium rectale ATCC 33656] Length = 493 Score = 298 bits (763), Expect = 9e-79, Method: Composition-based stats. Identities = 94/412 (22%), Positives = 161/412 (39%), Gaps = 49/412 (11%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ---------VPNLQIFRSEPIHYRMRAEFHIW 52 + YE+QL K +++R ++ + P YR +A+F + Sbjct: 79 GCQIQALSYEKQLEFKNNKVRNNLMRIGGFSEAKLDSKMQPPVGTDNPYRYRNKAQFPVG 138 Query: 53 HDGDDLYH-IMFDQQTKERMRIDYF---MPGSLLINALMIEMMATIRLEP--------LL 100 +D D + ++ + ++ +P + I ++ E M + P L+ Sbjct: 139 YDRDGNIVTGFYASRSHNIIPVEDCRLGVPQNKEILDIIKEWMNECGITPYDENTHKGLV 198 Query: 101 RAKLFQIDYLTSQSDQAIV----TLIYHRLLDDAWRECAIRLR--DALHARKYQIQ---- 150 R L + + + Q +V +L R +A RL D + + Y I Sbjct: 199 RHVLIRYGFTSKQIMVCLVINGDSLEAKRRAGNAADILCERLSKIDGMTSISYNINKENT 258 Query: 151 LIGRANKTKICLDRDYVDERL--------TVAGRTLIYRQIENSFTQPNAGINVHMLEWV 202 + KT R Y+++ + T G + Y+ SF Q N + Sbjct: 259 NVILGKKTVCIWGRPYIEDTIHLLSYPDFTPQGTGITYQISPQSFYQVNPKQTEKLYSTA 318 Query: 203 LA-ATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261 LA A ++ +LYCG G SL L++ +V VEI ++E A+ N N + N + Sbjct: 319 LAFAGLTGNENVWDLYCGIGTISLFLSQKAKQVYGVEIVPQAIEDAKNNAKLNGITNAQF 378 Query: 262 VRMSSKEFTQAMRREREFNRLKDIDIHSY------RFKTIFVDPPRSGLDDATVGMVQAY 315 +++ + D S R I VDPPR G D+ + + A Sbjct: 379 FVGKAEDVLPQFYENAKKKENITDDTASTGHTDMLRPDVIVVDPPRKGCDEKCLDTMLAM 438 Query: 316 --PHILYISCNPDSLCRDLSILS-TTHTIERLALFDQFPYTRHMECGVLLVR 364 I+Y+SC+ +L RDL IL + + + FDQF +T H+E LL R Sbjct: 439 SPERIVYVSCDSATLARDLKILCEEKYELMKWQAFDQFSHTTHVESICLLER 490 >gi|229056263|ref|ZP_04195684.1| Uncharacterized RNA methyltransferase [Bacillus cereus AH603] gi|228721068|gb|EEL72606.1| Uncharacterized RNA methyltransferase [Bacillus cereus AH603] Length = 459 Score = 298 bits (763), Expect = 1e-78, Method: Composition-based stats. Identities = 82/384 (21%), Positives = 161/384 (41%), Gaps = 32/384 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ------IFRSEPIHYRMRAEFHIWHDG 55 L Y++QL +K D + Q + +L+ + P HYR +++ + Sbjct: 88 GCQLQHLDYKEQLNQKRDIVVQAFEKYMNDSLEEKIRPTLGMENPWHYRNKSQLQVGRKD 147 Query: 56 DDLYHIMFDQQTKERMRIDYFMP-------GSLLINALMIEMMATIRLEPLLRAKLFQID 108 + + ++ Q + + + I + M + ++ ++ ++ +I E + + I Sbjct: 148 EKVITGLYKQNSHQLIDISHCMIQHKATNEATKVVRRILEKLNVSIYNEKKQKGLVRTIV 207 Query: 109 YLTS-QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY- 166 T+ Q+ + VTLI + + ++ + + K +Q + + I D+ + Sbjct: 208 TRTAVQTGEVQVTLITTKEELPNKDQFIAEIQKQMPSVKSIMQNVNWRKTSVIFGDKTFK 267 Query: 167 --VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNF 223 E + L + +F Q N V + + A I + +++ YCG G Sbjct: 268 LAGKEVIQETLGDLSFELSARAFFQLNPEQTVVLYDEAKKAAALIGNEKIVDAYCGVGTI 327 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 L LA V +++ ++E A+ N + N K ++++ +E Sbjct: 328 GLWLANDAAEVRGMDVIPEAIEDAKKNAKRHGFTNAKYEAGKAEQWLPKWVKE------- 380 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILSTTHTI 341 +R I VDPPR+G DD + + ++Y+SCNP SL RD+ L ++ + Sbjct: 381 -----GWRPDVIVVDPPRTGCDDKLLETILKVKPKQVVYVSCNPSSLARDVETLMESYEV 435 Query: 342 ERLALFDQFPYTRHMECGVLLVRK 365 E + D FP+T H+E V LVRK Sbjct: 436 EYVQPVDMFPHTAHVENVVKLVRK 459 >gi|282849051|ref|ZP_06258440.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Veillonella parvula ATCC 17745] gi|282581326|gb|EFB86720.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Veillonella parvula ATCC 17745] Length = 505 Score = 298 bits (763), Expect = 1e-78, Method: Composition-based stats. Identities = 75/383 (19%), Positives = 142/383 (37%), Gaps = 34/383 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI-----FRSEPIHYRMRAEFHIWHDGD 56 L YE QL+ K +++ ++ N ++ +P YR + + + Sbjct: 132 GCQLQHITYEGQLSLKTQKVKDVIERIGHQNPELVKPALGPKDPWAYRNKMQMPVGGTKG 191 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSL---LINALMIEMMATIRLEPLL----RAKLFQIDY 109 D+ + + + ++ I ++ +EP + L + Sbjct: 192 DILMGFYAMGSHDIVQGTNCPIQDEGNNSIAQACYQIAKEFDIEPYNEHTGKGILRHVIG 251 Query: 110 LTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD---- 165 QS +V L+ + L + + + + + +T + L Sbjct: 252 RIGQSG-WMVILVTATDNLPHQEKWVKNLTERVPQVETIVHNVN-GKRTNVILGPKNRIL 309 Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNFS 224 Y D +T + L + +SF Q N + + L A + +++ YCG G S Sbjct: 310 YGDGTITDHIKDLRFTLSPHSFFQVNPEQTTVLYDQALKYANLKGEETVIDAYCGTGTIS 369 Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284 L LA V+ +EI +P++ AR N N +N + + + + Sbjct: 370 LFLAHKAKHVIGIEIVEPAINNARENARRNGYDNTEFIVADAA------------VEMPK 417 Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILST-THTI 341 + R I DP R+G + + I+Y+SCNP ++ RD+ IL+ + + Sbjct: 418 LYKAGVRPDVIVFDPIRAGCKEEVLTSAAGMEPKRIVYVSCNPATMARDIEILTHYGYEL 477 Query: 342 ERLALFDQFPYTRHMECGVLLVR 364 E + D FP T H+E LL R Sbjct: 478 EEVQPVDMFPMTAHVEAVALLTR 500 >gi|229165425|ref|ZP_04293209.1| Uncharacterized RNA methyltransferase [Bacillus cereus AH621] gi|228618023|gb|EEK75064.1| Uncharacterized RNA methyltransferase [Bacillus cereus AH621] Length = 459 Score = 298 bits (763), Expect = 1e-78, Method: Composition-based stats. Identities = 82/384 (21%), Positives = 160/384 (41%), Gaps = 32/384 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ------IFRSEPIHYRMRAEFHIWHDG 55 L Y++QL +K D + Q + +L+ + P HYR +++ + Sbjct: 88 GCQLQHLDYKEQLNQKRDIVVQAFEKYMNDSLEEKIRPTLGMENPWHYRNKSQLQVGRKD 147 Query: 56 DDLYHIMFDQQTKERMRIDYFMP-------GSLLINALMIEMMATIRLEPLLRAKLFQID 108 + + ++ Q + + + I + M + ++ ++ ++ +I E + + I Sbjct: 148 EKVITGLYKQNSHQLIDISHCMIQHKATNEATKVVRRILEKLNVSIYNEKKQKGLVRTIV 207 Query: 109 YLTS-QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY- 166 T+ Q+ + VTLI + + ++ + + K +Q + + I D+ + Sbjct: 208 TRTAVQTGEVQVTLITTKEELPNKDQFIAEVQKQMPSVKSIMQNVNWRKTSVIFGDKTFK 267 Query: 167 --VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELYCGNGNF 223 E + L + +F Q N V + + AA +++ YCG G Sbjct: 268 LAGKEVIQETLGDLSFELSARAFFQLNPEQTVVLYDEAKKAAALTGNEKIVDAYCGVGTI 327 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 L LA V +++ ++E A+ N + N K ++++ +E Sbjct: 328 GLWLANDAAEVRGMDVIPEAIEDAKKNAKRHGFTNAKYEAGKAEQWLPKWVKE------- 380 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILSTTHTI 341 +R I VDPPR+G DD + + ++Y+SCNP SL RD+ L ++ + Sbjct: 381 -----GWRPDVIVVDPPRTGCDDKLLETILKVKPKQVVYVSCNPSSLARDVETLMESYEV 435 Query: 342 ERLALFDQFPYTRHMECGVLLVRK 365 E + D FP+T H+E V LVRK Sbjct: 436 EYVQPVDMFPHTAHVENVVKLVRK 459 >gi|163938416|ref|YP_001643300.1| RNA methyltransferase [Bacillus weihenstephanensis KBAB4] gi|229009910|ref|ZP_04167129.1| Uncharacterized RNA methyltransferase [Bacillus mycoides DSM 2048] gi|229131423|ref|ZP_04260319.1| Uncharacterized RNA methyltransferase [Bacillus cereus BDRD-ST196] gi|163860613|gb|ABY41672.1| RNA methyltransferase, TrmA family [Bacillus weihenstephanensis KBAB4] gi|228652007|gb|EEL07948.1| Uncharacterized RNA methyltransferase [Bacillus cereus BDRD-ST196] gi|228751341|gb|EEM01148.1| Uncharacterized RNA methyltransferase [Bacillus mycoides DSM 2048] Length = 459 Score = 298 bits (762), Expect = 1e-78, Method: Composition-based stats. Identities = 82/384 (21%), Positives = 160/384 (41%), Gaps = 32/384 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ------IFRSEPIHYRMRAEFHIWHDG 55 L Y++QL +K D + Q + +L+ + P HYR +++ + Sbjct: 88 GCQLQHLDYKEQLNQKRDIVVQAFEKYMNNSLEEKIRPTLGMENPWHYRNKSQLQVGRKD 147 Query: 56 DDLYHIMFDQQTKERMRIDYFMP-------GSLLINALMIEMMATIRLEPLLRAKLFQID 108 + + ++ Q + + + I + M + ++ ++ ++ +I E + + I Sbjct: 148 EKVITGLYKQNSHQLIDISHCMIQHKATNEATKVVRRILEKLNVSIYNEKKQKGLVRTIV 207 Query: 109 YLTS-QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY- 166 T+ Q+ + VTLI + + ++ + + K +Q + + I D+ + Sbjct: 208 TRTAVQTGEVQVTLITTKEELPNKDQFIAEVQKQMPSVKSIMQNVNWRKTSVIFGDKTFK 267 Query: 167 --VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELYCGNGNF 223 E + L + +F Q N V + + AA +++ YCG G Sbjct: 268 LAGKEVIQETLGDLSFELSARAFFQLNPEQTVVLYDEAKKAAALTGNEKIVDAYCGVGTI 327 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 L LA V +++ ++E A+ N + N K ++++ +E Sbjct: 328 GLWLANDAAEVRGMDVIPEAIEDAKKNAKRHGFTNAKYEAGKAEQWLPKWVKE------- 380 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILSTTHTI 341 +R I VDPPR+G DD + + ++Y+SCNP SL RD+ L ++ + Sbjct: 381 -----GWRPDVIVVDPPRTGCDDKLLETILKVKPKQVVYVSCNPSSLARDVETLMESYEV 435 Query: 342 ERLALFDQFPYTRHMECGVLLVRK 365 E + D FP+T H+E V LVRK Sbjct: 436 EYVQPVDMFPHTAHVENVVKLVRK 459 >gi|157691441|ref|YP_001485903.1| TrmA family RNA methyltransferase [Bacillus pumilus SAFR-032] gi|157680199|gb|ABV61343.1| TrmA family RNA methyltransferase [Bacillus pumilus SAFR-032] Length = 465 Score = 298 bits (762), Expect = 1e-78, Method: Composition-based stats. Identities = 81/390 (20%), Positives = 152/390 (38%), Gaps = 42/390 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN-------LQIFRSEPIHYRMRAEFHIWHD 54 + YE QL K +++ ++ + + +P +YR +A+ + Sbjct: 86 GCQIQHMSYEGQLLFKQKQVKDVLERIGKLDMSRVKVHPVLGMEDPWNYRNKAQVPVGER 145 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGS-----------LLINALMIEMMATIRLEPLLRAK 103 L + Q+T E + ++ + + A I+ R + LR Sbjct: 146 EGGLVAGFYQQRTHEIIDMEKCLIQQSENDEVVQAVKEICQAFGIKAYNEERHKGWLRHV 205 Query: 104 LFQIDYLTSQSDQAIVTLI----YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTK 159 + + T + VT + + + +R + + + ++T Sbjct: 206 MVRYGIATGEMMVVFVTRTAEFPQKQQVIEQIIARFPHIRSIVQNVNSKKTNVIFGDETT 265 Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYC 218 + +Y+ + + + + SF Q N + + L A + +++ YC Sbjct: 266 VLWGEEYIYDTIG----DIKFAISARSFYQVNPAQTKMLYDKALEYAELQGEETVIDAYC 321 Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278 G G SL LA+ RV VEI ++E A+ N A N +NNV+ ++ +E Sbjct: 322 GIGTISLFLAQKAGRVYGVEIVPEAIEDAKRNAALNGINNVEFAVGEAETVIPNWYKE-- 379 Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILS 336 + T+ VDPPR G D+A + + ++Y+SCNP +L RDL IL Sbjct: 380 ----------GIKADTLVVDPPRKGCDEALLDTILKMKPKRVVYVSCNPGTLARDLRILE 429 Query: 337 -TTHTIERLALFDQFPYTRHMECGVLLVRK 365 + E + D FP+T H+EC L+ + Sbjct: 430 DGGYVTEEVQPVDMFPHTSHVECVAQLILR 459 >gi|148926533|ref|ZP_01810215.1| tRNA (uracil-5-)-methyltransferase [Campylobacter jejuni subsp. jejuni CG8486] gi|145845227|gb|EDK22321.1| tRNA (uracil-5-)-methyltransferase [Campylobacter jejuni subsp. jejuni CG8486] Length = 380 Score = 298 bits (762), Expect = 1e-78, Method: Composition-based stats. Identities = 133/352 (37%), Positives = 206/352 (58%), Gaps = 8/352 (2%) Query: 14 LAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRI 73 L EK +++ F + ++F S+ HYR RAE +H+ D L++ MFD + K++ I Sbjct: 35 LDEKHSFIKKYFKEFYTKDFKLFASKDKHYRTRAELSFYHENDTLFYAMFDPKNKKKYII 94 Query: 74 DYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRE 133 +Y I A M +++ +R + L+ KLF +++LT++ + + VTL+YH+ ++D + Sbjct: 95 EYLDFADEKICAFMPKLLEYLRQDNKLKEKLFGVEFLTTKQELS-VTLLYHKNIED-IKS 152 Query: 134 CAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAG 193 L + LH I LI R+ K+ + + + L + GR + Y + F QPN Sbjct: 153 NLENLSNNLH-----INLIARSKGKKLIFKTENLRQTLNIQGRKIFYEFNNDCFIQPNTT 207 Query: 194 INVHMLEWVLA-ATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIA 252 IN M+ WV + DLLELYCG GNF+L LA F ++LA EI+K ++ A N Sbjct: 208 INEKMITWVCEILNTQKRMDLLELYCGYGNFTLALAPFFFKILATEISKSNINFALKNCE 267 Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312 N+ N+ R+SS+E + A+++EREF RLKDI + + F + VDPPR+GLD + + ++ Sbjct: 268 LNNTTNIHFARLSSEELSLAIKKEREFFRLKDIRLDDFNFSHVLVDPPRAGLDKSVIDLI 327 Query: 313 QAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 + Y +I+YISCNP +L +L LS TH E ALFDQF T H+ECGV L + Sbjct: 328 KKYENIIYISCNPITLKENLKELSLTHRAEEFALFDQFVNTPHLECGVFLSK 379 >gi|269797777|ref|YP_003311677.1| RNA methyltransferase, TrmA family [Veillonella parvula DSM 2008] gi|269094406|gb|ACZ24397.1| RNA methyltransferase, TrmA family [Veillonella parvula DSM 2008] Length = 457 Score = 298 bits (762), Expect = 1e-78, Method: Composition-based stats. Identities = 77/390 (19%), Positives = 147/390 (37%), Gaps = 42/390 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAF-----QVPNLQIFRSEPIHYRMRAEFHIWHDGD 56 L YE QL+ K +++ ++ + + P YR + + + Sbjct: 84 GCQLQHITYEGQLSLKTQKVKDVIERIAHQNPDLVKPTLGPKNPWAYRNKMQMPVGGTKG 143 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSL---LINALMIEMMATIRLEPL--------LRAKLF 105 D+ + + + ++ +I ++ +EP LR + Sbjct: 144 DIQMGFYAMGSHDIVQGTNCPIQDEGNNIIAQACYQIAKEFDIEPYDEHTGKGVLRHVIG 203 Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD 165 +I S +VT H + W E +L + + + + + +T + L Sbjct: 204 RIGQ--SGWMIILVTATEHLPHQEKWVE---KLTERVPQVETIVHNVN-GKRTNVILGPK 257 Query: 166 ----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGN 220 Y D +T + L + +SF Q N + + LA + +++ YCG Sbjct: 258 NSVLYGDGTITDHIKDLRFTLSPHSFFQVNPEQTTVLYDQALAYADLKGTEIVIDAYCGT 317 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G SL LA V+ +EI +P++ AR N N +N + + + Sbjct: 318 GTISLFLAYKAKHVIGIEIVEPAITNARENARRNGYDNTEFIVADAA------------V 365 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILST- 337 + + R I DP R+G + + + I+Y+SCNP ++ RD+ IL+ Sbjct: 366 EIPKLYKAGVRPDVIVFDPIRAGCKEEVLTSAASMEPKRIVYVSCNPATMARDIEILTHY 425 Query: 338 THTIERLALFDQFPYTRHMECGVLLVRKPS 367 + ++ + D FP T H+E LL R + Sbjct: 426 GYELKEVQPVDMFPMTAHVEAVALLTRSKA 455 >gi|304406301|ref|ZP_07387958.1| RNA methyltransferase, TrmA family [Paenibacillus curdlanolyticus YK9] gi|304344885|gb|EFM10722.1| RNA methyltransferase, TrmA family [Paenibacillus curdlanolyticus YK9] Length = 513 Score = 297 bits (761), Expect = 2e-78, Method: Composition-based stats. Identities = 89/401 (22%), Positives = 143/401 (35%), Gaps = 57/401 (14%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ--------VPNLQIFRSEPIHYRMRAEFHIW- 52 L YE QL K + + + + I EP YR +A+ I Sbjct: 127 GCQLQHMSYEAQLRWKRQHVVDNLTRIGKLNVDVDIIVHPTIGMDEPWRYRNKAQVPIGM 186 Query: 53 -------HDGDDLYHIMFDQQTKERMRIDYFMPGSL-------LINALMIEMMATIRLEP 98 L + Q + + +D + I + E+ T E Sbjct: 187 ALADIEDGAAGGLIGGFYAQGSHRIIDMDACLIQHERNDEVVRQIKRIGTELGITAYDEE 246 Query: 99 ----LLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIG- 153 LLR + + ++T + +VT H W +R AL +Q + Sbjct: 247 SGRGLLRHVVVRTGFVTGELMVVLVTNGTHIPNKTEWIAG---IRAALPDVNSIVQNVNT 303 Query: 154 ------RANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATK 207 ++T+ D + + L + + SF Q N V + + Sbjct: 304 RDTNVIFGDETRTLWGSDVIYDEL----DGIRFAISARSFYQVNPSQTVALYRKAVDYAG 359 Query: 208 GIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266 + +++ YCG G SL LAR RV VE+ ++E A+ N N + N + S Sbjct: 360 LTGAETVIDAYCGIGTISLFLARKAGRVYGVEVVPEAIEDAKRNAELNGIANAEFEAGLS 419 Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCN 324 + R E I VDPPR G D A + + ++Y+SCN Sbjct: 420 EVVIPRWREE------------GIAADVIVVDPPRKGCDAALLDTIIRMKPERVVYVSCN 467 Query: 325 PDSLCRDLSILS-TTHTIERLALFDQFPYTRHMECGVLLVR 364 P +L RDL +L + + D FP+T H+E LLV+ Sbjct: 468 PSTLARDLRVLEDGGYRTVEVTPVDMFPWTVHVENVALLVK 508 >gi|228913060|ref|ZP_04076699.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228846465|gb|EEM91478.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 459 Score = 297 bits (761), Expect = 2e-78, Method: Composition-based stats. Identities = 81/388 (20%), Positives = 151/388 (38%), Gaps = 40/388 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56 L YE QL K ++R +M + + P YR +A+ I Sbjct: 87 GCQLQHLTYEGQLQAKEKQVRDVMQRIGGLGDVPVHPVLGMKNPWVYRNKAQVPIGEREG 146 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEM-----------MATIRLEPLLRAKLF 105 L + Q T + + ++ + + + L+ E+ R + LR + Sbjct: 147 GLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGISAYNEERNKGTLRHVMA 206 Query: 106 QIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161 + +T + +T L + + + ++ + + + +KT + Sbjct: 207 RYGQVTGEIMLVFITRTAELPNKKAIIEEIAAKFPEVKSIVQNVNPKRTNVIFGDKTTVL 266 Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220 +Y+ + + + + SF Q N + + L A +++ YCG Sbjct: 267 YGSEYIYDFIG----DIKFAISARSFYQVNPEQTKVLYDKTLEYAKLDGNETVIDAYCGI 322 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G+ SL LA+ +V VEI ++E A+ N A N++ N + ++ +E Sbjct: 323 GSISLFLAQKAKKVYGVEIVPEAIEDAKRNAALNNMTNAEFGVGEAEVVIPKWYKE---- 378 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST- 337 T+ VDPPR G D+A + + ++Y+SCNP +L RDL +L Sbjct: 379 --------GVIADTMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLARDLKVLEEG 430 Query: 338 THTIERLALFDQFPYTRHMECGVLLVRK 365 + + + D FP+T H+EC LL K Sbjct: 431 GYKTQEVQPVDMFPHTTHVECVTLLELK 458 >gi|315303628|ref|ZP_07874164.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria ivanovii FSL F6-596] gi|313628001|gb|EFR96598.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria ivanovii FSL F6-596] Length = 453 Score = 297 bits (760), Expect = 2e-78, Method: Composition-based stats. Identities = 78/383 (20%), Positives = 148/383 (38%), Gaps = 38/383 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWHDGDD 57 +L YE QL K +++ + M ++Q+ P YR +++ + Sbjct: 84 GCSLQHLSYEGQLKFKRNQVEETMKRIGNLDVQVKETLGMENPWRYRNKSQVPVGFVNGK 143 Query: 58 LYHIMFDQQTKERMRIDYFMP-----------GSLLINALMIEMMATIRLEPLLRAKLFQ 106 L + +++ E + + + ++ E + +R + + Sbjct: 144 LTAGFYQKRSHEIIDMTTCLIHNEQGDYAVQKAREILAKYGTEPYNEKTGKGDIRHIMTR 203 Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWREC---AIRLRDALHARKYQIQLIGRANKTKICLD 163 + + T Q +VT + + L + Q + N+TK Sbjct: 204 VAHTTGQLMLVLVTNKDKIPFKEDIIRDLTEQLALTSIVQNINPQKTNVIFGNRTKTLWG 263 Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELYCGNGN 222 +D +++ + + + SF Q N + + L AA + +++ YCG G+ Sbjct: 264 KDIIEDSIH----GIRFAISARSFYQVNPLQTEVLYQQALEAAELTGEETVIDAYCGIGS 319 Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282 SL LA+ V VEI +++ AR N A N +NN ++E A + Sbjct: 320 ISLCLAKKAKHVYGVEIVDQAIQDARANAALNELNNTTFETGKAEEVIPAWYKA------ 373 Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSIL-STTH 339 + VDPPR G D+ + + A ++Y+SCNP +L RD+ IL + Sbjct: 374 ------GIIADVLVVDPPRKGCDEKLLQTILAMKPKKVVYVSCNPGTLARDMQILTEGGY 427 Query: 340 TIERLALFDQFPYTRHMECGVLL 362 +++ D FP T H+E +L Sbjct: 428 EAKQVQPVDMFPMTTHIEAVTVL 450 >gi|229171271|ref|ZP_04298861.1| Uncharacterized RNA methyltransferase [Bacillus cereus MM3] gi|228612228|gb|EEK69460.1| Uncharacterized RNA methyltransferase [Bacillus cereus MM3] Length = 459 Score = 297 bits (760), Expect = 2e-78, Method: Composition-based stats. Identities = 84/384 (21%), Positives = 160/384 (41%), Gaps = 32/384 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ------IFRSEPIHYRMRAEFHIWHDG 55 L Y++QL +K D + Q + +L+ + P HYR +++ + Sbjct: 88 GCQLQHLDYKEQLNQKRDIVVQAFEKYMNNSLEEKIRPTLGMENPWHYRNKSQLQVGRKD 147 Query: 56 DDLYHIMFDQQTKERMRIDYFMP-------GSLLINALMIEMMATIRLEPLLRAKLFQID 108 + + ++ Q + + + I + M + ++ ++ ++ +I E + + I Sbjct: 148 EKVITGLYKQNSHQLIDIAHCMIQHKATNEATKVVRRILEKLNVSIYNEKKQKGLVRTIV 207 Query: 109 YLTS-QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY- 166 T+ Q+ + VTLI + + ++ + A K +Q + + I D+ + Sbjct: 208 TRTAVQTGEVQVTLITTKEELPNKDQFIAEVQKQMPAVKSIMQNVNWRKTSVIFGDKTFK 267 Query: 167 --VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELYCGNGNF 223 E + L + +F Q N V + + AA +++ YCG G Sbjct: 268 LAGKEVIQETLGDLSFELSARAFFQLNPEQTVVLYDEAKKAAALTGDEKIVDAYCGVGTI 327 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 L LA V +++ ++E AR N + N K ++++ +E Sbjct: 328 GLWLANDAAEVRGMDVIPEAIEDARKNAKRHGFTNTKYEAGKAEQWLPKWVKE------- 380 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILSTTHTI 341 +R I VDPPR+G DD + + ++Y+SCNP SL RD+ L ++ + Sbjct: 381 -----GWRPDVIVVDPPRTGCDDKLLETILKVKPKQVVYVSCNPSSLARDVQALMKSYEV 435 Query: 342 ERLALFDQFPYTRHMECGVLLVRK 365 E + D FP+T H+E V LVRK Sbjct: 436 EYVQPVDMFPHTAHVENVVKLVRK 459 >gi|295702483|ref|YP_003595558.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus megaterium DSM 319] gi|294800142|gb|ADF37208.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus megaterium DSM 319] Length = 457 Score = 297 bits (760), Expect = 2e-78, Method: Composition-based stats. Identities = 76/388 (19%), Positives = 153/388 (39%), Gaps = 40/388 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-VPNLQI----FRSEPIHYRMRAEFHIWHDGD 56 L YE QL K +++ +M +P++ + ++P YR +A+ + Sbjct: 86 GCQLQHVSYEGQLQFKQKQVKDVMARIGHLPDVPVHSTLGMNDPWRYRNKAQVPVAEREG 145 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-----------LRAKLF 105 L + Q++ + + +D + + ++ + + + LR + Sbjct: 146 GLVAGFYQQRSHDIINMDACLIQQQANDDVVQAVKSICEKHGVSAYQEQKHKGSLRHIMA 205 Query: 106 QIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161 + +T + IVT L + + + E ++ + + + N+T + Sbjct: 206 RYGLVTGEIMVVIVTRTAELPNKKRIIEDIIEAVPNVKSIVQNVNSKRTNVILGNQTNVL 265 Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220 +Y+ + + + + SF Q N + + L A + +++ YCG Sbjct: 266 WGEEYIYDYIG----DVKFAISAKSFYQVNPEQTKVLYDKALEYADLTGEETVIDAYCGI 321 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G SL LA+ +V VEI ++E A+ N N ++N + ++ + Sbjct: 322 GTISLFLAQKAKKVYGVEIVPEAIEDAKRNAELNGIHNAEFEVGEAEVVIPNWYK----- 376 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST- 337 + I VDPPR G D+A + + ++Y+SC P +L RDL+IL Sbjct: 377 -------QGIKADVIVVDPPRKGCDEALLNTIIDMKPKKVVYVSCGPATLARDLAILEKG 429 Query: 338 THTIERLALFDQFPYTRHMECGVLLVRK 365 + + D FP+T H+E +L K Sbjct: 430 GYETVEVQPVDMFPHTTHVENVAVLTLK 457 >gi|313898104|ref|ZP_07831643.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium sp. HGF2] gi|312957132|gb|EFR38761.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium sp. HGF2] Length = 444 Score = 297 bits (760), Expect = 2e-78, Method: Composition-based stats. Identities = 89/380 (23%), Positives = 153/380 (40%), Gaps = 30/380 (7%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPI-HYRMRAEFHIWHDGD 56 L Y +QL K +++ +M ++++ + +YR + + + + Sbjct: 79 GCQLQHMSYAEQLRFKKQKVQDVMQRIAHLDIEVWDVLGMQDCYTNYRNKGQIPVGVEKG 138 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIE---MMATIRLEPLLRAKLFQIDYLTSQ 113 + + + D + S INA++ E + + L R L + + Sbjct: 139 KTVTGFYRINSNAIIDTDTCLIQSERINAVLQEMRKLFEKYQNAKLFRHLLIKHAF---S 195 Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD---YVDER 170 SD+ +V I +E L AL K I + + I D++ + + Sbjct: 196 SDEVMVVWIVRSFQIPHGKEMVQELTAALPFVKSVILNLNVRDDNVILGDKEQLLFGERA 255 Query: 171 LTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNFSLVLAR 229 +T + L + SF Q N + L A + +L+LYCG G S+ LA+ Sbjct: 256 ITDSIHDLKFSISSKSFYQVNPRQTEILYGKALEFAKLTGKETVLDLYCGVGTISMFLAQ 315 Query: 230 HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHS 289 V +EI ++ AR N A N + N++ V + ++ + + Sbjct: 316 RAKHVTGIEIVPQAIRDARKNAALNGIANIEFVCSDAADYAKKLCE------------QG 363 Query: 290 YRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCRDLSILST-THTIERLAL 346 I VDPPR G D T+ MV P I+Y+SC+P +L RDL +L + E + Sbjct: 364 AHPDVIVVDPPRKGCDAQTIDSMVMMQPKRIVYVSCDPGTLARDLKLLEEKGYRTEIVQP 423 Query: 347 FDQFPYTRHMECGVLLVRKP 366 D FP+T H+E LL RK Sbjct: 424 LDMFPFTHHVETVCLLSRKD 443 >gi|229015810|ref|ZP_04172786.1| Uncharacterized RNA methyltransferase [Bacillus cereus AH1273] gi|229022017|ref|ZP_04178573.1| Uncharacterized RNA methyltransferase [Bacillus cereus AH1272] gi|228739273|gb|EEL89713.1| Uncharacterized RNA methyltransferase [Bacillus cereus AH1272] gi|228745469|gb|EEL95495.1| Uncharacterized RNA methyltransferase [Bacillus cereus AH1273] Length = 459 Score = 297 bits (760), Expect = 2e-78, Method: Composition-based stats. Identities = 83/384 (21%), Positives = 161/384 (41%), Gaps = 32/384 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ------IFRSEPIHYRMRAEFHIWHDG 55 L Y++QL +K D + Q + +L+ + P HYR +++ + Sbjct: 88 GCQLQHLDYKEQLNQKRDIVVQAFEKYMNNSLEEKIRPTLGMENPWHYRNKSQLQVGRKD 147 Query: 56 DDLYHIMFDQQTKERMRIDYFMP-------GSLLINALMIEMMATIRLEPLLRAKLFQID 108 + + ++ Q + + + I + M + ++ ++ ++ +I E + + I Sbjct: 148 EKVITGLYKQNSHQLIDISHCMIQHKATNEATKVVRRILEKLNVSIYNEKKQKGLVRTIV 207 Query: 109 YLTS-QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY- 166 T+ Q+ + VTLI + + ++ + A K +Q + + I D+ + Sbjct: 208 TRTAVQTGEVQVTLITTKEELPNKEQFIAEVQKQMPAVKSIMQNVNWRKTSVIFGDKTFK 267 Query: 167 --VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELYCGNGNF 223 E + L + +F Q N V + + AA +++ YCG G Sbjct: 268 LAGKEVIQETLGDLSFELSARAFFQLNPEQTVVLYDEAKKAAALTGNEKIVDAYCGVGTI 327 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 L LA V +++ ++E A+ N + N K ++++ +E Sbjct: 328 GLWLANDAAEVRGMDVIPEAIEDAKKNAKRHGFTNTKYEAGKAEQWLPKWVKE------- 380 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILSTTHTI 341 +R I VDPPR+G DD + + ++Y+SCNP SL RD++ L ++ + Sbjct: 381 -----GWRPDVIVVDPPRTGCDDKLLETILKVKPKQVVYVSCNPSSLARDVNALMQSYEV 435 Query: 342 ERLALFDQFPYTRHMECGVLLVRK 365 E + D FP+T H+E V LVRK Sbjct: 436 EYVQPVDMFPHTAHVENVVKLVRK 459 >gi|52079174|ref|YP_077965.1| putative RNA methyltransferase YefA [Bacillus licheniformis ATCC 14580] gi|52784541|ref|YP_090370.1| YefA [Bacillus licheniformis ATCC 14580] gi|52002385|gb|AAU22327.1| putative RNA methyltransferase YefA [Bacillus licheniformis ATCC 14580] gi|52347043|gb|AAU39677.1| YefA [Bacillus licheniformis ATCC 14580] Length = 462 Score = 297 bits (760), Expect = 2e-78, Method: Composition-based stats. Identities = 75/392 (19%), Positives = 148/392 (37%), Gaps = 42/392 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-------VPNLQIFRSEPIHYRMRAEFHIWHD 54 L YE QL K +++ ++ + + +P +YR +A+ + Sbjct: 85 GCQLQHINYEGQLLYKQKQVKDVLERIGKLDLSRITVHPTLGMEDPWNYRNKAQVPVGER 144 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGS-----------LLINALMIEMMATIRLEPLLRAK 103 L + Q++ E + ++ + + I+ R + LR Sbjct: 145 EGGLIAGFYQQRSHEIIDMNECLIQQSENDRVVQAIKEICGKYGIKAYNEERHKGWLRHI 204 Query: 104 LFQIDYLTSQSDQAIVTL---IYHR-LLDDAWRECAIRLRDALHARKYQIQLIGRANKTK 159 + + +T + +T H+ + + ++ + + + ++T Sbjct: 205 MVRYGAVTGEMMVVFITRTNDFPHKAKIVEEITAAFPHVKSIVQNINPKKTNVIFGDETT 264 Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYC 218 + +Y+ + + + + SF Q N + + L A + +++ YC Sbjct: 265 VIWGEEYIYDTIG----GIKFAISARSFYQVNPEQTKVLYDKALEYAELNGEETVIDAYC 320 Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278 G G SL LA+ +V VEI ++E A+ N N + N + ++ E Sbjct: 321 GIGTISLFLAKQAKKVYGVEIVPEAIEDAKRNAELNGIENAEFEVGEAEVVIPKWYEE-- 378 Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILS 336 T+ VDPPR G D+A + + ++Y+SCNP +L RDL +L Sbjct: 379 ----------GIAADTLVVDPPRKGCDEALLRTIIEMKPKRVVYVSCNPGTLARDLRVLE 428 Query: 337 -TTHTIERLALFDQFPYTRHMECGVLLVRKPS 367 + + D FP+T H+EC LV K + Sbjct: 429 DGGYVTREVQPVDMFPHTSHVECVTKLVLKGA 460 >gi|194016025|ref|ZP_03054640.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus pumilus ATCC 7061] gi|194012380|gb|EDW21947.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus pumilus ATCC 7061] Length = 460 Score = 296 bits (759), Expect = 3e-78, Method: Composition-based stats. Identities = 83/388 (21%), Positives = 152/388 (39%), Gaps = 42/388 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN-------LQIFRSEPIHYRMRAEFHIWHD 54 + YE QL K +++ ++ + + +P +YR +A+ I Sbjct: 86 GCQIQHMSYEGQLLFKQKQVKDVLERIGKLDMSRVKVHPVLGMEDPWNYRNKAQVPIGER 145 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGS-----------LLINALMIEMMATIRLEPLLRAK 103 L + Q+T E + ++ + + NA I+ R + LR Sbjct: 146 EGGLVAGFYQQRTHEIIDMEKCLIQQSENDEVVQAVKDICNAFGIKAYNEERHKGWLRHV 205 Query: 104 LFQIDYLTSQSDQAIVTLI----YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTK 159 + + T + VT + + + +R + + + ++T Sbjct: 206 MVRYGIATGEMMVVFVTRTADFPQKQQVIEQIIARFPHVRSIVQNVNSKKTNVIFGDETT 265 Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYC 218 + +Y+ + + + + SF Q N + + L + + +++ YC Sbjct: 266 VLWGEEYIYDTIG----DIKFAISARSFYQVNPAQTKVLYDKALEYAELQGEEIVIDAYC 321 Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278 G G SL LA+ RV VEI ++E A+ N A N +NNV+ ++ +E Sbjct: 322 GIGTISLFLAQKAGRVYGVEIVPEAIEDAKRNAALNEINNVEFAVGEAETVIPNWYKE-- 379 Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILS 336 + T+ VDPPR G D+A + + ++Y+SCNP +L RDL IL Sbjct: 380 ----------GIKADTLVVDPPRKGCDEALLDTILKMKPKRVVYVSCNPGTLARDLRILE 429 Query: 337 -TTHTIERLALFDQFPYTRHMECGVLLV 363 + E + D FP+T H+EC LV Sbjct: 430 DGGYVTEEVQPVDMFPHTAHVECVASLV 457 >gi|225174261|ref|ZP_03728260.1| RNA methyltransferase, TrmA family [Dethiobacter alkaliphilus AHT 1] gi|225170046|gb|EEG78841.1| RNA methyltransferase, TrmA family [Dethiobacter alkaliphilus AHT 1] Length = 455 Score = 296 bits (759), Expect = 3e-78, Method: Composition-based stats. Identities = 89/390 (22%), Positives = 154/390 (39%), Gaps = 45/390 (11%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWHDGDD 57 L QYE+QL K + + + ++ + +P YR +A+ + + Sbjct: 85 GCQLQHLQYEEQLKLKQNIVSDTLKRIGGIDIPVLATMGMQDPWRYRNKAQVPVGLENGT 144 Query: 58 LYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLFQ 106 + +++++ + + ++ L + + + L+R L + Sbjct: 145 VRAGFYEKRSHNIIDLKCCHIQHPANDNVVHTVRNILQQLSVPVYREREHKGLVRHILAR 204 Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGR-------ANKTK 159 + T + AIVT R L +E +L+D++ +Q I N+ Sbjct: 205 TSFTTEEVLVAIVTN--GRQL-PKKQEVVQQLKDSIPNLCGIVQNINTRKGNTILGNEEL 261 Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYC 218 L R ++ E+L L + SF Q N + L A + +LYC Sbjct: 262 TLLGRPWLREKLG----NLHFHVSARSFFQVNPLQTEVLYNKALEYANLSGTETVFDLYC 317 Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278 G G SL LAR +V+ VE + +V AR N N++ N + +++ + + Sbjct: 318 GIGTISLFLARKAAKVVGVESVEAAVHDARENANVNNIKNAEFHTGTAETVVPRLFK--- 374 Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILS 336 Y + VDPPR G D+ + + A I+Y+SCNP +L RDL L Sbjct: 375 ---------QGYHADVVVVDPPRKGCDEKLLATIAAMRPQRIVYVSCNPATLARDLKYLQ 425 Query: 337 T-THTIERLALFDQFPYTRHMECGVLLVRK 365 + D FP+T H+E VLL RK Sbjct: 426 QNGYNPIEAQPVDMFPHTSHVETVVLLERK 455 >gi|309777091|ref|ZP_07672057.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Erysipelotrichaceae bacterium 3_1_53] gi|308915161|gb|EFP60935.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Erysipelotrichaceae bacterium 3_1_53] Length = 441 Score = 296 bits (759), Expect = 3e-78, Method: Composition-based stats. Identities = 89/378 (23%), Positives = 154/378 (40%), Gaps = 29/378 (7%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWHDGDD 57 L Y +QL K +++ ++ ++++ E HYR + + + D Sbjct: 79 GCQLQHMSYGEQLRFKKQKVQDVIQRIAHLDVEVQDVLGMQEYTHYRNKGQIPVGMDKGK 138 Query: 58 LYHIMFDQQTKERMRIDYFMPGSLLINALMIE---MMATIRLEPLLRAKLFQIDYLTSQS 114 + + + D + S IN ++ E ++ T + R L + + S Sbjct: 139 TVTGFYRINSNSIIDTDTCLIQSERINEVLQEMRRLLQTYNNAKVFRHLLIKHAF---SS 195 Query: 115 DQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD---YVDERL 171 D+ +V I H +E L +AL K I + + I +++ Y + + Sbjct: 196 DEVMVVWIVHSFQIPHEKEMVRELSEALPFVKSIIVNLNQRTDNVILGEKEKLLYGERVI 255 Query: 172 TVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNFSLVLARH 230 + L + SF Q N + L A + +L+LYCG G S+ LA+ Sbjct: 256 VDSIHDLKFSISSKSFYQVNPKQTEVLYGKALEFAQLTGKETVLDLYCGVGTISMFLAQQ 315 Query: 231 FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY 290 V +EI +++ AR N A N + N++ V + + + + Sbjct: 316 ARHVTGIEIVPQAIQDARKNAALNGIANIEFVCSDAASYAKKLCE------------QGM 363 Query: 291 RFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCRDLSIL-STTHTIERLALF 347 I VDPPR G D + MV P I+Y+SC+P +L RDL +L + E + Sbjct: 364 HLDVIVVDPPRKGCDAEAIESMVMMQPKRIVYVSCDPGTLARDLKLLKEKGYHTEIVQPV 423 Query: 348 DQFPYTRHMECGVLLVRK 365 + FP+T H+E VLL RK Sbjct: 424 EMFPFTHHVETVVLLCRK 441 >gi|303231827|ref|ZP_07318541.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Veillonella atypica ACS-049-V-Sch6] gi|302513505|gb|EFL55533.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Veillonella atypica ACS-049-V-Sch6] Length = 487 Score = 296 bits (759), Expect = 3e-78, Method: Composition-based stats. Identities = 79/389 (20%), Positives = 149/389 (38%), Gaps = 40/389 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56 L YE QL+ K +++ ++ + + EP YR + + + Sbjct: 114 GCQLQHITYEGQLSLKTQKVKDVIERIGHQNPDLVKPALGPKEPWAYRNKMQMPVGGARG 173 Query: 57 DLYHIMFDQQTKERMRIDYFMP---GSLLINALMIEMMATIRLEPL--------LRAKLF 105 D+ + + + ++ G+ I + ++ + +EP LR + Sbjct: 174 DIQMGFYAMGSHDIVQGTNCPIQDDGNNRIAQICYDIAKELDVEPYDEHTGKGVLRHVIG 233 Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD 165 +I S +VT H + W E R+ + + + + + I + Sbjct: 234 RIGQ--SGWMVILVTATEHLPHQEEWVE---RITNRIPQVETIVHNVNSKRTNVILGPTN 288 Query: 166 YV---DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNG 221 YV D +T + L + +SF Q N + + LA + +++ YCG G Sbjct: 289 YVLYGDGTITDHIKDLQFTLSPHSFFQVNPEQTTVLYDQALAYADLKGNEIVIDAYCGTG 348 Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281 SL LA V+ +EI +P++ AR N N +N + + + Sbjct: 349 TISLFLAHKAKHVIGIEIVEPAIINARENARNNGYDNTEFIVADAA------------VE 396 Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILST-T 338 + + R I DP R+G + + I+Y+SCNP ++ RD+ IL+ Sbjct: 397 MPKLYKAGVRPDVIVFDPIRAGCKEEVLTSAAGMEPKRIVYVSCNPATMARDIEILTHYG 456 Query: 339 HTIERLALFDQFPYTRHMECGVLLVRKPS 367 + ++ + D FP T H+E LL R + Sbjct: 457 YELKEVQPVDMFPMTAHVEAVALLTRSEA 485 >gi|118443042|ref|YP_877382.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium novyi NT] gi|118133498|gb|ABK60542.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium novyi NT] Length = 472 Score = 296 bits (759), Expect = 3e-78, Method: Composition-based stats. Identities = 80/404 (19%), Positives = 159/404 (39%), Gaps = 56/404 (13%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI---------------------FRSEP 40 ++ Y+ QL K +R++ + + I P Sbjct: 85 GCSIQHFNYKSQLEFKKNRVKDCLERIGKLEVSINNEETGNGCDENKGIILHDTLGMKNP 144 Query: 41 IHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLL---INALMIEMMATIRLE 97 YR + + + + ++ + ++ + + +D + I +L+ + M T ++ Sbjct: 145 YRYRNKVQLPVGEENGEIKVGFYAPRSHDIIDMDICHIQDEVGDTIVSLIKQWMKTYNIK 204 Query: 98 P--------LLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQI 149 P ++R + + + T++ +VT + E ++ D + + I Sbjct: 205 PYNEEKNTGIVRHIMVRRGFNTNEVMIVLVTRTNELPHKEELVELILKKIDGITSIVQNI 264 Query: 150 QLIGRANKTKICLDRD----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA 205 + KT + L + Y + ++ + SF Q N + L Sbjct: 265 N----SKKTNVILGLENITLYGKDYISDYIGEFKFNISPLSFFQVNPIQTEVLYNKALEY 320 Query: 206 TKGIQGDLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRM 264 +++ + YCG G SL L+++ +V VEI ++E A+ N N+V+N + + Sbjct: 321 AALTGNEVVFDAYCGTGTISLFLSKNAKKVYGVEIVDAAIENAKINAKENNVDNAEFIVG 380 Query: 265 SSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYIS 322 S+E + ++ + + VDPPR G D A + + I+Y+S Sbjct: 381 KSEEV------------IPNLINQGIKADVVVVDPPRKGCDKALLDAIGNMKPDRIVYVS 428 Query: 323 CNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVRK 365 C+P +L RDL+IL + + + D FP T H+EC V L RK Sbjct: 429 CDPGTLARDLAILGELGYATKEVQPVDMFPQTGHVECVVKLERK 472 >gi|254520598|ref|ZP_05132654.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium sp. 7_2_43FAA] gi|226914347|gb|EEH99548.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium sp. 7_2_43FAA] Length = 454 Score = 296 bits (759), Expect = 3e-78, Method: Composition-based stats. Identities = 80/392 (20%), Positives = 158/392 (40%), Gaps = 45/392 (11%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56 ++ Y++QL K +R++ + + N I P YR + + + Sbjct: 80 GCSIQHMNYKKQLDYKYERVKDCIYKIGGLSQDIVNYPIGMDTPERYRNKVQLPVGMVKG 139 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLL---INALMIEMMATIRLEP-----------LLRA 102 L + ++ + + +D + + + + E M + P L+R Sbjct: 140 KLSIGFYAPRSHDIIDLDTCLIQDNIADEVTRIAREWMEKYNISPASIDGKFNPQGLVRH 199 Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162 + + + ++++ +V L+ + + +++ ++ K IQ + A+ T + L Sbjct: 200 IMIRRGF---KTNEVMVVLVTTKNNVRHINDFVELIKENVNGIKSIIQNVNEAD-TNVIL 255 Query: 163 DRD----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLEL 216 + ++ +T + SF Q N + L G+ G+ + + Sbjct: 256 GEKCITLWGEDTITDYIDEFKFNISPLSFFQVNPKQTEVLYSKALE-YAGLTGEEVVFDA 314 Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276 YCG G +L L++ +V VEI K +++ A N N+V N + S+E Sbjct: 315 YCGTGTITLFLSQKAKKVYGVEIIKAAIDNANENAKINNVKNAEFFVGKSEEI------- 367 Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSI 334 + D+ + I VDPPR G D + + ++Y+SC+P +L RDL I Sbjct: 368 -----IPDLIDKGIIPEVIVVDPPRKGCDIKLLEAIGDAKPNRVVYVSCDPSTLARDLKI 422 Query: 335 LST-THTIERLALFDQFPYTRHMECGVLLVRK 365 L + ++ D FP+T H+EC LL K Sbjct: 423 LEEKGYKTAKVQPVDMFPHTSHVECVALLKNK 454 >gi|229083730|ref|ZP_04216051.1| Uncharacterized RNA methyltransferase [Bacillus cereus Rock3-44] gi|228699588|gb|EEL52252.1| Uncharacterized RNA methyltransferase [Bacillus cereus Rock3-44] Length = 458 Score = 296 bits (758), Expect = 3e-78, Method: Composition-based stats. Identities = 82/384 (21%), Positives = 158/384 (41%), Gaps = 32/384 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ------IFRSEPIHYRMRAEFHIWHDG 55 L Y++QL +K D + Q + N++ + P HYR +++ + Sbjct: 87 GCQLQHLDYKEQLNQKRDIVVQAFEKYMNGNVEADIRPTLGMGNPWHYRNKSQLQVGRKD 146 Query: 56 DDLYHIMFDQQTKERMRIDYFMP-------GSLLINALMIEMMATIRLEPLLRAKLFQID 108 + + ++ Q + + + I + M + ++ ++ ++ +I E + + I Sbjct: 147 EKVITGLYKQNSHQLIDISHCMIQHKATNEATKVVRRILEKLNISIYNEKKQKGLVRTIV 206 Query: 109 YLTS-QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY- 166 + Q+ + VTLI + + ++ + K +Q + + I D+ + Sbjct: 207 TRAAVQTGEVQVTLITTKEELPNKEQFIAEVQKQMPTVKSIMQNVNWRKTSVIFGDKTFN 266 Query: 167 --VDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGNGNF 223 E + L + +F Q N V + E AA +++ YCG G Sbjct: 267 LAGKEVIQETLGDLSFELSARAFFQLNPEQTVVLYNEAKKAAALTGTEKIVDAYCGVGTI 326 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 L LA V +++ ++E A+ N + N K ++++ +E Sbjct: 327 GLWLANDAAEVRGMDVIPEAIEDAKKNARRHGFTNTKYEAGKAEQWLPKWVKE------- 379 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILSTTHTI 341 +R I VDPPR+G DD + + ++Y+SCNP SL RD+ L ++ + Sbjct: 380 -----GWRPDVIVVDPPRTGCDDKLLETILKVKPKQVVYVSCNPSSLARDVKALMKSYEV 434 Query: 342 ERLALFDQFPYTRHMECGVLLVRK 365 E + D FP+T H+E V LVRK Sbjct: 435 EYVQPVDMFPHTAHVENVVKLVRK 458 >gi|228989496|ref|ZP_04149481.1| Uncharacterized RNA methyltransferase [Bacillus pseudomycoides DSM 12442] gi|228770221|gb|EEM18800.1| Uncharacterized RNA methyltransferase [Bacillus pseudomycoides DSM 12442] Length = 465 Score = 296 bits (758), Expect = 3e-78, Method: Composition-based stats. Identities = 79/386 (20%), Positives = 147/386 (38%), Gaps = 40/386 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56 L YE QL K ++R +M + + P YR +A+ I Sbjct: 94 GCQLQHLTYEGQLKAKEKQVRDVMQRIGGLHDVPVHPVLGMENPWVYRNKAQVPIGEREG 153 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-----------LRAKLF 105 L + Q T + + ++ + + +AL+ E+ + LR + Sbjct: 154 GLVAGFYRQGTHDIINMETCLIQAEENDALIQEVKRICEKHGITAYNEERHKGTLRHVMA 213 Query: 106 QIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161 + +T + +T L + + + ++ + + + + T + Sbjct: 214 RYGQVTGEIMLVFITRTAELPNKKAIIEEITAKFPNVKSIVQNVNTKRTNVIFGDTTTVL 273 Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220 +Y+ + + + + SF Q N + + L A +++ YCG Sbjct: 274 YGSEYIYDFIG----DIKFAISARSFYQVNPEQTKVLYDKALEYAKLDGNETVIDAYCGI 329 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G+ SL LA+ +V VEI ++E A N A N++ N + ++ +E Sbjct: 330 GSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFAVGEAEVVIPNWYKE---- 385 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST- 337 TI VDPPR G D+A + + ++Y+SCNP +L RDL +L Sbjct: 386 --------GVIADTIVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLARDLKVLEEG 437 Query: 338 THTIERLALFDQFPYTRHMECGVLLV 363 + + + D FP+T H+EC L Sbjct: 438 GYKTQEVQPVDMFPHTTHVECVAWLE 463 >gi|229028277|ref|ZP_04184413.1| Uncharacterized RNA methyltransferase [Bacillus cereus AH1271] gi|228733041|gb|EEL83887.1| Uncharacterized RNA methyltransferase [Bacillus cereus AH1271] Length = 459 Score = 296 bits (758), Expect = 3e-78, Method: Composition-based stats. Identities = 82/384 (21%), Positives = 159/384 (41%), Gaps = 32/384 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ------IFRSEPIHYRMRAEFHIWHDG 55 L Y++QL +K D + Q + +L+ + P HYR +++ + Sbjct: 88 GCQLQHLDYKEQLNQKRDIVVQAFEKYMNNSLEEKIRPTLGMENPWHYRNKSQLQVGRKD 147 Query: 56 DDLYHIMFDQQTKERMRIDYFMP-------GSLLINALMIEMMATIRLEPLLRAKLFQID 108 + + ++ Q + + + I + M + ++ ++ ++ +I E + + I Sbjct: 148 EKVITGLYKQNSHQLIDIAHCMIQHKATNEATKVVRRILEKLNVSIYNEKKQKGLVRTIV 207 Query: 109 YLTS-QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY- 166 T+ Q+ + VTLI + + ++ + + K +Q + + I D+ + Sbjct: 208 TRTAVQTGEVQVTLITTKEELPNKEQFIAEVQKQMPSVKSIMQNVNWRKTSVIFGDKTFK 267 Query: 167 --VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELYCGNGNF 223 E + L + +F Q N V + + AA +++ YCG G Sbjct: 268 LAGKEVIQETLGDLSFELSARAFFQLNPEQTVVLYDEAKKAAALTGDEKIVDAYCGVGTI 327 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 L LA V +++ ++ AR N + N K ++++ +E Sbjct: 328 GLWLANDAAEVRGMDVIPEAIADARKNAKRHGFTNTKYEAGKAEQWLPKWVKE------- 380 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILSTTHTI 341 +R I VDPPR+G DD + + ++Y+SCNP SL RD+ L ++ + Sbjct: 381 -----GWRPDVIVVDPPRTGCDDKLLETILKVKPKQVVYVSCNPSSLARDVQALMKSYEV 435 Query: 342 ERLALFDQFPYTRHMECGVLLVRK 365 E + D FP+T H+E V LVRK Sbjct: 436 EYVQPVDMFPHTAHVENVVKLVRK 459 >gi|229159573|ref|ZP_04287587.1| Uncharacterized RNA methyltransferase [Bacillus cereus R309803] gi|228623875|gb|EEK80687.1| Uncharacterized RNA methyltransferase [Bacillus cereus R309803] Length = 459 Score = 296 bits (758), Expect = 3e-78, Method: Composition-based stats. Identities = 83/384 (21%), Positives = 159/384 (41%), Gaps = 32/384 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ------IFRSEPIHYRMRAEFHIWHDG 55 L Y++QL +K D + Q + +L+ + P HYR +++ + Sbjct: 88 GCQLQHLDYKEQLNQKRDIVVQAFEKYMNNSLEERIRPTLGMENPWHYRNKSQLQVGRKD 147 Query: 56 DDLYHIMFDQQTKERMRIDYFMP-------GSLLINALMIEMMATIRLEPLLRAKLFQID 108 + + ++ Q + + + I + M + ++ ++ ++ +I E + + I Sbjct: 148 EKVITGLYKQNSHQLIDIAHCMIQHKATNEATKVVRRILEKLNVSIYNEKKQKGLVRTIV 207 Query: 109 YLTS-QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY- 166 T+ Q+ + VTLI + + ++ + A K +Q + + I D+ + Sbjct: 208 TRTAVQTGEVQVTLITTKEELPNKEQFIAEVQKQMPAVKSIMQNVNWRKTSVIFGDKTFK 267 Query: 167 --VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELYCGNGNF 223 E + L + +F Q N V + + AA +++ YCG G Sbjct: 268 LAGKEVIQETLGDLSFELSARAFFQLNPEQTVVLYDEAKKAAALTGNEKIVDAYCGVGTI 327 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 L LA V +++ ++ AR N + N K ++++ +E Sbjct: 328 GLWLANDAAEVRGMDVIPEAIADARKNAKRHGFTNTKYEAGKAEQWLPKWVKE------- 380 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILSTTHTI 341 +R I VDPPR+G DD + + ++Y+SCNP SL RD+ L ++ + Sbjct: 381 -----GWRPDVIVVDPPRTGCDDKLLETILKVKPKQVVYVSCNPSSLARDVQALMKSYEV 435 Query: 342 ERLALFDQFPYTRHMECGVLLVRK 365 E + D FP+T H+E V LVRK Sbjct: 436 EYVQPVDMFPHTAHVENVVKLVRK 459 >gi|291524456|emb|CBK90043.1| 23S rRNA m(5)U-1939 methyltransferase [Eubacterium rectale DSM 17629] Length = 493 Score = 296 bits (758), Expect = 4e-78, Method: Composition-based stats. Identities = 94/412 (22%), Positives = 160/412 (38%), Gaps = 49/412 (11%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ---------VPNLQIFRSEPIHYRMRAEFHIW 52 + YE+QL K +++R ++ + P YR +A+F + Sbjct: 79 GCQIQALSYEKQLEFKNNKVRNNLMRIGGFSEAKLDSKMQPPVGADNPYRYRNKAQFPVG 138 Query: 53 HDGDDLYH-IMFDQQTKERMRIDYF---MPGSLLINALMIEMMATIRLEP--------LL 100 +D D + ++ + +D +P + I ++ E M + P L+ Sbjct: 139 YDRDGNIVTGFYASRSHNIIPVDDCRLGVPQNKEILDIIKEWMNECGITPYDENTHKGLV 198 Query: 101 RAKLFQIDYLTSQSDQAIV----TLIYHRLLDDAWRECAIRLR--DALHARKYQIQ---- 150 R L + + + Q +V +L +A RL D + + Y I Sbjct: 199 RHVLIRYGFTSKQIMVCLVINGDSLEAKCRAGNAADILCERLSKIDGMTSISYNINKENT 258 Query: 151 LIGRANKTKICLDRDYVDERL--------TVAGRTLIYRQIENSFTQPNAGINVHMLEWV 202 + KT R Y+++ + T G + Y+ SF Q N + Sbjct: 259 NVILGKKTVCIWGRPYIEDTIHLLSYPDFTPQGTGITYQISPQSFYQVNPKQTEKLYSTA 318 Query: 203 LA-ATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261 LA A ++ +LYCG G SL L++ +V VEI +++ A+ N N + N + Sbjct: 319 LAFAGLTGNENVWDLYCGIGTISLFLSQKAKQVYGVEIVPQAIKDAKNNAKLNGITNAQF 378 Query: 262 VRMSSKEFTQAMRREREFNRLKDIDIHSY------RFKTIFVDPPRSGLDDATVGMVQAY 315 ++E + D S R I VDPPR G D+ + + A Sbjct: 379 FVGKAEEVLPQFYENAKKTEKITDDKASTGRTDMLRPDVIVVDPPRKGCDEKCLDTMLAM 438 Query: 316 --PHILYISCNPDSLCRDLSILS-TTHTIERLALFDQFPYTRHMECGVLLVR 364 I+Y+SC+ +L RDL IL + + + FDQF +T H+E LL R Sbjct: 439 LPERIVYVSCDSATLARDLKILCEEKYELMKWQAFDQFSHTTHVESICLLER 490 >gi|294497118|ref|YP_003560818.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus megaterium QM B1551] gi|294347055|gb|ADE67384.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus megaterium QM B1551] Length = 457 Score = 296 bits (758), Expect = 4e-78, Method: Composition-based stats. Identities = 76/388 (19%), Positives = 153/388 (39%), Gaps = 40/388 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-VPNLQI----FRSEPIHYRMRAEFHIWHDGD 56 L YE QL K +++ +M +P++ + ++P YR +A+ + Sbjct: 86 GCQLQHVSYEGQLQFKQKQVKDVMARIGHLPDVPVHSTLGMNDPWRYRNKAQVPVAEREG 145 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-----------LRAKLF 105 L + Q++ + + +D + + ++ + + + LR + Sbjct: 146 GLVAGFYQQRSHDIINMDACLIQQQANDDVVQAVRSICEKHDVSAYQEQKHKGSLRHIMA 205 Query: 106 QIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161 + +T + IVT L + + + E ++ + + + N+T + Sbjct: 206 RYGLVTGEIMVVIVTRTAELPNKKRIIEDIIEAVPNVKSIVQNVNSKRTNVILGNQTNVL 265 Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220 +Y+ + + + + SF Q N + + L A + +++ YCG Sbjct: 266 WGEEYIYDYIG----DVKFAISAKSFYQVNPEQTKVLYDKALEYADLTGEETVIDAYCGI 321 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G SL LA+ +V VEI ++E A+ N N ++N + ++ + Sbjct: 322 GTISLFLAQKAKKVYGVEIVPEAIEDAKRNAELNGIHNAEFEVGEAEVVIPNWYK----- 376 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST- 337 + I VDPPR G D+A + + ++Y+SC P +L RDL+IL Sbjct: 377 -------QGIKADVIVVDPPRKGCDEALLNTIIDMKPKKVVYVSCGPATLARDLAILEKG 429 Query: 338 THTIERLALFDQFPYTRHMECGVLLVRK 365 + + D FP+T H+E +L K Sbjct: 430 GYETVEVQPVDMFPHTTHVENVAVLKLK 457 >gi|228906231|ref|ZP_04070118.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis IBL 200] gi|228853387|gb|EEM98157.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis IBL 200] Length = 459 Score = 296 bits (758), Expect = 4e-78, Method: Composition-based stats. Identities = 82/384 (21%), Positives = 159/384 (41%), Gaps = 32/384 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ------IFRSEPIHYRMRAEFHIWHDG 55 L Y++QL +K D + Q + +++ + P HYR +++ + Sbjct: 88 GCQLQHLDYKEQLNQKRDIVVQAFEKYMKNSMEEKIRPTLGMENPWHYRNKSQLQVGRKD 147 Query: 56 DDLYHIMFDQQTKERMRIDYFMP-------GSLLINALMIEMMATIRLEPLLRAKLFQID 108 + + ++ Q + + + I + M + ++ ++ ++ +I E + + I Sbjct: 148 EKVITGLYKQNSHQLIDIAHCMIQHKATNEATKVVRRILEKLNVSIYNEKKQKGLVRTIV 207 Query: 109 YLTS-QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY- 166 T+ Q+ + VTLI + + ++ + A K +Q + + I D+ + Sbjct: 208 TRTAVQTGEVQVTLITTKEELPNKEQFIAEVQKQMPAVKSIMQNVNWRKTSVIFGDKTFK 267 Query: 167 --VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELYCGNGNF 223 E + L + +F Q N V + + AA +++ YCG G Sbjct: 268 LAGKEVIQETLGDLSFELSARAFFQLNPEQTVVLYDEAKKAAALTGNEKIVDAYCGVGTI 327 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 L LA V +++ ++ AR N + N K ++++ +E Sbjct: 328 GLWLANDAAEVRGMDVIPEAIADARKNAKRHGFTNTKYEAGKAEQWLPKWVKE------- 380 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILSTTHTI 341 +R I VDPPR+G DD + + ++Y+SCNP SL RD+ L ++ + Sbjct: 381 -----GWRPDVIVVDPPRTGCDDKLLETILKVKPKQVVYVSCNPSSLARDVQALMKSYEV 435 Query: 342 ERLALFDQFPYTRHMECGVLLVRK 365 E + D FP+T H+E V LVRK Sbjct: 436 EYVQPVDMFPHTAHVENVVKLVRK 459 >gi|228919350|ref|ZP_04082719.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228840286|gb|EEM85558.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 459 Score = 296 bits (758), Expect = 4e-78, Method: Composition-based stats. Identities = 84/384 (21%), Positives = 159/384 (41%), Gaps = 32/384 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ------IFRSEPIHYRMRAEFHIWHDG 55 L Y++QL +K D + Q + L+ + P HYR +++ + Sbjct: 88 GCQLQHLDYKEQLNQKRDIVVQAFQKYMNNGLEEKIRPTLGMENPWHYRNKSQLQVGRKD 147 Query: 56 DDLYHIMFDQQTKERMRIDYFMP-------GSLLINALMIEMMATIRLEPLLRAKLFQID 108 + + ++ Q + + + I + M + ++ ++ ++ +I E + + I Sbjct: 148 EKVITGLYKQNSHQLIDIAHCMIQHKATNEATKVVRRILEKLNVSIYNEKKQKGLVRTIV 207 Query: 109 YLTS-QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY- 166 T+ Q+ + VTLI + + ++ + A K +Q + + I D+ + Sbjct: 208 TRTAVQTGEVQVTLITTKEELPNKEQFIAEVQKQMPAVKSIMQNVNWRKTSVIFGDKTFK 267 Query: 167 --VDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGNGNF 223 E + L + +F Q N V + E AA +++ YCG G Sbjct: 268 LAGKEVIQETLGDLSFELSARAFFQLNPEQTVVLYNEAKKAAALTGNEKIVDAYCGVGTI 327 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 L LA V +++ ++ AR N + N K ++++ +E Sbjct: 328 GLWLANDAAEVRGMDVIPEAIADARKNAKRHGFTNTKYEAGKAEQWLPKWVKE------- 380 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILSTTHTI 341 +R I VDPPR+G DD + + ++Y+SCNP SL RD+ +L ++ + Sbjct: 381 -----GWRPDVIVVDPPRTGCDDKLLETILKVKPKQVVYVSCNPSSLARDVQVLMKSYEV 435 Query: 342 ERLALFDQFPYTRHMECGVLLVRK 365 E + D FP+T H+E V LVRK Sbjct: 436 EYVQPVDMFPHTAHVENVVKLVRK 459 >gi|206974209|ref|ZP_03235126.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus H3081.97] gi|206747449|gb|EDZ58839.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus H3081.97] Length = 459 Score = 296 bits (758), Expect = 4e-78, Method: Composition-based stats. Identities = 84/384 (21%), Positives = 159/384 (41%), Gaps = 32/384 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ------IFRSEPIHYRMRAEFHIWHDG 55 L Y++QL +K D + Q + +L+ + P HYR +++ + Sbjct: 88 GCQLQHLDYKEQLNQKRDIVVQAFEKYMNNSLEEKIRPTLGMENPWHYRNKSQLQVGRKD 147 Query: 56 DDLYHIMFDQQTKERMRIDYFMP-------GSLLINALMIEMMATIRLEPLLRAKLFQID 108 + + ++ Q + + + I + M + ++ ++ ++ +I E + + I Sbjct: 148 EKVITGLYKQNSHQLIDIAHCMIQHKATNEATKVVRRILEKLNVSIYNEKKQKGLVRTIV 207 Query: 109 YLTS-QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY- 166 T+ Q+ + VTLI + + ++ + A K +Q + + I D+ + Sbjct: 208 TRTAVQTGEVQVTLITTKEELPNKEQFITEVQKQMPAVKSIMQNVNWRKTSVIFGDKTFK 267 Query: 167 --VDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGNGNF 223 E + L + +F Q N V + E AA +++ YCG G Sbjct: 268 LAGKEVIQETLGDLSFELSARAFFQLNPEQTVVLYNEAKKAAALTGNEKIVDAYCGVGTI 327 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 L LA V +++ ++ AR N + N K ++++ +E Sbjct: 328 GLWLANDAAEVRGMDVIPEAIADARKNAKRHGFTNTKYEAGKAEQWLPKWVKE------- 380 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILSTTHTI 341 +R I VDPPR+G DD + + ++Y+SCNP SL RD+ L ++ + Sbjct: 381 -----GWRPDVIVVDPPRTGCDDKLLETILKVKPKQVVYVSCNPSSLARDVQALMKSYEV 435 Query: 342 ERLALFDQFPYTRHMECGVLLVRK 365 E + D FP+T H+E V LVRK Sbjct: 436 EYVQPVDMFPHTAHVENVVKLVRK 459 >gi|228983684|ref|ZP_04143884.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228776036|gb|EEM24402.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 459 Score = 296 bits (757), Expect = 5e-78, Method: Composition-based stats. Identities = 83/384 (21%), Positives = 159/384 (41%), Gaps = 32/384 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ------IFRSEPIHYRMRAEFHIWHDG 55 L Y++QL +K D + Q + +L+ + P HYR +++ + Sbjct: 88 GCQLQHLDYKEQLNQKRDIVVQAFEKYMKNSLEEKIRPTLGMESPWHYRNKSQLQVGRKD 147 Query: 56 DDLYHIMFDQQTKERMRIDYFMP-------GSLLINALMIEMMATIRLEPLLRAKLFQID 108 + + ++ + + + + I + M + ++ ++ ++ +I E + + I Sbjct: 148 EKVITGLYKKNSHQLIDIAHCMIQHKATNEATKVVRRILEKLNVSIYNEKKQKGLVRTIV 207 Query: 109 YLTS-QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY- 166 T+ Q+ + VTLI + + ++ + A K +Q + + I D+ + Sbjct: 208 TRTAVQTGEVQVTLITTKEELPNKEQFIAEVQKQMPAVKSIMQNVNWRKTSVIFGDKTFK 267 Query: 167 --VDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGNGNF 223 E + L + +F Q N V + E AA +++ YCG G Sbjct: 268 LAGKEVIQETLGDLSFELSARAFFQLNPEQTVVLYNEAKKAAALTGNEKIVDAYCGVGTI 327 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 L LA V +++ ++ AR N + N K ++++ +E Sbjct: 328 GLWLANDAAEVRGMDVIPEAIADARKNAKRHGFTNTKYEAGKAEQWLPKWVKE------- 380 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILSTTHTI 341 +R I VDPPR+G DD + + ++Y+SCNP SL RD+ L ++ + Sbjct: 381 -----GWRPDVIVVDPPRTGCDDKLLETILKVKPKQVVYVSCNPSSLARDVQALMKSYEV 435 Query: 342 ERLALFDQFPYTRHMECGVLLVRK 365 E + D FP+T H+E V LVRK Sbjct: 436 EYVQPVDMFPHTAHVENVVKLVRK 459 >gi|238019497|ref|ZP_04599923.1| hypothetical protein VEIDISOL_01366 [Veillonella dispar ATCC 17748] gi|237864196|gb|EEP65486.1| hypothetical protein VEIDISOL_01366 [Veillonella dispar ATCC 17748] Length = 495 Score = 296 bits (757), Expect = 5e-78, Method: Composition-based stats. Identities = 76/383 (19%), Positives = 143/383 (37%), Gaps = 34/383 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56 L YE QL+ K +++ ++ + + EP YR + + + Sbjct: 122 GCQLQHITYEGQLSLKTQKVKDVIERIGHQNPDLVKPTLGPKEPWAYRNKMQMPVGGTKG 181 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSL---LINALMIEMMATIRLEPL----LRAKLFQIDY 109 D+ + + + ++ +I ++ +EP + L I Sbjct: 182 DIQMGFYAMGSHDIVQGTNCPIQDEGNNIIAQACYQIAKAFDIEPYDEHTGKGVLRHIIG 241 Query: 110 LTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD---- 165 QS I+ + L + +L + + + + + +T + L Sbjct: 242 RIGQSGWMIILVTATEQL-PHKEKWVEKLIERIPQVETIVHNVN-GKRTNVILGPKNNIL 299 Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNFS 224 Y D +T + L + +SF Q N + + LA A +++ YCG G S Sbjct: 300 YGDGTITDHIKDLRFTLSPHSFFQVNPEQTTVLYDQALAYADLKGDETVIDAYCGTGTIS 359 Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284 L LA V+ +EI +P++ AR N N +N + + + + Sbjct: 360 LFLAHKAKHVIGIEIVEPAIINARENAQRNGYDNTEFIVADAA------------VEMPK 407 Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILST-THTI 341 + R I DP R+G + + I+Y+SCNP ++ RD+ IL+ + + Sbjct: 408 LYKAGVRPDVIVFDPIRAGCKEEVLTSAAGMEPKRIVYVSCNPATMARDIEILTHYGYEL 467 Query: 342 ERLALFDQFPYTRHMECGVLLVR 364 + + D FP T H+E LL R Sbjct: 468 QEVQPVDMFPMTAHVEAVALLTR 490 >gi|47567252|ref|ZP_00237966.1| RNA methyltransferase, TrmA family [Bacillus cereus G9241] gi|228913174|ref|ZP_04076813.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229042327|ref|ZP_04190077.1| Uncharacterized RNA methyltransferase [Bacillus cereus AH676] gi|47556095|gb|EAL14432.1| RNA methyltransferase, TrmA family [Bacillus cereus G9241] gi|228726986|gb|EEL78193.1| Uncharacterized RNA methyltransferase [Bacillus cereus AH676] gi|228846579|gb|EEM91592.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 459 Score = 296 bits (757), Expect = 5e-78, Method: Composition-based stats. Identities = 84/384 (21%), Positives = 159/384 (41%), Gaps = 32/384 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ------IFRSEPIHYRMRAEFHIWHDG 55 L Y++QL +K D + Q + +L+ + P HYR +++ + Sbjct: 88 GCQLQHLDYKEQLNQKRDIVVQAFEKYMKNSLEEKIRPTLGMENPWHYRNKSQLQVGRKD 147 Query: 56 DDLYHIMFDQQTKERMRIDYFMP-------GSLLINALMIEMMATIRLEPLLRAKLFQID 108 + + ++ Q + + + I + M + ++ ++ ++ +I E + + I Sbjct: 148 EKVITGLYKQNSHQLIDIAHCMIQHKATNEATKVVRRILEKLNVSIYNEKKQKGLVRTIV 207 Query: 109 YLTS-QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY- 166 T+ Q+ + VTLI + + ++ + A K +Q + + I D+ + Sbjct: 208 TRTAVQTGEVQVTLITTKEELPNKEQFIAEVQKQMPAVKSIMQNVNWRKTSVIFGDKTFK 267 Query: 167 --VDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGNGNF 223 E + L + +F Q N V + E AA +++ YCG G Sbjct: 268 LAGKEVIQETLGDLSFELSARAFFQLNPEQTVVLYNEAKKAAALTGNEKIVDAYCGVGTI 327 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 L LA V +++ ++ AR N + N K ++++ +E Sbjct: 328 GLWLANDAAEVRGMDVIPEAIADARKNAKRHGFTNTKYEAGKAEQWLPKWVKE------- 380 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILSTTHTI 341 +R I VDPPR+G DD + + ++Y+SCNP SL RD+ L ++ + Sbjct: 381 -----GWRPDVIVVDPPRTGCDDKLLETILKVKPKQVVYVSCNPSSLARDVQALMKSYEV 435 Query: 342 ERLALFDQFPYTRHMECGVLLVRK 365 E + D FP+T H+E V LVRK Sbjct: 436 EYVQPVDMFPHTAHVENVVKLVRK 459 >gi|228931916|ref|ZP_04094810.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228827701|gb|EEM73441.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 459 Score = 296 bits (757), Expect = 5e-78, Method: Composition-based stats. Identities = 83/384 (21%), Positives = 159/384 (41%), Gaps = 32/384 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ------IFRSEPIHYRMRAEFHIWHDG 55 L Y++QL +K D + Q + +++ + P HYR +++ + Sbjct: 88 GCQLQHLDYKEQLNQKRDIVVQAFEKYMKNSMEEKIRPTLGMENPWHYRNKSQLQVGRKD 147 Query: 56 DDLYHIMFDQQTKERMRIDYFMP-------GSLLINALMIEMMATIRLEPLLRAKLFQID 108 + + ++ Q + + + I + M + ++ ++ ++ +I E + + I Sbjct: 148 EKVITGLYKQNSHQLIDIAHCMIQHKATNEATKVVRRILEKLNVSIYNEKKQKGLVRTIV 207 Query: 109 YLTS-QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY- 166 T+ Q+ + VTLI + + ++ + A K +Q + + I D+ + Sbjct: 208 TRTAVQTGEVQVTLITTKEELPNKEQFIAEVQKQMPAVKSIMQNVNWRKTSVIFGDKTFK 267 Query: 167 --VDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGNGNF 223 E + L + +F Q N V + E AA +++ YCG G Sbjct: 268 LAGKEVIQETLGDLSFELSARAFFQLNPEQTVVLYNEAKKAAALTGNEKIVDAYCGVGTI 327 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 L LA V +++ ++ AR N + N K ++++ +E Sbjct: 328 GLWLANDAAEVRGMDVIPEAIADARKNAKRHGFTNTKYEAGKAEQWLPKWVKE------- 380 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILSTTHTI 341 +R I VDPPR+G DD + + ++Y+SCNP SL RD+ L ++ + Sbjct: 381 -----GWRPDVIVVDPPRTGCDDKLLETILKVKPKQVVYVSCNPSSLARDVQALMKSYEV 435 Query: 342 ERLALFDQFPYTRHMECGVLLVRK 365 E + D FP+T H+E V LVRK Sbjct: 436 EYVQPVDMFPHTAHVENVVKLVRK 459 >gi|210621791|ref|ZP_03292820.1| hypothetical protein CLOHIR_00765 [Clostridium hiranonis DSM 13275] gi|210154555|gb|EEA85561.1| hypothetical protein CLOHIR_00765 [Clostridium hiranonis DSM 13275] Length = 456 Score = 296 bits (757), Expect = 5e-78, Method: Composition-based stats. Identities = 82/389 (21%), Positives = 153/389 (39%), Gaps = 41/389 (10%) Query: 2 SGTLLID-QYEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFHIWHDG 55 G + + Y +QL K + ++Q++ I P YR +A+F + Sbjct: 84 GGCQIQELDYNKQLELKTNEVKQVISRIGKIEGATIHDTIGMETPFRYRNKAQFPVQMRK 143 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGSLL-----------INALMIEMMATIRLEPLLRAKL 104 + + +++ E + M L I I + ++ + LLR + Sbjct: 144 GEPVIGFYKKKSHEVIPTAKCMIQHELNDEIIEVVREFIVENNISVYDEVKHKGLLRHIV 203 Query: 105 FQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR 164 +I + T + +V L+ + + A L + + K + + NKT + L R Sbjct: 204 TKIGFTTG---EVMVVLVANGKNIPNVNKLAKMLEERIKGFKTLVVNVNT-NKTNVILGR 259 Query: 165 DY----VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCG 219 + ++ L++ SF Q N + L A + ++YCG Sbjct: 260 ENKVICGTGKINDYIGNLVFEISPLSFFQVNPVQTEVLYNKALEYANLTGNETVFDIYCG 319 Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279 G SL LA+ +V +EI + +++ A+ N N + N + ++E M +E Sbjct: 320 IGTISLFLAQKAKKVYGIEIVEDAIKDAKRNAELNGLENTEFYAGKAEEVVPKMYKE--- 376 Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST 337 + + VDPPR G D+ + + ++Y+SCNP +L RDL+ + Sbjct: 377 ---------GKKADVVVVDPPRKGCDEKVLDTIVSMDPERVVYVSCNPSTLARDLAYMDE 427 Query: 338 -THTIERLALFDQFPYTRHMECGVLLVRK 365 + D FP++ H+E LL RK Sbjct: 428 RGFKCVEIQPVDMFPHSVHVENVALLERK 456 >gi|293401235|ref|ZP_06645379.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291305361|gb|EFE46606.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 535 Score = 296 bits (757), Expect = 5e-78, Method: Composition-based stats. Identities = 81/380 (21%), Positives = 151/380 (39%), Gaps = 37/380 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWHDGDD 57 L Y++QLA K +++ ++ ++Q+ ++P HYR + + + Sbjct: 81 GCQLQHMSYKEQLAFKKQKVQDVIERIAKLDVQVEDVLGMAQPDHYRNKGQIPVGVVKGQ 140 Query: 58 LYHIMFDQQTKERMRIDYFMPGSLLINALMI---EMMATIRLEPLLRAKLFQIDYLTSQS 114 + + + + D S INA++ + + R L + ++T Sbjct: 141 VVTGFYRINSNTIIDTDSCGIQSEKINAVLQTMRSLFKKYGNAGVFRHLLIKHAFVTG-- 198 Query: 115 DQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQI-------QLIGRANKTKICLDRDYV 167 + +V I + E L + K + + + ++ ++ Sbjct: 199 -EVMVVWIVRQKKFAHREEMVQELVQTIPEIKSVVLNLNTREDNVILGKQEEVLYGESFI 257 Query: 168 DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLV 226 + + L + SF Q N + L + +++LYCG G S+ Sbjct: 258 TDEI----NGLKFHISAKSFYQVNPVQTKVLYGKALEFCNLKGNEIVIDLYCGVGTISMF 313 Query: 227 LARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDID 286 LA+ +V+ +EI + +V AR N A N ++NV+ V + + + M Sbjct: 314 LAQKAGKVIGIEIVEQAVRDARENAALNGLDNVEFVCSDAAAYAKKMSE----------- 362 Query: 287 IHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILS-TTHTIER 343 R + VDPPR G D T+ + A ++Y+SC+P +L RDL IL + +E Sbjct: 363 -QGGRADVVVVDPPRKGCDQVTLDSIVQMAPERLVYVSCDPATLARDLRILEGKGYRVEV 421 Query: 344 LALFDQFPYTRHMECGVLLV 363 + D FP T H+E VLL Sbjct: 422 VQPVDMFPGTHHVETVVLLS 441 >gi|126649590|ref|ZP_01721831.1| RNA methyltransferase [Bacillus sp. B14905] gi|126593915|gb|EAZ87838.1| RNA methyltransferase [Bacillus sp. B14905] Length = 459 Score = 296 bits (757), Expect = 5e-78, Method: Composition-based stats. Identities = 84/388 (21%), Positives = 147/388 (37%), Gaps = 40/388 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMML---AFQVPNLQI-FRSEPIHYRMRAEFHIW-HDGD 56 L YE QL K + +R +M P L + EP HYR +A+ ++ Sbjct: 88 GCQLQHLSYEGQLKWKENMVRNVMQRIGKIDAPVLPVKGMKEPWHYRNKAQIPFSENEAG 147 Query: 57 DLYHIMFDQQTKERMRIDYFMP----GSLLINALMIEMMA-------TIRLEPLLRAKLF 105 + +T + ++ + ++ L E++A + E +LR + Sbjct: 148 QAIAGFYKTKTHSIVDMERCLIQTGEADAILAGLKKELVAIGMRPYNELSHEGMLRHVVI 207 Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRL----RDALHARKYQIQLIGRANKTKIC 161 + T + +VT +A +L + ++ + + T Sbjct: 208 RKARATGEVMVVLVTKKKKFPQKEAAIAVIQKLVPNVTSIMQNVNHEKTNVIFGDDTLNL 267 Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220 +D + + + + + SF Q N + + L A +++ YCG Sbjct: 268 WGKDVIIDTIG----DVRFEISARSFYQVNPEQTEVLYKQALDYANLQGDERVIDAYCGI 323 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G SL LA+ V+ VEI ++E A+ N N N ++E +E Sbjct: 324 GTISLFLAQKAKAVMGVEIVPQAIEDAKRNAVLNGFTNTYFEAGPAEEVIPRWYKE---- 379 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILS-T 337 + VDPPR G D+A + + Q ++Y+SCNP +L RDL IL Sbjct: 380 --------GKEADVLVVDPPRKGCDEALLKTILEQRPKRVVYVSCNPATLARDLRILEDG 431 Query: 338 THTIERLALFDQFPYTRHMECGVLLVRK 365 + + + D FP++ H E LVRK Sbjct: 432 GYQTQEIQPVDMFPHSTHCEAVAWLVRK 459 >gi|229154191|ref|ZP_04282314.1| Uncharacterized RNA methyltransferase [Bacillus cereus ATCC 4342] gi|228629281|gb|EEK85985.1| Uncharacterized RNA methyltransferase [Bacillus cereus ATCC 4342] Length = 459 Score = 295 bits (756), Expect = 5e-78, Method: Composition-based stats. Identities = 84/384 (21%), Positives = 159/384 (41%), Gaps = 32/384 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ------IFRSEPIHYRMRAEFHIWHDG 55 L Y++QL +K D + Q + +L+ + P HYR +++ + Sbjct: 88 GCQLQHLDYKEQLNQKRDIVVQAFEKYMKNSLEEKIRPTLGMENPWHYRNKSQLQVGRKD 147 Query: 56 DDLYHIMFDQQTKERMRIDYFMP-------GSLLINALMIEMMATIRLEPLLRAKLFQID 108 + + ++ Q + + + I + M + ++ ++ ++ +I E + + I Sbjct: 148 EKVITGLYKQNSHQLIDIAHCMIQHKATNEATKVVRRILEKLNVSIYNEKKQKGLVRTIV 207 Query: 109 YLTS-QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY- 166 T+ Q+ + VTLI + + ++ + A K +Q + + I D+ + Sbjct: 208 TRTAVQTGEVQVTLITTKEELPNKEQFIAEVQKQMPAVKSIMQNVNWRKTSVIFGDKTFK 267 Query: 167 --VDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGNGNF 223 E + L + +F Q N V + E AA +++ YCG G Sbjct: 268 LAGKEVIQETLGDLSFELSARAFFQLNPEQTVVLYNEAKKAAALTGNEKIVDAYCGVGTI 327 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 L LA V +++ ++ AR N + N K ++++ +E Sbjct: 328 GLWLANDAAEVRGMDVIPEAIADARKNAKRHGFTNTKYEAGKAEQWLPKWVKE------- 380 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILSTTHTI 341 +R I VDPPR+G DD + + ++Y+SCNP SL RD+ L ++ + Sbjct: 381 -----GWRPDVIVVDPPRTGCDDKLLETILKVKPKQVVYVSCNPSSLARDVQALMKSYEV 435 Query: 342 ERLALFDQFPYTRHMECGVLLVRK 365 E + D FP+T H+E V LVRK Sbjct: 436 EYIQPVDMFPHTAHVENVVKLVRK 459 >gi|228950978|ref|ZP_04113099.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229068174|ref|ZP_04201481.1| Uncharacterized RNA methyltransferase [Bacillus cereus F65185] gi|229077781|ref|ZP_04210408.1| Uncharacterized RNA methyltransferase [Bacillus cereus Rock4-2] gi|229177011|ref|ZP_04304406.1| Uncharacterized RNA methyltransferase [Bacillus cereus 172560W] gi|229188691|ref|ZP_04315730.1| Uncharacterized RNA methyltransferase [Bacillus cereus ATCC 10876] gi|228594880|gb|EEK52660.1| Uncharacterized RNA methyltransferase [Bacillus cereus ATCC 10876] gi|228606486|gb|EEK63912.1| Uncharacterized RNA methyltransferase [Bacillus cereus 172560W] gi|228705509|gb|EEL57868.1| Uncharacterized RNA methyltransferase [Bacillus cereus Rock4-2] gi|228714988|gb|EEL66856.1| Uncharacterized RNA methyltransferase [Bacillus cereus F65185] gi|228808705|gb|EEM55203.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 459 Score = 295 bits (756), Expect = 5e-78, Method: Composition-based stats. Identities = 83/384 (21%), Positives = 159/384 (41%), Gaps = 32/384 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ------IFRSEPIHYRMRAEFHIWHDG 55 L Y++QL +K D + Q + +++ + P HYR +++ + Sbjct: 88 GCQLQHLDYKEQLNQKRDIVVQAFEKYMKNSMEEKIRPTLGMENPWHYRNKSQLQVGRKD 147 Query: 56 DDLYHIMFDQQTKERMRIDYFMP-------GSLLINALMIEMMATIRLEPLLRAKLFQID 108 + + ++ Q + + + I + M + ++ ++ ++ +I E + + I Sbjct: 148 EKVITGLYKQNSHQLIDIAHCMIQHKATNEATKVVRRILEKLNVSIYNEKKQKGLVRTIV 207 Query: 109 YLTS-QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY- 166 T+ Q+ + VTLI + + ++ + A K +Q + + I D+ + Sbjct: 208 TRTAVQTGEVQVTLITTKEELPNKEQFIAEVQKQMPAVKSIMQNVNWRKTSVIFGDKTFK 267 Query: 167 --VDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGNGNF 223 E + L + +F Q N V + E AA +++ YCG G Sbjct: 268 LAGKEVIQETLGDLSFELSARAFFQLNPEQTVVLYNEAKKAAALTGDEKIVDAYCGVGTI 327 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 L LA V +++ ++ AR N + N K ++++ +E Sbjct: 328 GLWLANDAAEVRGMDVIPEAIADARKNAKRHGFTNTKYEAGKAEQWLPKWVKE------- 380 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILSTTHTI 341 +R I VDPPR+G DD + + ++Y+SCNP SL RD+ L ++ + Sbjct: 381 -----GWRPDVIVVDPPRTGCDDKLLETILKVKPKQVVYVSCNPSSLARDVQALMKSYEV 435 Query: 342 ERLALFDQFPYTRHMECGVLLVRK 365 E + D FP+T H+E V LVRK Sbjct: 436 EYVQPVDMFPHTAHVENVVKLVRK 459 >gi|205356330|ref|ZP_03223095.1| tRNA (uracil-5-)-methyltransferase [Campylobacter jejuni subsp. jejuni CG8421] gi|205345715|gb|EDZ32353.1| tRNA (uracil-5-)-methyltransferase [Campylobacter jejuni subsp. jejuni CG8421] Length = 357 Score = 295 bits (756), Expect = 6e-78, Method: Composition-based stats. Identities = 133/352 (37%), Positives = 206/352 (58%), Gaps = 8/352 (2%) Query: 14 LAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRI 73 L EK +++ F + ++F S+ HYR RAE +H+ D L++ MFD + K++ I Sbjct: 12 LDEKHSFIKKYFKEFYTKDFKLFASKDKHYRTRAELSFYHENDTLFYAMFDPKNKKKYII 71 Query: 74 DYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRE 133 +Y I A M +++ +R + L+ KLF +++LT++ + + VTL+YH+ ++D + Sbjct: 72 EYLDFADEKICAFMPKLLEYLRQDNKLKEKLFGVEFLTTKQELS-VTLLYHKNIED-IKS 129 Query: 134 CAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAG 193 L + LH I LI R+ K+ + + + L + GR + Y + F QPN Sbjct: 130 NLENLSNNLH-----INLIARSKGKKLIFKTENLRQTLNIQGRKIFYEFNNDCFIQPNTT 184 Query: 194 INVHMLEWVLA-ATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIA 252 IN M+ WV + DLLELYCG GNF+L LA F ++LA EI+K ++ A N Sbjct: 185 INEKMITWVCEILNTQKRMDLLELYCGYGNFTLALAPFFFKILATEISKSNINFALKNCE 244 Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312 N+ N+ R+SS+E + A+++EREF RLKDI + + F + VDPPR+GLD + + ++ Sbjct: 245 LNNTINIHFARLSSEELSLAIKKEREFFRLKDIRLDDFNFSHVLVDPPRAGLDKSVIDLI 304 Query: 313 QAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 + Y +I+YISCNP +L +L LS TH E ALFDQF T H+ECGV L + Sbjct: 305 KKYENIIYISCNPITLKENLKELSLTHRAEEFALFDQFVNTPHLECGVFLSK 356 >gi|293375600|ref|ZP_06621874.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Turicibacter sanguinis PC909] gi|292645817|gb|EFF63853.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Turicibacter sanguinis PC909] Length = 459 Score = 295 bits (756), Expect = 6e-78, Method: Composition-based stats. Identities = 79/390 (20%), Positives = 137/390 (35%), Gaps = 42/390 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFHIWHDGD 56 + Y QL K D + I EP YR + + Sbjct: 86 GCQVQHLNYPGQLQMKYDTVVNQFKRIGHIEDANILPTIGMEEPWRYRNKTQVPFGLANG 145 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMM-----------ATIRLEPLLRAKLF 105 D+ + +++ E + + + + + + + ++ EM +LR + Sbjct: 146 DVVAGFYQKRSHEIIDMRHCLIQTEISDEIIHEMRGICRDLKLSPYNEESNTGILRHVIV 205 Query: 106 QIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161 + + T + +VT +I + E +++ + KT I Sbjct: 206 RTGFKTDEIMVILVTRKEKIINMDRIVSRLLEKFPQIKVIAQNINPNVTNAILGEKTNII 265 Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCG 219 Y+ + + + + SF Q N + + G+ G+ + + YCG Sbjct: 266 YGEGYIYDEM----NGIRFAISPRSFYQVNPVQTETLYSKAVE-FAGLTGEEIVFDAYCG 320 Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279 G +L LA+H +V VEI ++ A N N N + S+E A Sbjct: 321 IGTITLFLAQHAKKVYGVEIIPEAIADANMNAKLNGFENTEFAVGKSEEVIPAWIE---- 376 Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-S 336 I VDPPR G D + + A I+Y+SC+ +L RD+ IL Sbjct: 377 --------QGIVPDVIVVDPPRKGCDKTLLDTMLEAAPKRIVYVSCDSSTLARDVKILVD 428 Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVRKP 366 + +E D FP T H+E LL RK Sbjct: 429 GGYQLEVAQPVDMFPQTSHVEVVALLTRKN 458 >gi|222094222|ref|YP_002528279.1| RNA methyltransferase, trma family [Bacillus cereus Q1] gi|221238277|gb|ACM10987.1| RNA methyltransferase, TrmA family [Bacillus cereus Q1] Length = 459 Score = 295 bits (756), Expect = 6e-78, Method: Composition-based stats. Identities = 84/384 (21%), Positives = 158/384 (41%), Gaps = 32/384 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ------IFRSEPIHYRMRAEFHIWHDG 55 L Y++QL +K D + Q + L+ + P HYR +++ + Sbjct: 88 GCQLQHLDYKEQLNQKRDIVVQAFQKYMNNGLEEKILPTLGMENPWHYRNKSQLQVGRKD 147 Query: 56 DDLYHIMFDQQTKERMRIDYFMP-------GSLLINALMIEMMATIRLEPLLRAKLFQID 108 + + ++ Q + + + I + M + ++ ++ ++ +I E + + I Sbjct: 148 EKVITGLYKQNSHQLIDIAHCMIQHKATNEATKVVRRILEKLNVSIYNEKKQKGLVRTIV 207 Query: 109 YLTS-QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY- 166 T+ Q+ + VTLI + + ++ + A K +Q + + I D+ + Sbjct: 208 TRTAVQTGEVQVTLITTKEELPNKEQFIAEVQKQMPAVKSIMQNVNWRKTSVIFGDKTFK 267 Query: 167 --VDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGNGNF 223 E + L + +F Q N V + E AA +++ YCG G Sbjct: 268 LAGKEVIQETLGDLSFELSARAFFQLNPEQTVVLYNEAKKAAALTGNEKIVDAYCGVGTI 327 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 L LA V +++ ++ AR N + N K ++++ +E Sbjct: 328 GLWLANDAAEVRGMDVIPEAIADARKNAKRHGFTNTKYEAGKAEQWLPKWVKE------- 380 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILSTTHTI 341 +R I VDPPR+G DD + + ++Y+SCNP SL RD+ L ++ + Sbjct: 381 -----GWRPDVIVVDPPRTGCDDKLLETILKVKPKQVVYVSCNPSSLARDVQALMKSYEV 435 Query: 342 ERLALFDQFPYTRHMECGVLLVRK 365 E + D FP+T H+E V LVRK Sbjct: 436 EYVQPVDMFPHTAHVENVVKLVRK 459 >gi|217958023|ref|YP_002336567.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus AH187] gi|229137289|ref|ZP_04265905.1| Uncharacterized RNA methyltransferase [Bacillus cereus BDRD-ST26] gi|217068021|gb|ACJ82271.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus AH187] gi|228646192|gb|EEL02410.1| Uncharacterized RNA methyltransferase [Bacillus cereus BDRD-ST26] Length = 459 Score = 295 bits (756), Expect = 6e-78, Method: Composition-based stats. Identities = 84/384 (21%), Positives = 159/384 (41%), Gaps = 32/384 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ------IFRSEPIHYRMRAEFHIWHDG 55 L Y++QL +K D + Q + +L+ + P HYR +++ + Sbjct: 88 GCQLQHLDYKEQLNQKRDIVVQAFEKYMNNSLEEKIRPTLGMENPWHYRNKSQLQVGRKD 147 Query: 56 DDLYHIMFDQQTKERMRIDYFMP-------GSLLINALMIEMMATIRLEPLLRAKLFQID 108 + + ++ Q + + + I + M + ++ ++ ++ +I E + + I Sbjct: 148 EKVITGLYKQNSHQLIDIAHCMIQHKATNEATKVVRRILEKLNVSIYNEKKQKGLVRTIV 207 Query: 109 YLTS-QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY- 166 T+ Q+ + VTLI + + ++ + A K +Q + + I D+ + Sbjct: 208 TRTAVQTGEVQVTLITTKEELPNKEQFITEVQKQMPAVKSIMQNVNWRKTSVIFGDKTFK 267 Query: 167 --VDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGNGNF 223 E + L + +F Q N V + E AA +++ YCG G Sbjct: 268 LAGKEVIQETLGDLSFELSARAFFQLNPEQTVVLYNEAKKAAALTGNEKIVDAYCGVGTI 327 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 L LA V +++ ++ AR N + N K ++++ +E Sbjct: 328 GLWLANDAAEVRGMDVIPEAIADARKNAKHHGFTNTKYEAGKAEQWLPKWVKE------- 380 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILSTTHTI 341 +R I VDPPR+G DD + + ++Y+SCNP SL RD+ L ++ + Sbjct: 381 -----GWRPDVIVVDPPRTGCDDKLLETILKVKPKQVVYVSCNPSSLARDVQALMKSYEV 435 Query: 342 ERLALFDQFPYTRHMECGVLLVRK 365 E + D FP+T H+E V LVRK Sbjct: 436 EYVQPVDMFPHTAHVENVVKLVRK 459 >gi|256752392|ref|ZP_05493252.1| RNA methyltransferase, TrmA family [Thermoanaerobacter ethanolicus CCSD1] gi|256748727|gb|EEU61771.1| RNA methyltransferase, TrmA family [Thermoanaerobacter ethanolicus CCSD1] Length = 453 Score = 295 bits (756), Expect = 6e-78, Method: Composition-based stats. Identities = 76/387 (19%), Positives = 147/387 (37%), Gaps = 39/387 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVP----NLQIFRSEPIHYRMRAEFHIWHDGDD 57 +L YE QL K +++ + + I +P YR +A+F + Sbjct: 82 GCSLQHLSYEGQLKYKTQKVKDNLERIGKVYTRVHDTIGMEKPQRYRNKAQFPVGMVEGK 141 Query: 58 LYHIMFDQQTKERMRIDYFMPGSLL-----------INALMIEMMATIRLEPLLRAKLFQ 106 + ++ + + ++ M + I I + + L+R + + Sbjct: 142 AVTGFYAPRSHDIVPVESCMIQHEISDEIARVVRNWIRKYNISVYDEKTGKGLIRHIVTR 201 Query: 107 IDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162 + + T + IV + Y + L DA +E L+ + + + + Sbjct: 202 VAFKTGEVMAVIVINGKDIPYKKQLIDALKEEIRGLKSVVININTKKTNVIMGEENITIY 261 Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNG 221 D + + + + + + SF Q N + L A + ++++YCG G Sbjct: 262 GSDNIIDYI----KDIKFEISPLSFFQVNPVQTEVLYGKALEYADLKGEETVIDVYCGIG 317 Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281 SL A+ V +E +VE A+ N N + NV+ + +++ Sbjct: 318 TISLFAAQKAAFVYGIEAVYQAVEDAKRNAYINGIKNVEFISGDAEKV------------ 365 Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILS-TT 338 + ++ + + +DPPR G D + + V I+Y+SCNP +L RDL L Sbjct: 366 MPELADKGVKADVVIMDPPRKGCDTSVLEAVIKMNPKKIVYVSCNPSTLARDLRYLEDNG 425 Query: 339 HTIERLALFDQFPYTRHMECGVLLVRK 365 + + D FPYT H+E L+ K Sbjct: 426 YKTMEVQPVDMFPYTHHVESVCLITNK 452 >gi|228937723|ref|ZP_04100357.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228970603|ref|ZP_04131251.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228977182|ref|ZP_04137581.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis Bt407] gi|228782491|gb|EEM30670.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis Bt407] gi|228789069|gb|EEM37000.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228821931|gb|EEM67925.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326938209|gb|AEA14105.1| tRNA (Uracil-5-) -methyltransferase [Bacillus thuringiensis serovar chinensis CT-43] Length = 459 Score = 295 bits (756), Expect = 6e-78, Method: Composition-based stats. Identities = 83/384 (21%), Positives = 159/384 (41%), Gaps = 32/384 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ------IFRSEPIHYRMRAEFHIWHDG 55 L Y++QL +K D + Q + +++ + P HYR +++ + Sbjct: 88 GCQLQHLDYKEQLNQKRDIVVQAFEKYMKNSMEEKIRPTLGMENPWHYRNKSQLQVGRKD 147 Query: 56 DDLYHIMFDQQTKERMRIDYFMP-------GSLLINALMIEMMATIRLEPLLRAKLFQID 108 + + ++ Q + + + I + M + ++ ++ ++ +I E + + I Sbjct: 148 EKVITGLYKQNSHQLIDIAHCMIQHKATNEATKVVRRILEKLNVSIYNEKKQKGLVRTIV 207 Query: 109 YLTS-QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY- 166 T+ Q+ + VTLI + + ++ + A K +Q + + I D+ + Sbjct: 208 TRTAVQTGEVQVTLITTKEELPNKEQFVAEVQKQMPAVKSIMQNVNWRKTSVIFGDKTFK 267 Query: 167 --VDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGNGNF 223 E + L + +F Q N V + E AA +++ YCG G Sbjct: 268 LAGKEVIQETLGDLSFELSARAFFQLNPEQTVVLYNEAKKAAALTGDEKIVDAYCGVGTI 327 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 L LA V +++ ++ AR N + N K ++++ +E Sbjct: 328 GLWLANDAAEVRGMDVIPEAIADARKNAKRHGFTNTKYEAGKAEQWLPKWVKE------- 380 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILSTTHTI 341 +R I VDPPR+G DD + + ++Y+SCNP SL RD+ L ++ + Sbjct: 381 -----GWRPDVIVVDPPRTGCDDKLLETILKVKPKQVVYVSCNPSSLARDVQALMKSYEV 435 Query: 342 ERLALFDQFPYTRHMECGVLLVRK 365 E + D FP+T H+E V LVRK Sbjct: 436 EYVQPVDMFPHTAHVENVVKLVRK 459 >gi|229148824|ref|ZP_04277072.1| Uncharacterized RNA methyltransferase [Bacillus cereus m1550] gi|228634618|gb|EEK91199.1| Uncharacterized RNA methyltransferase [Bacillus cereus m1550] Length = 459 Score = 295 bits (756), Expect = 6e-78, Method: Composition-based stats. Identities = 83/384 (21%), Positives = 159/384 (41%), Gaps = 32/384 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ------IFRSEPIHYRMRAEFHIWHDG 55 L Y++QL +K D + Q + +++ + P HYR +++ + Sbjct: 88 GCQLQHLDYKEQLNQKRDIVVQAFEKYMKNSMEEKICPTLGMENPWHYRNKSQLQVGRKD 147 Query: 56 DDLYHIMFDQQTKERMRIDYFMP-------GSLLINALMIEMMATIRLEPLLRAKLFQID 108 + + ++ Q + + + I + M + ++ ++ ++ +I E + + I Sbjct: 148 EKVITGLYKQNSHQLIDIAHCMIQHKATNEATKVVRRILEKLNVSIYNEKKQKGLVRTIV 207 Query: 109 YLTS-QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY- 166 T+ Q+ + VTLI + + ++ + A K +Q + + I D+ + Sbjct: 208 TRTAVQTGEVQVTLITTKEELPNKEQFIAEVQKQMPAVKSIMQNVNWRKTSVIFGDKTFK 267 Query: 167 --VDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGNGNF 223 E + L + +F Q N V + E AA +++ YCG G Sbjct: 268 LAGKEVIQETLGDLSFELSARAFFQLNPEQTVVLYNEAKKAAALTGNEKIVDAYCGVGTI 327 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 L LA V +++ ++ AR N + N K ++++ +E Sbjct: 328 GLWLANDAAEVRGMDVIPEAIADARKNAKRHGFTNTKYEAGKAEQWLPKWVKE------- 380 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILSTTHTI 341 +R I VDPPR+G DD + + ++Y+SCNP SL RD+ L ++ + Sbjct: 381 -----GWRPDVIVVDPPRTGCDDKLLETILKVKPKQVVYVSCNPSSLARDVQALMKSYEV 435 Query: 342 ERLALFDQFPYTRHMECGVLLVRK 365 E + D FP+T H+E V LVRK Sbjct: 436 EYVQPVDMFPHTAHVENVVKLVRK 459 >gi|42779622|ref|NP_976869.1| RNA methyltransferase [Bacillus cereus ATCC 10987] gi|118476178|ref|YP_893329.1| tRNA (uracil-5-)-methyltransferase [Bacillus thuringiensis str. Al Hakam] gi|196045225|ref|ZP_03112457.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus 03BB108] gi|225862467|ref|YP_002747845.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus 03BB102] gi|229182811|ref|ZP_04310050.1| Uncharacterized RNA methyltransferase [Bacillus cereus BGSC 6E1] gi|229194804|ref|ZP_04321591.1| Uncharacterized RNA methyltransferase [Bacillus cereus m1293] gi|51316697|sp|Q73E18|Y542_BACC1 RecName: Full=Uncharacterized RNA methyltransferase BCE_0542 gi|42735538|gb|AAS39477.1| RNA methyltransferase, TrmA family [Bacillus cereus ATCC 10987] gi|118415403|gb|ABK83822.1| 23S rRNA m(5)U-1939 methyltransferase [Bacillus thuringiensis str. Al Hakam] gi|196023809|gb|EDX62484.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus 03BB108] gi|225790988|gb|ACO31205.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus 03BB102] gi|228588652|gb|EEK46683.1| Uncharacterized RNA methyltransferase [Bacillus cereus m1293] gi|228600691|gb|EEK58272.1| Uncharacterized RNA methyltransferase [Bacillus cereus BGSC 6E1] Length = 459 Score = 295 bits (756), Expect = 6e-78, Method: Composition-based stats. Identities = 84/384 (21%), Positives = 158/384 (41%), Gaps = 32/384 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ------IFRSEPIHYRMRAEFHIWHDG 55 L Y++QL +K D + Q + L+ + P HYR +++ + Sbjct: 88 GCQLQHLDYKEQLNQKRDIVVQAFQKYMNNGLEEKIRPTLGMENPWHYRNKSQLQVGRKD 147 Query: 56 DDLYHIMFDQQTKERMRIDYFMP-------GSLLINALMIEMMATIRLEPLLRAKLFQID 108 + + ++ Q + + + I + M + ++ ++ ++ +I E + + I Sbjct: 148 EKVITGLYKQNSHQLIDIAHCMIQHKATNEATKVVRRILEKLNVSIYNEKKQKGLVRTIV 207 Query: 109 YLTS-QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY- 166 T+ Q+ + VTLI + + ++ + A K +Q + + I D+ + Sbjct: 208 TRTAVQTGEVQVTLITTKEELPNKEQFIAEVQKQMPAVKSIMQNVNWRKTSVIFGDKTFK 267 Query: 167 --VDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGNGNF 223 E + L + +F Q N V + E AA +++ YCG G Sbjct: 268 LAGKEVIQETLGDLSFELSARAFFQLNPEQTVVLYNEAKKAAALTGNEKIVDAYCGVGTI 327 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 L LA V +++ ++ AR N + N K ++++ +E Sbjct: 328 GLWLANDAAEVRGMDVIPEAIADARKNAKRHGFTNTKYEAGKAEQWLPKWVKE------- 380 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILSTTHTI 341 +R I VDPPR+G DD + + ++Y+SCNP SL RD+ L ++ + Sbjct: 381 -----GWRPDVIVVDPPRTGCDDKLLETILKVKPKQVVYVSCNPSSLARDVQALMKSYEV 435 Query: 342 ERLALFDQFPYTRHMECGVLLVRK 365 E + D FP+T H+E V LVRK Sbjct: 436 EYVQPVDMFPHTAHVENVVKLVRK 459 >gi|229137158|ref|ZP_04265777.1| Uncharacterized RNA methyltransferase [Bacillus cereus BDRD-ST26] gi|228646330|gb|EEL02545.1| Uncharacterized RNA methyltransferase [Bacillus cereus BDRD-ST26] Length = 459 Score = 295 bits (756), Expect = 6e-78, Method: Composition-based stats. Identities = 79/386 (20%), Positives = 149/386 (38%), Gaps = 40/386 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56 L YE QL K ++R +M + + P YR +A+ I Sbjct: 87 GCQLQHLTYEGQLQAKEKQVRDVMQRIGGLSDVPVHPVLGMKNPWVYRNKAQVPIGEREG 146 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEM-----------MATIRLEPLLRAKLF 105 L + Q T + + ++ + + + L+ E+ R + LR + Sbjct: 147 GLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGISAYNEERNKGTLRHVMA 206 Query: 106 QIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161 + +T + +T L + + + ++ + + + +KT + Sbjct: 207 RYGQVTGEIMLVFITRTAELPNKKAIIEEIAAKFPEVKSIVQNVNTKRTNVIFGDKTTVL 266 Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220 +Y+ + + + + SF Q N + + L A +++ YCG Sbjct: 267 YGSEYIYDFIG----DIKFAISARSFYQVNPEQTKVLYDKTLEYAKLDGNETVIDAYCGI 322 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G+ SL LA+ +V VEI ++E A+ N A N++ N + ++ +E Sbjct: 323 GSISLFLAQKAKKVYGVEIVPEAIEDAKRNAALNNMTNAEFGVGEAEVVIPKWYKE---- 378 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST- 337 T+ VDPPR G D+A + + ++Y+SCNP +L RDL +L Sbjct: 379 --------GVIADTMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLARDLKVLEEG 430 Query: 338 THTIERLALFDQFPYTRHMECGVLLV 363 + + + D FP+T H+EC L Sbjct: 431 GYKTQEVQPVDMFPHTTHVECVAWLS 456 >gi|49476818|ref|YP_034754.1| tRNA (uracil-5-)-methyltransferase [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52144821|ref|YP_082009.1| RNA methyltransferase [Bacillus cereus E33L] gi|196034722|ref|ZP_03102130.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus W] gi|196040108|ref|ZP_03107410.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus NVH0597-99] gi|218231359|ref|YP_002365269.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus B4264] gi|218901630|ref|YP_002449464.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus AH820] gi|228925680|ref|ZP_04088767.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228944240|ref|ZP_04106616.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228956903|ref|ZP_04118684.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis serovar pakistani str. T13001] gi|229120088|ref|ZP_04249340.1| Uncharacterized RNA methyltransferase [Bacillus cereus 95/8201] gi|229143212|ref|ZP_04271644.1| Uncharacterized RNA methyltransferase [Bacillus cereus BDRD-ST24] gi|296501251|ref|YP_003662951.1| tRNA(Uracil-5-)-methyltransferase [Bacillus thuringiensis BMB171] gi|300119050|ref|ZP_07056761.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus SJ1] gi|49328374|gb|AAT59020.1| tRNA (uracil-5-)-methyltransferase (RNA methyltransferase, TrmA family) [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51978290|gb|AAU19840.1| RNA methyltransferase, TrmA family [Bacillus cereus E33L] gi|195992765|gb|EDX56725.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus W] gi|196028963|gb|EDX67568.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus NVH0597-99] gi|218159316|gb|ACK59308.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus B4264] gi|218538073|gb|ACK90471.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus AH820] gi|228640293|gb|EEK96691.1| Uncharacterized RNA methyltransferase [Bacillus cereus BDRD-ST24] gi|228663326|gb|EEL18914.1| Uncharacterized RNA methyltransferase [Bacillus cereus 95/8201] gi|228802746|gb|EEM49582.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis serovar pakistani str. T13001] gi|228815391|gb|EEM61636.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228833955|gb|EEM79505.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|296322303|gb|ADH05231.1| tRNA(Uracil-5-)-methyltransferase [Bacillus thuringiensis BMB171] gi|298723666|gb|EFI64397.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus SJ1] Length = 459 Score = 295 bits (756), Expect = 7e-78, Method: Composition-based stats. Identities = 83/384 (21%), Positives = 159/384 (41%), Gaps = 32/384 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ------IFRSEPIHYRMRAEFHIWHDG 55 L Y++QL +K D + Q + +++ + P HYR +++ + Sbjct: 88 GCQLQHLDYKEQLNQKRDIVVQAFEKYMKNSMEEKIRPTLGMENPWHYRNKSQLQVGRKD 147 Query: 56 DDLYHIMFDQQTKERMRIDYFMP-------GSLLINALMIEMMATIRLEPLLRAKLFQID 108 + + ++ Q + + + I + M + ++ ++ ++ +I E + + I Sbjct: 148 EKVITGLYKQNSHQLIDIAHCMIQHKATNEATKVVRRILEKLNVSIYNEKKQKGLVRTIV 207 Query: 109 YLTS-QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY- 166 T+ Q+ + VTLI + + ++ + A K +Q + + I D+ + Sbjct: 208 TRTAVQTGEVQVTLITTKEELPNKEQFIAEVQKQMPAVKSIMQNVNWRKTSVIFGDKTFK 267 Query: 167 --VDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGNGNF 223 E + L + +F Q N V + E AA +++ YCG G Sbjct: 268 LAGKEVIQETLGDLSFELSARAFFQLNPEQTVVLYNEAKKAAALTGNEKIVDAYCGVGTI 327 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 L LA V +++ ++ AR N + N K ++++ +E Sbjct: 328 GLWLANDAAEVRGMDVIPEAIADARKNAKRHGFTNTKYEAGKAEQWLPKWVKE------- 380 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILSTTHTI 341 +R I VDPPR+G DD + + ++Y+SCNP SL RD+ L ++ + Sbjct: 381 -----GWRPDVIVVDPPRTGCDDKLLETILKVKPKQVVYVSCNPSSLARDVQALMKSYEV 435 Query: 342 ERLALFDQFPYTRHMECGVLLVRK 365 E + D FP+T H+E V LVRK Sbjct: 436 EYVQPVDMFPHTAHVENVVKLVRK 459 >gi|229089548|ref|ZP_04220815.1| Uncharacterized RNA methyltransferase [Bacillus cereus Rock3-42] gi|228693764|gb|EEL47460.1| Uncharacterized RNA methyltransferase [Bacillus cereus Rock3-42] Length = 459 Score = 295 bits (756), Expect = 7e-78, Method: Composition-based stats. Identities = 83/384 (21%), Positives = 159/384 (41%), Gaps = 32/384 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ------IFRSEPIHYRMRAEFHIWHDG 55 L Y++QL +K D + Q + +++ + P HYR +++ + Sbjct: 88 GCQLQHLDYKEQLNQKRDIVVQAFEKYMKNSMEEKIRPTLGMENPWHYRNKSQLQVGRKD 147 Query: 56 DDLYHIMFDQQTKERMRIDYFMP-------GSLLINALMIEMMATIRLEPLLRAKLFQID 108 + + ++ Q + + + I + M + ++ ++ ++ +I E + + I Sbjct: 148 EKVITGLYKQNSHQLIDIAHCMIQHKATNEATKVVRRILEKLNVSIYNEKKQKGLVRTIV 207 Query: 109 YLTS-QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY- 166 T+ Q+ + VTLI + + ++ + A K +Q + + I D+ + Sbjct: 208 TRTAVQTGEVQVTLITTKEELPNKEQFIAEVQKQMPAVKSIMQNVNWRKTSVIFGDKTFK 267 Query: 167 --VDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGNGNF 223 E + L + +F Q N V + E AA +++ YCG G Sbjct: 268 LAGKEVIQETLGDLSFELSARAFFQLNPEQTVVLYNEAKKAAALTGNEKIVDAYCGVGTI 327 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 L LA V +++ ++ AR N + N K ++++ +E Sbjct: 328 GLWLANDAAEVRGMDVIPEAIADARKNAKRHGFTNTKYEAGKAEQWLPKWVKE------- 380 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILSTTHTI 341 +R I VDPPR+G DD + + ++Y+SCNP SL RD+ L ++ + Sbjct: 381 -----GWRPDVIVVDPPRTGCDDKLLETILKVKPKQVVYVSCNPSSLARDVQALMKSYEV 435 Query: 342 ERLALFDQFPYTRHMECGVLLVRK 365 E + D FP+T H+E V LVRK Sbjct: 436 EYVQPVDMFPHTAHVENVVKLVRK 459 >gi|212638138|ref|YP_002314658.1| methyltransferase [Anoxybacillus flavithermus WK1] gi|212559618|gb|ACJ32673.1| Methyltransferase [Anoxybacillus flavithermus WK1] Length = 456 Score = 295 bits (756), Expect = 7e-78, Method: Composition-based stats. Identities = 75/386 (19%), Positives = 149/386 (38%), Gaps = 40/386 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56 L YE QL K +++++ + + ++P YR +A+ + Sbjct: 83 GCQLQHLSYEGQLKAKHKHVKEVLARIGKIEDVTVHPVLGMNDPWRYRNKAQVPVGEREG 142 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLF 105 L + +++ + + +D + + I + LLR + Sbjct: 143 GLVAGFYKERSHDIIDMDTCLIQQEMNDIVVQTVKQICEQYNIPAYNEQTHKGLLRHIMA 202 Query: 106 QIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161 + T + ++T L + + +A + ++ + + + +T++ Sbjct: 203 RYGATTKEVMVVLITRTEELPHKNKIVEAIVKRVPNVKSIVQNINPKRTNVIMGEQTRVL 262 Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220 +Y+ + + + + SF Q N + E L A + +++ YCG Sbjct: 263 WGSEYIYDYIG----DIQFAISARSFYQVNPEQTKVLYEKALEYAELTGEETVIDAYCGI 318 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G SL LA++ +V VE+ ++E A+ N N + NV+ ++ Sbjct: 319 GTISLFLAKNAKKVYGVEVVPEAIEDAKRNAELNGMTNVEFAVGEAEVVIPKWYE----- 373 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILS-T 337 + I VDPPR G D++ + + A ++Y+SCNP +L RDL IL Sbjct: 374 -------QGVKADCIVVDPPRKGCDESLLQTIIAMKPKRVVYVSCNPATLARDLRILEDG 426 Query: 338 THTIERLALFDQFPYTRHMECGVLLV 363 + + D FP+T H+EC V L Sbjct: 427 GYKTLEVQPVDMFPHTVHVECVVKLE 452 >gi|315282728|ref|ZP_07871069.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria marthii FSL S4-120] gi|313613628|gb|EFR87431.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria marthii FSL S4-120] Length = 453 Score = 295 bits (756), Expect = 7e-78, Method: Composition-based stats. Identities = 74/383 (19%), Positives = 144/383 (37%), Gaps = 38/383 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWHDGDD 57 +L YE QL K +++ + M N+++ P YR +++ + Sbjct: 84 GCSLQHLSYEGQLEFKRNQVEETMKRIGKLNVEVPAALGMENPWRYRNKSQVPVGFVNGK 143 Query: 58 LYHIMFDQQTKERMRIDYFMP-----------GSLLINALMIEMMATIRLEPLLRAKLFQ 106 L + +++ E + + + ++ E + +R + + Sbjct: 144 LTAGFYQKRSHEIIDMSTCLIHNEKGDFAVQKAREILAKYGTEPYDEKTGKGDIRHIMTR 203 Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWREC---AIRLRDALHARKYQIQLIGRANKTKICLD 163 + T Q VT D + L + + ++TK Sbjct: 204 FAHTTGQLMLVFVTTKERLPFKDEIVRDLTEQLELTSIVQNINPHKTNVIFGDRTKTLWG 263 Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELYCGNGN 222 +D +++ + + + SF Q N + + + AA + +++ YCG G+ Sbjct: 264 KDIIEDTIH----GIRFAISARSFYQVNPLQTEVLYQQAIDAAELTGEETVIDAYCGIGS 319 Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282 SL LA+ V VEI +++ AR N N + N ++E A + Sbjct: 320 ISLCLAKKAKHVYGVEIVDQAIQDARANAELNELTNTTFETGKAEEVIPAWYKA------ 373 Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILS-TTH 339 + VDPPR G D+ + + A ++Y+SCNP +L RD+ IL+ + Sbjct: 374 ------GIVADVLVVDPPRKGCDEKLLETILAMKPKKVVYVSCNPGTLARDMKILTDGGY 427 Query: 340 TIERLALFDQFPYTRHMECGVLL 362 +++ D FP T H+E +L Sbjct: 428 VAKKVQPVDMFPMTTHIEAVTVL 450 >gi|317127193|ref|YP_004093475.1| RNA methyltransferase, TrmA family [Bacillus cellulosilyticus DSM 2522] gi|315472141|gb|ADU28744.1| RNA methyltransferase, TrmA family [Bacillus cellulosilyticus DSM 2522] Length = 457 Score = 295 bits (756), Expect = 7e-78, Method: Composition-based stats. Identities = 76/384 (19%), Positives = 139/384 (36%), Gaps = 32/384 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQV-----PNLQIFRSEPIHYRMRAEFHIWHDGD 56 L Y+ QL K + ++ + + EP YR +A+ + Sbjct: 85 GCQLQHLSYDGQLKHKQKHVMDVLSRIGGMNDVHVHPTLGMEEPWRYRNKAQVPFGEEEG 144 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSL-------LINALMIEMMATIRLEPLLRAKLFQIDY 109 L + +++ + + +D M L+ + + E + L + Sbjct: 145 GLVAGFYAERSHKIIDMDRCMIQQEENDEVVMLVKDIAKKYGVRGYDEEKHKGTLRHVVT 204 Query: 110 LTSQ-SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD--- 165 + + + +V L+ + +RD+L K +Q I I D+ Sbjct: 205 RYGKNTGELMVVLVTKGKELPNKKNIVQDIRDSLPKVKSIVQNINPKRTNVIFGDKTEVL 264 Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNFS 224 + +E + + + SF Q N + L A +++ YCG G S Sbjct: 265 WGEEVIYDTIGDIKFAISARSFYQVNPTQTEVLYNKTLEFAGLSGNETVIDAYCGIGTIS 324 Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284 L LA+ V VEI ++ A+ N N + NV +++ Sbjct: 325 LFLAQRAKHVYGVEIVPEAISDAKKNAQLNGIENVDFAVGEAEKVMPWWYA--------- 375 Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILST-THTI 341 R I VDPPR G D+ + + ++Y+SCNP +L RDL L + Sbjct: 376 ---QGIRADVIVVDPPRKGCDEELLETIVKMKPARVVYVSCNPATLARDLKYLEGRGYKT 432 Query: 342 ERLALFDQFPYTRHMECGVLLVRK 365 + + D FP+T H+E ++ R+ Sbjct: 433 KEVQPVDMFPHTMHVETVTVIYRE 456 >gi|332983359|ref|YP_004464800.1| 23S rRNA m(5)U-1939 methyltransferase [Mahella australiensis 50-1 BON] gi|332701037|gb|AEE97978.1| 23S rRNA m(5)U-1939 methyltransferase [Mahella australiensis 50-1 BON] Length = 456 Score = 295 bits (755), Expect = 7e-78, Method: Composition-based stats. Identities = 77/387 (19%), Positives = 150/387 (38%), Gaps = 40/387 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL-----QIFRSEPIHYRMRAEFHIWHDGD 56 + Y+ QLA K ++ + + I P HYR +A+ + Sbjct: 83 GCHIQAMAYDAQLAYKTRHVKDALQRIGGFDDVSVLDTIGMERPWHYRNKAQLPVGVFSG 142 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINA-----------LMIEMMATIRLEPLLRAKLF 105 F T + + ID ++A + + + + LLR + Sbjct: 143 RPVMGFFAAGTHDIVDIDTCPIQHPAVDAAIKAVKDYVSSYNVAVYDEMTGKGLLRHIMV 202 Query: 106 QIDYLTSQSDQAIV----TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161 ++ + + Q V ++ + + D R+ L + + + ++ K+ Sbjct: 203 RVGFNSGQVMVVPVINGDSIPHAKEFTDMLRQNIDGLASVVLNINRRRTNVILGSQCKVI 262 Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220 D++ + L L ++ SF Q N + + A +L+ YCG Sbjct: 263 YGNDHIMDTLC----GLTFKISPLSFFQVNPRQTEVLYTKAIEYAGLDGTQTVLDAYCGI 318 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G SL+ A+ ++ +E + +V+ AR N N ++NV+ + +++ ++ Sbjct: 319 GTISLIAAQKAAKIYGIEEIQQAVDDARENARLNDISNVEFICAKAEDAIGRFIEDK--- 375 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCRDLSILS-T 337 R I +DPPR G D + V+ P ++Y+SCNP +L RD+ L+ Sbjct: 376 ---------VRIDVIIMDPPRKGCDKGFLETAVRLCPERMVYVSCNPATLARDMRFLADH 426 Query: 338 THTIERLALFDQFPYTRHMECGVLLVR 364 + + D FP+T H+E VL+ R Sbjct: 427 GYKATAVQPVDMFPHTTHVETVVLMSR 453 >gi|225376462|ref|ZP_03753683.1| hypothetical protein ROSEINA2194_02104 [Roseburia inulinivorans DSM 16841] gi|225211838|gb|EEG94192.1| hypothetical protein ROSEINA2194_02104 [Roseburia inulinivorans DSM 16841] Length = 475 Score = 295 bits (755), Expect = 7e-78, Method: Composition-based stats. Identities = 83/401 (20%), Positives = 145/401 (36%), Gaps = 41/401 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ---------VPNLQIFRSEPIHYRMRAEFHIW 52 + Y +QL K ++++ ++ V + EP YR +A+F I Sbjct: 79 GCQIQAMDYAKQLEFKENKVKNNLVRLGGFDADFVDSVTEPIVGMEEPYRYRNKAQFPIG 138 Query: 53 HDGDDLY-HIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLL 100 D D + +T + + M G + IE L+ Sbjct: 139 KDKDGNIIAGFYASRTHSIIPVKDCMLGVAENREILDAILSYMRECHIEPYDETTGRGLV 198 Query: 101 RAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALH---ARKYQIQLIGRANK 157 R L + + T + +V + E + + + + Sbjct: 199 RHALIRYGFTTKEIMVCLVVNGRKLPAQNVLVEKLQVISGMTSISININQKNTNVILGEQ 258 Query: 158 TKICLDRDYVDERLTV--------AGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKG 208 T+ + Y+ + + + G+ + Y SF Q N + L A Sbjct: 259 TEAIWGQSYITDYIHLRDCTNFERTGKAISYHISPQSFYQVNPEQTEKLYSLALEYAGLT 318 Query: 209 IQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268 + + +LYCG G SL LA V VEI ++ A+ N N +N + ++E Sbjct: 319 GKESVWDLYCGIGTISLFLAGKAGHVYGVEIVPQAIADAKDNAKRNGFSNTEFFVGKAEE 378 Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPD 326 E + + + I VDPPR G D+ + + I+Y+SC+ Sbjct: 379 VLPEFYAEHKNEKTDML-----HPDVIVVDPPRKGCDEKCLETILLMKPERIVYVSCDSA 433 Query: 327 SLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRKP 366 +L RDL +L + ++R+ DQF +T H+EC LL RK Sbjct: 434 TLARDLKVLAEGGYEVKRVRAVDQFAHTTHVECVTLLQRKD 474 >gi|283954401|ref|ZP_06371921.1| LOW QUALITY PROTEIN: tRNA (uracil-5-)-methyltransferase [Campylobacter jejuni subsp. jejuni 414] gi|283794018|gb|EFC32767.1| LOW QUALITY PROTEIN: tRNA (uracil-5-)-methyltransferase [Campylobacter jejuni subsp. jejuni 414] Length = 354 Score = 295 bits (755), Expect = 8e-78, Method: Composition-based stats. Identities = 130/352 (36%), Positives = 204/352 (57%), Gaps = 8/352 (2%) Query: 14 LAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRI 73 L EK ++ F + ++F S+ HYR R E +H+ D L++ MFD + K++ I Sbjct: 9 LDEKHSFVKTYFKEFYTKDFKLFSSKAKHYRTRVELSFYHENDTLFYAMFDSKNKKKYII 68 Query: 74 DYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRE 133 + I M +++ +R + L+ KLF +++LT++ + +I TL+YH+ ++D ++ Sbjct: 69 KHLDFADEKICTFMPKLLEYLRQDDRLKEKLFGVEFLTTKQELSI-TLLYHKNIED-IKQ 126 Query: 134 CAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAG 193 L + LH I LI R+ K+ + + + L + R + Y + F QPN Sbjct: 127 NLENLSNILH-----INLIARSKGKKLVFKTENLRQTLNIQDREIFYEFNNDCFIQPNTA 181 Query: 194 INVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIA 252 IN M+ WV + DLLELYCG GNF+L LA+ F +VLA EI+K ++ A N Sbjct: 182 INEKMITWVYEILSTQKRIDLLELYCGYGNFTLALAQLFFKVLATEISKNNINFALKNCK 241 Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312 N+ N+ R+SS+E + A+++ER+F RL+DI + + F + VDPPR+GLD + + +V Sbjct: 242 LNNTTNIHFARLSSEELSLAIKKERDFFRLRDIQLDDFNFSHVLVDPPRAGLDKSVIDLV 301 Query: 313 QAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 + Y +I+YISCNP +L +L LS TH IE ALFDQF T H+ECGV L + Sbjct: 302 KKYENIIYISCNPITLKENLKELSLTHKIENFALFDQFVNTPHLECGVFLSK 353 >gi|164686694|ref|ZP_02210722.1| hypothetical protein CLOBAR_00289 [Clostridium bartlettii DSM 16795] gi|164604084|gb|EDQ97549.1| hypothetical protein CLOBAR_00289 [Clostridium bartlettii DSM 16795] Length = 466 Score = 295 bits (755), Expect = 9e-78, Method: Composition-based stats. Identities = 80/390 (20%), Positives = 162/390 (41%), Gaps = 41/390 (10%) Query: 2 SGTLLID-QYEQQLAEKVDRLRQMMLAFQVPNLQI-----FRSEPIHYRMRAEFHIWHDG 55 G + + Y++QL K + ++Q++ + + P YR +A+F I Sbjct: 93 GGCQIQELDYQKQLDVKTNEVKQVISRIGKLDDVVIHDTLGMEHPFRYRNKAQFPIQKKD 152 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGSLL-----------INALMIEMMATIRLEPLLRAKL 104 + + +++ + + D + + I A + + + LLR + Sbjct: 153 NMPVIGFYKKKSHDLISTDECIIQHEVNDKIIKIIKTYIRAYNVSIYDEKTHKGLLRHLV 212 Query: 105 FQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR 164 ++ + T + ++ L+ + +E A L++ + K + + KT + L + Sbjct: 213 TKVGFTTG---EVMIVLVANGKKLPYLKELASVLKENIPGFKTLVVNVNT-QKTNVILGK 268 Query: 165 D----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCG 219 + Y D + L++ SF Q N + L A G + ++YCG Sbjct: 269 ENIVAYGDGMIRDYIGELVFEISPLSFFQVNPLQTEVLYNKALEYANLGENDTVFDIYCG 328 Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279 G SL LA+ +V +EI + +++ A+ N N+++NV+ ++E M +E Sbjct: 329 IGTISLFLAQKAKKVYGIEIVEDAIKDAKRNAKINNMDNVEFYVGKAEEVVPKMYKE--- 385 Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST 337 R + VDPPR G D+ + + ++Y+SCNP +L RDL+ L+ Sbjct: 386 ---------GKRANVVVVDPPRKGCDEKVLDTIVSMEPDRVVYVSCNPSTLARDLAYLNE 436 Query: 338 -THTIERLALFDQFPYTRHMECGVLLVRKP 366 + + D FP++ H+E L ++ Sbjct: 437 RGYKCHEIQPVDMFPHSVHVENVAWLSKEK 466 >gi|228989612|ref|ZP_04149596.1| Uncharacterized RNA methyltransferase [Bacillus pseudomycoides DSM 12442] gi|228770149|gb|EEM18729.1| Uncharacterized RNA methyltransferase [Bacillus pseudomycoides DSM 12442] Length = 461 Score = 295 bits (755), Expect = 9e-78, Method: Composition-based stats. Identities = 81/386 (20%), Positives = 160/386 (41%), Gaps = 32/386 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ------IFRSEPIHYRMRAEFHIWHDG 55 L Y++QL +K D + Q + +++ + P HYR +++ + Sbjct: 88 GCQLQHLDYKEQLNQKRDIVVQAFEKYMNGSMEADIRPTLGMGNPWHYRNKSQLQVGRKD 147 Query: 56 DDLYHIMFDQQTKERMRIDYFMP-------GSLLINALMIEMMATIRLEPLLRAKLFQID 108 + + ++ Q + + + I + M + ++ ++ ++ +I E + + I Sbjct: 148 EKVITGLYKQNSHQLIDISHCMIQHKATNEATKVVRRILEKLNISIYNEKKQKGLVRTIV 207 Query: 109 YLTS-QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY- 166 + Q+ + VTLI + + ++ + K +Q + + I D+ + Sbjct: 208 TRAAVQTGEVQVTLITTKEELPNKEQFIAEVQKQMPTVKSIMQNVNWRKTSVIFGDKTFN 267 Query: 167 --VDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGNGNF 223 E + L + +F Q N V + E AA + +++ YCG G Sbjct: 268 LAGKEVIQETLGDLSFELSARAFFQLNPEQTVVLYNEAKKAAGLTGKEKIVDAYCGVGTI 327 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 L LA V +++ ++E A+ N + N K ++++ +E Sbjct: 328 GLWLANDAAEVRGMDVIPEAIEDAKKNAKRHGFTNTKYEAGKAEQWLPKWVKE------- 380 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILSTTHTI 341 +R I VDPPR+G DD + + ++Y+SCNP SL RD+ L ++ + Sbjct: 381 -----GWRPDVIVVDPPRTGCDDKLLETILKVQPKQVVYVSCNPSSLARDVKALMKSYEV 435 Query: 342 ERLALFDQFPYTRHMECGVLLVRKPS 367 E + D FP+T H+E V LVRK + Sbjct: 436 EYVQPVDMFPHTAHVENVVRLVRKEN 461 >gi|229119979|ref|ZP_04249234.1| Uncharacterized RNA methyltransferase [Bacillus cereus 95/8201] gi|228663445|gb|EEL19030.1| Uncharacterized RNA methyltransferase [Bacillus cereus 95/8201] Length = 458 Score = 295 bits (755), Expect = 9e-78, Method: Composition-based stats. Identities = 79/386 (20%), Positives = 149/386 (38%), Gaps = 40/386 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56 L YE QL K ++R +M + + P YR +A+ I Sbjct: 87 GCQLQHLTYEGQLQAKEKQVRDVMQRIGGLGDVPVHPVLGMKNPWVYRNKAQVPIGEREG 146 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEM-----------MATIRLEPLLRAKLF 105 L + Q T + + ++ + + + L+ E+ R + LR + Sbjct: 147 GLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGISAYNEERNKGTLRHVMA 206 Query: 106 QIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161 + +T + +T L + + + ++ + + + +KT + Sbjct: 207 RYGQVTGEIMLVFITRTAELPNKKAIIEEIAAKFPEVKSIVQNVNPKRTNVIFGDKTTVL 266 Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220 +Y+ + + + + SF Q N + + L A +++ YCG Sbjct: 267 YGSEYIYDFIG----DIKFAISARSFYQVNPEQTKVLYDKTLEYAKLDGNETVIDAYCGI 322 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G+ SL LA+ +V VEI ++E A+ N A N++ N + ++ +E Sbjct: 323 GSISLFLAKKAKKVYGVEIVPEAIEDAKRNAALNNMTNAEFGVGEAEVVIPKWYKE---- 378 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST- 337 T+ VDPPR G D+A + + ++Y+SCNP +L RDL +L Sbjct: 379 --------GVIADTMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLARDLKVLEEG 430 Query: 338 THTIERLALFDQFPYTRHMECGVLLV 363 + + + D FP+T H+EC L Sbjct: 431 GYKTQEVQPVDMFPHTTHVECVAWLK 456 >gi|212638180|ref|YP_002314700.1| tRNA (Uracil-5-)-methyltransferase fused to TRAM domain [Anoxybacillus flavithermus WK1] gi|212559660|gb|ACJ32715.1| tRNA (Uracil-5-)-methyltransferase fused to TRAM domain [Anoxybacillus flavithermus WK1] Length = 452 Score = 295 bits (755), Expect = 9e-78, Method: Composition-based stats. Identities = 83/389 (21%), Positives = 150/389 (38%), Gaps = 41/389 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54 L Y QL K D + Q + N++ I +P HYR +++F + Sbjct: 80 GCQLQHLDYNAQLEAKRDIVTQALERHSRLNIEALDIRPTIGMDDPWHYRNKSQFQVGVK 139 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGSLLINA-----------LMIEMMATIRLEPLLRAK 103 + ++ + E + ID + N L I + + ++R Sbjct: 140 KGHVIAGLYSMNSHELVDIDRCLIQHDATNRVTTVVKAILQDLRIPVYHERKKTGVVRTI 199 Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIR----LRDALHARKYQIQLIGRANKTK 159 + ++ + T +VT + + R ++ Q + ++T Sbjct: 200 VARVGFYTGDVQLVVVTATKELPRKELFVAEVKRRLPEVKSIAQNINGQKTSLIFGDETI 259 Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYC 218 + Y+ E L L + +F Q N + + + V A + + +++ YC Sbjct: 260 VLAGEPYIQEVLG----DLSFELSARAFFQLNPIQTIKLYDEVKKAAALTKNERVVDAYC 315 Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278 G G L LAR V ++ +++ AR N + NV ++E +E Sbjct: 316 GVGTIGLWLAREAKEVRGMDTIPEAIDDARQNAERHGFTNVMYAVGKAEELLPKWVKE-- 373 Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILS 336 ++ I VDPPR+G D A + + ++Y+SCNP SL RD+ L+ Sbjct: 374 ----------GWKPDVIVVDPPRTGCDHALLKTILQVKPKTVVYVSCNPSSLARDIDTLT 423 Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVRK 365 + +E + FD FP+T H+E LVRK Sbjct: 424 KQYRVEYIQPFDLFPHTAHVESVAKLVRK 452 >gi|228995690|ref|ZP_04155353.1| Uncharacterized RNA methyltransferase [Bacillus mycoides Rock3-17] gi|229003319|ref|ZP_04161149.1| Uncharacterized RNA methyltransferase [Bacillus mycoides Rock1-4] gi|228757937|gb|EEM07152.1| Uncharacterized RNA methyltransferase [Bacillus mycoides Rock1-4] gi|228764067|gb|EEM12951.1| Uncharacterized RNA methyltransferase [Bacillus mycoides Rock3-17] Length = 465 Score = 294 bits (754), Expect = 9e-78, Method: Composition-based stats. Identities = 79/386 (20%), Positives = 147/386 (38%), Gaps = 40/386 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56 L YE QL K ++R +M + + P YR +A+ I Sbjct: 94 GCQLQHLTYEGQLKAKEKQVRDVMQRIGGLHDVPVHPVLGMENPWVYRNKAQVPIGEREG 153 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-----------LRAKLF 105 L + Q T + + ++ + + +AL+ E+ + LR + Sbjct: 154 GLVAGFYRQGTHDIINMETCLIQAEENDALIQEVKRICEKHGITAYNEERHKGTLRHVMA 213 Query: 106 QIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161 + +T + +T L + + + ++ + + + + T + Sbjct: 214 RYGQVTGEIMLVFITRTAELPNKKAIIEEITTKFPNVKSIVQNVNTKRTNVIFGDTTTVL 273 Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220 +Y+ + + + + SF Q N + + L A +++ YCG Sbjct: 274 YGSEYIYDFIG----DIKFAISARSFYQVNREQTKVLYDKALEYAKLDGNETVIDAYCGI 329 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G+ SL LA+ +V VEI ++E A N A N++ N + ++ +E Sbjct: 330 GSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFAVGEAEVVIPNWYKE---- 385 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST- 337 TI VDPPR G D+A + + ++Y+SCNP +L RDL +L Sbjct: 386 --------GVIADTIVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLARDLKVLEEG 437 Query: 338 THTIERLALFDQFPYTRHMECGVLLV 363 + + + D FP+T H+EC L Sbjct: 438 GYKTQEVQPVDMFPHTTHVECVAWLE 463 >gi|206974173|ref|ZP_03235090.1| RNA methyltransferase, TrmA family [Bacillus cereus H3081.97] gi|217957891|ref|YP_002336435.1| RNA methyltransferase, TrmA family [Bacillus cereus AH187] gi|222094090|ref|YP_002528147.1| RNA methyltransferase protein, trma family (tRNA (uracil-5-)-methyltransferase) [Bacillus cereus Q1] gi|206747413|gb|EDZ58803.1| RNA methyltransferase, TrmA family [Bacillus cereus H3081.97] gi|217063544|gb|ACJ77794.1| RNA methyltransferase, TrmA family [Bacillus cereus AH187] gi|221238145|gb|ACM10855.1| RNA methyltransferase protein, trmA family (tRNA (uracil-5-)-methyltransferase) [Bacillus cereus Q1] Length = 458 Score = 294 bits (754), Expect = 1e-77, Method: Composition-based stats. Identities = 79/386 (20%), Positives = 149/386 (38%), Gaps = 40/386 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56 L YE QL K ++R +M + + P YR +A+ I Sbjct: 87 GCQLQHLTYEGQLQAKEKQVRDVMQRIGGLSDVPVHPVLGMKNPWVYRNKAQVPIGEREG 146 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEM-----------MATIRLEPLLRAKLF 105 L + Q T + + ++ + + + L+ E+ R + LR + Sbjct: 147 GLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGISAYNEERNKGTLRHVMA 206 Query: 106 QIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161 + +T + +T L + + + ++ + + + +KT + Sbjct: 207 RYGQVTGEIMLVFITRTAELPNKKAIIEEIAAKFPEVKSIVQNVNTKRTNVIFGDKTTVL 266 Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220 +Y+ + + + + SF Q N + + L A +++ YCG Sbjct: 267 YGSEYIYDFIG----DIKFAISARSFYQVNPEQTKVLYDKTLEYAKLDGNETVIDAYCGI 322 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G+ SL LA+ +V VEI ++E A+ N A N++ N + ++ +E Sbjct: 323 GSISLFLAQKAKKVYGVEIVPEAIEDAKRNAALNNMTNAEFGVGEAEVVIPKWYKE---- 378 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST- 337 T+ VDPPR G D+A + + ++Y+SCNP +L RDL +L Sbjct: 379 --------GVIADTMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLARDLKVLEEG 430 Query: 338 THTIERLALFDQFPYTRHMECGVLLV 363 + + + D FP+T H+EC L Sbjct: 431 GYKTQEVQPVDMFPHTTHVECVAWLK 456 >gi|229074352|ref|ZP_04207390.1| Uncharacterized RNA methyltransferase [Bacillus cereus Rock4-18] gi|228708794|gb|EEL60929.1| Uncharacterized RNA methyltransferase [Bacillus cereus Rock4-18] Length = 459 Score = 294 bits (754), Expect = 1e-77, Method: Composition-based stats. Identities = 81/384 (21%), Positives = 160/384 (41%), Gaps = 32/384 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ------IFRSEPIHYRMRAEFHIWHDG 55 L Y++QL +K D + Q + +++ + P HYR +++ + Sbjct: 88 GCQLQHLDYKEQLNQKRDIVVQAFEKYMKNSMEEKIRPTLGMENPWHYRNKSQLQVGRKD 147 Query: 56 DDLYHIMFDQQTKERMRIDYFMP-------GSLLINALMIEMMATIRLEPLLRAKLFQID 108 + + ++ Q + + + I + M + ++ ++ ++ +I E + + I Sbjct: 148 EKVITGLYKQNSHQLIDIAHCMIQHKATNEATKVVRRILEKLNVSIYNEKKQKGLVRTIV 207 Query: 109 YLTS-QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY- 166 T+ Q+ + VTLI + + ++ + A K +Q + + I D+ + Sbjct: 208 TRTAVQTGEVQVTLITTKEELPNKEQFIAEVQKQMPAVKSIMQNVNWRKTSVIFGDKTFK 267 Query: 167 --VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELYCGNGNF 223 E + L + +F Q N V + + AA +++ YCG G Sbjct: 268 LAGKEVIQETLGDLSFELSARAFFQLNPEQTVVLYDEAKKAAALTGNEKIVDAYCGVGTI 327 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 L LA V +++ ++ AR N + N K ++++ +E Sbjct: 328 GLWLANDAAEVRGMDVIPEAIADARKNAKRHGFTNTKYEAGKAEQWLPKWVKE------- 380 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILSTTHTI 341 +R I VDPPR+G DD + + ++Y+SCNP SL RD++ L ++ + Sbjct: 381 -----GWRPDVIVVDPPRTGCDDKLLETILKVQPKRVVYVSCNPSSLARDVNALMKSYEV 435 Query: 342 ERLALFDQFPYTRHMECGVLLVRK 365 E + D FP+T H+E V LV+K Sbjct: 436 EYVQPVDMFPHTAHVENVVRLVKK 459 >gi|70726057|ref|YP_252971.1| hypothetical protein SH1056 [Staphylococcus haemolyticus JCSC1435] gi|68446781|dbj|BAE04365.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435] Length = 454 Score = 294 bits (754), Expect = 1e-77, Method: Composition-based stats. Identities = 77/388 (19%), Positives = 143/388 (36%), Gaps = 40/388 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56 L Y+ QLA K ++ + + N I P HYR +++ I D D Sbjct: 82 GCQLQHMTYDAQLAMKQSQVTNLFHRKAQFSNTIINKTIGMDHPWHYRNKSQLPIGKDRD 141 Query: 57 -DLYHIMFDQQTKERMRIDYFMPGS-----------LLINALMIEMMATIRLEPLLRAKL 104 + Q++ + + +D + I I + + LLR + Sbjct: 142 GKAIIGYYRQRSHDIIDMDSCLIQDDVHQDIMNHVKQWIIDYDISVYNESTKKGLLRHLV 201 Query: 105 FQIDYLTSQSDQAIVTLIYH----RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKI 160 + Y + VT + +L + +E + + ++ Sbjct: 202 IRTGYYSDDKMVVFVTNGKNFQQASILVEKLKETFPNITSIKQNINKSHSNVIMGEQSVT 261 Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCG 219 +D + ++L+ ++ + SF Q N+ + + + A + +L+ YCG Sbjct: 262 LYGKDKIADQLS----DTTFKISDQSFYQINSSQTEKLYQQAIEYAQLTGEETVLDTYCG 317 Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279 G L +A V VE+ +++ A+ N N N V ++E ++ Sbjct: 318 IGTIGLYMAPVAKHVYGVEVVPSAIKDAQQNATLNGFENTTFVCGKAEEVIIKWKQ---- 373 Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILST 337 + + VDPPR G D+ + + I+YISCNP + RD IL + Sbjct: 374 --------QGIKPDVVMVDPPRKGCDETFLQTLLKLNPKRIVYISCNPSTQQRDAQILDS 425 Query: 338 THTIERLALFDQFPYTRHMECGVLLVRK 365 + ++ + D FP T H+E L RK Sbjct: 426 QYELQEITPVDMFPQTTHVETVALFERK 453 >gi|228995800|ref|ZP_04155460.1| Uncharacterized RNA methyltransferase [Bacillus mycoides Rock3-17] gi|229003420|ref|ZP_04161240.1| Uncharacterized RNA methyltransferase [Bacillus mycoides Rock1-4] gi|228757798|gb|EEM07023.1| Uncharacterized RNA methyltransferase [Bacillus mycoides Rock1-4] gi|228763961|gb|EEM12848.1| Uncharacterized RNA methyltransferase [Bacillus mycoides Rock3-17] Length = 461 Score = 294 bits (753), Expect = 1e-77, Method: Composition-based stats. Identities = 81/386 (20%), Positives = 160/386 (41%), Gaps = 32/386 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ------IFRSEPIHYRMRAEFHIWHDG 55 L Y++QL +K D + Q + +++ + P HYR +++ + Sbjct: 88 GCQLQHLDYKEQLNQKRDIVVQAFEKYMNGSMEADIRPTLGMGNPWHYRNKSQLQVGRKD 147 Query: 56 DDLYHIMFDQQTKERMRIDYFMP-------GSLLINALMIEMMATIRLEPLLRAKLFQID 108 + + ++ Q + + + I + M + ++ ++ ++ +I E + + I Sbjct: 148 EKVITGLYKQNSHQLIDISHCMIQHKATNEATKVVRRILEKLNISIYNEKKQKGLVRTIV 207 Query: 109 YLTS-QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY- 166 + Q+ + VTLI + + ++ + K +Q + + I D+ + Sbjct: 208 TRAAVQTGEVQVTLITTKEELPNKEQFIAEVQKQMPTVKSIMQNVNWRKTSVIFGDKTFN 267 Query: 167 --VDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGNGNF 223 E + L + +F Q N V + E AA + +++ YCG G Sbjct: 268 LAGKEVIQETLGDLSFELSARAFFQLNPEQTVVLYNEAKKAAALTGKEKIVDAYCGVGTI 327 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 L LA V +++ ++E A+ N + N K ++++ +E Sbjct: 328 GLWLANDAAEVRGMDVIPEAIEDAKKNAKRHGFTNTKYEAGKAEQWLPKWVKE------- 380 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILSTTHTI 341 +R I VDPPR+G DD + + ++Y+SCNP SL RD+ L ++ + Sbjct: 381 -----GWRPDVIVVDPPRTGCDDKLLETILKVQPKQVVYVSCNPSSLARDVKALMKSYEV 435 Query: 342 ERLALFDQFPYTRHMECGVLLVRKPS 367 E + D FP+T H+E V LVRK + Sbjct: 436 EYVQPVDMFPHTAHVENVVRLVRKEN 461 >gi|325836777|ref|ZP_08166244.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Turicibacter sp. HGF1] gi|325491155|gb|EGC93444.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Turicibacter sp. HGF1] Length = 459 Score = 294 bits (753), Expect = 1e-77, Method: Composition-based stats. Identities = 79/390 (20%), Positives = 137/390 (35%), Gaps = 42/390 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFHIWHDGD 56 + Y QL K D + I EP YR + + Sbjct: 86 GCQVQHLNYPGQLQMKYDTVVNQFKRIGHIEDANILPTIGMEEPWRYRNKTQVPFGLANG 145 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMM-----------ATIRLEPLLRAKLF 105 D+ + +++ E + + + + + + + ++ EM +LR + Sbjct: 146 DVVAGFYQKRSHEIIDMRHCLIQTEISDEIIHEMRGICRDLKLSPYNEESNTGILRHVIV 205 Query: 106 QIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161 + + T + +VT +I + E +++ + KT I Sbjct: 206 RTGFKTDEIMVILVTRKEKIINMDRIVSRLLEKFPQIKVIAQNINPNVTNAILGEKTNII 265 Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCG 219 Y+ + + + + SF Q N + + G+ G+ + + YCG Sbjct: 266 YGEGYIYDEM----NGIGFAISPRSFYQVNPVQTETLYSKAVE-FAGLTGEEIVFDAYCG 320 Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279 G +L LA+H +V VEI ++ A N N N + S+E A Sbjct: 321 IGTITLFLAQHAKKVYGVEIIPEAIADANMNAKLNGFENTEFAVGKSEEVIPAWIE---- 376 Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-S 336 I VDPPR G D + + A I+Y+SC+ +L RD+ IL Sbjct: 377 --------QGIVPDVIVVDPPRKGCDKTLLDTMLEAAPKRIVYVSCDSSTLARDIKILVD 428 Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVRKP 366 + +E D FP T H+E LL RK Sbjct: 429 GGYQLEVAQPVDMFPQTSHVEVVALLTRKN 458 >gi|228925576|ref|ZP_04088665.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228834054|gb|EEM79602.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 465 Score = 294 bits (753), Expect = 1e-77, Method: Composition-based stats. Identities = 79/386 (20%), Positives = 149/386 (38%), Gaps = 40/386 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56 L YE QL K ++R +M + + P YR +A+ I Sbjct: 94 GCQLQHLTYEGQLQAKEKQVRDVMQRIGGLGDVPVHPVLGMKNPWVYRNKAQVPIGEREG 153 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEM-----------MATIRLEPLLRAKLF 105 L + Q T + + ++ + + + L+ E+ R + LR + Sbjct: 154 GLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGISAYNEERNKGTLRHVMA 213 Query: 106 QIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161 + +T + +T L + + + ++ + + + +KT + Sbjct: 214 RYGQVTGEIMLVFITRTAELPNKKAIIEEIAAKFPEVKSIVQNVNPKRTNVIFGDKTTVL 273 Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220 +Y+ + + + + SF Q N + + L A +++ YCG Sbjct: 274 YGSEYIYDFIG----DIKFAISARSFYQVNPEQTKVLYDKTLEYAKLDGNETVIDAYCGI 329 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G+ SL LA+ +V VEI ++E A+ N A N++ N + ++ +E Sbjct: 330 GSISLFLAQKAKKVYGVEIVPEAIEDAKRNAALNNMTNAEFGVGEAEVVIPKWYKE---- 385 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST- 337 T+ VDPPR G D+A + + ++Y+SCNP +L RDL +L Sbjct: 386 --------GVIADTMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLARDLKVLEEG 437 Query: 338 THTIERLALFDQFPYTRHMECGVLLV 363 + + + D FP+T H+EC L Sbjct: 438 GYKTQEVQPVDMFPHTTHVECVAWLK 463 >gi|196034748|ref|ZP_03102156.1| RNA methyltransferase, TrmA family [Bacillus cereus W] gi|218901523|ref|YP_002449357.1| RNA methyltransferase, TrmA family [Bacillus cereus AH820] gi|228944128|ref|ZP_04106507.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|195992791|gb|EDX56751.1| RNA methyltransferase, TrmA family [Bacillus cereus W] gi|218536367|gb|ACK88765.1| RNA methyltransferase, TrmA family [Bacillus cereus AH820] gi|228815517|gb|EEM61759.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 458 Score = 294 bits (753), Expect = 1e-77, Method: Composition-based stats. Identities = 79/386 (20%), Positives = 149/386 (38%), Gaps = 40/386 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56 L YE QL K ++R +M + + P YR +A+ I Sbjct: 87 GCQLQHLTYEGQLQAKEKQVRDVMQRIGGLGDVPVHPVLGMKNPWVYRNKAQVPIGEREG 146 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEM-----------MATIRLEPLLRAKLF 105 L + Q T + + ++ + + + L+ E+ R + LR + Sbjct: 147 GLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGISAYNEERNKGTLRHVMA 206 Query: 106 QIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161 + +T + +T L + + + ++ + + + +KT + Sbjct: 207 RYGQVTGEIMLVFITRTAELPNKKAIIEEIAAKFPEVKSIVQNVNPKRTNVIFGDKTTVL 266 Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220 +Y+ + + + + SF Q N + + L A +++ YCG Sbjct: 267 YGSEYIYDFIG----DIKFAISARSFYQVNPEQTKVLYDKTLEYAKLDGNETVIDAYCGI 322 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G+ SL LA+ +V VEI ++E A+ N A N++ N + ++ +E Sbjct: 323 GSISLFLAQKAKKVYGVEIVPEAIEDAKRNAALNNMTNAEFGVGEAEVVIPKWYKE---- 378 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST- 337 T+ VDPPR G D+A + + ++Y+SCNP +L RDL +L Sbjct: 379 --------GVIADTMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLARDLKVLEEG 430 Query: 338 THTIERLALFDQFPYTRHMECGVLLV 363 + + + D FP+T H+EC L Sbjct: 431 GYKTQEVQPVDMFPHTTHVECVAWLK 456 >gi|301052142|ref|YP_003790353.1| TrmA family RNA methyltransferase [Bacillus anthracis CI] gi|300374311|gb|ADK03215.1| RNA methyltransferase, TrmA family [Bacillus cereus biovar anthracis str. CI] Length = 459 Score = 294 bits (753), Expect = 1e-77, Method: Composition-based stats. Identities = 83/384 (21%), Positives = 158/384 (41%), Gaps = 32/384 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ------IFRSEPIHYRMRAEFHIWHDG 55 L Y++QL +K D + Q + +++ + P HYR +++ + Sbjct: 88 GCQLQHLDYKEQLNQKRDIVVQAFEKYMKNSMEEKIRPTLGMENPWHYRNKSQLQVGRKD 147 Query: 56 DDLYHIMFDQQTKERMRIDYFMP-------GSLLINALMIEMMATIRLEPLLRAKLFQID 108 + + ++ Q + + + I + M + ++ ++ ++ +I E + + I Sbjct: 148 EKVITGLYKQNSHQLIDIAHCMIQHKATNEATKVVRRILEKLNVSIYNEKKQKGLVRTIV 207 Query: 109 YLTS-QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY- 166 T+ Q+ + VTLI + + ++ + A K +Q + + I D+ + Sbjct: 208 TRTAVQTGEVQVTLITTKEELPNKEQFIAEVQKQMPAVKSIMQNVNWRKTSVIFGDKTFK 267 Query: 167 --VDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGNGNF 223 E + L + +F Q N V + E AA +++ YCG G Sbjct: 268 LAGKEVIQETLGDLSFELSARAFFQLNPEQTVVLYNEAKKAAALTGNEKIVDAYCGVGTI 327 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 L LA V +++ ++ AR N + N K ++++ +E Sbjct: 328 GLWLANDAAEVRGMDVIPEAIADARKNAKRHGFTNTKYEAGKAEQWLPKWVKE------- 380 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILSTTHTI 341 +R I VDPPR G DD + + ++Y+SCNP SL RD+ L ++ + Sbjct: 381 -----GWRPDVIVVDPPRIGCDDKLLETILKVKPKQVVYVSCNPSSLARDVQALMKSYEV 435 Query: 342 ERLALFDQFPYTRHMECGVLLVRK 365 E + D FP+T H+E V LVRK Sbjct: 436 EYVQPVDMFPHTAHVENVVKLVRK 459 >gi|229095127|ref|ZP_04226122.1| Uncharacterized RNA methyltransferase [Bacillus cereus Rock3-29] gi|229101229|ref|ZP_04231993.1| Uncharacterized RNA methyltransferase [Bacillus cereus Rock3-28] gi|229114081|ref|ZP_04243506.1| Uncharacterized RNA methyltransferase [Bacillus cereus Rock1-3] gi|228669351|gb|EEL24768.1| Uncharacterized RNA methyltransferase [Bacillus cereus Rock1-3] gi|228682197|gb|EEL36310.1| Uncharacterized RNA methyltransferase [Bacillus cereus Rock3-28] gi|228688312|gb|EEL42195.1| Uncharacterized RNA methyltransferase [Bacillus cereus Rock3-29] Length = 459 Score = 294 bits (753), Expect = 1e-77, Method: Composition-based stats. Identities = 82/384 (21%), Positives = 159/384 (41%), Gaps = 32/384 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ------IFRSEPIHYRMRAEFHIWHDG 55 L Y++QL +K D + Q + L+ + P HYR +++ + Sbjct: 88 GCQLQHLDYKEQLNQKRDIVVQAFEKYMNNTLEEKIRPTLGMENPWHYRNKSQLQVGRKD 147 Query: 56 DDLYHIMFDQQTKERMRIDYFMP-------GSLLINALMIEMMATIRLEPLLRAKLFQID 108 + + ++ Q + + + I + M + ++ ++ ++ +I E + + I Sbjct: 148 EKVITGLYKQNSHQLIDIAHCMIQHKATNEATKVVRRILEKLNVSIYNEKKQKGLVRTIV 207 Query: 109 YLTS-QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY- 166 T+ Q+ + VTLI + + ++ + A K +Q + + I D+ + Sbjct: 208 TRTAVQTGEVQVTLITTKEELPNKEQFIAEVQKQMPAVKSIMQNVNWRKTSVIFGDKTFK 267 Query: 167 --VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELYCGNGNF 223 E + L + +F Q N V + + AA +++ YCG G Sbjct: 268 LAGKEVIQETLGDLSFELSARAFFQLNPEQTVVLYDEAKKAAALTGNEKIVDAYCGVGTI 327 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 L LA V +++ ++ AR N + N K ++++ +E Sbjct: 328 GLWLANDAAEVRGMDVIPEAIADARKNAKRHGFTNTKYEAGKAEQWLPKWVKE------- 380 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILSTTHTI 341 +R I VDPPR+G DD + + ++Y+SCNP SL RD++ L ++ + Sbjct: 381 -----GWRPDVIVVDPPRTGCDDKLLETILKVQPKRVVYVSCNPSSLARDVNALMKSYEV 435 Query: 342 ERLALFDQFPYTRHMECGVLLVRK 365 E + D FP+T H+E V LV+K Sbjct: 436 EYVQPVDMFPHTAHVENVVRLVKK 459 >gi|294791683|ref|ZP_06756831.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Veillonella sp. 6_1_27] gi|294456913|gb|EFG25275.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Veillonella sp. 6_1_27] Length = 496 Score = 294 bits (753), Expect = 1e-77, Method: Composition-based stats. Identities = 77/387 (19%), Positives = 145/387 (37%), Gaps = 42/387 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAF-----QVPNLQIFRSEPIHYRMRAEFHIWHDGD 56 L YE QL+ K +++ ++ + + P YR + + + Sbjct: 123 GCQLQHITYEGQLSLKTQKVKDVIERIAHQNPDLVKPTLGPKNPWAYRNKMQMPVGGTKG 182 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSL---LINALMIEMMATIRLEPL--------LRAKLF 105 D+ + + + ++ S I ++ +EP LR + Sbjct: 183 DIQMGFYAMGSHDIVQGTNCPIQSEGNNSIAQACYQIAKEFDIEPYDEHTGKGVLRHVIG 242 Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD 165 +I S +VT H + W E +L + + + + + +T + L Sbjct: 243 RIGQ--SGWMIILVTATEHLPHQEKWVE---KLIERVPQVETIVHNVN-GKRTNVILGPK 296 Query: 166 ----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGN 220 Y +T + L + +SF Q N + + LA + +++ YCG Sbjct: 297 NSLLYGAGTITDHIKDLRFTLSPHSFFQVNPEQTTVLYDQALAYADLKGTEIVIDAYCGT 356 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G SL LA V+ +EI +P++ AR N N +N + + + Sbjct: 357 GTISLFLAHKAKHVIGIEIVEPAIINARENARRNGYDNTEFIVADAA------------V 404 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILST- 337 + + R I DP R+G + + + I+Y+SCNP ++ RD+ IL+ Sbjct: 405 EMPKLYKAGVRPDVIVFDPIRAGCKEEVLTSAASMEPKRIVYVSCNPATMARDIEILTHY 464 Query: 338 THTIERLALFDQFPYTRHMECGVLLVR 364 + ++ + D FP T H+E LL R Sbjct: 465 GYELKEVQPVDMFPMTAHVEAVALLTR 491 >gi|324324344|gb|ADY19604.1| RNA methyltransferase, TrmA family protein [Bacillus thuringiensis serovar finitimus YBT-020] Length = 459 Score = 294 bits (753), Expect = 1e-77, Method: Composition-based stats. Identities = 78/386 (20%), Positives = 149/386 (38%), Gaps = 40/386 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56 L YE QL K ++R +M + + P YR +A+ I Sbjct: 87 GCQLQHLTYEGQLQAKEKQVRDVMQRIGGLSDVPVHPVLGMKNPWVYRNKAQVPIGEREG 146 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEM-----------MATIRLEPLLRAKLF 105 L + Q T + + ++ + + + L+ ++ R + LR + Sbjct: 147 GLVAGFYRQGTHDIINMESCLIQAEENDTLIQKVKRICEKHGISAYNEERNKGTLRHVMA 206 Query: 106 QIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161 + +T + +T L + + + ++ + + + +KT + Sbjct: 207 RYGQVTGEIMLVFITRTAELPNKKAIIEEIATKFPEVKSIVQNVNPKRTNVIFGDKTTVL 266 Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220 +Y+ + + + + SF Q N + + L A +++ YCG Sbjct: 267 YGSEYIYDFIG----DIKFAISARSFYQVNPEQTKVLYDKTLEYAKLDGNETVIDAYCGI 322 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G+ SL LA+ +V VEI ++E A+ N A N++ N + ++ +E Sbjct: 323 GSISLFLAQKAKKVYGVEIVPEAIEDAKRNAALNNMTNAEFGVGEAEVVIPKWYKE---- 378 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST- 337 T+ VDPPR G D+A + + ++Y+SCNP +L RDL +L Sbjct: 379 --------GVIADTMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLARDLKVLEEG 430 Query: 338 THTIERLALFDQFPYTRHMECGVLLV 363 + + + D FP+T H+EC L Sbjct: 431 GYKTQEVQPVDMFPHTTHVECVAWLS 456 >gi|229089447|ref|ZP_04220718.1| Uncharacterized RNA methyltransferase [Bacillus cereus Rock3-42] gi|228693924|gb|EEL47616.1| Uncharacterized RNA methyltransferase [Bacillus cereus Rock3-42] Length = 465 Score = 294 bits (753), Expect = 1e-77, Method: Composition-based stats. Identities = 79/386 (20%), Positives = 149/386 (38%), Gaps = 40/386 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56 L YE QL K ++R +M + + P YR +A+ I Sbjct: 94 GCQLQHLTYEGQLQAKEKQVRDVMQRIGGLGDVPVHPVLGMKNPWVYRNKAQVPIGEREG 153 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEM-----------MATIRLEPLLRAKLF 105 L + Q T + + ++ + + + L+ E+ R + LR + Sbjct: 154 GLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGISAYNEERNKGTLRHVMA 213 Query: 106 QIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161 + +T + +T L + + + ++ + + + +KT + Sbjct: 214 RYGQVTGEIMLVFITRTAELPNKKAIIEEIAAKFPEVKSIVQNVNPKRTNVIFGDKTTVL 273 Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220 +Y+ + + + + SF Q N + + L A +++ YCG Sbjct: 274 YGSEYIYDFIG----DIKFAISARSFYQVNPEQTKVLYDKTLEYAKLDGNETVIDAYCGI 329 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G+ SL LA+ +V VEI ++E A+ N A N++ N + ++ +E Sbjct: 330 GSISLFLAQKAKKVYGVEIVPEAIEDAKRNAALNNMTNAEFGVGEAEVVIPKWYKE---- 385 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST- 337 T+ VDPPR G D+A + + ++Y+SCNP +L RDL +L Sbjct: 386 --------GVIADTMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLARDLKVLEEG 437 Query: 338 THTIERLALFDQFPYTRHMECGVLLV 363 + + + D FP+T H+EC L Sbjct: 438 GYKTQEVQPVDMFPHTTHVECVAWLK 463 >gi|52144916|ref|YP_081914.1| RNA methyltransferase [Bacillus cereus E33L] gi|51978385|gb|AAU19935.1| RNA methyltransferase protein, trmA family (tRNA (uracil-5-)-methyltransferase) [Bacillus cereus E33L] Length = 458 Score = 294 bits (753), Expect = 1e-77, Method: Composition-based stats. Identities = 79/386 (20%), Positives = 149/386 (38%), Gaps = 40/386 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56 L YE QL K ++R +M + + P YR +A+ I Sbjct: 87 GCQLQHLTYEGQLQAKEKQVRDVMQRIGGLGDVPVHPVLGMKNPWVYRNKAQVPIGEREG 146 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEM-----------MATIRLEPLLRAKLF 105 L + Q T + + ++ + + + L+ E+ R + LR + Sbjct: 147 GLVAGFYRQGTHDIINMETCLIQAEENDTLIQEVKRICEKHGISAYNEERNKGTLRHVMA 206 Query: 106 QIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161 + +T + +T L + + + ++ + + + +KT + Sbjct: 207 RYGQVTGEIMLVFITRTAELPNKKAIIEEIAAKFPEVKSIVQNVNPKRTNVIFGDKTTVL 266 Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220 +Y+ + + + + SF Q N + + L A +++ YCG Sbjct: 267 YGSEYIYDFIG----DIKFAISARSFYQVNPEQTKVLYDKTLEYAKLDGNETVIDAYCGI 322 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G+ SL LA+ +V VEI ++E A+ N A N++ N + ++ +E Sbjct: 323 GSISLFLAQKAKKVYGVEIVPEAIEDAKRNAALNNMTNAEFGVGEAEVVIPKWYKE---- 378 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST- 337 T+ VDPPR G D+A + + ++Y+SCNP +L RDL +L Sbjct: 379 --------GVIADTMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLARDLKVLEEG 430 Query: 338 THTIERLALFDQFPYTRHMECGVLLV 363 + + + D FP+T H+EC L Sbjct: 431 GYKTQEVQPVDMFPHTTHVECVAWLK 456 >gi|49480082|ref|YP_034651.1| RNA methyltransferase [Bacillus thuringiensis serovar konkukian str. 97-27] gi|301052046|ref|YP_003790257.1| TrmA family RNA methyltransferase [Bacillus anthracis CI] gi|49331638|gb|AAT62284.1| RNA methyltransferase protein, trmA family (tRNA (uracil-5-)-methyltransferase, TrmA) [Bacillus thuringiensis serovar konkukian str. 97-27] gi|300374215|gb|ADK03119.1| RNA methyltransferase protein, trmA family [Bacillus cereus biovar anthracis str. CI] Length = 458 Score = 294 bits (753), Expect = 1e-77, Method: Composition-based stats. Identities = 79/386 (20%), Positives = 149/386 (38%), Gaps = 40/386 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56 L YE QL K ++R +M + + P YR +A+ I Sbjct: 87 GCQLQHLTYEGQLQAKEKQVRDVMQRIGGLGDVPVHPVLGMKNPWVYRNKAQVPIGEREG 146 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEM-----------MATIRLEPLLRAKLF 105 L + Q T + + ++ + + + L+ E+ R + LR + Sbjct: 147 GLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGISAYNEERNKGTLRHVMA 206 Query: 106 QIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161 + +T + +T L + + + ++ + + + +KT + Sbjct: 207 RYGQVTGEIMLVFITRTAELPNKKAIIEEIAAKFPEVKSIVQNVNPKRTNVIFGDKTTVL 266 Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220 +Y+ + + + + SF Q N + + L A +++ YCG Sbjct: 267 YGSEYIYDFIG----DIKFAISARSFYQVNPEQTKVLYDKTLEYAKLDGNETVIDAYCGI 322 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G+ SL LA+ +V VEI ++E A+ N A N++ N + ++ +E Sbjct: 323 GSISLFLAQKAKKVYGVEIVPEAIEDAKRNAALNNMTNAEFGVGEAEVVIPKWYKE---- 378 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST- 337 T+ VDPPR G D+A + + ++Y+SCNP +L RDL +L Sbjct: 379 --------GVIADTMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLARDLKVLEEG 430 Query: 338 THTIERLALFDQFPYTRHMECGVLLV 363 + + + D FP+T H+EC L Sbjct: 431 GYKTQEVQPVDMFPHTTHVECVAWLK 456 >gi|324324527|gb|ADY19787.1| RNA methyltransferase [Bacillus thuringiensis serovar finitimus YBT-020] Length = 459 Score = 294 bits (753), Expect = 1e-77, Method: Composition-based stats. Identities = 82/384 (21%), Positives = 159/384 (41%), Gaps = 32/384 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ------IFRSEPIHYRMRAEFHIWHDG 55 L Y++QL +K D + Q + +++ + P HYR +++ + Sbjct: 88 GCQLQHLDYKEQLNQKRDIVVQAFEKYMKNSMEEKIRPTLGMENPWHYRNKSQLQVGRKD 147 Query: 56 DDLYHIMFDQQTKERMRIDYFMP-------GSLLINALMIEMMATIRLEPLLRAKLFQID 108 + + ++ Q + + + I + M + ++ ++ ++ +I E + + I Sbjct: 148 EKVITGLYKQNSHQLIDIAHCMIQHKATNEATKVVRRILEKLNVSIYNEKKQKGLVRTIV 207 Query: 109 YLTS-QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY- 166 T+ Q+ + VTLI + + ++ + A K +Q + + I D+ + Sbjct: 208 TRTAVQTGEVQVTLITTKEELPNKEQFIAEVQKQMPAVKSIMQNVNWRKTSVIFGDKTFK 267 Query: 167 --VDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGNGNF 223 E + L + +F Q N V + E AA +++ YCG G Sbjct: 268 LAGKEVIQETLGDLSFELSARAFFQLNPEQTVVLYNEAKKAAALTGNEKIVDAYCGVGTI 327 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 L LA V +++ ++ AR N + N K ++++ ++ Sbjct: 328 GLWLANDAAEVRGMDVIPEAIADARKNAKRHGFTNTKYEAGKAEQWLPKWVKD------- 380 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILSTTHTI 341 +R I VDPPR+G DD + + ++Y+SCNP SL RD+ L ++ + Sbjct: 381 -----GWRPDVIVVDPPRTGCDDKLLETILKVKPKQVVYVSCNPSSLARDVQALMKSYEV 435 Query: 342 ERLALFDQFPYTRHMECGVLLVRK 365 E + D FP+T H+E V LVRK Sbjct: 436 EYVQPVDMFPHTAHVENVVKLVRK 459 >gi|118476081|ref|YP_893232.1| RNA methyltransferase [Bacillus thuringiensis str. Al Hakam] gi|229182714|ref|ZP_04309955.1| Uncharacterized RNA methyltransferase [Bacillus cereus BGSC 6E1] gi|118415306|gb|ABK83725.1| 23S rRNA m(5)U-1939 methyltransferase [Bacillus thuringiensis str. Al Hakam] gi|228600799|gb|EEK58378.1| Uncharacterized RNA methyltransferase [Bacillus cereus BGSC 6E1] Length = 465 Score = 294 bits (753), Expect = 2e-77, Method: Composition-based stats. Identities = 79/386 (20%), Positives = 149/386 (38%), Gaps = 40/386 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56 L YE QL K ++R +M + + P YR +A+ I Sbjct: 94 GCQLQHLTYEGQLQAKEKQVRDVMQRIGGLGDVPVHPVLGMKNPWIYRNKAQVPIGEREG 153 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEM-----------MATIRLEPLLRAKLF 105 L + Q T + + ++ + + + L+ E+ R + LR + Sbjct: 154 GLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGISAYNEERNKGTLRHVMA 213 Query: 106 QIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161 + +T + +T L + + + ++ + + + +KT + Sbjct: 214 RYGQVTGEIMLVFITRTAELPNKKAIIEEIAAKFPEVKSIVQNVNPKRTNVIFGDKTTVL 273 Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220 +Y+ + + + + SF Q N + + L A +++ YCG Sbjct: 274 YGSEYIYDFIG----DIKFAISARSFYQVNPEQTKVLYDKTLEYAKLDGNETVIDAYCGI 329 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G+ SL LA+ +V VEI ++E A+ N A N++ N + ++ +E Sbjct: 330 GSISLFLAQKAKKVYGVEIVPEAIEDAKRNAALNNMTNAEFGVGEAEVVIPKWYKE---- 385 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST- 337 T+ VDPPR G D+A + + ++Y+SCNP +L RDL +L Sbjct: 386 --------GVIADTMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLARDLKVLEEG 437 Query: 338 THTIERLALFDQFPYTRHMECGVLLV 363 + + + D FP+T H+EC L Sbjct: 438 GYKTQEVQPVDMFPHTTHVECVAWLK 463 >gi|196045238|ref|ZP_03112470.1| RNA methyltransferase, TrmA family [Bacillus cereus 03BB108] gi|225862370|ref|YP_002747748.1| RNA methyltransferase, TrmA family [Bacillus cereus 03BB102] gi|196023822|gb|EDX62497.1| RNA methyltransferase, TrmA family [Bacillus cereus 03BB108] gi|225789520|gb|ACO29737.1| RNA methyltransferase, TrmA family [Bacillus cereus 03BB102] Length = 458 Score = 294 bits (753), Expect = 2e-77, Method: Composition-based stats. Identities = 79/386 (20%), Positives = 149/386 (38%), Gaps = 40/386 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56 L YE QL K ++R +M + + P YR +A+ I Sbjct: 87 GCQLQHLTYEGQLQAKEKQVRDVMQRIGGLGDVPVHPVLGMKNPWIYRNKAQVPIGEREG 146 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEM-----------MATIRLEPLLRAKLF 105 L + Q T + + ++ + + + L+ E+ R + LR + Sbjct: 147 GLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGISAYNEERNKGTLRHVMA 206 Query: 106 QIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161 + +T + +T L + + + ++ + + + +KT + Sbjct: 207 RYGQVTGEIMLVFITRTAELPNKKAIIEEIAAKFPEVKSIVQNVNPKRTNVIFGDKTTVL 266 Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220 +Y+ + + + + SF Q N + + L A +++ YCG Sbjct: 267 YGSEYIYDFIG----DIKFAISARSFYQVNPEQTKVLYDKTLEYAKLDGNETVIDAYCGI 322 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G+ SL LA+ +V VEI ++E A+ N A N++ N + ++ +E Sbjct: 323 GSISLFLAQKAKKVYGVEIVPEAIEDAKRNAALNNMTNAEFGVGEAEVVIPKWYKE---- 378 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST- 337 T+ VDPPR G D+A + + ++Y+SCNP +L RDL +L Sbjct: 379 --------GVIADTMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLARDLKVLEEG 430 Query: 338 THTIERLALFDQFPYTRHMECGVLLV 363 + + + D FP+T H+EC L Sbjct: 431 GYKTQEVQPVDMFPHTTHVECVAWLK 456 >gi|225574104|ref|ZP_03782715.1| hypothetical protein RUMHYD_02169 [Blautia hydrogenotrophica DSM 10507] gi|225038655|gb|EEG48901.1| hypothetical protein RUMHYD_02169 [Blautia hydrogenotrophica DSM 10507] Length = 455 Score = 294 bits (752), Expect = 2e-77, Method: Composition-based stats. Identities = 86/389 (22%), Positives = 147/389 (37%), Gaps = 40/389 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDG- 55 L YE+QL K +R++ + I EP +YR +A+F + + Sbjct: 82 GCQLQALSYEKQLEYKQNRVKSHLERIGGFSDIPMEPIIGMEEPYYYRNKAQFPVGRNKE 141 Query: 56 DDLYHIMFDQQTKERM---RIDYFMPGSLLINALMIEMMATIRLEP--------LLRAKL 104 + + +T + R + G+ I +I+ M ++EP L+R L Sbjct: 142 GRIVTGFYAGRTHSIVETRRCYLGVLGNEEILNRVIDWMEENQVEPYDEKSGSGLVRHIL 201 Query: 105 FQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRD---ALHARKYQIQLIGRANKTKIC 161 + + + + +V + I + + + K Sbjct: 202 IRYGFSSGEWMVCLVINGDKLPAKERLIRTLIEINGMTSITANVNTRRDNVILGEKILPV 261 Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGN 220 + Y+ +++ + Y SF Q N + E L K ++ +LYCG Sbjct: 262 WGQTYITDQIG----EVSYEISPLSFYQVNPLQTRKLYEKALEYAKLQGNEVVWDLYCGI 317 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G SL LA+ +V VEI +V A+ N N + NV+ ++E R+ Sbjct: 318 GTISLFLAQKAKKVYGVEIVPDAVRDAKRNAKINGMKNVEFFVGKAEEILPKKRKS---- 373 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILS-- 336 I VDPPR G D A + + ++Y+SC+ +L RDL L Sbjct: 374 -------EGVYADVIVVDPPRKGCDRALLDTILEMGPRRVVYVSCDSATLARDLKYLCGD 426 Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVRK 365 + +E++ DQF T H+E LL RK Sbjct: 427 GGYRLEKVCPVDQFGMTVHVETICLLERK 455 >gi|289806801|ref|ZP_06537430.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 244 Score = 294 bits (752), Expect = 2e-77, Method: Composition-based stats. Identities = 155/239 (64%), Positives = 184/239 (76%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 L +QYE QLAEKV RL+ MM F ++FRS HYRMRAEF +WHDGD+LYHIMFD Sbjct: 6 LPTEQYEAQLAEKVARLQSMMAPFSGLVPEVFRSPVSHYRMRAEFRLWHDGDNLYHIMFD 65 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 QQTK R+R+D F S LIN LM M+A +R LR KLFQIDYLT+ S+QA+V+L+YH Sbjct: 66 QQTKSRIRVDTFPAASQLINTLMKAMIAGVRDNHALRHKLFQIDYLTTLSNQAVVSLLYH 125 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + LD+ WRE A LRDAL A+ + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E Sbjct: 126 KKLDEEWREAATALRDALRAQGLNVHLIGRATKTKIELDQDYIDERLPVAGKEIIYRQVE 185 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 NSFTQPNA +N+ MLEW L TK +GDLLELYCGNGNFSL LAR+F+RVLA EIAKPS Sbjct: 186 NSFTQPNAAMNIQMLEWALEVTKDSKGDLLELYCGNGNFSLALARNFNRVLATEIAKPS 244 >gi|229055159|ref|ZP_04195586.1| Uncharacterized RNA methyltransferase [Bacillus cereus AH603] gi|228721151|gb|EEL72681.1| Uncharacterized RNA methyltransferase [Bacillus cereus AH603] Length = 465 Score = 294 bits (752), Expect = 2e-77, Method: Composition-based stats. Identities = 79/386 (20%), Positives = 146/386 (37%), Gaps = 40/386 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56 L YE QL K ++R +M + + P YR +A+ I Sbjct: 94 GCQLQHLTYEGQLKAKEKQVRDVMQRIGGLSDVPVHPVLGMKNPWVYRNKAQVPIGEREG 153 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-----------LRAKLF 105 L + Q T + + ++ + + + L+ E+ + LR + Sbjct: 154 GLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKNGISAYNEERNKGTLRHVMA 213 Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDAWRECAIR----LRDALHARKYQIQLIGRANKTKIC 161 + +T + +T +A E ++ + + + +KT + Sbjct: 214 RYGQVTGEIMLVFITRTAELPNKEAIIEEIAAKFPEVKSIVQNVNTKRTNVIFGDKTTVL 273 Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220 +Y+ + + + + SF Q N + + L A +++ YCG Sbjct: 274 YGSEYIYDFIG----DIKFAISARSFYQVNPEQTKVLYDKTLEYAKLNGNETVIDAYCGI 329 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G+ SL LA+ +V VEI ++E A N A N++ N + ++ +E Sbjct: 330 GSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFGVGEAEVVIPKWYKE---- 385 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST- 337 T+ VDPPR G D+A + + ++Y+SCNP +L RDL +L Sbjct: 386 --------GVIADTMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLARDLKVLEEG 437 Query: 338 THTIERLALFDQFPYTRHMECGVLLV 363 + + + D FP+T H+EC L Sbjct: 438 GYKTQEVQPVDMFPHTTHVECVAWLK 463 >gi|229916717|ref|YP_002885363.1| RNA methyltransferase, TrmA family [Exiguobacterium sp. AT1b] gi|229468146|gb|ACQ69918.1| RNA methyltransferase, TrmA family [Exiguobacterium sp. AT1b] Length = 454 Score = 294 bits (752), Expect = 2e-77, Method: Composition-based stats. Identities = 77/386 (19%), Positives = 144/386 (37%), Gaps = 39/386 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ----VPNLQIFRSEPIHYRMRAEFHIWHDGDD 57 L YE QL +K +R+ + + I EP YR +A+ +GD Sbjct: 82 GCQLQHFSYEGQLRQKRERVVDALKRLGQFDVPVHDTIGMPEPWRYRNKAQVPFKQEGDR 141 Query: 58 LYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLFQ 106 L + ++ + + + + +++A + ++R + + Sbjct: 142 LVSGFYRPRSHDIVEMSECLIQDERNDKAIQVVRDVLDARGVPAYDEKTGRGVIRHVMAR 201 Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD- 165 Y S + ++ LI E + + L +Q + +KT + L Sbjct: 202 YGY---HSGELMIVLITKTTKLKGVNEIVADIVERLPDVTSIMQNVNP-DKTNVILGATN 257 Query: 166 ---YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNG 221 Y E + L + +SF Q N + L A +++ YCG G Sbjct: 258 KLLYGHETIEDKIAGLTFTISPHSFFQVNPVQTEKLYGKALEYAQLSGTEQVVDAYCGIG 317 Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281 SL LAR V VE+ ++E A+ N N ++NV ++++ +++ Sbjct: 318 TISLFLARKAAHVYGVEVVPEAIEDAKQNALVNEIDNVTYACGAAEDVLPQWKKD----- 372 Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILS-TT 338 I VDPPR G ++ + + I+Y+SCN + RD+ L+ Sbjct: 373 -------GVNPDVIVVDPPRKGCAESFLETMVEMGPKRIVYVSCNVATQARDMRYLADHG 425 Query: 339 HTIERLALFDQFPYTRHMECGVLLVR 364 + + + D FP+T H+E L + Sbjct: 426 YRLMEVTPVDMFPHTAHVETVAWLEK 451 >gi|196040233|ref|ZP_03107535.1| RNA methyltransferase, TrmA family [Bacillus cereus NVH0597-99] gi|196029088|gb|EDX67693.1| RNA methyltransferase, TrmA family [Bacillus cereus NVH0597-99] Length = 458 Score = 294 bits (752), Expect = 2e-77, Method: Composition-based stats. Identities = 79/386 (20%), Positives = 149/386 (38%), Gaps = 40/386 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56 L YE QL K ++R +M + + P YR +A+ I Sbjct: 87 GCQLQHLTYEGQLQAKEKQVRDVMQRIGGLGDVPVHPVLGMKNPWVYRNKAQVPIGEREG 146 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEM-----------MATIRLEPLLRAKLF 105 L + Q T + + ++ + + + L+ E+ R + LR + Sbjct: 147 GLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGILAYNEERNKGTLRHVMA 206 Query: 106 QIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161 + +T + +T L + + + ++ + + + +KT + Sbjct: 207 RYGQVTGEIMLVFITRTAELPNKKAIIEEIAAKFPEVKSIVQNVNPKRTNVIFGDKTTVL 266 Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220 +Y+ + + + + SF Q N + + L A +++ YCG Sbjct: 267 YGSEYIYDFIG----DIKFAISARSFYQVNPEQTKVLYDKTLEYAKLDGNETVIDAYCGI 322 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G+ SL LA+ +V VEI ++E A+ N A N++ N + ++ +E Sbjct: 323 GSISLFLAQKAKKVYGVEIVPEAIEDAKRNAALNNMTNAEFGVGEAEVVIPKWYKE---- 378 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST- 337 T+ VDPPR G D+A + + ++Y+SCNP +L RDL +L Sbjct: 379 --------GVIADTMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLARDLKVLEEG 430 Query: 338 THTIERLALFDQFPYTRHMECGVLLV 363 + + + D FP+T H+EC L Sbjct: 431 GYKTQEVQPVDMFPHTTHVECVAWLK 456 >gi|228950875|ref|ZP_04112998.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228808804|gb|EEM55300.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 454 Score = 294 bits (752), Expect = 2e-77, Method: Composition-based stats. Identities = 79/386 (20%), Positives = 148/386 (38%), Gaps = 40/386 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56 L YE QL K ++R +M + + P YR +A+ I Sbjct: 83 GCQLQHLTYEGQLQAKEKQVRDVMQRIGGLGDVPVHPVLGMKNPWVYRNKAQVPIGEREG 142 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEM-----------MATIRLEPLLRAKLF 105 L + Q T + + ++ + + + L+ E+ R + LR + Sbjct: 143 GLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGITAYNEERNKGTLRHVMA 202 Query: 106 QIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161 + +T + +T L + + + ++ + + + +KT + Sbjct: 203 RYGQVTGEIMLVFITRTAELPNKKAIIEEIAAKFPEVKSIVQNVNTKRTNVIFGDKTTVL 262 Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220 +Y+ + + + + SF Q N + + L A +++ YCG Sbjct: 263 YGSEYIYDFIG----DIKFAISARSFYQVNPEQTKVLYDKTLEYAKLSGNETVIDAYCGI 318 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G+ SL LA+ +V VEI ++E A N A N++ N + ++ +E Sbjct: 319 GSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFGVGEAEVVIPKWYKE---- 374 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST- 337 T+ VDPPR G D+A + + ++Y+SCNP +L RDL +L Sbjct: 375 --------GVIADTMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLARDLKVLEEG 426 Query: 338 THTIERLALFDQFPYTRHMECGVLLV 363 + + + D FP+T H+EC L Sbjct: 427 GYKTQEVQPVDMFPHTTHVECVAWLK 452 >gi|30018572|ref|NP_830203.1| tRNA (Uracil-5-) -methyltransferase [Bacillus cereus ATCC 14579] gi|296501148|ref|YP_003662848.1| tRNA (Uracil-5-)-methyltransferase [Bacillus thuringiensis BMB171] gi|50401538|sp|Q814A6|Y364_BACCR RecName: Full=Uncharacterized RNA methyltransferase BC_0364 gi|29894113|gb|AAP07404.1| tRNA (Uracil-5-) -methyltransferase [Bacillus cereus ATCC 14579] gi|296322200|gb|ADH05128.1| tRNA (Uracil-5-)-methyltransferase [Bacillus thuringiensis BMB171] Length = 458 Score = 293 bits (751), Expect = 2e-77, Method: Composition-based stats. Identities = 79/386 (20%), Positives = 148/386 (38%), Gaps = 40/386 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56 L YE QL K ++R +M + + P YR +A+ I Sbjct: 87 GCQLQHLTYEGQLQAKEKQVRDVMQRIGGLADVPVHPVLGMKNPWVYRNKAQVPIGEREG 146 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEM-----------MATIRLEPLLRAKLF 105 L + Q T + + ++ + + + L+ E+ R + LR + Sbjct: 147 GLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGITAYNEERNKGTLRHVMA 206 Query: 106 QIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161 + +T + +T L + + + ++ + + + +KT + Sbjct: 207 RYGQVTGEIMLVFITRTAELPNKKAIIEEIAAKFPEVKSIVQNVNTKRTNVIFGDKTTVL 266 Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220 +Y+ + + + + SF Q N + + L A +++ YCG Sbjct: 267 YGSEYIYDFIG----DIKFAISARSFYQVNPEQTKVLYDKTLEYAKLNGNETVIDAYCGI 322 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G+ SL LA+ +V VEI ++E A N A N++ N + ++ +E Sbjct: 323 GSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFGVGEAEVVIPKWYKE---- 378 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILST- 337 T+ VDPPR G D+A + + ++Y+SCNP +L RDL +L Sbjct: 379 --------GVIADTMVVDPPRKGCDEALLNTIIDMKPNRVVYVSCNPATLARDLKVLEEG 430 Query: 338 THTIERLALFDQFPYTRHMECGVLLV 363 + + + D FP+T H+EC L Sbjct: 431 GYKTQEVQPVDMFPHTTHVECVAWLK 456 >gi|228906093|ref|ZP_04069982.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis IBL 200] gi|229042217|ref|ZP_04189971.1| Uncharacterized RNA methyltransferase [Bacillus cereus AH676] gi|228727152|gb|EEL78355.1| Uncharacterized RNA methyltransferase [Bacillus cereus AH676] gi|228853502|gb|EEM98270.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis IBL 200] Length = 454 Score = 293 bits (751), Expect = 2e-77, Method: Composition-based stats. Identities = 79/386 (20%), Positives = 148/386 (38%), Gaps = 40/386 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56 L YE QL K ++R +M + + P YR +A+ I Sbjct: 83 GCQLQHLTYEGQLQAKEKQVRDVMQRIGGLGDVPVHPVLGMKNPWVYRNKAQVPIGEREG 142 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEM-----------MATIRLEPLLRAKLF 105 L + Q T + + ++ + + + L+ E+ R + LR + Sbjct: 143 GLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGITAYNEERNKGTLRHVMA 202 Query: 106 QIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161 + +T + +T L + + + ++ + + + +KT + Sbjct: 203 RYGQVTGEIMLVFITRTAELPNKKAIIEEIAAKFPEVKSIVQNVNTKRTNVIFGDKTTVL 262 Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220 +Y+ + + + + SF Q N + + L A +++ YCG Sbjct: 263 YGSEYIYDFIG----DIKFAISARSFYQVNPEQTKVLYDKTLEYAKLNGNETVIDAYCGI 318 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G+ SL LA+ +V VEI ++E A N A N++ N + ++ +E Sbjct: 319 GSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFGVGEAEVVIPKWYKE---- 374 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILST- 337 T+ VDPPR G D+A + + ++Y+SCNP +L RDL +L Sbjct: 375 --------GVIADTMVVDPPRKGCDEALLNTIIDMKPNRVVYVSCNPATLARDLKVLEEG 426 Query: 338 THTIERLALFDQFPYTRHMECGVLLV 363 + + + D FP+T H+EC L Sbjct: 427 GYKTQEVQPVDMFPHTTHVECVAWLK 452 >gi|229165298|ref|ZP_04293085.1| Uncharacterized RNA methyltransferase [Bacillus cereus AH621] gi|228618123|gb|EEK75161.1| Uncharacterized RNA methyltransferase [Bacillus cereus AH621] Length = 459 Score = 293 bits (751), Expect = 2e-77, Method: Composition-based stats. Identities = 80/386 (20%), Positives = 147/386 (38%), Gaps = 40/386 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56 L YE QL K ++R +M + + P YR +A+ I Sbjct: 87 GCQLQHLTYEGQLKAKEKQVRDVMQRIGGLSDVPVHPVLGMKNPWVYRNKAQVPIGEREG 146 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEM-----------MATIRLEPLLRAKLF 105 L + Q T + + ++ + + + L+ E+ R + LR + Sbjct: 147 GLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGISAYNEERNKGTLRHVMA 206 Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDAWRECAIR----LRDALHARKYQIQLIGRANKTKIC 161 + +T + +T +A E ++ + + + +KT + Sbjct: 207 RYGQVTGEIMLVFITRTAELPNKEAIIEEIAAKFPEVKSIVQNVNTKRTNVIFGDKTTVL 266 Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220 +Y+ + + + + SF Q N + + L A +++ YCG Sbjct: 267 YGSEYIYDFIG----DIKFAISARSFYQVNPEQTKVLYDKTLEYAKLNGNETVIDAYCGI 322 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G+ SL LA+ +V VEI ++E A N A N++ N + ++ +E Sbjct: 323 GSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFGVGEAEVVIPKWYKE---- 378 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST- 337 T+ VDPPR G D+A + + ++Y+SCNP +L RDL +L Sbjct: 379 --------GVIADTMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLARDLKVLEEG 430 Query: 338 THTIERLALFDQFPYTRHMECGVLLV 363 + + + D FP+T H+EC L Sbjct: 431 GYKTQEVQPVDMFPHTTHVECVAWLS 456 >gi|300118952|ref|ZP_07056663.1| RNA methyltransferase, TrmA family protein [Bacillus cereus SJ1] gi|298723568|gb|EFI64299.1| RNA methyltransferase, TrmA family protein [Bacillus cereus SJ1] Length = 458 Score = 293 bits (751), Expect = 2e-77, Method: Composition-based stats. Identities = 79/386 (20%), Positives = 148/386 (38%), Gaps = 40/386 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56 L YE QL K ++R +M + + P YR +A+ I Sbjct: 87 GCQLQHLTYEGQLQAKEKQVRDVMQRIGGLGDVPVHPVLGMKNPWVYRNKAQVPIGEREG 146 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEM-----------MATIRLEPLLRAKLF 105 L + Q T + + ++ + + + L+ E+ R + LR + Sbjct: 147 GLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGISAYNEERNKGTLRHVMA 206 Query: 106 QIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161 + +T + +T L + + + ++ + + + +KT + Sbjct: 207 RYGQVTGEIMLVFITRTAELPNKKAIIEEIAAKFPEVKSIVQNVNPKRTNVIFGDKTTVL 266 Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220 +Y+ + + + + SF Q N + + L A +++ YCG Sbjct: 267 YGSEYIYDFIG----DIKFAISARSFYQVNPEQTKVLYDKTLEYAKLDGNETVIDAYCGI 322 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G+ SL LA+ +V VEI ++E A+ N A N + N + ++ +E Sbjct: 323 GSISLFLAQKAKKVYGVEIVPEAIEDAKRNAALNDMTNAEFGVGEAEVVIPKWYKE---- 378 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST- 337 T+ VDPPR G D+A + + ++Y+SCNP +L RDL +L Sbjct: 379 --------GVIADTMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLARDLKVLEEG 430 Query: 338 THTIERLALFDQFPYTRHMECGVLLV 363 + + + D FP+T H+EC L Sbjct: 431 GYKTQEVQPVDMFPHTTHVECVAWLK 456 >gi|255102596|ref|ZP_05331573.1| putative RNA methyltransferase [Clostridium difficile QCD-63q42] Length = 454 Score = 293 bits (751), Expect = 2e-77, Method: Composition-based stats. Identities = 84/389 (21%), Positives = 153/389 (39%), Gaps = 41/389 (10%) Query: 2 SGTLLID-QYEQQLAEKVDRLRQMMLAFQVPNL-----QIFRSEPIHYRMRAEFHIWHDG 55 G + D Y +QL K + ++Q++ I P YR +A+F I + Sbjct: 80 GGCQIQDLDYNKQLEMKTNEVKQVLSRIGKLEDVEVHDTIGMDNPYRYRNKAQFPIQKNN 139 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGSLL-----------INALMIEMMATIRLEPLLRAKL 104 + ++T + + + + + I A + + L+R + Sbjct: 140 GIPIIGFYKKKTHDVISTEKCVIQHEINDKIVKIIKTYIRAYKVSIYDEKTHTGLIRHLV 199 Query: 105 FQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR 164 +I + T + +V +E A L++ + K + + + + T L R Sbjct: 200 TKIGFTTKEVMVVLVANGNKLPY---LKELASVLKENIPGFKTLVVNVNQKD-TNAILGR 255 Query: 165 D----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCG 219 + Y D ++ L++ SF Q N + + L A + ++YCG Sbjct: 256 ENIVIYGDGKINDYIGDLVFEISPLSFFQVNPVQTKVLYDKALEYANLNDTDTVFDIYCG 315 Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279 G SL LA+ +V +EI +++ A+ N N+++N + ++E M RE Sbjct: 316 IGTISLFLAQKAKKVYGIEIIDDAIKDAKINAKLNNIHNAEFYVGKAEEIVPKMYRE--- 372 Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILS- 336 + VDPPR G D+ + + I+Y+SCNP +L RDL L+ Sbjct: 373 ---------GKTANVVVVDPPRKGCDEKVLETIVSMNPERIVYVSCNPSTLARDLDYLNV 423 Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVRK 365 D FP++ H+E VLL R+ Sbjct: 424 HGFKCVEAQPVDMFPHSTHVETCVLLQRR 452 >gi|228956753|ref|ZP_04118539.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis serovar pakistani str. T13001] gi|228802941|gb|EEM49773.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis serovar pakistani str. T13001] Length = 455 Score = 293 bits (751), Expect = 2e-77, Method: Composition-based stats. Identities = 79/386 (20%), Positives = 148/386 (38%), Gaps = 40/386 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56 L YE QL K ++R +M + + P YR +A+ I Sbjct: 83 GCQLQHLTYEGQLQAKEKQVRDVMQRIGGLADVPVHPVLGMKNPWVYRNKAQVPIGEREG 142 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEM-----------MATIRLEPLLRAKLF 105 L + Q T + + ++ + + + L+ E+ R + LR + Sbjct: 143 GLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGITAYNEERNKGTLRHVMA 202 Query: 106 QIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161 + +T + +T L + + + ++ + + + +KT + Sbjct: 203 RYGQVTGEIMLVFITRTAELPNKKAIIEEIAAKFPEVKSIVQNVNTKRTNVIFGDKTTVL 262 Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220 +Y+ + + + + SF Q N + + L A +++ YCG Sbjct: 263 YGSEYIYDFIG----DIKFAISARSFYQVNPEQTKVLYDKTLEYAKLNGNETVIDAYCGI 318 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G+ SL LA+ +V VEI ++E A N A N++ N + ++ +E Sbjct: 319 GSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFGVGEAEVVIPKWYKE---- 374 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILST- 337 T+ VDPPR G D+A + + ++Y+SCNP +L RDL +L Sbjct: 375 --------GVIADTMVVDPPRKGCDEALLNTIIDMKPNRVVYVSCNPATLARDLKVLEEG 426 Query: 338 THTIERLALFDQFPYTRHMECGVLLV 363 + + + D FP+T H+EC L Sbjct: 427 GYKTQEVQPVDMFPHTTHVECVAWLS 452 >gi|254977015|ref|ZP_05273487.1| putative RNA methyltransferase [Clostridium difficile QCD-66c26] gi|255651934|ref|ZP_05398836.1| putative RNA methyltransferase [Clostridium difficile QCD-37x79] gi|306521684|ref|ZP_07408031.1| putative RNA methyltransferase [Clostridium difficile QCD-32g58] Length = 544 Score = 293 bits (751), Expect = 2e-77, Method: Composition-based stats. Identities = 83/394 (21%), Positives = 152/394 (38%), Gaps = 41/394 (10%) Query: 2 SGTLLID-QYEQQLAEKVDRLRQMMLAFQVPNL-----QIFRSEPIHYRMRAEFHIWHDG 55 G + D Y +QL K + ++Q++ I P YR +A+F I + Sbjct: 80 GGCQIQDLDYNKQLEMKTNEVKQVLSRIGKLEDVEVHDTIGMDNPYRYRNKAQFPIQKNN 139 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGSLL-----------INALMIEMMATIRLEPLLRAKL 104 + ++T + + + + + I A + + L+R + Sbjct: 140 GIPIIGFYKKKTHDVISTEKCVIQHEINDKIVKIIKTYIRAYKVSIYDEKTHTGLIRHLV 199 Query: 105 FQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR 164 +I + T + +V +E A L++ + K + + + + T L R Sbjct: 200 TKIGFTTKEVMVVLVANGNKLPY---LKELASVLKENIPGFKTLVVNVNQKD-TNAILGR 255 Query: 165 D----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCG 219 + Y D ++ L++ SF Q N + + L A + ++YCG Sbjct: 256 ENIVIYGDGKINDYIGDLVFEISPLSFFQVNPVQTKVLYDKALEYANLNDTDTVFDIYCG 315 Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279 G SL LA+ +V +EI +++ A+ N N+++N + ++E M RE Sbjct: 316 IGTISLFLAQKAKKVYGIEIIDDAIKDAKINAKLNNIHNAEFYVGKAEEIVPKMYRE--- 372 Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILS- 336 + VDPPR G D+ + + I+Y+SCNP +L RDL L+ Sbjct: 373 ---------GKTANVVVVDPPRKGCDEKVLETIVSMNPERIVYVSCNPSTLARDLDYLNV 423 Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVRKPSGWH 370 D FP++ H+E LL + H Sbjct: 424 HGFKCVEAQPVDMFPHSTHVETVALLSKLDVDKH 457 >gi|152974152|ref|YP_001373669.1| RNA methyltransferase [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152022904|gb|ABS20674.1| RNA methyltransferase, TrmA family [Bacillus cytotoxicus NVH 391-98] Length = 458 Score = 293 bits (751), Expect = 2e-77, Method: Composition-based stats. Identities = 78/386 (20%), Positives = 147/386 (38%), Gaps = 40/386 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56 L YE QLA K ++R +M + + P YR +A+ I Sbjct: 87 GCQLQHVTYEGQLAAKQKQVRDVMQRIGGLHDVPVHPVLGMENPWVYRNKAQVPIGEREG 146 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-----------LRAKLF 105 L + Q T + + ++ + + + L+ E+ + LR + Sbjct: 147 GLVAGFYRQGTHDIINMETCLIQAEENDTLIQEVKRICETHGIRAYNEERHKGTLRHVMA 206 Query: 106 QIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161 + ++T + +T L + + + ++ + + + T + Sbjct: 207 RYGHVTGEIMLVFITRTAELPNKKAIIEEITAKFPNVKSIVQNVNTKRTNVIFGETTTVL 266 Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220 +Y+ + + + + SF Q N + + L A +++ YCG Sbjct: 267 YGSEYIYDFIG----DIQFAISARSFYQVNPEQTKVLYDKALEYAQLDGNETVIDAYCGI 322 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G+ SL LA+ +V VEI ++E A+ N N++ N + ++ +E Sbjct: 323 GSISLFLAQKAKKVYGVEIVPEAIEDAKRNAELNNMTNAEFAVGEAEVVIPNWYKE---- 378 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST- 337 TI VDPPR G D+A + + ++Y+SCNP +L RDL +L Sbjct: 379 --------GVIADTIVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLARDLKVLEEG 430 Query: 338 THTIERLALFDQFPYTRHMECGVLLV 363 + + + D FP+T H+EC L Sbjct: 431 GYKTQEVQPVDMFPHTTHVECVAWLK 456 >gi|116873184|ref|YP_849965.1| RNA methyltransferase [Listeria welshimeri serovar 6b str. SLCC5334] gi|116742062|emb|CAK21186.1| RNA methyltransferase, TrmA family [Listeria welshimeri serovar 6b str. SLCC5334] Length = 453 Score = 293 bits (751), Expect = 2e-77, Method: Composition-based stats. Identities = 73/386 (18%), Positives = 146/386 (37%), Gaps = 38/386 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWHDGDD 57 +L Y+ QLA K +++ + M +++ P YR +++ + Sbjct: 84 GCSLQHLSYDGQLAFKRNQVEETMKRIGKLEVEVPKTLGMENPWRYRNKSQVPVGFVNGK 143 Query: 58 LYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLFQ 106 L + +++ + + + + + ++ E + +R + + Sbjct: 144 LTAGFYQKRSHDIIDMSTCLIHNEQGDFAVQKTREILAKYGTEPYNEKTGKGDIRHIMTR 203 Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWREC---AIRLRDALHARKYQIQLIGRANKTKICLD 163 + T Q +VT + + L + + +TK Sbjct: 204 FAHTTGQLMIVLVTNKDRIPFKEEIIRDLTEQLELTSIVQNINSHKTNVIFGERTKTLWG 263 Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELYCGNGN 222 +D +++ + + + SF Q N + L AA + +++ YCG G+ Sbjct: 264 KDIIEDTIH----GIRFAISARSFYQVNPLQTEILYAQALDAAELTGEETVIDAYCGIGS 319 Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282 SL LA+ V VEI +++ AR N A N + N ++E + Sbjct: 320 ISLCLAKKAKHVYGVEIVDQAIQDARANAALNELTNTTFETGKAEEVIPNWYK------- 372 Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILS-TTH 339 + + VDPPR G D+ + + A ++Y+SCNP +L RD+ IL+ + Sbjct: 373 -----NGITADVLVVDPPRKGCDEKLLETILAMKPKKVVYVSCNPGTLARDMKILTDGGY 427 Query: 340 TIERLALFDQFPYTRHMECGVLLVRK 365 +++ D FP T H+E +L K Sbjct: 428 EAKKVQPVDMFPMTTHIEAVTVLNLK 453 >gi|126701016|ref|YP_001089913.1| putative RNA methyltransferase [Clostridium difficile 630] gi|115252453|emb|CAJ70296.1| 23S rRNA (uracil-5-)-methyltransferase RumA (23S rRNA(M-5-U1939)-methyltransferase) [Clostridium difficile] Length = 454 Score = 293 bits (751), Expect = 2e-77, Method: Composition-based stats. Identities = 84/389 (21%), Positives = 153/389 (39%), Gaps = 41/389 (10%) Query: 2 SGTLLID-QYEQQLAEKVDRLRQMMLAFQVPNL-----QIFRSEPIHYRMRAEFHIWHDG 55 G + D Y +QL K + ++Q++ I P YR +A+F I + Sbjct: 80 GGCQIQDLDYNKQLEMKTNEVKQVLSRIGKLEDVEVHDTIGMDNPYRYRNKAQFPIQKNN 139 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGSLL-----------INALMIEMMATIRLEPLLRAKL 104 + ++T + + + + + I A + + L+R + Sbjct: 140 GIPIIGFYKKKTHDVISTEKCVIQHEINDKIVKIIKTYIRAYKVSIYDEKTHTGLIRHLV 199 Query: 105 FQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR 164 +I + T + +V +E A L++ + K + + + + T L R Sbjct: 200 TKIGFTTKEVMVVLVANGNKLPY---LKELASVLKENIPGFKTLVVNVNQKD-TNAILGR 255 Query: 165 D----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCG 219 + Y D ++ L++ SF Q N + + L A + ++YCG Sbjct: 256 ENIVIYGDGKINDYIGDLVFEISPLSFFQVNPVQTKVLYDKALEYANLNDTDTVFDIYCG 315 Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279 G SL LA+ +V +EI +++ A+ N N+++N + ++E M RE Sbjct: 316 IGTISLFLAQKAKKVYGIEIIDDAIKDAKINAKLNNIHNAEFYVGKAEEIVPKMYRE--- 372 Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILS- 336 + VDPPR G D+ + + I+Y+SCNP +L RDL L+ Sbjct: 373 ---------GKTANVVVVDPPRKGCDEKVLETIVSMNPERIVYVSCNPSTLARDLDYLNV 423 Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVRK 365 D FP++ H+E VLL R+ Sbjct: 424 HGFKCVEAQPVDMFPHSTHVETCVLLQRR 452 >gi|16800929|ref|NP_471197.1| hypothetical protein lin1863 [Listeria innocua Clip11262] gi|50401774|sp|Q92AQ7|Y1863_LISIN RecName: Full=Uncharacterized RNA methyltransferase lin1863 gi|16414364|emb|CAC97093.1| lin1863 [Listeria innocua Clip11262] gi|313618389|gb|EFR90415.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria innocua FSL S4-378] Length = 453 Score = 293 bits (751), Expect = 2e-77, Method: Composition-based stats. Identities = 71/386 (18%), Positives = 147/386 (38%), Gaps = 38/386 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWHDGDD 57 +L Y+ QLA K +++ + M N+++ P YR +++ + Sbjct: 84 GCSLQHLSYDGQLAFKRNQVEETMKRIGKLNVEVPDTLGMENPWRYRNKSQVPVGFVNGK 143 Query: 58 LYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLFQ 106 L + +++ + + + + + ++ E + +R + + Sbjct: 144 LTAGFYQKRSHDIIDMSTCLIHNEKGDVAVQKTREILAKYGTEPYDEKTGKGDIRHIMTR 203 Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWREC---AIRLRDALHARKYQIQLIGRANKTKICLD 163 + T Q +VT + + + + Q + ++TK Sbjct: 204 FAHTTGQLMIVLVTTKERLPFKAEIIQDLTNQLEVTSIVQNINPQKTNVIFGDRTKTLWG 263 Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGN 222 D +++ + + + SF Q N + + + A + +++ YCG G+ Sbjct: 264 SDIIEDTIH----GIRFAISARSFYQVNPLQTEVLYQQAIDSAELTGEETVIDAYCGIGS 319 Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282 SL LA+ V VEI +++ AR N N++ N ++E + Sbjct: 320 ISLCLAKKAKHVYGVEIVDQAIQDARANAELNNLTNTTFETGKAEEVIPQWYK------- 372 Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSIL-STTH 339 + + VDPPR G D+ + + A ++Y+SCNP +L RD+ IL + Sbjct: 373 -----NGIVADVLVVDPPRKGCDETLLETILAMKPKKVVYVSCNPGTLARDMKILTEGGY 427 Query: 340 TIERLALFDQFPYTRHMECGVLLVRK 365 +++ D FP T H+E +L K Sbjct: 428 EAKKVQPVDMFPMTTHIEAVTVLTLK 453 >gi|297583072|ref|YP_003698852.1| TrmA family RNA methyltransferase [Bacillus selenitireducens MLS10] gi|297141529|gb|ADH98286.1| RNA methyltransferase, TrmA family [Bacillus selenitireducens MLS10] Length = 441 Score = 293 bits (751), Expect = 2e-77, Method: Composition-based stats. Identities = 77/387 (19%), Positives = 146/387 (37%), Gaps = 38/387 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56 +L YE QL EK ++ +M + ++P YR +++ + + Sbjct: 69 GCSLQHLSYEGQLHEKQKQVMNVMERIGGFTHLTVHPVKGMTDPWRYRNKSQVPVGEEQG 128 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLF 105 + + +++ + ++ + L N I + + +LR + Sbjct: 129 RIIAGFYAERSHSIVDMEACLIQHEDQDRIVNLVKELANQHGIRGYDDQKHKGVLRHVVI 188 Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD 165 + ++ +V L+ + + + +Q I I D+ Sbjct: 189 RRSRISG---DVMVVLVTKEQALPHKEQLIQAITGEVPNVTSIMQNINPKRTNVIFGDKT 245 Query: 166 ---YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNG 221 + +E + + + + SF Q N + E L A +++ YCG G Sbjct: 246 VCLWGEETIKDRIKGIEFVISAKSFYQVNPVQTEVLYEQALNYAALTGSEKVIDAYCGIG 305 Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281 SL LA+ V VE P+++ A+ N ANH++NV ++ Sbjct: 306 TISLFLAQKARHVYGVESVAPAIDDAKRNAKANHIDNVTFAVGEAETLMPWWYS------ 359 Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILST-T 338 I VDPPR G + A + + A I+Y+SCNP +L RD+ LS Sbjct: 360 ------QGLDPDVIVVDPPRKGCETAMLDAMAAMKPERIVYVSCNPATLARDMKYLSEKG 413 Query: 339 HTIERLALFDQFPYTRHMECGVLLVRK 365 +T++ + D FP T H+E ++ R+ Sbjct: 414 YTVKEVQPVDMFPQTTHVEAVTVMYRE 440 >gi|229154085|ref|ZP_04282210.1| Uncharacterized RNA methyltransferase [Bacillus cereus ATCC 4342] gi|228629365|gb|EEK86067.1| Uncharacterized RNA methyltransferase [Bacillus cereus ATCC 4342] Length = 465 Score = 293 bits (751), Expect = 2e-77, Method: Composition-based stats. Identities = 79/386 (20%), Positives = 149/386 (38%), Gaps = 40/386 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56 L YE QL K ++R +M + + P YR +A+ I Sbjct: 94 GCQLQHLTYEGQLQAKEKQVRDVMQRIGGLGDVPVHPVLGMKTPWVYRNKAQVPIGEREG 153 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEM-----------MATIRLEPLLRAKLF 105 L + Q T + + ++ + + + L+ E+ R + LR + Sbjct: 154 GLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGISAYNEERNKGTLRHVMA 213 Query: 106 QIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161 + +T + +T L + + + ++ + + + +KT + Sbjct: 214 RYGQVTGEIMLVFITRTAELPNKKAIIEEIAAKFPEVKSIVQNVNPKRTNVIFGDKTTVL 273 Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220 +Y+ + + + + SF Q N + + L A +++ YCG Sbjct: 274 YGSEYIYDFIG----DIKFAISARSFYQVNPEQTKVLYDKTLEYAKLDGNETVIDAYCGI 329 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G+ SL LA+ +V VEI ++E A+ N A N++ N + ++ +E Sbjct: 330 GSISLFLAQKAKKVYGVEIVPEAIEDAKRNAALNNMTNAEFGVGEAEVVIPKWYKE---- 385 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST- 337 T+ VDPPR G D+A + + ++Y+SCNP +L RDL +L Sbjct: 386 --------GVIADTMVVDPPRKGCDEALLSTIIDMKPKRVVYVSCNPATLARDLKVLEEG 437 Query: 338 THTIERLALFDQFPYTRHMECGVLLV 363 + + + D FP+T H+EC L Sbjct: 438 GYKTQEVQPVDMFPHTTHVECVAWLK 463 >gi|228983573|ref|ZP_04143778.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228776169|gb|EEM24530.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 458 Score = 293 bits (751), Expect = 2e-77, Method: Composition-based stats. Identities = 79/386 (20%), Positives = 149/386 (38%), Gaps = 40/386 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56 L YE QL K ++R +M + + P YR +A+ I Sbjct: 87 GCQLQHLTYEGQLQAKEKQVRDVMQRIGGLGDVPVHPVLGMKTPWVYRNKAQVPIGEREG 146 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEM-----------MATIRLEPLLRAKLF 105 L + Q T + + ++ + + + L+ E+ R + LR + Sbjct: 147 GLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGISAYNEERNKGTLRHVMA 206 Query: 106 QIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161 + +T + +T L + + + ++ + + + +KT + Sbjct: 207 RYGQVTGEIMLVFITRTAELPNKKAIIEEIAAKFPEVKSIVQNVNPKRTNVIFGDKTTVL 266 Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220 +Y+ + + + + SF Q N + + L A +++ YCG Sbjct: 267 YGSEYIYDFIG----DIKFAISARSFYQVNPEQTKVLYDKTLEYAKLDGNETVIDAYCGI 322 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G+ SL LA+ +V VEI ++E A+ N A N++ N + ++ +E Sbjct: 323 GSISLFLAQKAKKVYGVEIVPEAIEDAKRNAALNNMTNAEFGVGEAEVVIPKWYKE---- 378 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST- 337 T+ VDPPR G D+A + + ++Y+SCNP +L RDL +L Sbjct: 379 --------GVIADTMVVDPPRKGCDEALLSTIIDMKPKRVVYVSCNPATLARDLKVLEEG 430 Query: 338 THTIERLALFDQFPYTRHMECGVLLV 363 + + + D FP+T H+EC L Sbjct: 431 GYKTQEVQPVDMFPHTTHVECVAWLK 456 >gi|206967682|ref|ZP_03228638.1| RNA methyltransferase, TrmA family [Bacillus cereus AH1134] gi|206736602|gb|EDZ53749.1| RNA methyltransferase, TrmA family [Bacillus cereus AH1134] Length = 454 Score = 293 bits (751), Expect = 2e-77, Method: Composition-based stats. Identities = 79/386 (20%), Positives = 148/386 (38%), Gaps = 40/386 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56 L YE QL K ++R +M + + P YR +A+ I Sbjct: 83 GCQLQHLTYEGQLQAKEKQVRDVMQRIGGLGDVPVHPVLGMKNPWVYRNKAQVPIGEREG 142 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEM-----------MATIRLEPLLRAKLF 105 L + Q T + + ++ + + + L+ E+ R + LR + Sbjct: 143 GLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGITAYNEERNKGTLRHVMA 202 Query: 106 QIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161 + +T + +T L + + + ++ + + + +KT + Sbjct: 203 RYGQVTGEIMLVFITRTAELPNKKAIIEEIAAKFPEVKSIVQNVNTKRTNVIFGDKTTVL 262 Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220 +Y+ + + + + SF Q N + + L A +++ YCG Sbjct: 263 YGSEYIHDFIG----DIKFAISARSFYQVNPEQTKVLYDKTLEYAKLNGNETVIDAYCGI 318 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G+ SL LA+ +V VEI ++E A N A N++ N + ++ +E Sbjct: 319 GSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFGVGEAEVVIPKWYKE---- 374 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILST- 337 T+ VDPPR G D+A + + ++Y+SCNP +L RDL +L Sbjct: 375 --------GVIADTMVVDPPRKGCDEALLNTIIDMKPNRVVYVSCNPATLARDLKVLEEG 426 Query: 338 THTIERLALFDQFPYTRHMECGVLLV 363 + + + D FP+T H+EC L Sbjct: 427 GYKTQEVQPVDMFPHTTHVECVAWLK 452 >gi|313623370|gb|EFR93595.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria innocua FSL J1-023] Length = 453 Score = 293 bits (751), Expect = 3e-77, Method: Composition-based stats. Identities = 71/386 (18%), Positives = 147/386 (38%), Gaps = 38/386 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWHDGDD 57 +L Y+ QLA K +++ + M N+++ P YR +++ + Sbjct: 84 GCSLQHLSYDGQLAFKRNQVEETMKRIGKLNVEVPETLGMENPWRYRNKSQVPVGFVNGK 143 Query: 58 LYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLFQ 106 L + +++ + + + + + ++ E + +R + + Sbjct: 144 LTAGFYQKRSHDIIDMSTCLIHNEKGDVAVQKTREILAKYGTEPYDEKTGKGDIRHIMTR 203 Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWREC---AIRLRDALHARKYQIQLIGRANKTKICLD 163 + T Q +VT + + + + Q + ++TK Sbjct: 204 FAHTTGQLMIVLVTTKERLPFKAEIIQDLTNQLEVTSIVQNINPQKTNVIFGDRTKTLWG 263 Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGN 222 D +++ + + + SF Q N + + + A + +++ YCG G+ Sbjct: 264 SDIIEDTIH----GIRFAISARSFYQVNPLQTEVLYQQAIDSAELTGEETVIDAYCGIGS 319 Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282 SL LA+ V VEI +++ AR N N++ N ++E + Sbjct: 320 ISLCLAKKAKHVYGVEIVDQAIQDARANAELNNLTNTTFETGKAEEVIPQWYK------- 372 Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSIL-STTH 339 + + VDPPR G D+ + + A ++Y+SCNP +L RD+ IL + Sbjct: 373 -----NGIVADVLVVDPPRKGCDETLLETILAMKPKKVVYVSCNPGTLARDMKILTEGGY 427 Query: 340 TIERLALFDQFPYTRHMECGVLLVRK 365 +++ D FP T H+E +L K Sbjct: 428 EAKKVQPVDMFPMTTHIEAVTVLTLK 453 >gi|229194707|ref|ZP_04321500.1| Uncharacterized RNA methyltransferase [Bacillus cereus m1293] gi|228588810|gb|EEK46835.1| Uncharacterized RNA methyltransferase [Bacillus cereus m1293] Length = 458 Score = 293 bits (751), Expect = 3e-77, Method: Composition-based stats. Identities = 79/386 (20%), Positives = 149/386 (38%), Gaps = 40/386 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56 L YE QL K ++R +M + + P YR +A+ I Sbjct: 87 GCQLQHLTYEGQLQAKEKQVRDVMQRIGGLGDVPVHPVLGMKTPWVYRNKAQVPIGEREG 146 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEM-----------MATIRLEPLLRAKLF 105 L + Q T + + ++ + + + L+ E+ R + LR + Sbjct: 147 GLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGISAYNEERNKGTLRHVMA 206 Query: 106 QIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161 + +T + +T L + + + ++ + + + +KT + Sbjct: 207 RYGQVTGEIMLVFITRTAELPNKKAIIEEIAAKFPEVKSIVQNVNTKRTNVIFGDKTTVL 266 Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220 +Y+ + + + + SF Q N + + L A +++ YCG Sbjct: 267 YGSEYIYDFIG----DIKFAISARSFYQVNPEQTKVLYDKTLEYAKLDGNETVIDAYCGI 322 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G+ SL LA+ +V VEI ++E A+ N A N++ N + ++ +E Sbjct: 323 GSISLFLAQKAKKVYGVEIVPEAIEDAKRNAALNNMTNAEFGVGEAEVVIPKWYKE---- 378 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST- 337 T+ VDPPR G D+A + + ++Y+SCNP +L RDL +L Sbjct: 379 --------GVIADTMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLARDLKVLEEG 430 Query: 338 THTIERLALFDQFPYTRHMECGVLLV 363 + + + D FP+T H+EC L Sbjct: 431 GYKTQEVQPVDMFPHTTHVECVAWLK 456 >gi|229095036|ref|ZP_04226032.1| Uncharacterized RNA methyltransferase [Bacillus cereus Rock3-29] gi|229113989|ref|ZP_04243415.1| Uncharacterized RNA methyltransferase [Bacillus cereus Rock1-3] gi|228669448|gb|EEL24864.1| Uncharacterized RNA methyltransferase [Bacillus cereus Rock1-3] gi|228688366|gb|EEL42248.1| Uncharacterized RNA methyltransferase [Bacillus cereus Rock3-29] Length = 458 Score = 293 bits (751), Expect = 3e-77, Method: Composition-based stats. Identities = 79/386 (20%), Positives = 148/386 (38%), Gaps = 40/386 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56 L YE QL K ++R +M + + P YR +A+ I Sbjct: 87 GCQLQHLTYEGQLQAKEKQVRDVMQRIGGLSDVPVHPVLGMKNPWVYRNKAQVPIGEREG 146 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEM-----------MATIRLEPLLRAKLF 105 L + Q T + + ++ + + +AL+ E+ R + LR + Sbjct: 147 GLVAGFYRQGTHDIINMESCLIQAEENDALIQEVKRICEKHGISAYNEERNKGTLRHVMA 206 Query: 106 QIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161 + +T + +T L + + + ++ + + + + T + Sbjct: 207 RYGQVTGEIMLVFITRTAELPNKKAIIEEIAAKFPEVKSIVQNVNTKRTNVIFGDTTTVL 266 Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220 +Y+ + + + + SF Q N + + L A +++ YCG Sbjct: 267 YGSEYIYDFIG----DIKFAISARSFYQVNPEQTKVLYDKTLEYAKLDGNETVIDAYCGI 322 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G+ SL LA+ +V VEI ++E A N A N++ N + ++ +E Sbjct: 323 GSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFGVGEAEVVIPKWYKE---- 378 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST- 337 T+ VDPPR G D+A + + ++Y+SCNP +L RDL +L Sbjct: 379 --------GVIADTMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLARDLKVLEEG 430 Query: 338 THTIERLALFDQFPYTRHMECGVLLV 363 + + + D FP+T H+EC L Sbjct: 431 GYKTQEVQPVDMFPHTTHVECVAWLK 456 >gi|294793541|ref|ZP_06758678.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Veillonella sp. 3_1_44] gi|294455111|gb|EFG23483.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Veillonella sp. 3_1_44] Length = 458 Score = 293 bits (750), Expect = 3e-77, Method: Composition-based stats. Identities = 74/382 (19%), Positives = 142/382 (37%), Gaps = 34/382 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI-----FRSEPIHYRMRAEFHIWHDGD 56 L YE QL+ K +++ ++ N ++ +P YR + + + Sbjct: 84 GCQLQHITYEGQLSLKTQKVKDVIERIGHQNPELVKPALGPKDPWAYRNKMQMPVGGTKG 143 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSL---LINALMIEMMATIRLEPL----LRAKLFQIDY 109 D+ + + + ++ +I ++ + +EP + L I Sbjct: 144 DILMGFYAMGSHDIVQGTNCPIQDEGNNIIAQACYQIAKELDVEPYDEHTGKGVLRHIIG 203 Query: 110 LTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD---- 165 QS +V L+ + L + + + + + +T + L Sbjct: 204 RIGQSG-WMVILVTATDNLPHQEKWVKNLTERVPQVETIVHNVN-GKRTNVILGPKNRIL 261 Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNFS 224 Y D +T + L + +SF Q N + + L A + +++ YCG G S Sbjct: 262 YGDGTITDHIKDLRFTLSPHSFFQVNPEQTTVLYDQALKYANLKGEETVIDAYCGTGTIS 321 Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284 L LA V+ +EI +P++ AR N N +N + + + + Sbjct: 322 LFLAHKAKHVIGIEIVEPAIINARENARRNGYDNTEFIVADAA------------VEMPK 369 Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILST-THTI 341 + R I DP R+G + I+Y+SCNP ++ RD+ IL+ + + Sbjct: 370 LYKAGVRPDVIVFDPIRAGCKKEVLTSAAGMEPKRIVYVSCNPATMARDIEILTHYGYEL 429 Query: 342 ERLALFDQFPYTRHMECGVLLV 363 + + D FP T H+E LL Sbjct: 430 QEVQPVDMFPMTAHVEAVALLT 451 >gi|229107991|ref|ZP_04237618.1| Uncharacterized RNA methyltransferase [Bacillus cereus Rock1-15] gi|228675494|gb|EEL30711.1| Uncharacterized RNA methyltransferase [Bacillus cereus Rock1-15] Length = 454 Score = 293 bits (750), Expect = 3e-77, Method: Composition-based stats. Identities = 79/386 (20%), Positives = 148/386 (38%), Gaps = 40/386 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56 L YE QL K ++R +M + + P YR +A+ I Sbjct: 83 GCQLQHLTYEGQLQAKEKQVRDVMQRIGGLANVPVHPVLGMKNPWVYRNKAQVPIGEREG 142 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEM-----------MATIRLEPLLRAKLF 105 L + Q T + + ++ + + + L+ E+ R + LR + Sbjct: 143 GLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGITAYNEERNKGTLRHVMA 202 Query: 106 QIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161 + +T + +T L + + + ++ + + + +KT + Sbjct: 203 RYGQVTGEIMLVFITRTAELPNKKAIIEEIAAKFPEVKSIVQNVNTKRTNVIFGDKTTVL 262 Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220 +Y+ + + + + SF Q N + + L A +++ YCG Sbjct: 263 YGSEYIYDFIG----DIKFAISARSFYQVNPEQTKVLYDKTLEYAKLNGNETVIDAYCGI 318 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G+ SL LA+ +V VEI ++E A N A N++ N + ++ +E Sbjct: 319 GSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFGVGEAEVVIPKWYKE---- 374 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILST- 337 T+ VDPPR G D+A + + ++Y+SCNP +L RDL +L Sbjct: 375 --------GVIADTMVVDPPRKGCDEALLNTIIDMKPNRVVYVSCNPATLARDLKVLEEG 426 Query: 338 THTIERLALFDQFPYTRHMECGVLLV 363 + + + D FP+T H+EC L Sbjct: 427 GYKTQEVQPVDMFPHTTHVECVAWLK 452 >gi|228931823|ref|ZP_04094719.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228827803|gb|EEM73541.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 458 Score = 293 bits (750), Expect = 3e-77, Method: Composition-based stats. Identities = 78/386 (20%), Positives = 149/386 (38%), Gaps = 40/386 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56 L YE QL K ++R +M + + P YR +A+ I Sbjct: 87 GCQLQHLTYEGQLQAKEKQVRDVMQRIGGLGDVPVHPVLGMKNPWVYRNKAQVPIGEREG 146 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEM-----------MATIRLEPLLRAKLF 105 L + Q T + + ++ + + + L+ + R + LR + Sbjct: 147 GLVAGFYRQGTHDIINMESCLIQAEENDTLIQAVKRICEKHGISAYNEERNKGTLRHVMA 206 Query: 106 QIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161 + +T + +T L +++ + ++ + + + +KT + Sbjct: 207 RYGQVTGEIMLVFITRTAELPNKKVIIEEIAAKFPEVKSIVQNVNPKRTNVIFGDKTTVL 266 Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220 +Y+ + + + + SF Q N + + L A +++ YCG Sbjct: 267 YGSEYIYDFIG----DIKFAISARSFYQVNPEQTKVLYDKTLEYAKLDGNETVIDAYCGI 322 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G+ SL LA+ +V VEI ++E A+ N A N++ N + ++ +E Sbjct: 323 GSISLFLAQKAKKVYGVEIVPEAIEDAKRNAALNNMTNAEFGVGEAEVVIPKWYKE---- 378 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST- 337 T+ VDPPR G D+A + + ++Y+SCNP +L RDL +L Sbjct: 379 --------GVIADTMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLARDLKVLEEG 430 Query: 338 THTIERLALFDQFPYTRHMECGVLLV 363 + + + D FP+T H+EC L Sbjct: 431 GYKTQEVQPVDMFPHTTHVECVAWLK 456 >gi|229125816|ref|ZP_04254842.1| Uncharacterized RNA methyltransferase [Bacillus cereus BDRD-Cer4] gi|229143116|ref|ZP_04271549.1| Uncharacterized RNA methyltransferase [Bacillus cereus BDRD-ST24] gi|228640389|gb|EEK96786.1| Uncharacterized RNA methyltransferase [Bacillus cereus BDRD-ST24] gi|228657673|gb|EEL13485.1| Uncharacterized RNA methyltransferase [Bacillus cereus BDRD-Cer4] Length = 454 Score = 293 bits (750), Expect = 3e-77, Method: Composition-based stats. Identities = 79/386 (20%), Positives = 148/386 (38%), Gaps = 40/386 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56 L YE QL K ++R +M + + P YR +A+ I Sbjct: 83 GCQLQHLTYEGQLQAKEKQVRDVMQRIGGLADVPVHPVLGMKNPWVYRNKAQVPIGEREG 142 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEM-----------MATIRLEPLLRAKLF 105 L + Q T + + ++ + + + L+ E+ R + LR + Sbjct: 143 GLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGITAYNEERNKGTLRHVMA 202 Query: 106 QIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161 + +T + +T L + + + ++ + + + +KT + Sbjct: 203 RYGQVTGEIMLVFITRTAELPNKKAIIEEIAAKFPEVKSIVQNVNTKRTNVIFGDKTTVL 262 Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220 +Y+ + + + + SF Q N + + L A +++ YCG Sbjct: 263 YGSEYIYDFIG----DIKFAISARSFYQVNPEQTKVLYDKTLEYAKLNGNETVIDAYCGI 318 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G+ SL LA+ +V VEI ++E A N A N++ N + ++ +E Sbjct: 319 GSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFGVGEAEVVIPKWYKE---- 374 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILST- 337 T+ VDPPR G D+A + + ++Y+SCNP +L RDL +L Sbjct: 375 --------GVIADTMVVDPPRKGCDEALLNTIIDMKPNRVVYVSCNPATLARDLKVLEEG 426 Query: 338 THTIERLALFDQFPYTRHMECGVLLV 363 + + + D FP+T H+EC L Sbjct: 427 GYKTQEVQPVDMFPHTTHVECVAWLK 452 >gi|163938323|ref|YP_001643207.1| RNA methyltransferase [Bacillus weihenstephanensis KBAB4] gi|163860520|gb|ABY41579.1| RNA methyltransferase, TrmA family [Bacillus weihenstephanensis KBAB4] Length = 458 Score = 293 bits (750), Expect = 3e-77, Method: Composition-based stats. Identities = 80/386 (20%), Positives = 147/386 (38%), Gaps = 40/386 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56 L YE QL K ++R +M + + P YR +A+ I Sbjct: 87 GCQLQHLTYEGQLKAKEKQVRDVMQRIGGLSDVPVHPVLGMKNPWVYRNKAQVPIGEREG 146 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEM-----------MATIRLEPLLRAKLF 105 L + Q T + + ++ + + + L+ E+ R + LR + Sbjct: 147 GLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGISAYNEERNKGTLRHVMA 206 Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDAWRECAIR----LRDALHARKYQIQLIGRANKTKIC 161 + +T + +T +A E ++ + + + +KT + Sbjct: 207 RYGQVTGEIMLVFITRTAELPNKEAIIEEIAAKFPEVKSIVQNVNTKRTNVIFGDKTTVL 266 Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220 +Y+ + + + + SF Q N + + L A +++ YCG Sbjct: 267 YGSEYIYDFIG----DIKFAISARSFYQVNPEQTKVLYDKTLEYAKLNGNETVIDAYCGI 322 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G+ SL LA+ +V VEI ++E A N A N++ N + ++ +E Sbjct: 323 GSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFGVGEAEVVIPKWYKE---- 378 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST- 337 T+ VDPPR G D+A + + ++Y+SCNP +L RDL +L Sbjct: 379 --------GVIADTMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLARDLKVLEEG 430 Query: 338 THTIERLALFDQFPYTRHMECGVLLV 363 + + + D FP+T H+EC L Sbjct: 431 GYKTQEVQPVDMFPHTTHVECVAWLK 456 >gi|229131321|ref|ZP_04260222.1| Uncharacterized RNA methyltransferase [Bacillus cereus BDRD-ST196] gi|228652142|gb|EEL08078.1| Uncharacterized RNA methyltransferase [Bacillus cereus BDRD-ST196] Length = 465 Score = 293 bits (750), Expect = 3e-77, Method: Composition-based stats. Identities = 80/386 (20%), Positives = 147/386 (38%), Gaps = 40/386 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56 L YE QL K ++R +M + + P YR +A+ I Sbjct: 94 GCQLQHLTYEGQLQAKEKQVRDVMQRIGGLSDVPVHPVLGMKNPWVYRNKAQVPIGEREG 153 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEM-----------MATIRLEPLLRAKLF 105 L + Q T + + ++ + + + L+ E+ R + LR + Sbjct: 154 GLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGISAYNEERNKGTLRHVMA 213 Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDAWRECAIR----LRDALHARKYQIQLIGRANKTKIC 161 + +T + +T +A E ++ + + + +KT + Sbjct: 214 RYGQVTGEIMLVFITRTAELPNKEAIIEEIAAKFPEVKSIVQNVNTKRTNVIFGDKTTVL 273 Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220 +Y+ + + + + SF Q N + + L A +++ YCG Sbjct: 274 YGSEYIYDFIG----DIKFAISARSFYQVNPEQTKVLYDKTLEYAKLNGNETVIDAYCGI 329 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G+ SL LA+ +V VEI ++E A N A N++ N + ++ +E Sbjct: 330 GSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFGVGEAEVVIPKWYKE---- 385 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST- 337 T+ VDPPR G D+A + + ++Y+SCNP +L RDL +L Sbjct: 386 --------GVIADTMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLARDLKVLEEG 437 Query: 338 THTIERLALFDQFPYTRHMECGVLLV 363 + + + D FP+T H+EC L Sbjct: 438 GYKTQEVQPVDMFPHTTHVECVAWLK 463 >gi|218895441|ref|YP_002443852.1| RNA methyltransferase, TrmA family [Bacillus cereus G9842] gi|228899050|ref|ZP_04063323.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis IBL 4222] gi|218544636|gb|ACK97030.1| RNA methyltransferase, TrmA family [Bacillus cereus G9842] gi|228860625|gb|EEN05012.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis IBL 4222] Length = 454 Score = 293 bits (750), Expect = 3e-77, Method: Composition-based stats. Identities = 79/386 (20%), Positives = 148/386 (38%), Gaps = 40/386 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56 L YE QL K ++R +M + + P YR +A+ I Sbjct: 83 GCQLQHLTYEGQLQAKEKQVRDVMQRIGGLGDVPVHPVLGMKNPWVYRNKAQVPIGEREG 142 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEM-----------MATIRLEPLLRAKLF 105 L + Q T + + ++ + + + L+ E+ R + LR + Sbjct: 143 GLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGITAYNEERNKGTLRHVMA 202 Query: 106 QIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161 + +T + +T L + + + ++ + + + +KT + Sbjct: 203 RYGQVTGEIMLVFITRTAELPNKKAIVEEIAAKFPEVKSIVQNVNTKRTNVIFGDKTTVL 262 Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220 +Y+ + + + + SF Q N + + L A +++ YCG Sbjct: 263 YGSEYIYDFIG----DIKFAISARSFYQVNPEQTKVLYDKTLEYAKLNGNETVIDAYCGI 318 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G+ SL LA+ +V VEI ++E A N A N++ N + ++ +E Sbjct: 319 GSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFGVGEAEVVIPKWYKE---- 374 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILST- 337 T+ VDPPR G D+A + + ++Y+SCNP +L RDL +L Sbjct: 375 --------GVIADTMVVDPPRKGCDEALLNTIIDMKPNRVVYVSCNPATLARDLKVLEEG 426 Query: 338 THTIERLALFDQFPYTRHMECGVLLV 363 + + + D FP+T H+EC L Sbjct: 427 GYKTQEVQPVDMFPHTTHVECVAWLK 452 >gi|229028174|ref|ZP_04184315.1| Uncharacterized RNA methyltransferase [Bacillus cereus AH1271] gi|228733122|gb|EEL83963.1| Uncharacterized RNA methyltransferase [Bacillus cereus AH1271] Length = 465 Score = 293 bits (750), Expect = 3e-77, Method: Composition-based stats. Identities = 78/386 (20%), Positives = 147/386 (38%), Gaps = 40/386 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56 L YE QL K ++R +M + + P YR +A+ I Sbjct: 94 GCQLQHLTYEGQLQAKEKQVRDVMQRIGGLSDVPVHPVLGMKNPWVYRNKAQVPIGEREG 153 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEM-----------MATIRLEPLLRAKLF 105 L + Q T + + ++ + + + L+ E+ R + LR + Sbjct: 154 GLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGISAYNEERNKGTLRHVMA 213 Query: 106 QIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161 + +T + +T L + + + ++ + + + + T + Sbjct: 214 RYGQVTGEIMLVFITRTAELPNKKAIIEEIAAKFPEVKSIVQNVNTKRTNVIFGDTTTVL 273 Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220 +Y+ + + + + SF Q N + + L A +++ YCG Sbjct: 274 YGSEYIYDFIG----DIKFAISARSFYQVNPEQTKVLYDKTLEYAKLDGNETVIDAYCGI 329 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G+ SL LA+ +V VEI ++E A N A N++ N + ++ +E Sbjct: 330 GSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFGVGEAEVVIPKWYKE---- 385 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST- 337 T+ VDPPR G D+A + + ++Y+SCNP +L RDL +L Sbjct: 386 --------GVIADTMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLARDLKVLEEG 437 Query: 338 THTIERLALFDQFPYTRHMECGVLLV 363 + + + D FP+T H+EC L Sbjct: 438 GYKTQEVQPVDMFPHTTHVECVAWLK 463 >gi|229015714|ref|ZP_04172696.1| Uncharacterized RNA methyltransferase [Bacillus cereus AH1273] gi|228745571|gb|EEL95591.1| Uncharacterized RNA methyltransferase [Bacillus cereus AH1273] Length = 458 Score = 293 bits (750), Expect = 3e-77, Method: Composition-based stats. Identities = 77/386 (19%), Positives = 146/386 (37%), Gaps = 40/386 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56 L YE QL K ++R +M + + P YR +A+ I Sbjct: 87 GCQLQHLTYEGQLQAKEKQVRDVMQRIGGLSDVPVHPVLGMKNPWVYRNKAQVPIGEREG 146 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEM-----------MATIRLEPLLRAKLF 105 L + Q T + + ++ + + + L+ E+ + LR + Sbjct: 147 GLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKYGISAYNEEHNKGTLRHVMA 206 Query: 106 QIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161 + +T + +T L + + + ++ + + + + T + Sbjct: 207 RYGQVTGEIMLVFITRTAELPNKKAIIEEIAAKFPEVKSIVQNVNTKRTNVIFGDTTTVL 266 Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220 +Y+ + + + + SF Q N + + L A +++ YCG Sbjct: 267 YGSEYIYDFIG----DIKFAISARSFYQVNPEQTKVLYDKTLEYAQLDGNETVIDAYCGI 322 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G+ SL LA+ +V VEI ++E A N A N++ N + ++ +E Sbjct: 323 GSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFGVGEAEVVIPKWYKE---- 378 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST- 337 T+ VDPPR G D+A + + ++Y+SCNP +L RDL +L Sbjct: 379 --------GVIADTMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLARDLKVLEEG 430 Query: 338 THTIERLALFDQFPYTRHMECGVLLV 363 + + + D FP+T H+EC L Sbjct: 431 GYKTQEVQPVDMFPHTTHVECVAWLK 456 >gi|229021911|ref|ZP_04178475.1| Uncharacterized RNA methyltransferase [Bacillus cereus AH1272] gi|228739383|gb|EEL89815.1| Uncharacterized RNA methyltransferase [Bacillus cereus AH1272] Length = 465 Score = 293 bits (750), Expect = 3e-77, Method: Composition-based stats. Identities = 77/386 (19%), Positives = 146/386 (37%), Gaps = 40/386 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56 L YE QL K ++R +M + + P YR +A+ I Sbjct: 94 GCQLQHLTYEGQLQAKEKQVRDVMQRIGGLSDVPVHPVLGMKNPWVYRNKAQVPIGEREG 153 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEM-----------MATIRLEPLLRAKLF 105 L + Q T + + ++ + + + L+ E+ + LR + Sbjct: 154 GLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKYGISAYNEEHNKGTLRHVMA 213 Query: 106 QIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161 + +T + +T L + + + ++ + + + + T + Sbjct: 214 RYGQVTGEIMLVFITRTAELPNKKAIIEEIAAKFPEVKSIVQNVNTKRTNVIFGDTTTVL 273 Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220 +Y+ + + + + SF Q N + + L A +++ YCG Sbjct: 274 YGSEYIYDFIG----DIKFAISARSFYQVNPEQTKVLYDKTLEYAQLDGNETVIDAYCGI 329 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G+ SL LA+ +V VEI ++E A N A N++ N + ++ +E Sbjct: 330 GSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFGVGEAEVVIPKWYKE---- 385 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST- 337 T+ VDPPR G D+A + + ++Y+SCNP +L RDL +L Sbjct: 386 --------GVIADTMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLARDLKVLEEG 437 Query: 338 THTIERLALFDQFPYTRHMECGVLLV 363 + + + D FP+T H+EC L Sbjct: 438 GYKTQEVQPVDMFPHTTHVECVAWLK 463 >gi|228963414|ref|ZP_04124575.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis serovar sotto str. T04001] gi|228796308|gb|EEM43755.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis serovar sotto str. T04001] Length = 455 Score = 293 bits (750), Expect = 3e-77, Method: Composition-based stats. Identities = 79/386 (20%), Positives = 148/386 (38%), Gaps = 40/386 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56 L YE QL K ++R +M + + P YR +A+ I Sbjct: 83 GCQLQHLTYEGQLQAKEKQVRDVMQRIGGLGDVPVHPVLGMKNPWVYRNKAQVPIGEREG 142 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEM-----------MATIRLEPLLRAKLF 105 L + Q T + + ++ + + + L+ E+ R + LR + Sbjct: 143 GLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGITAYNEERNKGTLRHVMA 202 Query: 106 QIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161 + +T + +T L + + + ++ + + + +KT + Sbjct: 203 RYGQVTGEIMLVFITRTAELPNKKAIVEEIAAKFPEVKSIVQNVNTKRTNVIFGDKTTVL 262 Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220 +Y+ + + + + SF Q N + + L A +++ YCG Sbjct: 263 YGSEYIYDFIG----DIKFAISARSFYQVNPEQTKVLYDKTLEYAKLNGNETVIDAYCGI 318 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G+ SL LA+ +V VEI ++E A N A N++ N + ++ +E Sbjct: 319 GSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFGVGEAEVVIPKWYKE---- 374 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILST- 337 T+ VDPPR G D+A + + ++Y+SCNP +L RDL +L Sbjct: 375 --------GVIADTMVVDPPRKGCDEALLNTIIDMKPNRVVYVSCNPATLARDLKVLEEG 426 Query: 338 THTIERLALFDQFPYTRHMECGVLLV 363 + + + D FP+T H+EC L Sbjct: 427 GYKTQEVQPVDMFPHTTHVECVAWLK 452 >gi|152974246|ref|YP_001373763.1| RNA methyltransferase [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152022998|gb|ABS20768.1| RNA methyltransferase, TrmA family [Bacillus cytotoxicus NVH 391-98] Length = 458 Score = 293 bits (750), Expect = 3e-77, Method: Composition-based stats. Identities = 82/388 (21%), Positives = 160/388 (41%), Gaps = 40/388 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ------IFRSEPIHYRMRAEFHIWHDG 55 L YE+QL +K D + Q + +L+ + +P HYR +++ + Sbjct: 87 GCQLQHLDYEEQLNQKRDIVVQAFQKYMKNSLEEKIRPTLGMKDPWHYRNKSQLQVGRKD 146 Query: 56 DDLYHIMFDQQTKERMRIDYFMP-------GSLLINALMIEMMATIRLEPLLRAKLFQI- 107 + + +++Q + + I + M + ++ ++ ++ +I E + + I Sbjct: 147 EKVITGLYEQNSHRLIDIAHCMIQHKATNEATKVVRRILEKLNISIYNERKGKGLIRTIV 206 Query: 108 DYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIG-------RANKTKI 160 + Q+ + +TLI + + ++ + A K +Q + +KT Sbjct: 207 TRVAVQTGEVQITLITAKDEFPNKEQFIAEVQKQMPAVKSIMQNVNGRKTSVIFGDKTFH 266 Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCG 219 ++ + E L L + +F Q N V + E AA + +++ YCG Sbjct: 267 LAGKEVIQETLG----DLSFELSARAFFQLNPEQTVVLYNEAKKAAALTGKEKIVDAYCG 322 Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279 G L LA V +++ ++ AR N + N K ++++ +E Sbjct: 323 VGTIGLWLANDAAEVRGMDVIPEAIADARKNAKRHGFTNTKYEAGKAEQWLPKWVKE--- 379 Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILST 337 + I VDPPR+G DD + + ++Y+SCNP SL RD+ L Sbjct: 380 ---------GWHPDVIVVDPPRTGCDDKLLETILKVQPKTVVYVSCNPSSLARDVKTLMK 430 Query: 338 THTIERLALFDQFPYTRHMECGVLLVRK 365 ++ +E + D FP+T H+E VLL R+ Sbjct: 431 SYEVEYVQPVDMFPHTAHVETIVLLQRR 458 >gi|229176912|ref|ZP_04304308.1| Uncharacterized RNA methyltransferase [Bacillus cereus 172560W] gi|228606585|gb|EEK64010.1| Uncharacterized RNA methyltransferase [Bacillus cereus 172560W] Length = 454 Score = 293 bits (750), Expect = 3e-77, Method: Composition-based stats. Identities = 79/386 (20%), Positives = 147/386 (38%), Gaps = 40/386 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56 L YE QL K ++R +M + + P YR +A+ I Sbjct: 83 GCQLQHLTYEGQLQAKEKQVRDVMQRIGGLGDVPVHPVLGMENPWVYRNKAQVPIGEREG 142 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEM-----------MATIRLEPLLRAKLF 105 L + Q T + + ++ + + + L+ E+ R + LR + Sbjct: 143 GLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGITAYNEERNKGTLRHVMA 202 Query: 106 QIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161 + +T + +T L + + ++ + + + +KT + Sbjct: 203 RYGQVTGEIMLVFITRTAELPNKNAIIEEIAAKFPEVKSIVQNVNTKRTNVIFGDKTTVL 262 Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220 +Y+ + + + + SF Q N + + L A +++ YCG Sbjct: 263 YGSEYIYDFIG----DIKFAISARSFYQVNPEQTKVLYDKTLEYAKLNGNETVIDAYCGI 318 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G+ SL LA+ +V VEI ++E A N A N++ N + ++ +E Sbjct: 319 GSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFGVGEAEVVIPKWYKE---- 374 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST- 337 T+ VDPPR G D+A + + ++Y+SCNP +L RDL +L Sbjct: 375 --------GVIADTMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLARDLKVLEEG 426 Query: 338 THTIERLALFDQFPYTRHMECGVLLV 363 + + + D FP+T H+EC L Sbjct: 427 GYKTQEVQPVDMFPHTTHVECVAWLK 452 >gi|229148722|ref|ZP_04276972.1| Uncharacterized RNA methyltransferase [Bacillus cereus m1550] gi|228634730|gb|EEK91309.1| Uncharacterized RNA methyltransferase [Bacillus cereus m1550] Length = 454 Score = 293 bits (750), Expect = 3e-77, Method: Composition-based stats. Identities = 79/386 (20%), Positives = 148/386 (38%), Gaps = 40/386 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56 L YE QL K ++R +M + + P YR +A+ I Sbjct: 83 GCQLQHLTYEGQLQAKEKQVRDVMQRIGGLADVPVHPVLGMKNPWVYRNKAQVPIGEREG 142 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEM-----------MATIRLEPLLRAKLF 105 L + Q T + + ++ + + + L+ E+ R + LR + Sbjct: 143 GLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGITAYNEERNKGTLRHVMA 202 Query: 106 QIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161 + +T + +T L + + + ++ + + + +KT + Sbjct: 203 RYGQVTGEIMLVFITRTAELPNKKAIIEEIVAKFPEVKSIVQNVNTKRTNVIFGDKTTVL 262 Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220 +Y+ + + + + SF Q N + + L A +++ YCG Sbjct: 263 YGSEYIYDFIG----DIKFAISARSFYQVNPEQTKVLYDKTLEYAKLNGNETVIDAYCGI 318 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G+ SL LA+ +V VEI ++E A N A N++ N + ++ +E Sbjct: 319 GSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFGVGEAEVVIPKWYKE---- 374 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILST- 337 T+ VDPPR G D+A + + ++Y+SCNP +L RDL +L Sbjct: 375 --------GVIADTMVVDPPRKGCDEALLNTIIDMKPNRVVYVSCNPATLARDLKVLEEG 426 Query: 338 THTIERLALFDQFPYTRHMECGVLLV 363 + + + D FP+T H+EC L Sbjct: 427 GYKTQEIQPVDMFPHTTHVECVAWLK 452 >gi|229101137|ref|ZP_04231903.1| Uncharacterized RNA methyltransferase [Bacillus cereus Rock3-28] gi|228682265|gb|EEL36376.1| Uncharacterized RNA methyltransferase [Bacillus cereus Rock3-28] Length = 465 Score = 293 bits (749), Expect = 4e-77, Method: Composition-based stats. Identities = 79/386 (20%), Positives = 147/386 (38%), Gaps = 40/386 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56 L YE QL K ++R +M + + P YR +A+ I Sbjct: 94 GCQLQHLTYEGQLQAKEKQVRDVMQRIGGLSDVPVHPVLGMKNPWVYRNKAQVPIGEREG 153 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEM-----------MATIRLEPLLRAKLF 105 L + Q T + + ++ + + + L+ E+ R + LR + Sbjct: 154 GLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGISAYNEERNKGTLRHVMA 213 Query: 106 QIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161 + +T + +T L + + + ++ + + + + T + Sbjct: 214 RYGQVTGEIMLVFITRTAELPNKKAIIEEIAAKFPEVKSIVQNVNTKRTNVIFGDTTTVL 273 Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220 +Y+ + + + + SF Q N + + L A +++ YCG Sbjct: 274 YGSEYIYDFIG----DIKFAISARSFYQVNPEQTKVLYDKTLEYAKLDGNETVIDAYCGI 329 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G+ SL LA+ +V VEI ++E A N A N++ N + ++ +E Sbjct: 330 GSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFGVGEAEVVIPKWYKE---- 385 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST- 337 T+ VDPPR G DDA + + ++Y+SCNP +L RDL +L Sbjct: 386 --------GIIADTMVVDPPRKGCDDALLNTIIDMKPKRVVYVSCNPATLARDLKVLEEG 437 Query: 338 THTIERLALFDQFPYTRHMECGVLLV 363 + + + D FP+T H+EC L Sbjct: 438 GYKTQEVQPVDMFPHTTHVECVAWLK 463 >gi|229171165|ref|ZP_04298759.1| Uncharacterized RNA methyltransferase [Bacillus cereus MM3] gi|228612343|gb|EEK69571.1| Uncharacterized RNA methyltransferase [Bacillus cereus MM3] Length = 465 Score = 293 bits (749), Expect = 4e-77, Method: Composition-based stats. Identities = 79/386 (20%), Positives = 147/386 (38%), Gaps = 40/386 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56 L YE QL K ++R +M + + P YR +A+ I Sbjct: 94 GCQLQHLTYEGQLQAKEKQVRDVMQRIGGLSDVPVHPVLGMKNPWVYRNKAQVPIGEREG 153 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEM-----------MATIRLEPLLRAKLF 105 L + Q T + + ++ + + + L+ E+ R + LR + Sbjct: 154 GLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGISAYNEERNKGTLRHVMA 213 Query: 106 QIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161 + +T + +T L + + + ++ + + + + T + Sbjct: 214 RYGQVTGEIMLVFITRTAELPNKKAIIEEIAAKFPEVKSIVQNVNTKRTNVIFGDTTTVL 273 Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220 +Y+ + + + + SF Q N + + L A +++ YCG Sbjct: 274 YGSEYIYDFIG----DIKFAISARSFYQVNPEQTKVLYDKTLEYAKLDGNETVIDAYCGI 329 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G+ SL LA+ +V VEI ++E A N A N++ N + ++ +E Sbjct: 330 GSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFGVGEAEVVIPKWYKE---- 385 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST- 337 T+ VDPPR G DDA + + ++Y+SCNP +L RDL +L Sbjct: 386 --------GIIADTMVVDPPRKGCDDALLNTIIDMKPKRVVYVSCNPATLARDLKVLEEG 437 Query: 338 THTIERLALFDQFPYTRHMECGVLLV 363 + + + D FP+T H+EC L Sbjct: 438 GYKTQEVQPVDMFPHTTHVECVAWLK 463 >gi|47569584|ref|ZP_00240262.1| RNA methyltransferase, TrmA family [Bacillus cereus G9241] gi|47553767|gb|EAL12140.1| RNA methyltransferase, TrmA family [Bacillus cereus G9241] Length = 458 Score = 293 bits (749), Expect = 4e-77, Method: Composition-based stats. Identities = 79/386 (20%), Positives = 148/386 (38%), Gaps = 40/386 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56 L YE QL K ++R +M + + P YR +A+ I Sbjct: 87 GCQLQHLTYEGQLQAKEKQVRDVMQRIGGLGDVPVHPVLGMKTPWVYRNKAQVPIGEREG 146 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEM-----------MATIRLEPLLRAKLF 105 L + Q T + + ++ + + + L+ E+ R + LR + Sbjct: 147 GLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGISAYNEERNKGTLRHVMA 206 Query: 106 QIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161 + +T + +T L + + + ++ + + + +KT + Sbjct: 207 RYGQVTGEIMLVFITRTAELPNKKAIIEEIAAKFPEVKSIVQNVNPKRTNVIFGDKTTVL 266 Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220 +Y+ + + + + SF Q N + + L A +++ YCG Sbjct: 267 YGSEYIYDFIG----DIKFAISARSFYQVNPEQTKVLYDKTLEYAKLDGNETVIDAYCGI 322 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G+ SL LA+ +V VEI ++E A N A N++ N + ++ +E Sbjct: 323 GSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFGVGEAEVVIPKWYKE---- 378 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST- 337 T+ VDPPR G D+A + + ++Y+SCNP +L RDL +L Sbjct: 379 --------GVIADTMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLARDLKVLEEG 430 Query: 338 THTIERLALFDQFPYTRHMECGVLLV 363 + + + D FP+T H+EC L Sbjct: 431 GYKTQEVQPVDMFPHTTHVECVAWLK 456 >gi|182624472|ref|ZP_02952255.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium perfringens D str. JGS1721] gi|177910280|gb|EDT72661.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium perfringens D str. JGS1721] Length = 455 Score = 293 bits (749), Expect = 4e-77, Method: Composition-based stats. Identities = 79/391 (20%), Positives = 151/391 (38%), Gaps = 43/391 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI-----FRSEPIHYRMRAEFHIWHDGD 56 L Y+ QL K DR++ + + I EP YR + + I Sbjct: 81 GCKLQHASYKAQLDFKWDRVKDCVSKIGKLDPSIVKYPLGMEEPWRYRNKVQLPIGLING 140 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLL---INALMIEMMATIRLEP-----------LLRA 102 ++ F ++ + + ++ + + + L + + + P ++R Sbjct: 141 EVKIGFFAPRSHDIIDMESCLIQDEIGDKVVKLTRKWIEKFNIRPYNVDGEYDEKGIVRH 200 Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162 + + + T++ +VT + + + ++ + K IQ I + KT + L Sbjct: 201 IMIRRGFTTNEVMVVLVTNGEKLPHKEEFVDLMVK---NIPGIKSVIQNIN-SKKTNVIL 256 Query: 163 DRD----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELY 217 + + ++ ++ + SF Q N + L A ++ + Y Sbjct: 257 GLESKTLWGEDTISDYIGDFRFNISPLSFFQVNPTQTEVLYGKALEYANLTGNEEVFDAY 316 Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277 CG G +L L++ +V VEI +++ A N N V+NV+ S+ Sbjct: 317 CGTGTITLFLSQKAKKVYGVEIIPQAIDNAWINAKENKVDNVEFFVGESEVV-------- 368 Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSIL 335 + D+ + + VDPPR G D + + I+Y+SC+P +L RDL+IL Sbjct: 369 ----IPDLINKGVKADVVVVDPPRKGCDKKLLDAITNIDAKKIVYVSCDPSTLGRDLAIL 424 Query: 336 ST-THTIERLALFDQFPYTRHMECGVLLVRK 365 + + D FP T H+E V L RK Sbjct: 425 EENGYKTLEVQPVDMFPNTSHVETIVSLRRK 455 >gi|30260503|ref|NP_842880.1| RNA methyltransferase [Bacillus anthracis str. Ames] gi|47525600|ref|YP_016949.1| RNA methyltransferase [Bacillus anthracis str. 'Ames Ancestor'] gi|49183346|ref|YP_026598.1| RNA methyltransferase [Bacillus anthracis str. Sterne] gi|65317755|ref|ZP_00390714.1| COG2265: SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Bacillus anthracis str. A2012] gi|167634215|ref|ZP_02392537.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. A0442] gi|167640112|ref|ZP_02398379.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. A0193] gi|170688363|ref|ZP_02879572.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. A0465] gi|177653642|ref|ZP_02935781.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. A0174] gi|190567579|ref|ZP_03020492.1| RNA methyltransferase, TrmA family [Bacillus anthracis Tsiankovskii-I] gi|227812998|ref|YP_002813007.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. CDC 684] gi|229601940|ref|YP_002864948.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. A0248] gi|254686717|ref|ZP_05150575.1| RNA methyltransferase, TrmA family protein [Bacillus anthracis str. CNEVA-9066] gi|254724793|ref|ZP_05186576.1| RNA methyltransferase, TrmA family protein [Bacillus anthracis str. A1055] gi|254742321|ref|ZP_05200007.1| RNA methyltransferase, TrmA family protein [Bacillus anthracis str. Kruger B] gi|254756096|ref|ZP_05208125.1| RNA methyltransferase, TrmA family protein [Bacillus anthracis str. Vollum] gi|254761914|ref|ZP_05213763.1| RNA methyltransferase, TrmA family protein [Bacillus anthracis str. Australia 94] gi|50401540|sp|Q81ZD6|Y333_BACAN RecName: Full=Uncharacterized RNA methyltransferase BA_0333/GBAA_0333/BAS0318 gi|30253871|gb|AAP24366.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. Ames] gi|47500748|gb|AAT29424.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. 'Ames Ancestor'] gi|49177273|gb|AAT52649.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. Sterne] gi|167511923|gb|EDR87302.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. A0193] gi|167530529|gb|EDR93244.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. A0442] gi|170667695|gb|EDT18449.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. A0465] gi|172081222|gb|EDT66297.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. A0174] gi|190561366|gb|EDV15338.1| RNA methyltransferase, TrmA family [Bacillus anthracis Tsiankovskii-I] gi|227007157|gb|ACP16900.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. CDC 684] gi|229266348|gb|ACQ47985.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. A0248] Length = 458 Score = 293 bits (749), Expect = 4e-77, Method: Composition-based stats. Identities = 80/386 (20%), Positives = 150/386 (38%), Gaps = 40/386 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56 L YE QL K ++R +M + + P YR +A+ I Sbjct: 87 GCQLQHLTYEGQLQAKEKQVRDVMQRIGGLGDVPVHPVLGMKNPWVYRNKAQVPIGEREG 146 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEM-----------MATIRLEPLLRAKLF 105 L + Q T + + ++ + + + L+ E+ R + LR + Sbjct: 147 GLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGISAYNEERNKGTLRHVMA 206 Query: 106 QIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161 + +T + +T L + + + ++ + + + +KT + Sbjct: 207 RYGQVTGEIMLVFITRTAELPNKKAIIEEIAAKFPEVKSIVQNVNPKRTNVIFGDKTTVL 266 Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220 +Y+ + + + + SF Q N + + L A +++ YCG Sbjct: 267 YGSEYIYDFIG----DIKFAISARSFYQVNPEQTKVLYDKTLEYAKLDGNETVIDAYCGI 322 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G+ SL LA+ +V VEI ++E A+ N A N++ N + ++ +E Sbjct: 323 GSISLFLAQKAKKVYGVEIVPEAIEDAKRNAALNNMTNAEFGVGEAEVVIPKWYKE---- 378 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST- 337 T+ VDPPR G D+A + + ++Y+SCNP +L RDL +L Sbjct: 379 --------GVIADTMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLARDLKVLEEG 430 Query: 338 THTIERLALFDQFPYTRHMECGVLLV 363 + + + L D FP+T H+EC L Sbjct: 431 GYKTQEVQLVDMFPHTTHVECVAWLK 456 >gi|228970500|ref|ZP_04131151.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228789232|gb|EEM37160.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis serovar thuringiensis str. T01001] Length = 465 Score = 293 bits (749), Expect = 4e-77, Method: Composition-based stats. Identities = 78/386 (20%), Positives = 147/386 (38%), Gaps = 40/386 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56 L YE QL K ++R +M + + P YR +A+ I Sbjct: 94 GCQLQHLTYEGQLQAKEKQVRDVMQRIGGLADVPVHPVLGMKNPWVYRNKAQVPIGEREG 153 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEM-----------MATIRLEPLLRAKLF 105 L + Q T + + ++ + + + L+ E+ R + LR + Sbjct: 154 GLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGITAYNEERNKGTLRHVMA 213 Query: 106 QIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161 + +T + +T L + + + ++ + + + +KT + Sbjct: 214 RYGQVTGEIMLVFITRTAELPNKKAIIEEIAAKFPEVKSIVQNVNTKRTNVIFGDKTTVL 273 Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220 +Y+ + + + + SF Q N + + L A +++ YCG Sbjct: 274 YGSEYIYDFIG----DIKFAISARSFYQVNPEQTKVLYDKTLEYAKLNGNETVIDAYCGI 329 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G+ SL LA+ +V VEI ++E A N N++ N + ++ +E Sbjct: 330 GSISLFLAQKAKKVYGVEIVPEAIEDANRNAELNNMTNAEFGVGEAEVVIPKWYKE---- 385 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILST- 337 T+ VDPPR G D+A + + ++Y+SCNP +L RDL +L Sbjct: 386 --------GVIADTMVVDPPRKGCDEALLNTIIDMKPNRVVYVSCNPATLARDLKVLEEG 437 Query: 338 THTIERLALFDQFPYTRHMECGVLLV 363 + + + D FP+T H+EC L Sbjct: 438 GYKTQEVQPVDMFPHTTHVECVAWLK 463 >gi|326938107|gb|AEA14003.1| tRNA (Uracil-5-) -methyltransferase [Bacillus thuringiensis serovar chinensis CT-43] Length = 458 Score = 293 bits (749), Expect = 4e-77, Method: Composition-based stats. Identities = 78/386 (20%), Positives = 147/386 (38%), Gaps = 40/386 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56 L YE QL K ++R +M + + P YR +A+ I Sbjct: 87 GCQLQHLTYEGQLQAKEKQVRDVMQRIGGLADVPVHPVLGMKNPWVYRNKAQVPIGEREG 146 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEM-----------MATIRLEPLLRAKLF 105 L + Q T + + ++ + + + L+ E+ R + LR + Sbjct: 147 GLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGITAYNEERNKGTLRHVMA 206 Query: 106 QIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161 + +T + +T L + + + ++ + + + +KT + Sbjct: 207 RYGQVTGEIMLVFITRTAELPNKKAIIEEIAAKFPEVKSIVQNVNTKRTNVIFGDKTTVL 266 Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220 +Y+ + + + + SF Q N + + L A +++ YCG Sbjct: 267 YGSEYIYDFIG----DIKFAISARSFYQVNPEQTKVLYDKTLEYAKLNGNETVIDAYCGI 322 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G+ SL LA+ +V VEI ++E A N N++ N + ++ +E Sbjct: 323 GSISLFLAQKAKKVYGVEIVPEAIEDANRNAELNNMTNAEFGVGEAEVVIPKWYKE---- 378 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILST- 337 T+ VDPPR G D+A + + ++Y+SCNP +L RDL +L Sbjct: 379 --------GVIADTMVVDPPRKGCDEALLNTIIDMKPNRVVYVSCNPATLARDLKVLEEG 430 Query: 338 THTIERLALFDQFPYTRHMECGVLLV 363 + + + D FP+T H+EC L Sbjct: 431 GYKTQEVQPVDMFPHTTHVECVAWLK 456 >gi|229009816|ref|ZP_04167036.1| Uncharacterized RNA methyltransferase [Bacillus mycoides DSM 2048] gi|228751434|gb|EEM01240.1| Uncharacterized RNA methyltransferase [Bacillus mycoides DSM 2048] Length = 465 Score = 293 bits (749), Expect = 4e-77, Method: Composition-based stats. Identities = 80/386 (20%), Positives = 147/386 (38%), Gaps = 40/386 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56 L YE QL K ++R +M + + P YR +A+ I Sbjct: 94 GCQLQHLTYEGQLKAKEKQVRDVMQRIGGLSDVPVHPVLGMKNPWVYRNKAQVPIGEREG 153 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEM-----------MATIRLEPLLRAKLF 105 L + Q T + + ++ + + + L+ E+ R + LR + Sbjct: 154 GLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGISAYNEERNKGTLRHVMA 213 Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDAWRECAIR----LRDALHARKYQIQLIGRANKTKIC 161 + +T + +T +A E ++ + + + +KT + Sbjct: 214 RYGQVTGEIMLVFITRTAELPNKEAIIEEIAAKFPEVKSIVQNVNTKRTNVIFGDKTTVL 273 Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220 +Y+ + + + + SF Q N + + L A +++ YCG Sbjct: 274 YGSEYIYDFIG----DIKFAISARSFYQVNPEQTKVLYDKTLEYAKLNGDETVIDAYCGI 329 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G+ SL LA+ +V VEI ++E A N A N++ N + ++ +E Sbjct: 330 GSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFGVGEAEVVIPKWYKE---- 385 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST- 337 T+ VDPPR G D+A + + ++Y+SCNP +L RDL +L Sbjct: 386 --------GVIADTMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLARDLKVLEEG 437 Query: 338 THTIERLALFDQFPYTRHMECGVLLV 363 + + + D FP+T H+EC L Sbjct: 438 GYKTQEVQPVDMFPHTTHVECVTWLK 463 >gi|218233353|ref|YP_002365162.1| RNA methyltransferase, TrmA family [Bacillus cereus B4264] gi|218161310|gb|ACK61302.1| RNA methyltransferase, TrmA family [Bacillus cereus B4264] Length = 454 Score = 293 bits (749), Expect = 4e-77, Method: Composition-based stats. Identities = 79/386 (20%), Positives = 148/386 (38%), Gaps = 40/386 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56 L YE QL K ++R +M + + P YR +A+ I Sbjct: 83 GCQLQHLSYEGQLQAKEKQVRDVMQRIGGLADVPVHPVLGMQNPWVYRNKAQVPIGEREG 142 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEM-----------MATIRLEPLLRAKLF 105 L + Q T + + ++ + + + L+ E+ R + LR + Sbjct: 143 GLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGITAYNEERNKGTLRHVMA 202 Query: 106 QIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161 + +T + +T L + + + ++ + + + +KT + Sbjct: 203 RYGQVTGEIMLVFITRTAELPNKKAIIEEIAAKFPEVKSIVQNVNTKRTNVIFGDKTTVL 262 Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220 +Y+ + + + + SF Q N + + L A +++ YCG Sbjct: 263 YGSEYIYDFIG----DIKFAISARSFYQVNPEQTKVLYDKTLEYAKLNGNETVIDAYCGI 318 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G+ SL LA+ +V VEI ++E A N A N++ N + ++ +E Sbjct: 319 GSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFGVGEAEVVIPKWYKE---- 374 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILST- 337 T+ VDPPR G D+A + + ++Y+SCNP +L RDL +L Sbjct: 375 --------GVIADTMVVDPPRKGCDEALLNTIIDMKPNRVVYVSCNPATLARDLKVLEEG 426 Query: 338 THTIERLALFDQFPYTRHMECGVLLV 363 + + + D FP+T H+EC L Sbjct: 427 GYKTQEVQPVDMFPHTTHVECVAWLK 452 >gi|149180724|ref|ZP_01859227.1| YefA [Bacillus sp. SG-1] gi|148851514|gb|EDL65661.1| YefA [Bacillus sp. SG-1] Length = 457 Score = 292 bits (748), Expect = 5e-77, Method: Composition-based stats. Identities = 79/385 (20%), Positives = 143/385 (37%), Gaps = 34/385 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56 + YE QL K +R +M + + P YR +A + Sbjct: 86 GCQVQHISYEGQLKAKEKHVRDVMARIGKLPDVPVHPTLGMENPWRYRNKAAVPVGEREG 145 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATI-------RLEPLLRAKLFQIDY 109 L + Q++ E + ++ + + ++ ++ E R L I Sbjct: 146 GLVAGFYQQRSHEIIDMERCVIQHEKNDEIVQKVKEICQKYGIRPYNEEKHRGTLRHIMT 205 Query: 110 LTS-QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD--- 165 Q+ + +V L+ + + ++ K IQ + + +T + + + Sbjct: 206 RYGYQTGEVMVVLVTRTADLPNKNQIVDEIVSSIEGVKSVIQNVN-SKRTNVIMGDETNV 264 Query: 166 -YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNF 223 + +E + + + SF Q N + E L A ++++ YCG G Sbjct: 265 LWGEEVIYDYIGDVKFAISARSFYQVNPEQTRVLYEKALEYADLSGDENVIDAYCGIGTI 324 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 SL LA+ +V VEI ++E A+ N N N + ++ E Sbjct: 325 SLFLAQKAKKVYGVEIVPQAIEDAKKNAELNGFTNTEFEAGPAEVVIPRWYDE------- 377 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILS-TTHT 340 + + VDPPR G D+A + + ++Y+SCNP +L RDL +L + Sbjct: 378 -----GIKADVLVVDPPRKGCDEALLNTILEMKPRKVVYVSCNPATLARDLQVLEDGGYR 432 Query: 341 IERLALFDQFPYTRHMECGVLLVRK 365 + D FP T H+EC LV K Sbjct: 433 TLEVQPVDMFPQTMHVECVAQLVLK 457 >gi|313637426|gb|EFS02888.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria seeligeri FSL S4-171] Length = 453 Score = 292 bits (748), Expect = 5e-77, Method: Composition-based stats. Identities = 76/386 (19%), Positives = 148/386 (38%), Gaps = 38/386 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWHDGDD 57 +L Y QLA K +++ + M N+++ P YR +++ + Sbjct: 84 GCSLQHLSYVGQLAFKRNQVEETMKRIGKLNVEVKETLGMENPWRYRNKSQVPVGFVNGK 143 Query: 58 LYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLFQ 106 L + +++ E + + + S ++ E + +R + + Sbjct: 144 LTAGFYQKRSHEIIDMSTCLIQSEQGDFAVQKTREVLAKYGTEPYDEKTGKGDIRHIMTR 203 Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWREC---AIRLRDALHARKYQIQLIGRANKTKICLD 163 + T Q +VT + + L + Q + ++TK Sbjct: 204 FAHTTGQLMLVLVTTKDRLPFKEEIIRDLTEQLALTSIVQNINPQKTNVIFGDRTKTLWG 263 Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELYCGNGN 222 +D +++ + + + SF Q N + + + AA + +++ YCG G+ Sbjct: 264 KDIIEDTIH----GIRFAISARSFYQVNPLQTEVLYQQAIEAAELTGEETVIDAYCGIGS 319 Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282 SL LA+ V VEI +++ AR N N+++N ++E + Sbjct: 320 ISLCLAKKAKHVYGVEIVDQAIQDARANAELNNLSNTTFETGKAEEVIPTWYKA------ 373 Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILS-TTH 339 + VDPPR G D+ + + A ++Y+SCNP +L RD+ ILS + Sbjct: 374 ------GIVADVLVVDPPRKGCDEKLLQTILAMKPKKVVYVSCNPGTLARDMKILSDGGY 427 Query: 340 TIERLALFDQFPYTRHMECGVLLVRK 365 ++ D FP T H+E +L K Sbjct: 428 EANQVQPVDMFPMTTHIEAVTVLNLK 453 >gi|327438590|dbj|BAK14955.1| SAM-dependent methyltransferase [Solibacillus silvestris StLB046] Length = 454 Score = 292 bits (748), Expect = 5e-77, Method: Composition-based stats. Identities = 76/386 (19%), Positives = 145/386 (37%), Gaps = 40/386 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWH-DGD 56 L YE QL K + + +M + + EP HYR +++ + Sbjct: 83 GCQLQHLSYEGQLKWKQNMVANVMKRLGKIDAPVHPVKGMEEPWHYRNKSQIPFAQNESG 142 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKLF 105 + + ++ + ++ + + + +M ++ + + + +LR + Sbjct: 143 QMVAGFYKTKSHSIVDMERCLIQTGEADVVMADLKRELEILGLRPYDEKSHQGMLRHVVV 202 Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD 165 + T + +V L+ ++R + +Q + KT + D Sbjct: 203 RKGRATG---EVMVVLVTKSKKFPQASAVIEKIRALIPNVTSIVQNVN-GEKTNVIFGND 258 Query: 166 ----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220 + + + + + SF Q N + + L A +++ YCG Sbjct: 259 TFTLWGKDTIEDTIGNVRFEISARSFYQVNPVQTEVLYKQALDYAQLTGNERVIDAYCGI 318 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G+ SL LA+ V+ VEI + ++E A+ N A N N ++E +E Sbjct: 319 GSISLFLAQKAGHVMGVEIVEQAIEDAKRNAALNGFTNTYFEAGPAEEVIPRWYKE---- 374 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILS-T 337 + VDPPR G D+A + + Q ++Y+SCNP +L RDL IL Sbjct: 375 --------GKEADVLVVDPPRKGCDEALLSTIIEQKPKRVVYVSCNPATLARDLRILEDG 426 Query: 338 THTIERLALFDQFPYTRHMECGVLLV 363 + + + D FP+T H E L Sbjct: 427 GYKTQEVQPVDMFPHTTHCEAVAWLE 452 >gi|165871358|ref|ZP_02216006.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. A0488] gi|170708771|ref|ZP_02899208.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. A0389] gi|164712842|gb|EDR18371.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. A0488] gi|170126350|gb|EDS95240.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. A0389] Length = 454 Score = 292 bits (748), Expect = 5e-77, Method: Composition-based stats. Identities = 80/386 (20%), Positives = 150/386 (38%), Gaps = 40/386 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56 L YE QL K ++R +M + + P YR +A+ I Sbjct: 83 GCQLQHLTYEGQLQAKEKQVRDVMQRIGGLGDVPVHPVLGMKNPWVYRNKAQVPIGEREG 142 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEM-----------MATIRLEPLLRAKLF 105 L + Q T + + ++ + + + L+ E+ R + LR + Sbjct: 143 GLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGISAYNEERNKGTLRHVMA 202 Query: 106 QIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161 + +T + +T L + + + ++ + + + +KT + Sbjct: 203 RYGQVTGEIMLVFITRTAELPNKKAIIEEIAAKFPEVKSIVQNVNPKRTNVIFGDKTTVL 262 Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220 +Y+ + + + + SF Q N + + L A +++ YCG Sbjct: 263 YGSEYIYDFIG----DIKFAISARSFYQVNPEQTKVLYDKTLEYAKLDGNETVIDAYCGI 318 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G+ SL LA+ +V VEI ++E A+ N A N++ N + ++ +E Sbjct: 319 GSISLFLAQKAKKVYGVEIVPEAIEDAKRNAALNNMTNAEFGVGEAEVVIPKWYKE---- 374 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST- 337 T+ VDPPR G D+A + + ++Y+SCNP +L RDL +L Sbjct: 375 --------GVIADTMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLARDLKVLEEG 426 Query: 338 THTIERLALFDQFPYTRHMECGVLLV 363 + + + L D FP+T H+EC L Sbjct: 427 GYKTQEVQLVDMFPHTTHVECVAWLK 452 >gi|254739058|ref|ZP_05196760.1| RNA methyltransferase, TrmA family protein [Bacillus anthracis str. Western North America USA6153] Length = 404 Score = 292 bits (748), Expect = 5e-77, Method: Composition-based stats. Identities = 80/386 (20%), Positives = 150/386 (38%), Gaps = 40/386 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56 L YE QL K ++R +M + + P YR +A+ I Sbjct: 33 GCQLQHLTYEGQLQAKEKQVRDVMQRIGGLGDVPVHPVLGMKNPWVYRNKAQVPIGEREG 92 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEM-----------MATIRLEPLLRAKLF 105 L + Q T + + ++ + + + L+ E+ R + LR + Sbjct: 93 GLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGISAYNEERNKGTLRHVMA 152 Query: 106 QIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161 + +T + +T L + + + ++ + + + +KT + Sbjct: 153 RYGQVTGEIMLVFITRTAELPNKKAIIEEIAAKFPEVKSIVQNVNPKRTNVIFGDKTTVL 212 Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220 +Y+ + + + + SF Q N + + L A +++ YCG Sbjct: 213 YGSEYIYDFIG----DIKFAISARSFYQVNPEQTKVLYDKTLEYAKLDGNETVIDAYCGI 268 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G+ SL LA+ +V VEI ++E A+ N A N++ N + ++ +E Sbjct: 269 GSISLFLAQKAKKVYGVEIVPEAIEDAKRNAALNNMTNAEFGVGEAEVVIPKWYKE---- 324 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST- 337 T+ VDPPR G D+A + + ++Y+SCNP +L RDL +L Sbjct: 325 --------GVIADTMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLARDLKVLEEG 376 Query: 338 THTIERLALFDQFPYTRHMECGVLLV 363 + + + L D FP+T H+EC L Sbjct: 377 GYKTQEVQLVDMFPHTTHVECVAWLK 402 >gi|229068074|ref|ZP_04201382.1| Uncharacterized RNA methyltransferase [Bacillus cereus F65185] gi|228715082|gb|EEL66949.1| Uncharacterized RNA methyltransferase [Bacillus cereus F65185] Length = 454 Score = 292 bits (748), Expect = 5e-77, Method: Composition-based stats. Identities = 79/386 (20%), Positives = 147/386 (38%), Gaps = 40/386 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56 L YE QL K ++R +M + + P YR +A+ I Sbjct: 83 GCQLQHLTYEGQLQAKEKQVRDVMQRIGGLGDVPVHPVLGMKNPWVYRNKAQVPIGEREG 142 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEM-----------MATIRLEPLLRAKLF 105 L + Q T + + ++ + + + L+ E+ R + LR + Sbjct: 143 GLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGITAYNEERNKGTLRHVMA 202 Query: 106 QIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161 + +T + +T L + + ++ + + + +KT + Sbjct: 203 RYGQVTGEIMLVFITRTAELPNKNAIIEEIAAKFPEVKSIVQNVNTKRTNVIFGDKTTVL 262 Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220 +Y+ + + + + SF Q N + + L A +++ YCG Sbjct: 263 YGSEYIYDFIG----DIKFAISARSFYQVNPEQTKVLYDKTLEYAKLNGNETVIDAYCGI 318 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G+ SL LA+ +V VEI ++E A N A N++ N + ++ +E Sbjct: 319 GSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFGVGEAEVVIPKWYKE---- 374 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST- 337 T+ VDPPR G D+A + + ++Y+SCNP +L RDL +L Sbjct: 375 --------GVIADTMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLARDLKVLEEG 426 Query: 338 THTIERLALFDQFPYTRHMECGVLLV 363 + + + D FP+T H+EC L Sbjct: 427 GYKTQEVQPVDMFPHTTHVECVAWLK 452 >gi|229829394|ref|ZP_04455463.1| hypothetical protein GCWU000342_01484 [Shuttleworthia satelles DSM 14600] gi|229791825|gb|EEP27939.1| hypothetical protein GCWU000342_01484 [Shuttleworthia satelles DSM 14600] Length = 468 Score = 292 bits (748), Expect = 5e-77, Method: Composition-based stats. Identities = 87/398 (21%), Positives = 152/398 (38%), Gaps = 40/398 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-------------VPNLQIFRSEPIHYRMRAE 48 L YE+Q A K R+R ++ V + + YR +A+ Sbjct: 79 GCQLQALSYEKQKAWKEARVRNDLIRIGGFAPELVDRVVDRVMEPILGMEKAFRYRNKAQ 138 Query: 49 FHIWHDG-DDLYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRL 96 F + + ++ + ++ + ID + G+ + A I + Sbjct: 139 FPLGENREGEIISGFYAARSHRIIPIDDCLLGAPENESILKAVKDYMRACRIRPYNEVTG 198 Query: 97 EPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRL---RDALHARKYQIQLIG 153 L+R L + + + Q ++ + ++ + + + Sbjct: 199 RGLVRHVLIRKGFASGQIMVCLIINGRELPRQQELIDRLTKIVGMKSICINSNCKQSNVI 258 Query: 154 RANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGD 212 ++T+ + E +T + + SF Q N + E L A Q Sbjct: 259 MGDETRCIWGQ----ESITDYIGDIAFAISPRSFYQVNPYQTARLYEKALEYADLKGQES 314 Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + +LYCG G SL LAR +V VEI ++E A+ N N + N ++E Sbjct: 315 VWDLYCGIGTISLFLARKAGQVYGVEIIPEAIEDAKANARRNGIENAHFFVGKAEEILPD 374 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCR 330 R + + I VDPPR G DD + M++ P I+Y+SC+P +L R Sbjct: 375 FYE----GRRDAVAGDALHPDVIVVDPPRKGCDDICLQTMLRMRPDRIVYVSCDPATLAR 430 Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRKPS 367 DL L ++++R+ DQFP T H+EC L+ R S Sbjct: 431 DLKTLAEGGYSLQRVCPVDQFPQTTHVECIALIQRVKS 468 >gi|57167831|ref|ZP_00366971.1| tRNA (uracil-5-)-methyltransferase [Campylobacter coli RM2228] gi|57020953|gb|EAL57617.1| tRNA (uracil-5-)-methyltransferase [Campylobacter coli RM2228] Length = 362 Score = 292 bits (748), Expect = 5e-77, Method: Composition-based stats. Identities = 132/351 (37%), Positives = 209/351 (59%), Gaps = 10/351 (2%) Query: 14 LAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRI 73 L EK +++ F N ++F S+ HYR RAE +HD D++Y+ MF + K+++ I Sbjct: 12 LEEKASFIKEFFKDFYQGNFELFSSKDKHYRTRAELSFYHDKDEIYYAMF--ENKKKIII 69 Query: 74 DYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRE 133 + I A M +++ IR L+ KLF +++L ++++ + TL+YH+ ++ + + Sbjct: 70 ESLEFADEKITAFMPKLLKQIRNNTNLKEKLFGVEFLATKNELS-TTLLYHKNIELIYND 128 Query: 134 CAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAG 193 + + LI R+ K+ ++ + + L + GR + Y + F QPN Sbjct: 129 LNN------LSLELDANLIARSKGKKLVFKKENLRQELDIQGRKIFYEFNNDCFIQPNTS 182 Query: 194 INVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIA 252 IN M+ WV + DLLELYCG GNF+L LA F+ VLA EI+K ++ A N Sbjct: 183 INEKMITWVCENLKTQERKDLLELYCGYGNFTLALAIFFNNVLATEISKSNINFALLNCK 242 Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312 N+++N+ R+SS+E +QA+++EREF RLKDID+ ++ F I VDPPR+GLD + + ++ Sbjct: 243 INNISNIHFTRLSSEELSQALKKEREFFRLKDIDLDNFNFSHILVDPPRAGLDKSVIDLI 302 Query: 313 QAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363 + Y +I+YISCNP SL +L L+ TH +E+ ALFDQF T H+ECGVLL Sbjct: 303 KNYENIIYISCNPISLKENLKELALTHKVEKFALFDQFVNTPHLECGVLLK 353 >gi|228937613|ref|ZP_04100251.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228977069|ref|ZP_04137472.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis Bt407] gi|228782686|gb|EEM30861.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis Bt407] gi|228822094|gb|EEM68084.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 454 Score = 292 bits (748), Expect = 6e-77, Method: Composition-based stats. Identities = 78/386 (20%), Positives = 147/386 (38%), Gaps = 40/386 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56 L YE QL K ++R +M + + P YR +A+ I Sbjct: 83 GCQLQHLTYEGQLQAKEKQVRDVMQRIGGLADVPVHPVLGMKNPWVYRNKAQVPIGEREG 142 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEM-----------MATIRLEPLLRAKLF 105 L + Q T + + ++ + + + L+ E+ R + LR + Sbjct: 143 GLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGITAYNEERNKGTLRHVMA 202 Query: 106 QIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161 + +T + +T L + + + ++ + + + +KT + Sbjct: 203 RYGQVTGEIMLVFITRTAELPNKKAIIEEIAAKFPEVKSIVQNVNTKRTNVIFGDKTTVL 262 Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220 +Y+ + + + + SF Q N + + L A +++ YCG Sbjct: 263 YGSEYIYDFIG----DIKFAISARSFYQVNPEQTKVLYDKTLEYAKLNGNETVIDAYCGI 318 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G+ SL LA+ +V VEI ++E A N N++ N + ++ +E Sbjct: 319 GSISLFLAQKAKKVYGVEIVPEAIEDANRNAELNNMTNAEFGVGEAEVVIPKWYKE---- 374 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILST- 337 T+ VDPPR G D+A + + ++Y+SCNP +L RDL +L Sbjct: 375 --------GVIADTMVVDPPRKGCDEALLNTIIDMKPNRVVYVSCNPATLARDLKVLEEG 426 Query: 338 THTIERLALFDQFPYTRHMECGVLLV 363 + + + D FP+T H+EC L Sbjct: 427 GYKTQEVQPVDMFPHTTHVECVAWLK 452 >gi|308172559|ref|YP_003919264.1| RNA methyltransferase, TrmA family [Bacillus amyloliquefaciens DSM 7] gi|307605423|emb|CBI41794.1| RNA methyltransferase, TrmA family [Bacillus amyloliquefaciens DSM 7] gi|328552324|gb|AEB22816.1| RNA methyltransferase, TrmA family protein [Bacillus amyloliquefaciens TA208] gi|328910668|gb|AEB62264.1| RNA methyltransferase, TrmA family [Bacillus amyloliquefaciens LL3] Length = 458 Score = 292 bits (748), Expect = 6e-77, Method: Composition-based stats. Identities = 73/390 (18%), Positives = 144/390 (36%), Gaps = 42/390 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN-------LQIFRSEPIHYRMRAEFHIWHD 54 L YE QL K +++ ++ + + +P +YR +A+ + Sbjct: 85 GCQLQHMTYEGQLLFKQKQVKDVLERIGKLDLSSVIVHPTLGMEDPWNYRNKAQVPVGER 144 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGS-----------LLINALMIEMMATIRLEPLLRAK 103 L + Q++ + + + + + ++ R + LR Sbjct: 145 EGGLVAGFYQQRSHDIIDMSACLIQQSKNDEAVQAVKDICANYGVKAYNEERHKGWLRHI 204 Query: 104 LFQIDYLTSQSDQAIVTL---IYHR-LLDDAWRECAIRLRDALHARKYQIQLIGRANKTK 159 + + +T + +T H+ + + ++ + + N+T Sbjct: 205 MVRYGVVTGEMMIVFITRTSDFPHKAKIIEDITAQFPHVKSIVQNINPNKTNVIFGNETS 264 Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYC 218 + +Y+ + + + + SF Q N + + L A + +++ YC Sbjct: 265 VIWGEEYIYDLIG----DVKFAISARSFYQVNPEQTKVLYDKALEYAELQGKETVIDAYC 320 Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278 G G SL LA+ +V VEI ++E A+ N N + N + ++ E Sbjct: 321 GIGTISLFLAKQAKKVYGVEIVPEAIEDAKRNAELNGITNAEFAVGEAETVIPKWYEE-- 378 Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILS 336 T+ VDPPR G D+A + + ++Y+SCNP +L RDL +L Sbjct: 379 ----------GITADTLVVDPPRKGCDEALLRTIIEMKPKRVVYVSCNPGTLARDLRVLE 428 Query: 337 -TTHTIERLALFDQFPYTRHMECGVLLVRK 365 + + D FP+T H+EC L K Sbjct: 429 DGGYQTLEVQPVDMFPHTNHVECVAKLELK 458 >gi|321314402|ref|YP_004206689.1| putative RNA methyltransferase [Bacillus subtilis BSn5] gi|320020676|gb|ADV95662.1| putative RNA methyltransferase [Bacillus subtilis BSn5] Length = 461 Score = 292 bits (748), Expect = 6e-77, Method: Composition-based stats. Identities = 73/390 (18%), Positives = 146/390 (37%), Gaps = 42/390 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-------VPNLQIFRSEPIHYRMRAEFHIWHD 54 L YE QL K +++ ++ + + +P +YR +A+ + Sbjct: 85 GCQLQHMTYEGQLLFKQKQVKDVLERIGKLDLSNVTVHPTLGMEDPWNYRNKAQVPVGER 144 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGS-----------LLINALMIEMMATIRLEPLLRAK 103 L + Q++ + + + + + ++ R + LR Sbjct: 145 EGGLVAGFYQQRSHDIIDMSACLIQQSKNDEAVQAVKDICANYGVKAYNEERHKGWLRHI 204 Query: 104 LFQIDYLTSQSDQAIVTL---IYHR-LLDDAWRECAIRLRDALHARKYQIQLIGRANKTK 159 + + +T + +T H+ + + ++ + + N+T Sbjct: 205 MVRYGVVTGEMMIVFITRTSDFPHKAKVIEDITAQFPHVKSIVQNINPNKTNVIFGNETN 264 Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYC 218 + +Y+ + + + + SF Q N + + L A + +++ YC Sbjct: 265 VIWGEEYIYDLIG----DVKFAISARSFYQVNPEQTKVLYDKALEYAELQGEETVIDAYC 320 Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278 G G SL LA+ +V VEI ++E A+ N N + N + ++ E Sbjct: 321 GIGTISLFLAKQAKKVYGVEIVPEAIEDAKRNAELNGITNAEFAVGEAETVIPKWYEE-- 378 Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILS 336 T+ VDPPR G D+A + + ++Y+SCNP +L RDL +L Sbjct: 379 ----------GIAADTLVVDPPRKGCDEALLRTILEMKPKRVVYVSCNPGTLARDLRVLE 428 Query: 337 -TTHTIERLALFDQFPYTRHMECGVLLVRK 365 + + D FP+T H+EC V+L + Sbjct: 429 DGGYVTREVQPVDMFPHTNHVECVVVLELR 458 >gi|291541472|emb|CBL14582.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Ruminococcus bromii L2-63] Length = 494 Score = 292 bits (748), Expect = 6e-77, Method: Composition-based stats. Identities = 82/394 (20%), Positives = 156/394 (39%), Gaps = 45/394 (11%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDG-DDLYH 60 L Y +QL K ++ +++ F I P HYR + + + D + Sbjct: 20 GCQLQNLSYPEQLEFKQKKVEKLLKRFCTVEKIIGMKTPYHYRNKVQAAFYTDKKGKIIS 79 Query: 61 IMFDQQTKERMRIDYF----MPGSLLINALMIEM-------MATIRLEPLLRAKLFQIDY 109 ++ + + ID + +I A+ + + LR L + + Sbjct: 80 GVYQSGSHHVVGIDSCQTEDVIADKIIVAVRKLLPSFRMTTYNEDTGKGFLRHILVKRGF 139 Query: 110 LTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGR-------ANKTKICL 162 T+Q +VT + + + +Q I + K+ Sbjct: 140 ATNQIMLVLVT---GTPVFPSKNNFVKAILKQFPEITTIVQNINPYRTNLVLGDNQKVLY 196 Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNG 221 + Y+++ L +R SF Q N + + A +L+ YCG G Sbjct: 197 GKGYIEDILC----GCRFRISPKSFYQINPVQTEVLYGKAIEFANLKGNETVLDTYCGIG 252 Query: 222 NFSLVLARH-FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 ++ A++ V+ E+ +V A N AN++ N++ + + EF + E E Sbjct: 253 TIGIIAAKNGAGNVIGAELNGDAVRDAIVNARANNLKNIRFYKADAGEFMREATDEDE-- 310 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCRDLSILST- 337 + +F+DPPR+G D + +++ P ++Y+SCNP++L RDL+ L+ Sbjct: 311 ----------KPDVVFMDPPRAGSDRKFLDSLIKMSPKKVVYVSCNPETLARDLAYLTQN 360 Query: 338 -THTIERLALFDQFPYTRHMECGVLLV-RKPSGW 369 + +++ D FP+T H+E VLL +KP G Sbjct: 361 SPYKAQKIQPVDMFPHTAHIETVVLLSHKKPDGH 394 >gi|229083613|ref|ZP_04215941.1| Uncharacterized RNA methyltransferase [Bacillus cereus Rock3-44] gi|228699703|gb|EEL52360.1| Uncharacterized RNA methyltransferase [Bacillus cereus Rock3-44] Length = 465 Score = 292 bits (747), Expect = 6e-77, Method: Composition-based stats. Identities = 81/385 (21%), Positives = 142/385 (36%), Gaps = 38/385 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56 + YE QL K ++R +M + + P YR +A+ I Sbjct: 94 GCQVQHLTYEGQLKAKEKQVRDVMQRIGGLQDVPVHPVLGMENPWVYRNKAQVPIGEREG 153 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-----------LRAKLF 105 L + Q T + + ++ + + + L+ E+ + LR + Sbjct: 154 GLVAGFYRQGTHDIINMETCLIQAEENDTLIQEVKRICEKHGIAAYNEERHKGTLRHVMA 213 Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD 165 + +T + +T +A E + K +Q + I D Sbjct: 214 RYGQVTGEIMLVFITRTAELPNKEAIIE---EIATKFPEVKSIVQNVNTKRTNVIFGDTT 270 Query: 166 ---YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNG 221 Y E + + + SF Q N + + L A +++ YCG G Sbjct: 271 TVLYGSEYIYDFIGDIKFAISARSFYQVNPEQTKVLYDKALEYAKLDGNETVIDAYCGIG 330 Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281 + SL LA+ +V VEI ++E A+ N N++ N + ++ +E Sbjct: 331 SISLFLAQKAKKVYGVEIVPEAIEDAKRNAELNNMTNAEFAVGEAEVVIPNWYKE----- 385 Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST-T 338 TI VDPPR G D+A + + ++Y+SCNP +L RDL +L Sbjct: 386 -------GIIADTIVVDPPRKGCDEALLNTIIEMKPKRVVYVSCNPATLARDLKVLEEGG 438 Query: 339 HTIERLALFDQFPYTRHMECGVLLV 363 + + + D FP+T H+EC L Sbjct: 439 YKTQEVQPVDMFPHTTHVECVAWLE 463 >gi|323703882|ref|ZP_08115516.1| RNA methyltransferase, TrmA family [Desulfotomaculum nigrificans DSM 574] gi|323531170|gb|EGB21075.1| RNA methyltransferase, TrmA family [Desulfotomaculum nigrificans DSM 574] Length = 462 Score = 292 bits (747), Expect = 6e-77, Method: Composition-based stats. Identities = 84/393 (21%), Positives = 145/393 (36%), Gaps = 43/393 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56 L Y+ QL K ++ + I P HYR + H Sbjct: 85 GCQLQHLDYQAQLTHKTTLVKSALTRIGGLNDVPVRPTIGMEYPWHYRNKIHLHATQSAG 144 Query: 57 DLYHIMFDQQTKERM--------------RIDYFMPGSLLINALMIEMMATIRLEPLLRA 102 + F + T + I+ L+N+ I+ + LLR Sbjct: 145 RIKLGFFAEGTHQLTADISEQSCLLVNQEIIEVVAAVEELLNSFKIKSYDWESKQGLLRH 204 Query: 103 KLFQIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKT 158 + + Y T + +VT + + L R+ + + + Sbjct: 205 VMIRRGYATGEIMVVLVTTAENWLTEQELAREIVNRHPRVVSVIRNINTNPGRLILGPQN 264 Query: 159 KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELY 217 ++ +D + +RL L ++ SF Q N + L A +++ Y Sbjct: 265 QVLAGKDSITDRLC----GLKFKISAASFYQVNPRQTEVLYNKALEFANLKGDETVVDAY 320 Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277 CG G + +LARH V+ +EI +V AR N N++ N++ S + Sbjct: 321 CGIGTIASLLARHAGSVIGLEIVPDAVTDARENARLNNLFNIEFFNGSVERL-------- 372 Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSIL 335 L ++ R + +DPPR G + + + P ++Y+SC+P +L RDL IL Sbjct: 373 ----LPEMVARGLRPDLVVLDPPRKGCEKEVLEAILKTQVPRVVYVSCDPATLARDLGIL 428 Query: 336 ST-THTIERLALFDQFPYTRHMECGVLLVRKPS 367 + + + D FP+T H+EC V L RK S Sbjct: 429 AGAGYEPAEVQPVDMFPWTCHVECVVWLKRKHS 461 >gi|289435088|ref|YP_003464960.1| RNA methyltransferase [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289171332|emb|CBH27874.1| RNA methyltransferase [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 453 Score = 292 bits (747), Expect = 6e-77, Method: Composition-based stats. Identities = 76/386 (19%), Positives = 148/386 (38%), Gaps = 38/386 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWHDGDD 57 +L Y QLA K +++ + M N+++ P YR +++ + Sbjct: 84 GCSLQHLSYVGQLAFKRNQVEETMKRIGKLNVEVKETLGMENPWRYRNKSQVPVGFVNGK 143 Query: 58 LYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLFQ 106 L + +++ E + + + S ++ E + +R + + Sbjct: 144 LTAGFYQKRSHEIIDMSTCLIQSEQGDFAVQKTREVLAKYGTEPYDEKTGKGDIRHIMTR 203 Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWREC---AIRLRDALHARKYQIQLIGRANKTKICLD 163 + T Q +VT + + L + Q + ++TK Sbjct: 204 FAHTTGQLMLVLVTTKDRLPFKEEIIRDLTEQLALTSIVQNINPQKTNVIFGDRTKTLWG 263 Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELYCGNGN 222 +D +++ + + + SF Q N + + + AA + +++ YCG G+ Sbjct: 264 KDIIEDTIH----GIRFAISARSFYQVNPLQTEVLYQQAIEAAELTGEETVIDAYCGIGS 319 Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282 SL LA+ V VEI +++ AR N N+++N ++E + Sbjct: 320 ISLCLAKKAKHVYGVEIVDQAIQDARTNAELNNLSNTTFETGKAEEVIPTWYKA------ 373 Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILS-TTH 339 + VDPPR G D+ + + A ++Y+SCNP +L RD+ ILS + Sbjct: 374 ------GIVADVLVVDPPRKGCDEKLLQTILAMKPKKVVYVSCNPGTLARDMKILSDGGY 427 Query: 340 TIERLALFDQFPYTRHMECGVLLVRK 365 ++ D FP T H+E +L K Sbjct: 428 EANQVQPVDMFPMTTHIEAVTVLNLK 453 >gi|110803163|ref|YP_697677.1| RNA methyltransferase [Clostridium perfringens SM101] gi|110683664|gb|ABG87034.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium perfringens SM101] Length = 455 Score = 292 bits (747), Expect = 7e-77, Method: Composition-based stats. Identities = 78/391 (19%), Positives = 151/391 (38%), Gaps = 43/391 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI-----FRSEPIHYRMRAEFHIWHDGD 56 L Y+ QL K DR++ + + I EP YR + + I Sbjct: 81 GCKLQHASYKAQLDFKWDRVKDCVSKIGKLDPSIVKYPLGMEEPWRYRNKVQLPIGLING 140 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLL---INALMIEMMATIRLEP-----------LLRA 102 ++ F ++ + + ++ + + + L E + + P ++R Sbjct: 141 EVKIGFFAPRSHDIIDMESCLIQDEIGDKVVKLTREWIEKFNIRPYNVDGEYDEKGIVRH 200 Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162 + + + T++ +VT + + + + ++ + K IQ I + KT + L Sbjct: 201 IMIRRGFTTNEVMVVLVTNGENLPHKEEFVDLMVK---NIPGIKSVIQNIN-SKKTNVIL 256 Query: 163 DRD----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELY 217 + + ++ ++ + SF Q N + L A ++ + Y Sbjct: 257 GLESKTLWGEDTISDYIGDFRFNISPLSFFQVNPTQTEVLYGKALEYANLTGNEEVFDAY 316 Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277 CG G +L L++ +V VEI +++ A N N V NV+ S+ Sbjct: 317 CGTGTITLFLSQKAKKVYGVEIIPQAIDNAWINAKENKVENVEFFVGESEVV-------- 368 Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSIL 335 + D+ + + VDPPR G D + + I+Y+SC+P +L RDL +L Sbjct: 369 ----IPDLINKGVKADVVVVDPPRKGCDKKLLDAITNIDAKKIVYVSCDPSTLGRDLKVL 424 Query: 336 ST-THTIERLALFDQFPYTRHMECGVLLVRK 365 + + D FP T H+E LL++K Sbjct: 425 EENGYKTLEVQPVDMFPNTAHIENVALLIKK 455 >gi|229159469|ref|ZP_04287487.1| Uncharacterized RNA methyltransferase [Bacillus cereus R309803] gi|228624040|gb|EEK80848.1| Uncharacterized RNA methyltransferase [Bacillus cereus R309803] Length = 465 Score = 292 bits (747), Expect = 7e-77, Method: Composition-based stats. Identities = 78/386 (20%), Positives = 148/386 (38%), Gaps = 40/386 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56 L YE QL K ++R +M + + P YR +A+ I Sbjct: 94 GCQLQHLTYEGQLQAKEKQVRDVMQRIGGLGDVPVHPVLGMKNPWVYRNKAQVPIGEREG 153 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEM-----------MATIRLEPLLRAKLF 105 L + Q T + + ++ + + + L+ ++ R + LR + Sbjct: 154 GLVAGFYRQGTHDIINMESCLIQAEENDTLIQDVKRICEKHGISAYNEERNKGTLRHVMA 213 Query: 106 QIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161 + +T + +T L + + + ++ + + + +KT + Sbjct: 214 RYGQVTGEIMLVFITRTAELPNKQAIIEEITAKFPEVKSIVQNVNPKRTNVIFGDKTTVL 273 Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220 +Y+ + + + + SF Q N + + L A +++ YCG Sbjct: 274 YGSEYIYDFIG----DIKFAISARSFYQVNPEQTKVLYDKTLEYAKLDGNETVIDAYCGI 329 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G+ SL LA+ +V VEI ++E A N A N++ N + ++ +E Sbjct: 330 GSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFGVGEAEVVIPKWYKE---- 385 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST- 337 T+ VDPPR G D+A + + ++Y+SCNP +L RDL +L Sbjct: 386 --------GVIADTMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLARDLKVLEEG 437 Query: 338 THTIERLALFDQFPYTRHMECGVLLV 363 + + + D FP+T H+EC L Sbjct: 438 GYKTQEVQPVDMFPHTTHVECVAWLK 463 >gi|110800984|ref|YP_694814.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium perfringens ATCC 13124] gi|110675631|gb|ABG84618.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium perfringens ATCC 13124] Length = 455 Score = 292 bits (747), Expect = 7e-77, Method: Composition-based stats. Identities = 78/391 (19%), Positives = 150/391 (38%), Gaps = 43/391 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI-----FRSEPIHYRMRAEFHIWHDGD 56 L Y+ QL K DR++ + + I EP YR + + I Sbjct: 81 GCKLQHASYKAQLDFKWDRVKDCVSKIGKLDPSIVKYPLGMEEPWRYRNKVQLPIGLING 140 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLL---INALMIEMMATIRLEP-----------LLRA 102 ++ F ++ + + ++ + + + L E + + P ++R Sbjct: 141 EVKIGFFAPRSHDIIDMESCLIQDEIGDKVVKLTREWIEKFNIRPYNVDGEYDEKGIVRH 200 Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162 + + + T++ +VT + + + ++ + K IQ I + KT + L Sbjct: 201 IMIRRGFTTNEVMVVLVTNGEKLPHKEEFVDLMVK---NIPGIKSVIQNIN-SKKTNVIL 256 Query: 163 DRD----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELY 217 + + ++ ++ + SF Q N + L A ++ + Y Sbjct: 257 GLESKTLWGEDTISDYIGDFRFNISPLSFFQVNPTQTEVLYGKALEYANLTGNEEVFDAY 316 Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277 CG G +L L++ +V VEI +++ A N N V NV+ S+ Sbjct: 317 CGTGTITLFLSQKAKKVYGVEIIPQAIDNAWINAKENKVENVEFFVGESEVV-------- 368 Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSIL 335 + D+ + + VDPPR G D + + I+Y+SC+P +L RDL+IL Sbjct: 369 ----IPDLINKGVKADVVVVDPPRKGCDKKLLDAITNINAKKIVYVSCDPSTLGRDLAIL 424 Query: 336 ST-THTIERLALFDQFPYTRHMECGVLLVRK 365 + + D FP T H+E L++K Sbjct: 425 EENGYKTLEVQPVDMFPNTSHVENVAKLIKK 455 >gi|229077678|ref|ZP_04210308.1| Uncharacterized RNA methyltransferase [Bacillus cereus Rock4-2] gi|228705619|gb|EEL57975.1| Uncharacterized RNA methyltransferase [Bacillus cereus Rock4-2] Length = 454 Score = 292 bits (747), Expect = 7e-77, Method: Composition-based stats. Identities = 79/386 (20%), Positives = 147/386 (38%), Gaps = 40/386 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56 L YE QL K ++R +M + + P YR +A+ I Sbjct: 83 GCQLQHLTYEGQLQAKEKQVRDVMQRIGGLGDVPVHPVLGMKNPWVYRNKAQVPIGEREG 142 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEM-----------MATIRLEPLLRAKLF 105 L + Q T + + ++ + + + L+ E+ R + LR + Sbjct: 143 GLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGITAYNEERNKGTLRHVMA 202 Query: 106 QIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161 + +T + +T L + + ++ + + + +KT + Sbjct: 203 RYGQVTGEIMLVFITRTAELPNKNAIIEEIAAKFPEVKSIVQNVNTKRTNVIFGDKTTVL 262 Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220 +Y+ + + + + SF Q N + + L A +++ YCG Sbjct: 263 YGSEYIYDFIG----DIKFAISARSFYQVNPEQTKVLYDKTLEYAKLNGNETVIDAYCGI 318 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G+ SL LA+ +V VEI ++E A N A N++ N + ++ +E Sbjct: 319 GSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFGVGEAEVVIPKWYKE---- 374 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILST- 337 T+ VDPPR G D+A + + ++Y+SCNP +L RDL +L Sbjct: 375 --------GVIADTMVVDPPRKGCDEALLNTIIDMKPNRVVYVSCNPATLARDLKVLEEG 426 Query: 338 THTIERLALFDQFPYTRHMECGVLLV 363 + + + D FP+T H+EC L Sbjct: 427 GYKTQEVQPVDMFPHTTHVECVAWLK 452 >gi|289422275|ref|ZP_06424129.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Peptostreptococcus anaerobius 653-L] gi|289157326|gb|EFD05937.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Peptostreptococcus anaerobius 653-L] Length = 454 Score = 292 bits (747), Expect = 8e-77, Method: Composition-based stats. Identities = 82/388 (21%), Positives = 159/388 (40%), Gaps = 35/388 (9%) Query: 2 SGTLLID-QYEQQLAEKVDRLRQMMLAFQ-VPNLQ----IFRSEPIHYRMRAEFHIWHDG 55 G + + Y++QL K + +R+ + + +++ I P YR +A+F + + Sbjct: 80 GGCQIQELDYKKQLELKTNIVREDLRRIGGLEDVEVLDAIGMENPFRYRNKAQFPVRLEN 139 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGS-------LLINALMIEMMATIRLEPLLRAKLFQID 108 + + +++ + + +D + +I + E +I E L I Sbjct: 140 GKVKIGFYKKKSHDIIDVDKCVIQDVKNDEIIEIIRDYIAEENISIYDEKSHSGVLRHIV 199 Query: 109 YLTS-QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD-- 165 S Q +V L+ + +L++++ + I + T + L R Sbjct: 200 TKCGFTSGQVMVVLVATEDRFKNIDKLVGKLKESIEGFTSLVVNINKDR-TNVILGRKNI 258 Query: 166 --YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGN 222 + D ++ L + SF Q N + L +GD + ++YCG G+ Sbjct: 259 NKFGDGKIVDNIGDLKFEISPLSFFQVNPVQTEVLYNKALEFADLKEGDRVFDVYCGIGS 318 Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282 SL LA+ + V VEI + +++ A N N ++N++ ++E Sbjct: 319 ISLFLAQKAEFVYGVEIVEDAIKDAMINAKLNGMDNLEFFVGKAEEVV------------ 366 Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILS-TTH 339 +I R + VDPPR G D+ + + ++Y+SCNP +L RDL L + Sbjct: 367 PEIYKQGKRANVVVVDPPRKGCDEKVLDTIVEMEPERVVYVSCNPSTLARDLRYLEDRGY 426 Query: 340 TIERLALFDQFPYTRHMECGVLLVRKPS 367 E++ D F ++ H+EC L+ R S Sbjct: 427 RCEKVQPVDLFAHSVHVECIALIQRVKS 454 >gi|225571369|ref|ZP_03780365.1| hypothetical protein CLOHYLEM_07467 [Clostridium hylemonae DSM 15053] gi|225159845|gb|EEG72464.1| hypothetical protein CLOHYLEM_07467 [Clostridium hylemonae DSM 15053] Length = 475 Score = 291 bits (746), Expect = 8e-77, Method: Composition-based stats. Identities = 86/398 (21%), Positives = 155/398 (38%), Gaps = 45/398 (11%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI---------FRSEPIHYRMRAEFHIW 52 + Y +QL K +++R ++ ++ EP YR +A+F + Sbjct: 83 GCQIQAMSYARQLEYKNEKVRNNLIRLGGVPQELLDEVMEPVCGMEEPYRYRNKAQFPVG 142 Query: 53 HDG-DDLYHIMFDQQTKERMRIDYFMPG---SLLINALMIEMMATIRLEP--------LL 100 D ++ + +T + + G + I ++I M L P L+ Sbjct: 143 TDREGNIITGFYAGRTHQIIPHMDCAIGRAENKEILNIIISFMKEFGLSPYDETSHKGLI 202 Query: 101 RAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRD---ALHARKYQIQLIGRANK 157 R L + Y T + IV D E + ++ + + + Sbjct: 203 RHILIRTGYRTGEIMVCIVINGNGIPHGDTLAERLAEIPGMTSVTYSVNREKTNVIMGRE 262 Query: 158 TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLE 215 + + Y+ + + + Y+ SF Q N + E L G+ GD + + Sbjct: 263 AGLLWGQAYITDYIG----DIKYQISPLSFYQVNPVQTERLYETALE-YAGLHGDETVWD 317 Query: 216 LYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275 LYCG G SL LA+ V VEI ++E A+ N N + N + +++ Sbjct: 318 LYCGIGTISLFLAQKAKHVYGVEIVPQAIEDAKKNAQINGIENARFYVGKAEDVLP---- 373 Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCRDLS 333 + + I VDPPR G +++ + MV+ P I+Y+SC+ +L RD+ Sbjct: 374 -------EKYENDGIHADIIVVDPPRKGCEESVLHTMVKMQPERIVYVSCDSATLARDVK 426 Query: 334 IL-STTHTIERLALFDQFPYTRHMECGVLLVRKPSGWH 370 L + + ++R+ D FP+T H E LL + S H Sbjct: 427 YLRGSGYEVKRVKGVDMFPHTGHTEVVCLLSKLKSSKH 464 >gi|30260591|ref|NP_842968.1| RNA methyltransferase [Bacillus anthracis str. Ames] gi|47525703|ref|YP_017052.1| RNA methyltransferase [Bacillus anthracis str. 'Ames Ancestor'] gi|49183442|ref|YP_026694.1| RNA methyltransferase [Bacillus anthracis str. Sterne] gi|65317856|ref|ZP_00390815.1| COG2265: SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Bacillus anthracis str. A2012] gi|165870726|ref|ZP_02215379.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. A0488] gi|167634708|ref|ZP_02393027.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. A0442] gi|167641292|ref|ZP_02399545.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. A0193] gi|170688986|ref|ZP_02880187.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. A0465] gi|170707136|ref|ZP_02897592.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. A0389] gi|177654527|ref|ZP_02936383.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. A0174] gi|190567598|ref|ZP_03020511.1| RNA methyltransferase, TrmA family [Bacillus anthracis Tsiankovskii-I] gi|227813100|ref|YP_002813109.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. CDC 684] gi|229603797|ref|YP_002865038.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. A0248] gi|254686816|ref|ZP_05150674.1| RNA methyltransferase, TrmA family protein [Bacillus anthracis str. CNEVA-9066] gi|254724890|ref|ZP_05186673.1| RNA methyltransferase, TrmA family protein [Bacillus anthracis str. A1055] gi|254738958|ref|ZP_05196660.1| RNA methyltransferase, TrmA family protein [Bacillus anthracis str. Western North America USA6153] gi|254744546|ref|ZP_05202225.1| RNA methyltransferase, TrmA family protein [Bacillus anthracis str. Kruger B] gi|254756196|ref|ZP_05208225.1| RNA methyltransferase, TrmA family protein [Bacillus anthracis str. Vollum] gi|254762015|ref|ZP_05213864.1| RNA methyltransferase, TrmA family protein [Bacillus anthracis str. Australia 94] gi|50401539|sp|Q81Z48|Y426_BACAN RecName: Full=Uncharacterized RNA methyltransferase BA_0426/GBAA_0426/BAS0414 gi|30253959|gb|AAP24454.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. Ames] gi|47500851|gb|AAT29527.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. 'Ames Ancestor'] gi|49177369|gb|AAT52745.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. Sterne] gi|164713560|gb|EDR19084.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. A0488] gi|167510800|gb|EDR86193.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. A0193] gi|167529782|gb|EDR92530.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. A0442] gi|170127914|gb|EDS96785.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. A0389] gi|170667087|gb|EDT17849.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. A0465] gi|172080639|gb|EDT65722.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. A0174] gi|190561385|gb|EDV15357.1| RNA methyltransferase, TrmA family [Bacillus anthracis Tsiankovskii-I] gi|227004638|gb|ACP14381.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. CDC 684] gi|229268205|gb|ACQ49842.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. A0248] Length = 459 Score = 291 bits (746), Expect = 8e-77, Method: Composition-based stats. Identities = 81/384 (21%), Positives = 157/384 (40%), Gaps = 32/384 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ------IFRSEPIHYRMRAEFHIWHDG 55 L Y++QL +K D + Q + +++ + P HYR +++ + Sbjct: 88 GCQLQHLDYKEQLNQKRDIVVQAFEKYMKNSMEEKIRPTLGMENPWHYRNKSQLQVGRKD 147 Query: 56 DDLYHIMFDQQTKERMRIDYFMP-------GSLLINALMIEMMATIRLEPLLRAKLFQID 108 + + ++ Q + + + I + M + ++ ++ ++ +I E + + I Sbjct: 148 EKVITGLYKQNSHQLIDIAHCMIQHKATNEATKVVRRILEKLNVSIYNEKKQKGLVRTIV 207 Query: 109 YLTS-QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY- 166 T+ Q+ + VTLI + + ++ + A K +Q + + I D+ + Sbjct: 208 TRTAVQTGEVQVTLITTKEELPNKEQFIAEVQKQMPAVKSIMQNVNWRKTSVIFGDKTFK 267 Query: 167 --VDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGNGNF 223 E + L + +F Q N V + E AA +++ YCG G Sbjct: 268 LAGKEVIQETLGDLSFELSARAFFQLNPEQTVVLYNEAKKAAALTGNEKIVDAYCGVGTI 327 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 L LA V +++ ++ AR N + N K ++++ +E Sbjct: 328 GLWLANDAAEVRGMDVIPEAIADARKNAKRHGFTNTKYEAGKAEQWLPKWVKE------- 380 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILSTTHTI 341 +R I VDPPR+G DD + + ++Y+SCNP SL RD+ L ++ + Sbjct: 381 -----GWRPDVIVVDPPRTGCDDKLLETILKVKPKQVVYVSCNPSSLARDVQALMKSYEV 435 Query: 342 ERLALFDQFPYTRHMECGVLLVRK 365 E + D FP+T H+E V L K Sbjct: 436 EYVQPVDMFPHTAHVENVVKLTLK 459 >gi|253578497|ref|ZP_04855769.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251850815|gb|EES78773.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 386 Score = 291 bits (746), Expect = 8e-77, Method: Composition-based stats. Identities = 81/376 (21%), Positives = 149/376 (39%), Gaps = 34/376 (9%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH-IMFDQQT 67 Y++QLA K R+++++ F I +P +YR + D ++ +T Sbjct: 23 PYKEQLAAKQKRMKKLLGKFANVKPIIGMDDPFYYRNKVHAVFDRDKKGNIICGTYEAKT 82 Query: 68 KERMRIDYFMPGSLLINAL-----------MIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116 + + I+ M + + I+ LLR L + + T D+ Sbjct: 83 HKVVPIEECMIEDKISQEIIRTIRDMLKSFRIKTYDEDTGYGLLRHVLVRRGFFT---DE 139 Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD---YVDERLTV 173 +V ++ + + LR + + + + +RD Y + Sbjct: 140 IMVVIVIGSPIFPSKNNFVKALRKKYPQITTVVLNVNDKKTSMVLGERDIVIYGKGYIRD 199 Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNFSLVLARHFD 232 +R SF Q N + + + A G + +++ YCG G LV A+ Sbjct: 200 TLCGCTFRISPQSFYQVNPVQTEILYKTAIEYAGLGRKETVIDAYCGIGTIGLVAAKRAK 259 Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292 V+ VE+ +V AR N N + N + + + EF + M + Sbjct: 260 NVIGVELNPDAVRDARINAKENKITNARFYQGDAGEFMENMAE------------NGEHA 307 Query: 293 KTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCRDLSILST-THTIERLALFDQ 349 +F+DPPR+G D + +++ P I+YISC P++L RDL L+ + + ++ D Sbjct: 308 DVVFMDPPRTGSDKKFMSSVIKLNPSRIVYISCGPETLARDLEYLTKHGYDVRKIQPVDM 367 Query: 350 FPYTRHMECGVLLVRK 365 F +T H E LL +K Sbjct: 368 FSFTDHCENICLLTKK 383 >gi|229188589|ref|ZP_04315628.1| Uncharacterized RNA methyltransferase [Bacillus cereus ATCC 10876] gi|228594778|gb|EEK52558.1| Uncharacterized RNA methyltransferase [Bacillus cereus ATCC 10876] Length = 454 Score = 291 bits (746), Expect = 8e-77, Method: Composition-based stats. Identities = 79/386 (20%), Positives = 148/386 (38%), Gaps = 40/386 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56 L YE QL K ++R +M + + P YR +A+ I Sbjct: 83 GCQLQHLSYEGQLQAKEKQVRDVMQRIGGLGDVPVHPVLGMQNPWVYRNKAQVPIGEREG 142 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEM-----------MATIRLEPLLRAKLF 105 L + Q T + + ++ + + + L+ E+ R + LR + Sbjct: 143 GLVAGFYRQGTHDIINMESCLIQAEENDILIQEVKRICEKHGITAYNEERNKGTLRHVMA 202 Query: 106 QIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161 + +T + +T L + + + ++ + + + +KT + Sbjct: 203 RYGQVTGEIMLVFITRTAELPNKKAIIEEIAAKFPEVKSIVQNVNTKRTNVIFGDKTTVL 262 Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220 +Y+ + + + + SF Q N + + L A +++ YCG Sbjct: 263 YGSEYIYDFIG----DIKFAISARSFYQVNPEQTKVLYDKTLEYAKLNGNETVIDAYCGI 318 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G+ SL LA+ +V VEI ++E A N A N++ N + ++ +E Sbjct: 319 GSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFGVGEAEVVIPKWYKE---- 374 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILST- 337 T+ VDPPR G D+A + + ++Y+SCNP +L RDL +L Sbjct: 375 --------GVIADTMVVDPPRKGCDEALLNTIIDMKPNRVVYVSCNPATLARDLKVLEEG 426 Query: 338 THTIERLALFDQFPYTRHMECGVLLV 363 + + + D FP+T H+EC L Sbjct: 427 GYKTQEVQPVDMFPHTTHVECVAWLK 452 >gi|167767439|ref|ZP_02439492.1| hypothetical protein CLOSS21_01958 [Clostridium sp. SS2/1] gi|167710731|gb|EDS21310.1| hypothetical protein CLOSS21_01958 [Clostridium sp. SS2/1] gi|291558726|emb|CBL37526.1| 23S rRNA m(5)U-1939 methyltransferase [butyrate-producing bacterium SSC/2] Length = 457 Score = 291 bits (746), Expect = 9e-77, Method: Composition-based stats. Identities = 92/393 (23%), Positives = 161/393 (40%), Gaps = 45/393 (11%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-------VPNLQIFRSEPIHYRMRAEFHIWHD 54 TL YE+QL K ++++ + + EP +YR +A+F + +D Sbjct: 81 GCTLQHLAYEKQLEYKFNKVKNCLERIGGLENIEEKMEPILGMEEPFYYRNKAQFPVGYD 140 Query: 55 G-DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLE-----------PLLRA 102 +L + +T + + M + ++++++ ++ L+R Sbjct: 141 KEGNLITGFYAGRTHHIIDCTHCMIQHPVNEQILLKVLDYMKKNNITAYDEKTHKGLVRH 200 Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARK--YQIQLIGRANKTKI 160 + ++ + T + +V + L + L D+L + I + KT Sbjct: 201 IVTRVGFKTGEIMVCLVVNGSKKNLRNLEM-----LIDSLTEVEGMTSICVNINKEKTNR 255 Query: 161 CLD----RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLE 215 L Y + + Y+ SF Q N + E + A + + + Sbjct: 256 ILGSKIEEVYGKPYIYDYIGNVKYQIGPLSFFQVNPTQTKVLYEKAMEYADLKGEETVWD 315 Query: 216 LYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275 LYCG G SL LA+ +V VEI K +++ AR N N +N + ++E R Sbjct: 316 LYCGIGTISLFLAQKAKKVYGVEIVKEAIDDARLNAKMNGFDNAEFFVGKAEEVLP---R 372 Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLS 333 E E N TI VDPPR G D + + A I+Y+SC+P +L RDL Sbjct: 373 EYEKN--------GVYADTIVVDPPRKGCDSKLLETMVKMAPKRIVYVSCDPATLARDLK 424 Query: 334 ILST-THTIERLALFDQFPYTRHMECGVLLVRK 365 +LS + +E++ DQF ++ H+E V L RK Sbjct: 425 VLSEQGYEVEKVCAVDQFSHSSHVETVVRLKRK 457 >gi|323484127|ref|ZP_08089497.1| hypothetical protein HMPREF9474_01248 [Clostridium symbiosum WAL-14163] gi|323402569|gb|EGA94897.1| hypothetical protein HMPREF9474_01248 [Clostridium symbiosum WAL-14163] Length = 575 Score = 291 bits (746), Expect = 9e-77, Method: Composition-based stats. Identities = 88/388 (22%), Positives = 146/388 (37%), Gaps = 42/388 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHD-GDDLYH 60 LL Y+QQLAEK R+ +++ I EP+HYR + HD + Sbjct: 207 GCQLLHLPYKQQLAEKQKRMEELLKGICPVKPIIGMKEPLHYRNKVHAVFGHDRKGNPLS 266 Query: 61 IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-----------LRAKLFQIDY 109 ++ + T + ++ + + ++ + ++ + LR L + + Sbjct: 267 GVYKEGTHILVPVEKCLIEDEKADEIIGTIRGMLKSFKIRTFDEDTGYGFLRHVLVRRGF 326 Query: 110 LTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGR-------ANKTKICL 162 T + +VT + + LR+ IQ I +K + Sbjct: 327 ATGEIMVVLVTA---SPVFPSKNNFVKALREKHPEITTIIQNINNRSTSMVLGDKEHVLY 383 Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNG 221 R Y+++ L L +R SF Q N+ + L A + L+ YCG G Sbjct: 384 GRGYIEDVLC----GLRFRISSKSFYQVNSAQTELLYNKALQLAGLTGKEKALDAYCGIG 439 Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281 L+ +R V+ VE+ +V A N N V N++ + F M Sbjct: 440 TIGLIASRKAGEVIGVELNPDAVRDAVQNAKMNDVKNIQFYCNDAGRFIVNMAE------ 493 Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLS-ILSTT 338 + I +DPPRSG + V ++Y+SC P++L RDL + Sbjct: 494 ------KGEKVDVILMDPPRSGSTKEFIDAVAKMGPERVVYVSCGPETLVRDLRWFMGNG 547 Query: 339 HTIERLALFDQFPYTRHMECGVLLVRKP 366 + D F T H+E VLLVRKP Sbjct: 548 YRAVEAWPVDMFGGTGHVETAVLLVRKP 575 >gi|307265883|ref|ZP_07547432.1| RNA methyltransferase, TrmA family [Thermoanaerobacter wiegelii Rt8.B1] gi|306919052|gb|EFN49277.1| RNA methyltransferase, TrmA family [Thermoanaerobacter wiegelii Rt8.B1] Length = 455 Score = 291 bits (746), Expect = 9e-77, Method: Composition-based stats. Identities = 76/384 (19%), Positives = 146/384 (38%), Gaps = 40/384 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVP----NLQIFRSEPIHYRMRAEFHIWH-DGD 56 +L YE QL K +++ + + I +P YR +A+F + +G Sbjct: 82 GCSLQHLSYEGQLKYKTQKVKDNLERIGKVYTRVHDTIGMEKPQRYRNKAQFPVGMVEGK 141 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLL-----------INALMIEMMATIRLEPLLRAKLF 105 + ++ + + ++ M + I I + + L+R + Sbjct: 142 AAVTGFYAPRSHDIVPVESCMIQHEISDEIARIVRNWIRKYNISVYDEKTGKGLIRHIVT 201 Query: 106 QIDYLTSQSDQAIVTLI----YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161 ++ + T + IV Y + L DA +E L+ + + + + Sbjct: 202 RVAFKTGEVMAVIVINGKDIQYKKQLIDALKEEIRGLKSVVININTKKTNVIMGEENITI 261 Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220 D + + + + + + SF Q N + L A + ++++YCG Sbjct: 262 YGSDNIIDYI----KDIKFEISPLSFFQVNPVQTEVLYGKALEYADLKGEETVIDVYCGI 317 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G SL A+ V +E +VE A+ N N + NV+ + +++ Sbjct: 318 GTISLFAAQKAAFVYGIEAVHQAVEDAKRNAYINGIKNVEFISGDAEKV----------- 366 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILS-T 337 + ++ + + +DPPR G D + + V I+Y+SCNP +L RDL L Sbjct: 367 -MPELADKGVKADVVIMDPPRKGCDTSVLEAVIKMNPKKIVYVSCNPSTLARDLRYLEDN 425 Query: 338 THTIERLALFDQFPYTRHMECGVL 361 + + D FPYT H+E L Sbjct: 426 GYKTMEVQPVDMFPYTHHVESVAL 449 >gi|296330132|ref|ZP_06872614.1| putative RNA methyltransferase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305673376|ref|YP_003865048.1| putative RNA methyltransferase [Bacillus subtilis subsp. spizizenii str. W23] gi|296152721|gb|EFG93588.1| putative RNA methyltransferase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305411620|gb|ADM36739.1| putative RNA methyltransferase [Bacillus subtilis subsp. spizizenii str. W23] Length = 459 Score = 291 bits (746), Expect = 1e-76, Method: Composition-based stats. Identities = 76/388 (19%), Positives = 143/388 (36%), Gaps = 42/388 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-------VPNLQIFRSEPIHYRMRAEFHIWHD 54 L YE QL K +++ ++ + + +P +YR +A+ + Sbjct: 85 GCQLQHMTYEGQLLFKQKQVKDVLERIGKLDLSNVTVHPTLGMEDPWNYRNKAQVPVGER 144 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGS-----------LLINALMIEMMATIRLEPLLRAK 103 L + Q++ + + + + + ++ R + LR Sbjct: 145 EGGLVAGFYQQRSHDIIDMSACLIQQSKNDEAVQAVKDICANYGVKAYNEERHKGWLRHI 204 Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD 163 + + +T + ++ I + + K +Q I NKT + Sbjct: 205 MVRYGVVTG---EMMIVFITKTNDFPHKAKIIEDITAQFPHVKSIVQNINP-NKTNVIFG 260 Query: 164 RD----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYC 218 D + +E + + + SF Q N + + L A + +++ YC Sbjct: 261 NDTNVIWGEEYIYDLIGDVKFAISARSFYQVNPEQTKVLYDKALEYAELKGEETVIDAYC 320 Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278 G G SL LA+ +V VEI ++E A+ N N + N + ++ E Sbjct: 321 GIGTISLFLAKQAKKVYGVEIVPEAIEDAKRNAELNGITNAEFAVGEAETVIPKWYEE-- 378 Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILS 336 T+ VDPPR G D+ + + ++Y+SCNP +L RDL +L Sbjct: 379 ----------GITADTLVVDPPRKGCDETLLRTIVEMKPKRVVYVSCNPGTLARDLRVLE 428 Query: 337 -TTHTIERLALFDQFPYTRHMECGVLLV 363 +T + D FP+T H+EC +L Sbjct: 429 DGGYTTLEVQPVDMFPHTNHVECVAVLK 456 >gi|255657938|ref|ZP_05403347.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Mitsuokella multacida DSM 20544] gi|260850131|gb|EEX70138.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Mitsuokella multacida DSM 20544] Length = 457 Score = 291 bits (745), Expect = 1e-76, Method: Composition-based stats. Identities = 78/386 (20%), Positives = 140/386 (36%), Gaps = 39/386 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56 L Y QL K ++ + + P +YR + +F I Sbjct: 85 GCQLQHLDYMAQLKAKRQQVIDAVTRIGGQKDLFVEPTLGAESPWNYRNKMQFPIGRCKG 144 Query: 57 DLYHIMFDQQTKERMRIDYFMPG----SLLINA---LMIEMMATIRLEPLLRAKLFQIDY 109 F Q T E + + ++NA ++ E+ + E L + Sbjct: 145 KTVIGCFAQGTHEIIDTRDCHIQKEGNNEIVNAVRDIITELRIPVYNEDRHTGVLRHVVG 204 Query: 110 LTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQL-------IGRANKTKICL 162 + + +V ++ +E LR L Q + +T + Sbjct: 205 RVGEKGELMVVIVTATKQLPREKEFVKALRKRLPHVVSIHQNIQTYRNNVIMGRETNLLW 264 Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNG 221 + + +R+ L + SF Q N + L A + +++ YCG G Sbjct: 265 GKPTILDRIGR----LTFHISPRSFFQVNTKQAEVLYNKALEFANLKGEETVIDAYCGTG 320 Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281 +L LA+ V +EI KP++ A+ N N+V N + + + E + + Sbjct: 321 TITLFLAQKAREVYGIEIVKPAILDAQKNARDNNVRNAEFIVGDATEVMPRLYK------ 374 Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILST-T 338 R + VDPPR+G + + I+Y+SCNP SL RDL++L Sbjct: 375 ------QGVRADVVVVDPPRAGCTETVLKTFANMQPDRIVYVSCNPASLARDLAVLEQLG 428 Query: 339 HTIERLALFDQFPYTRHMECGVLLVR 364 + +++ D FP T H+E L+ + Sbjct: 429 YKAKKVQPVDMFPMTSHVETVALIEK 454 >gi|326391815|ref|ZP_08213332.1| RNA methyltransferase, TrmA family [Thermoanaerobacter ethanolicus JW 200] gi|325992144|gb|EGD50619.1| RNA methyltransferase, TrmA family [Thermoanaerobacter ethanolicus JW 200] Length = 455 Score = 291 bits (745), Expect = 1e-76, Method: Composition-based stats. Identities = 76/384 (19%), Positives = 147/384 (38%), Gaps = 40/384 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVP----NLQIFRSEPIHYRMRAEFHIWH-DGD 56 +L YE QL K +++ + + I +P YR +A+F + +G Sbjct: 82 GCSLQHLSYEGQLKYKTQKVKDNLERIGKVYTRVHDTIGMEKPQRYRNKAQFPVGMVEGK 141 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLL-----------INALMIEMMATIRLEPLLRAKLF 105 + ++ + + ++ M + I I + + L+R + Sbjct: 142 AAVTGFYAPRSHDIVPVESCMIQHEISDEIARIVRNWIRKYNISVYDEKTGKGLIRHIVT 201 Query: 106 QIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161 ++ + T + IV + Y + L DA +E L+ + + + + Sbjct: 202 RVAFKTGEVMAVIVINGKDIPYKKQLIDALKEEIRGLKSVVININTKKTNVIMGEENITI 261 Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220 D + + + + + + SF Q N + L A + ++++YCG Sbjct: 262 YGSDNIIDYI----KDIKFEISPLSFFQVNPVQTEVLYGKALEYADLKGEETVIDVYCGI 317 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G SL A+ V +E +VE A+ N N + NV+ + +++ Sbjct: 318 GTISLFAAQKAAFVYGIEAVYQAVEDAKRNAYINGIKNVEFISGDAEKV----------- 366 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILS-T 337 + ++ + + +DPPR G D + + V I+Y+SCNP +L RDL L Sbjct: 367 -MPELADKGVKADVVIMDPPRKGCDTSVLEAVIKMNPKKIVYVSCNPSTLARDLRYLEDN 425 Query: 338 THTIERLALFDQFPYTRHMECGVL 361 + + D FPYT H+E L Sbjct: 426 GYKTMEVQPVDMFPYTSHVESVAL 449 >gi|295400601|ref|ZP_06810579.1| RNA methyltransferase, TrmA family [Geobacillus thermoglucosidasius C56-YS93] gi|294977504|gb|EFG53104.1| RNA methyltransferase, TrmA family [Geobacillus thermoglucosidasius C56-YS93] Length = 458 Score = 291 bits (745), Expect = 1e-76, Method: Composition-based stats. Identities = 85/393 (21%), Positives = 153/393 (38%), Gaps = 49/393 (12%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54 L YE QL EK D + Q + ++ I +P HYR +++F + Sbjct: 86 GCQLQHLDYEAQLREKRDIVIQALERHCRLPVETLEIRPTIGMEDPWHYRNKSQFQVGMK 145 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGSLLINA-----------LMIEMMATIRLEPLLRAK 103 ++ ++ + + + I + N L I + L+R Sbjct: 146 KGEVIAGLYGLNSHQLIDISECLIQHPATNRVTNMVKMILQDLRIPIYNERTQTGLVRTI 205 Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD 163 + ++ + T ++T + ++ L K +Q I KT + Sbjct: 206 VARVGFRTGDVQLVLITAKKEIPRKEL---LIAEIKRRLPEVKSIVQNIN-GQKTSLIFG 261 Query: 164 RD--------YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLL 214 + Y+ E L L + +F Q N V + + V AA ++ Sbjct: 262 EESLLLEGEEYIQEVLG----DLSFELSARAFFQLNPVQTVKLYDEVKKAAALTGTEKVV 317 Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274 + YCG G L LA+ + +++ ++E A+ N + N V ++ Sbjct: 318 DAYCGVGTIGLWLAKDAGEIRGMDVIPEAIEDAKKNAKKHGFANATYVSGKAEALLPKWV 377 Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDL 332 +E ++ I VDPPR+G D+ + + I+Y+SCNP SL RD+ Sbjct: 378 KE------------GWKPDVIVVDPPRTGCDEQLLKTILKVKPQRIVYVSCNPSSLARDI 425 Query: 333 SILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 +LS + ++ + D FP+T H+EC VLLV+K Sbjct: 426 DVLSKFYKVDYIQPVDMFPHTAHVECCVLLVKK 458 >gi|226310296|ref|YP_002770190.1| 23S rRNA (uracil-5-)-methyltransferase [Brevibacillus brevis NBRC 100599] gi|226093244|dbj|BAH41686.1| probable 23S rRNA (uracil-5-)-methyltransferase [Brevibacillus brevis NBRC 100599] Length = 485 Score = 291 bits (745), Expect = 1e-76, Method: Composition-based stats. Identities = 80/391 (20%), Positives = 142/391 (36%), Gaps = 44/391 (11%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ----------VPNLQIFRSEPIHYRMRAEFHI 51 +L YE+QL K +R + + + S+P YR +A+ I Sbjct: 101 GCSLQHLAYEEQLRHKQQIVRDNLRRIGGFQVEGEGAITVHPTLGMSDPWRYRNKAQVPI 160 Query: 52 WHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINA-----------LMIEMMATIRLEPLL 100 + L + +++ + ++ + + + L I +R LL Sbjct: 161 GEENGALVGGFYAEKSHSIIDMNECLIQHQVNDEAVAVVKQAATKLNITAYDEVRHSGLL 220 Query: 101 RAKLFQIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRAN 156 R + ++ T + +VT + L +A + + + Sbjct: 221 RHVVVKVGVKTGEVMVVLVTTEEQIPQRDQLVEAICTQVAGVTSIVQNINPDKTNVIFGK 280 Query: 157 KTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGI-QGDLLE 215 KT D + + + + + SF Q N + L +++ Sbjct: 281 KTVTLWGSDVIYDYIG----PIKFAISARSFYQVNPAQTEVLYNKTLEYAGATGTETVID 336 Query: 216 LYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275 YCG G SL LA+ V VEI ++ A N N V N ++ A + Sbjct: 337 AYCGIGTISLFLAQKSKHVYGVEIVPEAIADANRNAQLNGVENATFEAGPAEVVIPAWKE 396 Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLS 333 R I VDPPR G D+A + + ++Y+SCNP +L RDL Sbjct: 397 ------------KGIRADVIVVDPPRKGCDEALLTTILEMQPERVVYVSCNPSTLARDLK 444 Query: 334 ILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 +L+ + ++ + D FP+T H+E +LVR Sbjct: 445 VLAERYEVKEVQPVDMFPHTGHVESVAVLVR 475 >gi|314934062|ref|ZP_07841425.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus caprae C87] gi|313653173|gb|EFS16932.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus caprae C87] Length = 455 Score = 291 bits (745), Expect = 1e-76, Method: Composition-based stats. Identities = 73/390 (18%), Positives = 142/390 (36%), Gaps = 40/390 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFHIWHDG- 55 L Y+ QL K +++ + + +P YR +++ + D Sbjct: 82 GCQLQHMTYQAQLDMKKEQVVNLFHRKGPFEDTPIQPTVGMEQPWRYRNKSQIPVGKDKE 141 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKL 104 + + Q++ + + +D + +N L I + L+R + Sbjct: 142 NKAITGFYRQRSHDIIDMDSCLIQDEQHQKIMNHVKQWLNELNISIYNEKNQSGLMRHLV 201 Query: 105 FQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQ----LIGRANKTKI 160 + Y T + VT D + I + + K I + ++ Sbjct: 202 VRTGYHTDEMMVIFVTNGKKFKNADVLVQKLISAYPNVTSIKQNINDTHSNVIMGRQSVT 261 Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCG 219 +D + ++L+ + + + SF Q N+ + + + + + +L+ YCG Sbjct: 262 LYGKDKIVDQLS----EVTFNISDQSFYQINSAQTEKLYQQAIDYAQLTGEEIVLDTYCG 317 Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279 G L +A V VE+ +++ A N N +NN +++ + Sbjct: 318 IGTIGLYMAPQAKHVYGVEVVPSAIKDAEENATKNQLNNTTFECGKAEDVILEWKA---- 373 Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILST 337 R + VDPPR G D+ V + I+YISCNP + RD +L+ Sbjct: 374 --------QGIRPDVVMVDPPRKGCDETFVKTLLKLNPKRIVYISCNPSTQQRDAQLLAN 425 Query: 338 THTIERLALFDQFPYTRHMECGVLLVRKPS 367 + + + D FP T H+E L RK + Sbjct: 426 NYHLVEITPVDMFPQTTHIETVALFERKKN 455 >gi|319654336|ref|ZP_08008424.1| YefA protein [Bacillus sp. 2_A_57_CT2] gi|317394036|gb|EFV74786.1| YefA protein [Bacillus sp. 2_A_57_CT2] Length = 460 Score = 291 bits (745), Expect = 1e-76, Method: Composition-based stats. Identities = 75/388 (19%), Positives = 142/388 (36%), Gaps = 40/388 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFHIWHDGD 56 L YE QL K ++R ++ + +P YR +A+ I Sbjct: 86 GCQLQHLSYEGQLLAKEKQVRDVLERIGKLEGVKVHPVLGMKDPWRYRNKAQVPIGEQEG 145 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKLF 105 L + Q+T + + + + + ++ ++ + LR + Sbjct: 146 GLIGGFYQQRTHQIIDMKECLIQQEKNDEVVQKVKEICGRYGVRAYDEGRHKGELRHVMA 205 Query: 106 QIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161 + +T + +VT L + + + + ++ +H + + + T++ Sbjct: 206 RYGLVTGEVMIVLVTRTNELPHKQRIVEEIASSIEGVKSIVHNVNSRKTNVIMGDVTRVL 265 Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220 +E + + + SF Q N + + L A + +++ YCG Sbjct: 266 WG----EEVIYDFIGDIKFAISARSFYQVNPEQTKVLYDKALEYANLSGEEQVIDAYCGI 321 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G SL LA+ V VEI ++E A+ N N + N ++E + Sbjct: 322 GTISLFLAQKAKEVFGVEIVPEAIEDAKRNADLNGMTNASFAVGKAEEVIPDWYK----- 376 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILS-T 337 + + VDPPR G D+A + + + ++Y+SCNP +L RDL IL Sbjct: 377 -------KGNTAEVLVVDPPRKGCDEALLKTILSMKPKKVVYVSCNPGTLARDLRILEDG 429 Query: 338 THTIERLALFDQFPYTRHMECGVLLVRK 365 + + D FP T H E L K Sbjct: 430 GYRTIEVQPVDMFPQTMHCEAVAGLEWK 457 >gi|160878319|ref|YP_001557287.1| RNA methyltransferase [Clostridium phytofermentans ISDg] gi|160426985|gb|ABX40548.1| RNA methyltransferase, TrmA family [Clostridium phytofermentans ISDg] Length = 468 Score = 291 bits (744), Expect = 1e-76, Method: Composition-based stats. Identities = 84/391 (21%), Positives = 150/391 (38%), Gaps = 35/391 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIW-HDG 55 + YE+QL K +++ + + P +YR +A+F + Sbjct: 85 GCQIQQLSYEEQLRYKQNKVLNCLKRIGGIENPPMEPIVGMENPYYYRNKAQFPVGKRTD 144 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLE-----------PLLRAKL 104 ++ + +T + G L+ + ++ E L+R L Sbjct: 145 GEVVIGFYAGRTHSIIDTAKCHIGDESTEPLIACIRNFLKQENISIYDEESHQGLVRHIL 204 Query: 105 FQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHA-RKYQIQLIGRANKTKICLD 163 ++ + T + +V D + + + R I L KT + L Sbjct: 205 LRVGFTTKELMICVVINGKELPASDKLIKQILACPNLPKDFRVTSICLNKNTKKTNVILG 264 Query: 164 RD----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYC 218 + Y +T + Y+ SF Q N + E L T + + +LYC Sbjct: 265 EEIIPLYGPTYITDYIGDIKYQISPLSFYQVNPVQTKKLYELALDYTDLTGNELVWDLYC 324 Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278 G G SL LA+ V VEI ++E A+ N N +NN + +++E + Sbjct: 325 GIGTISLFLAQKAKMVYGVEIIPQAIEDAKSNAKLNDINNAEFFVGAAEEVLPKQYQ--- 381 Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSIL- 335 + I VDPPR G D++ + + A I+Y+SC+P +L RDL L Sbjct: 382 ------LSGGKIYADVIVVDPPRKGCDESLLETIVAMEPKRIVYVSCDPATLARDLKYLI 435 Query: 336 STTHTIERLALFDQFPYTRHMECGVLLVRKP 366 + ++++ DQFP++ H+E LL R+ Sbjct: 436 EHGYDLKKVRPVDQFPHSVHVESVTLLTRRN 466 >gi|57237672|ref|YP_178920.1| tRNA (uracil-5-)-methyltransferase [Campylobacter jejuni RM1221] gi|81557510|sp|Q5HUW5|TRMA_CAMJR RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|57166476|gb|AAW35255.1| tRNA (uracil-5-)-methyltransferase [Campylobacter jejuni RM1221] gi|315058281|gb|ADT72610.1| tRNA (uracil-5-)-methyltransferase [Campylobacter jejuni subsp. jejuni S3] Length = 357 Score = 291 bits (744), Expect = 1e-76, Method: Composition-based stats. Identities = 133/352 (37%), Positives = 205/352 (58%), Gaps = 8/352 (2%) Query: 14 LAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRI 73 L EK +++ F + ++F S+ HYR RAE +H+ D L++ MFD + K++ I Sbjct: 12 LDEKHSFIKKYFKEFYTKDFKLFASKDKHYRTRAELSFYHENDTLFYAMFDPKNKKKYII 71 Query: 74 DYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRE 133 Y I M +++ +R + L+ KLF +++LT++ + + VTL+YH+ ++D + Sbjct: 72 KYLDFADEKICTFMPKLLEYLRQDNKLKEKLFGVEFLTTKQELS-VTLLYHKNIED-IKS 129 Query: 134 CAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAG 193 L + LH I LI R+ K+ + + + L + GR + Y + F QPN Sbjct: 130 NLENLSNILH-----INLIARSKGKKLIFKTENLRQTLNIQGRKIFYEFNNDCFIQPNTT 184 Query: 194 INVHMLEWVLA-ATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIA 252 IN M+ WV + DLLELYCG GNF+L LA F +VLA EI+K ++ A N Sbjct: 185 INEKMITWVCEILNTQKRMDLLELYCGYGNFTLALAPFFFKVLATEISKSNINFALKNCE 244 Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312 N+ N+ R+SS+E + A+++EREF RLKDI + + F + VDPPR+GLD + + ++ Sbjct: 245 LNNTTNIHFARLSSEELSLAIKKEREFFRLKDIRLDDFNFSHVLVDPPRAGLDKSVIDLI 304 Query: 313 QAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 + Y +I+YISCNP +L +L LS TH +E ALFDQF T H+ECGV L + Sbjct: 305 KKYENIIYISCNPITLKENLKELSLTHRVEEFALFDQFVNTPHLECGVFLSK 356 >gi|299820611|ref|ZP_07052501.1| 23S rRNA (uracil-5-)-methyltransferase [Listeria grayi DSM 20601] gi|299818106|gb|EFI85340.1| 23S rRNA (uracil-5-)-methyltransferase [Listeria grayi DSM 20601] Length = 460 Score = 291 bits (744), Expect = 2e-76, Method: Composition-based stats. Identities = 80/383 (20%), Positives = 154/383 (40%), Gaps = 35/383 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWHDGDD 57 +L Y+ QLA K ++ Q M ++++ P YR +++ + + Sbjct: 90 GCSLQHLSYDGQLAFKQNQGAQNMKRIGKLDVEVKPTLGMEMPFRYRNKSQVPVGYVNGK 149 Query: 58 LYHIMFDQQTKERMRIDYFMP-------GSLLINALMIEMMATIRLEPLLRAKLFQIDYL 110 + + +++ + + +D + ++ L+ + E R + I Sbjct: 150 IQAGFYQKRSHDIIDMDTCLIHNRTGDDAVQIVRRLLEKYAIMPYQEETGRGDIRHIMTR 209 Query: 111 TSQ-SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD---- 165 + S + ++ L+ R E ++ + +Q I A KT + + Sbjct: 210 YGKTSGELMIVLVTTRKKFPNLTELVADIQKEVPNIASIVQNINAA-KTNVIMGETTRTL 268 Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNF 223 + E +T + + SF Q N + + L A G+ GD +++ YCG G+ Sbjct: 269 WGKEMITDTIHGIHFAISAKSFYQVNPEQTEVLYQEALDA-AGLTGDEIVIDAYCGIGSI 327 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 SL LA++ V VEI ++ A+ N N ++NV ++E R Sbjct: 328 SLCLAKNAKHVYGVEIVPQAIIDAKANAQLNQLDNVTFETGKAEEVIPNWYR-------- 379 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STTHT 340 + + VDPPR G D+ + + ++Y+SCNP +L RD+ IL + +T Sbjct: 380 ----SGIKADVLVVDPPRKGCDEKLLETIIDMKPKKVVYVSCNPATLARDMQILTAGGYT 435 Query: 341 IERLALFDQFPYTRHMECGVLLV 363 + + D FP T H+E +L Sbjct: 436 AKTVQPVDMFPMTNHIEAVTVLE 458 >gi|169343089|ref|ZP_02864116.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium perfringens C str. JGS1495] gi|169298999|gb|EDS81073.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium perfringens C str. JGS1495] Length = 455 Score = 291 bits (744), Expect = 2e-76, Method: Composition-based stats. Identities = 76/391 (19%), Positives = 150/391 (38%), Gaps = 43/391 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI-----FRSEPIHYRMRAEFHIWHDGD 56 L Y+ QL K +R++ + + I P YR + + I Sbjct: 81 GCKLQHASYKAQLDFKWERVKDCVSKIGKLDPSIVKYPLGMENPWRYRNKVQLPIGLING 140 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLL---INALMIEMMATIRLEP-----------LLRA 102 ++ F ++ + + ++ + + + L E + + P ++R Sbjct: 141 EVKIGFFAPRSHDIIDMESCLIQDEIGDKVVKLTREWIEKFNIRPYNVDGEYDEKGIVRH 200 Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162 + + + T++ +VT + + + + ++ + K IQ I + KT + L Sbjct: 201 IMIRRGFTTNEVMVVLVTNGENLPHKEEFVDLMVK---NIPGIKSVIQNIN-SKKTNVIL 256 Query: 163 DRD----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELY 217 + + ++ ++ + SF Q N + L A ++ + Y Sbjct: 257 GLESKTLWGEDTISDYIGDFRFNISPLSFFQVNPTQTEVLYGKALEYANLTGNEEVFDAY 316 Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277 CG G +L L++ +V VEI +++ A N N V NV+ S+ Sbjct: 317 CGTGTITLFLSQKAKKVYGVEIIPQAIDNAWINAKENKVENVEFFVGESEVV-------- 368 Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSIL 335 + D+ + + VDPPR G D + + I+Y+SC+P +L RDL +L Sbjct: 369 ----IPDLINKGVKADVVVVDPPRKGCDKKLLDAITNIDAKKIVYVSCDPSTLGRDLKVL 424 Query: 336 ST-THTIERLALFDQFPYTRHMECGVLLVRK 365 + + D FP T H+E LL++K Sbjct: 425 EENGYKTLEVQPVDMFPNTAHIENVALLIKK 455 >gi|313632848|gb|EFR99799.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria seeligeri FSL N1-067] Length = 453 Score = 291 bits (744), Expect = 2e-76, Method: Composition-based stats. Identities = 76/386 (19%), Positives = 147/386 (38%), Gaps = 38/386 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWHDGDD 57 +L Y QLA K +++ + M N+++ P YR +++ + Sbjct: 84 GCSLQHLSYVGQLAFKRNQVEETMKRIGKLNVEVKETLGMENPWRYRNKSQVPVGFVNGK 143 Query: 58 LYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLFQ 106 L + +++ E + + + S ++ E + +R + + Sbjct: 144 LTAGFYQKRSHEIIDMSTCLIQSEQGDFAVQKTREVLAKYGTEPYDEKTGKGDIRHIMTR 203 Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWREC---AIRLRDALHARKYQIQLIGRANKTKICLD 163 + T Q +VT + + L + Q + ++TK Sbjct: 204 FAHTTGQLMLVLVTTKDRLPFKEEIIRDLTEQLALTSIVQNINPQKTNVIFGDRTKTLWG 263 Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELYCGNGN 222 +D +++ + + + SF Q N + + + AA + +++ YCG G+ Sbjct: 264 KDIIEDTIH----GIRFAISARSFYQVNPLQTEVLYQQAIEAAELTGEETVIDAYCGIGS 319 Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282 SL LA+ V VEI +++ AR N N+++N ++E + Sbjct: 320 ISLCLAKKAKHVYGVEIVDQAIQDARANAELNNLSNTTFETGKAEEVIPTWYKA------ 373 Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILS-TTH 339 + VDPPR G D+ + + A ++Y+SCNP +L RD+ ILS + Sbjct: 374 ------GIVADVLVVDPPRKGCDEKLLQTILAMKPKKVVYVSCNPGTLARDMKILSDGGY 427 Query: 340 TIERLALFDQFPYTRHMECGVLLVRK 365 + D FP T H+E +L K Sbjct: 428 EANLVQPVDMFPMTTHIEAVTVLNLK 453 >gi|305432144|ref|ZP_07401310.1| tRNA (uracil-5-)-methyltransferase [Campylobacter coli JV20] gi|304444809|gb|EFM37456.1| tRNA (uracil-5-)-methyltransferase [Campylobacter coli JV20] Length = 362 Score = 291 bits (744), Expect = 2e-76, Method: Composition-based stats. Identities = 131/351 (37%), Positives = 209/351 (59%), Gaps = 10/351 (2%) Query: 14 LAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRI 73 L EK +++ F N ++F S+ HYR RAE +HD D++Y+ MF + K+++ I Sbjct: 12 LEEKASFIKEFFKDFYQGNFELFSSKDKHYRTRAELSFYHDKDEIYYAMF--ENKKKIII 69 Query: 74 DYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRE 133 + I A M +++ IR L+ KLF +++L ++++ + TL+YH+ ++ + + Sbjct: 70 ESLEFADEKITAFMPKLLKQIRNNTNLKEKLFGVEFLATKNELS-TTLLYHKNIELIYND 128 Query: 134 CAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAG 193 + + LI R+ K+ ++ + + L + GR + Y + F QPN Sbjct: 129 LNN------LSLELDANLIARSKGKKLVFKKENLRQELDIQGRKIFYEFNNDCFIQPNTS 182 Query: 194 INVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIA 252 IN M+ WV + DLLELYCG GNF+L LA F+ VLA EI+K ++ A N Sbjct: 183 INEKMITWVCENLKTQERKDLLELYCGYGNFTLALAIFFNNVLATEISKSNINFALLNCK 242 Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312 N+++N+ R+SS+E +QA+++EREF RLKDID+ ++ F I VDPPR+GLD + + ++ Sbjct: 243 INNISNIHFTRLSSEELSQALKKEREFFRLKDIDLDNFNFSHILVDPPRAGLDKSVIDLI 302 Query: 313 QAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363 + Y +I+YISCNP SL +L L+ TH +E+ ALFDQF T H+ECG+LL Sbjct: 303 KNYENIIYISCNPISLKENLKELALTHKVEKFALFDQFVNTPHLECGILLK 353 >gi|304316267|ref|YP_003851412.1| RNA methyltransferase, TrmA family [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302777769|gb|ADL68328.1| RNA methyltransferase, TrmA family [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 452 Score = 291 bits (744), Expect = 2e-76, Method: Composition-based stats. Identities = 86/387 (22%), Positives = 152/387 (39%), Gaps = 41/387 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIF----RSEPIHYRMRAEFHIWHDGDD 57 TL Y+ QL K + + N ++ P++YR +AE+ + + + Sbjct: 82 GCTLQHLSYKGQLEFKKQVVDDSLSRIGKINTIVYDTIGMDNPLYYRDKAEYPVGIEDGN 141 Query: 58 LYHIMFDQQTKERMRIDYFMPGS-----------LLINALMIEMMATIRLEPLLRAKLFQ 106 + + ++ + ID M S N I + LLR + + Sbjct: 142 IKSGFYASKSHNIIAIDSCMIQSDYSIEAMKTVREWANNYKISIFDEKSGNGLLRYIITK 201 Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAW----RECAIRLRDALHARKYQIQLIGRANKTKICL 162 + + T + +V D ++ L+ + + ++ + Sbjct: 202 VGFSTKEVMVILVINGIDIPYKDELINTLKKNIKELKSVVLNINKSRSRLVMGSENIVIY 261 Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGN 220 Y+ + + + SF Q N + E L ++GD ++++YCG Sbjct: 262 GDGYITDYIGDK----KFEISPLSFFQVNPIQTKVLYEKALE-YADLKGDEIVIDVYCGI 316 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G S+ A++ V +E+ +VE A+ N A N +NN + ++ + + +E Sbjct: 317 GTISIFFAKYVKHVYGIEVVSDAVEDAKRNAAINGINNADFIAGKAEHVMKRLYKE---- 372 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCRDLSILS-T 337 I +DPPR GLD V V+ P I+YISCNP +L RDL I Sbjct: 373 --------GLMPDIIILDPPRRGLDKDVVDECVKMNPQKIIYISCNPTTLARDLRIFEDN 424 Query: 338 THTIERLALFDQFPYTRHMECGVLLVR 364 + E++ D FPYT H+EC VL+ R Sbjct: 425 GYKTEKVQPVDMFPYTYHVECVVLMSR 451 >gi|167039842|ref|YP_001662827.1| RNA methyltransferase [Thermoanaerobacter sp. X514] gi|166854082|gb|ABY92491.1| RNA methyltransferase, TrmA family [Thermoanaerobacter sp. X514] Length = 454 Score = 291 bits (744), Expect = 2e-76, Method: Composition-based stats. Identities = 74/387 (19%), Positives = 146/387 (37%), Gaps = 39/387 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLA----FQVPNLQIFRSEPIHYRMRAEFHIWHDGDD 57 + YE QL K +++ + + + I EP YR +A+F + + Sbjct: 83 GCSFQHLSYEGQLKYKTQKVKDNLERIGKVYTKVHEIIGMKEPQRYRNKAQFPVGMLDGE 142 Query: 58 LYHIMFDQQTKERMRIDYFMPGSLL-----------INALMIEMMATIRLEPLLRAKLFQ 106 + + ++ + + I+ M + I + + + L+R + + Sbjct: 143 VVTGFYAPRSHDIVPIESCMIQDEVSDYIARTIRNWIKKYNVSVYDEKAGKGLIRHIVTR 202 Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD- 165 + + T + +V H + + L+ ++ K + I T + + D Sbjct: 203 VGFKTGEVMVILVVNGKHIPYKE---QLIDALKKEINGLKSVVLNINTKR-TNVIMGEDN 258 Query: 166 ---YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNG 221 Y + + + + + SF Q N + L A ++++YCG G Sbjct: 259 ITIYGSDNIIDYIKDIKFEISPLSFFQVNPVQTEVLYGKALEYADLKGDETVIDVYCGIG 318 Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281 SL A+ V +E +VE A+ N N + NV+ + +++ Sbjct: 319 TISLFAAQKAFFVYGIEAVHQAVEDAKRNAYINGIKNVEFISGQAEKV------------ 366 Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STT 338 + ++ + + +DPPR G D + + I+Y+SCNP +L RDL L Sbjct: 367 MPELVDKGVKADVVIIDPPRKGCDIPVLEAIVNMNPQKIVYVSCNPSTLARDLRYLDDKG 426 Query: 339 HTIERLALFDQFPYTRHMECGVLLVRK 365 + + D FPYT H+E L+ K Sbjct: 427 YKTMEVQPVDMFPYTHHVESVCLITNK 453 >gi|300915331|ref|ZP_07132645.1| RNA methyltransferase, TrmA family [Thermoanaerobacter sp. X561] gi|307724834|ref|YP_003904585.1| TrmA family RNA methyltransferase [Thermoanaerobacter sp. X513] gi|300888607|gb|EFK83755.1| RNA methyltransferase, TrmA family [Thermoanaerobacter sp. X561] gi|307581895|gb|ADN55294.1| RNA methyltransferase, TrmA family [Thermoanaerobacter sp. X513] Length = 453 Score = 291 bits (744), Expect = 2e-76, Method: Composition-based stats. Identities = 74/387 (19%), Positives = 146/387 (37%), Gaps = 39/387 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLA----FQVPNLQIFRSEPIHYRMRAEFHIWHDGDD 57 + YE QL K +++ + + + I EP YR +A+F + + Sbjct: 82 GCSFQHLSYEGQLKYKTQKVKDNLERIGKVYTKVHEIIGMKEPQRYRNKAQFPVGMLDGE 141 Query: 58 LYHIMFDQQTKERMRIDYFMPGSLL-----------INALMIEMMATIRLEPLLRAKLFQ 106 + + ++ + + I+ M + I + + + L+R + + Sbjct: 142 VVTGFYAPRSHDIVPIESCMIQDEVSDYIARTIRNWIKKYNVSVYDEKAGKGLIRHIVTR 201 Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD- 165 + + T + +V H + + L+ ++ K + I T + + D Sbjct: 202 VGFKTGEVMVILVVNGKHIPYKE---QLIDALKKEINGLKSVVLNINTKR-TNVIMGEDN 257 Query: 166 ---YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNG 221 Y + + + + + SF Q N + L A ++++YCG G Sbjct: 258 ITIYGSDNIIDYIKDIKFEISPLSFFQVNPVQTEVLYGKALEYADLKGDETVIDVYCGIG 317 Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281 SL A+ V +E +VE A+ N N + NV+ + +++ Sbjct: 318 TISLFAAQKAFFVYGIEAVHQAVEDAKRNAYINGIKNVEFISGQAEKV------------ 365 Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STT 338 + ++ + + +DPPR G D + + I+Y+SCNP +L RDL L Sbjct: 366 MPELVDKGVKADVVIIDPPRKGCDIPVLEAIVNMNPQKIVYVSCNPSTLARDLRYLDDKG 425 Query: 339 HTIERLALFDQFPYTRHMECGVLLVRK 365 + + D FPYT H+E L+ K Sbjct: 426 YKTMEVQPVDMFPYTHHVESVCLITNK 452 >gi|217964101|ref|YP_002349779.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria monocytogenes HCC23] gi|290893407|ref|ZP_06556392.1| RNA methyltransferase [Listeria monocytogenes FSL J2-071] gi|217333371|gb|ACK39165.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria monocytogenes HCC23] gi|290557058|gb|EFD90587.1| RNA methyltransferase [Listeria monocytogenes FSL J2-071] gi|307571331|emb|CAR84510.1| RNA methyltransferase, TrmA/RumA/YefA-family [Listeria monocytogenes L99] Length = 453 Score = 291 bits (744), Expect = 2e-76, Method: Composition-based stats. Identities = 72/383 (18%), Positives = 146/383 (38%), Gaps = 38/383 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWHDGDD 57 +L Y+ QLA K +++ + M N+ + P YR +++ + Sbjct: 84 GCSLQHLSYDGQLAFKRNQVEETMKRIGKLNVDVPETLGMENPWRYRNKSQVPVGFVNGK 143 Query: 58 LYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLFQ 106 L + +++ + + + + ++ E + +R + + Sbjct: 144 LTAGFYQKRSHAIIDMSTCLIHNEQGDFAVQKTREILAKYGTEPYDEKTGKGDIRHIMTR 203 Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWREC---AIRLRDALHARKYQIQLIGRANKTKICLD 163 + T Q +VT + + + L + + ++TK Sbjct: 204 FAHTTGQLMLVLVTTKERMPFKNEIVQDLVEQLELTSIVQNINPHKTNVIFGDRTKTLWG 263 Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELYCGNGN 222 +D +++ + + + SF Q N + + + AA + +++ YCG G+ Sbjct: 264 KDIIEDTIH----GIRFAISARSFYQVNPLQTEVLYQQAIDAAELTGEETVIDAYCGIGS 319 Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282 SL LA+ V VEI +++ AR N N + N ++E A + Sbjct: 320 ISLCLAKKAKHVYGVEIVDQAIQDARANAELNELTNTTFETGKAEEVIPAWYKA------ 373 Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILS-TTH 339 + VDPPR G D+ + + A ++Y+SCNP +L RD+ IL+ + Sbjct: 374 ------GIEADVLVVDPPRKGCDEKLLETILAMKPKKVVYVSCNPGTLARDMKILTDGGY 427 Query: 340 TIERLALFDQFPYTRHMECGVLL 362 +++ D FP T H+E +L Sbjct: 428 VAKKVQPVDMFPMTTHIEAVTVL 450 >gi|284802195|ref|YP_003414060.1| hypothetical protein LM5578_1951 [Listeria monocytogenes 08-5578] gi|284995337|ref|YP_003417105.1| hypothetical protein LM5923_1902 [Listeria monocytogenes 08-5923] gi|284057757|gb|ADB68698.1| hypothetical protein LM5578_1951 [Listeria monocytogenes 08-5578] gi|284060804|gb|ADB71743.1| hypothetical protein LM5923_1902 [Listeria monocytogenes 08-5923] Length = 453 Score = 291 bits (744), Expect = 2e-76, Method: Composition-based stats. Identities = 71/383 (18%), Positives = 145/383 (37%), Gaps = 38/383 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWHDGDD 57 +L Y+ QL K +++ + M N+++ P YR +++ + Sbjct: 84 GCSLQHLSYDGQLEFKRNQVEETMKRIGKLNVEVPETLGMENPWRYRNKSQVPVGFVNGK 143 Query: 58 LYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLFQ 106 L + +++ + + + + ++ E + +R + + Sbjct: 144 LTAGFYQKRSHAIIDMSTCLIHNEQGDFAVQKTREILAKYGTEPYDEQTGKGDIRHIMTR 203 Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWREC---AIRLRDALHARKYQIQLIGRANKTKICLD 163 + T Q +VT + + L + + ++TK Sbjct: 204 FAHTTGQLMIVLVTTKERMPFKEEIVRDLVEQLELTSIVQNINPHKTNVIFGDRTKTLWG 263 Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELYCGNGN 222 +D +++ + + + SF Q N + + + AA + +++ YCG G+ Sbjct: 264 KDIIEDTIH----GIRFAISARSFYQVNPLQTEVLYQQAIDAAELTGEETVIDAYCGIGS 319 Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282 SL LA+ V VEI +++ AR N N + N ++E A + Sbjct: 320 ISLCLAKKAKHVYGVEIVDQAIQDARANAELNELANTTFETGKAEEVIPAWYKA------ 373 Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILS-TTH 339 + VDPPR G D+ + + A ++Y+SCNP +L RD+ IL+ + Sbjct: 374 ------GIVADVLVVDPPRKGCDEKLLETILAMKPKKVVYVSCNPGTLARDMKILTDGGY 427 Query: 340 TIERLALFDQFPYTRHMECGVLL 362 +++ D FP T H+E +L Sbjct: 428 VAKKVQPVDMFPMTTHIEAVTVL 450 >gi|172058513|ref|YP_001814973.1| RNA methyltransferase [Exiguobacterium sibiricum 255-15] gi|171991034|gb|ACB61956.1| RNA methyltransferase, TrmA family [Exiguobacterium sibiricum 255-15] Length = 454 Score = 290 bits (743), Expect = 2e-76, Method: Composition-based stats. Identities = 77/389 (19%), Positives = 154/389 (39%), Gaps = 39/389 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWHDGDD 57 L Y+ +L K +R+R + + +P YR +A+ + + Sbjct: 82 GCQLQHLSYDAELKFKHNRVRDAFARLAGLEIPVHETMGMEDPWGYRNKAQVPVAFQSNK 141 Query: 58 LYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLFQ 106 L + +++ + +DY + + ++ L + + ++R + + Sbjct: 142 LMAGFYQKRSHRIIDMDYCLIQNKENDDAIQAVRKVLADLKVPAYDEKKNSGVIRHIMAR 201 Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD- 165 Y T++ +VT + + L A + L+ + IQ ++T + L + Sbjct: 202 HGYHTNELMIVLVTKV--KQLRGADKIVEGILKAVPN--VTSIQQNINPDETNVILGKRN 257 Query: 166 ---YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNG 221 + + L Y +SF Q N + L + + +++ YCG G Sbjct: 258 IVLHGPSVIRDQIAGLTYEISPHSFFQVNPLQTEKLYGKALEYAQLTGDEIVVDAYCGIG 317 Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281 + SL LA+ V +E+ +++ AR N AN ++NV +++ A+ + Sbjct: 318 SISLSLAQKAKHVYGIEMVPQAIDDARRNAKANGIDNVSFEYGTAETVMPALVK------ 371 Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST-T 338 + I VDPPR G D+ + A I+Y+SCN + RD +L+ Sbjct: 372 ------GGIKPDVIVVDPPRKGCDEEFLRAAAEVAPKRIVYVSCNASTQARDAKLLAELG 425 Query: 339 HTIERLALFDQFPYTRHMECGVLLVRKPS 367 + + + D FP+T H+E L VR+ + Sbjct: 426 YKLMEVTPVDMFPHTTHVESVALFVREEN 454 >gi|327535927|gb|AEA94761.1| 23S rRNA (uracil-5-)-methyltransferase [Enterococcus faecalis OG1RF] Length = 456 Score = 290 bits (743), Expect = 2e-76, Method: Composition-based stats. Identities = 80/389 (20%), Positives = 148/389 (38%), Gaps = 41/389 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54 L Y+ QL K D L+Q + F+ N Q I P +YR +A+F + Sbjct: 84 GCQLQHLAYKAQLDFKKDLLKQALNKFKPVNYQNYELRKTIGMENPWNYRNKAQFQLRQI 143 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAK 103 + ++ + + + ID + L+N + + + + R Sbjct: 144 DGQVEAGLYQADSHQLVPIDNCLVQQPATTKVMNTLVDLLNDFQLPIYDERKNSGIFRTL 203 Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD 163 + ++ Q+ + V I + + + L +Q + KT + + Sbjct: 204 MVRVGI---QTGEVQVVFITQSKKFPQKEKMVRAINEQLPEVVSIMQNVQN-KKTSLVMG 259 Query: 164 RD----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYC 218 D + E + +++ +F Q N + E + A +++ YC Sbjct: 260 DDTLHLWGKESIEEHINDVVFDLSPRAFFQLNPEQTEVLYNEGIKALDLQPNETVVDAYC 319 Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278 G G L LA+ +V ++ +++ AR+N V N ++++ +E Sbjct: 320 GVGTIGLSLAKQAHQVRGMDTIPAAIDDARFNAKRLGVTNTHYAVGTAEDLLPKWFKE-- 377 Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILS 336 ++ I VDPPR+GLD + + P ++YISCN +L RDL L+ Sbjct: 378 ----------GFKPDAIVVDPPRTGLDRKLLTALLKQPPKKMVYISCNVSTLARDLVQLA 427 Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVRK 365 + ++ L D FP T E V L RK Sbjct: 428 KVYQVDYLQSVDMFPQTARCEVVVKLTRK 456 >gi|20808229|ref|NP_623400.1| SAM-dependent methyltransferase related to tRNA (uracil-5-)-methyltransferase [Thermoanaerobacter tengcongensis MB4] gi|50401766|sp|Q8R918|Y1812_THETN RecName: Full=Uncharacterized RNA methyltransferase TTE1812 gi|20516825|gb|AAM25004.1| SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Thermoanaerobacter tengcongensis MB4] Length = 452 Score = 290 bits (743), Expect = 2e-76, Method: Composition-based stats. Identities = 78/386 (20%), Positives = 151/386 (39%), Gaps = 39/386 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLA----FQVPNLQIFRSEPIHYRMRAEFHIWHDGDD 57 +L Y+ QL K +++ + + + I P++YR + +F + G + Sbjct: 82 GCSLQHLSYKGQLEYKTQKVKDNLERIGKIYTKVHYAIGMENPLNYRNKGQFVVGEIGRE 141 Query: 58 LYHIMFDQQTKERMRIDYFMPGSLL-----------INALMIEMMATIRLEPLLRAKLFQ 106 + + E + +D + L +N I + + + L+R + + Sbjct: 142 KITGFYSFHSHEIVPVDNCLIQHPLSNKVVSVVKEWLNECDISVYDRKKGKGLIRHVVAK 201 Query: 107 IDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162 + + T + IV + L +A +E L+ + + + NK + Sbjct: 202 VAFKTGEVMAIIVINGEDIPCKEELIEALKEKVPGLKSVILNINTRRTKMILGNKNIVIY 261 Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNG 221 ++ +++ + + L + SF Q N + + + ++ +++Y G G Sbjct: 262 GKNTIEDFI----KDLRFEISPLSFFQVNPIQTEILYDKAIEYAGLTGKEVVIDVYSGIG 317 Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281 SL A+ V +E K +VE A N N V NVK + ++ + +E Sbjct: 318 TISLFAAKKASFVYGIESVKEAVEDAEKNAQVNGVKNVKFIWGKAEREIAKLYKE----- 372 Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILS-TT 338 + + + VDPPR G D + + I+Y+SCNP +L RDL L Sbjct: 373 -------GVKAEVVIVDPPRDGCDKEVIRAIVGINPKRIVYVSCNPSTLARDLRYLEDAG 425 Query: 339 HTIERLALFDQFPYTRHMECGVLLVR 364 + + D FPYT H+E L+ R Sbjct: 426 YRTVEVQPVDMFPYTYHVESVALVER 451 >gi|302390099|ref|YP_003825920.1| 23S rRNA m(5)U-1939 methyltransferase [Thermosediminibacter oceani DSM 16646] gi|302200727|gb|ADL08297.1| 23S rRNA m(5)U-1939 methyltransferase [Thermosediminibacter oceani DSM 16646] Length = 450 Score = 290 bits (743), Expect = 2e-76, Method: Composition-based stats. Identities = 81/387 (20%), Positives = 155/387 (40%), Gaps = 41/387 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIF----RSEPIHYRMRAEFHIWHDGDD 57 +L Y+ QL K ++R + +F +P YR +A++ + Sbjct: 80 GCSLQHLSYKGQLEFKTQKVRDSLERIGRIYTTVFDTIGMEDPWKYRNKAQYPVGKKDYR 139 Query: 58 LYHIMFDQQTKERMRIDYFMPGSLL-----------INALMIEMMATIRLEPLLRAKLFQ 106 + +++ + + I+ + L + + + I + L+R + + Sbjct: 140 PALGFYMKRSHDLVPIEGCLIQHELSWRAAEVVRDWMEKFRVSIYDEINHKGLIRHVVTR 199 Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD- 165 I +++ + +V L+ + RE L + K + L KT + + + Sbjct: 200 IG---AKTGEVMVVLVINGREVPHLRELLGALEKNVEGLK-SVYLNVNTKKTNVIMGDEN 255 Query: 166 ---YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGN 220 Y + + + + NSF Q N + V +L + G+ G+ +++ YCG Sbjct: 256 ILVYGEPHIIDFIGEIKFTLSPNSFFQVNP-VQVEVLYKKVMEYAGLTGEETVIDAYCGI 314 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G +L LA V +E+ +V AR N N + NV+ + +++E + Sbjct: 315 GTITLFLAGKARMVYGIEVVPQAVMDARNNALLNGIENVEFIEGAAEEVMPQLVE----- 369 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILS-T 337 R I +DPPR G D+ + P ++Y+SCNP +L RDL L Sbjct: 370 -------RGIRADVIVMDPPRRGCDEKLLDAAVKMNPPRMVYVSCNPATLARDLRYLEDR 422 Query: 338 THTIERLALFDQFPYTRHMECGVLLVR 364 + E + D FP+T H+EC L+ + Sbjct: 423 GYRTELVQPVDMFPFTHHVECVALIKK 449 >gi|253681766|ref|ZP_04862563.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum D str. 1873] gi|253561478|gb|EES90930.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum D str. 1873] Length = 494 Score = 290 bits (743), Expect = 2e-76, Method: Composition-based stats. Identities = 77/402 (19%), Positives = 156/402 (38%), Gaps = 53/402 (13%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI------------------FRSEPIHY 43 ++ Y QL K +R++ + + I P Y Sbjct: 109 GCSIQHFNYNAQLEFKRNRVKDCLERIGKLKVTIDNEQENSNKKSTILHDTLGMENPYRY 168 Query: 44 RMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLL---INALMIEMMATIRLEP-- 98 R + + + + ++ + ++ + + ++ + + +L + M ++P Sbjct: 169 RNKVQLPVGEENGEIKIGFYAPRSHDIIDMNICYIQDEVGDKVVSLAKQWMQKYNIKPYN 228 Query: 99 ------LLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLI 152 ++R + + + T++ IVT +E + ++ +Q I Sbjct: 229 EEKNTGIVRHVMIRRGFNTNEIMIVIVTRTNELP---HKKELIELILKNINGVTSIVQNI 285 Query: 153 GRANKTKICLDRD----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKG 208 KT + L + Y + ++ + SF Q N + L Sbjct: 286 NT-KKTNVVLGLNNITLYGKDYISDYIGEFKFNISPLSFFQVNPIQTEVLYNKALEYAAL 344 Query: 209 IQGDLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267 +++ + YCG G SL L+++ +V VEI + +++ A+ N N+V+NV+ + S+ Sbjct: 345 TGNEVVFDAYCGTGTISLFLSKNAKKVYGVEIVEDAIKNAKINAKENNVDNVEFIVGKSE 404 Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNP 325 E + + + + VDPPR G D A + + I+Y+SC+P Sbjct: 405 EVIPNLIK------------QGIKADVVVVDPPRKGCDKALLDAIGNMRPDRIVYVSCDP 452 Query: 326 DSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVRKP 366 +L RDL+IL + + + D FP T H+E VLL +K Sbjct: 453 GTLARDLAILDELGYETKEVQPVDMFPQTGHVENVVLLTKKN 494 >gi|331268633|ref|YP_004395125.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum BKT015925] gi|329125183|gb|AEB75128.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum BKT015925] Length = 495 Score = 290 bits (743), Expect = 2e-76, Method: Composition-based stats. Identities = 78/400 (19%), Positives = 154/400 (38%), Gaps = 55/400 (13%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ--------------------IFRSEPI 41 ++ Y+ QL K +R++ + + + P Sbjct: 109 GCSIQHFNYDAQLEFKKNRVKDCLERIGKLQVITKEEKNISYLDNKLAILHDTLGMQNPY 168 Query: 42 HYRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLL---INALMIEMMATIRLEP 98 YR + + + + ++ + ++ + +D + + +L E M ++P Sbjct: 169 RYRNKVQLPVGEENGEIKIGFYAPRSHNIIDMDICYIQDEVGDTVVSLTREWMEKYNIKP 228 Query: 99 --------LLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQ 150 ++R + + + T++ IVT + E ++ D + + I Sbjct: 229 YNEEKNVGIVRHIMIRRGFNTNEVMVVIVTRTNELPHKEELIELILKNIDGVTSIVQNIN 288 Query: 151 LIGRANKTKICLDRD----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAAT 206 + KT + L + Y E ++ + SF Q N + L Sbjct: 289 ----SKKTNVVLGLNNITLYGKEYISDYIGEFKFNISPLSFFQVNPIQTEVLYNKALEYA 344 Query: 207 KGIQGDLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265 +++ + YCG G SL L+++ +V VEI + ++E A+ N N+VNN + + Sbjct: 345 ALTGNEVVFDAYCGTGTISLFLSKNAKKVYGVEIVEDAIENAKINAKENNVNNAEFIVGK 404 Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISC 323 S+E + + + + VDPPR G D + + + I+Y+SC Sbjct: 405 SEEVIPNLIK------------QGIKADVVVVDPPRKGCDKSLLDAIGNMKPDRIVYVSC 452 Query: 324 NPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLL 362 +P +L RDL+IL + + + D FP T H+E VLL Sbjct: 453 DPGTLARDLAILDELGYETKEVQPVDMFPQTGHVENVVLL 492 >gi|167747772|ref|ZP_02419899.1| hypothetical protein ANACAC_02493 [Anaerostipes caccae DSM 14662] gi|167653134|gb|EDR97263.1| hypothetical protein ANACAC_02493 [Anaerostipes caccae DSM 14662] Length = 459 Score = 290 bits (743), Expect = 2e-76, Method: Composition-based stats. Identities = 91/393 (23%), Positives = 157/393 (39%), Gaps = 45/393 (11%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-------VPNLQIFRSEPIHYRMRAEFHIWH- 53 TL YE+QL K ++++ + EP +YR +A+F + Sbjct: 81 GCTLQHLSYEKQLEYKFNKVKNCLERIGGIENAGSFMEPIYGMDEPYYYRNKAQFPVGRN 140 Query: 54 DGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLE-----------PLLRA 102 L + +T + + + ++ +++ + L+R Sbjct: 141 KAGKLITGFYAGRTHSIIDCTHCSIQHPVNEEILKKVLDYMERNHVEPYDEKNHRGLVRH 200 Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRD------ALHARKYQIQLIGRAN 156 + ++ ++T + +V + L E L++ + + Sbjct: 201 IMTRVGFVTGEIMVCLVVNGRKKEL-PNLSELVESLKEVEGMTSICVNSNRERTNRIMGS 259 Query: 157 KTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLE 215 K + Y+ + + + Y+ SF Q N + E L + + + Sbjct: 260 KVEEVYGPAYIYDYIG----NVKYQIGPLSFFQVNPRQTKVLYEKALEYAGLCGDETVWD 315 Query: 216 LYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275 LYCG G SL LA+ +V VEI K ++E AR N N ++NVK ++E R Sbjct: 316 LYCGIGTISLFLAQKAKQVYGVEIVKEAIEDARLNARMNRMDNVKFFVGKAEEVLP---R 372 Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCRDLS 333 E E N I VDPPR G D A + MV+ P I+Y+SC+P +L RDL Sbjct: 373 EYEKN--------GVYADVIVVDPPRKGCDKALLDTMVKMGPERIVYVSCDPGTLARDLK 424 Query: 334 IL-STTHTIERLALFDQFPYTRHMECGVLLVRK 365 +L + + ++A+ DQF +T H+E LL RK Sbjct: 425 VLGGEGYEVRKVAVVDQFGHTGHVETVALLKRK 457 >gi|257416880|ref|ZP_05593874.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis AR01/DG] gi|257158708|gb|EEU88668.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis ARO1/DG] Length = 456 Score = 290 bits (743), Expect = 2e-76, Method: Composition-based stats. Identities = 80/389 (20%), Positives = 148/389 (38%), Gaps = 41/389 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54 L Y+ QL K D L+Q + F+ N Q I P +YR +A+F + Sbjct: 84 GCQLQHLAYKAQLDFKKDLLKQALNKFKPVNYQNYELRKTIGMENPWNYRNKAQFQLRQI 143 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAK 103 + ++ + + + ID + L+N + + + + R Sbjct: 144 DGQVEAGLYQADSHQLVPIDNCLVQQPATTKVMNTLVDLLNDFQLPIYDERKNSGIFRTL 203 Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD 163 + ++ Q+ + V I + + + L +Q + KT + + Sbjct: 204 MVRVGI---QTGEVQVVFITQSKKFPQKEKMVRAINEQLPEVVSIMQNVQN-KKTSLVMG 259 Query: 164 RD----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYC 218 D + E + +++ +F Q N + E + A +++ YC Sbjct: 260 DDTLHLWGKESIEEHINDVVFDLSPRAFFQLNPEQTEVLYNEGIKALDLQPNETVVDAYC 319 Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278 G G L LA+ +V ++ +++ AR+N V N ++++ +E Sbjct: 320 GVGTIGLSLAKQAHQVRGMDTIPAAIDDARFNAKRLGVTNTHYAVGTAEDLLPKWFKE-- 377 Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILS 336 ++ I VDPPR+GLD + + P ++YISCN +L RDL L+ Sbjct: 378 ----------GFKPDAIVVDPPRTGLDRKLLTALLKQPPKKMVYISCNVSTLARDLVQLA 427 Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVRK 365 + ++ L D FP T E V L RK Sbjct: 428 KVYQVDYLQSVDMFPQTARCEVVVKLTRK 456 >gi|226310579|ref|YP_002770473.1| 23S rRNA (uracil-5-)-methyltransferase [Brevibacillus brevis NBRC 100599] gi|226093527|dbj|BAH41969.1| probable 23S rRNA (uracil-5-)-methyltransferase [Brevibacillus brevis NBRC 100599] Length = 460 Score = 290 bits (743), Expect = 2e-76, Method: Composition-based stats. Identities = 80/387 (20%), Positives = 143/387 (36%), Gaps = 39/387 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56 +L Y QLA K + + + + + I P YR +A+F + + Sbjct: 90 GCSLQHMDYAAQLASKQEIVIESLRKYARLNQPPVAPTIGMDNPWSYRNKAQFQVGKEKG 149 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLF 105 L ++ + + + ++ +I L I + + ++R + Sbjct: 150 KLIAGLYQTGSHKLVNLEGCQVQHEATTKIVQTAKQIIEELGIPIYDEKKRTGVIRTIVA 209 Query: 106 QIDYLTSQSDQAIVTLIYH----RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161 ++ + T ++ +VT + L R L Q + +KT Sbjct: 210 RVAFATGETQLTLVTATPEIPRVKELLLELRTRLPELVGIAQNVNNQKTSLVFGDKTVSL 269 Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGN 220 + + E+L L + +F Q N + + V A + +L+LYCG Sbjct: 270 WGKASIAEKLG----ELSFDLSARAFFQLNPEQTQKLYKQVKTAAGLTGKELVLDLYCGT 325 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G L LA + V +E+ +VE A N N N ++ + Sbjct: 326 GTIGLWLAPYAREVRGIELIPEAVEDANRNAERNQAANASFHVGRAEVLMPKWAK----- 380 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTT 338 R + VDPPR+GLDDA + + I+Y+SCNP +L +D+ L Sbjct: 381 -------QGTRPDVVVVDPPRTGLDDALIRSLLDVLPKKIVYVSCNPSTLAKDVGKLMQR 433 Query: 339 HTIERLALFDQFPYTRHMECGVLLVRK 365 + + + D FP+T H+E LL K Sbjct: 434 YELVSVQPVDMFPHTAHVESVTLLTLK 460 >gi|153811014|ref|ZP_01963682.1| hypothetical protein RUMOBE_01405 [Ruminococcus obeum ATCC 29174] gi|149832902|gb|EDM87985.1| hypothetical protein RUMOBE_01405 [Ruminococcus obeum ATCC 29174] Length = 456 Score = 290 bits (743), Expect = 2e-76, Method: Composition-based stats. Identities = 86/391 (21%), Positives = 144/391 (36%), Gaps = 45/391 (11%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDG- 55 L YE+Q K +LR + I EP HYR +A+F + + Sbjct: 81 GCQLQAVSYEEQKVFKEKKLRGHLERIGGFTNLPMEPLIGMDEPYHYRNKAQFPVGRNKE 140 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKL 104 + + +T + G + I + L+R Sbjct: 141 GKIVTGFYAGRTHAIIENRDCALGIPENKDVLDRVIAHMEKYNIAPYDEATGKGLVRHIF 200 Query: 105 FQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQ------LIGRANKT 158 + + T + +V LI + RE +L + + + +K Sbjct: 201 VRYGFFTG---ELMVCLIINGQDLPHQRELVEKLCEIPGMTSISLNMNKKRSNVILGDKV 257 Query: 159 KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELY 217 K DY+ +++ + Y SF Q N + L A + + +LY Sbjct: 258 KTIWGEDYITDKIG----DISYEISPLSFFQVNPKQTWKLYSKALEYADLHGEETVWDLY 313 Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277 CG G SL LA+ V VEI ++E AR N N + NV+ ++E A Sbjct: 314 CGIGTISLFLAQKAKFVRGVEIVPAAIEDARRNAKLNDIGNVEFFVGKAEEVLPA----- 368 Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSIL 335 + + + I VDPPR G D+ + + ++Y+SC+ +L RDL L Sbjct: 369 ------EYEKNGVYADVIVVDPPRKGCDEMLLKTILKMQPKRVVYVSCDSATLARDLRFL 422 Query: 336 S-TTHTIERLALFDQFPYTRHMECGVLLVRK 365 + ++++ DQFP T H+E LL +K Sbjct: 423 CDNGYELKKVCGVDQFPQTVHVETVCLLSKK 453 >gi|330839061|ref|YP_004413641.1| RNA methyltransferase, TrmA family [Selenomonas sputigena ATCC 35185] gi|329746825|gb|AEC00182.1| RNA methyltransferase, TrmA family [Selenomonas sputigena ATCC 35185] Length = 458 Score = 290 bits (743), Expect = 2e-76, Method: Composition-based stats. Identities = 86/390 (22%), Positives = 149/390 (38%), Gaps = 47/390 (12%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-VPNLQIFR----SEPIHYRMRAEFHIWHDGD 56 L Y QL K ++ + + +++ EP YR + +F + Sbjct: 85 GCQLQHLSYGGQLHWKRQQVVDAVERIGGLSGIEVLPVLGAKEPWLYRNKMQFPVGKKRG 144 Query: 57 DLYHIMFDQQTKERMRIDYFMPG-----------SLLINALMIEMMATIRLEPLLRAKLF 105 F + + + + ++ L I + R +LR + Sbjct: 145 KTVIGCFAKGSHDIIDTRDCRIQKDGNNTIVNVMREIVERLHIPVYDEDRHTGVLRHIVG 204 Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGR-------ANKT 158 +I ++ +A+V L+ +E LR+ + K Q I +T Sbjct: 205 RI----GENGEAMVVLVTATKDLPKAKEITRLLRERVPNLKSVQQNIQTYRNNVILGRET 260 Query: 159 KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELY 217 K+ + + +R+ L + SF Q N + E L A + +++ Y Sbjct: 261 KLLWGKPTIPDRIGR----LRFSISARSFFQVNTEQAAVLYEKALEYADLSGKETVIDAY 316 Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277 CG G +L LA+ RV +EI KP++E A+ N NH+ N + + E + E Sbjct: 317 CGTGTITLFLAQKAHRVYGIEIVKPAIEDAKKNARDNHIKNAAFLVGDATELMPRLCHEN 376 Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSIL 335 R I VDPPR+G + + I+Y+SCNP +L RDL+IL Sbjct: 377 ------------IRPHVIVVDPPRAGCTETVLKTFAGMRPDRIVYVSCNPATLARDLAIL 424 Query: 336 ST-THTIERLALFDQFPYTRHMECGVLLVR 364 + ++ + D FP T H+E L+R Sbjct: 425 AKLGYSAREIQPVDMFPQTSHVEAVTKLIR 454 >gi|228963568|ref|ZP_04124721.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis serovar sotto str. T04001] gi|228796086|gb|EEM43541.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis serovar sotto str. T04001] Length = 459 Score = 290 bits (743), Expect = 2e-76, Method: Composition-based stats. Identities = 79/384 (20%), Positives = 157/384 (40%), Gaps = 32/384 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ------IFRSEPIHYRMRAEFHIWHDG 55 L Y++QL +K D + Q + +++ + P HYR +++ + Sbjct: 88 GCQLQHLDYKEQLNQKRDIVVQAFEKYMKNSMEEKIRPTLGMENPWHYRNKSQLQVGRKD 147 Query: 56 DDLYHIMFDQQTKERMRIDYFMP-------GSLLINALMIEMMATIRLEPLLRAKLFQID 108 + + ++ Q + + + I + M + ++ ++ ++ +I E + + I Sbjct: 148 EKVITGLYKQNSHQLIDIAHCMIQHKATNEATKVVRRILEKLNVSIYNEKKQKGLVRTIV 207 Query: 109 YLTS-QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY- 166 T+ Q+ + VTLI + + ++ + A K +Q + + I D+ + Sbjct: 208 TRTAVQTGEVQVTLITTKEELPNKEQFVAEVQKQMPAVKSIMQNVNWRKTSVIFGDKTFK 267 Query: 167 --VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELYCGNGNF 223 E + L + +F Q N + + + AA +++ YCG G Sbjct: 268 LAGKEVIQETLGDLSFELSARAFFQLNPEQTIVLYDEAKKAAALTGDEKIVDAYCGVGTI 327 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 L LA V +++ ++ AR N + N K ++++ +E Sbjct: 328 GLWLANDAAEVRGMDVIPEAIADARKNAKRHGFTNTKYEAGKAEQWLPKWVKE------- 380 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILSTTHTI 341 +R I VDPPR+G DD + + ++Y+SCNP SL RD+ L ++ + Sbjct: 381 -----GWRPDVIVVDPPRTGCDDKLLETILKVKPKQVVYVSCNPSSLARDVQALMKSYEV 435 Query: 342 ERLALFDQFPYTRHMECGVLLVRK 365 E + D FP+T H+E V L K Sbjct: 436 EYVQPVDMFPHTAHVENVVRLKLK 459 >gi|210613367|ref|ZP_03289687.1| hypothetical protein CLONEX_01894 [Clostridium nexile DSM 1787] gi|210151209|gb|EEA82217.1| hypothetical protein CLONEX_01894 [Clostridium nexile DSM 1787] Length = 464 Score = 290 bits (743), Expect = 2e-76, Method: Composition-based stats. Identities = 89/395 (22%), Positives = 150/395 (37%), Gaps = 39/395 (9%) Query: 2 SGTLLID-QYEQQLAEKVDRLRQMMLAFQ---------VPNLQIFRSEPIHYRMRAEFHI 51 G + + YE+QL K ++R + V EP +YR +A+F Sbjct: 78 GGCQIQELSYEKQLEFKEKKVRGNLERIGGFAPEELDEVMEPICGMEEPFYYRNKAQFPF 137 Query: 52 WHDGDD-LYHIMFDQQTKERMRIDYFMPGSLL-----------INALMIEMMATIRLEPL 99 D + + +T + + G +N I E L Sbjct: 138 GTDKQGHIVTGFYAGRTHQIIPNTECALGVKQNREILEMIVDFMNIHHITTYDETTGEGL 197 Query: 100 LRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRD---ALHARKYQIQLIGRAN 156 LR L + + T + ++ + + + + + + Sbjct: 198 LRHVLIRYGFRTGEIMVCLIINGDNFPKSEKLVDNLREIPGMTSITLNVNRERTNVILGR 257 Query: 157 KTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LL 214 + K+ + Y+ + + + Y+ SF Q N ++ L G+ G+ + Sbjct: 258 EIKVLWGQAYITDYIG----NVKYQISPLSFYQVNPVQTENLYGQALE-YAGLHGNETVW 312 Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274 +LYCG G SL LA+ +V VEI ++E A+ N A N + N + S+E Sbjct: 313 DLYCGIGTISLFLAQKAKQVYGVEIIPQAIEDAKRNAALNGIENAQFFVGKSEEVLPQYY 372 Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCRDL 332 N K+ I VDPPR G D+ + M+Q P I+Y+SC+ +L RDL Sbjct: 373 E----NYAKEHGGEKAYADVIVVDPPRKGCDETLLETMIQMQPERIVYVSCDSATLARDL 428 Query: 333 SILST-THTIERLALFDQFPYTRHMECGVLLVRKP 366 L + ++R+ D F T H+E VLL RK Sbjct: 429 KYLCENGYELKRVRAVDMFANTVHVETVVLLQRKN 463 >gi|315162126|gb|EFU06143.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX0645] gi|315168692|gb|EFU12709.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX1341] Length = 456 Score = 290 bits (742), Expect = 2e-76, Method: Composition-based stats. Identities = 80/389 (20%), Positives = 148/389 (38%), Gaps = 41/389 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54 L Y+ QL K D L+Q + F+ N Q I P +YR +A+F + Sbjct: 84 GCQLQHLAYKAQLDFKKDLLKQALNKFKPANYQNYELRKTIGMENPWNYRNKAQFQLRQI 143 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAK 103 + ++ + + + ID + L+N + + + + R Sbjct: 144 DGQVEAGLYQADSHQLVPIDNCLVQQPATTKVMNTLVDLLNDFQLPIYDERKNSGIFRTL 203 Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD 163 + ++ Q+ + V I + + + L +Q + KT + + Sbjct: 204 MVRVGI---QTGEVQVVFITQSKKFPQKEKMVRAINEQLPEVVSIMQNVQN-KKTSLVMG 259 Query: 164 RD----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYC 218 D + E + +++ +F Q N + E + A +++ YC Sbjct: 260 DDTLHLWGKESIEEHINDVVFDLSPRAFFQLNPEQTEVLYNEGIKALDLQPNETVVDAYC 319 Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278 G G L LA+ +V ++ +++ AR+N V N ++++ +E Sbjct: 320 GVGTIGLSLAKQAHQVRGMDTIPAAIDDARFNAKRLGVTNTHYAVGTAEDLLPKWFKE-- 377 Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILS 336 ++ I VDPPR+GLD + + P ++YISCN +L RDL L+ Sbjct: 378 ----------GFKPDAIVVDPPRTGLDRKLLTALLKQPPKKMVYISCNVSTLARDLVQLA 427 Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVRK 365 + ++ L D FP T E V L RK Sbjct: 428 KVYQVDYLQSVDMFPQTARCEVVVKLTRK 456 >gi|303229651|ref|ZP_07316439.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Veillonella atypica ACS-134-V-Col7a] gi|302515776|gb|EFL57730.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Veillonella atypica ACS-134-V-Col7a] Length = 576 Score = 290 bits (742), Expect = 2e-76, Method: Composition-based stats. Identities = 77/390 (19%), Positives = 149/390 (38%), Gaps = 36/390 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56 L YE QL+ K +++ ++ + EP YR + + + Sbjct: 114 GCQLQHITYEGQLSLKTQKVKDVIERIGHQNPDFVKPALGPKEPWAYRNKMQMPVGGARG 173 Query: 57 DLYHIMFDQQTKERMRIDYFMP---GSLLINALMIEMMATIRLEPL----LRAKLFQIDY 109 D+ + + + ++ G+ I + ++ + +EP + L + Sbjct: 174 DIQMGFYAMGSHDIVQGTNCPIQDDGNNTIAQVCYDIAKELDVEPYDEHTGKGVLRHVIG 233 Query: 110 LTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD---- 165 QS +V L+ E + + + + + + +T + L Sbjct: 234 RIGQSG-WMVILVTATDYLPQHEEWVKNITNRIPQVETIVHNVN-GKRTNVILGAKNNIL 291 Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNF 223 Y D +T + L + +SF Q N + + LA ++GD +++ YCG G Sbjct: 292 YGDGTITDHIKDLRFTLSPHSFFQVNPEQTTVLYDQALA-YADLKGDEIVIDAYCGTGTI 350 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 SL LA V+ +EI +P++ AR N N +N + + + + Sbjct: 351 SLFLAHKAKHVIGIEIVEPAIINARENARRNGYDNTEFIVADAA------------VEMP 398 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILST-THT 340 + R I DP R+G + + + I+Y+SCNP ++ RD+ IL+ + Sbjct: 399 KLYKAGVRPDVIVFDPIRAGCKEEVLTSAASMEPNRIVYVSCNPATMARDIEILTHYGYE 458 Query: 341 IERLALFDQFPYTRHMECGVLLVRKPSGWH 370 ++ + D FP T H+E LL + H Sbjct: 459 LKEVQPVDMFPMTAHVETVALLSKLDVDKH 488 >gi|228919254|ref|ZP_04082624.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228840361|gb|EEM85632.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 454 Score = 290 bits (742), Expect = 2e-76, Method: Composition-based stats. Identities = 78/386 (20%), Positives = 146/386 (37%), Gaps = 40/386 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56 L YE QL K ++R +M + + P YR +A+ I Sbjct: 83 GCQLQHLTYEGQLQAKEKQVRDVMQRIGGLGDVPVHPVLGMKNPWVYRNKAQVPIGEREG 142 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEM-----------MATIRLEPLLRAKLF 105 L + Q T + + ++ + + + L+ E+ R + LR + Sbjct: 143 GLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGITAYNEERNKGTLRHVMA 202 Query: 106 QIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161 + +T + +T L + + ++ + + + +KT + Sbjct: 203 RYGQVTGEIMLVFITRTAELPNKNAIIEEIAAKFPEVKSIVQNVNTKRTNVIFGDKTTVL 262 Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220 +Y+ + + + + SF Q N + + L A +++ YCG Sbjct: 263 YGSEYIYDFIG----DIKFAISARSFYQVNPEQTKVLYDKTLEYAKLNGNETVIDAYCGI 318 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G+ SL LA+ +V VEI ++E A N N++ N + ++ +E Sbjct: 319 GSISLFLAQKAKKVYGVEIVPEAIEDANRNATLNNMTNAEFGVGEAEVVIPKWYKE---- 374 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILST- 337 T+ VDPPR G D+A + + ++Y+SCNP +L RDL +L Sbjct: 375 --------GVIADTMVVDPPRKGCDEALLNTIIDMKPNRVVYVSCNPATLARDLKVLEEG 426 Query: 338 THTIERLALFDQFPYTRHMECGVLLV 363 + + + D FP+T H+EC L Sbjct: 427 GYKTQEVQPVDMFPHTTHVECVAWLK 452 >gi|260887170|ref|ZP_05898433.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Selenomonas sputigena ATCC 35185] gi|260863232|gb|EEX77732.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Selenomonas sputigena ATCC 35185] Length = 466 Score = 290 bits (742), Expect = 2e-76, Method: Composition-based stats. Identities = 86/390 (22%), Positives = 149/390 (38%), Gaps = 47/390 (12%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-VPNLQIFR----SEPIHYRMRAEFHIWHDGD 56 L Y QL K ++ + + +++ EP YR + +F + Sbjct: 93 GCQLQHLSYGGQLHWKRQQVVDAVERIGGLSGIEVLPVLGAKEPWLYRNKMQFPVGKKRG 152 Query: 57 DLYHIMFDQQTKERMRIDYFMPG-----------SLLINALMIEMMATIRLEPLLRAKLF 105 F + + + + ++ L I + R +LR + Sbjct: 153 KTVIGCFAKGSHDIIDTRDCRIQKDGNNTIVNVMREIVERLHIPVYDEDRHTGVLRHIVG 212 Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGR-------ANKT 158 +I ++ +A+V L+ +E LR+ + K Q I +T Sbjct: 213 RI----GENGEAMVVLVTATKDLPKAKEITRLLRERVPNLKSVQQNIQTYRNNVILGRET 268 Query: 159 KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELY 217 K+ + + +R+ L + SF Q N + E L A + +++ Y Sbjct: 269 KLLWGKPTIPDRIGR----LRFSISARSFFQVNTEQAAVLYEKALEYADLSGKETVIDAY 324 Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277 CG G +L LA+ RV +EI KP++E A+ N NH+ N + + E + E Sbjct: 325 CGTGTITLFLAQKAHRVYGIEIVKPAIEDAKKNARDNHIKNAAFLVGDATELMPRLCHEN 384 Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSIL 335 R I VDPPR+G + + I+Y+SCNP +L RDL+IL Sbjct: 385 ------------IRPHVIVVDPPRAGCTETVLKTFAGMRPDRIVYVSCNPATLARDLAIL 432 Query: 336 ST-THTIERLALFDQFPYTRHMECGVLLVR 364 + ++ + D FP T H+E L+R Sbjct: 433 AKLGYSAREIQPVDMFPQTSHVEAVTKLIR 462 >gi|257087679|ref|ZP_05582040.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis D6] gi|256995709|gb|EEU83011.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis D6] gi|315025522|gb|EFT37454.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX2137] Length = 456 Score = 290 bits (742), Expect = 2e-76, Method: Composition-based stats. Identities = 81/389 (20%), Positives = 149/389 (38%), Gaps = 41/389 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54 L Y+ QL K D L+Q + F+ N Q I P +YR +A+F + Sbjct: 84 GCQLQHLAYKAQLDFKKDLLKQALNKFKPANYQNYELRKTIGMENPWNYRNKAQFQLRQI 143 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAK 103 + ++ + + + ID + L+N + + + + R Sbjct: 144 DGQVEAGLYQADSHQLVPIDNCLVQQPATTKVMNTLVDLLNDFQLPIYDERKNSGIFRTL 203 Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD 163 + ++ Q+ + V I L + + + L +Q + KT + + Sbjct: 204 MVRVGI---QTGEVQVVFITQSLKFPQKEKMVRAINEQLPEVVSIMQNVQN-KKTSLVMG 259 Query: 164 RD----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYC 218 D + E + +++ +F Q N + E + A +++ YC Sbjct: 260 DDTLHLWGKESIEEHINDVVFDLSPRAFFQLNPEQTEVLYNEGIKALDLQPNETVVDAYC 319 Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278 G G L LA+ +V ++ +++ AR+N V N ++++ +E Sbjct: 320 GVGTIGLSLAKQAHQVRGMDTIPAAIDDARFNAKRLGVTNTHYAVGTAEDLLPKWFKE-- 377 Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILS 336 ++ I VDPPR+GLD + + P ++YISCN +L RDL L+ Sbjct: 378 ----------GFKPDAIVVDPPRTGLDRKLLTALLKQPPKKMVYISCNVSTLARDLVQLA 427 Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVRK 365 + ++ L D FP T E V L RK Sbjct: 428 KVYQVDYLQSVDMFPQTARCEVVVKLTRK 456 >gi|168212723|ref|ZP_02638348.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium perfringens CPE str. F4969] gi|170715672|gb|EDT27854.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium perfringens CPE str. F4969] Length = 455 Score = 290 bits (742), Expect = 2e-76, Method: Composition-based stats. Identities = 77/391 (19%), Positives = 150/391 (38%), Gaps = 43/391 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI-----FRSEPIHYRMRAEFHIWHDGD 56 L Y+ QL K DR++ + + I P YR + + I Sbjct: 81 GCKLQHASYKAQLDFKWDRVKDCVSKIGKLDPSIVKYPLGMENPWRYRNKVQLPIGLING 140 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLL---INALMIEMMATIRLEP-----------LLRA 102 ++ F ++ + + ++ + + + L E + + P ++R Sbjct: 141 EVKIGFFAPRSHDIIDMESCLIQDEIGDKVVKLTREWIEKFNIRPYNIDGEYDEKGIVRH 200 Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162 + + + T++ +VT + + + + ++ + K IQ I + KT + L Sbjct: 201 IMIRRGFTTNEVMVVLVTNGENLPHKEEFVDLMVK---NIPGIKSVIQNIN-SKKTNVIL 256 Query: 163 DRD----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELY 217 + + ++ ++ + SF Q N + L A ++ + Y Sbjct: 257 GLESKTLWGEDTISDYIGDFRFNISPLSFFQVNPIQTEVLYGKALEYANLTGNEEVFDAY 316 Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277 CG G +L L++ +V VEI +++ A N N V NV+ S+ Sbjct: 317 CGTGTITLFLSQKAKKVYGVEIIPQAIDNAWINAKENKVENVEFFVGESEVV-------- 368 Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSIL 335 + D+ + + VDPPR G D + + I+Y+SC+P +L RDL +L Sbjct: 369 ----IPDLINKGVKADVVVVDPPRKGCDKKLLDAITNIDAKKIVYVSCDPSTLGRDLKVL 424 Query: 336 ST-THTIERLALFDQFPYTRHMECGVLLVRK 365 + + D FP T H+E LL++K Sbjct: 425 EENGYKTLEVQPVDMFPNTAHIENVALLIKK 455 >gi|187934647|ref|YP_001887516.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum B str. Eklund 17B] gi|187722800|gb|ACD24021.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum B str. Eklund 17B] Length = 455 Score = 290 bits (742), Expect = 3e-76, Method: Composition-based stats. Identities = 79/393 (20%), Positives = 156/393 (39%), Gaps = 46/393 (11%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIF------RSEPIHYRMRAEFHIWHDG 55 ++ Y++QL K +R++ + + +I S P YR + + I Sbjct: 80 GCSIQHMTYKKQLDFKWERVKDCIEKIGGLSKEIINYPMGMESNPYRYRNKVQLPIGKVN 139 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGSLL-------------INALMIEMMA-TIRLEPLLR 101 +++ + ++ + + +DY + + IN + + +L+ Sbjct: 140 NEIVIGFYAPRSHDIIDLDYCLIQDKVADDVANLTKQWIKINNIEPATIDGEFNSNGILK 199 Query: 102 AKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161 + + + ++D+ +V L+ E + + + K + I N T + Sbjct: 200 HLMIRRGF---KTDEVMVVLVATTSNIPKLDEFKHIILENIKGIKSIVLNINPKN-TNVI 255 Query: 162 LDRD----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLE 215 L + Y ++ + + SF Q N + L G+ G+ + + Sbjct: 256 LGEECITLYGEDTIKDYIGEFKFNISPLSFFQVNPIQTEILYNKALE-YAGLTGNETVFD 314 Query: 216 LYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275 YCG G +L L++ +V VEI +P++ A+ N N+V+N + S+E + Sbjct: 315 AYCGTGTITLFLSQKAKKVYGVEIIEPAIINAKENAKLNNVDNAEFFVGKSEEVIPNLIS 374 Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLS 333 E + I VDPPR G D + + ++Y+SC+P +L RDL Sbjct: 375 E------------GLKADIIVVDPPRKGCDIKLLEAIGDVKPERVVYVSCDPSTLSRDLK 422 Query: 334 IL-STTHTIERLALFDQFPYTRHMECGVLLVRK 365 IL + + + D FP T H+E V L++K Sbjct: 423 ILDEKGYKVVEIQPVDMFPQTSHIENVVKLIKK 455 >gi|18309349|ref|NP_561283.1| RNA methyltransferase [Clostridium perfringens str. 13] gi|50401631|sp|Q8XNG6|Y367_CLOPE RecName: Full=Uncharacterized RNA methyltransferase CPE0367 gi|18144025|dbj|BAB80073.1| RNA methyltransferase [Clostridium perfringens str. 13] Length = 455 Score = 290 bits (742), Expect = 3e-76, Method: Composition-based stats. Identities = 77/391 (19%), Positives = 149/391 (38%), Gaps = 43/391 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI-----FRSEPIHYRMRAEFHIWHDGD 56 L Y+ QL K DR++ + + I P YR + + I Sbjct: 81 GCKLQHASYKAQLDFKWDRVKDCVSKIGKLDPSIVKYPLGMENPWRYRNKVQLPIGLING 140 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLL---INALMIEMMATIRLEP-----------LLRA 102 ++ F ++ + + ++ + + + L E + + P ++R Sbjct: 141 EVKIGFFAPRSHDIIDMESCLIQDEIGDKVVKLTREWIEKFNIRPYNVDGEYDEKGIVRH 200 Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162 + + + T++ +VT + + + ++ + K IQ I + KT + L Sbjct: 201 IMIRRGFTTNEVMVVLVTNGEKLPHKEEFVDLMVK---NIPGIKSVIQNIN-SKKTNVIL 256 Query: 163 DRD----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELY 217 + + ++ ++ + SF Q N + L A ++ + Y Sbjct: 257 GLESKTLWGEDTISDYIGDFRFNISPLSFFQVNPIQTEVLYGKALEYANLTGNEEVFDAY 316 Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277 CG G +L L++ +V VEI +++ A N N V NV+ S+ Sbjct: 317 CGTGTITLFLSQKAKKVYGVEIIPQAIDNAWINAKENKVENVEFFVGESEVV-------- 368 Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSIL 335 + D+ + + VDPPR G D + + I+Y+SC+P +L RDL +L Sbjct: 369 ----IPDLINKGVKADVVVVDPPRKGCDKKLLDAITNIDAKKIVYVSCDPSTLGRDLKVL 424 Query: 336 ST-THTIERLALFDQFPYTRHMECGVLLVRK 365 + + D FP T H+E LL++K Sbjct: 425 EENGYKTLEVQPVDMFPNTAHIENVALLIKK 455 >gi|297545033|ref|YP_003677335.1| TrmA family RNA methyltransferase [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296842808|gb|ADH61324.1| RNA methyltransferase, TrmA family [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 453 Score = 290 bits (742), Expect = 3e-76, Method: Composition-based stats. Identities = 75/387 (19%), Positives = 148/387 (38%), Gaps = 39/387 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLA----FQVPNLQIFRSEPIHYRMRAEFHIWHDGDD 57 + YE QL K +++ + + + I EP YR +A+F + + Sbjct: 82 GCSFQHLSYEGQLKYKTQKVKDNLERIGKVYTKVHEIIGMKEPQRYRNKAQFPVGMLDGE 141 Query: 58 LYHIMFDQQTKERMRIDYFMPGSLL-----------INALMIEMMATIRLEPLLRAKLFQ 106 + + ++ + + I+ M + + I + + + L+R + + Sbjct: 142 VVTGFYAPRSHDIVPIESCMIQNEISDNIARTVRNWIKKYNVSVYDEKAGKGLIRHIVTR 201 Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD- 165 + + T + +V H + + L+ + K + I T + + +D Sbjct: 202 VAFKTGEVMVILVVNGKHIPYKE---QLIDALKKEIKGLKSVVLNINTKR-TNVIMGKDN 257 Query: 166 ---YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNG 221 Y + + + + + SF Q N + VL A ++++YCG G Sbjct: 258 ITIYGSDNIIDYIKDIKFEISPLSFFQVNPVQTEVLYGKVLEYADLKGNETVIDVYCGIG 317 Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281 SL A+ V +E +VE A+ N N + NV+ + +++ Sbjct: 318 TISLFAAQKAFFVYGIEAVHQAVEDAKRNAYINGIKNVEFISGQAEKV------------ 365 Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STT 338 + ++ + + +DPPR G D + + I+Y+SCNP +L RDL L Sbjct: 366 MPELVDKGVKADVVIIDPPRKGCDIPVLEAIVNMNPQKIVYVSCNPSTLARDLRYLDDKG 425 Query: 339 HTIERLALFDQFPYTRHMECGVLLVRK 365 + + D FPYT H+E L+ K Sbjct: 426 YKTMEVQPVDMFPYTHHVESVCLITNK 452 >gi|229544908|ref|ZP_04433633.1| tRNA (uracil-5-)-methyltransferase [Enterococcus faecalis TX1322] gi|229309800|gb|EEN75787.1| tRNA (uracil-5-)-methyltransferase [Enterococcus faecalis TX1322] gi|295113655|emb|CBL32292.1| 23S rRNA m(5)U-1939 methyltransferase [Enterococcus sp. 7L76] Length = 456 Score = 290 bits (742), Expect = 3e-76, Method: Composition-based stats. Identities = 80/389 (20%), Positives = 148/389 (38%), Gaps = 41/389 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54 L Y+ QL K D L+Q + F+ N Q I P +YR +A+F + Sbjct: 84 GCQLQHLAYKAQLDFKKDLLKQALNKFKPANYQNYELRKTIGMENPWNYRNKAQFQLRQI 143 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAK 103 + ++ + + + ID + L+N + + + + R Sbjct: 144 DGQVEAGLYQADSHQLVPIDNCLVQQPATTKVMNTLVDLLNDFQLPIYDERKNSGIFRTL 203 Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD 163 + ++ Q+ + V I + + + L +Q + KT + + Sbjct: 204 MVRVGI---QTGEVQVVFITQSQKFPQKEKMVRAINEQLPEVVSIMQNVQN-KKTSLVMG 259 Query: 164 RD----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYC 218 D + E + +++ +F Q N + E + A +++ YC Sbjct: 260 DDTLHLWGKESIEEHINDVVFDLSPRAFFQLNPEQTEVLYNEGIKALNLQPNETVVDAYC 319 Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278 G G L LA+ +V ++ +++ AR+N V N ++++ +E Sbjct: 320 GVGTIGLSLAKQAHQVRGMDTIPAAIDDARFNAKRLGVTNTHYAVGTAEDLLPKWFKE-- 377 Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILS 336 ++ I VDPPR+GLD + + P ++YISCN +L RDL L+ Sbjct: 378 ----------GFKPDAIVVDPPRTGLDRKLLTALLKQPPKKMVYISCNVSTLARDLVQLA 427 Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVRK 365 + ++ L D FP T E V L RK Sbjct: 428 KVYQVDYLQSVDMFPQTARCEVVVKLTRK 456 >gi|254932803|ref|ZP_05266162.1| RNA methyltransferase [Listeria monocytogenes HPB2262] gi|293584356|gb|EFF96388.1| RNA methyltransferase [Listeria monocytogenes HPB2262] gi|332312191|gb|EGJ25286.1| hypothetical protein LMOSA_26720 [Listeria monocytogenes str. Scott A] Length = 453 Score = 290 bits (742), Expect = 3e-76, Method: Composition-based stats. Identities = 71/383 (18%), Positives = 145/383 (37%), Gaps = 38/383 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWHDGDD 57 +L Y+ QL K +++ + M N+++ P YR +++ + Sbjct: 84 GCSLQHLSYDGQLEFKRNQVEETMKRIGKLNVEVPETLGMENPWRYRNKSQVPVGFVNGK 143 Query: 58 LYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLFQ 106 L + +++ + + + + ++ E + +R + + Sbjct: 144 LTAGFYQKRSHAIIDMSTCLIHNEQGDFAVQKTREILAKYGTEPYDEQTGKGDIRHIMTR 203 Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWR---ECAIRLRDALHARKYQIQLIGRANKTKICLD 163 + T Q +VT + + L + + ++TK Sbjct: 204 FAHTTGQLMIVLVTTKERMPFKEEIVRELVEQLELTSIVQNINPHKTNVIFGDRTKTLWG 263 Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELYCGNGN 222 +D +++ + + + SF Q N + + + AA + +++ YCG G+ Sbjct: 264 KDIIEDTIH----GIRFAISARSFYQVNPIQTEVLYQQAIDAAELTGEETVIDAYCGIGS 319 Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282 SL LA+ V VEI +++ AR N N + N ++E A + Sbjct: 320 ISLCLAKKAKHVYGVEIVDQAIQDARANAELNELANTTFETGKAEEVIPAWYKA------ 373 Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILS-TTH 339 + VDPPR G D+ + + A ++Y+SCNP +L RD+ IL+ + Sbjct: 374 ------GIVADVLVVDPPRKGCDEKLLETILAMKPKKVVYVSCNPGTLARDMKILTDGGY 427 Query: 340 TIERLALFDQFPYTRHMECGVLL 362 +++ D FP T H+E +L Sbjct: 428 VAKKVQPVDMFPMTTHIEAVTVL 450 >gi|228899170|ref|ZP_04063440.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis IBL 4222] gi|228860439|gb|EEN04829.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis IBL 4222] Length = 459 Score = 290 bits (742), Expect = 3e-76, Method: Composition-based stats. Identities = 79/384 (20%), Positives = 157/384 (40%), Gaps = 32/384 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ------IFRSEPIHYRMRAEFHIWHDG 55 L Y++QL +K D + Q + +++ + P HYR +++ + Sbjct: 88 GCQLQHLDYKEQLNQKRDIVVQAFEKYMKNSMEEKIRPTLGMENPWHYRNKSQLQVGRKD 147 Query: 56 DDLYHIMFDQQTKERMRIDYFMP-------GSLLINALMIEMMATIRLEPLLRAKLFQID 108 + + ++ Q + + + I + M + ++ ++ ++ +I E + + I Sbjct: 148 EKVITGLYKQNSHQLIDIAHCMIQHKATNEATKVVRRILEKLNVSIYNEKKQKGLVRTIV 207 Query: 109 YLTS-QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY- 166 T+ Q+ + VTLI + + ++ + A K +Q + + I D+ + Sbjct: 208 TRTAVQTGEVQVTLITTKEELPNKEQFVAEVQKQIPAVKSIMQNVNWRKTSVIFGDKTFK 267 Query: 167 --VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELYCGNGNF 223 E + L + +F Q N + + + AA +++ YCG G Sbjct: 268 LAGKEVIQETLGDLSFELSARAFFQLNPEQTIVLYDEAKKAAALTGDEKIVDAYCGVGTI 327 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 L LA V +++ ++ AR N + N K ++++ +E Sbjct: 328 GLWLANDAAEVRGMDVIPEAIADARKNAKRHGFTNTKYEAGKAEQWLPKWVKE------- 380 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILSTTHTI 341 +R I VDPPR+G DD + + ++Y+SCNP SL RD+ L ++ + Sbjct: 381 -----GWRPDVIVVDPPRTGCDDKLLETILKVKPKQVVYVSCNPSSLARDVQALMKSYEV 435 Query: 342 ERLALFDQFPYTRHMECGVLLVRK 365 E + D FP+T H+E V L K Sbjct: 436 EYVQPVDMFPHTAHVENVVRLKLK 459 >gi|259047667|ref|ZP_05738068.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Granulicatella adiacens ATCC 49175] gi|259035858|gb|EEW37113.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Granulicatella adiacens ATCC 49175] Length = 467 Score = 290 bits (742), Expect = 3e-76, Method: Composition-based stats. Identities = 90/389 (23%), Positives = 154/389 (39%), Gaps = 42/389 (10%) Query: 3 GTLL--IDQYEQQLAEKVDRLRQMMLAF-QVPNLQI----FRSEPIHYRMRAEFHIWHDG 55 GT+ YE QLA K +++ +M ++P L++ + YR +A+ + Sbjct: 94 GTMPLQHMTYESQLAFKQQQVKNVMTKIAKMPELEVRRALGMESALGYRNKAQIPVRTVD 153 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-----------LRAKL 104 L F + + + + ++ F I+ L++ + +R P+ L+ + Sbjct: 154 GLLTTGFFKKNSHDLIPMENFHIQDPEIDRLIVAVRDILRKYPVVAYDEANHTGDLKHII 213 Query: 105 FQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQ----LIGRANKTKI 160 + T Q VT +A + + IQ + +TK+ Sbjct: 214 VRRGLRTKQVMIIFVTRTKGLPQAEAIVRDITAAHPEVVSIVQNIQPKPTNVIMGRETKV 273 Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCG 219 D +E+L ++ SF Q N + + + A G+ +++ YCG Sbjct: 274 LFGEDVYEEKL----FEFTFKISARSFFQVNTVQTEVLYQQAIDAADLKGGETVVDAYCG 329 Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279 G SL AR +V A+EI ++ A+ N N V NV ++++ + E Sbjct: 330 IGTMSLAFARDAKKVYAMEIVDDAIVMAKENAKLNGVTNVHFETGAAEKIMPRWKEE--- 386 Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILST 337 + I VDPPR GLD A + A I+Y+SCNP +L RDL Sbjct: 387 ---------GIQPDVIVVDPPRKGLDLAFIEAACATRPERIVYVSCNPATLARDLVHFKE 437 Query: 338 -THTIERLALFDQFPYTRHMECGVLLVRK 365 + + + D FP T H+E LL RK Sbjct: 438 RGYEAQYVQPVDMFPMTAHIEVVGLLERK 466 >gi|168209109|ref|ZP_02634734.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium perfringens B str. ATCC 3626] gi|170712831|gb|EDT25013.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium perfringens B str. ATCC 3626] Length = 455 Score = 290 bits (742), Expect = 3e-76, Method: Composition-based stats. Identities = 77/391 (19%), Positives = 148/391 (37%), Gaps = 43/391 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI-----FRSEPIHYRMRAEFHIWHDGD 56 L Y+ QL K DR++ + + I P YR + + I Sbjct: 81 GCKLQHASYKAQLDFKWDRVKDCVSKIGKLDPSIVKYPLGMENPWRYRNKVQLPIGLING 140 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLL---INALMIEMMATIRLEP-----------LLRA 102 ++ F ++ + + ++ + + + L E + + P ++R Sbjct: 141 EVKIGFFAPRSHDIIDMESCLIQDEIGDKVVKLTREWIEKFNIRPYNVDGEYDEKGIVRH 200 Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162 + + + T++ +VT + + + ++ + K IQ I + KT + L Sbjct: 201 IMIRRGFTTNEVMVVLVTNGEKLPHKEEFVDLMVK---NIPGIKSVIQNIN-SKKTNVIL 256 Query: 163 DRD----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELY 217 + + ++ ++ + SF Q N + L A ++ + Y Sbjct: 257 GLESKTLWGEDTISDYIGDFRFNISPLSFFQVNPTQTEVLYGKALEYANLTGNEEVFDAY 316 Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277 CG G +L L++ +V VEI +++ A N N V NV+ S+ Sbjct: 317 CGTGTITLFLSQKAKKVYGVEIIPQAIDNAWINAKENKVENVEFFVGESEVV-------- 368 Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSIL 335 + D+ + + VDPPR G D + + I+Y+SC+P +L RDL +L Sbjct: 369 ----IPDLINKGVKADVVVVDPPRKGCDKKLLDAITNIDAKKIVYVSCDPSTLGRDLKVL 424 Query: 336 S-TTHTIERLALFDQFPYTRHMECGVLLVRK 365 + + D FP T H+E L+ RK Sbjct: 425 EDNGYKTLEVQPVDMFPNTSHIETVALICRK 455 >gi|331092292|ref|ZP_08341120.1| hypothetical protein HMPREF9477_01763 [Lachnospiraceae bacterium 2_1_46FAA] gi|330401724|gb|EGG81303.1| hypothetical protein HMPREF9477_01763 [Lachnospiraceae bacterium 2_1_46FAA] Length = 554 Score = 290 bits (742), Expect = 3e-76, Method: Composition-based stats. Identities = 82/395 (20%), Positives = 150/395 (37%), Gaps = 39/395 (9%) Query: 2 SGTLLID-QYEQQLAEKVDRLRQMMLAFQ---------VPNLQIFRSEPIHYRMRAEFHI 51 G + + YE+QL K ++R + V P HYR +A+F Sbjct: 78 GGCQIQELSYEKQLEFKEKKVRGNIERIGGFSSEFLDSVMEEICGMDNPFHYRNKAQFPF 137 Query: 52 WHDGDDLYH-IMFDQQTKERMRIDYFMPGSLL-----------INALMIEMMATIRLEPL 99 D + + +T + + G +N I + Sbjct: 138 GTDKNGQIVTGFYAGRTHQIIPNMECALGCEENGKILKIIVDFMNKYHISAYDEKTGKGF 197 Query: 100 LRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRD---ALHARKYQIQLIGRAN 156 +R L + + T + +V + + + ++ ++ + + Sbjct: 198 VRHALLRFGFTTKEIMVCLVVNGDNFPHSEKLVDNLRKIEGMTSITYSVNKENTNVIMGK 257 Query: 157 KTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LL 214 + + Y+ + + + Y+ SF Q N ++ ++ L G+ G+ + Sbjct: 258 SIHLLWGQTYITDYIG----NVKYQISPLSFYQVNPKQTENLYQYALE-YAGLTGEETVW 312 Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274 +LYCG G SL LA+ +V VEI ++E A+ N N + N + ++E Sbjct: 313 DLYCGIGTISLFLAQKAKKVYGVEIVPQAIEDAKRNADINGIENAEFFVGKAEEILP--- 369 Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDL 332 E N ++ D I VDPPR G D+ + + I+Y+SC+ +L RDL Sbjct: 370 -EYYENYAREHDGEKAYADVIVVDPPRKGCDETLLRTMTDMSPERIVYVSCDSATLARDL 428 Query: 333 SILST-THTIERLALFDQFPYTRHMECGVLLVRKP 366 L + ++++ D FP T H+E V LVRK Sbjct: 429 KYLCENGYELQKVRAVDMFPNTVHVETVVKLVRKK 463 >gi|310640376|ref|YP_003945134.1| RNA methyltransferase, trma family [Paenibacillus polymyxa SC2] gi|309245326|gb|ADO54893.1| RNA methyltransferase, TrmA family [Paenibacillus polymyxa SC2] Length = 585 Score = 290 bits (742), Expect = 3e-76, Method: Composition-based stats. Identities = 91/417 (21%), Positives = 149/417 (35%), Gaps = 68/417 (16%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-------------------------------- 29 L YE QL K + ++ Sbjct: 185 GCQLQHMSYEAQLGWKRQHVVDVLERIGKLSVTTESSERTAEVLADSADGNADHMSRVQG 244 Query: 30 -VPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINA--- 85 V + + SEP YR +A+ I L + + + + ++ + + Sbjct: 245 VVVHPTLGMSEPWRYRNKAQVPIGVAEGGLVGGFYARGSHRIVDMNTCLIQDERNDEVVA 304 Query: 86 --------LMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAW----RE 133 L I LLR + + + T + +VT DAW RE Sbjct: 305 RVKEIGRMLGISAYNEETGRGLLRHVVVKTAFRTGEMMLVLVTNGRDIPHADAWIGSIRE 364 Query: 134 CAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAG 193 + + + ++T++ RD + + + + + SF Q N Sbjct: 365 HIPHVASICQNVNTKRTNVIFGDETRVLWGRDVIYDYIG----NVQFAISARSFYQVNPV 420 Query: 194 INVHMLEW-VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIA 252 + V A + +++ YCG G SL LA+H D+V VEI K +++ AR N Sbjct: 421 QTEVLYSKTVEYAGLTGKETVIDAYCGIGTISLFLAQHADQVYGVEIVKEAIDDARSNAL 480 Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312 N + NVK +S++ A + I VDPPR G D + + Sbjct: 481 LNEMRNVKFEVGASEDVIPAWKE------------QGITADVIVVDPPRKGCDPRLLDTI 528 Query: 313 QAYP--HILYISCNPDSLCRDLSILS-TTHTIERLALFDQFPYTRHMECGVLLVRKP 366 ++Y+SCNP +L RDL IL ++ + D FP+T H+E LLVRK Sbjct: 529 LEMKPERVVYVSCNPSTLARDLRILEDGGYSTVEVQPVDMFPHTVHVESVALLVRKD 585 >gi|256763335|ref|ZP_05503915.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis T3] gi|256963815|ref|ZP_05567986.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis HIP11704] gi|307271762|ref|ZP_07553033.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX0855] gi|256684586|gb|EEU24281.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis T3] gi|256954311|gb|EEU70943.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis HIP11704] gi|306511640|gb|EFM80639.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX0855] Length = 456 Score = 289 bits (741), Expect = 3e-76, Method: Composition-based stats. Identities = 80/389 (20%), Positives = 148/389 (38%), Gaps = 41/389 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54 L Y+ QL K D L+Q + F+ N Q I P +YR +A+F + Sbjct: 84 GCQLQHLAYKAQLDFKKDLLKQALNKFKPVNYQNYELRKTIGMENPWNYRNKAQFQLRQI 143 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAK 103 + ++ + + + ID + L+N + + + + R Sbjct: 144 DGQVEAGLYQADSHQLVPIDNCLVQQPATTKVMNTLVDLLNKFQLPIYDERKNSGIFRTL 203 Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD 163 + ++ Q+ + V I + + + L +Q + KT + + Sbjct: 204 MVRVGI---QTGEVQVVFITQSQKFPQKEKMVRAINEQLPEVVSIMQNVQN-KKTSLVMG 259 Query: 164 RD----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYC 218 D + E + +++ +F Q N + E + A +++ YC Sbjct: 260 DDTLHLWGKESIEEHINDVVFDLSPRAFFQLNPEQTEVLYNEGIKALDLQPNETVVDAYC 319 Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278 G G L LA+ +V ++ +++ AR+N V N ++++ +E Sbjct: 320 GVGTIGLSLAKQAHQVRGMDTIPAAIDDARFNAKRLGVTNTHYAVGTAEDLLPKWFKE-- 377 Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILS 336 ++ I VDPPR+GLD + + P ++YISCN +L RDL L+ Sbjct: 378 ----------GFKPDAIVVDPPRTGLDRKLLTALLKQPPKKMVYISCNVSTLARDLVQLA 427 Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVRK 365 + ++ L D FP T E V L RK Sbjct: 428 KVYQVDYLQSVDMFPQTARCEVVVKLTRK 456 >gi|29377186|ref|NP_816340.1| RNA methyltransferase [Enterococcus faecalis V583] gi|227554196|ref|ZP_03984243.1| tRNA (uracil-5-)-methyltransferase [Enterococcus faecalis HH22] gi|257090896|ref|ZP_05585257.1| tRNA (uracil-5-)-methyltransferase trmA [Enterococcus faecalis CH188] gi|257420102|ref|ZP_05597096.1| tRNA (uracil-5-)-methyltransferase [Enterococcus faecalis T11] gi|312902534|ref|ZP_07761740.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX0635] gi|50401756|sp|Q830R6|Y2706_ENTFA RecName: Full=Uncharacterized RNA methyltransferase EF_2706 gi|29344652|gb|AAO82410.1| RNA methyltransferase, TrmA family [Enterococcus faecalis V583] gi|227176695|gb|EEI57667.1| tRNA (uracil-5-)-methyltransferase [Enterococcus faecalis HH22] gi|256999708|gb|EEU86228.1| tRNA (uracil-5-)-methyltransferase trmA [Enterococcus faecalis CH188] gi|257161930|gb|EEU91890.1| tRNA (uracil-5-)-methyltransferase [Enterococcus faecalis T11] gi|310634204|gb|EFQ17487.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX0635] gi|315573827|gb|EFU86018.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX0309B] gi|315580263|gb|EFU92454.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX0309A] Length = 456 Score = 289 bits (741), Expect = 3e-76, Method: Composition-based stats. Identities = 80/389 (20%), Positives = 148/389 (38%), Gaps = 41/389 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54 L Y+ QL K D L+Q + F+ N Q I P +YR +A+F + Sbjct: 84 GCQLQHLAYKAQLDFKKDLLKQALNKFKPANYQNYELRKTIGMDNPWNYRNKAQFQLRQI 143 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAK 103 + ++ + + + ID + L+N + + + + R Sbjct: 144 DGQVEAGLYQADSHQLVPIDNCLVQQPATTKVMNTLVDLLNDFQLPIYDERKNSGIFRTL 203 Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD 163 + ++ Q+ + V I + + + L +Q + KT + + Sbjct: 204 MVRVGI---QTGEVQVVFITQSQKFPQKEKMVRAINEQLPEVVSIMQNVQN-KKTSLVMG 259 Query: 164 RD----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYC 218 D + E + +++ +F Q N + E + A +++ YC Sbjct: 260 DDTLHLWGKESIEEHINDVVFDLSPRAFFQLNPEQTEVLYNEGIKALDLQPNETVVDAYC 319 Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278 G G L LA+ +V ++ +++ AR+N V N ++++ +E Sbjct: 320 GVGTIGLSLAKQAHQVRGMDTIPAAIDDARFNAKRLGVTNTHYAVGTAEDLLPKWFKE-- 377 Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILS 336 ++ I VDPPR+GLD + + P ++YISCN +L RDL L+ Sbjct: 378 ----------GFKPDAIVVDPPRTGLDRKLLTALLKQPPKKMVYISCNVSTLARDLVQLA 427 Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVRK 365 + ++ L D FP T E V L RK Sbjct: 428 KVYQVDYLQSVDMFPQTARCEVVVKLTRK 456 >gi|313608260|gb|EFR84264.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria monocytogenes FSL F2-208] Length = 453 Score = 289 bits (741), Expect = 3e-76, Method: Composition-based stats. Identities = 71/383 (18%), Positives = 145/383 (37%), Gaps = 38/383 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWHDGDD 57 +L Y+ QLA K +++ + M + + P YR +++ + Sbjct: 84 GCSLQHLSYDGQLAFKRNQVEETMKRIGKLKVDVPETLGMENPWRYRNKSQVPVGFVNGK 143 Query: 58 LYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLFQ 106 L + +++ + + + + ++ E + +R + + Sbjct: 144 LTAGFYQKRSHAIIDMSTCLIHNEQGDFAVQKTREILAKYGTEPYDEKTGKGDIRHIMTR 203 Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWREC---AIRLRDALHARKYQIQLIGRANKTKICLD 163 + T Q +VT + + + L + + ++TK Sbjct: 204 FAHTTGQLMLVLVTTKERMPFKNEIVQDLVEQLELTSIVQNINPHKTNVIFGDRTKTLWG 263 Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELYCGNGN 222 +D +++ + + + SF Q N + + + AA + +++ YCG G+ Sbjct: 264 KDIIEDTIH----GIRFAISARSFYQVNPLQTEVLYQQAIDAAELTGEETVIDAYCGIGS 319 Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282 SL LA+ V VEI +++ AR N N + N ++E A + Sbjct: 320 ISLCLAKKAKHVYGVEIVDQAIQDARANAELNELTNTTFETGKAEEVIPAWYKA------ 373 Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILS-TTH 339 + VDPPR G D+ + + A ++Y+SCNP +L RD+ IL+ + Sbjct: 374 ------GIEADVLVVDPPRKGCDEKLLETILAMKPKKVVYVSCNPGTLARDMKILTDGGY 427 Query: 340 TIERLALFDQFPYTRHMECGVLL 362 +++ D FP T H+E +L Sbjct: 428 VAKKVQPVDMFPMTTHIEAVTVL 450 >gi|331086752|ref|ZP_08335829.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lachnospiraceae bacterium 9_1_43BFAA] gi|330409918|gb|EGG89353.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lachnospiraceae bacterium 9_1_43BFAA] Length = 466 Score = 289 bits (741), Expect = 3e-76, Method: Composition-based stats. Identities = 88/393 (22%), Positives = 160/393 (40%), Gaps = 39/393 (9%) Query: 2 SGTLLID-QYEQQLAEKVDRLRQMMLAFQVPNLQI---------FRSEPIHYRMRAEFHI 51 G + + Y++QL K ++ + ++ EP HYR +A+F I Sbjct: 78 GGCQIQEMDYQEQLQFKQKKVIGNLERIGGFAPEVLEKITQPVCGMDEPFHYRNKAQFPI 137 Query: 52 WHDGD-DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLE-----------PL 99 D D + +T + + G ++ E+++ + L Sbjct: 138 GTDKDGKAVAGFYAGRTHQIIPNTDCALGVSQNQQILEEILSVMNENHIPAYNEQDCSGL 197 Query: 100 LRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRL---RDALHARKYQIQLIGRAN 156 +R L + + T + V + D + + ++ R ++ + + Sbjct: 198 VRHILIRYGFTTKEIMVCFVINGDNLPCADKFVDKLSQIEGMRSITFSKNKENTNVIMGK 257 Query: 157 KTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LL 214 + ++ Y+ + + + Y+ SF Q N + ++ L G+ G+ + Sbjct: 258 EIEVLWGDGYITDYIG----NVKYQISPLSFYQVNPVQTEKLYKYALE-YAGLTGEETVW 312 Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274 +LYCG G SL LA+ +V VEI ++E A+ N N + N + ++E A Sbjct: 313 DLYCGIGTISLFLAQKAKQVYGVEIVPQAIEDAKQNAELNDMKNAEFFVGKAEEILPAYY 372 Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCRDL 332 N K+ I VDPPR G ++A + MV+ P I+Y+SC+ +L RDL Sbjct: 373 E----NYAKEHPGQQAHADVIVVDPPRKGCEEALLETMVKMQPDRIVYVSCDSATLARDL 428 Query: 333 SILS-TTHTIERLALFDQFPYTRHMECGVLLVR 364 L + +E++ + DQFP T H EC LL R Sbjct: 429 KYLCGEGYALEKVQVVDQFPNTVHTECVTLLQR 461 >gi|167037107|ref|YP_001664685.1| RNA methyltransferase [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320115522|ref|YP_004185681.1| TrmA family RNA methyltransferase [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166855941|gb|ABY94349.1| RNA methyltransferase, TrmA family [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319928613|gb|ADV79298.1| RNA methyltransferase, TrmA family [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 460 Score = 289 bits (741), Expect = 3e-76, Method: Composition-based stats. Identities = 77/387 (19%), Positives = 148/387 (38%), Gaps = 40/387 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVP----NLQIFRSEPIHYRMRAEFHIWH-DGD 56 +L YE QL K +++ + + I +P YR +A+F + +G Sbjct: 82 GCSLQHLSYEGQLKYKTQKVKDNLERIGKVYTRVHDTIGMEKPQRYRNKAQFPVGMVEGK 141 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLL-----------INALMIEMMATIRLEPLLRAKLF 105 + ++ + + ++ M + I I + + L+R Sbjct: 142 AAVTGFYAPRSHDIVPVESCMIQHEISDEIARIVRNWIRKYNISVYDEKTGKGLIRHIAT 201 Query: 106 QIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161 ++ + T + IV + Y + L DA +E L+ + + + + Sbjct: 202 RVAFKTGEVMAVIVINGKDIPYKKQLIDALKEEIRGLKSVVININTKKTNVIMGEENITI 261 Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220 D + + + + + + SF Q N + L A + ++++YCG Sbjct: 262 YGSDNIIDYI----KDIKFEISPLSFFQVNPVQTEVLYGKALEYADLKGEETVIDVYCGI 317 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G SL A+ V +E +VE A+ N N + NV+ + +++ Sbjct: 318 GTISLFAAQKAAFVYGIEAVHQAVEDAKRNAYINGIKNVEFISGDAEKV----------- 366 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILS-T 337 + ++ + + +DPPR G D + + V I+Y+SCNP +L RDL L Sbjct: 367 -MPELVDKGVKADVVIMDPPRKGCDTSVLEAVIKMNPKKIVYVSCNPSTLARDLRYLEDN 425 Query: 338 THTIERLALFDQFPYTRHMECGVLLVR 364 + + D FPYT H+E L +R Sbjct: 426 GYKTMEVQPVDMFPYTYHVESVALALR 452 >gi|46907981|ref|YP_014370.1| RNA methyltransferase [Listeria monocytogenes serotype 4b str. F2365] gi|226224354|ref|YP_002758461.1| hypothetical RNA methyltransferase [Listeria monocytogenes Clip81459] gi|254992256|ref|ZP_05274446.1| hypothetical RNA methyltransferase [Listeria monocytogenes FSL J2-064] gi|51316673|sp|Q71YR7|Y1776_LISMF RecName: Full=Uncharacterized RNA methyltransferase LMOf2365_1776 gi|46881251|gb|AAT04547.1| RNA methyltransferase, TrmA family [Listeria monocytogenes serotype 4b str. F2365] gi|225876816|emb|CAS05525.1| Putative hypothetical RNA methyltransferase [Listeria monocytogenes serotype 4b str. CLIP 80459] Length = 453 Score = 289 bits (741), Expect = 3e-76, Method: Composition-based stats. Identities = 71/383 (18%), Positives = 145/383 (37%), Gaps = 38/383 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWHDGDD 57 +L Y+ QL K +++ + M N+++ P YR +++ + Sbjct: 84 GCSLQHLSYDGQLEFKRNQVEETMKRIGKLNVEVPETLGMENPWRYRNKSQVPVGFVNGK 143 Query: 58 LYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLFQ 106 L + +++ + + + + ++ E + +R + + Sbjct: 144 LTAGFYQKRSHAIIDMSTCLIHNEQGDFAVQKTREILAKYGTEPYDEQTGKGDIRHIMTR 203 Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWR---ECAIRLRDALHARKYQIQLIGRANKTKICLD 163 + T Q +VT + + L + + ++TK Sbjct: 204 FAHTTGQLMIVLVTTKERMPFKEEIVRELVEQLELTSIVQNINPHKTNVIFGDRTKTLWG 263 Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELYCGNGN 222 +D +++ + + + SF Q N + + + AA + +++ YCG G+ Sbjct: 264 KDIIEDTIH----GIRFAISARSFYQVNPIQTEVLYQQAIDAAELTGEETVIDAYCGIGS 319 Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282 SL LA+ V VEI +++ AR N N + N ++E A + Sbjct: 320 ISLCLAKKAKHVYGVEIVDQAIQDARANAELNELANTTFETGKAEEVIPAWYKA------ 373 Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILS-TTH 339 + VDPPR G D+ + + A ++Y+SCNP +L RD+ IL+ + Sbjct: 374 ------GIVADVLVVDPPRKGCDEKLLETILAMKPKKVVYVSCNPGTLARDMKILTDGGY 427 Query: 340 TIERLALFDQFPYTRHMECGVLL 362 +++ D FP T H+E +L Sbjct: 428 VAKKVQPVDMFPMTTHIEAVTVL 450 >gi|255974885|ref|ZP_05425471.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis T2] gi|256616789|ref|ZP_05473635.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis ATCC 4200] gi|256854009|ref|ZP_05559374.1| RNA methyltransferase [Enterococcus faecalis T8] gi|256961043|ref|ZP_05565214.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis Merz96] gi|257081727|ref|ZP_05576088.1| tRNA (uracil-5-)-methyltransferase [Enterococcus faecalis E1Sol] gi|293384567|ref|ZP_06630433.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis R712] gi|293386796|ref|ZP_06631367.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis S613] gi|307278742|ref|ZP_07559809.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX0860] gi|307290285|ref|ZP_07570201.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX0411] gi|312906393|ref|ZP_07765401.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis DAPTO 512] gi|312979448|ref|ZP_07791136.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis DAPTO 516] gi|255967757|gb|EET98379.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis T2] gi|256596316|gb|EEU15492.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis ATCC 4200] gi|256710952|gb|EEU25995.1| RNA methyltransferase [Enterococcus faecalis T8] gi|256951539|gb|EEU68171.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis Merz96] gi|256989757|gb|EEU77059.1| tRNA (uracil-5-)-methyltransferase [Enterococcus faecalis E1Sol] gi|291078113|gb|EFE15477.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis R712] gi|291083799|gb|EFE20762.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis S613] gi|306498706|gb|EFM68207.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX0411] gi|306504603|gb|EFM73806.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX0860] gi|310627547|gb|EFQ10830.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis DAPTO 512] gi|311287819|gb|EFQ66375.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis DAPTO 516] gi|315030469|gb|EFT42401.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX4000] gi|315032560|gb|EFT44492.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX0017] gi|315170491|gb|EFU14508.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX1342] Length = 456 Score = 289 bits (741), Expect = 3e-76, Method: Composition-based stats. Identities = 80/389 (20%), Positives = 148/389 (38%), Gaps = 41/389 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54 L Y+ QL K D L+Q + F+ N Q I P +YR +A+F + Sbjct: 84 GCQLQHLAYKAQLDFKKDLLKQALNKFKPANYQNYELRKTIGMENPWNYRNKAQFQLRQI 143 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAK 103 + ++ + + + ID + L+N + + + + R Sbjct: 144 DGQVEAGLYQADSHQLVPIDNCLVQQPATTKVMNTLVDLLNDFQLPIYDERKNSGIFRTL 203 Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD 163 + ++ Q+ + V I + + + L +Q + KT + + Sbjct: 204 MVRVGI---QTGEVQVVFITQSQKFPQKEKMVRAINEQLPEVVSIMQNVQN-KKTSLVMG 259 Query: 164 RD----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYC 218 D + E + +++ +F Q N + E + A +++ YC Sbjct: 260 DDTLHLWGKESIEEHINDVVFDLSPRAFFQLNPEQTEVLYNEGIKALDLQPNETVVDAYC 319 Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278 G G L LA+ +V ++ +++ AR+N V N ++++ +E Sbjct: 320 GVGTIGLSLAKQAHQVRGMDTIPAAIDDARFNAKRLGVTNTHYAVGTAEDLLPKWFKE-- 377 Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILS 336 ++ I VDPPR+GLD + + P ++YISCN +L RDL L+ Sbjct: 378 ----------GFKPDAIVVDPPRTGLDRKLLTALLKQPPKKMVYISCNVSTLARDLVQLA 427 Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVRK 365 + ++ L D FP T E V L RK Sbjct: 428 KVYQVDYLQSVDMFPQTARCEVVVKLTRK 456 >gi|163814586|ref|ZP_02205975.1| hypothetical protein COPEUT_00737 [Coprococcus eutactus ATCC 27759] gi|158450221|gb|EDP27216.1| hypothetical protein COPEUT_00737 [Coprococcus eutactus ATCC 27759] Length = 507 Score = 289 bits (741), Expect = 3e-76, Method: Composition-based stats. Identities = 79/392 (20%), Positives = 149/392 (38%), Gaps = 40/392 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN--------LQIFRSEPIHYRMRAEFHIWH 53 T+ YEQQL K ++++ + +P HYR +A+F + Sbjct: 128 GCTMQQVSYEQQLEYKWNKVKNCLQRIGKMENVEAIMEKPAYGMDDPFHYRNKAQFPVGR 187 Query: 54 DG-DDLYHIMFDQQTKERMRIDYFMPGSLL-----------INALMIEMMATIRLEPLLR 101 D D+ + ++ + + + G+ + I I L+R Sbjct: 188 DKNGDVVIGFYAGRSHDIIDTESCAIGAPVNDQIVAIVRSFIEDNHISTYDEETGRGLVR 247 Query: 102 AKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRL---RDALHARKYQIQLIGRANKT 158 L ++ + T + +VT + + +++ + +K Sbjct: 248 HILIRVGFTTKEIMVCLVTNGNKLPHSEILIDELVKIDGMTSICLNVNMENTNRILGDKC 307 Query: 159 KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELY 217 + Y+ + + + Y+ SF Q N + L A + ++Y Sbjct: 308 ITLWGQSYITDYIG----DIKYQISPLSFYQVNPVQTNVLYNKALEYADLSGDETVWDMY 363 Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277 CG G SL LA+ +V VEI +++ AR+N N + N + ++E + ++ Sbjct: 364 CGIGTISLFLAQKAKKVYGVEIVPQAIDDARHNAEINGITNAEFFVGKAEEVVPDIYKK- 422 Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL 335 + VDPPR G D + + A I+Y+SC+P +L RD+ IL Sbjct: 423 --------GGDGSHADVVVVDPPRKGCDQVLLDTLVHMAPERIVYVSCDPATLARDVKIL 474 Query: 336 -STTHTIERLALFDQFPYTRHMECGVLLVRKP 366 + ++A+ DQF ++ H+E LL RK Sbjct: 475 QEKGYVANKVAVVDQFCHSGHVESVCLLSRKD 506 >gi|23098223|ref|NP_691689.1| RNA methyltransferase [Oceanobacillus iheyensis HTE831] gi|50401583|sp|Q8ES75|Y768_OCEIH RecName: Full=Uncharacterized RNA methyltransferase OB0768 gi|22776448|dbj|BAC12724.1| RNA methyltransferase [Oceanobacillus iheyensis HTE831] Length = 459 Score = 289 bits (741), Expect = 3e-76, Method: Composition-based stats. Identities = 81/389 (20%), Positives = 149/389 (38%), Gaps = 41/389 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56 L Y+ QL K ++ +M + + EP HYR + + + Sbjct: 84 GCQLQHMSYDLQLQMKQGQVHNVMKKVAHLDQVPVHPILGMEEPSHYRNKVQIPVGEKNG 143 Query: 57 DLYHIMFDQQTKERMR-IDYFMPGSLLINALMI---EMMATIRLEPL--------LRAKL 104 ++ + +++ ++ D IN ++ ++M ++ LR + Sbjct: 144 EVIVGFYQKRSHRILQNQDTCHIQDEAINEVLPFTRQLMNKYGIQAYDEKSHRGQLRHIM 203 Query: 105 FQIDYLTSQSDQAIVTLIYHRLLDD----AWRECAIRLRDALHARKYQIQLIGRANKTKI 160 ++ + T VT D E +++ + Q + KTK+ Sbjct: 204 VRVGHYTKDIMIVFVTKTSKFPEKDRIIKELTEQFPQVKSIVQNVNDQRTNVVLGKKTKV 263 Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCG 219 +Y+ +++ L + SF Q N + + L + D+ ++ YCG Sbjct: 264 LWGENYIYDKIG----DLTFAISPKSFFQVNPVQTKVLYDKALEYANIDKDDVVIDAYCG 319 Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279 G+ SL LA+ +V +E+ ++E A+ N N +NNV+ +++ + Sbjct: 320 IGSISLFLAQKAKKVYGIEVVPEAIEDAKMNAEINGMNNVEFSVGQAEKVMPKWKE---- 375 Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILS- 336 I VDPPR G D + + A I+Y+SCNP +L RDL IL Sbjct: 376 --------QGLDPDVIVVDPPRKGCDVDFLEAMIAMKPKRIVYVSCNPSTLARDLRILED 427 Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVRK 365 +++ D FP T H+EC L K Sbjct: 428 GGFETKQVQPVDMFPSTNHVECVAELTLK 456 >gi|224499529|ref|ZP_03667878.1| hypothetical protein LmonF1_07452 [Listeria monocytogenes Finland 1988] Length = 453 Score = 289 bits (741), Expect = 4e-76, Method: Composition-based stats. Identities = 74/383 (19%), Positives = 148/383 (38%), Gaps = 38/383 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWHDGDD 57 +L Y+ QL K +++ + M N+++ P YR +++ + Sbjct: 84 GCSLQHLSYDGQLEFKRNQVEETMKRIGKLNVEVPETLGMENPWRYRNKSQVPVGFVNGK 143 Query: 58 LYHIMFDQQTKERMRIDYFMPGSL---LINALMIEMMATIRLEPL--------LRAKLFQ 106 L + +++ + + + + L E++A EP +R + + Sbjct: 144 LTAGFYQKRSHAIIDMSTCLIHNEQGDLAVQKTREILAKYGTEPYDEQTGKGDIRHIMTR 203 Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWREC---AIRLRDALHARKYQIQLIGRANKTKICLD 163 + T Q +VT + + L + + ++TK Sbjct: 204 FAHTTGQLMIVLVTTKERMPFKEEIVRDLVEQLELTSIVQNINPHKTNVIFGDRTKTLWG 263 Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELYCGNGN 222 +D +++ + + + SF Q N + + + AA + +++ YCG G+ Sbjct: 264 KDIIEDTIH----GIRFAISARSFYQVNPLQTEVLYQQAIDAAELTGEETVIDAYCGIGS 319 Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282 SL LA+ V VEI +++ AR N N + N ++E + + Sbjct: 320 ISLCLAKKAKHVYGVEIVDQAIQDARANAELNELANTTFETGKAEEVIPSWYKA------ 373 Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILS-TTH 339 + VDPPR G D+ + + A ++Y+SCNP +L RD+ IL+ + Sbjct: 374 ------GIVADVLVVDPPRKGCDEKLLETILAMKPKKVVYVSCNPGTLARDMKILTDGGY 427 Query: 340 TIERLALFDQFPYTRHMECGVLL 362 +++ D FP T H+E +L Sbjct: 428 VAKKVQPVDMFPMTTHIEAVTVL 450 >gi|224476953|ref|YP_002634559.1| putative RNA methyltransferase [Staphylococcus carnosus subsp. carnosus TM300] gi|222421560|emb|CAL28374.1| putative RNA methyltransferase [Staphylococcus carnosus subsp. carnosus TM300] Length = 453 Score = 289 bits (741), Expect = 4e-76, Method: Composition-based stats. Identities = 76/388 (19%), Positives = 144/388 (37%), Gaps = 40/388 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWH-DG 55 L Y+ QL K +++ + + N I P YR +++ + Sbjct: 82 GCQLQHLAYDAQLEMKRNQVINLFHRKGKYTDTIINETIGMMNPWSYRNKSQIPVGKNKD 141 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGS-----------LLINALMIEMMATIRLEPLLRAKL 104 + Q++ + + +D + L+N + + E LLR + Sbjct: 142 GKTVMGFYRQRSHDIIDMDECIIQDSIQNQLMVMIKELLNKYKVSIYNEKSKEGLLRHVI 201 Query: 105 FQIDYLTSQSDQAIVTL----IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKI 160 ++ Y + + VT ++ + E ++ + + +K Sbjct: 202 IRVGYTSREVMVVFVTNGKKFKQASVIIEKLVEAVPNIKSVIQNINESHSNVIMGRHSKT 261 Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCG 219 +D +++ L ++ ++ + SF Q N+ V + L A +L+ YCG Sbjct: 262 LFGKDEIEDDL----DSVEFKISDQSFYQINSEQTVKLYNKALEYAQLNGDETVLDTYCG 317 Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279 G L +A V VE+ ++E A+ N N NN V ++E + + Sbjct: 318 IGTIGLYMAEKAKHVYGVEVVPAAIEDAKQNAELNSFNNTTFVCGKAEEVIMQWKAD--- 374 Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST 337 + + VDPPR G D+ + + I+YISCNP + RD IL+ Sbjct: 375 ---------GIQPDVVMVDPPRKGCDEQFLKTLLELNPKRIVYISCNPSTQQRDAGILTE 425 Query: 338 THTIERLALFDQFPYTRHMECGVLLVRK 365 + ++ + D FP T H+E L K Sbjct: 426 QYQLKEITPVDMFPQTTHIETVALFEHK 453 >gi|16803791|ref|NP_465276.1| hypothetical protein lmo1751 [Listeria monocytogenes EGD-e] gi|47095677|ref|ZP_00233284.1| RNA methyltransferase, TrmA family [Listeria monocytogenes str. 1/2a F6854] gi|224503324|ref|ZP_03671631.1| hypothetical protein LmonFR_12550 [Listeria monocytogenes FSL R2-561] gi|254900744|ref|ZP_05260668.1| hypothetical protein LmonJ_13049 [Listeria monocytogenes J0161] gi|254913771|ref|ZP_05263783.1| RNA methyltransferase [Listeria monocytogenes J2818] gi|254938158|ref|ZP_05269855.1| RNA methyltransferase [Listeria monocytogenes F6900] gi|255028262|ref|ZP_05300213.1| hypothetical protein LmonL_01654 [Listeria monocytogenes LO28] gi|50401632|sp|Q8Y6D6|Y1751_LISMO RecName: Full=Uncharacterized RNA methyltransferase lmo1751 gi|16411205|emb|CAC99829.1| lmo1751 [Listeria monocytogenes EGD-e] gi|47015962|gb|EAL06888.1| RNA methyltransferase, TrmA family [Listeria monocytogenes str. 1/2a F6854] gi|258610771|gb|EEW23379.1| RNA methyltransferase [Listeria monocytogenes F6900] gi|293591787|gb|EFG00122.1| RNA methyltransferase [Listeria monocytogenes J2818] Length = 453 Score = 289 bits (741), Expect = 4e-76, Method: Composition-based stats. Identities = 70/383 (18%), Positives = 145/383 (37%), Gaps = 38/383 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWHDGDD 57 +L Y+ QL K +++ + M N+++ P YR +++ + Sbjct: 84 GCSLQHLSYDGQLEFKRNQVEETMKRIGKLNVEVPETLGMENPWRYRNKSQVPVGFVNGK 143 Query: 58 LYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLFQ 106 L + +++ + + + + ++ E + +R + + Sbjct: 144 LTAGFYQKRSHAIIDMSTCLIHNEQGDFAVQKTREILAKYGTEPYDEQTGKGDIRHIMTR 203 Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWREC---AIRLRDALHARKYQIQLIGRANKTKICLD 163 + T Q +VT + + L + + ++TK Sbjct: 204 FAHTTGQLMIVLVTTKERMPFKEEIVRDLVEQLELTSIVQNINPHKTNVIFGDRTKTLWG 263 Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELYCGNGN 222 +D +++ + + + SF Q N + + + AA + +++ YCG G+ Sbjct: 264 KDIIEDTIH----GIRFAISARSFYQVNPLQTEVLYQQAIDAAELTGEETVIDAYCGIGS 319 Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282 SL LA+ V VEI +++ AR N N + N ++E + + Sbjct: 320 ISLCLAKKAKHVYGVEIVDQAIQDARANAELNELANTTFETGKAEEVIPSWYKA------ 373 Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILS-TTH 339 + VDPPR G D+ + + A ++Y+SCNP +L RD+ IL+ + Sbjct: 374 ------GIVADVLVVDPPRKGCDEKLLETILAMKPKKVVYVSCNPGTLARDMKILTDGGY 427 Query: 340 TIERLALFDQFPYTRHMECGVLL 362 +++ D FP T H+E +L Sbjct: 428 VAKKVQPVDMFPMTTHIEAVTVL 450 >gi|312900072|ref|ZP_07759389.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX0470] gi|311292829|gb|EFQ71385.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX0470] Length = 456 Score = 289 bits (741), Expect = 4e-76, Method: Composition-based stats. Identities = 80/389 (20%), Positives = 148/389 (38%), Gaps = 41/389 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54 L Y+ QL K D L+Q + F+ N Q I P +YR +A+F + Sbjct: 84 GCQLQHLAYKAQLDFKKDLLKQALNKFKPANYQNYELRKTIGMENPWNYRNKAQFQLRQI 143 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAK 103 + ++ + + + ID + L+N + + + + R Sbjct: 144 DGQVEAGLYQADSHQLVPIDNCLVQQPATTKVMNTLVDLLNDFQLPIYDERKNSGIFRTL 203 Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD 163 + ++ Q+ + V I + + + L +Q + KT + + Sbjct: 204 MVRVGI---QTGEVQVVFITQSQKFPQKEKMVRAINEQLPEVVSIMQNVQN-KKTSLVMG 259 Query: 164 RD----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYC 218 D + E + +++ +F Q N + E + A +++ YC Sbjct: 260 DDTLHLWGKESIEEHINDVVFDLSPRAFFQLNPEQTEVLYNEGIKALDLQPNETVVDAYC 319 Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278 G G L LA+ +V ++ +++ AR+N V N ++++ +E Sbjct: 320 GVGTIGLSLAKQAHQVRGMDTIPAAIDDARFNAKRLGVTNTHYAVGTAEDLLPKWFKE-- 377 Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILS 336 ++ I VDPPR+GLD + + P ++YISCN +L RDL L+ Sbjct: 378 ----------GFKPDAIVVDPPRTGLDRKLLTALLKQPPKKMVYISCNVSTLARDLIQLA 427 Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVRK 365 + ++ L D FP T E V L RK Sbjct: 428 KVYQVDYLQSVDMFPQTARCEVVVKLTRK 456 >gi|229549174|ref|ZP_04437899.1| tRNA (uracil-5-)-methyltransferase [Enterococcus faecalis ATCC 29200] gi|255971891|ref|ZP_05422477.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis T1] gi|256957937|ref|ZP_05562108.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis DS5] gi|257079874|ref|ZP_05574235.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis JH1] gi|257421676|ref|ZP_05598666.1| RNA methyltransferase [Enterococcus faecalis X98] gi|294780400|ref|ZP_06745766.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis PC1.1] gi|300860697|ref|ZP_07106784.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TUSoD Ef11] gi|307269643|ref|ZP_07550978.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX4248] gi|312953733|ref|ZP_07772567.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX0102] gi|229305411|gb|EEN71407.1| tRNA (uracil-5-)-methyltransferase [Enterococcus faecalis ATCC 29200] gi|255962909|gb|EET95385.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis T1] gi|256948433|gb|EEU65065.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis DS5] gi|256987904|gb|EEU75206.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis JH1] gi|257163500|gb|EEU93460.1| RNA methyltransferase [Enterococcus faecalis X98] gi|294452500|gb|EFG20936.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis PC1.1] gi|300849736|gb|EFK77486.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TUSoD Ef11] gi|306514033|gb|EFM82620.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX4248] gi|310628360|gb|EFQ11643.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX0102] gi|315035082|gb|EFT47014.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX0027] gi|315148672|gb|EFT92688.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX4244] gi|315151812|gb|EFT95828.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX0031] gi|315155574|gb|EFT99590.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX0043] gi|315159336|gb|EFU03353.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX0312] gi|323481633|gb|ADX81072.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis 62] gi|329570604|gb|EGG52323.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX1467] Length = 456 Score = 289 bits (741), Expect = 4e-76, Method: Composition-based stats. Identities = 80/389 (20%), Positives = 148/389 (38%), Gaps = 41/389 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54 L Y+ QL K D L+Q + F+ N Q I P +YR +A+F + Sbjct: 84 GCQLQHLAYKAQLDFKKDLLKQALNKFKPANYQNYELRKTIGMENPWNYRNKAQFQLRQI 143 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAK 103 + ++ + + + ID + L+N + + + + R Sbjct: 144 DGQVEAGLYQADSHQLVPIDNCLVQQPATTKVMNTLVDLLNNFQLPIYDERKNSGIFRTL 203 Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD 163 + ++ Q+ + V I + + + L +Q + KT + + Sbjct: 204 MVRVGI---QTGEVQVVFITQSQKFPQKEKMVRAINEQLPEVVSIMQNVQN-KKTSLVMG 259 Query: 164 RD----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYC 218 D + E + +++ +F Q N + E + A +++ YC Sbjct: 260 DDTLHLWGKESIEEHINDVVFDLSPRAFFQLNPEQTEVLYNEGIKALDLQPNETVVDAYC 319 Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278 G G L LA+ +V ++ +++ AR+N V N ++++ +E Sbjct: 320 GVGTIGLSLAKQAHQVRGMDTIPAAIDDARFNAKRLGVTNTHYAVGTAEDLLPKWFKE-- 377 Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILS 336 ++ I VDPPR+GLD + + P ++YISCN +L RDL L+ Sbjct: 378 ----------GFKPDAIVVDPPRTGLDRKLLTALLKQPPKKMVYISCNVSTLARDLVQLA 427 Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVRK 365 + ++ L D FP T E V L RK Sbjct: 428 KVYQVDYLQSVDMFPQTARCEVVVKLTRK 456 >gi|307276947|ref|ZP_07558057.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX2134] gi|306506370|gb|EFM75530.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX2134] Length = 456 Score = 289 bits (740), Expect = 4e-76, Method: Composition-based stats. Identities = 80/389 (20%), Positives = 148/389 (38%), Gaps = 41/389 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54 L Y+ QL K D L+Q + F+ N Q I P +YR +A+F + Sbjct: 84 GCQLQHLAYKAQLDFKKDLLKQALNKFKPANYQNYELRKTIGMENPWNYRNKAQFQLRQI 143 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAK 103 + ++ + + + ID + L+N + + + + R Sbjct: 144 DGQVEAGLYQADSHQLVPIDNCLVQQPATTKVMNTLVDLLNDFQLPIYDERKNSGIFRTL 203 Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD 163 + ++ Q+ + V I + + + L +Q + KT + + Sbjct: 204 MVRVGI---QTGEVQVVFITQSQKFPQKEKMVRAINEQLPEVVSIMQNVQN-KKTSLVMG 259 Query: 164 RD----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYC 218 D + E + +++ +F Q N + E + A +++ YC Sbjct: 260 DDTLHLWGKESIEEHINDVVFDLSPRAFFQLNPEQTEVLYNEGIKALDLQPNETVVDAYC 319 Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278 G G L LA+ +V ++ +++ AR+N V N ++++ +E Sbjct: 320 GVGTIGLSLAKQAHQVRGMDTIPAAIDDARFNAKRLGVTNTHYAVGTAEDLLPKWFKE-- 377 Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILS 336 ++ I VDPPR+GLD + + P ++YISCN +L RDL L+ Sbjct: 378 ----------GFKPDAIVVDPPRTGLDRKLLTALLKQPPKKMVYISCNVSTLARDLVQLA 427 Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVRK 365 + ++ L D FP T E V L RK Sbjct: 428 KVYQVDYLQSVDMFPQTARCEVVVKLTRK 456 >gi|325663161|ref|ZP_08151611.1| hypothetical protein HMPREF0490_02352 [Lachnospiraceae bacterium 4_1_37FAA] gi|325470615|gb|EGC73845.1| hypothetical protein HMPREF0490_02352 [Lachnospiraceae bacterium 4_1_37FAA] Length = 464 Score = 289 bits (740), Expect = 4e-76, Method: Composition-based stats. Identities = 88/393 (22%), Positives = 158/393 (40%), Gaps = 39/393 (9%) Query: 2 SGTLLID-QYEQQLAEKVDRLRQMMLAFQVPNLQI---------FRSEPIHYRMRAEFHI 51 G + + Y++QL K ++ + ++ EP HYR +A+F + Sbjct: 78 GGCQIQEMDYQEQLQFKQKKVIGNLERIGGFAPEVLEKITQPVCGMDEPFHYRNKAQFPV 137 Query: 52 WHDGD-DLYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPL 99 D D + +T + + G ++N I L Sbjct: 138 GTDKDGKAVTGFYAGRTHQIIPNTDCALGVSQNQQILEEILSIMNENHIPAYNEQDCSGL 197 Query: 100 LRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRL---RDALHARKYQIQLIGRAN 156 +R L + + T + V + D + + ++ R ++ + + Sbjct: 198 VRHILIRYGFTTKEIMVCFVINGDNLPCADKFVDKLSQIEGMRSITFSKNKENTNVIMGK 257 Query: 157 KTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LL 214 + ++ Y+ + + + Y+ SF Q N + ++ L G+ G+ + Sbjct: 258 EIEVLWGDGYITDYIG----NVKYQISPLSFYQVNPVQTEKLYKYALE-YAGLTGEETVW 312 Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274 +LYCG G SL LA+ +V VEI ++E A+ N N + N + ++E A Sbjct: 313 DLYCGIGTISLFLAQKAKQVYGVEIVPQAIEDAKQNAELNDMKNAEFFVGKAEEILPAYY 372 Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCRDL 332 N K+ I VDPPR G ++A + MV+ P I+Y+SC+ +L RDL Sbjct: 373 E----NYAKEHPGQQAHADVIVVDPPRKGCEEALLETMVKMQPDRIVYVSCDSATLARDL 428 Query: 333 SILS-TTHTIERLALFDQFPYTRHMECGVLLVR 364 L + +E++ + DQFP T H+E VLL R Sbjct: 429 KYLCGEGYALEKVQVVDQFPNTVHVETCVLLQR 461 >gi|168216552|ref|ZP_02642177.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium perfringens NCTC 8239] gi|182381468|gb|EDT78947.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium perfringens NCTC 8239] Length = 455 Score = 289 bits (740), Expect = 4e-76, Method: Composition-based stats. Identities = 76/391 (19%), Positives = 148/391 (37%), Gaps = 43/391 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI-----FRSEPIHYRMRAEFHIWHDGD 56 L Y+ QL K DR++ + + I P YR + + I Sbjct: 81 GCKLQHASYKAQLDFKWDRVKDCVSKIGKLDPSIVKYPLGMENPWRYRNKVQLPIGLING 140 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLL---INALMIEMMATIRLEP-----------LLRA 102 ++ F ++ + + ++ + + + L E + + P ++R Sbjct: 141 EVKIGFFAPRSHDIIDMESCLIQDEIGDKVVKLTREWIEKFNIRPYNVDGEYDEKGIVRH 200 Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162 + + + T++ +VT + + + ++ + K IQ I + KT + L Sbjct: 201 IMIRRGFTTNEVMVVLVTNGEKLPHKEEFVDLMVK---NIPGIKSVIQNIN-SKKTNVIL 256 Query: 163 DRD----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELY 217 + + ++ ++ + SF Q N + L A ++ + Y Sbjct: 257 GLESKTLWGEDTISDYIGDFRFNISPLSFFQVNPTQTEVLYGKALEYANLTGNEEVFDAY 316 Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277 CG G +L L++ +V VEI +++ A N N V NV+ S+ Sbjct: 317 CGTGTITLFLSQKAKKVYGVEIIPQAIDNAWINAKENKVENVEFFVGESEVV-------- 368 Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSIL 335 + D+ + + VDPPR G D + + I+Y+SC+P +L RDL +L Sbjct: 369 ----IPDLINKGVKADVVVVDPPRKGCDKKLLDSITNIDAKKIVYVSCDPSTLGRDLQVL 424 Query: 336 ST-THTIERLALFDQFPYTRHMECGVLLVRK 365 + + D FP T H+E L++K Sbjct: 425 EENGYKTLEVQPVDMFPNTSHVENVAKLIKK 455 >gi|257898308|ref|ZP_05677961.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium Com15] gi|257836220|gb|EEV61294.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium Com15] Length = 457 Score = 289 bits (740), Expect = 4e-76, Method: Composition-based stats. Identities = 78/384 (20%), Positives = 155/384 (40%), Gaps = 40/384 (10%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGDDLY 59 L +YEQQL K ++ +M + +EP YR +A+ + L Sbjct: 88 LAHLKYEQQLVFKQKQVEHVMAKIAKMPEVPVLPTVGMAEPFGYRNKAQIPVRRIDGQLA 147 Query: 60 HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIR-----------LEPLLRAKLFQID 108 + + + + + I+ F +I+ + + ++ E LR + + Sbjct: 148 TGFYKKNSHDLVPIEDFYIQDPVIDQAIKVVRDILQRFQVRGYNEEKNEGQLRHIIIRRG 207 Query: 109 YLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR 164 + + + +VT + + +A E + + + + +K K+ R Sbjct: 208 HYSHEMMVVLVTRKEKFFKSKEIAEAIHEELPEVVSVIQNINEEKTNVILGDKEKVLYGR 267 Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNF 223 DY++++L YR SF Q N ++ + + + + D +++ Y G G Sbjct: 268 DYIEDQLLGK----TYRISAKSFYQVNTQQAEYLYQTAIEFAELDKKDIVIDAYSGIGTI 323 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 L LA D+V +E+ ++E A++N N + NV +++ + + Sbjct: 324 GLSLADRVDKVYGMEVIPEAIEDAQFNALNNKIENVHYEVGKAEKVMKKWQE-------- 375 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCRDLSILST-THT 340 + I VDPPR GLD + ++ P I+YISCNP + RD + + + Sbjct: 376 ----KGIKPSVIVVDPPRKGLDHHFIESAIEMSPERIVYISCNPATFARDAKLFAEAGYA 431 Query: 341 IERLALFDQFPYTRHMECGVLLVR 364 ++++ D FP T H+E V+ Sbjct: 432 VKKVQPVDLFPQTHHIELVASFVK 455 >gi|294618092|ref|ZP_06697689.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium E1679] gi|291595664|gb|EFF26960.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium E1679] Length = 457 Score = 289 bits (740), Expect = 4e-76, Method: Composition-based stats. Identities = 79/384 (20%), Positives = 155/384 (40%), Gaps = 40/384 (10%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGDDLY 59 L +YEQQL K ++ +M + +EP YR +A+ + L Sbjct: 88 LAHLKYEQQLVFKQKQVEHVMAKIAKMPEVPVLPTVGMAEPFGYRNKAQIPVRRIDGQLA 147 Query: 60 HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIR-----------LEPLLRAKLFQID 108 + + + + + I+ F +I+ + + ++ E LR + + Sbjct: 148 TGFYKKNSHDLVPIEDFYIQDPVIDQAIKVVRDILQRFQVRGYNEEKNEGQLRHIIIRRG 207 Query: 109 YLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR 164 + + + +VT + + +A E + + + + +K K+ R Sbjct: 208 HYSHEMMVVLVTRKEKFFKSKEIAEAIHEELPEVVSVIQNINEEKTNVILGDKEKVLYGR 267 Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNF 223 DY++++L YR SF Q N ++ + + + + D +++ Y G G Sbjct: 268 DYIEDQLLGK----TYRISAKSFYQVNTQQAEYLYQTAIEFAELDKKDIVIDAYSGIGTI 323 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 L LA D+V +E+ ++E A++N N + NV +++ + + Sbjct: 324 GLSLADRVDKVYGMEVIPEAIEDAQFNSLNNKIENVHYEVGKAEKVMKKWQE-------- 375 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCRDLSIL-STTHT 340 + I VDPPR GLD + ++ P I+YISCNP + RD +L + Sbjct: 376 ----KGVKPSVIVVDPPRKGLDHHFIESAIEMSPERIVYISCNPATFARDAKLLTEAGYV 431 Query: 341 IERLALFDQFPYTRHMECGVLLVR 364 ++++ D FP T H+E V+ Sbjct: 432 VKKVQPVDLFPQTHHIELVASFVK 455 >gi|218895544|ref|YP_002443955.1| RNA methyltransferase, TrmA family [Bacillus cereus G9842] gi|218542488|gb|ACK94882.1| RNA methyltransferase, TrmA family [Bacillus cereus G9842] Length = 459 Score = 289 bits (740), Expect = 4e-76, Method: Composition-based stats. Identities = 78/384 (20%), Positives = 157/384 (40%), Gaps = 32/384 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ------IFRSEPIHYRMRAEFHIWHDG 55 L Y++QL +K D + Q + +++ + P HYR +++ + Sbjct: 88 GCQLQHLDYKEQLNQKRDIVVQAFEKYMKNSMEEKIRPTLGMENPWHYRNKSQLQVGRKD 147 Query: 56 DDLYHIMFDQQTKERMRIDYFMP-------GSLLINALMIEMMATIRLEPLLRAKLFQID 108 + + ++ Q + + + I + M + ++ ++ ++ +I E + + I Sbjct: 148 EKVITGLYKQNSHQLIDIAHCMIQHKATNEATKVVRRILEKLNVSIYNEKKQKGLVRTIV 207 Query: 109 YLTS-QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY- 166 T+ Q+ + VTLI + + ++ + A K +Q + + I D+ + Sbjct: 208 TRTAVQTGEVQVTLITTKEELPNKEQFVAEVQKQMPAVKSIMQNVNWRKTSVIFGDKTFK 267 Query: 167 --VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELYCGNGNF 223 E + L + +F Q N + + + AA +++ YCG G Sbjct: 268 LAGKEVIQETLGDLSFELSARAFFQLNPEQTIVLYDEAKKAAALTGDEKIVDAYCGVGTI 327 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 L LA V +++ ++ AR N + N K ++++ +E Sbjct: 328 GLWLANDAAEVRGMDVIPEAIADARKNAKRHGFTNTKYEAGKAEQWLPKWVKE------- 380 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILSTTHTI 341 +R I VDPPR+G DD + + ++Y+SCNP SL RD+ L ++ + Sbjct: 381 -----GWRPDVIVVDPPRTGCDDKLLETILKVKPKQVVYVSCNPSSLARDVQALMKSYEV 435 Query: 342 ERLALFDQFPYTRHMECGVLLVRK 365 + + D FP+T H+E V L K Sbjct: 436 DYVQPVDMFPHTAHVENVVRLKLK 459 >gi|312112309|ref|YP_003990625.1| RNA methyltransferase, TrmA family [Geobacillus sp. Y4.1MC1] gi|311217410|gb|ADP76014.1| RNA methyltransferase, TrmA family [Geobacillus sp. Y4.1MC1] Length = 459 Score = 289 bits (740), Expect = 4e-76, Method: Composition-based stats. Identities = 82/393 (20%), Positives = 149/393 (37%), Gaps = 49/393 (12%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54 L YE QL EK D + Q + ++ I +P HYR +++F + Sbjct: 86 GCQLQHLDYEAQLREKRDIVIQALERHCRLPVETLEIRPTIGMEDPWHYRNKSQFQVGMK 145 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGSLLINA-----------LMIEMMATIRLEPLLRAK 103 ++ ++ + + + I + N L I + L+R Sbjct: 146 KGEVIAGLYGLNSHQLIDISECLIQHPATNRVTNMVKMILQDLRIPIYNERTQTGLVRTI 205 Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD 163 + ++ + T ++T + ++ L K +Q I KT + Sbjct: 206 VARVGFRTGDVQLVLITAKKEIPRKEL---LIAEIKRRLPEVKSIVQNIN-GQKTSLIFG 261 Query: 164 RD--------YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLL 214 + Y+ E L L + +F Q N V + + V AA ++ Sbjct: 262 EESLLLEGEEYIQEVLG----DLSFELSARAFFQLNPVQTVKLYDEVKKAAALTGTEKVV 317 Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274 + YCG G L LA+ + +++ ++E A+ N + N V ++ Sbjct: 318 DAYCGVGTIGLWLAKDAGEIRGMDVIPEAIEDAKKNAKKHGFANATYVSGKAEALLPKWV 377 Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDL 332 +E ++ I VDPPR+G D+ + + I+Y+SCNP SL RD+ Sbjct: 378 KE------------GWKPDVIVVDPPRTGCDEQLLKTILKVKPQRIVYVSCNPSSLARDI 425 Query: 333 SILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 +LS + ++ + D FP+T H+EC L K Sbjct: 426 DVLSKFYKVDYIQPVDMFPHTAHVECVAKLTLK 458 >gi|169825840|ref|YP_001695998.1| putative RNA methyltransferase [Lysinibacillus sphaericus C3-41] gi|168990328|gb|ACA37868.1| Hypothetical RNA methyltransferase [Lysinibacillus sphaericus C3-41] Length = 459 Score = 289 bits (740), Expect = 4e-76, Method: Composition-based stats. Identities = 79/386 (20%), Positives = 144/386 (37%), Gaps = 40/386 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMML---AFQVPNLQI-FRSEPIHYRMRAEFHIW-HDGD 56 L YE QL K + +R +M P L + EP HYR +A+ ++ Sbjct: 88 GCQLQHLSYEGQLKWKENMVRNVMQRIGKIDAPVLPVKGMKEPWHYRNKAQIPFSENEAG 147 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEM-----------MATIRLEPLLRAKLF 105 + +T + ++ + + +A+++ + + E +LR + Sbjct: 148 QAIAGFYKTKTHSIVDMERCLIQTGEADAILVGLKKELVAIGMRPYNELSHEGMLRHVVI 207 Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRL----RDALHARKYQIQLIGRANKTKIC 161 + T + +VT +A +L + ++ + + T Sbjct: 208 RKARATGEVMVVLVTKKKKFPQKEAAIAVIQKLVPNVTSIMQNVNHEKTNVIFGDDTLNL 267 Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220 +D + + + + + SF Q N + + L A +++ YCG Sbjct: 268 WGKDVIIDTIG----DVRFEISARSFYQVNPEQTEVLYKQALDYANLQGDERVIDAYCGI 323 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G SL LA+ V+ VEI ++E A+ N N N ++E +E Sbjct: 324 GTISLFLAQKARAVMGVEIVPQAIEDAKRNAVLNGFTNTYFEAGPAEEVIPRWYKE---- 379 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILS-T 337 + VDPPR G D+A + + Q ++Y+SCNP +L RDL IL Sbjct: 380 --------GKEADVLVVDPPRKGCDEALLTTILEQRPKRVVYVSCNPATLARDLRILENG 431 Query: 338 THTIERLALFDQFPYTRHMECGVLLV 363 + + + D FP++ H E L Sbjct: 432 GYQTQEIQPVDMFPHSTHCEAVAWLE 457 >gi|229125919|ref|ZP_04254944.1| Uncharacterized RNA methyltransferase [Bacillus cereus BDRD-Cer4] gi|228657577|gb|EEL13390.1| Uncharacterized RNA methyltransferase [Bacillus cereus BDRD-Cer4] Length = 459 Score = 289 bits (740), Expect = 5e-76, Method: Composition-based stats. Identities = 81/384 (21%), Positives = 158/384 (41%), Gaps = 32/384 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ------IFRSEPIHYRMRAEFHIWHDG 55 L Y++QL +K D + Q + +++ + P HYR +++ + Sbjct: 88 GCQLQHLDYKEQLNQKRDIVVQAFEKYMKNSMEEKIRPTLGMENPWHYRNKSQLQVGRKD 147 Query: 56 DDLYHIMFDQQTKERMRIDYFMP-------GSLLINALMIEMMATIRLEPLLRAKLFQID 108 + + ++ Q + + + I + M + ++ ++ ++ +I E + + I Sbjct: 148 EKVITGLYKQNSHQLIDIAHCMIQHKATNEATKVVRRILEKLNVSIYNEKKQKGLVRTIV 207 Query: 109 YLTS-QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY- 166 T+ Q+ + VTLI + + ++ + A K +Q + + I D+ + Sbjct: 208 TRTAVQTGEVQVTLITTKEELPNKEQFIAEVQKQMPAVKSIMQNVNWRKTSVIFGDKTFK 267 Query: 167 --VDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGNGNF 223 E + L + +F Q N V + E AA ++++ YCG G Sbjct: 268 LAGKEVIQETLGDLSFELSARAFFQLNPEQTVVLYNEAKKAAALTGNENIVDAYCGVGTI 327 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 L LA V +++ ++ AR N + N K ++++ +E Sbjct: 328 GLWLANDAAEVRGMDVIPEAIADARKNAKRHGFTNTKYEAGKAEQWLPKWVKE------- 380 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILSTTHTI 341 +R I VDPPR+G DD + + ++Y+SCNP SL RD+ L ++ + Sbjct: 381 -----GWRPDVIVVDPPRTGCDDKLLETILKVKPKQVVYVSCNPSSLARDVQALMKSYEV 435 Query: 342 ERLALFDQFPYTRHMECGVLLVRK 365 E + D FP+T H+E V L K Sbjct: 436 EYVQPVDMFPHTAHVENVVRLNLK 459 >gi|289550385|ref|YP_003471289.1| RNA methyltransferase, TrmA family [Staphylococcus lugdunensis HKU09-01] gi|289179917|gb|ADC87162.1| RNA methyltransferase, TrmA family [Staphylococcus lugdunensis HKU09-01] Length = 461 Score = 289 bits (740), Expect = 5e-76, Method: Composition-based stats. Identities = 80/387 (20%), Positives = 149/387 (38%), Gaps = 38/387 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDG- 55 L YE QLA K +++ + V N I P YR +++ I D Sbjct: 87 GCQLQHMSYEAQLAMKKEQVVNLFHRKGQFTDTVINDTIGMDNPWRYRNKSQVPIGQDKM 146 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKL 104 + + Q++ + + +D + IN I + + +LR + Sbjct: 147 NHKIMGYYRQRSHDIIDMDSCLIQDKQHQDIMNHVKKWINEYHISIYNERTKKGVLRHLV 206 Query: 105 FQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR 164 + + T D+ +V + + +L+ A Q I ++ I + Sbjct: 207 IRTGHYT---DEIMVIFVTNGSKFKHANMLVEQLKQAFPNITSIKQNINNSHSNVIMGQQ 263 Query: 165 D---YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220 Y +++ + ++ + SF Q N+ + + + A Q +L+ YCG Sbjct: 264 SATLYGKDKIVDQLSDITFKISDQSFYQINSSQTEKLYQKAIDYAQLDGQEIVLDTYCGI 323 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G L +A V VE+ +++ AR N N ++N V +++ +RE Sbjct: 324 GTIGLYMAPVAKHVYGVEVVPSAIKDARQNALVNDLHNTTFVCGKAEDVIMDWQRE---- 379 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTT 338 + + VDPPR G + + + I+YISCNP + RD +L+T Sbjct: 380 --------GIQPDVVMVDPPRKGCEAQFIQTLLDLNPERIVYISCNPSTQQRDAHMLATQ 431 Query: 339 HTIERLALFDQFPYTRHMECGVLLVRK 365 + ++ + D FP T H+E L +K Sbjct: 432 YDLKEITPVDMFPQTTHIETVALFKKK 458 >gi|69246826|ref|ZP_00604135.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium DO] gi|257878457|ref|ZP_05658110.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium 1,230,933] gi|257882876|ref|ZP_05662529.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium 1,231,502] gi|257889346|ref|ZP_05668999.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium 1,231,410] gi|257894358|ref|ZP_05674011.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium 1,231,408] gi|258616021|ref|ZP_05713791.1| RNA methyltransferase [Enterococcus faecium DO] gi|260560044|ref|ZP_05832222.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium C68] gi|261207467|ref|ZP_05922153.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium TC 6] gi|289565878|ref|ZP_06446319.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium D344SRF] gi|293559994|ref|ZP_06676502.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium E1162] gi|294621045|ref|ZP_06700237.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium U0317] gi|314937822|ref|ZP_07845139.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium TX0133a04] gi|314941632|ref|ZP_07848512.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium TX0133C] gi|314948879|ref|ZP_07852248.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium TX0082] gi|314951003|ref|ZP_07854070.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium TX0133A] gi|314993004|ref|ZP_07858400.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium TX0133B] gi|314996451|ref|ZP_07861494.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium TX0133a01] gi|68195059|gb|EAN09521.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium DO] gi|257812685|gb|EEV41443.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium 1,230,933] gi|257818534|gb|EEV45862.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium 1,231,502] gi|257825706|gb|EEV52332.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium 1,231,410] gi|257830737|gb|EEV57344.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium 1,231,408] gi|260073879|gb|EEW62203.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium C68] gi|260078358|gb|EEW66063.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium TC 6] gi|289162338|gb|EFD10197.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium D344SRF] gi|291599359|gb|EFF30384.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium U0317] gi|291606082|gb|EFF35508.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium E1162] gi|313589433|gb|EFR68278.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium TX0133a01] gi|313592527|gb|EFR71372.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium TX0133B] gi|313596858|gb|EFR75703.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium TX0133A] gi|313599523|gb|EFR78366.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium TX0133C] gi|313642853|gb|EFS07433.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium TX0133a04] gi|313644669|gb|EFS09249.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium TX0082] Length = 457 Score = 289 bits (740), Expect = 5e-76, Method: Composition-based stats. Identities = 78/384 (20%), Positives = 155/384 (40%), Gaps = 40/384 (10%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGDDLY 59 L +YEQQL K ++ +M + +EP YR +A+ + L Sbjct: 88 LAHLKYEQQLVFKQKQVEHVMAKIAKMPEVPVLPTVGMAEPFGYRNKAQIPVRRIDGQLA 147 Query: 60 HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIR-----------LEPLLRAKLFQID 108 + + + + + I+ F +I+ + + ++ E LR + + Sbjct: 148 TGFYKKNSHDLVPIEDFYIQDPVIDQAIKVVRDILQRFQVRGYNEEKNEGQLRHIIIRRG 207 Query: 109 YLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR 164 + + + +VT + + +A E + + + + +K K+ R Sbjct: 208 HYSHEMMVVLVTRKEKFFKSKEIAEAIHEELPEVVSVIQNINEEKTNVILGDKEKVLYGR 267 Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNF 223 DY++++L YR SF Q N ++ + + + + D +++ Y G G Sbjct: 268 DYIEDQLLGK----TYRISAKSFYQVNTQQAEYLYQTAIEFAELDKKDIVIDAYSGIGTI 323 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 L LA D+V +E+ ++E A++N N + NV +++ + + Sbjct: 324 GLSLADRVDKVYGMEVIPEAIEDAQFNALNNKIENVHYEVGKAEKVMKKWQE-------- 375 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCRDLSILST-THT 340 + I VDPPR GLD + ++ P I+YISCNP + RD + + + Sbjct: 376 ----KGIKPSVIVVDPPRKGLDHHFIESAIEMSPERIVYISCNPATFARDAKLFAEAGYA 431 Query: 341 IERLALFDQFPYTRHMECGVLLVR 364 ++++ D FP T H+E V+ Sbjct: 432 VKKVQPVDLFPQTHHIELVASFVK 455 >gi|47092904|ref|ZP_00230686.1| RNA methyltransferase, TrmA family [Listeria monocytogenes str. 4b H7858] gi|255521018|ref|ZP_05388255.1| hypothetical RNA methyltransferase [Listeria monocytogenes FSL J1-175] gi|47018730|gb|EAL09481.1| RNA methyltransferase, TrmA family [Listeria monocytogenes str. 4b H7858] Length = 453 Score = 289 bits (739), Expect = 5e-76, Method: Composition-based stats. Identities = 73/383 (19%), Positives = 145/383 (37%), Gaps = 38/383 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWHDGDD 57 +L YE QLA K +++ + M N+ + P YR +++ + Sbjct: 84 GCSLQHLSYEGQLAFKRNQVEETMKRIGKLNVDVPETLGMENPWRYRNKSQVPVGFVNGK 143 Query: 58 LYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLFQ 106 L + +++ + + + + ++ E + +R + + Sbjct: 144 LTAGFYQKRSHAIIDMSTCLIHNEQGDFAVQKTREILAKYGTEPYDEQTGKGDIRHIMTR 203 Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWR---ECAIRLRDALHARKYQIQLIGRANKTKICLD 163 + T Q +VT + + L + + ++TK Sbjct: 204 FAHTTGQLMIVLVTTKERMPFKEEIVRELVEQLELTSIVQNINPHKTNVIFGDRTKTLWG 263 Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELYCGNGN 222 +D +++ + + + SF Q N + + + AA + +++ YCG G+ Sbjct: 264 KDIIEDTIH----GIRFAISARSFYQVNPIQTEVLYQQAIDAAELTGEETVIDAYCGIGS 319 Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282 SL LA+ V VEI +++ AR N N + N ++E A + Sbjct: 320 ISLCLAKKAKHVYGVEIVDQAIQDARANAELNELANTTFETGKAEEVIPAWYKA------ 373 Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILS-TTH 339 + VDPPR G D+ + + A ++Y+SCNP +L RD+ IL+ + Sbjct: 374 ------GIVADVLVVDPPRKGCDEKLLETILAMKPKKVVYVSCNPGTLARDMKILTDGGY 427 Query: 340 TIERLALFDQFPYTRHMECGVLL 362 +++ D FP T H+E +L Sbjct: 428 VAKKVQPVDMFPMTTHIEAVTVL 450 >gi|254829496|ref|ZP_05234183.1| RNA methyltransferase [Listeria monocytogenes FSL N3-165] gi|258601911|gb|EEW15236.1| RNA methyltransferase [Listeria monocytogenes FSL N3-165] Length = 453 Score = 289 bits (739), Expect = 5e-76, Method: Composition-based stats. Identities = 69/383 (18%), Positives = 145/383 (37%), Gaps = 38/383 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWHDGDD 57 +L Y+ QL K +++ + M N+++ P YR +++ + Sbjct: 84 GCSLQHLSYDGQLEFKRNQVEETMKRIGKLNVEVPETLGMENPWRYRNKSQVPVGFVNGK 143 Query: 58 LYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLFQ 106 L + +++ + + + + ++ E + +R + + Sbjct: 144 LTAGFYQKRSHAIIDMSTCLIHNEQGDFAVQKTREILVKYGTEPYDEQTGKGDIRHIMTR 203 Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWREC---AIRLRDALHARKYQIQLIGRANKTKICLD 163 + T Q +VT + + L + + ++TK Sbjct: 204 FAHTTGQLMIVLVTTKERMPFKEEIVRDLVEQLELTSIVQNINPHKTNVIFGDRTKTLWG 263 Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELYCGNGN 222 +D +++ + + + SF Q N + + + AA + +++ YCG G+ Sbjct: 264 KDIIEDTIH----GIRFAISARSFYQVNPLQTEVLYQQAIDAAELTGEETVIDAYCGIGS 319 Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282 SL LA+ V VEI +++ AR N N + N ++E + + Sbjct: 320 ISLCLAKKAKHVYGVEIVDQAIQDARANAELNELANTTFETGKAEEVIPSWYKA------ 373 Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILS-TTH 339 + VDPPR G D+ + + A ++Y+SCNP +L RD+ +L+ + Sbjct: 374 ------GIVADVLVVDPPRKGCDEKLLETILAMKPKKVVYVSCNPGTLARDMKLLTDGGY 427 Query: 340 TIERLALFDQFPYTRHMECGVLL 362 +++ D FP T H+E +L Sbjct: 428 VAKKVQPVDMFPMTTHIEAVTVL 450 >gi|323693228|ref|ZP_08107446.1| RNA methyltransferase [Clostridium symbiosum WAL-14673] gi|323502711|gb|EGB18555.1| RNA methyltransferase [Clostridium symbiosum WAL-14673] Length = 576 Score = 289 bits (739), Expect = 6e-76, Method: Composition-based stats. Identities = 85/389 (21%), Positives = 145/389 (37%), Gaps = 42/389 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHD-GDDLYH 60 LL Y+QQLAEK R+ +++ I EP+HYR + HD + Sbjct: 207 GCQLLHLPYKQQLAEKQKRMEELLKGICPVKPIIGMKEPLHYRNKVHAVFGHDRKGNPLS 266 Query: 61 IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-----------LRAKLFQIDY 109 ++ + T + ++ + + ++ + ++ + LR L + + Sbjct: 267 GVYKEGTHILVPVEKCLIEDEKADEIIGTIRGMLKSFKIRTFDEDTGYGFLRHVLVRRGF 326 Query: 110 LTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGR-------ANKTKICL 162 T + +VT + + LR+ IQ I +K + Sbjct: 327 ATGEIMVVLVTA---SPVFPSKNNFVKALREKHPEITTIIQNINNRSTSMVLGDKEHVLY 383 Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNG 221 R Y+++ L L +R SF Q N+ + L A + L+ YCG G Sbjct: 384 GRGYIEDVLC----GLRFRISSKSFYQVNSAQTELLYNKALQLAGLTGKEKALDAYCGIG 439 Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281 L+ +R V+ VE+ +V A N N V N++ + F M Sbjct: 440 TIGLIASRKAGEVIGVELNPDAVRDAVQNAKMNDVKNIQFYCNDAGRFIVNMAE------ 493 Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLS-ILSTT 338 + I +DPPRSG + V ++Y+SC P++L RDL + Sbjct: 494 ------KGEKVDVILMDPPRSGSTKEFIDAVAKMGPERVVYVSCGPETLVRDLRWFMGNG 547 Query: 339 HTIERLALFDQFPYTRHMECGVLLVRKPS 367 + D F T H+E VL+ RK + Sbjct: 548 YRAVEAWPVDMFGGTGHVETVVLIQRKDT 576 >gi|254826004|ref|ZP_05231005.1| RNA methyltransferase [Listeria monocytogenes FSL J1-194] gi|293595243|gb|EFG03004.1| RNA methyltransferase [Listeria monocytogenes FSL J1-194] Length = 453 Score = 289 bits (739), Expect = 6e-76, Method: Composition-based stats. Identities = 73/383 (19%), Positives = 144/383 (37%), Gaps = 38/383 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWHDGDD 57 +L YE QLA K +++ + M N+ + P YR +++ + Sbjct: 84 GCSLQHLSYEGQLAFKRNQVEETMKRIGKLNVDVPETLGMENPWRYRNKSQVPVGFVNGK 143 Query: 58 LYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLFQ 106 L + +++ + + + + ++ E +R + + Sbjct: 144 LTAGFYQKRSHAIIDMSTCLIHNEQGDFAVQKTREILAKYGTEPYDEQTGRGDIRHIMTR 203 Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWR---ECAIRLRDALHARKYQIQLIGRANKTKICLD 163 + T Q +VT + + L + + ++TK Sbjct: 204 FAHTTGQLMIVLVTTKERMPFKEEIVRELVEQLELTSIVQNINPHKTNVIFGDRTKTLWG 263 Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELYCGNGN 222 +D +++ + + + SF Q N + + + AA + +++ YCG G+ Sbjct: 264 KDIIEDTIH----GIRFAISARSFYQVNPLQTEVLYQQAIDAAELTGEETVIDAYCGIGS 319 Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282 SL LA+ V VEI +++ AR N N + N ++E A + Sbjct: 320 ISLCLAKKAKHVYGVEIVDQAIQDARANAELNELANTTFETGKAEEVIPAWYKA------ 373 Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILS-TTH 339 + VDPPR G D+ + + A ++Y+SCNP +L RD+ IL+ + Sbjct: 374 ------GIVADVLVVDPPRKGCDEKLLETILAMKPKKVVYVSCNPGTLARDMKILTDGGY 427 Query: 340 TIERLALFDQFPYTRHMECGVLL 362 +++ D FP T H+E +L Sbjct: 428 VAKKVQPVDMFPMTTHIEAVTVL 450 >gi|315660149|ref|ZP_07913006.1| 23S rRNA (uracil-5-)-methyltransferase [Staphylococcus lugdunensis M23590] gi|315494830|gb|EFU83168.1| 23S rRNA (uracil-5-)-methyltransferase [Staphylococcus lugdunensis M23590] Length = 456 Score = 289 bits (739), Expect = 6e-76, Method: Composition-based stats. Identities = 80/387 (20%), Positives = 149/387 (38%), Gaps = 38/387 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDG- 55 L YE QLA K +++ + V N I P YR +++ I D Sbjct: 82 GCQLQHMSYEAQLAMKKEQVVNLFHRKGQFTDTVINDTIGMDNPWRYRNKSQVPIGQDKM 141 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKL 104 + + Q++ + + +D + IN I + + +LR + Sbjct: 142 NHKIMGYYRQRSHDIIDMDSCLIQDKQHQDIMNHVKKWINEYHISIYNERTKKGVLRHLV 201 Query: 105 FQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR 164 + + T D+ +V + + +L+ A Q I ++ I + Sbjct: 202 IRTGHYT---DEIMVIFVTNGSKFKHANMLVEQLKQAFPNITSIKQNINNSHSNVIMGQQ 258 Query: 165 D---YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220 Y +++ + ++ + SF Q N+ + + + A Q +L+ YCG Sbjct: 259 SATLYGKDKIVDQLSDITFKISDQSFYQINSSQTEKLYQKAIDYAQLDGQEIVLDTYCGI 318 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G L +A V VE+ +++ AR N N ++N V +++ +RE Sbjct: 319 GTIGLYIAPVAKHVYGVEVVPSAIKDARQNALVNDLHNTTFVCGKAEDVIMDWQRE---- 374 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTT 338 + + VDPPR G + + + I+YISCNP + RD +L+T Sbjct: 375 --------GIQPDVVMVDPPRKGCEAQFIQTLLDLNPERIVYISCNPSTQQRDAHMLATQ 426 Query: 339 HTIERLALFDQFPYTRHMECGVLLVRK 365 + ++ + D FP T H+E L +K Sbjct: 427 YDLKEITPVDMFPQTTHIETVALFKKK 453 >gi|304436318|ref|ZP_07396296.1| 23S rRNA (uracil-5-)-methyltransferase [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304370723|gb|EFM24370.1| 23S rRNA (uracil-5-)-methyltransferase [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 469 Score = 289 bits (739), Expect = 6e-76, Method: Composition-based stats. Identities = 81/383 (21%), Positives = 141/383 (36%), Gaps = 33/383 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-VPNLQIFRS----EPIHYRMRAEFHIWHDGD 56 L Y QL K ++ + +P++ + + P +YR + +F + Sbjct: 94 GCQLQHLSYAAQLRAKRQQVIDALSHIGKLPHVSVRETLAAQSPWNYRNKMQFPVGLAKG 153 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMI-------EMMATIRLEPLLRAKLFQIDY 109 + F Q + + + NAL ++ + E + L I Sbjct: 154 KIVVGCFAQGSHTIIDTENCHIQREPNNALANAVRAIAAQLRIPVYNEDTHKGILRHIVG 213 Query: 110 LTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD---- 165 Q+ + ++ +E LR+ L Q I + + RD Sbjct: 214 RVGQNGDLMAVIVTASKQLPRAKEFVRLLREHLPNLVSVHQNIQTYR-NNVIMGRDTVLL 272 Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNFS 224 + + L + SF Q N + E L+ A +++ YCG G + Sbjct: 273 WGKPTILDGLGRLHFHISPRSFFQVNTQQAERLYEQALSYADLHGTETVIDAYCGTGTIT 332 Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284 L LA+ +V +EI +P++ AR N NHV N + + + + A+ + Sbjct: 333 LFLAQRARKVYGIEIVQPAILDARKNARDNHVKNAEFIVGDATKVMPALYK--------- 383 Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILST-THTI 341 R + VDPPR+G + I+Y+SCNP +L RDL+IL + Sbjct: 384 ---QGIRPDVVVVDPPRAGCTPTVLQTFADMKPQRIVYVSCNPATLARDLAILKEFGYHA 440 Query: 342 ERLALFDQFPYTRHMECGVLLVR 364 + + D FP T H+E L R Sbjct: 441 QEVQPVDLFPQTSHVETITKLSR 463 >gi|168204451|ref|ZP_02630456.1| 23S rRNA -methyltransferase RumA [Clostridium perfringens E str. JGS1987] gi|170664028|gb|EDT16711.1| 23S rRNA -methyltransferase RumA [Clostridium perfringens E str. JGS1987] Length = 455 Score = 289 bits (739), Expect = 6e-76, Method: Composition-based stats. Identities = 75/391 (19%), Positives = 149/391 (38%), Gaps = 43/391 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI-----FRSEPIHYRMRAEFHIWHDGD 56 L Y+ QL K +R++ + + I P YR + + I Sbjct: 81 GCKLQHASYKAQLDFKWERVKDCVSKIGKLDPSIVKYPLGMENPWRYRNKVQLPIGLING 140 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLL---INALMIEMMATIRLEP-----------LLRA 102 ++ F ++ + + ++ + + + L E + + P ++R Sbjct: 141 EVKIGFFAPRSHDIIDMESCLIQDEIGDKVVKLTREWIEKFNIRPYNVDGEYDEKGIVRH 200 Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162 + + + T++ +VT + + + + ++ + K IQ I + KT + L Sbjct: 201 IMIRRGFTTNEVMVVLVTNGENIPHKEEFVDLMVK---NIPGIKSVIQNIN-SKKTNVIL 256 Query: 163 DRD----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELY 217 + + ++ ++ + SF Q N + L A ++ + Y Sbjct: 257 GLESKTLWGEDTISDYIGDFRFNISPLSFFQVNPIQTEVLYGKALEYANLTGNEEVFDAY 316 Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277 CG G +L L++ +V VEI +++ A N N V NV+ S+ Sbjct: 317 CGTGTITLFLSQKAKKVYGVEIIPQAIDNAWINAKENKVENVEFFVGESEVV-------- 368 Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSIL 335 + D+ + + VDPPR G D + + I+Y+SC+P +L RDL +L Sbjct: 369 ----IPDLINKGVKADVVVVDPPRKGCDKKLLDAITNIDAKKIVYVSCDPSTLGRDLKVL 424 Query: 336 ST-THTIERLALFDQFPYTRHMECGVLLVRK 365 + + D FP T H+E L++K Sbjct: 425 EENGYKTLEVQPVDMFPNTSHVENVAKLIKK 455 >gi|307288671|ref|ZP_07568652.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX0109] gi|306500425|gb|EFM69761.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX0109] gi|315165278|gb|EFU09295.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX1302] Length = 456 Score = 289 bits (739), Expect = 6e-76, Method: Composition-based stats. Identities = 80/389 (20%), Positives = 148/389 (38%), Gaps = 41/389 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54 L Y+ QL K D L+Q + F+ N Q I P +YR +A+F + Sbjct: 84 GCQLQHLAYKAQLDFKKDLLKQALNKFKPANYQNYELRKTIGMENPWNYRNKAQFQLRQI 143 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAK 103 + ++ + + + ID + L+N + + + + R Sbjct: 144 DGQVEAGLYQADSHQLVPIDNCLVQQPATTKVMNTLVDLLNDFQLPIYDERKNSGIFRTL 203 Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD 163 + ++ Q+ + V I + + + L +Q + KT + + Sbjct: 204 MVRVGI---QTGEVQVVFITQSKKFPQKEKMVRAINEQLPEVVSIMQNVQN-KKTSLVMG 259 Query: 164 RD----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYC 218 D + E + +++ +F Q N + E + A +++ YC Sbjct: 260 DDTLHLWGKESIEEHINDVVFDLSPRAFFQLNPEQTEVLYNEGIKALDLQPNETVVDAYC 319 Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278 G G L LA+ +V ++ +++ AR+N V N ++++ +E Sbjct: 320 GVGTIGLNLAKQAHQVRGMDTIPAAIDDARFNAKRLGVTNTHYAVGTAEDLLPKWFKE-- 377 Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILS 336 ++ I VDPPR+GLD + + P ++YISCN +L RDL L+ Sbjct: 378 ----------GFKPDAIVVDPPRTGLDRKLLTALLKQPPKKMVYISCNVSTLARDLVQLA 427 Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVRK 365 + ++ L D FP T E V L RK Sbjct: 428 KVYQVDYLQSVDMFPQTARCEVVVKLTRK 456 >gi|311033023|ref|ZP_07711113.1| YefA [Bacillus sp. m3-13] Length = 455 Score = 288 bits (738), Expect = 7e-76, Method: Composition-based stats. Identities = 74/389 (19%), Positives = 149/389 (38%), Gaps = 41/389 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRS-EPIHYRMRAEFHIWHDG 55 L YE QL K +++ ++ + + P YR +A+ I Sbjct: 83 GCQLQHLSYEGQLVAKQKQVKDVLERIGHLKDVPVHPVLGMDHNPWRYRNKAQVPIGERE 142 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKL 104 L + Q++ E + + + + + ++ + + +LR + Sbjct: 143 GGLIAGFYQQRSHEIIDMKECLIQQEINDRVVQTVREICDKHDVRAYNEKTHKGVLRHVM 202 Query: 105 FQIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKI 160 + +T + ++T + R + D E ++ + + + ++T++ Sbjct: 203 ARYGLVTGEVMIVLITRTPDIPNRRAIVDEITEALPEVKSVVQNVNTKKTNVIFGDETRV 262 Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCG 219 +Y+ + + + + SF Q N + + L A + +++ YCG Sbjct: 263 LWGNEYIYDFIG----DIKFAISARSFYQVNPEQTKVLYDKALEYAELTGEESVIDAYCG 318 Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279 G SL LA+ +V VEI ++E A+ N N + N + ++ +E Sbjct: 319 IGTISLFLAQKAKKVFGVEIVPEAIEDAKRNAELNEITNAEFAVGEAEVVIPKWYKE--- 375 Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILS- 336 + VDPPR G D++ + + ++Y+SCNP +L RDL +L Sbjct: 376 ---------GNTADVLVVDPPRKGCDESLLKTILEMKPKKVVYVSCNPATLARDLRVLED 426 Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVRK 365 + + D FP+T H+EC LV K Sbjct: 427 GGYKTVEVQPVDMFPHTVHVECVSHLVLK 455 >gi|229108092|ref|ZP_04237717.1| Uncharacterized RNA methyltransferase [Bacillus cereus Rock1-15] gi|228675367|gb|EEL30586.1| Uncharacterized RNA methyltransferase [Bacillus cereus Rock1-15] Length = 459 Score = 288 bits (738), Expect = 7e-76, Method: Composition-based stats. Identities = 81/384 (21%), Positives = 157/384 (40%), Gaps = 32/384 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ------IFRSEPIHYRMRAEFHIWHDG 55 L Y++QL +K D + Q + +++ + P HYR +++ + Sbjct: 88 GCQLQHLDYKEQLNQKRDIVVQAFEKYMKNSMEEKIRPTLGMENPWHYRNKSQLQVGRKD 147 Query: 56 DDLYHIMFDQQTKERMRIDYFMP-------GSLLINALMIEMMATIRLEPLLRAKLFQID 108 + + ++ Q + + + I + M + ++ ++ ++ +I E + + I Sbjct: 148 EKVITGLYKQNSHQLIDIAHCMIQHKATNEATKVVRRILEKLNVSIYNEKKQKGLVRTIV 207 Query: 109 YLTS-QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY- 166 T+ Q+ + VTLI + + ++ + A K +Q + + I D+ + Sbjct: 208 TRTAVQTGEVQVTLITTKEELPNKEQFIAEVQKQMPAVKSIMQNVNWRKTSVIFGDKTFK 267 Query: 167 --VDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGNGNF 223 E + L + +F Q N V + E AA +++ YCG G Sbjct: 268 LAGKEVIQETLGDLSFELSARAFFQLNPEQTVVLYNEAKKAAALTGNEKIVDAYCGVGTI 327 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 L LA V +++ ++ AR N + N K ++++ +E Sbjct: 328 GLWLANDAAEVRGMDVIPEAIADARKNAKRHGFTNTKYEAGKAEQWLPKWVKE------- 380 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILSTTHTI 341 +R I VDPPR+G DD + + ++Y+SCNP SL RD+ L ++ + Sbjct: 381 -----GWRPDVIVVDPPRTGCDDKLLETILKVKPKQVVYVSCNPSSLARDVQALMKSYEV 435 Query: 342 ERLALFDQFPYTRHMECGVLLVRK 365 E + D FP+T H+E V L K Sbjct: 436 EYVQPVDMFPHTAHVENVVRLNLK 459 >gi|255657345|ref|ZP_05402754.1| putative RNA methyltransferase [Clostridium difficile QCD-23m63] Length = 453 Score = 288 bits (738), Expect = 7e-76, Method: Composition-based stats. Identities = 81/388 (20%), Positives = 152/388 (39%), Gaps = 41/388 (10%) Query: 2 SGTLLID-QYEQQLAEKVDRLRQMMLAFQVPNL-----QIFRSEPIHYRMRAEFHIWHDG 55 G + D Y +QL K + ++Q++ I P YR +A+F I + Sbjct: 80 GGCQIQDLDYNKQLEMKTNEVKQVLSRIGKLEDVEVHDTIGMDNPYRYRNKAQFPIQKNN 139 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGSLL-----------INALMIEMMATIRLEPLLRAKL 104 + ++T + + + + + I A + + L+R + Sbjct: 140 GVPIIGFYKKKTHDVISTEKCVIQHEINDKIVKIIKTYIRAYKVSIYDEKTHTGLIRHLV 199 Query: 105 FQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR 164 +I + T + +V +E A L++ + K + + + + T L + Sbjct: 200 TKIGFTTKEVMVVLVANGNKLPY---LKELASVLKENIPGFKTLVVNVNQKD-TNAILGK 255 Query: 165 D----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCG 219 + Y D ++ L++ SF Q N + + L A + ++YCG Sbjct: 256 ENIVIYGDGKINDYIGDLVFEISPLSFFQVNPVQTKVLYDKALEYADLNETDTVFDIYCG 315 Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279 G SL LA+ +V +EI +++ A+ N N+++N + ++E M RE Sbjct: 316 IGTISLFLAQKAKKVYGIEIIDDAIKDAKINAKLNNMHNAEFYVGKAEEIVPKMYRE--- 372 Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILS- 336 + VDPPR G D+ + + + I+Y+SCNP +L RDL L+ Sbjct: 373 ---------GKTANVVVVDPPRKGCDEKVLETIVSMSPERIVYVSCNPSTLARDLDYLNV 423 Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVR 364 D FP++ H+E L+ R Sbjct: 424 HGFKCVEAQPVDMFPHSTHVETIALIQR 451 >gi|168185623|ref|ZP_02620258.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum C str. Eklund] gi|169296454|gb|EDS78587.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum C str. Eklund] Length = 472 Score = 288 bits (738), Expect = 7e-76, Method: Composition-based stats. Identities = 77/404 (19%), Positives = 156/404 (38%), Gaps = 56/404 (13%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL---------------------QIFRSEP 40 ++ YE QL K +R++ + + + P Sbjct: 85 GCSIQHFNYEAQLEFKKNRVKDCLERIGKLEILTNNEETDKSNCENEGIILHNTLGMKNP 144 Query: 41 IHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLL---INALMIEMMATIRLE 97 YR + + + + ++ + ++ + + ++ + + +L+ E M ++ Sbjct: 145 YRYRNKVQLPVGEENGEIKVGFYAPRSHDIIDMEICHIQDEVGDTVVSLIKEWMKKYNIK 204 Query: 98 P--------LLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQI 149 P L+R + + + T++ IVT + E ++ D + + I Sbjct: 205 PYNEQKNTGLVRHIMVRRGFNTNEVMIVIVTRTNELPYKEELIELILKKIDGITSIVQNI 264 Query: 150 QLIGRANKTKICLD----RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA 205 + +T + L Y + ++ + SF Q N + L Sbjct: 265 N----SKRTNVILGLKNINLYGKDYISDYIGEFKFNISPLSFFQVNPVQTEVLYNKALEY 320 Query: 206 TKGIQGDLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRM 264 +++ + YCG G SL L+++ +V VEI ++E A+ N N+V+N + + Sbjct: 321 AALTGNEVVFDAYCGTGTISLFLSKNAKKVYGVEIVDAAIENAKINAEENNVDNAEFIVG 380 Query: 265 SSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYIS 322 S+E + + + + VDPPR G D A + + I+Y+S Sbjct: 381 KSEEVIPNLIK------------QGIKADVVVVDPPRKGCDKALLDAIGNMKPDRIVYVS 428 Query: 323 CNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVRK 365 C+P +L RDL+IL + + + D FP T H+EC V L ++ Sbjct: 429 CDPGTLARDLAILDELGYETKEVQPVDMFPQTGHVECVVRLNKR 472 >gi|254853661|ref|ZP_05243009.1| RNA methyltransferase [Listeria monocytogenes FSL R2-503] gi|300765947|ref|ZP_07075919.1| TrmA family RNA methyltransferase [Listeria monocytogenes FSL N1-017] gi|258607040|gb|EEW19648.1| RNA methyltransferase [Listeria monocytogenes FSL R2-503] gi|300513333|gb|EFK40408.1| TrmA family RNA methyltransferase [Listeria monocytogenes FSL N1-017] Length = 453 Score = 288 bits (738), Expect = 7e-76, Method: Composition-based stats. Identities = 73/383 (19%), Positives = 144/383 (37%), Gaps = 38/383 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWHDGDD 57 +L YE QLA K +++ + M N+ + P YR +++ + Sbjct: 84 GCSLQHLSYEGQLAFKRNQVEETMKRIGKLNVDVPETLGMENPWRYRNKSQVPVGFVNGK 143 Query: 58 LYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLFQ 106 L + +++ + + + + ++ E +R + + Sbjct: 144 LTAGFYQKRSHAIIDMSTCLIHNEQGDFAVQKTREILAKYGTEPYDEQTGRGDIRHIMTR 203 Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWR---ECAIRLRDALHARKYQIQLIGRANKTKICLD 163 + T Q +VT + + L + + ++TK Sbjct: 204 FAHTTGQLMIVLVTTKERMPFKEEIVRELVEQLELTSIVQNINPHKTNVIFGDRTKTLWG 263 Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELYCGNGN 222 +D +++ + + + SF Q N + + + AA + +++ YCG G+ Sbjct: 264 KDIIEDTIH----GIRFAISARSFYQVNPLQTEVLYQQAIDAAELTGEETVIDAYCGIGS 319 Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282 SL LA+ V VEI +++ AR N N + N ++E A + Sbjct: 320 ISLCLAKKAKHVYGVEIVDQAIQDARANAELNELANTTFETGKAEEVIPAWYKA------ 373 Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILS-TTH 339 + VDPPR G D+ + + A ++Y+SCNP +L RD+ IL+ + Sbjct: 374 ------GIVADVLVVDPPRKGCDEKLLETILAMKPKKVVYVSCNPGTLARDMKILTDGGY 427 Query: 340 TIERLALFDQFPYTRHMECGVLL 362 +++ D FP T H+E +L Sbjct: 428 VAKKVQPVDMFPMTTHIEAVTVL 450 >gi|257884417|ref|ZP_05664070.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium 1,231,501] gi|257820255|gb|EEV47403.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium 1,231,501] Length = 457 Score = 288 bits (738), Expect = 7e-76, Method: Composition-based stats. Identities = 78/384 (20%), Positives = 155/384 (40%), Gaps = 40/384 (10%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGDDLY 59 L +YEQQL K ++ +M + +EP YR +A+ + L Sbjct: 88 LAHLKYEQQLVFKQKQVEHVMAKIAKMSEIPVLPTVGMAEPFGYRNKAQIPVRRIDGQLA 147 Query: 60 HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIR-----------LEPLLRAKLFQID 108 + + + + + I+ F +I+ + + ++ E LR + + Sbjct: 148 TGFYKKNSHDLVPIEDFYIQDPVIDQAIKVVRDILQRFQVRGYNEKKNEGQLRHIIIRRG 207 Query: 109 YLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR 164 + + + +VT + + +A E + + + + +K K+ R Sbjct: 208 HYSHEMMVVLVTRKEKFFKSKEIAEAIHEELPEVVSVIQNINEEKTNVILGDKEKVLYGR 267 Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNF 223 DY++++L YR SF Q N ++ + + + + D +++ Y G G Sbjct: 268 DYIEDQLLGK----TYRISAKSFYQVNTQQAEYLYQTAIKFAELDKKDIVIDAYSGIGTI 323 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 L LA D+V +E+ ++E A++N N + NV +++ + + Sbjct: 324 GLSLADKVDKVYGMEVIPEAIEDAQFNALNNKIENVYYEVGKAEKVMKKWQE-------- 375 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCRDLSILST-THT 340 + I VDPPR GLD + ++ P I+YISCNP + RD + + + Sbjct: 376 ----KGIKPSVIVVDPPRKGLDHHFIESAIEMSPERIVYISCNPATFARDAKLFAEAGYA 431 Query: 341 IERLALFDQFPYTRHMECGVLLVR 364 ++++ D FP T H+E V+ Sbjct: 432 VKKVQPVDLFPQTHHIELVASFVK 455 >gi|295108206|emb|CBL22159.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Ruminococcus obeum A2-162] Length = 441 Score = 288 bits (738), Expect = 8e-76, Method: Composition-based stats. Identities = 89/388 (22%), Positives = 146/388 (37%), Gaps = 42/388 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDL-YH 60 LL YE+QL +K + + +++ + I +P HYR + H D Sbjct: 72 GCQLLDMPYEKQLKKKQNHVSKLVQPYCRTEKIIGMEDPFHYRNKVHAVFGHRKDGTVIS 131 Query: 61 IMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLFQIDY 109 + Q T + +D + L+ + I+ L R L + Y Sbjct: 132 GTYQQGTHFIVPVDECLIEDKRADAIICDIRGLLKSFKIKTYNEDTGYGLFRHVLIRTGY 191 Query: 110 LTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGR-------ANKTKICL 162 S Q +V L+ + + LR I + K + Sbjct: 192 ---HSGQVMVVLVLGSPILPSKNNFVKALRKLHPEITTIILNVNDQKTSMVLGEKETVLY 248 Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNG 221 + Y+++ L +R SF Q N + + A + +++ YCG G Sbjct: 249 GKGYIEDELC----GHTFRISSKSFYQVNPVQTEKLYAKAIELAGLTGKERVIDAYCGIG 304 Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281 L+ + V++VE+ +V+ A N N + NV+ R + F + M E E Sbjct: 305 TIGLIASDKAKEVISVELNPDAVKDAIVNAKRNGIRNVRFYRNDASVFMRQMADEGE--- 361 Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST-T 338 +F+DPPRSG D+ + V I+Y+SC P +L RDL L+ Sbjct: 362 ---------SADVVFMDPPRSGSDEKFLSSVVTLHPKRIVYVSCEPTTLARDLKYLTRHG 412 Query: 339 HTIERLALFDQFPYTRHMECGVLLVRKP 366 + + FD FP T H+E VLL RK Sbjct: 413 YRVRTAVPFDMFPATEHVETAVLLQRKN 440 >gi|315150202|gb|EFT94218.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX0012] Length = 456 Score = 288 bits (738), Expect = 8e-76, Method: Composition-based stats. Identities = 80/389 (20%), Positives = 147/389 (37%), Gaps = 41/389 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54 L Y+ QL K D L+Q + F+ N Q I P +YR +A+F + Sbjct: 84 GCQLQHLAYKAQLDFKKDLLKQALNKFKPVNYQNYELRKTIGMENPWNYRNKAQFQLRQI 143 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAK 103 + ++ + + + ID + L+N + + + + R Sbjct: 144 DGQVEAGLYQADSHQLVPIDNCLVQQPATTKVMNTLVDLLNDFQLPIYDERKNSGIFRTL 203 Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD 163 + ++ Q+ + V I + + + L +Q + KT + + Sbjct: 204 MVRVGI---QTGEVQVVFITQSKKFPQKEKMVRAINEQLPEVVSIMQNVQN-KKTSLVMG 259 Query: 164 RD----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYC 218 D + E + +++ +F Q N + E + A +++ YC Sbjct: 260 DDTLHLWGKESIEEHINDVVFDLSPRAFFQLNPEQTEILYNEGIKALDLQPNETVVDAYC 319 Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278 G G L LA+ +V ++ +++ AR+N V N ++++ +E Sbjct: 320 GVGTIGLSLAKQAHQVRGMDTIPAAIDDARFNAKRLGVTNTHYAVGTAEDLLPKWFKE-- 377 Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILS 336 ++ I VDPPR+GLD + + P ++YISCN +L RDL L+ Sbjct: 378 ----------GFKPDAIVVDPPRTGLDRKLLTALLKQPPKKMVYISCNVSTLARDLVQLA 427 Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVRK 365 + + L D FP T E V L RK Sbjct: 428 KVYQVNYLQSVDMFPQTARCEVVVKLTRK 456 >gi|315143898|gb|EFT87914.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX2141] Length = 456 Score = 288 bits (738), Expect = 8e-76, Method: Composition-based stats. Identities = 79/389 (20%), Positives = 147/389 (37%), Gaps = 41/389 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54 L Y+ QL K D L+Q + F+ N Q I P +YR +A+F + Sbjct: 84 GCQLQHLAYKAQLDFKKDLLKQALNKFKPANYQNYELRKTIGMENPWNYRNKAQFQLRQI 143 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAK 103 + ++ + + + ID + L+N + + + + R Sbjct: 144 DGQVEAGLYQADSHQLVPIDNCLVQQPATTKVMNTLVDLLNDFQLPIYDERKNSGIFRTL 203 Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD 163 + ++ Q+ + V I + + + L +Q + KT + + Sbjct: 204 MVRVGI---QTGEVQVVFITQSQKFPQKEKMVRAINEQLPEVVSIMQNVQN-KKTSLVMG 259 Query: 164 RD----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYC 218 D + E + +++ +F Q N + E + +++ YC Sbjct: 260 DDTLHLWGKESIEEHINDVVFDLSPRAFFQLNPEQTEVLYNEGIKVLDLQPNETVVDAYC 319 Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278 G G L LA+ +V ++ +++ AR+N V N ++++ +E Sbjct: 320 GVGTIGLSLAKQAHQVRGMDTIPAAIDDARFNAKRLGVTNTHYAVGTAEDLLPKWFKE-- 377 Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILS 336 ++ I VDPPR+GLD + + P ++YISCN +L RDL L+ Sbjct: 378 ----------GFKPDAIVVDPPRTGLDRKLLTALLKQPPKKMVYISCNVSTLARDLVQLA 427 Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVRK 365 + ++ L D FP T E V L RK Sbjct: 428 KVYQVDYLQSVDMFPQTARCEVVVKLTRK 456 >gi|227551663|ref|ZP_03981712.1| TrmA family tRNA (uracil-5-)-methyltransferase [Enterococcus faecium TX1330] gi|257887201|ref|ZP_05666854.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium 1,141,733] gi|257895737|ref|ZP_05675390.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium Com12] gi|293377654|ref|ZP_06623843.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium PC4.1] gi|227179226|gb|EEI60198.1| TrmA family tRNA (uracil-5-)-methyltransferase [Enterococcus faecium TX1330] gi|257823255|gb|EEV50187.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium 1,141,733] gi|257832302|gb|EEV58723.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium Com12] gi|292643654|gb|EFF61775.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium PC4.1] Length = 457 Score = 288 bits (738), Expect = 8e-76, Method: Composition-based stats. Identities = 78/384 (20%), Positives = 155/384 (40%), Gaps = 40/384 (10%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGDDLY 59 L +YEQQL K ++ +M + +EP YR +A+ + L Sbjct: 88 LAHLKYEQQLVFKQKQVEHVMAKIAKMSEIPVLPTVGMAEPFGYRNKAQIPVRRIDGQLA 147 Query: 60 HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIR-----------LEPLLRAKLFQID 108 + + + + + I+ F +I+ + + ++ E LR + + Sbjct: 148 TGFYKKNSHDLVPIEDFYIQDPVIDQAIKVVRDILQRFQVRGYNEEKNEGQLRHIIIRRG 207 Query: 109 YLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR 164 + + + +VT + + +A E + + + + +K K+ R Sbjct: 208 HYSHEMMVVLVTRKEKFFKSKEIAEAIHEELPEVVSVIQNINEEKTNVILGDKEKVLYGR 267 Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNF 223 DY++++L YR SF Q N ++ + + + + D +++ Y G G Sbjct: 268 DYIEDQLLGK----TYRISAKSFYQVNTQQAEYLYQTAIKFAELDKKDIVIDAYSGIGTI 323 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 L LA D+V +E+ ++E A++N N + NV +++ + + Sbjct: 324 GLSLADKVDKVYGMEVIPEAIEDAQFNALNNKIENVYYEVGKAEKVMKKWQE-------- 375 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCRDLSILST-THT 340 + I VDPPR GLD + ++ P I+YISCNP + RD + + + Sbjct: 376 ----KGIKPSVIVVDPPRKGLDHHFIESAIEMSPERIVYISCNPATFARDAKLFAEAGYA 431 Query: 341 IERLALFDQFPYTRHMECGVLLVR 364 ++++ D FP T H+E V+ Sbjct: 432 VKKVQPVDLFPQTHHIELVASFVK 455 >gi|251778308|ref|ZP_04821228.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243082623|gb|EES48513.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 455 Score = 288 bits (738), Expect = 8e-76, Method: Composition-based stats. Identities = 73/392 (18%), Positives = 157/392 (40%), Gaps = 44/392 (11%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSE-PIHYRMRAEFHIWHDG 55 ++ Y++QL K +R++ + + + P YR + + I Sbjct: 80 GCSIQHMNYKKQLDFKWERVKDCIEKIGGLSKDLVKYPLGMGPNPYRYRNKVQLPIGKIN 139 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGSLL---INALMIEMMATIRLEP-----------LLR 101 +++ + ++ + + +DY + + + + + + +EP +L+ Sbjct: 140 NEVVIGFYAPRSHDIIDLDYCLIQDKIADNVANITKQWIKKNNIEPATLDGQFNPNGILK 199 Query: 102 AKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161 + + + ++D+ +V L+ E + + + K + I N T + Sbjct: 200 HLMIRRGF---KTDEVMVVLVATTSNIPKLDEFKHIILENIKGIKSIVLNINPKN-TNVI 255 Query: 162 LDRD----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLEL 216 L + Y ++ + + SF Q N + L + + + + + Sbjct: 256 LGEECITLYGEDTIKDYIGEFKFNISPLSFFQVNPIQTEILYNKALEYAELTENETVFDA 315 Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276 YCG G +L L++ +V VEI + ++ A+ N N+V+NV+ S+E Sbjct: 316 YCGTGTITLFLSQKAKKVYGVEIIESAIINAKENAKLNNVDNVEFFVGKSEEV------- 368 Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSI 334 + ++ + + VDPPR G D + + ++Y+SC+P +L RDL I Sbjct: 369 -----IPNLINDGIKADIVVVDPPRKGCDVKLLEAIGEVKPKKVVYVSCDPSTLARDLKI 423 Query: 335 L-STTHTIERLALFDQFPYTRHMECGVLLVRK 365 L + + + D FP T H+E V L++K Sbjct: 424 LNEKGYKVVEIQPVDMFPQTSHIENVVKLIKK 455 >gi|292670870|ref|ZP_06604296.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Selenomonas noxia ATCC 43541] gi|292647491|gb|EFF65463.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Selenomonas noxia ATCC 43541] Length = 465 Score = 288 bits (737), Expect = 9e-76, Method: Composition-based stats. Identities = 80/387 (20%), Positives = 142/387 (36%), Gaps = 39/387 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56 L YE QL K ++ + + + EP +YR + +F I + Sbjct: 93 GCQLQHLSYEAQLDAKRAQVAEALTHIGKLSQIPVKETMRAEEPWNYRNKMQFPIGINKG 152 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMA-------TIRLEPLLRAKLFQIDY 109 + F Q + + N L M + E + + I Sbjct: 153 KILVGCFAQGSHNIIDTKNCHIQHTANNDLANAMRDIVEHLHIPVYNEDTHKGVMRHIIG 212 Query: 110 LTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQL-------IGRANKTKICL 162 +++ + ++ ++ LR+ L Q + T++ Sbjct: 213 RVGRNNDLMAVIVTATKHLPRAKDVVRMLRERLPNLVSIHQNIQTYHNNVIMGRDTQLLW 272 Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNG 221 R + + L L + SF Q N + E LA A +++ YCG G Sbjct: 273 GRPTIIDSLGR----LNFHISPRSFFQVNTRQAERLYEQALAYADLHGTETVIDAYCGTG 328 Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281 +L LA+ +V +EI +P++ AR N NHV N + + + A+ + Sbjct: 329 TITLFLAQRARKVYGIEIVQPAILDARKNARDNHVKNAEFIVGDATAVMPALYK------ 382 Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILST-T 338 R + +DPPR+G ++ + I+Y+SCNP +L RDL+IL Sbjct: 383 ------QGIRPDVVVIDPPRAGCNETVLCTFANMRPQRIIYVSCNPATLARDLAILKELG 436 Query: 339 HTIERLALFDQFPYTRHMECGVLLVRK 365 + + + D FP T H+E L+ +K Sbjct: 437 YITQEVQPVDLFPQTSHVENVALITKK 463 >gi|255308421|ref|ZP_05352592.1| putative RNA methyltransferase [Clostridium difficile ATCC 43255] Length = 452 Score = 288 bits (737), Expect = 9e-76, Method: Composition-based stats. Identities = 81/388 (20%), Positives = 152/388 (39%), Gaps = 41/388 (10%) Query: 2 SGTLLID-QYEQQLAEKVDRLRQMMLAFQVPNL-----QIFRSEPIHYRMRAEFHIWHDG 55 G + D Y +QL K + ++Q++ I P YR +A+F I + Sbjct: 80 GGCQIQDLDYNKQLEMKTNEVKQVLSRIGKLEDVEVHDTIGMDNPYRYRNKAQFPIQKNN 139 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGSLL-----------INALMIEMMATIRLEPLLRAKL 104 + ++T + + + + + I A + + L+R + Sbjct: 140 GIPIIGFYKKKTHDVISTEKCVIQHEINDKIVKIIKTYIRAYKVSIYDEKTHTGLIRHLV 199 Query: 105 FQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR 164 +I + T + +V +E A L++ + K + + + + T L R Sbjct: 200 TKIGFTTKEVMVVLVANGNKLPY---LKELASVLKENIPGFKTLVVNVNQKD-TNAILGR 255 Query: 165 D----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCG 219 + Y D ++ L++ SF Q N + + VL A + ++YCG Sbjct: 256 ENIVIYGDGKINDYIGDLVFEISPLSFFQVNPVQTKVLYDKVLEYANLNDTDTVFDIYCG 315 Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279 G SL LA+ +V +EI +++ A+ N N+++N + ++E M RE Sbjct: 316 IGTISLFLAQKAKKVYGIEIIDDAIKDAKINAKLNNIHNAEFYVGKAEEIVPKMYRE--- 372 Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILS- 336 + VDPPR G D+ + + I+Y+SCNP +L RDL L+ Sbjct: 373 ---------GKTANVVVVDPPRKGCDEKVLETIVSMNPERIVYVSCNPSTLARDLDYLNV 423 Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVR 364 D FP++ H+E +++ Sbjct: 424 HGFKCVEAQPVDMFPHSTHVETVAKIIK 451 >gi|283795951|ref|ZP_06345104.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium sp. M62/1] gi|291076596|gb|EFE13960.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium sp. M62/1] Length = 461 Score = 288 bits (737), Expect = 1e-75, Method: Composition-based stats. Identities = 85/386 (22%), Positives = 142/386 (36%), Gaps = 42/386 (10%) Query: 3 GTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDG-DDLYHI 61 L YE+QLA K + + ++ I P HYR + HD + Sbjct: 92 CQYLHLSYEKQLAVKQEMINGLLKGLCPVKPIIGMENPYHYRNKVHAVFGHDRRGNAVSG 151 Query: 62 MFDQQTKERMRIDYFMPGSLLINAL-----------MIEMMATIRLEPLLRAKLFQIDYL 110 ++ + T E + ++ + + + I LLR L + + Sbjct: 152 VYKEGTHELVPVETCLIEDEKADEIIGTIRGMLRSFKIRTFDEDTGYGLLRHVLVKRGFA 211 Query: 111 TSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGR-------ANKTKICLD 163 T + +VT + + LR+ IQ + K + Sbjct: 212 TGEIMVVLVTA---SPVFPSKNHFVKALREKHPEITTIIQNVNGRSTSMVLGEKEHVLWG 268 Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGN 222 + Y+++ L +R SF Q N + + A + +L+ YCG G Sbjct: 269 KGYIEDILC----GHRFRISSRSFYQVNPVQTEKLYNKAMELAGLTGRETVLDAYCGIGT 324 Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282 + + RV+ VE+ + +V A N N + N++ + F M + E Sbjct: 325 IGITASGRAGRVIGVELNRDAVRDAVQNAKRNEIKNIEFYCNDAGRFMSRMAADGE---- 380 Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCRDLSILS-TTH 339 R +F+DPPRSG + + QA P ++YISC P++L RDL + + Sbjct: 381 --------RLDVVFMDPPRSGSTEEFIQAAAQAGPRTVVYISCGPETLARDLRVFEKKGY 432 Query: 340 TIERLALFDQFPYTRHMECGVLLVRK 365 D FP+T H EC V L RK Sbjct: 433 KAREAWPVDLFPWTGHCECVVKLERK 458 >gi|283471167|emb|CAQ50378.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus subsp. aureus ST398] Length = 453 Score = 288 bits (737), Expect = 1e-75, Method: Composition-based stats. Identities = 75/388 (19%), Positives = 150/388 (38%), Gaps = 40/388 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLA---FQVPNL--QIFRSEPIHYRMRAEFHIWH-DG 55 L YE QL K +++ + F + + ++P YR +++ + + Sbjct: 82 GCQLQHLSYEAQLEMKKEQVINLFQRKAHFDNSKINDTVGMTDPWRYRNKSQIPVGKNEQ 141 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKL 104 +++ + Q++ + + ++ + ++ L + + + L+R + Sbjct: 142 NEVIMGFYRQRSHDIIDMESCLIQDSQHQEVMNKVKSILKDLNVSIYQEQLKKGLMRHLV 201 Query: 105 FQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQ----LIGRANKTKI 160 + Y T + VT +A E + + + K I + ++ Sbjct: 202 VRTGYHTDEMMVIFVTNGKKWPQKNAVVEKILDAFPNVTSIKQNINDSHSNVIMGRQSIT 261 Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCG 219 +D + ++LT + ++ + SF Q N+ + + + ++ L+ YCG Sbjct: 262 LYGKDTIIDQLTDS----TFKISDQSFYQINSEQTEKLYNKAIEYAELTGNEVVLDTYCG 317 Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279 G L +A H V VE+ ++E A+ N N NN V ++E + Sbjct: 318 TGTIGLYMAPHAKHVYGVEVVPSAIEDAQQNATINQCNNTTFVCGKAEEVILQWKA---- 373 Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST 337 + + VDPPR G D+ + + I+YISCNP + RD +LS Sbjct: 374 --------QGIKPDVVMVDPPRKGCDETFIQTLLTLEPKRIVYISCNPATQQRDALLLSE 425 Query: 338 THTIERLALFDQFPYTRHMECGVLLVRK 365 + +E + D FP T H+E L K Sbjct: 426 KYQLEEVTPVDMFPQTTHVETVALFNLK 453 >gi|296184699|ref|ZP_06853110.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium carboxidivorans P7] gi|296050481|gb|EFG89904.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium carboxidivorans P7] Length = 463 Score = 288 bits (737), Expect = 1e-75, Method: Composition-based stats. Identities = 77/390 (19%), Positives = 152/390 (38%), Gaps = 42/390 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL-------QIFRSEPIHYRMRAEFHIWHD 54 L Y+ QL K R++ + + I ++P YR + + + Sbjct: 90 GCQLQHYSYQAQLDFKKQRVKDCIERIGKLKISEVNLHDTIGMNDPYRYRNKVQLPVGEK 149 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAK 103 ++ + Q+T E + +D + ++ + + ++ +R Sbjct: 150 NGEVNIGFYAQRTHEIINMDTCNIQHEAADKVLKLIKSWMKKYNIKSYNEQLHTGSIRHI 209 Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD 163 + + + T++ +VT + E L ++ IQ + + KT + L Sbjct: 210 MVRKAFKTNEVMVVVVTRSNELPHKEELVEM---LLESKENIVSIIQNVN-SKKTNVILG 265 Query: 164 RDYVD----ERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYC 218 + + + ++ + SF Q N + L + + + YC Sbjct: 266 IECITLWGKDNISDYIGDFKFNISPLSFFQVNPVQTEVLYNKALEYASLTGNETVFDAYC 325 Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278 G G SL L++ +V +EI ++E A+ N N++NN + + S++ Sbjct: 326 GTGTISLFLSQKSKKVYGIEIIPQAIENAKINAKQNNINNAEFIVGESEKI--------- 376 Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILS 336 + ++ + + VDPPR G + + + + A I+Y+SC+P +L RDLSIL Sbjct: 377 ---IPELIKKGIKADVVVVDPPRKGCEKSLLEAIAQMAPERIVYVSCDPGTLARDLSILD 433 Query: 337 T-THTIERLALFDQFPYTRHMECGVLLVRK 365 +T + D FP T H+E V L RK Sbjct: 434 ELGYTATEIQPVDMFPQTAHVETVVKLYRK 463 >gi|255094342|ref|ZP_05323820.1| putative RNA methyltransferase [Clostridium difficile CIP 107932] gi|255316095|ref|ZP_05357678.1| putative RNA methyltransferase [Clostridium difficile QCD-76w55] gi|255518756|ref|ZP_05386432.1| putative RNA methyltransferase [Clostridium difficile QCD-97b34] gi|260684898|ref|YP_003216183.1| putative RNA methyltransferase [Clostridium difficile CD196] gi|260688556|ref|YP_003219690.1| putative RNA methyltransferase [Clostridium difficile R20291] gi|260211061|emb|CBA66419.1| putative RNA methyltransferase [Clostridium difficile CD196] gi|260214573|emb|CBE07127.1| putative RNA methyltransferase [Clostridium difficile R20291] Length = 452 Score = 288 bits (737), Expect = 1e-75, Method: Composition-based stats. Identities = 80/388 (20%), Positives = 151/388 (38%), Gaps = 41/388 (10%) Query: 2 SGTLLID-QYEQQLAEKVDRLRQMMLAFQVPNL-----QIFRSEPIHYRMRAEFHIWHDG 55 G + D Y +QL K + ++Q++ I P YR +A+F I + Sbjct: 80 GGCQIQDLDYNKQLEMKTNEVKQVLSRIGKLEDVEVHDTIGMDNPYRYRNKAQFPIQKNN 139 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGSLL-----------INALMIEMMATIRLEPLLRAKL 104 + ++T + + + + + I A + + L+R + Sbjct: 140 GIPIIGFYKKKTHDVISTEKCVIQHEINDKIVKIIKTYIRAYKVSIYDEKTHTGLIRHLV 199 Query: 105 FQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR 164 +I + T + +V +E A L++ + K + + + + T L R Sbjct: 200 TKIGFTTKEVMVVLVANGNKLPY---LKELASVLKENIPGFKTLVVNVNQKD-TNAILGR 255 Query: 165 D----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCG 219 + Y D ++ L++ SF Q N + + L A + ++YCG Sbjct: 256 ENIVIYGDGKINDYIGDLVFEISPLSFFQVNPVQTKVLYDKALEYANLNDTDTVFDIYCG 315 Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279 G SL LA+ +V +EI +++ A+ N N+++N + ++E M RE Sbjct: 316 IGTISLFLAQKAKKVYGIEIIDDAIKDAKINAKLNNIHNAEFYVGKAEEIVPKMYRE--- 372 Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILS- 336 + VDPPR G D+ + + I+Y+SCNP +L RDL L+ Sbjct: 373 ---------GKTANVVVVDPPRKGCDEKVLETIVSMNPERIVYVSCNPSTLARDLDYLNV 423 Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVR 364 D FP++ H+E +++ Sbjct: 424 HGFKCVEAQPVDMFPHSTHVETVAKIIK 451 >gi|314936049|ref|ZP_07843398.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus hominis subsp. hominis C80] gi|313655866|gb|EFS19609.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus hominis subsp. hominis C80] Length = 454 Score = 288 bits (737), Expect = 1e-75, Method: Composition-based stats. Identities = 78/387 (20%), Positives = 141/387 (36%), Gaps = 38/387 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-----IFRSEPIHYRMRAEFHIWHDGD 56 L YE QL K ++ + I P YR +++ + D + Sbjct: 81 GCQLQHMSYESQLKMKKQQVVNLFHKKAKLEETVIHDTIGMDHPWRYRNKSQLPVGKDKN 140 Query: 57 -DLYHIMFDQQTKERMRIDYFMPGSLL-----------INALMIEMMATIRLEPLLRAKL 104 + Q++ + + +D + +N L + + + LLR + Sbjct: 141 NKTIMGYYRQRSHDIIDMDSCLIQDEKQQELMNDIKQWLNELNVSIYNEKNKKGLLRHVV 200 Query: 105 FQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR 164 + + T++ VT RL + Q I ++ I + Sbjct: 201 IRTSHYTNEVMIIFVTNCSK---FKEAETLVHRLTEVYPNITSIKQNINNSHSNVIMGKQ 257 Query: 165 D---YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGN 220 Y +++T I+ + SF Q N+ + + + + + +L+ YCG Sbjct: 258 SMTLYGKDKITDQLSETIFEISDQSFYQINSVQTEKLYQKAIDYAQLSGNEIVLDTYCGI 317 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G L +A V VEI +++ A+ N NH +N ++E ++ Sbjct: 318 GTIGLYMAPVAKHVYGVEIVPSAIQDAKQNALINHFDNTTFECGKAEEVIIEWKQ----- 372 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTT 338 I VDPPR G D + + A I+YISCNP + RD +L+ Sbjct: 373 -------KGIEPDVIMVDPPRKGCDQVFIETLLELAPKRIIYISCNPSTQQRDAQLLANL 425 Query: 339 HTIERLALFDQFPYTRHMECGVLLVRK 365 + ++ + D FP+T H+E L RK Sbjct: 426 YYLKEITPVDMFPHTTHIETVALFERK 452 >gi|227519503|ref|ZP_03949552.1| tRNA (uracil-5-)-methyltransferase [Enterococcus faecalis TX0104] gi|227073028|gb|EEI10991.1| tRNA (uracil-5-)-methyltransferase [Enterococcus faecalis TX0104] Length = 456 Score = 288 bits (737), Expect = 1e-75, Method: Composition-based stats. Identities = 80/389 (20%), Positives = 147/389 (37%), Gaps = 41/389 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54 L Y+ QL K D L+Q + F+ N Q I P +YR +A+F + Sbjct: 84 GCQLQHLAYKAQLDFKKDLLKQALNKFKPVNYQNYELRKTIGMENPWNYRNKAQFQLRQI 143 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAK 103 + ++ + + + ID + L+N + + + + R Sbjct: 144 DGQVEAGLYQADSHQLVPIDNCLVQQPATTKVMNTLVDLLNDFQLPIYDERKNSGIFRTL 203 Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD 163 + ++ Q+ + V I + + + L +Q + KT + + Sbjct: 204 MVRVGI---QTGEVQVVFITQSQKFPQKEKMVRAINEQLPEVVSIMQNVQN-KKTSLVMG 259 Query: 164 RD----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYC 218 D + E + +++ +F Q N + E + A +++ YC Sbjct: 260 DDTLHLWGKESIEEHINDVVFDLSPRAFFQLNPEQTEILYNEGIKALDLQPNETVVDAYC 319 Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278 G G L LA+ +V ++ +++ AR+N V N ++++ +E Sbjct: 320 GVGTIGLSLAKQAHQVRGMDTIPAAIDDARFNAKRLGVTNTHYAVGTAEDLLPKWFKE-- 377 Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILS 336 ++ I VDPPR+GLD + + P ++YISCN +L RDL L+ Sbjct: 378 ----------GFKPDAIVVDPPRTGLDRKLLTALLKQPPKKMVYISCNVSTLARDLVQLA 427 Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVRK 365 + + L D FP T E V L RK Sbjct: 428 KVYQVNYLQSVDMFPQTARCEVVVKLTRK 456 >gi|317473452|ref|ZP_07932746.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Anaerostipes sp. 3_2_56FAA] gi|316899102|gb|EFV21122.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Anaerostipes sp. 3_2_56FAA] Length = 458 Score = 288 bits (737), Expect = 1e-75, Method: Composition-based stats. Identities = 92/392 (23%), Positives = 159/392 (40%), Gaps = 45/392 (11%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-------VPNLQIFRSEPIHYRMRAEFHIWH- 53 TL YE+QL K ++++ + + EP +YR +A+F + Sbjct: 81 GCTLQHLSYEKQLEYKFNKVKNCLERIGGIENAGSLMEPIYGMDEPYYYRNKAQFPVGRN 140 Query: 54 DGDDLYHIMFDQQTKERMRIDYFMPGSLLINAL-----------MIEMMATIRLEPLLRA 102 L + +T + + + + +E L+R Sbjct: 141 KDGKLITGFYAGRTHSIIDCTHCSIQHPVNEEILSKVLDYMERNHVEPYDEKNHRGLVRH 200 Query: 103 KLFQIDYLTSQSDQAIVTLIYHR------LLDDAWRECAIRLRDALHARKYQIQLIGRAN 156 + ++ ++T + +V + L D+ +E + ++ N Sbjct: 201 IMTRVGFVTGEIMVCLVVNGRKKDLLNLSELVDSLKEI-EGMTSICVNSNWEKTNRIMGN 259 Query: 157 KTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLE 215 K + Y+ + + + Y+ SF Q N + E L + + + Sbjct: 260 KVEEVYGPAYIYDYIG----NVKYQIGPLSFFQVNPRQTKVLYEKALQYAGLCGNETVWD 315 Query: 216 LYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275 LYCG G SL LA+ +V VEI K ++E AR N NH++NV+ ++E R Sbjct: 316 LYCGIGTISLFLAQKAKQVYGVEIVKEAIEDARLNAEMNHMDNVQFFVGKAEEVLP---R 372 Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCRDLS 333 E E N I VDPPR G D A + MV+ P I+Y+SC+P +L RDL Sbjct: 373 EYEKN--------GVYADVIVVDPPRKGCDRALLDTMVKMGPERIVYVSCDPGTLARDLK 424 Query: 334 IL-STTHTIERLALFDQFPYTRHMECGVLLVR 364 +L +++E++A+ DQF +T H+E LL + Sbjct: 425 VLGGEGYSVEKVAVVDQFGHTGHVETVCLLSK 456 >gi|315174955|gb|EFU18972.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX1346] Length = 456 Score = 288 bits (737), Expect = 1e-75, Method: Composition-based stats. Identities = 80/389 (20%), Positives = 148/389 (38%), Gaps = 41/389 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54 L Y+ QL K D L+Q + F+ N Q I P +YR +A+F + Sbjct: 84 GCQLQHLAYKAQLDFKKDLLKQALNKFKPANYQNYELRKTIGMENPWNYRNKAQFQLRQI 143 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAK 103 + ++ + + + ID + L+N + + + + R Sbjct: 144 DGQVEAGLYQADSHQLVPIDNCLVQQPATTKVMNTLVDLLNKFQLPIYDERKNSGIFRTL 203 Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD 163 + ++ Q+ + V I + + + L +Q + KT + + Sbjct: 204 MVRVGI---QTGEVQVVFITQSQKFPQKEKMVRVINEQLPEVVSIMQNVQN-KKTSLVMG 259 Query: 164 RD----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYC 218 D + E + +++ +F Q N + E + A +++ YC Sbjct: 260 DDTLHLWGKESIEEHINDVVFDLSPRAFFQLNPEQTEVLYNEGIKALDLQPNETVVDAYC 319 Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278 G G L LA+ +V ++ +++ AR+N V N ++++ +E Sbjct: 320 GVGTIGLSLAKQAHQVRGMDTIPAAIDDARFNAKRLGVTNTHYAVGTAEDLLPKWFKE-- 377 Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILS 336 ++ I VDPPR+GLD + + P ++YISCN +L RDL L+ Sbjct: 378 ----------GFKPDAIVVDPPRTGLDRKLLTALLKQPPKKMVYISCNVSTLARDLVQLA 427 Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVRK 365 + ++ L D FP T E V L RK Sbjct: 428 KVYQVDYLQSVDMFPQTARCEVVVKLTRK 456 >gi|295090952|emb|CBK77059.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium cf. saccharolyticum K10] Length = 461 Score = 288 bits (737), Expect = 1e-75, Method: Composition-based stats. Identities = 86/386 (22%), Positives = 142/386 (36%), Gaps = 42/386 (10%) Query: 3 GTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDG-DDLYHI 61 L YE+QLA K + + ++ I P HYR + HD + Sbjct: 92 CQYLHLSYEKQLAVKQEMINGLLKGLCPVKPIIGMENPYHYRNKVHAVFGHDRRGNAVSG 151 Query: 62 MFDQQTKERMRIDYFMPGSLLINAL-----------MIEMMATIRLEPLLRAKLFQIDYL 110 ++ + T E + ++ + + + I LLR L + + Sbjct: 152 VYKEGTHELVPVETCLIEDEKADEIIGTIRGMLRSFKIRTFDEDTGYGLLRHVLVKRGFA 211 Query: 111 TSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGR-------ANKTKICLD 163 T + +VT + + LR+ IQ I K + Sbjct: 212 TGEIMVVLVTA---SPVFPSKNHFVKALREKHPEITTIIQNINGRSTSMVLGEKEHVLWG 268 Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGN 222 + Y+++ L +R SF Q N + + A + +L+ YCG G Sbjct: 269 KGYIEDILC----GHRFRISSRSFYQVNPVQTEKLYNKAMELAGLTGRETVLDAYCGIGT 324 Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282 + + RV+ VE+ + +V A N N + N++ + F M + E Sbjct: 325 IGITASGRAGRVIGVELNRDAVRDAVQNAKRNEIKNIEFYCNDAGRFMSRMAADGE---- 380 Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCRDLSILS-TTH 339 R +F+DPPRSG + + QA P ++YISC P++L RDL + + Sbjct: 381 --------RLDVVFMDPPRSGSTEEFIQAAAQAGPRTVVYISCGPETLARDLRVFEKKGY 432 Query: 340 TIERLALFDQFPYTRHMECGVLLVRK 365 D FP+T H EC V L RK Sbjct: 433 KAREAWPVDLFPWTGHCECVVKLERK 458 >gi|293571847|ref|ZP_06682863.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium E980] gi|291608101|gb|EFF37407.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium E980] Length = 457 Score = 288 bits (737), Expect = 1e-75, Method: Composition-based stats. Identities = 79/384 (20%), Positives = 156/384 (40%), Gaps = 40/384 (10%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGDDLY 59 L +YEQQL K ++ +M + +EP YR +A+ + L Sbjct: 88 LAHLKYEQQLVFKQKQVEHVMAKIAKMSEIPVLPTVGMAEPFGYRNKAQIPVRRIDGQLA 147 Query: 60 HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIR-----------LEPLLRAKLFQID 108 + + + + + I+ F +I+ + + ++ E LR + + Sbjct: 148 TGFYKKNSHDLVPIEDFYIQDPVIDQAIKVVRDILQRFQVRGYNEEKNEGQLRHIIIRRG 207 Query: 109 YLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR 164 + + + +VT + + +A E + + + + +K K+ DR Sbjct: 208 HYSHEMMVVLVTRKEKFFKSKEIAEAIHEELPEVVSVIQNINEEKTNVILGDKEKVLYDR 267 Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNF 223 DY++++L YR SF Q N ++ + + + + D +++ Y G G Sbjct: 268 DYIEDQLLGK----TYRISAKSFYQVNTQQAEYLYQTAIKFAELDKKDIVIDAYSGIGTI 323 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 L LA D+V +E+ ++E A++N N + NV +++ + + Sbjct: 324 GLSLADKVDKVYGMEVIPEAIEDAQFNALNNKIENVYYEVGKAEKVMKKWQE-------- 375 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCRDLSILST-THT 340 + I VDPPR GLD + ++ P I+YISCNP + RD + + + Sbjct: 376 ----KGIKPSVIVVDPPRKGLDHHFIESAIEMSPERIVYISCNPATFARDAKLFAEAGYA 431 Query: 341 IERLALFDQFPYTRHMECGVLLVR 364 ++++ D FP T H+E V+ Sbjct: 432 VKKVQPVDLFPQTHHIELVASFVK 455 >gi|242371794|ref|ZP_04817368.1| TrmA family RNA methyltransferase [Staphylococcus epidermidis M23864:W1] gi|242350495|gb|EES42096.1| TrmA family RNA methyltransferase [Staphylococcus epidermidis M23864:W1] Length = 453 Score = 288 bits (736), Expect = 1e-75, Method: Composition-based stats. Identities = 71/387 (18%), Positives = 148/387 (38%), Gaps = 40/387 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMML---AFQ--VPNLQIFRSEPIHYRMRAEFHIWHDGD 56 L Y+ QL K +++ + F+ N + +P YR +++ + + D Sbjct: 82 GCQLQHMTYQAQLDMKKEQVVNLFHRKGPFKDTPINPTVGMEQPWRYRNKSQIPVGKNKD 141 Query: 57 DL-YHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKL 104 + Q++ + + +D+ + +N L I + L+R + Sbjct: 142 GQVIMGFYRQRSHDIIDMDHCLIQDEQHQEVMNHVKQWLNELNISIYDEQSKTGLIRHLV 201 Query: 105 FQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR 164 + + T ++ +V + + +L++A Q I ++ + + + R Sbjct: 202 VRTGHHT---NEMMVIFVTNGKKFKHSEMLVEKLKNAFPNITSIKQNINDSH-SNVIMGR 257 Query: 165 D----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCG 219 Y E++ + + + SF Q N+ + + + + + +L+ YCG Sbjct: 258 HSVTLYGKEKIVDQLSEVTFNISDQSFYQINSAQTEKLYQKAIDYAQLTGEEIVLDTYCG 317 Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279 G L +A V VE+ +++ A N N +NN +++ + Sbjct: 318 IGTIGLYMAPQAKHVYGVEVVPSAIKDAEENATKNQLNNTTFECGKAEDIILEWKA---- 373 Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILST 337 + + VDPPR G D+ + + I+YISCNP + RD +L++ Sbjct: 374 --------QGIKPDVVMVDPPRKGCDETFIKTLLKLNPKRIVYISCNPSTQQRDAQMLAS 425 Query: 338 THTIERLALFDQFPYTRHMECGVLLVR 364 + + + D FP T H+E L R Sbjct: 426 HYHLVEITPVDMFPQTTHIETVALFER 452 >gi|206968113|ref|ZP_03229069.1| RNA methyltransferase, TrmA family [Bacillus cereus AH1134] gi|206737033|gb|EDZ54180.1| RNA methyltransferase, TrmA family [Bacillus cereus AH1134] Length = 459 Score = 288 bits (736), Expect = 1e-75, Method: Composition-based stats. Identities = 81/384 (21%), Positives = 157/384 (40%), Gaps = 32/384 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ------IFRSEPIHYRMRAEFHIWHDG 55 L Y++QL +K D + Q + +++ + P HYR +++ + Sbjct: 88 GCQLQHLDYKEQLNQKRDIVVQAFEKYMKNSMEEKIRPTLGMENPWHYRNKSQLQVGRKD 147 Query: 56 DDLYHIMFDQQTKERMRIDYFMP-------GSLLINALMIEMMATIRLEPLLRAKLFQID 108 + + ++ Q + + + I + M + ++ ++ ++ +I E + + I Sbjct: 148 EKVITGLYKQNSHQLIDIAHCMIQHKATNEATKVVRRILEKLNVSIYNEKKQKGLVRTIV 207 Query: 109 YLTS-QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY- 166 T+ Q+ + VTLI + + ++ + A K +Q + + I D+ + Sbjct: 208 TRTAVQTGEVQVTLITTKEELPNKEQFIAEVQKQMPAVKSIMQNVNWRKTSVIFGDKTFK 267 Query: 167 --VDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGNGNF 223 E + L + +F Q N V + E AA +++ YCG G Sbjct: 268 LAGKEVIQETLGDLSFELSARAFFQLNPEQTVVLYNEAKKAAALTGDEKIVDAYCGVGTI 327 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 L LA V +++ ++ AR N + N K ++++ +E Sbjct: 328 GLWLANDAAEVRGMDVIPEAIADARKNAKCHGFTNTKYEAGKAEQWLPKWVKE------- 380 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILSTTHTI 341 +R I VDPPR+G DD + + ++Y+SCNP SL RD+ L ++ + Sbjct: 381 -----GWRPDVIVVDPPRTGCDDKLLETILKVKPKQVVYVSCNPSSLARDVQALMKSYEV 435 Query: 342 ERLALFDQFPYTRHMECGVLLVRK 365 E + D FP+T H+E V L K Sbjct: 436 EYVQPVDMFPHTAHVENVVRLNLK 459 >gi|255523417|ref|ZP_05390386.1| RNA methyltransferase, TrmA family [Clostridium carboxidivorans P7] gi|255512875|gb|EET89146.1| RNA methyltransferase, TrmA family [Clostridium carboxidivorans P7] Length = 458 Score = 288 bits (736), Expect = 1e-75, Method: Composition-based stats. Identities = 77/390 (19%), Positives = 152/390 (38%), Gaps = 42/390 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL-------QIFRSEPIHYRMRAEFHIWHD 54 L Y+ QL K R++ + + I ++P YR + + + Sbjct: 85 GCQLQHYSYQAQLDFKKQRVKDCIERIGKLKISEVNLHDTIGMNDPYRYRNKVQLPVGEK 144 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAK 103 ++ + Q+T E + +D + ++ + + ++ +R Sbjct: 145 NGEVNIGFYAQRTHEIINMDTCNIQHEAADKVLKLIKSWMKKYNIKSYNEQLHTGSIRHI 204 Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD 163 + + + T++ +VT + E L ++ IQ + + KT + L Sbjct: 205 MVRKAFKTNEVMVVVVTRSNELPHKEELVEM---LLESKENIVSIIQNVN-SKKTNVILG 260 Query: 164 RDYVD----ERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYC 218 + + + ++ + SF Q N + L + + + YC Sbjct: 261 IECITLWGKDNISDYIGDFKFNISPLSFFQVNPVQTEVLYNKALEYASLTGNETVFDAYC 320 Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278 G G SL L++ +V +EI ++E A+ N N++NN + + S++ Sbjct: 321 GTGTISLFLSQKSKKVYGIEIIPQAIENAKINAKQNNINNAEFIVGESEKI--------- 371 Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILS 336 + ++ + + VDPPR G + + + + A I+Y+SC+P +L RDLSIL Sbjct: 372 ---IPELIKKGIKADVVVVDPPRKGCEKSLLEAIAQMAPERIVYVSCDPGTLARDLSILD 428 Query: 337 T-THTIERLALFDQFPYTRHMECGVLLVRK 365 +T + D FP T H+E V L RK Sbjct: 429 ELGYTATEIQPVDMFPQTAHVETVVKLYRK 458 >gi|227363773|ref|ZP_03847880.1| TrmA family tRNA (uracil-5-)-methyltransferase [Lactobacillus reuteri MM2-3] gi|325682984|ref|ZP_08162500.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus reuteri MM4-1A] gi|227071130|gb|EEI09446.1| TrmA family tRNA (uracil-5-)-methyltransferase [Lactobacillus reuteri MM2-3] gi|324977334|gb|EGC14285.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus reuteri MM4-1A] Length = 480 Score = 288 bits (736), Expect = 1e-75, Method: Composition-based stats. Identities = 76/384 (19%), Positives = 155/384 (40%), Gaps = 40/384 (10%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWHDGDDLYH 60 L +Y+ QL K ++++++ + +++ +P HYR +A+ + L Sbjct: 109 LGHLKYDAQLKFKQHQIQELLAKAHLDEIEVLPTMGMEKPYHYRNKAQVPVKMVHGQLET 168 Query: 61 IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKLFQIDY 109 + + + + I+ F I+ ++ + +R + ++R + + Y Sbjct: 169 GFYKRGSHNLVPIEDFYIQDPEIDKAIVVVRDLLRQYHITPYDEQTGKGVIRTVMVRRGY 228 Query: 110 LTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD 165 + + +VT L + + D ++ + + NK K D Sbjct: 229 YSHEMMVVLVTNTKRLPMEKQIVDGIVAGVPEVKSIVQNINDKRTNRLLGNKNKTLWGAD 288 Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNFS 224 + ++L + + SF Q N + + + A +++ YCG G S Sbjct: 289 EIHDQLL----GIDFAISPLSFYQVNPQQTERLYQTAIDNAGLDGNQTVIDAYCGIGTIS 344 Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284 L +A+H +V VEI ++E A++N N + N K V ++E + E Sbjct: 345 LAVAKHAKQVYGVEIVPAAIEDAKHNAKRNGIKNAKFVVGKAEEQFAKWQAE-------- 396 Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILS-TTHTI 341 + + VDPPR GL ++ + ++Y+SCNP +L RD+ + + + Sbjct: 397 ----GLKPDVVIVDPPRKGLAESLIEATGKMGPKKVIYVSCNPATLVRDIKRFADQGYHV 452 Query: 342 ER-LALFDQFPYTRHMECGVLLVR 364 + + DQFP T H+E +L R Sbjct: 453 TKPIQPVDQFPQTTHVESVTVLER 476 >gi|310827128|ref|YP_003959485.1| RNA methyltransferase [Eubacterium limosum KIST612] gi|308738862|gb|ADO36522.1| RNA methyltransferase [Eubacterium limosum KIST612] Length = 446 Score = 288 bits (736), Expect = 1e-75, Method: Composition-based stats. Identities = 86/386 (22%), Positives = 152/386 (39%), Gaps = 43/386 (11%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56 LL QY+ QLA K + + N I P YR +A+F I G Sbjct: 79 GCQLLQVQYDAQLAIKRKIVTDALERIGGIKDVPVNAVIGMETPYRYRNKAQFKISGKG- 137 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLI-------NALMIEMMATIRLEPLLRAKLFQIDY 109 F +++ + + I+ + NAL+ + + E L I Sbjct: 138 ---VGFFAKRSHQIVPIEDCLTQPESCVQVIETFNALLKDGCFELYDEQQHTGFLRGIIQ 194 Query: 110 LTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGR-------ANKTKICL 162 T++ + ++ ++ + + + + + + + + + L Sbjct: 195 RTNEQGENMIVIVGNGKKLKHKDKILQAITERIPEVRSVYLNVNTTRGNAVLGRENHLLL 254 Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNG 221 ++ER+ L + NSF Q N + + V + L +LYCG G Sbjct: 255 GTPQIEERIG----DLSFLISPNSFFQVNTRQTKVLYDLVKRMATLTGAETLFDLYCGTG 310 Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281 L LAR RV +EI + +V A+ N N + N++ ++ S+ + E Sbjct: 311 TIGLYLAREAARVYGIEIVENAVLDAQENAERNQIKNIRFIQGKSETEAPKLAEE----- 365 Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST-T 338 I +DPPR G D A + M++ + P ++Y+SCNP +L RDL IL Sbjct: 366 -------GVHPDVIVLDPPRKGCDPALLEMIENLSVPKVVYVSCNPSTLARDLKILREYG 418 Query: 339 HTIERLALFDQFPYTRHMECGVLLVR 364 + ++ + D FP T H+E VL+ + Sbjct: 419 YQVQEVQPVDLFPGTGHVETVVLMSK 444 >gi|153815457|ref|ZP_01968125.1| hypothetical protein RUMTOR_01692 [Ruminococcus torques ATCC 27756] gi|145847099|gb|EDK24017.1| hypothetical protein RUMTOR_01692 [Ruminococcus torques ATCC 27756] Length = 500 Score = 288 bits (736), Expect = 1e-75, Method: Composition-based stats. Identities = 88/411 (21%), Positives = 149/411 (36%), Gaps = 54/411 (13%) Query: 2 SGTLLID-QYEQQLAEKVDRLRQMMLAFQ---------VPNLQIFRSEPIHYRMRAEFHI 51 G + + YE+QL K ++R + I P +YR +A+F Sbjct: 99 GGCQIQEMSYEKQLEFKERKVRGNLERIGGFPSELLERTKEPIIGMETPFYYRNKAQFPF 158 Query: 52 WHDG-DDLYHIMFDQQTKERMRIDYFMPGSLL-----------INALMIEMMATIRLEPL 99 D + + +T + + + G+ + + I L Sbjct: 159 GTDKEGNPVTGFYAGRTHDIIANTNCILGAAVNEHILESILDFMKKYKIRSYDEKTGTGL 218 Query: 100 LRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHAR----------KYQI 149 R L + + T + V W L + L + Sbjct: 219 FRHVLLRYGFTTKEIMVCFVVNKDKADKSGEWFPHQKELVEELAKIDGMTSITASPNTKR 278 Query: 150 QLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGI 209 + + ++ + Y+ + + ++ Y+ SF Q N + L G+ Sbjct: 279 TNVIMGDTFEVLWGQGYITDYIG----SVKYQISPLSFYQVNPVQTEKLYSQALE-YAGL 333 Query: 210 QGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267 +GD + +LYCG G SL LA+ +V VEI P+++ AR N N + N + S+ Sbjct: 334 KGDETVWDLYCGIGTISLFLAQKAKQVYGVEIVPPAIDDARENAQLNGIENAQFFVGKSE 393 Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNP 325 E ++ E + I VDPPR G D + + I+Y+SC+ Sbjct: 394 EILPKYYKDYE----EQHGGEKAHADVIVVDPPRKGCDAKLLDTILKMQPERIVYVSCDS 449 Query: 326 DSLCRDLSILST---------THTIERLALFDQFPYTRHMECGVLLVRKPS 367 +L RDL IL + IE+ DQFP T H+E VL+ +K S Sbjct: 450 ATLARDLKILCEGAQEDEKTAGYQIEKWRAVDQFPMTTHVETIVLIQKKNS 500 >gi|257084323|ref|ZP_05578684.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis Fly1] gi|256992353|gb|EEU79655.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis Fly1] Length = 456 Score = 288 bits (736), Expect = 1e-75, Method: Composition-based stats. Identities = 80/389 (20%), Positives = 148/389 (38%), Gaps = 41/389 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54 L Y+ QL K D L+Q + F+ N Q I P +YR +A+F + Sbjct: 84 GCQLQHLAYKAQLDFKKDLLKQALNKFKPANYQNYELRKTIGMENPWNYRNKAQFQLRQI 143 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAK 103 + ++ + + + ID + L+N + + + + R Sbjct: 144 DGQVEAGLYQADSHQLVPIDNCLVQQPATTKVMNTLVDLLNDFQLPIYDERKNSGIFRTL 203 Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD 163 + ++ Q+ + V I + + + L +Q + KT + + Sbjct: 204 MVRVGI---QTGEVQVVFITQSQKFPQKEKMVRAINEQLPEVVSIMQNVQN-KKTSLVMG 259 Query: 164 RD----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYC 218 D + E + +++ +F Q N + E + A +++ YC Sbjct: 260 DDTLHLWGKESIEEHINDVVFDLSPRAFFQLNPEQTEVLYNEGIKALDLQPSETVVDAYC 319 Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278 G G L LA+ +V ++ +++ AR+N V N ++++ +E Sbjct: 320 GVGTIGLSLAKQAHQVRGMDTIPAAIDDARFNAKRLGVMNTHYAVGTAEDLLPKWFKE-- 377 Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILS 336 ++ I VDPPR+GLD + + P ++YISCN +L RDL L+ Sbjct: 378 ----------GFKPDAIVVDPPRTGLDRKLLTALLKQPPKKMVYISCNVSTLARDLVQLA 427 Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVRK 365 + ++ L D FP T E V L RK Sbjct: 428 KVYQVDYLQSVDMFPQTARCEVVVKLTRK 456 >gi|227543578|ref|ZP_03973627.1| TrmA family tRNA (uracil-5-)-methyltransferase [Lactobacillus reuteri CF48-3A] gi|300909393|ref|ZP_07126854.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus reuteri SD2112] gi|227186418|gb|EEI66489.1| TrmA family tRNA (uracil-5-)-methyltransferase [Lactobacillus reuteri CF48-3A] gi|300893258|gb|EFK86617.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus reuteri SD2112] Length = 478 Score = 288 bits (736), Expect = 1e-75, Method: Composition-based stats. Identities = 75/386 (19%), Positives = 155/386 (40%), Gaps = 40/386 (10%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWHDGDDLYH 60 L +Y+ QL K ++++++ + +++ +P HYR +A+ + L Sbjct: 109 LGHLKYDAQLKFKQHQIQELLAKAHLDEIEVLPTMGMEKPYHYRNKAQVPVKMVHGQLET 168 Query: 61 IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKLFQIDY 109 + + + + I+ F I+ ++ + +R + ++R + + Y Sbjct: 169 GFYKRGSHNVVPIEDFYIQDPEIDKAIVVVRDLLRQYHITPYDEQTGKGVIRTVMVRRGY 228 Query: 110 LTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD 165 + + +VT L + + D ++ + + +K K D Sbjct: 229 YSHEMMVVLVTNTKRLPMEKQIVDGIVAGVPEVKSIVQNINDKRTNRLLGDKNKTLWGAD 288 Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNFS 224 + ++L + + SF Q N + + + A +++ YCG G S Sbjct: 289 EIHDQLL----GIDFAISPLSFYQVNPQQTERLYQTAIDNAGLDGNQTVIDAYCGIGTIS 344 Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284 L +A+H +V VEI ++E A++N N + N K V ++E + Sbjct: 345 LAVAKHAKQVYGVEIVPAAIEDAKHNAKRNSIKNAKFVVGKAEE------------QFAK 392 Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILS-TTHTI 341 + + VDPPR GL ++ + ++Y+SCNP +L RD+ + + + Sbjct: 393 WQAAGLKPDVVIVDPPRKGLAESLIEATGKMGPKKVIYVSCNPATLVRDIKRFADQGYHV 452 Query: 342 ER-LALFDQFPYTRHMECGVLLVRKP 366 + + DQFP T H+E +L RK Sbjct: 453 TKPIQPVDQFPQTTHVESVTVLERKK 478 >gi|299535232|ref|ZP_07048556.1| putative RNA methyltransferase [Lysinibacillus fusiformis ZC1] gi|298729353|gb|EFI69904.1| putative RNA methyltransferase [Lysinibacillus fusiformis ZC1] Length = 455 Score = 288 bits (736), Expect = 1e-75, Method: Composition-based stats. Identities = 83/386 (21%), Positives = 139/386 (36%), Gaps = 40/386 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ----VPNLQIFRSEPIHYRMRAEFHIW-HDGD 56 L YE QL K + +R +M + EP HYR +A+ ++ Sbjct: 83 GCQLQHLSYEGQLKWKENMVRNVMHRIGKIHAPVHPVKGMKEPWHYRNKAQIPFSENEAG 142 Query: 57 DLYHIMFDQQTKERMRIDYFMPGS-----------LLINALMIEMMATIRLEPLLRAKLF 105 + +T + +D + + + L I E +LR + Sbjct: 143 QAIAGFYKTKTHSIVDMDRCLIQTGEADAILAGLKKELATLGIRSYNEHTHEGMLRHVVI 202 Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD 165 + T + +VT + +E AI + L I + KT + D Sbjct: 203 RKARATGEVMVVLVT----KKQKFPQKEAAITVIQKLVPNVTSIMQNVNSEKTNVIFGDD 258 Query: 166 ----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220 + + + + + SF Q N + + L A +++ YCG Sbjct: 259 TINLWGKDVIIDTIGDVRFEISARSFYQVNPEQTEVLYKQALDYADLQGDERVIDAYCGI 318 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G SL LA+ V+ VEI ++E A+ N N N ++E +E Sbjct: 319 GTISLFLAQKAKTVMGVEIVPQAIEDAKRNALLNGFTNTYFEAGPAEEVIPRWYKE---- 374 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILS-T 337 + VDPPR G D+A + + Q ++Y+SCNP +L RDL IL Sbjct: 375 --------GKEADVLVVDPPRKGCDEALLTTILEQRPKRVVYVSCNPATLARDLRILEDG 426 Query: 338 THTIERLALFDQFPYTRHMECGVLLV 363 + + + D FP++ H E L Sbjct: 427 GYHTQEIQPVDMFPHSTHCEAVAWLK 452 >gi|15893813|ref|NP_347162.1| SAM-dependent methyltransferase [Clostridium acetobutylicum ATCC 824] gi|50401652|sp|Q97LN4|Y523_CLOAB RecName: Full=Uncharacterized RNA methyltransferase CA_C0523 gi|15023386|gb|AAK78502.1|AE007567_4 SAM-dependent methyltransferase related to tRNA(uracyl-5-)-methyltransferase (trmA family) [Clostridium acetobutylicum ATCC 824] Length = 460 Score = 287 bits (735), Expect = 2e-75, Method: Composition-based stats. Identities = 79/389 (20%), Positives = 147/389 (37%), Gaps = 42/389 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL-------QIFRSEPIHYRMRAEFHIWHD 54 L +Y +QL K +++ + + +L I +P YR + + + Sbjct: 85 GCQLQHLKYTEQLEFKKNKVVECLKRIGKLDLSSVRINETIGMEDPYFYRNKVQLPVGET 144 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGS-----------LLINALMIEMMATIRLEPLLRAK 103 + + +++ E + +D I IE + LR Sbjct: 145 AGEAKIGFYRERSHEIIEVDKCFIQDDSANEIILLIKRWIKEFNIEGYNEYSGKGTLRHI 204 Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD 163 + + + T Q +VT + +E + + K IQ I KT + L Sbjct: 205 MIRKAFKTGQIMLVLVTNTENVP---HKKELIHMITTEIQGIKGIIQNINN-KKTNVILG 260 Query: 164 RD----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYC 218 + + + + + SF Q N + L +++ + YC Sbjct: 261 QREITLWGESTIEDYIGEFKFNISSKSFFQVNPIQTEKLYSAALKYAGLTGKEVVFDAYC 320 Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278 G G SL L+++ +V VEI ++E A+ N N + N + + S+E Sbjct: 321 GTGTISLFLSQNAKKVYGVEIIPEAIENAKINAKQNGIENTEFIVGKSEE---------- 370 Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILS 336 + + + + VDPPR G + + + + + I+Y+SC+P +L RDL ILS Sbjct: 371 --EIPKLIEKGIAPEVVVVDPPRKGCEKSLLHSIAEASPKTIVYVSCDPATLSRDLGILS 428 Query: 337 T-THTIERLALFDQFPYTRHMECGVLLVR 364 + + + D FP T H+E VL+ R Sbjct: 429 ELGYEVNEVQPVDMFPMTGHVETIVLIKR 457 >gi|228476330|ref|ZP_04061031.1| 23S rRNA-methyltransferase RumA [Staphylococcus hominis SK119] gi|228269613|gb|EEK11119.1| 23S rRNA-methyltransferase RumA [Staphylococcus hominis SK119] Length = 454 Score = 287 bits (735), Expect = 2e-75, Method: Composition-based stats. Identities = 76/387 (19%), Positives = 143/387 (36%), Gaps = 38/387 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-----IFRSEPIHYRMRAEFHIWHDGD 56 L YE QL K ++ + I P YR +++ + D + Sbjct: 81 GCQLQHMSYESQLKMKKQQVVNLFHKKAKLEETVIHDTIGMDYPWRYRNKSQLPVGKDKN 140 Query: 57 -DLYHIMFDQQTKERMRIDYFMPGSLL-----------INALMIEMMATIRLEPLLRAKL 104 + Q++ + + +D + +N L + + + LLR + Sbjct: 141 NKTIMGYYRQRSHDIIDMDSCLIQDEKQQELMNDIKQWLNELNVSIYNEKNKKGLLRHVV 200 Query: 105 FQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR 164 + + T ++ ++ + + RL + Q I ++ I + Sbjct: 201 IRTSHYT---NEVMIIFVTNGSKFKEAETLVHRLTEVYPNITSIKQNINNSHSNVIMGKQ 257 Query: 165 D---YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGN 220 Y +++T I+ + SF Q N+ + + + + + +L+ YCG Sbjct: 258 SMTLYGKDKITDQLSETIFEISDQSFYQINSVQTEKLYQKAIDYAQLSGNEIVLDTYCGI 317 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G L +A V VEI +++ A+ N NH +N ++E ++ Sbjct: 318 GTIGLYMAPVAKHVYGVEIVPSAIQDAKQNALINHFDNTTFECGKAEEVIIEWKQ----- 372 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTT 338 I VDPPR G D + + A I+YISCNP + RD +L+ Sbjct: 373 -------KGIEPDVIMVDPPRKGCDQVFIETLLELAPKRIIYISCNPSTQQRDAQLLANL 425 Query: 339 HTIERLALFDQFPYTRHMECGVLLVRK 365 + ++ + D FP+T H+E L RK Sbjct: 426 YYLKEITPVDMFPHTTHIETVALFERK 452 >gi|257869135|ref|ZP_05648788.1| RNA methyltransferase [Enterococcus gallinarum EG2] gi|257803299|gb|EEV32121.1| RNA methyltransferase [Enterococcus gallinarum EG2] Length = 458 Score = 287 bits (735), Expect = 2e-75, Method: Composition-based stats. Identities = 89/390 (22%), Positives = 157/390 (40%), Gaps = 43/390 (11%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54 L YE+QL K D L+Q + F+ Q I EP HYR +A+F + +D Sbjct: 84 GCQLQHLVYEKQLDFKKDLLKQALTKFKPKGYQKYILKDTIGMEEPWHYRNKAQFQLRYD 143 Query: 55 GDDLY--HIMFDQQTKERMRIDYFMPG-----------SLLINALMIEMMATIRLEPLLR 101 +++ + + ID + L+N + + + +LR Sbjct: 144 TKSKRIEAGLYEMDSHRLVAIDDCLVQEKATQDVINGLVQLLNKYQLPIYDERKNSGILR 203 Query: 102 AKLFQIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANK 157 + ++ T + +T L L + ++ + + + + ++ Sbjct: 204 TLMVRVGRATGEVQVVFITNSSKLPQKNALIREINQRMPQVVSIMQNVQSKKTSVIMGDE 263 Query: 158 TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLEL 216 T ++ ++ERL + L + +F Q N + + + A + + +++ Sbjct: 264 TLHLWGKEAIEERL----QELTFDLSPRAFFQLNPQQTSILYDEAIKALALTKNETVVDA 319 Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276 YCG G L LA+H V ++I ++E A+ N NN ++++ Sbjct: 320 YCGVGTIGLSLAKHAKEVRGMDIIPQAIENAKENARRIQANNTHYETGTAEDL------- 372 Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSI 334 L +R +I VDPPR+GLDD + + A P ++YISCN +L RDL Sbjct: 373 -----LPKWFAAGFRPDSIVVDPPRTGLDDHLLQALVAQPPKKMVYISCNVSTLARDLVK 427 Query: 335 LSTTHTIERLALFDQFPYTRHMECGVLLVR 364 L++ IE L D FP T E V L R Sbjct: 428 LASVFKIEYLQSVDMFPQTARCEVVVKLTR 457 >gi|257869904|ref|ZP_05649557.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus gallinarum EG2] gi|257804068|gb|EEV32890.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus gallinarum EG2] Length = 467 Score = 287 bits (735), Expect = 2e-75, Method: Composition-based stats. Identities = 85/387 (21%), Positives = 156/387 (40%), Gaps = 46/387 (11%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAF-QVPNLQ----IFRSEPIHYRMRAEFHIWHDGDDLY 59 L +YE+QLA K ++ ++ ++P ++ I +P YR +A+ + L Sbjct: 97 LSHLKYEKQLAFKQQQVENVLAKVAKMPQVEVLPTIGMEQPFGYRNKAQIPVQKIKGQLT 156 Query: 60 HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKLFQID 108 + + + + I+ F I+ ++ + ++ E LR + + Sbjct: 157 TGFYRKNSHTLVPIEDFYIQDPAIDQAIVTVRNILQRFNVKAYNEEAHEGFLRHVVIRRG 216 Query: 109 YLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIG-------RANKTKIC 161 + S + +V L+ + E A + + L IQ I + K+ Sbjct: 217 H---HSGEMMVILVTRKAKFFKGEEIAEVIHEELPEVVSVIQNINEEKTNVIMGDVEKVL 273 Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGN 220 + +D++L ++ SF Q N + + D +++ Y G Sbjct: 274 YGKASIDDQLFDK----TFQISAKSFYQVNTAQTEVLYQKAFELADLQPDDIVVDAYAGI 329 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G + LA VL +E+ +VE A+ N A N + NV +++ RE Sbjct: 330 GTIGISLADRVQEVLGMEVVAEAVEDAKANAARNGLENVHYFVGKAEKIMPQWLRE---- 385 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSIL-ST 337 + +FVDPPR GL+ + + A I+YISCNP +L RDL++ Sbjct: 386 --------GIQPTVVFVDPPRKGLEASFIETTAAVKPERIVYISCNPATLARDLALFAEE 437 Query: 338 THTIERLALFDQFPYTRHMECGVLLVR 364 + +++ D FP T H+EC VL+ R Sbjct: 438 GYVTKQVQPVDLFPQTTHVECVVLMSR 464 >gi|328957913|ref|YP_004375299.1| putative RNA methyltransferase [Carnobacterium sp. 17-4] gi|328674237|gb|AEB30283.1| putative RNA methyltransferase [Carnobacterium sp. 17-4] Length = 458 Score = 287 bits (734), Expect = 2e-75, Method: Composition-based stats. Identities = 89/384 (23%), Positives = 158/384 (41%), Gaps = 40/384 (10%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAF-QVPNLQIF----RSEPIHYRMRAEFHIWHDGDDLY 59 L +Y QL K ++ M ++P + ++ + P YR +A+ + D L Sbjct: 90 LQHMRYPAQLNFKKQQVMNSMQRIAKLPEVPVYDTIGMANPSGYRNKAQIPVRKINDKLT 149 Query: 60 HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-----------LRAKLFQID 108 F + + E + ++ F I+ +I + +R + LR + + Sbjct: 150 TGFFRKNSHEVIPMENFYIQDPKIDETIIAVRDIMREYGVKPYNENENTGNLRHIIVRRG 209 Query: 109 YLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD--- 165 Y T + +VT L + L +A+ +Q + + T + L D Sbjct: 210 YYTGEIMIVLVTRTA--KLFPTSKIIPDIL-EAIPEVVSIVQNVNPKH-TNVILGDDAIV 265 Query: 166 -YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNF 223 Y +++ + SF Q N + + VL A + +++ Y G G Sbjct: 266 LYGEDKFRDTLLGNTFEISHRSFYQVNPLQTEKLYQTVLDFAELTGEETVIDAYSGIGTI 325 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 +L LA++ V +EI +P+VE A+ N N++ NV +++E E Sbjct: 326 TLTLAKNAKHVYGIEIIEPAVENAKANAELNNIENVTFEAGAAEEVMVQWSEE------- 378 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSIL-STTHT 340 + VDPPR GL+ V A ++Y+SCNP +L RDL++L +T Sbjct: 379 -----GRTADLLVVDPPRKGLEKEFTEAVIAMKPTKMVYVSCNPATLARDLALLTEGGYT 433 Query: 341 IERLALFDQFPYTRHMECGVLLVR 364 ++++ D FP T H+E LLVR Sbjct: 434 VKKVQPVDLFPQTTHVESVTLLVR 457 >gi|158319641|ref|YP_001512148.1| RNA methyltransferase [Alkaliphilus oremlandii OhILAs] gi|158139840|gb|ABW18152.1| RNA methyltransferase, TrmA family [Alkaliphilus oremlandii OhILAs] Length = 452 Score = 287 bits (734), Expect = 2e-75, Method: Composition-based stats. Identities = 78/386 (20%), Positives = 147/386 (38%), Gaps = 39/386 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ----VPNLQIFRSEPIHYRMRAEFHIWHDGDD 57 ++ YEQQL K + + + + V + + P YR +A+F + Sbjct: 80 GCQIMHMDYEQQLRTKRNTVVEALKRIGKIDAVVHPTLGMDNPYEYRNKAQFPVGILDGK 139 Query: 58 LYHIMFDQQTKERMRIDYFMPGSLL-----------INALMIEMMATIRLEPLLRAKLFQ 106 + + + E + +Y + + I+ + + L+R + + Sbjct: 140 SILGFYKKGSHEIVDTEYCHIQAPINTKIVQVIKKYIDDFDVAVYDEKEHSGLIRHVVTK 199 Query: 107 IDYLTSQSDQAIVTL----IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162 + + T + +VT Y L + +E L+ + + + + T Sbjct: 200 VGFATGEVMVIMVTNGKEFPYKDKLIEMLKENVEGLKSVVQNINMKNTNVIFGDTTFTLY 259 Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNG 221 D + + + L + SF Q N + E L A + ++YCG G Sbjct: 260 GEDQIVDYIG----DLKFNISARSFYQVNPAQTKVLYEKALEYADLTGNERVFDIYCGIG 315 Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281 SL LA+ V +EI ++E AR N NH+ N K +++ + + Sbjct: 316 TISLFLAKKAKEVHGIEIIDAAIEDARENARINHLTNTKFYVGKAEDVVPKLYK------ 369 Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STT 338 + VDPPR G +++ + + A ++Y+SCNP +L RDL+ L Sbjct: 370 ------SGLVADVVVVDPPRKGCEESVLETIVNMAPKRVVYVSCNPATLARDLAYLDEKG 423 Query: 339 HTIERLALFDQFPYTRHMECGVLLVR 364 + + D F ++ H+EC V L R Sbjct: 424 YKTVEVQPVDMFSHSSHVECCVSLER 449 >gi|148544651|ref|YP_001272021.1| RNA methyltransferase [Lactobacillus reuteri DSM 20016] gi|184154004|ref|YP_001842345.1| RNA methyltransferase [Lactobacillus reuteri JCM 1112] gi|148531685|gb|ABQ83684.1| RNA methyltransferase, TrmA family [Lactobacillus reuteri DSM 20016] gi|183225348|dbj|BAG25865.1| RNA methyltransferase [Lactobacillus reuteri JCM 1112] Length = 459 Score = 287 bits (734), Expect = 2e-75, Method: Composition-based stats. Identities = 76/384 (19%), Positives = 155/384 (40%), Gaps = 40/384 (10%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWHDGDDLYH 60 L +Y+ QL K ++++++ + +++ +P HYR +A+ + L Sbjct: 88 LGHLKYDAQLKFKQHQIQELLAKAHLDEIEVLPTMGMEKPYHYRNKAQVPVKMVHGQLET 147 Query: 61 IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKLFQIDY 109 + + + + I+ F I+ ++ + +R + ++R + + Y Sbjct: 148 GFYKRGSHNLVPIEDFYIQDPEIDKAIVVVRDLLRQYHITPYDEQTGKGVIRTVMVRRGY 207 Query: 110 LTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD 165 + + +VT L + + D ++ + + NK K D Sbjct: 208 YSHEMMVVLVTNTKRLPMEKQIVDGIVAGVPEVKSIVQNINDKRTNRLLGNKNKTLWGAD 267 Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNFS 224 + ++L + + SF Q N + + + A +++ YCG G S Sbjct: 268 EIHDQLL----GIDFAISPLSFYQVNPQQTERLYQTAIDNAGLDGNQTVIDAYCGIGTIS 323 Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284 L +A+H +V VEI ++E A++N N + N K V ++E + E Sbjct: 324 LAVAKHAKQVYGVEIVPAAIEDAKHNAKRNGIKNAKFVVGKAEEQFAKWQAE-------- 375 Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILS-TTHTI 341 + + VDPPR GL ++ + ++Y+SCNP +L RD+ + + + Sbjct: 376 ----GLKPDVVIVDPPRKGLAESLIEATGKMGPKKVIYVSCNPATLVRDIKRFADQGYHV 431 Query: 342 ER-LALFDQFPYTRHMECGVLLVR 364 + + DQFP T H+E +L R Sbjct: 432 TKPIQPVDQFPQTTHVESVTVLER 455 >gi|331083695|ref|ZP_08332806.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lachnospiraceae bacterium 6_1_63FAA] gi|330403906|gb|EGG83458.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lachnospiraceae bacterium 6_1_63FAA] Length = 458 Score = 287 bits (734), Expect = 2e-75, Method: Composition-based stats. Identities = 82/385 (21%), Positives = 143/385 (37%), Gaps = 39/385 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDG- 55 L YE+QL K +++ + I P YR +A+F + D Sbjct: 81 GCQLQFLTYEKQLEFKKNKVVGNLERIGGFSDIPVEKVIGMENPWRYRNKAQFPVGKDKE 140 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGSLL-----------INALMIEMMATIRLEPLLRAKL 104 +L + +T + G + + +E + + L+R L Sbjct: 141 GNLITGFYAGRTHSIIPNTNCYLGVEVNEEILNAVLDYMRENHVEPYDEVTGKGLVRHIL 200 Query: 105 FQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRD---ALHARKYQIQLIGRANKTKIC 161 + + T + I+ E + + + N+ Sbjct: 201 IRYGFKTKEIMVCIIINGRKIPNAAGLVEKLKDISGMTSITLNVNTKRNNVILGNEILPL 260 Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220 +DY+ + + + Y+ SF Q N + L A + + +LYCG Sbjct: 261 WGKDYITDYIG----EVKYQISPLSFYQVNPVQTEKLYGTALKYAGLTGKETVWDLYCGI 316 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G SL LA+ +V VEI ++E AR N N + N + ++E A +E Sbjct: 317 GTISLFLAQKAKKVYGVEIVPAAIEDARKNAEINGIENAEFFVGKAEEVLPAKYKED--- 373 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILSTT 338 I VDPPR G D A + + + I+Y+SC+ +L RDL +L Sbjct: 374 --------GVYADVIVVDPPRKGCDGALIETMLSMKPERIVYVSCDSATLARDLKVLCEK 425 Query: 339 -HTIERLALFDQFPYTRHMECGVLL 362 + +E++A+ D FP + H+E VL+ Sbjct: 426 EYQVEKVAVCDMFPGSVHVETVVLM 450 >gi|282917244|ref|ZP_06324999.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus subsp. aureus D139] gi|283771047|ref|ZP_06343938.1| TrmA family RNA methyltransferase [Staphylococcus aureus subsp. aureus H19] gi|282318871|gb|EFB49226.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus subsp. aureus D139] gi|283459641|gb|EFC06732.1| TrmA family RNA methyltransferase [Staphylococcus aureus subsp. aureus H19] Length = 453 Score = 287 bits (734), Expect = 2e-75, Method: Composition-based stats. Identities = 74/388 (19%), Positives = 150/388 (38%), Gaps = 40/388 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLA---FQVPNL--QIFRSEPIHYRMRAEFHIWH-DG 55 L YE QL K +++ + F + + ++P YR +++ + + Sbjct: 82 GCQLQHLSYEAQLEMKKEQVINLFQRKAHFDNSKINDTVGMTDPWRYRNKSQIPVGKNEQ 141 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKL 104 +++ + Q++ + + ++ + ++ L + + + L+R + Sbjct: 142 NEVIMGFYRQRSHDIIDMESCLIQDSQHQEVMNEVKSILKDLNVSIYQEQLKKGLMRHLV 201 Query: 105 FQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQ----LIGRANKTKI 160 + Y T + VT +A E + + + K I + ++ Sbjct: 202 VRTGYHTDEMMIIFVTNGKKWPQKNAVVEKILDAFPNVTSIKQNINDSHSNVIMGRQSIT 261 Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCG 219 +D + ++LT + ++ + SF Q N+ + + + + +L+ YCG Sbjct: 262 LYGKDTIIDQLTDS----TFKISDQSFYQINSEQTEKLYNKAIEYAQLTGNEIVLDTYCG 317 Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279 G L +A H V VE+ ++E A+ N N NN V ++E + Sbjct: 318 IGTIGLYMAPHAKHVYGVEVVPSAIEDAQQNATINQCNNTTFVCGKAEEVILQWKA---- 373 Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST 337 + + VDPPR G D+ + + I+YISCNP + RD +L+ Sbjct: 374 --------QGIKPDVVMVDPPRKGCDETFIQTLLTLEPKRIVYISCNPATQQRDALLLAE 425 Query: 338 THTIERLALFDQFPYTRHMECGVLLVRK 365 + +E + D FP T H+E L K Sbjct: 426 KYQLEEVTPVDMFPQTTHVETVALFNLK 453 >gi|49484138|ref|YP_041362.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus MRSA252] gi|257426029|ref|ZP_05602451.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus subsp. aureus 55/2053] gi|257428702|ref|ZP_05605097.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus subsp. aureus 65-1322] gi|257431312|ref|ZP_05607688.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 68-397] gi|257436934|ref|ZP_05612976.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus subsp. aureus M876] gi|282904528|ref|ZP_06312413.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus subsp. aureus C160] gi|282906301|ref|ZP_06314153.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus subsp. aureus Btn1260] gi|282909217|ref|ZP_06317033.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus subsp. aureus WW2703/97] gi|282911522|ref|ZP_06319322.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus subsp. aureus WBG10049] gi|282914695|ref|ZP_06322480.1| RNA methyltransferase, TrmA family [Staphylococcus aureus subsp. aureus M899] gi|282919732|ref|ZP_06327464.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus subsp. aureus C427] gi|283958658|ref|ZP_06376104.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus subsp. aureus A017934/97] gi|293507772|ref|ZP_06667614.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus subsp. aureus 58-424] gi|293510789|ref|ZP_06669491.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus subsp. aureus M809] gi|293539329|ref|ZP_06672008.1| RNA methyltransferase, TrmA family [Staphylococcus aureus subsp. aureus M1015] gi|295428479|ref|ZP_06821106.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus subsp. aureus EMRSA16] gi|297590050|ref|ZP_06948690.1| 23S rRNA (uracil-5-)-methyltransferase [Staphylococcus aureus subsp. aureus MN8] gi|81650792|sp|Q6GFG0|Y1988_STAAR RecName: Full=Uncharacterized RNA methyltransferase SAR1988 gi|49242267|emb|CAG40974.1| putative RNA methyltransferase [Staphylococcus aureus subsp. aureus MRSA252] gi|257271172|gb|EEV03329.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus subsp. aureus 55/2053] gi|257274346|gb|EEV05858.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus subsp. aureus 65-1322] gi|257277961|gb|EEV08617.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 68-397] gi|257283723|gb|EEV13848.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus subsp. aureus M876] gi|282316370|gb|EFB46747.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus subsp. aureus C427] gi|282321409|gb|EFB51735.1| RNA methyltransferase, TrmA family [Staphylococcus aureus subsp. aureus M899] gi|282324531|gb|EFB54843.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus subsp. aureus WBG10049] gi|282326785|gb|EFB57082.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus subsp. aureus WW2703/97] gi|282330498|gb|EFB60015.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus subsp. aureus Btn1260] gi|282595084|gb|EFC00051.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus subsp. aureus C160] gi|283789698|gb|EFC28520.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus subsp. aureus A017934/97] gi|290919864|gb|EFD96933.1| RNA methyltransferase, TrmA family [Staphylococcus aureus subsp. aureus M1015] gi|291094835|gb|EFE25103.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus subsp. aureus 58-424] gi|291466420|gb|EFF08944.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus subsp. aureus M809] gi|295127461|gb|EFG57100.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus subsp. aureus EMRSA16] gi|297577178|gb|EFH95892.1| 23S rRNA (uracil-5-)-methyltransferase [Staphylococcus aureus subsp. aureus MN8] gi|312437637|gb|ADQ76708.1| 23S rRNA (uracil-5-)-methyltransferase [Staphylococcus aureus subsp. aureus TCH60] gi|315193426|gb|EFU23823.1| putative RNA methyltransferase [Staphylococcus aureus subsp. aureus CGS00] Length = 453 Score = 287 bits (734), Expect = 2e-75, Method: Composition-based stats. Identities = 74/388 (19%), Positives = 150/388 (38%), Gaps = 40/388 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLA---FQVPNL--QIFRSEPIHYRMRAEFHIWH-DG 55 L YE QL K +++ + F + + ++P YR +++ + + Sbjct: 82 GCQLQHLSYEAQLEMKKEQVINLFQRKAHFDNSKINDTVGMTDPWRYRNKSQIPVGKNEQ 141 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKL 104 +++ + Q++ + + + + ++ L + + + L+R + Sbjct: 142 NEVIMGFYRQRSHDIIDMGSCLIQDSQHQEVMNEVKSILKDLNVSIYQEQLKKGLMRHLV 201 Query: 105 FQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQ----LIGRANKTKI 160 + Y T + VT + +A E + + + K I + ++ Sbjct: 202 VRTGYHTDEMMVIFVTNGKNWPQKNAVVEKILDAFPNVTSIKQNINDSHSNVIMGRQSIT 261 Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCG 219 +D + ++LT + ++ + SF Q N+ + + + ++ L+ YCG Sbjct: 262 LYGKDTIIDQLTDS----TFKISDQSFYQINSEQTEKLYNKAIEYAQLTGNEVVLDTYCG 317 Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279 G L +A H V VE+ ++E A+ N N NN V ++E + Sbjct: 318 IGTIGLYMAPHAKHVYGVEVVPSAIEDAQQNATINQCNNTTFVCGKAEEVILQWKA---- 373 Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST 337 + + VDPPR G D+ + + I+YISCNP + RD +L+ Sbjct: 374 --------QGIKPDVVMVDPPRKGCDETFIQTLLTLEPKRIVYISCNPSTQQRDALLLAE 425 Query: 338 THTIERLALFDQFPYTRHMECGVLLVRK 365 + +E + D FP T H+E L K Sbjct: 426 KYQLEEVTPVDMFPQTTHVETVALFNLK 453 >gi|331089004|ref|ZP_08337911.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lachnospiraceae bacterium 3_1_46FAA] gi|330406456|gb|EGG85969.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lachnospiraceae bacterium 3_1_46FAA] Length = 500 Score = 287 bits (734), Expect = 2e-75, Method: Composition-based stats. Identities = 88/411 (21%), Positives = 149/411 (36%), Gaps = 54/411 (13%) Query: 2 SGTLLID-QYEQQLAEKVDRLRQMMLAFQ---------VPNLQIFRSEPIHYRMRAEFHI 51 G + + YE+QL K ++R + I P +YR +A+F Sbjct: 99 GGCQIQEMSYEKQLEFKERKVRGNLERIGGFSSELLECTKEPIIGMETPFYYRNKAQFPF 158 Query: 52 WHDG-DDLYHIMFDQQTKERMRIDYFMPGSLL-----------INALMIEMMATIRLEPL 99 D + + +T + + + G+ + + I L Sbjct: 159 GTDKEGNPVTGFYAGRTHDIIANTNCILGAAVNEHILESILDFMKKYKIRSYDEKTGTGL 218 Query: 100 LRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHAR----------KYQI 149 R L + + T + V W L + L + Sbjct: 219 FRHVLLRYGFTTKEIMVCFVVNKDKADKSGEWFPHQKELVEELAKIDGMTSITASPNTKR 278 Query: 150 QLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGI 209 + + ++ + Y+ + + ++ Y+ SF Q N + L G+ Sbjct: 279 TNVIMGDTFEVLWGQGYITDYIG----SVKYQISPLSFYQVNPVQTEKLYSQALE-YAGL 333 Query: 210 QGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267 +GD + +LYCG G SL LA+ +V VEI P+++ AR N N + N + S+ Sbjct: 334 KGDETVWDLYCGIGTISLFLAQKAKQVYGVEIVPPAIDDARENALLNGIENAQFFVGKSE 393 Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNP 325 E ++ E + I VDPPR G D + + I+Y+SC+ Sbjct: 394 EILPKYYKDYE----EQHGGEKAHADVIVVDPPRKGCDAKLLDTILKMQPERIVYVSCDS 449 Query: 326 DSLCRDLSILST---------THTIERLALFDQFPYTRHMECGVLLVRKPS 367 +L RDL IL + IE+ DQFP T H+E VL+ +K S Sbjct: 450 ATLARDLKILCEGAQEDEKTAGYQIEKWRAVDQFPMTTHVETIVLIQKKNS 500 >gi|311067148|ref|YP_003972071.1| putative RNA methyltransferase [Bacillus atrophaeus 1942] gi|310867665|gb|ADP31140.1| putative RNA methyltransferase [Bacillus atrophaeus 1942] Length = 460 Score = 287 bits (734), Expect = 2e-75, Method: Composition-based stats. Identities = 73/392 (18%), Positives = 145/392 (36%), Gaps = 42/392 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-------VPNLQIFRSEPIHYRMRAEFHIWHD 54 L YE QL K +++ ++ + + +P +YR +A+ + Sbjct: 85 GCQLQHMTYEGQLLFKQKQVKDVLERIGKLDLSNVTVHPTLGMEDPWNYRNKAQVPVGER 144 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEM-----------MATIRLEPLLRAK 103 L + Q++ + + + + + + + R + LR Sbjct: 145 EGGLVAGFYQQRSHDIIDMSACLIQQSKNDEAVQAVKDICATYGVKAYNEERHKGWLRHI 204 Query: 104 LFQIDYLTSQSDQAIVTL---IYHR-LLDDAWRECAIRLRDALHARKYQIQLIGRANKTK 159 + + +T + +T H+ + + ++ + + N+T Sbjct: 205 MVRYGVVTGEMMIVFITRTKDFPHKAKIIEDITAQFPHVKSIVQNINPNKTNVIFGNETN 264 Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYC 218 + +Y+ + + + + SF Q N + + L A + +++ YC Sbjct: 265 VIWGEEYIYDLIG----DVKFAISARSFYQVNPEQTKVLYDKALEYAELKGEETVIDAYC 320 Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278 G G SL LA+ +V VEI ++E A+ N N + N + ++ E Sbjct: 321 GIGTISLFLAKQAKKVYGVEIVPEAIEDAKRNAELNGITNAEFAVGEAETVIPKWYEE-- 378 Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILS 336 T+ VDPPR G D+A + + ++Y+SCNP +L RDL +L Sbjct: 379 ----------GITADTLVVDPPRKGCDEALLRTIVEMKPKRVVYVSCNPGTLARDLRVLE 428 Query: 337 -TTHTIERLALFDQFPYTRHMECGVLLVRKPS 367 + + D FP+T H+E V L + S Sbjct: 429 DGGYATLEVQPVDMFPHTNHVEVTVKLTLRGS 460 >gi|21283567|ref|NP_646655.1| hypothetical protein MW1838 [Staphylococcus aureus subsp. aureus MW2] gi|49486716|ref|YP_043937.1| putative RNA methyltransferase [Staphylococcus aureus subsp. aureus MSSA476] gi|297208925|ref|ZP_06925329.1| 23S rRNA (uracil-5-)-methyltransferase [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300913018|ref|ZP_07130456.1| 23S rRNA (uracil-5-)-methyltransferase [Staphylococcus aureus subsp. aureus TCH70] gi|50401765|sp|Q8NVT4|Y1838_STAAW RecName: Full=Uncharacterized RNA methyltransferase MW1838 gi|81649033|sp|Q6G836|Y1819_STAAS RecName: Full=Uncharacterized RNA methyltransferase SAS1819 gi|21205008|dbj|BAB95703.1| MW1838 [Staphylococcus aureus subsp. aureus MW2] gi|49245159|emb|CAG43625.1| putative RNA methyltransferase [Staphylococcus aureus subsp. aureus MSSA476] gi|296886415|gb|EFH25344.1| 23S rRNA (uracil-5-)-methyltransferase [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300885796|gb|EFK81003.1| 23S rRNA (uracil-5-)-methyltransferase [Staphylococcus aureus subsp. aureus TCH70] gi|329731488|gb|EGG67851.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus subsp. aureus 21193] Length = 453 Score = 287 bits (734), Expect = 2e-75, Method: Composition-based stats. Identities = 74/388 (19%), Positives = 150/388 (38%), Gaps = 40/388 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLA---FQVPNL--QIFRSEPIHYRMRAEFHIWH-DG 55 L YE QL K +++ + F + + ++P YR +++ + + Sbjct: 82 GCQLQHLSYEAQLEMKKEQVINLFQRKAHFDNSKINDTVGMTDPWRYRNKSQIPVGKNEQ 141 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKL 104 +++ + Q++ + + ++ + ++ L + + + L+R + Sbjct: 142 NEVIMGFYRQRSHDIIDMESCLIQDSQHQEVMNEVKSILKDLNVSIYQEQLKKGLMRHLV 201 Query: 105 FQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQ----LIGRANKTKI 160 + Y T + VT +A E + + + K I + ++ Sbjct: 202 VRTGYHTDEMMIIFVTNGKKWPQKNAVVEKILDAFPNVTSIKQNINDSHSNVIMGRQSIT 261 Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCG 219 +D + ++LT + ++ + SF Q N+ + + + ++ L+ YCG Sbjct: 262 LYGKDTIIDQLTDS----TFKISDQSFYQINSEQTEKLYNKAIEYAQLTGNEVVLDTYCG 317 Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279 G L +A H V VE+ ++E A+ N N NN V ++E + Sbjct: 318 IGTIGLYMAPHAKHVYGVEVVPSAIEDAQQNATINQCNNTTFVCGKAEEVILQWKA---- 373 Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST 337 + + VDPPR G D+ + + I+YISCNP + RD +L+ Sbjct: 374 --------QGIKPDVVMVDPPRKGCDETFIQTLLTLEPKRIVYISCNPATQQRDALLLAE 425 Query: 338 THTIERLALFDQFPYTRHMECGVLLVRK 365 + +E + D FP T H+E L K Sbjct: 426 KYQLEEVTPVDMFPQTTHVETVALFNLK 453 >gi|257876913|ref|ZP_05656566.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus casseliflavus EC20] gi|257811079|gb|EEV39899.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus casseliflavus EC20] Length = 474 Score = 287 bits (734), Expect = 2e-75, Method: Composition-based stats. Identities = 84/388 (21%), Positives = 153/388 (39%), Gaps = 46/388 (11%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAF-QVPNL----QIFRSEPIHYRMRAEFHIWHDGDDLY 59 L Y++QLA K ++ ++ ++P + I +P YR +A+ + L Sbjct: 106 LSHLSYDKQLAFKQQQVENVLAKIAKLPEIKVNAPIGMEKPFGYRNKAQIPVQKIHGKLT 165 Query: 60 HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKLFQID 108 + + + + I+ F I+ +I++ ++ E LR + + Sbjct: 166 TGFYRKNSHTLVPIEDFYIQDPNIDQAIIKVRDILQRFNVKAYNEEAHEGFLRHIVVRRG 225 Query: 109 YLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANK-------TKIC 161 + S + +V L+ + E A + + + IQ I ++ Sbjct: 226 H---HSGEMMVVLVTRKPKFFKGEEIAEVIHEEIPEVVSVIQNINEEKTNVIMGEFERVL 282 Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGN 220 + +D++L ++ SF Q N + + + D +++ Y G Sbjct: 283 YGKSSIDDQLLGK----TFQISAKSFYQVNTAQTEVLYQTAFEMAHLSENDIVVDAYAGI 338 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G + LA VL +E+ +V A+ N N V NV +++ RE Sbjct: 339 GTIGISLADRVKEVLGMEVIPEAVNDAKANAKRNGVENVHYFIGKAEKIMPQWLRE---- 394 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSIL-ST 337 + +FVDPPR GLD + + A I+YISCNP +L RDL++ Sbjct: 395 --------GIQPTVVFVDPPRKGLDASFIETTAAVKPERIVYISCNPATLARDLALFAEE 446 Query: 338 THTIERLALFDQFPYTRHMECGVLLVRK 365 + + + D FP T H+EC VLL R+ Sbjct: 447 GYVTKEVQPVDLFPQTTHVECVVLLERR 474 >gi|33355823|gb|AAQ16244.1| RNA methyl transferase-like [Enterococcus faecalis] Length = 571 Score = 286 bits (733), Expect = 3e-75, Method: Composition-based stats. Identities = 83/385 (21%), Positives = 154/385 (40%), Gaps = 41/385 (10%) Query: 10 YEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 Y QL+ K ++ +M I ++P HYR +A+ + + L F Sbjct: 103 YGAQLSFKTQQVENVMQRVAKLQEVPVLPTIGMNDPWHYRNKAQIPVRKIDNQLQTGFFR 162 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKLFQIDYLTSQ 113 + + + + +++F I+A ++++ +R LR + + Y T + Sbjct: 163 KNSHDLIPMEHFYIQDPEIDAAIVKIRDIMRKYSVKPYNESDNTGNLRHIVVRRGYHTGE 222 Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD----YVDE 169 ++T L + L +A+ +Q + T + + + E Sbjct: 223 MMVVLITRTP--KLFPISKIVPDIL-EAIPEVVSIVQNVNPKR-TNVIFGDETILLHGSE 278 Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLA 228 ++T L + SF Q N M + V + +++ YCG G L LA Sbjct: 279 KITDTIFDLKFEISARSFYQVNPQQTEVMYQKVKEYAALTGNEIVVDAYCGIGTIGLTLA 338 Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288 + +V +E+ + +V+ A N N++ N ++E L + + Sbjct: 339 QDAKQVYGIEVIEEAVKDAENNAKLNNIENATFTAGLAEEL------------LPKLVEN 386 Query: 289 SYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STTHTIERLA 345 + + VDPPR GLD V + I+Y+SCNP +L RD+++L + + + Sbjct: 387 GLQPDVVVVDPPRKGLDGQLVNTLIETQPERIVYVSCNPATLARDIALLTEGGYEAKEIQ 446 Query: 346 LFDQFPYTRHMECGVLLV-RKPSGW 369 D FP T H+E VLL +KP G Sbjct: 447 PVDNFPQTTHIETVVLLSHKKPDGH 471 >gi|241889868|ref|ZP_04777166.1| 23S rRNA-methyltransferase RumA [Gemella haemolysans ATCC 10379] gi|241863490|gb|EER67874.1| 23S rRNA-methyltransferase RumA [Gemella haemolysans ATCC 10379] Length = 446 Score = 286 bits (733), Expect = 3e-75, Method: Composition-based stats. Identities = 77/386 (19%), Positives = 156/386 (40%), Gaps = 39/386 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-----IFRSEPIHYRMRAEFHIWHDGD 56 L+ YE+QL K +++ +M + + + HYR ++ + Sbjct: 75 GANLVHMNYEEQLKFKKKKVQNVMDKALGKDYIEVLDTLGMEDGYHYRNKSVIPVQKVNG 134 Query: 57 DLYHIMFDQQTKERMRIDYFMPG-----------SLLINALMIEMMATIRLEPLLRAKLF 105 ++ + ++ + + I+ LI+ L + + +R +F Sbjct: 135 EVKMGYYKPRSHDVVNIEKCFIQYDEHNVLMNKLRSLISELNLSVYDENSHSGAIRHIMF 194 Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDAWRECAI---RLRDALHARKYQIQLIGRANKTKICL 162 + + L S+ IV LD+ + + R+ + + + +KT+ Sbjct: 195 RTNTLKSEIMVGIVAKEKFNKLDEFVEKISKLDDRIVSIMLNINDKKTNVIFGDKTENLF 254 Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNG 221 +DY+ + L + ++ SF Q N + L + + D +++ YCG G Sbjct: 255 GKDYITDTL----DGIDFKISLRSFYQVNPVQTEVLYSKALELAELKETDTIIDAYCGIG 310 Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281 SL A+ +V +EI + +V A N N++ NV+ + S++ + + Sbjct: 311 TISLFAAKKVKKVYGIEIVEAAVLDACENAKNNNITNVEFLLGKSEDVIKKLIS------ 364 Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILST-T 338 + + VDPPR G +++ + + A I+Y+SCNP +L RD+ I+ Sbjct: 365 ------QDVKLDAVIVDPPRKGCEESFLRDLAAMDIEKIVYVSCNPATLARDMEIMRGLG 418 Query: 339 HTIERLALFDQFPYTRHMECGVLLVR 364 + + + D FP T H+E VLL + Sbjct: 419 YKLGSVQPVDMFPGTYHVETVVLLSK 444 >gi|302333562|gb|ADL23755.1| putative RNA methyltransferase [Staphylococcus aureus subsp. aureus JKD6159] Length = 453 Score = 286 bits (733), Expect = 3e-75, Method: Composition-based stats. Identities = 74/388 (19%), Positives = 151/388 (38%), Gaps = 40/388 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLA---FQVPNL--QIFRSEPIHYRMRAEFHIWH-DG 55 L YE QL K +++ + F + + ++P YR +++ + + Sbjct: 82 GCQLQHLSYESQLEMKKEQVINLFQRKAQFDNSKINDTVGMTDPWRYRNKSQIPVGKNEQ 141 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKL 104 +++ + Q++ + + ++ + ++ L + + + L+R + Sbjct: 142 NEVIMGFYRQRSHDIIDMESCLIQDSQHQEVMNEVKSILKDLNVSIYQEQLKKGLMRHLV 201 Query: 105 FQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQ----LIGRANKTKI 160 + Y T + VT +A E + + + K I + ++ Sbjct: 202 VRTGYHTDEMMIIFVTNGKKWPQKNAVVEKILDAFPNVTSIKQNINDSHSNVIMGRQSIT 261 Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCG 219 +D + ++LT + ++ + SF Q N+ + + + ++ L+ YCG Sbjct: 262 LYGKDTIIDQLTDS----TFKISDQSFYQINSEQTEKLYNKAIEYAQLTGNEVVLDTYCG 317 Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279 G L +A H V VE+ ++E A+ N N NN V ++E + Sbjct: 318 IGTIGLYMAPHAKHVYGVEVVPSAIEDAQQNATINQCNNTTFVCGKAEEVILQWKA---- 373 Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST 337 + + VDPPR G D+ + + I+YISCNP + RD+ +L+ Sbjct: 374 --------QGIKPDVVMVDPPRKGCDETFIQTLLTLEPKRIVYISCNPATQQRDVLLLAE 425 Query: 338 THTIERLALFDQFPYTRHMECGVLLVRK 365 + +E + D FP T H+E L K Sbjct: 426 KYQLEEVTPVDMFPQTTHVETVALFNLK 453 >gi|260587415|ref|ZP_05853328.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Blautia hansenii DSM 20583] gi|260542282|gb|EEX22851.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Blautia hansenii DSM 20583] Length = 475 Score = 286 bits (733), Expect = 3e-75, Method: Composition-based stats. Identities = 82/385 (21%), Positives = 143/385 (37%), Gaps = 39/385 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDG- 55 L YE+QL K +++ + I P YR +A+F + D Sbjct: 98 GCQLQFLTYEKQLEFKKNKVVGNLERIGGFSDIPVEKVIGMENPWRYRNKAQFPVGKDKE 157 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGSLL-----------INALMIEMMATIRLEPLLRAKL 104 +L + +T + G + + +E + + L+R L Sbjct: 158 GNLITGFYAGRTHSIIPNTNCYLGVEVNEEILNAVLDYMRENHVEPYDEVTGKGLVRHIL 217 Query: 105 FQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRD---ALHARKYQIQLIGRANKTKIC 161 + + T + I+ E + + + N+ Sbjct: 218 IRYGFKTKEIMVCIIINGRKIPNAAGLVEKLKDISGMTSITLNVNTKRNNVILGNEILPL 277 Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220 +DY+ + + + Y+ SF Q N + L A + + +LYCG Sbjct: 278 WGKDYITDYIG----EVKYQISPLSFYQVNPVQTEKLYGTALKYAGLTGKETVWDLYCGI 333 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G SL LA+ +V VEI ++E AR N N + N + ++E A +E Sbjct: 334 GTISLFLAQKAKKVYGVEIVPAAIEDARKNAEINGIENAEFFVGKAEEVLPAKYKED--- 390 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILSTT 338 I VDPPR G D A + + + I+Y+SC+ +L RDL +L Sbjct: 391 --------GVYADVIVVDPPRKGCDGALIETMLSMKPERIVYVSCDSATLARDLKVLCEK 442 Query: 339 -HTIERLALFDQFPYTRHMECGVLL 362 + +E++A+ D FP + H+E VL+ Sbjct: 443 EYQVEKVAVCDMFPGSVHVETVVLM 467 >gi|291535466|emb|CBL08578.1| 23S rRNA m(5)U-1939 methyltransferase [Roseburia intestinalis M50/1] Length = 565 Score = 286 bits (733), Expect = 3e-75, Method: Composition-based stats. Identities = 87/398 (21%), Positives = 154/398 (38%), Gaps = 41/398 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ--VPNLQ-------IFRSEPIHYRMRAEFHIW 52 + YE+QL K +++R ++ P L + EP YR +A+F I Sbjct: 79 GCQIQALDYEKQLEFKQNKVRGNLIRIGGFAPELIDRIMLPVVGMKEPYRYRNKAQFPIG 138 Query: 53 HDGD-DLYHIMFDQQTKERMRIDYFMPGSL----LINA-------LMIEMMATIRLEPLL 100 D D + + +T + ++ G ++N + + L+ Sbjct: 139 ADKDGNPVAGFYAARTHSIIPVNDCKLGVEENQIILNEVLSYMKECHVASYDENTGKGLV 198 Query: 101 RAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRL---RDALHARKYQIQLIGRANK 157 R L + + T + ++ + + + + + + + + Sbjct: 199 RHVLIRYGFTTKELMVCVIINGNSLPKVEKLIDRLTAIEGMKSISINQNTKKTNVILGDV 258 Query: 158 TKICLDRDYVDERLTV--------AGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKG 208 TK Y+ + + + + Y SF Q N + L A Sbjct: 259 TKCIWGDPYITDMIHLRDTKDFSLTDTAVAYHISPQSFYQVNPVQTEKLYSLALDYAGLT 318 Query: 209 IQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268 + + +LYCG G SL LA+ +V VEI ++E A+ N A N +NN + ++E Sbjct: 319 GKETVWDLYCGIGTISLFLAQKAGKVYGVEIVPQAIEDAKNNAALNGINNAEFFVGKAEE 378 Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPD 326 A + + KD D I VDPPR G D + M++ P I+Y+SC+ Sbjct: 379 VLPAF-----YEKKKDTDADMLHPDVIVVDPPRKGCDGVCLETMLKMQPERIVYVSCDSA 433 Query: 327 SLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLV 363 +L RDL +L + + ++ DQF T H+E VLL Sbjct: 434 TLARDLKVLCEGGYELCKVRAVDQFGNTTHVETVVLLS 471 >gi|239825990|ref|YP_002948614.1| RNA methyltransferase, TrmA family [Geobacillus sp. WCH70] gi|239806283|gb|ACS23348.1| RNA methyltransferase, TrmA family [Geobacillus sp. WCH70] Length = 460 Score = 286 bits (733), Expect = 3e-75, Method: Composition-based stats. Identities = 80/390 (20%), Positives = 146/390 (37%), Gaps = 41/390 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54 L Y+ QL EK D + Q ++ I +P HYR +++F + Sbjct: 86 GCQLQHLDYQAQLREKRDIVIQAFERHCRLPIETLEIRPTIGMDDPWHYRNKSQFQVGTK 145 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGSLLINA-----------LMIEMMATIRLEPLLRAK 103 + ++ + + I + N L I + L+R Sbjct: 146 KGAVIAGLYGLNSHRLIDIPECVIQHPATNRVTNIVKMILQDLRIPIYNERAQTGLVRTI 205 Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD 163 + ++ + T ++T + + ++ L K +Q I KT + Sbjct: 206 VARVGFHTGDVQLVLITTKKEIPRKELLID---EIKRRLPEVKSIVQNIN-GQKTSLIFG 261 Query: 164 RDY----VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELYC 218 + +E + L + +F Q N V + + V AA +++ YC Sbjct: 262 EESFLLEGEEYIQEVLGDLSFELSARAFFQLNPVQTVKLYDEVKKAAALTGTEKVVDAYC 321 Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278 G G L LA+ + ++ ++E A+ N + N V ++ +E Sbjct: 322 GVGTIGLWLAKDAGEIRGMDTIPEAIEDAKKNAKKHGFTNAMYVTGKAEALLPKWVKE-- 379 Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILS 336 ++ I VDPPR+G D + + ++Y+SCNP SL RD+ +LS Sbjct: 380 ----------GWKPDVIVVDPPRTGCDQQLLQTILRVKPKTVVYVSCNPSSLARDVDVLS 429 Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVRKP 366 +T++ + D FP+T H+EC LV K Sbjct: 430 ERYTVDYIQPVDMFPHTAHVECVSRLVLKN 459 >gi|15924887|ref|NP_372421.1| RNA methyltransferase-like protein [Staphylococcus aureus subsp. aureus Mu50] gi|15927471|ref|NP_375004.1| hypothetical protein SA1713 [Staphylococcus aureus subsp. aureus N315] gi|148268369|ref|YP_001247312.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus JH9] gi|150394431|ref|YP_001317106.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus JH1] gi|156980213|ref|YP_001442472.1| RNA methyltransferase-like protein [Staphylococcus aureus subsp. aureus Mu3] gi|253734995|ref|ZP_04869160.1| TrmA family RNA methyltransferase [Staphylococcus aureus subsp. aureus TCH130] gi|255006684|ref|ZP_05145285.2| RNA methyltransferase-like protein [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257793749|ref|ZP_05642728.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus A9781] gi|258408891|ref|ZP_05681173.1| RNA methyltransferase [Staphylococcus aureus A9763] gi|258421005|ref|ZP_05683936.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus A9719] gi|258430023|ref|ZP_05688393.1| RNA methyltransferase [Staphylococcus aureus A9299] gi|258443459|ref|ZP_05691801.1| RNA methyltransferase [Staphylococcus aureus A8115] gi|258445317|ref|ZP_05693508.1| RNA methyltransferase [Staphylococcus aureus A6300] gi|258447881|ref|ZP_05696015.1| RNA methyltransferase [Staphylococcus aureus A6224] gi|258453314|ref|ZP_05701299.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus A5937] gi|269203550|ref|YP_003282819.1| rRNA methyltransferase RumA [Staphylococcus aureus subsp. aureus ED98] gi|282894564|ref|ZP_06302792.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus A8117] gi|282928070|ref|ZP_06335677.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus A10102] gi|295407277|ref|ZP_06817076.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus A8819] gi|296276906|ref|ZP_06859413.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus MR1] gi|297246197|ref|ZP_06930048.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus A8796] gi|51316731|sp|Q7A4Q9|Y1713_STAAN RecName: Full=Uncharacterized RNA methyltransferase SA1713 gi|51316908|sp|Q99SY9|Y1897_STAAM RecName: Full=Uncharacterized RNA methyltransferase SAV1897 gi|13701690|dbj|BAB42983.1| SA1713 [Staphylococcus aureus subsp. aureus N315] gi|14247669|dbj|BAB58059.1| RNA methyltransferase homolog [Staphylococcus aureus subsp. aureus Mu50] gi|147741438|gb|ABQ49736.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus subsp. aureus JH9] gi|149946883|gb|ABR52819.1| RNA methyltransferase, TrmA family [Staphylococcus aureus subsp. aureus JH1] gi|156722348|dbj|BAF78765.1| RNA methyltransferase homolog [Staphylococcus aureus subsp. aureus Mu3] gi|253727177|gb|EES95906.1| TrmA family RNA methyltransferase [Staphylococcus aureus subsp. aureus TCH130] gi|257787721|gb|EEV26061.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus A9781] gi|257840338|gb|EEV64800.1| RNA methyltransferase [Staphylococcus aureus A9763] gi|257842953|gb|EEV67371.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus A9719] gi|257849617|gb|EEV73585.1| RNA methyltransferase [Staphylococcus aureus A9299] gi|257851344|gb|EEV75284.1| RNA methyltransferase [Staphylococcus aureus A8115] gi|257855835|gb|EEV78759.1| RNA methyltransferase [Staphylococcus aureus A6300] gi|257858813|gb|EEV81682.1| RNA methyltransferase [Staphylococcus aureus A6224] gi|257864522|gb|EEV87265.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus A5937] gi|262075840|gb|ACY11813.1| rRNA methyltransferase RumA [Staphylococcus aureus subsp. aureus ED98] gi|282590134|gb|EFB95215.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus A10102] gi|282763051|gb|EFC03183.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus A8117] gi|285817577|gb|ADC38064.1| RNA methyltransferase, TrmA family [Staphylococcus aureus 04-02981] gi|294967852|gb|EFG43882.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus A8819] gi|297176904|gb|EFH36161.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus A8796] gi|312830269|emb|CBX35111.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315129294|gb|EFT85288.1| hypothetical protein CGSSa03_08530 [Staphylococcus aureus subsp. aureus CGS03] gi|329724825|gb|EGG61329.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus subsp. aureus 21172] Length = 453 Score = 286 bits (733), Expect = 3e-75, Method: Composition-based stats. Identities = 75/388 (19%), Positives = 150/388 (38%), Gaps = 40/388 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLA---FQVPNL--QIFRSEPIHYRMRAEFHIWH-DG 55 L YE QL K +++ + F + + ++P YR +++ + + Sbjct: 82 GCQLQHLSYEAQLEMKKEQVINLFQRKAHFDNSKINDTVGMTDPWRYRNKSQIPVGKNEQ 141 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKL 104 +++ + Q++ + + ++ + ++ L + + + L+R + Sbjct: 142 NEVIMGFYRQRSHDIIDMESCLIQDSQHQEVMNEVKSILKDLNVSIYQEQLKKGLMRHLV 201 Query: 105 FQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQ----LIGRANKTKI 160 + Y T + VT +A E + + + K I + ++ Sbjct: 202 VRTGYHTDEMMIIFVTNGKKWPQKNAVVEKILDAFPNVTSIKQNINDSHSNVIMGRQSIT 261 Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCG 219 +D + ++LT + ++ + SF Q N+ + + + ++ L+ YCG Sbjct: 262 LYGKDTIIDQLTDS----TFKISDQSFYQINSEQTEKLYNKAIEYAQLTGNEVVLDTYCG 317 Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279 G L +A H V VE+ S+E A+ N N NN V ++E + Sbjct: 318 IGTIGLYMAPHAKHVYGVEVVPSSIEDAQQNATINQCNNTTFVCGKAEEVILQWKA---- 373 Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST 337 + + VDPPR G D+ + + I+YISCNP + RD +L+ Sbjct: 374 --------QGIKPDVVMVDPPRKGCDETFIQTLLTLEPKRIVYISCNPATQQRDALLLAE 425 Query: 338 THTIERLALFDQFPYTRHMECGVLLVRK 365 + +E + D FP T H+E L K Sbjct: 426 KYQLEEVTPVDMFPQTTHVETVALFNLK 453 >gi|294614134|ref|ZP_06694055.1| 23S rRNA (uracil-5-)-methyltransferase [Enterococcus faecium E1636] gi|291592984|gb|EFF24572.1| 23S rRNA (uracil-5-)-methyltransferase [Enterococcus faecium E1636] Length = 457 Score = 286 bits (733), Expect = 3e-75, Method: Composition-based stats. Identities = 78/384 (20%), Positives = 154/384 (40%), Gaps = 40/384 (10%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGDDLY 59 L +YEQQL K ++ +M + +EP YR +A+ + L Sbjct: 88 LAHLKYEQQLVFKQKQVEHVMAKIAKMPEVPVLPTVGMAEPFGYRNKAQIPVRRIDGQLA 147 Query: 60 HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIR-----------LEPLLRAKLFQID 108 + + + + + I+ F +I+ + + ++ E LR + + Sbjct: 148 TGFYKKNSHDLVPIEDFYIQDPVIDQAIKVVRDILQRFQVRGYNEEKNEGQLRHIIIRRG 207 Query: 109 YLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR 164 + + +VT + + +A E + + + + +K K+ R Sbjct: 208 HYFHEMMVVLVTRKEKFFKSKEIAEAIHEELPEVVSVIQNINEEKTNVILGDKEKVLYGR 267 Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNF 223 DY++++L YR SF Q N ++ + + + + D +++ Y G G Sbjct: 268 DYIEDQLLGK----TYRISAKSFYQVNTQQAEYLYQTAIEFAELDKKDIVIDAYSGIGTI 323 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 L LA D+V +E+ ++E A++N N + NV +++ + + Sbjct: 324 GLSLADRVDKVYGMEVIPEAIEDAQFNALNNKIENVHYEVGKAEKVMKKWQE-------- 375 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCRDLSILST-THT 340 + I VDPPR GLD + ++ P I+YISCNP + RD + + + Sbjct: 376 ----KGIKPSVIVVDPPRKGLDHHFIESAIEMSPERIVYISCNPATFARDTKLFAEAGYA 431 Query: 341 IERLALFDQFPYTRHMECGVLLVR 364 ++++ D FP T H+E V+ Sbjct: 432 VKKVQPVDLFPQTHHIELVASFVK 455 >gi|16077741|ref|NP_388555.1| RNA methyltransferase [Bacillus subtilis subsp. subtilis str. 168] gi|221308510|ref|ZP_03590357.1| hypothetical protein Bsubs1_03798 [Bacillus subtilis subsp. subtilis str. 168] gi|221312833|ref|ZP_03594638.1| hypothetical protein BsubsN3_03754 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221317757|ref|ZP_03599051.1| hypothetical protein BsubsJ_03708 [Bacillus subtilis subsp. subtilis str. JH642] gi|221322036|ref|ZP_03603330.1| hypothetical protein BsubsS_03794 [Bacillus subtilis subsp. subtilis str. SMY] gi|50401309|sp|O31503|YEFA_BACSU RecName: Full=Uncharacterized RNA methyltransferase yefA gi|2632987|emb|CAB12493.1| putative RNA methyltransferase [Bacillus subtilis subsp. subtilis str. 168] Length = 459 Score = 286 bits (733), Expect = 3e-75, Method: Composition-based stats. Identities = 74/390 (18%), Positives = 145/390 (37%), Gaps = 42/390 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-------VPNLQIFRSEPIHYRMRAEFHIWHD 54 L YE QL K +++ ++ + + +P +YR +A+ + Sbjct: 85 GCQLQHMTYEGQLLFKQKQVKDVLERIGKLDLSKVTVHPTLGMEDPWNYRNKAQVPVGER 144 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGS-----------LLINALMIEMMATIRLEPLLRAK 103 L + Q++ + + + + + ++ R + LR Sbjct: 145 EGGLVAGFYQQRSHDIIDMSACLIQQSKNDEAVQAVKDICANYGVKAYNEERHKGWLRHI 204 Query: 104 LFQIDYLTSQSDQAIVTL---IYHR-LLDDAWRECAIRLRDALHARKYQIQLIGRANKTK 159 + + +T + +T H+ + + ++ + + N+T Sbjct: 205 MVRYGVVTGEMMIVFITRTSDFPHKAKIIEDITAQFPHVKSIVQNINPNKTNVIFGNETN 264 Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYC 218 + +Y+ + + + + SF Q N + + L A + +++ YC Sbjct: 265 VIWGEEYIYDLIG----DVKFAISARSFYQVNPEQTKVLYDKALEYAELQGEETVIDAYC 320 Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278 G G SL LA+ +V VEI ++E A+ N N N + ++ E Sbjct: 321 GIGTISLFLAKQAKKVYGVEIVPEAIEDAKRNAELNGNTNAEFAVGEAETVIPKWYEE-- 378 Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILS 336 T+ VDPPR G D+A + + ++Y+SCNP +L RDL +L Sbjct: 379 ----------GITADTLVVDPPRKGCDEALLRTIVEMKPKRVVYVSCNPGTLARDLRVLE 428 Query: 337 -TTHTIERLALFDQFPYTRHMECGVLLVRK 365 + + D FP+T H+EC VL+ K Sbjct: 429 DGGYVTREVQPVDMFPHTNHVECCVLIKLK 458 >gi|28212064|ref|NP_783008.1| tRNA (uracil-5-) -methyltransferase [Clostridium tetani E88] gi|50401759|sp|Q891A0|Y2481_CLOTE RecName: Full=Uncharacterized RNA methyltransferase CTC_02481 gi|28204507|gb|AAO36945.1| tRNA (uracil-5-) -methyltransferase [Clostridium tetani E88] Length = 460 Score = 286 bits (733), Expect = 3e-75, Method: Composition-based stats. Identities = 72/382 (18%), Positives = 151/382 (39%), Gaps = 33/382 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWHDGDD 57 L Y++QL K +++ +L ++++ P YR + + I + Sbjct: 85 GCQLQHMSYKEQLNFKRQKVKDALLRLGGIDVEVEEVLGMENPYRYRNKVQLPIGKEKGK 144 Query: 58 LYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATI-------RLEPLLRAKLFQIDYL 110 + + ++ + + + ++ + I E + L I Sbjct: 145 VNIGFYAPRSHNIIDLKSCFIQDEKADKIIKILKEWIEKFNVSIYDEKEHKGNLRHIMVR 204 Query: 111 TS-QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD---- 165 T+ ++ Q ++ L+ E +L + L IQ + + KT + L ++ Sbjct: 205 TAFRTGQIMIVLVTKDKKLPHKEELINKLTEDLEGVVSIIQNMN-SQKTNVVLGKESIVL 263 Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFS 224 + +++ + SF Q N + L +++ + YCG G S Sbjct: 264 WGKDKIIDYIGNFKFAITPLSFFQVNPIQTEVLYNKALEYADLKGDEVVFDAYCGTGTIS 323 Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284 L L++ +V VEI ++E+A+ N N+V+NV + S++ + + Sbjct: 324 LFLSQKAKKVYGVEIVNEAIESAKLNARENNVDNVDFIVGESEQI------------IPE 371 Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST-THTI 341 + + + VDPPR G + + + + A I+Y+SC+P +L RDL +L + Sbjct: 372 LIEKGIKADVVVVDPPRKGCEKSLLEAMAKMAPEKIVYVSCDPATLARDLGVLEELGYKT 431 Query: 342 ERLALFDQFPYTRHMECGVLLV 363 ++ D F T H+E +L+ Sbjct: 432 MKVQPVDMFSNTYHVETIILMT 453 >gi|296451840|ref|ZP_06893559.1| 23S rRNA (uracil-5-)-methyltransferase [Clostridium difficile NAP08] gi|296879764|ref|ZP_06903738.1| 23S rRNA (uracil-5-)-methyltransferase [Clostridium difficile NAP07] gi|296259319|gb|EFH06195.1| 23S rRNA (uracil-5-)-methyltransferase [Clostridium difficile NAP08] gi|296429235|gb|EFH15108.1| 23S rRNA (uracil-5-)-methyltransferase [Clostridium difficile NAP07] Length = 452 Score = 286 bits (733), Expect = 3e-75, Method: Composition-based stats. Identities = 79/388 (20%), Positives = 152/388 (39%), Gaps = 41/388 (10%) Query: 2 SGTLLID-QYEQQLAEKVDRLRQMMLAFQVPNL-----QIFRSEPIHYRMRAEFHIWHDG 55 G + D Y +QL K + ++Q++ I P YR +A+F I + Sbjct: 80 GGCQIQDLDYNKQLEMKTNEVKQVLSRIGKLEDVEVHDTIGMDNPYRYRNKAQFPIQKNN 139 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGSLL-----------INALMIEMMATIRLEPLLRAKL 104 + ++T + + + + + I A + + L+R + Sbjct: 140 GVPIIGFYKKKTHDVISTEKCVIQHEINDKIVKIIKTYIRAYKVSIYDEKTHTGLIRHLV 199 Query: 105 FQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR 164 +I + T + +V +E A L++ + K + + + + T L + Sbjct: 200 TKIGFTTKEVMVVLVANGNKLPY---LKELASVLKENIPGFKTLVVNVNQKD-TNAILGK 255 Query: 165 D----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCG 219 + Y D ++ L++ SF Q N + + L A + ++YCG Sbjct: 256 ENIVIYGDGKINDYIGDLVFEISPLSFFQVNPVQTKVLYDKALEYADLNETDTVFDIYCG 315 Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279 G SL LA+ +V +EI +++ A+ N N+++N + ++E M RE Sbjct: 316 IGTISLFLAQKAKKVYGIEIIDDAIKDAKINAKLNNMHNAEFYVGKAEEIVPKMYRE--- 372 Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILS- 336 + VDPPR G D+ + + + I+Y+SCNP +L RDL L+ Sbjct: 373 ---------GKTANVVVVDPPRKGCDEKVLETIVSMSPERIVYVSCNPSTLARDLDYLNV 423 Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVR 364 D FP++ H+E +++ Sbjct: 424 HGFKCVEAQPVDMFPHSTHVETVAKIIK 451 >gi|253729672|ref|ZP_04863837.1| TrmA family RNA methyltransferase [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253726613|gb|EES95342.1| TrmA family RNA methyltransferase [Staphylococcus aureus subsp. aureus USA300_TCH959] Length = 453 Score = 286 bits (732), Expect = 3e-75, Method: Composition-based stats. Identities = 74/388 (19%), Positives = 150/388 (38%), Gaps = 40/388 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLA---FQVPNL--QIFRSEPIHYRMRAEFHIWH-DG 55 L YE QL K +++ + F + + ++P YR +++ + + Sbjct: 82 GCQLQHLSYEAQLEMKKEQVINLFQRKAHFDNSKINDTVGMTDPWRYRNKSQIPVGKNEQ 141 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKL 104 +++ + Q++ + + ++ + ++ L + + + L+R + Sbjct: 142 NEVIMGFYRQRSHDIIDMESCLIQDSQHQEVMNEVKSILKDLNVSIYQEQLKKGLMRHLV 201 Query: 105 FQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQ----LIGRANKTKI 160 + Y T + VT +A E + + + K I + ++ Sbjct: 202 VRTGYHTDEMMIIFVTNGKKWPQKNAVVEKILDAFPNVTSIKQNINDSHSNVIMGRQSIT 261 Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCG 219 +D + ++LT + ++ + SF Q N+ + + + ++ L+ YCG Sbjct: 262 LYGKDTIIDQLTDS----TFKISDQSFYQINSEQTEKLYNKAIQYAQLTGNEVVLDTYCG 317 Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279 G L +A H V VE+ ++E A+ N N NN V ++E + Sbjct: 318 IGTIGLYMAPHAKHVYGVEVVPSAIEDAQQNATINQCNNTTFVCGKAEEVILQWKA---- 373 Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST 337 + + VDPPR G D+ + + I+YISCNP + RD +L+ Sbjct: 374 --------QGIKPDVVMVDPPRKGCDETFIQTLLTLEPKRIVYISCNPATQQRDALLLAE 425 Query: 338 THTIERLALFDQFPYTRHMECGVLLVRK 365 + +E + D FP T H+E L K Sbjct: 426 KYQLEEVTPVDMFPQTTHVETVALFNLK 453 >gi|289578813|ref|YP_003477440.1| RNA methyltransferase, TrmA family [Thermoanaerobacter italicus Ab9] gi|289528526|gb|ADD02878.1| RNA methyltransferase, TrmA family [Thermoanaerobacter italicus Ab9] Length = 453 Score = 286 bits (732), Expect = 4e-75, Method: Composition-based stats. Identities = 74/387 (19%), Positives = 144/387 (37%), Gaps = 39/387 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLA----FQVPNLQIFRSEPIHYRMRAEFHIWHDGDD 57 + YE QL K +++ + + + I EP YR +A+F + + Sbjct: 82 GCSFQHLSYEGQLKYKTQKVKDNLERIGKVYTKVHEIIGMKEPQRYRNKAQFPVGMLDGE 141 Query: 58 LYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLFQ 106 + + ++ + I+ M + I + + + L+R + + Sbjct: 142 VVTGFYAPRSHDIAPIESCMIQNETSDNIARTVRNWIKKYNVSVYDEKAGKGLIRHIVTR 201 Query: 107 IDYLTSQSDQAIVTLIYHRL----LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162 + + T + +V H L DA ++ L+ + + + Sbjct: 202 VAFKTGEVMVILVVNGKHIPYKEQLIDALKKEIKGLKSVVLNINTKRTNVIMGEDNITIY 261 Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNG 221 D + + + + + + SF Q N + VL A ++++YCG G Sbjct: 262 GSDNIIDYI----KDIKFEISPLSFFQVNPVQTEVLYGKVLEYADLKGNETVIDVYCGIG 317 Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281 SL A+ V +E +VE A+ N N + NV+ + +++ Sbjct: 318 TISLFAAQKAFFVYGIEAVHQAVEDAKRNAYINGIKNVEFISGQAEKV------------ 365 Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STT 338 + ++ + + +DPPR G D + + I+Y+SCNP +L RDL L Sbjct: 366 MPELVDKGVKADVVIIDPPRKGCDIPVLEAIVNMNPQKIVYVSCNPSTLARDLRYLDDKG 425 Query: 339 HTIERLALFDQFPYTRHMECGVLLVRK 365 + + D FPYT H+E L+ K Sbjct: 426 YKTMEVQPVDMFPYTHHVESVCLITNK 452 >gi|291521671|emb|CBK79964.1| 23S rRNA m(5)U-1939 methyltransferase [Coprococcus catus GD/7] Length = 458 Score = 286 bits (732), Expect = 4e-75, Method: Composition-based stats. Identities = 76/390 (19%), Positives = 146/390 (37%), Gaps = 41/390 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFHIW-HDG 55 + YE+QLA K +++R ++ I P +YR +A+F + Sbjct: 84 GCQIQHLSYERQLAFKENKVRNLLSRVGHIEDYVMHPIIGMEHPYYYRNKAQFPVGLGKD 143 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGSLLINAL-----------MIEMMATIRLEPLLRAKL 104 + + T + + + + L I + L+R L Sbjct: 144 GQIVTGFYAGHTHVIVDSAHCCIQAPVNEQLLVIVKKWMTDHDIAPYDETTHKGLVRHIL 203 Query: 105 FQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQ----LIGRANKTKI 160 ++ + T + ++ ++ E + + + + I + +K Sbjct: 204 TRVGFKTKEIMVCLIINGKKLPHSESLVEALREIPG-MTSISFNINQDKTNVILGSKVVT 262 Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCG 219 +DY+ + + + Y+ SF Q N + L D+ +LYCG Sbjct: 263 LWGQDYITDYIG----DVRYQISPLSFYQVNPVQTEKLYGAALKFANPGPNDVIWDLYCG 318 Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279 G SL +A+ +V VEI +++ A+ N A N ++N + ++E Sbjct: 319 IGTISLFMAKKAKQVYGVEIVPQAIDDAKRNAAINDIHNAEFYVGKAEEVLPQTYER--- 375 Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILST 337 I VDPPR G D++ + + ++Y+SC+P +L RDL L Sbjct: 376 --------EHIHADIIVVDPPRKGCDESLLACITQMQPKRVVYVSCDPATLARDLKYLEE 427 Query: 338 T-HTIERLALFDQFPYTRHMECGVLLVRKP 366 + ++ + D F ++ H+E VLL RK Sbjct: 428 RDYKVKEVQCVDMFGHSVHVETVVLLQRKN 457 >gi|239638046|ref|ZP_04679005.1| 23S rRNA-methyltransferase RumA [Staphylococcus warneri L37603] gi|239596329|gb|EEQ78867.1| 23S rRNA-methyltransferase RumA [Staphylococcus warneri L37603] Length = 453 Score = 286 bits (732), Expect = 4e-75, Method: Composition-based stats. Identities = 79/387 (20%), Positives = 146/387 (37%), Gaps = 38/387 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLA---FQVPNLQ--IFRSEPIHYRMRAEFHIW-HDG 55 L Y+ QL K +++ + F ++ + EP YR +++ + Sbjct: 82 GCQLQHMSYQAQLNMKKEQVVNLFHRKSNFTNTVIKDTVGMEEPWRYRNKSQIPVGLSKN 141 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKL 104 + Q++ + + +D + LI+ L I + + LLR + Sbjct: 142 QLPIMGFYRQRSHDIIDMDSCLIQDQQHQQVMNDVKQLISNLNISVYNEKTKKGLLRHLV 201 Query: 105 FQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR 164 + + T +Q ++ L+ + + L Q I A+ I + Sbjct: 202 MRTGHYT---NQLMIILVTNGKAFKQAQVMVDALVRKYPNVTSIKQNINDAHSNVIMGHQ 258 Query: 165 D---YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGN 220 Y +E + + + + SF Q N+ + + L + + +L+ YCG Sbjct: 259 SITLYGEEEIKDQLNEVTFNISDQSFYQINSHQTEKLYQQALDYAQLTGNEIVLDTYCGI 318 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G L +A + V VE+ +++ A+ N N N V ++E + E Sbjct: 319 GTIGLYMAENAKHVYGVEVVPSAIKDAKQNATINQFENTTFVCGKAEEVILEWKSE---- 374 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTT 338 R + VDPPR G D+ + + I+YISCNP + RD ILS Sbjct: 375 --------GIRPDVVMVDPPRKGCDETFLETILELNPKRIVYISCNPSTQQRDAHILSRQ 426 Query: 339 HTIERLALFDQFPYTRHMECGVLLVRK 365 + ++ + D FP T H+E + RK Sbjct: 427 YELKEITPVDMFPQTTHIETVAIFERK 453 >gi|258422974|ref|ZP_05685873.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus A9635] gi|257846761|gb|EEV70776.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus A9635] Length = 453 Score = 286 bits (732), Expect = 4e-75, Method: Composition-based stats. Identities = 74/388 (19%), Positives = 151/388 (38%), Gaps = 40/388 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLA---FQVPNL--QIFRSEPIHYRMRAEFHIW-HDG 55 L YE QL K +++ + F + + ++P YR +++ + ++ Sbjct: 82 GCQLQHLSYEAQLEMKKEQVINLFQRKAHFDNSKINDTVGMTDPWRYRNKSQIPVGENEQ 141 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKL 104 +++ + Q++ + + ++ + ++ L + + + L+R + Sbjct: 142 NEVIMGFYRQRSHDIIDMESCLIQDSQHQEVMNEVKSILKDLNVSIYQEQLKKGLMRHLV 201 Query: 105 FQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQ----LIGRANKTKI 160 + Y T + VT +A E + + + K I + ++ Sbjct: 202 VRTGYHTDEMMIIFVTNGKKWPQKNAVVEKILDAFPNVTSIKQNINDSHSNVIMGRQSIT 261 Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCG 219 +D + ++LT + ++ + SF Q N+ + + + ++ L+ YCG Sbjct: 262 LYGKDTIIDQLTDS----TFKISDQSFYQINSEQTEKLYNKAIEYAQLTGNEVVLDTYCG 317 Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279 G L +A H V VE+ ++E A+ N N NN V ++E + Sbjct: 318 IGTIGLYMAPHAKHVYGVEVVPSAIEDAQQNATINQCNNTTFVCGKAEEVILQWKA---- 373 Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST 337 + + VDPPR G D+ + + I+YISCNP + RD +L+ Sbjct: 374 --------QGIKPDVVMVDPPRKGCDETFIQTLLTLEPKRIVYISCNPATQQRDALLLAE 425 Query: 338 THTIERLALFDQFPYTRHMECGVLLVRK 365 + +E + D FP T H+E L K Sbjct: 426 KYQLEEVTPVDMFPQTTHVETVALFNLK 453 >gi|253576638|ref|ZP_04853966.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Paenibacillus sp. oral taxon 786 str. D14] gi|251844052|gb|EES72072.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Paenibacillus sp. oral taxon 786 str. D14] Length = 483 Score = 286 bits (732), Expect = 4e-75, Method: Composition-based stats. Identities = 81/386 (20%), Positives = 142/386 (36%), Gaps = 46/386 (11%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56 + YE QLA K + +R+ + + P YR +A+ + + Sbjct: 110 GCQIQHLSYEGQLAGKEEIIREAFARYAGLQDVRLKPMLGMDHPWGYRNKAQLQLGMSQE 169 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINA-----------LMIEMMATIRLEPLLRAKLF 105 + ++ + + + I +N L I + + L+R + Sbjct: 170 GMIAGLYAADSHKLIDITGCPIQHPKVNEVVDKTRDVLQRLGIPVYKEKSNQGLVRTIVV 229 Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIG-------RANKT 158 ++ + + Q +VT + + LR A+ + N+T Sbjct: 230 RVGFQSGQLQVTLVTANDKLPRRE---QLVKELRLAMPELTSIAMNVNPKNTSLVFGNRT 286 Query: 159 KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWV-LAATKGIQGDLLELY 217 +I D + E L L + +F Q N V + E V AA + +++ Y Sbjct: 287 EILWGADSIQESLG----DLEFTLSPRAFFQLNPLQTVKLYESVRAAAGLTGKETVVDAY 342 Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277 CG G L LA + V +E +VE A+ N A N +N + ++E + Sbjct: 343 CGTGTIGLWLAPYAKEVRGIESIPEAVEDAKANAARNGRDNAQFYTGYAEELLPRWVK-- 400 Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLS-I 334 + I DPPR+GLD + V +Y+SCNP +L +D + Sbjct: 401 ----------SGFAPDVIVADPPRTGLDPRFLEAVLKTKPKRFVYVSCNPSTLAKDCKAL 450 Query: 335 LSTTHTIERLALFDQFPYTRHMECGV 360 L + +E + D FP T H+EC V Sbjct: 451 LDGGYALEWVQPVDMFPQTSHVECVV 476 >gi|296331894|ref|ZP_06874359.1| putative RNA methyltransferase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305673506|ref|YP_003865178.1| putative RNA methyltransferase [Bacillus subtilis subsp. spizizenii str. W23] gi|296150972|gb|EFG91856.1| putative RNA methyltransferase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305411750|gb|ADM36869.1| putative RNA methyltransferase [Bacillus subtilis subsp. spizizenii str. W23] Length = 466 Score = 286 bits (731), Expect = 5e-75, Method: Composition-based stats. Identities = 81/395 (20%), Positives = 155/395 (39%), Gaps = 48/395 (12%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMML---AFQVPNLQI----FRSEPIHYRMRAEFHIWH- 53 L Y QQL EK D + Q + F++ N++I P +YR +++F I Sbjct: 90 GCQLQHLAYSQQLREKRDIVIQSLERHTKFKIENMEIKETIGMDNPWNYRNKSQFQIGRS 149 Query: 54 DGDDLYHIMFDQQTKERMRIDYFMPGSLLIN-----------ALMIEMMATIRLEPLLRA 102 + ++ + + + I + N + + + + +R Sbjct: 150 QSGSIIAGLYGLDSHDIVPIKDCVVQHPATNKTTGIVRRILEDFNVSVYNERKRKGDVRT 209 Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIG-------RA 155 + ++ + ++ + V L+ + E ++ L K IQ + Sbjct: 210 IVTRVGF---ETGEVQVVLVTAKETLPHKEEIVKAIQKRLPEVKSIIQNVNGAKTSVIFG 266 Query: 156 NKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLL 214 KTK + + E L + + +F Q N V + + V AA + ++ Sbjct: 267 EKTKPLAGKTVIQEVLG----DVSFELSARAFFQLNPEQTVKLYDEVKKAAQLTGKERVV 322 Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274 + YCG G + +A V +++ K S++ A+ N + + N V +++ + Sbjct: 323 DAYCGVGTIGMWVADGAKEVRGMDVIKESIDDAKKNAKKHGMTNATYVTGTAEHWLPKWT 382 Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDL 332 +E +R + VDPPR+G D + + +Y+SCNP +L +DL Sbjct: 383 KE------------GFRPDVVIVDPPRTGCDSTFLDTIIKVKPKRFVYVSCNPSTLAKDL 430 Query: 333 SILSTTHTIERLALFDQFPYTRHMECGVLLVRKPS 367 LS + ++ + D FP T H+E LV KPS Sbjct: 431 QALSKDYRVDYIQPVDMFPQTAHVEAVAKLVLKPS 465 >gi|256847809|ref|ZP_05553254.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus coleohominis 101-4-CHN] gi|256715498|gb|EEU30474.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus coleohominis 101-4-CHN] Length = 458 Score = 286 bits (731), Expect = 5e-75, Method: Composition-based stats. Identities = 76/383 (19%), Positives = 157/383 (40%), Gaps = 38/383 (9%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWHDGDDLYH 60 L +YE QL K ++++++ + N+++ +P HYR +A+ + L Sbjct: 88 LGHLKYEAQLKFKQHQIQELLAKAHLDNIEVLPTLGMEKPYHYRNKAQVPVKMIRGQLET 147 Query: 61 IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKLFQIDY 109 + + + + I+ F I+ ++ + +R + ++R + + Y Sbjct: 148 GFYKRGSHTLVPIEDFYIQDPAIDQAIVVVRDLLRKYHVTPYNEQTGKGIIRTVMVRRGY 207 Query: 110 LTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD---Y 166 + + +VT H + ++ + + K +Q I ++ D+D + Sbjct: 208 YSHEVMVVLVTNTKHLPMK---QQIVDGIVAGVPEVKSIVQNINDRRTNRLLGDQDVTLW 264 Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNFSL 225 + + + + SF Q N + + + A +++ YCG G SL Sbjct: 265 GADEIHDQLLGIDFAISPLSFYQVNPQQTERLYQAAIDNAELDGSQTVIDAYCGIGTISL 324 Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285 +A+H +V VEI ++ A+ N N + N + V ++E + E Sbjct: 325 AVAKHAKQVYGVEIVPAAIADAKKNAQNNEITNAEFVVGKAEEQFAKWQAE--------- 375 Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST-THTIE 342 + + VDPPR GL ++ + A ++Y+SCNP +L RD+ + + + Sbjct: 376 ---GLKPDVVIVDPPRKGLAESLIEATGKMAPKKVIYVSCNPATLVRDIQRFAEQGYHVT 432 Query: 343 R-LALFDQFPYTRHMECGVLLVR 364 + + DQFP T H+E +L R Sbjct: 433 KPIQPVDQFPQTTHVESVTVLER 455 >gi|82751550|ref|YP_417291.1| RNA methyltransferase [Staphylococcus aureus RF122] gi|82657081|emb|CAI81518.1| RNA methyltransferase [Staphylococcus aureus RF122] Length = 453 Score = 286 bits (731), Expect = 5e-75, Method: Composition-based stats. Identities = 74/388 (19%), Positives = 150/388 (38%), Gaps = 40/388 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLA---FQVPNL--QIFRSEPIHYRMRAEFHIWH-DG 55 L YE QL K +++ + F + + ++P YR +++ + + Sbjct: 82 GCQLQHLSYESQLEMKKEQVINLFQRKAQFDNSKINDTVGMTDPWRYRNKSQIPVGKNEQ 141 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKL 104 +++ + Q++ + + ++ + ++ L + + + L+R + Sbjct: 142 NEVIMGFYRQRSHDIIDMESCLIQDSQHQEVMNEVKSILKDLNVSIYQEQLKKGLMRHLV 201 Query: 105 FQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQ----LIGRANKTKI 160 + Y T + VT +A E + + + K I + ++ Sbjct: 202 VRTGYHTDEMMIIFVTNGKKWSQKNAVVEKILDAFPNVTSIKQNINDSHSNVIMGRQSIT 261 Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCG 219 +D + ++LT + ++ + SF Q N+ + + + ++ L+ YCG Sbjct: 262 LYGKDTIIDQLTDS----TFKISDQSFYQINSEQTEKLYNKAIEYAQLTGNEVVLDTYCG 317 Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279 G L +A H V VE+ ++E A+ N N NN V ++E + Sbjct: 318 IGTIGLYMAPHAKHVYGVEVVPSAIEDAQKNATINQCNNTTFVCGKAEEVILQWKA---- 373 Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST 337 + + VDPPR G D+ + + I+YISCNP + RD +L+ Sbjct: 374 --------QGIKPDVVMVDPPRKGCDETFIQTLLTLEPKRIVYISCNPATQQRDALLLAE 425 Query: 338 THTIERLALFDQFPYTRHMECGVLLVRK 365 + +E + D FP T H+E L K Sbjct: 426 KYQLEEVTPVDMFPQTTHVETVALFNLK 453 >gi|194466906|ref|ZP_03072893.1| RNA methyltransferase, TrmA family [Lactobacillus reuteri 100-23] gi|194453942|gb|EDX42839.1| RNA methyltransferase, TrmA family [Lactobacillus reuteri 100-23] Length = 456 Score = 286 bits (731), Expect = 5e-75, Method: Composition-based stats. Identities = 76/384 (19%), Positives = 154/384 (40%), Gaps = 40/384 (10%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWHDGDDLYH 60 L +YE QL K ++ +++ + +++ +P HYR +A+ + L Sbjct: 88 LGHLKYEAQLKFKQHQIAELLAKAHLDEIEVLPTTGMKKPYHYRNKAQVPVKMVRGQLET 147 Query: 61 IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKLFQIDY 109 + + + + I+ F I+ ++ + +R + ++R + + Y Sbjct: 148 GFYKRGSHNLVPIEDFYIQDPEIDKAIVVVRDLLRQYHITPYDEQTGKGVIRTVMVRRGY 207 Query: 110 LTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD 165 + + +VT L + + D ++ + + +K K D Sbjct: 208 YSHEMMVVLVTNTKRLPMEKQIVDGIVAGVPEVKSIVQNINDKRTNRLLGDKNKTLWGAD 267 Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNFS 224 + ++L + + SF Q N + + + A +++ YCG G S Sbjct: 268 EIHDQLL----GIDFAISPLSFYQVNPQQTERLYQTAIDNAGLDGNQTVIDAYCGIGTIS 323 Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284 L +A+H +V VEI ++E A++N N + N K V ++E + E Sbjct: 324 LAVAKHAKQVYGVEIVPAAIEDAKHNAKRNGIKNAKFVVGKAEEQFAKWQAE-------- 375 Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILS-TTHTI 341 + + VDPPR GL ++ + ++Y+SCNP +L RD+ + + + Sbjct: 376 ----GLKPDVVIVDPPRKGLAESLIEATGKMDPKKVIYVSCNPATLVRDIKRFADQGYHV 431 Query: 342 ER-LALFDQFPYTRHMECGVLLVR 364 + + DQFP T H+E +L R Sbjct: 432 TKPIQPVDQFPQTTHVESVTVLER 455 >gi|56962873|ref|YP_174600.1| S-adenosylmethionine (SAM)-dependent methyltransferase [Bacillus clausii KSM-K16] gi|56909112|dbj|BAD63639.1| S-adenosylmethionine (SAM)-dependent methyltransferase [Bacillus clausii KSM-K16] Length = 458 Score = 286 bits (731), Expect = 5e-75, Method: Composition-based stats. Identities = 78/383 (20%), Positives = 134/383 (34%), Gaps = 34/383 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56 + Y QLA K +++ +M I +P YR +++ + Sbjct: 86 GCQIQHMDYSAQLAYKQKQVKDVMGRVAKLPDVPVPPVIGMDDPWRYRNKSQVPVAFQKG 145 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSL-------LINALMIEMMATIRLEPLLRAKLFQIDY 109 DL + +++ + +D + + L E+ E + L I Sbjct: 146 DLVAGFYAKRSHSIVDMDQCIIQHKENDIVVQTVKQLAKELRIPAYQEQSHQGVLRHIVA 205 Query: 110 LTSQS-DQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD--- 165 ++ Q +V L+ +R + +Q I T + + Sbjct: 206 RYGKTTGQVMVVLVTKEKKLPHKEAFISGIRKHVPGVVSIVQNINNKR-TNVIFGQQTDV 264 Query: 166 -YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNF 223 + + L ++ + SF Q N + L + +++ YCG G Sbjct: 265 LWGEHYLYDEINSIRFAISARSFYQVNPEQTNRLYSKALEYADLTGNEIVIDAYCGIGTI 324 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 SL LA+ V VEI +++ A+ N N + N ++E Sbjct: 325 SLFLAKKARHVYGVEIVPEAIKDAKRNAKLNQITNATFAVGEAEEVIPRWHD-------- 376 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILS-TTHT 340 I VDPPR G D+A + + I+Y+SCNP +L RDL IL + Sbjct: 377 ----QGIDADVIVVDPPRKGCDEALLRTMMEMKPKRIVYVSCNPGTLARDLRILEDGGYK 432 Query: 341 IERLALFDQFPYTRHMECGVLLV 363 E + D FP T H+E LV Sbjct: 433 TEEVTPVDMFPQTTHVEAVARLV 455 >gi|253316906|ref|ZP_04840119.1| RNA methyltransferase-like protein [Staphylococcus aureus subsp. aureus str. CF-Marseille] Length = 453 Score = 285 bits (730), Expect = 6e-75, Method: Composition-based stats. Identities = 75/388 (19%), Positives = 150/388 (38%), Gaps = 40/388 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLA---FQVPNL--QIFRSEPIHYRMRAEFHIWH-DG 55 L YE QL K +++ + F + + ++P YR +++ + + Sbjct: 82 GCQLQHLSYEAQLEMKKEQVINLFQRKAHFDNSKINDTVGMTDPWRYRNKSQIPVGKNEQ 141 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKL 104 +++ + Q++ + + ++ + ++ L + + + L+R + Sbjct: 142 NEVIMGFYRQRSHDIIDMESCLIQDSQHQEVMNEVKSILKDLNVSIYQEQLKKGLMRHLV 201 Query: 105 FQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQ----LIGRANKTKI 160 + Y T + VT +A E + + + K I + ++ Sbjct: 202 VRTGYHTDEMMIIFVTNGKKWPQKNAVVEKILDAFPNVTSIKQNINDSHSNVIMGRQSIT 261 Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCG 219 +D + ++LT + ++ + SF Q N+ + + + ++ L+ YCG Sbjct: 262 LYGKDTIIDQLTDS----TFKISDQSFYQINSEQTEKLYNKAIEYAQLTGNEVVLDTYCG 317 Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279 G L +A H V VE+ S+E A+ N N NN V ++E + Sbjct: 318 IGTIGLYMAPHAKHVYGVEVVPSSIEDAQQNATINQCNNTTFVCGKAEEVILQWKA---- 373 Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST 337 + + VDPPR G D+ + + I+YISCNP + RD +L+ Sbjct: 374 --------QGIKSDVVMVDPPRKGCDETFIQTLLTLEPKRIVYISCNPATQQRDALLLAE 425 Query: 338 THTIERLALFDQFPYTRHMECGVLLVRK 365 + +E + D FP T H+E L K Sbjct: 426 KYQLEEVTPVDMFPQTTHVETVALFNLK 453 >gi|302672182|ref|YP_003832142.1| 23S rRNA methyltransferase [Butyrivibrio proteoclasticus B316] gi|302396655|gb|ADL35560.1| 23S rRNA methyltransferase [Butyrivibrio proteoclasticus B316] Length = 496 Score = 285 bits (730), Expect = 6e-75, Method: Composition-based stats. Identities = 86/418 (20%), Positives = 155/418 (37%), Gaps = 56/418 (13%) Query: 2 SGTLL-IDQYEQQLAEKVDRLRQ---MMLAFQ------VPNLQIFRSEPIHYRMRAEFHI 51 G YE++L K ++R + F + I EP YR +A+F I Sbjct: 80 GGCQTQNMSYEKELEFKQRKVRNNIVRLGGFDESFVDSIMEPIIGMDEPWRYRNKAQFPI 139 Query: 52 WHDG-DDLYHIMFDQQTKERMRIDYFMPG--------SLLINAL---MIEMMATIRLEPL 99 D + + +T + + + G S++I+ + IE + L Sbjct: 140 GKDKNGRIIAGFYAGRTHSIIPVTDCLIGTAENKDILSVIISHMEKNNIEPYDETSGKGL 199 Query: 100 LRAKLFQIDYLTSQSDQAIVTLIYHRLLDD--------------AWRECAIRLRDALHAR 145 +R L + + + Q +V + + L L Sbjct: 200 MRHVLIRKGFTSGQIMVCLVLNYKGISKNKKFAGINADGENTAIEYISGQKELVTRLSQI 259 Query: 146 K--YQIQLIGRANKTKICLDRD----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHML 199 K I + +KT + + + + ++ ++ L + SF Q N + Sbjct: 260 KGMTSISVSINTDKTNVIMGTEIHTIWGNDTISDTLCGLEFDISPLSFYQVNPVQCEKLY 319 Query: 200 EWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVN 257 + G+ G+ + +LYCG G +L +A+ V VEI ++E A+ N N + Sbjct: 320 GQAIE-YAGLTGEETVWDLYCGIGTITLSMAKKAGHVYGVEIIPDAIEDAKKNALRNGLT 378 Query: 258 NVKIVRMSSKEFTQAMRREREFNRLKDIDIH--------SYRFKTIFVDPPRSGLDDATV 309 N ++E + + I VDPPR G D A + Sbjct: 379 NADFFCGKAEEVLPDFYANGRLEEKDKHALQSEYNISESALHPDVIVVDPPRKGCDQACL 438 Query: 310 G-MVQAYP-HILYISCNPDSLCRDLSILS-TTHTIERLALFDQFPYTRHMECGVLLVR 364 M++ P I+Y+SC+ +L RDL IL+ + ++ + D F +T H+E VLL + Sbjct: 439 DTMLKMSPDRIVYVSCDSATLARDLRILADGGYELKAIRPCDMFGHTVHVETVVLLTK 496 >gi|154685168|ref|YP_001420329.1| YefA [Bacillus amyloliquefaciens FZB42] gi|154351019|gb|ABS73098.1| YefA [Bacillus amyloliquefaciens FZB42] Length = 464 Score = 285 bits (730), Expect = 6e-75, Method: Composition-based stats. Identities = 71/391 (18%), Positives = 146/391 (37%), Gaps = 42/391 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-------VPNLQIFRSEPIHYRMRAEFHIWHD 54 L YE QL K +++ ++ + + + +P +YR +A+ + Sbjct: 85 GCQLQHMTYEGQLLFKQKQVKDVLERIGKLNLSKVIVHPTLGMEDPWNYRNKAQVPVGER 144 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEM-----------MATIRLEPLLRAK 103 L + Q++ + + + + + + + R + LR Sbjct: 145 EGGLVAGFYQQRSHDIIDMSACLIQQSKNDEAVQAVKDICTSYGVKAYNEERHKGWLRHI 204 Query: 104 LFQIDYLTSQSDQAIVTL---IYHR-LLDDAWRECAIRLRDALHARKYQIQLIGRANKTK 159 + + +T + +T H+ + + ++ + + N+T Sbjct: 205 MVRYGVVTGEMMIVFITRTSDFPHKAKIIEDITAQFPHVKSIVQNINPNKTNVIFGNETN 264 Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYC 218 + +Y+ + + + + SF Q N + + L A + +++ YC Sbjct: 265 VIWGEEYIYDLIG----DVKFAISARSFYQVNPEQTKVLYDKALEYAELQGEETVIDAYC 320 Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278 G G SL LA+ +V VEI ++E A+ N N + N + ++ +E Sbjct: 321 GIGTISLFLAKQAKKVYGVEIVPEAIEDAKRNAELNGITNAEFAVGEAETVIPKWYKE-- 378 Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILS 336 T+ VDPPR G D+A + + ++Y+SCNP +L RDL +L Sbjct: 379 ----------GITADTLVVDPPRKGCDEALLRTIIDMKPKRVVYVSCNPGTLARDLRMLE 428 Query: 337 -TTHTIERLALFDQFPYTRHMECGVLLVRKP 366 + + D FP+T H+E ++ K Sbjct: 429 DGGYQTLEVQPVDMFPHTNHVEVVSQMILKN 459 >gi|240146924|ref|ZP_04745525.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Roseburia intestinalis L1-82] gi|257200907|gb|EEU99191.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Roseburia intestinalis L1-82] Length = 565 Score = 285 bits (730), Expect = 6e-75, Method: Composition-based stats. Identities = 87/398 (21%), Positives = 154/398 (38%), Gaps = 41/398 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ--VPNLQ-------IFRSEPIHYRMRAEFHIW 52 + YE+QL K +++R ++ P L + EP YR +A+F I Sbjct: 79 GCQIQALDYEKQLEFKQNKVRGNLIRIGGFAPELIDRIMLPVVGMKEPYRYRNKAQFPIG 138 Query: 53 HDGD-DLYHIMFDQQTKERMRIDYFMPGSL----LINA-------LMIEMMATIRLEPLL 100 D D + + +T + ++ G ++N + + L+ Sbjct: 139 ADKDGNPVAGFYAARTHSIIPVNDCKLGVEENQIILNEVLSYMKEYHVASYDENTGKGLV 198 Query: 101 RAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRL---RDALHARKYQIQLIGRANK 157 R L + + T + ++ + + + + + + + + Sbjct: 199 RHVLIRYGFSTKELMVCVIINGSSLPKVEKLIDRLTAIEGMKSISINQNTKKTNVILGDV 258 Query: 158 TKICLDRDYVDERLTVAGR--------TLIYRQIENSFTQPNAGINVHMLEWVLA-ATKG 208 TK Y+ + + + + Y SF Q N + L A Sbjct: 259 TKCIWGDPYITDMIHLCDTKDFSLTDTAVAYHISPQSFYQVNPVQTEKLYSLALDYAGLT 318 Query: 209 IQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268 + + +LYCG G SL LA+ +V VEI ++E A+ N A N +NN + ++E Sbjct: 319 GKETVWDLYCGIGTISLFLAQKAGKVYGVEIIPQAIEDAKNNAALNGINNAEFFVGKAEE 378 Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPD 326 A + + KD D I VDPPR G D + M++ P I+Y+SC+ Sbjct: 379 VLPAF-----YEKKKDTDADMLHPDVIVVDPPRKGCDGVCLETMLKMQPERIVYVSCDSA 433 Query: 327 SLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLV 363 +L RDL +L + + ++ DQF T H+E VLL Sbjct: 434 TLARDLKVLCEGGYELCKVRAVDQFGNTTHVETVVLLS 471 >gi|315641084|ref|ZP_07896163.1| 23S rRNA (uracil-5-)-methyltransferase [Enterococcus italicus DSM 15952] gi|315483092|gb|EFU73609.1| 23S rRNA (uracil-5-)-methyltransferase [Enterococcus italicus DSM 15952] Length = 465 Score = 285 bits (730), Expect = 6e-75, Method: Composition-based stats. Identities = 77/384 (20%), Positives = 152/384 (39%), Gaps = 40/384 (10%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGDDLY 59 L YE+QL+ K +++ ++ + I +P HYR +A+ + L Sbjct: 95 LSHLTYEKQLSFKQEQVTNVLKKIAHMPDVTVSPTIAMEQPSHYRNKAQIPVQKINGQLT 154 Query: 60 HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKLFQID 108 + + + + ++ F I+ + E+ ++ E LR + + Sbjct: 155 TGFYRKHSHTLIPLEDFYIQDPAIDEAISEIRDILQRFGVKAYNEEAHEGFLRHIIIRRG 214 Query: 109 YLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR 164 + + Q +VT + + +E + + + + ++ + Sbjct: 215 HYSHQMMVILVTRKPKFFQADKIAEVIKEMLPEVVSIIQNVNEEKTNVIMGPTNRVLYGK 274 Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNF 223 Y++++L +R SF Q N + + + + + D +++ Y G G Sbjct: 275 SYIEDQLLGK----TFRISAQSFYQVNTEQAEKLYQVAMDFAQLSKNDTVVDAYSGIGTI 330 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 L LA D V +EI +V+ A+ N A N + N + +++ RE Sbjct: 331 GLSLADKVDHVYGMEIVAEAVKDAQTNAAINGITNATYLEGKAEKIMHQWAREE------ 384 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSIL-STTHT 340 + +FVDPPR GLD + + ++YISCNP ++ RD+ + + Sbjct: 385 ------VQPTVVFVDPPRKGLDASFIDATCEMQPERVVYISCNPATMARDVKLFAEKGYQ 438 Query: 341 IERLALFDQFPYTRHMECGVLLVR 364 +E++ D FP T H+EC LL R Sbjct: 439 LEKVQPVDLFPQTVHVECVGLLTR 462 >gi|298695236|gb|ADI98458.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus ED133] Length = 453 Score = 285 bits (730), Expect = 6e-75, Method: Composition-based stats. Identities = 74/388 (19%), Positives = 150/388 (38%), Gaps = 40/388 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLA---FQVPNL--QIFRSEPIHYRMRAEFHIWH-DG 55 L YE QL K +++ + F + + ++P YR +++ + + Sbjct: 82 GCQLQHLSYEAQLEMKKEQVINLFQRKAHFDNSKINDTVGMTDPWRYRNKSQIPVGKNEQ 141 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKL 104 +++ + Q++ + + ++ + ++ L + + + L+R + Sbjct: 142 NEVIMGFYRQRSHDIIDMESCLIQDSQHQEVMNEVKSILKDLNVSIYQEQLKKGLMRHLV 201 Query: 105 FQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQ----LIGRANKTKI 160 + Y T + VT +A E + + + K I + ++ Sbjct: 202 VRTGYHTDEMMIIFVTNGKKWSQKNAVVEKILDAFPNVTSIKQNINDSHSNVIMGRQSIT 261 Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCG 219 +D + ++LT + ++ + SF Q N+ + + + ++ L+ YCG Sbjct: 262 LYGKDTIIDQLTDS----TFKISDQSFYQINSEQTEKLYNKAIEYAQLTGNEVVLDTYCG 317 Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279 G L +A H V VE+ ++E A+ N N NN V ++E + Sbjct: 318 IGTIGLYMAPHAKHVYGVEVVPSAIEDAQQNATINQCNNTTFVCGKAEEVILQWKA---- 373 Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST 337 + + VDPPR G D+ + + I+YISCNP + RD +L+ Sbjct: 374 --------QGIKPDVVMVDPPRKGCDETFIQTLLTLEPKRIVYISCNPATQQRDALLLAE 425 Query: 338 THTIERLALFDQFPYTRHMECGVLLVRK 365 + +E + D FP T H+E L K Sbjct: 426 KYQLEEVTPVDMFPQTTHVETVALFNLK 453 >gi|311029127|ref|ZP_07707217.1| putative RNA methyltransferase [Bacillus sp. m3-13] Length = 469 Score = 285 bits (730), Expect = 7e-75, Method: Composition-based stats. Identities = 78/387 (20%), Positives = 157/387 (40%), Gaps = 41/387 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN-------LQIFRSEPIHYRMRAEFHIWHD 54 L +Y+QQL K D + Q + N I +P +YR +++F + Sbjct: 95 GCQLQHLKYDQQLTLKRDIVIQSLERHTKLNVSKLDIKPTIGMEDPWYYRNKSQFQVGKQ 154 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGS-----------LLINALMIEMMATIRLEPLLRAK 103 + + ++ + + + ID + ++ I + + +P +R Sbjct: 155 KEKVIAGLYGANSHKLIDIDNCIVQHSATTEVTNTVKKILQDFNIPVQNEKKGQPSVRTI 214 Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD 163 + ++ + T + ++T + ++ +L K +Q + KT + Sbjct: 215 MTRVGFSTGEIQVVLITTDEKLPRK---QLVVEEIQKSLPKVKSIMQNVN-GKKTSLIFG 270 Query: 164 RDYV----DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELYC 218 + + ++ + + + +F Q N V + + V AA + +++ YC Sbjct: 271 EETIHLSGEKVIQETLGDVSFELSARAFFQLNPVQTVKLYDLVKEAAQLTGKEKVVDAYC 330 Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278 G G L LA V ++ S++ A+ N + N+K V ++++ +E Sbjct: 331 GVGTIGLWLAEGAGEVRGMDTIAESIDDAKENAKRHGYTNMKYVAGKAEKWLPRWVKE-- 388 Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILS 336 +R TI VDPPR+GLD+ + V + +Y+SCNP +L +D+ LS Sbjct: 389 ----------GWRPDTIVVDPPRTGLDETFMKTVLDVEPKNFVYVSCNPSTLAKDIQFLS 438 Query: 337 TTHTIERLALFDQFPYTRHMECGVLLV 363 + ++ + D FP T H+EC LL Sbjct: 439 KKYKVDWIQPVDMFPQTAHVECCALLT 465 >gi|332974302|gb|EGK11234.1| 23S rRNA (uracil-5-)-methyltransferase [Desmospora sp. 8437] Length = 465 Score = 285 bits (730), Expect = 7e-75, Method: Composition-based stats. Identities = 79/385 (20%), Positives = 144/385 (37%), Gaps = 34/385 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFHIWHDGD 56 L Y QL K ++ + EP YR +A+ + Sbjct: 86 GCQLQHIAYPAQLESKRRQVVDAFARIGGLEEVTILPVLGMEEPWSYRNKAQVPVGGGKG 145 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATI-------RLEPLLRAKLFQIDY 109 + + + + + D + + + ++ I E R L + Sbjct: 146 KVEAGFYAAGSHQIIPFDRCLIQQPENDRTIQQVKEWIRELDIPPYDEKKHRGCLRHVMV 205 Query: 110 LTS-QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD--- 165 T + + +V L+ + ++ LR+ + IQ I ++T + L ++ Sbjct: 206 RTGIHTQEVMVVLVTNGPELPHRKQLVASLRERVPGLTSLIQNIQP-HRTNVVLGKESRV 264 Query: 166 -YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNF 223 + + + + + +SF Q N + E V +++ + YCG G Sbjct: 265 LWGEPVIHDRIGHVRFAISPHSFFQVNPVQTEVLYEQVRRMAALTGEEIIIDAYCGIGTI 324 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 L LA+ RVL VE +VE AR+N N +++ ++E RE Sbjct: 325 GLYLAKEAARVLGVESIPQAVEDARHNAELNGIDHASFEAGPAEEVMPRWARE------- 377 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCRDLSILST-THT 340 R + VDPPR G + V+ P ++Y+SCNP +L RD + L +T Sbjct: 378 -----GIRPDVMIVDPPRKGCAPELLDAAVRMSPDRLVYVSCNPATLARDAAYLKERGYT 432 Query: 341 IERLALFDQFPYTRHMECGVLLVRK 365 ++ D FP+T H+EC + R+ Sbjct: 433 NCQVQPVDMFPHTSHVECVTVFRRE 457 >gi|330685548|gb|EGG97194.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus epidermidis VCU121] Length = 453 Score = 285 bits (730), Expect = 7e-75, Method: Composition-based stats. Identities = 76/387 (19%), Positives = 145/387 (37%), Gaps = 38/387 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMM---LAFQVPNLQ--IFRSEPIHYRMRAEFHIW-HDG 55 L Y+ QL K +++ + F ++ + +P YR +++ + Sbjct: 82 GCQLQHMSYQAQLNMKKEQVVNLFHRKAKFTNTVIKDTVGMEDPWRYRNKSQIPVGLSKD 141 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKL 104 + Q++ + + ++ + LI+ L I + + LLR + Sbjct: 142 QQPIMGFYRQRSHDIIDMESCLIQDQQHQQVMNDLKQLISELNISVYNEKTKKGLLRHLV 201 Query: 105 FQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR 164 + + T +Q ++ L+ + L Q I A+ I + Sbjct: 202 VRTGHYT---NQLMIILVTNGKAFKQAESLVDALVRKYPNVTSIKQNINDAHSNVIMGPQ 258 Query: 165 D---YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGN 220 Y +E + + + + SF Q N+ + + L + + +L+ YCG Sbjct: 259 SITLYGEEEIEDQLSEVTFNISDQSFYQINSHQTEKLYQQALDYAQLTGDEIVLDTYCGI 318 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G ++ +A + V VE+ ++ A N N + N V ++E + E Sbjct: 319 GTIAIYMAENARHVYGVEVVPSAINDANQNATKNQLENTTFVCGKAEEVILKWKAE---- 374 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTT 338 R + VDPPR G D+ + + I+YISCNP + RD IL+ Sbjct: 375 --------GIRPDVVMVDPPRKGCDETFLETILELNPKRIVYISCNPSTQQRDAHILNHQ 426 Query: 339 HTIERLALFDQFPYTRHMECGVLLVRK 365 + ++ + D FP T H+E L RK Sbjct: 427 YDLKEITPVDMFPQTTHIETVALFERK 453 >gi|57652118|ref|YP_186782.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus COL] gi|87160330|ref|YP_494530.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88195795|ref|YP_500605.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus NCTC 8325] gi|151222047|ref|YP_001332869.1| RNA methyltransferase TrmA family protein [Staphylococcus aureus subsp. aureus str. Newman] gi|161510119|ref|YP_001575778.1| TrmA family RNA methyltransferase [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221141187|ref|ZP_03565680.1| TrmA family RNA methyltransferase [Staphylococcus aureus subsp. aureus str. JKD6009] gi|258451037|ref|ZP_05699073.1| RNA methyltransferase TrmA family protein [Staphylococcus aureus A5948] gi|262049941|ref|ZP_06022801.1| hypothetical protein SAD30_1411 [Staphylococcus aureus D30] gi|262053191|ref|ZP_06025349.1| hypothetical protein SA930_1196 [Staphylococcus aureus 930918-3] gi|282923236|ref|ZP_06330917.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus A9765] gi|284024943|ref|ZP_06379341.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus 132] gi|294849446|ref|ZP_06790188.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus A9754] gi|304379083|ref|ZP_07361830.1| 23S rRNA (uracil-5-)-methyltransferase [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|81694159|sp|Q5HEM5|Y1957_STAAC RecName: Full=Uncharacterized RNA methyltransferase SACOL1957 gi|57286304|gb|AAW38398.1| RNA methyltransferase, TrmA family [Staphylococcus aureus subsp. aureus COL] gi|87126304|gb|ABD20818.1| RNA methyltransferase, TrmA family [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87203353|gb|ABD31163.1| RNA methyltransferase, TrmA family, putative [Staphylococcus aureus subsp. aureus NCTC 8325] gi|150374847|dbj|BAF68107.1| RNA methyltransferase TrmA family protein [Staphylococcus aureus subsp. aureus str. Newman] gi|160368928|gb|ABX29899.1| TrmA family RNA methyltransferase [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|257861279|gb|EEV84091.1| RNA methyltransferase TrmA family protein [Staphylococcus aureus A5948] gi|259158918|gb|EEW44004.1| hypothetical protein SA930_1196 [Staphylococcus aureus 930918-3] gi|259161949|gb|EEW46531.1| hypothetical protein SAD30_1411 [Staphylococcus aureus D30] gi|282593147|gb|EFB98146.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus A9765] gi|294823583|gb|EFG40010.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus A9754] gi|302751769|gb|ADL65946.1| putative RNA methyltransferase [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304342318|gb|EFM08210.1| 23S rRNA (uracil-5-)-methyltransferase [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|315196232|gb|EFU26587.1| TrmA family RNA methyltransferase [Staphylococcus aureus subsp. aureus CGS01] gi|320139723|gb|EFW31592.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus subsp. aureus MRSA131] gi|320142360|gb|EFW34174.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus subsp. aureus MRSA177] gi|329314573|gb|AEB88986.1| Uncharacterized RNA methyltransferase [Staphylococcus aureus subsp. aureus T0131] gi|329728677|gb|EGG65107.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus subsp. aureus 21189] Length = 453 Score = 285 bits (730), Expect = 7e-75, Method: Composition-based stats. Identities = 73/388 (18%), Positives = 149/388 (38%), Gaps = 40/388 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLA---FQVPNL--QIFRSEPIHYRMRAEFHIWH-DG 55 L YE QL K +++ + F + + ++P YR +++ + + Sbjct: 82 GCQLQHLSYEAQLEMKKEQVINLFQRKAHFDNSKINDTVGMTDPWRYRNKSQIPVGKNEQ 141 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKL 104 +++ + Q++ + + ++ + ++ L + + + L+R + Sbjct: 142 NEVIMGFYRQRSHDIIDMESCLIQDSQHQEVMNEVKSILKDLNVSIYQEQLKKGLMRHLV 201 Query: 105 FQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQ----LIGRANKTKI 160 + Y T + VT +A E + + + K I + ++ Sbjct: 202 VRTGYHTDEMMIIFVTNGKKWPQKNAVVEKILDAFPNVTSIKQNINDSHSNVIMGRQSIT 261 Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCG 219 +D + ++LT + ++ + SF Q N+ + + + ++ L+ YCG Sbjct: 262 LYGKDTIIDQLTDS----TFKISDQSFYQINSEQTEKLYNKAIEYAQLTGNEVVLDTYCG 317 Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279 G L +A V VE+ ++E A+ N N NN V ++E + Sbjct: 318 IGTIGLYMAPLAKHVYGVEVVPSAIEDAQQNATINQCNNTTFVCGKAEEVILQWKA---- 373 Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST 337 + + VDPPR G D+ + + I+YISCNP + RD +L+ Sbjct: 374 --------QGIKPDVVMVDPPRKGCDETFIQTLLTLEPKRIVYISCNPATQQRDALLLAE 425 Query: 338 THTIERLALFDQFPYTRHMECGVLLVRK 365 + +E + D FP T H+E L K Sbjct: 426 KYQLEEVTPVDMFPQTTHVETVALFNLK 453 >gi|227515533|ref|ZP_03945582.1| TrmA family tRNA (uracil-5-)-methyltransferase [Lactobacillus fermentum ATCC 14931] gi|227086146|gb|EEI21458.1| TrmA family tRNA (uracil-5-)-methyltransferase [Lactobacillus fermentum ATCC 14931] Length = 458 Score = 285 bits (729), Expect = 8e-75, Method: Composition-based stats. Identities = 76/378 (20%), Positives = 148/378 (39%), Gaps = 39/378 (10%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ 65 Y QL K ++++++ + NL++ +P YR +A+ + + + Sbjct: 94 YPAQLKFKQRQIQELLEKAHL-NLEVAETLGMDQPFGYRNKAQVPVRMVKGQPTTGFYKR 152 Query: 66 QTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKLFQIDYLTSQS 114 + + + I+ F I+ ++ + +R ++R + + Y + Q Sbjct: 153 GSHDLVPIEDFYIQDPAIDQTVLVVRDLLRKYQVPAYDEETHRGVIRTVMVRRGYYSHQV 212 Query: 115 DQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYV---DERL 171 +VT H E + + + K +Q + I ++++ + + Sbjct: 213 MVVLVTNGEH---FPHVAEITREISERVPGIKSIVQNVNDKRTNVILGTKNHLLWGEPTI 269 Query: 172 TVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNFSLVLARH 230 + + SF Q N + + + A +++ YCG G SL +A+H Sbjct: 270 HDTLLGIDFTISPLSFYQVNPQQTERLYQTAIENAGLDGSKTVIDAYCGIGTISLAVAKH 329 Query: 231 FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY 290 V VEI ++ A+ N A N + N V ++E + E Sbjct: 330 AKHVYGVEIVPAAIADAKQNAANNGIENATFVVGKAEEQFAKWQAE------------GL 377 Query: 291 RFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST-THTIER-LAL 346 + + VDPPR GLD + A ++Y+SCNP +L RDL + + + + + Sbjct: 378 KPDVVIVDPPRKGLDAQLIEATGKMAPQKVIYVSCNPATLVRDLQRFAEQGYHVTKPIQP 437 Query: 347 FDQFPYTRHMECGVLLVR 364 DQFP T H+E +L R Sbjct: 438 VDQFPQTTHVESVTVLER 455 >gi|227498264|ref|ZP_03928414.1| RNA methyltransferase [Acidaminococcus sp. D21] gi|226903726|gb|EEH89644.1| RNA methyltransferase [Acidaminococcus sp. D21] Length = 460 Score = 285 bits (729), Expect = 9e-75, Method: Composition-based stats. Identities = 80/388 (20%), Positives = 147/388 (37%), Gaps = 41/388 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHI-WHDG 55 + YE QL +K + + N + +P HYR + + + Sbjct: 86 GCQIQHLAYEAQLVQKRQTVIDALERIGHFSGINVNPTLGADDPWHYRNKMQVPVAEGKK 145 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKL 104 L F Q T + + + N L + A + ++R + Sbjct: 146 HSLSIGCFAQGTHHVIDVKRCLIQHDANNELTAVVRAWMERYHIPALKEDARTGIVRHIM 205 Query: 105 FQIDYLTSQSDQAIVTLI----YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKI 160 ++ T + +VT + + L +E + + + K+ Sbjct: 206 GRVGVQTGEVMAVLVTNTDRVPHLKELTHMLKEAIPGFVTLVQNVNTRHTNVIMGPHNKV 265 Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCG 219 + +RL L + +SF Q N + E L+ A + ++++LYCG Sbjct: 266 IYGPGVIHDRLG----DLTFVISPHSFFQVNTLQAQRLYETALSYAALEGKENVIDLYCG 321 Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279 G +L LA+ L +EI P++ AR N NH+ N + + + + + R+ Sbjct: 322 TGTITLFLAQKARHALGIEIVAPAIADARKNARDNHIKNSEFICADAAKELPLLVRD--- 378 Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILST 337 R + +DPPR+G + + + A ++Y+SC P SL RD +IL Sbjct: 379 ---------GIRPDVVVLDPPRAGCERPVLDAILAVRPKRVVYVSCGPASLARDAAILCE 429 Query: 338 -THTIERLALFDQFPYTRHMECGVLLVR 364 + I ++ D FP+T H+E VL+ R Sbjct: 430 GGYNIRQVQPVDMFPHTSHVETVVLMSR 457 >gi|163789372|ref|ZP_02183811.1| RNA methyltransferase, TrmA family protein [Carnobacterium sp. AT7] gi|159875226|gb|EDP69291.1| RNA methyltransferase, TrmA family protein [Carnobacterium sp. AT7] Length = 458 Score = 285 bits (729), Expect = 9e-75, Method: Composition-based stats. Identities = 84/384 (21%), Positives = 151/384 (39%), Gaps = 40/384 (10%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAF-QVPNLQIF----RSEPIHYRMRAEFHIWHDGDDLY 59 L +Y QL K ++ M ++P + ++ + P YR +A+ + D L Sbjct: 90 LQHMRYPAQLNFKKQQVMNSMQRIAKLPEVPVYDTIGMANPSGYRNKAQIPVRKINDKLT 149 Query: 60 HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-----------LRAKLFQID 108 F + + E + ++ F I+ +I + +R + LR + + Sbjct: 150 TGFFRKNSHEVIPMENFYIQDPKIDETIIAVRDIMREYGVKPYNENENTGNLRHIIVRRG 209 Query: 109 YLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR 164 Y T + +VT L + E + + + + + + Sbjct: 210 YYTGEIMIVLVTRTAKLFPTSKIIPDIIEAIPEVVSIVQNVNPKHTNVIMGDDAIVLYGE 269 Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNF 223 D + L + SF Q N + + VL A + +++ Y G G Sbjct: 270 DKYKDTLLGN----TFEISHRSFYQVNPQQTEKLYQTVLDFAELTGEETVIDAYSGIGTI 325 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 +L LA++ V +EI +P+V A+ N N++ NV +++E E Sbjct: 326 ALTLAKNAKHVYGIEIIEPAVVNAKANAELNNIENVTFEAGAAEEVMVQWSEE------- 378 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSIL-STTHT 340 + VDPPR GL+ V A ++Y+SCNP +L RDL++L +T Sbjct: 379 -----GRTADLLVVDPPRKGLEKEFTEAVIAMKPTKMVYVSCNPATLARDLALLTEGGYT 433 Query: 341 IERLALFDQFPYTRHMECGVLLVR 364 ++++ D FP T H+E LLVR Sbjct: 434 VKKVQPVDLFPQTTHVESVALLVR 457 >gi|293385052|ref|ZP_06630886.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis R712] gi|293389323|ref|ZP_06633784.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis S613] gi|312906041|ref|ZP_07765054.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis DAPTO 512] gi|312909387|ref|ZP_07768243.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis DAPTO 516] gi|291077730|gb|EFE15094.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis R712] gi|291081345|gb|EFE18308.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis S613] gi|310628036|gb|EFQ11319.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis DAPTO 512] gi|311290411|gb|EFQ68967.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis DAPTO 516] Length = 504 Score = 285 bits (729), Expect = 9e-75, Method: Composition-based stats. Identities = 79/379 (20%), Positives = 150/379 (39%), Gaps = 40/379 (10%) Query: 10 YEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 Y QL+ K ++ +M I ++P HYR +A+ + + L F Sbjct: 139 YGAQLSFKTQQVENVMQRVAKLPEVPVLPTIGMNDPWHYRNKAQIPVRKIDNQLQTGFFR 198 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKLFQIDYLTSQ 113 + + + + +++F I+A ++++ +R LR + + Y T + Sbjct: 199 KNSHDLIPMEHFYIQDPEIDAAIVKIRDIMRKYSVKPYNESDNTGNLRHIVVRRGYHTGE 258 Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD----YVDE 169 ++T L + L +A+ +Q + T + + + E Sbjct: 259 MMVVLITRTP--KLFPISKIVPDIL-EAIPEVVSIVQNVNPKR-TNVIFGDETILLHGSE 314 Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLA 228 ++T L + SF Q N M + V + +++ YCG G L LA Sbjct: 315 KITDTIFDLKFEISARSFYQVNPQQTEVMYQKVKEYAALTGNEIVVDAYCGIGTIGLTLA 374 Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288 + +V +E+ + +V+ A N N++ N ++E L + + Sbjct: 375 QDAKQVYGIEVIEEAVKDAENNAKLNNIENATFTAGLAEEL------------LPKLVEN 422 Query: 289 SYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STTHTIERLA 345 + + VDPPR GLD V + I+Y+SCNP +L RD+++L + + + Sbjct: 423 GLQPDVVVVDPPRKGLDGQLVNTLIETQPKRIVYVSCNPATLARDIALLTEGGYEAKEIQ 482 Query: 346 LFDQFPYTRHMECGVLLVR 364 D FP T H+E LL + Sbjct: 483 PVDNFPQTTHIESVTLLTK 501 >gi|160879797|ref|YP_001558765.1| RNA methyltransferase [Clostridium phytofermentans ISDg] gi|160428463|gb|ABX42026.1| RNA methyltransferase, TrmA family [Clostridium phytofermentans ISDg] Length = 554 Score = 285 bits (729), Expect = 9e-75, Method: Composition-based stats. Identities = 78/387 (20%), Positives = 151/387 (39%), Gaps = 43/387 (11%) Query: 2 SGTLLID-QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHD-GDDLY 59 G +D YE+QL K ++ +++ F + + P HYR + + D ++ Sbjct: 185 GGCHYLDLPYEEQLKIKQKQVSKLLSDFCKVHPILGMEHPYHYRNKVQAVFGRDAKGNII 244 Query: 60 HIMFDQQTKERMRIDYFMPGSLLINAL-----------MIEMMATIRLEPLLRAKLFQID 108 ++ + T + + + + + I+ LLR L + Sbjct: 245 SGVYKEGTHQIIPTTSCLIEDKKADEIIGTIRGMLKSFKIKTYDEDSGYGLLRYVLVKRG 304 Query: 109 YLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGR-------ANKTKIC 161 + S + +V L+ + + + LR A + I ++ + Sbjct: 305 F---TSGEIMVVLVIASPILPSKKNFVAALRKAHPEITTIVLNINNRTDSLILGDRETVL 361 Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELYCGN 220 + Y+++ L ++R SF Q N + + + AA + +++ YCG Sbjct: 362 YGKGYIEDTLCGN----VFRISSKSFYQVNPVQTERLYQLAIKAAGLTGKERVIDAYCGI 417 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G LV +++ VL VE+ K +++ A N N + N + EF AM Sbjct: 418 GTIGLVASKNAKEVLGVEVNKEAIKDAIANAKRNGITNEHFYNSDATEFMLAMAE----- 472 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSIL-ST 337 + + +DPPR+G + + V++ ++YISCNP +L RDL Sbjct: 473 -------KGEKADVVIMDPPRAGSTEQFIDAVESVQPSRVVYISCNPVTLQRDLKYFTKK 525 Query: 338 THTIERLALFDQFPYTRHMECGVLLVR 364 + ++ D FP+T H+E LL + Sbjct: 526 GYQVKEAWPVDMFPWTGHVETVCLLYK 552 >gi|325570600|ref|ZP_08146326.1| 23S rRNA (uracil-5-)-methyltransferase [Enterococcus casseliflavus ATCC 12755] gi|325156446|gb|EGC68626.1| 23S rRNA (uracil-5-)-methyltransferase [Enterococcus casseliflavus ATCC 12755] Length = 465 Score = 285 bits (729), Expect = 9e-75, Method: Composition-based stats. Identities = 84/387 (21%), Positives = 153/387 (39%), Gaps = 46/387 (11%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAF-QVPNL----QIFRSEPIHYRMRAEFHIWHDGDDLY 59 L Y++QLA K ++ ++ ++P + I +P YR +A+ + +L Sbjct: 97 LSHLSYDKQLAFKQQQVENVLAKIAKLPEITVNAPIGMEKPFGYRNKAQIPVQKIHGELT 156 Query: 60 HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKLFQID 108 + + + + I+ F I+ +I++ ++ E LR + + Sbjct: 157 TGFYRKNSHTLVPIEDFYIQDPNIDQAIIKVRDILQRFNVKAYNEEAHEGFLRHIVVRRG 216 Query: 109 YLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANK-------TKIC 161 + S + +V L+ + E A + + + IQ I ++ Sbjct: 217 H---HSGEMMVVLVTRKPKFFKGEEIAEVIHEEIPEVVSVIQNINEEKTNVIMGEFERVL 273 Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGN 220 + +D++L ++ SF Q N + + + D++ + Y G Sbjct: 274 YGKSSIDDQLLGK----TFQISAKSFYQVNTAQTEVLYQTAFKMAHLSENDVVVDAYAGI 329 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G + LA VL +E+ +V A+ N N V NV +++ RE Sbjct: 330 GTIGISLADRVKEVLGMEVIPEAVNDAKANAKRNGVENVHYFIGKAEKIMPQWLRE---- 385 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSIL-ST 337 + +FVDPPR GLD + + A I+YISCNP +L RDL++ Sbjct: 386 --------GIQPTVVFVDPPRKGLDASFIETTAAVKPERIVYISCNPATLARDLALFAEE 437 Query: 338 THTIERLALFDQFPYTRHMECGVLLVR 364 + + + D FP T H+EC VLL R Sbjct: 438 GYVTKEVQPVDLFPQTTHVECVVLLER 464 >gi|291537891|emb|CBL11002.1| 23S rRNA m(5)U-1939 methyltransferase [Roseburia intestinalis XB6B4] Length = 475 Score = 285 bits (729), Expect = 9e-75, Method: Composition-based stats. Identities = 86/398 (21%), Positives = 154/398 (38%), Gaps = 41/398 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ--VPNLQ-------IFRSEPIHYRMRAEFHIW 52 + YE+QL K +++R ++ P L + EP YR +A+F I Sbjct: 79 GCQIQALDYEKQLEFKQNKVRGNLIRIGGFAPELIDRIMLPVVGMKEPYRYRNKAQFPIG 138 Query: 53 HDGD-DLYHIMFDQQTKERMRIDYFMPGSL----LINA-------LMIEMMATIRLEPLL 100 D D + + +T + ++ G ++N + + L+ Sbjct: 139 ADKDGNPVAGFYAARTHSIIPVNDCKLGVEENQIILNEVLSYMKEYHVASYDENTGKGLV 198 Query: 101 RAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRL---RDALHARKYQIQLIGRANK 157 R L + + T + ++ + + + + + + + + Sbjct: 199 RHVLIRYGFSTKELMVCVIINGNSLPKVEKLIDRLTAIEGMKSISINQNTKKTNVILGDV 258 Query: 158 TKICLDRDYVDERLTV--------AGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKG 208 TK Y+ + + + + Y SF Q N + L A Sbjct: 259 TKCIWGDPYITDMIHLRDTKDFSLTDTAVAYHISPQSFYQVNPVQTEKLYSLALDYAGLT 318 Query: 209 IQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268 + + +LYCG G SL LA+ +V VEI ++E A+ N A N +NN + ++E Sbjct: 319 GKETVWDLYCGIGTISLFLAQKAGKVYGVEIVPQAIEDAKNNAALNGINNAEFFVGKAEE 378 Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPD 326 A + + KD D I VDPPR G D + M++ P I+Y+SC+ Sbjct: 379 VLPAF-----YEKKKDTDADMLHPDVIVVDPPRKGCDGVCLETMLKMQPERIVYVSCDSA 433 Query: 327 SLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLV 363 +L RDL +L + + ++ DQF T H+E VL+ Sbjct: 434 TLARDLKVLCEGGYELCKVRAVDQFGNTTHVESVVLMQ 471 >gi|150019658|ref|YP_001311912.1| RNA methyltransferase [Clostridium beijerinckii NCIMB 8052] gi|149906123|gb|ABR36956.1| RNA methyltransferase, TrmA family [Clostridium beijerinckii NCIMB 8052] Length = 459 Score = 284 bits (728), Expect = 1e-74, Method: Composition-based stats. Identities = 83/392 (21%), Positives = 151/392 (38%), Gaps = 45/392 (11%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56 TL+ Y+ QL K +R++ + + I P YR + + I + Sbjct: 80 GCTLMHSNYDSQLKFKYNRVKDCIERIGGLSGDIVKNTIGMEFPYRYRNKGIYSIALTDN 139 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSL---LINALMIEMMATIRLEPLLRAKLFQIDYLTS- 112 +L F ++T E + +D + I ++ M + P + LF + L Sbjct: 140 ELSMGFFSEKTHEVVDMDKCLIQDEETDKIIKIIRNWMKKYSILPARKDNLFFSEGLIRN 199 Query: 113 -------QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGR-------ANKT 158 ++++ +V LI E +R + K IQ I +K Sbjct: 200 VMVRNGFKTNEIMVVLITTDKEIPKKEELIKDIRLEVENLKGVIQNISTKNNSLVLGDKC 259 Query: 159 KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLEL 216 +DY+ + + + SF Q N + L + GD + + Sbjct: 260 ITLWGQDYISDYIG----KYKFNISPLSFFQINPIQTEVLYNKALE-YADLSGDEIVFDA 314 Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276 YCG G +L L+++ +V VEI + +++ A N N ++N + S+E Sbjct: 315 YCGAGTITLFLSQNARKVYGVEIVEQAIDNAIDNAEINGIDNSEFYVGKSEEV------- 367 Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSI 334 + ++ + + I VDPPR G D + + ++Y+SC+P +L RDL Sbjct: 368 -----IPELIKNGIKPDIIVVDPPRKGCDIKLLNAIGEAKPKRVVYVSCDPSTLARDLKH 422 Query: 335 LST-THTIERLALFDQFPYTRHMECGVLLVRK 365 L + D FP T+H+E LL ++ Sbjct: 423 LEGFGFKTIEVQPVDMFPNTKHVETVALLTKR 454 >gi|295114059|emb|CBL32696.1| 23S rRNA m(5)U-1939 methyltransferase [Enterococcus sp. 7L76] Length = 457 Score = 284 bits (728), Expect = 1e-74, Method: Composition-based stats. Identities = 81/379 (21%), Positives = 151/379 (39%), Gaps = 40/379 (10%) Query: 10 YEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 Y QL+ K ++ +M I ++P HYR +A+ + + L F Sbjct: 92 YGAQLSFKTQQVENVMQRVAKLPEVPVLPTIGMNDPWHYRNKAQIPVRKIDNQLQTGFFR 151 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKLFQIDYLTSQ 113 + + + + +++F I+A ++++ +R LR + + Y T + Sbjct: 152 KNSHDLIPMEHFYIQDPEIDAAIVKIRDIMRKYSVKPYNESDNTGNLRHIVVRRGYHTGE 211 Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD----YVDE 169 ++T L + L +A+ +Q + T + + + E Sbjct: 212 MMVVLITRTP--KLFPISKIVPDIL-EAIPEVVSIVQNVNPKR-TNVIFGDETILLHGSE 267 Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLA 228 ++T L + SF Q N M + V + +++ YCG G L LA Sbjct: 268 KITDTIFDLKFEISARSFYQVNPQQTEVMYQKVKEYAALTGNEIVVDAYCGIGTIGLTLA 327 Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288 + +V +E+ + +V+ A N N++ N ++E L + + Sbjct: 328 QDAKQVYGIEVIEEAVKDAENNAKLNNIENATFTAGLAEEL------------LPKLVEN 375 Query: 289 SYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STTHTIERLA 345 + + VDPPR GLD V + I+Y+SCNP +L RD+++L + + + Sbjct: 376 GLQPDVVVVDPPRKGLDGQLVNTLIETQPERIVYVSCNPATLARDIALLTEGGYEAKEIQ 435 Query: 346 LFDQFPYTRHMECGVLLVR 364 D FP T H+EC LL R Sbjct: 436 PVDNFPQTTHIECVGLLTR 454 >gi|257868017|ref|ZP_05647670.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus casseliflavus EC30] gi|257874347|ref|ZP_05654000.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus casseliflavus EC10] gi|257802100|gb|EEV31003.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus casseliflavus EC30] gi|257808511|gb|EEV37333.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus casseliflavus EC10] Length = 474 Score = 284 bits (728), Expect = 1e-74, Method: Composition-based stats. Identities = 84/388 (21%), Positives = 154/388 (39%), Gaps = 46/388 (11%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAF-QVPNL----QIFRSEPIHYRMRAEFHIWHDGDDLY 59 L Y++QLA K ++ ++ ++P + I +P YR +A+ + L Sbjct: 106 LSHLSYDKQLAFKQQQVENVLAKIAKLPEIKVKAPIGMEKPFGYRNKAQIPVQKIHGKLT 165 Query: 60 HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKLFQID 108 + + + + I+ F I+ +I++ ++ E LR + + Sbjct: 166 TGFYRKNSHTLVPIEDFYIQDPNIDQAIIKVRDILQRFNVKAYNEEAHEGFLRHIVVRRG 225 Query: 109 YLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANK-------TKIC 161 + S + +V L+ + E A + + + IQ I ++ Sbjct: 226 H---HSGEMMVVLVTRKPKFFKGEEIAEVIHEEIPEVVSVIQNINEEKTNVIMGEFERVL 282 Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGN 220 + +D++L ++ SF Q N + + + + D +++ Y G Sbjct: 283 YGKSSIDDQLLGK----TFQISAKSFYQINTAQTEVLYQTAFEMAQLSENDIVVDAYAGI 338 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G + LA VL +E+ +V A+ N N V NV +++ RE Sbjct: 339 GTIGISLADRVKEVLGMEVIPEAVNDAKANAKRNGVENVHYFIGKAEKIMPQWLRE---- 394 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSIL-ST 337 + +FVDPPR GLD + + A I+YISCNP +L RDL++ Sbjct: 395 --------GIQPTVVFVDPPRKGLDASFIETTAAVKPERIVYISCNPATLARDLALFEEE 446 Query: 338 THTIERLALFDQFPYTRHMECGVLLVRK 365 + + + D FP T H+EC VLL R+ Sbjct: 447 GYVTKEVQPVDLFPQTTHVECVVLLERR 474 >gi|260662798|ref|ZP_05863692.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus fermentum 28-3-CHN] gi|260552879|gb|EEX25878.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus fermentum 28-3-CHN] Length = 458 Score = 284 bits (728), Expect = 1e-74, Method: Composition-based stats. Identities = 76/378 (20%), Positives = 148/378 (39%), Gaps = 39/378 (10%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ 65 Y QL K ++++++ + NL++ +P YR +A+ + + + Sbjct: 94 YPAQLKFKQRQIQELLEKAHL-NLEVAETLGMDQPFGYRNKAQVPVRMVKGQPTTGFYKR 152 Query: 66 QTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKLFQIDYLTSQS 114 + + + I+ F I+ ++ + +R ++R + + Y + Q Sbjct: 153 GSHDLVPIEDFYIQDPAIDQTVLVVRDLLRKYQVPAYDEETHRGVIRTVMVRRGYYSHQV 212 Query: 115 DQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYV---DERL 171 +VT H E + + + K +Q + I ++++ + + Sbjct: 213 MVVLVTNGEH---FPHVAEITREISERVPGIKSIVQNVNDKRTNVILGTKNHLLWGEPTI 269 Query: 172 TVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNFSLVLARH 230 + + SF Q N + + + A +++ YCG G SL +A+H Sbjct: 270 HDTLLGIDFTISPLSFYQVNPQQTERLYQTAIENAGLDGSQTVIDAYCGIGTISLAVAKH 329 Query: 231 FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY 290 V VEI ++ A+ N A N + N V ++E + E Sbjct: 330 AKHVYGVEIVPAAIADAKQNAANNGIENATFVVGKAEEQFAKWQAE------------GL 377 Query: 291 RFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST-THTIER-LAL 346 + + VDPPR GLD + A ++Y+SCNP +L RDL + + + + + Sbjct: 378 KPDVVIVDPPRKGLDAQLIEATGKMAPQKVIYVSCNPATLVRDLQRFAEQGYHVTKPIQP 437 Query: 347 FDQFPYTRHMECGVLLVR 364 DQFP T H+E +L R Sbjct: 438 VDQFPQTTHVESVTVLER 455 >gi|325507937|gb|ADZ19573.1| SAM-dependent methyltransferase [Clostridium acetobutylicum EA 2018] Length = 460 Score = 284 bits (728), Expect = 1e-74, Method: Composition-based stats. Identities = 79/389 (20%), Positives = 147/389 (37%), Gaps = 42/389 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL-------QIFRSEPIHYRMRAEFHIWHD 54 L +Y +QL K +++ + + +L I +P YR + + + Sbjct: 85 GCQLQHLKYTEQLEFKKNKVVECLKRIGKLDLSSVRINETIGMEDPYFYRNKVQLPVGET 144 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGS-----------LLINALMIEMMATIRLEPLLRAK 103 + + +++ E + +D I IE + LR Sbjct: 145 AGEAKIGFYRERSHEIIEVDKCFIQDDSANEIILLIKRWIKEFNIEGYNEYSGKGTLRHI 204 Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD 163 + + + T Q +VT + +E + + K IQ I KT + L Sbjct: 205 MIRKAFKTGQIMLVLVTNTENVP---HKKELIHMITTEIQGIKGIIQNINN-KKTNVILG 260 Query: 164 RD----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYC 218 + + + + + SF Q N + L +++ + YC Sbjct: 261 QREITLWGESTIEDYIGEFKFNISSKSFFQMNPIQTEKLYSAALKYAGLTGKEVVFDAYC 320 Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278 G G SL L+++ +V VEI ++E A+ N N + N + + S+E Sbjct: 321 GTGTISLFLSQNAKKVYGVEIIPEAIENAKINAKQNGIENTEFIVGKSEE---------- 370 Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILS 336 + + + + VDPPR G + + + + + I+Y+SC+P +L RDL ILS Sbjct: 371 --EIPKLIEKGIAPEVVVVDPPRKGCEKSLLHSIAEASPKTIVYVSCDPATLSRDLGILS 428 Query: 337 T-THTIERLALFDQFPYTRHMECGVLLVR 364 + + + D FP T H+E VL+ R Sbjct: 429 ELGYEVNEVQPVDMFPMTGHVETIVLIKR 457 >gi|312865944|ref|ZP_07726165.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus downei F0415] gi|311098348|gb|EFQ56571.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus downei F0415] Length = 453 Score = 284 bits (728), Expect = 1e-74, Method: Composition-based stats. Identities = 84/383 (21%), Positives = 152/383 (39%), Gaps = 40/383 (10%) Query: 9 QYEQQLAEKVDRLRQMMLAFQV-----PNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63 YE+QL K ++ + I P YR +A+ + L F Sbjct: 87 SYEKQLEFKRKQVVNNLSKIAGLTNIEVLPTIGMDHPYAYRNKAQVPVRRVNGQLETGFF 146 Query: 64 DQQTKERMRIDYFMPGSLLINALMI---EMMATIRLEP--------LLRAKLFQIDYLTS 112 + + + + I+ F I+ L+I +++ L+P L+R + + + T Sbjct: 147 RKNSHDLVPIEDFYIQDKEIDKLIIFVRDLLRRFDLKPYDEKEQTGLIRNLVVRRGHYTG 206 Query: 113 QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD----YVD 168 ++ +VT R + ++ A IQ I N T + + Y Sbjct: 207 ETMLVLVT---TRPKIFRIEQIIQQITQAFPEVVSIIQNINDKN-TNVVFGPEFRTLYGK 262 Query: 169 ERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVL 227 + ++ + YR SF Q N + + + + + D+ ++ Y G G L L Sbjct: 263 DTISDSLLGKTYRISAQSFYQVNTLMAEKLYQTAIDFSNLTAEDVVIDAYSGIGTIGLSL 322 Query: 228 ARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDI 287 A+ +V VE+ + +VE A N AN V+N V +++ A + Sbjct: 323 AQEVKQVYGVEVVEKAVEDAMENARANGVSNADYVCAPAEKAMVAWSKA----------- 371 Query: 288 HSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILST-THTIERL 344 + + VDPPR GL ++ + A I YISCNP ++ RD+ + + ++ Sbjct: 372 -GIKPSAVLVDPPRKGLTESFIKASAAMQPKKITYISCNPATMARDIKLYEELGFKLTKV 430 Query: 345 ALFDQFPYTRHMECGVLLVRKPS 367 D FP T H+E VL+ R+ + Sbjct: 431 QPVDLFPQTHHVETVVLMSRRDT 453 >gi|184155945|ref|YP_001844285.1| RNA methyltransferase [Lactobacillus fermentum IFO 3956] gi|183227289|dbj|BAG27805.1| RNA methyltransferase [Lactobacillus fermentum IFO 3956] Length = 458 Score = 284 bits (728), Expect = 1e-74, Method: Composition-based stats. Identities = 76/378 (20%), Positives = 148/378 (39%), Gaps = 39/378 (10%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ 65 Y QL K ++++++ + NL++ +P YR +A+ + + + Sbjct: 94 YPAQLKFKQRQIQKLLEKAHL-NLEVAETLGMDQPFGYRNKAQVPVRMVKGQPTTGFYKR 152 Query: 66 QTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKLFQIDYLTSQS 114 + + + I+ F I+ ++ + +R ++R + + Y + Q Sbjct: 153 GSHDLVPIEDFYIQDPAIDQTVLVVRDLLRKYQVPAYDEETHRGVIRTVMVRRGYYSHQV 212 Query: 115 DQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYV---DERL 171 +VT H E + + + K +Q + I ++++ + + Sbjct: 213 MVVLVTNGEH---FPHVAEITREISERVPGIKSIVQNVNDKRTNVILGTKNHLLWGEPTI 269 Query: 172 TVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNFSLVLARH 230 + + SF Q N + + + A +++ YCG G SL +A+H Sbjct: 270 HDNLLGIDFTISPLSFYQVNPQQTERLYQTAIENAGLDGSQTVIDAYCGIGTISLAVAKH 329 Query: 231 FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY 290 V VEI ++ A+ N A N + N V ++E + E Sbjct: 330 AKHVYGVEIVPAAIADAKQNAANNGIENATFVVGKAEEQFAKWQAE------------GL 377 Query: 291 RFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST-THTIER-LAL 346 + + VDPPR GLD + A ++Y+SCNP +L RDL + + + + + Sbjct: 378 KPDVVIVDPPRKGLDAQLIEATGKMAPQKVIYVSCNPATLVRDLQRFAEQGYHVTKPIQP 437 Query: 347 FDQFPYTRHMECGVLLVR 364 DQFP T H+E +L R Sbjct: 438 VDQFPQTTHVESVTVLER 455 >gi|256959863|ref|ZP_05564034.1| RNA methyltransferase [Enterococcus faecalis Merz96] gi|256950359|gb|EEU66991.1| RNA methyltransferase [Enterococcus faecalis Merz96] Length = 457 Score = 284 bits (728), Expect = 1e-74, Method: Composition-based stats. Identities = 79/379 (20%), Positives = 150/379 (39%), Gaps = 40/379 (10%) Query: 10 YEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 Y QL+ K ++ +M I ++P HYR +A+ + + L F Sbjct: 92 YGAQLSFKTQQVENVMQRVAKLPEVPVLPTIGMNDPWHYRNKAQIPVRKIDNQLQTGFFR 151 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKLFQIDYLTSQ 113 + + + + +++F I+A ++++ +R LR + + Y T + Sbjct: 152 KNSHDLIPMEHFYIQDPEIDAAIVKIRDIMRKYSVKPYNESDNTGNLRHIVVRRGYHTGE 211 Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD----YVDE 169 ++T L + L +A+ +Q + T + + + E Sbjct: 212 MMVVLITRTP--KLFPISKIVPDIL-EAIPEVVSIVQNVNPKR-TNVIFGDETILLHGSE 267 Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLA 228 ++T L + SF Q N M + V + +++ YCG G L LA Sbjct: 268 KITDTIFDLKFEISARSFYQVNPQQTEVMYQKVKEYAALTGNEIVVDAYCGIGTIGLTLA 327 Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288 + +V +E+ + +V+ A N N++ N ++E L + + Sbjct: 328 QDAKQVYGIEVIEEAVKDAENNAKLNNIENATFTAGLAEEL------------LPKLVEN 375 Query: 289 SYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STTHTIERLA 345 + + VDPPR GLD V + I+Y+SCNP +L RD+++L + + + Sbjct: 376 GLQPDVVVVDPPRKGLDGQLVNTLIETQPKRIVYVSCNPATLARDIALLTEGGYEAKEIQ 435 Query: 346 LFDQFPYTRHMECGVLLVR 364 D FP T H+E LL + Sbjct: 436 PVDNFPQTTHIESVTLLTK 454 >gi|310658947|ref|YP_003936668.1| RNA methyltransferase [Clostridium sticklandii DSM 519] gi|308825725|emb|CBH21763.1| Uncharacterized RNA methyltransferase BCE_0363 [Clostridium sticklandii] Length = 475 Score = 284 bits (728), Expect = 1e-74, Method: Composition-based stats. Identities = 78/387 (20%), Positives = 139/387 (35%), Gaps = 41/387 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFHIWHDG- 55 ++ Y +QL K D + Q + I P +YR +A+F + D Sbjct: 97 GCQIMQLNYSKQLEIKKDIVVQNLSRIGKVENPNVMDTIGMDNPYNYRNKAQFPVGIDKK 156 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGSLL-----------INALMIEMMATIRLEPLLRAKL 104 F + + E + + + I I + + LR + Sbjct: 157 GKPVMGFFKKMSHEIIPLTTCYVQDTVNDVILDIIRQYIEKYKISLYDEKTHKGNLRHVV 216 Query: 105 FQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIR----LRDALHARKYQIQLIGRANKTKI 160 ++ + T + +VT DA E LR + + + KI Sbjct: 217 TKVGFHTHEIMVILVTKETKLPKIDALVEMLEAKLLGLRTLVQNINPNRTNVILGRENKI 276 Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCG 219 +++ + L++ SF Q N + L D++ ++YCG Sbjct: 277 LYGDGIIEDTI----DDLVFEISPLSFYQVNPIQTKVLYNKALELADISSEDVVYDIYCG 332 Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279 G SL LA+ V +EI K ++E A+ N N++ N ++E + Sbjct: 333 IGTISLFLAKKAKHVYGIEIVKEAIENAKKNAKRNNIENASFYAGKAEEVVPELYS---- 388 Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILST 337 + VDPPR G ++ + + I+YISCNP +L RD+ LS Sbjct: 389 --------RGITADVVVVDPPRKGCEEIVLDTIAKMNPKKIVYISCNPSTLARDVERLSK 440 Query: 338 -THTIERLALFDQFPYTRHMECGVLLV 363 + ++ D F +T H+E +L+ Sbjct: 441 LGYEMDVAYPVDMFSHTMHVEAIILMT 467 >gi|154496443|ref|ZP_02035139.1| hypothetical protein BACCAP_00735 [Bacteroides capillosus ATCC 29799] gi|150274526|gb|EDN01603.1| hypothetical protein BACCAP_00735 [Bacteroides capillosus ATCC 29799] Length = 412 Score = 284 bits (728), Expect = 1e-74, Method: Composition-based stats. Identities = 84/387 (21%), Positives = 150/387 (38%), Gaps = 42/387 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHI-WHDGDDLYH 60 +L YE+QL K +L +++ F + P HYR + W G +L Sbjct: 44 GCPMLSLPYEEQLKRKQAKLEELLGKFGPVAPILGMEHPWHYRNKVISSFAWGPGKNLVS 103 Query: 61 IMFDQQTKERMRIDYFMPGSLLIN-----------ALMIEMMATIRLEPLLRAKLFQIDY 109 ++ Q T + ++ + +++ + R L+R L + Sbjct: 104 GIYAQGTHRVVPVEQCLLHREVLDQAVAAVRQAAREFRYQPFDENRRTGLIRHVLCRHSL 163 Query: 110 LTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGR-------ANKTKICL 162 T + + L+ + R A R+++ A Q + ++ KI Sbjct: 164 STG---EVLAVLVTASPVLPGARAFAARVKELCPAIVTLAQNVNPRPGSAVLGDREKILY 220 Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELYCGNG 221 R Y+++ L + +R +SF Q N + + AA + +L+ YCG G Sbjct: 221 GRGYIEDVLC----GVKFRIAPSSFYQINPVQTEVLYSTAISAARLTGKERVLDAYCGVG 276 Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281 L A H V+ VE+ + + A N AN++ N + + F M E Sbjct: 277 TIGLSAAAHAGSVVGVELNRSAAACAVDNAKANNIRNARFRCGDAAAFLDGMAARGE--- 333 Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST-T 338 + +F+DPPR+G + + + +YISCNP++ RDL L+ Sbjct: 334 ---------QLDVVFLDPPRAGSTPVFLDALCRVSPARAVYISCNPETQRRDLEYLAARG 384 Query: 339 HTIERLALFDQFPYTRHMECGVLLVRK 365 E + D FP+T H+E +L R+ Sbjct: 385 WRAESIQGVDMFPHTEHIETVAVLTRR 411 >gi|56418964|ref|YP_146282.1| RNA methyltransferase [Geobacillus kaustophilus HTA426] gi|56378806|dbj|BAD74714.1| RNA methyltransferase [Geobacillus kaustophilus HTA426] Length = 462 Score = 284 bits (728), Expect = 1e-74, Method: Composition-based stats. Identities = 81/391 (20%), Positives = 142/391 (36%), Gaps = 48/391 (12%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQV--------PNLQIFRSEPIHYRMRAEFHIWH 53 L YE QL K D + Q + I P HYR +++F + Sbjct: 88 GCQLQHLAYEAQLEAKRDIVIQALRRHARRLDVDKLDIRPTIGMDNPWHYRNKSQFQVGM 147 Query: 54 DGDDLYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRA 102 + ++ + + + ++ L I + ++R Sbjct: 148 KEGKVLAGLYGLNSHRLIDLSECRVQHPQTTRVTNIVKTILQDLHIPIYNERTRMGVVRT 207 Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIG-------RA 155 + ++ + T +VT + E +R L K +Q I Sbjct: 208 IVARVGFHTGDIQLVLVTATKDIPRKELLIE---EIRRRLPEVKSIVQNINGEKTSLIFG 264 Query: 156 NKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLL 214 ++T++ +Y+ E L L + +F Q N V + + V AA ++ Sbjct: 265 DETEVLAGDEYIQETLG----DLSFELSARAFFQLNPLQTVKLYDEVKKAAALTGTERIV 320 Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274 + YCG G L LAR V ++ ++E A+ N + N V ++ + Sbjct: 321 DAYCGVGTIGLWLARDAKEVRGMDTIPEAIEDAQNNAKKHGFTNTHYVVGKAEYWLPKWV 380 Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDL 332 +E ++ I VDPPR G D A + + ++Y+SCNP SL RDL Sbjct: 381 KE------------GWKPDVIIVDPPRVGCDRALLETILHVRPKTVVYVSCNPSSLARDL 428 Query: 333 SILSTTHTIERLALFDQFPYTRHMECGVLLV 363 L+ + I+ + D FP+T H+E L Sbjct: 429 DALAAQYRIDYIQPVDMFPHTAHVEAVAKLT 459 >gi|315172186|gb|EFU16203.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX1346] Length = 504 Score = 284 bits (727), Expect = 1e-74, Method: Composition-based stats. Identities = 79/379 (20%), Positives = 150/379 (39%), Gaps = 40/379 (10%) Query: 10 YEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 Y QL+ K ++ +M I ++P HYR +A+ + + L F Sbjct: 139 YGAQLSFKTQQVENVMQRVAKLPEVPVLPTIGMNDPWHYRNKAQIPVRKIDNQLQTGFFR 198 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKLFQIDYLTSQ 113 + + + + +++F I+A ++++ +R LR + + Y T + Sbjct: 199 KNSHDLIPMEHFYIQDPEIDAAIVKIRDIMRKYSVKPYNESDNTGNLRHIVVRRGYHTGE 258 Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD----YVDE 169 ++T L + L +A+ +Q + T + + + E Sbjct: 259 MMVVLITRTP--KLFPISKIVPDIL-EAIPEVVSIVQNVNPKR-TNVIFGDETILLHGSE 314 Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLA 228 ++T L + SF Q N M + V + +++ YCG G L LA Sbjct: 315 KITDTIFDLKFEISARSFYQVNPQQTEVMYQKVKEYAALTGNEIVVDAYCGIGTIGLTLA 374 Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288 + +V +E+ + +V+ A N N++ N ++E L + + Sbjct: 375 QDAKQVYGIEVIEEAVKDAENNAKLNNIENATFTAGLAEEL------------LPKLVEN 422 Query: 289 SYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STTHTIERLA 345 + + VDPPR GLD V + I+Y+SCNP +L RD+++L + + + Sbjct: 423 GLQPDVVVVDPPRKGLDGQLVNTLIETQPERIVYVSCNPATLARDIALLTEGGYEAKEIQ 482 Query: 346 LFDQFPYTRHMECGVLLVR 364 D FP T H+E LL + Sbjct: 483 PVDNFPQTTHIESVTLLTK 501 >gi|229548674|ref|ZP_04437399.1| TrmA family tRNA (uracil-5-)-methyltransferase [Enterococcus faecalis ATCC 29200] gi|312953113|ref|ZP_07771962.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX0102] gi|229306190|gb|EEN72186.1| TrmA family tRNA (uracil-5-)-methyltransferase [Enterococcus faecalis ATCC 29200] gi|310628947|gb|EFQ12230.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX0102] gi|315146955|gb|EFT90971.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX4244] gi|315153976|gb|EFT97992.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX0031] gi|315156740|gb|EFU00757.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX0043] Length = 504 Score = 284 bits (727), Expect = 1e-74, Method: Composition-based stats. Identities = 79/379 (20%), Positives = 150/379 (39%), Gaps = 40/379 (10%) Query: 10 YEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 Y QL+ K ++ +M I ++P HYR +A+ + + L F Sbjct: 139 YGAQLSFKTQQVENVMQRVAKLPGVPVLPTIGMNDPWHYRNKAQIPVRKIDNQLQTGFFR 198 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKLFQIDYLTSQ 113 + + + + +++F I+A ++++ +R LR + + Y T + Sbjct: 199 KNSHDLIPMEHFYIQDPEIDAAIVKIRDIMRKYSVKPYNESDNTGNLRHIVVRRGYHTGE 258 Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD----YVDE 169 ++T L + L +A+ +Q + T + + + E Sbjct: 259 MMVVLITRTP--KLFPISKIVPDIL-EAIPEVVSIVQNVNPKR-TNVIFGDETILLHGSE 314 Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLA 228 ++T L + SF Q N M + V + +++ YCG G L LA Sbjct: 315 KITDTIFDLKFEISARSFYQVNPQQTEVMYQKVKEYAALTGNEIVVDAYCGIGTIGLTLA 374 Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288 + +V +E+ + +V+ A N N++ N ++E L + + Sbjct: 375 QDAKQVYGIEVIEEAVKDAENNAKLNNIENATFTAGLAEEL------------LPKLVEN 422 Query: 289 SYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STTHTIERLA 345 + + VDPPR GLD V + I+Y+SCNP +L RD+++L + + + Sbjct: 423 GLQPDVVVVDPPRKGLDGQLVNTLIETQPERIVYVSCNPATLARDIALLTEGGYEAKEIQ 482 Query: 346 LFDQFPYTRHMECGVLLVR 364 D FP T H+E LL + Sbjct: 483 PVDNFPQTTHIESVTLLTK 501 >gi|225026873|ref|ZP_03716065.1| hypothetical protein EUBHAL_01127 [Eubacterium hallii DSM 3353] gi|224955797|gb|EEG37006.1| hypothetical protein EUBHAL_01127 [Eubacterium hallii DSM 3353] Length = 471 Score = 284 bits (727), Expect = 1e-74, Method: Composition-based stats. Identities = 90/398 (22%), Positives = 163/398 (40%), Gaps = 55/398 (13%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMM---LAFQVPNLQI------FRSEPIHYRMRAEFHIW 52 L YE+QL+ K + + F +++ EP HYR +A+F + Sbjct: 91 GCKLQQISYEKQLSFKKSLVEGCLMRIGGFGKEDIEQKIEPVYGMEEPWHYRNKAQFPVG 150 Query: 53 HDG-DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEP-----------LL 100 +D +L + +T + + + + ++ +++ ++ L+ Sbjct: 151 YDKEGNLVAGFYAGRTHSIVANTNCAIQAEVTHPIVEKVLTYMKENKISAYDEKNHSGLV 210 Query: 101 RAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKI 160 R L +I + T + ++ + L +L D L + +I N K Sbjct: 211 RHILTRIGFTTGEIMVCLIVNGTKKQLK-----HIDKLVDDLKTIEGMTSIIVNTNTDKT 265 Query: 161 ----------CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ 210 +DY+++ + + Y+ SF Q N + L + Sbjct: 266 NKILGLRCETVWGQDYIEDYIG----NIKYQIGPLSFYQVNPQQTKVLYSKALEYAELKG 321 Query: 211 GD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269 + + +LYCG G SL LA+ +V VEI K +++ AR N A NH++NV+ ++E Sbjct: 322 QELVWDLYCGIGTISLFLAQKAKQVYGVEIIKEAIDDARRNAALNHMDNVEFFVGKAEEV 381 Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDS 327 A + I VDPPR G D + + A I+Y+SC+P + Sbjct: 382 VPAQYEK-----------TGIHPDVIVVDPPRKGCDAILLNTMLDMAPKRIVYVSCDPAT 430 Query: 328 LCRDLSILS-TTHTIERLALFDQFPYTRHMECGVLLVR 364 L RDL IL +T+E++++ DQF ++ H+E L R Sbjct: 431 LARDLKILCEEKYTLEKVSVVDQFSHSVHVESVCALKR 468 >gi|32266192|ref|NP_860224.1| tRNA (uracil-5-)-methyltransferase [Helicobacter hepaticus ATCC 51449] gi|50401508|sp|Q7U326|TRMA_HELHP RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|32262242|gb|AAP77290.1| tRNA (uracil-5-)-methyltransferase TrmA [Helicobacter hepaticus ATCC 51449] Length = 404 Score = 284 bits (727), Expect = 1e-74, Method: Composition-based stats. Identities = 129/390 (33%), Positives = 203/390 (52%), Gaps = 27/390 (6%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAF------------QVPNLQIFRSEPIHYRMRAEF 49 G I Y QL K + Q +F +++F S +R RAEF Sbjct: 10 GGCTNIQDYSTQLQAKHNLTLQEFQSFLDTKSKNFQYPTNPLAIEVFASPQEGFRARAEF 69 Query: 50 HIWH---DGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQ 106 H + L M R+ I + +M ++ + LL KL+ Sbjct: 70 RFSHVFQNKSGLDFAMNAFGYNHRVPIKKCPILLPTLQDIMPLLLHYLNTYDLLNHKLYA 129 Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDAL-HARKYQIQLIGRANKTKICLDRD 165 + L+S ++ I+TLIYH+ LD W A++++ L + I +IGR+ K L D Sbjct: 130 CNLLSSLQNEIIITLIYHKSLDSHWESLALKIQKELEYTLNTNIHIIGRSKNHKHILSND 189 Query: 166 YVDERLTV-----AGRTLIYRQIENSFTQPNAGINVHMLEWVLAA-----TKGIQGDLLE 215 + E LT+ RT + + E+ F QPN IN MLE++++A T D+LE Sbjct: 190 IICEHLTLFANTPKERTYTFFKQESRFCQPNPFINTQMLEFIVSALSSIYTPQTPCDMLE 249 Query: 216 LYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275 LYCG+GNF++ LA F + A E+ K ++ + N+A N++ N+ R+++ E QA+R+ Sbjct: 250 LYCGSGNFTIPLASIFRHIFATEVVKSAITLLQKNMAKNNIENIIPARLNAFESIQALRK 309 Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGL-DDATVGMVQAYPHILYISCNPDSLCRDLSI 334 ER F RLK+ID+ ++ F + +DPPRSG+ ++ + +Q + I+Y+SCNP +L DL I Sbjct: 310 ERVFFRLKNIDLDAFAFDCVLIDPPRSGVGEEEVLYFLQNFNTIIYVSCNPHTLLNDLRI 369 Query: 335 LSTTHTIERLALFDQFPYTRHMECGVLLVR 364 LS +H + R LFDQFP+T H EC V+L + Sbjct: 370 LSQSHYVMRFGLFDQFPHTYHRECIVILRK 399 >gi|257420988|ref|ZP_05597978.1| RNA methyltransferase [Enterococcus faecalis X98] gi|257162812|gb|EEU92772.1| RNA methyltransferase [Enterococcus faecalis X98] Length = 457 Score = 284 bits (727), Expect = 2e-74, Method: Composition-based stats. Identities = 79/379 (20%), Positives = 150/379 (39%), Gaps = 40/379 (10%) Query: 10 YEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 Y QL+ K ++ +M I ++P HYR +A+ + + L F Sbjct: 92 YGAQLSFKTQQVENVMQRVAKLPGVPVLPTIGMNDPWHYRNKAQIPVRKIDNQLQTGFFR 151 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKLFQIDYLTSQ 113 + + + + +++F I+A ++++ +R LR + + Y T + Sbjct: 152 KNSHDLIPMEHFYIQDPEIDAAIVKIRDIMRKYSVKPYNESDNTGNLRHIVVRRGYHTGE 211 Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD----YVDE 169 ++T L + L +A+ +Q + T + + + E Sbjct: 212 MMVVLITRTP--KLFPISKIVPDIL-EAIPEVVSIVQNVNPKR-TNVIFGDETILLHGSE 267 Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLA 228 ++T L + SF Q N M + V + +++ YCG G L LA Sbjct: 268 KITDTIFDLKFEISARSFYQVNPQQTEVMYQKVKEYAALTGNEIVVDAYCGIGTIGLTLA 327 Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288 + +V +E+ + +V+ A N N++ N ++E L + + Sbjct: 328 QDAKQVYGIEVIEEAVKDAENNAKLNNIENATFTAGLAEEL------------LPKLVEN 375 Query: 289 SYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STTHTIERLA 345 + + VDPPR GLD V + I+Y+SCNP +L RD+++L + + + Sbjct: 376 GLQPDVVVVDPPRKGLDGQLVNTLIETQPERIVYVSCNPATLARDIALLTEGGYEAKEIQ 435 Query: 346 LFDQFPYTRHMECGVLLVR 364 D FP T H+E LL + Sbjct: 436 PVDNFPQTTHIESVTLLTK 454 >gi|329767396|ref|ZP_08258921.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Gemella haemolysans M341] gi|328836085|gb|EGF85776.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Gemella haemolysans M341] Length = 458 Score = 284 bits (727), Expect = 2e-74, Method: Composition-based stats. Identities = 75/386 (19%), Positives = 157/386 (40%), Gaps = 39/386 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL-----QIFRSEPIHYRMRAEFHIWHDGD 56 L+ YE+QL K +++ +M + + + HYR ++ + Sbjct: 87 GANLVHMNYEEQLKFKKKKVQNVMDKALGKDYVEVLETLGMEDGYHYRNKSVIPVQKVNG 146 Query: 57 DLYHIMFDQQTKERMRIDYFMPG-----------SLLINALMIEMMATIRLEPLLRAKLF 105 ++ + ++ + + I+ LI+ L + + +R +F Sbjct: 147 EVKMGYYKPRSHDVVNIEKCFIQYDEHNVLMNKLRSLISELNLSVYDENNHSGAIRHIMF 206 Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDAWRECAI---RLRDALHARKYQIQLIGRANKTKICL 162 + + + S+ IV LD+ + + R+ + + + +KT+ Sbjct: 207 RTNTVKSEIMVGIVVKEKFNKLDEFVEKISKLDDRIVSIMLNINDKKTNVIFGDKTEKLF 266 Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNG 221 +DY+ + L + ++ SF Q N + L + + D +++ YCG G Sbjct: 267 GQDYITDTL----DGIEFKISLRSFYQVNPVQTEVLYSKALELAELKETDTIIDAYCGIG 322 Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281 SL A+ +V +EI + +V AR N N++ N + + S++ + + Sbjct: 323 TISLFAAKKVKKVYGIEIVEAAVLDARENAKNNNIENAEFLLGKSEDVIKKLIS------ 376 Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILST-T 338 + + + VDPPR G +++ + + + I+Y+SCNP +L RD+ I+ + Sbjct: 377 ------QNIKLDAVIVDPPRKGCEESFLRDLASMGIEKIVYVSCNPSTLARDMEIMRSLG 430 Query: 339 HTIERLALFDQFPYTRHMECGVLLVR 364 + + + D FP T H+E LL R Sbjct: 431 YKLGAVQPVDMFPGTYHVEAVTLLER 456 >gi|227523038|ref|ZP_03953087.1| TrmA family tRNA (uracil-5-)-methyltransferase [Lactobacillus hilgardii ATCC 8290] gi|227089856|gb|EEI25168.1| TrmA family tRNA (uracil-5-)-methyltransferase [Lactobacillus hilgardii ATCC 8290] Length = 456 Score = 284 bits (726), Expect = 2e-74, Method: Composition-based stats. Identities = 82/378 (21%), Positives = 150/378 (39%), Gaps = 39/378 (10%) Query: 10 YEQQLAEKVDRLRQMMLAFQV---PNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66 Y QL K ++ ++ + I +P HYR +A+ + L + + Sbjct: 93 YPAQLEFKRHQILNDFNKMKLDVEVSPTIGMDKPYHYRNKAQIPVRMLNGRLQTGFYRKH 152 Query: 67 TKERMRIDYFMPGSLLINALMIEMMATI-------RLEPLLRAKLFQIDYLTSQ-SDQAI 118 + + + I+ F I+ ++ + + E R + I S + + Sbjct: 153 SHDLVPIEDFYIQDPEIDKAVVIVRDILRKFQITPYDEQTHRGVIRNIMVRRGHYSHEMM 212 Query: 119 VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIG-------RANKTKICLDRDYVDERL 171 + LI + E + L K +Q I N+ K+ + + ++L Sbjct: 213 IVLITKSKKLPSEAEIISETVNQLPEVKSIVQNINPKNTNSLMGNQNKVLWGKGTITDQL 272 Query: 172 TVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARH 230 L + NSF Q N + + + + + D +++ YCG G SL LA+ Sbjct: 273 M----GLDFEISPNSFYQVNPIQTEKLYKLAIQKAQLNKDDIVIDAYCGIGTISLSLAKV 328 Query: 231 FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY 290 +V VEI ++E A+ N N ++N K V ++E +L Sbjct: 329 VKKVYGVEIVPEAIEDAKRNAHINKISNCKFVVAKAEE------------QLGKWQKAGL 376 Query: 291 RFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILST-THTIER-LAL 346 + I VDPPR GLD++ + V ++Y+SCNP +L RD + + + I + + Sbjct: 377 KPDVIVVDPPRKGLDESLIESVAEMSLQRLIYVSCNPATLARDAKLFAEHGYQINQPIQP 436 Query: 347 FDQFPYTRHMECGVLLVR 364 DQFP T H+E + + Sbjct: 437 VDQFPQTVHVESVTVFEK 454 >gi|229546565|ref|ZP_04435290.1| TrmA family tRNA (uracil-5-)-methyltransferase [Enterococcus faecalis TX1322] gi|307274683|ref|ZP_07555855.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX2134] gi|307284510|ref|ZP_07564672.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX0860] gi|307296382|ref|ZP_07576206.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX0411] gi|229308310|gb|EEN74297.1| TrmA family tRNA (uracil-5-)-methyltransferase [Enterococcus faecalis TX1322] gi|306496037|gb|EFM65622.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX0411] gi|306503187|gb|EFM72441.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX0860] gi|306508612|gb|EFM77710.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX2134] gi|315029097|gb|EFT41029.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX4000] Length = 504 Score = 284 bits (726), Expect = 2e-74, Method: Composition-based stats. Identities = 79/379 (20%), Positives = 150/379 (39%), Gaps = 40/379 (10%) Query: 10 YEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 Y QL+ K ++ +M I ++P HYR +A+ + + L F Sbjct: 139 YGAQLSFKTQQVENVMQRVAKLPEVPVLPTIGMNDPWHYRNKAQIPVRKIDNQLQTGFFR 198 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKLFQIDYLTSQ 113 + + + + +++F I+A ++++ +R LR + + Y T + Sbjct: 199 KNSHDLIPMEHFYIQDPEIDAAIVKIRDIMRKYSVKPYNESDNTGNLRHIVVRRGYHTGE 258 Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD----YVDE 169 ++T L + L +A+ +Q + T + + + E Sbjct: 259 MMVVLITRTP--KLFPISKIVPDIL-EAIPEVVSIVQNVNPKR-TNVIFGDETILLHGSE 314 Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLA 228 ++T L + SF Q N M + V + +++ YCG G L LA Sbjct: 315 KITDTIFDLKFEISARSFYQVNPQQTEVMYQKVKEYAALTGNEIVVDAYCGIGTIGLTLA 374 Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288 + +V +E+ + +V+ A N N++ N ++E L + + Sbjct: 375 QDAKQVYGIEVIEEAVKDAENNAKLNNIENATFTAGLAEEL------------LPKLVEN 422 Query: 289 SYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STTHTIERLA 345 + + VDPPR GLD V + I+Y+SCNP +L RD+++L + + + Sbjct: 423 GLQPDVVVVDPPRKGLDGQLVNTLIETQPERIVYVSCNPATLARDIALLTEGGYEAKEIQ 482 Query: 346 LFDQFPYTRHMECGVLLVR 364 D FP T H+E LL + Sbjct: 483 PVDNFPQTTHIESVTLLTK 501 >gi|261418755|ref|YP_003252437.1| RNA methyltransferase, TrmA family [Geobacillus sp. Y412MC61] gi|319765571|ref|YP_004131072.1| RNA methyltransferase, TrmA family [Geobacillus sp. Y412MC52] gi|261375212|gb|ACX77955.1| RNA methyltransferase, TrmA family [Geobacillus sp. Y412MC61] gi|317110437|gb|ADU92929.1| RNA methyltransferase, TrmA family [Geobacillus sp. Y412MC52] Length = 467 Score = 284 bits (726), Expect = 2e-74, Method: Composition-based stats. Identities = 78/388 (20%), Positives = 142/388 (36%), Gaps = 42/388 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQV--------PNLQIFRSEPIHYRMRAEFHIWH 53 L YE QL K D + Q + I P HYR +++F + Sbjct: 93 GCQLQHLSYEAQLEAKRDIVIQALRRHARRLDVDKLDIRPTIGMDNPWHYRNKSQFQVGM 152 Query: 54 DGDDLYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRA 102 + ++ + + + ++ L I + ++R Sbjct: 153 KEGKVLAGLYGINSHRLIDLSECRVQHPQTTRVTNIVKTILQDLRIPIYNERTRTGVVRT 212 Query: 103 KLFQIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKT 158 + ++ + T +VT + +LL D R ++ + + + ++T Sbjct: 213 IVVRVGFHTGDIQLVLVTATKDIPRKQLLIDEIRRRLPEVKSIVQNINGEKTSLIFGDET 272 Query: 159 KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELY 217 ++ +Y+ E L L + +F Q N V + + V AA +++ Y Sbjct: 273 EVLAGDEYIQETLG----DLSFELSSRAFFQLNPLQTVKLYDEVKKAAALTGTERIVDAY 328 Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277 CG G L LAR V ++ ++E A+ N + N V ++ Sbjct: 329 CGVGTIGLWLARDAKEVRGMDTIPEAIEDAQNNAKKHGFTNTHYVVGKAE---------- 378 Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSIL 335 L ++ I VDPPR G D A + + ++Y+SCNP SL RDL L Sbjct: 379 --YWLPKWVKGGWKPDVIIVDPPRVGCDRALLETILHVRPKTVVYVSCNPSSLARDLDAL 436 Query: 336 STTHTIERLALFDQFPYTRHMECGVLLV 363 + + ++ + D FP+T H+E L Sbjct: 437 AAQYRVDYIQPVDMFPHTAHVEAVAKLT 464 >gi|299783515|gb|ADJ41513.1| TrmA family tRNA (Uracil-5-)-methyltransferase [Lactobacillus fermentum CECT 5716] Length = 469 Score = 284 bits (726), Expect = 2e-74, Method: Composition-based stats. Identities = 76/378 (20%), Positives = 148/378 (39%), Gaps = 39/378 (10%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ 65 Y QL K ++++++ + NL++ +P YR +A+ + + + Sbjct: 94 YPAQLKFKQRQIQELLEKAHL-NLEVAETLGMDQPFGYRNKAQVPVRMVKGQPTTGFYKR 152 Query: 66 QTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKLFQIDYLTSQS 114 + + + I+ F I+ ++ + +R ++R + + Y + Q Sbjct: 153 GSHDLVPIEDFYIQDPAIDQTVLVVRDLLRKYQVPAYDEETHRRVIRTVMVRRGYYSHQV 212 Query: 115 DQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYV---DERL 171 +VT H E + + + K +Q + I ++++ + + Sbjct: 213 MVVLVTNGEH---FPHVAEITREISERVPGIKSIVQNVNDKRTNVILGTKNHLLWGEPTI 269 Query: 172 TVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNFSLVLARH 230 + + SF Q N + + + A +++ YCG G SL +A+H Sbjct: 270 HDTLLGIDFTISPLSFYQVNPQQTERLYQTAIENAGLDGSKTVIDAYCGIGTISLAVAKH 329 Query: 231 FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY 290 V VEI ++ A+ N A N + N V ++E + E Sbjct: 330 AKHVYGVEIVPAAIADAKQNAANNGIENATFVVGKAEEQFAKWQAE------------GL 377 Query: 291 RFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST-THTIER-LAL 346 + + VDPPR GLD + A ++Y+SCNP +L RDL + + + + + Sbjct: 378 KPDVVIVDPPRKGLDAQLIEATGKMAPQKVIYVSCNPATLVRDLQRFAEQGYHVTKPIQP 437 Query: 347 FDQFPYTRHMECGVLLVR 364 DQFP T H+E +L R Sbjct: 438 VDQFPQTTHVESVTVLER 455 >gi|315170705|gb|EFU14722.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX1342] Length = 468 Score = 284 bits (726), Expect = 2e-74, Method: Composition-based stats. Identities = 79/379 (20%), Positives = 150/379 (39%), Gaps = 40/379 (10%) Query: 10 YEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 Y QL+ K ++ +M I ++P HYR +A+ + + L F Sbjct: 103 YGAQLSFKTQQVENVMQRVAKLPGVPVLPTIGMNDPWHYRNKAQIPVRKIDNQLQTGFFR 162 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKLFQIDYLTSQ 113 + + + + +++F I+A ++++ +R LR + + Y T + Sbjct: 163 KNSHDLIPMEHFYIQDPEIDAAIVKIRDIMRKYSVKPYNESDNTGNLRHIVVRRGYHTGE 222 Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD----YVDE 169 ++T L + L +A+ +Q + T + + + E Sbjct: 223 MMVVLITRTP--KLFPISKIVPDIL-EAIPEVVSIVQNVNPKR-TNVIFGDETILLHGSE 278 Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLA 228 ++T L + SF Q N M + V + +++ YCG G L LA Sbjct: 279 KITDTIFDLKFEISARSFYQVNPQQTEVMYQKVKEYAALTGNEIVVDAYCGIGTIGLTLA 338 Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288 + +V +E+ + +V+ A N N++ N ++E L + + Sbjct: 339 QDAKQVYGIEVIEEAVKDAENNAKLNNIENATFTAGLAEEL------------LPKLVEN 386 Query: 289 SYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STTHTIERLA 345 + + VDPPR GLD V + I+Y+SCNP +L RD+++L + + + Sbjct: 387 GLQPDVVVVDPPRKGLDGQLVNTLIETQPERIVYVSCNPATLARDIALLTEGGYEAKEIQ 446 Query: 346 LFDQFPYTRHMECGVLLVR 364 D FP T H+E LL + Sbjct: 447 PVDNFPQTTHIESVTLLTK 465 >gi|257415298|ref|ZP_05592292.1| RNA methyltransferase [Enterococcus faecalis AR01/DG] gi|257157126|gb|EEU87086.1| RNA methyltransferase [Enterococcus faecalis ARO1/DG] Length = 457 Score = 284 bits (726), Expect = 2e-74, Method: Composition-based stats. Identities = 79/379 (20%), Positives = 150/379 (39%), Gaps = 40/379 (10%) Query: 10 YEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 Y QL+ K ++ +M I ++P HYR +A+ + + L F Sbjct: 92 YGAQLSFKTQQVENVMQRVAKLPEVPVLPTIGMNDPWHYRNKAQIPVRKIDNQLQTGFFR 151 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKLFQIDYLTSQ 113 + + + + +++F I+A ++++ +R LR + + Y T + Sbjct: 152 KNSHDLIPMEHFYIQDPEIDAAIVKIRDIMRKYSVKPYNESDNTGNLRHIVVRRGYHTGE 211 Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD----YVDE 169 ++T L + L +A+ +Q + T + + + E Sbjct: 212 MMVVLITRTP--KLFPISKIVPDIL-EAIPEVVSIVQNVNPKR-TNVIFGDETILLHGSE 267 Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLA 228 ++T L + SF Q N M + V + +++ YCG G L LA Sbjct: 268 KITDTIFDLKFEISARSFYQVNPQQTEVMYQKVKEYAALTGNEIVVDAYCGIGTIGLTLA 327 Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288 + +V +E+ + +V+ A N N++ N ++E L + + Sbjct: 328 QDAKQVYGIEVIEEAVKDAENNAKLNNIENATFTAGLAEEL------------LPKLVEN 375 Query: 289 SYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STTHTIERLA 345 + + VDPPR GLD V + I+Y+SCNP +L RD+++L + + + Sbjct: 376 GLQPDVVVVDPPRKGLDGQLVNTLIETQPERIVYVSCNPATLARDIALLTEGGYEAKEIQ 435 Query: 346 LFDQFPYTRHMECGVLLVR 364 D FP T H+E LL + Sbjct: 436 PVDNFPQTTHIESVTLLTK 454 >gi|227512910|ref|ZP_03942959.1| TrmA family tRNA (uracil-5-)-methyltransferase [Lactobacillus buchneri ATCC 11577] gi|227083910|gb|EEI19222.1| TrmA family tRNA (uracil-5-)-methyltransferase [Lactobacillus buchneri ATCC 11577] Length = 456 Score = 284 bits (726), Expect = 2e-74, Method: Composition-based stats. Identities = 82/378 (21%), Positives = 150/378 (39%), Gaps = 39/378 (10%) Query: 10 YEQQLAEKVDRLRQMMLAFQV---PNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66 Y QL K ++ ++ + I +P HYR +A+ + L + + Sbjct: 93 YPAQLEFKRHQILNDFNKMKLDVEVSPTIGMDKPYHYRNKAQIPVRMLNGRLQTGFYRKH 152 Query: 67 TKERMRIDYFMPGSLLINALMIEMMATI-------RLEPLLRAKLFQIDYLTSQ-SDQAI 118 + + + I+ F I+ ++ + + E R + I S + + Sbjct: 153 SHDLVPIEDFYIQDPEIDKAVVIVRDILRKFQITPYDEQTHRGVIRNIMVRRGHYSHEMM 212 Query: 119 VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIG-------RANKTKICLDRDYVDERL 171 + LI + E + L K +Q I N+ K+ + + ++L Sbjct: 213 IVLITKSKKLPSEAEIISETVNQLPEVKSIVQNINPKNTNSLMGNQNKVLWGKGTITDQL 272 Query: 172 TVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARH 230 L + NSF Q N + + + + + D +++ YCG G SL LA+ Sbjct: 273 M----GLDFEISPNSFYQVNPIQTEKLYKLAIQKAQLNKDDIVIDAYCGIGTISLSLAKV 328 Query: 231 FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY 290 +V VEI ++E A+ N N ++N K V ++E +L Sbjct: 329 VKKVYGVEIVPEAIEDAKRNAHINKISNCKFVVAKAEE------------QLGKWQKAGL 376 Query: 291 RFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILST-THTIER-LAL 346 + I VDPPR GLD++ + V ++Y+SCNP +L RD + + + I + + Sbjct: 377 KPDVIVVDPPRKGLDESLIESVAEMSPQRLIYVSCNPATLARDAKLFAEHGYQINQPIQP 436 Query: 347 FDQFPYTRHMECGVLLVR 364 DQFP T H+E + + Sbjct: 437 VDQFPQTVHVESVTVFEK 454 >gi|237752331|ref|ZP_04582811.1| tRNA (uracil-5-)-methyltransferase [Helicobacter winghamensis ATCC BAA-430] gi|229375820|gb|EEO25911.1| tRNA (uracil-5-)-methyltransferase [Helicobacter winghamensis ATCC BAA-430] Length = 367 Score = 284 bits (726), Expect = 2e-74, Method: Composition-based stats. Identities = 130/354 (36%), Positives = 215/354 (60%), Gaps = 10/354 (2%) Query: 14 LAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKER-MR 72 L K++ ++ + ++F+SE H+R RAE I+HD ++++ M + KER ++ Sbjct: 19 LESKINFASSLL---NFKDFEVFKSEQSHFRARAELGIYHDNREIFYTM--RGEKERFVK 73 Query: 73 IDYFMPGSLLINALMIEMMATIRLEP--LLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDA 130 I I + ++A + + + +LF ++ L +Q++ ++TLIYHR L+++ Sbjct: 74 IVNCQNLLPNIQKTLPVLLAILNSKDFNAFKERLFSLEILANQNNALLLTLIYHRKLEES 133 Query: 131 WRECAIRLRDALHA-RKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQ 189 W + A +L+ L + +++GR+ K+ L++DY+ + L + G+ YR E +F+Q Sbjct: 134 WIQEAKKLQLKLEKFLGFHFEIVGRSRGVKLVLEKDYLMQTLEILGKQFCYRYNEGAFSQ 193 Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249 PNA IN M+ WVL GDLLE+YCG GNF++ L+ F +VLA E++K S+ A ++ Sbjct: 194 PNATINQQMITWVLE-HLKEGGDLLEMYCGCGNFTIPLSFCFGKVLATEVSKTSINALKF 252 Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309 N + N+ VR+S E +A+ +REFNRLK ID++++ FK++FVDPPR GL Sbjct: 253 ACETNQIPNIYSVRLSGAECIEALNGKREFNRLKHIDLNTFNFKSVFVDPPRCGLGLEVC 312 Query: 310 GMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363 ++ + I+YISCNP +L +DL IL TH I+ A FDQF +T+H+ECGV+L Sbjct: 313 AFLKRFKQIIYISCNPVTLAQDLDILKQTHKIKHAAFFDQFAHTKHLECGVILE 366 >gi|227554844|ref|ZP_03984891.1| TrmA family tRNA (uracil-5-)-methyltransferase [Enterococcus faecalis HH22] gi|312900324|ref|ZP_07759635.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX0470] gi|312904253|ref|ZP_07763415.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX0635] gi|227176013|gb|EEI56985.1| TrmA family tRNA (uracil-5-)-methyltransferase [Enterococcus faecalis HH22] gi|310632349|gb|EFQ15632.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX0635] gi|311292512|gb|EFQ71068.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX0470] gi|315031445|gb|EFT43377.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX0017] gi|315166923|gb|EFU10940.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX1341] gi|315575356|gb|EFU87547.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX0309B] gi|315578799|gb|EFU90990.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX0630] gi|315581386|gb|EFU93577.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX0309A] Length = 504 Score = 284 bits (726), Expect = 2e-74, Method: Composition-based stats. Identities = 79/379 (20%), Positives = 150/379 (39%), Gaps = 40/379 (10%) Query: 10 YEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 Y QL+ K ++ +M I ++P HYR +A+ + + L F Sbjct: 139 YGAQLSFKTQQVENVMQRVAKLQEVPVLPTIGMNDPWHYRNKAQIPVRKIDNQLQTGFFR 198 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKLFQIDYLTSQ 113 + + + + +++F I+A ++++ +R LR + + Y T + Sbjct: 199 KNSHDLIPMEHFYIQDPEIDAAIVKIRDIMRKYSVKPYNESDNTGNLRHIVVRRGYHTGE 258 Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD----YVDE 169 ++T L + L +A+ +Q + T + + + E Sbjct: 259 MMVVLITRTP--KLFPISKIVPDIL-EAIPEVVSIVQNVNPKR-TNVIFGDETILLHGSE 314 Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLA 228 ++T L + SF Q N M + V + +++ YCG G L LA Sbjct: 315 KITDTIFDLKFEISARSFYQVNPQQTEVMYQKVKEYAALTGNEIVVDAYCGIGTIGLTLA 374 Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288 + +V +E+ + +V+ A N N++ N ++E L + + Sbjct: 375 QDAKQVYGIEVIEEAVKDAENNAKLNNIENATFTAGLAEEL------------LPKLVEN 422 Query: 289 SYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STTHTIERLA 345 + + VDPPR GLD V + I+Y+SCNP +L RD+++L + + + Sbjct: 423 GLQPDVVVVDPPRKGLDGQLVNTLIETQPERIVYVSCNPATLARDIALLTEGGYEAKEIQ 482 Query: 346 LFDQFPYTRHMECGVLLVR 364 D FP T H+E LL + Sbjct: 483 PVDNFPQTTHIESVTLLTK 501 >gi|255971187|ref|ZP_05421773.1| RNA methyltransferase [Enterococcus faecalis T1] gi|255973811|ref|ZP_05424397.1| RNA methyltransferase [Enterococcus faecalis T2] gi|257083655|ref|ZP_05578016.1| RNA methyltransferase [Enterococcus faecalis Fly1] gi|255962205|gb|EET94681.1| RNA methyltransferase [Enterococcus faecalis T1] gi|255966683|gb|EET97305.1| RNA methyltransferase [Enterococcus faecalis T2] gi|256991685|gb|EEU78987.1| RNA methyltransferase [Enterococcus faecalis Fly1] gi|323479924|gb|ADX79363.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis 62] Length = 457 Score = 284 bits (726), Expect = 2e-74, Method: Composition-based stats. Identities = 79/379 (20%), Positives = 150/379 (39%), Gaps = 40/379 (10%) Query: 10 YEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 Y QL+ K ++ +M I ++P HYR +A+ + + L F Sbjct: 92 YGAQLSFKTQQVENVMQRVAKLPEVPVLPTIGMNDPWHYRNKAQIPVRKIDNQLQTGFFR 151 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKLFQIDYLTSQ 113 + + + + +++F I+A ++++ +R LR + + Y T + Sbjct: 152 KNSHDLIPMEHFYIQDPEIDAAIVKIRDIMRKYSVKPYNESDNTGNLRHIVVRRGYHTGE 211 Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD----YVDE 169 ++T L + L +A+ +Q + T + + + E Sbjct: 212 MMVVLITRTP--KLFPISKIVPDIL-EAIPEVVSIVQNVNPKR-TNVIFGDETILLHGSE 267 Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLA 228 ++T L + SF Q N M + V + +++ YCG G L LA Sbjct: 268 KITDTIFDLKFEISARSFYQVNPQQTEVMYQKVKEYAALTGNEIVVDAYCGIGTIGLTLA 327 Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288 + +V +E+ + +V+ A N N++ N ++E L + + Sbjct: 328 QDAKQVYGIEVIEEAVKDAENNAKLNNIENATFTAGLAEEL------------LPKLVEN 375 Query: 289 SYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STTHTIERLA 345 + + VDPPR GLD V + I+Y+SCNP +L RD+++L + + + Sbjct: 376 GLQPDVVVVDPPRKGLDGQLVNTLIETQPERIVYVSCNPATLARDIALLTEGGYEAKEIQ 435 Query: 346 LFDQFPYTRHMECGVLLVR 364 D FP T H+E LL + Sbjct: 436 PVDNFPQTTHIESVTLLTK 454 >gi|227530251|ref|ZP_03960300.1| TrmA family tRNA (uracil-5-)-methyltransferase [Lactobacillus vaginalis ATCC 49540] gi|227349840|gb|EEJ40131.1| TrmA family tRNA (uracil-5-)-methyltransferase [Lactobacillus vaginalis ATCC 49540] Length = 458 Score = 284 bits (726), Expect = 2e-74, Method: Composition-based stats. Identities = 76/384 (19%), Positives = 155/384 (40%), Gaps = 40/384 (10%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWHDGDDLYH 60 L +YE QL K ++ +++ + +++ +P HYR +A+ + L Sbjct: 88 LGHLKYEAQLKFKQHQIAELLAKAHLDEIEVLPTMGMDKPYHYRNKAQVPVKMVRGQLET 147 Query: 61 IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKLFQIDY 109 + + + + I+ F I+ ++I + +R + ++R + + Y Sbjct: 148 GFYKRGSHTLVPIEDFYIQDPAIDQVIIVVRDLLRKYHVTPYDERTGKGVIRTVMVRRGY 207 Query: 110 LTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD 165 + + +VT L + D ++ + + +K K D Sbjct: 208 YSHEVMVVLVTNTKRLPMAEQIVDGIVAVVPEVKSIVQNINDKKTNRLLGDKNKTLWGAD 267 Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNFS 224 + ++L + + SF Q N + + + A +++ YCG G S Sbjct: 268 EIHDQLL----GIDFAISPLSFYQVNPQQTERLYQTAIDNAGLDGSQTVIDAYCGIGTIS 323 Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284 L +A+H +V VEI +++ A++N N + N K V ++E + + Sbjct: 324 LAVAKHAKQVYGVEIVPAAIDDAKHNAKRNGIKNAKFVVGKAEEQFAKWQED-------- 375 Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST-THTI 341 + + VDPPR GL ++ + A ++Y+SCNP +L RD+ + + + Sbjct: 376 ----GLKPDVVIVDPPRKGLAESLIEATGKMAPQKVIYVSCNPATLIRDIQRFAEQGYHV 431 Query: 342 ER-LALFDQFPYTRHMECGVLLVR 364 + + DQFP T H+E +L R Sbjct: 432 TKPIQPVDQFPQTTHVESVAVLER 455 >gi|307289579|ref|ZP_07569523.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX0109] gi|306499393|gb|EFM68766.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX0109] gi|315164578|gb|EFU08595.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX1302] Length = 504 Score = 284 bits (726), Expect = 2e-74, Method: Composition-based stats. Identities = 79/379 (20%), Positives = 150/379 (39%), Gaps = 40/379 (10%) Query: 10 YEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 Y QL+ K ++ +M I ++P HYR +A+ + + L F Sbjct: 139 YGAQLSFKTQQVENVMQRVAKLPEVPVLPTIGMNDPWHYRNKAQIPVRKIDNQLQTGFFR 198 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKLFQIDYLTSQ 113 + + + + +++F I+A ++++ +R LR + + Y T + Sbjct: 199 KNSHDLIPMEHFYIQDPEIDAAIVKIRDIMRKYSVKPYNESDNTGNLRHIVVRRGYHTGE 258 Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD----YVDE 169 ++T L + L +A+ +Q + T + + + E Sbjct: 259 MMVVLITRTP--KLFPISKIVPDIL-EAIPEVVSIVQNVNPKR-TNVIFGDETILLHGSE 314 Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLA 228 ++T L + SF Q N M + V + +++ YCG G L LA Sbjct: 315 KITDTIFDLKFEISARSFYQVNPQQTEVMYQKVKEYAALTGNEIVVDAYCGIGTIGLTLA 374 Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288 + +V +E+ + +V+ A N N++ N ++E L + + Sbjct: 375 QDAKQVYGIEVIEEAVKDAENNAKLNNIENATFTAGLAEEL------------LPKLVEN 422 Query: 289 SYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STTHTIERLA 345 + + VDPPR GLD V + I+Y+SCNP +L RD+++L + + + Sbjct: 423 GLQPDVVVVDPPRKGLDGQLVNTLIETQPERIVYVSCNPATLARDIALLTEGGYEAKEIQ 482 Query: 346 LFDQFPYTRHMECGVLLVR 364 D FP T H+E LL + Sbjct: 483 PVDNFPQTTHIESVTLLTK 501 >gi|256957402|ref|ZP_05561573.1| RNA methyltransferase [Enterococcus faecalis DS5] gi|256964435|ref|ZP_05568606.1| RNA methyltransferase [Enterococcus faecalis HIP11704] gi|257077602|ref|ZP_05571963.1| RNA methyltransferase [Enterococcus faecalis JH1] gi|294779933|ref|ZP_06745314.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis PC1.1] gi|256947898|gb|EEU64530.1| RNA methyltransferase [Enterococcus faecalis DS5] gi|256954931|gb|EEU71563.1| RNA methyltransferase [Enterococcus faecalis HIP11704] gi|256985632|gb|EEU72934.1| RNA methyltransferase [Enterococcus faecalis JH1] gi|294452982|gb|EFG21403.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis PC1.1] Length = 457 Score = 284 bits (726), Expect = 2e-74, Method: Composition-based stats. Identities = 79/379 (20%), Positives = 150/379 (39%), Gaps = 40/379 (10%) Query: 10 YEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 Y QL+ K ++ +M I ++P HYR +A+ + + L F Sbjct: 92 YGAQLSFKTQQVENVMQRVAKLPEVPVLPTIGMNDPWHYRNKAQIPVRKIDNQLQTGFFR 151 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKLFQIDYLTSQ 113 + + + + +++F I+A ++++ +R LR + + Y T + Sbjct: 152 KNSHDLIPMEHFYIQDPEIDAAIVKIRDIMRKYSVKPYNESDNTGNLRHIVVRRGYHTGE 211 Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD----YVDE 169 ++T L + L +A+ +Q + T + + + E Sbjct: 212 MMVVLITRTP--KLFPISKIVPDIL-EAIPEVVSIVQNVNPKR-TNVIFGDETILLHGSE 267 Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLA 228 ++T L + SF Q N M + V + +++ YCG G L LA Sbjct: 268 KITDTIFDLKFEISARSFYQVNPQQTEVMYQKVKEYAALTGNEIVVDAYCGIGTIGLTLA 327 Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288 + +V +E+ + +V+ A N N++ N ++E L + + Sbjct: 328 QDAKQVYGIEVIEEAVKDAENNAKLNNIENATFTAGLAEEL------------LPKLVEN 375 Query: 289 SYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STTHTIERLA 345 + + VDPPR GLD V + I+Y+SCNP +L RD+++L + + + Sbjct: 376 GLQPDVVVVDPPRKGLDGQLVNTLIETQPERIVYVSCNPATLARDIALLTEGGYEAKEIQ 435 Query: 346 LFDQFPYTRHMECGVLLVR 364 D FP T H+E LL + Sbjct: 436 PVDNFPQTTHIESVTLLTK 454 >gi|196250256|ref|ZP_03148949.1| RNA methyltransferase, TrmA family [Geobacillus sp. G11MC16] gi|196210145|gb|EDY04911.1| RNA methyltransferase, TrmA family [Geobacillus sp. G11MC16] Length = 469 Score = 284 bits (726), Expect = 2e-74, Method: Composition-based stats. Identities = 76/387 (19%), Positives = 143/387 (36%), Gaps = 42/387 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQV--------PNLQIFRSEPIHYRMRAEFHIWH 53 L YE QL K D + Q + I ++P HYR +++F + Sbjct: 93 GCQLQHLSYEAQLEAKRDIVIQALRRHVRRLDVDKIDIRPTIGMNDPWHYRNKSQFQVGV 152 Query: 54 DGDDLYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRA 102 + ++ + + + ++ L I + ++R Sbjct: 153 KKGKVLAGLYGLNSHRLIDLSECRVQHPQTTRVTNIVKTILQDLRIPIYNERTRTGVVRT 212 Query: 103 KLFQIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKT 158 + ++ + T +VT + LL D R ++ + + + ++T Sbjct: 213 IVARVGFHTGDIQIVLVTATKDIPRKELLIDEIRRRLPEVKSIVQNINGEKTSLIFGDET 272 Query: 159 KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGI-QGDLLELY 217 ++ +Y+ E L L + +F Q N V + + V A+ +++ Y Sbjct: 273 EVLAGDEYIQETLG----DLSFELSARAFFQLNPIQTVKLYDEVKKASALTGTERIVDAY 328 Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277 CG G L LAR V ++ ++E A+ N + N V ++ Sbjct: 329 CGVGTIGLWLARDAKEVRGMDTIPEAIEDAKKNAKKHGFENTHYVVGKAE---------- 378 Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLSIL 335 L ++ + VDPPR G D A + + ++Y+SCNP SL RDL L Sbjct: 379 --YWLPKWVKQGWKPDVVIVDPPRVGCDRALLETILRVRPQTVVYVSCNPSSLARDLDTL 436 Query: 336 STTHTIERLALFDQFPYTRHMECGVLL 362 + + ++ + D FP+T H+E L Sbjct: 437 ARAYRVDYIQPVDMFPHTAHVETVAKL 463 >gi|323439838|gb|EGA97554.1| RNA methyltransferase [Staphylococcus aureus O11] gi|323443001|gb|EGB00622.1| RNA methyltransferase [Staphylococcus aureus O46] Length = 453 Score = 283 bits (725), Expect = 2e-74, Method: Composition-based stats. Identities = 74/388 (19%), Positives = 149/388 (38%), Gaps = 40/388 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLA---FQVPNL--QIFRSEPIHYRMRAEFHIWH-DG 55 L YE QL K +++ + F + + ++P YR +++ + Sbjct: 82 GCQLQHLSYEAQLEMKKEQVINLFQRKAHFDNSKINDTVGMTDPWRYRNKSQIPAGKNEQ 141 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKL 104 +++ + Q++ + + ++ + ++ L + + + L+R + Sbjct: 142 NEVIMGFYRQRSHDIIDMESCLIQDSQHQEVMNEVKSILKDLNVSIYQEQLKKGLMRHLV 201 Query: 105 FQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQ----LIGRANKTKI 160 + Y T + VT +A E + + + K I + ++ Sbjct: 202 VRTGYHTDEMMIIFVTNGKKWSQKNAVVEKILDAFPNVTSIKQNINDSHSNVIMGRQSIT 261 Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCG 219 +D + ++LT + ++ + SF Q N+ + + + ++ L+ YCG Sbjct: 262 LYGKDTIIDQLTDS----TFKISDQSFYQINSEQTEKLYNKAIEYAQLTGNEVVLDTYCG 317 Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279 G L +A H V VE+ ++E A+ N N NN V ++E + Sbjct: 318 IGTIGLYMAPHAKHVYGVEVVPSAIEDAQQNATINQCNNTTFVCGKAEEVILQWKA---- 373 Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST 337 + + VDPPR G D+ + + I+YISCNP + RD +L+ Sbjct: 374 --------QGIKPDVVMVDPPRKGCDETFIQTLLTLEPKRIVYISCNPATQQRDALLLAE 425 Query: 338 THTIERLALFDQFPYTRHMECGVLLVRK 365 + +E + D FP T H+E L K Sbjct: 426 KYQLEEVTPVDMFPQTTHVETVALFNLK 453 >gi|187776694|ref|ZP_02993167.1| hypothetical protein CLOSPO_00209 [Clostridium sporogenes ATCC 15579] gi|187775353|gb|EDU39155.1| hypothetical protein CLOSPO_00209 [Clostridium sporogenes ATCC 15579] Length = 459 Score = 283 bits (725), Expect = 2e-74, Method: Composition-based stats. Identities = 78/387 (20%), Positives = 143/387 (36%), Gaps = 37/387 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54 + Y+ QL K R+ + ++ I P YR + + + + Sbjct: 85 GCQVQHYSYKAQLDFKKRRVIDSLKRIGKLDIDKIKIEDTIGMENPYRYRNKIQMPVRFE 144 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGSL-------LINALMIEMMATIRLEPLLRAKLFQI 107 D++ + +T E + +I M + + E + + + I Sbjct: 145 KDEIKIGFYRPRTHEVADVKECFIQDEQADKIIQIIRNWMGKYNISAYNEEIGKGFIRHI 204 Query: 108 DYLTS--QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD 165 + + +V + E + L K IQ + + KT + L Sbjct: 205 MVRKAFKNKELMLVIVTNKEKEIPHKEELIDEVIKELPNMKSIIQNVN-SKKTNVILGEK 263 Query: 166 ----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGN 220 + + +T + SF Q N + + L + + + YCG Sbjct: 264 CITLWGKDTITDYIDKFKFNISPLSFFQVNPIQTEILYKKALEFADLKGEEIVFDAYCGT 323 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G SL L++ +V VEI K +++ A+ N N ++N + S+E Sbjct: 324 GTISLFLSQKAKKVYGVEIIKEAIDNAKDNAKENKIDNAEFFVGKSEEV----------- 372 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST- 337 + D+ + I VDPPR G + + + I+Y+SC+P +L RDL IL+ Sbjct: 373 -IPDLINKGIKADVIVVDPPRKGCEKTLLEAIADIKPKRIVYVSCDPGTLARDLGILNGL 431 Query: 338 THTIERLALFDQFPYTRHMECGVLLVR 364 + + + D FP T H+EC VL+ R Sbjct: 432 GYETKEVQPVDMFPQTSHVECVVLITR 458 >gi|295108003|emb|CBL21956.1| 23S rRNA m(5)U-1939 methyltransferase [Ruminococcus obeum A2-162] Length = 455 Score = 283 bits (725), Expect = 2e-74, Method: Composition-based stats. Identities = 88/393 (22%), Positives = 147/393 (37%), Gaps = 45/393 (11%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDG- 55 L YE+Q A K +LR + I EP HYR +A+F + + Sbjct: 81 GCQLQAVSYEEQKAFKEKKLRGHLERIGGFKELPMEPLIGMDEPYHYRNKAQFPVGRNKE 140 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKL 104 + + +T + G + I + + L+R Sbjct: 141 GRIVTGFYAGRTHAIIENRDCALGIPQNKEVLDRVIAHMEKYNIAPYDEMTGKGLVRHIF 200 Query: 105 FQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALH------ARKYQIQLIGRANKT 158 + + T + +V LI + +E +L + + + +K Sbjct: 201 VRYGFFTG---ELMVCLIINGQDLPHQKELVEKLGEIPGMTSISLNINKKRNNVILGDKV 257 Query: 159 KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELY 217 K ++Y+ +++ + Y SF Q N + L A + + +LY Sbjct: 258 KTIWGKEYITDKIG----DISYEISPLSFFQVNPHQTWKLYSKALEYADLHGEETVWDLY 313 Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277 CG G SL LA+ V VEI ++E AR N N ++NV+ ++E RE Sbjct: 314 CGIGTISLFLAQKAKFVRGVEIVPAAIEDARRNAHLNEIDNVEFFVGKAEEVLP---REY 370 Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSIL 335 E N I VDPPR G D+ + + ++Y+SC+ +L RDL L Sbjct: 371 EKN--------GVYADVIVVDPPRKGCDEMLLKTILKMQPKRVVYVSCDSATLARDLRFL 422 Query: 336 S-TTHTIERLALFDQFPYTRHMECGVLLVRKPS 367 + ++++ DQFP T H+E L R S Sbjct: 423 CDNGYELKKVCGVDQFPQTVHVEVVCCLHRVNS 455 >gi|29375324|ref|NP_814478.1| RNA methyltransferase [Enterococcus faecalis V583] gi|256617615|ref|ZP_05474461.1| RNA methyltransferase [Enterococcus faecalis ATCC 4200] gi|256761497|ref|ZP_05502077.1| RNA methyltransferase [Enterococcus faecalis T3] gi|257089155|ref|ZP_05583516.1| RNA methyltransferase [Enterococcus faecalis CH188] gi|257418339|ref|ZP_05595333.1| RNA methyltransferase trmA [Enterococcus faecalis T11] gi|50401543|sp|Q837V0|Y728_ENTFA RecName: Full=Uncharacterized RNA methyltransferase EF_0728 gi|29342784|gb|AAO80548.1| RNA methyltransferase, TrmA family [Enterococcus faecalis V583] gi|256597142|gb|EEU16318.1| RNA methyltransferase [Enterococcus faecalis ATCC 4200] gi|256682748|gb|EEU22443.1| RNA methyltransferase [Enterococcus faecalis T3] gi|256997967|gb|EEU84487.1| RNA methyltransferase [Enterococcus faecalis CH188] gi|257160167|gb|EEU90127.1| RNA methyltransferase trmA [Enterococcus faecalis T11] Length = 457 Score = 283 bits (725), Expect = 2e-74, Method: Composition-based stats. Identities = 79/379 (20%), Positives = 150/379 (39%), Gaps = 40/379 (10%) Query: 10 YEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 Y QL+ K ++ +M I ++P HYR +A+ + + L F Sbjct: 92 YGAQLSFKTQQVENVMQRVAKLQEVPVLPTIGMNDPWHYRNKAQIPVRKIDNQLQTGFFR 151 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKLFQIDYLTSQ 113 + + + + +++F I+A ++++ +R LR + + Y T + Sbjct: 152 KNSHDLIPMEHFYIQDPEIDAAIVKIRDIMRKYSVKPYNESDNTGNLRHIVVRRGYHTGE 211 Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD----YVDE 169 ++T L + L +A+ +Q + T + + + E Sbjct: 212 MMVVLITRTP--KLFPISKIVPDIL-EAIPEVVSIVQNVNPKR-TNVIFGDETILLHGSE 267 Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLA 228 ++T L + SF Q N M + V + +++ YCG G L LA Sbjct: 268 KITDTIFDLKFEISARSFYQVNPQQTEVMYQKVKEYAALTGNEIVVDAYCGIGTIGLTLA 327 Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288 + +V +E+ + +V+ A N N++ N ++E L + + Sbjct: 328 QDAKQVYGIEVIEEAVKDAENNAKLNNIENATFTAGLAEEL------------LPKLVEN 375 Query: 289 SYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STTHTIERLA 345 + + VDPPR GLD V + I+Y+SCNP +L RD+++L + + + Sbjct: 376 GLQPDVVVVDPPRKGLDGQLVNTLIETQPERIVYVSCNPATLARDIALLTEGGYEAKEIQ 435 Query: 346 LFDQFPYTRHMECGVLLVR 364 D FP T H+E LL + Sbjct: 436 PVDNFPQTTHIESVTLLTK 454 >gi|223044024|ref|ZP_03614064.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus capitis SK14] gi|222442567|gb|EEE48672.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus capitis SK14] Length = 455 Score = 283 bits (725), Expect = 2e-74, Method: Composition-based stats. Identities = 69/391 (17%), Positives = 139/391 (35%), Gaps = 41/391 (10%) Query: 2 SGTLL-IDQYEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFHIWHDG 55 G + Y+ QL K +++ + + +P YR +++ + D Sbjct: 81 GGCQMQHMTYQAQLNMKKEQVVNLFHRKGPFEDIPIQPTLGMEQPWRYRNKSQIPVGKDK 140 Query: 56 D-DLYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAK 103 D + Q++ + + +D + N L + + L+R Sbjct: 141 DNKAIMGFYRQRSHDIIDMDSCLIQDEQHQNIMNYVKHWFNELNMSIYDEKNKRGLMRHL 200 Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAI----RLRDALHARKYQIQLIGRANKTK 159 + + Y T + VT + + I + + ++ Sbjct: 201 VIRTGYHTDEIMVIFVTNGKKFKNANVLVQKLISEFPNITSIKQNINDTHSNVIMGPQSV 260 Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYC 218 +D + + L+ + + + SF Q N+ + + + + + +L+ YC Sbjct: 261 TLYGKDKIVDELS----EVTFNISDQSFYQINSAQTEKLYQKAIDYAQLTGEEIVLDTYC 316 Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278 G G L +A V VE+ +++ A+ N N +NN +++ + Sbjct: 317 GIGTIGLYMAPQAKHVYGVEVVPSAIKDAQENATKNQLNNTTFECGKAEDVILEWKA--- 373 Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILS 336 + + VDPPR G D+ + + I+YISCNP + RD +LS Sbjct: 374 ---------QGIKPDVVMVDPPRKGCDETFIKTLLKLNPKRIVYISCNPSTQQRDAQLLS 424 Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVRKPS 367 + + + D FP T H+E L RK + Sbjct: 425 DNYHLVEITPVDMFPQTTHIETVALFERKEN 455 >gi|317502259|ref|ZP_07960432.1| 23S rRNA (Uracil-5-)-methyltransferase RumA [Lachnospiraceae bacterium 8_1_57FAA] gi|316896374|gb|EFV18472.1| 23S rRNA (Uracil-5-)-methyltransferase RumA [Lachnospiraceae bacterium 8_1_57FAA] Length = 590 Score = 283 bits (725), Expect = 2e-74, Method: Composition-based stats. Identities = 87/407 (21%), Positives = 146/407 (35%), Gaps = 54/407 (13%) Query: 2 SGTLLID-QYEQQLAEKVDRLRQMMLAFQ---------VPNLQIFRSEPIHYRMRAEFHI 51 G + + YE+QL K ++R + I P +YR +A+F Sbjct: 99 GGCQIQEMSYEKQLEFKERKVRGNLERIGGFSSELLECTKEPIIGMETPFYYRNKAQFPF 158 Query: 52 WHDG-DDLYHIMFDQQTKERMRIDYFMPGSLL-----------INALMIEMMATIRLEPL 99 D + + +T + + + G+ + + I L Sbjct: 159 GTDKEGNPVTGFYAGRTHDIIANTNCILGAAVNEHILESILDFMKKYKIRSYDEKTGTGL 218 Query: 100 LRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHAR----------KYQI 149 R L + + T + V W L + L + Sbjct: 219 FRHVLLRYGFTTKEIMVCFVVNKDKADKSGEWFPHQKELVEELAKIDGMTSITASPNTKR 278 Query: 150 QLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGI 209 + + ++ + Y+ + + ++ Y+ SF Q N + L G+ Sbjct: 279 TNVIMGDTFEVLWGQGYITDYIG----SVKYQISPLSFYQVNPVQTEKLYSQALE-YAGL 333 Query: 210 QGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267 +GD + +LYCG G SL LA+ +V VEI P+++ AR N N + N + S+ Sbjct: 334 KGDETVWDLYCGIGTISLFLAQKAKQVYGVEIVPPAIDDARENALLNGIENAQFFVGKSE 393 Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNP 325 E ++ E + I VDPPR G D + + I+Y+SC+ Sbjct: 394 EILPKYYKDYE----EQHGGEKAHADVIVVDPPRKGCDAELLETILKMQPERIVYVSCDS 449 Query: 326 DSLCRDLSILST---------THTIERLALFDQFPYTRHMECGVLLV 363 +L RDL IL + IE+ DQFP T H+E VLL Sbjct: 450 ATLARDLKILCEGAQEDEKTAGYQIEKWRAVDQFPMTTHVETVVLLS 496 >gi|302387197|ref|YP_003823019.1| RNA methyltransferase, TrmA family [Clostridium saccharolyticum WM1] gi|302197825|gb|ADL05396.1| RNA methyltransferase, TrmA family [Clostridium saccharolyticum WM1] Length = 563 Score = 283 bits (725), Expect = 2e-74, Method: Composition-based stats. Identities = 79/390 (20%), Positives = 148/390 (37%), Gaps = 42/390 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHD-GDDLYH 60 LL Y++QL +K L +++ F I P HYR + HD + Sbjct: 190 GCQLLDMPYKKQLEQKQKNLEELLKPFCRVAPIIGMDNPYHYRNKVHAVFDHDRKGNPIS 249 Query: 61 IMFDQQTKERMRIDYFMPGSLLINAL-----------MIEMMATIRLEPLLRAKLFQIDY 109 +++ + + ++ M + + I LLR L + + Sbjct: 250 GVYEANSHRVVPVESCMIEDQKADEIIGTIRGMLKSFKIRTYDEDTGYGLLRHVLIRRGF 309 Query: 110 LTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGR-------ANKTKICL 162 T + +V L+ + + LR+ IQ + +K + Sbjct: 310 TTG---EVMVVLVTSSPVFPSKNNFVKALREKHPEITTIIQNVNDRETSMVLGDKEHVLF 366 Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELYCGNG 221 + Y+++ L +R SF Q N + + + AA + +++ YCG G Sbjct: 367 GKGYIEDILC----GCRFRISSKSFYQVNPVQTEVLYQKAIEAAGLTGKERVIDAYCGIG 422 Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281 +V +++ + V+ VE+ + +V+ A N N + N++ + +F M Sbjct: 423 TIGIVASKYANEVIGVELNRDAVKDAVENAKINGIKNIRFFCNDAGKFMMNMAE------ 476 Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSIL-STT 338 +F+DPPRSG + + V ++Y+SC P++L RDL Sbjct: 477 ------IGEHVDVVFMDPPRSGSTEEFIDSVAKIRPEKVIYVSCGPETLARDLGYFRKKG 530 Query: 339 HTIERLALFDQFPYTRHMECGVLLVRKPSG 368 + + D FP T H+E +L+ R SG Sbjct: 531 YEAKMGWGVDMFPATSHVEAIILMTRSGSG 560 >gi|256854405|ref|ZP_05559769.1| RNA methyltransferase [Enterococcus faecalis T8] gi|256709965|gb|EEU25009.1| RNA methyltransferase [Enterococcus faecalis T8] gi|315151570|gb|EFT95586.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX0012] gi|327534318|gb|AEA93152.1| 23S rRNA (uracil-5-)-methyltransferase [Enterococcus faecalis OG1RF] Length = 468 Score = 283 bits (725), Expect = 2e-74, Method: Composition-based stats. Identities = 79/379 (20%), Positives = 150/379 (39%), Gaps = 40/379 (10%) Query: 10 YEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 Y QL+ K ++ +M I ++P HYR +A+ + + L F Sbjct: 103 YGAQLSFKTQQVENVMQRVAKLPEVPVLPTIGMNDPWHYRNKAQIPVRKIDNQLQTGFFR 162 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKLFQIDYLTSQ 113 + + + + +++F I+A ++++ +R LR + + Y T + Sbjct: 163 KNSHDLIPMEHFYIQDPEIDAAIVKIRDIMRKYSVKPYNESDNTGNLRHIVVRRGYHTGE 222 Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD----YVDE 169 ++T L + L +A+ +Q + T + + + E Sbjct: 223 MMVVLITRTP--KLFPISKIVPDIL-EAIPEVVSIVQNVNPKR-TNVIFGDETILLHGSE 278 Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLA 228 ++T L + SF Q N M + V + +++ YCG G L LA Sbjct: 279 KITDTIFDLKFEISARSFYQVNPQQTEVMYQKVKEYAALTGNEIVVDAYCGIGTIGLTLA 338 Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288 + +V +E+ + +V+ A N N++ N ++E L + + Sbjct: 339 QDAKQVYGIEVIEEAVKDAENNAKLNNIENATFTAGLAEEL------------LPKLVEN 386 Query: 289 SYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STTHTIERLA 345 + + VDPPR GLD V + I+Y+SCNP +L RD+++L + + + Sbjct: 387 GLQPDVVVVDPPRKGLDGQLVNTLIETQPERIVYVSCNPATLARDIALLTEGGYEAKEIQ 446 Query: 346 LFDQFPYTRHMECGVLLVR 364 D FP T H+E LL + Sbjct: 447 PVDNFPQTTHIESVTLLTK 465 >gi|307269782|ref|ZP_07551112.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX4248] gi|307272542|ref|ZP_07553795.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX0855] gi|306510827|gb|EFM79844.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX0855] gi|306513892|gb|EFM82494.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX4248] gi|315036107|gb|EFT48039.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX0027] gi|329576886|gb|EGG58371.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX1467] Length = 468 Score = 283 bits (725), Expect = 3e-74, Method: Composition-based stats. Identities = 79/379 (20%), Positives = 150/379 (39%), Gaps = 40/379 (10%) Query: 10 YEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 Y QL+ K ++ +M I ++P HYR +A+ + + L F Sbjct: 103 YGAQLSFKTQQVENVMQRVAKLPEVPVLPTIGMNDPWHYRNKAQIPVRKIDNQLQTGFFR 162 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKLFQIDYLTSQ 113 + + + + +++F I+A ++++ +R LR + + Y T + Sbjct: 163 KNSHDLIPMEHFYIQDPEIDAAIVKIRDIMRKYSVKPYNESDNTGNLRHIVVRRGYHTGE 222 Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD----YVDE 169 ++T L + L +A+ +Q + T + + + E Sbjct: 223 MMVVLITRTP--KLFPISKIVPDIL-EAIPEVVSIVQNVNPKR-TNVIFGDETILLHGSE 278 Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLA 228 ++T L + SF Q N M + V + +++ YCG G L LA Sbjct: 279 KITDTIFDLKFEISARSFYQVNPQQTEVMYQKVKEYAALTGNEIVVDAYCGIGTIGLTLA 338 Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288 + +V +E+ + +V+ A N N++ N ++E L + + Sbjct: 339 QDAKQVYGIEVIEEAVKDAENNAKLNNIENATFTAGLAEEL------------LPKLVEN 386 Query: 289 SYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STTHTIERLA 345 + + VDPPR GLD V + I+Y+SCNP +L RD+++L + + + Sbjct: 387 GLQPDVVVVDPPRKGLDGQLVNTLIETQPERIVYVSCNPATLARDIALLTEGGYEAKEIQ 446 Query: 346 LFDQFPYTRHMECGVLLVR 364 D FP T H+E LL + Sbjct: 447 PVDNFPQTTHIESVTLLTK 465 >gi|227509977|ref|ZP_03940026.1| TrmA family tRNA (uracil-5-)-methyltransferase [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227190583|gb|EEI70650.1| TrmA family tRNA (uracil-5-)-methyltransferase [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 456 Score = 283 bits (725), Expect = 3e-74, Method: Composition-based stats. Identities = 82/378 (21%), Positives = 152/378 (40%), Gaps = 39/378 (10%) Query: 10 YEQQLAEKVDRLRQMMLAFQV---PNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66 Y QL K +++ ++ + I +P HYR +A+ + L + + Sbjct: 93 YPAQLEFKRHQIQNDFNKMKLDVEVSPTIGMDKPYHYRNKAQIPVRMLNGRLQTGFYRKH 152 Query: 67 TKERMRIDYFMPGSLLINALMIEMMATI-------RLEPLLRAKLFQIDYLTSQ-SDQAI 118 + + + I+ F I+ ++ + + E R + I S + + Sbjct: 153 SHDLVPIEDFYIQDPEIDKAVVIVRDILRKFQITPYDEQTHRGVIRNIMVRRGHYSHEMM 212 Query: 119 VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIG-------RANKTKICLDRDYVDERL 171 + LI + E + L K +Q I N+ K+ + + ++L Sbjct: 213 IVLITKSKKLPSEAEIISETVNQLPEVKSIVQNINPKNTNSLMGNQNKVLWGKGTITDQL 272 Query: 172 TVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARH 230 L + NSF Q N + + + + + D +++ YCG G SL LA+ Sbjct: 273 M----GLDFEISPNSFYQVNPIQTEKLYKLAIQKAQLNKDDIVIDAYCGIGTISLSLAKV 328 Query: 231 FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY 290 +V VEI ++E A+ N N ++N K+V ++E +L Sbjct: 329 VKKVYGVEIVPEAIEDAKRNAHINKISNCKVVVAKAEE------------QLGKWQKAGL 376 Query: 291 RFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILST-THTIER-LAL 346 + I VDPPR GLD++ + V ++Y+SCNP +L RD + + + I + + Sbjct: 377 KPDVIVVDPPRKGLDESLIESVAEMSPQRLIYVSCNPATLARDAKLFAEHGYQINQPIQP 436 Query: 347 FDQFPYTRHMECGVLLVR 364 DQFP T H+E + + Sbjct: 437 VDQFPQTVHVESVTVFEK 454 >gi|148381310|ref|YP_001255851.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum A str. ATCC 3502] gi|153931489|ref|YP_001385686.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum A str. ATCC 19397] gi|153937212|ref|YP_001389092.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum A str. Hall] gi|148290794|emb|CAL84928.1| putative RNA methyltransferase [Clostridium botulinum A str. ATCC 3502] gi|152927533|gb|ABS33033.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum A str. ATCC 19397] gi|152933126|gb|ABS38625.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum A str. Hall] Length = 461 Score = 283 bits (725), Expect = 3e-74, Method: Composition-based stats. Identities = 77/388 (19%), Positives = 148/388 (38%), Gaps = 37/388 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54 + Y+ QL K R+ + ++ I P YR + + + + Sbjct: 85 GCQVQHYSYKAQLEFKKQRVIDSLERIGKLDIDKIKIEDTIGMENPYRYRNKIQMPVRFE 144 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGSL-------LINALMIEMMATIRLEPLLRAKLFQI 107 ++ + +T E + +I M++ + E + + I Sbjct: 145 KGEIKIGFYKSRTHEVADVKECFIQDEQADKIIQIIRNWMVKHNISAYNEETGKGFIRHI 204 Query: 108 DYLTS-QSDQAIVTLIYHRLLDDAWRE-CAIRLRDALHARKYQIQLIGRANKTKICLDRD 165 + ++ + ++ ++ ++ + ++E + K IQ I KT + L Sbjct: 205 MVRKAFKNKELMLVIVTNKEEEIPYKEGLINEVIKEFSNIKSIIQNINT-KKTNVILGEK 263 Query: 166 YVD----ERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGN 220 + + +T + SF Q N + + L + + + YCG Sbjct: 264 CITLWGKDTITDYIDKFKFNISPLSFFQVNPIQTEVLYKKALEFANLKGEEIVFDAYCGT 323 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G SL L++ +V VEI K +++ A+ N N ++N + S+E Sbjct: 324 GTISLFLSQKAKKVYGVEIIKEAIDNAKDNAKENKIDNAEFFVGKSEEV----------- 372 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILST- 337 + D+ + + VDPPR G + + + A I+Y+SC+P +L RDL IL+ Sbjct: 373 -IPDLIDKGIKADVVVVDPPRKGCEKTLLEAIAATKPKRIVYVSCDPGTLARDLGILNGL 431 Query: 338 THTIERLALFDQFPYTRHMECGVLLVRK 365 + + D FP T H+E VLL RK Sbjct: 432 GYETREVQPVDMFPQTSHVETCVLLQRK 459 >gi|138894075|ref|YP_001124528.1| RNA methyltransferase-like protein [Geobacillus thermodenitrificans NG80-2] gi|134265588|gb|ABO65783.1| RNA methyltransferase-like protein [Geobacillus thermodenitrificans NG80-2] Length = 464 Score = 283 bits (725), Expect = 3e-74, Method: Composition-based stats. Identities = 76/387 (19%), Positives = 143/387 (36%), Gaps = 42/387 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQV--------PNLQIFRSEPIHYRMRAEFHIWH 53 L YE QL K D + Q + I ++P HYR +++F + Sbjct: 88 GCQLQHLSYEAQLEAKRDIVIQALRRHVRRLDVDKIDIRPTIGMNDPWHYRNKSQFQVGV 147 Query: 54 DGDDLYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRA 102 + ++ + + + ++ L I + ++R Sbjct: 148 KKGKVLAGLYGLNSHRLIDLSECRVQHPQTTRVTNIVKTILQDLRIPIYNERTRTGVVRT 207 Query: 103 KLFQIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKT 158 + ++ + T +VT + LL D R ++ + + + ++T Sbjct: 208 IVARVGFHTGDIQIVLVTATKDIPRKELLIDEIRRRLPEVKSIVQNINGEKTSLIFGDET 267 Query: 159 KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGI-QGDLLELY 217 ++ +Y+ E L L + +F Q N V + + V A+ +++ Y Sbjct: 268 EVLAGDEYIQETLG----DLSFELSARAFFQLNPIQTVKLYDEVKKASALTGTERIVDAY 323 Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277 CG G L LAR V ++ ++E A+ N + N V ++ Sbjct: 324 CGVGTIGLWLARDAKEVRGMDTIPEAIEDAKKNAKKHGFENTHYVVGKAE---------- 373 Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLSIL 335 L ++ + VDPPR G D A + + ++Y+SCNP SL RDL L Sbjct: 374 --YWLPKWVKQGWKPDVVIVDPPRVGCDRALLETILRVRPQTVVYVSCNPSSLARDLDTL 431 Query: 336 STTHTIERLALFDQFPYTRHMECGVLL 362 + + ++ + D FP+T H+E L Sbjct: 432 ARAYRVDYIQPVDMFPHTAHVETVAKL 458 >gi|300861732|ref|ZP_07107812.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TUSoD Ef11] gi|300848257|gb|EFK76014.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TUSoD Ef11] Length = 457 Score = 283 bits (725), Expect = 3e-74, Method: Composition-based stats. Identities = 79/379 (20%), Positives = 150/379 (39%), Gaps = 40/379 (10%) Query: 10 YEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 Y QL+ K ++ +M I ++P HYR +A+ + + L F Sbjct: 92 YGAQLSFKTQQVENVMQRVAKLPEVPVLPTIGMNDPWHYRNKAQIPVRKIDNQLQTGFFR 151 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKLFQIDYLTSQ 113 + + + + +++F I+A ++++ +R LR + + Y T + Sbjct: 152 KNSHDLIPMEHFYIQDPEIDAAIVKIRDIMRKYSVKPYNESDNSGNLRHIVVRRGYHTGE 211 Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD----YVDE 169 ++T L + L +A+ +Q + T + + + E Sbjct: 212 MMVVLITRTP--KLFPISKIVPDIL-EAIPEVVSIVQNVNPKR-TNVIFGDETILLHGSE 267 Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLA 228 ++T L + SF Q N M + V + +++ YCG G L LA Sbjct: 268 KITDTIFDLKFEISARSFYQVNPQQTEVMYQKVKEYAALTGNEIVVDAYCGIGTIGLNLA 327 Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288 + +V +E+ + +V+ A N N++ N ++E L + + Sbjct: 328 QDAKQVYGIEVIEEAVKDAENNAKLNNIENATFTAGLAEEL------------LPKLVEN 375 Query: 289 SYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STTHTIERLA 345 + + VDPPR GLD V + I+Y+SCNP +L RD+++L + + + Sbjct: 376 GLQPDVVVVDPPRKGLDGQLVNTLIETQPERIVYVSCNPATLARDIALLTEGGYEAKEIQ 435 Query: 346 LFDQFPYTRHMECGVLLVR 364 D FP T H+E LL + Sbjct: 436 PVDNFPQTTHIESVTLLTK 454 >gi|325264644|ref|ZP_08131374.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium sp. D5] gi|324030306|gb|EGB91591.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium sp. D5] Length = 567 Score = 283 bits (724), Expect = 3e-74, Method: Composition-based stats. Identities = 82/396 (20%), Positives = 151/396 (38%), Gaps = 39/396 (9%) Query: 2 SGTLLID-QYEQQLAEKVDRLRQMMLAFQ---------VPNLQIFRSEPIHYRMRAEFHI 51 G + + YE+QL K ++++ + V + P +YR +A+F Sbjct: 78 GGCQIQELSYEKQLEFKENKVKGNLERIGGFAPELLERVTEPIVGMEVPFYYRNKAQFPF 137 Query: 52 WHDG-DDLYHIMFDQQTKERMRIDYF---MPGSLLINALMIEMM--------ATIRLEPL 99 D + + +T + + +P + I L++ M L Sbjct: 138 GTDKEGNPVTGFYAGRTHDIIANTDCALGVPVNKQILELILAFMKKYGITAYDEKTGRGL 197 Query: 100 LRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRD---ALHARKYQIQLIGRAN 156 +R L + ++T + +V E + + + + + Sbjct: 198 IRHALIRFGFVTKEIMVCLVINGKTIPHSAELIEELKEIPGMTSITTSVNRKKTNVIMGD 257 Query: 157 KTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LL 214 I + ++ + + + Y+ SF Q N + L G++G+ + Sbjct: 258 SYDILWGQGFITDYIG----GIKYQISPLSFYQVNPVQTEKLYGLALE-YAGLKGNETVW 312 Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274 +LYCG G SL LA+ +V VEI ++E AR N N + N + +++ Sbjct: 313 DLYCGIGTISLFLAQKAKQVYGVEIVPQAIEDARNNAEINGIGNAEFYTGRAEDVLPEYY 372 Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDL 332 RE + I VDPPR G +++ + + I+Y+SC+ +L RDL Sbjct: 373 REYAM----EHPGEKAHADVIVVDPPRKGCEESLLKTMAEMEPDRIVYVSCDSATLARDL 428 Query: 333 SILS-TTHTIERLALFDQFPYTRHMECGVLLVRKPS 367 LS + + R+ DQFP H+E VLL K + Sbjct: 429 KYLSGEGYELVRVRAVDQFPMGVHVETVVLLSHKKA 464 >gi|170760987|ref|YP_001788698.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum A3 str. Loch Maree] gi|169407976|gb|ACA56387.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum A3 str. Loch Maree] Length = 461 Score = 283 bits (724), Expect = 3e-74, Method: Composition-based stats. Identities = 77/388 (19%), Positives = 152/388 (39%), Gaps = 37/388 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54 + Y+ QL K R+ + ++ I P YR + + + + Sbjct: 85 GCQVQHYSYKAQLDFKKRRVIDSLERIGKLDIDKIEIKDTIGMENPYRYRNKIQMPVRFE 144 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGSL-------LINALMIEMMATIRLEPLLRAKLFQI 107 ++ + +T E + +I M + + E + + I Sbjct: 145 KGEIKIGFYKPRTHEVADVKECFIQDEQADEIIQIIRNWMAKHNISAYNEETGKGFIRHI 204 Query: 108 DYLTS-QSDQAIVTLIYHRLLDDAWRECAI-RLRDALHARKYQIQLIGRANKTKICLDRD 165 + ++++ ++ ++ ++ + ++E I + L K +Q + KT + L Sbjct: 205 MVRKAFKNEELMLVIVTNKENEIPYKEELISEVIKKLDNIKSIVQNVNT-KKTNVILGEK 263 Query: 166 ----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGN 220 + + +T + SF Q N + + L + + + YCG Sbjct: 264 CITLWGKDTITDYIDKFKFNISPLSFFQVNPIQTEVLYKKALEFANLKGEEIVFDAYCGT 323 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G SL L++ +V VEI K +++ A+ N N ++N + S+E Sbjct: 324 GTISLFLSQKAKKVYGVEIIKEAIDNAKDNAKENKIDNAEFFVGKSEEV----------- 372 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILST- 337 + D+ + + VDPPR G + + + + A I+Y+SC+P +L RDL IL+ Sbjct: 373 -IPDLINKGIKADVVVVDPPRKGCEKSLLEAIAATRPKRIVYVSCDPGTLARDLGILNGL 431 Query: 338 THTIERLALFDQFPYTRHMECGVLLVRK 365 + + + D FP T H+E VLL RK Sbjct: 432 GYETKEVQPVDMFPQTSHVETCVLLQRK 459 >gi|269941368|emb|CBI49765.1| putative RNA methyltransferase [Staphylococcus aureus subsp. aureus TW20] Length = 453 Score = 283 bits (724), Expect = 3e-74, Method: Composition-based stats. Identities = 72/388 (18%), Positives = 149/388 (38%), Gaps = 40/388 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLA---FQVPNL--QIFRSEPIHYRMRAEFHIWH-DG 55 L YE QL K +++ + F + + ++P YR +++ + + Sbjct: 82 GCQLQHLSYEAQLEMKKEQVINLFQRKAHFDNSKINDTVGMTDPWRYRNKSQIPVGKNEQ 141 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKL 104 +++ + Q++ + + ++ + ++ L + + + L+R + Sbjct: 142 NEVIMGFYRQRSHDIIDMESCLIQDSQHQEVMNEVKSILKDLNVSIYQEQLKKGLMRHLV 201 Query: 105 FQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQ----LIGRANKTKI 160 + Y T + VT +A E + + + K I + ++ Sbjct: 202 VRTGYHTDEMMIIFVTNGKKWPQKNAVVEKILDAFPNVTSIKQNINDSHSNVIMGRQSIT 261 Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCG 219 +D + ++LT + ++ + SF Q N+ + + + ++ L+ YCG Sbjct: 262 LYGKDTIIDQLTDS----TFKISDQSFYQINSEQTEKLYNKAIEYAQLTGNEVVLDTYCG 317 Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279 G L +A V VE+ ++E A+ N N N+ V ++E + Sbjct: 318 IGTIGLYMAPLAKHVYGVEVVPSAIEDAQQNATINQCNHTTFVCGKAEEVILQWKA---- 373 Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST 337 + + VDPPR G D+ + + I+YISCNP + RD +L+ Sbjct: 374 --------QGIKPDVVMVDPPRKGCDETFIQTLLTLEPKRIVYISCNPATQQRDALLLAE 425 Query: 338 THTIERLALFDQFPYTRHMECGVLLVRK 365 + +E + D FP T H+E L K Sbjct: 426 KYQLEEVTPVDMFPQTTHVETVALFNLK 453 >gi|315145231|gb|EFT89247.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX2141] gi|315161930|gb|EFU05947.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX0645] Length = 468 Score = 283 bits (724), Expect = 3e-74, Method: Composition-based stats. Identities = 79/379 (20%), Positives = 150/379 (39%), Gaps = 40/379 (10%) Query: 10 YEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 Y QL+ K ++ +M I ++P HYR +A+ + + L F Sbjct: 103 YGAQLSFKTQQVENVMQRVAKLPEVPVLPTIGMNDPWHYRNKAQIPVRKIDNQLQTGFFR 162 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKLFQIDYLTSQ 113 + + + + +++F I+A ++++ +R LR + + Y T + Sbjct: 163 KNSHDLIPMEHFYIQDPEIDAAIVKIRDIMRKYSVKPYNESDNSGNLRHIVVRRGYHTGE 222 Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD----YVDE 169 ++T L + L +A+ +Q + T + + + E Sbjct: 223 MMVVLITRTP--KLFPISKIVPDIL-EAIPEVVSIVQNVNPKR-TNVIFGDETILLHGSE 278 Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLA 228 ++T L + SF Q N M + V + +++ YCG G L LA Sbjct: 279 KITDTIFDLKFEISARSFYQVNPQQTEVMYQKVKEYAALTGNEIVVDAYCGIGTIGLNLA 338 Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288 + +V +E+ + +V+ A N N++ N ++E L + + Sbjct: 339 QDAKQVYGIEVIEEAVKDAENNAKLNNIENATFTAGLAEEL------------LPKLVEN 386 Query: 289 SYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STTHTIERLA 345 + + VDPPR GLD V + I+Y+SCNP +L RD+++L + + + Sbjct: 387 GLQPDVVVVDPPRKGLDGQLVNTLIETQPERIVYVSCNPATLARDIALLTEGGYEAKEIQ 446 Query: 346 LFDQFPYTRHMECGVLLVR 364 D FP T H+E LL + Sbjct: 447 PVDNFPQTTHIESVTLLTK 465 >gi|315157726|gb|EFU01743.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX0312] Length = 504 Score = 283 bits (724), Expect = 3e-74, Method: Composition-based stats. Identities = 79/379 (20%), Positives = 149/379 (39%), Gaps = 40/379 (10%) Query: 10 YEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 Y QL+ K ++ +M I ++P HYR +A+ + + L F Sbjct: 139 YGAQLSFKTQQVENVMQRVAKLPEVPVLPTIGMNDPWHYRNKAQIPVRKIDNQLQTGFFR 198 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKLFQIDYLTSQ 113 + + + + +++F I+A ++++ +R LR + + Y T + Sbjct: 199 KNSHDLISMEHFYIQDPEIDAAIVKIRDIMRKYSVKPYNESDNTGNLRHIVVRRGYHTGE 258 Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD----YVDE 169 ++T L + L +A+ +Q + T + + + E Sbjct: 259 MMVVLITRTP--KLFPISKIVPDIL-EAIPEVVSIVQNVNPKR-TNVIFGDETILLHGSE 314 Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLA 228 ++T L + SF Q N M + V + +++ YCG G L LA Sbjct: 315 KITDTIFDLKFEISARSFYQVNPQQTEVMYQKVKEYAALTGNEIVVDAYCGIGTIGLTLA 374 Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288 + +V +E+ + +V+ A N N++ N ++E L + Sbjct: 375 QDAKQVYGIEVIEEAVKDAENNAKLNNIENATFTAGLAEEL------------LPKLVEK 422 Query: 289 SYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STTHTIERLA 345 + + VDPPR GLD V + I+Y+SCNP +L RD+++L + + + Sbjct: 423 GLQPDVVVVDPPRKGLDGQLVNTLIETQPERIVYVSCNPATLARDIALLTEGGYEAKEIQ 482 Query: 346 LFDQFPYTRHMECGVLLVR 364 D FP T H+E LL + Sbjct: 483 PVDNFPQTTHIESVTLLTK 501 >gi|163816191|ref|ZP_02207559.1| hypothetical protein COPEUT_02375 [Coprococcus eutactus ATCC 27759] gi|158448611|gb|EDP25606.1| hypothetical protein COPEUT_02375 [Coprococcus eutactus ATCC 27759] Length = 495 Score = 283 bits (724), Expect = 4e-74, Method: Composition-based stats. Identities = 88/394 (22%), Positives = 156/394 (39%), Gaps = 45/394 (11%) Query: 2 SGTLLID-QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMR--AEFHIWHDGDDL 58 G +D YEQQLAEK + ++ F + I P HYR + A F ++ Sbjct: 117 GGCQYVDMPYEQQLAEKQKYIDDLLSVFGPVDKIIGMENPYHYRNKVTAAFR-RMKSGEI 175 Query: 59 YHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLFQI 107 ++++ T + ++ LI + +++ L+R ++ Sbjct: 176 ISGVYEEGTHNILPVENCYVEDEKAAAIIRTFAGLIKSFKLQIYNEDTGTGLIRHLQIRV 235 Query: 108 DYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGR-------ANKTKI 160 T Q IVT + + + A L A +Q I ++ ++ Sbjct: 236 GRKTGQIMVIIVTA---SPVFPSKKNLAKALVTAHPEITTVVQNINMKDTSMVIGDRNQV 292 Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCG 219 + Y+++ L +R SF Q N + + A + +++ YCG Sbjct: 293 VYGKGYIEDILCGK----RFRISPGSFYQVNPEQTEVLYGKAIKYADLKKKETVIDAYCG 348 Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279 G + + +V+ VE+ + +V AR N+ N + NV I + F Sbjct: 349 IGTIGIAASDRAKKVIGVELNEAAVHDARVNVKMNKIQNVDIYSNDAGRF---------- 398 Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVG--MVQAYPHILYISCNPDSLCRDLSILST 337 + D+ +F+DPPRSG + + + ++YISC P+SL RDL ++ Sbjct: 399 --MVDVADEGDSIDVVFMDPPRSGSTEEFMSSVITLGPKRVVYISCGPESLARDLKYMTK 456 Query: 338 -THTIERLALFDQFPYTRHMECGVLLVRKPSGWH 370 + + R+ D FP TR +E VLL R +G H Sbjct: 457 HGYQVIRMTPVDMFPLTRGVETVVLLTRAGAGQH 490 >gi|153940444|ref|YP_001392724.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum F str. Langeland] gi|152936340|gb|ABS41838.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum F str. Langeland] gi|295320705|gb|ADG01083.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum F str. 230613] Length = 461 Score = 283 bits (724), Expect = 4e-74, Method: Composition-based stats. Identities = 78/388 (20%), Positives = 145/388 (37%), Gaps = 37/388 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54 + Y+ QL K R+ + ++ I P YR + + + + Sbjct: 85 GCQVQHYSYKAQLEFKKQRVIDSLERIGKLDIDKIKIEDTIGMENPYRYRNKIQMPVRFE 144 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGSL-------LINALMIEMMATIRLEPLLRAKLFQI 107 ++ + +T E + +I M++ + E + + I Sbjct: 145 KGEIKIGFYKSRTHEVADVKECFIQDEQADKIIQIIRNWMVKHNISAYNEETGKGFIRHI 204 Query: 108 DYLTSQSDQAIVTLIYHRLLDDA--WRECAIRLRDALHARKYQIQLIGRANKTKICLDRD 165 + ++ ++ +I ++ E + K IQ I KT + L Sbjct: 205 MVRKAFKNKELMLVIVTNKEEEIPYKEELINEVIKEFSNIKSIIQNINT-KKTNVILGEK 263 Query: 166 ----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGN 220 + + +T + SF Q N + + L + + + YCG Sbjct: 264 CITLWGKDIITDYIDKFKFNISPLSFFQVNPIQTEVLYKKALEFANLKGEEIVFDAYCGT 323 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G SL L++ +V VEI K +++ A+ N N ++N + S+E Sbjct: 324 GTISLFLSQKAKKVYGVEIIKEAIDNAKDNAKENKIDNAEFFVGKSEEV----------- 372 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILST- 337 + D+ + + VDPPR G + + + A I+Y+SC+P +L RDL IL+ Sbjct: 373 -IPDLIDKGIKADVVVVDPPRKGCEKTLLEAIAATKPKRIVYVSCDPGTLARDLGILNEL 431 Query: 338 THTIERLALFDQFPYTRHMECGVLLVRK 365 + + + D FP T H+E VLL RK Sbjct: 432 GYETKEVQPVDMFPQTSHVETCVLLQRK 459 >gi|16077869|ref|NP_388683.1| RNA methyltransferase [Bacillus subtilis subsp. subtilis str. 168] gi|221308637|ref|ZP_03590484.1| hypothetical protein Bsubs1_04463 [Bacillus subtilis subsp. subtilis str. 168] gi|221312961|ref|ZP_03594766.1| hypothetical protein BsubsN3_04414 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221317887|ref|ZP_03599181.1| hypothetical protein BsubsJ_04358 [Bacillus subtilis subsp. subtilis str. JH642] gi|221322160|ref|ZP_03603454.1| hypothetical protein BsubsS_04454 [Bacillus subtilis subsp. subtilis str. SMY] gi|321314530|ref|YP_004206817.1| putative RNA methyltransferase [Bacillus subtilis BSn5] gi|50401310|sp|O31545|YFJO_BACSU RecName: Full=Uncharacterized RNA methyltransferase yfjO gi|2633126|emb|CAB12631.1| putative RNA methyltransferase [Bacillus subtilis subsp. subtilis str. 168] gi|2780399|dbj|BAA24300.1| YfjO [Bacillus subtilis] gi|291483243|dbj|BAI84318.1| hypothetical protein BSNT_01338 [Bacillus subtilis subsp. natto BEST195] gi|320020804|gb|ADV95790.1| putative RNA methyltransferase [Bacillus subtilis BSn5] Length = 466 Score = 283 bits (723), Expect = 4e-74, Method: Composition-based stats. Identities = 81/395 (20%), Positives = 155/395 (39%), Gaps = 48/395 (12%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMML---AFQVPNLQI----FRSEPIHYRMRAEFHIWH- 53 L Y QQL EK D + Q + F+V N++I P +YR +++F I Sbjct: 90 GCQLQHLAYSQQLREKRDIVIQSLERHTKFKVENMEIKETIGMDNPWNYRNKSQFQIGRS 149 Query: 54 DGDDLYHIMFDQQTKERMRIDYFMPGSLLIN-----------ALMIEMMATIRLEPLLRA 102 + ++ + + + I + N + + + + +R Sbjct: 150 QSGSIIAGLYGLDSHDIVPIKDCIVQHPATNKTTGIVRRILEDFNVSVYNERKRKGDVRT 209 Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIG-------RA 155 + ++ + ++ + V L+ + E ++ L K IQ + Sbjct: 210 IVTRVGF---ETGEVQVVLVTAKETLPHKEEIVKAIQKRLPEVKSIIQNVNGAKTSVIFG 266 Query: 156 NKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLL 214 KTK + + E L + + +F Q N V + + V AA + ++ Sbjct: 267 EKTKQLAGKTVIQEVLG----DVSFELSARAFFQLNPEQTVKLYDEVKKAAQLTGKEKVV 322 Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274 + YCG G + +A V +++ K S++ A+ N + + N V +++ + Sbjct: 323 DAYCGVGTIGMWVADGAKEVRGMDVIKESIDDAKKNAKKHGMANATYVTGTAEHWLPKWT 382 Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDL 332 +E +R + VDPPR+G D + ++ +Y+SCNP +L +DL Sbjct: 383 KE------------GFRPDVVIVDPPRTGCDSTFLDTIKKVKPKRFVYVSCNPSTLAKDL 430 Query: 333 SILSTTHTIERLALFDQFPYTRHMECGVLLVRKPS 367 LS + ++ + D FP T H+E LV K S Sbjct: 431 QTLSKDYRVDYIQPVDMFPQTAHVEAVARLVLKSS 465 >gi|315641196|ref|ZP_07896273.1| 23S rRNA (uracil-5-)-methyltransferase [Enterococcus italicus DSM 15952] gi|315482963|gb|EFU73482.1| 23S rRNA (uracil-5-)-methyltransferase [Enterococcus italicus DSM 15952] Length = 458 Score = 283 bits (723), Expect = 4e-74, Method: Composition-based stats. Identities = 79/394 (20%), Positives = 148/394 (37%), Gaps = 49/394 (12%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54 L Y +QL K D L+Q + F+ Q I +P HYR +A+F + + Sbjct: 84 GCQLQHLSYNKQLVFKRDLLKQALQKFKPKGYQEFDLRPTIGMDDPWHYRNKAQFQLRYS 143 Query: 55 GDDLY--HIMFDQQTKERMRIDYFMPG-----------SLLINALMIEMMATIRLEPLLR 101 ++ + E + ID + L+N + + + + R Sbjct: 144 NKRQRIEAGLYRPNSHELVPIDDCLVQEPQTQQVLNTTVQLLNKYNVPVYDEKKNSGIFR 203 Query: 102 AKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIG-------R 154 + +I +T++ +T + + L L +Q I Sbjct: 204 TLMVRIGVITNELQLVFITNSEK---FPSKQALIRELTTRLPNVVSIMQNIQNKKTSLVM 260 Query: 155 ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-L 213 KT +D ++E++ + + +F Q N + + + A D + Sbjct: 261 GEKTVNLWGKDTIEEQI----NEVTFDLSARAFFQLNPYQTSVLYQEAIRALDYQSSDTV 316 Query: 214 LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273 ++ YCG G L +A +V ++ ++ A+ N + N ++++ Sbjct: 317 IDAYCGVGTIGLSVAPFVKQVRGMDTISQAITDAKKNAQRKGLTNTHYETGTAEDLIPKW 376 Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRD 331 ++ Y I VDPPR+GLDD + + +P ++Y+SCN +L RD Sbjct: 377 VKD------------GYHADAIVVDPPRTGLDDKLLQTLLRHPSKRLVYVSCNVSTLARD 424 Query: 332 LSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 L L+ + ++ L D FP T E V L +K Sbjct: 425 LVQLAKVYRVDYLQSVDMFPQTARCEVVVKLTKK 458 >gi|290968456|ref|ZP_06559995.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Megasphaera genomosp. type_1 str. 28L] gi|290781452|gb|EFD94041.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Megasphaera genomosp. type_1 str. 28L] Length = 460 Score = 283 bits (723), Expect = 4e-74, Method: Composition-based stats. Identities = 79/387 (20%), Positives = 150/387 (38%), Gaps = 41/387 (10%) Query: 3 GTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGDD 57 L Y+ +L EK +++ + + + P +YR + +F + D + Sbjct: 88 CQLQHFSYDGELQEKQRQVQDALTRIGHITNVPVLPTLGAATPWNYRNKMQFPVGEDKKN 147 Query: 58 LY-HIMFDQQTKERMRIDYFMPGSLLINAL-----------MIEMMATIRLEPLLRAKLF 105 F T + ++ + N + I + ++R + Sbjct: 148 TLSIGCFAAATHNVINVENCVIQKEENNQIVRIVRQWMKDFKIPAYDEDKCTGMIRHIMG 207 Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD 165 ++ T + IVT ++ RLR + IQ I + T + L R Sbjct: 208 RVGVKTGEIMVCIVTACECIP---HIKDLIRRLRQEIPGLTAVIQNINTGH-TNVILGRK 263 Query: 166 ----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGN 220 Y + + A L + SF Q N+ + E + +++ ++YCG Sbjct: 264 TRTLYGQDTIHDAIGNLRFHISAQSFFQVNSEQAQRLYEKAMEFADLKGNEIVADVYCGT 323 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G +L LA+ +V +EI +++ A N NH+ N + + + Sbjct: 324 GTITLFLAQKAKQVYGIEIVPSAIKDAIRNARDNHIKNAEFILGDA------------VY 371 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST- 337 +L ++ + R + I +DPPR+G + + + ++Y+SCNP +L RDL+ L T Sbjct: 372 KLPELIKNGVRPQVIVLDPPRAGCGEPVLRAIGRSQPERVVYVSCNPATLARDLACLQTY 431 Query: 338 THTIERLALFDQFPYTRHMECGVLLVR 364 + ER+ D F T H+E L+ R Sbjct: 432 GYKTERVQPVDMFSRTHHVESVALVSR 458 >gi|260899154|ref|ZP_05907549.1| tRNA (uracil-5-)-methyltransferase [Vibrio parahaemolyticus AQ4037] gi|308107497|gb|EFO45037.1| tRNA (uracil-5-)-methyltransferase [Vibrio parahaemolyticus AQ4037] Length = 229 Score = 283 bits (723), Expect = 4e-74, Method: Composition-based stats. Identities = 140/228 (61%), Positives = 174/228 (76%), Gaps = 2/228 (0%) Query: 140 DALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML 199 L+ + + +IGRA K KI LDRDYV E+L V G++ IY+Q+ENSFTQPN + ML Sbjct: 1 QRLNDEGFNLNIIGRARKMKIILDRDYVIEKLDVNGQSYIYQQVENSFTQPNGKVAEKML 60 Query: 200 EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259 EW + T+ GDLLELYCGNGNFSL LA++FDRVLA E+AKPSVE+A+YNIAAN ++NV Sbjct: 61 EWAVDCTQESTGDLLELYCGNGNFSLALAQNFDRVLATELAKPSVESAQYNIAANKIDNV 120 Query: 260 KIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH 317 +I+RMS++EFT+AM +REF RLKD +D+ SY TIFVDPPR+G+D T MVQ Y Sbjct: 121 QIIRMSAEEFTEAMEGKREFRRLKDNGVDLKSYNCNTIFVDPPRAGMDVDTCKMVQGYER 180 Query: 318 ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 I+YISCNP++L +L ILS TH + R ALFDQFPYT HME GVLL RK Sbjct: 181 IMYISCNPETLKENLDILSETHNVTRFALFDQFPYTHHMEAGVLLERK 228 >gi|157691537|ref|YP_001485999.1| tRNA (uracil-5-)-methyltransferase [Bacillus pumilus SAFR-032] gi|157680295|gb|ABV61439.1| tRNA (uracil-5-)-methyltransferase [Bacillus pumilus SAFR-032] Length = 461 Score = 283 bits (723), Expect = 5e-74, Method: Composition-based stats. Identities = 79/390 (20%), Positives = 157/390 (40%), Gaps = 42/390 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54 L YEQQL EK D + Q M +++ I +P HYR +++F + Sbjct: 88 GCQLQHLAYEQQLREKRDIVIQSMERHTKLSVEKLDIRPTIGMEDPWHYRNKSQFQVGRS 147 Query: 55 -GDDLYHIMFDQQTKERMRIDYFMPGSLLINA-----------LMIEMMATIRLEPLLRA 102 D+ ++ + + + I + N + + + +R+ Sbjct: 148 HSGDIIAGLYGLNSHKLVPIKECIVQHPKTNKTTGVVRKILEKFGVSVYNERTRKGDVRS 207 Query: 103 KLFQIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKT 158 + ++ + T + +VT + + DA ++ + +H + + +KT Sbjct: 208 IVVRVGFETGEVQVVLVTSKPEFPKKKEIADAIQKRLPEVTSIMHNINGEKTSVIFGHKT 267 Query: 159 KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELY 217 + E L + + +F Q N + + + AA + +++ Y Sbjct: 268 SHLAGNMVIQEFLG----DVSFELSARAFFQLNPKQTLKLYDEAKKAAKLTGKEKVVDAY 323 Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277 CG G + L+ V +++ K S++ A+ N + + N V +++ + +E Sbjct: 324 CGVGTIGMWLSDGAKEVRGMDVIKESIDDAKKNAKKHGMKNATYVTGTAEHWLPKWVKE- 382 Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSIL 335 +R I VDPPR+G + + V+ ++Y+SCNP +L +DL + Sbjct: 383 -----------GFRPDVIVVDPPRTGCERTFLDTVKQVKPKRLVYVSCNPSTLAKDLEYI 431 Query: 336 STTHTIERLALFDQFPYTRHMECGVLLVRK 365 S + IE + D FP+T H+E V LV+K Sbjct: 432 SKDYKIEYMQPVDMFPHTSHVETVVSLVKK 461 >gi|229824364|ref|ZP_04450433.1| hypothetical protein GCWU000282_01685 [Catonella morbi ATCC 51271] gi|229786164|gb|EEP22278.1| hypothetical protein GCWU000282_01685 [Catonella morbi ATCC 51271] Length = 499 Score = 283 bits (723), Expect = 5e-74, Method: Composition-based stats. Identities = 87/387 (22%), Positives = 151/387 (39%), Gaps = 41/387 (10%) Query: 4 TLLIDQYEQQLAEKVDRLRQMMLAFQ--VPNLQI----FRSEPIHYRMRAEFHIWHDGDD 57 TL Y QL K ++Q+ +L++ P YR +A+ + Sbjct: 128 TLQHMAYPAQLKAKQALVKQVFSRLGKFPESLEVRPTYGMDHPWQYRNKAQIPVRTVKGQ 187 Query: 58 LYHIMFDQQTKERMRIDYFMPGSLLINALMI-------EMMATIRLEPLLRAKLFQIDYL 110 L F + + + + ++ F I+ ++ ++ + E + ++ I Sbjct: 188 LETGFFRKNSHQLVPVENFHIQDPAIDQAILVTRDILRQLGYSAYDEESRKGQIRHIIVK 247 Query: 111 TSQ-SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKY-------QIQLIGRANKTKICL 162 S Q ++ L+ + A + L A+ Q + ++ Sbjct: 248 RGHYSGQVMLILVVNGKGLPAEDKLIKALTKAIPNLVSLVLNSHTQANNVIMGPTNRLLW 307 Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELYCGNG 221 + +++ L + +SF Q N + + L AA +L+ YCG G Sbjct: 308 GQPVYQDQML----GLDFSISPHSFYQVNTPQAEALYRYALEAADLSGSETVLDAYCGIG 363 Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281 SL LAR +V A+EI +++ AR N AN ++NV ++E A + E Sbjct: 364 TISLALARQAGQVYAMEIVPEAIDMARANAEANGLSNVTFQAGKAEEVLPAWQAE----- 418 Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILS-TT 338 F VDPPR GLD V + A I+Y+SCNP + RD +L+ Sbjct: 419 -------GIHFDVAVVDPPRKGLDPEFVKTLIELAPDKIVYVSCNPATCARDCQLLAQAG 471 Query: 339 HTIERLALFDQFPYTRHMECGVLLVRK 365 + ++ + D FP T H+E LL RK Sbjct: 472 YELQWVQPVDLFPKTAHIEVVGLLERK 498 >gi|315638470|ref|ZP_07893647.1| tRNA (uracil-5-)-methyltransferase [Campylobacter upsaliensis JV21] gi|315481461|gb|EFU72088.1| tRNA (uracil-5-)-methyltransferase [Campylobacter upsaliensis JV21] Length = 354 Score = 282 bits (722), Expect = 5e-74, Method: Composition-based stats. Identities = 127/352 (36%), Positives = 203/352 (57%), Gaps = 11/352 (3%) Query: 15 AEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWH-DGDDLYHIMFDQQTKERMRI 73 +K+ +++ F ++F S H+R R E +H + ++++ MFD + K + Sbjct: 6 EQKILEAKELFKPFYKGEFELFSSPTSHFRTRVELSFFHSENGEIFYAMFDGRKKYIVEN 65 Query: 74 DYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRE 133 F+ I LM +++ + + L+ KLF +++L S+ + + VTL+YH+ + Sbjct: 66 LDFV--DEKICLLMPKLLKALNDDNTLKNKLFGVEFLASKKELS-VTLLYHKDISTLKEN 122 Query: 134 CAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAG 193 A AR + LI R+ K+ ++ + + L + G + Y + F QPN Sbjct: 123 LANL------ARNLNLNLIARSKGKKLVFGKENLRQVLDIKGEAIHYEFDNDCFIQPNTY 176 Query: 194 INVHMLEWVLAAT-KGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIA 252 IN M+EWVL G + DLLELYCG GNF+L LA F ++LA E++K ++ A N Sbjct: 177 INEKMIEWVLKQISTGEKNDLLELYCGYGNFTLALASSFKQILATELSKKNIAYALKNCT 236 Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312 N+ N+ R+SS+E ++A+++EREF RLKDID+ S+ F I +DPPR+GL+++ + + Sbjct: 237 LNNATNIHFARLSSEELSKALKKEREFFRLKDIDLDSFHFSHILLDPPRAGLEESVIELA 296 Query: 313 QAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 Q Y HI+YISCNP SL +L+ L+ THTI ALFDQF T H+E GV+L + Sbjct: 297 QNYHHIIYISCNPTSLKENLTKLTKTHTITNFALFDQFALTPHLESGVILKK 348 >gi|297531277|ref|YP_003672552.1| RNA methyltransferase, TrmA family [Geobacillus sp. C56-T3] gi|297254529|gb|ADI27975.1| RNA methyltransferase, TrmA family [Geobacillus sp. C56-T3] Length = 467 Score = 282 bits (722), Expect = 5e-74, Method: Composition-based stats. Identities = 78/386 (20%), Positives = 142/386 (36%), Gaps = 42/386 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQV--------PNLQIFRSEPIHYRMRAEFHIWH 53 L YE QL K D + Q + I P HYR +++F + Sbjct: 93 GCQLQHLSYEAQLEAKRDIVIQALRRHARRLDVDKLDIRPTIGMDNPWHYRNKSQFQVGM 152 Query: 54 DGDDLYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRA 102 + ++ + + + ++ L I + ++R Sbjct: 153 KEGKVLAGLYGINSHRLIDLSECRVQHPQTTRVTNIVKTILQDLRIPIYNERTRTGVVRT 212 Query: 103 KLFQIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKT 158 + ++ + T +VT + +LL D R ++ + + + ++T Sbjct: 213 IVVRVGFHTGDIQLVLVTATKDIPRKQLLIDEIRRRLPEVKSIVQNINGEKTSLIFGDET 272 Query: 159 KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELY 217 ++ +Y+ E L L + +F Q N V + + V AA +++ Y Sbjct: 273 EVLAGDEYIQETLG----DLSFELSSRAFFQLNPLQTVKLYDEVKKAAALTGTERIVDAY 328 Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277 CG G L LAR V ++ ++E A+ N + N V ++ Sbjct: 329 CGVGTIGLWLARDAKEVRGMDTIPEAIEDAQNNAKKHGFTNTHYVVGKAE---------- 378 Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSIL 335 L ++ I VDPPR G D A + + ++Y+SCNP SL RDL L Sbjct: 379 --YWLPKWVKGGWKPDVIIVDPPRVGCDRALLETILHVRPKTVVYVSCNPSSLARDLDAL 436 Query: 336 STTHTIERLALFDQFPYTRHMECGVL 361 + + ++ + D FP+T H+EC Sbjct: 437 AAQYRVDYIQPVDMFPHTAHVECVAK 462 >gi|258646651|ref|ZP_05734120.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Dialister invisus DSM 15470] gi|260404073|gb|EEW97620.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Dialister invisus DSM 15470] Length = 468 Score = 282 bits (722), Expect = 5e-74, Method: Composition-based stats. Identities = 77/382 (20%), Positives = 136/382 (35%), Gaps = 31/382 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAF-----QVPNLQIFRSEPIHYRMRAEFHIWHDGD 56 L YE QL K R++ ++ ++ + P YR + Sbjct: 96 GCQLSHLTYEGQLDMKYRRVKDVIERIAGESGKLVRPVLPAVHPFAYRNKMAVPAGLVKG 155 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMI-------EMMATIRLEPLLRAKLFQIDY 109 + + Q + + + + N L+ + ++ E + L + Sbjct: 156 EAALGCYRQGSHDIIPVSSCAIQKEENNRLLQFARRFIEKYGISVYDEKTRKGSLRHVMG 215 Query: 110 LTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD---Y 166 + +V L+ + ++ L I I + + Sbjct: 216 RVGDDGKVMVVLVTASETLPEEKRWIEGIQKELPEVISLWHNIQPKPGNTILGAKIRHLW 275 Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSL 225 E LT + L + SF Q + + E L G+ +++ YCG G SL Sbjct: 276 GRETLTASLCGLQFEVSPYSFFQVHKEQAEILYEKALEYADLKGGETVIDAYCGTGTISL 335 Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285 LA+ RV+ +EI KP++E A+ N NH+ N + + + + R Sbjct: 336 CLAKKAKRVIGIEIVKPAIEDAKKNAKKNHMENTEFYAADAGKLMPQLYR---------- 385 Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSIL-STTHTIE 342 I +DP R+G + + I+Y+SCNP + RD IL S + I+ Sbjct: 386 --QGLVPDVIVMDPVRAGCSEEVLKAAAGMNPKRIVYVSCNPATFARDAKILKSEGYEIK 443 Query: 343 RLALFDQFPYTRHMECGVLLVR 364 + D FP T H+E VL+ R Sbjct: 444 EVQPVDMFPQTMHVETVVLMSR 465 >gi|289449975|ref|YP_003474465.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289184522|gb|ADC90947.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 458 Score = 282 bits (722), Expect = 6e-74, Method: Composition-based stats. Identities = 84/387 (21%), Positives = 144/387 (37%), Gaps = 44/387 (11%) Query: 4 TLLIDQYEQQLAEKVDRLRQMMLAFQVPNL-------QIFRSEPIHYRMRAEFHIWHDGD 56 L Y+ QL K D++R+ + F P L + EP HYR +A I Sbjct: 88 ALAHLNYQYQLTFKQDQVRRTLGKF--PELRDISVRDTLGMEEPWHYRNKALVPIAGKIG 145 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATI-------RLEPLLRAKLFQIDY 109 L + Q + + + + + +I+ + ++ I E R L I Sbjct: 146 HLCSGFYRQNSHKFIPVADYKIQLPIIDRTIQTVLQVINRHGWTAYDEKTGRGLLRHIGV 205 Query: 110 LTS-QSDQAIVTLIYHRLLDDAWRECAIRLRDALHA-------RKYQIQLIGRANKTKIC 161 + + +V + + + + + A+ + Q + +++++ Sbjct: 206 RVGFHTGEIMVIFVVNGAILPEEIDVTQEIVSAIPNLTGLIMNKNCQATNVILGHESRVL 265 Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220 D E + L + SF Q N + + VL A +++ YCG Sbjct: 266 YGCDCYRETIG----GLTFMVSWQSFLQVNTLQAEKLYQTVLEVAGLSGNETVIDAYCGI 321 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G SL LAR V VEI ++E A N N ++N V ++ E Sbjct: 322 GTISLYLARRAKFVYGVEIVPAAIEMAERNAEVNGIHNASFVCGKAETVIPQWVAE---- 377 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLS-ILST 337 + VDPPR GL + + I+Y+SCNP +L RD++ +L Sbjct: 378 --------GLAPDVVVVDPPRKGLATEVIEALSTVRPAKIVYVSCNPATLARDMALLLKA 429 Query: 338 THTIERLALFDQFPYTRHMECGVLLVR 364 + + D FP T H+E VL+ R Sbjct: 430 GYHAGDVQPVDMFPQTPHVESVVLMSR 456 >gi|266619611|ref|ZP_06112546.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium hathewayi DSM 13479] gi|288868833|gb|EFD01132.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium hathewayi DSM 13479] Length = 458 Score = 282 bits (722), Expect = 6e-74, Method: Composition-based stats. Identities = 89/389 (22%), Positives = 146/389 (37%), Gaps = 41/389 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ----VPNLQI-FRSEPIHYRMRAEFHIWHDGD 56 L YE+QL K ++ + VP L + EP YR +A+F D D Sbjct: 84 GCQLQAMDYEEQLKYKERKIYNNIKRIGGFDEVPMLPVMGMEEPWRYRNKAQFPWGTDKD 143 Query: 57 -DLYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKL 104 + F +T + + + G + I L+R L Sbjct: 144 GKIITGFFAGRTHAIIENEDCLLGIEENREILKIIKNHLERYHIRPYDEASHSGLIRHTL 203 Query: 105 FQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR 164 + + T + V + E +++ I + +T + L Sbjct: 204 IRKGFHTGELMVCQVINGKSLPHQEELTEQLLKVPGM-----TSISVNINREQTNVILGN 258 Query: 165 D----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCG 219 Y +T + YR SF Q N + L G+ + +LYCG Sbjct: 259 QVINLYGPGYITDYIGGVKYRISPLSFYQVNPVQTEKLYSTALEYAGLTGGETVWDLYCG 318 Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279 G SL LA+ +V VEI +++ AR N N + NV+ ++E RE E Sbjct: 319 IGTISLFLAQKAKKVYGVEIVPQAIDDARENARINGMENVEFFVGKAEEVLP---REYEK 375 Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST 337 N++ I VDPPR G D+ + + ++Y+SC+ +L RD+ L+ Sbjct: 376 NQVYA--------DVIVVDPPRKGCDEVCLDTIVKMGPKRVVYVSCDSATLARDMKYLAE 427 Query: 338 -THTIERLALFDQFPYTRHMECGVLLVRK 365 + + ++ D FP++ H EC V L RK Sbjct: 428 RGYEVVKVRGCDMFPHSTHTECCVKLERK 456 >gi|315645285|ref|ZP_07898410.1| RNA methyltransferase, TrmA family protein [Paenibacillus vortex V453] gi|315279327|gb|EFU42633.1| RNA methyltransferase, TrmA family protein [Paenibacillus vortex V453] Length = 502 Score = 282 bits (722), Expect = 6e-74, Method: Composition-based stats. Identities = 80/412 (19%), Positives = 140/412 (33%), Gaps = 65/412 (15%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ------------------------------VP 31 L Y QL K + + + Sbjct: 106 GCQLQHMSYAGQLEWKRQLVVDNLERIGKLRVVREAAGAGETRVEDGQDTGNSDREGILV 165 Query: 32 NLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINA------ 85 + SEP YR +++ I L + + + + ++ + + Sbjct: 166 RPTLGMSEPWRYRNKSQVPIGVTEGGLVGGFYARGSHRIVDMETCLIQHEQNDEVVSRVK 225 Query: 86 -----LMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRD 140 L I + LLR + +I + T + +VT + W +R+ Sbjct: 226 AIGRKLGITAYNEETGQGLLRHVVVKIGFATREMMIVLVTNGERIPCVNEW---ISAIRE 282 Query: 141 ALHARKYQIQLIGRANKTKICLDRD----YVDERLTVAGRTLIYRQIENSFTQPNAGINV 196 L A Q + KT + + E + + + SF Q N Sbjct: 283 ELPAVVSVCQNVNT-RKTNVIFGDVTRVLWGREVIHDYIGDVKFAISARSFYQVNPAQTE 341 Query: 197 HMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH 255 + + + +++ YCG G SL LA+H +V VEI K ++E AR N N Sbjct: 342 VLYGKTVEYAGLTGAETVIDAYCGIGTISLFLAQHAKKVYGVEIVKEAIEDARANAELNG 401 Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY 315 + +V+ +S++ + I VDPPR G D + + Sbjct: 402 MKHVEFEVGASEDVIPRWKE------------QGIEADVIVVDPPRKGCDPRLLETILEM 449 Query: 316 P--HILYISCNPDSLCRDLSILS-TTHTIERLALFDQFPYTRHMECGVLLVR 364 ++Y+SCNP +L RDL +L + + D FP+T H+E +L+R Sbjct: 450 KPERVVYVSCNPSTLARDLRVLKDGGYRTVEVTPVDMFPHTVHVESVAVLMR 501 >gi|228478261|ref|ZP_04062869.1| 23S rRNA-methyltransferase RumA [Streptococcus salivarius SK126] gi|228249940|gb|EEK09210.1| 23S rRNA-methyltransferase RumA [Streptococcus salivarius SK126] Length = 452 Score = 282 bits (722), Expect = 6e-74, Method: Composition-based stats. Identities = 79/384 (20%), Positives = 153/384 (39%), Gaps = 40/384 (10%) Query: 7 IDQYEQQLAEKVDRLRQMMLAF-QVPNLQI----FRSEPIHYRMRAEFHIWHDGDDLYHI 61 YE+QL K ++ + + ++++ P YR +A+ + L Sbjct: 85 HMTYEEQLKFKRKQVVDNLYKTAGISDVEVAETLGMETPYAYRNKAQVPVRRVKGQLETG 144 Query: 62 MFDQQTKERMRIDYFMPGSLLINALMI---EMMATIRLEP--------LLRAKLFQIDYL 110 + + + + + I+ F+ I+ L++ +++ L+P L+R + + + Sbjct: 145 FYRKNSHDLIPIEDFLIQDKEIDKLIVFVRDLLRRYDLKPYDEKEQTGLIRHLVVRRGHY 204 Query: 111 TSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD----Y 166 + Q VT R + ++ +A IQ I N T +D Y Sbjct: 205 SGQIMLVFVT---TRPKIFRIDQIIAKITEAFPNIVSIIQNINDKN-TNAIFGKDFRTLY 260 Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATK-GIQGDLLELYCGNGNFSL 225 + +T + Y SF Q N + + + + + +++ Y G G L Sbjct: 261 GQDTITDSMLGNDYEISAQSFYQVNTEMAEKLYQTAIDFSDLNSDSIVIDAYSGIGTIGL 320 Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285 A+ V VE+ + +VE A+ N N + N V S++ ++ Sbjct: 321 SFAKQVKEVYGVEVIETAVEDAKKNADRNGITNAHYVADSAENAMAKWSKD--------- 371 Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGM-VQAYP-HILYISCNPDSLCRDLSILST-THTIE 342 + I VDPPR GL ++ + V P I Y+SCNP ++ RD+ + + ++ Sbjct: 372 ---GIKPDVIIVDPPRKGLTESFIKASVAMQPEKITYVSCNPATMARDIKLYQELGYELK 428 Query: 343 RLALFDQFPYTRHMECGVLLVRKP 366 ++ D FP T H+EC LL ++ Sbjct: 429 KVQPVDLFPQTHHVECVCLLEKRN 452 >gi|291541326|emb|CBL14437.1| SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Roseburia intestinalis XB6B4] Length = 621 Score = 282 bits (721), Expect = 7e-74, Method: Composition-based stats. Identities = 94/392 (23%), Positives = 159/392 (40%), Gaps = 43/392 (10%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAE--FHIWHDGDDLYHIMFDQQ 66 YE+QL EK + +R+ + F I P HYR + F I G + ++ Sbjct: 135 PYEKQLKEKQEYVRKNVGEFCKVLPIIGMEHPYHYRNKVHAVFDIA-KGGSVISGVYKAG 193 Query: 67 TKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115 T + + ID L+ + I+ LLR L + + S Sbjct: 194 THDVVNIDSCRIEDETADAIIRDIRGLLRSFKIKTYDEDTGYGLLRHVLVRRGF---HSG 250 Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTK--------ICLDRDYV 167 + +V L+ + + LR LH + L KT + + Y+ Sbjct: 251 EVMVVLVLGSPILPSKNNFVKALR-KLHPEITTVVLNVNDKKTSMILGEKETVIYGKGYI 309 Query: 168 DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNFSLV 226 ++ L +R SF Q N + + A + +++ YCG G L+ Sbjct: 310 EDTLC----GCTFRISPKSFYQVNPVQTEILYTKAIEYAGLTGKERIVDAYCGIGTIGLI 365 Query: 227 LARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM---RREREFNRLK 283 A V++VE+ + +V A N N + NV+ + +F M R +++ N++ Sbjct: 366 AASKAKEVISVELNRDAVRDAVTNAKRNDIKNVQFYNADAGQFMVEMAEYRADQKKNQVP 425 Query: 284 DIDIHSYRF------KTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL 335 D + +F+DPPR+G D+A + V A ++YISCNP++L RDL L Sbjct: 426 DATKSGKKATPDGNVDVVFMDPPRAGSDEAFLSSVIRLAPKRVVYISCNPETLARDLKYL 485 Query: 336 ST-THTIERLALFDQFPYTRHMECGVLLVRKP 366 + + + D FP+T+H+E VLL K Sbjct: 486 TKHGYQAKECQPVDLFPWTKHVETVVLLSHKK 517 >gi|227517694|ref|ZP_03947743.1| TrmA family tRNA (uracil-5-)-methyltransferase [Enterococcus faecalis TX0104] gi|227074849|gb|EEI12812.1| TrmA family tRNA (uracil-5-)-methyltransferase [Enterococcus faecalis TX0104] Length = 504 Score = 282 bits (721), Expect = 7e-74, Method: Composition-based stats. Identities = 80/379 (21%), Positives = 150/379 (39%), Gaps = 40/379 (10%) Query: 10 YEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 Y QL+ K ++ +M I ++P HYR +A+ + + L F Sbjct: 139 YGAQLSFKTQQVENVMQRVAKLPEVPVLPTIGMNDPWHYRNKAQIPVRKIDNQLQTGFFR 198 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKLFQIDYLTSQ 113 + + + + +++F L I+A ++++ +R LR + + Y T + Sbjct: 199 KNSHDLIPMEHFYIQDLEIDAAIVKIRDIMRKYSVKPYNESDNTGNLRHIVVRRGYHTGE 258 Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD----YVDE 169 ++T L + L +A+ +Q + T + + + E Sbjct: 259 MMVVLITRTP--KLFPISKIVPDIL-EAIPEVVSIVQNVNPKR-TNVIFGNETILLHGSE 314 Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLA 228 + T L + SF Q N M + V + +++ YCG G L LA Sbjct: 315 KNTDTIFDLKFEISARSFYQVNPQQTEVMYQKVKEYAALTGNEIVVDAYCGIGTIGLTLA 374 Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288 + +V +E+ + +V+ A N N++ N ++E L + + Sbjct: 375 QDAKQVYGIEVIEEAVKDAENNAKLNNIENATFTAGLAEEL------------LPKLVEN 422 Query: 289 SYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STTHTIERLA 345 + + VDPPR GLD V + I+Y+SCNP +L RD+++L + + + Sbjct: 423 GLQPDVVVVDPPRKGLDGQLVNTLIETQPERIVYVSCNPATLARDIALLTEGGYEAKEIQ 482 Query: 346 LFDQFPYTRHMECGVLLVR 364 D FP T H+E LL + Sbjct: 483 PVDNFPQTTHIESVTLLTK 501 >gi|160914430|ref|ZP_02076645.1| hypothetical protein EUBDOL_00434 [Eubacterium dolichum DSM 3991] gi|158433588|gb|EDP11877.1| hypothetical protein EUBDOL_00434 [Eubacterium dolichum DSM 3991] Length = 455 Score = 282 bits (721), Expect = 7e-74, Method: Composition-based stats. Identities = 81/379 (21%), Positives = 153/379 (40%), Gaps = 31/379 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWHDGDD 57 L Y +QL K ++ +M +++ I P YR + + + Sbjct: 93 GCQLQHVSYAEQLRFKKQKVIDVMKRIAQIDVEVLDVIGMENPTFYRNKGQIPVGITNKQ 152 Query: 58 LYHIMFDQQTKERMRIDYFMPGSLLINA---LMIEMMATIRLEPLLRAKLFQIDYLTSQS 114 + + + + ++ M S IN M +++ + L R L + + + Sbjct: 153 VVTGFYRINSNTIIDMNSCMIQSKRINEVLVCMKKLLNKYQNADLFRHLLIKDAFASG-- 210 Query: 115 DQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD----YVDER 170 + +V I E L + L K I + + + L ++ Y + Sbjct: 211 -EVMVVWIVRSSKLSHKEEMCKELVENLPYIKSVIINVNT-REDNVILGKEEHVLYGNSY 268 Query: 171 LTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNFSLVLAR 229 +T A L + SF Q N + L A + ++++LYCG G S+ LA+ Sbjct: 269 ITDAIHDLNFHISSRSFYQVNPVQTERLYGKALEFAQLSGKEEVIDLYCGVGTISMFLAQ 328 Query: 230 HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHS 289 V+ VEI ++ A+ N N ++N+ V + + + + + Sbjct: 329 KAKHVIGVEIVDAAIRDAKINAKLNQIDNIDFVCSDAASYAKKLEK------------QG 376 Query: 290 YRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCRDLSIL-STTHTIERLAL 346 + + VDPPR G DD T+ +V+ P I+Y+SC+P +L RD+ L + + + Sbjct: 377 KKPDVVVVDPPRKGCDDLTLDSIVKMQPKRIVYVSCDPATLARDIKKLDEKGYAAQVVQP 436 Query: 347 FDQFPYTRHMECGVLLVRK 365 D FP++ H+E VLL ++ Sbjct: 437 VDMFPFSFHVESIVLLQKR 455 >gi|257080993|ref|ZP_05575354.1| RNA methyltransferase [Enterococcus faecalis E1Sol] gi|256989023|gb|EEU76325.1| RNA methyltransferase [Enterococcus faecalis E1Sol] Length = 457 Score = 282 bits (721), Expect = 8e-74, Method: Composition-based stats. Identities = 78/379 (20%), Positives = 150/379 (39%), Gaps = 40/379 (10%) Query: 10 YEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 Y QL+ K ++ +M I ++P HYR +A+ + + L F Sbjct: 92 YGAQLSFKTQQVENVMQRVAKLPEVPVLPTIGMNDPWHYRNKAQIPVRKIDNQLQTGFFR 151 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIR-----------LEPLLRAKLFQIDYLTSQ 113 + + + + +++F I+A ++++ +R LR + + Y T + Sbjct: 152 KNSHDLIPMEHFYIQDPEIDAAIVKIRDIMRRYSVKPYNESDNTGNLRHIVVRRGYHTGE 211 Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD----YVDE 169 ++T L + L +A+ +Q + T + + + E Sbjct: 212 MMVVLITRTP--KLFPISKIVPDIL-EAIPEVVSIVQNVNPKR-TNVIFGDETILLHGSE 267 Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLA 228 ++T L + SF Q N M + V + +++ YCG G L LA Sbjct: 268 KITDTIFDLKFEISARSFYQVNPQQTEVMYQKVKEYAALTGNEIVVDAYCGIGTIGLTLA 327 Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288 + ++ +E+ + +V+ A N N++ N ++E L + + Sbjct: 328 QDAKQIYGIEVIEEAVKDAENNAKLNNIENATFTAGLAEEL------------LPKLVEN 375 Query: 289 SYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STTHTIERLA 345 + + VDPPR GLD V + I+Y+SCNP +L RD+++L + + + Sbjct: 376 GLQPDVVVVDPPRKGLDGQLVNTLIETQPERIVYVSCNPATLARDIALLTEGGYEAKEIQ 435 Query: 346 LFDQFPYTRHMECGVLLVR 364 D FP T H+E LL + Sbjct: 436 PVDNFPQTTHIESVTLLTK 454 >gi|315025773|gb|EFT37705.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis TX2137] Length = 504 Score = 281 bits (720), Expect = 9e-74, Method: Composition-based stats. Identities = 78/379 (20%), Positives = 150/379 (39%), Gaps = 40/379 (10%) Query: 10 YEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 Y QL+ K ++ +M I ++P HYR +A+ + + L F Sbjct: 139 YGAQLSFKTQQVENVMQRVAKLPEVPVLPIIGMNDPWHYRNKAQIPVRKIDNQLQTGFFR 198 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKLFQIDYLTSQ 113 + + + + +++F I+A ++++ +R LR + + Y T + Sbjct: 199 KNSHDLIPMEHFYIQDPEIDAAIVKIRDIMRKYSVKPYNESDNTGNLRHIVVRRGYHTGE 258 Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD----YVDE 169 ++T L + L +A+ +Q + T + + + + Sbjct: 259 MMVVLITRTP--KLFPISKIVPDIL-EAIPEVVSIVQNVNPKR-TNVIFGDETILLHGSK 314 Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLA 228 ++T L + SF Q N M + V + +++ YCG G L LA Sbjct: 315 KITDTIFDLKFEISARSFYQVNPQQTEVMYQKVKEYAALTGNEIVVDAYCGIGTIGLTLA 374 Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288 + +V +E+ + +V+ A N N++ N ++E L + + Sbjct: 375 QDAKQVYGIEVIEEAVKDAENNAKLNNIENATFTAGLAEEL------------LPKLVEN 422 Query: 289 SYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STTHTIERLA 345 + + VDPPR GLD V + I+Y+SCNP +L RD+++L + + + Sbjct: 423 GLQPDVVVVDPPRKGLDGQLVNTLIETQPERIVYVSCNPATLARDIALLTEGGYEAKEIQ 482 Query: 346 LFDQFPYTRHMECGVLLVR 364 D FP T H+E LL + Sbjct: 483 PVDNFPQTTHIESVTLLTK 501 >gi|260893156|ref|YP_003239253.1| RNA methyltransferase, TrmA family [Ammonifex degensii KC4] gi|260865297|gb|ACX52403.1| RNA methyltransferase, TrmA family [Ammonifex degensii KC4] Length = 436 Score = 281 bits (720), Expect = 9e-74, Method: Composition-based stats. Identities = 87/376 (23%), Positives = 153/376 (40%), Gaps = 31/376 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQV-----PNLQIFRSEPIHYRMRAEFHIWHDGD 56 LL YE QL K + ++L + P HYR + H+ +G Sbjct: 79 GCQLLHLDYEHQLHFKNKVVENVLLRLGKLTEVEVKPILGMENPWHYRNKVRLHVAWEGR 138 Query: 57 DLYHIMFDQQTK---ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQID-YLTS 112 ++ + R+ +NAL + I+ + A L + L + Sbjct: 139 KPVLGLYAPSSHVIGHRIDRSPCYILDGQLNALARVLAGLIKKHAEMLAGLTAVSLRLAA 198 Query: 113 QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLT 172 + + +V L W+ L A+ + +G K ++ ++ + L Sbjct: 199 ATGETMVVLEGASEHYSRWKRLVDELTAAVP--VTTVVRVGARGKEEVLYGEGHITDSL- 255 Query: 173 VAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNFSLVLARHF 231 L +R SF Q N + VL A+ + +++ YCG G +L LAR Sbjct: 256 ---DGLSFRLSALSFYQVNPVQTSRLYRKVLEYASLSGRERVIDAYCGVGTITLFLARKA 312 Query: 232 DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291 +V+ +EI+ +V A N A N +++V V+ +++E L ++ Sbjct: 313 AQVIGIEISPEAVALASVNAAQNGLSHVSFVKGAAEEV------------LPELLAREGM 360 Query: 292 FKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILS-TTHTIERLALFD 348 F + +DPPR G+ A + + P ++Y+SCNP +L RDL LS + ++ + D Sbjct: 361 FDLVVLDPPRQGVKQAALESLVRAQVPRVIYVSCNPATLARDLGFLSAQGYRVQEVQPVD 420 Query: 349 QFPYTRHMECGVLLVR 364 FP+T H+EC L R Sbjct: 421 MFPHTYHVECVAYLCR 436 >gi|194018043|ref|ZP_03056649.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus pumilus ATCC 7061] gi|194010288|gb|EDW19864.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus pumilus ATCC 7061] Length = 461 Score = 281 bits (720), Expect = 9e-74, Method: Composition-based stats. Identities = 78/390 (20%), Positives = 157/390 (40%), Gaps = 42/390 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54 L YEQQL EK D + Q M +++ I +P HYR +++F + Sbjct: 88 GCQLQHLAYEQQLKEKRDIVIQSMERHTKISVEKLDIRPTIGMEDPWHYRNKSQFQVGRS 147 Query: 55 -GDDLYHIMFDQQTKERMRIDYFMPGSLLINA-----------LMIEMMATIRLEPLLRA 102 D+ ++ + + + I + N + + + +R+ Sbjct: 148 HSGDIIAGLYGLNSHKLVPIKECIVQHPKTNKTTGVVRKILEKFGVSVYNERTRKGDVRS 207 Query: 103 KLFQIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKT 158 + ++ + T + +VT + + +A ++ + +H + + +KT Sbjct: 208 IVVRVGFETGEVQVVLVTSKPEFPKKKEIAEAIQKRLPEVTSIMHNINGEKTSVIFGHKT 267 Query: 159 KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELY 217 + E L + + +F Q N + + + AA + +++ Y Sbjct: 268 SHLAGNMVIQEFLG----DVSFELSARAFFQLNPKQTLKLYDEAKKAAKLTGKEKIVDAY 323 Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277 CG G + L+ V +++ K S++ A+ N + + N V +++ + +E Sbjct: 324 CGVGTIGMWLSDGAKEVRGMDVIKESIDDAKKNAKKHGMKNATYVTGTAEHWLPKWVKE- 382 Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSIL 335 +R I VDPPR+G + + V+ ++Y+SCNP +L +DL + Sbjct: 383 -----------GFRPDVIVVDPPRTGCERTFLDTVKQVKPKRLVYVSCNPSTLAKDLEYI 431 Query: 336 STTHTIERLALFDQFPYTRHMECGVLLVRK 365 S + IE + D FP+T H+E V LV+K Sbjct: 432 SKDYKIEYMQPVDMFPHTAHVETVVSLVKK 461 >gi|168333730|ref|ZP_02691983.1| RNA methyltransferase [Epulopiscium sp. 'N.t. morphotype B'] Length = 446 Score = 281 bits (720), Expect = 9e-74, Method: Composition-based stats. Identities = 86/387 (22%), Positives = 155/387 (40%), Gaps = 46/387 (11%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQV-----PNLQIFRSEPIHYRMRAEFHIWHDGD 56 +YE QL K +++ + I PIHYR +A++ I Sbjct: 79 GCVAQHIKYEFQLKYKQKQVKDCLERIGKIREVEVLPTIAMENPIHYRNKAQYPIREVDG 138 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLL-------INALMIEMMATIRLEPLLRAKLFQIDY 109 + + ++ + + I+ + G+ I + +I E + + Sbjct: 139 KIQIGFYAAKSHQVVDIEDCVIGNQKNGAIVDAIRKFXKDXKISIYNEATHKGLARHLVI 198 Query: 110 LTSQS-DQAIVTLIYHRLLDDAWRECAIRLR------DALHARKYQIQLIGRANKTKICL 162 S + D+A+V L+ + ++ RLR L + A +T Sbjct: 199 RNSINFDEAMVCLVINGKKLPHAQDLVERLRAIPGITGILLNHNTAKGNVILAEQTTTLD 258 Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG--DLLELYCGN 220 RDY+ +++ L ++ SF Q N + +L + + G +L+ YCG Sbjct: 259 GRDYIMDKIG----ELTFKISLLSFFQVNP-VQTKVLYDIALGVAALTGSETVLDAYCGI 313 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G SL LA+ RV+ VE +V A N N + NV+ V ++++ Sbjct: 314 GTISLFLAKEAKRVVGVEAIPQAVANANENAQINGIANVEFVLGNAEDV----------- 362 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-ST 337 + +F + VDPPR G ++ + + A ++YISC+P +L RD+ + Sbjct: 363 ------VLGEKFDVVVVDPPRKGCEEDFLKTIVANAPAKMVYISCDPATLARDVKFMYEN 416 Query: 338 THTIERLALFDQFPYTRHMECGVLLVR 364 + + ++ D FPYT H+E VLL R Sbjct: 417 GYVVNKVQPVDMFPYTSHVETCVLLSR 443 >gi|323489776|ref|ZP_08095001.1| putative RNA methyltransferase [Planococcus donghaensis MPA1U2] gi|323396514|gb|EGA89335.1| putative RNA methyltransferase [Planococcus donghaensis MPA1U2] Length = 453 Score = 281 bits (720), Expect = 1e-73, Method: Composition-based stats. Identities = 76/390 (19%), Positives = 144/390 (36%), Gaps = 48/390 (12%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-VPNLQI----FRSEPIHYRMRAEFHIWHDGD 56 + YE Q+ K +R + +P++ + +P YR +++ Sbjct: 82 GCQIQHLSYEGQMTFKQKLVRDAITRIGKLPDVPVHPVKGMEDPWRYRNKSQIPFGTQDG 141 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEM-----------MATIRLEPLLRAKLF 105 + + ++ + D + + +A+M+ + +LR + Sbjct: 142 KVVAGFYQPRSHDIADTDTCLIQTPEADAIMVALKKSLIDMGIDPYEEATHRGMLRHVVV 201 Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD 165 + T + +V L+ + + ++ + +Q I KT + Sbjct: 202 RKARATG---EIMVVLVTKKKKFPQAQRAIELIQATVPEVTSIVQNINP-EKTNVIFG-- 255 Query: 166 YVDERLTVAGRTLI--------YRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLEL 216 DE LT+ G+ +I + SF Q N + LA A + +++ Sbjct: 256 --DETLTLWGKDVIEDRIGDVRFEISARSFYQINPVQTEVLYGQALAYAQLTGEETVIDA 313 Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276 YCG G SL LA+ V+ VEI ++E A+ N N + N +++ +E Sbjct: 314 YCGIGTISLFLAQRAKFVMGVEIVPQAIEDAKRNAELNGLTNTLFEAGPAEQVIPRWYKE 373 Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSI 334 + + VDPPR G D+ + + ++Y+SCNP +L RDL I Sbjct: 374 ------------GKKADVLVVDPPRKGCDEQLLHTILKQRPTRVVYVSCNPATLARDLRI 421 Query: 335 LS-TTHTIERLALFDQFPYTRHMECGVLLV 363 L + + + D FP + H E L Sbjct: 422 LEDGGYRTKEVQPVDMFPQSTHCEAVAWLE 451 >gi|261405173|ref|YP_003241414.1| TrmA family RNA methyltransferase [Paenibacillus sp. Y412MC10] gi|261281636|gb|ACX63607.1| RNA methyltransferase, TrmA family [Paenibacillus sp. Y412MC10] Length = 532 Score = 281 bits (720), Expect = 1e-73, Method: Composition-based stats. Identities = 83/388 (21%), Positives = 139/388 (35%), Gaps = 40/388 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFHIWHDGD 56 + YE QL K D +R+ + + + P YR +A+ + G Sbjct: 160 GCQIQHISYEGQLQAKTDIVREAFSRYVGLDDVKFKPILGMEHPWDYRNKAQLQLKRKGH 219 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINA-----------LMIEMMATIRLEPLLRAKLF 105 ++ +++ + + I +N L I + + +R + Sbjct: 220 EVIAGLYEADSHTIVDISGCPIQHPKVNETVEKVKSVLEELRIPLYKENGAKDGVRTIVV 279 Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD 165 + + QS + VTLI + LR + I L KT + Sbjct: 280 RHGF---QSGEVQVTLITAGSKLPRQDDLVRMLRLTIPEVS-GISLNINPKKTSLIFGDR 335 Query: 166 YVD----ERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWV-LAATKGIQGDLLELYCGN 220 V E + + L + +F Q N V + E V AA + +++ YCG Sbjct: 336 TVSLWGAESMQESLSDLQFSLSPRAFFQLNPQQTVKLYESVRAAAGLTGKETVIDAYCGT 395 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G L LA + V +E +VE A+ N N N ++E +E Sbjct: 396 GTIGLWLAPYAKEVRGIETIPEAVEDAKANAQRNGRANASFHVGQAEELLPRWVKE---- 451 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLS-ILST 337 + I DPPR+GLD + V +Y+SCNP +L +D +L Sbjct: 452 --------GMKPDVIIADPPRTGLDPRFLETVLRTKPKRFVYVSCNPSTLAKDCKVLLDG 503 Query: 338 THTIERLALFDQFPYTRHMECGVLLVRK 365 + +E D FP T H+E +L+ K Sbjct: 504 GYELEWAQPVDMFPQTSHVEAVLLMKLK 531 >gi|284049068|ref|YP_003399407.1| RNA methyltransferase, TrmA family [Acidaminococcus fermentans DSM 20731] gi|283953289|gb|ADB48092.1| RNA methyltransferase, TrmA family [Acidaminococcus fermentans DSM 20731] Length = 458 Score = 281 bits (720), Expect = 1e-73, Method: Composition-based stats. Identities = 75/389 (19%), Positives = 141/389 (36%), Gaps = 41/389 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56 L Y QLA K + M + +P HYR + + + Sbjct: 86 GCQLQHLSYPAQLALKRQTVVDAMERIGHFTKLSVQETLGAEDPWHYRNKMQVPAAQGRN 145 Query: 57 DLYH-IMFDQQTKERMRIDYFMPGSLLINALMIEM-----------MATIRLEPLLRAKL 104 + Q T + + + N ++ + + ++R + Sbjct: 146 HTLAIGCYAQGTHRVIDVKDCLIQQQANNRIVQVVRSWMEKYRIPALEEDARRGIVRHIM 205 Query: 105 FQIDYLTSQSDQAIVTLI----YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKI 160 ++ T + +VT + + L R+ + + + K K+ Sbjct: 206 GRVGVQTGEVMAVLVTNEPQVPHLKDLTALLRQEIPGFTTLVQNLNTRHTNVIMGPKNKV 265 Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCG 219 + +RL + +SF Q N + E L A + +++ YCG Sbjct: 266 IWGPGVIHDRLG----KFTFTISPHSFFQVNTLQAEKLYETALQYAALTGKEKVIDAYCG 321 Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279 G +L LA+ R L +EI +P++ AR N N V+NV + + + Sbjct: 322 TGTITLFLAQKAKRALGIEIVEPAIRDARQNARDNQVSNVDFLCGDAAK----------- 370 Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSIL-S 336 + ++ R + +DPPR+G + + + ++Y+SCNP SL RD +IL Sbjct: 371 -EMPELVRQGSRPDVVVLDPPRAGCEQRVLEAIAKVRPQRVVYVSCNPASLARDAAILRD 429 Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVRK 365 + ++ D FP+T H+E LL + Sbjct: 430 KGFVVRKVQPVDMFPHTSHVETVCLLTLR 458 >gi|257086087|ref|ZP_05580448.1| RNA methyltransferase [Enterococcus faecalis D6] gi|256994117|gb|EEU81419.1| RNA methyltransferase [Enterococcus faecalis D6] Length = 457 Score = 281 bits (720), Expect = 1e-73, Method: Composition-based stats. Identities = 78/379 (20%), Positives = 150/379 (39%), Gaps = 40/379 (10%) Query: 10 YEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 Y QL+ K ++ +M I ++P HYR +A+ + + L F Sbjct: 92 YGAQLSFKTQQVENVMQRVAKLPEVPVLPIIGMNDPWHYRNKAQIPVRKIDNQLQTGFFR 151 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKLFQIDYLTSQ 113 + + + + +++F I+A ++++ +R LR + + Y T + Sbjct: 152 KNSHDLIPMEHFYIQDPEIDAAIVKIRDIMRKYSVKPYNESDNTGNLRHIVVRRGYHTGE 211 Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD----YVDE 169 ++T L + L +A+ +Q + T + + + + Sbjct: 212 MMVVLITRTP--KLFPISKIVPDIL-EAIPEVVSIVQNVNPKR-TNVIFGDETILLHGSK 267 Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLA 228 ++T L + SF Q N M + V + +++ YCG G L LA Sbjct: 268 KITDTIFDLKFEISARSFYQVNPQQTEVMYQKVKEYAALTGNEIVVDAYCGIGTIGLTLA 327 Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288 + +V +E+ + +V+ A N N++ N ++E L + + Sbjct: 328 QDAKQVYGIEVIEEAVKDAENNAKLNNIENATFTAGLAEEL------------LPKLVEN 375 Query: 289 SYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STTHTIERLA 345 + + VDPPR GLD V + I+Y+SCNP +L RD+++L + + + Sbjct: 376 GLQPDVVVVDPPRKGLDGQLVNTLIETQPERIVYVSCNPATLARDIALLTEGGYEAKEIQ 435 Query: 346 LFDQFPYTRHMECGVLLVR 364 D FP T H+E LL + Sbjct: 436 PVDNFPQTTHIESVTLLTK 454 >gi|319892940|ref|YP_004149815.1| RNA methyltransferase, TrmA family [Staphylococcus pseudintermedius HKU10-03] gi|317162636|gb|ADV06179.1| RNA methyltransferase, TrmA family [Staphylococcus pseudintermedius HKU10-03] Length = 454 Score = 281 bits (719), Expect = 1e-73, Method: Composition-based stats. Identities = 78/388 (20%), Positives = 156/388 (40%), Gaps = 40/388 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMML-AFQVPNLQI----FRSEPIHYRMRAEFHIWHDGD 56 L Y QL K ++ + ++ + I +P YR +++ + + + Sbjct: 82 GCQLQHLSYRAQLEMKRKQVINLFHHKGKMTEVPIHDTIGMDDPWRYRNKSQIPVGTNRN 141 Query: 57 DLYH-IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKL 104 + Q++ + + +D+ + + N +M + + + + L+R + Sbjct: 142 GQIQMGFYRQRSHDIIDMDHCLIQNDDQNDMMNVIKSLLEKYHIPAYNEHIHQGLVRHVV 201 Query: 105 FQIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKI 160 + Y T++ V L +H + A ++ + + + +K Sbjct: 202 IRKGYYTNEVMVIFVLNGKKLPHHNDIVTALTSQFPQIVSIKLNFQTNKTNVIMGHTSKT 261 Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCG 219 +D +++ L L + + SF Q N + L ++ L+ YCG Sbjct: 262 IFGKDIIEDTL----DDLTFEIGDLSFYQINVTQTQKLYRQALQYANLTGNEVVLDAYCG 317 Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279 G SL +A H V VE+ ++E A+ N N +NN V ++++ +++ Sbjct: 318 IGTISLFMAPHAQHVYGVEVVPEAIEDAKRNARYNQLNNTTFVAGAAEDVILKWQQD--- 374 Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILST 337 + + VDPPR G D + + A I+Y+SCNP + RD+ +LS Sbjct: 375 ---------GIQPDVVTVDPPRKGCDATFIETLNALAPKRIVYVSCNPSTQLRDIEMLSA 425 Query: 338 THTIERLALFDQFPYTRHMECGVLLVRK 365 + ++ + D FP+T H+E LLVRK Sbjct: 426 QYELKEMTPVDMFPHTTHVETVALLVRK 453 >gi|311067291|ref|YP_003972214.1| putative RNA methyltransferase [Bacillus atrophaeus 1942] gi|310867808|gb|ADP31283.1| putative RNA methyltransferase [Bacillus atrophaeus 1942] Length = 466 Score = 281 bits (719), Expect = 1e-73, Method: Composition-based stats. Identities = 82/395 (20%), Positives = 152/395 (38%), Gaps = 48/395 (12%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMML---AFQVPNL----QIFRSEPIHYRMRAEFHIWH- 53 L Y QQL EK D + Q + F+V ++ I P +YR +++F I Sbjct: 90 GCQLQHLAYTQQLREKRDIVIQSLERHTKFKVEDMNIKETIGMDNPWNYRNKSQFQIGRS 149 Query: 54 DGDDLYHIMFDQQTKERMRIDYFMPGSLLIN-----------ALMIEMMATIRLEPLLRA 102 + ++ + + I N + + + + +R Sbjct: 150 QSGSIIAGLYGMDSHNIVPIKDCKVQHPATNKTTGIVRRILEDFNVSVYNERKRKGDVRT 209 Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIG-------RA 155 + ++ + ++ + V LI + E ++ L K IQ + Sbjct: 210 IVTRVGF---ETGEVQVVLITSKETLPHKEEIVQAIQKRLPEVKSIIQNVNGAKTSVIFG 266 Query: 156 NKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLL 214 +KTK + E L + + +F Q N V + + V AA + ++ Sbjct: 267 DKTKALAGNTVIQEVLG----DVSFELSARAFFQLNPEQTVKLYDEVKKAAQLTGKEKVV 322 Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274 + YCG G + +A V +++ K S++ A+ N + + N V +++ + Sbjct: 323 DAYCGVGTIGMWVADGAKEVRGMDVIKESIDDAKKNAKKHGMTNATYVTGTAEHWLPKWT 382 Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDL 332 +E +R + VDPPR+G D + ++ +Y+SCNP +L +DL Sbjct: 383 KE------------GFRPDVVIVDPPRTGCDTTFLDTIKKVKPKRFVYVSCNPSTLAKDL 430 Query: 333 SILSTTHTIERLALFDQFPYTRHMECGVLLVRKPS 367 LS + +E + D FP T H+E LV K S Sbjct: 431 QALSKDYRVEYIQPVDMFPQTAHVEAVAQLVLKSS 465 >gi|259502578|ref|ZP_05745480.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus antri DSM 16041] gi|259169468|gb|EEW53963.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus antri DSM 16041] Length = 479 Score = 281 bits (719), Expect = 1e-73, Method: Composition-based stats. Identities = 76/383 (19%), Positives = 152/383 (39%), Gaps = 38/383 (9%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWHDGDDLYH 60 L +Y QL K ++ +++ + +++ P HYR +A+ + L Sbjct: 109 LGHLKYLAQLRFKQHQIEELLAKAHLDGIKVAPTMGMERPYHYRNKAQVPVKLVHGKLET 168 Query: 61 IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKLFQIDY 109 + + + + I+ F I+ ++ + +R + ++R + + Y Sbjct: 169 GFYKRGSHTLVPIEDFYIQDPKIDEAIVVVRDLLRKYHVTPYDERTGKGVIRTVMVRRGY 228 Query: 110 LTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD---Y 166 + + +VT + + + + + K +Q I K+ D D + Sbjct: 229 YSHEVMVVLVTNTKRLPMKE---QIVDGIVAGVPEVKSIVQNINDKRTNKLLGDTDKTLW 285 Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNFSL 225 + + + + SF Q N + + + A +++ YCG G SL Sbjct: 286 GKDEIHDQLLGIDFAISPLSFYQVNPQQTERLYQTAIDSAGLDGSQTVIDAYCGIGTISL 345 Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285 +ARH +V VEI ++E A++N N + N K V +++ + Sbjct: 346 AVARHAKQVYGVEIVPAAIEDAKHNAKRNGIKNAKFVVGKAED------------QFAKW 393 Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILS--TTHTI 341 + + VDPPR GL ++ + A ++Y+SCNP +L RD+ + H + Sbjct: 394 QAAGLKPDVVIVDPPRKGLAESLIEATGEMAPQKVIYVSCNPATLVRDIQRFADVGYHVV 453 Query: 342 ERLALFDQFPYTRHMECGVLLVR 364 + + DQFP T H+E +L R Sbjct: 454 KPIQPVDQFPQTTHVESVTVLER 476 >gi|326204866|ref|ZP_08194719.1| RNA methyltransferase, TrmA family [Clostridium papyrosolvens DSM 2782] gi|325984915|gb|EGD45758.1| RNA methyltransferase, TrmA family [Clostridium papyrosolvens DSM 2782] Length = 462 Score = 281 bits (719), Expect = 1e-73, Method: Composition-based stats. Identities = 81/387 (20%), Positives = 145/387 (37%), Gaps = 42/387 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56 + Y+ QL K D + Q + N I P YR + ++ + D Sbjct: 87 GCAVQHMSYQAQLDFKKDTVLQNIRRIGGLQNIKVNNTIGMENPFKYRNKVQYPVGSDKG 146 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALM-----------IEMMATIRLEPLLRAKLF 105 D+ ++ ++ + + N + I + + LLR + Sbjct: 147 DIRIGFYETRSHNIIDSNLCDIQPDESNNIRDVVRDFCKDEGIAIYDEKTGKGLLRHVMV 206 Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR- 164 + + T + +V D E +L + K I + T I L Sbjct: 207 RKGFKTEEIMVVLVVNGNKLAKSD---ELVNKLLEYFPDIKSIILNVNT-RNTNIILGDK 262 Query: 165 ---DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCG 219 Y + +T + + SF Q N + E L G+ G+ + +LYCG Sbjct: 263 NICIYGQKYITDYIGSFKFEISPLSFFQVNPIQTEVLYEKALE-YAGLSGNETVFDLYCG 321 Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279 G SL L++ V+ VE+ ++ A+ N N V+NV+ + +++ + Sbjct: 322 IGTISLFLSQKAKHVVGVEVVADAICDAKRNAEINGVSNVEFLVGEAEKVIPELYA---- 377 Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCRDLSILST 337 + + VDPPR G D + +V+ P I+Y+SCNP +L RDL L+ Sbjct: 378 --------QGVKADVVVVDPPRKGCDQLLLNTLVEMQPQRIVYVSCNPSTLARDLKYLTE 429 Query: 338 -THTIERLALFDQFPYTRHMECGVLLV 363 + + D FP+T H+E + + Sbjct: 430 HGFEAKEVQPVDMFPWTGHVESIIWMQ 456 >gi|255280263|ref|ZP_05344818.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bryantella formatexigens DSM 14469] gi|255269354|gb|EET62559.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bryantella formatexigens DSM 14469] Length = 399 Score = 281 bits (719), Expect = 1e-73, Method: Composition-based stats. Identities = 88/387 (22%), Positives = 151/387 (39%), Gaps = 44/387 (11%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDG-DDLYH 60 L Y QQL K ++ +++ F I P +YR + ++ Sbjct: 30 GCQFLGMPYAQQLNIKQHQVEKLLRPFGRVCPIIGMENPYYYRNKVHAVFGRTRTGEIIC 89 Query: 61 IMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLFQIDY 109 + + T + + ++ + L+ + I+ LLR L + + Sbjct: 90 GTYQENTHKIIPVEQCLIEDRKSEEIIRSIRGLLKSFKIKTYDEDTGYGLLRHVLVRRGF 149 Query: 110 LTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKT--------KIC 161 QS Q +V L+ + + LR LH I L A KT K Sbjct: 150 ---QSGQIMVVLVLADPIFPSKNNFVSALR-RLHPEITTIILNINAKKTSMVLGEREKTL 205 Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220 Y+++ L +R SF Q N + + + A + +L+ YCG Sbjct: 206 YGPGYIEDTLLGK----TFRISAKSFYQVNPVQTEVLYQTAIGYAALTGKERVLDAYCGI 261 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G L+ A V+ VE+ ++ AR N N + NVK + +F + Sbjct: 262 GTIGLLAASQAKEVIGVELNADAIRDARINARRNSITNVKFYNADAGKFMTGLAE----- 316 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST- 337 + +F+DPPR+G D+A + V ++YISCNP++L RDL L+ Sbjct: 317 -------QNINVDVVFMDPPRAGSDEAFLSSVVKLQPGKVVYISCNPETLARDLKYLTGN 369 Query: 338 THTIERLALFDQFPYTRHMECGVLLVR 364 + +E++ D F +T H+EC VL+ + Sbjct: 370 GYKVEKIQPTDMFCFTEHVECVVLMSK 396 >gi|167760785|ref|ZP_02432912.1| hypothetical protein CLOSCI_03170 [Clostridium scindens ATCC 35704] gi|167661672|gb|EDS05802.1| hypothetical protein CLOSCI_03170 [Clostridium scindens ATCC 35704] Length = 567 Score = 281 bits (719), Expect = 1e-73, Method: Composition-based stats. Identities = 87/393 (22%), Positives = 152/393 (38%), Gaps = 38/393 (9%) Query: 2 SGTLLID-QYEQQLAEKVDRLR-QMMLAFQVP--------NLQIFRSEPIHYRMRAEFHI 51 G + + +Y++QLA K D++R +M +VP + P HYR +A+F I Sbjct: 81 GGCQIQEMEYDRQLAFKEDKIRGNLMRIGEVPAEVLDQALEPIVGMDNPFHYRNKAQFPI 140 Query: 52 WHDGDD-LYHIMFDQQTKERMRIDYFMPGSLL-----------INALMIEMMATIRLEPL 99 D + + + +T + G + + I + L Sbjct: 141 GTDNEGHIITGFYAGRTHSIIPNTDCALGVEVNEVILKQILTFMEEYKISAYDETEHKGL 200 Query: 100 LRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRD---ALHARKYQIQLIGRAN 156 +R L + ++T + +V H + E ++ + + + + Sbjct: 201 VRHVLIRYGFVTKEIMVCLVINGNHLPHGEILAERLAKIEGMTSITLSINKEKTNVIMGS 260 Query: 157 KTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLE 215 K + + Y+ T + Y+ SF Q N + L A + + + Sbjct: 261 KIEPLWGKTYI----TDYIANVKYQISPLSFYQVNPVQTEKLYGLALEYAGLTGKETVWD 316 Query: 216 LYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275 LYCG G SL LA+ V VEI ++E A N N + N + ++E Sbjct: 317 LYCGIGTISLFLAQKAKEVYGVEIVPQAIEDASNNAKINGIENARFYVGKAEEVLPEYYA 376 Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCRDLS 333 + E + I VDPPR G +++ + MV P I+Y+SC+ +L RD+ Sbjct: 377 QYEKEHG-----RNAHADVIVVDPPRKGCEESLLQTMVDMEPERIVYVSCDSATLARDVK 431 Query: 334 IL-STTHTIERLALFDQFPYTRHMECGVLLVRK 365 L + + R DQF +T H+E LL+ K Sbjct: 432 FLREKGYELVRGRGVDQFGHTVHVETVALLIPK 464 >gi|323464007|gb|ADX76160.1| RNA methyltransferase, TrmA family [Staphylococcus pseudintermedius ED99] Length = 454 Score = 281 bits (719), Expect = 1e-73, Method: Composition-based stats. Identities = 79/388 (20%), Positives = 157/388 (40%), Gaps = 40/388 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMML-AFQVPNLQI----FRSEPIHYRMRAEFHIWHDGD 56 L Y QL K ++ + ++ + I +P YR +++ + + + Sbjct: 82 GCQLQHLSYRAQLEMKRKQVINLFHHKGKMTEVPIHDTIGMDDPWRYRNKSQIPVGTNRN 141 Query: 57 DLYH-IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKL 104 + Q++ + + +D+ + + N +M + + + + L+R + Sbjct: 142 GQIQMGFYRQRSHDIIDMDHCLIQNDDQNDMMNVIKSLLEKYHIPAYNEHIHQGLVRHVV 201 Query: 105 FQIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKI 160 + Y T++ V L +H + A ++ + + + +K Sbjct: 202 IRKGYYTNEVMVIFVLNGKKLPHHNDIVTALTSQFPQIVSIKLNFQTNKTNVIMGHTSKT 261 Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCG 219 +D +++ L L + + SF Q N + L ++ L+ YCG Sbjct: 262 IFGKDIIEDTL----DDLTFEIGDLSFYQINVTQTQKLYRQALQYANLTGNEVVLDAYCG 317 Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279 G SL +A H V VE+ ++E A+ N N +NN V ++++ +++ Sbjct: 318 IGTISLFMAPHAQHVYGVEVVPEAIEDAKRNARYNQLNNTTFVAGAAEDVILKWQQD--- 374 Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILST 337 + + VDPPR G D + + A I+Y+SCNP + RD+ +LST Sbjct: 375 ---------GIQPDVVTVDPPRKGCDATFIETLNALAPKRIVYVSCNPSTQLRDIEMLST 425 Query: 338 THTIERLALFDQFPYTRHMECGVLLVRK 365 + ++ + D FP+T H+E LLVRK Sbjct: 426 QYELKEMTPVDMFPHTTHVETVALLVRK 453 >gi|291522721|emb|CBK81014.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Coprococcus catus GD/7] Length = 448 Score = 281 bits (718), Expect = 1e-73, Method: Composition-based stats. Identities = 83/389 (21%), Positives = 154/389 (39%), Gaps = 44/389 (11%) Query: 2 SGTLL-IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60 G Y++QL+ K + ++ F I +P+HYR + + Sbjct: 80 GGCQYQGMAYKKQLSLKQRQANMLLGKFGTVLPIIGMKDPLHYRNKVHAVFAFEKGKAIA 139 Query: 61 IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIR-----------LEPLLRAKLFQIDY 109 + + T + + ++ + +A++ + +R LLR L + + Sbjct: 140 GTYQEGTHKVVPVESCLIDDEKSDAIIQTIRELLRSFKIKTYNEDSGYGLLRHVLIRRGF 199 Query: 110 LTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC-------L 162 SD+ +V L+ + + LR I + N + + Sbjct: 200 ---TSDEIMVVLVASSPVFPSKNNFVKALRKEHPEITTVILNVNDQNTSMVLGERNITLY 256 Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGN 220 + Y+ + L + ++F Q N + +L G+ G +++ YCG Sbjct: 257 GKGYIVDTLC----GHTFAISPSAFYQVNP-VQTEILYQTAMDYAGLTGKETVVDAYCGI 311 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G ++ A V+ VE+ SV+ AR N N++ N+ + ++ F M+ Sbjct: 312 GTIGIIAADKAKSVIGVELNPASVKDARNNARHNNIGNITFYQNDAERFLNEMQE----- 366 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCRDLSILSTT 338 + + IF+DPPR+G + + + P I+YISCNP++L RDL L Sbjct: 367 -------QNAKADVIFMDPPRAGSTHSFMASAISLNPDRIVYISCNPETLARDLEFLKKH 419 Query: 339 -HTIERLALFDQFPYTRHMECGVLLVRKP 366 +T E++ D FP+T HME LL R+ Sbjct: 420 QYTAEKIQPVDMFPFTTHMETVCLLTRRK 448 >gi|154503473|ref|ZP_02040533.1| hypothetical protein RUMGNA_01297 [Ruminococcus gnavus ATCC 29149] gi|153795573|gb|EDN77993.1| hypothetical protein RUMGNA_01297 [Ruminococcus gnavus ATCC 29149] Length = 464 Score = 281 bits (718), Expect = 1e-73, Method: Composition-based stats. Identities = 81/392 (20%), Positives = 145/392 (36%), Gaps = 36/392 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ---------VPNLQIFRSEPIHYRMRAEFHIW 52 + YE+QL K ++ + + + + P HYR +A+F Sbjct: 79 GCQIQQISYEKQLEFKNRKVLGNLERIGGFSPELLEKIADPIVGMEIPFHYRNKAQFPFG 138 Query: 53 HDGDD-LYHIMFDQQTKERMRIDYFMPGSLL-----------INALMIEMMATIRLEPLL 100 D + + +T + + G + +E + LL Sbjct: 139 KDKNGVTVTGFYAGRTHDIIANTDCALGVEQNQEILETILSFMEQYQMEPYDEKTGKGLL 198 Query: 101 RAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALH---ARKYQIQLIGRANK 157 R L + + T + +V + E ++ + + + + Sbjct: 199 RHVLIRYGFTTKEIMVCLVINAKKIPHCEKLVELLQKIEGMTSITISVNQKNTNVIMGDS 258 Query: 158 TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLEL 216 ++ + ++ + + + Y+ SF Q N + L A + +L Sbjct: 259 YEVLWGQAFITDYIG----EIKYQISPLSFFQVNPVQTEKLYGLALEYADLKGDETVWDL 314 Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276 YCG G SL LA++ +V VEI ++E AR N N + N K ++E + Sbjct: 315 YCGIGTISLFLAQNAKQVYGVEIIPQAIEDARKNAQINGIENAKFYVGKAEEVLPGYYAD 374 Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCRDLSI 334 K I VDPPR G +++ + MVQ P I+Y+SC+ +L RDL Sbjct: 375 YA----KAHPGEQAHADVIVVDPPRKGCEESLLETMVQMQPERIVYVSCDSATLARDLKY 430 Query: 335 LST-THTIERLALFDQFPYTRHMECGVLLVRK 365 L + + ++ DQF T H+E VLL R+ Sbjct: 431 LCGNGYELVKVRAVDQFSQTVHVETCVLLQRR 462 >gi|323451355|gb|EGB07232.1| hypothetical protein AURANDRAFT_53938 [Aureococcus anophagefferens] Length = 473 Score = 281 bits (718), Expect = 1e-73, Method: Composition-based stats. Identities = 140/384 (36%), Positives = 211/384 (54%), Gaps = 23/384 (5%) Query: 4 TLLIDQYEQQLAEKVDRLRQMMLAFQ--VPNLQIFRSEPIHYRMRAEFHIWHD----GDD 57 + Y+ QLA KV R+R ++ + S H+R R+ F +WH+ G Sbjct: 11 SCDESGYDAQLAAKVARVRALLGEVAELPETTTVVPSPKSHFRQRSNFRVWHEPEATGLG 70 Query: 58 LYHIMFDQQT--KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115 + IM+ + KE +R+ F G NALM ++A ++ P+LR K+ + + ++ Sbjct: 71 VSFIMYSPSSSDKEPLRVGDFARGDAKTNALMGPVLAALKTTPVLRDKVIECRFHSTLRG 130 Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKI-----CLDRDYVDER 170 A+V Y+R +D A + +IGR+ + +I C R V+E Sbjct: 131 GAMVLFAYNRPIDADAAWKAAA-EALAAQLGPDVVVIGRSRRVQIAVGGACPGRAQVEET 189 Query: 171 LTVAGRT---LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG----DLLELYCGNGNF 223 L + L Q+E F+QPN + ML W +AATK +G DLLELYCGNGNF Sbjct: 190 LEIPCEPPLRLELVQLEGEFSQPNGAVCERMLAWAMAATKPAEGAAPRDLLELYCGNGNF 249 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 ++ L+RHF +VLA E+ KP+ AR N A N +NV + R+S+ E +A+RR+REF RLK Sbjct: 250 TIPLSRHFRKVLATELTKPNAAVARENAAKNGRSNVVVARLSAAEVAEALRRDREFARLK 309 Query: 284 D--IDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTI 341 + +D+ +Y T+FVDPPR GLD T+ + + ++Y+SC PD+L +L L+ TH + Sbjct: 310 ELGVDLDAYDLGTLFVDPPRCGLDAPTLKLAHGFETVVYMSCGPDTLAENLHALNATHVV 369 Query: 342 ERLALFDQFPYTRHMECGVLLVRK 365 A+FDQFPYT H E GV+L R+ Sbjct: 370 ADFAVFDQFPYTDHCEVGVVLKRR 393 >gi|154482861|ref|ZP_02025309.1| hypothetical protein EUBVEN_00557 [Eubacterium ventriosum ATCC 27560] gi|149736289|gb|EDM52175.1| hypothetical protein EUBVEN_00557 [Eubacterium ventriosum ATCC 27560] Length = 463 Score = 281 bits (718), Expect = 2e-73, Method: Composition-based stats. Identities = 78/394 (19%), Positives = 148/394 (37%), Gaps = 40/394 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDG- 55 + Y++QL K +++ ++ V N + EP +YR +++F + D Sbjct: 80 GCQIQCINYKEQLRFKKNKVYNNLVRIGGQSDFVMNDVMGMDEPFNYRNKSQFPVGMDKE 139 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGSLL----------------INALMIEMMATIRLEPL 99 ++ + +T + ID G + + I + + L Sbjct: 140 GNIISGFYAGRTHSIINIDSCDLGLKIDGRDVNKEVMDTVKAFMTKYRIAPYNEVTHKGL 199 Query: 100 LRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALH---ARKYQIQLIGRAN 156 +R L +I T Q ++ + + E +L + + + Sbjct: 200 VRHVLIRIGAKTKQIMVCVIINGKNLPNKEKLVEELCKLEGMYSISLNINTKKSNVILGD 259 Query: 157 KTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLE 215 K Y+++ + + +R SF Q N + L + + + Sbjct: 260 KVINLYGPGYIEDYIG----DVKFRISPLSFFQVNPVQTEKLYNKALEYADLTGNEMVWD 315 Query: 216 LYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275 LYCG G+ SL LA+ +VL VEI ++ A+ N N +NN + ++++ Sbjct: 316 LYCGIGSISLFLAKKAKQVLGVEIVPEAIADAKINAKINGINNAEFFVGAAEDVVTEYFE 375 Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLS 333 + D + I VDPPR G D + + ++Y+SC+ +L RD+ Sbjct: 376 NHK-------DDEECKPDVIVVDPPRKGCDHKLLETIVEMNPERVVYVSCDSATLARDVK 428 Query: 334 ILST-THTIERLALFDQFPYTRHMECGVLLVRKP 366 LS + ++ + D F T H+E V L RK Sbjct: 429 WLSENGYKLKEVTPCDMFGQTTHVESVVKLHRKD 462 >gi|242241735|ref|ZP_04796180.1| TrmA family RNA methyltransferase [Staphylococcus epidermidis W23144] gi|242234825|gb|EES37136.1| TrmA family RNA methyltransferase [Staphylococcus epidermidis W23144] Length = 472 Score = 281 bits (718), Expect = 2e-73, Method: Composition-based stats. Identities = 73/389 (18%), Positives = 141/389 (36%), Gaps = 40/389 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFHIWH-DG 55 L Y QL K +++ + I P YR +++ + + Sbjct: 98 GCQLQHMTYRAQLDMKREQVVNLFHRKGPFENTIIKETIGMDNPWRYRNKSQIPVGQGNS 157 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKL 104 + + + Q++ + + +D + +N L I + L+R + Sbjct: 158 NQVIMGFYRQRSHDIIDMDSCLIQDKQHQEVMNRVKYWLNELNISIYNEKAKTGLIRHLV 217 Query: 105 FQIDYLTSQSDQAIVTL----IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKI 160 + Y T + VT LL + ++ + + ++ Sbjct: 218 VRTGYHTDEMMVIFVTNGATFKQSELLVNKLKKEFPNITSIKQNINNSHSNVIMGRQSMT 277 Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCG 219 +D ++++L+ +IY + SF Q N+ + + L + + +L+ YCG Sbjct: 278 LYGKDKIEDQLS----EVIYHISDLSFYQINSSQTEKLYQQALNYAQLTGKEIVLDTYCG 333 Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279 G L +A V VE+ +++ A N N + N +++ + Sbjct: 334 IGTIGLYMAPLAKHVYGVEVVPQAIKDAEDNATKNQLKNTTFECGKAEDVILTWKS---- 389 Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILST 337 + + VDPPR G D+ + + I+YISCNP + RD IL+ Sbjct: 390 --------QGIKPDVVMVDPPRKGCDETFLTTLLKLNPKRIIYISCNPSTQQRDAQILAE 441 Query: 338 THTIERLALFDQFPYTRHMECGVLLVRKP 366 + + + D FP T H+E L VRK Sbjct: 442 QYELVEITPVDMFPQTTHIETVALFVRKD 470 >gi|300853527|ref|YP_003778511.1| rRNA (uracil-5-)-methyltransferase [Clostridium ljungdahlii DSM 13528] gi|300433642|gb|ADK13409.1| rRNA (uracil-5-)-methyltransferase [Clostridium ljungdahlii DSM 13528] Length = 476 Score = 281 bits (718), Expect = 2e-73, Method: Composition-based stats. Identities = 74/408 (18%), Positives = 144/408 (35%), Gaps = 60/408 (14%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------------------------IF 36 L YE QL K R++ + ++ + Sbjct: 83 GCQLQHMSYEGQLDFKKKRVKDCLERIGKFEVEEQDRIFKDNVLEKSSEDTSVKLYNTLG 142 Query: 37 RSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSL-----------LINA 85 + P YR + + + + + + + E + ++ + I Sbjct: 143 MTNPYRYRNKVQLPVGKCNQKINIGFYAKASHEIIDMESCLIQDETSDKIVKFMRDWIEK 202 Query: 86 LMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDA 141 IE ++ + + + T + IVT L + + L + + ++ Sbjct: 203 YNIEPYDEKTGRGTIKHIMTRKGFATGEIMLVIVTFTENLPHKKELVELMCKNISGVKSI 262 Query: 142 LHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEW 201 +H + K +D + + + + SF Q N + Sbjct: 263 VHNINNNKTNVILGKKCVNLWGQDTIRDAIG----NFKFNISPLSFFQVNPIQTEVLYSK 318 Query: 202 VLAATKGIQGDLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK 260 L +++ + YCG G SL L++ +V VEI +++ AR N N VNNV+ Sbjct: 319 ALEYAGLSGNEVVFDAYCGTGTISLFLSQKSKKVYGVEIIDEAIKNARINAEQNGVNNVE 378 Query: 261 IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ-AYPH-I 318 + S+ + ++ + + VDPPR G D + + P + Sbjct: 379 FITGKSEVV------------IPELISKGIKADVVVVDPPRKGCDMGLLKAIADMEPRTV 426 Query: 319 LYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVRK 365 +Y+SC+P +L RDL++L + + + D F T H+E VL+ RK Sbjct: 427 VYVSCDPATLARDLAVLRELGYMTKEVQPVDMFAQTAHVETVVLMSRK 474 >gi|315645532|ref|ZP_07898656.1| RNA methyltransferase, TrmA family protein [Paenibacillus vortex V453] gi|315279010|gb|EFU42320.1| RNA methyltransferase, TrmA family protein [Paenibacillus vortex V453] Length = 532 Score = 281 bits (718), Expect = 2e-73, Method: Composition-based stats. Identities = 81/388 (20%), Positives = 138/388 (35%), Gaps = 40/388 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFHIWHDGD 56 + YE QL K D +R+ + + P YR +A+ + G Sbjct: 158 GCQIQHISYEGQLQAKTDIVREAFSRYAGREAVKFKPILGMEHPWDYRNKAQLQLKRKGH 217 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINA-----------LMIEMMATIRLEPLLRAKLF 105 ++ +++ + + I +N L I + + +R + Sbjct: 218 EVIAGLYEADSHTIVDISGCPIQHPKVNEAVEKVKSVLEELRIPLHKENGNKDGVRTIVV 277 Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD 165 + + + + +VT D +R+ I L KT + Sbjct: 278 RHGFQSGELQVTLVTAGGKLPRQD----DLVRMLRLSIPEVSGISLNINPKKTSLIFGDR 333 Query: 166 YVD----ERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWV-LAATKGIQGDLLELYCGN 220 + E + + L + +F Q N V + E V AA + +++ YCG Sbjct: 334 TISLWGAESMQESLSDLQFSLSPRAFFQLNPQQTVKLYESVRAAAGLTGKETVIDAYCGT 393 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G L LA + V +E +VE A+ N N N ++E +E Sbjct: 394 GTIGLWLAPYAKEVRGIETIPEAVEDAKANAQRNGRANASFHVGQAEELLPRWVKE---- 449 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLS-ILST 337 + I DPPR+GLD + V +Y+SCNP +L +D +L Sbjct: 450 --------GMKPDVIIADPPRTGLDSRFLETVLRTKPKRFVYVSCNPSTLAKDCKVLLDG 501 Query: 338 THTIERLALFDQFPYTRHMECGVLLVRK 365 + +E + D FP T H+EC VLL K Sbjct: 502 GYELEWVQPVDMFPQTSHVECTVLLKWK 529 >gi|329930050|ref|ZP_08283675.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Paenibacillus sp. HGF5] gi|328935449|gb|EGG31921.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Paenibacillus sp. HGF5] Length = 532 Score = 280 bits (717), Expect = 2e-73, Method: Composition-based stats. Identities = 82/388 (21%), Positives = 139/388 (35%), Gaps = 40/388 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFHIWHDGD 56 + YE QL K D +R+ + + + P YR +A+ + G Sbjct: 160 GCQIQHISYEGQLQAKTDIVREAFSRYAGLDDVKFKPILGMEHPWDYRNKAQLQLKRRGH 219 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINA-----------LMIEMMATIRLEPLLRAKLF 105 ++ +++ + + I +N L I + + +R + Sbjct: 220 EVIAGLYEADSHTIVDISGCPIQHPKVNETVEKVKSVLEELRIPLYKENGAKDGVRTIVV 279 Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD 165 + + QS + VTLI + LR + I L KT + Sbjct: 280 RHGF---QSGEVQVTLITAGSKLPRQDDLVRMLRLTIPEV-SGISLNINPKKTSLIFGDR 335 Query: 166 YVD----ERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWV-LAATKGIQGDLLELYCGN 220 + E + + L + +F Q N V + E V AA + +++ YCG Sbjct: 336 TISLWGAESMQESLSDLQFSLSPRAFFQLNPQQTVKLYESVRAAAGLTGKETVIDAYCGT 395 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G L LA + V +E +VE A+ N N N ++E +E Sbjct: 396 GTIGLWLAPYAKEVRGIETIPEAVEDAKANAQRNGRANASFHVGQAEELLPRWVKE---- 451 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLS-ILST 337 + I DPPR+GLD + V +Y+SCNP +L +D +L Sbjct: 452 --------GMKPDVIIADPPRTGLDPRFLETVLRTKPKRFVYVSCNPSTLAKDCKVLLDG 503 Query: 338 THTIERLALFDQFPYTRHMECGVLLVRK 365 + +E D FP T H+E +L+ K Sbjct: 504 GYELEWAQPVDMFPQTSHVEAVLLMKLK 531 >gi|331702034|ref|YP_004398993.1| RNA methyltransferase, TrmA family [Lactobacillus buchneri NRRL B-30929] gi|329129377|gb|AEB73930.1| RNA methyltransferase, TrmA family [Lactobacillus buchneri NRRL B-30929] Length = 456 Score = 280 bits (717), Expect = 2e-73, Method: Composition-based stats. Identities = 81/383 (21%), Positives = 149/383 (38%), Gaps = 39/383 (10%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQ---VPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHI 61 L +Y+ QL K +++ + N I +P HYR +A+ + L Sbjct: 88 LQHLKYDAQLKFKQHQIQVDFDKMKLDVTVNPTIGMDDPTHYRNKAQIPVRSINGQLQTG 147 Query: 62 MFDQQTKERMRIDYFMPGSLLINALMIEMMATI-------RLEPLLRAKLFQIDYLTSQ- 113 + + + + + I+ F I+ ++ + + E + + I Sbjct: 148 FYRKHSHDLVPIEDFYIQDPKIDEAVVVVRDILRKFRVQPYDEQTNKGVVRNIMVRRGYY 207 Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIG-------RANKTKICLDRDY 166 S + ++ LI + E + +L K +Q + K K+ + Sbjct: 208 SHEMMIVLITRTEKLPSSSEIVAEVEQSLPEVKSIVQNVNPEKTNALMGKKNKVLAGKST 267 Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSL 225 +++ L L + +SF Q N + + D+ ++ YCG G SL Sbjct: 268 IEDTLL----GLKFDISASSFYQVNPVQTEKLYDLATKKADLSADDVVIDAYCGIGTISL 323 Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285 +AR +V VEI +VE A+ N N++ NV V ++ ++ Sbjct: 324 SMARVAKQVYGVEIVPEAVEDAKKNAKLNNLTNVHFVASKAE------------TQMAKW 371 Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STTHTIE 342 + I VDPPR GLD + + V ++Y+SCNP +L RD+ + + + Sbjct: 372 QEDGLKPDVISVDPPRKGLDASLIDSVVKMQPKRVVYVSCNPATLARDVKLFTEQGYQVN 431 Query: 343 R-LALFDQFPYTRHMECGVLLVR 364 + + DQFP T H+E +L R Sbjct: 432 QPIQPVDQFPQTVHVESITVLER 454 >gi|329734762|gb|EGG71068.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus epidermidis VCU045] Length = 456 Score = 280 bits (717), Expect = 2e-73, Method: Composition-based stats. Identities = 73/389 (18%), Positives = 139/389 (35%), Gaps = 40/389 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFHIWHDGD 56 L Y QL K +++ + I P YR +++ + Sbjct: 82 GCQLQHMTYRAQLDMKREQVVNLFHRKGPFENTVIKETIGMDNPWRYRNKSQIPVGQSNS 141 Query: 57 DL-YHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKL 104 + + Q++ + + +D + +N L I + L+R + Sbjct: 142 NQVIMGFYRQRSHDIIDMDSCLIQDRQHQEVMNRVKYWLNELNISIYNEKTKTGLIRHLV 201 Query: 105 FQIDYLTSQSDQAIVTL----IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKI 160 + Y T + VT LL + ++ + H + ++ Sbjct: 202 VRTGYHTDEMMVIFVTNGATFKQSELLVNKLKKEFPNITSIKHNINNSHSNVIMGRQSMT 261 Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCG 219 +D ++++L+ + Y + SF Q N+ + + L + + +L+ YCG Sbjct: 262 LYGKDKIEDQLS----EVTYHISDLSFYQINSSQTEKLYQQALNYAQLTGKEIVLDTYCG 317 Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279 G L +A V VE+ +++ A N N + N +++ + Sbjct: 318 IGTIGLYMAPLAKHVYGVEVVPQAIKDAEDNATKNQLKNTTFECGKAEDVILTWKS---- 373 Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILST 337 + + VDPPR G D+ + + I+YISCNP + RD IL+ Sbjct: 374 --------QGIKPGVVMVDPPRKGCDETFLTTLLKLNPKRIVYISCNPSTQQRDAQILAE 425 Query: 338 THTIERLALFDQFPYTRHMECGVLLVRKP 366 + + + D FP T H+E L VRK Sbjct: 426 QYELVEITPVDMFPQTTHIETVALFVRKD 454 >gi|323351306|ref|ZP_08086962.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis VMC66] gi|322122530|gb|EFX94241.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis VMC66] Length = 469 Score = 280 bits (717), Expect = 2e-73, Method: Composition-based stats. Identities = 83/387 (21%), Positives = 162/387 (41%), Gaps = 46/387 (11%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAF-QVPNLQI----FRSEPIHYRMRAEFHIWHDGDDLY 59 L Y QL K +++ + + ++++ +P+ YR +A+ + L Sbjct: 96 LGHLNYPAQLDFKRKQVKDSLYKIAGLSDVEVLPTLGMEQPLGYRNKAQVPVRRVNGQLE 155 Query: 60 HIMFDQQTKERMRIDYFMPGSLLINALMI---EMMATIRLEP--------LLRAKLFQID 108 F + + + + I+ F +I+ ++I +++ L+P L+R + + Sbjct: 156 TGFFRKNSHDLLPIEDFYIQDPVIDQVIIFTRDLLRRFDLKPYDEQEKTGLIRNLVVRRG 215 Query: 109 YLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIG-------RANKTKIC 161 + + + +V L+ R + RL +A A K +Q I + Sbjct: 216 HYSG---EIMVILVTTRPKIFRVEQLMERLTEAFPAIKSIMQNINDQPGNAIFGKDWRTL 272 Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGN 220 +DY+ +R+ ++ +F Q N + + + + ++ D+ L+ Y G Sbjct: 273 YGQDYITDRMLGND----FQISGPAFYQVNTEMAEKLYQTAIDFSELTSDDVVLDAYSGI 328 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G L +A+H V VE+ +VE ++ N A N + N V ++E Q +E Sbjct: 329 GTIGLSVAKHVKEVYGVEVIPEAVENSQKNAAINGITNASYVCAPAEEAIQNWLKE---- 384 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGM-VQAYP-HILYISCNPDSLCRDLSILST- 337 + I VDPPR GL ++ + + P I YISCN ++ RD+ + Sbjct: 385 --------GIQADVILVDPPRKGLTESFIKASISMEPKKITYISCNVATMARDIKLYREL 436 Query: 338 THTIERLALFDQFPYTRHMECGVLLVR 364 + ++++ D FP T H+E LLVR Sbjct: 437 GYELKKVQPVDLFPQTHHVETVSLLVR 463 >gi|299537400|ref|ZP_07050696.1| putative RNA methyltransferase [Lysinibacillus fusiformis ZC1] gi|298727135|gb|EFI67714.1| putative RNA methyltransferase [Lysinibacillus fusiformis ZC1] Length = 459 Score = 280 bits (717), Expect = 2e-73, Method: Composition-based stats. Identities = 87/390 (22%), Positives = 153/390 (39%), Gaps = 41/390 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54 L YE+QL EK D + Q + + P L+ + +P HYR +++F + + Sbjct: 85 GCQLQHMTYEKQLIEKRDIVIQALERYAKPLLETIEVRKTLGMDDPWHYRNKSQFQVRKE 144 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGS-----------LLINALMIEMMATIRLEPLLRAK 103 G +Y +F + + + + I+ + ++ L I + L L+R Sbjct: 145 GKRVYAGLFAEGSNKLLNINDCLVQHPITSKITVATRKILQKLNITIYDGRTLNGLVRTI 204 Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD 163 + + T ++ +VT R E R++ + Q I R KT + Sbjct: 205 VVRTGIRTGETQVVLVT---TRKEIPHLAELITRMKKIDPSIVSIAQNINR-EKTSLIFG 260 Query: 164 RDYV----DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELYC 218 + V E + L + +F Q N VH+ + + AA + +++ YC Sbjct: 261 DETVVLDGKETIHEELGELAFDLSARAFFQLNPTQTVHLYDEIKKAAALSGKETVVDAYC 320 Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278 G G L LA V +++ S++ AR N + + K +++ +E Sbjct: 321 GVGTIGLWLADKAKEVRGMDVIPESIQDARKNARNHGFKHTKYAVGTAESVLAKWCKE-- 378 Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILS 336 + I VDPPR+GL + V +Y SCNP +L +DL L+ Sbjct: 379 ----------GFTPDVITVDPPRTGLAPEFIRTVLKLKPKRFVYTSCNPSTLAKDLQQLT 428 Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVRKP 366 + +E + D F T +EC LV K Sbjct: 429 KLYDVEYIQPVDMFAQTAQVECVAKLVLKN 458 >gi|297622046|ref|YP_003710183.1| 23S rRNA (Uracil-5-)-methyltransferase [Waddlia chondrophila WSU 86-1044] gi|297377347|gb|ADI39177.1| 23S rRNA (Uracil-5-)-methyltransferase [Waddlia chondrophila WSU 86-1044] Length = 441 Score = 280 bits (717), Expect = 2e-73, Method: Composition-based stats. Identities = 75/381 (19%), Positives = 149/381 (39%), Gaps = 37/381 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-VPNLQIFR----SEPIHYRMRAEFHIWHDGD 56 ++ Y QL K R+ + ++++ P+ YR + + I + Sbjct: 80 GCQVMHLNYSSQLERKRQRVVDAFERIGKLMDVEVLPCVPSPLPLKYRNKVQAPIRQKKE 139 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----LRAKLFQIDYLTS 112 L + + + + +D L + +A ++ + LR + + T Sbjct: 140 GLSIGFYARNSHHLVDVDLCYIHCALGQRVYERSVALLKSSGISKEKLRHLIIKTAVKTE 199 Query: 113 QSDQAIVTLIYHRL----LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVD 168 Q+ IVT + L + + ++ + + + ++ + +++ Sbjct: 200 QALVVIVTGTDQKKSLARLAEEIQRQCPEVKGVIQNVNPHLHNVVLGKTFEVLSGQGWME 259 Query: 169 ERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVL 227 E + L + SF Q N + V+ + G+ +L+ YCG G SL+L Sbjct: 260 EEIL----DLRFYVSPASFFQVNPAQAEQLYRQVIDWAELKGGERVLDAYCGVGTLSLLL 315 Query: 228 ARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDI 287 AR RV+ VE ++ A N + N + NV V ++++ Q+ Sbjct: 316 ARKAGRVVGVECVPQAIADAERNASLNCLANVSFVCAEAEKWIQS--------------- 360 Query: 288 HSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILST-THTIERL 344 + R + ++PPR G + + ++Y+SC+P +L RDL++L + I+ Sbjct: 361 -AERMDLVVLNPPRKGCHPEMIKAIGKMRPTRLIYVSCDPATLARDLAMLQESGYKIDGA 419 Query: 345 ALFDQFPYTRHMECGVLLVRK 365 FD FP T H+E V L K Sbjct: 420 CPFDMFPQTAHVETVVKLSTK 440 >gi|168178950|ref|ZP_02613614.1| 23S rRNA -methyltransferase RumA [Clostridium botulinum NCTC 2916] gi|182670032|gb|EDT82008.1| 23S rRNA -methyltransferase RumA [Clostridium botulinum NCTC 2916] Length = 461 Score = 280 bits (717), Expect = 2e-73, Method: Composition-based stats. Identities = 76/387 (19%), Positives = 145/387 (37%), Gaps = 37/387 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54 + Y+ QL K R+ + ++ I P YR + + + + Sbjct: 85 GCQVQHYSYKAQLEFKKQRVIDSLERIGKLDIDKIKIEDTIGMENPYRYRNKIQMPVRFE 144 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGSL-------LINALMIEMMATIRLEPLLRAKLFQI 107 ++ + +T E + +I M++ + E + + I Sbjct: 145 KGEIKIGFYKSRTHEVADVKECFIQDEQADKIIQIIRNWMVKHNISAYNEETGKGFIRHI 204 Query: 108 DYLTSQSDQAIVTLIYHRLLDDA--WRECAIRLRDALHARKYQIQLIGRANKTKICLDRD 165 + ++ ++ +I ++ E + K IQ I KT + L Sbjct: 205 MVRKAFKNKELMLVIVTNKEEEIPYKEELINEVIKEFSNIKSIIQNINT-KKTNVILGEK 263 Query: 166 ----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGN 220 + + +T + SF Q N + + L + + + YCG Sbjct: 264 CITLWGKDTITDYIDKFKFNISPLSFFQVNPIQTEVLYKKALEFANLKGEEIVFDAYCGT 323 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G SL L++ +V VEI K +++ A+ N N ++N + S+E Sbjct: 324 GTISLFLSQKAKKVYGVEIIKEAIDNAKDNAKENRIDNAEFFVGKSEEV----------- 372 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILST- 337 + D+ + + + VDPPR G + + + A I+Y+SC+P +L RDL IL+ Sbjct: 373 -IPDLIDKGIKAEVVVVDPPRKGCEKTLLEAIAATKPKRIVYVSCDPGTLARDLGILNGL 431 Query: 338 THTIERLALFDQFPYTRHMECGVLLVR 364 + + + D FP T H+E VL+ R Sbjct: 432 GYETKEVQPVDMFPQTSHVETIVLIQR 458 >gi|240145247|ref|ZP_04743848.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Roseburia intestinalis L1-82] gi|257202710|gb|EEV00995.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Roseburia intestinalis L1-82] Length = 621 Score = 280 bits (717), Expect = 2e-73, Method: Composition-based stats. Identities = 95/396 (23%), Positives = 161/396 (40%), Gaps = 44/396 (11%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAE--FHIWHDGDDLYHIMFDQQ 66 YE+QL EK + +R+ + F I P HYR + F I G + ++ Sbjct: 135 SYEKQLKEKQEYVRKNVGEFCRVLPIIGMEHPYHYRNKVHAVFDIA-KGGSVISGVYKAG 193 Query: 67 TKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115 T + + ID L+ + I+ LLR L + + S Sbjct: 194 THDVVNIDSCRIEDETADAIIRDIRGLLRSFKIKTYDEDTGYGLLRHVLVRRGF---HSG 250 Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTK--------ICLDRDYV 167 + +V L+ + + LR LH + L KT + + Y+ Sbjct: 251 EVMVVLVLGSPILPSKNNFVKALR-KLHPEITTVVLNVNDKKTSMVLGEKETVIYGKGYI 309 Query: 168 DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNFSLV 226 ++ L +R SF Q N + + A + +++ YCG G L+ Sbjct: 310 EDTLC----GCTFRISPKSFYQVNPVQTEILYTKAIEYAGLTGKERIVDAYCGIGTIGLI 365 Query: 227 LARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM---RREREFNRLK 283 A V++VE+ + +V A N N + NV+ + +F M R +++ N++ Sbjct: 366 AASKAKEVISVELNRDAVRDAVTNAKRNDIKNVQFYNADAGQFMVEMAEYRADQKKNQVP 425 Query: 284 DIDIHSYRF------KTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL 335 D + +F+DPPR+G D+A + V A ++YISCN ++L RDL L Sbjct: 426 DATKSGKKATPDGNVDVVFMDPPRAGSDEAFLSSVIRLAPKRVVYISCNLETLARDLKYL 485 Query: 336 ST-THTIERLALFDQFPYTRHMECGVLLV-RKPSGW 369 + + + D FP+T+H+E VLL +KP G Sbjct: 486 TKHGYQAKECQPVDLFPWTKHVETVVLLSHKKPDGH 521 >gi|238917769|ref|YP_002931286.1| hypothetical protein EUBELI_01850 [Eubacterium eligens ATCC 27750] gi|238873129|gb|ACR72839.1| Hypothetical protein EUBELI_01850 [Eubacterium eligens ATCC 27750] Length = 484 Score = 280 bits (716), Expect = 2e-73, Method: Composition-based stats. Identities = 82/409 (20%), Positives = 155/409 (37%), Gaps = 53/409 (12%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFHIWH-DG 55 + Y+ QL K + + I EP YR +A++ + Sbjct: 81 GCQIQQMSYQAQLRFKEKLVDDNLKRIGKIEGYEFFPAIGMEEPFRYRNKAQYPVGTAKD 140 Query: 56 DDLYHIMFDQQTKERMRIDYFMPG---SLLINALMIEMMATIRLEP--------LLRAKL 104 + + +T + G + I A++ M + P L+R L Sbjct: 141 GSVVMGFYAGRTHSIISCTDCKIGAVENQYILAVIKSWMELNGVAPYDEQTRKGLVRHVL 200 Query: 105 FQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIR----------------LRDALHARKYQ 148 + + T + +V I + D +E + ++ + + Sbjct: 201 IRTGFHTDEIMVCLV--INGTKMSDKLKESLVGRLTEVSLDSDISTDKCIKSIMLNYNTE 258 Query: 149 IQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKG 208 + + + + Y+++ + + Y+ SF Q N + L G Sbjct: 259 NTNVILGRQCETLWGKSYIEDYIG----DIKYQISPLSFFQVNPRQTEKLYGKALE-YAG 313 Query: 209 IQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266 + G+ + +LYCG G SL LA++ +V VEI ++E A+ N A N ++N + + Sbjct: 314 LTGNETVWDLYCGIGTISLFLAKNARKVYGVEIVPQAIEDAKNNAAINGIDNAEFFVGKA 373 Query: 267 KEFTQAMRREREF--------NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYP 316 +E E ++ S + VDPPR G D++ + + + Sbjct: 374 EEVVPHFYEEMARLATDTSATEAQREEARKSITPDVVVVDPPRKGCDESLLDTIVKMSPE 433 Query: 317 HILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364 I+Y+SC+ +L RDL +L + + ++ DQF +T H+EC LLVR Sbjct: 434 RIVYVSCDSATLARDLGLLAAKGYKTVKVQPVDQFSHTVHVECVCLLVR 482 >gi|57242357|ref|ZP_00370296.1| tRNA (uracil-5-)-methyltransferase [Campylobacter upsaliensis RM3195] gi|57017037|gb|EAL53819.1| tRNA (uracil-5-)-methyltransferase [Campylobacter upsaliensis RM3195] Length = 354 Score = 280 bits (716), Expect = 3e-73, Method: Composition-based stats. Identities = 125/352 (35%), Positives = 203/352 (57%), Gaps = 11/352 (3%) Query: 15 AEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWH-DGDDLYHIMFDQQTKERMRI 73 +K+ +++ F ++F S H+R R E +H + ++++ MF+ + K + Sbjct: 6 EQKILEAKELFKPFYKGEFELFSSPTSHFRTRVELSFFHSEDGEIFYAMFNGRKKYIVEN 65 Query: 74 DYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRE 133 F+ I LM +++ + + L+ KLF +++L S+ + + VTL+YH+ + Sbjct: 66 LDFV--DEKICLLMPKLLKALNDDNTLKNKLFGVEFLASKKELS-VTLLYHKDISTLKEN 122 Query: 134 CAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAG 193 A AR + LI R+ K+ ++ + + L + G + Y + F QPN Sbjct: 123 LANL------ARNLNLNLIARSKGKKLVFGKENLRQVLDIKGEAIHYEFDNDCFIQPNTY 176 Query: 194 INVHMLEWVLAAT-KGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIA 252 IN M+EWVL + DLLELYCG GNF+L LA F ++LA E++K ++ A N Sbjct: 177 INEKMIEWVLKQISTEEKNDLLELYCGYGNFTLALASSFKQILATELSKKNIAYALKNCT 236 Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312 N+ N++ R+SS+E ++A+++EREF RLKDID+ S+ F I +DPPR+GL+++ + + Sbjct: 237 LNNATNIRFARLSSEELSKALKKEREFFRLKDIDLDSFHFSHILLDPPRAGLEESVIELA 296 Query: 313 QAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 Q Y HI+YISCNP SL +L+ L+ THTI ALFDQF T H+E GV+L + Sbjct: 297 QNYHHIIYISCNPTSLKENLTKLTKTHTITNFALFDQFALTPHLESGVILKK 348 >gi|332366968|gb|EGJ44708.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis SK1059] Length = 469 Score = 280 bits (716), Expect = 3e-73, Method: Composition-based stats. Identities = 77/384 (20%), Positives = 152/384 (39%), Gaps = 40/384 (10%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQV-----PNLQIFRSEPIHYRMRAEFHIWHDGDDLY 59 L Y QL K +++ + + +P+ YR +A+ + L Sbjct: 96 LGHLNYPAQLDFKRKQVKDSLYKIAGLSDVEVPPTLGMEQPLGYRNKAQVPVRRVNGQLE 155 Query: 60 HIMFDQQTKERMRIDYFMPGSLLINALMI---EMMATIRLEP--------LLRAKLFQID 108 F + + + + I+ F +I+ +++ +++ L+P L+R + + Sbjct: 156 TGFFRKNSHDLLPIEDFYIQDPIIDQVILFTRDLLRRFDLKPYDEQEKTGLIRNLVVRRG 215 Query: 109 YLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR 164 + + + +VT + L D E ++ + Q + + Sbjct: 216 HYSGEIMVILVTTRPKIFRVEQLMDRLTEAFPAIKSIMQNINDQPGNAIFGKDWRTLYGQ 275 Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNF 223 DY+ +R+ ++ +F Q N + + + + ++ D+ L+ Y G G Sbjct: 276 DYITDRMLGND----FQISGPAFYQVNTEMAEKLYQTAIDFSELTSDDVVLDAYSGIGTI 331 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 L +A+ +V VE+ +VE +R N A N + N V ++E Q +E Sbjct: 332 GLSVAKQVKQVYGVEVIPEAVENSRKNAAINGITNASYVCAPAEEAIQNWLKE------- 384 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGM--VQAYPHILYISCNPDSLCRDLSILST-THT 340 + I VDPPR GL ++ + I YISCN ++ RD+ + + Sbjct: 385 -----GIQADVILVDPPRKGLTESFIKASVSMKPKKITYISCNVATMARDIKLYQELGYE 439 Query: 341 IERLALFDQFPYTRHMECGVLLVR 364 ++++ D FP T H+E LLVR Sbjct: 440 LKKVQPVDLFPQTHHVEAVSLLVR 463 >gi|258508017|ref|YP_003170768.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus rhamnosus GG] gi|257147944|emb|CAR86917.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus rhamnosus GG] gi|259649345|dbj|BAI41507.1| RNA methyltransferase [Lactobacillus rhamnosus GG] Length = 455 Score = 279 bits (715), Expect = 3e-73, Method: Composition-based stats. Identities = 89/381 (23%), Positives = 159/381 (41%), Gaps = 38/381 (9%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPN---LQIFRSEPIHYRMRAEFHIWHDGDDLYHI 61 L I Y QL K +++++ + I P+ YR +A+ + +L Sbjct: 87 LSILAYPAQLKFKQHQIQELYKKAHLAIKVLPTIGMKHPLGYRNKAQVPVRLVRGELQTG 146 Query: 62 MFDQQTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKLFQIDYL 110 + + + + + I+ F+ + I+ ++ + +R ++R + + Sbjct: 147 FYKKHSHDLVPIEDFLIQNPKIDQAIVVVRDLLRKYRVPPYDERTNRGVIRNIMVRRGRA 206 Query: 111 TSQSDQAIVTLIYHRL-LDDAWRECAIRLRDALHAR---KYQIQLIGRANKTKICLDRDY 166 T Q +V + L+D +E + L + + + K+K RDY Sbjct: 207 THQMMIVLVARTWQVPHLNDIVKEITLALPEVTSVVVNLNDKRTNVILGRKSKTIYGRDY 266 Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSL 225 + ++L + ++ SF Q N + + A + +++ Y G G SL Sbjct: 267 LLDKLLGSE----FQISPVSFYQVNPIQTEVLYTKAIEAAGLTGKETVIDAYSGIGTISL 322 Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285 +ARH +V VE+ + +V A N A NH+ NV +++ Q + KD Sbjct: 323 TMARHAKQVYGVEVVESAVHDAEANAARNHIKNVTFEVGKAEDVMQ---------KWKDA 373 Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST-THTIE 342 D+ + VDPPR GLD + V P I+YISCNP +L RDL +L+ +T + Sbjct: 374 DLP---VDVLMVDPPRKGLDKTFIDAVGYMKPPKIVYISCNPATLARDLQLLAAFGYTAK 430 Query: 343 RLALFDQFPYTRHMECGVLLV 363 D FP T+H+E LL Sbjct: 431 ETQPVDMFPQTQHIESVTLLE 451 >gi|237809371|ref|YP_002893811.1| RNA methyltransferase, TrmA family [Tolumonas auensis DSM 9187] gi|237501632|gb|ACQ94225.1| RNA methyltransferase, TrmA family [Tolumonas auensis DSM 9187] Length = 447 Score = 279 bits (715), Expect = 3e-73, Method: Composition-based stats. Identities = 79/384 (20%), Positives = 155/384 (40%), Gaps = 37/384 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLA---FQVPNLQIFRSEPIHYRMRAEFHIWHDGDDL 58 L Y +QL K ++ + + SEP+ +R +A + + + + Sbjct: 79 GCQLSHLSYAEQLKLKQQQVIDALQRKGISNPVESCLGMSEPLAFRNKAVYAVRSENGEP 138 Query: 59 YHIMFDQQTKERMRIDYFM---PGSLLINALMIEMMATIRLEPL--------LRAKLFQI 107 + + + + + I P + I A + + M + + LR + + Sbjct: 139 QIGFYRKNSHQVIDIAACPVQHPQTTEIIAAIRQWMKDLHIAGYDEANHAGCLRYVMIRH 198 Query: 108 DYLTSQSDQAIVTLIYHRLLDDAWRECAIR---LRDALHARKYQIQLIGRANKTKICLDR 164 + T+ +VTL + + + +H + ++ ++C Sbjct: 199 GFKTNACMVVLVTLTDELPGEAELLQYLTAGGNIDSVIHNINPERVNRILGSQQRVCYGA 258 Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNF 223 + +++ L L + +SF Q N + L A ++++YCG G Sbjct: 259 EAIEDELH----GLTFSISAHSFYQVNPQQTDQLYATALQFAELKGDETVVDIYCGIGTI 314 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 SL LA+ +V+ +E+ ++E AR N N ++N + ++E A+ Sbjct: 315 SLYLAQEASKVIGIEVVSQAIEDARSNAKRNQLDNTEFYVGKAEEVVPALYA-------- 366 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILST-THT 340 R + VDPPR G + A + + A I+Y+SC+PDSL RDL++L + Sbjct: 367 ----QGLRADVVVVDPPRKGCELAVLNTMAAMTPERIVYVSCDPDSLARDLAVLQQAGYA 422 Query: 341 IERLALFDQFPYTRHMECGVLLVR 364 I ++ D FP++ H+E V L+R Sbjct: 423 ITKVQPVDMFPHSMHVETVVQLIR 446 >gi|319399862|gb|EFV88109.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus epidermidis FRI909] Length = 456 Score = 279 bits (715), Expect = 3e-73, Method: Composition-based stats. Identities = 73/389 (18%), Positives = 141/389 (36%), Gaps = 40/389 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFHIWH-DG 55 L Y QL K +++ + I P YR +++ + + Sbjct: 82 GCQLQHMTYRAQLDMKREQVVNLFHRKGPFENTIIKETIGMDNPWRYRNKSQIPVGQGNS 141 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKL 104 + + + Q++ + + +D + +N L I + L+R + Sbjct: 142 NQVIMGFYRQRSHDIIDMDSCLIQDKQHQEVMNRVKYWLNELNISIYNEKAKTGLVRHLV 201 Query: 105 FQIDYLTSQSDQAIVTL----IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKI 160 + Y T + VT LL + ++ + + ++ Sbjct: 202 VRTGYHTDEMMVIFVTNGATFKQSELLVNKLKKEFPNITSIKQNINNSHSNVIMGRQSMT 261 Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCG 219 +D ++++L+ +IY + SF Q N+ + + L + + +L+ YCG Sbjct: 262 LYGKDKIEDQLS----EVIYHISDLSFYQINSSQTEKLYQQALNYAQLTGKEIVLDTYCG 317 Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279 G L +A V VE+ +++ A N N + N +++ + Sbjct: 318 IGTIGLYMAPLAKHVYGVEVVPQAIKDAEDNATKNQLKNTTFECGKAEDVILTWKS---- 373 Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILST 337 + + VDPPR G D+ + + I+YISCNP + RD IL+ Sbjct: 374 --------QGIKPDLVMVDPPRKGCDETFLTTLLKLNPKRIVYISCNPSTQQRDAQILAE 425 Query: 338 THTIERLALFDQFPYTRHMECGVLLVRKP 366 + + + D FP T H+E L VRK Sbjct: 426 QYELVEITPVDMFPQTTHIETVALFVRKD 454 >gi|167464623|ref|ZP_02329712.1| TRNA (uracil-5-)-methyltransferase-related protein [Paenibacillus larvae subsp. larvae BRL-230010] gi|322381560|ref|ZP_08055534.1| RNA methyltransferase-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321154454|gb|EFX46756.1| RNA methyltransferase-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 550 Score = 279 bits (715), Expect = 3e-73, Method: Composition-based stats. Identities = 81/357 (22%), Positives = 135/357 (37%), Gaps = 41/357 (11%) Query: 30 VPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINA---- 85 + + SEP YR +++ + L + Q + + ++ + + Sbjct: 210 TVHPTLGMSEPWRYRNKSQVPFGEEEGGLIGGFYAQGSHRIIDMETCLIQHEQNDDVVRI 269 Query: 86 -------LMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRL 138 L I LLR + + + T + +VT + W + Sbjct: 270 VKETGTHLGINAYNETNHTGLLRHVVVKYGFRTGELMIVLVTNGKRIPHAEQW---ITAI 326 Query: 139 RDALHARKYQIQLIGRAN-------KTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPN 191 R+ L A + Q I A +TK+ R E + + + SF Q N Sbjct: 327 REKLPAVQSICQNINMARTNVIFGDETKVLWGR----EVIYDYIGDVKFAISPRSFYQVN 382 Query: 192 AGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN 250 + L I + +++ YCG G SL LA+H +V VEI ++E A+ N Sbjct: 383 PVQTEVLYRKTLEYAGLIGKETVVDAYCGIGTISLFLAKHARKVYGVEIVPEAIEDAKRN 442 Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310 N V+N + ++E +R R I VDPPR G D + Sbjct: 443 AELNGVSNAEFAAGKAEEVLPGWQRA------------GVRPDVIVVDPPRKGCDAVLLD 490 Query: 311 MV--QAYPHILYISCNPDSLCRDLSILS-TTHTIERLALFDQFPYTRHMECGVLLVR 364 + ++Y+SCN +L RDL +L + + D FP+T H+EC VL+ R Sbjct: 491 TILRLRPERVVYVSCNASTLARDLRVLEDGGYRTVEVQPVDMFPHTVHVECVVLMSR 547 >gi|322372576|ref|ZP_08047112.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus sp. C150] gi|321277618|gb|EFX54687.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus sp. C150] Length = 451 Score = 279 bits (715), Expect = 4e-73, Method: Composition-based stats. Identities = 79/382 (20%), Positives = 153/382 (40%), Gaps = 40/382 (10%) Query: 7 IDQYEQQLAEKVDRLRQMMLAF-QVPNLQI----FRSEPIHYRMRAEFHIWHDGDDLYHI 61 YE+QL K ++ + + ++++ P YR +A+ + L Sbjct: 85 HMNYEEQLKFKRKQVVDNLYKTAGISDVEVAETLGMETPYAYRNKAQVPVRRVKGQLETG 144 Query: 62 MFDQQTKERMRIDYFMPGSLLINALMI---EMMATIRLEP--------LLRAKLFQIDYL 110 + + + + + I+ F+ I+ L++ +++ L+P L+R + + + Sbjct: 145 FYRKNSHDLIPIEDFLIQDKEIDKLIVFVRDLLRRYDLKPYDEKEQTGLIRHLVVRRGHY 204 Query: 111 TSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD----Y 166 + Q VT R + ++ +A IQ I N T ++ Y Sbjct: 205 SGQMMLVFVT---TRPKIFRIDQVIAKITEAFPNVVSIIQNINDKN-TNAIFGKEFRTLY 260 Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATK-GIQGDLLELYCGNGNFSL 225 + +T + Y SF Q N + + + + + +++ Y G G L Sbjct: 261 GQDTITDSMLGNDYEISAQSFYQVNTEMAEKLYQTAIDFSDLNSDSIVIDAYSGIGTIGL 320 Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285 A+ V VE+ + +VE A+ N N + N V S++ ++ Sbjct: 321 SFAKQVKEVYGVEVIETAVEDAKKNAERNGITNAHYVADSAENAMAKWSKD--------- 371 Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGM-VQAYP-HILYISCNPDSLCRDLSILST-THTIE 342 + I VDPPR GL ++ + V P I Y+SCNP ++ RD+ + + ++ Sbjct: 372 ---GIKPDVIIVDPPRKGLTESFIKASVAMQPEKITYVSCNPATMARDIKLYQELGYELK 428 Query: 343 RLALFDQFPYTRHMECGVLLVR 364 ++ D FP T H+EC LLV+ Sbjct: 429 KVQPVDLFPQTHHVECVALLVK 450 >gi|293367789|ref|ZP_06614438.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus epidermidis M23864:W2(grey)] gi|291318128|gb|EFE58525.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus epidermidis M23864:W2(grey)] Length = 487 Score = 279 bits (714), Expect = 4e-73, Method: Composition-based stats. Identities = 72/389 (18%), Positives = 138/389 (35%), Gaps = 40/389 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFHIWHDGD 56 L Y QL K +++ + I P YR +++ + Sbjct: 113 GCQLQHMTYRAQLDMKREQVVNLFHRKGPFENTVIKETIGMDNPWRYRNKSQIPVGQSNS 172 Query: 57 DL-YHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKL 104 + + Q++ + + +D + +N L I + L+R + Sbjct: 173 NQVIMGFYRQRSHDIIDMDSCLIQDRQHQEVMNRVKYWLNELNISIYNEKTKTGLIRHLV 232 Query: 105 FQIDYLTSQSDQAIVTL----IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKI 160 + Y T + VT LL + ++ + + ++ Sbjct: 233 VRTGYHTDEMMVIFVTNGATFKQSELLVNKLKKEFPNITSIKQNINNSHSNVIMGRQSMT 292 Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCG 219 +D ++++L+ + Y + SF Q N+ + + L + + +L+ YCG Sbjct: 293 LYGKDKIEDQLS----EVTYHISDLSFYQINSSQTEKLYQQALNYAQLTGKEIVLDTYCG 348 Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279 G L +A V VE+ +++ A N N + N +++ + Sbjct: 349 IGTIGLYMAPLAKHVYGVEVVPQAIKDAEDNATKNQLKNTTFECGKAEDVILTWKS---- 404 Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILST 337 + + VDPPR G D+ + + I+YISCNP + RD IL+ Sbjct: 405 --------QGIKPGVVMVDPPRKGCDETFLTTLLKLNPKRIVYISCNPSTQQRDAQILAE 456 Query: 338 THTIERLALFDQFPYTRHMECGVLLVRKP 366 + + + D FP T H+E L VRK Sbjct: 457 QYELVEITPVDMFPQTTHIETVALFVRKD 485 >gi|160937669|ref|ZP_02085029.1| hypothetical protein CLOBOL_02559 [Clostridium bolteae ATCC BAA-613] gi|158439314|gb|EDP17066.1| hypothetical protein CLOBOL_02559 [Clostridium bolteae ATCC BAA-613] Length = 459 Score = 279 bits (714), Expect = 4e-73, Method: Composition-based stats. Identities = 88/400 (22%), Positives = 148/400 (37%), Gaps = 52/400 (13%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQV-PNLQI------FRSEPIHYRMRAEFHIWHD 54 L YE+QL K ++ ++ +I EP YR +A+F D Sbjct: 79 GCQLQAMSYEEQLKFKERKVMNNLIRIGKFAEDEIHMLPIMGMEEPWRYRNKAQFPFGKD 138 Query: 55 GDDL-YHIMFDQQTKERMRIDYFMPGSLL-----------INALMIEMMATIRLEPLLRA 102 D + +T + + + G + + IE + + L+R Sbjct: 139 KDGNVIAGFYAGRTHAIVEAEDCLLGVEENREILDIVKRFMKEMKIEPYDELSHKGLVRH 198 Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARK-----YQIQLIGRANK 157 L + + T + +V + RL + L I K Sbjct: 199 VLIRKGFKTGEIMVCLVINGNKLPSKE-------RLVEMLTGGDGVKGMTSISYSVNQEK 251 Query: 158 TKICLDRD----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD- 212 T + + ++ Y +T + Y+ SF Q N + L G+ G+ Sbjct: 252 TNVIMGKEIVNLYGPGYITDYIGNVKYQISPLSFYQVNPVQTERLYGTALE-YAGLTGNE 310 Query: 213 -LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271 + +LYCG G SL LA+ +V VEI +++ AR N N ++N + ++E Sbjct: 311 IVWDLYCGIGTISLFLAQKAQKVYGVEIVSQAIKDARRNAEINGIHNAEFFVGKAEEVLP 370 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLC 329 + + I VDPPR G D + + ++Y+SC+ +L Sbjct: 371 -----------EQFEKKHVHADVIVVDPPRKGCDAVCLDTILKMRPERVVYVSCDSATLA 419 Query: 330 RDLSILS-TTHTIERLALFDQFPYTRHMECGVLLVRKPSG 368 RDL L+ + +ER D FP T H+E V L RK +G Sbjct: 420 RDLRYLADGGYVVERGKCCDMFPGTVHVETVVELSRKTNG 459 >gi|327461108|gb|EGF07441.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis SK1057] Length = 464 Score = 279 bits (714), Expect = 4e-73, Method: Composition-based stats. Identities = 82/387 (21%), Positives = 158/387 (40%), Gaps = 46/387 (11%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQV-----PNLQIFRSEPIHYRMRAEFHIWHDGDDLY 59 L Y QL K +++ + + +P+ YR +A+ + L Sbjct: 96 LGHLNYPAQLDFKRKQVKDSLYKIAGLSDVEVPPTLGMEQPLGYRNKAQVPVRRVNGQLE 155 Query: 60 HIMFDQQTKERMRIDYFMPGSLLINALMI---EMMATIRLEP--------LLRAKLFQID 108 F + + + + I+ F +I+ +++ +++ L+P L+R + + Sbjct: 156 TGFFRKNSHDLLPIEDFYIQDPVIDQVILFTRDLLRRFDLKPYDEQEKTGLIRNLVVRRG 215 Query: 109 YLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIG-------RANKTKIC 161 + + + +V L+ R + RL +A A K +Q I + Sbjct: 216 HYSG---EIMVILVTTRPKIFRVEQLMERLTEAFPAIKSIMQNINDQPGNAIFGKDWRTL 272 Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGN 220 +DY+ +++ ++ +F Q N + + + + ++ D+ L+ Y G Sbjct: 273 YGQDYITDQMLGND----FQISGPAFYQVNTEMAEKLYQTAIDFSELTTDDVVLDAYSGI 328 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G L +A+ V VE+ +VE +R N A N + N V ++E Q +E Sbjct: 329 GTIGLSVAKQVKEVYGVEVIPEAVENSRKNAAINGITNASYVCAPAEEAIQNWLKE---- 384 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGM-VQAYP-HILYISCNPDSLCRDLSILST- 337 + I VDPPR GL ++ + V P I YISCN ++ RD+ + Sbjct: 385 --------GIQADVILVDPPRKGLTESFIKASVSMEPKKITYISCNVATMARDIKLYQEL 436 Query: 338 THTIERLALFDQFPYTRHMECGVLLVR 364 + ++++ D FP T H+EC LLV+ Sbjct: 437 GYELKKVQPVDLFPQTHHVECVALLVK 463 >gi|332361995|gb|EGJ39797.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis SK49] Length = 466 Score = 279 bits (714), Expect = 4e-73, Method: Composition-based stats. Identities = 82/389 (21%), Positives = 160/389 (41%), Gaps = 46/389 (11%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQV-----PNLQIFRSEPIHYRMRAEFHIWHDGDDLY 59 L Y QL K +++ + + +P+ YR +A+ + L Sbjct: 96 LGHLNYPAQLDFKRKQVKDSLYKIAGLSDVEVPPTLGMEQPLGYRNKAQVPVRRVNGQLE 155 Query: 60 HIMFDQQTKERMRIDYFMPGSLLINALMI---EMMATIRLEP--------LLRAKLFQID 108 F + + + + I+ F +I+ +++ +++ L+P L+R + + Sbjct: 156 TGFFRKNSHDLLPIEDFYIQDPVIDQVILFTRDLLRRFDLKPYDEQEKTGLIRNLVVRRG 215 Query: 109 YLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIG-------RANKTKIC 161 + + + +V L+ R + RL +A A K +Q I + Sbjct: 216 HYSG---EIMVILVTTRPKIFRVEQLMERLTEAFPAIKSIMQNINDQPGNAIFGKDWRTL 272 Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGN 220 ++Y+ +++ ++ +F Q N + + + + ++ D+ L+ Y G Sbjct: 273 YGQNYITDQMLGND----FQIAAPAFYQVNTEMAEKLYQTAIDFSELTADDVVLDAYSGI 328 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G L +A+ +V VE+ +VE ++ N A N + N V ++E Q +E Sbjct: 329 GTIGLSVAKQVKQVYGVEVIPEAVENSQKNAAINGITNASYVCAPAEEAIQNWLKE---- 384 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGM-VQAYP-HILYISCNPDSLCRDLSILST- 337 + I VDPPR GL ++ + V P I YISCN ++ RD+ + Sbjct: 385 --------GIQADVILVDPPRKGLTESFIKASVSMEPKKITYISCNVATMARDIKLYQEL 436 Query: 338 THTIERLALFDQFPYTRHMECGVLLVRKP 366 + ++++ D FP T H+EC VLL RK Sbjct: 437 GYELKKVQPVDLFPQTHHVECVVLLQRKK 465 >gi|322807691|emb|CBZ05266.1| RNA methyltransferase, TrmA family [Clostridium botulinum H04402 065] Length = 467 Score = 279 bits (714), Expect = 4e-73, Method: Composition-based stats. Identities = 77/387 (19%), Positives = 145/387 (37%), Gaps = 37/387 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54 + Y+ QL K R+ + ++ I P YR + + + + Sbjct: 85 GCQVQHYSYKAQLEFKKQRVIDSLERIGKLDIDKIKIEDTIGMENPYRYRNKIQMPVRFE 144 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGSL-------LINALMIEMMATIRLEPLLRAKLFQI 107 ++ + +T E + +I M++ + E + + I Sbjct: 145 KGEIKIGFYKSRTHEVADVKECFIQDEQADKIIQIIRNWMVKYNISAYNEETGKGFIRHI 204 Query: 108 DYLTSQSDQAIVTLIYHRLLDDA--WRECAIRLRDALHARKYQIQLIGRANKTKICLDRD 165 + ++ ++ +I ++ E + K IQ I KT + L Sbjct: 205 MVRKAFKNKELMLVIVTNKEEEIPYKEELINEVIKEFSNIKSIIQNINT-KKTNVILGEK 263 Query: 166 YVD----ERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGN 220 + + +T + SF Q N + + L + + + YCG Sbjct: 264 CITLWGKDTITDYIDKFKFNISPLSFFQVNPIQTEVLYKKALEFANLKGEEIVFDAYCGT 323 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G SL L++ +V AVEI K +++ A+ N N ++N + S+E Sbjct: 324 GTISLFLSQKAKKVYAVEIIKEAIDNAKDNAKENKIDNAEFFVGKSEEV----------- 372 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILST- 337 + D+ + + VDPPR G + + + A I Y+SC+P +L RDL IL+ Sbjct: 373 -IPDLIDKGIKADVVVVDPPRKGCEKTLLEAIAATKPKRIAYVSCDPGTLARDLGILNEL 431 Query: 338 THTIERLALFDQFPYTRHMECGVLLVR 364 + +++ D FP T H+EC V + R Sbjct: 432 GYETKKVQPVDMFPQTSHVECVVRIER 458 >gi|307688528|ref|ZP_07630974.1| RNA methyltransferase, TrmA family protein [Clostridium cellulovorans 743B] Length = 462 Score = 279 bits (714), Expect = 5e-73, Method: Composition-based stats. Identities = 73/394 (18%), Positives = 156/394 (39%), Gaps = 46/394 (11%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL---------QIFRSEPIHYRMRAEFHIW 52 L Y+ QL K R++ + +L + P YR + + + Sbjct: 85 GCQLQHLSYKGQLEFKKSRVQDCIERIGGFDLSEDNIQLHETLGMENPYRYRNKVQLPVG 144 Query: 53 HDGDDLYHIMFDQQTKERMRIDYFMPG---SLLINALMIEMMATIRLEP--------LLR 101 +D+ + Q++ + ++ + + ++ + M +++P +++ Sbjct: 145 GTVEDVKIGFYSQRSHNIIDMESCNIQFEEADTVVDIVKQWMQENKIQPYNEETHTGIVK 204 Query: 102 AKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161 + + + +D+ +V ++ + L+D+ + +Q + KT + Sbjct: 205 HIMVRKAF---NNDELMVVVVTNGKSLPKKEILIKELQDSFNNLVSVVQNVND-KKTNVV 260 Query: 162 LDRD----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLE 215 L D + + ++ + SF Q N + L G+ G+ + + Sbjct: 261 LGLDNVTLFGKDTISDYIGEFKFNISPLSFFQVNPVQTEVLYNKALE-YAGLTGNEVVFD 319 Query: 216 LYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275 YCG G SL L++ +V VEI + ++E A N N ++N + ++ + Sbjct: 320 AYCGTGTISLFLSKKASKVYGVEIIEAAIENANINAKENKIDNAEFFVGKCEDVIPKLIA 379 Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLS 333 + + + VDPPR G + + + + + I+Y+SC+P +L RDL Sbjct: 380 D------------GVKADVVVVDPPRKGCEKSLLDALVSMSPERIVYVSCDPGTLARDLR 427 Query: 334 ILST-THTIERLALFDQFPYTRHMECGVLLVRKP 366 IL + ++ + D FP T H+E VL+ RK Sbjct: 428 ILCDMGYDLKEVQPVDMFPETGHVESVVLITRKD 461 >gi|291166646|gb|EFE28692.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Filifactor alocis ATCC 35896] Length = 543 Score = 279 bits (714), Expect = 5e-73, Method: Composition-based stats. Identities = 76/393 (19%), Positives = 153/393 (38%), Gaps = 40/393 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-----IFRSEPIHYRMRAEFHIWHDGD 56 ++ Y++QL K + + M +L I P YR + ++ + + Sbjct: 83 GCQIMEMDYQEQLLMKQHIVEENMKRIGGLDLIHVLPVIGMKHPYRYRNKGQYPVAIQNN 142 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLIN-----------ALMIEMMATIRLEPLLRAKLF 105 + + ++ + + ++ + + N I + + LR + Sbjct: 143 TVVSGFYKVRSHDIVPVNDCILQQEISNTAVTIIRNFAQKKGISVYNETSHQGNLRRIVV 202 Query: 106 QIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161 ++ + T Q +VT + + L ++ L + + + + I Sbjct: 203 KVGFETKQVMIVLVTKERKFPHRKELLTELQQQIPNLTTIVQNIQPKPSNTVMGKENIIW 262 Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220 + + L L + SF Q N + L A + +++LYCG Sbjct: 263 FGDGTIYDTL----NGLTFEISPLSFYQVNPIQTEVLYNTALKLANLSGRETVIDLYCGI 318 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G SL L+R+ +V VEI + ++ A+ N + N ++NV+ + S++ + + Sbjct: 319 GTISLFLSRNAKKVYGVEIVEDAILDAKKNASHNQIDNVEFICGKSEDVLPQLYK----- 373 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILST- 337 + +DPPR G D+ + ++ P I+YISCN +L RD+ +L Sbjct: 374 -------KGICADIVMLDPPRKGCDETLLHVISEMNVPRIVYISCNSATLARDMKLLHEL 426 Query: 338 THTIERLALFDQFPYTRHMECGVLLVRKPSGWH 370 +T + + D F +T H+EC VLL + H Sbjct: 427 GYTADTVQPVDMFCHTMHVECVVLLSKLDVDKH 459 >gi|329769944|ref|ZP_08261342.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Gemella sanguinis M325] gi|328837548|gb|EGF87174.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Gemella sanguinis M325] Length = 445 Score = 279 bits (714), Expect = 5e-73, Method: Composition-based stats. Identities = 76/387 (19%), Positives = 159/387 (41%), Gaps = 39/387 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLA-FQVPNLQI----FRSEPIHYRMRAEFHIWHDGD 56 L+ YE+QL K +++ +M ++++ + HYR ++ + + Sbjct: 75 GANLVHMSYEEQLRFKTKKVQNVMNKTLGQNSVEVLETLGMKDGYHYRNKSVIPVQKVDN 134 Query: 57 DLYHIMFDQQTKERMRIDYFMPG-----------SLLINALMIEMMATIRLEPLLRAKLF 105 ++ + ++ + + I+ LI + + + + +R +F Sbjct: 135 EVKMGYYKPRSHDVVNIEKCFIQYDEHNKLMNYTRDLIAEMNLSIYDEKTHKGAIRHIMF 194 Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDAWR---ECAIRLRDALHARKYQIQLIGRANKTKICL 162 + + ++ I+ LD + E R+ + + + +KT+ Sbjct: 195 RTNSNKTEIMVGIIVNEKFPGLDKFVKKITEFDSRIISVMLNTNNKKTNVIFGDKTENLY 254 Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNG 221 +DY+ + L + ++ SF Q N + L A +++ YCG G Sbjct: 255 GKDYITDTLG----GIEFKISLRSFYQVNPIQTEVLYSKALELAKLNQDDTIIDAYCGIG 310 Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281 SL A+ +V +EI + +V AR N N++ NV+ + S++ Sbjct: 311 TISLFAAQKVKKVYGIEIVEAAVLDARENAKNNNITNVEFLLGKSEDV------------ 358 Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILST-T 338 +KD+ + + VDPPR G +++ + + + I+Y+SCNP +L RD+ I+ Sbjct: 359 IKDLISKDVQIDAVIVDPPRKGCEESFLRDLASMGIEKIVYVSCNPATLARDMEIMRGLG 418 Query: 339 HTIERLALFDQFPYTRHMECGVLLVRK 365 + + + D FP T H+E LLV++ Sbjct: 419 YKLGAVQPVDMFPGTYHVEAVSLLVKE 445 >gi|94992657|ref|YP_600756.1| 23S rRNA m(5)U 1939 methyltransferase [Streptococcus pyogenes MGAS2096] gi|94546165|gb|ABF36212.1| 23S rRNA m(5)U 1939 methyltransferase [Streptococcus pyogenes MGAS2096] Length = 464 Score = 279 bits (714), Expect = 5e-73, Method: Composition-based stats. Identities = 81/382 (21%), Positives = 148/382 (38%), Gaps = 40/382 (10%) Query: 10 YEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 YE QL K +++ + I +EP+ YR +A+ + L F Sbjct: 99 YEDQLTFKKKQVQDSLYKIAGISDVTVESTIGMTEPLAYRNKAQVPVRRVNGQLETGFFR 158 Query: 65 QQTKERMRIDYFMPGSLLINAL-----------MIEMMATIRLEPLLRAKLFQIDYLTSQ 113 + + + + I + I+ L I+ LLR + + + + Sbjct: 159 KHSHDLIPISDYYIQDKEIDRLINFTRDLLRRFDIKPYDETEQTGLLRNIVVRRGHYSG- 217 Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD----YVDE 169 + ++ L+ R + ++ +A A IQ I N T +D Y + Sbjct: 218 --EMMLVLVTTRPKVFRVDQVIEKIVEAFPAVVSIIQNINDKN-TNAIFGKDFKTLYGKD 274 Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLA 228 +T + Y SF Q N + + + +A + + D +++ Y G G L A Sbjct: 275 TITDSMLGNNYAISAQSFYQVNTIMAEKLYQTAIAFSDLSKDDIVIDAYSGIGTIGLSFA 334 Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288 + V VE+ + +V A+ N A N + N V +++ ++ Sbjct: 335 KTVKAVYGVEVIEAAVRDAQQNAALNGITNAYFVADTAEHAMATWAKD------------ 382 Query: 289 SYRFKTIFVDPPRSGLDDATVGM--VQAYPHILYISCNPDSLCRDLSILST-THTIERLA 345 + I VDPPR GL ++ + I+YISCNP ++ RD+ + + ++ Sbjct: 383 GIKPSVILVDPPRKGLTESFIQASVAMGPQKIIYISCNPATMARDIKRYQELGYKLTKVQ 442 Query: 346 LFDQFPYTRHMECGVLLVRKPS 367 D FP T H+E VL+ +K S Sbjct: 443 PVDLFPQTHHVETIVLIQKKNS 464 >gi|302873306|ref|YP_003841939.1| RNA methyltransferase, TrmA family [Clostridium cellulovorans 743B] gi|302576163|gb|ADL50175.1| RNA methyltransferase, TrmA family [Clostridium cellulovorans 743B] Length = 472 Score = 279 bits (714), Expect = 5e-73, Method: Composition-based stats. Identities = 73/394 (18%), Positives = 156/394 (39%), Gaps = 46/394 (11%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL---------QIFRSEPIHYRMRAEFHIW 52 L Y+ QL K R++ + +L + P YR + + + Sbjct: 95 GCQLQHLSYKGQLEFKKSRVQDCIERIGGFDLSEDNIQLHETLGMENPYRYRNKVQLPVG 154 Query: 53 HDGDDLYHIMFDQQTKERMRIDYFMPG---SLLINALMIEMMATIRLEP--------LLR 101 +D+ + Q++ + ++ + + ++ + M +++P +++ Sbjct: 155 GTVEDVKIGFYSQRSHNIIDMESCNIQFEEADTVVDIVKQWMQENKIQPYNEETHTGIVK 214 Query: 102 AKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161 + + + +D+ +V ++ + L+D+ + +Q + KT + Sbjct: 215 HIMVRKAF---NNDELMVVVVTNGKSLPKKEILIKELQDSFNNLVSVVQNVND-KKTNVV 270 Query: 162 LDRD----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLE 215 L D + + ++ + SF Q N + L G+ G+ + + Sbjct: 271 LGLDNVTLFGKDTISDYIGEFKFNISPLSFFQVNPVQTEVLYNKALE-YAGLTGNEVVFD 329 Query: 216 LYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275 YCG G SL L++ +V VEI + ++E A N N ++N + ++ + Sbjct: 330 AYCGTGTISLFLSKKASKVYGVEIIEAAIENANINAKENKIDNAEFFVGKCEDVIPKLIA 389 Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLS 333 + + + VDPPR G + + + + + I+Y+SC+P +L RDL Sbjct: 390 D------------GVKADVVVVDPPRKGCEKSLLDALVSMSPERIVYVSCDPGTLARDLR 437 Query: 334 ILST-THTIERLALFDQFPYTRHMECGVLLVRKP 366 IL + ++ + D FP T H+E VL+ RK Sbjct: 438 ILCDMGYDLKEVQPVDMFPETGHVESVVLITRKD 471 >gi|224438395|ref|ZP_03659322.1| tRNA (uracil-5-)-methyltransferase [Helicobacter cinaedi CCUG 18818] gi|313144837|ref|ZP_07807030.1| tRNA (uracil-5-)-methyltransferase [Helicobacter cinaedi CCUG 18818] gi|313129868|gb|EFR47485.1| tRNA (uracil-5-)-methyltransferase [Helicobacter cinaedi CCUG 18818] Length = 395 Score = 279 bits (714), Expect = 5e-73, Method: Composition-based stats. Identities = 130/386 (33%), Positives = 205/386 (53%), Gaps = 22/386 (5%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMML------AFQVPNLQIFRSEPIHYRMRAEFHIWHDG 55 G L YE+QL K+ + +Q F NL + S +R RAEF + + Sbjct: 10 GGCELDLAYEKQLESKLKQTQQEFSSLFSSNGFSSANLSVHNSVEWGFRARAEFRFYTEQ 69 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTS-QS 114 + ++ M +++ R I +I M ++ ++ + LR K++ ++L + +S Sbjct: 70 NRIHFAMSNREKNHRTPITQCPILLPIIQKAMPLVIESLEADETLRTKVYACNFLANIES 129 Query: 115 DQAIVTLIYHRLLDDAWRECAIRLRDALH-ARKYQIQLIGRANKTKICLDR-DY---VDE 169 + I++LIYH+ LD W + A +RD LH A +IGRA KI + DY V E Sbjct: 130 QEIIISLIYHKRLDSIWEQKAQNMRDRLHTALNATAHIIGRAKNQKILVGDFDYDSCVRE 189 Query: 170 RLTVAGRT-----LIYRQIENSFTQPNAGINVHMLEWVL----AATKGIQGDLLELYCGN 220 L + + + + E+SF+QPN IN MLE+V+ A D+LELYCG Sbjct: 190 SLRLFADSKQKQNYTFFKQESSFSQPNPFINTKMLEFVITHLKALYPQPDNDMLELYCGG 249 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 GNFS+ L+ F ++LA E+ K ++ + N+ N N+ VR+++ E A+ EREF Sbjct: 250 GNFSIALSGVFRQILATEVVKSAISLLQQNMEQNFCENITPVRLNALETQVALSGEREFF 309 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDD-ATVGMVQAYPHILYISCNPDSLCRDLSILSTTH 339 RL+ IDI + F + +DPPRSG+++ + +Q + I+Y+SC P +L +DL L +H Sbjct: 310 RLRGIDIKRFSFDCVLIDPPRSGVNELKILHFLQQFNTIVYVSCKPHTLLQDLQTLIQSH 369 Query: 340 TIERLALFDQFPYTRHMECGVLLVRK 365 I LFDQFP+T H EC V+L +K Sbjct: 370 NILHFGLFDQFPHTHHRECIVILRQK 395 >gi|290894402|ref|ZP_06557365.1| RNA methyltransferase [Listeria monocytogenes FSL J2-071] gi|290556063|gb|EFD89614.1| RNA methyltransferase [Listeria monocytogenes FSL J2-071] Length = 459 Score = 279 bits (713), Expect = 5e-73, Method: Composition-based stats. Identities = 82/390 (21%), Positives = 143/390 (36%), Gaps = 40/390 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL-------QIFRSEPIHYRMRAEFHIWHD 54 L Y QL K D + Q + + I +P YR +++F Sbjct: 84 GCQLQHVAYSAQLELKRDIVIQSIEKHTKIDPVKLKIRPTIGMEDPWRYRNKSQFQTRMV 143 Query: 55 GDDLYH-IMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRA 102 G +F + + + I+ + LI + + ++R Sbjct: 144 GSGQVETGLFGANSHQLVPIEDCIVQQPVTIKVTNFVRDLIEKYGVPIYDEKAGSGIVRT 203 Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162 + + T ++ +T + L RE + AL +Q + +A + I Sbjct: 204 IVVRTGVKTGETQLVFITN--SKKL-PKKREMLAEIEAALPEVTSIMQNVNQAKSSLIFG 260 Query: 163 DRDYV---DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYC 218 D ++ E + L + +F Q N + + V A + L++ YC Sbjct: 261 DETFLLAGKESIEEKLMELEFDLSARAFFQLNPFQTERLYQEVEKALVLTGSETLVDAYC 320 Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278 G G A V ++I S+E A+ N N + NV +++ +E Sbjct: 321 GVGTIGQAFAGKVKEVRGMDIIPESIEDAKRNAEKNGIENVYYEVGKAEDVLPKWVKE-- 378 Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILS 336 +R + VDPPRSG D + + ++Y+SCNP +L RDL++L+ Sbjct: 379 ----------GFRPDAVIVDPPRSGCDQGLIKSLLDVEAKQLVYVSCNPSTLARDLALLA 428 Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVRKP 366 + I + D FP T H+E VLL K Sbjct: 429 KKYRIRYMQPVDMFPQTAHVETVVLLQLKD 458 >gi|291545363|emb|CBL18471.1| 23S rRNA m(5)U-1939 methyltransferase [Ruminococcus sp. SR1/5] Length = 453 Score = 279 bits (713), Expect = 6e-73, Method: Composition-based stats. Identities = 76/389 (19%), Positives = 144/389 (37%), Gaps = 41/389 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQV-----PNLQIFRSEPIHYRMRAEFHIWH-DG 55 L YEQQL K ++R + + +P HYR +A+F + Sbjct: 81 GCQLQALSYEQQLKFKEKKVRGHLERIGGFQNLDMEPIMGMEDPYHYRNKAQFPVGKNKD 140 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKL 104 + + +T + + G + ++ + L+R + Sbjct: 141 GKIITGFYAGRTHSIIDNRECILGVKQNKEVLDRVIGHMEKYHVQPYDEATGKGLVRHIM 200 Query: 105 FQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALH---ARKYQIQLIGRANKTKIC 161 + + T + ++ + A E + + + + ++ ++ Sbjct: 201 IRYGFHTDEMMVCLILNGDKIPAEKALVESLCEIPEMTSITINVNKKRNNVILGDQLRLL 260 Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCG 219 + Y+ + + + Y+ SF Q N + L G+ G+ + +LYCG Sbjct: 261 WGQSYIMDSIG----DISYQISPLSFFQVNPIQTEKLYGKALE-YAGLTGNETVWDLYCG 315 Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279 G SL LA+ V VEI +++ AR N N + NV+ ++E + Sbjct: 316 IGTISLFLAQKAKFVRGVEIVPQAIDNARENAKLNGIENVEFFVGKAEEVLPRGYEK--- 372 Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILS- 336 + I VDPPR G D+ + + ++Y+SC+ +L RDL +L Sbjct: 373 --------NGVYADVIVVDPPRKGCDEVLLNTILKMKPERVVYVSCDSATLARDLKVLCA 424 Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVRK 365 + + R++ D FP H+E LL RK Sbjct: 425 EDYELVRVSTTDMFPQGVHVETVCLLSRK 453 >gi|295702575|ref|YP_003595650.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus megaterium DSM 319] gi|294800234|gb|ADF37300.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus megaterium DSM 319] Length = 461 Score = 279 bits (713), Expect = 6e-73, Method: Composition-based stats. Identities = 80/391 (20%), Positives = 151/391 (38%), Gaps = 43/391 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAF-------QVPNLQIFRSEPIHYRMRAEFHIWHD 54 L YE QL K D + Q + I +P YR +++F + D Sbjct: 88 GCQLQHLSYEGQLESKRDIVLQAFERHSSLKKVEEKTRQTIGMEDPWGYRNKSQFQVGVD 147 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPG-------SLLINALMIEMMATIRLEPLLRAKLFQI 107 + ++ + + I+ + I ++ ++ I E R + I Sbjct: 148 KQKVIAGLYGLNSHRLIDIENCPIQHGATNHVTKEIKRILQDLQIPIYNERKRRGIVRTI 207 Query: 108 DYLTS-QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY 166 ++ + V LI + ++ L K +Q + KT + Sbjct: 208 VSRVGFETGEVQVVLITAKQEIPKKELVIKEIKRRLPEVKSLVQNVN-GQKTSLIFG--- 263 Query: 167 VDERLTVAGRTLI--------YRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELY 217 DE T++G+++I + +F Q N V + + V AA +++ Y Sbjct: 264 -DETFTLSGKSVIQETLGDISFELSARAFFQLNPLQTVKLYDEVKKAAALTGNEKIVDAY 322 Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277 CG G L LA+ + ++ + S+ AR N + + V +++++ +E Sbjct: 323 CGVGTIGLWLAKDAKEIRGMDTIEESIVDARKNAQDHGFEHATYVTGAAEKWMPQWVKE- 381 Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSIL 335 ++ I VDPPR+G DD + + ++Y+SCNP +L +D+ L Sbjct: 382 -----------GWKPDVIVVDPPRTGCDDKLLKTILQVKPKKVVYVSCNPSTLAKDVQQL 430 Query: 336 STTHTIERLALFDQFPYTRHMECGVLLVRKP 366 S + ++ + D FP+T H+E V L K Sbjct: 431 SKAYHVDYIQPVDMFPHTAHVENVVSLTLKK 461 >gi|325569856|ref|ZP_08145850.1| 23S rRNA (uracil-5-)-methyltransferase [Enterococcus casseliflavus ATCC 12755] gi|325156979|gb|EGC69147.1| 23S rRNA (uracil-5-)-methyltransferase [Enterococcus casseliflavus ATCC 12755] Length = 458 Score = 279 bits (713), Expect = 6e-73, Method: Composition-based stats. Identities = 88/391 (22%), Positives = 152/391 (38%), Gaps = 43/391 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIF-------RSEPIHYRMRAEFHIWHD 54 L Y++QL K D L+Q + F+ Q F P HYR +A+F + ++ Sbjct: 84 GCQLQHLVYDKQLDFKKDLLKQALEKFKPKGYQQFELRDTLGMDVPWHYRNKAQFQLRYN 143 Query: 55 G--DDLYHIMFDQQTKERMRIDYFMPG-----------SLLINALMIEMMATIRLEPLLR 101 + +++ ++ + ID + L+N I + + +LR Sbjct: 144 SQTKRIEAGLYEMESHRLVAIDDCLVQEQDTQKVINGIVQLLNKYQIPIYDERKNSGILR 203 Query: 102 AKLFQIDYLTSQSDQAIVTLIYHRLLDDAW-RECAIRLRD---ALHARKYQIQLIGRANK 157 + +I T + +T +A RE RL + + + + + Sbjct: 204 TLMVRIGIATGEVQVVFITNSVKLPQKNALIREINQRLPQVVSIMQNVQNKKTSVVMGEE 263 Query: 158 TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLEL 216 T ++ ++ERL L + +F Q N + E V A +++ Sbjct: 264 TIHLWGKEAIEERL----NELTFDLSARAFFQLNPQQTSVLYQEGVKALDLSKNETVVDA 319 Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276 YCG G L +A + V ++I ++E A+ N N +++E E Sbjct: 320 YCGVGTIGLSVAPYAKEVRGMDIIPQAIENAQENAHRIGAQNTHYETGTAEELLPKWFNE 379 Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSI 334 ++ +I VDPPR+GLD+ + + P ++YISCN +L RDL Sbjct: 380 ------------GFKPDSIIVDPPRTGLDERLLQALLKQPPKKMVYISCNVSTLARDLVQ 427 Query: 335 LSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 L+ +E L D FP T E V L RK Sbjct: 428 LAKVFHVEYLQSVDMFPQTARCEVVVKLTRK 458 >gi|94988772|ref|YP_596873.1| 23S rRNA m(5)U 1939 methyltransferase [Streptococcus pyogenes MGAS9429] gi|94542280|gb|ABF32329.1| 23S rRNA m(5)U 1939 methyltransferase [Streptococcus pyogenes MGAS9429] Length = 462 Score = 279 bits (713), Expect = 6e-73, Method: Composition-based stats. Identities = 81/380 (21%), Positives = 149/380 (39%), Gaps = 40/380 (10%) Query: 10 YEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 YE QL K +++ + I +EP+ YR +A+ + L F Sbjct: 99 YEDQLTFKKKQVQDSLYKIAGISDVTVESTIGMTEPLAYRNKAQVPVRRVNGQLETGFFR 158 Query: 65 QQTKERMRIDYFMPGSLLINAL-----------MIEMMATIRLEPLLRAKLFQIDYLTSQ 113 + + + + I + I+ L I+ LLR + + + + Sbjct: 159 KHSHDLIPISDYYIQDKEIDRLINFTRDLLRRFDIKPYDETEQTGLLRNIVVRRGHYSG- 217 Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD----YVDE 169 + ++ L+ R + ++ +A A IQ I N T +D Y + Sbjct: 218 --EMMLVLVTTRPKVFRVDQVIEKIVEAFPAVVSIIQNINDKN-TNAIFGKDFKTLYGKD 274 Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLA 228 +T + Y SF Q N + + + +A + + D +++ Y G G L A Sbjct: 275 TITDSMLGNNYAISAQSFYQVNTIMAEKLYQTAIAFSDLSKDDIVIDAYSGIGTIGLSFA 334 Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288 + V VE+ + +V A+ N A N + N V +++ ++ Sbjct: 335 KTVKAVYGVEVIEAAVRDAQQNAALNGITNAYFVADTAEHAMATWAKD------------ 382 Query: 289 SYRFKTIFVDPPRSGLDDATVGM--VQAYPHILYISCNPDSLCRDLSILST-THTIERLA 345 + I VDPPR GL ++ + I+YISCNP ++ RD+ + + ++ Sbjct: 383 GIKPSVILVDPPRKGLTESFIQASVAMGPQKIIYISCNPATMARDIKRYQELGYKLTKVQ 442 Query: 346 LFDQFPYTRHMECGVLLVRK 365 D FP T H+EC VLL+++ Sbjct: 443 PVDLFPQTHHVECVVLLIKE 462 >gi|253579594|ref|ZP_04856863.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251849095|gb|EES77056.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 545 Score = 279 bits (713), Expect = 6e-73, Method: Composition-based stats. Identities = 80/386 (20%), Positives = 143/386 (37%), Gaps = 39/386 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDG- 55 L Y+QQL K ++++ + I E HYR +A+F + + Sbjct: 81 GCQLQALSYDQQLVFKTNKVKGHLERIGGFTDIPMEPIIGMDELFHYRNKAQFPVGRNKE 140 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKL 104 + + +T + G + IE + L+R L Sbjct: 141 GKIVTGFYAGRTHNIIENRDCALGVAENKEVLDRVIAHMEKYGIEPYNEATGKGLVRHVL 200 Query: 105 FQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALH---ARKYQIQLIGRANKTKIC 161 + Y T + ++ ++ + + + + + ++ Sbjct: 201 IRYGYFTKEVMVCLILNGNKIPKEEQLVKSLCEIPGMTSITINVNKKHSNVILGEEIRLL 260 Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220 ++Y+ +R+ + Y+ SF Q N + L A Q + +LYCG Sbjct: 261 WGQEYITDRIG----DISYQISPLSFYQVNPMQTQKLYAKALEYADLHGQETVWDLYCGI 316 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G SL LA+ V VEI ++E A+ N N + N + ++E ++ Sbjct: 317 GTISLFLAQKAKFVRGVEIVPAAIENAKENAKLNGLENTEFFVGKAEEVLPREYKK---- 372 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCRDLSILST- 337 + I VDPPR G D+ + MV+ P I+Y+SC+ +L RDL L Sbjct: 373 -------NGVYADVIVVDPPRKGCDETLLETMVEMNPDRIVYVSCDSATLARDLKYLCER 425 Query: 338 THTIERLALFDQFPYTRHMECGVLLV 363 + + ++ DQF T H+E VLL Sbjct: 426 GYELRKVCPVDQFGMTVHVETVVLLS 451 >gi|299820563|ref|ZP_07052453.1| 23S rRNA (uracil-5-)-methyltransferase [Listeria grayi DSM 20601] gi|299818058|gb|EFI85292.1| 23S rRNA (uracil-5-)-methyltransferase [Listeria grayi DSM 20601] Length = 457 Score = 279 bits (713), Expect = 6e-73, Method: Composition-based stats. Identities = 79/390 (20%), Positives = 148/390 (37%), Gaps = 42/390 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLA---FQVPNLQI----FRSEPIHYRMRAEFHIWH- 53 L Y+ QL K D L Q + F + L I EP YR +++F + Sbjct: 84 GCQLQHISYQAQLELKRDILIQALEKHTKFNIGKLPIKDVIGMDEPFRYRNKSQFQTRYS 143 Query: 54 DGDDLYHIMFDQQTKERMRIDYFMPGS-----------LLINALMIEMMATIRLEPLLRA 102 + ++ ++ + + + ID + + L I + + ++R Sbjct: 144 EDGNVVAGLYSANSHDLVPIDDCLVQDPATVAITNTVKEALQELNIPIYNEKQNSGIVRT 203 Query: 103 KLFQIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKT 158 + + + T QS ++T L R L + ++ + + Q + +T Sbjct: 204 IVVRTGFKTGQSQLVLITNSKKLPKKRALLEIIKQKHPEIISIMQNVNTQKSSLIFGEET 263 Query: 159 KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELY 217 +E + A + Y +F Q N + V A +++ Y Sbjct: 264 MHLDG----EETMQEALGEMKYDLSARAFFQLNPVQTEKLYNEVRRALNLSGTERIIDAY 319 Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277 CG G L LA V +++ ++E A++N A N V N ++ E Sbjct: 320 CGAGTIGLSLAGQVREVRGMDVIPEAIEDAKHNAALNQVTNSYYEVGKAETILPKWLEE- 378 Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSIL 335 ++ + +DPPR G D + + + A I+Y+SCNP +L RDL++ Sbjct: 379 -----------GFQADAVILDPPRVGCDQSLIRALLDYAPKQIVYVSCNPSTLARDLALF 427 Query: 336 STTHTIERLALFDQFPYTRHMECGVLLVRK 365 S + I + D FP T H+E ++ ++ Sbjct: 428 SKEYQINSIQPVDMFPQTAHVETVTVMQKR 457 >gi|195977835|ref|YP_002123079.1| 23S rRNA-methyltransferase [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|195974540|gb|ACG62066.1| 23S rRNA-methyltransferase [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 453 Score = 279 bits (713), Expect = 7e-73, Method: Composition-based stats. Identities = 85/381 (22%), Positives = 138/381 (36%), Gaps = 40/381 (10%) Query: 10 YEQQLAEKVDRLRQMMLAFQV-----PNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 Y QQL K +++ + I P YR +A+ + L F Sbjct: 88 YPQQLLFKQKQVQDSLYKIAGISNVEVKETIGMEYPYAYRNKAQVPVRRVNGQLETGFFR 147 Query: 65 QQTKERMRIDYFMPGSLLINAL-----------MIEMMATIRLEPLLRAKLFQIDYLTSQ 113 + + E + I F I+ L I+ L+R + + + + + Sbjct: 148 KHSHELVPISDFYIQDKEIDRLIAFTRDLLRRFDIKPYDEKEQSGLIRHLVVRRGHYSGE 207 Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD----RDYVDE 169 +VT R + RL A +Q I T + R Y E Sbjct: 208 IMLVLVT---TRPKIFRINQMIDRLVAEFPAITSILQNIND-KPTNVIFGKAFTRLYGKE 263 Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLA 228 +T Y SF Q N + + + + ++ D+ ++ Y G G L A Sbjct: 264 TITDTILGNQYCISAQSFYQVNTTMAEKLYQTAIDFSELTADDVVIDAYSGIGTIGLSFA 323 Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288 + V VE+ + +V A N A N + N V S++ +E Sbjct: 324 KEVKAVYGVEVIEAAVRDAEKNAALNGITNAHYVADSAENAMANWCQE------------ 371 Query: 289 SYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILST-THTIERLA 345 + I VDPPR GL ++ + A I YISCNP ++ RD+ + ++++ Sbjct: 372 GIKPTVIIVDPPRKGLTESFIKASAAMQPDKITYISCNPATMARDIKRYEELGYKLQKVQ 431 Query: 346 LFDQFPYTRHMECGVLLVRKP 366 D FP T H+EC VLL R Sbjct: 432 PVDLFPMTHHVECVVLLQRSK 452 >gi|27468500|ref|NP_765137.1| RNA methyltransferase-like protein [Staphylococcus epidermidis ATCC 12228] gi|27316047|gb|AAO05181.1|AE016749_127 RNA methyltransferase-like protein [Staphylococcus epidermidis ATCC 12228] Length = 472 Score = 278 bits (712), Expect = 7e-73, Method: Composition-based stats. Identities = 72/388 (18%), Positives = 138/388 (35%), Gaps = 40/388 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFHIWHDGD 56 L Y QL K +++ + I P YR +++ + Sbjct: 98 GCQLQHMTYRAQLDMKREQVVNLFHRKGPFENTVIKETIGMVNPWRYRNKSQIPVGQSNS 157 Query: 57 DL-YHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKL 104 + + Q++ + + +D + +N L I + L+R + Sbjct: 158 NQVIMGFYRQRSHDIIDMDSCLIQDRQHQEVMNRVKYWLNELNISIYNEKTKTGLIRHLV 217 Query: 105 FQIDYLTSQSDQAIVTL----IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKI 160 + Y T + VT LL + ++ + + ++ Sbjct: 218 VRTGYHTDEMMVIFVTNGATFKQSELLVNKLKKEFPNITSIKQNINNSHSNVIMGRQSMT 277 Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCG 219 +D ++++L+ + Y + SF Q N+ + + L + + +L+ YCG Sbjct: 278 LYGKDKIEDQLS----EVTYHISDLSFYQINSSQTEKLYQQALNYAQLTGKEIVLDTYCG 333 Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279 G L +A V VE+ +++ A N N + N +++ + Sbjct: 334 IGTIGLYMAPLAKHVYGVEVVPQAIKDAEDNATKNQLKNTTFECGKAEDVILTWKS---- 389 Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILST 337 + + VDPPR G D+ + + I+YISCNP + RD IL+ Sbjct: 390 --------QGIKPDVVMVDPPRKGCDETFLTTLLKLNPKRIVYISCNPSTQQRDAQILAE 441 Query: 338 THTIERLALFDQFPYTRHMECGVLLVRK 365 + + + D FP T H+E L VRK Sbjct: 442 QYELVEITPVDMFPQTTHIETVALFVRK 469 >gi|16800882|ref|NP_471150.1| hypothetical protein lin1815 [Listeria innocua Clip11262] gi|50401775|sp|Q92AV4|Y1815_LISIN RecName: Full=Uncharacterized RNA methyltransferase lin1815 gi|16414317|emb|CAC97046.1| lin1815 [Listeria innocua Clip11262] Length = 457 Score = 278 bits (712), Expect = 7e-73, Method: Composition-based stats. Identities = 80/389 (20%), Positives = 144/389 (37%), Gaps = 40/389 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL-------QIFRSEPIHYRMRAEFHIWHD 54 L Y QL K D + Q + + I +P YR +++F Sbjct: 84 GCQLQHVAYNAQLELKRDIVIQSIEKHTKIDPAKLKIRPTIGMEDPWRYRNKSQFQTRMV 143 Query: 55 GDDLYH-IMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRA 102 G +F + + + I+ + L+ + + ++R Sbjct: 144 GSGQVETGLFGANSHQLVPIEDCIVQQPVTIKVTNFVRDLLEKYGVPIYDEKAGSGIIRT 203 Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162 + + T ++ +T + L RE + AL +Q + +A + I Sbjct: 204 IVVRTGVKTGETQLVFITN--SKKL-PKKREMLAEIEAALPEVTSIMQNVNQAKSSLIFG 260 Query: 163 DRDYV---DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYC 218 D ++ E + L + +F Q N + + V A + L++ YC Sbjct: 261 DETFLLAGKESIEEKLMELEFDLSARAFFQLNPFQTERLYQEVEKALVLTGSETLVDAYC 320 Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278 G G A V ++I S+E A+ N N ++NV +++ +E Sbjct: 321 GVGTIGQAFAGKVKEVRGMDIIPESIEDAKRNAEKNGIDNVYYEVGKAEDVLPKWVKE-- 378 Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILS 336 +R + VDPPRSG D + + ++Y+SCNP +L RDL++L+ Sbjct: 379 ----------GFRPDAVIVDPPRSGCDQGLIKSLLQVEAKQLVYVSCNPSTLARDLALLA 428 Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVRK 365 + I + D FP T H+E LL R+ Sbjct: 429 KKYQIRYMQPVDMFPQTAHVETVTLLQRR 457 >gi|168181980|ref|ZP_02616644.1| 23S rRNA -methyltransferase RumA [Clostridium botulinum Bf] gi|237796828|ref|YP_002864380.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum Ba4 str. 657] gi|182674796|gb|EDT86757.1| 23S rRNA -methyltransferase RumA [Clostridium botulinum Bf] gi|229263636|gb|ACQ54669.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum Ba4 str. 657] Length = 461 Score = 278 bits (712), Expect = 7e-73, Method: Composition-based stats. Identities = 77/387 (19%), Positives = 144/387 (37%), Gaps = 37/387 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54 + Y+ QL K R+ + ++ I P YR + + + + Sbjct: 85 GCQVQHYNYKAQLDFKKQRVIDSLERIGKLDIDKIKIEDTIGMENPYRYRNKIQMPVRFE 144 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGSL-------LINALMIEMMATIRLEPLLRAKLFQI 107 ++ + +T E + +I M++ + E + + I Sbjct: 145 KGEIKIGFYKSRTHEVADVKECFIQDEQADKIIQIIRNWMVKHNISAYNEETGKGFIRHI 204 Query: 108 DYLTSQSDQAIVTLIYHRLLDDA--WRECAIRLRDALHARKYQIQLIGRANKTKICLDRD 165 + ++ ++ +I ++ E + K IQ + KT + L Sbjct: 205 MVRKAFKNKELMLVIVTNKEEEIPYKEELINEVIKEFSNIKSIIQNVNT-KKTNVILGEK 263 Query: 166 ----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGN 220 + + +T + SF Q N + + L + + + YCG Sbjct: 264 CITLWGKDAITDYIDKFKFNISPLSFFQVNPVQTEVLYKKALEFADLKGEEIVFDAYCGT 323 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G SL L++ +V VEI K +++ A N N+VNN + S+E Sbjct: 324 GTISLFLSQKAKKVYGVEIIKEAIDNAEDNAEENNVNNTEFFVGRSEEV----------- 372 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILST- 337 + D+ + + VDPPR G + + + A I+Y+SC+P +L RDL IL+ Sbjct: 373 -IPDLINKGIKADVVVVDPPRKGCEKTLLEAIAATKPKRIVYVSCDPGTLARDLGILNGL 431 Query: 338 THTIERLALFDQFPYTRHMECGVLLVR 364 + + + D FP T H+E VL+ R Sbjct: 432 GYETKEVQPVDMFPQTSHVETIVLIQR 458 >gi|308172666|ref|YP_003919371.1| RNA methyltransferase [Bacillus amyloliquefaciens DSM 7] gi|307605530|emb|CBI41901.1| putative RNA methyltransferase [Bacillus amyloliquefaciens DSM 7] gi|328552427|gb|AEB22919.1| RNA methyltransferase [Bacillus amyloliquefaciens TA208] gi|328910776|gb|AEB62372.1| putative RNA methyltransferase [Bacillus amyloliquefaciens LL3] Length = 466 Score = 278 bits (712), Expect = 7e-73, Method: Composition-based stats. Identities = 80/395 (20%), Positives = 152/395 (38%), Gaps = 48/395 (12%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLA---FQVPNL----QIFRSEPIHYRMRAEFHIWH- 53 L Y QQL EK D + Q + F V + I P +YR +++F + Sbjct: 90 GCQLQHLAYSQQLREKRDIVIQSLERHTRFNVEEMNIKETIGMDNPWNYRNKSQFQVGRS 149 Query: 54 DGDDLYHIMFDQQTKERMRIDYFMPGSLLINA-----------LMIEMMATIRLEPLLRA 102 + ++ + + + I + N + + + +R Sbjct: 150 QSGSIIAGLYGLDSHKIVPIKECIVQHPATNKTTGIVRRILEKHNVSVYNERTKKGDVRT 209 Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRAN------ 156 + ++ + ++ + V L+ + E +++ L K IQ I A Sbjct: 210 IVTRVGF---ETGEVQVVLVTAKETLPNKDEIVKAIQNRLPEVKSIIQNINGARTSVIFG 266 Query: 157 -KTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLL 214 KTK + E L + + +F Q N V + + V AA + ++ Sbjct: 267 DKTKALAGSHAIQEVLG----DVSFELSARAFFQLNPEQTVKLYDEVKKAAQLTGKEKVV 322 Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274 + YCG G + ++ + +++ K S++ A+ N + + N V +++ + Sbjct: 323 DAYCGVGTIGMWVSSGAKEIRGMDVIKESIDDAKKNAKKHGIKNAAYVTGTAEHWLPKWT 382 Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDL 332 +E +R + VDPPR+G D + ++ +Y+SCNP +L +DL Sbjct: 383 KE------------GFRPDVVIVDPPRTGCDGTFLDTIKKVKPKRFVYVSCNPSTLAKDL 430 Query: 333 SILSTTHTIERLALFDQFPYTRHMECGVLLVRKPS 367 LS + +E + D FP T H+E LV K S Sbjct: 431 QALSKDYRVEYIQPVDMFPQTAHVEAVAKLVLKSS 465 >gi|166030479|ref|ZP_02233308.1| hypothetical protein DORFOR_00140 [Dorea formicigenerans ATCC 27755] gi|166029731|gb|EDR48488.1| hypothetical protein DORFOR_00140 [Dorea formicigenerans ATCC 27755] Length = 467 Score = 278 bits (712), Expect = 7e-73, Method: Composition-based stats. Identities = 78/395 (19%), Positives = 152/395 (38%), Gaps = 37/395 (9%) Query: 2 SGTLLID-QYEQQLAEKVDRLRQMMLAFQVPNLQ---------IFRSEPIHYRMRAEFHI 51 G + + +Y QLA K ++R + + + EP HYR +A+F I Sbjct: 81 GGCQIQEMKYGAQLAFKEGKVRGNLERIGEVPTELLDKVMQPIVGMEEPFHYRNKAQFPI 140 Query: 52 WHDGDD-LYHIMFDQQTKERMRIDYF---MPGSLLINALMIEMMATIRL--------EPL 99 D + + + +T + + + I +++ M + + L Sbjct: 141 GTDKEGHIITGFYAGRTHSIIPNTDCALGVAVNQKILEIILHFMENNHISAYDEEKHKGL 200 Query: 100 LRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALH---ARKYQIQLIGRAN 156 +R L + + T + +V + + + + + Sbjct: 201 VRHVLIRYGFKTDEIMVCLVINGEKLPHAEKLVDKLCEISGMTSITISVNKAKTNVIMGK 260 Query: 157 KTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLE 215 + K+ + Y+ + + + Y+ SF Q N + L A + + Sbjct: 261 EIKLLWGQTYITDYIG----NVKYQISPLSFYQVNPVQTEKLYGLALDYADLNGNETVWD 316 Query: 216 LYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275 LYCG G SL LA++ +V VEI +++ AR N N + N + ++E R Sbjct: 317 LYCGIGTISLFLAQNAKQVYGVEIVPQAIDDARNNAKINDITNAEFYVGKAEEVLPGYYR 376 Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLS 333 E + + + I VDPPR G +++ + + ++Y+SC+ +L RD+ Sbjct: 377 EYQ----ESHGGETAHADVIVVDPPRKGCEESLLQTIVDMQPEKVVYVSCDSATLARDVK 432 Query: 334 IL-STTHTIERLALFDQFPYTRHMECGVLLVRKPS 367 L + + ++++ DQFP T H+E L R S Sbjct: 433 FLRESGYELKKITPVDQFPNTVHVEVVCCLHRVNS 467 >gi|308067596|ref|YP_003869201.1| RNA methyltransferase [Paenibacillus polymyxa E681] gi|305856875|gb|ADM68663.1| Hypothetical RNA methyltransferase [Paenibacillus polymyxa E681] Length = 534 Score = 278 bits (712), Expect = 8e-73, Method: Composition-based stats. Identities = 89/436 (20%), Positives = 152/436 (34%), Gaps = 86/436 (19%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-------------------------------- 29 + YE QL+ K + ++ Sbjct: 113 GCQIQHMSYEAQLSWKRQHVVDVLERIGKLSVAMESSEHTAQVLATSADTDGEADIVTTA 172 Query: 30 -------------------VPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKER 70 V + + SEP YR +A+ I L + + + Sbjct: 173 DSAMNADGNADSMSRVHGVVVHPTLGMSEPWRYRNKAQVPIGVTEGGLVGGFYARGSHRI 232 Query: 71 MRIDYFMPGSLLINA-----------LMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119 + ++ + + L I LLR + + + T + +V Sbjct: 233 VDMNTCLIQDERNDEVVARVKEIGRMLGISAYNEETGRGLLRHVVVKTAFRTGEMMLVLV 292 Query: 120 TLIYHRLLDDAW----RECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175 T DAW RE + + + ++T++ RD + + + Sbjct: 293 TNGRDIPHADAWISSIREHIPHVASICQNVNTKRTNVIFGDETRVLWGRDVIYDYIG--- 349 Query: 176 RTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRV 234 + + SF Q N + + V A + +++ YCG G SL LA+H D+V Sbjct: 350 -NVQFAISARSFYQVNPVQTEVLYGKTVEYAGLTGKETVIDAYCGIGTISLFLAQHADQV 408 Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294 VEI K +++ AR N N + NVK +S++ A + Sbjct: 409 YGVEIVKEAIDDARSNALLNEMRNVKFEVGASEDVIPAWKE------------QGITADV 456 Query: 295 IFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILS-TTHTIERLALFDQFP 351 I VDPPR G D +G + ++Y+SCNP +L RDL IL ++ + D FP Sbjct: 457 IVVDPPRKGCDPRLLGTILEMKPERVVYVSCNPSTLARDLRILEDGGYSTVEVQPVDMFP 516 Query: 352 YTRHMECGVLLVRKPS 367 +T H+E L+VR + Sbjct: 517 HTTHVENVALIVRSDT 532 >gi|84029598|sp|Q8CRU6|Y1582_STAES RecName: Full=Uncharacterized RNA methyltransferase SE_1582 Length = 456 Score = 278 bits (712), Expect = 8e-73, Method: Composition-based stats. Identities = 72/388 (18%), Positives = 138/388 (35%), Gaps = 40/388 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFHIWHDGD 56 L Y QL K +++ + I P YR +++ + Sbjct: 82 GCQLQHMTYRAQLDMKREQVVNLFHRKGPFENTVIKETIGMVNPWRYRNKSQIPVGQSNS 141 Query: 57 DL-YHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKL 104 + + Q++ + + +D + +N L I + L+R + Sbjct: 142 NQVIMGFYRQRSHDIIDMDSCLIQDRQHQEVMNRVKYWLNELNISIYNEKTKTGLIRHLV 201 Query: 105 FQIDYLTSQSDQAIVTL----IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKI 160 + Y T + VT LL + ++ + + ++ Sbjct: 202 VRTGYHTDEMMVIFVTNGATFKQSELLVNKLKKEFPNITSIKQNINNSHSNVIMGRQSMT 261 Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCG 219 +D ++++L+ + Y + SF Q N+ + + L + + +L+ YCG Sbjct: 262 LYGKDKIEDQLS----EVTYHISDLSFYQINSSQTEKLYQQALNYAQLTGKEIVLDTYCG 317 Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279 G L +A V VE+ +++ A N N + N +++ + Sbjct: 318 IGTIGLYMAPLAKHVYGVEVVPQAIKDAEDNATKNQLKNTTFECGKAEDVILTWKS---- 373 Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILST 337 + + VDPPR G D+ + + I+YISCNP + RD IL+ Sbjct: 374 --------QGIKPDVVMVDPPRKGCDETFLTTLLKLNPKRIVYISCNPSTQQRDAQILAE 425 Query: 338 THTIERLALFDQFPYTRHMECGVLLVRK 365 + + + D FP T H+E L VRK Sbjct: 426 QYELVEITPVDMFPQTTHIETVALFVRK 453 >gi|154685279|ref|YP_001420440.1| YfjO [Bacillus amyloliquefaciens FZB42] gi|154351130|gb|ABS73209.1| YfjO [Bacillus amyloliquefaciens FZB42] Length = 466 Score = 278 bits (712), Expect = 8e-73, Method: Composition-based stats. Identities = 79/395 (20%), Positives = 152/395 (38%), Gaps = 48/395 (12%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLA---FQVPNL----QIFRSEPIHYRMRAEFHIWH- 53 L Y QQL EK D + Q + F V + I P +YR +++F + Sbjct: 90 GCQLQHLAYTQQLREKRDIVIQSLERHTRFNVEEMNIKDTIGMDNPWNYRNKSQFQVGRS 149 Query: 54 DGDDLYHIMFDQQTKERMRIDYFMPGSLLINA-----------LMIEMMATIRLEPLLRA 102 + ++ + + + I + N + + + +R Sbjct: 150 QSGSIIAGLYGLDSHKIVPIKECIVQHPATNKTTGIVRRILEKHNVSVYNERTKKGDVRT 209 Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRAN------ 156 + ++ + ++ + V L+ + E +++ L K IQ + A Sbjct: 210 IVTRVGF---ETGEVQVVLVTAKETLPNKDEIVKAIQNRLPEVKSIIQNVNGARTSVIFG 266 Query: 157 -KTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWV-LAATKGIQGDLL 214 KTK + E L + + +F Q N V + + V AA + ++ Sbjct: 267 DKTKALAGSHAIQEVLG----DVSFELSARAFFQLNPEQTVKLYDEVKQAAQLTGKEKVV 322 Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274 + YCG G + ++ + +++ K S++ A+ N + + N V +++ + Sbjct: 323 DAYCGVGTIGMWVSSGAKEIRGMDVIKESIDDAKKNAKKHGIKNAAYVTGTAEHWLPKWT 382 Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDL 332 +E +R + VDPPR+G D + ++ +Y+SCNP +L +DL Sbjct: 383 KE------------GFRPDVVIVDPPRTGCDRTFLDTIKKVKPKRFVYVSCNPSTLAKDL 430 Query: 333 SILSTTHTIERLALFDQFPYTRHMECGVLLVRKPS 367 LS + +E + D FP T H+E LV K S Sbjct: 431 QTLSKDYRVEYIQPVDMFPQTAHVEAVAKLVLKSS 465 >gi|327438698|dbj|BAK15063.1| SAM-dependent methyltransferase [Solibacillus silvestris StLB046] Length = 458 Score = 278 bits (712), Expect = 9e-73, Method: Composition-based stats. Identities = 89/391 (22%), Positives = 151/391 (38%), Gaps = 42/391 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVP-------NLQIFRSEPIHYRMRAEFHIWHD 54 L YE QL K D + Q + I P HYR +++F + + Sbjct: 84 GCQLQHMTYEAQLMNKRDIVVQAFEKYAKEIGQTAEIRPTIGMDNPWHYRNKSQFQVRKE 143 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGS-----------LLINALMIEMMATIRLEPLLRAK 103 G +Y +F + T + + I+ + ++ L I + L L+R Sbjct: 144 GKRVYAGLFTEGTNQLLNINDCLVQHPVTSKITVATRKILQKLNIPIYDGKTLNGLVRTI 203 Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD 163 + + + ++ +VT R E R++ + Q + R KT + Sbjct: 204 VVRTGMRSGETQVCLVT---TRRELPHKEELIERIKKIDPSIVSITQNVNR-EKTSLIFG 259 Query: 164 RDY----VDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYC 218 D E + + +F Q N VH+ E AA + ++++ YC Sbjct: 260 PDTFILDGKEAIHEKLGEFAFDLSTRAFFQLNPEQTVHLYNEIKKAAALTGKENVVDAYC 319 Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAAN-HVNNVKIVRMSSKEFTQAMRRER 277 G G + LA V ++ ++ A+YN N ++ +V+ S+ ++ +E Sbjct: 320 GVGTIGMWLAEGAREVRGMDNVDEAIADAKYNARTNDNLQHVRFFPGSADKWLFRWSKED 379 Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLSIL 335 YR I VDPPR+GL+ + V +Y SCNP +L RDL L Sbjct: 380 ------------YRPDVICVDPPRTGLEPGFIRTVLKIKPKLFVYTSCNPSTLARDLKEL 427 Query: 336 STTHTIERLALFDQFPYTRHMECGVLLVRKP 366 S ++ +E + D FP T +EC V L K Sbjct: 428 SKSYNVEYIQPVDMFPQTAQVECVVKLTLKK 458 >gi|257865847|ref|ZP_05645500.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus casseliflavus EC30] gi|257872181|ref|ZP_05651834.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus casseliflavus EC10] gi|257799781|gb|EEV28833.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus casseliflavus EC30] gi|257806345|gb|EEV35167.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus casseliflavus EC10] Length = 458 Score = 278 bits (712), Expect = 9e-73, Method: Composition-based stats. Identities = 87/391 (22%), Positives = 152/391 (38%), Gaps = 43/391 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIF-------RSEPIHYRMRAEFHIWHD 54 L Y++QL K D L+Q + F+ Q F P HYR +A+F + ++ Sbjct: 84 GCQLQHLVYDKQLDFKKDLLKQALEKFKPKGYQQFELRDTLGMDVPWHYRNKAQFQLRYN 143 Query: 55 G--DDLYHIMFDQQTKERMRIDYFMPG-----------SLLINALMIEMMATIRLEPLLR 101 + +++ ++ + ID + L+N I + + +LR Sbjct: 144 SQTKRIEAGLYEMESHRLVAIDDCLVQEQDTQKVINGIVQLLNKYQIPIYDERKNSGILR 203 Query: 102 AKLFQIDYLTSQSDQAIVTLIYHRLLDDAW-RECAIRLRD---ALHARKYQIQLIGRANK 157 + +I T + +T +A RE RL + + + + + Sbjct: 204 TLMVRIGIATGEVQVVFITNSVKLPQKNALIREINQRLPQVVSIMQNVQNKKTSVVMGEE 263 Query: 158 TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLEL 216 T ++ ++ERL L + +F Q N + E + A +++ Sbjct: 264 TIHLWGKEAIEERL----NELTFDLSARAFFQLNPQQTSILYQEGLKALDLSKNETVVDA 319 Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276 YCG G L +A + V ++I ++E A+ N N +++E E Sbjct: 320 YCGVGTIGLSVAPYAKEVRGMDIIPQAIENAQENARRIGAQNTHYETGTAEELLPKWFNE 379 Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSI 334 ++ +I VDPPR+GLD+ + + P ++YISCN +L RDL Sbjct: 380 ------------GFKPDSIIVDPPRTGLDERLLQALLKQPPKKMVYISCNVSTLARDLVQ 427 Query: 335 LSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 L+ +E L D FP T E V L RK Sbjct: 428 LAKVFHVEYLQSVDMFPQTARCEVVVKLTRK 458 >gi|282874553|ref|ZP_06283438.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus epidermidis SK135] gi|281296692|gb|EFA89201.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus epidermidis SK135] gi|329734822|gb|EGG71127.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus epidermidis VCU028] Length = 456 Score = 278 bits (711), Expect = 9e-73, Method: Composition-based stats. Identities = 72/389 (18%), Positives = 138/389 (35%), Gaps = 40/389 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFHIWHDGD 56 L Y QL K +++ + I P YR +++ + Sbjct: 82 GCQLQHMTYRAQLDMKREQVVNLFHRKGPFENTVIKETIGMDNPWRYRNKSQIPVGQSNS 141 Query: 57 DL-YHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKL 104 + + Q++ + + +D + +N L I + L+R + Sbjct: 142 NQVIMGFYRQRSHDIIDMDSCLIQDRQHQEVMNRVKYWLNELNISIYNEKTKTGLIRHLV 201 Query: 105 FQIDYLTSQSDQAIVTL----IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKI 160 + Y T + VT LL + ++ + + ++ Sbjct: 202 VRTGYHTDEMMVIFVTNGATFKQSELLVNKLKKEFPNITSIKQNINNSHSNVIMGRQSMT 261 Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCG 219 +D ++++L+ + Y + SF Q N+ + + L + + +L+ YCG Sbjct: 262 LYGKDKIEDQLS----EVTYHISDLSFYQINSSQTEKLYQQALNYAQLTGKEIVLDTYCG 317 Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279 G L +A V VE+ +++ A N N + N +++ + Sbjct: 318 IGTIGLYMAPLAKHVYGVEVVPQAIKDAEDNATKNQLKNTTFECGKAEDVILTWKS---- 373 Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILST 337 + + VDPPR G D+ + + I+YISCNP + RD IL+ Sbjct: 374 --------QGIKPGVVMVDPPRKGCDETFLTTLLKLNPKRIVYISCNPSTQQRDAQILAE 425 Query: 338 THTIERLALFDQFPYTRHMECGVLLVRKP 366 + + + D FP T H+E L VRK Sbjct: 426 QYELVEITPVDMFPQTTHIETVALFVRKD 454 >gi|55820468|ref|YP_138910.1| TrmA family tRNA methyltransferase [Streptococcus thermophilus LMG 18311] gi|55736453|gb|AAV60095.1| tRNA methyltransferase, TrmA family [Streptococcus thermophilus LMG 18311] Length = 454 Score = 278 bits (711), Expect = 1e-72, Method: Composition-based stats. Identities = 82/386 (21%), Positives = 147/386 (38%), Gaps = 38/386 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54 L+ +Y++QL K D L Q + F+ N + I +P HYR + +F I Sbjct: 81 GCQLMHLRYDKQLEFKTDLLGQALKKFKPANFESYEIRPTIGMKQPQHYRAKLQFQIRSF 140 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----------LRAKL 104 G + +F + + + ID + L A+M ++ + L +R + Sbjct: 141 GGSVKAGLFAEGSHRLINIDDCLVQDELTQAIMNKVTNLLDKYKLPIYNERKISGIRTVM 200 Query: 105 FQIDYLTSQSDQAIVTL--IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162 + ++Q VT + L + Y + +T+I Sbjct: 201 IRRALGSNQVQLIFVTSNPVSLTKLVKELTLSYPEIVTVAVNYNYSKSSVIYGQETEIIW 260 Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNG 221 +D + E + L +F Q N + + A L++ YCG G Sbjct: 261 GQDTIQEEVLDYNFAL----SPRAFYQLNPKQTEVLYGQAVEALEVDKSEHLIDAYCGVG 316 Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281 L A+ + ++I ++E AR N + ++N +++ +E Sbjct: 317 TIGLAFAKKVSTIRGMDIIPEAIEDARKNAESLGLDNAHYEVGKAEDIIPRWYKE----- 371 Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTTH 339 YR + VDPPR+GLD + + Y ++Y+SCN +L RDL L+ + Sbjct: 372 -------GYRADALIVDPPRTGLDSKLLKTILEYTPKKMVYVSCNVSTLARDLVSLAKVY 424 Query: 340 TIERLALFDQFPYTRHMECGVLLVRK 365 + + D FP+T E V L +K Sbjct: 425 DVNYIQSVDMFPHTARTEAVVKLTKK 450 >gi|303240517|ref|ZP_07327033.1| RNA methyltransferase, TrmA family [Acetivibrio cellulolyticus CD2] gi|302591919|gb|EFL61651.1| RNA methyltransferase, TrmA family [Acetivibrio cellulolyticus CD2] Length = 552 Score = 278 bits (711), Expect = 1e-72, Method: Composition-based stats. Identities = 83/390 (21%), Positives = 150/390 (38%), Gaps = 35/390 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56 +L + L K + + + + + + I +P++YR +A++ + D Sbjct: 88 GCSLQHMSTQAALRFKTELVTENIRRIGKLQDVIVHDTIGMQKPLNYRNKAQYPVGKLND 147 Query: 57 DLYHIMFDQQTKERMRIDYFMPGS-------LLINALMIEMMATIRLEPLLRAKLFQIDY 109 +L + +++ + + M L++ + E ++ E + + + Sbjct: 148 ELKVGFYAKKSHDIIDSPICMIQHSVSDRAKLIVKEFLKENNISVYDETTGKGLVRHVMT 207 Query: 110 LTS-QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR---- 164 T + + ++ L+ + + L L K I I N T I L Sbjct: 208 RTGFNTGEIMIVLVLNGKSLPEQDKLVKLLTGELPEIKSIILNINTMN-TNIILGTRNIV 266 Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNF 223 + +E +T ++ SF Q N + L A Q + +LYCG G Sbjct: 267 IFGEETITDYIGKFKFKISPLSFFQVNPVQTEVLYNKALEYAGLTGQETVFDLYCGIGTI 326 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 SL L+ +V VE+ + +V A+ N N V NV+ ++ M Sbjct: 327 SLFLSEKTKKVYGVEVVEEAVRDAKVNAGVNGVENVEFFVGEAERVIPEMYS-------- 378 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST-THT 340 + + VDPPR G D + + I+Y+SCNP +L RDL L+ Sbjct: 379 ----KGIKADVVVVDPPRKGCDQVLLETLVSMEPRRIVYVSCNPATLARDLGFLTERGFK 434 Query: 341 IERLALFDQFPYTRHMECGVLLV-RKPSGW 369 + + D FP+T H+E VLL +KPS Sbjct: 435 VLEVQPVDMFPWTAHVETVVLLSQQKPSDK 464 >gi|197302873|ref|ZP_03167925.1| hypothetical protein RUMLAC_01602 [Ruminococcus lactaris ATCC 29176] gi|197298110|gb|EDY32658.1| hypothetical protein RUMLAC_01602 [Ruminococcus lactaris ATCC 29176] Length = 555 Score = 278 bits (711), Expect = 1e-72, Method: Composition-based stats. Identities = 85/391 (21%), Positives = 145/391 (37%), Gaps = 37/391 (9%) Query: 2 SGTLLID-QYEQQLAEKVDRLRQMMLAFQ---------VPNLQIFRSEPIHYRMRAEFHI 51 G + + YE+QLA K ++R + V EP YR +A+F Sbjct: 79 GGCQIQEMSYERQLAFKEQKIRGNLERIGGFDRGKIDAVMEPVEGMDEPFRYRNKAQFPF 138 Query: 52 WHDG-DDLYHIMFDQQTKERMRIDYFMPGSLLINAL-----------MIEMMATIRLEPL 99 D + + +T + + + G + + + L Sbjct: 139 GTDKEGNPVTGFYAGRTHDIIANTECILGVEQNREILEIILQYMKENCVAAYDEKSGKGL 198 Query: 100 LRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRD---ALHARKYQIQLIGRAN 156 +R L + + T + +V D + +L + + + N Sbjct: 199 IRHVLIRYGFTTKEIMVCLVINGTKLPKADRLIKKLTQLEGMTSITLSPNTRRDNVIMGN 258 Query: 157 KTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLE 215 ++ + ++ + + + Y+ SF Q N + L A + + Sbjct: 259 SYEVLWGQGFITDYIG----NVKYQISPLSFYQVNPVQTEKLYGLALEYADLKGTETVWD 314 Query: 216 LYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275 LYCG G SL LA+ +V VEI ++E A+ N N +NN ++E Sbjct: 315 LYCGIGTISLFLAQKAKQVYGVEIVPQAIEDAKNNAKINEINNAAFYVGKAEEVLPDYYE 374 Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCRDLS 333 E K R I VDPPR G D+ + +V+ P ++Y+SC+ +L RDL Sbjct: 375 EYA----KTHGGEKARADVIVVDPPRKGCDETLLETIVKMEPEKVVYVSCDSATLARDLK 430 Query: 334 ILST-THTIERLALFDQFPYTRHMECGVLLV 363 L + I ++ DQFP T H+E VLL Sbjct: 431 YLCENGYEIRKVRGVDQFPETVHVETVVLLS 461 >gi|239631838|ref|ZP_04674869.1| conserved hypothetical protein [Lactobacillus paracasei subsp. paracasei 8700:2] gi|239526303|gb|EEQ65304.1| conserved hypothetical protein [Lactobacillus paracasei subsp. paracasei 8700:2] Length = 453 Score = 278 bits (711), Expect = 1e-72, Method: Composition-based stats. Identities = 87/381 (22%), Positives = 161/381 (42%), Gaps = 38/381 (9%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQV---PNLQIFRSEPIHYRMRAEFHIWHDGDDLYHI 61 L I Y QL K +++++ + I + P+ YR +A+ + +L Sbjct: 87 LSILAYPAQLQFKQKQIQELYKKAHLDIAVLPTIGMTNPLGYRNKAQVPVRTVNGELQTG 146 Query: 62 MFDQQTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKLFQIDYL 110 + + + + + I+ F+ I+ ++ + +R + ++R + + + Sbjct: 147 FYKKHSHDLVPIEDFLIQDPKIDQAIVVVRDLLRKYHVPAYDERANKGVIRNIMVRRGHY 206 Query: 111 TSQSDQAIVTLIYHRL-LDDAWRECAIRLRDALHAR---KYQIQLIGRANKTKICLDRDY 166 T Q +V+ + L D E + L + + + K++ DY Sbjct: 207 TKQMMIVLVSQTWQVPHLKDIVEEITLALPEVTSVVVNLNDKRTNVILGRKSRTIYGEDY 266 Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELYCGNGNFSL 225 + ++L + ++ SF Q N + + + AA + ++++ Y G G SL Sbjct: 267 LLDKLLGSE----FQISPVSFYQVNPVQTEVLYKKAIEAAGLTGKENVIDAYSGIGTISL 322 Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285 +ARH V VE+ +P+V AR N NH++NV ++E Q + N L Sbjct: 323 TMARHAKHVYGVEVVEPAVRDARANAVRNHIDNVTFEVGKAEEVIQRWKD----NELP-- 376 Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST-THTIE 342 + VDPPR GLD + + V P I+Y+SCNP +L RDL +L+ +T + Sbjct: 377 ------VDVLMVDPPRKGLDKSFIDAVGYMKPPKIVYVSCNPATLARDLQLLAAFGYTAK 430 Query: 343 RLALFDQFPYTRHMECGVLLV 363 D FP T+H+E L Sbjct: 431 ETQPVDMFPQTQHIESITALT 451 >gi|329726919|gb|EGG63377.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus epidermidis VCU144] Length = 456 Score = 278 bits (710), Expect = 1e-72, Method: Composition-based stats. Identities = 72/389 (18%), Positives = 138/389 (35%), Gaps = 40/389 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFHIWHDGD 56 L Y QL K +++ + I P YR +++ + Sbjct: 82 GCQLQHMTYRAQLDMKREQVVNLFHRKGPFENTVIKETIGMDNPWRYRNKSQIPVGQSNS 141 Query: 57 DL-YHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKL 104 + + Q++ + + +D + +N L I + L+R + Sbjct: 142 NQVIMGFYRQRSHDIIDMDSCLIQDRQHQEVMNRVKYWLNELNISIYNEKTKTGLIRHLV 201 Query: 105 FQIDYLTSQSDQAIVTL----IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKI 160 + Y T + VT LL + ++ + + ++ Sbjct: 202 VRTGYHTDEMMVIFVTNGATFKQSELLVNKLKKEFPNITSIKQNINNSHSNVIMGRQSMT 261 Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCG 219 +D ++++L+ + Y + SF Q N+ + + L + + +L+ YCG Sbjct: 262 LYGKDKIEDQLS----EVTYHISDLSFYQINSSQTEKLYQQALNYAQLTGKEIVLDTYCG 317 Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279 G L +A V VE+ +++ A N N + N +++ + Sbjct: 318 IGTIGLYMAPLAKHVYGVEVVPQAIKDAEDNATKNQLKNTTFEYGKAEDVILTWKS---- 373 Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILST 337 + + VDPPR G D+ + + I+YISCNP + RD IL+ Sbjct: 374 --------QGIKPDVVMVDPPRKGCDETFLTTLLKLNPKRIVYISCNPSTQQRDAQILAE 425 Query: 338 THTIERLALFDQFPYTRHMECGVLLVRKP 366 + + + D FP T H+E L VRK Sbjct: 426 QYELVEITPVDMFPQTTHIETVALFVRKD 454 >gi|227535460|ref|ZP_03965509.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227186870|gb|EEI66937.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 457 Score = 278 bits (710), Expect = 1e-72, Method: Composition-based stats. Identities = 87/381 (22%), Positives = 161/381 (42%), Gaps = 38/381 (9%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQV---PNLQIFRSEPIHYRMRAEFHIWHDGDDLYHI 61 L I Y QL K +++++ + I + P+ YR +A+ + +L Sbjct: 90 LSILAYPAQLQFKQKQIQELYKKAHLDIAVLPTIGMTNPLGYRNKAQVPVRTVNGELQTG 149 Query: 62 MFDQQTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKLFQIDYL 110 + + + + + I+ F+ I+ ++ + +R + ++R + + + Sbjct: 150 FYKKHSHDLVPIEDFLIQDPKIDQAIVVVRDLLRKYHVPAYDERANKGVIRNIMVRRGHY 209 Query: 111 TSQSDQAIVTLIYHRL-LDDAWRECAIRLRDALHAR---KYQIQLIGRANKTKICLDRDY 166 T Q +V+ + L D E + L + + + K++ DY Sbjct: 210 TKQMMIVLVSQTWQVPHLKDIVEEITLALPEVTSVVVNLNDKRTNVILGRKSRTIYGEDY 269 Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELYCGNGNFSL 225 + ++L + ++ SF Q N + + + AA + ++++ Y G G SL Sbjct: 270 LLDKLLGSE----FQISPVSFYQVNPVQTEVLYKKAIEAAGLTGKENVIDAYSGIGTISL 325 Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285 +ARH V VE+ +P+V AR N NH++NV ++E Q + N L Sbjct: 326 TMARHAKHVYGVEVVEPAVRDARANAVRNHIDNVTFEVGKAEEVIQRWKD----NELP-- 379 Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST-THTIE 342 + VDPPR GLD + + V P I+Y+SCNP +L RDL +L+ +T + Sbjct: 380 ------VDVLMVDPPRKGLDKSFIDAVGYMKPPKIVYVSCNPATLARDLQLLAAFGYTAK 433 Query: 343 RLALFDQFPYTRHMECGVLLV 363 D FP T+H+E L Sbjct: 434 ETQPVDMFPQTQHIESITALT 454 >gi|90962313|ref|YP_536229.1| tRNA (Uracil-5-) -methyltransferase [Lactobacillus salivarius UCC118] gi|90821507|gb|ABE00146.1| tRNA (Uracil-5-) -methyltransferase [Lactobacillus salivarius UCC118] Length = 459 Score = 278 bits (710), Expect = 1e-72, Method: Composition-based stats. Identities = 73/380 (19%), Positives = 156/380 (41%), Gaps = 40/380 (10%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 Y QL K + ++ + NL++ P +YR +A+ + L F Sbjct: 92 SYPAQLKFKRKLVTDLLQKVHLDNLEVADTLGMETPYYYRNKAQVPVREVNGKLEIGFFK 151 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-----------LRAKLFQIDYLTSQ 113 + + + + +++F+ I+ ++I++ +R+ + +R L + Y + + Sbjct: 152 RNSHDFVAMEHFLIQDKRIDEILIKVRDILRMSKITAYNEEKHTGMIRHILVRRGYYSHE 211 Query: 114 SDQAIVTLIYHRLLDDAW----RECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDE 169 + +V+ + D ++ ++ + + KT +D + + Sbjct: 212 AMVVLVSRVRKIPNLDQIAFLIQQQCPDVKSVMLNVNPDKTNVILGKKTIKLAGKDTIQD 271 Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNFSLVLA 228 L L + SF Q N + + + A + +++ YCG G SL +A Sbjct: 272 TL----NGLKFDISAQSFYQVNPQQTEKLYQLAIENAELTGKETVIDAYCGIGTISLNMA 327 Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288 + +V VEI ++E A++N + N ++N+ ++ + + ++ Sbjct: 328 KFAKKVYGVEIVPEAIEDAKHNASLNDLDNLDFEVGEAEVWMEKWQK------------Q 375 Query: 289 SYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLS-ILSTTHTIER-L 344 + I VDPPR GL + + A ++Y+SCNP +L RD+ + + + + + Sbjct: 376 GIKPDVIMVDPPRKGLTSSLIQSAVAMEPKKVVYVSCNPATLVRDIQEFMELGYQVTKSI 435 Query: 345 ALFDQFPYTRHMECGVLLVR 364 DQFP T H+E +L R Sbjct: 436 QPVDQFPQTTHVESVTVLER 455 >gi|16803743|ref|NP_465228.1| hypothetical protein lmo1703 [Listeria monocytogenes EGD-e] gi|224499575|ref|ZP_03667924.1| hypothetical protein LmonF1_07712 [Listeria monocytogenes Finland 1988] gi|224503372|ref|ZP_03671679.1| hypothetical protein LmonFR_12800 [Listeria monocytogenes FSL R2-561] gi|254829227|ref|ZP_05233914.1| RNA methyltransferase [Listeria monocytogenes FSL N3-165] gi|254832408|ref|ZP_05237063.1| hypothetical protein Lmon1_13719 [Listeria monocytogenes 10403S] gi|254900792|ref|ZP_05260716.1| hypothetical protein LmonJ_13289 [Listeria monocytogenes J0161] gi|254913722|ref|ZP_05263734.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria monocytogenes J2818] gi|254938109|ref|ZP_05269806.1| RNA methyltransferase [Listeria monocytogenes F6900] gi|50401633|sp|Q8Y6I1|Y1703_LISMO RecName: Full=Uncharacterized RNA methyltransferase lmo1703 gi|16411157|emb|CAC99781.1| lmo1703 [Listeria monocytogenes EGD-e] gi|258601638|gb|EEW14963.1| RNA methyltransferase [Listeria monocytogenes FSL N3-165] gi|258610721|gb|EEW23329.1| RNA methyltransferase [Listeria monocytogenes F6900] gi|293591737|gb|EFG00072.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria monocytogenes J2818] Length = 459 Score = 278 bits (710), Expect = 1e-72, Method: Composition-based stats. Identities = 81/390 (20%), Positives = 143/390 (36%), Gaps = 40/390 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54 L Y QL K D + Q + + I +P YR +++F Sbjct: 84 GCQLQHVAYSAQLELKRDIVIQSIEKHTKIDPTKLKIRPTIGMEDPWRYRNKSQFQTRMV 143 Query: 55 GDDLYH-IMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRA 102 G +F + + + I+ + L+ + + ++R Sbjct: 144 GSGQVETGLFGANSHQLVPIEDCIVQQPVTIKVTNFVRDLLEKYGVPIYDEKAGSGIVRT 203 Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162 + + T ++ +T + L RE + AL +Q + +A + I Sbjct: 204 IVVRTGVKTGETQLVFITN--SKKL-PKKREMLAEIEAALPEVTSIMQNVNQAKSSLIFG 260 Query: 163 DRDYV---DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYC 218 D ++ E + L + +F Q N + + V A + L++ YC Sbjct: 261 DETFLLAGKESIEEKLMELEFDLSARAFFQLNPFQTERLYQEVEKALVLTGSETLVDAYC 320 Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278 G G A V ++I S+E A+ N N + NV +++ +E Sbjct: 321 GVGTIGQAFAGKVKEVRGMDIIPESIEDAKRNAEKNGIENVYYEVGKAEDVLPKWVKE-- 378 Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILS 336 +R + VDPPRSG D + + ++Y+SCNP +L RDL++L+ Sbjct: 379 ----------GFRPDAVIVDPPRSGCDQGLIKSLLDVEAKQLVYVSCNPSTLARDLALLA 428 Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVRKP 366 + I + D FP T H+E VLL K Sbjct: 429 KKYRIRYMQPVDMFPQTAHVETVVLLQLKD 458 >gi|328946582|gb|EGG40721.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis SK1087] Length = 465 Score = 278 bits (710), Expect = 1e-72, Method: Composition-based stats. Identities = 78/385 (20%), Positives = 160/385 (41%), Gaps = 40/385 (10%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAF-QVPNLQI----FRSEPIHYRMRAEFHIWHDGDDLY 59 L Y QL K +++ + + ++++ +P+ YR +A+ + L Sbjct: 96 LGHLNYSAQLDFKRKQVKDSLYKIAGLSDVEVLPTLGMEQPLGYRNKAQVPVRRVNGQLE 155 Query: 60 HIMFDQQTKERMRIDYFMPGSLLINALMI---EMMATIRLEP--------LLRAKLFQID 108 F + + + + I+ F +I+ +++ +++ L+P L+R + + Sbjct: 156 TGFFRKNSHDLLPIEDFYIQDPVIDQVILFTRDLLRRFDLKPYDEQEKTGLIRNLVVRRG 215 Query: 109 YLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR 164 + + + +VT + L + E ++ + Q + + Sbjct: 216 HYSGEIMLILVTTRPKIFRVEQLMERLTEAFPAIKSIMQNINDQPGNAIFGKDWRTLYGQ 275 Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNF 223 DY+ +R+ ++ +F Q N + + + + ++ D+ L+ Y G G Sbjct: 276 DYITDRMLGND----FQISGPAFYQVNTEMAEKLYQTAIDFSELTADDVVLDAYSGIGTI 331 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 L +A+H V VE+ +VE ++ N A N + N V ++E Q +E Sbjct: 332 GLSVAKHVKAVYGVEVIPEAVENSQKNAAVNGITNASYVCAPAEEAIQNWLKE------- 384 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGM-VQAYP-HILYISCNPDSLCRDLSILST-THT 340 + I VDPPR GL ++ + V P I YISCN ++ RD+ + + Sbjct: 385 -----GIQADVILVDPPRKGLTESFIKASVSMEPKKITYISCNVATMARDIKLYRELGYE 439 Query: 341 IERLALFDQFPYTRHMECGVLLVRK 365 ++++ D FP T H+EC LLV++ Sbjct: 440 LKKVQPVDLFPQTHHVECVSLLVKR 464 >gi|169825906|ref|YP_001696064.1| putative RNA methyltransferase [Lysinibacillus sphaericus C3-41] gi|168990394|gb|ACA37934.1| Hypothetical RNA methyltransferase [Lysinibacillus sphaericus C3-41] Length = 462 Score = 278 bits (710), Expect = 1e-72, Method: Composition-based stats. Identities = 87/390 (22%), Positives = 153/390 (39%), Gaps = 41/390 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54 L YE+QL EK D + Q + + P + + P HYR +++F + + Sbjct: 88 GCQLQHMTYEKQLLEKRDIVIQALERYAKPLAETVEVRKTLGMDNPWHYRNKSQFQVRKE 147 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGS-----------LLINALMIEMMATIRLEPLLRAK 103 G +Y +F + + + + I+ + ++ L I + L+ L+R Sbjct: 148 GKRVYAGLFAEGSNKLLNINDCLVQHPVTSKITVATRKILQKLNITIYDGRTLDGLVRTI 207 Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD 163 + + T ++ +VT R E R++ + Q I R KT + Sbjct: 208 VVRTGIRTGETQVVLVT---TRKEIPHLAELITRIKKIDPSIVSIAQNINR-EKTSLIFG 263 Query: 164 RDYV----DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELYC 218 + + E + L + +F Q N VH+ + + AA + +++ YC Sbjct: 264 DETIVLDGKETIHEELGELAFDLSARAFFQLNPTQTVHLYDEIKKAAALTGKESVVDAYC 323 Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278 G G L LA V +++ S++ AR N + + K +++ R+E Sbjct: 324 GVGTVGLWLADQAAEVRGMDVIPESIQDARKNARNHGFKHTKYAVGTAESVLSKWRKE-- 381 Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILS 336 + I VDPPR+GL + V +Y SCNP +L +DL LS Sbjct: 382 ----------GFTPDVITVDPPRTGLASEFIQTVLKLRPKRFVYTSCNPSTLAKDLQQLS 431 Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVRKP 366 + +E + D F T +EC LV K Sbjct: 432 KHYHVEYIQPVDMFSQTAQVECVAKLVLKN 461 >gi|284802149|ref|YP_003414014.1| hypothetical protein LM5578_1904 [Listeria monocytogenes 08-5578] gi|284995291|ref|YP_003417059.1| hypothetical protein LM5923_1856 [Listeria monocytogenes 08-5923] gi|284057711|gb|ADB68652.1| hypothetical protein LM5578_1904 [Listeria monocytogenes 08-5578] gi|284060758|gb|ADB71697.1| hypothetical protein LM5923_1856 [Listeria monocytogenes 08-5923] Length = 462 Score = 278 bits (710), Expect = 1e-72, Method: Composition-based stats. Identities = 79/388 (20%), Positives = 143/388 (36%), Gaps = 40/388 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54 L Y QL K D + Q + + I +P YR +++F Sbjct: 84 GCQLQHVAYSAQLELKRDIVIQSIEKHTKIDPTKLKIRPTIGMEDPWRYRNKSQFQTRMV 143 Query: 55 GDDLYH-IMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRA 102 G +F + + + I+ + L+ + + ++R Sbjct: 144 GSGQVETGLFGANSHQLVPIEDCIVQQPVTIKVTNFVRDLLEKYGVPIYDEKAGSGIVRT 203 Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162 + + T ++ +T + L RE + AL +Q + +A + I Sbjct: 204 IVVRTGVKTGETQLVFITN--SKKL-PKKREMLAEIEAALPEVTSIMQNVNQAKSSLIFG 260 Query: 163 DRDYV---DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYC 218 D ++ E + L + +F Q N + + V A + L++ YC Sbjct: 261 DETFLLAGKESIEEKLMELEFDLSARAFFQLNPFQTERLYQEVEKALVLTGSETLVDAYC 320 Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278 G G A V ++I S+E A+ N N + NV +++ +E Sbjct: 321 GVGTIGQAFAGKVKEVRGMDIIPESIEDAKRNAEKNGIENVYYEVGKAEDVLPKWVKE-- 378 Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILS 336 +R + VDPPRSG D + + ++Y+SCNP +L RDL++L+ Sbjct: 379 ----------GFRPDAVIVDPPRSGCDQGLIKSLLDVEAKQLVYVSCNPSTLARDLALLA 428 Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVR 364 + I + D FP T H+E +L+ R Sbjct: 429 KKYRIRYMQPVDMFPQTAHVETVILMTR 456 >gi|291562412|emb|CBL41228.1| 23S rRNA (uracil-5-)-methyltransferase RumA [butyrate-producing bacterium SS3/4] Length = 607 Score = 278 bits (710), Expect = 1e-72, Method: Composition-based stats. Identities = 79/387 (20%), Positives = 145/387 (37%), Gaps = 43/387 (11%) Query: 2 SGTLLID-QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDD-LY 59 G +D YE+QL K + +++ F I +P HYR + + D + Sbjct: 146 GGCQYLDMPYEKQLEHKKKEVSELLRPFCRVEEIIGMDDPFHYRNKVHAVMARDRKGHII 205 Query: 60 HIMFDQQTKERMRIDYFMPGS-----------LLINALMIEMMATIRLEPLLRAKLFQID 108 ++ + T + ++ + + L+ + +++ LR L + Sbjct: 206 SGVYKEGTHTVLPVETCLIENKKADEIIGTIRELLPSFKMKVFDEDTGYGFLRHVLVRTA 265 Query: 109 YLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGR-------ANKTKIC 161 + T + +V LI + + LR +Q + K + Sbjct: 266 HATG---EIMVVLITASPVFPSKNNFVKALRKIHPEITTVVQNVNGRDTSMVLGEKEHVL 322 Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGN 220 ++ + L +R SF Q N + + A + +++ YCG Sbjct: 323 YGPGFIVDVLCGK----KFRISSKSFYQINPVQTEKLYNLAIEAAGLTGKETVVDAYCGI 378 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G +V A V+ VE+ K +V A N AN N++ + +F M Sbjct: 379 GTIGIVAASAAKEVIGVELNKDAVRDAVTNAKANGEKNIRFYNNDAGKFMVQMAS----- 433 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVG--MVQAYPHILYISCNPDSLCRDLSIL-ST 337 + +F+DPPRSG + + + ++Y+SCNP++L RDL+ Sbjct: 434 -------QNAHADVVFMDPPRSGSTEEFMDAVAILNPDRVVYVSCNPETLARDLAYFKKK 486 Query: 338 THTIERLALFDQFPYTRHMECGVLLVR 364 + E+ DQFP T H+E VLL + Sbjct: 487 GYRAEKAWAVDQFPATSHVETVVLLSK 513 >gi|325687169|gb|EGD29191.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis SK72] Length = 464 Score = 278 bits (710), Expect = 1e-72, Method: Composition-based stats. Identities = 78/384 (20%), Positives = 159/384 (41%), Gaps = 40/384 (10%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAF-QVPNLQI----FRSEPIHYRMRAEFHIWHDGDDLY 59 L Y QL K +++ + + ++++ +P+ YR +A+ + L Sbjct: 96 LGHLNYSAQLDFKRKQVKDSLYKIAGLSDVEVLPTLGMEQPLGYRNKAQVPVRRVNGQLE 155 Query: 60 HIMFDQQTKERMRIDYFMPGSLLINALMI---EMMATIRLEP--------LLRAKLFQID 108 F + + + + I+ F +I+ +++ +++ L+P L+R + + Sbjct: 156 TGFFRKNSHDLLPIEDFYIQDPVIDQVILFTRDLLRRFDLKPYDEQEKTGLIRNLVVRRG 215 Query: 109 YLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR 164 + + + +VT + L + E ++ + Q + + Sbjct: 216 HYSGEIMLILVTTRPKIFRVEQLMERLTEAFPAIKSIMQNINDQPGNAIFGKDWRTLYGQ 275 Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNF 223 DY+ +R+ ++ +F Q N + + + + ++ D+ L+ Y G G Sbjct: 276 DYITDRMLGND----FQISGPAFYQVNTEMAEKLYQTAIDFSELTADDVVLDAYSGIGTI 331 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 L +A+H V VE+ +VE ++ N A N + N V ++E Q +E Sbjct: 332 GLSVAKHVKAVYGVEVIPEAVENSQKNAAVNGITNASYVCAPAEEAIQNWLKE------- 384 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGM-VQAYP-HILYISCNPDSLCRDLSILST-THT 340 + I VDPPR GL ++ + V P I YISCN ++ RD+ + + Sbjct: 385 -----GIQADVILVDPPRKGLTESFIKASVSMEPKKITYISCNVATMARDIKLYRELGYE 439 Query: 341 IERLALFDQFPYTRHMECGVLLVR 364 ++++ D FP T H+EC LLV+ Sbjct: 440 LKKVQPVDLFPQTHHVECVALLVK 463 >gi|217964147|ref|YP_002349825.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria monocytogenes HCC23] gi|217333417|gb|ACK39211.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria monocytogenes HCC23] gi|307571286|emb|CAR84465.1| RNA methyltransferase, TrmA/RumA/YfjO family [Listeria monocytogenes L99] Length = 458 Score = 278 bits (710), Expect = 1e-72, Method: Composition-based stats. Identities = 81/390 (20%), Positives = 143/390 (36%), Gaps = 40/390 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL-------QIFRSEPIHYRMRAEFHIWHD 54 L Y QL K D + Q + + I +P YR +++F Sbjct: 84 GCQLQHVAYSAQLELKRDIVIQSIEKHTKIDPAKLKIRPTIGMEDPWRYRNKSQFQTRMV 143 Query: 55 GDDLYH-IMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRA 102 G +F + + + I+ + L+ + + ++R Sbjct: 144 GSGQVETGLFGANSHQLVPIEDCIVQQPVTIKVTNFVRDLLEKYGVPIYDEKAGSGIVRT 203 Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162 + + T ++ +T + L RE + AL +Q + +A + I Sbjct: 204 IVVRTGVKTGETQLVFITN--SKKL-PKKREMLAEIEAALPEVTSIMQNVNQAKSSLIFG 260 Query: 163 DRDYV---DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYC 218 D ++ E + L + +F Q N + + V A + L++ YC Sbjct: 261 DETFLLAGKESIEEKLMELEFDLSARAFFQLNPFQTERLYQEVEKALVLTGSETLVDAYC 320 Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278 G G A V ++I S+E A+ N N + NV +++ +E Sbjct: 321 GVGTIGQAFAGKVKEVRGMDIIPESIEDAKRNAEKNGIENVYYEVGKAEDVLPKWVKE-- 378 Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILS 336 +R + VDPPRSG D + + ++Y+SCNP +L RDL++L+ Sbjct: 379 ----------GFRPDAVIVDPPRSGCDQGLIKSLLDVEAKQLVYVSCNPSTLARDLALLA 428 Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVRKP 366 + I + D FP T H+E VLL K Sbjct: 429 KKYRIRYMQPVDMFPQTAHVETVVLLQLKN 458 >gi|94994593|ref|YP_602691.1| 23S rRNA m(5)U 1939 methyltransferase [Streptococcus pyogenes MGAS10750] gi|94548101|gb|ABF38147.1| 23S rRNA m(5)U 1939 methyltransferase [Streptococcus pyogenes MGAS10750] gi|332001949|gb|AED99120.1| 23S rRNA m(5)U 1939 methyltransferase [Streptococcus pyogenes] Length = 463 Score = 278 bits (710), Expect = 1e-72, Method: Composition-based stats. Identities = 78/380 (20%), Positives = 146/380 (38%), Gaps = 40/380 (10%) Query: 10 YEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 YE QL K +++ + I +EP+ YR +A+ + L F Sbjct: 99 YEDQLTFKKKQVQDSLYKIAGISDVTVESTIGMTEPLAYRNKAQVPVRRVNGQLETGFFR 158 Query: 65 QQTKERMRIDYFMPGSLLINAL-----------MIEMMATIRLEPLLRAKLFQIDYLTSQ 113 + + + + I + I+ L I+ LLR + + + + Sbjct: 159 KHSHDLIPISDYYIQDKEIDRLINFTRDLLRRFDIKPYDETEQTGLLRNIVVRRGHYSG- 217 Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD----YVDE 169 + ++ L+ R + ++ +A A IQ I N T +D Y + Sbjct: 218 --EMMLVLVTTRPKVFRVDQVIEKIVEAFPAVVSIIQNINDKN-TNAIFGKDFKTLYGKD 274 Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLA 228 +T + Y SF Q N + + + +A + + D +++ Y G G L A Sbjct: 275 TITDSMLGNNYAISAQSFYQVNTIMAEKLYQTAIAFSDLSKDDIVIDAYSGIGTIGLSFA 334 Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288 + V VE+ + +V A+ N A N + N + +++ ++ Sbjct: 335 KTVKAVYGVEVIEAAVRDAQQNAALNGITNAYFIADTAEHAMATWAKD------------ 382 Query: 289 SYRFKTIFVDPPRSGLDDATVGM--VQAYPHILYISCNPDSLCRDLSILST-THTIERLA 345 + I VDPPR GL ++ + I Y+SCNP ++ RD+ + + ++ Sbjct: 383 GIKPSVILVDPPRKGLTESFIQASVAMGPQKITYVSCNPATMARDIKRYQELGYKLTKVQ 442 Query: 346 LFDQFPYTRHMECGVLLVRK 365 D FP T H+EC LL ++ Sbjct: 443 PVDLFPQTHHVECVSLLEKR 462 >gi|228476539|ref|ZP_04061226.1| 23S rRNA-methyltransferase RumA [Streptococcus salivarius SK126] gi|228251845|gb|EEK10896.1| 23S rRNA-methyltransferase RumA [Streptococcus salivarius SK126] Length = 451 Score = 278 bits (710), Expect = 1e-72, Method: Composition-based stats. Identities = 83/386 (21%), Positives = 146/386 (37%), Gaps = 38/386 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54 L+ +Y++QL K D L Q + F+ N + I +P HYR + +F Sbjct: 81 GCQLMHLRYDKQLEFKTDLLGQALKKFKPANFESYDIRPTIGMEQPQHYRAKLQFQTRSF 140 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGSLL---INALMIEMMATIRLEPLLRAKLFQIDYLT 111 G + +F + + + ID + L I + ++ + K+ I + Sbjct: 141 GSSVKSGLFAEGSHRLINIDDCLVQDELTQVIMNKVTNLLDKYKFPIYNERKISGIRTVM 200 Query: 112 SQ----SDQAIVTLIYHR-----LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162 + S+Q + + + L E + Y +T+I Sbjct: 201 IRRALGSNQVQLIFVTSKSVSFTKLVKELTESFPEIVTIAVNYNYSKSSEIYGQETEILW 260 Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNG 221 +D + E + L +F Q N + + A G L++ YCG G Sbjct: 261 GQDTIQEEVLDYNFAL----SPRAFYQLNPQQTEVLYGQAVEALDVGKAEHLIDAYCGVG 316 Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281 L A + ++I ++E AR N + + N +++ +E Sbjct: 317 TIGLAFANKVKSIRGMDIIPEAIEDARKNAKSLGLENAHYEVGKAEDIIPRWYKE----- 371 Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTTH 339 YR + VDPPR+GLDD + + AY ++Y+SCN +L RDL L+ + Sbjct: 372 -------GYRADALIVDPPRTGLDDKLLKTILAYTPEKMVYVSCNVSTLARDLVSLAKVY 424 Query: 340 TIERLALFDQFPYTRHMECGVLLVRK 365 + + D FP+T E V L +K Sbjct: 425 DVNYIQSVDMFPHTARTEAVVKLTKK 450 >gi|222823969|ref|YP_002575543.1| tRNA (uracil-5-)-methyltransferase [Campylobacter lari RM2100] gi|262827649|sp|B9KCK3|TRMA_CAMLR RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|222539191|gb|ACM64292.1| tRNA (uracil-5-)-methyltransferase [Campylobacter lari RM2100] Length = 346 Score = 278 bits (710), Expect = 1e-72, Method: Composition-based stats. Identities = 127/353 (35%), Positives = 208/353 (58%), Gaps = 13/353 (3%) Query: 15 AEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWH-DGDDLYHIMFDQQTKERMRI 73 EK+ + + + +Q F+S YR RAEF I+H + ++ + M+ + K+++ I Sbjct: 4 EEKIALNKALFSSLYDKEIQCFKSPLKAYRTRAEFCIYHHENGEISYAMY--ENKKKIPI 61 Query: 74 DYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRE 133 F I A M ++ L L+ KLF +++L ++ D +I TL+YH+ ++ ++ Sbjct: 62 KNFEIADEKIQAYMPILLD--NLNENLKHKLFGVEFLATKIDLSI-TLLYHKNIESITQD 118 Query: 134 CAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAG 193 ++K ++LI R+ K+ + + + + L + + + Y + F QPN Sbjct: 119 LQE------LSKKLNLKLIARSRGKKLVFNGENLKQILNIKNKEIFYEFNNDCFIQPNTT 172 Query: 194 INVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIA 252 IN M+EWV+ K + DLLELYCG GNF++ LA++F+++LA EI+K ++E A N Sbjct: 173 INEKMIEWVIDLLEKEERKDLLELYCGYGNFTIALAKYFNKILATEISKKNIEFALKNCD 232 Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312 N + N+ R+SS+E +QA+++EREFNRLK ID+ + + VDPPR+GLD + + ++ Sbjct: 233 LNSIKNISFTRLSSEELSQALKKEREFNRLKGIDLDGFNISHVLVDPPRAGLDVSVIELI 292 Query: 313 QAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 + Y +I+YISCNP +L +L ILS +H I LA FDQF T H+ECGV L K Sbjct: 293 KKYENIIYISCNPITLRENLEILSQSHEILNLAFFDQFANTSHLECGVHLRLK 345 >gi|313637500|gb|EFS02936.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria seeligeri FSL S4-171] Length = 459 Score = 278 bits (710), Expect = 1e-72, Method: Composition-based stats. Identities = 79/392 (20%), Positives = 143/392 (36%), Gaps = 42/392 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54 L Y QL K D + Q + + Q I +P YR +++F Sbjct: 84 GCQLQHVAYSTQLELKRDIVIQSIEKHTKIDPQKLNIRATIGMEDPWRYRNKSQFQTRLV 143 Query: 55 GDDLYH-IMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRA 102 G +F + + + I+ + L+ + + ++R Sbjct: 144 GSGQVETGLFGVNSHQLVPIEDCIVQQPVTIKVTNFVRDLLEKYGVPIYDEKAGSGIVRT 203 Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162 + + T ++ +T + L RE + AL +Q + +A K+ I Sbjct: 204 LVVRTGIKTGETQLVFITN--SKKL-PKKREMLAEIEAALPEVTSIMQNVNQA-KSSIIF 259 Query: 163 DRD----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELY 217 + E + L + +F Q N + + V A + L++ Y Sbjct: 260 GEETFLLAGKESIHEKLMELEFDLSARAFFQLNPFQTERLYQEVEKALVLTGSETLVDAY 319 Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277 CG G A V ++ S+E A+ N N + NV +++ +E Sbjct: 320 CGVGTIGQAFASKVKEVRGIDTIPESIEDAKRNAEKNGLENVYYEVGKAEDVFPKWMKE- 378 Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL 335 ++ + VDPPRSG D + + ++Y+SCNP +L RDL++L Sbjct: 379 -----------GFKPDAVIVDPPRSGCDQGLIQSLLQAEAKQLVYVSCNPSTLARDLALL 427 Query: 336 STTHTIERLALFDQFPYTRHMECGVLLVRKPS 367 + + + + D FP T H+E VLL K + Sbjct: 428 AKKYRVRYMQPVDMFPQTAHVETVVLLELKNN 459 >gi|312863381|ref|ZP_07723619.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus vestibularis F0396] gi|311100917|gb|EFQ59122.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus vestibularis F0396] Length = 453 Score = 278 bits (710), Expect = 2e-72, Method: Composition-based stats. Identities = 81/384 (21%), Positives = 152/384 (39%), Gaps = 40/384 (10%) Query: 7 IDQYEQQLAEKVDRLRQMMLAF-QVPNLQI----FRSEPIHYRMRAEFHIWHDGDDLYHI 61 YE+QL K ++ + + ++++ P YR +A+ + L Sbjct: 85 HMTYEEQLKFKRKQVVDNLYKTAGISDVEVAETLGMDTPYAYRNKAQVPVRRVKGQLETG 144 Query: 62 MFDQQTKERMRIDYFMPGSLLINALMI---EMMATIRLEP--------LLRAKLFQIDYL 110 + + + + + I+ F+ I+ L++ +++ L+P L+R + + + Sbjct: 145 FYRKNSHDLIPIEDFLIQDKEIDKLIVFVRDLLRRYDLKPYDEKEQTGLIRHLVVRRGHY 204 Query: 111 TSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD----Y 166 + Q VT R + + +A + IQ I N T ++ Y Sbjct: 205 SGQMMLVFVT---TRPKVFRIDQVIAMITEAFPSVVSIIQNINDKN-TNAIFGKEFRTLY 260 Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATK-GIQGDLLELYCGNGNFSL 225 + +T + Y SF Q N + + + + + +++ Y G G L Sbjct: 261 GQDTITDSMLGNDYEISAQSFYQVNTEMAEKLYQTAIDFSDLNSDSIVIDAYSGIGTIGL 320 Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285 A+ V VE+ + +VE A+ N N + N V S++ N + Sbjct: 321 SFAKQVKEVYGVEVIETAVEDAKKNAERNGITNAHYVADSAE------------NAMAKW 368 Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGM-VQAYP-HILYISCNPDSLCRDLSILST-THTIE 342 + I VDPPR GL ++ + V P I Y+SCNP ++ RD+ + ++ Sbjct: 369 SKDGIKPDIIIVDPPRKGLTESFIKASVAMQPEKITYVSCNPATMARDIKSYQELGYELK 428 Query: 343 RLALFDQFPYTRHMECGVLLVRKP 366 ++ D FP T H+EC VLL R Sbjct: 429 KVQPVDLFPQTHHVECVVLLQRSK 452 >gi|261367933|ref|ZP_05980816.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Subdoligranulum variabile DSM 15176] gi|282570747|gb|EFB76282.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Subdoligranulum variabile DSM 15176] Length = 381 Score = 277 bits (709), Expect = 2e-72, Method: Composition-based stats. Identities = 84/382 (21%), Positives = 143/382 (37%), Gaps = 34/382 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHI 61 LL Y +QLA+K RL+ ++ F +P HYR +A L Sbjct: 14 GCPLLATPYPEQLAQKQTRLQTLLGKFAPVEPVQGMEKPWHYRNKAIASFAMRQGKLVCG 73 Query: 62 MFDQQTKERMRIDYFMPGSLLINALMIEMMAT-------IRLEPLLRAKLFQIDYLTSQS 114 ++ + T + + +N + ++ E L + ++ Sbjct: 74 LYAEGTHTVLPGSDCLLQQEALNRTLEAVLQAARSCRWTAYDEDRGTGSLRHVVLRGTRK 133 Query: 115 DQAIVTLIYHRLLDDAWRECAIRLRDA-------LHARKYQIQLIGRANKTKICLDRDYV 167 + +VTL+ R LR +H N+ K+ V Sbjct: 134 GEVLVTLVTPGPALPGSRNFCAALRKEAPWVAGIVHNINPTATSAVLGNREKVLYGPGQV 193 Query: 168 DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNFSLV 226 + L L + SF Q N + + A + +++ YCG G L Sbjct: 194 LDTLC----GLRFAISSRSFYQVNPLQTEVLYRTAMKLADLSGKETVVDAYCGIGTIGLC 249 Query: 227 LARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDID 286 A +VL +E +V A N N V N + + E+ + R Sbjct: 250 AASSSGQVLGIERNPAAVRDAIANARRNGVRNARFTCADATEWMEQAAR----------- 298 Query: 287 IHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILS-TTHTIER 343 + +F+DPPR+G A +G V A ++Y+SC+P++L RD+++ S + +R Sbjct: 299 -QALHPDVVFLDPPRAGSTPACIGAVARMAPQRVVYVSCDPETLARDVALFSQKGYRAQR 357 Query: 344 LALFDQFPYTRHMECGVLLVRK 365 D FP+TRH+E VLL R+ Sbjct: 358 FVPVDLFPHTRHVETIVLLQRE 379 >gi|313623417|gb|EFR93632.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria innocua FSL J1-023] Length = 459 Score = 277 bits (709), Expect = 2e-72, Method: Composition-based stats. Identities = 81/391 (20%), Positives = 143/391 (36%), Gaps = 40/391 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54 L Y QL K D + Q + + I +P YR +++F Sbjct: 84 GCQLQHVAYSAQLELKRDIVIQSIEKHTKIDPTKLKIRPTIGMEDPWRYRNKSQFQTRMV 143 Query: 55 GDDLYH-IMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRA 102 G +F + + + I+ + L+ + + ++R Sbjct: 144 GSGQVETGLFGANSHQLVPIEDCIVQQPVTIKVTNFVRDLLEKYGVPIYDEKAGSGIVRT 203 Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162 + + T ++ +T + L RE + AL +Q + +A + I Sbjct: 204 IVVRTGVKTGETQLVFITN--SKKL-PKKREMLAEIEAALPEVTSIMQNVNQAKSSLIFG 260 Query: 163 DRDYV---DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYC 218 D ++ E + L + +F Q N + + V A + L++ YC Sbjct: 261 DETFLLAGKESIEEKLMELEFDLSARAFFQLNPFQTERLYQEVEKALVLTGSETLVDAYC 320 Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278 G G A V ++I S+E A+ N N + NV +++ E Sbjct: 321 GVGTIGQAFAGKVKEVRGMDIIPESIEDAKRNAEKNGIENVYYEVGKAEDVLPKWVNE-- 378 Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILS 336 +R + VDPPRSG D + + ++Y+SCNP +L RDL++L+ Sbjct: 379 ----------GFRPDAVIVDPPRSGCDQGLIKSLLQVEAKQLVYVSCNPSTLARDLALLA 428 Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVRKPS 367 + I + D FP T H+E VLL K + Sbjct: 429 KKYRIRYMQPVDMFPQTAHVETVVLLQLKDN 459 >gi|322385303|ref|ZP_08058948.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus cristatus ATCC 51100] gi|321270562|gb|EFX53477.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus cristatus ATCC 51100] Length = 453 Score = 277 bits (709), Expect = 2e-72, Method: Composition-based stats. Identities = 75/381 (19%), Positives = 156/381 (40%), Gaps = 40/381 (10%) Query: 10 YEQQLAEKVDRLRQMMLAF-QVPNLQI----FRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 Y QLA K +++ + + ++++ +P+ YR +A+ + L F Sbjct: 88 YPAQLAFKGKQVQDCLYKIAGISDVEVLETLGMDQPLAYRNKAQVPVRRVNGQLETGFFR 147 Query: 65 QQTKERMRIDYFMPGSLLINALMI---EMMATIRLEP--------LLRAKLFQIDYLTSQ 113 + + + + I+ F +I+ +++ +++ L+P L+R + + + + + Sbjct: 148 KNSHDLLPIEDFYIQDPIIDQVIVFVRDLLRRFALKPYDEKEGTGLIRNLVVRRGHNSGE 207 Query: 114 SDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDE 169 +VT + L + E ++ + Q + + +D++ + Sbjct: 208 IMVILVTNRSKIFRVEQLIERLTEAFPAIKSIMQNINDQPGNAIFGREFRTLYGQDFITD 267 Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLA 228 + ++ +F Q N + + + + D +L+ Y G G L LA Sbjct: 268 SMLGKQ----FQIAAPAFYQVNTEMAEKLYQTAFDFADFKKEDIVLDAYSGIGTIGLSLA 323 Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288 +V VE+ +VE ++ N N + + V +++ Q Sbjct: 324 DRVQQVYGVEVIPEAVENSQRNAELNGITSASYVCAPAEKAIQTWLN------------Q 371 Query: 289 SYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCRDLSIL-STTHTIERLA 345 + I VDPPR GL ++ + V P I+YISCNP ++ RD+ + + ++++ Sbjct: 372 GVKADVILVDPPRKGLTESFITSSVSMEPQRIVYISCNPATMARDIKLYQGQGYELKKVQ 431 Query: 346 LFDQFPYTRHMECGVLLVRKP 366 D FP T H+EC VLL RK Sbjct: 432 PVDLFPQTHHVECVVLLQRKK 452 >gi|254853619|ref|ZP_05242967.1| RNA methyltransferase [Listeria monocytogenes FSL R2-503] gi|258606994|gb|EEW19602.1| RNA methyltransferase [Listeria monocytogenes FSL R2-503] Length = 459 Score = 277 bits (709), Expect = 2e-72, Method: Composition-based stats. Identities = 81/390 (20%), Positives = 142/390 (36%), Gaps = 40/390 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54 L Y QL K D + Q + + I +P YR +++F Sbjct: 84 GCQLQHVAYSAQLELKRDIVIQSIEKHTKIDPTKLKIRPTIGMEDPWRYRNKSQFQTRMV 143 Query: 55 GDDLYH-IMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRA 102 G +F + + + I+ + L+ + + ++R Sbjct: 144 GSGQVETGLFGANSHQLVPIEDCIVQQPVTIKVTNFVRDLLEKYGVPIYDEKAGSGIVRT 203 Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162 + + T ++ +T + L RE + AL +Q + +A + I Sbjct: 204 IVVRTGVKTGETQLVFITN--SKKL-PKKREMLAEIEAALPEVTSIMQNVNQAKSSLIFG 260 Query: 163 DRDYV---DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYC 218 D ++ E + L + +F Q N + + V A + L++ YC Sbjct: 261 DETFLLAGKESIEEKLMGLEFDLSARAFFQLNPFQTERLYQEVEKALVLTGSETLVDAYC 320 Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278 G G A V ++I S+E A+ N N + NV +++ E Sbjct: 321 GVGTIGQAFAGKVKEVRGMDIIPESIEDAKRNAEKNGIENVYYEVGKAEDVLPKWVNE-- 378 Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILS 336 +R + VDPPRSG D + + ++Y+SCNP +L RDL++L+ Sbjct: 379 ----------GFRPDAVIVDPPRSGCDQGLIKSLLDVEAKQLVYVSCNPSTLARDLALLA 428 Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVRKP 366 + I + D FP T H+E VLL K Sbjct: 429 KKYRIRYMQPVDMFPQTAHVETVVLLQLKD 458 >gi|169830726|ref|YP_001716708.1| RNA methyltransferase [Candidatus Desulforudis audaxviator MP104C] gi|169637570|gb|ACA59076.1| RNA methyltransferase, TrmA family [Candidatus Desulforudis audaxviator MP104C] Length = 465 Score = 277 bits (709), Expect = 2e-72, Method: Composition-based stats. Identities = 89/403 (22%), Positives = 142/403 (35%), Gaps = 60/403 (14%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56 LL Y +QL K ++R + + +EP HYR +A FH+ D Sbjct: 85 GCHLLHIDYPEQLRWKTVQVRDALTRLGGLGEVPVANTLGMNEPRHYRNKAHFHVSRDSG 144 Query: 57 DLYHIMFDQQTKERMRIDYFMPG-----SLLINA---------------LMIEMMATIRL 96 L + + R+ F+ LL+ L + + Sbjct: 145 RLALGFLARGSH---RVTCFVDADGGSGCLLVQRDLLRVAARAAALLESLRVPLYDWETQ 201 Query: 97 EPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGR-- 154 LR L + T + +VT R RE A RL I+ + Sbjct: 202 RGYLRNLLLRRAAATGEIMLVLVT---GRQNWPGEREFAERLTAEEPGVVSVIRNVNALE 258 Query: 155 -----ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGI 209 + ++ + E L L +R SF Q N E + G+ Sbjct: 259 TRELLGPENRVRAGEPAITEHLG----GLKFRIGPASFFQVNPEQAEKTYE-IARLFAGL 313 Query: 210 QGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267 G +++ Y G G +L LA V+ E +V A+ N N + NV+ + + + Sbjct: 314 TGKETVVDAYSGIGTIALFLASRAKSVIGFEALPAAVADAQENALRNGIKNVRFEQGAVE 373 Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNP 325 + L + R +DPPR G A + + ++Y+SC P Sbjct: 374 DL------------LPEWAARGRRVDVAVLDPPRRGCGPAALEALGRLRPRRVVYVSCAP 421 Query: 326 DSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVRKPS 367 +L RDL L+ + ++ D FP T H+EC V L RK S Sbjct: 422 ATLARDLGRLAELGFDVVKVQPVDMFPQTSHIECVVSLTRKHS 464 >gi|55822353|ref|YP_140794.1| TrmA family tRNA methyltransferase [Streptococcus thermophilus CNRZ1066] gi|55738338|gb|AAV61979.1| tRNA methyltransferase, TrmA family [Streptococcus thermophilus CNRZ1066] Length = 454 Score = 277 bits (709), Expect = 2e-72, Method: Composition-based stats. Identities = 82/386 (21%), Positives = 146/386 (37%), Gaps = 38/386 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54 L+ +Y++QL K D L Q + F+ N + I +P HYR + +F I Sbjct: 81 GCQLMHLRYDKQLEFKTDLLGQALKKFKPANFESYEIRPTIGMKQPQHYRAKLQFQIRSF 140 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----------LRAKL 104 G + +F + + + ID + L A+M ++ + L +R + Sbjct: 141 GGSVKAGLFAEGSHRLINIDDCLVQDELTQAIMNKVTNLLDKYKLPIYNERKISGIRTVM 200 Query: 105 FQIDYLTSQSDQAIVTL--IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162 + ++Q VT + L + Y +T+I Sbjct: 201 IRRALGSNQVQLIFVTSNPVSLTKLVKELTLSYPEIVTVAVNYNYSKSSEIYGQETEIIW 260 Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNG 221 +D + E + L +F Q N + + A L++ YCG G Sbjct: 261 GQDTIQEEVLDYNFAL----SPRAFYQLNPKQTEVLYGQAVEALEVDKSEHLIDAYCGVG 316 Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281 L A+ + ++I ++E AR N + ++N +++ +E Sbjct: 317 TIGLAFAKKVSTIRGMDIIPEAIEDARKNAESLGLDNAHYEVGKAEDIIPRWYKE----- 371 Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTTH 339 YR + VDPPR+GLD + + Y ++Y+SCN +L RDL L+ + Sbjct: 372 -------GYRADALIVDPPRTGLDSKLLKTILKYTPKKMVYVSCNVSTLARDLVSLAKVY 424 Query: 340 TIERLALFDQFPYTRHMECGVLLVRK 365 + + D FP+T E V L +K Sbjct: 425 DVNYIQSVDMFPHTARTEAVVKLTKK 450 >gi|313632900|gb|EFR99843.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria seeligeri FSL N1-067] Length = 459 Score = 277 bits (709), Expect = 2e-72, Method: Composition-based stats. Identities = 80/392 (20%), Positives = 144/392 (36%), Gaps = 42/392 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54 L Y QL K D + Q + + Q I +P YR +++F Sbjct: 84 GCQLQHVAYSAQLELKRDIVIQSIEKHTKIDPQKLNIRATIGMEDPWRYRNKSQFQTRLV 143 Query: 55 GDDLYH-IMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRA 102 G +F + + + I+ + L+ + + ++R Sbjct: 144 GSGQVETGLFGVNSHQLVPIEDCIVQQPVTIKVTNFVRDLLEKYGVPIYDEKAGSGIVRT 203 Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162 + + T ++ +T + L RE + AL +Q + +A K+ I Sbjct: 204 LVVRTGIKTGETQLVFITN--SKKL-PKKREMLAEIEAALPEVTSIMQNVNQA-KSSIIF 259 Query: 163 DRD----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELY 217 + E + L + +F Q N + + V A + L++ Y Sbjct: 260 GEETFLLAGKESIHEKLMELEFDLSARAFFQLNPFQTERLYQEVEKALVLTGSETLVDAY 319 Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277 CG G A V ++ S+E A+ N N + NV +++ +E Sbjct: 320 CGVGTIGQAFASKVKEVRGMDTIPESIEDAKRNAEKNGLENVYYEVGKAEDVFPKWMKE- 378 Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL 335 ++ + VDPPRSG D +G + ++Y+SCNP +L RDL++L Sbjct: 379 -----------GFKPDAVIVDPPRSGCDQGLIGSLLQAEAKQLVYVSCNPSTLARDLALL 427 Query: 336 STTHTIERLALFDQFPYTRHMECGVLLVRKPS 367 + + + + D FP T H+E VLL K + Sbjct: 428 AKKYRVRYMQPVDMFPQTAHVETVVLLELKNN 459 >gi|153855592|ref|ZP_01996708.1| hypothetical protein DORLON_02726 [Dorea longicatena DSM 13814] gi|149752013|gb|EDM61944.1| hypothetical protein DORLON_02726 [Dorea longicatena DSM 13814] Length = 363 Score = 277 bits (709), Expect = 2e-72, Method: Composition-based stats. Identities = 78/381 (20%), Positives = 147/381 (38%), Gaps = 42/381 (11%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDL-YHIMFDQQT 67 Y++QL K + Q++ F + I P YR + D ++ + T Sbjct: 2 PYKEQLKRKQKQEEQLLGGFCKVSPIIGMEHPYFYRNKVHAVFDRDKKGNVISGIYAEGT 61 Query: 68 KERMRIDYFMPGS-----------LLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116 + ++ + L+ + I+ LLR L + + ++ + Sbjct: 62 HRVIAVEECLIEDKKSQEIIRTIRELLPSFKIKTYNEDTGYGLLRHVLVRRGF---ETGE 118 Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGR-------ANKTKICLDRDYVDE 169 +V L+ + + LR + + K K ++ + Sbjct: 119 IMVVLVLGSPILPSKNNFVKALRKVHPEITTVVLNVNNKQTSMVLGEKEKPIYGPGFIKD 178 Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNFSLVLA 228 +L +R SF Q N + + A + +++ YCG G L+ A Sbjct: 179 KLC----GCTFRISPKSFYQVNPVQTEVLYNTAMDYAELTGKETVIDAYCGTGTIGLIAA 234 Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288 ++ +V+ VE+ K +V+ AR N N + N +I + F M + + Sbjct: 235 KNAKKVIGVELNKDAVKDARINAKENGITNAEIYAGDAGRFMVDMASKNQ---------- 284 Query: 289 SYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST-THTIERLA 345 + +F+DPPR+G D+ + V ++Y+SCNP++L RDL L+ + ++ Sbjct: 285 --KADVVFMDPPRAGSDEKFLSSVIKLGPKRVVYVSCNPETLARDLKYLTRHGYQAVKIQ 342 Query: 346 LFDQFPYTRHMECGVLLVRKP 366 D FP+ H+E V LVRK Sbjct: 343 PVDNFPFCDHIETVVKLVRKK 363 >gi|25010521|ref|NP_734916.1| hypothetical protein gbs0448 [Streptococcus agalactiae NEM316] gi|50401579|sp|Q8E6W1|Y448_STRA3 RecName: Full=Uncharacterized RNA methyltransferase gbs0448 gi|23094874|emb|CAD46092.1| Unknown [Streptococcus agalactiae NEM316] Length = 451 Score = 277 bits (709), Expect = 2e-72, Method: Composition-based stats. Identities = 86/388 (22%), Positives = 154/388 (39%), Gaps = 42/388 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54 ++ QY++QL K D +RQ ++ F+ + I SEP HYR + +F + Sbjct: 81 GCQIMHLQYDKQLEFKTDVIRQALMKFKPEGYENYEIRKTIGMSEPEHYRAKLQFQVRSF 140 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMI---EMMATIRLEPLLRAKLFQIDYLT 111 G ++ ++ Q T + I + L ++ E++ +L K+ + + Sbjct: 141 GGNVRAGLYAQGTHRLIDIKDCLVQDSLTQEMINRVAELLGKYKLPIYNERKIAGVRTVM 200 Query: 112 SQ----SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANK-------TKI 160 + S + + I + LD + + I L K I + T++ Sbjct: 201 IRRAQASGEVQLIFITSKRLD--FDDVVIELVREFPELKTVAVNINASKTSDIYGQITEV 258 Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCG 219 ++ ++E + G +L +F Q N + E V A DL++ YCG Sbjct: 259 IWGQESINEEVLDYGFSL----SPRAFYQLNPKQTQILYSEAVKALDVKEDDDLIDAYCG 314 Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279 G L A V ++I +++ A+ N N +++ E Sbjct: 315 VGTIGLAFAGKVKSVRGMDIIPEAIQDAKENALHMGFTNTHYEAGKAEDVIPRWYSE--- 371 Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILST 337 +R + VDPPR+GLDD + + P ++Y+SCN +L RDL L+ Sbjct: 372 ---------GFRANALIVDPPRTGLDDKLLNTILKMPPEKMVYVSCNTSTLARDLVTLTK 422 Query: 338 THTIERLALFDQFPYTRHMECGVLLVRK 365 + + + D FP+T E V L RK Sbjct: 423 VYHVHYIQSVDMFPHTARTEAVVKLQRK 450 >gi|139473609|ref|YP_001128325.1| RNA methyltransferase [Streptococcus pyogenes str. Manfredo] gi|134271856|emb|CAM30091.1| putative RNA methyltransferase [Streptococcus pyogenes str. Manfredo] Length = 462 Score = 277 bits (709), Expect = 2e-72, Method: Composition-based stats. Identities = 80/380 (21%), Positives = 148/380 (38%), Gaps = 40/380 (10%) Query: 10 YEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 YE QL K +++ + I +EP+ YR +A+ + L F Sbjct: 99 YEDQLTFKKKQVQDSLYKIAGISDVTVESTIGMTEPLAYRNKAQVPVRRVNGQLETGFFR 158 Query: 65 QQTKERMRIDYFMPGSLLINAL-----------MIEMMATIRLEPLLRAKLFQIDYLTSQ 113 + + + + I + I+ L I+ LLR + + + + Sbjct: 159 KHSHDLIPISDYYIQDKEIDRLINFTRDLLRRFDIKPYDETEQTGLLRNIVVRRGHYSG- 217 Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD----YVDE 169 + ++ L+ R + ++ +A A IQ I N T +D Y + Sbjct: 218 --EMMLVLVTTRPKVFRVDQVIEKIVEAFPAVVSIIQNINDKN-TNAIFGKDFKTLYGKD 274 Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLA 228 +T + Y SF Q N + + + +A + + D +++ Y G G L A Sbjct: 275 TITDSMLGNNYAISAQSFYQVNTVMAEKLYQTAIAFSDLSKDDIVIDAYSGIGTIGLSFA 334 Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288 + V VE+ + +V A+ N A N + N V +++ ++ Sbjct: 335 KTVKAVYGVEVIEAAVRDAQQNAALNGITNAYFVADTAEHAMATWAKD------------ 382 Query: 289 SYRFKTIFVDPPRSGLDDATVGM--VQAYPHILYISCNPDSLCRDLSILST-THTIERLA 345 + I VDPPR GL ++ + I Y+SCNP ++ RD+ + + ++ Sbjct: 383 GIKPSVILVDPPRKGLTESFIQASVAMGPQKITYVSCNPATMARDIKRYQELGYKLTKVQ 442 Query: 346 LFDQFPYTRHMECGVLLVRK 365 D FP T H+EC VLL+++ Sbjct: 443 PVDLFPQTHHVECVVLLIKE 462 >gi|324993953|gb|EGC25872.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis SK405] gi|327463215|gb|EGF09536.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis SK1] gi|327489947|gb|EGF21736.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis SK1058] Length = 465 Score = 277 bits (709), Expect = 2e-72, Method: Composition-based stats. Identities = 78/385 (20%), Positives = 162/385 (42%), Gaps = 40/385 (10%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAF-QVPNLQI----FRSEPIHYRMRAEFHIWHDGDDLY 59 L Y QL K +++ + + ++++ +P+ YR +A+ + L Sbjct: 96 LGHLNYSAQLDFKRKQVKDSLYKIAGLSDVEVLPTLGMEQPLGYRNKAQVPVRRVNGQLE 155 Query: 60 HIMFDQQTKERMRIDYFMPGSLLINALMI---EMMATIRLEP--------LLRAKLFQID 108 F + + + + I+ F +I+ +++ +++ L+P L+R + + Sbjct: 156 TGFFRKNSHDLLPIEDFYIQDPVIDQVILFTRDLLRRFDLKPYDEQEKTGLIRNLVVRRG 215 Query: 109 YLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR 164 + + + +VT + L + E ++ + Q + + Sbjct: 216 HYSGEIMVILVTTRPKIFRVEQLMECLTEAFPAIKSIMQNINDQPGNAIFGKDWRTLYGQ 275 Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNF 223 +Y+ +++ ++ +F Q N + + + + ++ D+ L+ Y G G Sbjct: 276 NYITDQMLGND----FQIAAPAFYQVNTEMAEKLYQTAIDFSELTADDVVLDAYSGIGTI 331 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 L +A+H +V VE+ +VE +R N A N + N V S++E Q +E Sbjct: 332 GLSVAKHVKQVYGVEVIPEAVENSRKNAAINGITNASYVCASAEEAIQNWLKE------- 384 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGM-VQAYP-HILYISCNPDSLCRDLSILST-THT 340 + I VDPPR GL ++ + V P I YISCN ++ RD+ + + Sbjct: 385 -----GIQADVILVDPPRKGLTESFIKASVSMEPKKITYISCNVATMARDIKLYQELGYE 439 Query: 341 IERLALFDQFPYTRHMECGVLLVRK 365 ++++ D FP T H+EC LLV++ Sbjct: 440 LKKVQPVDLFPQTHHVECVSLLVKR 464 >gi|19746322|ref|NP_607458.1| RNA methyltransferase [Streptococcus pyogenes MGAS8232] gi|50401606|sp|Q8P0H4|Y1360_STRP8 RecName: Full=Uncharacterized RNA methyltransferase spyM18_1360 gi|19748514|gb|AAL97957.1| putative RNA methyltransferase [Streptococcus pyogenes MGAS8232] Length = 462 Score = 277 bits (709), Expect = 2e-72, Method: Composition-based stats. Identities = 81/380 (21%), Positives = 148/380 (38%), Gaps = 40/380 (10%) Query: 10 YEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 YE QL K +++ + I +EP+ YR +A+ + L F Sbjct: 99 YEDQLTFKKKQVQDSLYKIAGISDVTVESTIGMTEPLAYRNKAQVPVRRVNGQLETGFFR 158 Query: 65 QQTKERMRIDYFMPGSLLINAL-----------MIEMMATIRLEPLLRAKLFQIDYLTSQ 113 + + + + I + I+ L I+ LLR + + + + Sbjct: 159 KHSHDLIPISDYYIQDKEIDRLINFTRDLLRRFDIKPYDETEQTGLLRNIVVRRGHYSG- 217 Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD----YVDE 169 + +V L+ R + ++ +A A IQ I N T +D Y + Sbjct: 218 --EMMVVLVTTRPKVFRVDQVIEKIVEAFPAVVSIIQNINDEN-TNAIFGKDFKTLYGKD 274 Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLA 228 +T + Y SF Q N + + + +A + + D +++ Y G G L A Sbjct: 275 TITDSMLGNNYAISAQSFYQVNTVMAEKLYQTAIAFSDLSKDDIVIDAYSGIGTIGLSFA 334 Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288 + V VE+ + +V A+ N A N + N V +++ ++ Sbjct: 335 KTVKAVYGVEVIEAAVRDAQQNAALNGITNAYFVADTAEHAMATWAKD------------ 382 Query: 289 SYRFKTIFVDPPRSGLDDATVGM--VQAYPHILYISCNPDSLCRDLSILST-THTIERLA 345 + I VDPPR GL ++ + I Y+SCNP ++ RD+ + + ++ Sbjct: 383 GIKPSVILVDPPRKGLTESFIQASVAMGPQKITYVSCNPATMARDIKRYQELGYKLAKVQ 442 Query: 346 LFDQFPYTRHMECGVLLVRK 365 D FP T H+EC VLL+++ Sbjct: 443 PVDLFPQTHHVECVVLLIKE 462 >gi|77407679|ref|ZP_00784434.1| RNA methyltransferase, TrmA family [Streptococcus agalactiae COH1] gi|77173678|gb|EAO76792.1| RNA methyltransferase, TrmA family [Streptococcus agalactiae COH1] Length = 451 Score = 277 bits (709), Expect = 2e-72, Method: Composition-based stats. Identities = 86/388 (22%), Positives = 154/388 (39%), Gaps = 42/388 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54 ++ QY++QL K D +RQ ++ F+ + I SEP HYR + +F + Sbjct: 81 GCQIMHLQYDKQLEFKTDIIRQALMKFKPEGYENYEIRKTIGMSEPEHYRAKLQFQVRSF 140 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMI---EMMATIRLEPLLRAKLFQIDYLT 111 G ++ ++ Q T + I + L ++ E++ +L K+ + + Sbjct: 141 GGNVKAGLYAQGTHRLIDIKDCLVQDRLTQEMINRVAELLGKYKLPIYNERKIAGVRTVM 200 Query: 112 SQ----SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANK-------TKI 160 + S + + I + LD + + I L K I + T++ Sbjct: 201 IRRAQASGEVQLIFITSKRLD--FDDVVIELVREFPELKTVAVNINASKTSDIYGQITEV 258 Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCG 219 ++ ++E + G +L +F Q N + E V A DL++ YCG Sbjct: 259 IWGQESINEEVLDYGFSL----SPRAFYQLNPKQTQILYSEAVKALDVKEDDDLIDAYCG 314 Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279 G L A V ++I +++ A+ N N +++ E Sbjct: 315 VGTIGLAFAGKVKSVRGMDIIPEAIQDAKENALHMGFTNTHYEAGKAEDIIPRWYSE--- 371 Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILST 337 +R + VDPPR+GLDD + + P ++Y+SCN +L RDL L+ Sbjct: 372 ---------GFRANALIVDPPRTGLDDKLLNTILKMPPEKMVYVSCNTSTLARDLVTLTK 422 Query: 338 THTIERLALFDQFPYTRHMECGVLLVRK 365 + + + D FP+T E V L RK Sbjct: 423 VYHVHYIQSVDMFPHTARTEAVVKLQRK 450 >gi|116627288|ref|YP_819907.1| tRNA methyltransferase, TrmA family [Streptococcus thermophilus LMD-9] gi|116100565|gb|ABJ65711.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus thermophilus LMD-9] Length = 439 Score = 277 bits (709), Expect = 2e-72, Method: Composition-based stats. Identities = 82/386 (21%), Positives = 146/386 (37%), Gaps = 38/386 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54 L+ +Y++QL K D L Q + F+ N + I +P HYR + +F I Sbjct: 66 GCQLMHLRYDKQLEFKTDLLGQALKKFKPANFESYEIRPTIGMKQPQHYRAKLQFQIRSF 125 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----------LRAKL 104 G + +F + + + ID + L A+M ++ + L +R + Sbjct: 126 GGSVKAGLFAEGSHRLINIDDCLVQDELTQAIMNKVTNLLDKYKLPIYNERKISGIRTVM 185 Query: 105 FQIDYLTSQSDQAIVTL--IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162 + ++Q VT + L + Y +T+I Sbjct: 186 IRRALGSNQVQLIFVTSNPVSLTKLVKELTLSYPEIVTVAVNYNYSKSSEIYGQETEIIW 245 Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNG 221 +D + E + L +F Q N + + A L++ YCG G Sbjct: 246 GQDTIQEEVLDYNFAL----SPRAFYQLNPKQTEVLYGQAVEALEVDKSEHLIDAYCGVG 301 Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281 L A+ + ++I ++E AR N + ++N +++ +E Sbjct: 302 TIGLAFAKKVSTIRGMDIIPEAIEDARKNAESLGLDNAHYEVGKAEDIIPRWYKE----- 356 Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTTH 339 YR + VDPPR+GLD + + Y ++Y+SCN +L RDL L+ + Sbjct: 357 -------GYRADALIVDPPRTGLDSKLLKTILEYTPKKMVYVSCNVSTLARDLVSLAKVY 409 Query: 340 TIERLALFDQFPYTRHMECGVLLVRK 365 + + D FP+T E V L +K Sbjct: 410 DVNYIQSVDMFPHTARTEAVVKLTKK 435 >gi|289435036|ref|YP_003464908.1| RNA methyltransferase [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289171280|emb|CBH27822.1| RNA methyltransferase [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 459 Score = 277 bits (709), Expect = 2e-72, Method: Composition-based stats. Identities = 81/392 (20%), Positives = 144/392 (36%), Gaps = 42/392 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54 L Y QL K D + Q + + Q I +P YR +++F Sbjct: 84 GCQLQHVAYSAQLELKRDIVIQSIEKHTKIDPQKLNIRATIGMEDPWRYRNKSQFQTRLV 143 Query: 55 GDDLYH-IMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRA 102 G +F + + + I+ + L+ + + ++R Sbjct: 144 GSGQVETGLFGVNSHQLVPIEDCIVQQPVTIKVTNFVRDLLEKYGVPIYDEKAGSGIVRT 203 Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162 + + T ++ +T + L RE + AL +Q + +A K+ I Sbjct: 204 LVVRTGVKTGETQLVFITN--SKKL-PKKREMLAEIEAALPEVTSIMQNVNQA-KSSIIF 259 Query: 163 DRD----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELY 217 + E + L + +F Q N + + V A + L++ Y Sbjct: 260 GEETFLLAGKESIHEKLMELEFDLSARAFFQLNPFQTERLYQEVEKALVLTGSETLVDAY 319 Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277 CG G A V ++ S+E A+ N N + NV ++E +E Sbjct: 320 CGVGTIGQAFASKVKEVRGMDTIPESIEDAKRNAEKNGLENVYYEVGKAEEVFPKWMKE- 378 Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL 335 ++ + VDPPRSG D +G + ++Y+SCNP +L RDL++L Sbjct: 379 -----------GFKPDAVIVDPPRSGCDQGLIGSLLQAEAKQLVYVSCNPSTLARDLALL 427 Query: 336 STTHTIERLALFDQFPYTRHMECGVLLVRKPS 367 + + + + D FP T H+E VLL K + Sbjct: 428 AKKYRVRYMQPVDMFPQTAHVETVVLLELKNN 459 >gi|220931148|ref|YP_002508056.1| RNA methyltransferase, TrmA family [Halothermothrix orenii H 168] gi|219992458|gb|ACL69061.1| RNA methyltransferase, TrmA family [Halothermothrix orenii H 168] Length = 453 Score = 277 bits (709), Expect = 2e-72, Method: Composition-based stats. Identities = 87/386 (22%), Positives = 146/386 (37%), Gaps = 39/386 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDG- 55 L Y QL K ++ + N I P YR +A+F + D Sbjct: 80 GCHLQQMDYSLQLLHKQKIVKDTLERIGGFEEVRVNEVIGADHPWIYRNKAQFPLGSDNE 139 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIE-----------MMATIRLEPLLRAKL 104 + + + T + + + LIN + + + LLR + Sbjct: 140 GRVITGFYQKGTHQVVPHRQCVIQHPLINRIARKTISILNNYDLTVYDEKTHTGLLRHLV 199 Query: 105 FQIDYLTSQSDQAIVTLIYH-RLLDDAWRECAIR---LRDALHARKYQIQLIGRANKTKI 160 ++ T+Q+ VT + L + R+ L+ L + + +KT + Sbjct: 200 VRVGICTNQALLIFVTRDKKFKELQEIARKLMTEIPELKGVLQNINPRRTNVIMGDKTLL 259 Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCG 219 DY + + ++ Y +SF Q N + V A Q +++ YCG Sbjct: 260 IKGNDYYIDYIG----SIRYAISPHSFFQVNTLQTERLYNTVRKYAGLSGQETVVDAYCG 315 Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279 G+ + LA V +E+ ++E A N A N +NN ++ ++ + Sbjct: 316 AGSIGIYLAGEARTVYGIEVVGSAIEDAERNAALNGINNCIFIKGKVEDKLPEL------ 369 Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST 337 +D + I DPPR GLD T+ V P I+Y+SCNP +L RDL + Sbjct: 370 -----VDKKKIKPDVIIFDPPRKGLDKETMATVLEVLPPKIVYVSCNPATLARDLKEIKA 424 Query: 338 THTIERLALFDQFPYTRHMECGVLLV 363 + I + D FP T H+EC V L Sbjct: 425 CYDINEVQPVDLFPQTYHVECVVKLE 450 >gi|313608342|gb|EFR84315.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria monocytogenes FSL F2-208] Length = 459 Score = 277 bits (709), Expect = 2e-72, Method: Composition-based stats. Identities = 81/390 (20%), Positives = 143/390 (36%), Gaps = 40/390 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL-------QIFRSEPIHYRMRAEFHIWHD 54 L Y QL K D + Q + + I +P YR +++F Sbjct: 84 GCQLQHVAYSAQLELKRDIVIQSIEKHTKIDPAKLKIRPTIGMEDPWRYRNKSQFQTRMV 143 Query: 55 GDDLYH-IMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRA 102 G +F + + + I+ + L+ + + ++R Sbjct: 144 GSGQVETGLFGANSHQLVPIEDCIVQQPVTIKVTNFVRDLLEKYGVPIYDEKAGSGIVRT 203 Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162 + + T ++ +T + L RE + AL +Q + +A + I Sbjct: 204 IVVRTGVKTGETQLVFITN--SKKL-PKKREILAEIEAALPEVTSIMQNVNQAKSSLIFG 260 Query: 163 DRDYV---DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYC 218 D ++ E + L + +F Q N + + V A + L++ YC Sbjct: 261 DETFLLAGKESIEEKLMELEFDLSARAFFQLNPFQTERLYQEVEKALVLTGSETLVDAYC 320 Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278 G G A V ++I S+E A+ N N + NV +++ +E Sbjct: 321 GVGTIGQAFAGKVKEVRGMDIIPESIEDAKRNAEKNGIENVYYEVGKAEDVLPKWVKE-- 378 Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILS 336 +R + VDPPRSG D + + ++Y+SCNP +L RDL++L+ Sbjct: 379 ----------GFRPDAVIVDPPRSGCDQGLIKSLLEVEAKQLVYVSCNPSTLARDLALLA 428 Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVRKP 366 + I + D FP T H+E VLL K Sbjct: 429 KKYRIRYMQPVDMFPQTAHVETVVLLQLKD 458 >gi|56807774|ref|ZP_00365630.1| COG2265: SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Streptococcus pyogenes M49 591] gi|209559589|ref|YP_002286061.1| Putative RNA methyltransferase [Streptococcus pyogenes NZ131] gi|209540790|gb|ACI61366.1| Putative RNA methyltransferase [Streptococcus pyogenes NZ131] Length = 452 Score = 277 bits (709), Expect = 2e-72, Method: Composition-based stats. Identities = 78/380 (20%), Positives = 146/380 (38%), Gaps = 40/380 (10%) Query: 10 YEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 YE QL K +++ + I +EP+ YR +A+ + L F Sbjct: 88 YEDQLTFKKKQVQDSLYKIAGISDVTVESTIGMTEPLAYRNKAQVPVRRVNGQLETGFFR 147 Query: 65 QQTKERMRIDYFMPGSLLINAL-----------MIEMMATIRLEPLLRAKLFQIDYLTSQ 113 + + + + I + I+ L I+ LLR + + + + Sbjct: 148 KHSHDLIPISDYYIQDKEIDRLINFTRDLLRRFDIKPYDETEQTGLLRNIVVRRGHYSG- 206 Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD----YVDE 169 + ++ L+ R + ++ +A A IQ I N T +D Y + Sbjct: 207 --EMMLVLVTTRPKVFRVDQVIEKIVEAFPAVVSIIQNINDKN-TNAIFGKDFKTLYGKD 263 Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLA 228 +T + Y SF Q N + + + +A + + D +++ Y G G L A Sbjct: 264 TITDSMLGNNYAISAQSFYQVNTIMAEKLYQTAIAFSDLSKDDIVIDAYSGIGTIGLSFA 323 Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288 + V VE+ + +V A+ N A N + N + +++ ++ Sbjct: 324 KTVKAVYGVEVIEAAVRDAQQNAALNGITNAYFIADTAEHAMATWAKD------------ 371 Query: 289 SYRFKTIFVDPPRSGLDDATVGM--VQAYPHILYISCNPDSLCRDLSILST-THTIERLA 345 + I VDPPR GL ++ + I Y+SCNP ++ RD+ + + ++ Sbjct: 372 GIKPSVILVDPPRKGLTESFIQASVAMGPQKITYVSCNPATMARDIKRYQELGYKLTKVQ 431 Query: 346 LFDQFPYTRHMECGVLLVRK 365 D FP T H+EC LL ++ Sbjct: 432 PVDLFPQTHHVECVSLLEKR 451 >gi|229543018|ref|ZP_04432078.1| RNA methyltransferase, TrmA family [Bacillus coagulans 36D1] gi|229327438|gb|EEN93113.1| RNA methyltransferase, TrmA family [Bacillus coagulans 36D1] Length = 459 Score = 277 bits (709), Expect = 2e-72, Method: Composition-based stats. Identities = 83/388 (21%), Positives = 147/388 (37%), Gaps = 41/388 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN-------LQIFRSEPIHYRMRAEFHIWHD 54 L Y+QQL EK D + Q + I P YR +++F + D Sbjct: 85 GCQLQHLVYKQQLIEKRDIVIQALERHTKLKVDELDIRPTIGMDNPWLYRNKSQFQLGED 144 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPG-----------SLLINALMIEMMATIRLEPLLRAK 103 + ++ + + + + + ++N + + + ++R Sbjct: 145 HGKIISGLYSLDSHRLINVPECIVQHPLTNKVTQVVTQILNDFHVPVYNEKTGKGIVRTI 204 Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD 163 + ++ Q+ QA V LI + ++ L Q + A KT + Sbjct: 205 VTRVGI---QTGQAQVVLITTKRELPRKDVILSEIKKRLPEVVSVAQNVN-AKKTSVIFG 260 Query: 164 RDYVD----ERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELYC 218 + + E + Y +F Q N V + V AA + + + YC Sbjct: 261 DETIHLSGKEIIEERLEEFTYELSARAFFQLNPIQTVKLYNEVKKAAALTGKEKIADTYC 320 Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278 G G L LA + +++ ++E A+ N AA+++ N ++ E Sbjct: 321 GVGTIGLWLADGASEIRGMDVIPEAIEDAKKNAAAHNIPNAHYFAGKAEVLLPKWLNE-- 378 Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILS 336 +R + VDPPRSG D+A + + +Y+SCNP +L +DL ILS Sbjct: 379 ----------GWRPDVVIVDPPRSGCDEALLRTILKVKPKKFVYVSCNPSTLAKDLHILS 428 Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVR 364 + I + D FP T H+EC VL+ R Sbjct: 429 KAYNIAYMQPVDMFPQTVHVECVVLMSR 456 >gi|319654160|ref|ZP_08008249.1| hypothetical protein HMPREF1013_04869 [Bacillus sp. 2_A_57_CT2] gi|317394094|gb|EFV74843.1| hypothetical protein HMPREF1013_04869 [Bacillus sp. 2_A_57_CT2] Length = 460 Score = 277 bits (709), Expect = 2e-72, Method: Composition-based stats. Identities = 81/391 (20%), Positives = 153/391 (39%), Gaps = 49/391 (12%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54 L +Y+QQL EK D + Q + N + I +P YR +++F + Sbjct: 87 GCQLQHLRYDQQLKEKRDIIIQALERHTKLNPEKLDIKETIGMEDPWSYRNKSQFQVGQK 146 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAK 103 + ++ + + I++ ++ L I + + ++R Sbjct: 147 DGKVLAGLYGMNSHRLINIEHCAVQHPQTTKVTEAVKRILQDLRIPIYNERSRKGIVRTI 206 Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD 163 + ++ Q+ + + LI + +++ L K IQ + KT + Sbjct: 207 VARVGI---QTGELQIVLITTQKELPKKEIIIEKIKSELPEVKSIIQNVN-GEKTSLIFG 262 Query: 164 R--------DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWV-LAATKGIQGDLL 214 + D++ E L L + +F Q N V + V AA + + Sbjct: 263 QETMNLDGSDFIQETLG----DLQFELSARTFFQLNPEQTVKLYNEVKRAAALTGKEKVA 318 Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274 + YCG G L +A + ++I + S+E A+ N + + + + V ++E Sbjct: 319 DAYCGVGTIGLWVADQAAEIRGMDIIRESIEDAKKNADRHGIKHAQYVVGKAEE------ 372 Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDL 332 L +R I VDPPR+GLD + + ++Y+SCNP +L +D+ Sbjct: 373 ------WLPKWTKDGWRPDVIIVDPPRTGLDHQLLKTILKVQPKKVVYVSCNPSTLAKDI 426 Query: 333 SILSTTHTIERLALFDQFPYTRHMECGVLLV 363 S+LS + + + D FP T H+E LV Sbjct: 427 SVLSPKYKVIGIQPVDMFPQTAHVESVTQLV 457 >gi|324994724|gb|EGC26637.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis SK678] Length = 464 Score = 277 bits (708), Expect = 2e-72, Method: Composition-based stats. Identities = 78/384 (20%), Positives = 161/384 (41%), Gaps = 40/384 (10%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAF-QVPNLQI----FRSEPIHYRMRAEFHIWHDGDDLY 59 L Y QL K +++ + + ++++ +P+ YR +A+ + L Sbjct: 96 LGHLNYSAQLDFKRKQVKDSLYKIAGLSDVEVLPTLGMEQPLGYRNKAQVPVRRVNGQLE 155 Query: 60 HIMFDQQTKERMRIDYFMPGSLLINALMI---EMMATIRLEP--------LLRAKLFQID 108 F + + + + I+ F +I+ +++ +++ L+P L+R + + Sbjct: 156 TGFFRKNSHDLLPIEDFYIQDPVIDQVILFTRDLLRRFDLKPYDEQEKTGLIRNLVVRRG 215 Query: 109 YLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR 164 + + + +VT + L + E ++ + Q + + Sbjct: 216 HYSGEIMVILVTTRPKIFRVEQLMECLTEAFPAIKSIMQNINDQPGNAIFGKDWRTLYGQ 275 Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNF 223 +Y+ +++ ++ +F Q N + + + + ++ D+ L+ Y G G Sbjct: 276 NYITDQMLGND----FQIAAPAFYQVNTEMAEKLYQTAIDFSELTADDVVLDAYSGIGTI 331 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 L +A+H +V VE+ +VE +R N A N + N V S++E Q +E Sbjct: 332 GLSVAKHVKQVYGVEVIPEAVENSRKNAAINGITNASYVCASAEEAIQNWLKE------- 384 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGM-VQAYP-HILYISCNPDSLCRDLSILST-THT 340 + I VDPPR GL ++ + V P I YISCN ++ RD+ + + Sbjct: 385 -----GIQADVILVDPPRKGLTESFIKASVSMEPKKITYISCNVATMARDIKLYQELGYE 439 Query: 341 IERLALFDQFPYTRHMECGVLLVR 364 ++++ D FP T H+EC LLV+ Sbjct: 440 LKKVQPVDLFPQTHHVECVALLVK 463 >gi|300764680|ref|ZP_07074671.1| SAM-dependent methyltransferase [Listeria monocytogenes FSL N1-017] gi|300514566|gb|EFK41622.1| SAM-dependent methyltransferase [Listeria monocytogenes FSL N1-017] Length = 459 Score = 277 bits (708), Expect = 2e-72, Method: Composition-based stats. Identities = 81/388 (20%), Positives = 142/388 (36%), Gaps = 40/388 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54 L Y QL K D + Q + + I +P YR +++F Sbjct: 84 GCQLQHVAYSAQLELKRDIVIQSIEKHTKIDPTKLKIRPTIGMEDPWRYRNKSQFQTRMV 143 Query: 55 GDDLYH-IMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRA 102 G +F + + + I+ + L+ + + ++R Sbjct: 144 GSGQVETGLFGANSHQLVPIEDCIVQQPVTIKVTNFVRDLLEKYGVPIYDEKAGSGIVRT 203 Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162 + + T ++ +T + L RE + AL +Q + +A + I Sbjct: 204 IVVRTGVKTGETQLVFITN--SKKL-PKKREMLAEIEAALPEVTSIMQNVNQAKSSLIFG 260 Query: 163 DRDYV---DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYC 218 D ++ E + L + +F Q N + + V A + L++ YC Sbjct: 261 DETFLLAGKESIEEKLMGLEFDLSARAFFQLNPFQTERLYQEVEKALVLTGSETLVDAYC 320 Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278 G G A V ++I S+E A+ N N + NV +++ E Sbjct: 321 GVGTIGQAFAGKVKEVRGMDIIPESIEDAKRNAEKNGIENVYYEVGKAEDVLPKWVNE-- 378 Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILS 336 +R + VDPPRSG D + + ++Y+SCNP +L RDL++L+ Sbjct: 379 ----------GFRPDAVIVDPPRSGCDQGLIKSLLDVEAKQLVYVSCNPSTLARDLALLA 428 Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVR 364 + I + D FP T H+EC LL R Sbjct: 429 KKYRIRYMQPVDMFPQTAHIECVGLLTR 456 >gi|57867361|ref|YP_189004.1| RNA methyltransferase [Staphylococcus epidermidis RP62A] gi|81674004|sp|Q5HN37|Y1435_STAEQ RecName: Full=Uncharacterized RNA methyltransferase SERP1435 gi|57638019|gb|AAW54807.1| RNA methyltransferase, TrmA family [Staphylococcus epidermidis RP62A] Length = 456 Score = 277 bits (708), Expect = 2e-72, Method: Composition-based stats. Identities = 72/389 (18%), Positives = 138/389 (35%), Gaps = 40/389 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFHIWHDGD 56 L Y QL K +++ + I P YR +++ + Sbjct: 82 GCQLQHMTYRAQLDMKREQVVNLFHRKGPFENTVIKETIGMVNPWRYRNKSQIPVGQSNS 141 Query: 57 DL-YHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKL 104 + + Q++ + + +D + +N L I + L+R + Sbjct: 142 NQVIMGFYRQRSHDIIDMDSCLIQDRQHQEVMNRVKYWLNELNISIYNEKTKTGLIRHLV 201 Query: 105 FQIDYLTSQSDQAIVTL----IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKI 160 + Y T + VT LL + ++ + + ++ Sbjct: 202 VRTGYHTDEMMVIFVTNGATFKQSELLVNKLKKEFPNITSIKQNINNSHSNVIMGRQSMT 261 Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCG 219 +D ++++L+ + Y + SF Q N+ + + L + + +L+ YCG Sbjct: 262 LYGKDKIEDQLS----EVTYHISDLSFYQINSSQTEKLYQQALNYAQLTGKEIVLDTYCG 317 Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279 G L +A V VE+ +++ A N N + N +++ + Sbjct: 318 IGTIGLYMAPLAKHVYGVEVVPQAIKDAEDNATKNQLKNTTFECGKAEDVILTWKS---- 373 Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILST 337 + + VDPPR G D+ + + I+YISCNP + RD IL+ Sbjct: 374 --------QGIKPGVVMVDPPRKGCDETFLTTLLKLNPKRIVYISCNPSTQQRDAQILAE 425 Query: 338 THTIERLALFDQFPYTRHMECGVLLVRKP 366 + + + D FP T H+E L VRK Sbjct: 426 QYELVEITPVDMFPQTTHIETVALFVRKD 454 >gi|46907934|ref|YP_014323.1| RNA methyltransferase [Listeria monocytogenes serotype 4b str. F2365] gi|47094248|ref|ZP_00231958.1| RNA methyltransferase, TrmA family [Listeria monocytogenes str. 4b H7858] gi|226224306|ref|YP_002758413.1| similar to RNA methyltransferase [Listeria monocytogenes Clip81459] gi|254932851|ref|ZP_05266210.1| RNA methyltransferase [Listeria monocytogenes HPB2262] gi|255520198|ref|ZP_05387435.1| hypothetical protein LmonocFSL_03022 [Listeria monocytogenes FSL J1-175] gi|51316674|sp|Q71YW4|Y1727_LISMF RecName: Full=Uncharacterized RNA methyltransferase LMOf2365_1727 gi|46881203|gb|AAT04500.1| RNA methyltransferase, TrmA family [Listeria monocytogenes serotype 4b str. F2365] gi|47017376|gb|EAL08199.1| RNA methyltransferase, TrmA family [Listeria monocytogenes str. 4b H7858] gi|225876768|emb|CAS05477.1| Putative similar to RNA methyltransferase [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|293584405|gb|EFF96437.1| RNA methyltransferase [Listeria monocytogenes HPB2262] gi|328466462|gb|EGF37605.1| RNA methyltransferase [Listeria monocytogenes 1816] gi|332312145|gb|EGJ25240.1| hypothetical protein LMOSA_26260 [Listeria monocytogenes str. Scott A] Length = 459 Score = 277 bits (708), Expect = 2e-72, Method: Composition-based stats. Identities = 81/390 (20%), Positives = 142/390 (36%), Gaps = 40/390 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54 L Y QL K D + Q + + I +P YR +++F Sbjct: 84 GCQLQHVAYSAQLELKRDIVIQSIEKHTKIDPTKLKIRPTIGMEDPWRYRNKSQFQTRMV 143 Query: 55 GDDLYH-IMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRA 102 G +F + + + I+ + L+ + + ++R Sbjct: 144 GSGQVETGLFGANSHQLVPIEDCIVQQPVTIKVTNFVRDLLEKYGVPIYDEKAGSGIVRT 203 Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162 + + T ++ +T + L RE + AL +Q + +A + I Sbjct: 204 IVVRTGVKTGETQLVFITN--SKKL-PKKREMLAEIEAALPEVTSIMQNVNQAKSSLIFG 260 Query: 163 DRDYV---DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYC 218 D ++ E + L + +F Q N + + V A + L++ YC Sbjct: 261 DETFLLAGKESIEEKLMELEFDLSARAFFQLNPFQTERLYQEVEKALVLTGSETLVDAYC 320 Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278 G G A V ++I S+E A+ N N + NV +++ E Sbjct: 321 GVGTIGQAFAGKVKEVRGMDIIPESIEDAKRNAEKNGIENVYYEVGKAEDVLPKWVNE-- 378 Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILS 336 +R + VDPPRSG D + + ++Y+SCNP +L RDL++L+ Sbjct: 379 ----------GFRPDAVIVDPPRSGCDQGLIKSLLDVEAKQLVYVSCNPSTLARDLALLA 428 Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVRKP 366 + I + D FP T H+E VLL K Sbjct: 429 KKYRIRYMQPVDMFPQTAHVETVVLLQLKD 458 >gi|262113703|emb|CAR95370.1| 23S rRNA m(5)U 1939 methyltransferase [Streptococcus phage phi-m46.1] Length = 462 Score = 277 bits (708), Expect = 2e-72, Method: Composition-based stats. Identities = 79/379 (20%), Positives = 146/379 (38%), Gaps = 40/379 (10%) Query: 10 YEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 YE QL K +++ + I +EP+ YR +A+ + L F Sbjct: 99 YEDQLTFKKKQVQDSLYKIAGISDVTVESTIGMTEPLAYRNKAQVPVRRVNGQLETGFFR 158 Query: 65 QQTKERMRIDYFMPGSLLINAL-----------MIEMMATIRLEPLLRAKLFQIDYLTSQ 113 + + + + I + I+ L I+ LLR + + + + Sbjct: 159 KHSHDLIPISDYYIQDKEIDRLINFTRDLLRRFDIKPYDETEQTGLLRNIVVRRGHYSG- 217 Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD----YVDE 169 + ++ L+ R + ++ +A A IQ I N T +D Y + Sbjct: 218 --EMMLVLVTTRPKVFRVDQVIEKIVEAFPAVVSIIQNINDKN-TNAIFGKDFKTLYGKD 274 Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLA 228 +T + Y SF Q N + + + +A + + D +++ Y G G L A Sbjct: 275 TITDSMLGNNYAISAQSFYQVNTIMAEKLYQTAIAFSDLSKDDIVIDAYSGIGTIGLSFA 334 Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288 + V VE+ + +V A+ N A N + N + +++ ++ Sbjct: 335 KTVKAVYGVEVIEAAVRDAQQNAALNGITNAYFIADTAEHAMATWAKD------------ 382 Query: 289 SYRFKTIFVDPPRSGLDDATVGM--VQAYPHILYISCNPDSLCRDLSILST-THTIERLA 345 + I VDPPR GL ++ + I Y+SCNP ++ RD+ + + ++ Sbjct: 383 GIKPSVILVDPPRKGLTESFIQASVAMGPQKITYVSCNPATMARDIKRYQELGYKLTKVQ 442 Query: 346 LFDQFPYTRHMECGVLLVR 364 D FP T H+EC LLV+ Sbjct: 443 PVDLFPQTHHVECVALLVK 461 >gi|21910560|ref|NP_664828.1| TrmA family RNA methyltransferase [Streptococcus pyogenes MGAS315] gi|21904760|gb|AAM79631.1| putative RNA methyltransferase, TrmA family [Streptococcus pyogenes MGAS315] Length = 409 Score = 277 bits (708), Expect = 2e-72, Method: Composition-based stats. Identities = 80/380 (21%), Positives = 149/380 (39%), Gaps = 40/380 (10%) Query: 10 YEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 YE QL K +++ + I +EP+ YR +A+ + L F Sbjct: 46 YEDQLTFKKKQVQDSLYKIAGISDVTVESTIGMTEPLAYRNKAQVPVRRVNGQLETGFFR 105 Query: 65 QQTKERMRIDYFMPGSLLINAL-----------MIEMMATIRLEPLLRAKLFQIDYLTSQ 113 + + + + I + I+ L I+ LLR + + + + Sbjct: 106 KHSHDLIPISDYYIQDKEIDRLINFTRDLLRRFDIKPYDETEQTGLLRNIVVRRGHYSG- 164 Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD----YVDE 169 + ++ L+ R + ++ +A A IQ I N T +D Y + Sbjct: 165 --EMMLVLVTTRPKVFRVDQVIEKIVEAFPAVVSIIQNINDKN-TNAIFGKDFKTLYGKD 221 Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLA 228 +T + Y SF Q N + + + +A + + D +++ Y G G L A Sbjct: 222 TITDSMLGNNYAISAQSFYQVNTVMAEKLYQTAIAFSDLSKDDIVIDAYSGIGTIGLSFA 281 Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288 + V VE+ + +V A++N A N + N V +++ ++ Sbjct: 282 KTVKAVYGVEVIEAAVRDAQHNAALNGITNAYFVADTAEHAMATWAKD------------ 329 Query: 289 SYRFKTIFVDPPRSGLDDATVGM--VQAYPHILYISCNPDSLCRDLSILST-THTIERLA 345 + I VDPPR GL ++ + I Y+SCNP ++ RD+ + + ++ Sbjct: 330 GIKPSVILVDPPRKGLTESFIQASVAMGPQKITYVSCNPATMARDIKRYQELGYKLAKVQ 389 Query: 346 LFDQFPYTRHMECGVLLVRK 365 D FP T H+EC VLL+++ Sbjct: 390 PVDLFPQTHHVECVVLLIKE 409 >gi|297617338|ref|YP_003702497.1| RNA methyltransferase, TrmA family [Syntrophothermus lipocalidus DSM 12680] gi|297145175|gb|ADI01932.1| RNA methyltransferase, TrmA family [Syntrophothermus lipocalidus DSM 12680] Length = 458 Score = 277 bits (708), Expect = 2e-72, Method: Composition-based stats. Identities = 81/390 (20%), Positives = 146/390 (37%), Gaps = 40/390 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWHDGDD 57 L Y +QL K + + Q + ++ P HYR + +FH + Sbjct: 86 GCQLQHIDYSRQLELKREVVVQALKRIGHLECEVLPVRGMDNPWHYRNKGQFHAGKNDGR 145 Query: 58 LYHIMFDQQTKERMRIDYFMPGSLLINAL-----------MIEMMATIRLEPLLRAKLFQ 106 ++ F + + + + S +N L +E+ + LR + + Sbjct: 146 VFFGFFKPGSYQAVPARDCLLFSPAVNNLLGYLEQSLTESGVEVYHPQTGDGRLRNLVIR 205 Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWR---ECAIRLRDALHARKYQIQLIGRANKTKICLD 163 T + VT L + E +L + K ++ Sbjct: 206 ESSATGEMMAVFVTTHEKSLNSHFLQGLGEAFPQLTSVYQNINPGRSPLALGPKFRLLSG 265 Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNG 221 + +T L + SF Q N + +L +++ + G +L+ Y G G Sbjct: 266 KP----EITDKIEHLSFEISPGSFFQVNR-VQTELLYRIVSEFAELNGTETVLDAYSGVG 320 Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281 +L LA +V+AVE + +V A+ N N + NV+ + +++ Sbjct: 321 TIALFLAERAKKVIAVEENEKAVADAQKNARGNGIKNVRFIAQRVEDWV----------- 369 Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILS-TT 338 + + R VDPPR GL+ + + + ++Y+SCNP +L RDL L+ Sbjct: 370 -TNAALDHERPDVAVVDPPRQGLNRGFLQALVTMSPARLVYVSCNPATLARDLGHLANQG 428 Query: 339 HTIERLALFDQFPYTRHMECGVLLVRKPSG 368 +TI + D FP T H+E VLL + G Sbjct: 429 YTINAVQPVDMFPQTGHVETVVLLKKNNRG 458 >gi|312277778|gb|ADQ62435.1| TRNA methyltransferase, TrmA family [Streptococcus thermophilus ND03] Length = 454 Score = 277 bits (708), Expect = 2e-72, Method: Composition-based stats. Identities = 82/386 (21%), Positives = 146/386 (37%), Gaps = 38/386 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54 L+ +Y++QL K D L Q + F+ N + I +P HYR + +F I Sbjct: 81 GCQLMHLRYDKQLEFKTDLLGQALKKFKPANFESYEIRPTIGMKQPQHYRAKLQFQIRSF 140 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----------LRAKL 104 G + +F + + + ID + L A+M ++ + L +R + Sbjct: 141 GGSVKAGLFAEGSHRLINIDDCLVQDELTQAIMNKVTNLLDKYKLPIYNERKISGIRTVM 200 Query: 105 FQIDYLTSQSDQAIVTL--IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162 + ++Q VT + L + Y +T+I Sbjct: 201 IRRALGSNQVQLIFVTSNPVSLTKLVKELTLSYPEIVTVAVNYNYSKSSEIYGQETEIIW 260 Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNG 221 +D + E + L +F Q N + + A L++ YCG G Sbjct: 261 GQDTIQEEVLDYNFAL----SPRAFYQLNPKQTEVLYGQAVEALEVDKSEHLIDAYCGVG 316 Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281 L A+ + ++I ++E AR N + ++N +++ +E Sbjct: 317 TIGLAFAKKVSTIRGMDIIPEAIEDARKNAESLGLDNAHYEVGKAEDIIPRWYKE----- 371 Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTTH 339 YR + VDPPR+GLD + + Y ++Y+SCN +L RDL L+ + Sbjct: 372 -------GYRADALIVDPPRTGLDSKLLKTILEYTPKKMVYVSCNVSTLARDLVSLAKVY 424 Query: 340 TIERLALFDQFPYTRHMECGVLLVRK 365 + + D FP+T E V L +K Sbjct: 425 DVNYIQSVDMFPHTARTEAVVKLTKK 450 >gi|222151872|ref|YP_002561032.1| RNA methyltransferase, TrmA family protein homolog [Macrococcus caseolyticus JCSC5402] gi|222121001|dbj|BAH18336.1| RNA methyltransferase, TrmA family protein homolog [Macrococcus caseolyticus JCSC5402] Length = 454 Score = 277 bits (708), Expect = 2e-72, Method: Composition-based stats. Identities = 85/385 (22%), Positives = 151/385 (39%), Gaps = 40/385 (10%) Query: 4 TLLIDQYEQQLAEKVDRLRQMML---AFQVPNL--QIFRSEPIHYRMRAEFHIWHDGDDL 58 TL Y+ QL K + + F+ + + P YR +A+ + ++ Sbjct: 86 TLQHMSYDAQLKFKQHLVESAFIRLGKFKKVKVWETVGMDYPYEYRNKAQIPVRSVNGNV 145 Query: 59 YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKLFQI 107 F + + + + ++ F +I+ ++++ +R +R + + Sbjct: 146 ETGFFRKNSHQLVPVENFYIQHKVIDEAIVKVRDILRKYDIVPYNERNHNGEIRHIVVKR 205 Query: 108 DYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD-- 165 + T Q +VT ++ + D + + + + L R+ Sbjct: 206 GHYTGQLMIILVTNKKRLANIESITHDIVNTIDNVESVVLNFNNQ----EGNVILGRNNT 261 Query: 166 --YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGN 222 + T L +R NSF Q N + + L A + +L+ YCG G Sbjct: 262 VLHGTPYYTDKILGLEFRVSPNSFFQVNTPQAETLYKLALEAANLKGHETVLDAYCGIGT 321 Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282 SL LA+H ++V A+EI S++ A+ N N ++NV S+ E L Sbjct: 322 ISLALAQHAEQVYAMEIVHESIKMAKQNAKMNGIDNVHFETGSADEI------------L 369 Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILS-TTH 339 F VDPPR GLDD + + Q+ I+Y+SCNP + RD + + Sbjct: 370 PKWSEQGVNFDVAVVDPPRKGLDDDFIQTLINQSPKTIVYVSCNPGTCARDCRKFADAGY 429 Query: 340 TIERLALFDQFPYTRHMECGVLLVR 364 +E + D FP T H+EC V L + Sbjct: 430 KLEYVKPVDLFPQTPHVECVVKLTK 454 >gi|191638003|ref|YP_001987169.1| tRNA (Uracil-5-)-methyltransferase [Lactobacillus casei BL23] gi|190712305|emb|CAQ66311.1| tRNA (Uracil-5-)-methyltransferase [Lactobacillus casei BL23] gi|327382080|gb|AEA53556.1| 23S rRNA (Uracil-5-)-methyltransferase RumA [Lactobacillus casei LC2W] Length = 457 Score = 276 bits (707), Expect = 3e-72, Method: Composition-based stats. Identities = 87/380 (22%), Positives = 161/380 (42%), Gaps = 38/380 (10%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQV---PNLQIFRSEPIHYRMRAEFHIWHDGDDLYHI 61 L I Y QL K +++++ + I + P+ YR +A+ + +L Sbjct: 90 LSILAYPAQLQFKQKQIQELYKKAHLDIAVLPTIGMTNPLGYRNKAQVPVRTVNGELQTG 149 Query: 62 MFDQQTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKLFQIDYL 110 + + + + + I+ F+ I+ ++ + +R + ++R + + + Sbjct: 150 FYKKHSHDLVPIEDFLIQDPKIDQAIVVVRDLLRKYHVPAYDERANKGVIRNIMVRRGHY 209 Query: 111 TSQSDQAIVTLIYHRL-LDDAWRECAIRLRDALHAR---KYQIQLIGRANKTKICLDRDY 166 T Q +V+ + L D E + L + + + K++ DY Sbjct: 210 TKQMMIVLVSQTWQVPHLKDIVEEITLALPEVTSVVVNLNDKRTNVILGRKSRTIYGEDY 269 Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELYCGNGNFSL 225 + ++L + ++ SF Q N + + + AA + ++++ Y G G SL Sbjct: 270 LLDKLLGSE----FQISPVSFYQVNPVQTEVLYKKAIEAAGLTGKENVIDAYSGIGTISL 325 Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285 +ARH V VE+ +P+V AR N NH++NV ++E Q + N L Sbjct: 326 TMARHAKHVYGVEVVEPAVRDARANAVRNHIDNVTFEVGKAEEVIQRWKD----NELP-- 379 Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST-THTIE 342 + VDPPR GLD + + V P I+Y+SCNP +L RDL +L+ +T + Sbjct: 380 ------VDVLMVDPPRKGLDKSFIDAVGYMKPPKIVYVSCNPATLARDLQLLAAFGYTAK 433 Query: 343 RLALFDQFPYTRHMECGVLL 362 D FP T+H+E L Sbjct: 434 ETQPVDMFPQTQHIESITAL 453 >gi|301066110|ref|YP_003788133.1| tRNA (uracil-5-)-methyltransferase-like protein [Lactobacillus casei str. Zhang] gi|300438517|gb|ADK18283.1| tRNA (uracil-5-)-methyltransferase related enzyme [Lactobacillus casei str. Zhang] Length = 454 Score = 276 bits (707), Expect = 3e-72, Method: Composition-based stats. Identities = 87/380 (22%), Positives = 161/380 (42%), Gaps = 38/380 (10%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQV---PNLQIFRSEPIHYRMRAEFHIWHDGDDLYHI 61 L I Y QL K +++++ + I + P+ YR +A+ + +L Sbjct: 87 LSILAYPAQLQFKQKQIQELYKKAHLDIAVLPTIGMTNPLGYRNKAQVPVRTVNGELQTG 146 Query: 62 MFDQQTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKLFQIDYL 110 + + + + + I+ F+ I+ ++ + +R + ++R + + + Sbjct: 147 FYKKHSHDLVPIEDFLIQDPKIDQAIVVVRDLLRKYHVPAYDERANKGVIRNIMVRRGHY 206 Query: 111 TSQSDQAIVTLIYHRL-LDDAWRECAIRLRDALHAR---KYQIQLIGRANKTKICLDRDY 166 T Q +V+ + L D E + L + + + K++ DY Sbjct: 207 TKQMMIVLVSQTWQVPHLKDIVEEITLALPEVTSVVVNLNDKRTNVILGRKSRTIYGEDY 266 Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELYCGNGNFSL 225 + ++L + ++ SF Q N + + + AA + ++++ Y G G SL Sbjct: 267 LLDKLLGSE----FQISPVSFYQVNPVQTEVLYKKAIEAAGLTGKKNVIDAYSGIGTISL 322 Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285 +ARH V VE+ +P+V AR N NH++NV ++E Q + N L Sbjct: 323 TMARHAKHVYGVEVVEPAVRDARANAVRNHIDNVTFEVGKAEEVIQRWKD----NELP-- 376 Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST-THTIE 342 + VDPPR GLD + + V P I+Y+SCNP +L RDL +L+ +T + Sbjct: 377 ------VDVLMVDPPRKGLDKSFIDAVGYMKPPKIVYVSCNPATLARDLQLLAAFGYTAK 430 Query: 343 RLALFDQFPYTRHMECGVLL 362 D FP T+H+E L Sbjct: 431 ETQPVDMFPQTQHIESITAL 450 >gi|170754817|ref|YP_001783005.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum B1 str. Okra] gi|169120029|gb|ACA43865.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum B1 str. Okra] Length = 461 Score = 276 bits (707), Expect = 3e-72, Method: Composition-based stats. Identities = 77/388 (19%), Positives = 153/388 (39%), Gaps = 39/388 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54 + Y+ QL K R+ + ++ I P YR + + + + Sbjct: 85 GCQVQHYSYKAQLEFKKQRVIDSLERIGKLDIDKIKIEDTIGMENPYRYRNKIQMPVRFE 144 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGSL-------LINALMIEMMATIRLEPLLRAKLFQI 107 ++ + +T E + +I M++ + E + + I Sbjct: 145 KGEIKIGFYKSRTHEVADVKECFIQDEQADKIIQIIRNWMVKHNISAYNEETGKGFIRHI 204 Query: 108 DYLTS-QSDQAIVTLIYHRLLDDAWRECAIR--LRDALHARKYQIQLIGRANKTKICLDR 164 + ++ + ++ ++ ++ + ++E I +++ L+ K IQ I KT + L Sbjct: 205 MVRKAFKNKELMLVIVTNKEEEIPYKEELINEVIKEFLN-IKSIIQNINT-KKTNVILGE 262 Query: 165 D----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCG 219 + + +T + SF Q N + + L + + + YCG Sbjct: 263 KCITLWGKDTITDYIDKFKFNISPLSFFQVNPIQTEVLYKKALEFANLKGEEIVFDAYCG 322 Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279 G SL L++ +V VEI K +++ A+ N N ++N + S+E Sbjct: 323 TGTISLFLSQKAKKVYGVEIIKEAIDNAKDNAKENRIDNAEFFVGKSEEV---------- 372 Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILST 337 + D+ + + VDPPR G + + + A I+Y+SC+P +L RDL IL+ Sbjct: 373 --IPDLIDKGIKADVVVVDPPRKGCEKTLLEAIAATKPKRIVYVSCDPGTLARDLGILNG 430 Query: 338 -THTIERLALFDQFPYTRHMECGVLLVR 364 + + + D FP T H+E VL+ R Sbjct: 431 LGYETKEVQTVDMFPQTSHVETIVLIQR 458 >gi|323694104|ref|ZP_08108283.1| hypothetical protein HMPREF9475_03146 [Clostridium symbiosum WAL-14673] gi|323501821|gb|EGB17704.1| hypothetical protein HMPREF9475_03146 [Clostridium symbiosum WAL-14673] Length = 488 Score = 276 bits (707), Expect = 3e-72, Method: Composition-based stats. Identities = 90/425 (21%), Positives = 158/425 (37%), Gaps = 77/425 (18%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-------------------------------- 29 L + YE+QL K ++ + Sbjct: 81 GCQLQMMSYEEQLKFKQRKVYNNLKRIGGLDNLYLPGEGPGAGENVGDGEGDRAGDREGG 140 Query: 30 -------VPNLQIFRSEPIHYRMRAEFHIWHDGDD-LYHIMFDQQTKERMRIDYFMPG-- 79 + I +P YR +A+F + ++ + + +T + D + G Sbjct: 141 ESGRKPVIMEPIIGMEDPWRYRNKAQFPFGMNKENEVIAGFYAGRTHCIIENDDCLLGIQ 200 Query: 80 -SLLINALMIEMMATIRLEP--------LLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDA 130 + I A + ++M ++P L+R L + + T + V + Sbjct: 201 ENREILAAVKQIMTQYGIKPYQEESHTGLIRHVLIRKGFRTGELMVCFVVNGRKLPYSEG 260 Query: 131 WRECAIRLRDALHARKYQIQLIGRANKTKICLDRD----YVDERLTVAGRTLIYRQIENS 186 + E + + + + Y + + KT + L R+ Y +T + YR S Sbjct: 261 FVERLLEIPG-MTSISYNVNM----EKTNVILGREVVNLYGPGYITDYIGNVKYRISPLS 315 Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 F Q N + L G+ G+ + +LYCG G SL L++ +V VEI ++ Sbjct: 316 FYQVNPVQTERLYGTALE-YAGLTGEETVWDLYCGIGTISLFLSQKAKKVYGVEIVPQAI 374 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 E AR N N + NV+ ++E E + I VDPPR G Sbjct: 375 EDARENARLNGIENVEFFVGKAEEVLPKQYEEDK-----------VYADVIVVDPPRKGC 423 Query: 305 DDATVGMVQAY--PHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVL 361 D + + ++Y+SC+ +L RD+ L + +ER++ D FP + H+E L Sbjct: 424 DPVCLDTIVMMGPKKVVYVSCDSATLARDVKYLEERGYWVERVSCVDMFPMSGHVETATL 483 Query: 362 LVRKP 366 LVRKP Sbjct: 484 LVRKP 488 >gi|315303539|ref|ZP_07874104.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria ivanovii FSL F6-596] gi|313628091|gb|EFR96659.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria ivanovii FSL F6-596] Length = 459 Score = 276 bits (707), Expect = 3e-72, Method: Composition-based stats. Identities = 81/390 (20%), Positives = 143/390 (36%), Gaps = 42/390 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54 L Y QL K D + Q + + Q I +P YR +++F Sbjct: 84 GCQLQHVAYSAQLELKRDIVIQSIEKHTKIDPQKLNIRATIGMEDPWRYRNKSQFQTRLV 143 Query: 55 GDDLYH-IMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRA 102 G +F + + + I+ + L+ + + ++R Sbjct: 144 GSGQVETGLFGVNSHQLVPIEDCIVQQPVTIKVTNFVRDLLEKYGVPIYDEKAGSGIVRT 203 Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162 + + T ++ +T + L RE + AL +Q + +A K+ I Sbjct: 204 LVVRTGVKTGETQLVFITN--SKKL-PKKREMLAEIEAALPEVTSIMQNVNQA-KSSIIF 259 Query: 163 DRD----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELY 217 + E + L + +F Q N + + V A + L++ Y Sbjct: 260 GEETFLLAGKESIHEKLMELEFDLSARAFFQLNPFQTERLYQEVEKALVLTGSETLVDAY 319 Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277 CG G A V ++ S+E A+ N N + NV ++E +E Sbjct: 320 CGVGTIGQAFASKVKEVRGMDTIPESIEDAKRNAEKNGLENVYYEVGKAEEVFPKWMKE- 378 Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL 335 ++ + VDPPRSG D +G + ++Y+SCNP +L RDL++L Sbjct: 379 -----------GFKPDAVIVDPPRSGCDQGLIGSLLQAEAKQLVYVSCNPSTLARDLALL 427 Query: 336 STTHTIERLALFDQFPYTRHMECGVLLVRK 365 + + + + D FP T H+E VLL K Sbjct: 428 AKKYRVRYMQPVDMFPQTAHVETVVLLELK 457 >gi|73662203|ref|YP_300984.1| RNA methyltransferase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|72494718|dbj|BAE18039.1| putative RNA methyltransferase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 453 Score = 276 bits (707), Expect = 3e-72, Method: Composition-based stats. Identities = 71/387 (18%), Positives = 147/387 (37%), Gaps = 40/387 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMM---LAFQVPNL--QIFRSEPIHYRMRAEFHIWHDG- 55 L Y+ QL K +++ + F+ + I P +YR +++ + + Sbjct: 82 GCQLQHMTYQAQLNMKKEQVVNLFQRKAGFKDTIIHDTIGMENPWYYRNKSQIPVGKNNE 141 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGSLL-----------INALMIEMMATIRLEPLLRAKL 104 + + + Q++ + + +D + L N L I + + + ++R + Sbjct: 142 NKVITGFYRQRSHDIINMDECLIQDQLHQEVINKLKAWFNELNISVYNERKKQGMMRHVV 201 Query: 105 FQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR 164 + + S + +V + + RL+ A Q + + + + + Sbjct: 202 IRTGH---HSRELMVIFVTNGKKFKQGDILTERLKQHFPAIVSIKQNVND-THSNVIMGQ 257 Query: 165 D----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCG 219 + Y + + + ++ + SF Q N+ + + + A + +L+ YCG Sbjct: 258 NSYTLYGKDEIVDMLSDVTFKINDQSFYQINSIQTEKLYQRAIDYAELQGEETVLDTYCG 317 Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279 G L +A V VE+ ++ A+ N N N V ++E + E Sbjct: 318 IGTIGLYMAPKAKHVYGVEVVPEAITDAQQNATINQFENTTFVCGKAEEVILKWKSE--- 374 Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST 337 R + VDPPR G D+ + + I+YISCNP + RD +L+ Sbjct: 375 ---------GIRPDVVMVDPPRKGCDETFLKTLLELNPQKIVYISCNPSTQQRDAQLLAN 425 Query: 338 THTIERLALFDQFPYTRHMECGVLLVR 364 + + ++ D FP+T H+E R Sbjct: 426 QYKLTQITPVDMFPHTTHVETVAQFER 452 >gi|226950817|ref|YP_002805908.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum A2 str. Kyoto] gi|226841903|gb|ACO84569.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum A2 str. Kyoto] Length = 461 Score = 276 bits (707), Expect = 3e-72, Method: Composition-based stats. Identities = 75/387 (19%), Positives = 144/387 (37%), Gaps = 37/387 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54 + Y+ QL K R+ + ++ I P YR + + + + Sbjct: 85 GCQVQHYSYKAQLEFKKQRVIDSLERIGKLDIDKIKIEDTIGMENPYRYRNKIQMPVRFE 144 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGSL-------LINALMIEMMATIRLEPLLRAKLFQI 107 ++ + +T E + +I M++ + E + + I Sbjct: 145 KGEIKIGFYKSRTHEVADVKECFIQDEQADKIIQIIRNWMVKHNISAYNEETGKGFIRHI 204 Query: 108 DYLTSQSDQAIVTLIYHRLLDDA--WRECAIRLRDALHARKYQIQLIGRANKTKICLDRD 165 + ++ ++ +I ++ E + K IQ I KT + L Sbjct: 205 MVRKAFKNKELMLVIVTNKEEEIPYKEELINEVIKEFSNIKSIIQNINT-KKTNVILGEK 263 Query: 166 YVD----ERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGN 220 + + +T + SF Q N + + L + + + YCG Sbjct: 264 CITLWGKDTITDYIDKFKFNISPLSFFQVNPIQTEVLYKKALEFANLKGEEIVFDAYCGT 323 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G SL L++ +V VEI K +++ A+ N N ++N + S+E Sbjct: 324 GTISLFLSQKAKKVYGVEIIKEAIDNAKDNAKENRIDNAEFFVGKSEEV----------- 372 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILST- 337 + D+ + + + VDPPR G + + + A I+Y+SC+ +L RDL IL+ Sbjct: 373 -IPDLIDKGIKAEVVVVDPPRKGCEKTLLEAIAATKPKRIVYVSCDSGTLARDLGILNGL 431 Query: 338 THTIERLALFDQFPYTRHMECGVLLVR 364 + + + D FP T H+E VL+ R Sbjct: 432 GYETKEVQPVDMFPQTSHVETIVLIQR 458 >gi|327385224|gb|AEA56698.1| 23S rRNA (Uracil-5-)-methyltransferase RumA [Lactobacillus casei BD-II] Length = 454 Score = 276 bits (707), Expect = 3e-72, Method: Composition-based stats. Identities = 87/380 (22%), Positives = 161/380 (42%), Gaps = 38/380 (10%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQV---PNLQIFRSEPIHYRMRAEFHIWHDGDDLYHI 61 L I Y QL K +++++ + I + P+ YR +A+ + +L Sbjct: 87 LSILAYPAQLQFKQKQIQELYKKAHLDIAVLPTIGMTNPLGYRNKAQVPVRTVNGELQTG 146 Query: 62 MFDQQTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKLFQIDYL 110 + + + + + I+ F+ I+ ++ + +R + ++R + + + Sbjct: 147 FYKKHSHDLVPIEDFLIQDPKIDQAIVVVRDLLRKYHVPAYDERANKGVIRNIMVRRGHY 206 Query: 111 TSQSDQAIVTLIYHRL-LDDAWRECAIRLRDALHAR---KYQIQLIGRANKTKICLDRDY 166 T Q +V+ + L D E + L + + + K++ DY Sbjct: 207 TKQMMIVLVSQTWQVPHLKDIVEEITLALPEVTSVVVNLNDKRTNVILGRKSRTIYGEDY 266 Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELYCGNGNFSL 225 + ++L + ++ SF Q N + + + AA + ++++ Y G G SL Sbjct: 267 LLDKLLGSE----FQISPVSFYQVNPVQTEVLYKKAIEAAGLTGKENVIDAYSGIGTISL 322 Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285 +ARH V VE+ +P+V AR N NH++NV ++E Q + N L Sbjct: 323 TMARHAKHVYGVEVVEPAVRDARANAVRNHIDNVTFEVGKAEEVIQRWKD----NELP-- 376 Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST-THTIE 342 + VDPPR GLD + + V P I+Y+SCNP +L RDL +L+ +T + Sbjct: 377 ------VDVLMVDPPRKGLDKSFIDAVGYMKPPKIVYVSCNPATLARDLQLLAAFGYTAK 430 Query: 343 RLALFDQFPYTRHMECGVLL 362 D FP T+H+E L Sbjct: 431 ETQPVDMFPQTQHIESITAL 450 >gi|213028321|ref|ZP_03342768.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 205 Score = 276 bits (707), Expect = 3e-72, Method: Composition-based stats. Identities = 145/202 (71%), Positives = 172/202 (85%) Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNG 221 LD+DY+DERL VAG+ +IYRQ+ENSFTQPNA +N+ MLEW L TK +GDLLELYCGNG Sbjct: 2 LDQDYIDERLPVAGKEIIYRQVENSFTQPNAAMNIQMLEWALEVTKDSKGDLLELYCGNG 61 Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281 NFSL LAR+F+RVLA EIAKPSV AA+YNIAANH++NV+I+RM+++EFTQAM REFNR Sbjct: 62 NFSLALARNFNRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNR 121 Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTI 341 L+ ID+ Y+ +TIFVDPPRSGLD T MVQAYP ILYISCNP++LC++L LS THT+ Sbjct: 122 LQGIDLKRYQCETIFVDPPRSGLDSETEKMVQAYPRILYISCNPETLCKNLETLSQTHTV 181 Query: 342 ERLALFDQFPYTRHMECGVLLV 363 RLALFDQFPYT HMECGVLL Sbjct: 182 SRLALFDQFPYTHHMECGVLLT 203 >gi|15675282|ref|NP_269456.1| putative RNA methyltransferase [Streptococcus pyogenes M1 GAS] gi|94990664|ref|YP_598764.1| 23S rRNA m(5)U 1939 methyltransferase [Streptococcus pyogenes MGAS10270] gi|50401663|sp|Q99Z86|Y1346_STRP1 RecName: Full=Uncharacterized RNA methyltransferase SPy_1346/M5005_Spy1098 gi|13622457|gb|AAK34177.1| putative RNA methyltransferase [Streptococcus pyogenes M1 GAS] gi|94544172|gb|ABF34220.1| 23S rRNA m(5)U 1939 methyltransferase [Streptococcus pyogenes MGAS10270] Length = 462 Score = 276 bits (707), Expect = 3e-72, Method: Composition-based stats. Identities = 80/380 (21%), Positives = 148/380 (38%), Gaps = 40/380 (10%) Query: 10 YEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 YE QL K +++ + I +EP+ YR +A+ + L F Sbjct: 99 YEDQLTFKKKQVQDSLYKIAGISDVTVESTIGMTEPLAYRNKAQVPVRRVNGQLETGFFR 158 Query: 65 QQTKERMRIDYFMPGSLLINAL-----------MIEMMATIRLEPLLRAKLFQIDYLTSQ 113 + + + + I + I+ L I+ LLR + + + + Sbjct: 159 KHSHDLIPISDYYIQDKEIDRLINFTRDLLRRFDIKPYDETEQTGLLRNIVVRRGHYSG- 217 Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD----YVDE 169 + ++ L+ R + ++ +A A IQ I N T +D Y + Sbjct: 218 --EMMLVLVTTRPKVFRVDQVIEKIVEAFPAVVSIIQNINDKN-TNAIFGKDFKTLYGKD 274 Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLA 228 +T + Y SF Q N + + + +A + + D +++ Y G G L A Sbjct: 275 TITDSMLGNNYAISAQSFYQVNTVMAEKLYQTAIAFSDLSKDDIVIDAYSGIGTIGLSFA 334 Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288 + V VE+ + +V A+ N A N + N V +++ ++ Sbjct: 335 KTVKAVYGVEVIEAAVRDAQQNAALNGITNAYFVADTAEHAMATWAKD------------ 382 Query: 289 SYRFKTIFVDPPRSGLDDATVGM--VQAYPHILYISCNPDSLCRDLSILST-THTIERLA 345 + I VDPPR GL ++ + I Y+SCNP ++ RD+ + + ++ Sbjct: 383 GIKPSVILVDPPRKGLTESFIQASVAMGPQKITYVSCNPATMARDIKRYQELGYKLAKVQ 442 Query: 346 LFDQFPYTRHMECGVLLVRK 365 D FP T H+EC VLL+++ Sbjct: 443 PVDLFPQTHHVECVVLLIKE 462 >gi|28895748|ref|NP_802098.1| RNA methyltransferase [Streptococcus pyogenes SSI-1] gi|50914416|ref|YP_060388.1| 23S rRNA m(5)U 1939 methyltransferase [Streptococcus pyogenes MGAS10394] gi|50401597|sp|Q8K722|Y1024_STRP3 RecName: Full=Uncharacterized RNA methyltransferase SpyM3_1024/SPs0836 gi|73920489|sp|Q5XBK8|Y1070_STRP6 RecName: Full=Uncharacterized RNA methyltransferase M6_Spy1070 gi|28810997|dbj|BAC63931.1| putative RNA methyltransferase [Streptococcus pyogenes SSI-1] gi|50903490|gb|AAT87205.1| 23S rRNA m(5)U 1939 methyltransferase [Streptococcus pyogenes MGAS10394] Length = 462 Score = 276 bits (707), Expect = 3e-72, Method: Composition-based stats. Identities = 80/380 (21%), Positives = 149/380 (39%), Gaps = 40/380 (10%) Query: 10 YEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 YE QL K +++ + I +EP+ YR +A+ + L F Sbjct: 99 YEDQLTFKKKQVQDSLYKIAGISDVTVESTIGMTEPLAYRNKAQVPVRRVNGQLETGFFR 158 Query: 65 QQTKERMRIDYFMPGSLLINAL-----------MIEMMATIRLEPLLRAKLFQIDYLTSQ 113 + + + + I + I+ L I+ LLR + + + + Sbjct: 159 KHSHDLIPISDYYIQDKEIDRLINFTRDLLRRFDIKPYDETEQTGLLRNIVVRRGHYSG- 217 Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD----YVDE 169 + ++ L+ R + ++ +A A IQ I N T +D Y + Sbjct: 218 --EMMLVLVTTRPKVFRVDQVIEKIVEAFPAVVSIIQNINDKN-TNAIFGKDFKTLYGKD 274 Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLA 228 +T + Y SF Q N + + + +A + + D +++ Y G G L A Sbjct: 275 TITDSMLGNNYAISAQSFYQVNTVMAEKLYQTAIAFSDLSKDDIVIDAYSGIGTIGLSFA 334 Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288 + V VE+ + +V A++N A N + N V +++ ++ Sbjct: 335 KTVKAVYGVEVIEAAVRDAQHNAALNGITNAYFVADTAEHAMATWAKD------------ 382 Query: 289 SYRFKTIFVDPPRSGLDDATVGM--VQAYPHILYISCNPDSLCRDLSILST-THTIERLA 345 + I VDPPR GL ++ + I Y+SCNP ++ RD+ + + ++ Sbjct: 383 GIKPSVILVDPPRKGLTESFIQASVAMGPQKITYVSCNPATMARDIKRYQELGYKLAKVQ 442 Query: 346 LFDQFPYTRHMECGVLLVRK 365 D FP T H+EC VLL+++ Sbjct: 443 PVDLFPQTHHVECVVLLIKE 462 >gi|71910911|ref|YP_282461.1| tRNA (uracil-5-)-methyltransferase [Streptococcus pyogenes MGAS5005] gi|71853693|gb|AAZ51716.1| tRNA (uracil-5-)-methyltransferase [Streptococcus pyogenes MGAS5005] gi|290770987|emb|CBK33775.1| 23S rRNA m(5)U 1939 methyltransferase [Streptococcus pyogenes] Length = 451 Score = 276 bits (706), Expect = 4e-72, Method: Composition-based stats. Identities = 80/380 (21%), Positives = 148/380 (38%), Gaps = 40/380 (10%) Query: 10 YEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 YE QL K +++ + I +EP+ YR +A+ + L F Sbjct: 88 YEDQLTFKKKQVQDSLYKIAGISDVTVESTIGMTEPLAYRNKAQVPVRRVNGQLETGFFR 147 Query: 65 QQTKERMRIDYFMPGSLLINAL-----------MIEMMATIRLEPLLRAKLFQIDYLTSQ 113 + + + + I + I+ L I+ LLR + + + + Sbjct: 148 KHSHDLIPISDYYIQDKEIDRLINFTRDLLRRFDIKPYDETEQTGLLRNIVVRRGHYSG- 206 Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD----YVDE 169 + ++ L+ R + ++ +A A IQ I N T +D Y + Sbjct: 207 --EMMLVLVTTRPKVFRVDQVIEKIVEAFPAVVSIIQNINDKN-TNAIFGKDFKTLYGKD 263 Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLA 228 +T + Y SF Q N + + + +A + + D +++ Y G G L A Sbjct: 264 TITDSMLGNNYAISAQSFYQVNTVMAEKLYQTAIAFSDLSKDDIVIDAYSGIGTIGLSFA 323 Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288 + V VE+ + +V A+ N A N + N V +++ ++ Sbjct: 324 KTVKAVYGVEVIEAAVRDAQQNAALNGITNAYFVADTAEHAMATWAKD------------ 371 Query: 289 SYRFKTIFVDPPRSGLDDATVGM--VQAYPHILYISCNPDSLCRDLSILST-THTIERLA 345 + I VDPPR GL ++ + I Y+SCNP ++ RD+ + + ++ Sbjct: 372 GIKPSVILVDPPRKGLTESFIQASVAMGPQKITYVSCNPATMARDIKRYQELGYKLAKVQ 431 Query: 346 LFDQFPYTRHMECGVLLVRK 365 D FP T H+EC VLL+++ Sbjct: 432 PVDLFPQTHHVECVVLLIKE 451 >gi|81429157|ref|YP_396158.1| putative RNA methyltransferase [Lactobacillus sakei subsp. sakei 23K] gi|78610800|emb|CAI55851.1| Putative RNA methyltransferase [Lactobacillus sakei subsp. sakei 23K] Length = 454 Score = 276 bits (706), Expect = 4e-72, Method: Composition-based stats. Identities = 81/378 (21%), Positives = 151/378 (39%), Gaps = 38/378 (10%) Query: 10 YEQQLAEKVDRLRQMMLAFQ---VPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66 Y QL K +++ + + ++P YR +A+ + L + + Sbjct: 93 YPAQLTFKRNQILNVFQKAHLDIPVQPTLGMTDPTGYRNKAQVPVRFIDGALMTGFYRKH 152 Query: 67 TKERMRIDYFMPGSLLINALMIEMMATI-------RLEPLLRAKLFQIDYLTSQ-SDQAI 118 + + M ++ F I+ + + + E + L I S + + Sbjct: 153 SHQVMPMEDFYIQDPKIDEAIKVVRDILRRFYIDPYNEDTHKGVLRTIMVRRGYYSHEMM 212 Query: 119 VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIG-------RANKTKICLDRDYVDERL 171 + I A RE AI ++ AL +Q + ++TK+ RD++ + L Sbjct: 213 IVFITRSKKLPAAREIAIEIKKALPEVVSIMQNVNAAQTNVIFGDQTKLIAGRDFIRDEL 272 Query: 172 TVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARH 230 L + SF Q N + + + A + + +++ Y G G SL +A+H Sbjct: 273 M----GLKFEISAQSFYQVNPVQTEVLYQKAIEAAELTGNETVIDAYSGIGTISLAVAKH 328 Query: 231 FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY 290 +V VE+ + +V AR+N N ++NV+ +++ + Sbjct: 329 AKQVYGVEVVESAVMDARHNAKINAIDNVEFTLGKAEDVMAQWQ------------TDGL 376 Query: 291 RFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STTHTIERLALF 347 + + VDPPR GL+ + + V ++Y+SCNP +L RDL +L + + E Sbjct: 377 QVDALIVDPPRKGLEPSFIEAVGQLKPAKMVYVSCNPATLARDLDLLAAQGYQAEGTQPV 436 Query: 348 DQFPYTRHMECGVLLVRK 365 D FP T H+E LV K Sbjct: 437 DMFPQTLHVESVTKLVLK 454 >gi|332523646|ref|ZP_08399898.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus porcinus str. Jelinkova 176] gi|332314910|gb|EGJ27895.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus porcinus str. Jelinkova 176] Length = 453 Score = 276 bits (706), Expect = 4e-72, Method: Composition-based stats. Identities = 77/384 (20%), Positives = 147/384 (38%), Gaps = 46/384 (11%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 YEQQL K +++ + I +P YR +A+ + L F Sbjct: 88 YEQQLLFKAKQVKDNLYKTAAIKEVELLPTIGMDQPYAYRNKAQIPVRRVNGQLETGFFR 147 Query: 65 QQTKERMRIDYFMPGSLLINAL-----------MIEMMATIRLEPLLRAKLFQIDYLTSQ 113 + + + + I F I+ L + L++ + + + + Sbjct: 148 KNSHDLLPISDFYIQDKEIDKLILFVRDLLRRFQVSPYNEADQSGLIKNLVVRRGHYSG- 206 Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIG-------RANKTKICLDRDY 166 Q ++ I R + + +A +Q + K+ +D+ Sbjct: 207 --QMMLVFITSRPKVFRVEQMVQLITEAFPQVVSIMQNVNDQNGNAIFGKDFKVLYGQDH 264 Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSL 225 + +R+ Y SF Q N + + + + + D+ ++ Y G G L Sbjct: 265 ITDRMLGND----YMVSAQSFYQVNTVMAEKLYQVAIDFSDLNAEDVVIDAYSGIGTIGL 320 Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285 A+ +V VE+ + +V+ AR N N ++N + V S++ + +E Sbjct: 321 SFAKKVKKVYGVEVIEAAVKDARKNAERNGIHNAEFVIGSAEATMEKWSKE--------- 371 Query: 286 DIHSYRFKTIFVDPPRSGLDDATVG--MVQAYPHILYISCNPDSLCRDLSILST-THTIE 342 + I VDPPR GL ++ + A I Y+SCNP ++ RD+ + + ++ Sbjct: 372 ---GIKPSVILVDPPRKGLTESFIKASAAMAPKKITYVSCNPATMARDIKLYQELGYDLK 428 Query: 343 RLALFDQFPYTRHMECGVLLVRKP 366 ++ D FP+T H+EC VLL R Sbjct: 429 KVQPVDLFPHTHHVECVVLLQRSK 452 >gi|325694948|gb|EGD36853.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis SK150] Length = 456 Score = 276 bits (706), Expect = 4e-72, Method: Composition-based stats. Identities = 76/384 (19%), Positives = 154/384 (40%), Gaps = 40/384 (10%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQV-----PNLQIFRSEPIHYRMRAEFHIWHDGDDLY 59 L Y QL K +++ + + +P+ YR +A+ + L Sbjct: 83 LGHLNYPAQLDFKRKQVKDSLYKIAGLSDVEVPPTLGMEQPLGYRNKAQVPVRRVNGQLE 142 Query: 60 HIMFDQQTKERMRIDYFMPGSLLINALMI---EMMATIRLEP--------LLRAKLFQID 108 F + + + + I+ F +I+ +++ +++ L+P L+R + + Sbjct: 143 TGFFRKNSHDLLPIEDFYIQDPVIDQVILFTRDLLRRFDLKPYDEQEKTGLIRNLVVRRG 202 Query: 109 YLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR 164 + + + +VT + L D E ++ + Q ++ + Sbjct: 203 HYSGEIMVILVTTRPKIFRVEQLMDRLTEAFPAIKSIMQNINDQPGNAIFGKDWRMLYGQ 262 Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNF 223 DY+ +++ ++ +F Q N + + + + ++ D+ L+ Y G G Sbjct: 263 DYITDQMLGND----FQIAAPAFYQVNTEMAEKLYQTAIDFSELTTEDVVLDAYSGIGTI 318 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 L +A+ +V VE+ +VE ++ N A N + N V ++E Q +E Sbjct: 319 GLSVAKQVKQVYGVEVIPEAVENSQKNAAINGITNASYVCAPAEEAIQNWLKE------- 371 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGM--VQAYPHILYISCNPDSLCRDLSILST-THT 340 + I VDPPR GL ++ + P I YISCN ++ RD+ + + Sbjct: 372 -----GIQADVILVDPPRKGLTESFIKASVSMEPPKITYISCNVATMARDIKLYQELGYE 426 Query: 341 IERLALFDQFPYTRHMECGVLLVR 364 ++++ D FP T H+E LLVR Sbjct: 427 LKKVQPVDLFPQTHHVEAVSLLVR 450 >gi|317127543|ref|YP_004093825.1| RNA methyltransferase, TrmA family [Bacillus cellulosilyticus DSM 2522] gi|315472491|gb|ADU29094.1| RNA methyltransferase, TrmA family [Bacillus cellulosilyticus DSM 2522] Length = 469 Score = 276 bits (706), Expect = 4e-72, Method: Composition-based stats. Identities = 80/390 (20%), Positives = 154/390 (39%), Gaps = 42/390 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54 L YE QL K D +RQ + NL I EP YR +++ + H Sbjct: 95 GCQLQHLSYEGQLKGKKDIVRQAFERYTKINLDKVDFHDTIGMEEPWKYRNKSQMQVGHH 154 Query: 55 GDDLYHIMFDQQTKERMRIDYFM---PGSLLINALMIEMMATIRLEPL--------LRAK 103 + ++ + + + ++ + P + + ++ ++ A + + P LR Sbjct: 155 QGKVIAGLYSPNSHKLIDLEDCIVQHPQTNKVTNVVKQLAADMNIAPYNERKRTGVLRTI 214 Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD 163 + ++ + T + +VT D + E ++ L +Q I KT + Sbjct: 215 VTRVGFETGEYQVVLVTAKKDIPKVDLFIE---AIKQRLPDVTSIVQNINP-KKTSLVFG 270 Query: 164 RD----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWV-LAATKGIQGDLLELYC 218 + Y E++ + +F Q N + + AA + +++ YC Sbjct: 271 DETIVLYGKEKIEETMSEFRFNLSPRAFFQLNPIQTKKLYDAAKEAAQLTGKEKVVDAYC 330 Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278 G G L LA + +++ K S+E A+ N A+ + N V ++ Sbjct: 331 GVGTIGLWLAAGAKEIRGMDVIKESIEDAKNNAKAHGIKNAHYVSGKAEHL--------- 381 Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILS 336 L + + + + VDPPR+GLD+ + + I+Y+SCNP +L +++ LS Sbjct: 382 ---LPEWEKEGWHPDVVVVDPPRTGLDETFIQTLLRVKPKRIVYVSCNPSTLAKNVDALS 438 Query: 337 -TTHTIERLALFDQFPYTRHMECGVLLVRK 365 + ++ L D FP T +EC + K Sbjct: 439 KGGYKLKALQPVDMFPQTAQVECVARIELK 468 >gi|229551874|ref|ZP_04440599.1| TrmA family tRNA (uracil-5-)-methyltransferase [Lactobacillus rhamnosus LMS2-1] gi|229314818|gb|EEN80791.1| TrmA family tRNA (uracil-5-)-methyltransferase [Lactobacillus rhamnosus LMS2-1] Length = 459 Score = 276 bits (706), Expect = 4e-72, Method: Composition-based stats. Identities = 88/381 (23%), Positives = 157/381 (41%), Gaps = 38/381 (9%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPN---LQIFRSEPIHYRMRAEFHIWHDGDDLYHI 61 L I Y QL K +++++ + I P+ YR +A+ + +L Sbjct: 93 LSILAYPAQLKFKQHQIQELYKKAHLAIKVLPTIGMKHPLGYRNKAQVPVRLVRGELQTG 152 Query: 62 MFDQQTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKLFQIDYL 110 + + + + + I+ F+ I+ ++ + +R ++R + + Sbjct: 153 FYKKHSHDLVPIEDFLIQDPKIDQAIVVVRDLLRKYQVPPYDERTNRGVIRNIMVRRGRA 212 Query: 111 TSQSDQAIVTLIYHRL-LDDAWRECAIRLRDALHAR---KYQIQLIGRANKTKICLDRDY 166 T Q +V + L+D E + L + Q + K+K RDY Sbjct: 213 THQMMLVLVARTWQVPHLNDIVEEITLALPEVTSVVVNLNDQRTNVILGRKSKTIYGRDY 272 Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSL 225 + ++L + ++ SF Q N + + A + +++ Y G G SL Sbjct: 273 LLDKLLGSE----FQISPVSFYQVNPIQTEVLYTKAIEAAGLTGKETVIDAYSGIGTISL 328 Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285 +ARH +V VE+ + +V A+ N A NH+ NV +++ Q + KD Sbjct: 329 TMARHAKQVYGVEVVESAVRDAKANAARNHIKNVTFEVGKAEDVMQ---------KWKDA 379 Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST-THTIE 342 D+ + VDPPR GLD + V P ++YISCNP +L RDL +L+ +T + Sbjct: 380 DLP---VDVLMVDPPRKGLDKTFIDAVGYMKPPKMVYISCNPATLARDLQLLTAFGYTAK 436 Query: 343 RLALFDQFPYTRHMECGVLLV 363 D FP T+H+E L Sbjct: 437 ETQPVDMFPQTQHIESITALT 457 >gi|254992434|ref|ZP_05274624.1| hypothetical protein LmonocytoFSL_04674 [Listeria monocytogenes FSL J2-064] Length = 459 Score = 276 bits (706), Expect = 4e-72, Method: Composition-based stats. Identities = 81/390 (20%), Positives = 143/390 (36%), Gaps = 40/390 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL-------QIFRSEPIHYRMRAEFHIWHD 54 L Y QL K D + Q + + I +P YR +++F Sbjct: 84 GCQLQHVAYSAQLELKRDIVIQSIEKHTKIDPAKLKIRPTIGMEDPWRYRNKSQFQTRMV 143 Query: 55 GDDLYH-IMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRA 102 G +F + + + I+ + L+ + + ++R Sbjct: 144 GSGQVETGLFGANSHQLVPIEDCIVQQPVTIKVTNFVRDLLEKYGVPIYDEKAGSGIVRT 203 Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162 + + T ++ +V + + L RE + AL +Q + +A + I Sbjct: 204 IVVRTGVKTGETQ--LVFIANSKKL-PKKREMLAEIEAALPEVTSIMQNVNQAKSSLIFG 260 Query: 163 DRDYV---DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYC 218 D ++ E + L + +F Q N + + V A + L++ YC Sbjct: 261 DETFLLAGKESIEEKLMELEFDLSARAFFQLNPFQTERLYQEVEKALVLTGSETLVDAYC 320 Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278 G G A V ++I S+E A+ N N + NV +++ E Sbjct: 321 GVGTIGQAFAGKVKEVRGMDIIPESIEDAKRNAEKNGIENVYYEVGKAEDVLPKWVNE-- 378 Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILS 336 +R + VDPPRSG D + + ++Y+SCNP +L RDL++L+ Sbjct: 379 ----------GFRPDAVIVDPPRSGCDQGLIKSLLDVEAKQLVYVSCNPSTLARDLALLA 428 Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVRKP 366 + I + D FP T H+E VLL K Sbjct: 429 KKYRIRYMQPVDMFPQTAHVETVVLLQLKD 458 >gi|290770981|emb|CBK33770.1| 23S rRNA m(5)U 1939 methyltransferase [Streptococcus pyogenes] Length = 451 Score = 276 bits (706), Expect = 4e-72, Method: Composition-based stats. Identities = 80/379 (21%), Positives = 146/379 (38%), Gaps = 40/379 (10%) Query: 10 YEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 YE QL K +++ + I +EP+ YR +A+ + L F Sbjct: 88 YEDQLTFKKKQVQDSLYKIAGISDVTVESTIGMTEPLAYRNKAQVPVRRVNGQLETGFFR 147 Query: 65 QQTKERMRIDYFMPGSLLINAL-----------MIEMMATIRLEPLLRAKLFQIDYLTSQ 113 + + + + I + I+ L I+ LLR + + + + Sbjct: 148 KHSHDLIPISDYYIQDKEIDRLINFTRDLLRRFDIKPYDETEQTGLLRNIVVRRGHYSG- 206 Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD----YVDE 169 + ++ L+ R + ++ +A A IQ I N T +D Y + Sbjct: 207 --EMMLVLVTTRPKVFRVDQVIEKIVEAFPAVVSIIQNINDKN-TNAIFGKDFKTLYGKD 263 Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLA 228 +T + Y SF Q N + + + +A + + D +++ Y G G L A Sbjct: 264 TITDSMLGNNYAISAQSFYQVNTVMAEKLYQTAIAFSDLSKDDIVIDAYSGIGTIGLSFA 323 Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288 + V VE+ + +V A+ N A N + N V +++ ++ Sbjct: 324 KTVKAVYGVEVIEAAVRDAQQNAALNGITNAYFVADTAEHAMATWAKD------------ 371 Query: 289 SYRFKTIFVDPPRSGLDDATVGM--VQAYPHILYISCNPDSLCRDLSILST-THTIERLA 345 + I VDPPR GL ++ + I Y+SCNP ++ RD+ + + ++ Sbjct: 372 GIKPSVILVDPPRKGLTESFIQASVAMGPQKITYVSCNPATMARDIKRYQELGYKLAKVQ 431 Query: 346 LFDQFPYTRHMECGVLLVR 364 D FP T H+EC LLV+ Sbjct: 432 PVDLFPQTHHVECVALLVK 450 >gi|294497204|ref|YP_003560904.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus megaterium QM B1551] gi|294347141|gb|ADE67470.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus megaterium QM B1551] Length = 461 Score = 276 bits (706), Expect = 4e-72, Method: Composition-based stats. Identities = 80/391 (20%), Positives = 150/391 (38%), Gaps = 43/391 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAF-------QVPNLQIFRSEPIHYRMRAEFHIWHD 54 L YE QL K D + Q + I +P YR +++F + D Sbjct: 88 GCQLQHLSYEGQLESKRDIVLQAFERHSSLKKVEEKTRQTIGMEDPWGYRNKSQFQVGVD 147 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPG-------SLLINALMIEMMATIRLEPLLRAKLFQI 107 + ++ + + I+ + I ++ ++ I E R + I Sbjct: 148 KQKVIAGLYGLNSHRLIDIENCPIQHGATNHVTKEIKRILQDLQIPIYNERKRRGIVRTI 207 Query: 108 DYLTS-QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY 166 ++ + + LI + ++ L K +Q + KT + Sbjct: 208 VSRVGFETGEVQIVLITAKQEIPKKELLIKEIQRRLPEVKSLVQNVN-GQKTSLIFG--- 263 Query: 167 VDERLTVAGRTLI--------YRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELY 217 DE T+AG+++I + +F Q N V + + V AA +++ Y Sbjct: 264 -DETFTLAGKSVIQETLGDISFELSARAFFQLNPLQTVKLYDEVKKAAALTGNEKIVDAY 322 Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277 CG G L LA+ + ++ + S+ AR N + + V ++++ +E Sbjct: 323 CGVGTIGLWLAKDAKEIRGMDTIEESIVDARKNAKDHGFEHATYVTGPAEKWMPKWVKE- 381 Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSIL 335 ++ I VDPPR+G DD + + ++Y+SCNP +L +D+ L Sbjct: 382 -----------GWKPDLIVVDPPRTGCDDKLLKTILQVKSKKVVYVSCNPSTLAKDVQQL 430 Query: 336 STTHTIERLALFDQFPYTRHMECGVLLVRKP 366 S + ++ + D FP+T H+E V L K Sbjct: 431 SKAYHVDYIQPVDMFPHTAHVENVVSLTLKK 461 >gi|160935446|ref|ZP_02082828.1| hypothetical protein CLOBOL_00341 [Clostridium bolteae ATCC BAA-613] gi|158441804|gb|EDP19504.1| hypothetical protein CLOBOL_00341 [Clostridium bolteae ATCC BAA-613] Length = 553 Score = 276 bits (706), Expect = 4e-72, Method: Composition-based stats. Identities = 75/386 (19%), Positives = 141/386 (36%), Gaps = 42/386 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH- 60 LL +Y +QLA K + +++ I +P HYR + D Sbjct: 184 GCQLLDMEYAKQLAFKQKQAEELLKGLCPVKPIIGMKDPFHYRNKVHAVFDRDKKGNIIS 243 Query: 61 IMFDQQTKERMRIDYFMPGSLLINAL-----------MIEMMATIRLEPLLRAKLFQIDY 109 ++++ T + ++ + + + + I LLR L + + Sbjct: 244 GIYEENTHHVIPVEKCLIENQKADEIIGTIRGMLKSFKIRTYDEDTGFGLLRHVLIRKGF 303 Query: 110 LTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGR-------ANKTKICL 162 T + +VT + + LR+ +Q I +K + Sbjct: 304 STGEIMVVLVTA---SPVFPSKNNFVKALREKHPEITTIVQNINGRGTSMVLGDKEHVLY 360 Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNG 221 + Y+ + L +R SF Q N + E L+ + +++ YCG G Sbjct: 361 GKGYIVDELC----GCRFRISSKSFYQVNPVQTEILYEKALSLAGLTGQELVVDAYCGIG 416 Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281 ++ ++ +V+ VE+ + +V A N N + N++ + F M Sbjct: 417 TIGIIASKAAGKVIGVELNQDAVRDAVNNAKMNGIENIRFYCNDAGRFLVNMAE------ 470 Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST-T 338 + + +DPPRSG + + V ++Y+SCNP++L RD+ + Sbjct: 471 ------QGEKADVVIMDPPRSGSTEEFMDAVGKLGAEKVVYVSCNPETLARDVRYMKKMG 524 Query: 339 HTIERLALFDQFPYTRHMECGVLLVR 364 + L D FP T H E VLL + Sbjct: 525 YRAAEAWLVDMFPGTVHTESIVLLQK 550 >gi|323448927|gb|EGB04820.1| hypothetical protein AURANDRAFT_12344 [Aureococcus anophagefferens] Length = 343 Score = 276 bits (706), Expect = 4e-72, Method: Composition-based stats. Identities = 134/347 (38%), Positives = 204/347 (58%), Gaps = 16/347 (4%) Query: 31 PNLQIFRSEPIHYRMRAEFHIWHDG------DDLYHIMFDQQTKERMRID--YFMPGSLL 82 P ++F SE +RMRA F +W +G + +M+++ + R ++ F GS Sbjct: 1 PAAEVFESERSGFRMRASFQVWREGSLDHGNQTRHLVMYERGDEARNPVECLDFPMGSDR 60 Query: 83 INALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDAL 142 + +L+ + A ++ E L K+ LT+ + A+++L Y+R L + A A Sbjct: 61 LRSLLPPLTAALQGE-TLGYKINDARLLTTLAGDALLSLTYNRPLA---GDDAWDAAAAD 116 Query: 143 HARKYQIQLIGRANKTKICLDRDYVDERLTVAGR-TLIYRQIENSFTQPNAGINVHMLEW 201 A + ++++GR+ K K + D V E L V GR T Y Q E +FTQPNA + ML W Sbjct: 117 FAAAHDVKVVGRSRKYKTAVGADEVREVLDVPGRGTCAYWQTEGAFTQPNANVCRSMLGW 176 Query: 202 VLAATKGI-QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK 260 +AAT GDL ELYCGNG F++ LA +F RV+A E++K SV AR N+AAN +N + Sbjct: 177 AVAATANRGHGDLCELYCGNGCFTVALAPNFRRVVATELSKASVALARRNLAANGNDNAR 236 Query: 261 IVRMSSKEFTQAMRREREFNRLKDID--IHSYRFKTIFVDPPRSGLDDATVGMVQAYPHI 318 + ++S++EF +A R F RL D + T+FVDPPR+GLD V + + + + Sbjct: 237 VAKLSAEEFVEAFDGARTFGRLLDAGETLAFDALDTLFVDPPRAGLDATCVELARRFATV 296 Query: 319 LYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 +Y+SCNP++L RD+++L+ TH + RLA FDQFPYT H+E GV+L RK Sbjct: 297 VYVSCNPETLARDVALLAATHDVSRLAAFDQFPYTHHLEAGVVLERK 343 >gi|258539292|ref|YP_003173791.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus rhamnosus Lc 705] gi|257150968|emb|CAR89940.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus rhamnosus Lc 705] Length = 453 Score = 276 bits (706), Expect = 4e-72, Method: Composition-based stats. Identities = 88/381 (23%), Positives = 157/381 (41%), Gaps = 38/381 (9%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPN---LQIFRSEPIHYRMRAEFHIWHDGDDLYHI 61 L I Y QL K +++++ + I P+ YR +A+ + +L Sbjct: 87 LSILAYPAQLKFKQHQIQELYKKAHLAIKVLPTIGMKHPLGYRNKAQVPVRLVRGELQTG 146 Query: 62 MFDQQTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKLFQIDYL 110 + + + + + I+ F+ I+ ++ + +R ++R + + Sbjct: 147 FYKKHSHDLVPIEDFLIQDPKIDQAIVVVRDLLRKYQVPPYDERTNRGVIRNIMVRRGRA 206 Query: 111 TSQSDQAIVTLIYHRL-LDDAWRECAIRLRDALHAR---KYQIQLIGRANKTKICLDRDY 166 T Q +V + L+D E + L + Q + K+K RDY Sbjct: 207 THQMMLVLVARTWQVPHLNDIVEEITLALPEVTSVVVNLNDQRTNVILGRKSKTIYGRDY 266 Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSL 225 + ++L + ++ SF Q N + + A + +++ Y G G SL Sbjct: 267 LLDKLLGSE----FQISPVSFYQVNPIQTEVLYTKAIEAAGLTGKETVIDAYSGIGTISL 322 Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285 +ARH +V VE+ + +V A+ N A NH+ NV +++ Q + KD Sbjct: 323 TMARHAKQVYGVEVVESAVRDAKANAARNHIKNVTFEVGKAEDVMQ---------KWKDA 373 Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST-THTIE 342 D+ + VDPPR GLD + V P ++YISCNP +L RDL +L+ +T + Sbjct: 374 DLP---VDVLMVDPPRKGLDKTFIDAVGYMKPPKMVYISCNPATLARDLQLLTAFGYTAK 430 Query: 343 RLALFDQFPYTRHMECGVLLV 363 D FP T+H+E L Sbjct: 431 ETQPVDMFPQTQHIESITALT 451 >gi|306827133|ref|ZP_07460425.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus pyogenes ATCC 10782] gi|304430686|gb|EFM33703.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus pyogenes ATCC 10782] Length = 462 Score = 276 bits (706), Expect = 4e-72, Method: Composition-based stats. Identities = 80/380 (21%), Positives = 149/380 (39%), Gaps = 40/380 (10%) Query: 10 YEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 YE QL K +++ + I +EP+ YR +A+ + L F Sbjct: 99 YEDQLTFKKKQVQDSLYKIAGISDVTVESTIGMTEPLAYRNKAQVPVRRVNGQLETGFFR 158 Query: 65 QQTKERMRIDYFMPGSLLINAL-----------MIEMMATIRLEPLLRAKLFQIDYLTSQ 113 + + + + I + I+ L I+ LLR + + + + Sbjct: 159 KHSHDLIPISDYYIQDKEIDRLINFTRDLLRRFDIKPYDETEQTGLLRNIVVRRGHYSG- 217 Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD----YVDE 169 + ++ L+ R + ++ +A A IQ I N T +D Y + Sbjct: 218 --EMMLVLVTTRPKVFRVDQVIEKIVEAFPAVVSIIQNINDKN-TNAIFGKDFKTLYGKD 274 Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLA 228 +T + Y SF Q N + + + +A + + D +++ Y G G L A Sbjct: 275 TITDSMLGNNYAISAQSFYQVNTVMAEKLYQTAIAFSDLSKDDIVIDAYSGIGTIGLSFA 334 Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288 + V VE+ + +V A++N A N + N V +++ ++ Sbjct: 335 KTVKAVYGVEVIEAAVRDAQHNAALNGITNAYFVADTAEHAMATWAKD------------ 382 Query: 289 SYRFKTIFVDPPRSGLDDATVGM--VQAYPHILYISCNPDSLCRDLSILST-THTIERLA 345 + I VDPPR GL ++ + I Y+SCNP ++ RD+ + + ++ Sbjct: 383 GIKPSVILVDPPRKGLTESFIQASVAMGPQKITYVSCNPATMARDIKRYQELGYKLAKVQ 442 Query: 346 LFDQFPYTRHMECGVLLVRK 365 D FP T H+EC VLL+++ Sbjct: 443 PVDLFPQTHHVECVVLLIKE 462 >gi|222153321|ref|YP_002562498.1| RNA methyltransferase [Streptococcus uberis 0140J] gi|222114134|emb|CAR42611.1| putative RNA methyltransferase [Streptococcus uberis 0140J] Length = 453 Score = 276 bits (706), Expect = 4e-72, Method: Composition-based stats. Identities = 78/379 (20%), Positives = 145/379 (38%), Gaps = 40/379 (10%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 Y+QQL K +++ + N I EP YR +A+ + L F Sbjct: 88 YDQQLLFKAKQVKDNLYKTAGINSVEVLPTIGMEEPYAYRNKAQVPVRRVNGQLETGFFR 147 Query: 65 QQTKERMRIDYFMPGSLLINAL-----------MIEMMATIRLEPLLRAKLFQIDYLTSQ 113 + + + + I F I+ L + L++ + + + + Q Sbjct: 148 KNSHDLLPISDFYIQDKEIDKLILFVRDLLRRYEVSPYDEKEKTGLIKNLVVRRGHYSGQ 207 Query: 114 SDQAIVTLIYHRLLDDAWRECAI----RLRDALHARKYQIQLIGRANKTKICLDRDYVDE 169 VT D E ++ + Q K+ +DY+ + Sbjct: 208 MMLVFVTSRPKVFRVDQMVEKITEAFPQVVSIMQNINDQNGNAIFGRDFKVLYGQDYIMD 267 Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLA 228 + YR SF Q N + + + + ++ + D+ ++ Y G G L A Sbjct: 268 SMLGND----YRISAQSFYQVNTLMAEKLYQTAIDFSELSKDDVVIDAYSGIGTIGLSFA 323 Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288 ++ +V VE+ + +V+ A+ N N + N V S++ + +E Sbjct: 324 KNVKKVYGVEVIEAAVKDAQKNAERNGIRNATYVVDSAESAMEKWTKE------------ 371 Query: 289 SYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILST-THTIERLA 345 + I VDPPR GL ++ + A I Y+SCNP ++ RD+ + ++++ Sbjct: 372 GIKPSVILVDPPRKGLTESFIEASVAMKPQKITYVSCNPATMARDIKRYQELGYDLKKVQ 431 Query: 346 LFDQFPYTRHMECGVLLVR 364 D FP+T H+EC VL+ R Sbjct: 432 PVDLFPHTHHVECVVLMSR 450 >gi|319744421|gb|EFV96779.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus agalactiae ATCC 13813] Length = 452 Score = 276 bits (705), Expect = 5e-72, Method: Composition-based stats. Identities = 85/388 (21%), Positives = 154/388 (39%), Gaps = 42/388 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54 ++ QY++QL K D +RQ ++ F+ + I SEP HYR + +F + Sbjct: 81 GCQIMHLQYDKQLEFKTDIIRQALMKFKPEGYENYEIRKTIGMSEPEHYRAKLQFQVRSF 140 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMI---EMMATIRLEPLLRAKLFQIDYLT 111 G ++ ++ Q T + I + L ++ E++ +L K+ + + Sbjct: 141 GGNVKAGLYAQGTHRLIDIKDCLVQDSLTQEMINRVAELLGKYKLPIYNERKIAGVRTVM 200 Query: 112 SQ----SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANK-------TKI 160 + S + + I + LD + + I L K I + T++ Sbjct: 201 IRRAQASGEVQLIFITSKRLD--FDDVVIELVREFPELKTVAVNINASKTSDIYGQITEV 258 Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCG 219 ++ ++E + G +L +F Q N + E V A DL++ YCG Sbjct: 259 IWGQESINEEVLDYGFSL----SPRAFYQLNPKQTQILYSEAVKALDVKEDDDLIDAYCG 314 Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279 G L A V ++I +++ A+ N N +++ E Sbjct: 315 VGTIGLAFAGKVKSVRGMDIIPEAIQDAKENALHMGFTNTHYEAGKAEDIIPRWYSE--- 371 Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILST 337 +R + VDPPR+GLDD + + P ++Y+SCN +L RDL L+ Sbjct: 372 ---------GFRANALIVDPPRTGLDDKLLNTILKMPPEKMVYVSCNTSTLARDLVTLTK 422 Query: 338 THTIERLALFDQFPYTRHMECGVLLVRK 365 + + + D FP+T E V L +K Sbjct: 423 VYHVHYIQSVDMFPHTARTEAVVKLQKK 450 >gi|295104063|emb|CBL01607.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Faecalibacterium prausnitzii SL3/3] Length = 476 Score = 276 bits (705), Expect = 5e-72, Method: Composition-based stats. Identities = 79/387 (20%), Positives = 146/387 (37%), Gaps = 40/387 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHD-GDDLYH 60 LL Y +QL +K +++R ++ + + +P HYR + G L Sbjct: 12 GCPLLGLDYAEQLKQKEEKVRALVGKYGPVHPIRGMEQPYHYRNKVISTFATGWGGKLTS 71 Query: 61 IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKLFQIDY 109 ++ + + + ++ + +++ M + A LLR L + Sbjct: 72 GIYAANSHKVLPVESCLLQDEVLDKTMQAVRAAANACRYQSYDEDKGTGLLRHCLLRRGV 131 Query: 110 LTSQSDQAIVTL--------IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161 T Q +VT + + L + + + + + + K+ Sbjct: 132 ATGQVMVVLVTAQPVLPGAKNFVKALLTEAAQRGVTVTTVVQNVNSRKTSVVLGEAEKVL 191 Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGN 220 + ++ + L Y SF Q N + + A K ++ L+ YCG Sbjct: 192 YGKGFILDTLCGK----TYAISPRSFYQVNPAQTAVLYGLAVEAAKLTGKEVVLDAYCGI 247 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G L A H +V+ VE+ + +V+ A N N V N + + Sbjct: 248 GTIGLTAADHAKQVVGVELNRDAVQDAIGNARHNGVKNARFFAADAT------------R 295 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST- 337 +++ + IF+DPPR G + V A ++Y+SCNP +L RDL+ L+ Sbjct: 296 WIREAAAAGEKADVIFMDPPREGSTPEFLASVARMAPKRVVYVSCNPVTLARDLATLTKL 355 Query: 338 THTIERLALFDQFPYTRHMECGVLLVR 364 + E D FP+T H+E VLL + Sbjct: 356 GYKAEGFTPVDMFPHTEHVETVVLLSK 382 >gi|227892264|ref|ZP_04010069.1| tRNA (uracil-5-) -methyltransferase [Lactobacillus salivarius ATCC 11741] gi|227865905|gb|EEJ73326.1| tRNA (uracil-5-) -methyltransferase [Lactobacillus salivarius ATCC 11741] Length = 456 Score = 276 bits (705), Expect = 5e-72, Method: Composition-based stats. Identities = 73/379 (19%), Positives = 154/379 (40%), Gaps = 40/379 (10%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 Y QL K + ++ + NL++ P +YR +A+ + L F Sbjct: 92 SYPAQLKFKRKLVTDLLQKVHLDNLEVANTLGMETPYYYRNKAQVPVREVNGKLEIGFFK 151 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-----------LRAKLFQIDYLTSQ 113 + + + +++F+ I+ ++I++ +R+ + +R L + Y + + Sbjct: 152 RNSHNFVAMEHFLIQDKRIDEILIKVRDILRMSKITAYNEEKHTGMIRHILVRRGYYSHE 211 Query: 114 SDQAIVTLIYHRLLDDAW----RECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDE 169 + +V+ + D ++ ++ + + KT +D + + Sbjct: 212 AMVVLVSRVRKIPNLDQIAFLIQQQCPDVKSVMLNVNPDKTNVILGKKTIKLAGKDTIQD 271 Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNFSLVLA 228 L L + SF Q N + + + A + +++ YCG G SL +A Sbjct: 272 TL----NGLKFDISAQSFYQVNPQQTEKLYQLAIENAELTGKETVIDAYCGIGTISLNMA 327 Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288 + +V VEI ++E A++N + N ++N+ ++ + + ++ Sbjct: 328 KFAKKVYGVEIVPEAIEDAKHNASLNDLDNLDFEVGEAEVWMEKWQK------------Q 375 Query: 289 SYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLS-ILSTTHTIER-L 344 + I VDPPR GL + + A I+Y+SCNP +L RD+ + + + + + Sbjct: 376 GIKPDVIMVDPPRKGLTSSLIQSAVAMEPKKIVYVSCNPATLVRDIQEFMELGYQVTKPI 435 Query: 345 ALFDQFPYTRHMECGVLLV 363 DQFP T H+E +L Sbjct: 436 QPVDQFPQTTHVESVTVLE 454 >gi|325690901|gb|EGD32902.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis SK115] Length = 464 Score = 276 bits (705), Expect = 5e-72, Method: Composition-based stats. Identities = 72/384 (18%), Positives = 153/384 (39%), Gaps = 40/384 (10%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQV-----PNLQIFRSEPIHYRMRAEFHIWHDGDDLY 59 L Y QL K +++ + + +P+ YR +A+ + L Sbjct: 96 LGHLNYPAQLDFKRKQVKDSLYKIAGLSDVEVPPTLGMEQPLGYRNKAQVPVRRVNGQLE 155 Query: 60 HIMFDQQTKERMRIDYFMPGSLLINALMI---EMMATIRLEP--------LLRAKLFQID 108 F + + + + I+ F +I+ +++ +++ L+P L+R + + Sbjct: 156 TGFFRKNSHDLLPIEDFYIQDPVIDQVILFTRDLLRRFDLKPYDEQEKTGLIRNLVVRRG 215 Query: 109 YLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR 164 + + + +VT + L D E ++ + Q + ++ + Sbjct: 216 HYSGEIMVILVTTRPKIFRVEQLIDRLTEAFPAIKTIIQNINDQNTNAIFGKEWRVLYGQ 275 Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNF 223 DY+ +++ ++ +F Q N + + + + + D+ ++ Y G G Sbjct: 276 DYIMDQMLGNN----FQISGPAFYQVNTQMAEKLYQTAIDFADLREDDVVIDAYSGIGTI 331 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 L +A+H V VE+ +VE ++ N N + N V +++ + +E Sbjct: 332 GLSVAKHVKEVYGVEVIPEAVENSQKNATLNGITNAHYVCDTAENAMKTWLKE------- 384 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST-THT 340 + I VDPPR GL ++ + I YISCN ++ RD+ + + Sbjct: 385 -----GIQPTAILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMARDIKLYQELGYE 439 Query: 341 IERLALFDQFPYTRHMECGVLLVR 364 ++++ D FP T H+EC LLV+ Sbjct: 440 LKKVQPVDLFPQTHHVECVALLVK 463 >gi|323127600|gb|ADX24897.1| tRNA (uracil-5-)-methyltransferase [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 543 Score = 276 bits (705), Expect = 5e-72, Method: Composition-based stats. Identities = 78/385 (20%), Positives = 146/385 (37%), Gaps = 40/385 (10%) Query: 10 YEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 YE QL K +++ + N I P+ YR +A+ + L F Sbjct: 88 YEDQLRFKQKQVQDNLYKIAGINDVTVNQTIGMDNPLAYRNKAQVPVRRVNGQLETGFFR 147 Query: 65 QQTKERMRIDYFMPGSLLINAL-----------MIEMMATIRLEPLLRAKLFQIDYLTSQ 113 + + + + I + I+ L ++ L+R + + + + Sbjct: 148 KHSHDLVPISDYYIQDKEIDRLINFTRELLRRFDVKPYDEKEQTGLIRHIVVRRGHYSG- 206 Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD----YVDE 169 + ++ L+ R + ++ +A A IQ I N T +D Y + Sbjct: 207 --EMMLVLVTTRPKVFRVDQVISKIVEAFPAVVSIIQNINDKN-TNAIFGKDFKTLYGKD 263 Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLA 228 +T + + SF Q N + + + +A + + D+ ++ Y G G L A Sbjct: 264 TITDSMLGNDFAISAQSFYQVNTVMAEKLYQTAIAFSDLSEDDVVIDAYSGIGTIGLSFA 323 Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288 + V VE+ + +V+ A+ N A N + NV V +++ +E Sbjct: 324 KTVKAVYGVEVIEAAVKDAQQNAARNGITNVHFVADTAENAMATWAKE------------ 371 Query: 289 SYRFKTIFVDPPRSGLDDATVGM--VQAYPHILYISCNPDSLCRDLSILST-THTIERLA 345 + I VDPPR GL ++ + I Y+SCNP ++ RD+ + + ++ Sbjct: 372 GIKPSVILVDPPRKGLTESFIQASVAMGPQKITYVSCNPATMARDIKRYQDLGYKLTKVQ 431 Query: 346 LFDQFPYTRHMECGVLLVRKPSGWH 370 D FP T H+E LL + H Sbjct: 432 PVDLFPQTHHVETVALLSKLNVDKH 456 >gi|261404859|ref|YP_003241100.1| TrmA family RNA methyltransferase [Paenibacillus sp. Y412MC10] gi|261281322|gb|ACX63293.1| RNA methyltransferase, TrmA family [Paenibacillus sp. Y412MC10] Length = 523 Score = 276 bits (705), Expect = 5e-72, Method: Composition-based stats. Identities = 84/436 (19%), Positives = 142/436 (32%), Gaps = 88/436 (20%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-------------------------------- 29 L Y QL K + + Sbjct: 105 GCQLQHMNYAGQLEWKRQLVVDNLERIGKLRVVRESAIAGETCVDDKRSGTDGGGDIEIS 164 Query: 30 -------------------VPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKER 70 + + SEP YR +++ I L + + + Sbjct: 165 ETNGTNPAVSGVESDQEGILVRPTLGMSEPWRYRNKSQVPIGVTEGGLVGGFYARGSHRI 224 Query: 71 MRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119 + ++ + + L I + LLR + +I + T + +V Sbjct: 225 VDMETCLIQHEQNDEVVSRVKAIGRKLGITAYNEETGQGLLRHVVVKIGFATREMMIVLV 284 Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD----YVDERLTVAG 175 T + W +R L A Q + KT + + E + Sbjct: 285 TNGERIPRVNEW---IAAIRKELPAVVSICQNVNT-RKTNVIFGDVTRVLWGREVIHDYI 340 Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDR 233 + + SF Q N + + G+ G+ +++ YCG G SL LA+H + Sbjct: 341 GDVKFAISARSFYQVNPAQTEVLYGKTVE-YAGLTGEETVIDAYCGIGTISLFLAQHAKK 399 Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293 V VEI K ++E AR N N + +V+ +S++ + Sbjct: 400 VYGVEIVKEAIEDARANAELNGMKHVEFEVGASEDVIPRWKE------------QGIEAD 447 Query: 294 TIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILS-TTHTIERLALFDQF 350 I VDPPR G D + + ++Y+SCNP +L RDL IL + + D F Sbjct: 448 VIVVDPPRKGCDPRLLETILEMKPERVVYVSCNPSTLARDLRILEDGGYRTVEVTPVDMF 507 Query: 351 PYTRHMECGVLLVRKP 366 P+T H+E +LV K Sbjct: 508 PHTVHVESVAVLVWKD 523 >gi|332362548|gb|EGJ40348.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis SK1056] Length = 465 Score = 276 bits (705), Expect = 5e-72, Method: Composition-based stats. Identities = 76/385 (19%), Positives = 156/385 (40%), Gaps = 40/385 (10%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQV-----PNLQIFRSEPIHYRMRAEFHIWHDGDDLY 59 L Y QL K +++ + + +P+ YR +A+ + L Sbjct: 96 LGHLNYSAQLDFKRKQVKDSLYKIAGLSDVEVPPTLGMEQPLGYRNKAQVPVRRVNGQLE 155 Query: 60 HIMFDQQTKERMRIDYFMPGSLLINALMI---EMMATIRLEP--------LLRAKLFQID 108 F + + + + I+ F +I+ +++ +++ L+P L+R + + Sbjct: 156 TGFFRKNSHDLLPIEDFYIQDPVIDQVILFTRDLLRRFDLKPYDEQEKTGLIRNLVVRRG 215 Query: 109 YLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR 164 + + + +VT + L + E ++ + Q + + Sbjct: 216 HYSGEIMLILVTTRPKIFRVEQLMEHLTEAFPAIKSIMQNINDQPGNAIFGKDWRTLYGQ 275 Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNF 223 DY+ +++ ++ +F Q N + + + + ++ D+ L+ Y G G Sbjct: 276 DYITDQMLGHD----FQIAAPAFYQVNTEMAEKLYQTAIDFSELTSDDVVLDAYSGIGTI 331 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 L +A+ +V VE+ +V+ +R N A N + N V ++E Q +E Sbjct: 332 GLSVAKQVKQVYGVEVIPEAVKNSRKNAAINGITNASYVCAPAEEAIQNWLKE------- 384 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGM-VQAYP-HILYISCNPDSLCRDLSILST-THT 340 + I VDPPR GL ++ + V P I YISCN ++ RD+ + + Sbjct: 385 -----GIQADVILVDPPRKGLTESFIKASVSMEPKKITYISCNVATMARDIKLYQELGYE 439 Query: 341 IERLALFDQFPYTRHMECGVLLVRK 365 ++++ D FP T H+EC LLV++ Sbjct: 440 LKKVQPVDLFPQTHHVECVNLLVKR 464 >gi|332652524|ref|ZP_08418269.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Ruminococcaceae bacterium D16] gi|332517670|gb|EGJ47273.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Ruminococcaceae bacterium D16] Length = 452 Score = 276 bits (705), Expect = 5e-72, Method: Composition-based stats. Identities = 89/386 (23%), Positives = 151/386 (39%), Gaps = 39/386 (10%) Query: 2 SGTLL-IDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWHDGD 56 G YE++L K DR+ + +L++ +P+ YR + + + Sbjct: 81 GGCQYRHMTYEEELTAKWDRVNDALRRLGGLDLELPPVLGAEDPLRYRNKVQLPVAQGKQ 140 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRL-------EPLLRAKLFQIDY 109 L F ++ + + + L + L A + E + + + Sbjct: 141 GLSIGYFRPRSHDVLDVKDCPLQPLAVTRLREAFKAWMEQWSVPAYDESTCQGLIRHLYV 200 Query: 110 LTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC-------L 162 T+Q+ Q++ ++ + E LR A + I +A+ I Sbjct: 201 RTNQAGQSLCCVVANGKKLPQVSELVEALRKAEPGLIGLVLNINQADTNVILGPEYRTLW 260 Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNG 221 +D+++E L + +R SF Q N + + A Q +L+LYCG G Sbjct: 261 GQDFLEETLC----GMTFRLSVPSFFQINWAQTQRLYAQAVDFAALTGQETVLDLYCGIG 316 Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281 SL LA+ RV+ EI ++E A+ N A N V N + + + RE Sbjct: 317 TISLALAQKAGRVIGAEIVPQAIEDAKANAARNKVENTRFFCGDAGAVAAQLARE----- 371 Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST-T 338 R + I VDPPR GL ++ A I+Y+SC+P +L RD L Sbjct: 372 -------GVRPQVICVDPPRKGLAPEVPAILASMAPERIVYVSCDPATLARDAKRLEELG 424 Query: 339 HTIERLALFDQFPYTRHMECGVLLVR 364 + ++ D FP T H+E +LLVR Sbjct: 425 YRAIKVQAVDLFPRTAHVETVLLLVR 450 >gi|116873139|ref|YP_849920.1| RNA methyltransferase [Listeria welshimeri serovar 6b str. SLCC5334] gi|116742017|emb|CAK21141.1| RNA methyltransferase [Listeria welshimeri serovar 6b str. SLCC5334] Length = 458 Score = 276 bits (705), Expect = 5e-72, Method: Composition-based stats. Identities = 81/390 (20%), Positives = 142/390 (36%), Gaps = 40/390 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL-------QIFRSEPIHYRMRAEFHIWHD 54 L Y QL K D + Q + + I +P YR +++F Sbjct: 84 GCQLQHVAYSAQLELKRDIVIQSIEKHTKIDPAKLKIRPTIGMEDPWRYRNKSQFQTRLV 143 Query: 55 GDDLYH-IMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRA 102 G +F + + + I+ + L+ + + ++R Sbjct: 144 GSGQVETGLFGANSHQLVPIEDCIVQQPVTIKVTNFVRDLLEKYGVPIYDEKAGSGIVRT 203 Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162 + + T ++ +T + L RE + AL +Q + +A + I Sbjct: 204 IVVRTGVKTGETQLVFITN--SKKL-PKKREMLAEIEAALPEVTSIMQNVNQAKSSLIFG 260 Query: 163 DRDYV---DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYC 218 D ++ E + L + +F Q N + + V A + L++ YC Sbjct: 261 DETFLLAGKESIEEKLMELEFDLSARAFFQLNPFQTERLYQEVEKALVLTGSETLVDAYC 320 Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278 G G A V ++I S+E A+ N N + NV +++ Sbjct: 321 GVGTIGQAFAGKVKEVRGMDIIPESIEDAKRNAEKNGIENVYYEVGKAEDV--------- 371 Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILS 336 L +R + VDPPRSG D + + ++Y+SCNP +L RDL++L+ Sbjct: 372 ---LPKWVNDGFRPDAVIVDPPRSGCDQGLIKSLLEVEAKQLVYVSCNPSTLARDLALLA 428 Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVRKP 366 + I + D FP T H+E VLL K Sbjct: 429 KKYRIRYMQPVDMFPQTAHVETVVLLQLKN 458 >gi|199597359|ref|ZP_03210790.1| tRNA (uracil-5-)-methyltransferase related enzyme [Lactobacillus rhamnosus HN001] gi|199591875|gb|EDY99950.1| tRNA (uracil-5-)-methyltransferase related enzyme [Lactobacillus rhamnosus HN001] Length = 458 Score = 276 bits (705), Expect = 6e-72, Method: Composition-based stats. Identities = 87/381 (22%), Positives = 157/381 (41%), Gaps = 38/381 (9%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPN---LQIFRSEPIHYRMRAEFHIWHDGDDLYHI 61 L I Y QL K +++++ + I P+ YR +A+ + +L Sbjct: 90 LSILAYPAQLKFKQHQIQELYKKAHLAIKVLPTIGMKHPLGYRNKAQVPVRLVHGELQTG 149 Query: 62 MFDQQTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKLFQIDYL 110 + + + + + I+ F+ I+ ++ + +R ++R + + Sbjct: 150 FYKKHSHDLVPIEDFLIQDPKIDQAIVVVRDLLRKYQVPPYDERTNRGVIRNIMVRRGRA 209 Query: 111 TSQSDQAIVTLIYHRL-LDDAWRECAIRLRDALHAR---KYQIQLIGRANKTKICLDRDY 166 T Q +V + L+D + L + + + K+K RDY Sbjct: 210 TQQMMIVLVARTWQVPHLNDIVEGITLALPEVTSVVVNLNDKRTNVILGRKSKTIYGRDY 269 Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSL 225 + ++L + ++ SF Q N + + A + +++ Y G G SL Sbjct: 270 LLDKLLGSE----FQISPVSFYQVNPIQTEVLYTKAIEAAALTGKETVIDAYSGIGTISL 325 Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285 +ARH +V VE+ + +V A+ N A NH+ NV +++ Q + KD Sbjct: 326 TMARHAKQVYGVEVVESAVRDAKANAARNHIKNVTFEVGKAEDVMQ---------KWKDA 376 Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST-THTIE 342 D+ + VDPPR GLD + V P ++YISCNP +L RDL +L+ +T + Sbjct: 377 DLP---VDVLMVDPPRKGLDKTFIDAVGYMKPPKMVYISCNPATLARDLQLLAAFGYTAK 433 Query: 343 RLALFDQFPYTRHMECGVLLV 363 D FP T+H+E LL Sbjct: 434 ETQPVDMFPQTQHIESVTLLE 454 >gi|22536596|ref|NP_687447.1| RNA methyltransferase [Streptococcus agalactiae 2603V/R] gi|77411313|ref|ZP_00787662.1| RNA methyltransferase, TrmA family [Streptococcus agalactiae CJB111] gi|50401577|sp|Q8E1E4|Y413_STRA5 RecName: Full=Uncharacterized RNA methyltransferase SAG0413 gi|22533432|gb|AAM99319.1|AE014210_9 RNA methyltransferase, TrmA family [Streptococcus agalactiae 2603V/R] gi|77162649|gb|EAO73611.1| RNA methyltransferase, TrmA family [Streptococcus agalactiae CJB111] Length = 451 Score = 275 bits (704), Expect = 6e-72, Method: Composition-based stats. Identities = 86/388 (22%), Positives = 154/388 (39%), Gaps = 42/388 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54 ++ QY++QL K D +RQ ++ F+ + I SEP HYR + +F + Sbjct: 81 GCQIMHLQYDKQLEFKTDVIRQALMKFKPEGYENYEIRKTIGMSEPEHYRAKLQFQVRSF 140 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMI---EMMATIRLEPLLRAKLFQIDYLT 111 G ++ ++ Q T + I + L ++ E++ +L K+ + + Sbjct: 141 GGNVKAGLYAQGTHRLIDIKDCLVQDSLTQEMINRVAELLGKYKLPIYNERKIAGVRTVM 200 Query: 112 SQ----SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANK-------TKI 160 + S + + I + LD + + I L K I + T++ Sbjct: 201 IRRAQASGEVQLIFITSKRLD--FDDVVIELVREFPELKTVAVNINASKTSDIYGQITEV 258 Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCG 219 ++ ++E + G +L +F Q N + E V A DL++ YCG Sbjct: 259 IWGQESINEEVLDYGFSL----SPRAFYQLNPKQTQILYSEAVKALDVKEDDDLIDAYCG 314 Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279 G L A V ++I +++ A+ N N +++ E Sbjct: 315 VGTIGLAFAGKVKSVRGMDIIPEAIQDAKENALYMGFTNTHYEAGKAEDIIPRWYSE--- 371 Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILST 337 +R + VDPPR+GLDD + + P ++Y+SCN +L RDL L+ Sbjct: 372 ---------GFRANALIVDPPRTGLDDKLLNTILKMPPEKMVYVSCNTSTLARDLVTLTK 422 Query: 338 THTIERLALFDQFPYTRHMECGVLLVRK 365 + + + D FP+T E V L RK Sbjct: 423 VYHVHYIQSVDMFPHTARTEAVVKLQRK 450 >gi|322517378|ref|ZP_08070253.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus vestibularis ATCC 49124] gi|322124075|gb|EFX95628.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus vestibularis ATCC 49124] Length = 451 Score = 275 bits (704), Expect = 6e-72, Method: Composition-based stats. Identities = 84/386 (21%), Positives = 151/386 (39%), Gaps = 38/386 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54 L+ +Y++QL K D L Q + F+ N + I +P HYR + +F Sbjct: 81 GCQLMHLRYDKQLEFKTDLLGQALKKFKPANFESYEIRQTIGMEQPQHYRAKLQFQTRSF 140 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIE---MMATIRLEPLLRAKLFQIDYLT 111 G + +F + + + ID + L A+M + ++ +L K+ I + Sbjct: 141 GGSVKAGLFAEGSHRLINIDDCLVQDELTQAMMNKVTSLLDKYKLPIYNERKISGIRTVM 200 Query: 112 SQ----SDQAIVTLIYHRL--LDDAWRECAIRLRDALH---ARKYQIQLIGRANKTKICL 162 + S+Q + + + L +E +R + + Y +T+I Sbjct: 201 IRRALGSNQVQLIFVTSKSVSLTKLVKELTLRYPEIVTVAINYNYSKSSEIYGQETEIIW 260 Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNG 221 +D + E + L +F Q N + + A L++ YCG G Sbjct: 261 GQDTIQEEVLDYNFAL----SPRAFYQLNPKQTEVLYSQAVEALEVDKDEHLIDAYCGVG 316 Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281 L A + ++I ++E AR N + + N +++ +E Sbjct: 317 TIGLAFANKVKSIRGMDIIPEAIEDARKNAKSLGLGNTHYEVGKAEDIIPRWYKE----- 371 Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTTH 339 YR + VDPPR+GLDD + + Y ++Y+SCN +L RDL L+ + Sbjct: 372 -------GYRADALIVDPPRTGLDDKLLKTILDYTPEKMVYVSCNVSTLARDLVSLAKVY 424 Query: 340 TIERLALFDQFPYTRHMECGVLLVRK 365 + + D FP+T E V L +K Sbjct: 425 DVNYIQSVDMFPHTARTEAVVKLTKK 450 >gi|288871274|ref|ZP_06117059.2| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium hathewayi DSM 13479] gi|288864049|gb|EFC96347.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium hathewayi DSM 13479] Length = 514 Score = 275 bits (704), Expect = 7e-72, Method: Composition-based stats. Identities = 74/385 (19%), Positives = 142/385 (36%), Gaps = 42/385 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDG-DDLYH 60 LL Y++QL+ K +L +++ + I +P HYR + HD + Sbjct: 142 GCQLLDMPYDKQLSLKQKQLEELLKPYCRVQPIIGMKDPFHYRNKVHAVFDHDKKGNPVS 201 Query: 61 IMFDQQTKERMRIDYFMPGSLLINAL-----------MIEMMATIRLEPLLRAKLFQIDY 109 +++ T + I+ + + + I+ LLR L + + Sbjct: 202 GVYEANTHRVVPIESCLIEDQKADEIIGTIRGMLKSFKIKTFDEDTGYGLLRHVLIRRGF 261 Query: 110 LTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGR-------ANKTKICL 162 T +VT + + LR+ +Q I ++ + Sbjct: 262 ATGDIMVVLVTA---SPVFPSKNNFVRALREKHPEITTIVQNINGRDTSMVLGDRENVLY 318 Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNG 221 + Y+++ L +R SF Q N + + A + +++ YCG G Sbjct: 319 GKGYIEDILC----GFRFRISSKSFYQVNPVQTEVLYRKAIELAGLTGKETVIDAYCGIG 374 Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281 +V ++ DRV+ VE+ + +V A N N + N + + F M Sbjct: 375 TIGIVASQEADRVIGVELNRDAVRDAAQNAKINGIKNAQFYCNDAGAFMSKMAD------ 428 Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILST-T 338 + +F+DPPRSG + + V ++Y+SC P++L RDL + Sbjct: 429 ------NGEHVDVVFMDPPRSGSTEEFIQSVAKIKPEKVVYVSCGPETLARDLGVFRKMG 482 Query: 339 HTIERLALFDQFPYTRHMECGVLLV 363 + + D FP H+E +++ Sbjct: 483 YEAKVAWGVDMFPQAAHVESVIMMQ 507 >gi|218134835|ref|ZP_03463639.1| hypothetical protein BACPEC_02738 [Bacteroides pectinophilus ATCC 43243] gi|217990220|gb|EEC56231.1| hypothetical protein BACPEC_02738 [Bacteroides pectinophilus ATCC 43243] Length = 489 Score = 275 bits (704), Expect = 7e-72, Method: Composition-based stats. Identities = 85/395 (21%), Positives = 152/395 (38%), Gaps = 36/395 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-------VPNLQIFR---SEPIHYRMRAEFHI 51 L YE QL K +++ + V + + EP HYR +A+F + Sbjct: 89 GCQLQEMSYEAQLRFKQNKVANNLKRLGGLGEADYVMHPIVGMTAPDEPYHYRNKAQFPV 148 Query: 52 WHDGDDLYH-IMFDQQTKERMR-IDYFM--PGSLLINALMIEMMATIRLEPL-------- 99 D D + +T + + +D + P + I ++ + M ++P Sbjct: 149 GCDRDGNIKIGFYAGRTHDIIDYMDCCIGDPVNKDILRIVRQWMTDNNIKPYNEENHSGV 208 Query: 100 LRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRL---RDALHARKYQIQLIGRAN 156 +R L + T + +V D+ ++ + + + Sbjct: 209 VRHILIRTGRATGEICVCLVINADKLQRYDSLVGELAKIDGMTSIMINVNREKTNVILGR 268 Query: 157 KTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLE 215 + R Y+++ + + YR SF Q N M + VL + + + + Sbjct: 269 HCETLWGRPYIEDCIG----DVRYRISPLSFYQVNPVQTKRMYDKVLEYAQLTGNEAVWD 324 Query: 216 LYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275 LYCG G SL LA++ +V VEI ++E A N A N+++N + ++E + Sbjct: 325 LYCGIGTISLFLAKNAKKVYGVEIVPQAIEDAGNNAALNNIDNAQFFVGKAEEVVPEFYK 384 Query: 276 EREFNRLKDI--DIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRD 331 R I VDPPR G D + + + A P I+Y+SC+ +L RD Sbjct: 385 NGGEGDTDSARSGADMLRPDVIVVDPPRKGCDTSLLDTMLEMAPPRIVYVSCDSATLARD 444 Query: 332 LSIL--STTHTIERLALFDQFPYTRHMECGVLLVR 364 L L S + + + +D F H+E V + R Sbjct: 445 LKYLRESGRYEVRDVQCYDNFCQGVHVETVVWMSR 479 >gi|71903755|ref|YP_280558.1| tRNA (uracil-5-)-methyltransferase [Streptococcus pyogenes MGAS6180] gi|71802850|gb|AAX72203.1| tRNA (uracil-5-)-methyltransferase [Streptococcus pyogenes MGAS6180] Length = 555 Score = 275 bits (704), Expect = 7e-72, Method: Composition-based stats. Identities = 79/385 (20%), Positives = 146/385 (37%), Gaps = 40/385 (10%) Query: 10 YEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 YE QL K +++ + I +EP+ YR +A+ + L F Sbjct: 99 YEDQLTFKKKQVQDSLYKIAGISDVTVESTIGMTEPLAYRNKAQVPVRRVNGQLETGFFR 158 Query: 65 QQTKERMRIDYFMPGSLLINAL-----------MIEMMATIRLEPLLRAKLFQIDYLTSQ 113 + + + + I + I+ L I+ LLR + + + + Sbjct: 159 KHSHDLIPISDYYIQDKEIDRLINFTRDLLRRFDIKPYDETEQTGLLRNIVVRRGHYSG- 217 Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD----YVDE 169 + ++ L+ R + ++ +A A IQ I N T +D Y + Sbjct: 218 --EMMLVLVTTRPKVFRVDQVIEKIVEAFPAVVSIIQNINDKN-TNAIFGKDFKTLYGKD 274 Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLA 228 +T + Y SF Q N + + + +A + + D +++ Y G G L A Sbjct: 275 TITDSMLGNNYAISAQSFYQVNTVMAEKLYQTAIAFSDLSKDDIVIDAYSGIGTIGLSFA 334 Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288 + V VE+ + +V A++N A N + N V +++ ++ Sbjct: 335 KTVKAVYGVEVIEAAVRDAQHNAALNGITNAYFVADTAEHAMATWAKD------------ 382 Query: 289 SYRFKTIFVDPPRSGLDDATVGM--VQAYPHILYISCNPDSLCRDLSILST-THTIERLA 345 + I VDPPR GL ++ + I Y+SCNP ++ RD+ + + ++ Sbjct: 383 GIKPSVILVDPPRKGLTESFIQASVAMGPQKITYVSCNPATMARDIKRYQELGYKLAKVQ 442 Query: 346 LFDQFPYTRHMECGVLLVRKPSGWH 370 D FP T H+E LL + H Sbjct: 443 PVDLFPQTHHVETVALLSKLGVDKH 467 >gi|223985932|ref|ZP_03635968.1| hypothetical protein HOLDEFILI_03274 [Holdemania filiformis DSM 12042] gi|223962119|gb|EEF66595.1| hypothetical protein HOLDEFILI_03274 [Holdemania filiformis DSM 12042] Length = 458 Score = 275 bits (704), Expect = 7e-72, Method: Composition-based stats. Identities = 89/383 (23%), Positives = 161/383 (42%), Gaps = 36/383 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMR--AEFHIWHDGDDLY 59 L Y QL K ++++Q++ + + + +EP YR + A F + G + Sbjct: 89 GCQLQHVDYPAQLDWKKEKVQQLLGRYGRVHDVLGMAEPWAYRNKVIATFSLSKKGK-VI 147 Query: 60 HIMFDQQTKERMRIDYFMPGSLL---INALMIEMMATIRLEP--------LLRAKLFQID 108 ++++ + + + + I A + E+M +R+EP L+R L ++ Sbjct: 148 AGIYEEDSHQLVAYSSCWIQDPIAEKILATVCELMTELRIEPYDEDQRTGLVRHCLIRVG 207 Query: 109 YLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYV- 167 ++ S + +V L+ + A ++ RLR + + N + + ++ V Sbjct: 208 HV---SREVLVCLVCASPIFPARKQLIQRLRQRHPEITTIVMNVNSRNTSVVLGSQERVL 264 Query: 168 --DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNFS 224 ++ L + SF Q N+ + + A + +L+ YCG G+ S Sbjct: 265 VGTGKIQDELCGLKFSIAAKSFYQINSVQTEVLYGKAMELANLTGKERVLDAYCGIGSIS 324 Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284 LV A+ V+ VE+ SV A N NH+ N V + F + RE Sbjct: 325 LVAAKAAKEVVGVEVNPVSVTNAIENARMNHLRNAWFVEADAGLFMEQAARE-------- 376 Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILS-TTHTI 341 + +F+DPPR+G D+ + + I+YISCNP + RDL L+ + + Sbjct: 377 ----GQAYDVVFMDPPRAGADERFLKSLCRLNPDRIVYISCNPSTQARDLRHLTHEGYQV 432 Query: 342 ERLALFDQFPYTRHMECGVLLVR 364 + D FP T H+E VLL R Sbjct: 433 RTIVPVDLFPMTSHVETIVLLQR 455 >gi|327470743|gb|EGF16199.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis SK330] Length = 469 Score = 275 bits (703), Expect = 8e-72, Method: Composition-based stats. Identities = 78/384 (20%), Positives = 154/384 (40%), Gaps = 40/384 (10%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFHIWHDGDDLY 59 L Y QL K +++ + + + +P+ YR +A+ + L Sbjct: 96 LGHLNYPAQLDFKRKQVKDSLYKIAGVSDVEVPPTLGMEQPLGYRNKAQVPVRRVNGQLE 155 Query: 60 HIMFDQQTKERMRIDYFMPGSLLINALMI---EMMATIRLEP--------LLRAKLFQID 108 F + + + + I+ F +I+ +++ +++ L+P L+R + + Sbjct: 156 TGFFRKNSHDLLPIEDFYIQDPVIDQVILFTRDLLRRFDLKPYDEQEKTGLIRNLVVRRG 215 Query: 109 YLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR 164 + + + +VT + L + E ++ + Q + + Sbjct: 216 HYSGEIMIILVTTRPKIFRVEQLIEHLTEAFPAIKSIMQNINDQPGNAIFGKDWRTLYGQ 275 Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNF 223 DY+ +++ ++ +F Q N + + + L ++ D+ L+ Y G G Sbjct: 276 DYITDQMLGND----FQIAAPAFYQVNTEMAEKLYQTALDFSELTADDVVLDAYSGIGTI 331 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 L +A+H V VE+ +VE +R N N + N V ++E Q +E Sbjct: 332 GLSVAKHVKEVYGVEVIPEAVENSRKNAEINGIANASYVCAPAEEAIQDWLKE------- 384 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGM-VQAYP-HILYISCNPDSLCRDLSILST-THT 340 + I VDPPR GL ++ + V P I YISCN ++ RD+ + + Sbjct: 385 -----GIQADVILVDPPRKGLTESFIKASVSMEPKKITYISCNVATMARDIKLYQELGYE 439 Query: 341 IERLALFDQFPYTRHMECGVLLVR 364 ++++ D FP T H+E LLVR Sbjct: 440 LKKVQPVDLFPQTHHVEAVSLLVR 463 >gi|330832292|ref|YP_004401117.1| RNA methyltransferase, TrmA family [Streptococcus suis ST3] gi|329306515|gb|AEB80931.1| RNA methyltransferase, TrmA family [Streptococcus suis ST3] Length = 435 Score = 275 bits (703), Expect = 8e-72, Method: Composition-based stats. Identities = 86/387 (22%), Positives = 152/387 (39%), Gaps = 40/387 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54 ++ +Y++QL K D L+Q + F+ + I +P HYR + +F Sbjct: 66 GCQIMHLRYDKQLDFKQDLLQQALKKFKPAGYENYTIYPTIGMDKPSHYRAKLQFQTRSF 125 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGS----LLIN---ALMIEMMATIRLEPL---LRAKL 104 D + ++ + + + I +IN L+ + I E +R + Sbjct: 126 KDQVKAGLYAENSHRLIGITNCYVQDAETQEIINGIAKLLTKHRIPIYNERKQHGIRTVM 185 Query: 105 FQIDYLTSQSDQAIVTLIYH---RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161 + T Q +T +L+D+ + + AL+ + + I KT+I Sbjct: 186 VRKARKTGQVQVIFITSCQVNLIKLIDELTSQFPSIITIALNWNRQKTSDI-YGEKTEIL 244 Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGN 220 +DE + + +F Q N + E V A DL++ YCG Sbjct: 245 WGEQAIDEAVL----DYEFSLSPRAFYQLNPQQTEILYGEAVKALDISGDEDLIDAYCGV 300 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G A+ V ++I ++E A+ N ++N ++E +E Sbjct: 301 GTIGFAFAKKVKSVRGMDIIPEAIEDAKANAKRMGLSNTHYEAGKAEEIIPKWYQE---- 356 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILSTT 338 YR + VDPPR+GLD+ + + Y ++Y+SCN +L RDL LS Sbjct: 357 --------GYRADALVVDPPRTGLDEKLLKTILDYKPAKMVYVSCNVSTLARDLVELSKA 408 Query: 339 HTIERLALFDQFPYTRHMECGVLLVRK 365 + +E + D FP+T E V L +K Sbjct: 409 YKVEYIQSVDMFPHTARTEAVVKLSKK 435 >gi|319938868|ref|ZP_08013232.1| 23S rRNA (Uracil-5-)-methyltransferase RumA [Streptococcus anginosus 1_2_62CV] gi|319811918|gb|EFW08184.1| 23S rRNA (Uracil-5-)-methyltransferase RumA [Streptococcus anginosus 1_2_62CV] Length = 453 Score = 275 bits (703), Expect = 9e-72, Method: Composition-based stats. Identities = 82/387 (21%), Positives = 157/387 (40%), Gaps = 40/387 (10%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAF-QVPNLQI----FRSEPIHYRMRAEFHIWHDGDDLY 59 L +Y +QL K ++R + + ++++ P+HYR +A+ + L Sbjct: 83 LGHLKYSEQLKFKTKKVRDSLYKIAGIADIEVAPTLGMEHPLHYRNKAQVPVRRVNGQLE 142 Query: 60 HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATI-------RLEPLLRAKLFQIDYLTS 112 F + + + M I+ F +I+ +++ + + E + I Sbjct: 143 TGFFRKNSHDLMPIEDFYIQDPVIDQVVLAVRDLLRRFDLKPYDEKEQSGLIRNIVVRRG 202 Query: 113 Q-SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGR-------ANKTKICLDR 164 S + +V L+ +R + RL K +Q I + + + Sbjct: 203 HYSGEIMVILVTNRPKIFRINQLIERLVAQFPNIKSIMQNINDQPGNAILGKEFHVLYGQ 262 Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNF 223 DY+ +R+ ++ +F Q N + + + + A I+ +++ Y G G Sbjct: 263 DYITDRMLDND----FQIAAPAFYQVNTEMAEKLYQTAIDFAELSIEDIVVDAYSGIGTI 318 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 L +A+H V VE+ +VE ++ N N ++N V S++ N +K Sbjct: 319 GLSVAKHVKEVYGVEVIPQAVENSKKNAELNGISNAHYVCDSAE------------NAIK 366 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCRDLSILST-THT 340 + I VDPPR GL ++ + V P I+YISCN ++ RD+ + + Sbjct: 367 KWLNQGIKPSVIMVDPPRKGLTESFIKSSVSMNPKKIVYISCNVATMARDIKLYQELGYK 426 Query: 341 IERLALFDQFPYTRHMECGVLLVRKPS 367 + ++ D FP T H+EC L+ R S Sbjct: 427 LTKVQPVDLFPMTHHVECIALIQRVKS 453 >gi|300214964|gb|ADJ79380.1| tRNA (Uracil-5-)-methyltransferase [Lactobacillus salivarius CECT 5713] Length = 456 Score = 275 bits (703), Expect = 9e-72, Method: Composition-based stats. Identities = 71/379 (18%), Positives = 156/379 (41%), Gaps = 40/379 (10%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 Y QL K + ++ + NL++ P +YR +A+ + L F Sbjct: 92 SYSAQLKFKRKLVTDLLQKVHLDNLEVADTLGMDTPYYYRNKAQVPVREVNGKLEIGFFK 151 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-----------LRAKLFQIDYLTSQ 113 + + + + +++F+ I+ +++++ +R+ + +R L + Y + + Sbjct: 152 RNSHDFVAMEHFLIQDKRIDEILLKVRDILRMSKITAYNEKKHTGMIRHILVRRGYYSHE 211 Query: 114 SDQAIVTLIYHRLLDDAW----RECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDE 169 + +V+ + D ++ + ++ + + KT +D + + Sbjct: 212 AMVVLVSRVRKIPNLDQIAFLIQQQCLDVKSVMLNVNPDKTNVILGKKTIKLAGKDTIQD 271 Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNFSLVLA 228 L L + SF Q N + + + A + +++ YCG G SL +A Sbjct: 272 TL----NGLKFDISAQSFYQVNPQQTEKLYQLAIENAELTGKETVIDAYCGIGTISLNMA 327 Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288 + +V VEI ++E A++N + N ++N+ ++ + + ++ Sbjct: 328 KFAKKVYGVEIVPEAIEDAKHNASLNDLDNLDFEVGEAEVWMEKWQK------------Q 375 Query: 289 SYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLS-ILSTTHTIER-L 344 + I VDPPR GL + + A ++Y+SCNP +L RD+ + + + + + Sbjct: 376 GIKPDVIMVDPPRKGLTSSLIQSAVAMEPKKVVYVSCNPATLVRDIQEFMELGYQVTKPI 435 Query: 345 ALFDQFPYTRHMECGVLLV 363 DQFP T H+E +L Sbjct: 436 QPVDQFPQTTHVESVTVLE 454 >gi|146318097|ref|YP_001197809.1| SAM-dependent methyltransferase related to tRNA (uracil-5-)-methyltransferase [Streptococcus suis 05ZYH33] gi|146320277|ref|YP_001199988.1| SAM-dependent methyltransferase related to tRNA (uracil-5-)-methyltransferase [Streptococcus suis 98HAH33] gi|253751287|ref|YP_003024428.1| RNA methyltransferase [Streptococcus suis SC84] gi|253753188|ref|YP_003026328.1| RNA methyltransferase [Streptococcus suis P1/7] gi|145688903|gb|ABP89409.1| SAM-dependent methyltransferase related to tRNA (uracil-5-)-methyltransferase [Streptococcus suis 05ZYH33] gi|145691083|gb|ABP91588.1| SAM-dependent methyltransferase related to tRNA (uracil-5-)-methyltransferase [Streptococcus suis 98HAH33] gi|251815576|emb|CAZ51159.1| putative RNA methyltransferase [Streptococcus suis SC84] gi|251819433|emb|CAR44912.1| putative RNA methyltransferase [Streptococcus suis P1/7] gi|292557857|gb|ADE30858.1| tRNA (uracil-5-)-methyltransferase [Streptococcus suis GZ1] gi|319757569|gb|ADV69511.1| tRNA (uracil-5-)-methyltransferase-like SAM-dependent methyltransferase [Streptococcus suis JS14] Length = 450 Score = 275 bits (703), Expect = 9e-72, Method: Composition-based stats. Identities = 86/387 (22%), Positives = 152/387 (39%), Gaps = 40/387 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54 ++ +Y++QL K D L+Q + F+ + I +P HYR + +F Sbjct: 81 GCQIMHLRYDKQLDFKQDLLQQALKKFKPAGYENYTIYPTIGMDKPSHYRAKLQFQTRSF 140 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGS----LLIN---ALMIEMMATIRLEPL---LRAKL 104 D + ++ + + + I +IN L+ + I E +R + Sbjct: 141 KDQVKAGLYAENSHRLIGITNCYVQDAETQEIINGIAKLLTKHRIPIYNERKQHGIRTVM 200 Query: 105 FQIDYLTSQSDQAIVTLIYH---RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161 + T Q +T +L+D+ + + AL+ + + I KT+I Sbjct: 201 VRKARKTGQVQVIFITSCQVNLIKLIDELTSQFPSIITIALNWNRQKTSDI-YGEKTEIL 259 Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGN 220 +DE + + +F Q N + E V A DL++ YCG Sbjct: 260 WGEQAIDEAVL----DYEFSLSPRAFYQLNPQQTEILYGEAVKALDISGDEDLIDAYCGV 315 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G A+ V ++I ++E A+ N ++N ++E +E Sbjct: 316 GTIGFAFAKKVKSVRGMDIIPEAIEDAKANAKRMGLSNTHYEAGKAEEIIPKWYQE---- 371 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILSTT 338 YR + VDPPR+GLD+ + + Y ++Y+SCN +L RDL LS Sbjct: 372 --------GYRADALVVDPPRTGLDEKLLKTILNYKPAKMVYVSCNVSTLARDLVELSKA 423 Query: 339 HTIERLALFDQFPYTRHMECGVLLVRK 365 + +E + D FP+T E V L +K Sbjct: 424 YKVEYIQSVDMFPHTARTEAVVKLSKK 450 >gi|253755011|ref|YP_003028151.1| RNA methyltransferase [Streptococcus suis BM407] gi|251817475|emb|CAZ55216.1| putative RNA methyltransferase [Streptococcus suis BM407] Length = 450 Score = 275 bits (703), Expect = 9e-72, Method: Composition-based stats. Identities = 86/387 (22%), Positives = 152/387 (39%), Gaps = 40/387 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54 ++ +Y++QL K D L+Q + F+ + I +P HYR + +F Sbjct: 81 GCQIMHLRYDKQLDFKQDLLQQALKKFKPAGYENYTIYPTIGMDKPSHYRAKLQFQTRSF 140 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGS----LLIN---ALMIEMMATIRLEPL---LRAKL 104 D + ++ + + + I +IN L+ + I E +R + Sbjct: 141 KDQVKAGLYAENSHRLIGITNCYVQDAETQEIINGIAKLLTKHRIPIYNERKQHGIRTVM 200 Query: 105 FQIDYLTSQSDQAIVTLIYH---RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161 + T Q +T +L+D+ + + AL+ + + I KT+I Sbjct: 201 VRKARKTGQVQVIFITSCQVNLIKLIDELTSQFPSIITIALNWNRQKTSDI-YGEKTEIL 259 Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGN 220 +DE + + +F Q N + E V A DL++ YCG Sbjct: 260 WGEQAIDEAVL----DYEFSLSPRAFYQLNPQQTEILYGEAVKALDISGDEDLIDAYCGV 315 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G A+ V ++I ++E A+ N ++N ++E +E Sbjct: 316 GTIGFAFAKKVKSVRGMDIIPEAIEDAKANAKRMGLSNTHYEAGKAEEIIPKWYQE---- 371 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILSTT 338 YR + VDPPR+GLD+ + + Y ++Y+SCN +L RDL LS Sbjct: 372 --------GYRADALVVDPPRTGLDEKLLKTILNYKPAKMVYVSCNVSTLARDLVELSKA 423 Query: 339 HTIERLALFDQFPYTRHMECGVLLVRK 365 + +E + D FP+T E V L +K Sbjct: 424 YKVEYIQSVDMFPHTARTEAVVKLSKK 450 >gi|153854051|ref|ZP_01995384.1| hypothetical protein DORLON_01375 [Dorea longicatena DSM 13814] gi|149753433|gb|EDM63364.1| hypothetical protein DORLON_01375 [Dorea longicatena DSM 13814] Length = 470 Score = 275 bits (703), Expect = 9e-72, Method: Composition-based stats. Identities = 80/403 (19%), Positives = 158/403 (39%), Gaps = 49/403 (12%) Query: 2 SGTLLID-QYEQQLAEKVDRLRQMMLAFQVPNLQ---------IFRS----EPIHYRMRA 47 G + + +Y QLA K ++R + + + +P YR +A Sbjct: 80 GGCQIQEMKYPAQLAFKEAKVRGNLERIGEVPTELLDQIMHPAVGMDGEGMQPFRYRNKA 139 Query: 48 EFHIWHDGDDL-YHIMFDQQTKERMRIDYFMPGSLL-----------INALMIEMMATIR 95 +F I D D + +T + G + + I ++ Sbjct: 140 QFPIGTDKDGRVIAGFYAGRTHSIIENTDCALGVEVNEEILNCILDFMEEFKIPAYDEVK 199 Query: 96 LEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALH------ARKYQI 149 + L+R L + + ++D+ +V L+ + + RLR + Sbjct: 200 HKGLVRHVLLRYGF---KTDEIMVCLVINGKTIPHCHDLVGRLRQIPGMTSITLSTNTAK 256 Query: 150 QLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGI 209 + + ++ ++++ + + + Y+ SF Q N + L G+ Sbjct: 257 TNVIMGDTIRLLWGQEFITDYIG----EIKYQISPLSFYQVNPVQTEKLYGLALD-YAGL 311 Query: 210 QGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267 G+ + +LYCG G SL LA+ +V VEI +++ A+ N N + N + ++ Sbjct: 312 TGNEAVWDLYCGIGTISLFLAKKAKQVYGVEIVPQAIDDAKNNAKINDITNAEFYVGKAE 371 Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNP 325 E +E E K + + I VDPPR G +++ + + ++Y+SC+ Sbjct: 372 EVLPEYYKEYE----KTHNGETAHADVIVVDPPRKGCEESLLQTIVDMQPEKVVYVSCDS 427 Query: 326 DSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRKPS 367 +L RD+ L + + ++ + DQFP+T H+E L R S Sbjct: 428 ATLARDVKFLRANGYELKDVTPVDQFPHTVHVEVVCCLHRVNS 470 >gi|77413725|ref|ZP_00789907.1| RNA methyltransferase, TrmA family [Streptococcus agalactiae 515] gi|77160216|gb|EAO71345.1| RNA methyltransferase, TrmA family [Streptococcus agalactiae 515] Length = 451 Score = 275 bits (703), Expect = 9e-72, Method: Composition-based stats. Identities = 85/388 (21%), Positives = 153/388 (39%), Gaps = 42/388 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54 ++ QY++QL K D +RQ ++ F+ + I EP HYR + +F + Sbjct: 81 GCQIMHLQYDKQLEFKTDVIRQALMKFKPEGYENYEIRKTIGMPEPEHYRAKLQFQVRSF 140 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMI---EMMATIRLEPLLRAKLFQIDYLT 111 G ++ ++ Q T + I + L ++ E++ +L K+ + + Sbjct: 141 GGNVRAGLYAQGTHRLIDIKDCLVQDRLTQEMINRVAELLGKYKLPIYNERKIAGVRTVM 200 Query: 112 SQ----SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANK-------TKI 160 + S + + I + LD + + I L K I + T++ Sbjct: 201 IRRAQASGEIQLIFITSKRLD--FDDVVIELVREFPELKTVAVNINASKTSDIYGQITEV 258 Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCG 219 ++ ++E + G +L +F Q N + E V A DL++ YCG Sbjct: 259 IWGQESINEEVLDYGFSL----SPRAFYQLNPKQTQILYSEAVNALDVKEDDDLIDAYCG 314 Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279 G L A V ++I +++ A+ N N +++ E Sbjct: 315 VGTIGLAFAGKVKSVRGMDIIPEAIQDAKENALHMGFTNTHYEAGKAEDIIPRWYSE--- 371 Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILST 337 +R + VDPPR+GLDD + + P ++Y+SCN +L RDL L+ Sbjct: 372 ---------GFRANALIVDPPRTGLDDKLLNTILKMPPEKMVYVSCNTSTLARDLVTLTK 422 Query: 338 THTIERLALFDQFPYTRHMECGVLLVRK 365 + + + D FP+T E V L RK Sbjct: 423 VYHVHYIQSVDMFPHTARTEAVVKLQRK 450 >gi|322517118|ref|ZP_08070002.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus vestibularis ATCC 49124] gi|322124268|gb|EFX95779.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus vestibularis ATCC 49124] Length = 452 Score = 275 bits (703), Expect = 1e-71, Method: Composition-based stats. Identities = 79/382 (20%), Positives = 152/382 (39%), Gaps = 40/382 (10%) Query: 7 IDQYEQQLAEKVDRLRQMMLAF-QVPNLQI----FRSEPIHYRMRAEFHIWHDGDDLYHI 61 YE+QL K ++ + + ++++ P YR +A+ + L Sbjct: 85 HMTYEEQLKFKRKQVVDNLYKTAGISDVEVAETLGMDTPYAYRNKAQVPVRRVKGQLETG 144 Query: 62 MFDQQTKERMRIDYFMPGSLLINALMI---EMMATIRLEP--------LLRAKLFQIDYL 110 + + + + + I+ F+ I+ L++ +++ L+P L+R + + + Sbjct: 145 FYRKNSHDLIPIEDFLIQDKEIDKLIVFVRDLLRRYDLKPYDEKEQTGLIRHLVVRRGHY 204 Query: 111 TSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD----Y 166 + Q VT R + ++ +A + IQ I N T ++ Y Sbjct: 205 SGQMMLVFVT---TRPKVFRIDQIIAKITEAFPSVVSIIQNINDKN-TNAIFGKEFRTLY 260 Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATK-GIQGDLLELYCGNGNFSL 225 + +T + Y SF Q N + + + + + +++ Y G G L Sbjct: 261 GQDTITDSMLGNDYEISAQSFYQVNTEMAEKLYQTAIDFSDLNSDSIVIDAYSGIGTIGL 320 Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285 A+ V VE+ + +VE A+ N N + N V S++ ++ Sbjct: 321 SFAKQVKEVYGVEVIETAVEDAKKNAECNGITNAHYVADSAENAMAKWSKD--------- 371 Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGM-VQAYP-HILYISCNPDSLCRDLSILST-THTIE 342 + I VDPPR GL ++ + V P I Y+SCNP ++ RD+ + ++ Sbjct: 372 ---GIKPDVIIVDPPRKGLTESFIKASVAMQPEKITYVSCNPATMARDIKRYQELGYELK 428 Query: 343 RLALFDQFPYTRHMECGVLLVR 364 ++ D FP T H+E LLVR Sbjct: 429 KVQPVDLFPQTHHVEVVSLLVR 450 >gi|222153492|ref|YP_002562669.1| RNA methyltransferase [Streptococcus uberis 0140J] gi|222114305|emb|CAR42966.1| putative RNA methyltransferase [Streptococcus uberis 0140J] Length = 451 Score = 275 bits (703), Expect = 1e-71, Method: Composition-based stats. Identities = 80/388 (20%), Positives = 146/388 (37%), Gaps = 42/388 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54 ++ Y QQL K D +RQ + F+ + I P HYR + +F Sbjct: 82 GCQIMHLAYPQQLVFKEDVIRQALKKFKPKGYEQYQIRNTIGMDNPWHYRAKLQFQTRSF 141 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAK 103 + ++ + + + ID + L++ I + ++E LR Sbjct: 142 SGKVVAGLYAEGSHRLIPIDNCLVQDQSTQEIVNHITQLLDQYKIPIYNERKIEG-LRTI 200 Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAI---RLRDALHARKYQIQLIGRANKTKI 160 + + + SQ+ Q I L + ++ +KT+I Sbjct: 201 MIR-KAIASQTLQIIFITSKEVHLAPIILDMTKTYPEIKTVALNINRSKSSELYGDKTEI 259 Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCG 219 +D ++E + + +F Q N + V+ A + + D +++ YCG Sbjct: 260 IWGQDTIEEEVL----DYHFALSPRAFYQLNPKQTSVLYAQVVEALEVSESDHIIDAYCG 315 Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279 G A+ + ++I ++E A+ N N +++ ++ Sbjct: 316 VGTIGFAFAKKVKSIRGMDIIPEAIEDAKKNAQDMGFENTYYECGKAEDIIPKWYQD--- 372 Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILST 337 YR I VDPPR+GLD + + Y ++Y+SCN +L RDL LS Sbjct: 373 ---------GYRADAIIVDPPRTGLDKKLIETIMTYQPEKMVYVSCNTSTLARDLVELSK 423 Query: 338 THTIERLALFDQFPYTRHMECGVLLVRK 365 +T++ + D FP+T E V L RK Sbjct: 424 VYTVDYIQSVDMFPHTARTEAVVKLRRK 451 >gi|313904339|ref|ZP_07837717.1| RNA methyltransferase, TrmA family [Eubacterium cellulosolvens 6] gi|313470889|gb|EFR66213.1| RNA methyltransferase, TrmA family [Eubacterium cellulosolvens 6] Length = 437 Score = 274 bits (702), Expect = 1e-71, Method: Composition-based stats. Identities = 82/390 (21%), Positives = 153/390 (39%), Gaps = 46/390 (11%) Query: 2 SGTLLIDQ-YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMR--AEFHIWHDGDDL 58 G + + YE+QLA K ++R +M P HYR + A F DG + Sbjct: 66 GGCVYLRHTYEEQLAIKEKQVRCLMEGIAKVRPVTGMENPYHYRNKVNAAFQRKRDGK-I 124 Query: 59 YHIMFDQQTKERMRIDYFMPGSLLINAL-----------MIEMMATIRLEPLLRAKLFQI 107 ++++ T + + + + + + + LLR + + Sbjct: 125 VSGIYEEGTHNVIPVSSCLIEDQKADEIIGTIRRLALSFKVRIYDEDHGSGLLRHVMIRR 184 Query: 108 DYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD---- 163 +++ Q +V L+ + + LR A H + L +T + L Sbjct: 185 GHVSG---QILVILVVASPVFPSKNNFVKALRAA-HPEITSVVLNVNDKQTSMVLGSRNI 240 Query: 164 ----RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYC 218 + Y+++ L +R +SF Q N+ + + A + + + YC Sbjct: 241 TLYGKGYIEDILC----GCRFRISPSSFYQINSVQTEKLYGKAIELAELTGEETVFDAYC 296 Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278 G G + + RV+ VE+ K +V A N N + N++ + F Sbjct: 297 GIGTIGITASAGAGRVIGVELNKDAVRDAAINAKLNDIPNIRFYADDAGRF--------- 347 Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILS 336 L ++ + +F+DPPRSG + + I+Y+SC+P+++ RDL L Sbjct: 348 ---LTEMAARGEKADVLFMDPPRSGSTEVFMKAAFEMEPSRIVYVSCDPETMARDLRYLR 404 Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVRKP 366 + + + FD FP+TR +EC +L RK Sbjct: 405 KNYNVGEIWPFDMFPWTRSIECVTVLKRKN 434 >gi|257875474|ref|ZP_05655127.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus casseliflavus EC20] gi|257809640|gb|EEV38460.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus casseliflavus EC20] Length = 458 Score = 274 bits (702), Expect = 1e-71, Method: Composition-based stats. Identities = 87/391 (22%), Positives = 152/391 (38%), Gaps = 43/391 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIF-------RSEPIHYRMRAEFHIWHD 54 L Y++QL K D L+Q + F+ Q F P HYR +A+F + ++ Sbjct: 84 GCQLQHLVYDKQLDFKKDLLKQALEKFKPKGYQQFELRDTLGMDVPWHYRNKAQFQLRYN 143 Query: 55 G--DDLYHIMFDQQTKERMRIDYFMPG-----------SLLINALMIEMMATIRLEPLLR 101 + +++ ++ + ID + L+N I + + +LR Sbjct: 144 SQTKRIEAGLYEMESHRLVAIDDCLVQEQDTQKVINGIVQLLNKYQIPIYDERKNSGILR 203 Query: 102 AKLFQIDYLTSQSDQAIVTLIYHRLLDDAW-RECAIRLRD---ALHARKYQIQLIGRANK 157 + +I T + +T +A RE RL + + + + + Sbjct: 204 TLMVRIGIATGEVQVVFITNSIKLPQKNALIREINQRLPQVVSIMQNVQNKKTSVVMGEE 263 Query: 158 TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLEL 216 T ++ ++ERL L + +F Q N + E + A +++ Sbjct: 264 TIHLSGKEAIEERL----NELTFDLSARAFFQLNPQQTSILYQEGLKALDLSKNETVVDA 319 Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276 YCG G L +A + V ++I ++E A+ N N +++E E Sbjct: 320 YCGVGTIGLSVAPYAKEVRGMDIIPQAIENAQENARRIGAQNTHYETGTTEELLPKWFNE 379 Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSI 334 ++ +I VDPPR+GLD+ + + P ++YISCN +L RDL Sbjct: 380 ------------GFKPDSIIVDPPRTGLDERLLQALLKQPPKKMVYISCNVSTLARDLVQ 427 Query: 335 LSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 L+ +E L D FP T E V L RK Sbjct: 428 LAKVFHVEYLQSVDMFPQTARCEVVVKLTRK 458 >gi|134300101|ref|YP_001113597.1| RNA methyltransferase [Desulfotomaculum reducens MI-1] gi|134052801|gb|ABO50772.1| 23S rRNA m(5)U-1939 methyltransferase [Desulfotomaculum reducens MI-1] Length = 457 Score = 274 bits (702), Expect = 1e-71, Method: Composition-based stats. Identities = 75/389 (19%), Positives = 144/389 (37%), Gaps = 44/389 (11%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFHIWHDGD 56 L Y++QL K + + + P HYR + + Sbjct: 83 GCQLQHLDYQEQLTYKRSVVESALFKIGGLKGVEVLPTLGMRNPWHYRNKIHLQVKEAKG 142 Query: 57 DLYHIMFDQQTKER-------------MRIDYFM-PGSLLINALMIEMMATIRLEPLLRA 102 + + + + E I+ + LIN+ + LLR Sbjct: 143 RIKLGFYAEGSYELAAGLAGQSCLLVQKEINQVIAILEELINSYKLTPYHWGEKRGLLRH 202 Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAI----RLRDALHARKYQIQLIGRANKT 158 + + + + Q +VT ++A+ + ++ + I + Sbjct: 203 VMIRQGFHSGQCMVVLVTSPEEWQAENAFSRALVARQPKIVSVIRNINRNPGRIVLGEEN 262 Query: 159 KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELY 217 ++ ++Y+ + L L + NSF Q N + + A +++ Y Sbjct: 263 RVMYGKEYIVDEL----NGLNFNISANSFYQVNTLQTEELYQKAKEFAQLQGHERVIDAY 318 Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277 CG G +L LAR V+ +EI P+V A+ N N + N K + + ++ M ++ Sbjct: 319 CGIGTIALYLARSTVEVVGMEIVPPAVADAKENARLNGITNTKFFQGAVEKLLPRMAKDL 378 Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL 335 + + +DPPR G + + + P I+Y+SC+P +L RDL +L Sbjct: 379 -------------KPDVVVLDPPRKGCEKEVLTAISESKVPRIVYVSCDPATLARDLGVL 425 Query: 336 ST-THTIERLALFDQFPYTRHMECGVLLV 363 + ++ D FP+T H+EC VL+ Sbjct: 426 DKLGYQTLQVQPVDMFPWTYHVECVVLMS 454 >gi|116493111|ref|YP_804846.1| tRNA (uracil-5-)-methyltransferase related enzyme [Pediococcus pentosaceus ATCC 25745] gi|116103261|gb|ABJ68404.1| 23S rRNA m(5)U-1939 methyltransferase [Pediococcus pentosaceus ATCC 25745] Length = 455 Score = 274 bits (702), Expect = 1e-71, Method: Composition-based stats. Identities = 72/383 (18%), Positives = 153/383 (39%), Gaps = 39/383 (10%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWHDGDDLYH 60 L Y+ QL K ++++ ++ + +L++ P YR +A+ + L Sbjct: 88 LQHITYDAQLKFKQNQIKNLLKKSHLEDLEVADTVGMENPTGYRNKAQIPVRKIKGKLQT 147 Query: 61 IMFDQQTKERMRIDYFMPGSLLINALMIEMMA-----------TIRLEPLLRAKLFQIDY 109 F + + + + I+ F +I+ +++E+ + ++R + + Sbjct: 148 GFFKRNSHDLVPIEDFYIQDPVIDKVIVEVRDILREFYIDPYREAENKGIIRNIMVRRGR 207 Query: 110 LTSQSDQAIVTLIYHRLLDDAWRECAIRL---RDALHARKYQIQLIGRANKTKICLDRDY 166 + Q ++T E + + Y+ + ++ ++ Sbjct: 208 RSGQIMVVLITRTKDVPHLAEITEAIAAIDGVVSVIQNINYKQTNVIMGDEDRVLAGESV 267 Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNFSL 225 + + L L + +SF Q N + + + A + ++++Y G G SL Sbjct: 268 IHDELL----GLDFIISAHSFYQVNPIQTEKLYQLAIDKAGLTGEETVIDVYSGIGTISL 323 Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285 +A+ +V VEI K +V+ A+ N N+ +N + V ++E Q + + Sbjct: 324 AMAKAAKKVYGVEIVKEAVQDAKINAFQNNASNTEFVVGKAEEQMQKWQED--------- 374 Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST-THTIE 342 + + VDPPR GLD + + ++Y+SCNP +L RD+ + + Sbjct: 375 ---GLKPDVVVVDPPRKGLDQSVIDATVGMKPKRVVYVSCNPATLVRDIDRFGEQGYVVN 431 Query: 343 R-LALFDQFPYTRHMECGVLLVR 364 + + DQFP T H+E +L R Sbjct: 432 QPIVPVDQFPQTPHVESVTVLER 454 >gi|301299733|ref|ZP_07205983.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus salivarius ACS-116-V-Col5a] gi|300852664|gb|EFK80298.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus salivarius ACS-116-V-Col5a] Length = 459 Score = 274 bits (702), Expect = 1e-71, Method: Composition-based stats. Identities = 71/379 (18%), Positives = 154/379 (40%), Gaps = 40/379 (10%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 Y QL K + ++ + NL++ P +YR +A+ + L F Sbjct: 92 SYSAQLKFKRKLVTDLLQKVHLDNLEVADTLGMDTPYYYRNKAQVPVREVNGKLEIGFFK 151 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-----------LRAKLFQIDYLTSQ 113 + + + + +++F+ I+ +++++ +R+ + +R L + Y + + Sbjct: 152 RNSHDFVAMEHFLIQDKRIDEILLKVRDILRMSKITAYNEEKHTGMVRHILVRRGYYSHE 211 Query: 114 SDQAIVTLIYHRLLDDAW----RECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDE 169 + +V+ + D ++ ++ + + KT +D + + Sbjct: 212 AMVVLVSRVRKIPNLDQIAFLIQQQCPDVKSVMLNVNPDKTNVILGKKTIKLAGKDTIQD 271 Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNFSLVLA 228 L L + SF Q N + + + A + +++ YCG G SL +A Sbjct: 272 TL----NGLKFDISAQSFYQVNPQQTEKLYQLAIENAELTGKETVIDAYCGIGTISLNMA 327 Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288 + +V VEI ++E A++N + N ++N+ ++ + + ++ Sbjct: 328 KFAKKVYGVEIVPEAIEDAKHNASLNDLDNLDFEVGEAEVWMEKWQK------------Q 375 Query: 289 SYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLS-ILSTTHTIER-L 344 + I VDPPR GL + + I+Y+SCNP +L RD+ + + + + + Sbjct: 376 GIKPDVIMVDPPRKGLTSSLIQSAVTMEPKKIVYVSCNPATLVRDIQEFMELGYQVTKPI 435 Query: 345 ALFDQFPYTRHMECGVLLV 363 DQFP T H+E +L Sbjct: 436 QPVDQFPQTTHVESVTVLE 454 >gi|223932599|ref|ZP_03624599.1| RNA methyltransferase, TrmA family [Streptococcus suis 89/1591] gi|302023441|ref|ZP_07248652.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus suis 05HAS68] gi|223898709|gb|EEF65070.1| RNA methyltransferase, TrmA family [Streptococcus suis 89/1591] Length = 450 Score = 274 bits (702), Expect = 1e-71, Method: Composition-based stats. Identities = 86/387 (22%), Positives = 152/387 (39%), Gaps = 40/387 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54 ++ +Y++QL K D L+Q + F+ + I +P HYR + +F Sbjct: 81 GCQIMHLRYDKQLDFKQDLLQQALKKFKPAGYENYTIYPTIGMDKPSHYRAKLQFQTRSF 140 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGS----LLIN---ALMIEMMATIRLEPL---LRAKL 104 D + ++ + + + I +IN L+ + I E +R + Sbjct: 141 KDQVKAGLYAENSHRLIGITNCYVQDAETQEIINGIAKLLTKHRIPIYNERKQHGIRTVM 200 Query: 105 FQIDYLTSQSDQAIVTLIYH---RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161 + T Q +T +L+D+ + + AL+ + + I KT+I Sbjct: 201 VRKARKTGQVQVIFITSCQVNLIKLIDELTSQFPSIITIALNWNRQKTSDI-YGEKTEIL 259 Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGN 220 +DE + + +F Q N + E V A DL++ YCG Sbjct: 260 WGEQAIDEAVL----DYEFSLSPRAFYQLNPQQTEILYGEAVKALDISGDEDLIDAYCGV 315 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G A+ V ++I ++E A+ N ++N ++E +E Sbjct: 316 GTIGFAFAKKVKSVRGMDIIPEAIEDAKANAKRMGLSNTHYEAGKAEEIIPKWYQE---- 371 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILSTT 338 YR + VDPPR+GLD+ + + Y ++Y+SCN +L RDL LS Sbjct: 372 --------GYRADALVVDPPRTGLDEKLLKTILDYKPAKMVYVSCNVSTLARDLVELSKA 423 Query: 339 HTIERLALFDQFPYTRHMECGVLLVRK 365 + +E + D FP+T E V L +K Sbjct: 424 YKVEYIQSVDMFPHTARTEAVVKLSKK 450 >gi|116334207|ref|YP_795734.1| tRNA (uracil-5-)-methyltransferase related enzyme [Lactobacillus brevis ATCC 367] gi|116099554|gb|ABJ64703.1| tRNA (uracil-5-)-methyltransferase related enzyme [Lactobacillus brevis ATCC 367] Length = 457 Score = 274 bits (702), Expect = 1e-71, Method: Composition-based stats. Identities = 77/381 (20%), Positives = 151/381 (39%), Gaps = 45/381 (11%) Query: 10 YEQQLAEKVDRLRQMMLAFQV---PNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66 Y QL K ++ ++ + P YR +A+ + L + Q Sbjct: 93 YPAQLKFKQHQIAELFSKSHQDVEVAPTMGMDNPTQYRNKAQVPVRMIKGQLETGFYRQH 152 Query: 67 TKERMRIDYFMPGSLLINALMIEMMA-----------TIRLEPLLRAKLFQIDYLTSQSD 115 + E + + F I+A +I++ + + ++R + + Y S Sbjct: 153 SHELIPLTDFYIQDPAIDAAIIKVRDLLRQFEIPAYNEVSDKGVIRNIMVRRGYY---SH 209 Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQI-------QLIGRANKTKICLDRDYVD 168 + ++ LI + + ++ AL + + N T++ + ++ Sbjct: 210 EMMIVLISRTQKIPSQAQLVDQIHQALPEVTSIVLNVNAKKTNVIMGNVTRVLYGKPTIE 269 Query: 169 ERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNFSLVL 227 + L L + SF Q N + + + A +++ YCG G SL L Sbjct: 270 DTLM----GLTFAISARSFYQVNPQQTEKLYQMAIDKAGLTGAETVIDAYCGIGTISLAL 325 Query: 228 ARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDI 287 A+H +V VEI ++E A+ N NH++NV +++ ++ + Sbjct: 326 AKHAKQVYGVEIVPEAIEDAKVNAQKNHLSNVTFAVNKAED------------QMAEWQA 373 Query: 288 HSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST-THTIER- 343 + I VDPPR GL ++ + A ++Y+SCNP +L RD++ + + ++ Sbjct: 374 AGIKPDVIVVDPPRKGLAESLIDSAAKMAPKKVVYVSCNPATLVRDVARFTELGYHVDGP 433 Query: 344 LALFDQFPYTRHMECGVLLVR 364 + DQFP T H+E +L R Sbjct: 434 VQPVDQFPQTPHVESVTVLKR 454 >gi|160943841|ref|ZP_02091072.1| hypothetical protein FAEPRAM212_01340 [Faecalibacterium prausnitzii M21/2] gi|158445015|gb|EDP22018.1| hypothetical protein FAEPRAM212_01340 [Faecalibacterium prausnitzii M21/2] Length = 394 Score = 274 bits (701), Expect = 1e-71, Method: Composition-based stats. Identities = 81/398 (20%), Positives = 148/398 (37%), Gaps = 46/398 (11%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHD-GDDLYH 60 LL Y +QL +K +++R ++ + + +P HYR + G L Sbjct: 12 GCPLLGLDYAEQLKQKEEKVRALVGKYGPVHPIRGMEQPYHYRNKVISTFATGWGGKLTS 71 Query: 61 IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKLFQIDY 109 ++ + + + ++ + +++ M + A LLR L + Sbjct: 72 GIYAANSHKVLPVESCLLQDEVLDKTMQAVRAAANACRYQSYDEDKGTGLLRHCLLRRGV 131 Query: 110 LTSQSDQAIVTL--------IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161 T Q +VT + + L + + + + + + K+ Sbjct: 132 ATGQVMVVLVTAQPVLPGAKNFVKALLTEAAQRGVTVTTVVQNVNSRKTSVVLGEAEKVL 191 Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGN 220 + ++ + L Y SF Q N + + A K ++ L+ YCG Sbjct: 192 YGKGFILDTLCGK----TYAISPRSFYQVNPAQTAVLYGLAVEAAKLTGKEVVLDAYCGI 247 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G L A H +V+ VE+ + +V+ A N N V N + + Sbjct: 248 GTIGLTAADHAKQVVGVELNRDAVQDAIGNARHNGVKNARFFAADAT------------R 295 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST- 337 +++ + IF+DPPR G + V A ++Y+SCNP +L RDL+ L+ Sbjct: 296 WIREAAAAGEKADVIFMDPPREGSTPEFLASVARMAPKRVVYVSCNPVTLARDLATLTKL 355 Query: 338 THTIERLALFDQFPYTRHMECGVLLV------RKPSGW 369 + E D FP+T H+E L +KPSG Sbjct: 356 GYKAEGFTPVDMFPHTEHIETVCALSKLEIHRKKPSGK 393 >gi|295092515|emb|CBK78622.1| 23S rRNA m(5)U-1939 methyltransferase [Clostridium cf. saccharolyticum K10] Length = 475 Score = 274 bits (701), Expect = 1e-71, Method: Composition-based stats. Identities = 84/411 (20%), Positives = 142/411 (34%), Gaps = 66/411 (16%) Query: 2 SGTLL-IDQYEQQLAEKVDRLRQMMLAFQVP---------------------------NL 33 G + YE+QL K ++ + Sbjct: 78 GGCQMQAVAYEEQLRFKERKVYNNLKRIGGLSGLLLPEEKGQENLEGTEKKRGETVRMEP 137 Query: 34 QIFRSEPIHYRMRAEFHIWHDGDDLY-HIMFDQQTKERMRIDYFMPGSLL---------- 82 I EP YR +A+F D D + +T + + + G Sbjct: 138 IIGMEEPWRYRNKAQFPFGRDKDGRIIAGFYAGRTHCIVENEDCLLGVEENREILDIIRN 197 Query: 83 -INALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDA 141 +N IE L+R L + + T + ++ + E +++ Sbjct: 198 FMNEYKIEPYNEELHRGLVRHVLIRKGFRTGELMVCLILNGTELPKKEILVERLLKIAGM 257 Query: 142 LHARKYQIQLIGRANKTKICLDRD----YVDERLTVAGRTLIYRQIENSFTQPNAGINVH 197 I KT + L ++ Y +T + YR SF Q N Sbjct: 258 -----TSISFNINREKTNVILGKEIVNLYGPGYITDYIGNVKYRISPLSFYQVNPVQTER 312 Query: 198 MLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH 255 + L G+ GD + +LYCG G SL LA+ +V VEI +++ AR N N Sbjct: 313 LYGTALE-YAGLTGDETVWDLYCGIGTISLFLAQKAKQVYGVEIVPQAIDDARGNAEING 371 Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--Q 313 + NV+ ++E + + I VDPPR G D+ + + Sbjct: 372 MENVEFFVGKAEEVLPEQYEKNQ-----------VYADVIVVDPPRKGCDEKCLETIVRM 420 Query: 314 AYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLV 363 ++Y+SC+ +L RD+ L + ++R+ D FP + H+E LL Sbjct: 421 GPKKVVYVSCDSATLARDVKYLGEKGYEVKRVRCVDMFPQSGHVETAALLT 471 >gi|308180110|ref|YP_003924238.1| RNA methyltransferase [Lactobacillus plantarum subsp. plantarum ST-III] gi|308045601|gb|ADN98144.1| RNA methyltransferase [Lactobacillus plantarum subsp. plantarum ST-III] Length = 457 Score = 274 bits (701), Expect = 2e-71, Method: Composition-based stats. Identities = 84/390 (21%), Positives = 155/390 (39%), Gaps = 50/390 (12%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWHDGDDLYH 60 L +Y +QL K ++ ++ + +++ I + P YR +A+ + L Sbjct: 88 LQHLEYSEQLKFKQHQVAELFAKVHMDDVEVLPTIGMANPTQYRNKAQVPVRQVQGQLTT 147 Query: 61 IMFDQQTKERMRIDYFMPGSLLINALMIEMMA-----------TIRLEPLLRAKLFQIDY 109 + + + + M I+ + I+ ++ + +R + + Y Sbjct: 148 GFYKKNSHQLMPIEDYYIQDPAIDKAIVVVRDILRKYHEAAYDEFHHSGTIRTIMVRRGY 207 Query: 110 LTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD------ 163 + + IVT H + D ++ AL IQ + + KT + L Sbjct: 208 YSHEMMVVIVTRTKHLPMADV---VTQEIQAALPEVVSVIQNVN-SKKTNVILGPVNNVL 263 Query: 164 --RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCG 219 + +D++L L + SF Q N + + + G+ G+ +++ Y G Sbjct: 264 AGKATIDDQLL----GLTFAISAQSFYQVNPQQTEKLYQLAID-QAGLTGNETVIDAYSG 318 Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279 G SL +A+H +V VEI +++ AR N N + N V S+++ + + Sbjct: 319 IGTISLTMAQHAKQVYGVEIVPAAIDNARQNADKNGITNATFVLDSAEKAMAKWQAD--- 375 Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST 337 + I VDPPR GLD + A ++YISCNP +L RD + Sbjct: 376 ---------GVKPDVIVVDPPRKGLDADFIKSAGEMAPKRVVYISCNPSTLVRDAQRFAE 426 Query: 338 -THTIER-LALFDQFPYTRHMECGVLLVRK 365 + I + DQFP T H+E +L R+ Sbjct: 427 YGYHISAPVQPVDQFPQTPHIESVTVLERE 456 >gi|313889955|ref|ZP_07823593.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pseudoporcinus SPIN 20026] gi|313121671|gb|EFR44772.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pseudoporcinus SPIN 20026] Length = 451 Score = 274 bits (700), Expect = 2e-71, Method: Composition-based stats. Identities = 77/386 (19%), Positives = 144/386 (37%), Gaps = 38/386 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54 ++ Y +QL K D +RQ + FQ + I EP YR + +F Sbjct: 82 GCQIMHLAYPKQLDFKDDLIRQSLKKFQPQGFENFPIKHTIGMVEPWRYRAKLQFQTRSF 141 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----------LRAKL 104 G ++ +F + + + I+ + ++ +++ + + LR + Sbjct: 142 GGKVHAGLFAEGSHHLISIENCLVQDSTTQTIINGIVSLLEGHKIPIYNERRIAGLRTVM 201 Query: 105 FQIDYLTSQSDQAIVT--LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162 + + Q VT ++ L ++ +T+I Sbjct: 202 IRKGQSSGQVQVIFVTSKELHLAPLVKELVTNFEEIKTVAVNYNRSKTSSLYGEQTEIIW 261 Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGNG 221 +D +DE + + +F Q N + E V A + +++ YCG G Sbjct: 262 GKDTIDEDVL----DYSFALSPRAFYQLNPQQTETLYSEVVKALEVSEEDQIIDAYCGVG 317 Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281 A+H + ++I ++ A+ N A N +++ +E Sbjct: 318 TIGFAFAKHVKGIRGMDIIPEAIADAKKNAKAMGFTNTYYETGKAEDLIPKWYQE----- 372 Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILSTTH 339 YR I VDPPR+GLD+ + + + ++Y+SCN +L RDL L+ + Sbjct: 373 -------GYRADAIIVDPPRTGLDEKLLETIIKFQPAKMVYVSCNTSTLARDLVTLAKVY 425 Query: 340 TIERLALFDQFPYTRHMECGVLLVRK 365 IE + D FP+T E V L +K Sbjct: 426 QIEYIQSVDMFPHTARTEAVVKLRKK 451 >gi|225377937|ref|ZP_03755158.1| hypothetical protein ROSEINA2194_03597 [Roseburia inulinivorans DSM 16841] gi|225210188|gb|EEG92542.1| hypothetical protein ROSEINA2194_03597 [Roseburia inulinivorans DSM 16841] Length = 454 Score = 274 bits (700), Expect = 2e-71, Method: Composition-based stats. Identities = 84/406 (20%), Positives = 148/406 (36%), Gaps = 62/406 (15%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAE--FHIWHDG---- 55 YEQQL EK +R+ + + I P HYR + F + G Sbjct: 52 GCDYQGMSYEQQLQEKQTYVRKNIGDYCKVLPIIGMENPYHYRNKVHAVFDVERRGKHAN 111 Query: 56 ---------------DDLYHIMFDQQTKERMRIDYFMPGSLL-----------INALMIE 89 + ++ T E + ID L +++ I+ Sbjct: 112 GGRRTAGNGHAKAAPGGVISGVYKAGTHEVINIDSCEIEDELSSTIIRDIRGLLHSFKIK 171 Query: 90 MMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQI 149 LLR L + + S + +V L+ + + LR + Sbjct: 172 TYDEDTGYGLLRHVLVRRGF---HSGEVMVVLVLGSPILPSKNNFVKALRKLHPEITTVV 228 Query: 150 QLIGR-------ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWV 202 I K + + Y+++ L +R SF Q N + Sbjct: 229 VNINDKQTSMVLGEKETVIYGKGYIEDTLC----GCTFRISPKSFYQVNPVQTEILYNKA 284 Query: 203 LA-ATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261 + A + +++ YCG G L+ A V+ VE+ + +V+ A N N++ N + Sbjct: 285 ITYAGLTGKEKVIDAYCGTGTIGLIAASKAKEVIGVELNRDAVKDAVINAKRNNIKNEQF 344 Query: 262 VRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHIL 319 + +F + + + +F+DPPR+G D+A + V A ++ Sbjct: 345 YNADAGKFMVELAE------------QNKKVDVVFMDPPRAGSDEAFLSSVVKLAPKKVV 392 Query: 320 YISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364 Y+SCNP++L RDL L+ + D FP+T+H+EC LL + Sbjct: 393 YVSCNPETLARDLKYLTRHGYQAVECQPCDMFPFTKHVECVCLLSK 438 >gi|28377929|ref|NP_784821.1| RNA methyltransferase [Lactobacillus plantarum WCFS1] gi|50401551|sp|Q88XP4|Y1151_LACPL RecName: Full=Uncharacterized RNA methyltransferase lp_1151 gi|28270763|emb|CAD63668.1| RNA methyltransferase [Lactobacillus plantarum WCFS1] Length = 457 Score = 274 bits (700), Expect = 2e-71, Method: Composition-based stats. Identities = 84/390 (21%), Positives = 156/390 (40%), Gaps = 50/390 (12%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWHDGDDLYH 60 L +Y +QL K ++ ++ + +++ I + P YR +A+ + L Sbjct: 88 LQHLEYSEQLKFKQHQVAELFAKVHMDDVEVLPTIGMANPTQYRNKAQVPVRQVQGQLTT 147 Query: 61 IMFDQQTKERMRIDYFMPGSLLINALMIEMMA-----------TIRLEPLLRAKLFQIDY 109 + + + + M I+ + I+ ++ + +R + + Y Sbjct: 148 GFYKKNSHQLMPIEDYYIQDPAIDKAIVVVRDILRKYHEAAYDEFHHSGTIRTIMVRRGY 207 Query: 110 LTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD------ 163 + + IVT H + D ++ AL IQ + + KT + L Sbjct: 208 YSHEMMVVIVTRTKHLPMADV---VTQEIQAALPEVVSVIQNVN-SKKTNVILGPVNNVL 263 Query: 164 --RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCG 219 + +D++L L + SF Q N + + + G+ G+ +++ Y G Sbjct: 264 AGKATIDDQLL----GLTFAISAQSFYQVNPQQTEKLYQLAID-QAGLTGNETVIDAYSG 318 Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279 G SL +A+H +V VEI +++ AR N N + N V S+++ + + Sbjct: 319 IGTISLTMAQHAKQVYGVEIVPAAIDNARQNADKNGITNATFVLDSAEKAMAKWQAD--- 375 Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST 337 + I VDPPR GLD + A ++YISCNP +L RD+ + Sbjct: 376 ---------GVKPDVIVVDPPRKGLDADFIKSAGEMAPKRVVYISCNPSTLVRDVQRFAE 426 Query: 338 -THTIER-LALFDQFPYTRHMECGVLLVRK 365 + I + DQFP T H+E +L R+ Sbjct: 427 YGYHISAPVQPVDQFPQTPHIESVTVLERE 456 >gi|254556113|ref|YP_003062530.1| RNA methyltransferase [Lactobacillus plantarum JDM1] gi|254045040|gb|ACT61833.1| RNA methyltransferase [Lactobacillus plantarum JDM1] Length = 457 Score = 274 bits (700), Expect = 2e-71, Method: Composition-based stats. Identities = 84/390 (21%), Positives = 155/390 (39%), Gaps = 50/390 (12%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWHDGDDLYH 60 L +Y +QL K ++ ++ + +++ I + P YR +A+ + L Sbjct: 88 LQHLEYSEQLKFKQHQVAELFAKVHMDDVEVLPTIGMANPTQYRNKAQVPVRQVQGQLTT 147 Query: 61 IMFDQQTKERMRIDYFMPGSLLINALMIEMMA-----------TIRLEPLLRAKLFQIDY 109 + + + + M I+ + I+ ++ + +R + + Y Sbjct: 148 GFYKKNSHQLMPIEDYYIQDPAIDKAIVVVRDILRKYHEAAYDEFHHSGTIRTIMVRRGY 207 Query: 110 LTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD------ 163 + + IVT H + D ++ AL IQ + + KT + L Sbjct: 208 YSHEMMVVIVTRTKHLPMADV---VTQEIQAALPEVVSVIQNVN-SKKTNVILGPVNNVL 263 Query: 164 --RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCG 219 + +D++L L + SF Q N + + + G+ G+ +++ Y G Sbjct: 264 AGKATIDDQLL----GLTFAISAQSFYQVNPQQTEKLYQLAID-QAGLTGNETVIDAYSG 318 Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279 G SL +A+H +V VEI +++ AR N N + N V S+++ + + Sbjct: 319 IGTISLTMAQHAKQVYGVEIVPAAIDNARQNADKNGITNATFVLDSAEKAMAKWQSD--- 375 Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST 337 + I VDPPR GLD + A ++YISCNP +L RD + Sbjct: 376 ---------GVKPDVIVVDPPRKGLDADFIKSAGEMAPKRVVYISCNPSTLVRDAQRFAE 426 Query: 338 -THTIER-LALFDQFPYTRHMECGVLLVRK 365 + I + DQFP T H+E +L R+ Sbjct: 427 YGYHISAPVQPVDQFPQTPHIESVTVLERE 456 >gi|313890778|ref|ZP_07824403.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pseudoporcinus SPIN 20026] gi|313120879|gb|EFR43993.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pseudoporcinus SPIN 20026] Length = 453 Score = 274 bits (700), Expect = 2e-71, Method: Composition-based stats. Identities = 74/382 (19%), Positives = 141/382 (36%), Gaps = 40/382 (10%) Query: 10 YEQQLAEKVDRLRQMM---LAFQVPN--LQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 YE+QL K +++ + + I +P YR +A+ + L F Sbjct: 88 YEEQLLFKAKQVKDNLYKTAGIKAVELLPTIGMEQPYAYRNKAQIPVRRVNGQLETGFFR 147 Query: 65 QQTKERMRIDYFMPGSLLINAL-----------MIEMMATIRLEPLLRAKLFQIDYLTSQ 113 + + + + I F I+ L + L++ + + + + Q Sbjct: 148 KNSHDLLPISDFYIQDKEIDKLILFVRNLLRRFQVSPYNEADQSGLIKNLVVRRGHYSGQ 207 Query: 114 SDQAIVTLIYHRLLDDAW----RECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDE 169 VT + E ++ + Q + K+ +DY+ + Sbjct: 208 MMLVFVTSRPKVFRVEQMVQLITEAFPQVVSIMQNVNDQNSNAIFSKDFKVLYGQDYITD 267 Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLA 228 + Y SF Q N + + + + + D+ ++ Y G G L A Sbjct: 268 SILGND----YMISAQSFYQVNTVMAEKLYQTAIDFSDLSADDVVIDAYSGIGTIGLSFA 323 Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288 + +V VE+ + +V+ AR N N + N + + S++ + +E Sbjct: 324 KKVKKVYGVEVIEAAVKDARKNAERNGIRNAEFLVGSAEAAMEKWSKE------------ 371 Query: 289 SYRFKTIFVDPPRSGLDDATVG--MVQAYPHILYISCNPDSLCRDLSILST-THTIERLA 345 + I VDPPR GL ++ + A I Y+SCNP ++ RD+ + + + Sbjct: 372 GIKPSVILVDPPRKGLTESFIKASAAMAPKKITYVSCNPATMARDIKHYQELGYNLIKAQ 431 Query: 346 LFDQFPYTRHMECGVLLVRKPS 367 D FP+T H+EC L+ R S Sbjct: 432 PVDLFPHTHHVECIALIQRVKS 453 >gi|322412063|gb|EFY02971.1| Putative RNA methyltransferase [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 452 Score = 274 bits (700), Expect = 2e-71, Method: Composition-based stats. Identities = 77/380 (20%), Positives = 144/380 (37%), Gaps = 40/380 (10%) Query: 10 YEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 YE QL K +++ + N I P+ YR +A+ + L F Sbjct: 88 YEDQLRFKQKQVQDNLYKIAGINDVTVNQTIGMDNPLAYRNKAQVPVRGVNGQLETGFFR 147 Query: 65 QQTKERMRIDYFMPGSLLINAL-----------MIEMMATIRLEPLLRAKLFQIDYLTSQ 113 + + + + I + I+ L ++ L+R + + + + Sbjct: 148 KHSHDLVPISDYYIQDKEIDRLINFTRELLHRFDVKPYDEKEQTGLIRHIVVRRGHYSG- 206 Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD----YVDE 169 + ++ L+ R + ++ + IQ I N T +D Y + Sbjct: 207 --EMMLVLVTTRPKVFRVDQVISKIVETFPEVVSIIQNINDKN-TNAIFGKDFKRLYGKD 263 Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLA 228 +T + Y SF Q N + + + +A + D +++ Y G G L A Sbjct: 264 TITDSMLGNDYAISAQSFYQVNTVMAEKLYQTAIAFSDLSDDDIVIDAYSGIGTIGLSFA 323 Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288 + V VE+ + +V+ A+ N A N + NV V +++ +E Sbjct: 324 KTVKAVYGVEVIETAVKDAQQNAARNGITNVHFVADTAENAMATWAKE------------ 371 Query: 289 SYRFKTIFVDPPRSGLDDATVGM--VQAYPHILYISCNPDSLCRDLSILST-THTIERLA 345 + I VDPPR GL ++ + I Y+SCNP ++ RD+ + + ++ Sbjct: 372 GIKPSVILVDPPRKGLTESFIQASVAMGPQKITYVSCNPATMARDIKRYQDLGYKLTKVQ 431 Query: 346 LFDQFPYTRHMECGVLLVRK 365 D FP T H+EC LL ++ Sbjct: 432 PVDLFPQTHHVECVSLLEKR 451 >gi|283796600|ref|ZP_06345753.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium sp. M62/1] gi|291076020|gb|EFE13384.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium sp. M62/1] Length = 475 Score = 274 bits (700), Expect = 2e-71, Method: Composition-based stats. Identities = 84/411 (20%), Positives = 142/411 (34%), Gaps = 66/411 (16%) Query: 2 SGTLL-IDQYEQQLAEKVDRLRQMMLAFQVP---------------------------NL 33 G + YE+QL K ++ + Sbjct: 78 GGCQMQAVAYEEQLRFKERKVYNNLKRIGGLSGLLLPEEKGQENLKGTEKKREETVRMEP 137 Query: 34 QIFRSEPIHYRMRAEFHIWHDGDDLY-HIMFDQQTKERMRIDYFMPGSLL---------- 82 I EP YR +A+F D D + +T + + + G Sbjct: 138 IIGMEEPWRYRNKAQFPFGRDKDGRIIAGFYAGRTHCIVENEDCLLGVEENREILDIIRN 197 Query: 83 -INALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDA 141 +N IE L+R L + + T + ++ + E +++ Sbjct: 198 FMNEYKIEPYNEELHRGLVRHVLIRKGFRTGELMVCLILNGTELPKKEILVERLLKIAGM 257 Query: 142 LHARKYQIQLIGRANKTKICLDRD----YVDERLTVAGRTLIYRQIENSFTQPNAGINVH 197 I KT + L ++ Y +T + YR SF Q N Sbjct: 258 -----TSISFNINREKTNVILGKEIVNLYGPGYITDYIGNVKYRISPLSFYQVNPVQTER 312 Query: 198 MLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH 255 + L G+ GD + +LYCG G SL LA+ +V VEI +++ AR N N Sbjct: 313 LYGTALE-YAGLTGDETVWDLYCGIGTISLFLAQKAKQVYGVEIVPQAIDDARGNAEING 371 Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--Q 313 + NV+ ++E + + I VDPPR G D+ + + Sbjct: 372 MENVEFFVGKAEEVLPEQYEKNQ-----------VYADVIVVDPPRKGCDEKCLETIVRM 420 Query: 314 AYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLV 363 ++Y+SC+ +L RD+ L + ++R+ D FP + H+E LL Sbjct: 421 GPKKVVYVSCDSATLARDVKYLGEKGYEVKRVRCVDMFPQSGHVETAALLT 471 >gi|116494563|ref|YP_806297.1| tRNA (uracil-5-)-methyltransferase related enzyme [Lactobacillus casei ATCC 334] gi|116104713|gb|ABJ69855.1| tRNA (uracil-5-)-methyltransferase related enzyme [Lactobacillus casei ATCC 334] Length = 454 Score = 274 bits (700), Expect = 2e-71, Method: Composition-based stats. Identities = 86/381 (22%), Positives = 160/381 (41%), Gaps = 38/381 (9%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQV---PNLQIFRSEPIHYRMRAEFHIWHDGDDLYHI 61 L I Y QL K +++++ + I + P+ YR +A+ + +L Sbjct: 87 LSILAYPAQLQFKQKQIQELYKKAHLDIAVLPTIGMTNPLGYRNKAQVPVRTVNGELQTG 146 Query: 62 MFDQQTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKLFQIDYL 110 + + + + + I+ F+ I+ ++ + +R + ++R + + + Sbjct: 147 FYKKHSHDLVPIEDFLIQDPKIDQTIVVVRDLLRKYHVPAYDERANKGVIRNIMVRRGHY 206 Query: 111 TSQSDQAIVTLIYHRL-LDDAWRECAIRLRDALHAR---KYQIQLIGRANKTKICLDRDY 166 T Q +V+ + L D E + L + + + K++ DY Sbjct: 207 TKQMMIVLVSQTWQVPHLKDIVEEITLALPEVTSVVVNLNDKRTNVILGRKSRTIYGEDY 266 Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELYCGNGNFSL 225 + ++L + ++ SF Q N + + + AA + ++++ Y G G SL Sbjct: 267 LLDKLLGSE----FQISPVSFYQVNPIQTEVLYKKAIEAAGLTGKENVIDAYSGIGTISL 322 Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285 +ARH V VE+ +P+V AR N NH++NV ++E Q + N L Sbjct: 323 TMARHAKHVYGVEVVEPAVRDARANAVRNHIDNVTFEVGKAEEVIQRWKD----NELP-- 376 Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST-THTIE 342 + VDPPR GLD + + V P I+Y+SCN +L RDL +L+ +T + Sbjct: 377 ------VDVLMVDPPRKGLDKSFIDAVGYMKPPKIVYVSCNSATLARDLQLLAAFGYTAK 430 Query: 343 RLALFDQFPYTRHMECGVLLV 363 D FP T+H+E L Sbjct: 431 ETQPVDMFPQTQHIESITALT 451 >gi|332686169|ref|YP_004455943.1| TrmA family RNA methyltransferase [Melissococcus plutonius ATCC 35311] gi|332370178|dbj|BAK21134.1| RNA methyltransferase, TrmA family [Melissococcus plutonius ATCC 35311] Length = 460 Score = 274 bits (700), Expect = 2e-71, Method: Composition-based stats. Identities = 80/384 (20%), Positives = 140/384 (36%), Gaps = 40/384 (10%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGDDLY 59 L Y +QL K +++ +M I + P YR +A+ + L Sbjct: 87 LQHMSYGEQLLFKQKQVKNVMKKIAKLPDTPVLPTIGMAVPKGYRNKAQIPARKVDNQLE 146 Query: 60 HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKLFQID 108 F + + E + I F I+ ++ + +R LR + + Sbjct: 147 TGFFRKNSHELIPIQDFYIQDPKIDQAILVIRDILRRFQVKPYNEQEHTGNLRQIIIRRG 206 Query: 109 YLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR 164 + + + +VT L H L + + + ++ + Sbjct: 207 HYSHEMMVILVTRTKKLFNHEQLVKEIMQKLPETISIIQNINPDKTNVIMGEESILLYGN 266 Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNF 223 Y++++L Y SF Q N ++ + + A +++ YCG G Sbjct: 267 PYINDQLLGKN----YHISAASFYQVNTEQTEYLYKTAIEFAGLSPTDQVVDAYCGIGTI 322 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 +L LA V VEI + ++ AR N A N + N ++E + Sbjct: 323 ALSLAEQVKHVYGVEIIEAAILDARENAAINQIENCTFNIGKAEEV------------MI 370 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILST-THT 340 D IFVDPPR GL ++ + I+YISCNP +L RDL + + + Sbjct: 371 DWQKAGISPNIIFVDPPRKGLTESFIETCTEMDPNRIIYISCNPATLARDLKLFAELGYE 430 Query: 341 IERLALFDQFPYTRHMECGVLLVR 364 ++ D FP T H+E LL + Sbjct: 431 TRKIQPVDLFPQTYHVETVALLQK 454 >gi|317495762|ref|ZP_07954125.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Gemella moribillum M424] gi|316913939|gb|EFV35422.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Gemella moribillum M424] Length = 537 Score = 273 bits (699), Expect = 2e-71, Method: Composition-based stats. Identities = 75/392 (19%), Positives = 154/392 (39%), Gaps = 39/392 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFHIWHDGD 56 L+ YE+QL K +++ +M + + HYR ++ + + Sbjct: 75 GANLVHMDYEEQLRFKTKKVQNIMKKTLGADSVKVLPTLGMKNGYHYRNKSVIPVQKVDN 134 Query: 57 DLYHIMFDQQTKERMRIDYFMPG-----------SLLINALMIEMMATIRLEPLLRAKLF 105 ++ + ++ + + I+ LI L + + + + +R +F Sbjct: 135 EVRMGYYKPRSHDVINIEKCFIQYDEHNKLMNDIRSLIIELDLSVYDEVSHKGAIRHIMF 194 Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDAWRECAI---RLRDALHARKYQIQLIGRANKTKICL 162 + + S+ I+ LD+ + R+ + + + +KT+ Sbjct: 195 RTNSSKSEIMVGIIAKERFANLDEFVEKITSLDDRIVSVMLNINDKKTNVIFGDKTENLF 254 Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNG 221 RDY+ + L + ++ SF Q N + L A + +++ YCG G Sbjct: 255 GRDYIVDVL----NNIEFKISLCSFYQVNPIQTEVLYSKALELAELKVDDTIIDAYCGIG 310 Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281 SL A+ +V +EI + +V A N N++ N + + S++ Sbjct: 311 TISLFAAQKVKKVYGIEIVEAAVLDALENAKNNNITNAEFLLGKSEDI------------ 358 Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILST-T 338 +K + + + + + VDPPR G + + + A ++Y+SCNP +L RD+ I+ Sbjct: 359 IKKLILQNIKLDAVIVDPPRKGCGENFLRDLAAMDIEKVVYVSCNPATLARDMGIMRRLG 418 Query: 339 HTIERLALFDQFPYTRHMECGVLLVRKPSGWH 370 + + + D FP T H+E LL + H Sbjct: 419 YKLGAVQPVDMFPGTYHVETVALLSKLDVDKH 450 >gi|188590211|ref|YP_001922461.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum E3 str. Alaska E43] gi|188500492|gb|ACD53628.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum E3 str. Alaska E43] Length = 455 Score = 273 bits (699), Expect = 2e-71, Method: Composition-based stats. Identities = 75/392 (19%), Positives = 160/392 (40%), Gaps = 44/392 (11%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFR-SEPIHYRMRAEFHIWHDG 55 ++ Y++QL K +R++ + + + S P YR + + I Sbjct: 80 GCSIQHMNYKKQLDFKWERVKDCIEKIGGLSKDLVKYPLGMESNPYRYRNKVQLPIGKIN 139 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGSLL---INALMIEMMATIRLEP-----------LLR 101 +++ + ++ + + +DY + + + + + + +EP +L+ Sbjct: 140 NEVVIGFYAPRSHDIIDLDYCLIQDKIADDVANITKQWIKKNNIEPATLDGQFNPNGILK 199 Query: 102 AKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161 + + + ++D+ +V L+ E + +++ K + I N T + Sbjct: 200 HLMIRRGF---KTDEVMVVLVATTSNIPHLDEFKNIILESIKGIKSIVLNINPKN-TNVI 255 Query: 162 LDRD----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLEL 216 L + Y ++ + + SF Q N + L + + + + + Sbjct: 256 LGEECITLYGEDTIKDYIGEFKFNISPLSFFQVNPIQTEILYNKALEYAELTENETVFDA 315 Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276 YCG G +L L++ +V VEI +P++ A+ N N+V+NV+ S+E + + Sbjct: 316 YCGTGTITLFLSQKAKKVYGVEIIEPAIINAKENAKLNNVDNVEFFVGKSEEVIPTLIND 375 Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSI 334 + + VDPPR G D + ++ ++Y+SC+P +L RDL I Sbjct: 376 ------------GIKADIVVVDPPRKGCDIKLLEAIEKVKPKKVVYVSCDPSTLSRDLKI 423 Query: 335 L-STTHTIERLALFDQFPYTRHMECGVLLVRK 365 L + + + D FP T H+E V L++K Sbjct: 424 LDEKGYKVVEIQPVDMFPQTSHIENVVKLIKK 455 >gi|206901370|ref|YP_002250424.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Dictyoglomus thermophilum H-6-12] gi|206740473|gb|ACI19531.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Dictyoglomus thermophilum H-6-12] Length = 448 Score = 273 bits (699), Expect = 2e-71, Method: Composition-based stats. Identities = 72/384 (18%), Positives = 136/384 (35%), Gaps = 37/384 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQV----PNLQIFRSEPIHYRMRAEFHIWHDGDD 57 L+ YE QL K + N I P YR +A+ + Sbjct: 80 GCHLMHVNYEYQLELKKMMVEDAFKRIGKIEKEVNPVIGMENPYRYRNKAKIPVGKRRGK 139 Query: 58 LYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLFQ 106 + + T + I+ + I IE+ ++ LLR + + Sbjct: 140 IVLGFYKPNTHYIVDINKCIVHHEDTDKVIETTKEAIKKFHIEVYNELQHTGLLRFVVVR 199 Query: 107 IDYLTSQSDQAIV---TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD 163 + +V + + + ++ L+ + ++++ L Sbjct: 200 RSFAFDDLMVILVSKGMIDNAKKVARFYKYKLKNLKSFYVNINPKRTNEIFGEESRLILG 259 Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNF 223 DE + ++ SF Q N+ + L + + YCG G Sbjct: 260 ----DETIRDKIGDFVFEISPVSFFQINSIQTEKLYNKALEYLSPNSRLVFDAYCGIGTI 315 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 SL L++ ++V +E+ + ++E A N N V NV+ + S+E + + Sbjct: 316 SLFLSKKAEKVYGIEVERTAIEDAWKNARLNKVKNVEFIWGRSEEVIPRLIED------- 368 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLS-ILSTTHT 340 + +DPPR G D + + I+YISC P +L RD++ +L+ + Sbjct: 369 -----GKIPDAVVLDPPRKGCDQNLLESIIRAKIRQIIYISCYPSTLARDINILLNAGYN 423 Query: 341 IERLALFDQFPYTRHMECGVLLVR 364 + + D FP T H+E LL + Sbjct: 424 LVDVQPVDMFPQTFHVETIALLEK 447 >gi|300766632|ref|ZP_07076549.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|300495732|gb|EFK30883.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus plantarum subsp. plantarum ATCC 14917] Length = 457 Score = 273 bits (699), Expect = 3e-71, Method: Composition-based stats. Identities = 84/390 (21%), Positives = 155/390 (39%), Gaps = 50/390 (12%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWHDGDDLYH 60 L +Y +QL K ++ ++ + +++ I P YR +A+ + L Sbjct: 88 LQHLEYSEQLKFKQHQVAELFAKVHMDDVEVLPTIGMVNPTQYRNKAQVPVRQVQGQLTT 147 Query: 61 IMFDQQTKERMRIDYFMPGSLLINALMIEMMA-----------TIRLEPLLRAKLFQIDY 109 + + + + M I+ + I+ ++ + +R + + Y Sbjct: 148 GFYKKNSHQLMPIEDYYIQDPAIDKAIVVVRDILRKYHEAAYDEFHHSGTIRTIMVRRGY 207 Query: 110 LTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD------ 163 + + IVT H + D ++ AL IQ + + KT + L Sbjct: 208 YSHEMMVVIVTRTKHLPMADV---VTQEIQAALPEVVSVIQNVN-SKKTNVILGPVNNVL 263 Query: 164 --RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCG 219 + +D++L L + SF Q N + + + G+ G+ +++ Y G Sbjct: 264 AGKATIDDQLL----GLTFAISAQSFYQVNPQQTEKLYQLAID-QAGLTGNETVIDAYSG 318 Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279 G SL +A+H +V VEI +++ AR N N + N V S+++ + + Sbjct: 319 IGTISLTMAQHAKQVYGVEIVPAAIDNARQNADKNGITNATFVLDSAEKAMAKWQAD--- 375 Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST 337 + I VDPPR GLD + A ++YISCNP +L RD+ + Sbjct: 376 ---------GVKPDVIVVDPPRKGLDADFIKSAGEMAPKRVVYISCNPSTLVRDVQRFAE 426 Query: 338 -THTIER-LALFDQFPYTRHMECGVLLVRK 365 + I + DQFP T H+E +L R+ Sbjct: 427 YGYHISAPVQPVDQFPQTPHIESVTVLERE 456 >gi|317056887|ref|YP_004105354.1| TrmA family RNA methyltransferase [Ruminococcus albus 7] gi|315449156|gb|ADU22720.1| RNA methyltransferase, TrmA family [Ruminococcus albus 7] Length = 417 Score = 273 bits (699), Expect = 3e-71, Method: Composition-based stats. Identities = 81/384 (21%), Positives = 151/384 (39%), Gaps = 36/384 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDG-DDLYH 60 G L + Y +QL K ++ +M+ F + EP +YR + + D + Sbjct: 23 GGCQLSESYSEQLTRKQEKAARMLSGFGRVEDIVPMEEPYNYRCKVQTVYATDSSKRIIS 82 Query: 61 IMFDQQTKERMRIDYFM---PGSLLINALMIEMMATIRLEP--------LLRAKLFQIDY 109 ++ +K + +D M + I + ++M +R+ P ++R L + + Sbjct: 83 GVYQSNSKRMVAVDDCMLEAQQAAPIVCTIKKLMKDMRIRPYDMRTGVGIVRHTLIRTSF 142 Query: 110 LTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGR----ANKTKICLDRD 165 T Q IVT + + + ++ + + I G ++ + Sbjct: 143 STGQVMVVIVTASAMLPSKNNFVKALVKAHPEITTVVHNICPDGMPLTLGERSIVLYGDG 202 Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFS 224 Y+++ L +R SF Q N + + + A +G +++ YCG G Sbjct: 203 YIEDELC----GCRFRISPASFYQVNPIQTEKLYSYAVEAAGITKGTKVIDAYCGTGTIG 258 Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284 ++ A + V VE K + A+ N N ++N+ + +F QAM E Sbjct: 259 IICAVNGADVTGVESNKHACRDAKVNAGLNGLDNISFYNEDAGKFMQAMASRGE------ 312 Query: 285 IDIHSYRFKTIFVDPPRSGLDDATV--GMVQAYPHILYISCNPDSLCRDLSIL-STTHTI 341 + +DPPR+G + + A I+Y+SC ++L RDL IL + Sbjct: 313 ------SCDVLIMDPPRAGASSEFIGCALKLAPKRIVYVSCKIETLERDLRILTKGGYKA 366 Query: 342 ERLALFDQFPYTRHMECGVLLVRK 365 + D FP+T +E V L RK Sbjct: 367 VNIQPVDMFPHTMGIETVVCLERK 390 >gi|312864433|ref|ZP_07724665.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus downei F0415] gi|311100035|gb|EFQ58247.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus downei F0415] Length = 450 Score = 273 bits (699), Expect = 3e-71, Method: Composition-based stats. Identities = 83/386 (21%), Positives = 146/386 (37%), Gaps = 38/386 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQV---PNLQI----FRSEPIHYRMRAEFHIWHD 54 ++ Y++QL K D ++Q + FQ N +I P HYR + +F H Sbjct: 81 GCQIMHLTYKKQLDFKDDIIKQALKKFQPIGYENYEIRPTKGMDNPYHYRAKLQFQTRHF 140 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGSLL---INALMIEMMATIRLEPL-------LRAKL 104 D + +F + + ++ + L I E++ ++ +R + Sbjct: 141 ADSVKAGLFASNSHRLVPLESCLVQDELTQEIVNKATELLDKYKIPIYNERKIAGVRTIM 200 Query: 105 FQIDYLTSQSDQAIVTLIYHRL--LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162 + +SQ VT RL L R ++ KT+I Sbjct: 201 VRKGQASSQVQIIFVTSKDIRLTALIKELRLAFPQIVTIAINYNSSKSSEIYGEKTQILW 260 Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGNG 221 ++ ++E + + +F Q N + E V A DL++ YCG G Sbjct: 261 GKETIEEEVL----DYSFSLSPRAFYQLNPQQTQVLYQEAVAALDAQPDDDLIDAYCGVG 316 Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281 A V +++ S+E A+ N ++N +++ +E Sbjct: 317 TIGFAFANKVRSVRGMDVIPESIEDAKENAKTLGLSNTYYETGKAEDIIPKWYQE----- 371 Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILSTTH 339 YR + VDPPR GLDD + + ++Y+SCN +L RDL LS + Sbjct: 372 -------GYRASALVVDPPRVGLDDKLLKTIIDVRPAKMVYVSCNASTLARDLVALSQVY 424 Query: 340 TIERLALFDQFPYTRHMECGVLLVRK 365 ++ + D FP+T +E V L +K Sbjct: 425 QVDYIQSVDMFPHTARVEAVVKLRKK 450 >gi|294619066|ref|ZP_06698561.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium E1679] gi|291594727|gb|EFF26109.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium E1679] Length = 460 Score = 273 bits (699), Expect = 3e-71, Method: Composition-based stats. Identities = 81/390 (20%), Positives = 147/390 (37%), Gaps = 43/390 (11%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN-------LQIFRSEPIHYRMRAEFHIWHD 54 L Y+ QL K D L Q + F+ I EP HYR +A+F + + Sbjct: 84 GCQLQHLAYQAQLDFKKDLLLQALEKFKPAGFRSYQLLPTIGMDEPWHYRNKAQFQLRKN 143 Query: 55 GD--DLYHIMFDQQTKERMRIDYFMPG-----------SLLINALMIEMMATIRLEPLLR 101 + +++ + + + I + L+N + + R Sbjct: 144 KQTQKIEAGLYEANSHQLVPITDCLVQEPRTQKVMNTVVQLLNKFDAPIYDERTNSGIFR 203 Query: 102 AKLFQIDYLTSQSDQAIVTLIYHRLLDDAW-RECAIRLRD---ALHARKYQIQLIGRANK 157 + +I T + +T +A RE RL + + + Q + ++ Sbjct: 204 TIMVRIGVKTGELQVVFITRSKKFPQKNAMIREINERLPEVVSIMQNVQAQKTSLVMGDE 263 Query: 158 TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLEL 216 T ++ ++E++ + + +F Q N + E + A +++ Sbjct: 264 TIHLWGKEAIEEQI----NEVTFDLSPRAFFQLNPQQTELLYGEGIKALDVQPNETIVDA 319 Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276 YCG G L +A+ V ++ ++ A+ N +N + ++++ E Sbjct: 320 YCGVGTIGLSVAKQAKEVRGMDTVPQAIADAKKNAERLGYHNTRYEVGTAEQVLPKWLNE 379 Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSI 334 ++ I VDPPR+GLD+A + + YP ++YISCN +L RDL Sbjct: 380 ------------GFQPDGIIVDPPRTGLDNALIQSLLKYPPKKLVYISCNVSTLARDLVN 427 Query: 335 LSTTHTIERLALFDQFPYTRHMECGVLLVR 364 LS IE L D FP T E V + R Sbjct: 428 LSKKFKIEYLQSVDMFPQTARCEVVVKMTR 457 >gi|293553261|ref|ZP_06673898.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium E1039] gi|291602671|gb|EFF32886.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium E1039] Length = 460 Score = 273 bits (699), Expect = 3e-71, Method: Composition-based stats. Identities = 81/390 (20%), Positives = 147/390 (37%), Gaps = 43/390 (11%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN-------LQIFRSEPIHYRMRAEFHIWHD 54 L Y+ QL K D L Q + F+ I EP HYR +A+F + + Sbjct: 84 GCQLQHLAYQAQLDFKKDLLLQALEKFKPAGFRSYQLLPTIGMDEPWHYRNKAQFQLRKN 143 Query: 55 GD--DLYHIMFDQQTKERMRIDYFMPG-----------SLLINALMIEMMATIRLEPLLR 101 + +++ + + + I + L+N + + R Sbjct: 144 KQTQKIEAGLYEANSHQLVPITDCLVQEPRTQKVMNTVVQLLNKFDAPIYDERTNSGIFR 203 Query: 102 AKLFQIDYLTSQSDQAIVTLIYHRLLDDAW-RECAIRLRD---ALHARKYQIQLIGRANK 157 + +I T + +T +A RE RL + + + Q + ++ Sbjct: 204 TIMVRIGVKTGELQVVFITRSKKFPQKNAMIREINERLPEVVSIMQNVQAQKTSLVMGDE 263 Query: 158 TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLEL 216 T ++ ++E++ + + +F Q N + E + A +++ Sbjct: 264 TIHLWGKEAIEEQI----NEVTFDLSPRAFFQLNPQQTELLYGEGIKALDVQPNETIVDA 319 Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276 YCG G L +A+ V ++ ++ A+ N +N + ++++ E Sbjct: 320 YCGVGTIGLSVAKQAKEVRGMDTVPQAIADAKKNAERLGYHNTRYEVGTAEQVLPKWLNE 379 Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSI 334 ++ I VDPPR+GLD+A + + YP ++YISCN +L RDL Sbjct: 380 ------------GFQPDGIIVDPPRTGLDNALIQSLLKYPPKKLVYISCNVSTLARDLVD 427 Query: 335 LSTTHTIERLALFDQFPYTRHMECGVLLVR 364 LS IE L D FP T E V + R Sbjct: 428 LSKKFKIEYLQSVDMFPQTARCEVVVKMTR 457 >gi|291524312|emb|CBK89899.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Eubacterium rectale DSM 17629] Length = 418 Score = 273 bits (699), Expect = 3e-71, Method: Composition-based stats. Identities = 79/375 (21%), Positives = 151/375 (40%), Gaps = 34/375 (9%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDG-DDLYHIMFDQQT 67 +Y++QL K +++++ F + P++YR + + + + T Sbjct: 59 EYKEQLKTKQAYMKKLLKPFCFVEPIVGMKNPLYYRHKVHAAFDCTRRGQIVAGAYRKNT 118 Query: 68 KERMRIDYFMP----GSLLINAL-------MIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116 + + I+ M +I + I+ LLR L + Y T Q Sbjct: 119 HDVVDIESCMIEEQESDEIIRDIKDMLRSFRIKTYDEDTGYGLLRHVLVRKGYATG---Q 175 Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD---YVDERLTV 173 +V L+ + + LR + + + + DR+ Y + Sbjct: 176 IMVVLVLASPILPSKNNFVKALRKKHPNITTVVLNVNDKRTSMVLGDRNITLYGKGFIED 235 Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELYCGNGNFSLVLARHFD 232 +R SF Q N + E + A + +++ YCG G ++ A++ Sbjct: 236 KLCGCTFRISPGSFYQVNPVQTELLYEKAIHEAHLTGKERVIDAYCGTGTIGIIAAKNAG 295 Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292 V+ VE+ + ++ A N N + N++ + +F M + + + Sbjct: 296 EVIGVELNRDAIRDAVTNAKRNDIRNIRFYNDDAGKFMVEMAQ------------NGEKA 343 Query: 293 KTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST-THTIERLALFDQ 349 + +DPPR+G D+A + V A ++Y+SC P++L RDL L+ +T++R +D Sbjct: 344 DVVIMDPPRTGSDEAFLSSVVKLAPERVVYVSCGPETLARDLKYLTKHGYTVKRATPYDC 403 Query: 350 FPYTRHMECGVLLVR 364 FPYT H+E VLL R Sbjct: 404 FPYTEHIETVVLLCR 418 >gi|153811043|ref|ZP_01963711.1| hypothetical protein RUMOBE_01434 [Ruminococcus obeum ATCC 29174] gi|149832931|gb|EDM88014.1| hypothetical protein RUMOBE_01434 [Ruminococcus obeum ATCC 29174] Length = 430 Score = 273 bits (698), Expect = 3e-71, Method: Composition-based stats. Identities = 84/387 (21%), Positives = 144/387 (37%), Gaps = 42/387 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDL-YH 60 LL YE+QL +K ++ +++ + I P HYR + H D Sbjct: 61 GCQLLDMPYEKQLKQKQKQVNKLLKPYCNTEKIIGMENPFHYRNKVHAVFGHRKDGTVIS 120 Query: 61 IMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLFQIDY 109 ++ Q T + +D + L+ + I+ L R L + + Sbjct: 121 GIYQQGTHFIVPVDECLIEDKRADAIIRDIRDLLKSFKIKTYNEDTGYGLFRHVLVRTGH 180 Query: 110 LTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGR-------ANKTKICL 162 S Q +V + + + LR I + K + Sbjct: 181 ---HSGQVMVVFVVGSPILPSKNNFVKALRKLHPEITTIILNVNNQKTSMILGEKETVLY 237 Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNG 221 + Y+++ L I+R SF Q N + + A + +++ YCG G Sbjct: 238 GKGYIEDELC----GHIFRISSKSFYQVNTAQTEKLYTKAIELAGLTGKERVIDAYCGIG 293 Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281 L+ + V++VE+ +V+ A N N + NV + + F + M E E Sbjct: 294 TIGLIASDKAKEVISVELNPDAVKDAIVNAKRNGIKNVHFYQNDAGVFMRQMADEGE--- 350 Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST-T 338 +F+DPPRSG D+ + V ++Y+SC+P +L RDL L+ Sbjct: 351 ---------SADVVFMDPPRSGSDEKFLSSVVTLNPKRVVYVSCDPTTLARDLKYLTKHG 401 Query: 339 HTIERLALFDQFPYTRHMECGVLLVRK 365 ++ D FP T H+E LL RK Sbjct: 402 YSAVTAVPVDMFPATEHVETVCLLSRK 428 >gi|69248258|ref|ZP_00604692.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium DO] gi|257880209|ref|ZP_05659862.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium 1,230,933] gi|257883010|ref|ZP_05662663.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium 1,231,502] gi|257891407|ref|ZP_05671060.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium 1,231,410] gi|257893596|ref|ZP_05673249.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium 1,231,408] gi|258614397|ref|ZP_05712167.1| RNA methyltransferase [Enterococcus faecium DO] gi|260560493|ref|ZP_05832667.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium C68] gi|289565178|ref|ZP_06445630.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium D344SRF] gi|293563312|ref|ZP_06677762.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium E1162] gi|293569307|ref|ZP_06680605.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium E1071] gi|294614976|ref|ZP_06694865.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium E1636] gi|294621465|ref|ZP_06700634.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium U0317] gi|314939803|ref|ZP_07847023.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium TX0133a04] gi|314943901|ref|ZP_07850627.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium TX0133C] gi|314949998|ref|ZP_07853291.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium TX0082] gi|314953520|ref|ZP_07856432.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium TX0133A] gi|314994278|ref|ZP_07859580.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium TX0133B] gi|314995146|ref|ZP_07860262.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium TX0133a01] gi|68194473|gb|EAN08972.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium DO] gi|257814437|gb|EEV43195.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium 1,230,933] gi|257818668|gb|EEV45996.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium 1,231,502] gi|257827767|gb|EEV54393.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium 1,231,410] gi|257829975|gb|EEV56582.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium 1,231,408] gi|260073495|gb|EEW61823.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium C68] gi|289162999|gb|EFD10847.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium D344SRF] gi|291588013|gb|EFF19863.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium E1071] gi|291592107|gb|EFF23727.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium E1636] gi|291598959|gb|EFF30007.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium U0317] gi|291604764|gb|EFF34248.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium E1162] gi|313590637|gb|EFR69482.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium TX0133a01] gi|313591313|gb|EFR70158.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium TX0133B] gi|313594443|gb|EFR73288.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium TX0133A] gi|313597442|gb|EFR76287.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium TX0133C] gi|313640943|gb|EFS05523.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium TX0133a04] gi|313643645|gb|EFS08225.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium TX0082] Length = 460 Score = 273 bits (698), Expect = 3e-71, Method: Composition-based stats. Identities = 81/390 (20%), Positives = 147/390 (37%), Gaps = 43/390 (11%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN-------LQIFRSEPIHYRMRAEFHIWHD 54 L Y+ QL K D L Q + F+ I EP HYR +A+F + + Sbjct: 84 GCQLQHLAYQAQLDFKKDLLLQALEKFKPAGFRSYQLLPTIGMDEPWHYRNKAQFQLRKN 143 Query: 55 GD--DLYHIMFDQQTKERMRIDYFMPG-----------SLLINALMIEMMATIRLEPLLR 101 + +++ + + + I + L+N + + R Sbjct: 144 KQTQKIEAGLYEANSHQLVPITDCLVQEPRTQKVMNTVVQLLNKFDAPIYDERTNSGIFR 203 Query: 102 AKLFQIDYLTSQSDQAIVTLIYHRLLDDAW-RECAIRLRD---ALHARKYQIQLIGRANK 157 + +I T + +T +A RE RL + + + Q + ++ Sbjct: 204 TIMVRIGVKTGELQVVFITRSKKFPQKNAMIREINERLPEVVSIMQNVQAQKTSLVMGDE 263 Query: 158 TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLEL 216 T ++ ++E++ + + +F Q N + E + A +++ Sbjct: 264 TIHLWGKEAIEEQI----NEVTFDLSPRAFFQLNPQQTELLYGEGIKALDVQPNETIVDA 319 Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276 YCG G L +A+ V ++ ++ A+ N +N + ++++ E Sbjct: 320 YCGVGTIGLSVAKQAKEVRGMDTVPQAIADAKKNAERLGYHNTRYEVGTAEQVLPKWLNE 379 Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSI 334 ++ I VDPPR+GLD+A + + YP ++YISCN +L RDL Sbjct: 380 ------------GFQPDGIIVDPPRTGLDNALIQSLLKYPPKKLVYISCNVSTLARDLVN 427 Query: 335 LSTTHTIERLALFDQFPYTRHMECGVLLVR 364 LS IE L D FP T E V + R Sbjct: 428 LSKKFKIEYLQSVDMFPQTARCEVVVKMTR 457 >gi|324991589|gb|EGC23522.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis SK353] Length = 469 Score = 273 bits (698), Expect = 3e-71, Method: Composition-based stats. Identities = 76/384 (19%), Positives = 155/384 (40%), Gaps = 40/384 (10%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFHIWHDGDDLY 59 L Y QL K +++ + + + +P+ YR +A+ + L Sbjct: 96 LGHLNYPAQLDFKRKQVKDSLYKIAGVSDVEVPPTLGMEQPLGYRNKAQVPVRRVNGQLE 155 Query: 60 HIMFDQQTKERMRIDYFMPGSLLINALMI---EMMATIRLEP--------LLRAKLFQID 108 F + + + + I+ F +I+ +++ +++ L+P L+R + + Sbjct: 156 TGFFRKNSHDLLPIEDFYIQDPVIDQVILFTRDLLRRFDLKPYDEQEKTGLIRNLVVRRG 215 Query: 109 YLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR 164 + + + +VT + L + E ++ + Q + + Sbjct: 216 HYSGEIMIILVTTRPKIFRVEQLMEHLTEAFPAIKSIMQNINDQPGNAIFGKDWRTLYGQ 275 Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNF 223 DY+ +++ ++ +F Q N + + + L ++ D+ ++ Y G G Sbjct: 276 DYITDQMLGND----FQIAAPAFYQVNTEMAEKLYQTALDFSELTADDVVIDAYSGIGTI 331 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 L +A++ +V VE+ +VE +R N N + N V ++E Q +E Sbjct: 332 GLSVAKYVKQVYGVEVIPEAVENSRKNAEINGIANASYVCAPAEEAIQDWLKE------- 384 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGM-VQAYP-HILYISCNPDSLCRDLSILST-THT 340 + I VDPPR GL ++ + V P I YISCN ++ RD+ + + Sbjct: 385 -----GIQADVILVDPPRKGLTESFIKASVSMEPKKITYISCNVATMARDIKLYQELGYE 439 Query: 341 IERLALFDQFPYTRHMECGVLLVR 364 ++++ D FP T H+E LLVR Sbjct: 440 LKKVQPVDLFPQTHHVEAVSLLVR 463 >gi|55822623|ref|YP_141064.1| TrmA family tRNA methyltransferase [Streptococcus thermophilus CNRZ1066] gi|55738608|gb|AAV62249.1| tRNA methyltransferase, TrmA family [Streptococcus thermophilus CNRZ1066] Length = 453 Score = 273 bits (698), Expect = 3e-71, Method: Composition-based stats. Identities = 78/382 (20%), Positives = 152/382 (39%), Gaps = 40/382 (10%) Query: 7 IDQYEQQLAEKVDRLRQMMLAF-QVPNLQI----FRSEPIHYRMRAEFHIWHDGDDLYHI 61 Y +QL K ++ + + ++++ P YR +A+ + L Sbjct: 85 HMTYTEQLKFKRKQVVDNLYKTAGISDVEVAETLGMETPYAYRNKAQVPVRRVKGQLETG 144 Query: 62 MFDQQTKERMRIDYFMPGSLLINALMI---EMMATIRLEP--------LLRAKLFQIDYL 110 + + + + + I+ F+ I+ L++ +++ L+P L+R + + + Sbjct: 145 FYRKNSHDLIPIEDFLIQDKEIDKLIVFVRDLLRRYDLKPYDEKEQTGLIRHLVVRRGHY 204 Query: 111 TSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD----Y 166 + Q VT + + ++ +A + IQ I N T ++ Y Sbjct: 205 SGQMMLVFVT---TKPKVFRIDQVIAKITEAFPSIVSIIQNINDKN-TNAIFGKEFRTLY 260 Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATK-GIQGDLLELYCGNGNFSL 225 + +T + Y SF Q N + + + + + +++ Y G G L Sbjct: 261 GQDTITDSMLGNDYEISAQSFYQVNTEMAEKLYQTAIDFSDLNSDSIVIDAYSGIGTIGL 320 Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285 A+ V VE+ + +VE A+ N N + N V S++ N + Sbjct: 321 SFAKQVREVYGVEVIETAVEDAKKNAERNGITNAHYVADSAE------------NAMAKW 368 Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGM-VQAYP-HILYISCNPDSLCRDLSILST-THTIE 342 + I VDPPR GL ++ + V P I Y+SCNP ++ RD+ + + ++ Sbjct: 369 SQDGIKPDVIIVDPPRKGLTESFIKASVAMQPEKITYVSCNPATMARDIKLYQDLGYELK 428 Query: 343 RLALFDQFPYTRHMECGVLLVR 364 ++ D FP T H+EC LL R Sbjct: 429 KVQPVDLFPQTHHIECVGLLTR 450 >gi|291548601|emb|CBL24863.1| 23S rRNA m(5)U-1939 methyltransferase [Ruminococcus torques L2-14] Length = 567 Score = 273 bits (698), Expect = 3e-71, Method: Composition-based stats. Identities = 81/395 (20%), Positives = 149/395 (37%), Gaps = 37/395 (9%) Query: 2 SGTLLID-QYEQQLAEKVDRLRQMMLAFQ---------VPNLQIFRSEPIHYRMRAEFHI 51 G + + Y++QL K ++R + V + P YR +A+F Sbjct: 78 GGCQIQEMSYDRQLVFKDQKIRGNLERIGGFTKDQIDTVMQPVVGMEHPFGYRNKAQFPF 137 Query: 52 WHDG-DDLYHIMFDQQTKERMRIDYFMPGSLL-----------INALMIEMMATIRLEPL 99 D + + +T + + G + I+ + L Sbjct: 138 GADKEGNPITGFYAGRTHDIIANTDCALGVEKNKEILEIILQYMRENKIKSYDEKTGKGL 197 Query: 100 LRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALH---ARKYQIQLIGRAN 156 +R L + + T + +V + E I++ + + + + Sbjct: 198 IRHVLIRYGFKTKEIMVCLVVNGKRLPKAERLIEKLIQIEGMTSITISPNTRRDNVIMGD 257 Query: 157 KTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLE 215 +I + Y+ + + + Y+ SF Q N + L A + + Sbjct: 258 SYEILWGQGYITDYIG----NVKYQISPLSFYQVNPVQTEKLYRLALEYADLKGDETVWD 313 Query: 216 LYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275 LYCG G SL LA+ +V VEI +++ A+ N N ++N + ++E Sbjct: 314 LYCGIGTISLFLAQKAKQVYGVEIVPQAIDDAKENAKINAIDNAEFFVGKAEEVLPEYYA 373 Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCRDLS 333 E E ++ + + I VDPPR G D+ + +V+ P ++Y+SC+ +L RDL Sbjct: 374 EYE----REHNGKTAHADVIVVDPPRKGCDETLLETIVKMQPEKVVYVSCDSATLARDLK 429 Query: 334 ILST-THTIERLALFDQFPYTRHMECGVLLVRKPS 367 L + I DQFP + H+E VLL K + Sbjct: 430 YLCANGYEIRMCRGVDQFPQSVHVETVVLLSHKKA 464 >gi|42519575|ref|NP_965505.1| hypothetical protein LJ1698 [Lactobacillus johnsonii NCC 533] gi|51316712|sp|Q74I68|Y1698_LACJO RecName: Full=Uncharacterized RNA methyltransferase LJ_1698 gi|41583864|gb|AAS09471.1| hypothetical protein LJ_1698 [Lactobacillus johnsonii NCC 533] Length = 450 Score = 273 bits (698), Expect = 3e-71, Method: Composition-based stats. Identities = 78/385 (20%), Positives = 153/385 (39%), Gaps = 40/385 (10%) Query: 3 GTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFR----SEPIHYRMRAEFHIWHDGDDL 58 +L +Y++QL K +++ ++ + N+++ + E YR +A+ + L Sbjct: 80 ASLAHIKYDKQLEFKRNQVVNLLHKADLDNVKVGQTMPSPEETGYRNKAQVPVREVNGKL 139 Query: 59 YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMA-----------TIRLEPLLRAKLFQI 107 F + + + + + F I+ ++I++ I + +R + Sbjct: 140 DIGFFRKHSHDLVPLTSFFTTDPEIDRVLIKVRDILRKNHVPAYDEIHNKGEVRYLEVRR 199 Query: 108 DYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR-DY 166 T + +V L+ +E + + + L KT + L + DY Sbjct: 200 SKATG---EIMVILVCLHKDFPQLKEVTKEISEIKG--VTSVVLNHNPKKTNVILGKKDY 254 Query: 167 V---DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGN 222 + + ++T + ++ SF Q N+ + + + D+ ++ Y G G Sbjct: 255 LLWGEPQITDKIGDVSFKISPQSFFQINSLQTPRLYDLAIQKADLKPDDVVIDAYSGIGT 314 Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282 L +A+H V +E+ +P+VE A N N + N + V ++E +E Sbjct: 315 IGLSVAKHVKAVRGMEVIEPAVEDANANAKLNGITNAEYVVGKAEEVMPRWAKE------ 368 Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STTH 339 + IFVDPPR GL + I+YISCNP ++ RDL + + Sbjct: 369 ------GLKTDVIFVDPPRKGLTPEFIDAAVETNPKKIVYISCNPATMVRDLQLFKEQGY 422 Query: 340 TIERLALFDQFPYTRHMECGVLLVR 364 + + D FP T H+E +L R Sbjct: 423 DFDEIDPVDMFPQTPHVEAVAVLER 447 >gi|293570978|ref|ZP_06682021.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium E980] gi|291608904|gb|EFF38183.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium E980] Length = 460 Score = 273 bits (698), Expect = 3e-71, Method: Composition-based stats. Identities = 78/393 (19%), Positives = 144/393 (36%), Gaps = 49/393 (12%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN-------LQIFRSEPIHYRMRAEFHIWHD 54 L Y+ QL K D L Q + F+ I EP HYR +A+F + + Sbjct: 84 GCQLQHLAYQAQLDFKKDLLLQALEKFKPAGFRSYQLLPTIGMDEPWHYRNKAQFQLRKN 143 Query: 55 GD--DLYHIMFDQQTKERMRIDYFMPG-----------SLLINALMIEMMATIRLEPLLR 101 + +++ + + + I + L+N + + R Sbjct: 144 KQTQKIEAGLYEANSHQLVPITDCLVQEPRTQKVMNTVVQLLNKFDAPIYDERTNSGIFR 203 Query: 102 AKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIG-------R 154 + +I ++ + V I + + L A +Q + Sbjct: 204 TIMVRIGV---KTGELQVVFITRSKKFPQKNAMIREINERLPAVVSIMQNVQAQKTSLVM 260 Query: 155 ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDL 213 ++T ++ ++E++ + + +F Q N + E + A + Sbjct: 261 GDETIHLWGKEAIEEQI----NEVTFDLSPRAFFQLNPQQTELLYGEGIKALDVQPNETI 316 Query: 214 LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273 ++ YCG G L +A+ V ++ ++ A+ N +N + ++++ Sbjct: 317 VDAYCGVGTIGLSVAKQAKEVRGMDTVPQAIADAKKNAERLGYHNTRYEVGTAEQVLPKW 376 Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRD 331 E ++ I VDPPR+GLD+A + + YP ++YISCN +L RD Sbjct: 377 LNE------------GFQPDGIIVDPPRTGLDNALIQSLLKYPPKKLVYISCNVSTLARD 424 Query: 332 LSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 L LS IE L D FP T E V + R Sbjct: 425 LVDLSKKFKIEYLQSVDMFPQTARCEVVVKMTR 457 >gi|323343147|ref|ZP_08083378.1| 23S rRNA (uracil-5-)-methyltransferase [Erysipelothrix rhusiopathiae ATCC 19414] gi|322463211|gb|EFY08406.1| 23S rRNA (uracil-5-)-methyltransferase [Erysipelothrix rhusiopathiae ATCC 19414] Length = 456 Score = 273 bits (698), Expect = 4e-71, Method: Composition-based stats. Identities = 80/388 (20%), Positives = 151/388 (38%), Gaps = 42/388 (10%) Query: 3 GTLLIDQ--YEQQLAEKVDRLRQMMLAF-----QVPNLQIFRSEPIHYRMRAEFHIWHDG 55 GT+ + Y+ Q K ++++ + + P HYR +A + Sbjct: 85 GTMPLQHMAYDLQCEYKQNQVKATLGRVIDLEGVPVLPTLGMENPWHYRNKATIPVQSVK 144 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKL 104 L F + T E + ++ F L+ IE L+R + Sbjct: 145 GVLETGFFKRGTHELIPVENFYIQEEALDKAILVIRDLLRHFKIEAYQEANHTGLIRNIM 204 Query: 105 FQIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKI 160 + + T + +VT L + + + ++ E + + + + ++ +I Sbjct: 205 VRQGHYTEELMVVLVTNGTELPFEKDIVNSIVEALPKTVSIVQNINTKQTNVILGSEQRI 264 Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCG 219 D ++L ++ SF Q N + + + + D++ + YCG Sbjct: 265 LFGEDLYHDQLLGK----TFKISSKSFFQINTKQTEVLYQQAIEMAEVTSDDVVVDAYCG 320 Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279 G+ +L LA V VEI + ++ A+ N NH+ NV+ +++ +E Sbjct: 321 IGSITLNLADKAKFVYGVEIVEDAIIMAKENAKLNHIENVQFEVGEAEKIMPTWVKE--- 377 Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATV--GMVQAYPHILYISCNPDSLCRDL-SILS 336 + VDPPR GLD + + I+Y+SCNP SL +DL S + Sbjct: 378 ---------GIEIDVLVVDPPRKGLDPLFIDAAIASKPRRIVYVSCNPISLAKDLRSFID 428 Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVR 364 + +E++ D FP T H+E VLL++ Sbjct: 429 GGYRVEKVQPVDMFPQTTHVETIVLLIK 456 >gi|291531353|emb|CBK96938.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Eubacterium siraeum 70/3] Length = 383 Score = 273 bits (698), Expect = 4e-71, Method: Composition-based stats. Identities = 82/387 (21%), Positives = 152/387 (39%), Gaps = 42/387 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHD-GDDLYH 60 L YEQQL K +++ F + I +P +YR + + D + Sbjct: 14 GCQLSNMTYEQQLEWKQKDTEKLLGGFGKVSEIIGADDPYNYRNKVQAVFRSDRNGRIIS 73 Query: 61 IMFDQQTKERMRIDYFMPGSLLINALMI---EMMATIRLEPL--------LRAKLFQIDY 109 ++ + ID M + +++ E++ + +L P LR L ++ Sbjct: 74 GVYQSSRNGIVGIDSCMLDDKRADEIIVGIRELLRSFKLHPYDEGTECGFLRHVLVRVGK 133 Query: 110 LTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALH-------ARKYQIQLIGRANKTKICL 162 T + +VTL+ + + L + +++ ++ Sbjct: 134 NTG---EILVTLVGGNSMFPKKHDFVKALVKRFPDITTVTFSVNRTPEMLLLGENNEVLY 190 Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNG 221 Y+ + L +R +SF Q N + ++ + A K + D+L + Y G G Sbjct: 191 GEGYITDILCGK----RFRISPHSFYQINHAQTEKLYDYAIKAAKLTKKDVLLDAYSGIG 246 Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVN-NVKIVRMSSKEFTQAMRREREFN 280 ++ + + +V +E +V A N N + N+ R + EF Sbjct: 247 TIGIIASDYVKQVQGIEYNASAVRDAVKNCHENGLTRNIAFNRGDAGEF----------- 295 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTT 338 L+ + + +DP R+G D + + A I+YISCNP + RDL L+ Sbjct: 296 -LEKKTKLGTHYDAVILDPARTGADRKFLNSLLKIAPERIVYISCNPATQARDLKTLTKK 354 Query: 339 HTIERLALFDQFPYTRHMECGVLLVRK 365 +T+ + FD FP+TRH+EC V + RK Sbjct: 355 YTVTDIQPFDMFPHTRHVECVVAMSRK 381 >gi|251782756|ref|YP_002997059.1| hypothetical protein SDEG_1350 [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242391386|dbj|BAH81845.1| hypothetical protein SDEG_1350 [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 453 Score = 273 bits (698), Expect = 4e-71, Method: Composition-based stats. Identities = 78/382 (20%), Positives = 147/382 (38%), Gaps = 40/382 (10%) Query: 10 YEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 YE QL K +++ + N I P+ YR +A+ + L F Sbjct: 88 YEDQLRFKQKQVQDNLYKIAGINDVTVNQTIGMDNPLAYRNKAQVPVRRVNGQLETGFFR 147 Query: 65 QQTKERMRIDYFMPGSLLINAL-----------MIEMMATIRLEPLLRAKLFQIDYLTSQ 113 + + + + I + I+ L ++ L+R + + + + Sbjct: 148 KHSHDLVPISDYYIQDKEIDRLINFTRELLRRFDVKPYDEKGQTGLIRHIVVRRGHYSG- 206 Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD----YVDE 169 + ++ L+ R + ++ ++ A IQ I N T +D Y + Sbjct: 207 --EMMLVLVTTRPKVFRVDQVISKIVESFPAVVSIIQNINDKN-TNAIFGKDFKTLYGKD 263 Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLA 228 +T + + SF Q N + + + +A + + D+ ++ Y G G L A Sbjct: 264 TITDSMLGNDFAISAQSFYQVNTVMAEKLYQTAIAFSDLSEDDVVIDAYSGIGTIGLSFA 323 Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288 + V VE+ + +V+ A+ N A N + NV V +++ +E Sbjct: 324 KTVKAVYGVEVIEAAVKDAQQNAARNGITNVHFVADTAENAMATWAKE------------ 371 Query: 289 SYRFKTIFVDPPRSGLDDATVGM--VQAYPHILYISCNPDSLCRDLSILST-THTIERLA 345 + I VDPPR GL ++ + I Y+SCNP ++ RD+ + + ++ Sbjct: 372 DIKPSVILVDPPRKGLTESFIQASVAMGPQKITYVSCNPATMARDIKRYQDLGYKLTKVQ 431 Query: 346 LFDQFPYTRHMECGVLLVRKPS 367 D FP T H+EC L+ R S Sbjct: 432 PVDLFPQTHHVECIALIQRMKS 453 >gi|81429088|ref|YP_396088.1| TrmA family RNA methyltransferase [Lactobacillus sakei subsp. sakei 23K] gi|78610730|emb|CAI55781.1| Putative RNA methyltransferase, TrmA family [Lactobacillus sakei subsp. sakei 23K] Length = 463 Score = 273 bits (698), Expect = 4e-71, Method: Composition-based stats. Identities = 82/385 (21%), Positives = 146/385 (37%), Gaps = 39/385 (10%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNL-------QIFRSEPIHYRMRAEFHIWHDGDD 57 L Y QLA K D + Q + F+ + P HYR +A+F + GD Sbjct: 91 LEHLSYPGQLAFKKDMMIQALEKFKPHGYNGYQVTETVGMENPWHYRNKAQFQVRQLGDH 150 Query: 58 LYHIMFDQQTKERMRIDYFMPGS-----------LLINALMIEMMATIRLEPLLRAKLFQ 106 L ++ + + + F + L+ L I + + +L+ + + Sbjct: 151 LGAGLYAPSSHTLIDLPEFATQTDLTMRIIRTVLKLVEDLGIPVFDEEKNAGILKTIVVR 210 Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD- 165 + T ++ +T A ++ L +Q + + + D+ Sbjct: 211 ESFSTGEAQLTFITNSPKLPKKYA---LITAIQAELPEVVSIMQNVNKGKNVLVWGDQTM 267 Query: 166 --YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGN 222 E + + + +F Q N M V A D L++ YCG G Sbjct: 268 HLAGQETIMENLNGVQFELTARAFFQLNPVQTAKMYNLVKEALDLTPEDRLVDAYCGVGT 327 Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282 L LA V ++ S+EAA++N N ++NV ++++ L Sbjct: 328 IGLSLANQVAEVRGMDTIADSIEAAKHNAEINGIDNVDYAVGAAEDL------------L 375 Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILSTTHT 340 + + + + VDPPR+GLD + + +Y+SCNP +L RDL L T+ Sbjct: 376 PEWLDNGFVPTALVVDPPRTGLDPKLIDAILDSRPLKFVYVSCNPSTLARDLKTLVHTYQ 435 Query: 341 IERLALFDQFPYTRHMECGVLLVRK 365 +E++ D FP T +E V + K Sbjct: 436 VEKIQPLDMFPQTARVEAIVTMRLK 460 >gi|329121754|ref|ZP_08250371.1| 23S rRNA (uracil-5-)-methyltransferase [Dialister micraerophilus DSM 19965] gi|327468224|gb|EGF13710.1| 23S rRNA (uracil-5-)-methyltransferase [Dialister micraerophilus DSM 19965] Length = 648 Score = 273 bits (697), Expect = 4e-71, Method: Composition-based stats. Identities = 77/392 (19%), Positives = 143/392 (36%), Gaps = 41/392 (10%) Query: 3 GTLLIDQYEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFHIWHDGDD 57 + YE QL K +R++ ++ + + + + YR + I Sbjct: 83 CQIPELSYEGQLKFKFNRVKSVISRIGKQDENKVLPVVSATHIVGYRNKMSIPIGTQNGK 142 Query: 58 LYHIMFDQQTKERMRIDYFMPGSLL-----------INALMIEMMATIRLEPLLRAKLFQ 106 + T E + M + IN I + + +R + + Sbjct: 143 AVSGYYKSGTHEIIPSTDCMIQNETNNKLAKFAQDFINKNKITVYNEKTHKGSVRHIVGR 202 Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD--- 163 I + IVT + W E + + + + +Q KT + L Sbjct: 203 IGD-DGKLMAVIVTSTNELPCKEKWIEEMRKSVPEVISIYHNVQD----KKTNVILGNKM 257 Query: 164 -RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNG 221 + ++ L + L + SF Q N + E L A +++ YCG G Sbjct: 258 EHIWGEKTLKASIGKLTFEISPYSFFQVNKEQVEKLYEKALDFANLSGDETVIDAYCGTG 317 Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281 SL LA+ V+ +EI K ++E A+ N N + NV+ ++ Sbjct: 318 TISLYLAQKAKHVIGIEIIKDAIENAKENAKRNKIKNVEFHAADVAKY------------ 365 Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILS-TT 338 L ++ + + + +DP R+G D+ + + I+Y+SCN + RD+ LS Sbjct: 366 LPELAKKGIKAEVVVLDPVRAGCDEKVIEAIGKINPERIVYVSCNVATQARDIERLSKKG 425 Query: 339 HTIERLALFDQFPYTRHMECGVLLVRKPSGWH 370 + + ++ D FP T H+E LL + H Sbjct: 426 YKLIKIQPIDMFPQTTHVETVALLYKLDVDKH 457 >gi|306820595|ref|ZP_07454224.1| 23S rRNA (uracil-5-)-methyltransferase [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304551326|gb|EFM39288.1| 23S rRNA (uracil-5-)-methyltransferase [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 452 Score = 273 bits (697), Expect = 5e-71, Method: Composition-based stats. Identities = 83/388 (21%), Positives = 156/388 (40%), Gaps = 41/388 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMML---AFQVPNLQ--IFRSEPIHYRMRAEFHIWHDGD 56 +L Y QL K D + Q + P + + P YR + + + Sbjct: 80 GCQILDISYNNQLKIKKDMVFQKLTRIGKIDNPKINDVVGMDSPFRYRNKVQLPVGGTIG 139 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-----------LRAKLF 105 D+ + Q+T + + + + N ++ + + + LR + Sbjct: 140 DVKIGFYRQKTHDIIPFKDCIIQDEINNEIIKMIKNYMSFAKIIPYNEKDSTGVLRHIVT 199 Query: 106 QIDYLTSQSDQAIVTLIYHRL----LDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161 +I SQ +VT +L L + ++ + + + + + ++ + Sbjct: 200 KISNDKSQIMLILVTNTDKKLDISYLVEEIKKNNLNITSIIQNINKKNTNVILSSDNILL 259 Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGN 220 DY+ E + L ++ NSF Q N M L + D++ +LYCG Sbjct: 260 YGNDYITEYI----DDLKFKIYPNSFFQVNYTQMEKMYNKALDYASIDKDDVVYDLYCGI 315 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G SL+LA+ V +E+ + S+ +A+ N N++ NV+ + + N Sbjct: 316 GTISLLLAKRAKYVYGIEVVQQSITSAKENARENNIENVEFICGKVE------------N 363 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSIL--S 336 +K + + I +DP R G + + + + I+YISCNP +L RDL IL S Sbjct: 364 EIKALIKKAKSPDIIVLDPARKGCEVTVLDTILSVSPKKIVYISCNPSTLARDLKILLDS 423 Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVR 364 + +E + FD F ++ H+E VLL + Sbjct: 424 GKYILEEVTPFDLFCHSTHIENVVLLSK 451 >gi|55820731|ref|YP_139173.1| TrmA family tRNA methyltransferase [Streptococcus thermophilus LMG 18311] gi|55736716|gb|AAV60358.1| tRNA methyltransferase, TrmA family [Streptococcus thermophilus LMG 18311] Length = 453 Score = 273 bits (697), Expect = 5e-71, Method: Composition-based stats. Identities = 78/382 (20%), Positives = 150/382 (39%), Gaps = 40/382 (10%) Query: 7 IDQYEQQLAEKVDRLRQMMLAF-QVPNLQI----FRSEPIHYRMRAEFHIWHDGDDLYHI 61 Y +QL K ++ + + ++++ P YR +A+ + L Sbjct: 85 HMTYTEQLKFKRKQVVDNLYKTAGISDVEVAETLGMETPYAYRNKAQVPVRRVKGQLETG 144 Query: 62 MFDQQTKERMRIDYFMPGSLLINALMI---EMMATIRLEP--------LLRAKLFQIDYL 110 + + + + + I+ F+ I+ L++ +++ L+P L+R + + + Sbjct: 145 FYRKNSHDLIPIEDFLIQDKEIDKLIVFVRDLLRRYDLKPYDEKEQTGLIRHLVVRRGHY 204 Query: 111 TSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD----Y 166 + Q VT + + ++ +A IQ I N T ++ Y Sbjct: 205 SGQMMLVFVT---TKPKVFRIDQVIAKITEAFPNIVSIIQNINDKN-TNAIFGKEFRTLY 260 Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATK-GIQGDLLELYCGNGNFSL 225 + +T + Y SF Q N + + + + + +++ Y G G L Sbjct: 261 GQDTITDSMLGNDYEISAQSFYQVNTEMAEKLYQTAIDFSDLNSDSIVIDAYSGIGTIGL 320 Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285 A+ V VE+ + +VE A+ N N + N V S++ N + Sbjct: 321 SFAKQVKEVYGVEVIETAVEDAKKNAERNGITNAHYVANSAE------------NAMAKW 368 Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGM-VQAYP-HILYISCNPDSLCRDLSILST-THTIE 342 + I VDPPR GL ++ + V P I Y+SCNP ++ RD+ + ++ Sbjct: 369 SQDGIKPDVIIVDPPRKGLTESFIKASVAMQPEKITYVSCNPATMARDIKRYQELGYELK 428 Query: 343 RLALFDQFPYTRHMECGVLLVR 364 ++ D FP T H+EC LL R Sbjct: 429 KVQPVDLFPQTHHIECVGLLTR 450 >gi|291518105|emb|CBK73326.1| 23S rRNA m(5)U-1939 methyltransferase [Butyrivibrio fibrisolvens 16/4] Length = 460 Score = 272 bits (696), Expect = 5e-71, Method: Composition-based stats. Identities = 78/393 (19%), Positives = 151/393 (38%), Gaps = 42/393 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ---------VPNLQIFRSEPIHYRMRAEFHIW 52 ++ Y++QL K + + ++ + + +EP+ YR +A+ I Sbjct: 79 GCQIMQVSYDKQLEIKDNIVANNLVKIGGYDRAFVDSIREPILGMAEPLRYRNKAQVPIG 138 Query: 53 HDGDDLY-HIMFDQQTKERMRIDYFMPGSLL-----------INALMIEMMATIRLEPLL 100 D D + ++ + D S + + + L+ Sbjct: 139 TDKDGNIIAGFYGARSHRIVPSDDCKICSKKSMNIVYAVIDYMKECGVSAYNEATGKGLI 198 Query: 101 RAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQ----LIGRAN 156 R L + T ++ +V D + L + I + Sbjct: 199 RHVLVREGKATGETMVCVVVNGDKLPKVDTLVAHVKSVEPELASLVLNINTRRDNVIMGY 258 Query: 157 KTKICLDRDYVDERLTV-AGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLL 214 +TK+ ++ + + +T+ G T+ + NSF Q N + L A + ++ Sbjct: 259 ETKVLYGKEAIRDTITLTNGDTIAFDISANSFYQVNHDQMERLYSKALEYAGLTGKEEVW 318 Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274 +LYCG G SL +A+H V+ +E+ ++E A+ N N ++N + ++ Sbjct: 319 DLYCGIGTISLSMAKHAGHVIGIEVVPQAIENAKANAKLNGLDNTEFYCGEAEVV----- 373 Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCRDL 332 L +I I VDPPR G D + M++ P I+Y+SC+ +L RDL Sbjct: 374 -------LPEIYEKMSHPDVIMVDPPRKGCDVVALDTMIKMQPERIVYVSCDSATLARDL 426 Query: 333 SILST-THTIERLALFDQFPYTRHMECGVLLVR 364 L + +++ + DQF +T H E +L + Sbjct: 427 KHLEENGYHLQKYTVCDQFGHTMHTETVAILAK 459 >gi|329667821|gb|AEB93769.1| hypothetical protein LJP_1447c [Lactobacillus johnsonii DPC 6026] Length = 450 Score = 272 bits (696), Expect = 5e-71, Method: Composition-based stats. Identities = 78/385 (20%), Positives = 153/385 (39%), Gaps = 40/385 (10%) Query: 3 GTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFR----SEPIHYRMRAEFHIWHDGDDL 58 +L +Y++QL K +++ ++ + N+++ + E YR +A+ + L Sbjct: 80 ASLANIKYDKQLEFKRNQVVNLLHKADLDNVKVGQTMPSPEETGYRNKAQVPVREVNGKL 139 Query: 59 YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMA-----------TIRLEPLLRAKLFQI 107 F + + + + + F I+ ++I++ I + +R + Sbjct: 140 DIGFFRKHSHDLVPLTSFFTTDPEIDRVLIKVRDILRKNHVPAYDEIHNKGEVRYLEVRR 199 Query: 108 DYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR-DY 166 T + +V L+ +E + + + L KT + L + DY Sbjct: 200 SKATG---EIMVILVCLHKDFPQLKEVTKEISEIKG--VTSVVLNHNPKKTNVILGKKDY 254 Query: 167 V---DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGN 222 + + ++T + ++ SF Q N+ + + + D+ ++ Y G G Sbjct: 255 LLWGEPQITDKIGDVSFKISPQSFFQINSLQTPRLYDLAIQKADLKPDDVVIDAYSGIGT 314 Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282 L +A+H V +E+ +P+VE A N N + N + V ++E +E Sbjct: 315 IGLSVAKHVKAVRGMEVIEPAVEDANANAKLNGITNAEYVVGKAEEVMPRWAKE------ 368 Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STTH 339 + IFVDPPR GL + I+YISCNP ++ RDL + + Sbjct: 369 ------GLKTDVIFVDPPRKGLTPEFIDAAVETNPKKIVYISCNPATMVRDLQLFKEQGY 422 Query: 340 TIERLALFDQFPYTRHMECGVLLVR 364 + + D FP T H+E +L R Sbjct: 423 DFDEIDPVDMFPQTPHVESVTVLER 447 >gi|312864156|ref|ZP_07724390.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus vestibularis F0396] gi|311100157|gb|EFQ58366.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus vestibularis F0396] Length = 451 Score = 272 bits (696), Expect = 5e-71, Method: Composition-based stats. Identities = 83/386 (21%), Positives = 150/386 (38%), Gaps = 38/386 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54 L+ +Y++QL K D L Q + F+ N + I +P HYR + +F Sbjct: 81 GCQLMHLRYDKQLEFKTDLLGQALKKFKPANFESYEIRPTIGMEQPQHYRAKLQFQTRSF 140 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIE---MMATIRLEPLLRAKLFQIDYLT 111 G + +F + + + ID + L A+M + ++ +L K+ I + Sbjct: 141 GGSVKAGLFAEGSHRLINIDDCLVQDELTQAMMNKVTSLLDKYKLPIYNERKISGIRTVM 200 Query: 112 SQ----SDQAIVTLIYHRL--LDDAWRECAIRLRDALH---ARKYQIQLIGRANKTKICL 162 + S+Q + + + L +E +R + + Y +T+I Sbjct: 201 IRRALGSNQVQLIFVTSKSVSLTKLVKELTLRYPEIVTVAINYNYSKSSEIYGQETEIIW 260 Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNG 221 +D + E + L +F Q N + + A L++ YCG G Sbjct: 261 GQDTIQEEVLDYNFAL----SPRAFYQLNPKQTEVLYSQAVEALEVDKDEHLIDAYCGVG 316 Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281 L + ++I ++E AR N + + N +++ +E Sbjct: 317 TIGLAFVNKVKSIRGMDIIPEAIEDARKNAKSLGLGNTHYEVGKAEDIIPRWYKE----- 371 Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTTH 339 YR + VDPPR+GLDD + + Y ++Y+SCN +L RDL L+ + Sbjct: 372 -------GYRADALIVDPPRTGLDDKLLKTILEYTPKKMVYVSCNVSTLARDLVSLAKVY 424 Query: 340 TIERLALFDQFPYTRHMECGVLLVRK 365 + + D FP+T E V L +K Sbjct: 425 DVNYIQSVDMFPHTARTEAVVKLTKK 450 >gi|291545409|emb|CBL18517.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Ruminococcus sp. SR1/5] Length = 390 Score = 272 bits (696), Expect = 6e-71, Method: Composition-based stats. Identities = 74/380 (19%), Positives = 149/380 (39%), Gaps = 42/380 (11%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHD-GDDLYHIMFDQQT 67 Y++QL K ++ F I +P +YR + D ++ ++++++ Sbjct: 23 SYQEQLRRKQRITEGLLKKFGKVEPIIGMEDPYYYRNKVHAAFGRDRKGNVISGIYEEKS 82 Query: 68 KERMRIDYFMPGSLLINAL-----------MIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116 + +D M + I+ LLR L + + T + Sbjct: 83 HRIVSVDDCMIEDKKSQEIIRTIRGMLKSFKIKTYDEDTGYGLLRHVLVRRGFSTGEIMV 142 Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGR-------ANKTKICLDRDYVDE 169 +VT+ + + LR + + ++ + ++ + Sbjct: 143 VLVTV---SPIFPSKNNFVKALRKEYPEITTVVLNVNDRQTSMVLGDRNIVLYGPGFIKD 199 Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNFSLVLA 228 RL L +R +SF Q N + + A + +++ YCG G ++ + Sbjct: 200 RLM----GLTFRISPSSFYQVNPVQTEVLYGKAMEFAAMTGKERVIDAYCGTGTIGIIAS 255 Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288 + V+ VE+ + ++ AR N N + NV+ V + F + M E E Sbjct: 256 GNARDVIGVELNRDAIRDARMNARENKIRNVRFVPGDAGWFMEGMAAEGE---------- 305 Query: 289 SYRFKTIFVDPPRSGLDDATVG--MVQAYPHILYISCNPDSLCRDLSILSTT-HTIERLA 345 + + + +DPPRSG D + + + I+Y+SCNP++L RDL+ L+ + ++++ Sbjct: 306 --KVEVVLMDPPRSGSDRKFLHSLLTLSPEKIVYVSCNPETLARDLACLTKRDYLVKKMQ 363 Query: 346 LFDQFPYTRHMECGVLLVRK 365 D FP T +E LL + Sbjct: 364 PVDMFPLTDSVEVVCLLENR 383 >gi|270291082|ref|ZP_06197305.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Pediococcus acidilactici 7_4] gi|270280478|gb|EFA26313.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Pediococcus acidilactici 7_4] Length = 455 Score = 272 bits (696), Expect = 6e-71, Method: Composition-based stats. Identities = 72/378 (19%), Positives = 147/378 (38%), Gaps = 39/378 (10%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ 65 Y QL K +++ ++ + +++ P YR +A+ + L F + Sbjct: 93 YPAQLKFKQTQIKNLLQKSHLEQIEVAETVGMENPTGYRNKAQVPVRKVKGQLATGFFKR 152 Query: 66 QTKERMRIDYFMPGSLLINA-----------LMIEMMATIRLEPLLRAKLFQIDYLTSQS 114 + + + I+ F +I+ IE I ++R + + + + Sbjct: 153 GSHDLVPIEDFYIQDPVIDQVILKVRDILREYQIEPYDEINQRGVVRNIMVRRGRRSGEI 212 Query: 115 DQAIVTLIYHRLLDDAWRECAIRL---RDALHARKYQIQLIGRANKTKICLDRDYVDERL 171 ++T D E ++ + + + + ++ + + L Sbjct: 213 MVVLITRTSSVPHLDEIAEAIHQIDGVVSVIQNINPKQTNVIMGKEDRLLAGESVIHDEL 272 Query: 172 TVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNFSLVLARH 230 + +SF Q N + + + A + +L++Y G G SL +A+ Sbjct: 273 L----GQKFIISAHSFYQVNPVQTEKLYQLAIKKAGLTGKETVLDVYSGIGTISLAMAQA 328 Query: 231 FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY 290 +V VEI K +V+ A+ N N NVK V +++ + E Sbjct: 329 AKKVYGVEIVKEAVQDAKVNAVQNQAKNVKFVVGKAEDQMAKWQAE------------GM 376 Query: 291 RFKTIFVDPPRSGLDDATVGM--VQAYPHILYISCNPDSLCRDLSIL-STTHTIER-LAL 346 + + VDPPR GLD++ + A ++Y+SCNP +L RD+ + + +++ + Sbjct: 377 QPDVVVVDPPRKGLDESVIDATVAMAPKRVVYVSCNPATLVRDIDRFQAQGYKVDQPITP 436 Query: 347 FDQFPYTRHMECGVLLVR 364 DQFP T H+E ++ R Sbjct: 437 VDQFPQTPHVESVTVMSR 454 >gi|227550544|ref|ZP_03980593.1| tRNA (uracil-5-)-methyltransferase [Enterococcus faecium TX1330] gi|257897054|ref|ZP_05676707.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium Com12] gi|293378745|ref|ZP_06624903.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium PC4.1] gi|227180445|gb|EEI61417.1| tRNA (uracil-5-)-methyltransferase [Enterococcus faecium TX1330] gi|257833619|gb|EEV60040.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium Com12] gi|292642673|gb|EFF60825.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium PC4.1] Length = 460 Score = 272 bits (696), Expect = 6e-71, Method: Composition-based stats. Identities = 78/390 (20%), Positives = 146/390 (37%), Gaps = 43/390 (11%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN-------LQIFRSEPIHYRMRAEFHIWHD 54 L Y+ QL K D L Q + F+ I +P HYR +A+F + + Sbjct: 84 GCQLQHLAYQAQLDFKKDLLLQALEKFKPAGFRSYQLLPTIGMDDPWHYRNKAQFQLRKN 143 Query: 55 GD--DLYHIMFDQQTKERMRIDYFMPG-----------SLLINALMIEMMATIRLEPLLR 101 +++ + + + I + L+N + + R Sbjct: 144 KQTQKTEAGLYEANSHQLVPITDCLVQEPRTQKVMNTVVQLLNKFDAPIYDERTNSGIFR 203 Query: 102 AKLFQIDYLTSQSDQAIVTLIYHRLLDDAW-RECAIRLRD---ALHARKYQIQLIGRANK 157 + +I T + +T +A RE RL + + + Q + ++ Sbjct: 204 TIMVRIGVKTGELQVVFITRSKKFPQKNAMIREINERLPEVVSIMQNVQAQKTSLVMGDE 263 Query: 158 TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLEL 216 T ++ ++E++ + + +F Q N + E + A +++ Sbjct: 264 TIHVWGKEAIEEQI----NEVTFDLSPRAFFQLNPQQTELLYGEGIKALDAQPDETIVDA 319 Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276 YCG G L +A+ V ++ ++ A+ N +N + ++++ E Sbjct: 320 YCGVGTIGLSVAKKVKEVRGMDTVPQAIADAKRNAERLGYHNTRYEVGTAEQVLPKWLNE 379 Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSI 334 ++ I VDPPR+GLD+A + + +P ++YISCN +L RDL Sbjct: 380 ------------GFQPDGIIVDPPRTGLDNALIQSLLKFPPKKLVYISCNVSTLARDLVH 427 Query: 335 LSTTHTIERLALFDQFPYTRHMECGVLLVR 364 LS +E L D FP T E V + R Sbjct: 428 LSKKFNVEYLQSVDMFPQTARCEVVVKMTR 457 >gi|257888569|ref|ZP_05668222.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium 1,141,733] gi|257824623|gb|EEV51555.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium 1,141,733] Length = 460 Score = 272 bits (696), Expect = 6e-71, Method: Composition-based stats. Identities = 78/390 (20%), Positives = 146/390 (37%), Gaps = 43/390 (11%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN-------LQIFRSEPIHYRMRAEFHIWHD 54 L Y+ QL K D L Q + F+ I +P HYR +A+F + + Sbjct: 84 GCQLQHLAYQAQLDFKKDLLLQALEKFKPAGFRSYQLLPTIGMDDPWHYRNKAQFQLRKN 143 Query: 55 GD--DLYHIMFDQQTKERMRIDYFMPG-----------SLLINALMIEMMATIRLEPLLR 101 +++ + + + I + L+N + + R Sbjct: 144 KQTQKTEAGLYEANSHQLVPITDCLVQEPRTQKVMNTVVQLLNKFDAPIYDERTNSGIFR 203 Query: 102 AKLFQIDYLTSQSDQAIVTLIYHRLLDDAW-RECAIRLRD---ALHARKYQIQLIGRANK 157 + +I T + +T +A RE RL + + + Q + ++ Sbjct: 204 TIMVRIGVKTGELQVVFITRSKKFPQKNAMIREINERLPEVVSIMQNVQAQKTSLVMGDE 263 Query: 158 TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLEL 216 T ++ ++E++ + + +F Q N + E + A +++ Sbjct: 264 TIHVWGKEAIEEQI----NEVTFDLSPRAFFQLNPQQTELLYGEGIKALGAQPDETIVDA 319 Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276 YCG G L +A+ V ++ ++ A+ N +N + ++++ E Sbjct: 320 YCGVGTIGLSVAKKVKEVRGMDTVPQAIADAKRNAERLGYHNTRYEVGTAEQVLPKWLNE 379 Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSI 334 ++ I VDPPR+GLD+A + + +P ++YISCN +L RDL Sbjct: 380 ------------GFQPDGIIVDPPRTGLDNALIQSLLKFPPKKLVYISCNVSTLARDLVH 427 Query: 335 LSTTHTIERLALFDQFPYTRHMECGVLLVR 364 LS +E L D FP T E V + R Sbjct: 428 LSKKFNVEYLQSVDMFPQTARCEVVVKMTR 457 >gi|327474823|gb|EGF20228.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis SK408] Length = 469 Score = 272 bits (696), Expect = 6e-71, Method: Composition-based stats. Identities = 75/384 (19%), Positives = 152/384 (39%), Gaps = 40/384 (10%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQV-----PNLQIFRSEPIHYRMRAEFHIWHDGDDLY 59 L Y QL K +++ + + +P+ YR +A+ + L Sbjct: 96 LGHLNYPAQLDFKRKQVKDSLYKIAGLSDVEVPPTLGMEQPLGYRNKAQVPVRRVNGQLE 155 Query: 60 HIMFDQQTKERMRIDYFMPGSLLINALMI---EMMATIRLEP--------LLRAKLFQID 108 F + + + + I+ F +I+ +++ +++ L+P L+R + + Sbjct: 156 TGFFRKNSHDLLPIEDFYIQDPVIDQVILFTRDLLRRFDLKPYDEQEKTGLIRNLVVRRG 215 Query: 109 YLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR 164 + + +VT + L + E ++ + Q + + Sbjct: 216 HYLGEIMVILVTTRPKIFRVERLMEHLTEAFPAIKSIMQNINDQPGNAIFGKDWRTLYGQ 275 Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNF 223 DY+ +++ ++ +F Q N + + + + ++ D+ L+ Y G G Sbjct: 276 DYITDQMLGND----FQIAAPAFYQVNTEMAEKLYQTAIDFSELTADDVVLDAYSGIGTI 331 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 L +A+ +V VE+ +VE +R N N + N V ++E Q +E Sbjct: 332 GLSVAKQVKQVYGVEVIPEAVENSRKNAEINDITNASYVCAPAEEAIQNWLKE------- 384 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGM-VQAYP-HILYISCNPDSLCRDLSILST-THT 340 + I VDPPR GL ++ + + P I YISCN ++ RD+ + + Sbjct: 385 -----GIQADVILVDPPRKGLTESFIKASISMEPKKITYISCNVATMARDIKLYQELGYE 439 Query: 341 IERLALFDQFPYTRHMECGVLLVR 364 ++++ D FP T H+E LLVR Sbjct: 440 LKKVQPVDLFPQTHHVEAVSLLVR 463 >gi|313904355|ref|ZP_07837733.1| RNA methyltransferase, TrmA family [Eubacterium cellulosolvens 6] gi|313470905|gb|EFR66229.1| RNA methyltransferase, TrmA family [Eubacterium cellulosolvens 6] Length = 490 Score = 272 bits (696), Expect = 6e-71, Method: Composition-based stats. Identities = 75/407 (18%), Positives = 146/407 (35%), Gaps = 56/407 (13%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----------------------VPNLQIFRS 38 L YE +L K +++R + + Sbjct: 92 GCQLQHMTYEAELQLKENKVRNDLERIGGIVTERRTADAGSEDQADRTGNVRMEPIVGMD 151 Query: 39 EPIHYRMRAEFHIWHDG-DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLE 97 YR +A+F I DG + + + + + G ++ ++ ++ + Sbjct: 152 VNRRYRNKAQFPIGEDGQGNPVAGFYAGHSHRIIPCEDCQLGVEENREILRAVLDWMKEQ 211 Query: 98 -----------PLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALH--- 143 ++R L + + T + ++ DA + L+ + Sbjct: 212 RVAAYNEETGKGIVRHVLIRKGFATGEIIVCLIINARELPRKDALIDRLSVLKGMVGITI 271 Query: 144 ARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTL--IYRQIENSFTQPNAGINVHMLEW 201 + + + + R +++ L + Y SF Q N + + Sbjct: 272 SSNTKKTNVIMNAPVRTIWGRGEIEDILRSEAFGVQVRYSISPASFYQVNPVQTEKIYQK 331 Query: 202 VLA-ATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK 260 VL A +++LYCG G SL LA +V+ VEI ++E A+ N A N + N + Sbjct: 332 VLELADLSGTETVMDLYCGIGTISLFLAAKAAKVIGVEIVPEAIEDAKKNAAMNGIENAE 391 Query: 261 IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHI 318 ++E A+ + + VDPPR G D + + + Sbjct: 392 FYVGKAEEVVPALYA------------KGAKADVVVVDPPRKGCDQKLLDTILQMDPGRL 439 Query: 319 LYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364 +Y+SC+P +L RDL L+ + ++ + +DQF +T H+E LL + Sbjct: 440 VYVSCDPATLARDLKFLTANGYELKYVQPYDQFCHTVHVETCCLLEK 486 >gi|325696032|gb|EGD37923.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis SK160] Length = 465 Score = 272 bits (695), Expect = 6e-71, Method: Composition-based stats. Identities = 75/385 (19%), Positives = 158/385 (41%), Gaps = 40/385 (10%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAF-QVPNLQI----FRSEPIHYRMRAEFHIWHDGDDLY 59 L Y QL K +++ + + ++++ +P+ YR +A+ + L Sbjct: 96 LGHLNYSAQLDFKRKQVKDSLYKIAGLSDVEVLPTLGMEQPLGYRNKAQVPVRRVNGQLE 155 Query: 60 HIMFDQQTKERMRIDYFMPGSLLINALMI---EMMATIRLEP--------LLRAKLFQID 108 F + + + + I+ F +I+ +++ +++ L+P L+R + + Sbjct: 156 TGFFRKNSHDLLPIEDFYIQDPVIDQVILFTRDLLRRFDLKPYDEQEKTGLIRNLVVRRG 215 Query: 109 YLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR 164 + + +VT + L + E ++ + Q + + Sbjct: 216 HYLGEIMVILVTTRPKIFRVERLMEHLTEAFPAIKSIMQNINDQPGNAIFGKDWRTLYGQ 275 Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNF 223 DY+ +++ ++ +F Q N + + + + ++ D+ L+ Y G G Sbjct: 276 DYITDQMLGND----FQIAAPAFYQVNTEMAEKLYQTAIDFSELTADDVVLDAYSGIGTI 331 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 L +A+ +V VE+ +VE +R N N + N V ++E Q +E Sbjct: 332 GLSVAKQVKQVYGVEVIPEAVENSRKNAEINDITNASYVCAPAEEAIQNWLKE------- 384 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGM-VQAYP-HILYISCNPDSLCRDLSILST-THT 340 + I VDPPR GL ++ + + P I YISCN ++ RD+ + + Sbjct: 385 -----GIQADVILVDPPRKGLTESFIKASISMEPKKITYISCNVATMSRDIKLYQELGYE 439 Query: 341 IERLALFDQFPYTRHMECGVLLVRK 365 ++++ D FP T H+EC LLV++ Sbjct: 440 LKKVQPVDLFPQTHHVECVSLLVKR 464 >gi|241896472|ref|ZP_04783768.1| TrmA family tRNA (uracil-5-)-methyltransferase [Weissella paramesenteroides ATCC 33313] gi|241870194|gb|EER73945.1| TrmA family tRNA (uracil-5-)-methyltransferase [Weissella paramesenteroides ATCC 33313] Length = 469 Score = 272 bits (695), Expect = 7e-71, Method: Composition-based stats. Identities = 90/383 (23%), Positives = 151/383 (39%), Gaps = 39/383 (10%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQV---PNLQIFRSEPIHYRMRAEFHIWHDGDDLYHI 61 L +Y+ QL K ++ ++ + I P YR +A+ L Sbjct: 102 LAHLKYDAQLKFKQQQIAELFSKQHIDVNVAPTIGMENPTGYRNKAQIPAREIKGQLTTG 161 Query: 62 MFDQQTKERMRIDYFMPGSLLINA-----------LMIEMMATIRLEPLLRAKLFQIDYL 110 F + + M I+ F I+ + I + ++R + + Y Sbjct: 162 FFRRGSHRLMPIEDFYIQDPEIDKAIVIIRDILRKFHVPAYDEIHHKGVIRNIMVRRGYY 221 Query: 111 TSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDER 170 S + +V L+ ++++ L IQ + + I D ++V Sbjct: 222 ---SHEMMVVLVTRSKRIPGANIIIPQIKEVLPEVTSIIQNVNQDKTNVILGDVNHVLWG 278 Query: 171 LTVAGRTL---IYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSL 225 V TL + NSF Q N +L + A + G+ +++ Y G G SL Sbjct: 279 NKVIKDTLFDKTFAIGPNSFYQVNP-QTTEILYKLAADKAELTGNETVIDAYSGIGTISL 337 Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285 +A VL VE+ +V+ A+ N N+V+NVK ++E A +++ Sbjct: 338 TIADKVKSVLGVEVVPGAVDDAKRNADLNNVHNVKFELGKAEEKMVAWQQD--------- 388 Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILST-THTIE 342 + IFVDPPR GL + A I+YISCNP +L RD++ +TI+ Sbjct: 389 ---GLKPDVIFVDPPRKGLTTELIDAASAMAPSKIVYISCNPATLVRDVAQFKENGYTIK 445 Query: 343 -RLALFDQFPYTRHMECGVLLVR 364 + DQFP T H+E +L R Sbjct: 446 GDVQPVDQFPQTTHIESVTVLER 468 >gi|225870131|ref|YP_002746078.1| RNA methyltransferase [Streptococcus equi subsp. equi 4047] gi|225699535|emb|CAW93112.1| putative RNA methyltransferase [Streptococcus equi subsp. equi 4047] Length = 543 Score = 272 bits (695), Expect = 8e-71, Method: Composition-based stats. Identities = 81/379 (21%), Positives = 135/379 (35%), Gaps = 40/379 (10%) Query: 10 YEQQLAEKVDRLRQMMLAFQV-----PNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 Y QQL K +++ + I P YR +A+ + L F Sbjct: 88 YPQQLLFKQKQVQDSLYKIAGISNVEVKETIGMEYPYAYRNKAQVPVRRVNGQLETGFFR 147 Query: 65 QQTKERMRIDYFMPGSLLINAL-----------MIEMMATIRLEPLLRAKLFQIDYLTSQ 113 + + E + I F I+ L I+ L+R + + + + + Sbjct: 148 KHSHELVPISDFYIQDKEIDRLIAFTRDLLRRFDIKPYDEKEQSGLIRHLVVRRGHYSGE 207 Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD----RDYVDE 169 +VT R + L A +Q I T + R Y E Sbjct: 208 IMLVLVT---TRPKIFRINQMIDSLVAEFPAITSILQNIND-KPTNVIFGKAFTRLYGKE 263 Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLA 228 +T Y SF Q N + + + + ++ D+ ++ Y G G L A Sbjct: 264 TITDTILGNQYCISAQSFYQVNTTMAEKLYQTAIDFSELTADDVVIDAYSGIGTIGLSFA 323 Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288 + V VE+ + +V A N A N + N V S++ +E Sbjct: 324 KEVKAVYGVEVIEAAVRDAEKNAALNGITNAYYVADSAENAMANWCQE------------ 371 Query: 289 SYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILST-THTIERLA 345 + I VDPPR GL ++ + A I YISCNP ++ RD+ + ++++ Sbjct: 372 GIKPTVIIVDPPRKGLTESFIKASAAMQPDKITYISCNPATMARDIKRYEELGYKLQKVQ 431 Query: 346 LFDQFPYTRHMECGVLLVR 364 D FP T H+E LL + Sbjct: 432 PVDLFPMTHHVETVALLSK 450 >gi|302871091|ref|YP_003839727.1| RNA methyltransferase, TrmA family [Caldicellulosiruptor obsidiansis OB47] gi|302573950|gb|ADL41741.1| RNA methyltransferase, TrmA family [Caldicellulosiruptor obsidiansis OB47] Length = 442 Score = 271 bits (694), Expect = 8e-71, Method: Composition-based stats. Identities = 80/386 (20%), Positives = 162/386 (41%), Gaps = 40/386 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWHDGDD 57 L+ +Y+ QL+ K + N +I +P YR + + D + Sbjct: 71 GCHLMHAKYQYQLSLKKLLVEDAFRRIGKLNPRINDVIGMEKPFRYRNKTALPVGEDYKN 130 Query: 58 LYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLFQ 106 + + T + + IDY + LI IE+ + + + +LR + + Sbjct: 131 PQIGFYKKMTHDIVDIDYCLIQHEVCDDVIKGMKDLIRKYNIEVYSEKKHQGVLRHIVVR 190 Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD- 165 + ++ ++ L+ ++ +D L + + + L +T + L + Sbjct: 191 NSFA---FNEMMLILVCTKVPEDLENIKKDILNKFPNIKSLYVNLNP--KRTNVILGEED 245 Query: 166 ---YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNG 221 + + LI+ SF Q N+ + V+ + I +++ ++Y G G Sbjct: 246 ILIWGSNTIKDKIGNLIFEISPKSFFQVNSIQTELLYNQVVKYLRNIDAEVVFDVYSGIG 305 Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281 S+ +A +V ++EI + +VE A+ + N ++N++ + +++ Sbjct: 306 TISMFVAPFCKKVYSIEIVEDAVEDAKKSSKNNGISNIEFICANAE------------IE 353 Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILS-TT 338 + + + + +DPPRSG + A + + Q P+I+Y+SCNP +L RD SIL Sbjct: 354 IPKLMEKGIIPQVVILDPPRSGCEKALLESLIKQKIPNIIYVSCNPSTLARDSSILCSNG 413 Query: 339 HTIERLALFDQFPYTRHMECGVLLVR 364 + I + D FP T H+EC VL+ R Sbjct: 414 YEIVEVQPVDMFPQTFHVECVVLMSR 439 >gi|225868865|ref|YP_002744813.1| RNA methyltransferase [Streptococcus equi subsp. zooepidemicus] gi|225702141|emb|CAW99828.1| putative RNA methyltransferase [Streptococcus equi subsp. zooepidemicus] Length = 543 Score = 271 bits (694), Expect = 9e-71, Method: Composition-based stats. Identities = 82/385 (21%), Positives = 136/385 (35%), Gaps = 40/385 (10%) Query: 10 YEQQLAEKVDRLRQMMLAFQV-----PNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 Y QQL K +++ + I P YR +A+ + L F Sbjct: 88 YPQQLLFKQKQVQDSLYKIAGISNVEVKETIGMEYPYAYRNKAQVPVRRVNGQLETGFFR 147 Query: 65 QQTKERMRIDYFMPGSLLINAL-----------MIEMMATIRLEPLLRAKLFQIDYLTSQ 113 + + E + I F I+ L I+ L+R + + + + + Sbjct: 148 KHSHELVPISDFYIQDKEIDRLIAFTRDLLRRFDIKPYDEKEQSGLIRHLVVRRGHYSGE 207 Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD----RDYVDE 169 +VT R + L A +Q I T + R Y E Sbjct: 208 IMLVLVT---TRPKVFRINQMIDSLVAEFPAITSILQNIND-KPTNVIFGKAFTRLYGKE 263 Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLA 228 +T Y SF Q N + + + + ++ D+ ++ Y G G L A Sbjct: 264 TITDTILGNQYCISAQSFYQVNTTMAEKLYQTAIDFSELTADDVVIDAYSGIGTIGLSFA 323 Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288 + V VE+ + +V A N A N + N V S++ +E Sbjct: 324 KEVKAVYGVEVIEAAVRDAEKNAALNGITNAYYVADSAENAMANWCQE------------ 371 Query: 289 SYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILST-THTIERLA 345 + I VDPPR GL ++ + A I YISCNP ++ RD+ + ++++ Sbjct: 372 GIKPTVIIVDPPRKGLTESFIKASAAMQPDKITYISCNPATMARDIKRYEELGYKLQKVQ 431 Query: 346 LFDQFPYTRHMECGVLLVRKPSGWH 370 D FP T H+E LL + H Sbjct: 432 PVDLFPMTHHVETVTLLSKLNVDKH 456 >gi|126649520|ref|ZP_01721761.1| RNA methyltransferase, TrmA family protein [Bacillus sp. B14905] gi|126593845|gb|EAZ87768.1| RNA methyltransferase, TrmA family protein [Bacillus sp. B14905] Length = 465 Score = 271 bits (694), Expect = 9e-71, Method: Composition-based stats. Identities = 87/389 (22%), Positives = 153/389 (39%), Gaps = 41/389 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54 L YE+QL+EK D + Q + + P + + P HYR +++F + + Sbjct: 88 GCQLQHMTYEKQLSEKRDIVIQALERYAKPLAETVEVRKTLGMDNPWHYRNKSQFQVRKE 147 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGS-----------LLINALMIEMMATIRLEPLLRAK 103 G +Y +F + + + + I+ + ++ L I + L+ L+R Sbjct: 148 GKRVYAGLFVEGSNKLLNINDCLVQHPVTSKVTVATRKILQKLNITIYDGRTLDGLVRTI 207 Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD 163 + + T ++ +VT R E R++ + Q I R KT + Sbjct: 208 VVRTGIRTGETQVVLVT---TRKEIPHLAELITRIKKIDPSIVSIAQNINR-EKTSLIFG 263 Query: 164 RDYV----DERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYC 218 + + E + L + +F Q N VH+ E AA + +++ YC Sbjct: 264 DETIVLDGKETIHEELGELAFDLSARAFFQLNPTQTVHLYNEIKKAAALTGKESIVDAYC 323 Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278 G G L LA V +++ S++ AR N + + K +++ R+E Sbjct: 324 GVGTVGLWLADQAQEVRGMDVIPESIQDARKNARNHGFKHTKYAVGTAESVLAKWRKE-- 381 Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILS 336 + I VDPPR+GL + V +Y SCNP +L +DL LS Sbjct: 382 ----------GFTPDVITVDPPRTGLAPEFIQTVLKLKPKRFVYTSCNPSTLAKDLQQLS 431 Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVRK 365 + +E + D F T +EC +V K Sbjct: 432 KLYHVEYIQPVDMFSQTAQVECVCSMVLK 460 >gi|291562935|emb|CBL41751.1| 23S rRNA m(5)U-1939 methyltransferase [butyrate-producing bacterium SS3/4] Length = 475 Score = 271 bits (694), Expect = 9e-71, Method: Composition-based stats. Identities = 84/407 (20%), Positives = 144/407 (35%), Gaps = 60/407 (14%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ---------------------VPNLQIFRSEP 40 L Y++QL K ++ + V I +P Sbjct: 81 GCQLQELDYKEQLKFKEKKVYNHLKRIGGMENLFLPEEAEQAEGVQDAVVMEPIIGMEDP 140 Query: 41 IHYRMRAEFHIWH-DGDDLYHIMFDQQTKERMRI-------------DYFMPGSLLINAL 86 YR +A++ I F +T + + DY + Sbjct: 141 WRYRNKAQYPIGRGKDGKPTAGFFAGRTHSLIPVPELDCLLGCLENKDYLAAVLKFMEDF 200 Query: 87 MIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARK 146 +E + L+R L + + + + +V I + L +E RL + Sbjct: 201 GVEPYDEANHKGLVRHVLLRKGFASGEHMVCLV--INGKKL-PHEKEFIERLHE---TGA 254 Query: 147 YQIQLIGRANKTKICLDRD----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWV 202 I L KT + L + Y +T + YR SF Q N + Sbjct: 255 DSISLSFNMEKTNVILGTEIKNLYGPGYITDKIGNIEYRISPLSFYQVNPVQTERLYGTA 314 Query: 203 LAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261 L G+ + +LYCG G S LA+ +V VEI ++E AR N N ++NV+ Sbjct: 315 LEFADLNGGETVWDLYCGIGTISSFLAQKAGKVCGVEIIPAAIEDARENAKRNGLDNVEF 374 Query: 262 VRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHIL 319 ++E + + + I VDPPR G D+ + + A ++ Sbjct: 375 FVGKAEEVLPEQYEK-----------NHIKADVIVVDPPRKGCDELCLETIVKMAPEKVV 423 Query: 320 YISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVRK 365 Y+SC+ +L RD+ + ++R+ D F + H+E LL +K Sbjct: 424 YVSCDSSTLARDVKYFGENGYAVKRVRTVDMFGMSGHVETVALLTKK 470 >gi|315222549|ref|ZP_07864438.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus anginosus F0211] gi|315188235|gb|EFU21961.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus anginosus F0211] Length = 453 Score = 271 bits (694), Expect = 9e-71, Method: Composition-based stats. Identities = 77/387 (19%), Positives = 157/387 (40%), Gaps = 40/387 (10%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQ-VPNLQI----FRSEPIHYRMRAEFHIWHDGDDLY 59 L +Y +QL K ++R + + ++++ P+HYR +A+ + L Sbjct: 83 LGHLKYSEQLKFKTKKVRDNLYKIAEIADIEVAPTLGMDHPLHYRNKAQVPVRRVNGQLE 142 Query: 60 HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIR-----------LEPLLRAKLFQID 108 F + + + M I+ F +I+ +++ + +R L+R + + Sbjct: 143 TGFFRKNSHDLMPIEDFYIQDSVIDQVVLAVRDLLRRFDLKPYDEKEQSGLIRNIVVRRG 202 Query: 109 YLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR 164 + + + +VT + L + ++ + Q + + + Sbjct: 203 HYSGEIMVILVTTRPKIFRVNQLIEQLVVRFPNIKSIMQNINDQSGNAIFGKEFHVLYGQ 262 Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNF 223 DY+ +R+ ++ +F Q N + + + + + D +++ Y G G Sbjct: 263 DYITDRMLDND----FQIAAPAFYQVNTEMAEKLYQTAIDFAELSTEDIVVDAYSGIGTI 318 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 L +A+H V VE+ +VE ++ N N ++N V S++ N +K Sbjct: 319 GLSVAKHVKEVYGVEVIPQAVENSKKNAELNSISNAHYVCDSAE------------NAIK 366 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCRDLSILST-THT 340 + I VDPPR GL ++ + V P I+YISCN ++ RD+ + + Sbjct: 367 KWLNQGIKPSVIMVDPPRKGLTESFIKSSVSMNPKKIIYISCNVATMARDIKLYQELGYK 426 Query: 341 IERLALFDQFPYTRHMECGVLLVRKPS 367 + ++ D FP T H+EC L+ R S Sbjct: 427 LTKVQPVDLFPMTHHVECIALIQRVKS 453 >gi|291527662|emb|CBK93248.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Eubacterium rectale M104/1] Length = 418 Score = 271 bits (694), Expect = 9e-71, Method: Composition-based stats. Identities = 77/375 (20%), Positives = 149/375 (39%), Gaps = 34/375 (9%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDG-DDLYHIMFDQQT 67 +Y++QL K +++++ F + P++YR + + + + T Sbjct: 59 EYKEQLKTKQAYMKKLLKPFCFVEPIVGMKNPLYYRHKVHAAFDCTRRGQIVAGAYRKNT 118 Query: 68 KERMRIDYFMP----GSLLINAL-------MIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116 + + I+ M +I + I+ LLR L + Y T Q Sbjct: 119 HDVVDIESCMIEEQESDEIIRDIKDMLRSFRIKTYDEDTGYGLLRHVLVRKGYATG---Q 175 Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD---YVDERLTV 173 +V L+ + + LR + + + + DR+ Y + Sbjct: 176 IMVVLVLASPILPSKNNFVKALRKKHPNITTVVLNVNDKRTSMVLGDRNITLYGKGFIED 235 Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELYCGNGNFSLVLARHFD 232 +R SF Q N + E + A + +++ YCG G ++ A++ Sbjct: 236 KLCGCTFRISPGSFYQVNPVQTELLYEKAIHEAHLTGKERVIDAYCGTGTIGIIAAKNAG 295 Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292 V+ VE+ + ++ A N N + N++ + +F M + + Sbjct: 296 EVIGVELNRDAIRDAVINAKRNDIRNIRFYNDDAGKFMVEMAQ------------KGEKA 343 Query: 293 KTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST-THTIERLALFDQ 349 + +DPPR+G D+A + V + ++Y+SC P++L RDL L+ + ++R +D Sbjct: 344 DVVIMDPPRTGSDEAFLSSVVKLSPERVVYVSCGPETLARDLKYLTKHGYAVKRATPYDC 403 Query: 350 FPYTRHMECGVLLVR 364 FPYT H+E VLL R Sbjct: 404 FPYTEHIETVVLLCR 418 >gi|116627537|ref|YP_820156.1| tRNA methyltransferase, TrmA family [Streptococcus thermophilus LMD-9] gi|116100814|gb|ABJ65960.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus thermophilus LMD-9] gi|312278056|gb|ADQ62713.1| 23S rRNA (Uracil-5-)-methyltransferase RumA [Streptococcus thermophilus ND03] Length = 453 Score = 271 bits (694), Expect = 9e-71, Method: Composition-based stats. Identities = 78/382 (20%), Positives = 151/382 (39%), Gaps = 40/382 (10%) Query: 7 IDQYEQQLAEKVDRLRQMMLAF-QVPNLQI----FRSEPIHYRMRAEFHIWHDGDDLYHI 61 Y +QL K ++ + + ++++ P YR +A+ + L Sbjct: 85 HMTYTEQLKFKRKQVVDNLYKTAGISDVEVAETLGMETPYAYRNKAQVPVRRVKGQLETG 144 Query: 62 MFDQQTKERMRIDYFMPGSLLINALMI---EMMATIRLEP--------LLRAKLFQIDYL 110 + + + + + I+ F+ I+ L++ +++ L+P L+R + + + Sbjct: 145 FYRKNSHDLIPIEDFLIQDKEIDKLIVFVRDLLRRYDLKPYDEKEQTGLIRHLVVRRGHY 204 Query: 111 TSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD----Y 166 + Q VT + + ++ +A + IQ I N T ++ Y Sbjct: 205 SGQMMLVFVT---TKPKVFRIDQVIAKITEAFPSIVSIIQNINDKN-TNAIFGKEFRTLY 260 Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATK-GIQGDLLELYCGNGNFSL 225 + +T + Y SF Q N + + + + + +++ Y G G L Sbjct: 261 GQDTITDSMLGNDYEISAQSFYQVNTEMAEKLYQIAIDFSDLNSDSIVIDAYSGIGTIGL 320 Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285 A+ V VE+ + +VE A+ N N + N V S++ N + Sbjct: 321 SFAKQVREVYGVEVIETAVEDAKKNAERNGITNAHYVANSAE------------NAMAKW 368 Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGM-VQAYP-HILYISCNPDSLCRDLSILST-THTIE 342 + I VDPPR GL ++ + V P I Y+SCNP ++ RD+ + ++ Sbjct: 369 SQDGIKPDVIIVDPPRKGLTESFIKASVAMQPEKITYVSCNPATMARDIKRYQELGYELK 428 Query: 343 RLALFDQFPYTRHMECGVLLVR 364 ++ D FP T H+EC LL R Sbjct: 429 KVQPVDLFPQTHHIECVGLLTR 450 >gi|224543217|ref|ZP_03683756.1| hypothetical protein CATMIT_02417 [Catenibacterium mitsuokai DSM 15897] gi|224523850|gb|EEF92955.1| hypothetical protein CATMIT_02417 [Catenibacterium mitsuokai DSM 15897] Length = 448 Score = 271 bits (694), Expect = 1e-70, Method: Composition-based stats. Identities = 80/386 (20%), Positives = 153/386 (39%), Gaps = 39/386 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWHDGDD 57 +L+ +Q + K +R+++ L +L++ +P HYR + + Sbjct: 79 GCSLMHMSDCEQQSFKTNRVKETFLKIAHQDLEVNDCLMDMDPYHYRNKVQVPFGKKDGH 138 Query: 58 LYHIMFDQQTKERMRIDYFMPGSLLINALMI---EMMATIRLEPLLR-AKLFQIDYLTSQ 113 + + +T + + DY + + N ++ E+ ++P + K I ++ ++ Sbjct: 139 IVSGFYKARTNDIINNDYCLIQNEFSNKVIKRIKELFEEYHIQPYDKITKSGNIKHVLTK 198 Query: 114 S----DQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGR-------ANKTKICL 162 + ++A+V I ++ E L + + IQ I + K+ Sbjct: 199 TSYHKNEAMVVFISYKKKIPHIHEIIDILTNEYPEIRTIIQNINPRHDNVILGEEEKVLY 258 Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNG 221 Y+++ L Y+ SF Q N + + K D+ ++ YCG G Sbjct: 259 GEGYIEDTLLGN----TYKISMKSFYQINPRQVEVLYSKAIEYAKFKPTDVVIDAYCGIG 314 Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281 SL LA+H +V VE+ ++ A+ N NH+ N + V + F E Sbjct: 315 TISLTLAKHVKKVYGVEVVPQAIVDAKENAERNHITNAEFVCDDAGHFMTEFVERNE--- 371 Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSIL-STT 338 + + VDPPR G + + + I+YISCN + RDL+ L Sbjct: 372 ---------KVDCVMVDPPRKGCSTEFLERLTTLSPERIVYISCNVATQARDLTYLVEKG 422 Query: 339 HTIERLALFDQFPYTRHMECGVLLVR 364 + + D FP+T H+E +LL + Sbjct: 423 YKPLNVQPVDMFPHTPHIENILLLSK 448 >gi|302392787|ref|YP_003828607.1| RNA methyltransferase, TrmA family [Acetohalobium arabaticum DSM 5501] gi|302204864|gb|ADL13542.1| RNA methyltransferase, TrmA family [Acetohalobium arabaticum DSM 5501] Length = 456 Score = 271 bits (694), Expect = 1e-70, Method: Composition-based stats. Identities = 75/387 (19%), Positives = 143/387 (36%), Gaps = 40/387 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVP-----NLQIFRSEPIHYRMRAEFHIWHDGD 56 L Y+ QL K + ++ + + P YR +A+F + + Sbjct: 85 GCQLQHIDYQAQLEYKQEMVKDNIERIGGLSDVDIKPVLGMEHPYFYRNKAQFPVGVKDE 144 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINAL-----------MIEMMATIRLEPLLRAKLF 105 D+ + + E + + + LIN + I + LLR + Sbjct: 145 DVVTGFYAPGSHEIIDTEECLIQHQLINRVISKAVELVEKHEISIYDEDSHSGLLRHLVV 204 Query: 106 QIDYLTSQSDQAIVTLIYHRL----LDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161 ++ T+Q+ V L + L + Q + KT Sbjct: 205 RVGVCTNQAMLVFVINGQRIPGQQRLAEELMAEIPELVSIQNNINRQKTNVILGAKTYSL 264 Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220 + + + ++ Y+ SF Q N + + +L A + +++ YCG Sbjct: 265 AGESKIIDYIG----SIRYQISAQSFFQVNTLQAKKLYDQILEYADLSGEETVVDAYCGI 320 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G+ SL LA+ +V +E+ +++ A+ N N+++N ++ ++ Sbjct: 321 GSISLYLAQAAKQVYGIEVVSQAIDDAKENAELNNIDNCYFKVGKVRKILPKLKS----- 375 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVG--MVQAYPHILYISCNPDSLCRDLSILSTT 338 + + I VDPPR G + + + I+Y+SC P SL RDL L+ Sbjct: 376 -------NGLNPEVIVVDPPRKGCHEEVLETFLELKPERIIYVSCKPSSLARDLEQLTAA 428 Query: 339 -HTIERLALFDQFPYTRHMECGVLLVR 364 + +E + D FP T H+E +VR Sbjct: 429 DYEVEEIQPVDMFPQTYHIEAVAKIVR 455 >gi|223986649|ref|ZP_03636641.1| hypothetical protein HOLDEFILI_03963 [Holdemania filiformis DSM 12042] gi|223961380|gb|EEF65900.1| hypothetical protein HOLDEFILI_03963 [Holdemania filiformis DSM 12042] Length = 453 Score = 271 bits (694), Expect = 1e-70, Method: Composition-based stats. Identities = 85/378 (22%), Positives = 148/378 (39%), Gaps = 30/378 (7%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWHDGD- 56 L I + E Q K R+ ++++ P +YR + + + + D Sbjct: 89 GCQLQIMEAELQAEFKRHRVADCFQRIGHLDVEVQPVLSMEFPWNYRNKVQVPVGVNRDG 148 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEP---LLRAKLFQIDYLTSQ 113 + + + + + D S L N ++ + + I LR L + + + Sbjct: 149 KVISGYYRSHSHDIVDFDECCLHSELENQILRSLRSWIEEAGDPAQLRHLLIKHAF---K 205 Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDE---R 170 + Q +V LI E RL A + I + I DR+ V Sbjct: 206 TGQVMVVLIAKSENLKGKDELIERLTAAYPQIRSIILNVNGREDNVILGDREIVLWGSAS 265 Query: 171 LTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNFSLVLAR 229 + L ++ SF Q N + + A + ++++YCG G L AR Sbjct: 266 IEEELLGLRFQISAKSFYQINPVQTEVLYTKAIELAGLTGEETVIDVYCGTGTIGLSAAR 325 Query: 230 HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHS 289 RV+ +EI +VE A+ N N + N + + + T + R Sbjct: 326 KAKRVIGIEIVPSAVEDAKRNAVRNGIANAEFICGDAGVCTAQLLERR------------ 373 Query: 290 YRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCRDLSIL-STTHTIERLAL 346 + VDPPR GLD T+ +V+ P I+Y+SC+P +L RD ++L + +E + Sbjct: 374 IQPDVAIVDPPRKGLDGTTIDSLVKMNPERIVYVSCDPATLARDCAVLNERGYGVEVVQP 433 Query: 347 FDQFPYTRHMECGVLLVR 364 D FP T H+E VL+ + Sbjct: 434 VDMFPQTTHVETVVLMSK 451 >gi|257898994|ref|ZP_05678647.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium Com15] gi|257836906|gb|EEV61980.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium Com15] Length = 460 Score = 271 bits (693), Expect = 1e-70, Method: Composition-based stats. Identities = 77/390 (19%), Positives = 146/390 (37%), Gaps = 43/390 (11%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN-------LQIFRSEPIHYRMRAEFHIWHD 54 L Y+ QL K D L Q + F+ I +P HYR +A+F + + Sbjct: 84 GCQLQHLAYQAQLDFKKDLLLQALEKFKPAGFRSYQLLPTIGMDDPWHYRNKAQFQLRKN 143 Query: 55 GD--DLYHIMFDQQTKERMRIDYFMPG-----------SLLINALMIEMMATIRLEPLLR 101 +++ + + + I + L+N + + R Sbjct: 144 KQTQKAEAGLYEANSHQLVPITDCLVQEPRTQKVMNTVVQLLNKFDAPIYDERTNSGIFR 203 Query: 102 AKLFQIDYLTSQSDQAIVTLIYHRLLDDAW-RECAIRLRD---ALHARKYQIQLIGRANK 157 + ++ T + +T +A RE RL + + + Q + ++ Sbjct: 204 TIMVRVGVKTGELQVVFITRSKKFPQKNAMIREINERLPEVVSIMQNVQAQKTSLVMGDE 263 Query: 158 TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLEL 216 T ++ ++E++ + + +F Q N + E + A +++ Sbjct: 264 TIHVWGKEAIEEQI----NEVTFDLSPRAFFQLNPQQTELLYGEGIKALDAQPDETIVDA 319 Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276 YCG G L +A+ V ++ ++ A+ N +N + ++++ E Sbjct: 320 YCGVGTIGLSVAKKVKEVRGMDTVPQAIADAKRNAERLGYHNTRYEVGTAEQVLPKWLNE 379 Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSI 334 ++ I VDPPR+GLD+A + + +P ++YISCN +L RDL Sbjct: 380 ------------GFQPDGIIVDPPRTGLDNALIQSLLKFPPKKLVYISCNVSTLARDLVH 427 Query: 335 LSTTHTIERLALFDQFPYTRHMECGVLLVR 364 LS +E L D FP T E V + R Sbjct: 428 LSKKFNVEYLQSVDMFPQTARCEVVVKMTR 457 >gi|239628824|ref|ZP_04671855.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239518970|gb|EEQ58836.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 475 Score = 271 bits (693), Expect = 1e-70, Method: Composition-based stats. Identities = 91/408 (22%), Positives = 150/408 (36%), Gaps = 55/408 (13%) Query: 2 SGTLLIDQYEQQLAEKVDR-LRQMML--AFQVPN----LQIFRSEPIHYRMRAEFHIWHD 54 L YE+QL K ++ L +M F+ + P YR +A+F + Sbjct: 79 GCQLQAMSYEEQLRFKENKVLNNLMRIGKFKRDEIKMLPIMGMENPWRYRNKAQFPFGRN 138 Query: 55 GDD-LYHIMFDQQTKERMRIDYFMPGSLLINAL-----------MIEMMATIRLEPLLRA 102 D + + +T + + D + G + +E + L+R Sbjct: 139 KDGEIIAGFYAGRTHDIIGNDDCLLGVEENQEILGIIKGFMKENGLEPYDENAHKGLVRH 198 Query: 103 KLFQIDYLTSQSDQAIVTLIYHR--LLDDAWRECAIR-------------LRDALHARK- 146 L + + T + +V L+D R+ L + L K Sbjct: 199 VLIRKGFKTGELMVCLVVNGRTLGGRLEDGLRDSRADSLADNSADRLAGCLVEKLCQVKG 258 Query: 147 -YQIQLIGRANKTKICLDRD----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEW 201 I KT + + ++ Y +T + Y+ SF Q N + Sbjct: 259 MTSISYSVNMEKTNVIMGKEVVNLYGPGYITDYIGDVQYQISPLSFYQVNPVQTEKLYGT 318 Query: 202 VLA-ATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK 260 L A + +LYCG G SL LA+ +V VEI ++E AR N A N ++NV+ Sbjct: 319 ALEYADLSGNETVWDLYCGIGTISLFLAQKAKKVYGVEIIPQAIEDARRNAALNGMDNVE 378 Query: 261 IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HI 318 ++E + + I VDPPR G D + + + Sbjct: 379 FFVGKAEEVLPEQYEKNQI-----------HADVIVVDPPRKGCDTVCLDTILKMRPEKV 427 Query: 319 LYISCNPDSLCRDLSILS-TTHTIERLALFDQFPYTRHMECGVLLVRK 365 +Y+SC+ +L RDL L+ + + ++ D FP T H EC V L RK Sbjct: 428 VYVSCDSATLARDLRYLADGGYVVGKVRGCDMFPGTVHTECIVELCRK 475 >gi|322387793|ref|ZP_08061401.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus infantis ATCC 700779] gi|321141295|gb|EFX36792.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus infantis ATCC 700779] Length = 452 Score = 271 bits (693), Expect = 1e-70, Method: Composition-based stats. Identities = 69/380 (18%), Positives = 154/380 (40%), Gaps = 40/380 (10%) Query: 10 YEQQLAEKVDRLRQMMLAF-QVPNLQI----FRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 Y +QL K +++ + + ++++ P YR +A+ + L F Sbjct: 88 YPEQLKFKTKQVKDSLYKIAGITDIEVADTLGMENPFKYRNKAQVPVRRVNGVLETGFFR 147 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIR-----------LEPLLRAKLFQIDYLTSQ 113 + + + M ++ F + +I+ +++ + +R L+R + + + + Q Sbjct: 148 KNSHDLMPLEDFYIQNPVIDQVILALRDLLRRYDLKPYDEKEQSGLIRNLVVRRGHHSGQ 207 Query: 114 SDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDE 169 +VT + L + + + + Q + ++ +DY+ + Sbjct: 208 IMVILVTTRPKIFRVEQLIEQVIKQFPEIVSVMQNINDQNTNAIFGKEWRVLYGQDYITD 267 Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLA 228 ++ ++ +F Q N + + + + + + D+ ++ Y G G L +A Sbjct: 268 QMLGND----FQISGPAFYQVNTEMAEKLYQTAIDFAELSEDDVVIDAYSGIGTIGLSVA 323 Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288 +H V VE+ +VE ++ N N + N V +++ + +E Sbjct: 324 KHVKEVYGVEVTPEAVENSQKNAELNGITNAHYVCDTAENAMKNWLKE------------ 371 Query: 289 SYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST-THTIERLA 345 + I VDPPR GL ++ + I YISCN ++ RD+ + + ++++ Sbjct: 372 GIQPTAILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMARDIKLYQKLGYELKKVQ 431 Query: 346 LFDQFPYTRHMECGVLLVRK 365 D FP T H+EC LLV++ Sbjct: 432 PVDLFPQTHHVECVSLLVKR 451 >gi|226323498|ref|ZP_03799016.1| hypothetical protein COPCOM_01273 [Coprococcus comes ATCC 27758] gi|225208182|gb|EEG90536.1| hypothetical protein COPCOM_01273 [Coprococcus comes ATCC 27758] Length = 471 Score = 271 bits (692), Expect = 1e-70, Method: Composition-based stats. Identities = 82/394 (20%), Positives = 156/394 (39%), Gaps = 39/394 (9%) Query: 2 SGTLLID-QYEQQLAEKVDRLRQMMLAFQVPNLQI---------FRSEPIHYRMRAEFHI 51 G + + Y +QL K ++R ++ ++ EP YR +A+F I Sbjct: 82 GGCQIQEMDYRKQLEFKNTKVRNNLIRLGSVEEELLDQIMEPIAGMEEPFRYRNKAQFPI 141 Query: 52 WHDG-DDLYHIMFDQQTKERMRI----------DYFMPGSLLINALMIEMMATIRLE--- 97 D +L + +T + + + + + +++ + E ++ E Sbjct: 142 GVDKEGNLIAGFYAGRTHQIIPVPNRDCVLGVPENKVILDQILDYMREEKISAYDEERHK 201 Query: 98 PLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRD---ALHARKYQIQLIGR 154 L+R L + + T + ++ + E ++ + + + Sbjct: 202 GLVRHVLVRYGFTTKEIMVCLIINGDKLPCSEKLLEKLTKIPGMTSITYNINKEKTNVIM 261 Query: 155 ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDL 213 +K + Y+ + + + Y+ SF Q N + L A + + Sbjct: 262 GSKVCPLWGQTYITDYIG----NVKYQISPLSFYQVNPVQTEVLYGTALEYAGLTGKETV 317 Query: 214 LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273 ++YCG G SL LA+ +V VEI ++E A++N N + N + ++E Sbjct: 318 WDVYCGIGTISLFLAQKAQKVYGVEIVPQAIEDAKHNAEINEITNAEFFVGKAEEVLP-- 375 Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCRD 331 E + K+ R I VDPPR G + + + MVQ P I+Y+SC+ +L RD Sbjct: 376 --EYYADYAKEHPGEHARADVIVVDPPRKGCERSVLDTMVQMEPERIVYVSCDSATLARD 433 Query: 332 LSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364 + L + I ++ D FP + H+E VLL R Sbjct: 434 VKYLRENGYEIRKVKATDMFPMSVHVETVVLLSR 467 >gi|319646952|ref|ZP_08001180.1| YfjO protein [Bacillus sp. BT1B_CT2] gi|317391011|gb|EFV71810.1| YfjO protein [Bacillus sp. BT1B_CT2] Length = 463 Score = 271 bits (692), Expect = 1e-70, Method: Composition-based stats. Identities = 73/387 (18%), Positives = 146/387 (37%), Gaps = 36/387 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN-------LQIFRSEPIHYRMRAEFHIW-H 53 L YE+QL K D + Q + + I P HYR +++F + Sbjct: 90 GCQLQHLAYEEQLKGKRDIVIQSLERHTRFDIGKMDIRPTIGMENPWHYRNKSQFQLGLS 149 Query: 54 DGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLL----RAKLFQIDY 109 + ++ + + I + N + + + R + + Sbjct: 150 KNGKMVAGLYGLDSHRLVPITECIVQHPATNKTTQTVKQVLEDFGISVYNERKRTGDVRT 209 Query: 110 LTS----QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD 165 + + ++ + V L+ + A ++ L IQ + +A KT + D Sbjct: 210 IVTRVGFETGEVQVVLVTSKEDLPRKELIAEEIKKRLPEVTSVIQNVNKA-KTSVVFGDD 268 Query: 166 ----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELYCGN 220 + + + + +F Q N V + + V AA + +++ YCG Sbjct: 269 TRLLAGNMVIQEFLGEVSFELSARAFFQLNPIQTVKLYDEVKKAAKLTGREKVVDAYCGV 328 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G + +A + +++ K S++ A N + + N + V +++ + +E Sbjct: 329 GTIGMWIADGAKEIRGMDVIKESIDDANQNAKKHGIENARYVTGTAEHWLPKWTKE---- 384 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTT 338 +R + VDPPR+G D + ++ +Y+SCNP +L +DL L+ Sbjct: 385 --------GFRPDVVIVDPPRTGCDRTFLDTIRQVKPKRFVYVSCNPSTLAKDLQYLAKD 436 Query: 339 HTIERLALFDQFPYTRHMECGVLLVRK 365 + +E + D FP T H+E V L K Sbjct: 437 YHVEYIQPVDMFPQTAHVESVVSLKLK 463 >gi|52079266|ref|YP_078057.1| tRNA (uracil-5-)-methyltransferase [Bacillus licheniformis ATCC 14580] gi|52002477|gb|AAU22419.1| tRNA (uracil-5-)-methyltransferase [Bacillus licheniformis ATCC 14580] Length = 463 Score = 271 bits (692), Expect = 1e-70, Method: Composition-based stats. Identities = 73/387 (18%), Positives = 146/387 (37%), Gaps = 36/387 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN-------LQIFRSEPIHYRMRAEFHIW-H 53 L YE+QL K D + Q + + I P HYR +++F + Sbjct: 90 GCQLQHLAYEEQLKGKRDIVIQSLERHTRFDIGKMDIRPTIGMENPWHYRNKSQFQLGLS 149 Query: 54 DGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLL----RAKLFQIDY 109 + ++ + + I + N + + + R + + Sbjct: 150 KNGKMVAGLYGLDSHRLVPITECIVQHPATNKTTQTVKQVLEDFGISVYNERKRTGDVRT 209 Query: 110 LTS----QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD 165 + + ++ + V L+ + A ++ L IQ + +A KT + D Sbjct: 210 IVTRVGFETGEVQVVLVTSKEDLPRKELIAEEIKKRLPEVTSVIQNVNKA-KTSVVFGDD 268 Query: 166 ----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELYCGN 220 + + + + +F Q N V + + V AA + +++ YCG Sbjct: 269 TRLLAGNMVIQEFLGEVSFELSARAFFQLNPIQTVKLYDEVKKAAKLTGREKVVDAYCGV 328 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G + +A + +++ K S++ A N + + N + V +++ + +E Sbjct: 329 GTIGMWIADGAKEIRGMDVIKESIDDANQNAKKHGIENARYVTGTAEHWLPKWTKE---- 384 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTT 338 +R + VDPPR+G D + ++ +Y+SCNP +L +DL L+ Sbjct: 385 --------GFRPDVVIVDPPRTGCDRTFLDTIRQVKPKRFVYVSCNPSTLAKDLQYLAKD 436 Query: 339 HTIERLALFDQFPYTRHMECGVLLVRK 365 + +E + D FP T H+E V L K Sbjct: 437 YHVEYIQPVDMFPQTAHVESVVSLKLK 463 >gi|257885254|ref|ZP_05664907.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium 1,231,501] gi|257821106|gb|EEV48240.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium 1,231,501] Length = 460 Score = 271 bits (692), Expect = 1e-70, Method: Composition-based stats. Identities = 81/390 (20%), Positives = 148/390 (37%), Gaps = 43/390 (11%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN-------LQIFRSEPIHYRMRAEFHIWHD 54 L Y+ QL K D L Q + F+ I EP HYR +A+F + + Sbjct: 84 GCQLQHLAYQAQLDFKKDLLLQALEKFKPAGFRSYQLLPTIGMDEPWHYRNKAQFQLRKN 143 Query: 55 GD--DLYHIMFDQQTKERMRIDYFMPG-----------SLLINALMIEMMATIRLEPLLR 101 + +++ + + + I + L+N + + R Sbjct: 144 KQTQKIEAGLYEANSHQLVPITDCLVQEPRTQKVMNTVVQLLNKFDAPIYDERTNSGIFR 203 Query: 102 AKLFQIDYLTSQSDQAIVTLIYHRLLDDAW-RECAIRLRD---ALHARKYQIQLIGRANK 157 + +I T + +T +A RE RL + + + Q + ++ Sbjct: 204 TIMVRIGVKTGELQVVFITRSKKFPQKNAMIREINERLPEVVSIMQNVQAQKTSLVMGDE 263 Query: 158 TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLEL 216 T ++ ++E++ + + +F Q N + E + A +++ Sbjct: 264 TIHLWGKEAIEEQI----NEVTFDLSPRAFFQLNPQQTELLYGEGIKALDVQPNETIVDA 319 Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276 YCG G L +A+ V ++ ++ A+ N+ +N + ++++ E Sbjct: 320 YCGVGTIGLSVAKQAKEVRGMDTVPQAIADAKKNVERLGYHNTRYEVGTAEQVLPKWLNE 379 Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSI 334 ++ I VDPPR+GLD+A + + YP ++YISCN +L RDL Sbjct: 380 ------------GFQPDGIIVDPPRTGLDNALIQSLLKYPPKKLVYISCNVSTLARDLVN 427 Query: 335 LSTTHTIERLALFDQFPYTRHMECGVLLVR 364 LS IE L D FP T E V + R Sbjct: 428 LSKKFKIEYLQSVDMFPQTARCEVVVKMTR 457 >gi|253575073|ref|ZP_04852412.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Paenibacillus sp. oral taxon 786 str. D14] gi|251845529|gb|EES73538.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Paenibacillus sp. oral taxon 786 str. D14] Length = 333 Score = 271 bits (692), Expect = 2e-70, Method: Composition-based stats. Identities = 79/349 (22%), Positives = 132/349 (37%), Gaps = 41/349 (11%) Query: 37 RSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSL-----------LINA 85 + P YR +A+ + L + + + + ++ + + Sbjct: 1 MAAPWRYRNKAQVPVGVIDGALVGGFYARGSHRIIDMETCLIQHESNDDVISRVKAIGRR 60 Query: 86 LMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHAR 145 L I + LLR + ++ + T + +VT +D W +R+ L A Sbjct: 61 LGITAYDEETGQGLLRHVVVKVGFRTGEMMLVLVTNGDRIPREDEW---IAAIREELPAV 117 Query: 146 KYQIQLIG-------RANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHM 198 Q + + T++ R E + + + SF Q N + Sbjct: 118 VSICQNVNTRQTNVIFGDVTRVLWGR----EVIYDYIGDVKFAISARSFYQVNPIQTEVL 173 Query: 199 L-EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVN 257 + V A Q +++ YCG G SL LA+H RV VEI K ++E AR N N +N Sbjct: 174 YGKTVEYAGLTGQETVIDAYCGIGTISLFLAQHAKRVYGVEIVKEAIEDARVNAKLNGMN 233 Query: 258 NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP- 316 +V +S++ A + I VDPPR G D + + Sbjct: 234 HVTFEVGASEDVIPAWKE------------QGIEADVIVVDPPRKGCDPHLLDTIIKMKP 281 Query: 317 -HILYISCNPDSLCRDLSILS-TTHTIERLALFDQFPYTRHMECGVLLV 363 ++Y+SCNP +L RDL IL + + D FP+T H+E L Sbjct: 282 ERVVYVSCNPATLARDLRILEDGGYRTVEVTPVDMFPHTVHVEAVCFLK 330 >gi|52784631|ref|YP_090460.1| YfjO [Bacillus licheniformis ATCC 14580] gi|52347133|gb|AAU39767.1| YfjO [Bacillus licheniformis ATCC 14580] Length = 468 Score = 271 bits (692), Expect = 2e-70, Method: Composition-based stats. Identities = 73/387 (18%), Positives = 146/387 (37%), Gaps = 36/387 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN-------LQIFRSEPIHYRMRAEFHIW-H 53 L YE+QL K D + Q + + I P HYR +++F + Sbjct: 95 GCQLQHLAYEEQLKGKRDIVIQSLERHTRFDIGKMDIRPTIGMENPWHYRNKSQFQLGLS 154 Query: 54 DGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLL----RAKLFQIDY 109 + ++ + + I + N + + + R + + Sbjct: 155 KNGKMVAGLYGLDSHRLVPITECIVQHPATNKTTQTVKQVLEDFGISVYNERKRTGDVRT 214 Query: 110 LTS----QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD 165 + + ++ + V L+ + A ++ L IQ + +A KT + D Sbjct: 215 IVTRVGFETGEVQVVLVTSKEDLPRKELIAEEIKKRLPEVTSVIQNVNKA-KTSVVFGDD 273 Query: 166 ----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELYCGN 220 + + + + +F Q N V + + V AA + +++ YCG Sbjct: 274 TRLLAGNMVIQEFLGEVSFELSARAFFQLNPIQTVKLYDEVKKAAKLTGREKVVDAYCGV 333 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G + +A + +++ K S++ A N + + N + V +++ + +E Sbjct: 334 GTIGMWIADGAKEIRGMDVIKESIDDANQNAKKHGIENARYVTGTAEHWLPKWTKE---- 389 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTT 338 +R + VDPPR+G D + ++ +Y+SCNP +L +DL L+ Sbjct: 390 --------GFRPDVVIVDPPRTGCDRTFLDTIRQVKPKRFVYVSCNPSTLAKDLQYLAKD 441 Query: 339 HTIERLALFDQFPYTRHMECGVLLVRK 365 + +E + D FP T H+E V L K Sbjct: 442 YHVEYIQPVDMFPQTAHVESVVSLKLK 468 >gi|167750213|ref|ZP_02422340.1| hypothetical protein EUBSIR_01187 [Eubacterium siraeum DSM 15702] gi|167656775|gb|EDS00905.1| hypothetical protein EUBSIR_01187 [Eubacterium siraeum DSM 15702] Length = 383 Score = 271 bits (692), Expect = 2e-70, Method: Composition-based stats. Identities = 81/387 (20%), Positives = 153/387 (39%), Gaps = 42/387 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHD-GDDLYH 60 L YEQQL K +++ +F + I +P +YR + + D + Sbjct: 14 GCQLSNMTYEQQLEWKQKDTEKLLGSFGKVSEIIGADDPYNYRNKVQAVFRSDRNGRIIS 73 Query: 61 IMFDQQTKERMRIDYFMPGSLLINALMI---EMMATIRLEPL--------LRAKLFQIDY 109 ++ + ID M + +++ +++ + +L P LR L ++ Sbjct: 74 GVYQSSRNGIVGIDSCMLDDKRADEIIVGIRDLLRSFKLHPYDEGTERGFLRHVLVRVGK 133 Query: 110 LTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALH-------ARKYQIQLIGRANKTKICL 162 T + +VTL+ + + L + +++ ++ Sbjct: 134 NTG---EILVTLVGGNSMFPKKHDFVKALVKRFPDITTVTFSVNRTPEMLLLGENNEVLY 190 Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNG 221 Y+ + L +R +SF Q N + ++ + A K + D+L + Y G G Sbjct: 191 GEGYITDILCGK----RFRISPHSFYQINHAQTEKLYDYAIKAAKLTKKDVLLDAYSGIG 246 Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVN-NVKIVRMSSKEFTQAMRREREFN 280 ++ + + +V +E +V A N N + N+ R + EF Sbjct: 247 TIGIIASDYVKQVQGIEYNASAVRDAVKNCHENGLTRNIAFNRGDAGEF----------- 295 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILSTT 338 L+ + + +DP R+G D + + A I+YISCNP + RDL L+ Sbjct: 296 -LEKKAKLGTHYDAVILDPARTGADRKFLNSLVKIAPERIVYISCNPATQARDLKTLTKK 354 Query: 339 HTIERLALFDQFPYTRHMECGVLLVRK 365 +T+ + FD FP+TRH+EC V + RK Sbjct: 355 YTVTDIQPFDMFPHTRHVECVVSMSRK 381 >gi|322391885|ref|ZP_08065350.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus peroris ATCC 700780] gi|321145365|gb|EFX40761.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus peroris ATCC 700780] Length = 451 Score = 271 bits (692), Expect = 2e-70, Method: Composition-based stats. Identities = 69/380 (18%), Positives = 157/380 (41%), Gaps = 40/380 (10%) Query: 10 YEQQLAEKVDRLRQMMLAF-QVPNLQI----FRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 Y +QL K +++ + + ++++ P+ YR +A+ + + F Sbjct: 88 YPEQLKFKTKQVKDSLYKIAGIMDIEVADTLGMENPVQYRNKAQVPVRRVNGQVETGFFR 147 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIR-----------LEPLLRAKLFQIDYLTSQ 113 + + + M ++ F +I+ +++ + +R L+R + + + + + Sbjct: 148 KNSHDLMPLEDFYIQDPVIDQVIVALRDLLRRYDLKPYDEKEQSGLIRNLVVRRGHHSGE 207 Query: 114 SDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDE 169 +VT + L + + + + Q + ++ +DY+ + Sbjct: 208 IMVILVTTRPKIFRVEQLIEQVIKQFPEIVSVMQNINDQNTNAIFGKEWRVLYGQDYITD 267 Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLA 228 ++ ++ +F Q N + + + + + + D+ ++ Y G G L +A Sbjct: 268 QMLGN----SFQISGPAFYQVNTEMAEKLYQTAIDFAELSEEDVVIDAYSGIGTIGLSVA 323 Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288 +H V VE+ +VE ++ N + N + N V S++ N + + Sbjct: 324 KHVKDVYGVEVIPEAVENSQKNASINGITNAHYVADSAE------------NAMTKWSKN 371 Query: 289 SYRFKTIFVDPPRSGLDDATVGM-VQAYP-HILYISCNPDSLCRDLSILST-THTIERLA 345 + I VDPPR GL ++ + V P I Y+SCNP ++ RD+ + + ++++ Sbjct: 372 GIKPDVIIVDPPRKGLTESFIKASVAMQPEKITYVSCNPATMARDIKLYQELGYELKKVQ 431 Query: 346 LFDQFPYTRHMECGVLLVRK 365 D FP T H+E LLV++ Sbjct: 432 PVDLFPQTHHVEAVSLLVKE 451 >gi|257467028|ref|ZP_05631339.1| tRNA (Uracil-5-) -methyltransferase [Fusobacterium gonidiaformans ATCC 25563] gi|315918165|ref|ZP_07914405.1| tRNA (Uracil-5-)-methyltransferase [Fusobacterium gonidiaformans ATCC 25563] gi|313692040|gb|EFS28875.1| tRNA (Uracil-5-)-methyltransferase [Fusobacterium gonidiaformans ATCC 25563] Length = 456 Score = 271 bits (692), Expect = 2e-70, Method: Composition-based stats. Identities = 87/390 (22%), Positives = 162/390 (41%), Gaps = 34/390 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-----IFRSEPIHYRMRAEFHIWHDGD 56 + +YE QL K ++++M N I E HYR + Sbjct: 80 GCDFAMAKYEAQLQYKTAMVKEVMERIGKLNSNLVLDCIASPEEKHYRNKVIEPFSKHKG 139 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMA-------TIRLEPLLRAKLFQIDY 109 + F +++ E ++ M S L N ++ ++ E + L I Sbjct: 140 KIITGFFQRRSHEVFEVEENMLNSKLGNKIIETFKQYANQEKLSVYDEKKHQGLLRNIMI 199 Query: 110 LTSQSDQAIVTLI-YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR---- 164 T+ S +A++ LI + ++++ ++ +++ + K I L KT + L Sbjct: 200 RTNSSQEAMLVLIVNAKKIEESLKKILLQMPKNIPELK-SIYLSLNTRKTNVVLGDKNIC 258 Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNF 223 + ++ L + + SF Q N H+ E L+ I+ ++++ Y G G Sbjct: 259 IWGEKTLKEELFGIHFHISPTSFFQINVPQTKHLYEKALSLIPKIENKNVVDAYSGTGTI 318 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 ++L+R +V A+EI + + NH++N++ + + E +RL Sbjct: 319 GMLLSRKAKKVYAIEIVESASRDGAKTAKENHIDNIEFICGPVE---------VELDRLL 369 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST-THT 340 + I DPPR G++ + + V P ++YISCNP +L RDL I++ + Sbjct: 370 E---EGKNLDAIVFDPPRKGIEKSILRKVAEVGIPEMVYISCNPSTLARDLKIMAECGYQ 426 Query: 341 IERLALFDQFPYTRHMECGVLLVRKPSGWH 370 + + FD FP T H+E VL+ R P H Sbjct: 427 VGEIQPFDMFPQTSHVESVVLMSRNPEEKH 456 >gi|254826049|ref|ZP_05231050.1| RNA methyltransferase [Listeria monocytogenes FSL J1-194] gi|293595289|gb|EFG03050.1| RNA methyltransferase [Listeria monocytogenes FSL J1-194] Length = 459 Score = 271 bits (692), Expect = 2e-70, Method: Composition-based stats. Identities = 80/390 (20%), Positives = 141/390 (36%), Gaps = 40/390 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54 L Y QL K D + Q + + I +P YR +++F Sbjct: 84 GCQLQHVAYSAQLELKRDIVIQSIEKHTKIDPTKLKIRPTIGMEDPWRYRNKSQFQTRMV 143 Query: 55 GDDLYH-IMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRA 102 G +F + + + + + L+ + + ++R Sbjct: 144 GSGQVETGLFGANSHQLVPFEDCIVQQPVTIKVTNFVRDLLEKYGVPIYDEKAGSGIVRT 203 Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162 + + T ++ +T + L RE + AL +Q + +A + I Sbjct: 204 IVVRTGVKTGETQLVFITN--SKKL-PKKREMLAEIEAALPEVTSIMQNVNQAKSSLIFG 260 Query: 163 DRDYV---DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYC 218 D ++ E + L + +F Q N + + V A + L++ YC Sbjct: 261 DETFLLAGKESIEEKLMELEFDLSARAFFQLNPFQTERLYQEVEKALVLTGSETLVDAYC 320 Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278 G G A V ++I S+E A+ N N + NV +++ E Sbjct: 321 GVGTIGQAFAGKVKEVRGMDIIPESIEDAKRNAEKNGIENVYYEVGKAEDVLPKWVNE-- 378 Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILS 336 +R + VDPPRSG D + + ++Y+SCNP +L RDL++L+ Sbjct: 379 ----------GFRPDAVIVDPPRSGCDQGLIKSLLDVEAKQLVYVSCNPSTLARDLALLA 428 Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVRKP 366 + I + D FP T H+E VLL K Sbjct: 429 KKYRIRYMHPVDMFPQTAHVETVVLLQLKD 458 >gi|217967096|ref|YP_002352602.1| RNA methyltransferase, TrmA family [Dictyoglomus turgidum DSM 6724] gi|217336195|gb|ACK41988.1| RNA methyltransferase, TrmA family [Dictyoglomus turgidum DSM 6724] Length = 448 Score = 270 bits (691), Expect = 2e-70, Method: Composition-based stats. Identities = 72/384 (18%), Positives = 132/384 (34%), Gaps = 37/384 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWHDGDD 57 L+ Y QL K + +I P YR +A+ + Sbjct: 80 GCHLMHVNYGYQLELKRMIVEDAFKRIGKIEKEISPVIGMENPYRYRNKAKIPVGKRRGK 139 Query: 58 LYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLFQ 106 + + T + I + I IE+ ++ LLR + + Sbjct: 140 VVLGFYKPNTHHIVDISGCIVQHEDADKVIETTKEAIKKFHIEVYNELQHTGLLRFVVVR 199 Query: 107 IDYLTSQSDQAIV---TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD 163 + +V + + + +R L+ + ++++ Sbjct: 200 RSFAFDDLMVVLVSKGMIDNAKKIARFYRYRLKNLKSFYININPKRTNEIFGEESRLIWG 259 Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNF 223 +E + I+ SF Q N+ + L + + YCG G Sbjct: 260 ----EEVIRDKIGEFIFEISPVSFFQINSIQTEKLYNKALEYLSPNSKLVFDAYCGIGTI 315 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 SL L++ ++V +E+ + ++E A N N V NV+ + S+E + + Sbjct: 316 SLFLSKKAEKVYGIEVERSAIEDAWKNARINKVKNVEFIWGRSEEVIPRLIED------- 368 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STTHT 340 I +DPPR G D + + I+YISC P +L RD++IL + Sbjct: 369 -----GKIPDAIVLDPPRKGCDQNLLEAIIRAKVKQIIYISCYPSTLARDVNILVDAGYN 423 Query: 341 IERLALFDQFPYTRHMECGVLLVR 364 + + D FP T H+E LL + Sbjct: 424 LVNIQPVDMFPQTFHVENIALLEK 447 >gi|332359419|gb|EGJ37239.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis SK355] Length = 469 Score = 270 bits (691), Expect = 2e-70, Method: Composition-based stats. Identities = 73/384 (19%), Positives = 153/384 (39%), Gaps = 40/384 (10%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFHIWHDGDDLY 59 L Y QL K +++ + + + +P+ YR +A+ + L Sbjct: 96 LGHLNYPAQLDFKRKQVKDSLYKIAGVSDVEVPPTLGMEQPLGYRNKAQVPVRRVNGQLE 155 Query: 60 HIMFDQQTKERMRIDYFMPGSLLINALMI---EMMATIRLEP--------LLRAKLFQID 108 F + + + + I+ F +I+ +++ +++ L+P L+R + + Sbjct: 156 TGFFRKNSHDLLPIEDFYIQDPVIDQVILFTRDLLRRFDLKPYDEQEKTGLIRNLVVRRG 215 Query: 109 YLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR 164 + + + +VT + L + E ++ + Q + + Sbjct: 216 HYSGEIMVIMVTTRPKIFRVEQLMERLTETFPAIKSIMQNINDQPGNAIFGKDWRTLYGQ 275 Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNF 223 DY+ +++ ++ +F Q N + + + + ++ D +++ Y G G Sbjct: 276 DYITDQMLGND----FQIAAPAFYQVNTEMAEKLYQTAIDFSELTADDMVIDAYSGIGTI 331 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 L +A+H +V +E+ +VE +R N N + N V ++E Q +E Sbjct: 332 GLSVAKHVKQVYGMEVIPEAVENSRKNAEINGIANASYVCAPAEEAIQNWLKE------- 384 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGM--VQAYPHILYISCNPDSLCRDLSILST-THT 340 + I VDPPR GL ++ + P I YISCN ++ RD+ + + Sbjct: 385 -----GIQADVILVDPPRKGLTESFIKASVSMEPPKITYISCNVATMARDIKLYQELGYE 439 Query: 341 IERLALFDQFPYTRHMECGVLLVR 364 ++++ D FP T H+E LVR Sbjct: 440 LKKVQPVDLFPQTHHVEAVSQLVR 463 >gi|160933694|ref|ZP_02081082.1| hypothetical protein CLOLEP_02555 [Clostridium leptum DSM 753] gi|156867571|gb|EDO60943.1| hypothetical protein CLOLEP_02555 [Clostridium leptum DSM 753] Length = 371 Score = 270 bits (691), Expect = 2e-70, Method: Composition-based stats. Identities = 78/379 (20%), Positives = 146/379 (38%), Gaps = 40/379 (10%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMR--AEFHIWHDGDDLYHIMFDQQ 66 Y +QL K R+ ++ F I P HYR + A F + + ++ Sbjct: 2 DYARQLQFKQRRVEGLLKQFHSVEPIIGMETPYHYRNKVSAAFALAR-NQQIISGVYQDS 60 Query: 67 TKERMRIDYFMPGSLLINALMIEMM-----------ATIRLEPLLRAKLFQIDYLTSQSD 115 T + +D+ + + ++ + + + LR L + + T+Q Sbjct: 61 THRIVPVDHCLIEDPKADEIICSIRRLMKSFKLLPYDEVTQKGFLRHVLIKRGFATNQIM 120 Query: 116 QAIVTLIY----HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERL 171 +VT + +A + + L + + + K+ + + L Sbjct: 121 VVLVTATPVFPAKKRFTEALLKLHPEITTILMNLNDRYTSMVLGEQEKVLYGPGKIQDIL 180 Query: 172 TVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNFSLVLARH 230 ++ SF Q N + + A +++ YCG G LV A+ Sbjct: 181 C----GCRFQISAKSFYQINPAQTEALYLKAMEYAGLTGSETVIDAYCGIGTIGLVAAKR 236 Query: 231 -FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHS 289 +V+ VE+ + +V+ A N N ++N + EF M E+E Sbjct: 237 GAKKVVGVELNRDAVKDAIENAKLNKLSNAWFCAGDAGEFMLEMSLEKEP---------- 286 Query: 290 YRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCRDLSILS--TTHTIERLA 345 +F+DPPR+G D + ++ P ++YISCNP++ RDL L+ + + R+ Sbjct: 287 --ADVVFMDPPRAGSDRTFLSSLIALSPQKVVYISCNPETQQRDLRYLTSKGPYRVTRIQ 344 Query: 346 LFDQFPYTRHMECGVLLVR 364 D FP+T H+E LL + Sbjct: 345 PVDMFPHTNHVETVALLEK 363 >gi|313884344|ref|ZP_07818106.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Eremococcus coleocola ACS-139-V-Col8] gi|312620422|gb|EFR31849.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Eremococcus coleocola ACS-139-V-Col8] Length = 456 Score = 270 bits (691), Expect = 2e-70, Method: Composition-based stats. Identities = 81/385 (21%), Positives = 142/385 (36%), Gaps = 40/385 (10%) Query: 4 TLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGDDL 58 TL Y QLA K +++ + P YR +A+ + L Sbjct: 86 TLQHLSYPGQLAFKQKLVQEDFARIGHFTDITVQETLAAPNPWGYRNKAQVPLRQVKGQL 145 Query: 59 YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKLFQI 107 F + + + + I+ F +I+ +++ + +R + LLR + + Sbjct: 146 ETGFFRRLSHDLVPIENFHIQDPVIDQIILMVRDILRDFNLSAYDEKSGKGLLRHLVVKR 205 Query: 108 DYLTSQSDQAIVTLIYHRLLDDAWRECAIR----LRDALHARKYQIQLIGRANKTKICLD 163 + + Q +V + E + L + + K+ Sbjct: 206 GHYSGQVMIILVVNGDKLPKQEQVVEKIVAQVPGLVSLILNINRSKGNAILGRQEKVLWG 265 Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGN 222 + +++ L + SF Q N + LAA + +L+ YCG G Sbjct: 266 QATYHDQML----GLDFEISGQSFYQVNTPQAEELYRLALAAADLHGHERVLDAYCGIGT 321 Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282 SL LA+ V A+EI ++E A++N AN + NV ++ + Sbjct: 322 ISLALAQQAKEVYAMEIVPQAIEMAKFNAQANALTNVHFEAGKAEVILPKWQE------- 374 Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST-TH 339 F VDPPR GLD V + I+Y+SCNP + RD +I + + Sbjct: 375 -----QGLDFDVAVVDPPRKGLDRTFVDTLIDLNPGKIVYVSCNPATCARDCAIFAEAGY 429 Query: 340 TIERLALFDQFPYTRHMECGVLLVR 364 ++ + D FP T H+E VL+ R Sbjct: 430 EVKTIKPVDMFPQTVHVEALVLMTR 454 >gi|312867756|ref|ZP_07727962.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus parasanguinis F0405] gi|311096819|gb|EFQ55057.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus parasanguinis F0405] Length = 452 Score = 270 bits (691), Expect = 2e-70, Method: Composition-based stats. Identities = 69/380 (18%), Positives = 156/380 (41%), Gaps = 40/380 (10%) Query: 10 YEQQLAEKVDRLRQMMLAF-QVPNLQI----FRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 Y +QL K +++ + + ++++ P+ YR +A+ + + F Sbjct: 88 YPEQLKFKAKQVKDSLYKMAGISDIEVPLTLGMDHPVQYRNKAQVPVRRVNGQVETGFFR 147 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIR-----------LEPLLRAKLFQIDYLTSQ 113 + + + M I+ F +I+ +++ + IR L+R + + + + + Sbjct: 148 KNSHDLMPIEDFYIQDPVIDQVILALRDLIRRFDLKPYDEKEQSGLIRNLVVRRGHHSGE 207 Query: 114 SDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDE 169 +VT + L + + ++ + Q + ++ +DY+ + Sbjct: 208 IMVILVTTRPKVFRVDQLIEQLIKQFPAIKSVMQNINDQNTNAIFGKEWRVLYGQDYITD 267 Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLA 228 ++ ++ +F Q N + + + + + + D+ ++ Y G G L +A Sbjct: 268 QMLGN----SFQISGPAFYQVNTEMAEKLYQTAIDFAELKEDDVVIDAYSGIGTIGLSVA 323 Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288 +H V VE+ +VE ++ N + N + N V +++ + +E Sbjct: 324 KHVKEVYGVEVIPEAVENSQKNASINGITNAHYVCDTAENAMKNWLKE------------ 371 Query: 289 SYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST-THTIERLA 345 + I VDPPR GL ++ + I YISCN ++ RD+ + + ++++ Sbjct: 372 GIQPTAILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMARDIKLYQELGYELKKVQ 431 Query: 346 LFDQFPYTRHMECGVLLVRK 365 D FP T H+EC LLV++ Sbjct: 432 PVDLFPQTHHVECVSLLVKR 451 >gi|328473948|gb|EGF44764.1| RNA methyltransferase [Listeria monocytogenes 220] Length = 458 Score = 270 bits (691), Expect = 2e-70, Method: Composition-based stats. Identities = 80/389 (20%), Positives = 140/389 (35%), Gaps = 39/389 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ------VPNLQIFRSEPIHYRMRAEFHIWHDG 55 L Y QL K L ++ I +P YR +++F G Sbjct: 84 GCQLQHVAYSAQLELKEILLFNQSKTYKNRSNQIKIRPTIGMEDPWRYRNKSQFQTRMVG 143 Query: 56 DDLYH-IMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAK 103 +F + + + I+ + L+ + + ++R Sbjct: 144 SGQVETGLFGANSHQLVPIEDCIVQQPVTIKVTNFVRDLLEKYGVPIYDEKAGSGIVRTI 203 Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD 163 + + T ++ +T + L RE + AL +Q + +A + I D Sbjct: 204 VVRTGVKTGETQLVFITN--SKKL-PKKREMLAEIEAALPEVTSIMQNVNQAKSSLIFGD 260 Query: 164 RDYV---DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCG 219 ++ E + L + +F Q N + + V A + L++ YCG Sbjct: 261 ETFLLAGKESIEEKLMELEFDLSARAFFQLNPFQTERLYQEVEKALVLTGSETLVDAYCG 320 Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279 G A V ++I S+E A+ N N + NV +++ E Sbjct: 321 VGTIGQAFAGKVKEVRGMDIIPESIEDAKRNAEKNGIENVYYEVGKAEDVLPKWVNE--- 377 Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILST 337 +R + VDPPRSG D + + ++Y+SCNP +L RDL++L+ Sbjct: 378 ---------GFRPDAVIVDPPRSGCDQGLIKSLLDVEAKQLVYVSCNPSTLARDLALLAK 428 Query: 338 THTIERLALFDQFPYTRHMECGVLLVRKP 366 + I + D FP T H+E VLL K Sbjct: 429 KYRIRYMQPVDMFPQTAHVETVVLLQLKD 457 >gi|56808950|ref|ZP_00366657.1| COG2265: SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Streptococcus pyogenes M49 591] Length = 436 Score = 270 bits (690), Expect = 2e-70, Method: Composition-based stats. Identities = 82/386 (21%), Positives = 145/386 (37%), Gaps = 38/386 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIF-------RSEPIHYRMRAEFHIWHD 54 ++ Y +QL K D +RQ + F+ + F +P HYR + +F + Sbjct: 66 GCQIMHLAYPKQLDFKDDVIRQALKKFKPTGYEQFEIRPTLGMKKPDHYRAKLQFQLRSF 125 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGSLL---INALMIEMMATIRLEPLLRAKLFQIDYL- 110 G + +F Q + + ID + L I + +++ +L K+ I + Sbjct: 126 GGTVKAGLFSQGSHRLVPIDNCLVQDQLTQDIINKITQLVDKYKLPIYNERKIAGIRTIM 185 Query: 111 -----TSQSDQAIVTLIYHRLLDDAWRECAIRL---RDALHARKYQIQLIGRANKTKICL 162 S Q IV L + E + ++T+I Sbjct: 186 VRKAQASDQVQIIVVSSKEVRLANFIGELTKAFPQVKTVALNSNRSKSSEIYGDETEILW 245 Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGNG 221 ++ + E + G L +F Q N + E V A G + +++ YCG G Sbjct: 246 GQEAIHEEVLDYGFAL----SPRAFYQLNPQQTEVLYGEVVKALDVGSKDHIIDAYCGVG 301 Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281 + A V ++I ++E A+ N A +N +++ + Sbjct: 302 SIGFAFAGKVKSVRGMDIIPEAIEDAQKNAKAMGFDNAYYEAGKAEDIIPKWYK------ 355 Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTH 339 YR I VDPPR+GLDD + + ++Y+SCN +L RDL L+ + Sbjct: 356 ------QGYRADAIIVDPPRTGLDDKLLKTILHYQPKQMVYVSCNTSTLARDLVQLTKVY 409 Query: 340 TIERLALFDQFPYTRHMECGVLLVRK 365 + + D FP+T E V L ++ Sbjct: 410 DVHYIQSVDMFPHTARTEAVVKLQKR 435 >gi|291556144|emb|CBL33261.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Eubacterium siraeum V10Sc8a] Length = 474 Score = 270 bits (690), Expect = 3e-70, Method: Composition-based stats. Identities = 80/386 (20%), Positives = 152/386 (39%), Gaps = 42/386 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHD-GDDLYH 60 L YEQQL K +++ +F + I +P +YR + + D + Sbjct: 14 GCQLSNMTYEQQLEWKQKDTEKLLGSFGKVSEIIGADDPYNYRNKVQAVFRSDRNGRIIS 73 Query: 61 IMFDQQTKERMRIDYFMPGSLLINALMI---EMMATIRLEPL--------LRAKLFQIDY 109 ++ + ID M + +++ +++ + +L P LR L ++ Sbjct: 74 GVYQSSRNGIVGIDSCMLDDKRADEIIVGIRDLLRSFKLHPYDEGTERGFLRHVLVRVGK 133 Query: 110 LTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALH-------ARKYQIQLIGRANKTKICL 162 T + +VTL+ + + L + +++ ++ Sbjct: 134 NTG---EILVTLVGGNSMFPKKHDFVKALVKQFPDITTVTFSVNRTPEMLLLGENNEVLY 190 Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNG 221 Y+ + L +R +SF Q N + ++ + A K + D+L + Y G G Sbjct: 191 GEGYITDILCGK----RFRISPHSFYQINHAQTEKLYDYAIKAAKLTKKDVLLDAYSGIG 246 Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVN-NVKIVRMSSKEFTQAMRREREFN 280 ++ + + +V +E +V A N N + N+ R + EF Sbjct: 247 TIGIIASDYVKQVQGIEYNASAVRDAVKNCHENGLTRNIAFNRGDAGEF----------- 295 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILSTT 338 L+ + + +DP R+G D + + A I+YISCNP + RDL L+ Sbjct: 296 -LEKKAKLGTHYDAVILDPARTGADRKFLNSLVKIAPERIVYISCNPATQARDLKTLTKK 354 Query: 339 HTIERLALFDQFPYTRHMECGVLLVR 364 +T+ + FD FP+TRH+E VLL + Sbjct: 355 YTVTDIQPFDMFPHTRHVETVVLLSK 380 >gi|313892229|ref|ZP_07825822.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Dialister microaerophilus UPII 345-E] gi|313119367|gb|EFR42566.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Dialister microaerophilus UPII 345-E] Length = 545 Score = 270 bits (690), Expect = 3e-70, Method: Composition-based stats. Identities = 76/392 (19%), Positives = 143/392 (36%), Gaps = 41/392 (10%) Query: 3 GTLLIDQYEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFHIWHDGDD 57 + YE QL K +R++ ++ + + + + YR + I Sbjct: 83 CQIPELSYEGQLKFKFNRVKSVISRIGKQDENKVLPVVSATHIVGYRNKMSIPIGTQNGK 142 Query: 58 LYHIMFDQQTKERMRIDYFMPGSLL-----------INALMIEMMATIRLEPLLRAKLFQ 106 + T E + M + IN I + + +R + + Sbjct: 143 AVSGYYKSGTHEIIPSTDCMIQNETNNKLAKFAQDFINKNKITVYNEKTHKGSVRHIVGR 202 Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD--- 163 I + IVT + W E + + + + +Q KT + L Sbjct: 203 IGD-GGKLMAVIVTSTNELPCKEKWIEEMRKSVPEVISIYHNVQD----KKTNVILGNKM 257 Query: 164 -RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNG 221 + ++ L + L + SF Q N + E L + +++ YCG G Sbjct: 258 EHIWGEKTLKASIGKLTFEISPYSFFQVNKEQAEKLYEKALDFANLFGDETVIDAYCGTG 317 Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281 SL LA+ V+ +EI K ++E A+ N N + NV+ ++ Sbjct: 318 TISLYLAQKAKHVIGIEIIKDAIENAKENAKRNKIKNVEFHAADVAKY------------ 365 Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILS-TT 338 L ++ + + + +DP R+G D+ + + I+Y+SCN + RD+ LS Sbjct: 366 LPELAKKGIKAEVMVLDPVRAGCDEKVIEAIGKINPERIVYVSCNVATQARDIERLSKKG 425 Query: 339 HTIERLALFDQFPYTRHMECGVLLVRKPSGWH 370 + + ++ D FP T H+E LL + H Sbjct: 426 YKLIKIQPIDMFPQTTHVETVALLYKLDVDKH 457 >gi|21910835|ref|NP_665103.1| putative RNA methyltransferase [Streptococcus pyogenes MGAS315] gi|28895474|ref|NP_801824.1| RNA methyltransferase [Streptococcus pyogenes SSI-1] gi|50401596|sp|Q8K6K7|Y1299_STRP3 RecName: Full=Uncharacterized RNA methyltransferase SpyM3_1299/SPs0562 gi|21905040|gb|AAM79906.1| putative RNA methyltransferase [Streptococcus pyogenes MGAS315] gi|28810720|dbj|BAC63657.1| putative RNA methyltransferase [Streptococcus pyogenes SSI-1] Length = 451 Score = 269 bits (689), Expect = 3e-70, Method: Composition-based stats. Identities = 82/386 (21%), Positives = 145/386 (37%), Gaps = 38/386 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIF-------RSEPIHYRMRAEFHIWHD 54 ++ Y +QL K D +RQ + F+ + F +P HYR + +F + Sbjct: 81 GCQIMHLAYPKQLDFKDDVIRQALKKFKPTGYEQFEIRPTLGMKKPDHYRAKLQFQLRSF 140 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGSLL---INALMIEMMATIRLEPLLRAKLFQIDYL- 110 G + +F Q + + ID + L I + +++ +L K+ I + Sbjct: 141 GGTVKAGLFSQGSHRLVPIDNCLVQDQLTQDIINKITQLVDKYKLPIYNERKIAGIRTIM 200 Query: 111 -----TSQSDQAIVTLIYHRLLDDAWRECAIRL---RDALHARKYQIQLIGRANKTKICL 162 S Q IV L + E + ++T+I Sbjct: 201 VRKAQASDQVQIIVVSSKEVRLANFIGELTKAFPQVKTVALNSNRSKSSEIYGDETEILW 260 Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGNG 221 ++ + E + G L +F Q N + E V A G + +++ YCG G Sbjct: 261 GQEAIHEEVLDYGFAL----SPRAFYQLNPQQTEVLYGEVVKALDVGSKDHIIDAYCGVG 316 Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281 + A V ++I ++E A+ N A +N +++ + Sbjct: 317 SIGFAFAGKVKSVRGMDIIPEAIEDAQKNAKAMGFDNAYYEAGKAEDIIPKWYK------ 370 Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTH 339 YR I VDPPR+GLDD + + ++Y+SCN +L RDL L+ + Sbjct: 371 ------QGYRADAIIVDPPRTGLDDKLLKTILHYQPKQMVYVSCNTSTLARDLVQLTKVY 424 Query: 340 TIERLALFDQFPYTRHMECGVLLVRK 365 + + D FP+T E V L ++ Sbjct: 425 DVHYIQSVDMFPHTARTEAVVKLQKR 450 >gi|209559750|ref|YP_002286222.1| RNA methyltransferase, TrmA family [Streptococcus pyogenes NZ131] gi|209540951|gb|ACI61527.1| RNA methyltransferase, TrmA family [Streptococcus pyogenes NZ131] Length = 451 Score = 269 bits (689), Expect = 3e-70, Method: Composition-based stats. Identities = 82/386 (21%), Positives = 145/386 (37%), Gaps = 38/386 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIF-------RSEPIHYRMRAEFHIWHD 54 ++ Y +QL K D +RQ + F+ + F +P HYR + +F + Sbjct: 81 GCQIMHLAYPKQLDFKDDVIRQALKKFKPTGYEQFEIRPTLGMKKPDHYRAKLQFQLRSF 140 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGSLL---INALMIEMMATIRLEPLLRAKLFQIDYL- 110 G + +F Q + + ID + L I + +++ +L K+ I + Sbjct: 141 GGTVKAGLFSQGSHRLVPIDNCLVQDQLTQDIINKITQLVDKYKLPIYNERKIAGIRTIM 200 Query: 111 -----TSQSDQAIVTLIYHRLLDDAWRECAIRL---RDALHARKYQIQLIGRANKTKICL 162 S Q IV L + E + ++T+I Sbjct: 201 VRKAQASDQVQIIVVSSKEVRLANFIGELTKAFPQVKTVALNSNRSKSSEIYGDETEILW 260 Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGNG 221 ++ + E + G L +F Q N + E V A G + +++ YCG G Sbjct: 261 GQEAIHEEVLDYGFAL----SPRAFYQLNPQQTEVLYGEVVKALDVGSKDHIIDAYCGVG 316 Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281 + A V ++I ++E A+ N A +N +++ + Sbjct: 317 SIGFAFAGKVKSVRGMDIIPEAIEDAQKNAKAMGFDNAYYEAGKAEDIIPKWYK------ 370 Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTH 339 YR I VDPPR+GLDD + + ++Y+SCN +L RDL L+ + Sbjct: 371 ------QGYRADAIIVDPPRTGLDDKLLKTILHYQPKQMVYVSCNTSTLARDLVQLTKVY 424 Query: 340 TIERLALFDQFPYTRHMECGVLLVRK 365 + + D FP+T E V L ++ Sbjct: 425 DVHYIQSVDMFPHTARTEAVVKLQKR 450 >gi|125718271|ref|YP_001035404.1| RNA methyltransferase [Streptococcus sanguinis SK36] gi|125498188|gb|ABN44854.1| RNA methyltransferase, putative [Streptococcus sanguinis SK36] Length = 456 Score = 269 bits (689), Expect = 3e-70, Method: Composition-based stats. Identities = 76/384 (19%), Positives = 152/384 (39%), Gaps = 40/384 (10%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQV-----PNLQIFRSEPIHYRMRAEFHIWHDGDDLY 59 L Y QL K +++ + + P+ YR +A+ + L Sbjct: 83 LGHLNYPAQLDFKRKQVKDSLYKIAGLSDVEVAPTLGMEHPLGYRNKAQVPVRRVNGQLE 142 Query: 60 HIMFDQQTKERMRIDYFMPGSLLINALMI---EMMATIRLEP--------LLRAKLFQID 108 F + + + + I+ F +I+ +++ ++ L+P L+R + + Sbjct: 143 TGFFRKNSHDLLPIEDFYIQDPVIDQVILFTRNLLRRFDLKPYDEQEKTGLIRNLVVRRG 202 Query: 109 YLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR 164 + + + +VT + L + E ++ + Q + + Sbjct: 203 HYSGEIMVILVTTRPKIFRVEQLMECLTEAFPAIKSIMQNINDQPGNAIFGKDWRTLYGQ 262 Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNF 223 +Y+ +++ ++ +F Q N + + + + ++ D+ L+ Y G G Sbjct: 263 NYITDQMLGND----FQIAAPAFYQINTEMAEKLYQTAIDFSELTADDVVLDAYSGIGTI 318 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 L +A+ +V VE+ +VE +R N A N + N V ++E Q +E Sbjct: 319 GLSVAKQVKQVYGVEVIPEAVENSRKNAAINGITNASYVCAPAEEAIQNWLKE------- 371 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGM-VQAYP-HILYISCNPDSLCRDLSILST-THT 340 + I VDPPR GL ++ + V P I YISCN ++ RD+ + + Sbjct: 372 -----GIQADVILVDPPRKGLTESFIKASVSMEPKKITYISCNVATMARDIKLYQELGYE 426 Query: 341 IERLALFDQFPYTRHMECGVLLVR 364 ++++ D FP T H+E LLVR Sbjct: 427 LKKVQPVDLFPQTHHVEAVSLLVR 450 >gi|94990944|ref|YP_599044.1| tRNA (Uracil-5-) -methyltransferase [Streptococcus pyogenes MGAS10270] gi|94544452|gb|ABF34500.1| tRNA (Uracil-5-) -methyltransferase [Streptococcus pyogenes MGAS10270] Length = 451 Score = 269 bits (689), Expect = 4e-70, Method: Composition-based stats. Identities = 82/386 (21%), Positives = 145/386 (37%), Gaps = 38/386 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIF-------RSEPIHYRMRAEFHIWHD 54 ++ Y +QL K D +RQ + F+ + F +P HYR + +F + Sbjct: 81 GCQIMHLAYPKQLDFKDDVIRQALKKFKPTGYEQFEIRPTLGMKKPDHYRAKLQFQLRSF 140 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGSLL---INALMIEMMATIRLEPLLRAKLFQIDYL- 110 G + +F Q + + ID + L I + +++ +L K+ I + Sbjct: 141 GGTVKAGLFSQGSHRLVPIDNCLVQDQLTQDIINKITQLVDKYKLPIYNERKIAGIRTIM 200 Query: 111 -----TSQSDQAIVTLIYHRLLDDAWRECAIRL---RDALHARKYQIQLIGRANKTKICL 162 S Q IV L + E + ++T+I Sbjct: 201 VRKAQASDQVQIIVVSSKEVRLANFIGELTKAFPQVKTVALNSNRSKSSEIYGDETEILW 260 Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGNG 221 ++ + E + G L +F Q N + E V A G + +++ YCG G Sbjct: 261 GQEAIHEEVLDYGFAL----SPRAFYQLNPQQTEVLYGEVVKALDVGSKDHIIDAYCGVG 316 Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281 + A V ++I ++E A+ N A +N +++ + Sbjct: 317 SIGFAFAGKVKSVRGMDIIPEAIEDAQKNAKAMGFDNAYYEAGKAEDIIPKWYK------ 370 Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTH 339 YR I VDPPR+GLDD + + ++Y+SCN +L RDL L+ + Sbjct: 371 ------QGYRADAIIVDPPRTGLDDKLLKTILHYQPKQMVYVSCNTSTLARDLVQLTKVY 424 Query: 340 TIERLALFDQFPYTRHMECGVLLVRK 365 + + D FP+T E V L ++ Sbjct: 425 DVHYIQSVDMFPHTARTEAVVKLQKR 450 >gi|296111690|ref|YP_003622072.1| RNA methyltransferase [Leuconostoc kimchii IMSNU 11154] gi|295833222|gb|ADG41103.1| RNA methyltransferase [Leuconostoc kimchii IMSNU 11154] Length = 464 Score = 269 bits (689), Expect = 4e-70, Method: Composition-based stats. Identities = 83/376 (22%), Positives = 146/376 (38%), Gaps = 33/376 (8%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVP---NLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ 65 +Y+ QLA K ++ QM VP I ++P YR +A+ + L + + Sbjct: 99 KYDAQLAFKQHQIEQMFKKVNVPVEVKPTIGMADPTKYRNKAQVPVQLINGRLETGFYRR 158 Query: 66 QTKERMRIDYFMPGSLLINALMIEMMATI-------RLEPLLRAKLFQIDYLTSQ-SDQA 117 + + + ++ F ++ + + E + + I S + Sbjct: 159 GSHKLVPVEDFYIQDPKVDEAVTVTRDILRDLGLSAYDEETNKGVVRHIMARRGYYSHEL 218 Query: 118 IVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD----YVDERLTV 173 +V +I + +E A RL+ L K I I + T + + + + ++ + Sbjct: 219 MVVIITNTKKLPEEQEIATRLQAKLPELKSFIHNINN-HDTNVIMGQWNETVWGEDEIHD 277 Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNFSLVLARHFD 232 + NSF Q N + A +++ Y G G +L +A Sbjct: 278 QLMGKDFVIGPNSFYQVNPQTTATLYTLAAEKAGLKKTDTVVDAYSGIGTITLSIADKVK 337 Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292 ++ VE+ + +VE A N NH++NV+ V + E + + Sbjct: 338 KIYGVEVVENAVEDAEKNAKNNHIDNVEFVTADAPEQMVKWAED------------GLKP 385 Query: 293 KTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDL-SILSTTHTIE-RLALFD 348 +FVDPPR GL + V A +YISCNP +L RD IL+ I+ + D Sbjct: 386 NVVFVDPPRKGLTSELISAVSAMKPETFVYISCNPATLARDAVQILAEGFEIDGAVQPLD 445 Query: 349 QFPYTRHMECGVLLVR 364 QFP T H+E + R Sbjct: 446 QFPQTTHVESVTVFKR 461 >gi|322389307|ref|ZP_08062867.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus parasanguinis ATCC 903] gi|321144051|gb|EFX39469.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus parasanguinis ATCC 903] Length = 452 Score = 269 bits (688), Expect = 4e-70, Method: Composition-based stats. Identities = 71/379 (18%), Positives = 153/379 (40%), Gaps = 40/379 (10%) Query: 10 YEQQLAEKVDRLRQMMLAFQV-----PNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 Y +QL K +++ + L + P+ YR +A+ + + F Sbjct: 88 YPEQLKFKAKQVKDSLYKMAGISDIDVPLTLGMDHPVQYRNKAQVPVRRVNGQVETGFFR 147 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIR-----------LEPLLRAKLFQIDYLTSQ 113 + + + M I+ F +I+ +++ + IR L+R + + + + + Sbjct: 148 KNSHDLMPIEDFYIQDPVIDQVVLALRDLIRRFDLKPYDEQEQSGLIRNLVVRRGHHSGE 207 Query: 114 SDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDE 169 +VT + L + + ++ + Q + ++ +DY+ + Sbjct: 208 IMVILVTTRPKVFRVDQLIEQLIKQFPAIKSVMQNINDQNTNAIFGKEWRVLYGQDYITD 267 Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLA 228 ++ ++ +F Q N + + + + + + D+ ++ Y G G L +A Sbjct: 268 QMLGN----SFQISGPAFYQVNTEMAEKLYQTAIDFAELREDDVVIDAYSGIGTIGLSVA 323 Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288 +H V VE+ +VE ++ N A N++ N V +++ + +E Sbjct: 324 KHVKEVYGVEVIPEAVENSQKNAALNNITNAHYVCDTAENAMKNWLKE------------ 371 Query: 289 SYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST-THTIERLA 345 + I VDPPR GL ++ + I YISCN ++ RD+ + + ++++ Sbjct: 372 GIQPTAILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMARDIKLYQELGYELKKVQ 431 Query: 346 LFDQFPYTRHMECGVLLVR 364 D FP T H+EC LLV+ Sbjct: 432 PVDLFPQTHHVECVSLLVK 450 >gi|24379246|ref|NP_721201.1| putative RNA methyltransferase [Streptococcus mutans UA159] gi|50401575|sp|Q8DUV4|Y788_STRMU RecName: Full=Uncharacterized RNA methyltransferase SMU_788 gi|24377161|gb|AAN58507.1|AE014920_5 putative RNA methyltransferase [Streptococcus mutans UA159] Length = 451 Score = 269 bits (688), Expect = 4e-70, Method: Composition-based stats. Identities = 81/379 (21%), Positives = 146/379 (38%), Gaps = 40/379 (10%) Query: 10 YEQQLAEKVDRLRQMMLAF-QVPNLQI----FRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 Y QQL K ++ + + ++++ P YR +A+ + L F Sbjct: 88 YGQQLNFKRKQVINSLSKIAGISDIEVADTLGMDNPTAYRNKAQVPVRRVNGQLETGFFR 147 Query: 65 QQTKERMRIDYFMPGSLLINAL---MIEMMATIRLEP--------LLRAKLFQIDYLTSQ 113 + + M I+ + I+ L +++ L+P L+R + + + T Q Sbjct: 148 KNSHALMPIEDYYIQDKEIDRLINFTRDLLRRFDLKPYDEKEQTGLIRNLVVRRGHYTGQ 207 Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD----YVDE 169 +VT + E ++ A K IQ I T + Y ++ Sbjct: 208 IMLVLVTTRSKIFRIEQMIE---KIISEFPAVKSIIQNIND-RNTNAIFGSEFRTLYGED 263 Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLA 228 + Y SF Q N + + + + + D +++ Y G G L A Sbjct: 264 TIEDTMLGNRYIISAQSFYQVNTVMAEKLYQTAIDFSDLTPDDTVIDAYSGIGTIGLSFA 323 Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288 + V VE+ + +V A N A N++ NV V S+++ + + Sbjct: 324 KKVKDVYGVEVIEAAVRDAEKNAALNNITNVHYVADSAEKAMASWSK------------R 371 Query: 289 SYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILST-THTIERLA 345 + I VDPPR GL ++ + A I YISC P ++ RD+ + + + ++ Sbjct: 372 GIKPDVILVDPPRKGLTESFIEASTAMQPRKITYISCAPATMARDVKLYEELGYKLVKVQ 431 Query: 346 LFDQFPYTRHMECGVLLVR 364 D FP T H+EC LLV+ Sbjct: 432 PVDLFPQTHHVECVALLVK 450 >gi|312134353|ref|YP_004001691.1| RNA methyltransferase, TrmA family [Caldicellulosiruptor owensensis OL] gi|311774404|gb|ADQ03891.1| RNA methyltransferase, TrmA family [Caldicellulosiruptor owensensis OL] Length = 451 Score = 269 bits (688), Expect = 4e-70, Method: Composition-based stats. Identities = 75/385 (19%), Positives = 154/385 (40%), Gaps = 38/385 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWHDGDD 57 L+ +Y+ QL+ K + + +I +P YR + + D + Sbjct: 80 GCHLMHAKYQYQLSLKKLLVEDAFRRIGKLSPRINDVIGMEKPFRYRNKTALPVGGDYKN 139 Query: 58 LYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLFQ 106 + + T + + IDY + LI IE+ + + + +LR + + Sbjct: 140 PQIGFYKKMTHDIVDIDYCLIQHEVCDDVIKGMKDLIRKYNIEVYSEKKHQGVLRHIVVR 199 Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY 166 + ++ ++ L+ + + + + + K + I + D Sbjct: 200 NSFA---FNEMMIILVCTK-VPENLETIKKDILNKFPKIKSLYVNLNPKRTNVILGEEDI 255 Query: 167 VDE---RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGN 222 + + L + SF Q N+ + V+ + I + + ++Y G G Sbjct: 256 LIWGSSTIKDKIGNLTFEISPKSFFQVNSVQTEVLYSQVVKYIRNIDAEIVFDVYSGIGT 315 Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282 S+ +A +V A+EI + +VE A+ + N ++N++ + S++ + Sbjct: 316 ISMFVAPFCKKVYAIEIVEDAVEDAKKSSKNNGISNIEFICGSAE------------IEI 363 Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILS-TTH 339 + + + +DPPRSG + + + Q P+I+Y+SCNP +L RD SIL + Sbjct: 364 PKLMKSGIIPQAVILDPPRSGCEKELLESLIKQKIPNIIYVSCNPSTLARDSSILCSNGY 423 Query: 340 TIERLALFDQFPYTRHMECGVLLVR 364 + + D FP T H+EC LL + Sbjct: 424 EVVEVQPVDMFPQTFHVECVALLKK 448 >gi|326391400|ref|ZP_08212937.1| RNA methyltransferase, TrmA family [Thermoanaerobacter ethanolicus JW 200] gi|325992535|gb|EGD50990.1| RNA methyltransferase, TrmA family [Thermoanaerobacter ethanolicus JW 200] Length = 450 Score = 269 bits (688), Expect = 5e-70, Method: Composition-based stats. Identities = 87/394 (22%), Positives = 159/394 (40%), Gaps = 52/394 (13%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ---IFRSEPIH-YRMRAEFHIWHDGDD 57 T Y+ QL K D L+++ + + I +S H YR + E+ D + Sbjct: 79 GCTYQNVSYQDQLKIKEDILKKLFEKEGITEYEFLGIVKSPKEHGYRNKMEYTFGKDKEG 138 Query: 58 LYHIMFDQQT---------KERMRIDYFMPGSLLINALMIE----MMATIRLEPLLRAKL 104 + ++ K + D F+ L I+ E LR + Sbjct: 139 NAALGLHRKGRFYEVIMTDKCNIVEDDFLKALNLTFDYAIKKALPFYDKKTHEGFLRHLV 198 Query: 105 FQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIR---------LRDALHARKYQIQLIGRA 155 + S+S + ++ ++ L + E R L LH + Sbjct: 199 VRK---ASKSGEILLNIVTTTQLQHDFTELIERYKNANFGSRLVGVLHTQNDSWSDAVVC 255 Query: 156 NKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LL 214 + ++ RDY+ E + L ++ SF Q N+ + E V + + Sbjct: 256 ERLEVLYGRDYLIEEIL----DLKFKISAFSFFQTNSYGAEKLYETVREFAGDVSDKIVF 311 Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274 +LY G G +++A +V+ +E+ + +V +AR N N + N + + Sbjct: 312 DLYSGTGTIGIIMAPMAKKVIGIELVEEAVMSARENAELNGLKNCTFIAGDVSK------ 365 Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCRDL 332 +LK+I + VDPPRSG++ + +++ P ++Y+SCNP+SL RDL Sbjct: 366 ------KLKEI---KEMPDVVIVDPPRSGINPKALEDIIKFNPQKVVYVSCNPESLARDL 416 Query: 333 SILST-THTIERLALFDQFPYTRHMECGVLLVRK 365 I S + ++++ D FP+T H+E VL+ RK Sbjct: 417 KIFSEGGYKVDKVKCVDMFPHTHHVETVVLMERK 450 >gi|332638824|ref|ZP_08417687.1| tRNA (uracil-5-)-methyltransferase related enzyme [Weissella cibaria KACC 11862] Length = 455 Score = 269 bits (688), Expect = 5e-70, Method: Composition-based stats. Identities = 90/385 (23%), Positives = 154/385 (40%), Gaps = 43/385 (11%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWHDGDDLYH 60 L Y+ QL K ++++++ Q ++++ P YR +A+ +L Sbjct: 88 LAHLNYDAQLRFKQNQIQELFKK-QHVDVEVSETLGMENPTGYRNKAQIPTRELRGELTT 146 Query: 61 IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKLFQIDY 109 F + + M I+ F I+ ++ + +R ++R + + Y Sbjct: 147 GFFRRGSHNLMPIEDFYIQDPEIDKAIVVIRDILRKYHIPAYNEFEHTGVIRNIMVRRGY 206 Query: 110 LTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD---- 165 + + +VT + +R+AL K IQ + + KT + L Sbjct: 207 YSHEMMVVLVTRSKKVPGAEMIVAD---IREALPEVKSIIQNVNQ-EKTNVILGEKNNTL 262 Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNF 223 + + +T + NSF Q N L + A G+ GD +++ Y G G Sbjct: 263 WGKDVITDTLFGKKFVIGPNSFYQVNP-QTTETLYQLAADKAGLTGDEEVIDAYSGIGTI 321 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 SL +A VL VE+ +V+ A+ N N VNN K ++E ++ Sbjct: 322 SLTIADRVKSVLGVEVVPGAVDDAKRNADINGVNNAKFELGKAEE------------KMV 369 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRD-LSILSTTHT 340 + R IFVDPPR GL + +YISCNP +L RD + IL + Sbjct: 370 EWHEAGMRPDVIFVDPPRKGLTPELIDAATGMEPEKFVYISCNPATLARDTVQILENGYH 429 Query: 341 IER-LALFDQFPYTRHMECGVLLVR 364 I+ + DQFP T H+E + V+ Sbjct: 430 IQGPVQPIDQFPQTTHIESVTVFVK 454 >gi|304385359|ref|ZP_07367704.1| 23S rRNA (uracil-5-)-methyltransferase [Pediococcus acidilactici DSM 20284] gi|304328566|gb|EFL95787.1| 23S rRNA (uracil-5-)-methyltransferase [Pediococcus acidilactici DSM 20284] Length = 455 Score = 269 bits (688), Expect = 5e-70, Method: Composition-based stats. Identities = 72/378 (19%), Positives = 147/378 (38%), Gaps = 39/378 (10%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ 65 Y QL K +++ ++ + +++ P YR +A+ + L F + Sbjct: 93 YPAQLKFKQTQIKNLLQKSHLEQIEVAETVGMENPTGYRNKAQVPVRKVKGQLATGFFKR 152 Query: 66 QTKERMRIDYFMPGSLLINA-----------LMIEMMATIRLEPLLRAKLFQIDYLTSQS 114 + + + I+ F +I+ IE I ++R + + + + Sbjct: 153 GSHDLVPIEDFYIQDPVIDQVILKVRDILREYQIEPYDEINQRGVVRNIMVRRGRRSGEI 212 Query: 115 DQAIVTL---IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERL 171 ++T + H A + + + + + ++ + + L Sbjct: 213 MVVLITRTSSVSHLDEIAAAIHQIDGVVSVIQNINPKQTNVIMGKEDRLLAGESVIHDEL 272 Query: 172 TVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNFSLVLARH 230 + +SF Q N + + + A + +L++Y G G SL +A+ Sbjct: 273 L----GQKFIISAHSFYQVNPVQTEKLYQLAIEKAGLTGKETVLDVYSGIGTISLAMAQA 328 Query: 231 FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY 290 +V VEI K +V+ A+ N N NVK V +++ + E Sbjct: 329 AKKVYGVEIVKEAVQDAKVNAVQNQAKNVKFVVGKAEDQMAKWQAE------------GM 376 Query: 291 RFKTIFVDPPRSGLDDATVGM--VQAYPHILYISCNPDSLCRDLSIL-STTHTIER-LAL 346 + + VDPPR GLD++ + A ++Y+SCNP +L RD+ + + +++ + Sbjct: 377 QPDVVVVDPPRKGLDESVINATVAMAPKRVVYVSCNPATLVRDIDRFQAQGYKVDQPITP 436 Query: 347 FDQFPYTRHMECGVLLVR 364 DQFP T H+E ++ R Sbjct: 437 VDQFPQTPHVESVTVMSR 454 >gi|15613460|ref|NP_241763.1| RNA methyltransferase [Bacillus halodurans C-125] gi|50401683|sp|Q9KEF5|Y897_BACHD RecName: Full=Uncharacterized RNA methyltransferase BH0897 gi|10173512|dbj|BAB04616.1| RNA methyltransferase [Bacillus halodurans C-125] Length = 463 Score = 269 bits (688), Expect = 5e-70, Method: Composition-based stats. Identities = 73/388 (18%), Positives = 147/388 (37%), Gaps = 42/388 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN-------LQIFRSEPIHYRMRAEFHIWHD 54 L YE L EK + ++Q I +P YR +++ + + Sbjct: 88 GCQLQHLSYEATLKEKREIVKQAFERHTTLRADTLTILPTIGMEDPWAYRNKSQLQLKTE 147 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGS-----------LLINALMIEMMATIRLEPLLRAK 103 + ++ T + + + + ++ L I + +LR+ Sbjct: 148 KGQVKAGLYVMNTHKLVDLSSCLVQHDATNEASEVVKQIVQDLQIPTYNERKRTGILRSV 207 Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD 163 + ++ + ++ + V L+ + ++ L K Q I KT + + Sbjct: 208 VSRVGF---ETGELQVILVTTKKDFPKKDLLVEEIKSRLPHVKSLQQNINP-KKTSLIMG 263 Query: 164 RD----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWV-LAATKGIQGDLLELYC 218 + + +E + + + +F Q N V + V AA + +++ YC Sbjct: 264 DETISLFGEETIEETLGDISFSLSARAFFQLNPKQTVKLYNEVKRAAALTGKEKVIDAYC 323 Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278 G G L LA V +++ ++E A+ N + NV+ +++ + R Sbjct: 324 GVGTIGLWLADQAREVRGMDVIAEAIEDAKENAKRQGITNVQYEVGKAEKIIPSWVR--- 380 Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILS 336 S+ I VDPPR+G DD + ++ I+Y+SCNP +L +D+ L Sbjct: 381 ---------SSWIPDVIVVDPPRTGCDDQLLKTIKQTKPKRIVYVSCNPSTLAKDVEQLQ 431 Query: 337 T-THTIERLALFDQFPYTRHMECGVLLV 363 + ++ + D FP+T +E LLV Sbjct: 432 RSGYKVKNIQPVDMFPWTAQVESCTLLV 459 >gi|256850547|ref|ZP_05555973.1| RNA methyltransferase [Lactobacillus crispatus MV-1A-US] gi|256712570|gb|EEU27565.1| RNA methyltransferase [Lactobacillus crispatus MV-1A-US] Length = 451 Score = 269 bits (688), Expect = 5e-70, Method: Composition-based stats. Identities = 71/382 (18%), Positives = 154/382 (40%), Gaps = 30/382 (7%) Query: 3 GTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFR----SEPIHYRMRAEFHIWHDGDDL 58 +L +Y++QL K +++ ++ + +++ + E YR +A+ + L Sbjct: 82 ASLAHIKYDKQLEFKRNQVVNLLKKAHLDEIEVGQTLPSPEQTGYRNKAQVPVREYNGQL 141 Query: 59 YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRL------EPLLRAKLFQIDYLTS 112 F + + + + + F I+ +++ + +R + + + + + Sbjct: 142 EIGFFRRHSHDLVPLTNFFTTDPEIDRVLVAVRDVLRKYKIAPYDEVNNTGIIRYLDVRR 201 Query: 113 QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR-DYV---D 168 + +I + D + + + + + L KT + L + DY+ + Sbjct: 202 SKANGEIMVILVSRVKDFPQMMGVAAEISQIPKVSGLVLNYNPKKTNVILGKKDYLVFGN 261 Query: 169 ERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELYCGNGNFSLVL 227 +++T L +R SF Q N+ + + + A G +++ Y G G L + Sbjct: 262 DQITDQIGDLKFRISPQSFFQINSLQTPRLYDLAIKQADLGSDDVVIDAYSGIGTIGLSV 321 Query: 228 ARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDI 287 A+H V +E+ + +++ A+ N N + N K ++E + Sbjct: 322 AKHVKAVRGIEVVRDAIKDAKDNAELNGIENAKYYLGKAEEIMPRWAK------------ 369 Query: 288 HSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STTHTIERL 344 + +FVDPPR GL + ++YISCNP ++ RDL + + +R+ Sbjct: 370 KGMKTDVVFVDPPRKGLTPEFINATVKTGPKKVVYISCNPATMIRDLLLFQEQGYEFKRI 429 Query: 345 ALFDQFPYTRHMECGVLLVRKP 366 D FP T H+E +L +K Sbjct: 430 DPVDMFPQTPHVEAVTVLTKKK 451 >gi|238925373|ref|YP_002938890.1| RNA methyltransferase [Eubacterium rectale ATCC 33656] gi|238877049|gb|ACR76756.1| RNA methyltransferase [Eubacterium rectale ATCC 33656] Length = 418 Score = 269 bits (687), Expect = 5e-70, Method: Composition-based stats. Identities = 74/374 (19%), Positives = 147/374 (39%), Gaps = 34/374 (9%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDG-DDLYHIMFDQQT 67 +Y++QL K +++++ F + P++YR + + + + T Sbjct: 56 EYKEQLKTKQAYMKKLLKPFCFVEPIVGMKNPLYYRHKVHAAFDCTRRGQIVAGAYRKNT 115 Query: 68 KERMRIDYFMP----GSLLINAL-------MIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116 + + I+ M +I + I+ LLR L + Y T Q Sbjct: 116 HDVVDIESCMIEEQESDEIIRDIKDMLRSFRIKTYDEDTGYGLLRHVLVRKGYATG---Q 172 Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD---YVDERLTV 173 +V L+ + + LR + + + + DR+ Y + Sbjct: 173 IMVVLVLASPILPSKNNFVKALRKKHPNITTVVLNVNDKKTSMVLGDRNITLYGKGFIED 232 Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELYCGNGNFSLVLARHFD 232 +R SF Q N + E + A + +++ YCG G ++ A++ Sbjct: 233 KLCGCTFRISPGSFYQVNPVQTELLYEKAIHEAHLTGKERIIDAYCGTGTIGIIAAKNAG 292 Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292 V+ VE+ + ++ A N N + N++ + +F M + + Sbjct: 293 EVIGVELNRDAIRDAVINAKRNDIRNIRFYNDDAGKFMVEMAQ------------KGEKA 340 Query: 293 KTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST-THTIERLALFDQ 349 + +DPPR+G D+A + V + ++Y+SC P++L RDL L+ +T++R +D Sbjct: 341 DVVIMDPPRTGSDEAFLSSVVKLSPERVVYVSCGPETLARDLKYLTKHGYTVKRATPYDC 400 Query: 350 FPYTRHMECGVLLV 363 FP+T H+E L Sbjct: 401 FPFTSHIETVCCLT 414 >gi|320547084|ref|ZP_08041380.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus equinus ATCC 9812] gi|320448210|gb|EFW88957.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus equinus ATCC 9812] Length = 455 Score = 269 bits (687), Expect = 6e-70, Method: Composition-based stats. Identities = 79/379 (20%), Positives = 149/379 (39%), Gaps = 40/379 (10%) Query: 10 YEQQLAEKVDRLRQMMLAF-QVPNLQI----FRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 Y +QL K ++ + + ++++ P YR +A+ + L F Sbjct: 88 YSEQLKFKRKQVADNLYKIAGISDVEVAETLGMEHPYAYRNKAQVPVRRVNGQLETGFFR 147 Query: 65 QQTKERMRIDYFMPGSLLINAL---MIEMMATIRLEP--------LLRAKLFQIDYLTSQ 113 + + + M I F + I+ L +++ L+P L+R + + Y + Sbjct: 148 KHSHDLMPISDFYIQNKEIDRLINFTRDLLRRFDLKPYDEKEQTGLIRNLVVRRGYYSG- 206 Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD----YVDE 169 + ++ + R + ++ A K +Q I N T D Y + Sbjct: 207 --EMMLVFVTTRPKIFRIEQIIEKIVAEFPAVKSIVQNINDKN-TNAIFGNDFRTLYGKD 263 Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLA 228 + + Y SF Q N + + + + + D +++ Y G G L A Sbjct: 264 TIVDSMLGNQYEISARSFYQVNTEMAEKLYQTAIDFSDLTADDIVIDAYSGIGTIGLSFA 323 Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288 ++ V VE+ + +VE A+ N A N + N V S++ + + Sbjct: 324 KNVKAVYGVEVIEEAVEDAKRNAALNGITNAHYVADSAEHAMATWSK------------N 371 Query: 289 SYRFKTIFVDPPRSGLDDATVGM-VQAYP-HILYISCNPDSLCRDLSILST-THTIERLA 345 + I VDPPR GL + + V P + YISCNP ++ RD+ + + ++++ Sbjct: 372 GIKPSVILVDPPRKGLTENFIKASVAMQPEKVTYISCNPATMARDIKLYQELGYKLQKVQ 431 Query: 346 LFDQFPYTRHMECGVLLVR 364 D FP T H+E VLL + Sbjct: 432 PVDLFPNTHHVETVVLLSK 450 >gi|332523114|ref|ZP_08399366.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus porcinus str. Jelinkova 176] gi|332314378|gb|EGJ27363.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus porcinus str. Jelinkova 176] Length = 451 Score = 269 bits (687), Expect = 6e-70, Method: Composition-based stats. Identities = 79/387 (20%), Positives = 139/387 (35%), Gaps = 40/387 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54 ++ Y +QL K D +RQ + FQ + I EP HYR + +F Sbjct: 82 GCQIMHLAYPKQLDFKDDVIRQSLKKFQPQGFENFTIKHTIGMVEPWHYRAKLQFQTRSF 141 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGS-----------LLINALMIEMMATIRLEPLLRAK 103 G ++ +F + + + I+ + L+ I + + LR Sbjct: 142 GGKVHAGLFAEGSHRLISIENCLVQDSTTQAIINDIVCLLERHRIPIYNERHIAG-LRTV 200 Query: 104 LFQIDYLTSQSDQAIVT--LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161 + + + Q VT ++ L ++ +T+I Sbjct: 201 MIRKGQSSGQVQLIFVTSKELHIAPLVKELVANFEEIKTVAINYNRSKTSGLYGERTEII 260 Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGN 220 + E + + +F Q N + E V A +++ YCG Sbjct: 261 WGK----ETINEDVLDYSFALSPRAFYQLNPQQTEVLYSEVVKALEVSENDQIIDAYCGV 316 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G A+H + ++I ++ A+ N A N +++ +E Sbjct: 317 GTIGFAFAKHVKSIRGMDIIPEAIADAKKNAKAMGFTNTYYETGKAEDLIPKWYQE---- 372 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTT 338 YR I VDPPR+GLD+ + V Y ++Y+SCN +L RDL L+ Sbjct: 373 --------GYRADAIIVDPPRTGLDERLLETVVKYQPEKMVYVSCNTSTLARDLVTLAKF 424 Query: 339 HTIERLALFDQFPYTRHMECGVLLVRK 365 + +E + D FP+T E V L +K Sbjct: 425 YQVEYIQSVDMFPHTARTEAVVKLQKK 451 >gi|320529040|ref|ZP_08030132.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Selenomonas artemidis F0399] gi|320138670|gb|EFW30560.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Selenomonas artemidis F0399] Length = 457 Score = 269 bits (687), Expect = 6e-70, Method: Composition-based stats. Identities = 73/388 (18%), Positives = 128/388 (32%), Gaps = 45/388 (11%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56 L YE QL K ++ M + + P +YR + +F + Sbjct: 85 GCQLQHLSYEAQLTAKRLQVVDAMTHIGKLPHVPVKETLGAASPWNYRNKMQFPVGIHQG 144 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALM-------IEMMATIRLEPLLRAKLFQIDY 109 + F Q + + + NAL ++ + E R L I Sbjct: 145 QIVVGCFAQGSHRIIDTEDCHIQREGNNALANAVRDIVTKLRIPVYNEDTHRGILRHIVG 204 Query: 110 LTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQL-------IGRANKTKICL 162 Q D+ + ++ ++ +R+ L Q + T + Sbjct: 205 RVGQGDELMAVIVTAAKELPRKKKLIRMMRERLPQLVSIQQNIQTYRNNVVMGRDTVLLW 264 Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNG 221 + + + L L + SF Q N + E L A +++ YCG G Sbjct: 265 GKPTIRDTLG----KLSFHISPRSFFQVNTAQAAVLYEQALQYADLHGTETVIDAYCGTG 320 Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE----- 276 +L LA+ V +EI +P++ AR N N + N + + + ++ R+ Sbjct: 321 TITLFLAQRARNVYGIEIVRPAILDARKNARDNGIKNAEFIVGDATAVMPSLYRQGVRPD 380 Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILS 336 K PR I+Y+SCNP +L RDL+I+ Sbjct: 381 VVVVDPPRAGCTPTVLKNFANMKPR---------------RIVYVSCNPATLARDLAIMK 425 Query: 337 T-THTIERLALFDQFPYTRHMECGVLLV 363 + + D FP T H+EC + Sbjct: 426 DLGYEAREIQPVDLFPQTSHVECVAWMT 453 >gi|262047051|ref|ZP_06020010.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus crispatus MV-3A-US] gi|293381908|ref|ZP_06627876.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus crispatus 214-1] gi|312984350|ref|ZP_07791691.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus crispatus CTV-05] gi|260572628|gb|EEX29189.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus crispatus MV-3A-US] gi|290921555|gb|EFD98589.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus crispatus 214-1] gi|310894244|gb|EFQ43325.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus crispatus CTV-05] Length = 449 Score = 269 bits (687), Expect = 6e-70, Method: Composition-based stats. Identities = 71/382 (18%), Positives = 154/382 (40%), Gaps = 30/382 (7%) Query: 3 GTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFR----SEPIHYRMRAEFHIWHDGDDL 58 +L +Y++QL K +++ ++ + +++ + E YR +A+ + L Sbjct: 80 ASLAHIKYDKQLEFKRNQVVNLLKKAHLDEIEVGQTLPSPEQTGYRNKAQVPVREYNGQL 139 Query: 59 YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRL------EPLLRAKLFQIDYLTS 112 F + + + + + F I+ +++ + +R + + + + + Sbjct: 140 EIGFFRRHSHDLVPLTNFFTTDPEIDRVLVAVRDVLRKYKIAPYDEVNNTGIIRYLDVRR 199 Query: 113 QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR-DYV---D 168 + +I + D + + + + + L KT + L + DY+ + Sbjct: 200 SKANGEIMVILVSRVKDFPQMMGVAAEISQIPKVSGLVLNYNPKKTNVILGKKDYLVFGN 259 Query: 169 ERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELYCGNGNFSLVL 227 +++T L +R SF Q N+ + + + A G +++ Y G G L + Sbjct: 260 DQITDQIGDLKFRISPQSFFQINSLQTPRLYDLAIKQADLGSDDVVIDAYSGIGTIGLSV 319 Query: 228 ARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDI 287 A+H V +E+ + +++ A+ N N + N K ++E + Sbjct: 320 AKHVKAVRGIEVVRDAIKDAKDNAELNGIENAKYYLGKAEEIMPRWAK------------ 367 Query: 288 HSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STTHTIERL 344 + +FVDPPR GL + ++YISCNP ++ RDL + + +R+ Sbjct: 368 KGMKTDVVFVDPPRKGLTPEFINATVKTGPKKVVYISCNPATMIRDLLLFQEQGYEFKRI 427 Query: 345 ALFDQFPYTRHMECGVLLVRKP 366 D FP T H+E +L +K Sbjct: 428 DPVDMFPQTPHVEAVTVLTKKK 449 >gi|331003204|ref|ZP_08326711.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lachnospiraceae oral taxon 107 str. F0167] gi|330412857|gb|EGG92237.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lachnospiraceae oral taxon 107 str. F0167] Length = 470 Score = 269 bits (687), Expect = 6e-70, Method: Composition-based stats. Identities = 89/391 (22%), Positives = 152/391 (38%), Gaps = 41/391 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL-------QIFRSEPIHYRMRAEFHIWHD 54 TL Y +L K +++ + +L I EP YR +++F Sbjct: 87 GCTLQSLDYRAELRLKQNKVENHLKRIGRFDLSNVEIEEIIGMEEPYRYRNKSQFPFGRK 146 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGSLL-----------INALMIEMMATIRLEPLLRAK 103 F +T + D + G ++ ++ ++R Sbjct: 147 NGKNITGYFAGRTHSIVEFDDCIIGIEENKTVLKTVLDFMDKYRVDAYNEEDGSGIIRHV 206 Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRE-CAIRLRDALHARKYQIQ----LIGRANKT 158 L + + T + +V + + E L D L + I + ++T Sbjct: 207 LIRKGFATGELMVCVVINADNLPHNRELVESLCTVLGDNLKSVSININKKNTNVILGDRT 266 Query: 159 KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELY 217 R+Y+++ + + +R SF Q N + L A + + ++Y Sbjct: 267 FTIYGREYIEDYIG----DVKFRISPQSFYQVNPVQTKKLYGKALEYAALTGKETVWDMY 322 Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277 CG G SL LA+ V VEI +++ AR N N++ NVK ++E E Sbjct: 323 CGIGTISLFLAKSAKFVYGVEIVDAAIQNARENAKLNNIENVKFFVGKAEEIIT---GEY 379 Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSIL 335 E +KDID I VDPPR GLD + + I+Y+SC+ +L RDL IL Sbjct: 380 ENGNIKDID-------VIVVDPPRKGLDKLAIDTMLKLLPKRIVYVSCDSSTLARDLKIL 432 Query: 336 STT-HTIERLALFDQFPYTRHMECGVLLVRK 365 + +++L + DQF + H E V++ RK Sbjct: 433 CEKEYELKKLTVVDQFARSYHTESVVVMERK 463 >gi|227877027|ref|ZP_03995119.1| TrmA family tRNA (uracil-5-)-methyltransferase [Lactobacillus crispatus JV-V01] gi|256844662|ref|ZP_05550147.1| RNA methyltransferase [Lactobacillus crispatus 125-2-CHN] gi|227863398|gb|EEJ70825.1| TrmA family tRNA (uracil-5-)-methyltransferase [Lactobacillus crispatus JV-V01] gi|256613203|gb|EEU18407.1| RNA methyltransferase [Lactobacillus crispatus 125-2-CHN] Length = 449 Score = 269 bits (687), Expect = 6e-70, Method: Composition-based stats. Identities = 71/382 (18%), Positives = 154/382 (40%), Gaps = 30/382 (7%) Query: 3 GTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFR----SEPIHYRMRAEFHIWHDGDDL 58 +L +Y++QL K +++ ++ + +++ + E YR +A+ + L Sbjct: 80 ASLAHIKYDKQLEFKRNQVVNLLKKAHLDEIEVGQTLPSPEQTGYRNKAQVPVREYNGQL 139 Query: 59 YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRL------EPLLRAKLFQIDYLTS 112 F + + + + + F I+ +++ + +R + + + + + Sbjct: 140 EIGFFRRHSHDLVPLTNFFTTDPEIDRVLVAVRDVLRKYKIAPYDEVNNTGIIRYLDVRR 199 Query: 113 QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR-DYV---D 168 + +I + D + + + + + L KT + L + DY+ + Sbjct: 200 SKANGEIMVILVSRVKDFPQMMGVAAEISQIPKVSGLVLNYNPKKTNVILGKKDYLVFGN 259 Query: 169 ERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELYCGNGNFSLVL 227 +++T L +R SF Q N+ + + + A G +++ Y G G L + Sbjct: 260 DQITDQIGDLKFRISPQSFFQINSLQTPRLYDLAIKQADLGSDDVVIDAYSGIGTIGLSV 319 Query: 228 ARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDI 287 A+H V +E+ + +++ A+ N N + N K ++E + Sbjct: 320 AKHVKAVRGIEVVRDAIKDAKDNAELNGIENAKYYLGKAEEIMPRWAK------------ 367 Query: 288 HSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STTHTIERL 344 + +FVDPPR GL + ++YISCNP ++ RDL + + +R+ Sbjct: 368 KGMKTDVVFVDPPRKGLTPEFINATVKTGPKKVVYISCNPATMIRDLLLFQEQGYEFKRI 427 Query: 345 ALFDQFPYTRHMECGVLLVRKP 366 D FP T H+E +L +K Sbjct: 428 DPVDMFPQTPHVEAVTVLTKKK 449 >gi|329117144|ref|ZP_08245861.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus parauberis NCFD 2020] gi|326907549|gb|EGE54463.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus parauberis NCFD 2020] Length = 451 Score = 269 bits (687), Expect = 6e-70, Method: Composition-based stats. Identities = 79/387 (20%), Positives = 146/387 (37%), Gaps = 40/387 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54 ++ Y +QL K D +RQ + F+ + + EP HYR + +F Sbjct: 82 GCQIMHLAYPKQLVFKTDVIRQALKKFKPEGYESYPIRETLGMDEPWHYRAKLQFQTRQF 141 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----------LRAKL 104 G + +F + + + I+ + ++ ++ + L LR + Sbjct: 142 GGKIRAGLFAENSHHLVTIENCLVQDKDTQLVINSIVKLLDKHKLPIFNERKIDGLRTVM 201 Query: 105 FQIDYLTSQSDQAIVTLIYHRLLD---DAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161 + + + ++T RL D D +E + AL+ K + I T+I Sbjct: 202 IRKAVASKKIQVILITSKALRLTDFINDLVKEHPQIMTIALNHNKSKSSDI-YGESTEII 260 Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELYCGN 220 D ++E + + +F Q N + + + A +++ YCG Sbjct: 261 WGEDKIEEEVL----DYQFSLSPRAFYQLNPKQTQVLYQEIKNALQVTATDHIIDAYCGV 316 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G A + ++I ++ A+ N + N ++E + Sbjct: 317 GTIGFAFANQVASIRGMDIVPEAIADAKQNAQDLAIVNTLYETGKAEEIIPKWYQ----- 371 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTT 338 YR I VDPPR+GLDD + + Y ++Y+SCN +L RDL L+ Sbjct: 372 -------SGYRADAIIVDPPRTGLDDKLLQTIITYQPEKMVYVSCNTSTLARDLVSLTKV 424 Query: 339 HTIERLALFDQFPYTRHMECGVLLVRK 365 + +E + D FP+T E V L +K Sbjct: 425 YKVEYIQSVDMFPHTARTEAVVKLTKK 451 >gi|94988943|ref|YP_597044.1| tRNA (Uracil-5-) -methyltransferase [Streptococcus pyogenes MGAS9429] gi|94992837|ref|YP_600936.1| tRNA (Uracil-5-) -methyltransferase [Streptococcus pyogenes MGAS2096] gi|94542451|gb|ABF32500.1| tRNA (Uracil-5-) -methyltransferase [Streptococcus pyogenes MGAS9429] gi|94546345|gb|ABF36392.1| tRNA (Uracil-5-) -methyltransferase [Streptococcus pyogenes MGAS2096] Length = 451 Score = 269 bits (687), Expect = 6e-70, Method: Composition-based stats. Identities = 82/386 (21%), Positives = 144/386 (37%), Gaps = 38/386 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIF-------RSEPIHYRMRAEFHIWHD 54 ++ Y +QL K D +RQ + F+ + F +P HYR + +F + Sbjct: 81 GCQIMHLAYPKQLDFKDDVIRQALKKFKPTGYEQFEIRPTLGMKKPDHYRAKLQFQLRSF 140 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGSLL---INALMIEMMATIRLEPLLRAKLFQIDYL- 110 G + +F Q + + ID + L I + +++ +L K+ I + Sbjct: 141 GGTVKAGLFSQGSHRLVPIDNCLVQDQLTQDIINKITQLVDKYKLPIYNERKIAGIRTIM 200 Query: 111 -----TSQSDQAIVTLIYHRLLDDAWRECAIRL---RDALHARKYQIQLIGRANKTKICL 162 S Q IV L E + ++T+I Sbjct: 201 VRKAQASDQVQIIVVSSKEVRLARFIGELTKAFPQVKTVALNSNRSKSSEIYGDETEILW 260 Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGNG 221 ++ + E + G L +F Q N + E V A G + +++ YCG G Sbjct: 261 GQEAIHEEVLDYGFAL----SPRAFYQLNPQQTEVLYGEVVKALDVGSKDHIIDAYCGVG 316 Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281 + A V ++I ++E A+ N A +N +++ + Sbjct: 317 SIGFAFAGKVKSVRGMDIIPEAIEDAQKNAKAMGFDNAYYEAGKAEDIIPKWYK------ 370 Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTH 339 YR I VDPPR+GLDD + + ++Y+SCN +L RDL L+ + Sbjct: 371 ------QGYRADAIIVDPPRTGLDDKLLKTILHYQPKQMVYVSCNTSTLARDLVQLTKVY 424 Query: 340 TIERLALFDQFPYTRHMECGVLLVRK 365 + + D FP+T E V L ++ Sbjct: 425 DVHYIQSVDMFPHTARTEAVVKLQKR 450 >gi|317498564|ref|ZP_07956857.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lachnospiraceae bacterium 5_1_63FAA] gi|316894051|gb|EFV16240.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lachnospiraceae bacterium 5_1_63FAA] Length = 360 Score = 269 bits (687), Expect = 6e-70, Method: Composition-based stats. Identities = 84/356 (23%), Positives = 148/356 (41%), Gaps = 38/356 (10%) Query: 32 NLQIFRSEPIHYRMRAEFHIWHDG-DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEM 90 + EP +YR +A+F + +D +L + +T + + M + +++++ Sbjct: 19 EPILGMEEPFYYRNKAQFPVGYDKEGNLITGFYAGRTHHIIDCTHCMIQHPVNEQILLKV 78 Query: 91 MATIRLE-----------PLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLR 139 + ++ L+R + ++ + T + +V + L + L Sbjct: 79 LDYMKKNNITAYDEKTHKGLVRHIVTRVGFKTGEIMVCLVVNGSKKNLRNLEM-----LV 133 Query: 140 DALHARK--YQIQLIGRANKTKICLD----RDYVDERLTVAGRTLIYRQIENSFTQPNAG 193 D+L + I + KT L Y + + Y+ SF Q N Sbjct: 134 DSLTEVEGMTSICVNINKEKTNRILGSKIEEVYGKPYIYDYIGNVKYQIGPLSFFQVNPT 193 Query: 194 INVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIA 252 + E + + + +LYCG G SL LA+ +V VEI K +++ AR N Sbjct: 194 QTKVLYEKAMEYADLKGEEIVWDLYCGIGTISLFLAQKAKKVYGVEIVKEAIDDARLNAK 253 Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312 N +N + ++E RE E N TI VDPPR G D + + Sbjct: 254 MNGFDNAEFFVGKAEEVLP---REYEKN--------GVYADTIVVDPPRKGCDSKLLETM 302 Query: 313 --QAYPHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVRK 365 A I+Y+SC+P +L RDL +LS + +E++ DQF ++ H+E VLL R+ Sbjct: 303 VKMAPKRIVYVSCDPATLARDLKVLSEQGYEVEKVCAVDQFSHSSHVETCVLLQRR 358 >gi|293374357|ref|ZP_06620684.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Turicibacter sanguinis PC909] gi|292647020|gb|EFF65003.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Turicibacter sanguinis PC909] Length = 468 Score = 269 bits (687), Expect = 7e-70, Method: Composition-based stats. Identities = 74/391 (18%), Positives = 143/391 (36%), Gaps = 47/391 (12%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54 L Y +QL K D + Q + + + + + P +YR RA+ + +D Sbjct: 84 GCQLQHMTYPEQLRIKRDAIWQAVERYTNLDPEELDIRPTMGMDNPYNYRNRAQMPVGYD 143 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLL-----------RAK 103 D + + ++E + + IN ++ + + + R Sbjct: 144 EDGVMVGFYSMNSRELVNVTDCEVQYEEINKVVNHAVDLLDDYKVFAYAPKTKKGTARHI 203 Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKI--- 160 + + Y T + VT + A+ L K + +I Sbjct: 204 VVRRGYRTGEIQ---VTFVLANKDFKKMYSLALDLMKYCPEVKSVYVNYNSDDTHEIFGP 260 Query: 161 ----CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWV-LAATKGIQGDLLE 215 D++ +RL + +F Q N V + V AA+ +++ Sbjct: 261 DMIKVAGEDFITDRLG----KFKFNLSPRAFYQLNPEQTVKLYNQVKYAASLTGTEKVVD 316 Query: 216 LYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275 YCG G +A V V+I + ++ A+ N N+++N ++ Sbjct: 317 AYCGVGTIGQWVADQASEVRGVDITRAAIIDAKANAKLNNIDNTYYAVGKAESIVPKWAN 376 Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLS 333 E ++ + VDPPR+G+ + M++ I+Y+SCNP +L ++L Sbjct: 377 E------------GFKPDVVIVDPPRTGMGPELIEMLKRVQPKRIVYVSCNPSTLAKNLK 424 Query: 334 ILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 L+ + ++ + D FP T H+E V L R Sbjct: 425 ELTKKYRVDYIQPIDMFPQTSHVEAVVRLTR 455 >gi|295692415|ref|YP_003601025.1| RNA methyltransferase [Lactobacillus crispatus ST1] gi|295030521|emb|CBL50000.1| RNA methyltransferase [Lactobacillus crispatus ST1] Length = 449 Score = 269 bits (687), Expect = 7e-70, Method: Composition-based stats. Identities = 71/382 (18%), Positives = 154/382 (40%), Gaps = 30/382 (7%) Query: 3 GTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFR----SEPIHYRMRAEFHIWHDGDDL 58 +L +Y++QL K +++ ++ + +++ + E YR +A+ + L Sbjct: 80 ASLAHIKYDKQLEFKRNQVVNLLKKAHLDEIEVGQTLPSPEQTGYRNKAQVPVREYNGQL 139 Query: 59 YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRL------EPLLRAKLFQIDYLTS 112 F + + + + + F I+ +++ + +R + + + + + Sbjct: 140 EIGFFRRHSHDLVPLTNFFTTDPEIDRVLVAVRDVLRKYKIAPYDEVNNTGIIRYLDVRR 199 Query: 113 QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR-DYV---D 168 + +I + D + + + + + L KT + L + DY+ + Sbjct: 200 SKANGEIMVILVSRVKDFPQMTGVAAEISQIPKVSGLVLNYNPKKTNVILGKKDYLVFGN 259 Query: 169 ERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELYCGNGNFSLVL 227 +++T L +R SF Q N+ + + + A G +++ Y G G L + Sbjct: 260 DQITDQIGDLKFRISPQSFFQINSLQTPRLYDLAIKQADLGSDDVVIDAYSGIGTIGLSV 319 Query: 228 ARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDI 287 A+H V +E+ + +++ A+ N N + N K ++E + Sbjct: 320 AKHVKAVRGIEVVRDAIKDAKDNAELNGIENAKYYLGKAEEIMPRWAK------------ 367 Query: 288 HSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STTHTIERL 344 + +FVDPPR GL + ++YISCNP ++ RDL + + +R+ Sbjct: 368 KGMKTDVVFVDPPRKGLTPEFINATVKTGPKKVVYISCNPATMIRDLLLFQEQGYEFKRI 427 Query: 345 ALFDQFPYTRHMECGVLLVRKP 366 D FP T H+E +L +K Sbjct: 428 DPVDMFPQTPHVEAVTVLTKKK 449 >gi|15675488|ref|NP_269662.1| putative RNA methyltransferase [Streptococcus pyogenes M1 GAS] gi|71911132|ref|YP_282682.1| tRNA (uracil-5-)-methyltransferase [Streptococcus pyogenes MGAS5005] gi|50401662|sp|Q99YP3|Y1606_STRP1 RecName: Full=Uncharacterized RNA methyltransferase SPy_1606/M5005_Spy1319 gi|13622683|gb|AAK34383.1| putative RNA methyltransferase [Streptococcus pyogenes M1 GAS] gi|71853914|gb|AAZ51937.1| tRNA (uracil-5-)-methyltransferase [Streptococcus pyogenes MGAS5005] Length = 451 Score = 269 bits (687), Expect = 7e-70, Method: Composition-based stats. Identities = 81/386 (20%), Positives = 145/386 (37%), Gaps = 38/386 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIF-------RSEPIHYRMRAEFHIWHD 54 ++ Y +QL K D +RQ + F+ + F +P HYR + +F + Sbjct: 81 GCQIMHLAYPKQLDFKDDVIRQALKKFKPTGYEQFEIRPTLGMKKPDHYRAKLQFQLRSF 140 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGSLL---INALMIEMMATIRLEPLLRAKLFQIDYL- 110 G + +F Q + + ID + L I + +++ +L K+ I + Sbjct: 141 GGTVKAGLFSQGSHRLVPIDNCLVQDQLTQDIINKITQLVDKYKLPIYNERKIAGIRTIM 200 Query: 111 -----TSQSDQAIVTLIYHRLLDDAWRECAIRL---RDALHARKYQIQLIGRANKTKICL 162 S Q IV L + E + ++T+I Sbjct: 201 VRKAQASDQVQIIVVSSKEVRLANFIGELTKAFPQVKTVALNSNRSKSSEIYGDETEILW 260 Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGNG 221 ++ + E + G L +F Q N + E V A G + +++ YCG G Sbjct: 261 GQEAIHEEVLDYGFAL----SPRAFYQLNPQQTEVLYGEVVKALDVGSKDHIIDAYCGVG 316 Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281 + A V ++I ++E A+ N A +N +++ + Sbjct: 317 SIGFAFAGKVKSVRGMDIIPEAIEDAQKNAKAMGFDNAYYEAGKAEDIISKWYK------ 370 Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTH 339 YR + VDPPR+GLDD + + ++Y+SCN +L RDL L+ + Sbjct: 371 ------QGYRADAVIVDPPRTGLDDKLLKTILHYQPKQMVYVSCNTSTLARDLVQLTKVY 424 Query: 340 TIERLALFDQFPYTRHMECGVLLVRK 365 + + D FP+T E V L ++ Sbjct: 425 DVHYIQSVDMFPHTARTEAVVKLQKR 450 >gi|89097300|ref|ZP_01170190.1| hypothetical protein B14911_17015 [Bacillus sp. NRRL B-14911] gi|89088123|gb|EAR67234.1| hypothetical protein B14911_17015 [Bacillus sp. NRRL B-14911] Length = 460 Score = 268 bits (686), Expect = 7e-70, Method: Composition-based stats. Identities = 82/386 (21%), Positives = 153/386 (39%), Gaps = 35/386 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL-------QIFRSEPIHYRMRAEFHIWHD 54 L +Y++QL EK D + Q + + I +P +YR +A F + + Sbjct: 87 GCQLQHLRYDRQLQEKRDIVIQALERHTKLPVAGLDIRDTIGMEDPWNYRNKASFQVGQE 146 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGSLLINA-------LMIEMMATIRLEPLLRAKLFQI 107 + ++ + + I + N +M ++ ++ E + + I Sbjct: 147 DGKIIAGLYGLNSHNLINIPQCVVQHPHTNKAIGVVKKVMNKIGISVYNEKTKKGTVRTI 206 Query: 108 DYLTS-QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD- 165 T QS + + +I + + L K +Q I KT + ++ Sbjct: 207 MARTGIQSGELQIVIITSTKDLPKKEQLITEITKRLPQVKSIMQNIN-GEKTSLIFGKET 265 Query: 166 ---YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELYCGNG 221 + +E + L + +F Q N V + V AA+ + + + YCG G Sbjct: 266 RHMHGEEYIQETLGDLSFELSARTFFQLNPEQTVKLYNEVKKAASLTGKEKVADAYCGVG 325 Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281 L LA V ++I S++ A+ N A N++ + K ++ +E Sbjct: 326 TIGLWLADQAGEVRGMDIIPESIQDAKKNAARNNIKHAKYETGKAEVLLPKWMKE----- 380 Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILSTTH 339 +R I VDPPR+GLD A + + ++Y+SCNP +L +D+++L + Sbjct: 381 -------GWRPDVIVVDPPRTGLDQALLKTILKVKPKKVVYVSCNPSTLAKDIAVLDPEY 433 Query: 340 TIERLALFDQFPYTRHMECGVLLVRK 365 +E + D FP T H+E LV + Sbjct: 434 RVEYMQPVDMFPQTAHVEVVSELVLR 459 >gi|238854152|ref|ZP_04644499.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus gasseri 202-4] gi|238833228|gb|EEQ25518.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus gasseri 202-4] Length = 450 Score = 268 bits (686), Expect = 8e-70, Method: Composition-based stats. Identities = 79/382 (20%), Positives = 157/382 (41%), Gaps = 34/382 (8%) Query: 3 GTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWHDGDDL 58 +L +Y++QL K +++ ++ + N+++ E YR +A+ + L Sbjct: 80 ASLAHIKYDKQLEFKRNQVVNLLHKADLDNIKVSQTLPSPEETGYRNKAQVPVREVHGKL 139 Query: 59 YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-------LRAKLFQIDYLT 111 F + + + + + F I+ ++I++ +R + + ++ +D Sbjct: 140 DIGFFRKHSHDLVPLTNFFTTDPEIDRVLIKVRDILRKNHVPAYDEIHNKGEVRYLDVRR 199 Query: 112 SQ-SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR-DYV-- 167 S+ S + +V L+ ++ + + + L KT + L + DY+ Sbjct: 200 SKASGEIMVILVCLHKEFPQLKKVTKEISEIKG--VTSVVLNHNPKKTNVILGKKDYLLW 257 Query: 168 -DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSL 225 + ++T + ++ SF Q N+ + + + D+ ++ Y G G L Sbjct: 258 GEPQITDKIGDVSFKISPQSFFQINSLQTPRLYDLAIQKADLKPDDVVIDAYSGIGTIGL 317 Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285 +A+H V +E+ KP+V+ A N N +NN + V ++E +E Sbjct: 318 SVAKHVKAVRGMEVIKPAVDDANANAKLNGINNAEYVVGKAEEVMPRWAKE--------- 368 Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STTHTIE 342 + IFVDPPR GL + I+YISCNP ++ RDL + + Sbjct: 369 ---GLKTDVIFVDPPRKGLTPEFIDAAVETHPKKIVYISCNPATMVRDLQLFREQGYDFN 425 Query: 343 RLALFDQFPYTRHMECGVLLVR 364 + D FP T H+E +L R Sbjct: 426 EIDPVDMFPQTPHVESVTVLER 447 >gi|325841300|ref|ZP_08167401.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Turicibacter sp. HGF1] gi|325489981|gb|EGC92328.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Turicibacter sp. HGF1] Length = 468 Score = 268 bits (686), Expect = 8e-70, Method: Composition-based stats. Identities = 74/391 (18%), Positives = 143/391 (36%), Gaps = 47/391 (12%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54 L Y +QL K D + Q + + + + + P +YR RA+ + +D Sbjct: 84 GCQLQHMTYPEQLRIKRDAIWQAVERYTNLDPEELDIRPTMGMDNPYNYRNRAQMPVGYD 143 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLL-----------RAK 103 D + + ++E + + IN ++ + + + R Sbjct: 144 EDGVMVGFYSMNSRELVNVTDCEVQYEEINKVVNHAVDLLDDYKVFAYAPKTKKGTARHI 203 Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKI--- 160 + + Y T + VT + A+ L K + +I Sbjct: 204 VVRRGYRTGEIQ---VTFVLANKDFKKMYSLALDLMKYCPEVKSVYVNYNSDDTHEIFGP 260 Query: 161 ----CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWV-LAATKGIQGDLLE 215 D++ +RL + +F Q N V + V AA+ +++ Sbjct: 261 DMIKVAGEDFITDRLG----KFKFNLSPRAFYQLNPEQTVKLYNQVKYAASLTGTEKVVD 316 Query: 216 LYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275 YCG G +A V V+I + ++ A+ N N+++N ++ Sbjct: 317 AYCGVGTIGQWVADQASEVRGVDITRAAIIDAKANAKLNNIDNTYYAVGKAESIVPKWTN 376 Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLS 333 E ++ + VDPPR+G+ + M++ I+Y+SCNP +L ++L Sbjct: 377 E------------GFKPDVVIVDPPRTGMGPELIEMLKRVQPKRIVYVSCNPSTLAKNLK 424 Query: 334 ILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 L+ + ++ + D FP T H+E V L R Sbjct: 425 ELTKKYRVDYIQPIDMFPQTSHVEAVVRLTR 455 >gi|171778765|ref|ZP_02919861.1| hypothetical protein STRINF_00713 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171282722|gb|EDT48146.1| hypothetical protein STRINF_00713 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 496 Score = 268 bits (686), Expect = 8e-70, Method: Composition-based stats. Identities = 76/391 (19%), Positives = 142/391 (36%), Gaps = 38/391 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIF-------RSEPIHYRMRAEFHIWHD 54 ++ +Y++QL K D + Q + F+ + F P HYR + +F Sbjct: 81 GCQIMHLRYDKQLEFKDDLIAQSLKKFKPVGYEKFEIRHTLGMEVPYHYRAKLQFQTRFF 140 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGSLL---INALMIEMMATIRLEPLLRAKLFQIDYL- 110 ++ +F++ + + I + L I + E++ + K+ I + Sbjct: 141 KGNVKAGLFEEGSHRLVDIKDCLVQDELTQTIINRVTELLEKHHIPIYDERKIAGIRTVM 200 Query: 111 ---TSQSDQAIVTLIYHR-----LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162 S+Q + I R + A ++ + KT++ Sbjct: 201 IRKAKSSNQVQIIFITSRDIFLAPVIKALTAEFEEIKGIAVNYNHSKSSDIYGEKTEVIW 260 Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNG 221 + E + + +F Q N + +AA + D +++ YCG G Sbjct: 261 GDADISEEVL----DYRFSLSPRAFYQLNPEQTQVLYGQAVAALDVTENDHVIDAYCGVG 316 Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281 A V ++I ++ A+ N +N ++E +E Sbjct: 317 TIGFAFADKVKSVRGMDIIPEAIADAKKNAQRMGFDNTHYEAGRAEEIIPKWYKE----- 371 Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILSTTH 339 YR + VDPPR+GLDD + + Y ++Y+SCN +L RDL LS + Sbjct: 372 -------GYRADALIVDPPRTGLDDKLLDTILKYQPAKMVYVSCNTATLARDLVKLSKVY 424 Query: 340 TIERLALFDQFPYTRHMECGVLLVRKPSGWH 370 + + D FP+T E V L ++ H Sbjct: 425 DVHYIQSVDMFPHTARTEAVVKLSKRDINHH 455 >gi|268319959|ref|YP_003293615.1| 23S rRNA (uracil-5-)-methyltransferase RumA2 [Lactobacillus johnsonii FI9785] gi|262398334|emb|CAX67348.1| 23S rRNA (uracil-5-)-methyltransferase RumA2 [Lactobacillus johnsonii FI9785] Length = 449 Score = 268 bits (686), Expect = 8e-70, Method: Composition-based stats. Identities = 77/387 (19%), Positives = 151/387 (39%), Gaps = 40/387 (10%) Query: 3 GTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFR----SEPIHYRMRAEFHIWHDGDDL 58 +L +Y++QL K +++ ++ + N++ + E YR +A+ + L Sbjct: 80 ASLAHIKYDKQLEFKRNQVVNLLHKADLDNVKAGQTMPSPEETGYRNKAQVPVREVNGKL 139 Query: 59 YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLE-----------PLLRAKLFQI 107 F + + + + + F I+ +++++ +R +R + Sbjct: 140 DIGFFRKHSHDLVPLTNFFTTDPEIDRVLLKVRDILRNNHVPAYDENRNKGEVRYLEVRH 199 Query: 108 DYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR-DY 166 T + +V L + ++ + L KT + L + DY Sbjct: 200 SKATGEIMVILVCLHKDFPQLKGVTKEISEIKGV-----TSVVLNHNPKKTNVILGKKDY 254 Query: 167 V---DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGN 222 + + ++T + ++ SF Q N+ + + + D+ ++ Y G G Sbjct: 255 LLWGEPQITDKIGDVSFKISPQSFFQINSLQTPRLYDLAIQKADLKPDDVVIDAYSGIGT 314 Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282 L +A+H V +E+ KP+VE A N N + N + V ++E +E Sbjct: 315 IGLSVAKHVKAVRGMEVIKPAVEDANANAKLNGITNAEYVVGKAEEVMPRWAKE------ 368 Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STTH 339 + IFVDPPR GL + I+YISCNP ++ RDL + + Sbjct: 369 ------GLKTDVIFVDPPRKGLTPEFIDAAVETNPKKIVYISCNPATMVRDLQLFKEQGY 422 Query: 340 TIERLALFDQFPYTRHMECGVLLVRKP 366 + + D FP T H+E +L R+ Sbjct: 423 DFDEIDPVDMFPQTPHVESVTVLERQK 449 >gi|116630115|ref|YP_815287.1| tRNA (uracil-5-)-methyltransferase related enzyme [Lactobacillus gasseri ATCC 33323] gi|116095697|gb|ABJ60849.1| tRNA (uracil-5-)-methyltransferase related enzyme [Lactobacillus gasseri ATCC 33323] Length = 450 Score = 268 bits (686), Expect = 8e-70, Method: Composition-based stats. Identities = 79/382 (20%), Positives = 157/382 (41%), Gaps = 34/382 (8%) Query: 3 GTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWHDGDDL 58 +L +Y++QL K +++ ++ + N+++ E YR +A+ + L Sbjct: 80 ASLAHIKYDKQLEFKRNQVVNLLHKADLDNIKVSQTLPSPEETGYRNKAQVPVREVHGKL 139 Query: 59 YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-------LRAKLFQIDYLT 111 F + + + + + F I+ ++I++ +R + + ++ +D Sbjct: 140 DIGFFRKHSHDLVPLTNFFTTDPEIDRVLIKVRDILRKNHVPAYDEIHNKGEVRYLDVRR 199 Query: 112 SQ-SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR-DYV-- 167 S+ S + +V L+ ++ + + + L KT + L + DY+ Sbjct: 200 SKASGEIMVILVCLHKEFPQLKKVTKEISEIKG--VTSVVLNHNPKKTNVILGKKDYLLW 257 Query: 168 -DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSL 225 + ++T + ++ SF Q N+ + + + D+ ++ Y G G L Sbjct: 258 GEPQITDKIGDVSFKISPQSFFQINSLQTPRLYDLAIQKADLKPDDVVIDAYSGIGTIGL 317 Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285 +A+H V +E+ KP+V+ A N N +NN + V ++E +E Sbjct: 318 SVAKHVKAVRGMEVIKPAVDDANANAKLNGINNAEYVVGKAEEVMPRWAKE--------- 368 Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STTHTIE 342 + IFVDPPR GL + I+YISCNP ++ RDL + + Sbjct: 369 ---GLKTDVIFVDPPRKGLTPEFIDAAVETHPKKIVYISCNPATMVRDLQLFREQGYDFN 425 Query: 343 RLALFDQFPYTRHMECGVLLVR 364 + D FP T H+E +L R Sbjct: 426 EIDPVDMFPQTPHVESVTVLER 447 >gi|323489809|ref|ZP_08095034.1| putative RNA methyltransferase [Planococcus donghaensis MPA1U2] gi|323396547|gb|EGA89368.1| putative RNA methyltransferase [Planococcus donghaensis MPA1U2] Length = 454 Score = 268 bits (686), Expect = 9e-70, Method: Composition-based stats. Identities = 80/387 (20%), Positives = 149/387 (38%), Gaps = 40/387 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQV-----PNLQIFRSEPIHYRMRAEFHIWHDGD 56 L Y QQL EK D + Q + + I +P YR +++F G Sbjct: 85 GCQLQHMTYSQQLVEKRDLVVQALERYLKGTKVQVEETIGMEDPWRYRNKSQFQTRLKGS 144 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLF 105 + +F + + + + ID + ++ L + + ++ ++R + Sbjct: 145 KVIAGLFAEGSHQLLDIDECIVQHPDTTVITNAVKRILEELKMPIYDGKTMKGIIRTIVV 204 Query: 106 QIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161 + T + +VT + LL + ++ L + + + ++T Sbjct: 205 RTGVNTGEIQLVLVTTRSKIPQKELLLERLKKIDTNLVSIVQNINKEKTSLVFGDETITL 264 Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWV-LAATKGIQGDLLELYCGN 220 +D + E L L + +F Q N V + + + AA + +++ YCG Sbjct: 265 FGKDTIHEELG----ELAFDLSARAFFQLNPTQTVKLYDEIKRAAQLTGKETVVDAYCGV 320 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G L LA V +++ SV A+ N A K V +++++ + E Sbjct: 321 GTIGLWLADSAKEVRGMDVLHESVVDAKANAKAQGYT-AKYVTGTAEKWLELWSNE---- 375 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILSTT 338 + + VDPPR+GL D+ + + +Y SCNP +L +DL L+ Sbjct: 376 --------GFVPDVLTVDPPRTGLADSLLQTILKVKPKRFVYTSCNPSTLAKDLQQLTKI 427 Query: 339 HTIERLALFDQFPYTRHMECGVLLVRK 365 + IE + D FP T +E LV K Sbjct: 428 YRIEYIQPVDMFPQTAQVESVTKLVLK 454 >gi|282851234|ref|ZP_06260599.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus gasseri 224-1] gi|311110290|ref|ZP_07711687.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus gasseri MV-22] gi|282557202|gb|EFB62799.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus gasseri 224-1] gi|311065444|gb|EFQ45784.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus gasseri MV-22] Length = 448 Score = 268 bits (686), Expect = 9e-70, Method: Composition-based stats. Identities = 79/383 (20%), Positives = 158/383 (41%), Gaps = 34/383 (8%) Query: 3 GTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWHDGDDL 58 +L +Y++QL K +++ ++ + N+++ E YR +A+ + L Sbjct: 80 ASLAHIKYDKQLEFKRNQVVNLLHKADLDNIKVSQTLPSPEETGYRNKAQVPVREVHGKL 139 Query: 59 YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-------LRAKLFQIDYLT 111 F + + + + + F I+ ++I++ +R + + ++ +D Sbjct: 140 DIGFFRKHSHDLVPLTNFFTTDPEIDRVLIKVRDILRKNHVPAYDEIHNKGEVRYLDVRR 199 Query: 112 SQ-SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR-DYV-- 167 S+ S + +V L+ ++ + + + L KT + L + DY+ Sbjct: 200 SKASGEIMVILVCLHKEFPQLKKVTKEISEIKG--VTSVVLNHNPKKTNVILGKKDYLLW 257 Query: 168 -DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSL 225 + ++T + ++ SF Q N+ + + + D+ ++ Y G G L Sbjct: 258 GEPQITDKIGDVSFKISPQSFFQINSLQTPRLYDLAIQKADLKPDDVVIDAYSGIGTIGL 317 Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285 +A+H V +E+ KP+V+ A N N +NN + V ++E +E Sbjct: 318 SVAKHVKAVRGMEVIKPAVDDANANAKLNGINNAEYVVGKAEEVMPRWAKE--------- 368 Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STTHTIE 342 + IFVDPPR GL + I+YISCNP ++ RDL + + Sbjct: 369 ---GLKTDVIFVDPPRKGLTPEFIDAAVETHPKKIVYISCNPATMVRDLQLFREQGYDFN 425 Query: 343 RLALFDQFPYTRHMECGVLLVRK 365 + D FP T H+E +L +K Sbjct: 426 EIDPVDMFPQTPHVEAVTVLEKK 448 >gi|312868870|ref|ZP_07729056.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus oris PB013-T2-3] gi|311095610|gb|EFQ53868.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus oris PB013-T2-3] Length = 452 Score = 268 bits (686), Expect = 9e-70, Method: Composition-based stats. Identities = 68/383 (17%), Positives = 147/383 (38%), Gaps = 42/383 (10%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWHDGDDLYH 60 L +Y QL K ++ +++ + ++++ P HYR +A+ + L Sbjct: 88 LGHLKYPAQLRFKQHQIEELLAKAHLDDIKVAPTMGMERPYHYRNKAQVPVKLVRGKLET 147 Query: 61 IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKLFQIDY 109 + + + + I+ F I+ ++ + +R + ++R + + Y Sbjct: 148 GFYKRGSHTLVPIEDFYIQDPKIDEAIVVVRDLLRKYHVMPYDERTGKGVIRTVMARRGY 207 Query: 110 LTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD---Y 166 + + +VT + + + + + K +Q + K+ D + + Sbjct: 208 YSHEVMVVLVTNTKRLPMAE---QIVDGIVAGVPEVKSIVQNVNDKRTNKLLGDTNKTLW 264 Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELYCGNGNFSL 225 + + + + SF Q N + + + A +++ YCG G SL Sbjct: 265 GKDEIHDQLLGIDFAISPLSFYQVNPQQTERLYQTAIGNAGLDGSQTVIDAYCGIGTISL 324 Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285 +A+H +V VEI ++ N + N + V +++ + Sbjct: 325 AVAKHAKQVYGVEIVPAAIAD----AKHNGIKNAEFVVGKAED------------QFAKW 368 Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILST-THTIE 342 + + VDPPR GL ++ + ++Y+SCNP +L RD+ + + + Sbjct: 369 QAAGLKPDVVIVDPPRKGLAESLIEATGKMGPQKVIYVSCNPATLVRDIQRFAEVGYHVT 428 Query: 343 R-LALFDQFPYTRHMECGVLLVR 364 + + DQFP T H+E LL R Sbjct: 429 KPIQPVDQFPQTTHVESVTLLER 451 >gi|262066022|ref|ZP_06025634.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Fusobacterium periodonticum ATCC 33693] gi|291380272|gb|EFE87790.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Fusobacterium periodonticum ATCC 33693] Length = 451 Score = 268 bits (685), Expect = 9e-70, Method: Composition-based stats. Identities = 78/385 (20%), Positives = 160/385 (41%), Gaps = 34/385 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAF-QVPNLQI----FRSEPIHYRMRAEFHIWHDGD 56 + +YE QL K + ++M + +++I + +YR + G+ Sbjct: 80 GCDFAMLKYESQLKYKKLMVEEVMRKIAGLSDIEISNVLASEDVYNYRNKIIEPFSVYGN 139 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-------LRAKLFQIDY 109 + F +++ E +D + S L N ++ E+ + + + L + Sbjct: 140 KIITGFFKRKSHEVFEVDENILNSKLGNRIIKELKEILNKNKISVYNEITHKGLLRNVMI 199 Query: 110 LTSQSDQAI-VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR---- 164 T+ +++A+ V +I + + + RLR+ + K I + + KT + Sbjct: 200 RTNSNNEAMLVLIINSNKITENIKNLLFRLREKIEEIK-SIYISLNSKKTNTVIGEKNIF 258 Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNF 223 Y +E + + + SF Q N + + + I +++ Y G G Sbjct: 259 IYGEESIKENINGIEFHISPTSFFQINVKQAKRLYDIAINFFDNIDDKYIVDAYSGTGTI 318 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 +++A+ +V A+EI K + E + N + N++ + ++ L Sbjct: 319 GMIMAKKAKKVYAIEIVKSASEDGKRTAKENGIENIEFINGPVEK------------ELV 366 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST-THT 340 I ++ + TI DPPR GL+ + + V ++YISCNP + RD+ + S + Sbjct: 367 KIINNNQKIDTIIFDPPRKGLEASIIDTVAELNLKEVVYISCNPSTFARDVKLFSEKGYV 426 Query: 341 IERLALFDQFPYTRHMECGVLLVRK 365 +++L D FP T H+EC L+ R+ Sbjct: 427 LKKLQAVDMFPQTSHIECVGLIERR 451 >gi|58336866|ref|YP_193451.1| RNA methyltransferase [Lactobacillus acidophilus NCFM] gi|227903424|ref|ZP_04021229.1| TrmA family tRNA (uracil-5-)-methyltransferase [Lactobacillus acidophilus ATCC 4796] gi|58254183|gb|AAV42420.1| RNA methyltransferase [Lactobacillus acidophilus NCFM] gi|227868744|gb|EEJ76165.1| TrmA family tRNA (uracil-5-)-methyltransferase [Lactobacillus acidophilus ATCC 4796] Length = 450 Score = 268 bits (685), Expect = 9e-70, Method: Composition-based stats. Identities = 78/382 (20%), Positives = 157/382 (41%), Gaps = 34/382 (8%) Query: 3 GTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFR----SEPIHYRMRAEFHIWHDGDDL 58 +L +Y++QL K +++ ++ + N+++ E YR +A+ + L Sbjct: 80 ASLAHIKYDKQLEFKRNQVVNLLKKAHMDNIEVGETMASPEQTGYRNKAQVPVREVNGQL 139 Query: 59 YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATI-------RLEPLLRAKLFQIDYLT 111 F + + + + + F I+ ++I + + E + ++ +D Sbjct: 140 EIGFFRRHSHDLVPLTNFFTTDPEIDRVLIAVRDILRKNNVPAYDEINHKGEVRYLDVRR 199 Query: 112 SQ-SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR-DYV-- 167 S+ + + +V LI L D + I + + L KT + L + DY+ Sbjct: 200 SKATGEIMVILIC--LHKDFAQLPRIAAEVSQIPGVTGLILNHNPKKTNVILGKKDYLVF 257 Query: 168 -DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSL 225 ++++T L +R SF Q N+ + + + D+ ++ Y G G L Sbjct: 258 GNDQITDKIGDLKFRISPQSFFQINSLQTPRLYDLAIKKAALKPSDVVIDAYSGIGTIGL 317 Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285 +A+H V +E+ + +++ A+ N N ++N + ++E + Sbjct: 318 SVAKHVKAVRGIEVVRDAIKDAKDNAELNGIDNAEYYLGKAEEIMPRWAK---------- 367 Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STTHTIE 342 + +FVDPPR GL + I+YISCNP ++ RDL + + + Sbjct: 368 --QGLKTDVVFVDPPRKGLTPEFIDATVKTGPKKIVYISCNPATMIRDLQLFQEQGYEFD 425 Query: 343 RLALFDQFPYTRHMECGVLLVR 364 R+ D FP T H+E +L R Sbjct: 426 RIDPVDMFPQTPHVESVTVLER 447 >gi|329116332|ref|ZP_08245049.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus parauberis NCFD 2020] gi|326906737|gb|EGE53651.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus parauberis NCFD 2020] Length = 452 Score = 268 bits (685), Expect = 1e-69, Method: Composition-based stats. Identities = 74/381 (19%), Positives = 144/381 (37%), Gaps = 40/381 (10%) Query: 10 YEQQLAEKVDRLRQMMLAFQV-----PNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 Y +QL K ++ + I P YR +A+ + L F Sbjct: 88 YSEQLKFKAKQVTDNLYKTAGLTDVEVAETIGMENPFAYRNKAQIPVRRVNGKLETGFFR 147 Query: 65 QQTKERMRIDYFMPGSLLINAL-----------MIEMMATIRLEPLLRAKLFQIDYLTSQ 113 + + + + I ++ I+ L + L++ + + Sbjct: 148 KNSHDLLPISDYLIQDKEIDRLINYTRDLLIRFEVSPYDEKEKTGLIKNLVVRRGQ---N 204 Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD----YVDE 169 S + ++ + R + ++ + A +Q I N I ++ Y + Sbjct: 205 SGEMMLIFVTSRPKVFRVDQIIAKITEEFPAIVSVMQNINDQNGNAI-FGKEFRTLYGKD 263 Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLA 228 +T + Y SF Q N + + + + + + D +++ Y G G L A Sbjct: 264 TITDSMLGNTYEISAQSFYQVNTEMAEKLYQTAIDFSNLTKDDIVIDAYSGIGTIGLSFA 323 Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288 + +V VE+ + +V AR N N + NV+ V ++ + +E Sbjct: 324 KSVKKVYGVEVIEQAVLDARKNAELNGIKNVQFVTDIAEAAMEKWSKE------------ 371 Query: 289 SYRFKTIFVDPPRSGLDDATVGM-VQAYP-HILYISCNPDSLCRDLSILST-THTIERLA 345 I VDPPR GL ++ + V+ P I Y+SCNP ++ RD+ + + ++++ Sbjct: 372 GIHPNVILVDPPRKGLTESFIRASVEMNPEKITYVSCNPATMARDIKLYQELGYDLKKVQ 431 Query: 346 LFDQFPYTRHMECGVLLVRKP 366 D FP T H+EC LL ++ Sbjct: 432 PVDLFPQTHHVECVSLLEKRN 452 >gi|288555150|ref|YP_003427085.1| RNA methyltransferase [Bacillus pseudofirmus OF4] gi|288546310|gb|ADC50193.1| RNA methyltransferase [Bacillus pseudofirmus OF4] Length = 471 Score = 268 bits (685), Expect = 1e-69, Method: Composition-based stats. Identities = 72/389 (18%), Positives = 150/389 (38%), Gaps = 42/389 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54 L +Y+ L K D +RQ N++ I +P +YR +++ + Sbjct: 98 GCQLQHMEYQATLVSKQDIIRQAFERHTKLNMEKQVIQPTIGMEDPWYYRNKSQLQVAKK 157 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGSLLIN-----------ALMIEMMATIRLEPLLRAK 103 G + ++ + + + + M N L + + + L+R Sbjct: 158 GGRVIAGLYAMNSHKVIDLSACMVQHKATNKVTRVMKQILSDLNVSIYDERKHTGLIRTI 217 Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD 163 + ++ + T +VT + E ++ L +Q I NKT + Sbjct: 218 VTRVGFETGHVQVVLVTNEKEIPRQNVLIE---EIKKRLPEVNSLMQNIN-GNKTSLIFG 273 Query: 164 RDYV----DERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYC 218 + V +E + + + +F Q N V + E AA +++ YC Sbjct: 274 EETVHLDGEEVIEEKLGDISFELSARAFFQLNPIQTVKLYNEAKRAAKLTGTEKVVDAYC 333 Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278 G G L LA + V +++ + S+ AR N + ++ +++E+ +E Sbjct: 334 GVGTIGLWLADGAEEVRGMDVIEASIIDARVNADKHGYDHFTYEVGTAEEWLPKWVKE-- 391 Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSIL- 335 ++ + VDPPR+G D+ + + ++Y+SCNP +L +D+ L Sbjct: 392 ----------GWKPDVVIVDPPRTGCDETLLRTITGVKPKRVVYVSCNPSTLAKDVEYLR 441 Query: 336 STTHTIERLALFDQFPYTRHMECGVLLVR 364 + + ++ + D FP+T +E +L + Sbjct: 442 TKGYKVDNIQPVDMFPWTAQVESVTVLSK 470 >gi|77413832|ref|ZP_00790011.1| RNA methyltransferase, TrmA family [Streptococcus agalactiae 515] gi|77160132|gb|EAO71264.1| RNA methyltransferase, TrmA family [Streptococcus agalactiae 515] Length = 453 Score = 268 bits (685), Expect = 1e-69, Method: Composition-based stats. Identities = 79/381 (20%), Positives = 143/381 (37%), Gaps = 40/381 (10%) Query: 10 YEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 YEQQL K ++ + + + + P+ YR +A+ + L F Sbjct: 88 YEQQLLFKQKQVADNLYKIAHISDVLVEPTLGMTIPLAYRNKAQVPVRRVDGQLETGFFR 147 Query: 65 QQTKERMRIDYFMPGSLLINAL-----------MIEMMATIRLEPLLRAKLFQIDYLTSQ 113 + + + I+ ++ I+AL ++ + L+R + + + T Q Sbjct: 148 KNSHTLVSIEDYLIQEKEIDALINFTRDLLRKFDVKPYDEEQQSGLIRNLVVRRGHYTGQ 207 Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD----YVDE 169 +VT L D E +L A + +Q I + + ++ Y + Sbjct: 208 LMLVLVTTRPKIFLIDQMIE---KLVSAFPSVVSIMQNIND-RNSNVIFGKEFRTLYGSD 263 Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLA 228 + Y SF Q N + + + + + D +++ Y G G L +A Sbjct: 264 TIEDQMLGNTYAISAQSFYQVNTEMAEKLYQKAIDFSDLNSEDIVIDAYSGIGTIGLSVA 323 Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288 + V VE+ + +V A+ N N + N V S++ +E Sbjct: 324 KQVKHVYGVEVVEKAVSDAKENATRNGITNSTYVADSAENAMAKWLKE------------ 371 Query: 289 SYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILST-THTIERLA 345 + I VDPPR GL ++ V I YISCN ++ RD+ + + + ++ Sbjct: 372 GIKPTVIMVDPPRKGLTESFVYSAAQTKADKITYISCNSATMARDIKLFEELGYHLVKIQ 431 Query: 346 LFDQFPYTRHMECGVLLVRKP 366 D FP T H+EC LL R Sbjct: 432 PVDLFPMTHHVECVALLQRSK 452 >gi|302388260|ref|YP_003824082.1| RNA methyltransferase, TrmA family [Clostridium saccharolyticum WM1] gi|302198888|gb|ADL06459.1| RNA methyltransferase, TrmA family [Clostridium saccharolyticum WM1] Length = 454 Score = 268 bits (685), Expect = 1e-69, Method: Composition-based stats. Identities = 82/389 (21%), Positives = 139/389 (35%), Gaps = 43/389 (11%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56 L Y +QL K ++ + + EP YR +A+F D D Sbjct: 82 GCQLQAMDYGEQLRYKERKIYNNITRIGGFSEVPMQPIMGMDEPWRYRNKAQFPWGLDKD 141 Query: 57 DLYH-IMFDQQTKERMRIDYFMPGSLLINALMIEM-----------MATIRLEPLLRAKL 104 + +T + + + G ++ ++ + L+R L Sbjct: 142 GNIVTGFYAGRTHSIISCEDCLLGIEENQEVLRQIKAHMERYHLIPYEEASHKGLIRHTL 201 Query: 105 FQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR 164 + + T + V E + + I +T + L Sbjct: 202 IRKGFRTGEIMVCQVINGNSLPHSKELVERLLEIPGM-----TSISFNINKERTNVILGD 256 Query: 165 D----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG--DLLELYC 218 Y +T + YR SF Q N + LA G+ G + +LYC Sbjct: 257 KVENLYGPGYITDFIGAVKYRISPLSFYQVNPVQTEKLYGTALA-YAGLTGVETVWDLYC 315 Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278 G G SL LA+ +V VEI ++E AR N N ++NV+ ++E + Sbjct: 316 GIGTISLFLAQKAKKVYGVEIVPQAIEDARENARLNGLDNVEFFVGKAEEVLPEQYEK-- 373 Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILS 336 H I VDPPR G D+A + + ++Y+SC+ +L RD+ L+ Sbjct: 374 ---------HQVYADVIVVDPPRKGCDEACLNTIVKMGPKRVVYVSCDSATLARDMKYLA 424 Query: 337 T-THTIERLALFDQFPYTRHMECGVLLVR 364 + +E++ D FP H E L+V+ Sbjct: 425 ENGYKVEKVRGCDMFPQALHTEVCCLIVK 453 >gi|237738953|ref|ZP_04569434.1| tRNA (Uracil-5-)-methyltransferase [Fusobacterium sp. 2_1_31] gi|229423553|gb|EEO38600.1| tRNA (Uracil-5-)-methyltransferase [Fusobacterium sp. 2_1_31] Length = 453 Score = 268 bits (685), Expect = 1e-69, Method: Composition-based stats. Identities = 78/384 (20%), Positives = 160/384 (41%), Gaps = 34/384 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAF-QVPNLQI----FRSEPIHYRMRAEFHIWHDGD 56 + +YE QL K + ++M +P+++I + +YR + G+ Sbjct: 80 GCDFAMLKYESQLKYKKLMVEEVMRKIAGLPDIEISDVLASEDVYNYRNKIIEPFSVYGN 139 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-------LRAKLFQIDY 109 + F +++ E +D + S L N ++ E+ + + + L + Sbjct: 140 KIITGFFKRKSHEVFEVDENILNSKLGNRIIKELKEILNKNKISVYNEITHKGLLRNVMI 199 Query: 110 LTSQSDQAI-VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR---- 164 T+ +++A+ V +I + + + RLR+ + K I + + KT + Sbjct: 200 RTNSNNEAMLVLIINSNKITENIKNLLFRLREKIEEIK-SIYISLNSKKTNTVIGEKNIF 258 Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNF 223 Y +E + + + SF Q N + + + I +++ Y G G Sbjct: 259 IYGEESIKENLNGIEFHISPTSFFQINVKQAKRLYDIAINFFDNIDDKYIVDAYSGTGTI 318 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 +++A+ +V A+EI K + E N + N++ + + ++ L Sbjct: 319 GMIMAKKAKKVYAIEIVKSASEDGERTAKENGIENIEFINGAVEK------------ELV 366 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST-THT 340 ++ + R TI DPPR GL+ + + V ++YISCNP + RD+ + S + Sbjct: 367 NLINANKRIDTIIFDPPRKGLEASIIDKVAELNLKEVVYISCNPSTFARDVKLFSEKGYV 426 Query: 341 IERLALFDQFPYTRHMECGVLLVR 364 +++L D FP T H+EC L+ + Sbjct: 427 LKKLQAVDMFPQTSHIECVGLIEK 450 >gi|313896553|ref|ZP_07830102.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Selenomonas sp. oral taxon 137 str. F0430] gi|312974738|gb|EFR40204.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Selenomonas sp. oral taxon 137 str. F0430] Length = 457 Score = 268 bits (685), Expect = 1e-69, Method: Composition-based stats. Identities = 76/388 (19%), Positives = 130/388 (33%), Gaps = 45/388 (11%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56 L YE QL K ++ M + + P +YR + +F + Sbjct: 85 GCQLQHLSYEAQLTAKRLQVVDAMTHIGKLPHVPVKETLGAASPWNYRNKMQFPVGIHQG 144 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALM-------IEMMATIRLEPLLRAKLFQIDY 109 + F Q + + + NAL ++ + E R L I Sbjct: 145 QIVVGCFAQGSHRIIDTEDCHIQREGNNALANAVRDIVTKLRIPVYNEDTHRGILRHIVG 204 Query: 110 LTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQL-------IGRANKTKICL 162 Q D+ + ++ +E +R+ L Q + T + Sbjct: 205 RVGQGDELMAVIVTAAKELPRKKELIRMMRERLPQLVSIQQNIQTYRNNVVMGRDTVLLW 264 Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNG 221 + + + L L + SF Q N + E L A +++ YCG G Sbjct: 265 GKPTIRDTLG----KLSFHISPRSFFQVNTAQAAVLYEQALQYADLHGTETVIDAYCGTG 320 Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE----- 276 +L LA+ V +EI +P++ AR N N + N + + + ++ R+ Sbjct: 321 TITLFLAQRAWNVYGIEIVRPAILDARKNACDNGIKNAEFIVGDTTAVMPSLYRQGVRPD 380 Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILS 336 KT PR I+Y+SCNP +L RDL+I+ Sbjct: 381 VVVVDPPRAGCTPTVLKTFANMKPR---------------RIVYVSCNPATLARDLAIMK 425 Query: 337 T-THTIERLALFDQFPYTRHMECGVLLV 363 T + + D FP T H+EC + Sbjct: 426 TLGYEAREIQPVDLFPQTSHVECVAWMT 453 >gi|322372299|ref|ZP_08046835.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus sp. C150] gi|321277341|gb|EFX54410.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus sp. C150] Length = 452 Score = 268 bits (684), Expect = 1e-69, Method: Composition-based stats. Identities = 81/388 (20%), Positives = 152/388 (39%), Gaps = 41/388 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54 L+ +Y++QL K D L Q + F+ + + I EP HYR + +F Sbjct: 81 GCQLMHLRYDKQLEFKTDLLGQALKKFKPEHFESYDIRPTIGMKEPRHYRAKLQFQTRSF 140 Query: 55 GDDLY-HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----------LRAK 103 G +F + + + I+ + L A++ +++ + L +R Sbjct: 141 GGGSVKAGLFAEGSHRLININNCVVQDKLTQAIVNQVVVLLDKYKLPIYDERKISGIRTV 200 Query: 104 LFQIDYLTSQSDQAIVT---LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKI 160 + + ++Q VT + + +L+ + + A++ Y +T+I Sbjct: 201 MIRRALGSNQVQLIFVTSKSVSFAKLVKELTAIYPEIVTIAIN-YNYSKSSEIYGQETEI 259 Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELYCG 219 +D + E + + +F Q N + + A +L++ YCG Sbjct: 260 IWGQDTISEEVL----DYSFELSPRAFYQLNPQQTEVLYGQAVKALDVDKNDNLIDAYCG 315 Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279 G L A + ++I +++ AR N A + N +++ +E Sbjct: 316 VGTIGLAFANKVKDIRGMDIIPEAIDDARKNAEALGLENYHYEVGKAEDIIPRWYKE--- 372 Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILST 337 YR + VDPPR+GLDD + + Y ++Y+SCN +L RDL L+ Sbjct: 373 ---------GYRADALIVDPPRTGLDDKLLQTILEYVPEKMVYVSCNVSTLSRDLVSLTQ 423 Query: 338 THTIERLALFDQFPYTRHMECGVLLVRK 365 + + + D FP+T E V L RK Sbjct: 424 AYEVNYIQSVDMFPHTARTEAVVKLTRK 451 >gi|270292705|ref|ZP_06198916.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus sp. M143] gi|270278684|gb|EFA24530.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus sp. M143] Length = 455 Score = 268 bits (684), Expect = 1e-69, Method: Composition-based stats. Identities = 70/384 (18%), Positives = 153/384 (39%), Gaps = 40/384 (10%) Query: 10 YEQQLAEKVDRLRQMMLAF-QVPNLQI----FRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 Y +QL K +++ + + ++++ P+ YR +A+ + L F Sbjct: 88 YPEQLKFKTKQVKNSLYKIAGITDVEVAETLGMENPVKYRNKAQVPVRRVNGVLETGFFR 147 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIR-----------LEPLLRAKLFQIDYLTSQ 113 + + + M ++ F +I+ +++ + +R L+R + + + + Q Sbjct: 148 KNSHDLMPLEDFFIQDPVIDQVVVALRNLLRRYDLKPYDEKEQSGLIRNLVVRRGHFSGQ 207 Query: 114 SDQAIVTLIYH----RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDE 169 +VT L + + + + Q + K +DY+ + Sbjct: 208 IMVILVTTRPKVFRIEQLIEQLIKQFPEIVSVMQNINDQNTNAIFGKEWKTLYGQDYITD 267 Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLA 228 ++ ++ +F Q N + + + + + + D+ ++ Y G G L +A Sbjct: 268 QMLGND----FQIAGPAFYQVNTQMAEKLYQTAIDFAELREDDVVIDAYSGIGTIGLSVA 323 Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288 +H V VE+ +VE ++ N A N++ N V +++ + +E Sbjct: 324 KHVKEVYGVEVIPEAVENSKKNAALNNITNAHYVCDTAENAMKNWLKE------------ 371 Query: 289 SYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST-THTIERLA 345 + I VDPPR GL ++ + I YISCN ++ RD+ + + ++++ Sbjct: 372 GIQPTVILVDPPRKGLTESFIKASSQTGADRIAYISCNVATMARDIKLYQELGYELKKVQ 431 Query: 346 LFDQFPYTRHMECGVLLVRKPSGW 369 D FP T H+E VL+ + G Sbjct: 432 PVDLFPQTHHVEAVVLMSKANPGK 455 >gi|239625145|ref|ZP_04668176.1| RNA methyltransferase [Clostridiales bacterium 1_7_47_FAA] gi|239519375|gb|EEQ59241.1| RNA methyltransferase [Clostridiales bacterium 1_7_47FAA] Length = 554 Score = 268 bits (684), Expect = 1e-69, Method: Composition-based stats. Identities = 79/388 (20%), Positives = 146/388 (37%), Gaps = 43/388 (11%) Query: 2 SGTLLID-QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDG-DDLY 59 G ++D +Y +QL K + + I +P HYR + D ++ Sbjct: 186 GGCQMLDMEYTEQLKRKQKVVEDLFRGVCPVKPIIGMKDPFHYRNKVHAVFDRDKRGNII 245 Query: 60 HIMFDQQTKERMRIDYFMPGSLLINAL-----------MIEMMATIRLEPLLRAKLFQID 108 ++ + + + + ++ M + + I LLR L + Sbjct: 246 SGIYQENSHDVIPVETCMIEDKKADEIIGTIRGMLKSFKIRTYDEDTGYGLLRHVLIRRA 305 Query: 109 YLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGR-------ANKTKIC 161 + T ++ +V L+ + + LR+ IQ I NK + Sbjct: 306 FST---NEIMVVLVTASPVFPSKNNFVKALREKHPEITTIIQNINGRGTSMVLGNKENVL 362 Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220 + Y+ + L +R SF Q N + L A Q +++ YCG Sbjct: 363 YGKGYIVDELC----GCKFRISSKSFYQINPVQTEVLYGKALELAGLKGQEVVIDAYCGI 418 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G ++ +R +V+ VE+ + +V+ A N N ++N++ + F M Sbjct: 419 GTIGIIASRQAGQVIGVELNQDAVKDAVNNAKMNDIDNIRFYCNDAGRFMVNMAE----- 473 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST- 337 + + +DPPRSG + + + ++Y+SCNP++L RD+ + Sbjct: 474 -------RGDKADVVIMDPPRSGSTEEFMDSIAKLGAGKVVYVSCNPETLVRDVRYMKKL 526 Query: 338 THTIERLALFDQFPYTRHMECGVLLVRK 365 + E + D FP TRH E V L RK Sbjct: 527 GYAAEGVWPVDMFPATRHTEIIVELCRK 554 >gi|251783009|ref|YP_002997312.1| putative RNA methyltransferase [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242391639|dbj|BAH82098.1| putative RNA methyltransferase [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|323127818|gb|ADX25115.1| RNA methyltransferase, TrmA family protein [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 452 Score = 268 bits (684), Expect = 1e-69, Method: Composition-based stats. Identities = 86/387 (22%), Positives = 155/387 (40%), Gaps = 40/387 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIF-------RSEPIHYRMRAEFHIWHD 54 ++ Y +QL K D +RQ + F+ + F +P HYR + +F + Sbjct: 81 GCQIMHLAYPKQLDFKDDVIRQALKKFKPAGYEQFEIRHTKGMKKPDHYRAKLQFQLRSF 140 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGSLLINALM---IEMMATIRLEPLLRAKLFQIDYL- 110 G + +F Q + + IDY + L ++ +++ RL + I + Sbjct: 141 GGSVKAGLFSQGSHRLVPIDYCLVQDALTQEIINSITQLVDKYRLPVYNERNIAGIRTVM 200 Query: 111 ---TSQSDQAIVTLIYHR------LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161 SDQ + ++ + L+ D + AL+ + + I +T+I Sbjct: 201 VRKAQASDQVQIIIVSSKEISLAGLIGDVTKAFPQIKMVALNINRSKSSDI-YGEETEIL 259 Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGN 220 ++ + E + G L +F Q N + E V A G+ +++ YCG Sbjct: 260 WGQEAIHEEVLDYGFAL----SPRAFYQLNPQQTEVLYGEVVKALDVGVTDHIIDAYCGV 315 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G+ A V ++I ++E A+ N A +N +++ + Sbjct: 316 GSIGFAFAGKVKSVRGMDIIPEAIEDAQKNAKAMGFDNAYYEAGKAEDIIPKWYK----- 370 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTT 338 YR I VDPPR+GLD+ + + Y ++Y+SCN +L RDL L+T Sbjct: 371 -------QGYRADAIIVDPPRTGLDEKLLKTILRYQPKQMVYVSCNTSTLARDLIQLATV 423 Query: 339 HTIERLALFDQFPYTRHMECGVLLVRK 365 + + + D FP+T E V L +K Sbjct: 424 YDVHYIQSVDMFPHTARTEAVVKLQKK 450 >gi|322412380|gb|EFY03288.1| RNA methyltransferase, TrmA family protein [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 452 Score = 268 bits (684), Expect = 1e-69, Method: Composition-based stats. Identities = 83/386 (21%), Positives = 150/386 (38%), Gaps = 38/386 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIF-------RSEPIHYRMRAEFHIWHD 54 ++ Y +QL K D +RQ + F+ + F +P HYR + +F + Sbjct: 81 GCQIMHLAYPKQLDFKDDVIRQALKKFKPAGYEQFDIRHTKGMKKPNHYRAKLQFQLRLF 140 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGSLL---INALMIEMMATIRLEPLLRAKLFQIDYL- 110 G + +F Q + + ID+ + L I + +++ RL + I + Sbjct: 141 GGSVKAGLFSQGSHRLVPIDHCLVQDALTQEIINTITQLVDKYRLPVYNERNIAGIRTVM 200 Query: 111 ---TSQSDQAIVTLIYHRLLDDAWRECAI-----RLRDALHARKYQIQLIGRANKTKICL 162 SDQ + ++ + + A + +++ +T+I Sbjct: 201 VRKAQASDQVQIVIVSSKEISLAGLIGDVTKAFPQIKTVALNINRSKSSDIYGEETEILW 260 Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGNG 221 ++ + E + G L +F Q N + E V A G +++ YCG G Sbjct: 261 GQEAIYEEVLDYGFAL----SPRAFYQLNPEQTEVLYGEVVEALDVGTTDHIIDAYCGVG 316 Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281 + L A V ++I ++E A+ N +N +++ + Sbjct: 317 SIGLAFAGKVKSVRGMDIIPEAIEDAQKNAKVMGFDNTYYEAGKAEDIIPKWYK------ 370 Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTTH 339 YR I VDPPR+GLDD + + Y ++Y+SCN +L RDL L+T + Sbjct: 371 ------QGYRADAIIVDPPRTGLDDKLLKTILRYQPKQMVYVSCNTSTLARDLVQLATVY 424 Query: 340 TIERLALFDQFPYTRHMECGVLLVRK 365 + + D FP+T E V L +K Sbjct: 425 DVHYIQSVDMFPHTARTEAVVKLQKK 450 >gi|94994824|ref|YP_602922.1| tRNA (uracil-5-) -methyltransferase [Streptococcus pyogenes MGAS10750] gi|94548332|gb|ABF38378.1| tRNA (Uracil-5-) -methyltransferase [Streptococcus pyogenes MGAS10750] Length = 451 Score = 268 bits (684), Expect = 1e-69, Method: Composition-based stats. Identities = 82/386 (21%), Positives = 144/386 (37%), Gaps = 38/386 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIF-------RSEPIHYRMRAEFHIWHD 54 ++ Y +QL K D +RQ + F+ + F +P HYR + +F + Sbjct: 81 GCQIMHLAYPKQLDFKDDVIRQALKKFKPTGYEQFEIRPTLGMKKPDHYRAKLQFQLRSF 140 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGSLL---INALMIEMMATIRLEPLLRAKLFQIDYL- 110 G + +F Q + + ID + L I + +++ +L K+ I + Sbjct: 141 GGTVKAGLFSQGSHRLVPIDNCLVQDQLTQDIINKITQLVDKYKLPIYNERKIAGIRTIM 200 Query: 111 -----TSQSDQAIVTLIYHRLLDDAWRECAIRL---RDALHARKYQIQLIGRANKTKICL 162 S Q IV L E + ++T+I Sbjct: 201 VRKAQASDQVQIIVVSSKEVRLARFIGELTKAFPQVKTVALNSNRSKSSEIYGDETEILW 260 Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGNG 221 ++ + E + G L +F Q N + E V A G + +++ YCG G Sbjct: 261 GQEAIHEEVLDYGFAL----SPRAFYQLNPQQTEVLYGEVVKALDVGSKDHIIDAYCGVG 316 Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281 + A V ++I ++E A+ N A +N +++ + Sbjct: 317 SIGFTFAGKVKSVRGMDIIPEAIEDAQKNAKAMGFDNAYYEAGKAEDIIPKWYK------ 370 Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTH 339 YR I VDPPR+GLDD + + ++Y+SCN +L RDL L+ + Sbjct: 371 ------QGYRADAIIVDPPRTGLDDKLLKTILHYQPKQMVYVSCNTSTLARDLVQLTKIY 424 Query: 340 TIERLALFDQFPYTRHMECGVLLVRK 365 + + D FP+T E V L ++ Sbjct: 425 DVHYIQSVDMFPHTARTEAVVKLQKR 450 >gi|323485341|ref|ZP_08090690.1| hypothetical protein HMPREF9474_02441 [Clostridium symbiosum WAL-14163] gi|323401377|gb|EGA93726.1| hypothetical protein HMPREF9474_02441 [Clostridium symbiosum WAL-14163] Length = 490 Score = 268 bits (684), Expect = 1e-69, Method: Composition-based stats. Identities = 84/419 (20%), Positives = 155/419 (36%), Gaps = 75/419 (17%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-------------------------------- 29 L + YE+QL K ++ + Sbjct: 81 GCQLQMMSYEEQLKFKQRKVYNNLKRIGGLDNLYLPGEGPGAGEKDGEGDRAGDREGGES 140 Query: 30 -----VPNLQIFRSEPIHYRMRAEFHIWHDGDD-LYHIMFDQQTKERMRIDYFMPG---S 80 + I +P YR +A+F + ++ + + +T + D + G + Sbjct: 141 GRKPVIMEPIIGMEDPWRYRNKAQFPFGMNKENEVIAGFYAGRTHCIIENDDCLLGIQEN 200 Query: 81 LLINALMIEMMATIRLEP--------LLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWR 132 I A + ++M ++P L+R L + + T + V + + Sbjct: 201 REILAAVKQIMTQYGIKPYQEESHTGLIRHVLIRKGFRTGELMVCFVVNGRKLPYSEGFV 260 Query: 133 ECAIRLRDALHARKYQIQLIGRANKTKICLDRD----YVDERLTVAGRTLIYRQIENSFT 188 E + + + + Y + + KT + L R+ Y +T + YR SF Sbjct: 261 ERLLEIPG-MTSISYNVNM----EKTNVILGREVVNLYGPGYITDYIGNVKYRISPLSFY 315 Query: 189 QPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246 Q N + L G+ G+ + +LYCG G SL L++ +V VEI ++E Sbjct: 316 QVNPVQTERLYGTALE-YAGLTGEETVWDLYCGIGTISLFLSQKAKKVYGVEIVPQAIED 374 Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306 AR N N + NV+ ++E E + I VDPPR G D Sbjct: 375 ARENARLNGIENVEFFVGKAEEVLPKQYEEDK-----------VYADVIVVDPPRKGCDP 423 Query: 307 ATVGMVQAY--PHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLL 362 + + ++Y+SC+ +L RD+ L + +ER++ D FP + H+E +++ Sbjct: 424 VCLDTIVMMGPKKVVYVSCDSATLARDVKYLEERGYWVERVSCVDMFPMSGHVESVIMM 482 >gi|299144530|ref|ZP_07037609.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298517618|gb|EFI41358.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 520 Score = 268 bits (684), Expect = 1e-69, Method: Composition-based stats. Identities = 87/379 (22%), Positives = 155/379 (40%), Gaps = 34/379 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ----VPNLQIFRSEPIHYRMRAEFHIWHDGDD 57 L YE+QL K +++ ML I P +YR + + DG Sbjct: 73 GCDFLEYDYEKQLEWKKEKVNNDMLRIGNIECKVENTIGMQYPYYYRNNIQLKV-VDGKI 131 Query: 58 LYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQA 117 Y F + +K+ + I + + IN IE++ + + + + + + L + Sbjct: 132 GY---FSKNSKDLISIKHCLIAGKEINRA-IEILKNWKGLNSVDSIIIRQNKL----GEL 183 Query: 118 IVTLIYHRLLDDAWRECAIRLRDALHAR---KYQIQLIGRANKTKICLDRDYVDERLTVA 174 + L+ + + + L + K + + K DY+ + L Sbjct: 184 FIVLVTKSEIKKVNQLLSELLELKICGIFENKNTLNKFRFGREFKKLYGEDYLTDELC-- 241 Query: 175 GRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFSLVLARHFDR 233 ++ SF Q N + + + + + D++ +LYCG G SL AR+ + Sbjct: 242 --GFKFKLSPVSFFQVNTTQTEKLYQEAIDYLEINKQDIIFDLYCGIGTISLFAARNAKK 299 Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293 V+ VEI + ++E AR N N V+NV+ + S+E + + +D Sbjct: 300 VIGVEIVENAIEDARKNAEFNSVDNVRFICGKSEEILEKL-----------LDEEKIIPN 348 Query: 294 TIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFP 351 I +DPPR+GLD+ + + I YISCN + RDL +L + IE++ D F Sbjct: 349 KIILDPPRAGLDEKLIKKLLEIMPEKISYISCNSSTQARDLKLLKEKYKIEKIQPVDMFC 408 Query: 352 YTRHMECGVLLVRKPSGWH 370 + H+E V L + S H Sbjct: 409 NSVHVETVVYLSKLKSDEH 427 >gi|313114891|ref|ZP_07800389.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Faecalibacterium cf. prausnitzii KLE1255] gi|310622768|gb|EFQ06225.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Faecalibacterium cf. prausnitzii KLE1255] Length = 461 Score = 268 bits (684), Expect = 2e-69, Method: Composition-based stats. Identities = 76/391 (19%), Positives = 146/391 (37%), Gaps = 42/391 (10%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAE--FHIWHDGDDLYHIM 62 +L Y QL +K + +++++ + P HYR + F G L + Sbjct: 1 MLGMDYAAQLKQKEETVKKLLGKYGPVEHIRGMETPYHYRNKVISTFTTGW-GGKLTSGI 59 Query: 63 FDQQTKERMRIDYFMPGSLLINALMIEMMATI-----------RLEPLLRAKLFQIDYLT 111 + + + + ++ + +++ M+ + A + LLR L + +T Sbjct: 60 YAANSHKVLPVESCLLQDEVLDKTMLAVRAAAGTCHYQPFNEDKGTGLLRHCLLRRGVMT 119 Query: 112 SQSDQAIVTL--------IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD 163 Q +VT + + L + + + + + + + K+ Sbjct: 120 GQVMVVLVTAQPVLPGAKNFVKALLTEAGKQGVAITTIVQNVNDRKTSVVLGDMEKVLYG 179 Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGN 222 + ++ + L Y SF Q N + + A ++ L+ YCG G Sbjct: 180 KGFILDTLCGK----TYAISPRSFYQINHTQTEVLYGLAVDAAHLTGKEVVLDAYCGIGT 235 Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282 L A H +V+ VE+ + +V A N N V N + + ++ Sbjct: 236 IGLTAADHAKQVVGVEVNREAVHDAIGNAKHNGVKNARFFAADATQWIGEAA-------- 287 Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILS-TTH 339 R IF+DPPR G + V A ++Y+SCNP +L RDL +L+ + Sbjct: 288 ----AAGERADVIFMDPPREGSTPQFIDSVARMAPKRVVYVSCNPATLARDLELLTRKGY 343 Query: 340 TIERLALFDQFPYTRHMECGVLLVRKPSGWH 370 +E D FP++ H+E L + + H Sbjct: 344 KVESSTPVDMFPHSEHIETVCALSKLNAKQH 374 >gi|167039861|ref|YP_001662846.1| RNA methyltransferase [Thermoanaerobacter sp. X514] gi|300915379|ref|ZP_07132693.1| RNA methyltransferase, TrmA family [Thermoanaerobacter sp. X561] gi|307724814|ref|YP_003904565.1| TrmA family RNA methyltransferase [Thermoanaerobacter sp. X513] gi|166854101|gb|ABY92510.1| RNA methyltransferase, TrmA family [Thermoanaerobacter sp. X514] gi|300888655|gb|EFK83803.1| RNA methyltransferase, TrmA family [Thermoanaerobacter sp. X561] gi|307581875|gb|ADN55274.1| RNA methyltransferase, TrmA family [Thermoanaerobacter sp. X513] Length = 452 Score = 267 bits (683), Expect = 2e-69, Method: Composition-based stats. Identities = 84/391 (21%), Positives = 162/391 (41%), Gaps = 47/391 (12%) Query: 2 SGTLLID-QYEQQLAEKVDRLRQMMLAFQVPNLQ---IFRSEPIH-YRMRAEFHIWHDGD 56 G + + Y QL K D +++++ + + + I +S H YR + E+ D + Sbjct: 78 GGCIYQNVDYSDQLKIKEDIVKKLLEKEGIRDYEFLRIVKSPKEHGYRNKMEYTFGKDKE 137 Query: 57 DLYHIMFDQQT---------KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQ- 106 + ++ K + D F+ L I+ + + L Sbjct: 138 GNEVLGLHRKGRFYEVVMTDKCNIVDDDFLKALNLTFDYAIKKGLPFYDKKTHKGFLRHL 197 Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWRECAI---------RLRDALHARKYQIQLIGRANK 157 + S++ + ++ ++ L+ ++E RL LH + K Sbjct: 198 VVRKASKAGEILLNIVTTTQLEHDFKELIEIYKNVDFESRLVGVLHTQNDSWSDAVVCEK 257 Query: 158 TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLEL 216 + +DY+ E L L ++ SF Q N+ + E V + + +L Sbjct: 258 LNVLYGKDYLIEELL----GLKFKISAFSFFQTNSYGAEKLYETVREFAGDVSDKIVFDL 313 Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276 Y G G +++A +V+ +E+ + +V +AR N N + N + + Sbjct: 314 YSGTGTIGIIMAPMAKKVIGIELVEEAVMSARENAELNGLKNCTFIAGDVSK-------- 365 Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCRDLSI 334 +LK+I + VDPPRSG++ + +++ P ++Y+SCNP+SL RDL I Sbjct: 366 ----KLKEI---KEMPDVVIVDPPRSGINPKALEDIIKFNPQKVVYVSCNPESLARDLKI 418 Query: 335 LST-THTIERLALFDQFPYTRHMECGVLLVR 364 S + ++++ D FP+T H+EC VL+ R Sbjct: 419 FSEGGYKVDKVKCVDMFPHTYHVECVVLMSR 449 >gi|319946766|ref|ZP_08021000.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus australis ATCC 700641] gi|319746814|gb|EFV99073.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus australis ATCC 700641] Length = 452 Score = 267 bits (683), Expect = 2e-69, Method: Composition-based stats. Identities = 73/380 (19%), Positives = 152/380 (40%), Gaps = 40/380 (10%) Query: 10 YEQQLAEKVDRLRQMMLAFQV-----PNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 Y +QL K +++ + L + P+ YR +A+ + + F Sbjct: 88 YTEQLKFKAKQVKDSLYKMAGISDMEVPLTLGMDHPVQYRNKAQVPVRRVNGQVETGFFR 147 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIR-----------LEPLLRAKLFQIDYLTSQ 113 + + + M I+ F +I+ +++ + IR L+R + + + + + Sbjct: 148 KNSHDLMPIEDFYIQDPVIDQVVLALRDLIRRFDLKPYDEKEQSGLIRNLVVRRGHHSGE 207 Query: 114 SDQAIVTLIYHRLLDDAWRECAIR----LRDALHARKYQIQLIGRANKTKICLDRDYVDE 169 +VT D E I+ ++ + Q + + +DY+ + Sbjct: 208 IMVILVTTRPKIFRVDQLIEQLIKQFPVIKSVMQNINDQNTNAIFGKEWRTLYGQDYITD 267 Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLA 228 ++ ++ +F Q N + + + + + D+ ++ Y G G L +A Sbjct: 268 QMLGND----FQISGPAFYQVNTEMAEKLYQTAIDFADLKEEDVVIDAYSGIGTIGLSVA 323 Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288 +H V VE+ +VE ++ N A N++ N V +++ + +E Sbjct: 324 KHVKEVYGVEVIPEAVENSQKNAALNNITNAHYVCDTAENAMKNWLKE------------ 371 Query: 289 SYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST-THTIERLA 345 + I VDPPR GL ++ + I YISCN ++ RD+ + + ++++ Sbjct: 372 GIQPTAILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMARDIKLYQELGYELKKVQ 431 Query: 346 LFDQFPYTRHMECGVLLVRK 365 D FP T H+EC LLV++ Sbjct: 432 PVDLFPQTHHVECVSLLVKR 451 >gi|282934859|ref|ZP_06340092.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus jensenii 208-1] gi|281301090|gb|EFA93401.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus jensenii 208-1] Length = 481 Score = 267 bits (683), Expect = 2e-69, Method: Composition-based stats. Identities = 83/382 (21%), Positives = 161/382 (42%), Gaps = 33/382 (8%) Query: 3 GTLLIDQYEQQLAEKVDRLRQMMLAF---QVPNLQIFRSEPIHYRMRAEFHIWHDGDDLY 59 +L +YE+QL K ++ ++ + N + E + YR +A+ + + L Sbjct: 114 ASLAHIKYEKQLEFKRQQVINLLEKAHLNKKVNETVASPEEVGYRNKAQVPVRNVKGKLE 173 Query: 60 HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-------LRAKLFQIDYLTS 112 F + + + + ++ F I+ +++ +R + + ++ ++ S Sbjct: 174 IGFFRKHSHDLVPMENFFTTDPEIDRVLVATRDILRKNHVPAYDEVKNKGEVRYLEVRRS 233 Query: 113 QSD-QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR-DYV--- 167 +++ +V L+ + A + + + L KT + L + DY+ Sbjct: 234 KANSDMMVILVCLHKDFPQLVKVADEISQI--SGVVSVILNHNPKKTNVILGKHDYLLAG 291 Query: 168 DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLV 226 + ++ + ++ SF Q N+ + + + D +++ Y G G L Sbjct: 292 NPQIEDKIGDIRFKISAQSFFQINSLQTPRLYNLAIEKAGLSKKDTVIDAYSGIGTIGLS 351 Query: 227 LARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDID 286 +A+H +V VEI KP+V+ AR N N + N + V ++E E Sbjct: 352 VAKHVKQVYGVEIVKPAVQDARENALLNGIENAEYVCGKAEELMPNWVNE---------- 401 Query: 287 IHSYRFKTIFVDPPRSGLDDATVGM-VQAYP-HILYISCNPDSLCRDLSILST-THTIER 343 + IFVDPPR GL + V+ P I+YISCNP ++ RDL++ + E Sbjct: 402 --GMKADVIFVDPPRKGLTPEFIEASVKTNPQKIVYISCNPATMVRDLTMYQELGYDFEE 459 Query: 344 LALFDQFPYTRHMECGVLLVRK 365 + D FP T H+EC +L +K Sbjct: 460 ITPVDMFPQTPHVECVTVLEKK 481 >gi|296876678|ref|ZP_06900726.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus parasanguinis ATCC 15912] gi|296432180|gb|EFH17979.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus parasanguinis ATCC 15912] Length = 452 Score = 267 bits (683), Expect = 2e-69, Method: Composition-based stats. Identities = 70/381 (18%), Positives = 151/381 (39%), Gaps = 40/381 (10%) Query: 10 YEQQLAEKVDRLRQMMLAFQV-----PNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 Y +QL K + + + L + P+ YR +A+ + + F Sbjct: 88 YPEQLKFKAKQAKDSLYKMAGITDMEVPLTLGMDHPVQYRNKAQVPVRRVNGQVVTGFFR 147 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIR-----------LEPLLRAKLFQIDYLTSQ 113 + + + M I+ F +I+ +++ + IR L+R + + + + + Sbjct: 148 KNSHDLMPIEDFYIQDPVIDQVVLALRDLIRRFDLKPYDEKEQSGLIRNLVVRRGHHSGE 207 Query: 114 SDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDE 169 +VT + L + + ++ + Q + + +DY+ + Sbjct: 208 IMVILVTTRPKVFRVDQLIEQLIKQFPAIKSVMQNINDQNTNAIFGKEWRTLYGQDYITD 267 Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLA 228 ++ ++ +F Q N + + + + + + D+ ++ Y G G L +A Sbjct: 268 QMLGNA----FQISGPAFYQVNTEMAEKLYQTAIDFAELKEEDVVIDAYSGIGTIGLSVA 323 Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288 +H V VE+ +VE ++ N + N + N V +++ + +E Sbjct: 324 KHVKEVYGVEVIPEAVENSQKNASLNGITNAHYVCDTAENAMKNWLKE------------ 371 Query: 289 SYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST-THTIERLA 345 + I VDPPR GL ++ + I YISCN ++ RD+ + + ++++ Sbjct: 372 GIQPTAILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMARDIKLYQELGYELKKVQ 431 Query: 346 LFDQFPYTRHMECGVLLVRKP 366 D FP T H+EC LLV++ Sbjct: 432 PVDLFPQTHHVECVSLLVKRN 452 >gi|315037788|ref|YP_004031356.1| RNA methyltransferase [Lactobacillus amylovorus GRL 1112] gi|325956263|ref|YP_004286873.1| RNA methyltransferase [Lactobacillus acidophilus 30SC] gi|312275921|gb|ADQ58561.1| RNA methyltransferase [Lactobacillus amylovorus GRL 1112] gi|325332828|gb|ADZ06736.1| RNA methyltransferase [Lactobacillus acidophilus 30SC] Length = 448 Score = 267 bits (683), Expect = 2e-69, Method: Composition-based stats. Identities = 74/386 (19%), Positives = 154/386 (39%), Gaps = 40/386 (10%) Query: 3 GTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFR----SEPIHYRMRAEFHIWHDGDDL 58 +L +Y++QL K +++ ++ + ++++ + E YR +A+ + L Sbjct: 80 ASLAHIKYDKQLEFKRNQVVNLLKKAHLDDIEVGQTLPSPEQTGYRNKAQVPVREINGQL 139 Query: 59 YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMA-----------TIRLEPLLRAKLFQI 107 F + + + + + F I+ +++ + I + +R + Sbjct: 140 EIGFFRRHSHDLVPLTNFFTTDPEIDRVLVAVRDILRKYRVPAYDEINHKGEVRYLDVRR 199 Query: 108 DYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR-DY 166 T + +V L +D R + + + L KT + L + DY Sbjct: 200 SKATGEIMVILVCLH-----NDFPRLLGVAAEVSQIPGVTGLILNHNPKKTNVILGKKDY 254 Query: 167 V---DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGN 222 + ++++T L +R SF Q N+ + + + D+ ++ Y G G Sbjct: 255 LVLGNDQITDQIGDLKFRISPQSFFQINSLQTPRLYDLAIKKADLKPSDVVIDAYSGIGT 314 Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282 L +A+H V +E+ + +++ A+ N N ++N K ++E + Sbjct: 315 IGLSVAKHVKAVRGIEVVRDAIKDAKDNAKLNDIDNAKYYLGKAEEIMPRWAK------- 367 Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSIL-STTH 339 + +FVDPPR GL + ++YISCNP ++ RDL + + Sbjct: 368 -----QGLKTDVVFVDPPRKGLTPEFIDATAKTGPEKVVYISCNPATMVRDLQLFQEQGY 422 Query: 340 TIERLALFDQFPYTRHMECGVLLVRK 365 +R+ D FP T H+E +L +K Sbjct: 423 EFDRIDPVDMFPQTPHVEAVTVLTKK 448 >gi|330718855|ref|ZP_08313455.1| tRNA (uracil-5-)-methyltransferase related enzyme [Leuconostoc fallax KCTC 3537] Length = 465 Score = 267 bits (682), Expect = 2e-69, Method: Composition-based stats. Identities = 78/383 (20%), Positives = 147/383 (38%), Gaps = 39/383 (10%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQ---VPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHI 61 L+ +Y QL K ++++Q+ I P YR +A+ + L Sbjct: 97 LVNLKYSAQLLFKQNQVQQLFKKMNIDVTVAPTIGMENPTAYRNKAQVPVQEINGQLETG 156 Query: 62 MFDQQTKERMRIDYFMPGSLLINA-----------LMIEMMATIRLEPLLRAKLFQIDYL 110 + + + + + ++F I+ L I + +R + + Y Sbjct: 157 FYRRGSHKLVPTNHFYIQDPKIDEAVSIVRDVLRELKISAYDEDTKKGTIRHIMVRRGYY 216 Query: 111 TSQSDQAIVTLIYHRLLDDA----WRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY 166 + + I+T L D RE L+ +H ++ + ++ D+ Sbjct: 217 SHELMVVIITHTAKLLGSDIIIKKLREQLPELKSLIHNVNNKMTNVIMGEDNRVMWGEDH 276 Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFSL 225 + ++L L + NSF Q N + + + D++ + Y G G +L Sbjct: 277 IHDQLL----DLDFVIGPNSFYQVNPQTTSVLYQLAADKAQLKPQDVVVDAYSGIGTITL 332 Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285 +A +V VEI + +V A+ N N ++NV + + E E Sbjct: 333 SIANRVKKVYGVEIVQQAVVDAQLNAKNNQISNVSFIAKDAPEQMAQWAAE--------- 383 Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLS-ILSTTHTIE 342 + +FVDPPR GL + + + +YISCNP +L RD + I++ + I+ Sbjct: 384 ---GLKPDVVFVDPPRKGLTEDLIEAISNMDTKTFVYISCNPATLARDAAQIIAAGYHID 440 Query: 343 -RLALFDQFPYTRHMECGVLLVR 364 + DQFP T H+E + + Sbjct: 441 GDIQPLDQFPQTTHVETVAVFRK 463 >gi|290580745|ref|YP_003485137.1| putative RNA methyltransferase [Streptococcus mutans NN2025] gi|254997644|dbj|BAH88245.1| putative RNA methyltransferase [Streptococcus mutans NN2025] Length = 454 Score = 267 bits (682), Expect = 2e-69, Method: Composition-based stats. Identities = 80/379 (21%), Positives = 144/379 (37%), Gaps = 40/379 (10%) Query: 10 YEQQLAEKVDRLRQMMLAF-QVPNLQI----FRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 Y QQL K ++ + + ++ + P YR +A+ + L F Sbjct: 88 YGQQLNFKRKQVINSLSKIAGISDIDVADTLGMDNPTAYRNKAQVPVRRVNGQLETGFFR 147 Query: 65 QQTKERMRIDYFMPGSLLINAL---MIEMMATIRLEP--------LLRAKLFQIDYLTSQ 113 + + M I+ + I+ L +++ L+P L+R + + + T Q Sbjct: 148 KNSHALMPIEDYYIQDKEIDRLINFTRDLLRRFDLKPYDEKEQTGLIRNLVVRRGHYTGQ 207 Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD----YVDE 169 +VT + E ++ A K IQ I T + Y ++ Sbjct: 208 IMLVLVTTRSKIFRIEQMIE---KIVSEFPAVKSIIQNIND-RNTNAIFGSEFRTLYGED 263 Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLA 228 + Y SF Q N + + + + + D +++ Y G G L A Sbjct: 264 TIEDTMLGNRYIISAQSFYQVNTVMAEKLYQTAIDFSDLTPDDTVIDAYSGIGTIGLSFA 323 Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288 + V VE+ + +V A N A N++ NV V S+++ + + Sbjct: 324 KKVKDVYGVEVIEAAVRDAEKNAALNNITNVHYVADSAEKAMASWSK------------R 371 Query: 289 SYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILST-THTIERLA 345 + I VDPPR GL ++ + A I YISC P ++ RD+ + + + ++ Sbjct: 372 GIKPDVILVDPPRKGLTESFIEASTAMQPRKITYISCAPATMARDVKLYEELGYKLVKVQ 431 Query: 346 LFDQFPYTRHMECGVLLVR 364 D FP T H+EC LL + Sbjct: 432 PVDLFPQTHHVECVSLLEK 450 >gi|306826963|ref|ZP_07460262.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus pyogenes ATCC 10782] gi|304430825|gb|EFM33835.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus pyogenes ATCC 10782] Length = 451 Score = 267 bits (682), Expect = 2e-69, Method: Composition-based stats. Identities = 81/386 (20%), Positives = 144/386 (37%), Gaps = 38/386 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIF-------RSEPIHYRMRAEFHIWHD 54 ++ Y +QL K D +RQ + F+ + F +P HYR + +F + Sbjct: 81 GCQIMHLAYPKQLDFKDDVIRQALKKFKPTGYEQFEIRPTLGMKKPDHYRAKLQFQLRSF 140 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGSLL---INALMIEMMATIRLEPLLRAKLFQIDYL- 110 G + +F Q + + ID + L I + +++ +L K+ I + Sbjct: 141 GGTVKAGLFSQGSHRLVPIDNCLVQDQLTQDIINKITQLVDKYKLPIYNERKIAGIRTIM 200 Query: 111 -----TSQSDQAIVTLIYHRLLDDAWRECAIRL---RDALHARKYQIQLIGRANKTKICL 162 S Q IV L E + ++T+I Sbjct: 201 VRKAQASDQVQIIVVSSKEVRLARFIGELTKAFPQVKTVALNSNRSKSSEIYGDETEILW 260 Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGNG 221 ++ + E + G L +F Q N + E V A G + +++ YCG G Sbjct: 261 GQEAIHEEVLDYGFAL----SPRAFYQLNPQQTEVLYGEVVKALDVGSKDHIIDAYCGVG 316 Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281 + A V ++I ++E A+ N + +N +++ + Sbjct: 317 SIGFAFAGKVKSVRGMDIIPEAIEDAQKNAKSMGFDNAYYEAGKAEDIIPKWYK------ 370 Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTH 339 YR I VDPPR+GLDD + + ++Y+SCN +L RDL L+ + Sbjct: 371 ------QGYRADAIIVDPPRTGLDDKLLKTILHYQPKQMVYVSCNTSTLARDLVQLTKIY 424 Query: 340 TIERLALFDQFPYTRHMECGVLLVRK 365 + + D FP+T E V L ++ Sbjct: 425 DVHYIQSVDMFPHTARTEAVVKLQKR 450 >gi|227889470|ref|ZP_04007275.1| TrmA family tRNA (uracil-5-)-methyltransferase [Lactobacillus johnsonii ATCC 33200] gi|227849948|gb|EEJ60034.1| TrmA family tRNA (uracil-5-)-methyltransferase [Lactobacillus johnsonii ATCC 33200] Length = 450 Score = 267 bits (682), Expect = 2e-69, Method: Composition-based stats. Identities = 78/381 (20%), Positives = 156/381 (40%), Gaps = 34/381 (8%) Query: 3 GTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFR----SEPIHYRMRAEFHIWHDGDDL 58 +L +Y++QL K +++ ++ + N+++ + E YR +A+ + L Sbjct: 80 ASLAHIKYDKQLEFKRNQVVNLLHKADLDNVKVGQTMPSPEETGYRNKAQVPVREVNGKL 139 Query: 59 YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-------LRAKLFQIDYLT 111 F + + + + + F I+ ++I++ +R + + + ++ Sbjct: 140 DIGFFRKHSHDLVPLTSFFTTDPEIDRVLIKVRDILRKNHVPAYDEIHNKGEARYLEVRR 199 Query: 112 SQ-SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR-DYV-- 167 S+ + + +V L+ +E + + + L KT + L + DY+ Sbjct: 200 SKATGEIMVILVCLHKDFPQLKEVTKEISEIKG--VTSVVLNHNPKKTNVILGKKDYLLW 257 Query: 168 -DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSL 225 + ++T + ++ SF Q N+ + + + D+ ++ Y G G L Sbjct: 258 GEPQITDKIGNVSFKISPQSFFQINSLQTPRLYDLAIQKADLKPDDVVIDAYSGIGTIGL 317 Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285 +A+H V +E+ KP+VE A N N + N + V ++E +E Sbjct: 318 SVAKHVKAVRGMEVIKPAVEDANANAKLNGITNAEYVVGKAEEVMPRWAKE--------- 368 Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STTHTIE 342 R IFVDPPR GL + I+YISCNP ++ RDL + + + Sbjct: 369 ---GLRTDVIFVDPPRKGLTLEFIDAAVETNPKKIVYISCNPATMVRDLQLFKEQGYDFD 425 Query: 343 RLALFDQFPYTRHMECGVLLV 363 + D FP T H+E +L Sbjct: 426 EIDPVDMFPQTPHVESVTVLE 446 >gi|306825259|ref|ZP_07458601.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304432695|gb|EFM35669.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 451 Score = 267 bits (682), Expect = 2e-69, Method: Composition-based stats. Identities = 71/379 (18%), Positives = 154/379 (40%), Gaps = 40/379 (10%) Query: 10 YEQQLAEKVDRLRQMMLAF-QVPNLQI----FRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 Y +QL K +++ + + ++++ P+ YR +A+ + L F Sbjct: 88 YPEQLKFKTKQVKDSLYKIAGIIDVEVAETLGMEHPVKYRNKAQVPVRRVNGVLETGFFR 147 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIR-----------LEPLLRAKLFQIDYLTSQ 113 + + + M ++ F +I+ +++ + +R L+R + + + + Q Sbjct: 148 KNSHDLMPLEDFFIQDPVIDQVIVALRDLLRRYDLKPYDEKEQSGLIRNLVVRRGHYSGQ 207 Query: 114 SDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDE 169 +VT + L + + + + Q + K +DY+ + Sbjct: 208 IMVILVTTRPKVFRVEQLIEQIIKQFPEIVSVMQNINDQNTNAIFGKEWKTLYGQDYITD 267 Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLA 228 ++ ++ +F Q N + + + + + + D+ ++ Y G G L +A Sbjct: 268 QMLGND----FQIAGPAFYQVNTEMAEKLYQTAIDFAELKEDDVVIDAYSGIGTIGLSVA 323 Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288 +H V VE+ +VE ++ N A N++ N V +++ + +E Sbjct: 324 KHVKEVYGVEVIPEAVENSQKNAALNNITNAHYVCDTAENAMKNWLKE------------ 371 Query: 289 SYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST-THTIERLA 345 + I VDPPR GL ++ + I YISCN ++ RD+ + + ++++ Sbjct: 372 GIQPTVILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMARDIKLYQELGYELKKVQ 431 Query: 346 LFDQFPYTRHMECGVLLVR 364 D FP T H+EC LLV+ Sbjct: 432 PVDLFPQTHHVECVALLVK 450 >gi|327183079|gb|AEA31526.1| RNA methyltransferase [Lactobacillus amylovorus GRL 1118] Length = 448 Score = 267 bits (682), Expect = 2e-69, Method: Composition-based stats. Identities = 73/386 (18%), Positives = 154/386 (39%), Gaps = 40/386 (10%) Query: 3 GTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFR----SEPIHYRMRAEFHIWHDGDDL 58 +L +Y++QL K +++ ++ + ++++ + E YR +A+ + L Sbjct: 80 ASLAHIKYDKQLEFKRNQVVNLLKKAHLDDIEVGQTLPSPEQTGYRNKAQVPVREINGQL 139 Query: 59 YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMA-----------TIRLEPLLRAKLFQI 107 F + + + + + F I+ +++ + I + +R + Sbjct: 140 EIGFFRRHSHDLVPLTNFFTTDPEIDRVLVAVRDILRKYRVPAYDEINHKGEVRYLDVRR 199 Query: 108 DYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR-DY 166 T + +V L +D + + + + L KT + L + DY Sbjct: 200 SKATGEIMVILVCLH-----NDFPQLLGVAAEVSQIPGVTGLILNHNPKKTNVILGKKDY 254 Query: 167 V---DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGN 222 + ++++T L +R SF Q N+ + + + D+ ++ Y G G Sbjct: 255 LVLGNDQITDQIGDLKFRISPQSFFQINSLQTPRLYDLAIKKADLKPSDVVIDAYSGIGT 314 Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282 L +A+H V +E+ + +++ A+ N N ++N K ++E + Sbjct: 315 IGLSVAKHVKAVRGIEVVRDAIKDAKDNAKLNDIDNAKYYLGKAEEIMPRWAK------- 367 Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSIL-STTH 339 + +FVDPPR GL + ++YISCNP ++ RDL + + Sbjct: 368 -----QGLKTDVVFVDPPRKGLTPEFIDATAKTGPEKVVYISCNPATMVRDLQLFQEQGY 422 Query: 340 TIERLALFDQFPYTRHMECGVLLVRK 365 +R+ D FP T H+E +L +K Sbjct: 423 EFDRIDPVDMFPQTPHVEAVTVLTKK 448 >gi|149181245|ref|ZP_01859743.1| YfjO [Bacillus sp. SG-1] gi|148850970|gb|EDL65122.1| YfjO [Bacillus sp. SG-1] Length = 467 Score = 267 bits (682), Expect = 2e-69, Method: Composition-based stats. Identities = 78/390 (20%), Positives = 147/390 (37%), Gaps = 41/390 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54 L YEQQL EK D L Q + +L+ I EP YR +++F + Sbjct: 94 GCQLQHLSYEQQLVEKRDILMQALERHTKFDLEKLDVKPMIGMVEPWFYRNKSQFQLGFR 153 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGS-----------LLINALMIEMMATIRLEPLLRAK 103 + ++ + + + I + +++ + + + +++ Sbjct: 154 DGKIISGLYSLNSHKLVDIPECIVQHPSTNKVTNTVKKILSDFKVPIYNERTKKGIVKTV 213 Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD 163 + ++ T + +VT+ D + L K Q I T + Sbjct: 214 VTRVGVTTGEVQVVLVTVGKELPRKD---MILSEITKRLPEVKSVAQNINP-KATSLIFG 269 Query: 164 RD----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYC 218 + Y E + Y +F Q N +H+ V A + L++ YC Sbjct: 270 NETIHLYGTESIVERLDKFSYELSARAFFQLNPTQTIHLYNEVRDAAALTGHEKLVDAYC 329 Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278 G G + L+ + +++ K +E AR N ++N +++E+ + E Sbjct: 330 GVGTIGMWLSNGAKEIRGMDVVKEGIENARKNSKKFGMDNATYEVGTAEEWLPKWKAE-- 387 Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILS 336 +R + VDPPR+G + + + + +Y+SCNP +L +DL LS Sbjct: 388 ----------GWRPDVVVVDPPRTGCEPSFLNTILKVKPKKFIYVSCNPSTLAKDLKTLS 437 Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVRKP 366 ++ +E + D FP T H+E LV K Sbjct: 438 KSYDVEYIQPVDMFPQTAHVESVAKLVLKK 467 >gi|256852247|ref|ZP_05557633.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus jensenii 27-2-CHN] gi|260661721|ref|ZP_05862632.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus jensenii 115-3-CHN] gi|256615293|gb|EEU20484.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus jensenii 27-2-CHN] gi|260547468|gb|EEX23447.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus jensenii 115-3-CHN] Length = 447 Score = 266 bits (681), Expect = 3e-69, Method: Composition-based stats. Identities = 83/382 (21%), Positives = 161/382 (42%), Gaps = 33/382 (8%) Query: 3 GTLLIDQYEQQLAEKVDRLRQMMLAF---QVPNLQIFRSEPIHYRMRAEFHIWHDGDDLY 59 +L +YE+QL K ++ ++ + N + E + YR +A+ + + L Sbjct: 80 ASLAHIKYEKQLEFKRQQVINLLEKAHLNKKVNETVASPEEVGYRNKAQVPVRNVKGKLE 139 Query: 60 HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-------LRAKLFQIDYLTS 112 F + + + + ++ F I+ +++ +R + + ++ ++ S Sbjct: 140 IGFFRKHSHDLVPMENFFTTDPEIDRVLVATRDILRKNHVPAYDEVKNKGEVRYLEVRRS 199 Query: 113 QSD-QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR-DYV--- 167 +++ +V L+ + A + + + L KT + L + DY+ Sbjct: 200 KANSDMMVILVCLHKDFPQLVKVADEISQI--SGVVSVILNHNPKKTNVILGKHDYLLAG 257 Query: 168 DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLV 226 + ++ + ++ SF Q N+ + + + D +++ Y G G L Sbjct: 258 NPQIEDKIGDIRFKISAQSFFQINSLQTPRLYNLAIEKAGLSKKDTVIDAYSGIGTIGLS 317 Query: 227 LARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDID 286 +A+H +V VEI KP+V+ AR N N + N + V ++E E Sbjct: 318 VAKHVKQVYGVEIVKPAVQDARENALLNGIENAEYVCGKAEELMPNWVNE---------- 367 Query: 287 IHSYRFKTIFVDPPRSGLDDATVGM-VQAYP-HILYISCNPDSLCRDLSILST-THTIER 343 + IFVDPPR GL + V+ P I+YISCNP ++ RDL++ + E Sbjct: 368 --GMKADVIFVDPPRKGLTPEFIEASVKTNPQKIVYISCNPATMVRDLTMYQELGYDFEE 425 Query: 344 LALFDQFPYTRHMECGVLLVRK 365 + D FP T H+EC +L +K Sbjct: 426 ITPVDMFPQTPHVECVTVLEKK 447 >gi|169334084|ref|ZP_02861277.1| hypothetical protein ANASTE_00477 [Anaerofustis stercorihominis DSM 17244] gi|169258801|gb|EDS72767.1| hypothetical protein ANASTE_00477 [Anaerofustis stercorihominis DSM 17244] Length = 450 Score = 266 bits (681), Expect = 3e-69, Method: Composition-based stats. Identities = 80/391 (20%), Positives = 147/391 (37%), Gaps = 47/391 (12%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLA--FQVPNLQIFRSEP--IHYRMRAEFHIW---HD 54 + YE+QL K + ++ + + S P YR + EF D Sbjct: 79 GCSFQNITYEKQLEFKEEYIKGLFDKAGIEYKEFLPILSSPKDTEYRNKMEFSFGDMEKD 138 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGSLLINAL-----------MIEMMATIRLEPLLRAK 103 G + + + D ++ I+ E LR Sbjct: 139 GPLCLGMHEKGKHHNIVSTDNCHIVDGDYRSILSKTLEYFTHKKIKHYNKFSKEGTLRHL 198 Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLR------DALHARKYQIQLIGRANK 157 + + T Q +VT ++ + +++ + L LH A++ Sbjct: 199 VIRKAMYTGQILVNLVTTSQEKINIEEYKDLLLELNLDGEIVGILHTINDSFSDAVIADE 258 Query: 158 TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LEL 216 KI RDY+ E+ L ++ SF Q N + + V + D+ L+L Sbjct: 259 VKIIYGRDYIMEK----CLGLDFKISAFSFFQTNTLGSEVLYSVVKDFIGEEKSDVILDL 314 Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276 YCG G + +L+ + V +EI + ++EAA+ N N+++N + + Sbjct: 315 YCGTGTITQILSDKANEVYGIEIVEEAIEAAKINAELNNIDNCRFICGDV---------- 364 Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSI 334 L+++D + I +DPPR+G+ + + +Y+SC SL RDL Sbjct: 365 -----LEEVDKIDVKSDLIILDPPRAGIHPKAIDKIISFKPKKFVYVSCKATSLIRDLPF 419 Query: 335 L-STTHTIERLALFDQFPYTRHMECGVLLVR 364 + ++++ D FP T H+E VLL + Sbjct: 420 FIEAGYEVDKVRAVDMFPQTGHVETVVLLTK 450 >gi|225858819|ref|YP_002740329.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae 70585] gi|225721367|gb|ACO17221.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae 70585] Length = 453 Score = 266 bits (681), Expect = 3e-69, Method: Composition-based stats. Identities = 70/386 (18%), Positives = 155/386 (40%), Gaps = 40/386 (10%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAF-QVPNLQI----FRSEPIHYRMRAEFHIWHDGDDLY 59 L Y +QL K +++ + + ++++ P+ YR +A+ + L Sbjct: 83 LGHLSYPEQLKFKTKQVKDSLYKIAGIADVEVAETLGMEHPVKYRNKAQVPVRRVNGVLE 142 Query: 60 HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIR-----------LEPLLRAKLFQID 108 F + + M ++ F +I+ +++ + +R L+R + + Sbjct: 143 TGFFRKNSHNLMPLEDFFIQDPVIDQVVVALRDLLRRFDLKPYDEKEQSGLIRNLVVRRG 202 Query: 109 YLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR 164 + + Q +VT + L + + + + Q + + + Sbjct: 203 HYSGQIMVVLVTTRPKVFRVDQLIEQVIKQFPEIVSVMQNINDQNTNAIFGKEWRTLYGQ 262 Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNF 223 DY+ +++ ++ +F Q N + + + + + + D+ ++ Y G G Sbjct: 263 DYITDQMLGND----FQIAGPAFYQVNTEMAEKLYQTAIDFAELKKDDVVIDAYSGIGTI 318 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 L +A+H V VE+ +VE ++ N N+++N V +++ + ++ Sbjct: 319 GLSVAKHVKEVYGVELIPEAVENSKKNAQLNNISNAHYVCDTAENAMKNWLKD------- 371 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST-THT 340 + I VDPPR GL ++ + I YISCN ++ RD+ + + Sbjct: 372 -----GIQPTVILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMARDIKLYQELGYE 426 Query: 341 IERLALFDQFPYTRHMECGVLLVRKP 366 ++++ D FP T H+EC VLL R+ Sbjct: 427 LKKVQPVDLFPQTHHVECVVLLQRRN 452 >gi|161507077|ref|YP_001577031.1| RNA methyltransferase [Lactobacillus helveticus DPC 4571] gi|260102784|ref|ZP_05753021.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus helveticus DSM 20075] gi|160348066|gb|ABX26740.1| RNA methyltransferase [Lactobacillus helveticus DPC 4571] gi|260083388|gb|EEW67508.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus helveticus DSM 20075] Length = 450 Score = 266 bits (681), Expect = 3e-69, Method: Composition-based stats. Identities = 77/385 (20%), Positives = 149/385 (38%), Gaps = 40/385 (10%) Query: 3 GTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFR----SEPIHYRMRAEFHIWHDGDDL 58 +L +Y++QL K +++ ++ + N+++ E + YR +A+ + L Sbjct: 80 ASLAHIKYDKQLDFKRNQVVNLLKKAHLENIEVGETLASPEEVGYRNKAQVPVREVNGQL 139 Query: 59 YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMA-----------TIRLEPLLRAKLFQI 107 F + + + M + +F I+ +++ + I +R + Sbjct: 140 EIGFFRRHSHDLMPLTHFFTTDPEIDRVLVAVRDILRKYKVPAYDEINNNGEVRYLEVRR 199 Query: 108 DYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD-RDY 166 T + +V L D + + + + L KT + L +DY Sbjct: 200 SKSTGEMMVILVCLH-----KDFMQLPNVAAEVSQIPGVSGLILNHNPKKTNVILGPKDY 254 Query: 167 V---DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGN 222 + ++++T L +R SF Q N+ + + D+ ++ Y G G Sbjct: 255 LVFGNDQITDQIGDLKFRISPQSFFQINSLQTPRLYNLAIKQADLKPDDVVIDAYSGIGT 314 Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282 L +A+H V +E+ + +++ A+ N N + N K ++E + Sbjct: 315 IGLSVAKHVKAVRGIEVVRDAIKDAKDNAKLNDITNAKYYLGKAEEIMPRWAK------- 367 Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILSTT-H 339 + +FVDPPR GL + I+YISCNP +L RDL + + Sbjct: 368 -----SGLKTDVVFVDPPRKGLTPEFINAAVKTGPKKIVYISCNPATLVRDLQLFQEKSY 422 Query: 340 TIERLALFDQFPYTRHMECGVLLVR 364 R+ D FP T H+E +L R Sbjct: 423 EFNRIDPVDMFPQTPHVESVTVLER 447 >gi|184154533|ref|YP_001842873.1| putative RNA methyltransferase [Lactobacillus fermentum IFO 3956] gi|183225877|dbj|BAG26393.1| putative RNA methyltransferase [Lactobacillus fermentum IFO 3956] Length = 535 Score = 266 bits (681), Expect = 3e-69, Method: Composition-based stats. Identities = 81/382 (21%), Positives = 139/382 (36%), Gaps = 47/382 (12%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNL-------QIFRSEPIHYRMRAEFHIWHDGDDLYHIM 62 Y++QLA K + + + F+ + P YR +A+F + + + Sbjct: 169 YDKQLAFKKQVVLEALAKFKPLGYRHYWVKDTLAAPHPYGYRNKAQFQVRMQDGHVVAGL 228 Query: 63 FDQQTKERMRIDYFMPG-----------SLLINALMIEMMATIRLEPLLRAKLFQIDYLT 111 + + + + LI L I + +++ + T Sbjct: 229 YQTNSHTVVDMQTCAVQMPGTMKIINTLVKLIEELAIPVYNEANQSGIIKTLAVRESLAT 288 Query: 112 SQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIG-------RANKTKICLDR 164 Q AI+T + A + + D L +Q + ++T + + Sbjct: 289 GQIQVAIITNTAKLIKKHA---LLVAIEDQLPEVTSVVQNVNPGDTPLVWGDETTLLYGQ 345 Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNF 223 DY+ E L L +R SF Q N + E A + D L++ Y G G Sbjct: 346 DYITESLM----GLDFRLSARSFLQLNPEQTEVLYEEAAKALDLSKDDTLIDAYAGIGTI 401 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 L LA +V+ +E +V+ A N N V N + ++E R Sbjct: 402 GLSLANRVKQVIGMETIADAVQDANNNATLNGVTNARYEVGPAEELLPKWRS-------- 453 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILSTTHTI 341 F + VDPPR+GLD+A + + + Y+SCN +L R+L+ L T+ + Sbjct: 454 ----QGQHFDALVVDPPRTGLDNALIDTILQEKPAKFAYVSCNMATLARNLARLVPTYRV 509 Query: 342 ERLALFDQFPYTRHMECGVLLV 363 + D P T E V LV Sbjct: 510 AYIQPVDMLPQTPRCEAVVKLV 531 >gi|197119265|ref|YP_002139692.1| RNA methyltransferase, TrmA family [Geobacter bemidjiensis Bem] gi|197088625|gb|ACH39896.1| RNA methyltransferase, TrmA family [Geobacter bemidjiensis Bem] Length = 572 Score = 266 bits (681), Expect = 3e-69, Method: Composition-based stats. Identities = 88/387 (22%), Positives = 150/387 (38%), Gaps = 39/387 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAF-----QVPNLQIFRSEPIHYRMRAEFHIWHDGD 56 L+ +Y QLA K + + + I + + YR A+ I + Sbjct: 201 GCGLMQMRYPAQLAWKKSLVARHFRKYPSLFEVAIRETIGSPKELGYRNTAKLVIAGKNN 260 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINAL-----------MIEMMATIRLEPLLRAKLF 105 D ++ + T + ++I+ LIN + +++ LLR + Sbjct: 261 DPVIGIYRRNTHDVLQIEDCALHHPLINKVVKAAKAGIKKGKVQIYNPKSEMGLLRYLVV 320 Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD 165 ++ +++Q +V L+ + A ++ A+ Q I + I +D Sbjct: 321 RV---AEKTNQVMVVLVTTDQGYNEMHHLAKFIQQAVPEVSVVAQNINTSTGNVIFGTKD 377 Query: 166 YVD---ERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNG 221 + L I+ +SF Q N+G + E V A ++++YCG G Sbjct: 378 RSITKAQTLKAFVGDKIFNLSPHSFFQVNSGAARIIYEKVRELANLKGTERVIDVYCGIG 437 Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281 SL LA V+ +E + +V A N A NHV N + + E Sbjct: 438 GISLYLADQAREVVGIEFVEAAVADATINAALNHVENCHFEAGDAVHLIDEIGEE----- 492 Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILST-T 338 I ++PPR G D+ + V A P I+Y+SC+P++L RDL ILS Sbjct: 493 --------GGADLIVLNPPRKGCDEKVLRSVAAINPPRIIYVSCSPETLARDLDILSGLG 544 Query: 339 HTIERLALFDQFPYTRHMECGVLLVRK 365 + + D FP T H+E LL +K Sbjct: 545 YRTVEVQPVDMFPQTVHVEDVALLEKK 571 >gi|294784025|ref|ZP_06749347.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Fusobacterium sp. 1_1_41FAA] gi|294479837|gb|EFG27616.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Fusobacterium sp. 1_1_41FAA] Length = 458 Score = 266 bits (681), Expect = 3e-69, Method: Composition-based stats. Identities = 79/384 (20%), Positives = 160/384 (41%), Gaps = 34/384 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAF-QVPNLQI----FRSEPIHYRMRAEFHIWHDGD 56 + +YE QL K + ++M +P+++I + +YR + G+ Sbjct: 86 GCDFAMLKYESQLKYKKLMVEEVMRKIAGLPDIEISDVLASEDVYNYRNKIIEPFSVYGN 145 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-------LRAKLFQIDY 109 + F +++ E +D + S L N ++ E+ + + + L + Sbjct: 146 KIITGFFKRKSHEVFEVDENILNSKLGNRIIKELKEILNKNKISVYNEITHKGLLRNVMI 205 Query: 110 LTSQSDQAI-VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR---- 164 T+ +++A+ V +I + + + RLR+ + K I + + KT + Sbjct: 206 RTNSNNEAMLVLIINSNKITENIKNLLFRLREKIEEIK-SIYISLNSKKTNTVIGDKNIF 264 Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNF 223 Y ++ + + + SF Q N + + + I +++ Y G G Sbjct: 265 IYGEKSIKENLNGIEFHISPTSFFQINVKQAKRLYDIAINFFDNIDDKYIVDAYSGTGTI 324 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 +++A+ +V A+EI K + E N + N++ + S ++ L Sbjct: 325 GMIMAKKAKKVYAIEIVKSASEDGEKTAKENGIENIEFINGSVEK------------ELV 372 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST-THT 340 ++ + R TI DPPR GL+ + + V ++YISCNP + RD+ + S + Sbjct: 373 NLINANKRIDTIIFDPPRKGLEASIIDKVAELNLKEVVYISCNPSTFARDVKLFSEKGYV 432 Query: 341 IERLALFDQFPYTRHMECGVLLVR 364 +++L D FP T H+EC L+ R Sbjct: 433 LKKLQAVDMFPQTSHIECVGLIER 456 >gi|238926776|ref|ZP_04658536.1| TrmA family RNA methyltransferase [Selenomonas flueggei ATCC 43531] gi|238885308|gb|EEQ48946.1| TrmA family RNA methyltransferase [Selenomonas flueggei ATCC 43531] Length = 465 Score = 266 bits (681), Expect = 3e-69, Method: Composition-based stats. Identities = 80/388 (20%), Positives = 144/388 (37%), Gaps = 39/388 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-VPNLQIFR----SEPIHYRMRAEFHIWHDGD 56 L YE QL K ++ ++ +P + + EP +YR + +F I + Sbjct: 94 GCQLQHLSYEAQLRTKRAQVADALIHIGKLPQIPVMETLRAEEPWNYRNKMQFPIGRNSG 153 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALM-------IEMMATIRLEPLLRAKLFQIDY 109 + F Q + + + N L ++ + E + L I Sbjct: 154 KIVIGCFAQGSHRIINTENCHIQRAENNDLANAAREIAEQLHIPVYNEDTHKGVLRHIVG 213 Query: 110 LTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQL-------IGRANKTKICL 162 +S+ + ++ ++ +R+ L Q + T++ Sbjct: 214 RVGRSNDLMAIIVTATKQLPRAKDFVRMMRERLPNLVSVHQNIQTYRNNVIMGRDTQLLW 273 Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNG 221 R + + L L + SF Q N + E L A +++ YCG G Sbjct: 274 GRPTIIDSLGR----LNFHISPRSFFQVNTRQAERLYEQALTYADLHGTETVIDAYCGTG 329 Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281 +L LA+ +V +EI +P++ AR N N+V N + + + A+ + Sbjct: 330 TITLFLAQKARKVYGIEIVQPAILDARKNARDNNVKNAEFIVGDATAVMPALYK------ 383 Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILST-T 338 R + VDPPR G + + I+Y+SCNP +L RDL+IL Sbjct: 384 ------QGIRPDVVVVDPPRVGCTETVLRTFANMKPQRIVYVSCNPATLARDLAILKELG 437 Query: 339 HTIERLALFDQFPYTRHMECGVLLVRKP 366 + + + D FP T H+E LL ++ Sbjct: 438 YLAQEVQPVDLFPQTSHVENVCLLRKQK 465 >gi|302670309|ref|YP_003830269.1| 23S rRNA methyltransferase [Butyrivibrio proteoclasticus B316] gi|302394782|gb|ADL33687.1| 23S rRNA methyltransferase [Butyrivibrio proteoclasticus B316] Length = 475 Score = 266 bits (680), Expect = 4e-69, Method: Composition-based stats. Identities = 81/383 (21%), Positives = 151/383 (39%), Gaps = 35/383 (9%) Query: 2 SGTLLID-QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDG-DDLY 59 +ID Y++QL +K + +++ + + EP HYR + HD + Sbjct: 108 GACQMIDTPYDKQLRQKHAHVAELLEPYTRVAAFVGMEEPEHYRCKVHAVFTHDKKGNPL 167 Query: 60 HIMFDQQTKERMRIDYFMPGSLLINAL-----------MIEMMATIRLEPLLRAKLFQID 108 ++ + T + + ID + +A+ I+ LLR L +I Sbjct: 168 SGIYREGTHDVVPIDSCLLEDQKADAIITTIRGMLKSFKIKTYDEDNGFGLLRHVLIRIG 227 Query: 109 YLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD--- 165 T + +VT+ + + L + + + I D++ Sbjct: 228 KNTGEIMVVLVTV---SPIFPSKNNFVKALLKEHPEITTIVLNVNDKQTSMILGDKEKAM 284 Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFS 224 Y + + ++ SF Q N + + + ++ L+ Y G G Sbjct: 285 YGPGFIYDTCCGMKFKISPKSFYQVNPVQQEVLYNTAIEMAELKGDEVALDCYSGVGTIG 344 Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284 L+ + H V++VE+ +V+ A+ N N+V+N+ + F Q M Sbjct: 345 LIASPHVKEVISVELNPDAVKDAKINAKINNVSNITFYENDATRFMQQMAD--------- 395 Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCRDLSIL-STTHTI 341 + +F+DPPRSG + M+ P I+YISC+PDSL RDL ++ + + Sbjct: 396 ---SGDKADLVFMDPPRSGSTPEFIESMINLSPDKIVYISCSPDSLARDLELITKGGYKV 452 Query: 342 ERLALFDQFPYTRHMECGVLLVR 364 ++ D FP+TR +E LL + Sbjct: 453 KKAIPVDMFPFTRSIEMVTLLTK 475 >gi|50914683|ref|YP_060655.1| tRNA (Uracil-5-) -methyltransferase [Streptococcus pyogenes MGAS10394] gi|73920514|sp|Q5XAU1|Y1337_STRP6 RecName: Full=Uncharacterized RNA methyltransferase M6_Spy1337 gi|50903757|gb|AAT87472.1| tRNA (Uracil-5-) -methyltransferase [Streptococcus pyogenes MGAS10394] Length = 451 Score = 266 bits (680), Expect = 4e-69, Method: Composition-based stats. Identities = 81/386 (20%), Positives = 144/386 (37%), Gaps = 38/386 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIF-------RSEPIHYRMRAEFHIWHD 54 ++ Y +QL K D +RQ + F+ + F +P HYR + +F + Sbjct: 81 GCQIMHLAYPKQLDFKDDVIRQALKKFKPTGYEQFEIRPTLGMKKPDHYRAKLQFQLRSF 140 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGSLL---INALMIEMMATIRLEPLLRAKLFQIDYL- 110 G + +F Q + + ID + L I + +++ +L K+ I + Sbjct: 141 GGTVKAGLFSQGSHRLVPIDNCLVQDQLTQDIINKITQLVDKYKLPIYNERKIAGIRTIM 200 Query: 111 -----TSQSDQAIVTLIYHRLLDDAWRECAIRL---RDALHARKYQIQLIGRANKTKICL 162 S Q IV L E + ++T+I Sbjct: 201 VRKAQASDQVQIIVVSSKEVRLARFIGELTKAFPQVKTVALNSNCSKSSEIYGDETEILW 260 Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGNG 221 ++ + E + G L +F Q N + E V A G + +++ YCG G Sbjct: 261 GQEAIHEEVLDYGFAL----SPRAFYQLNPQQTEVLYGEVVKALDVGSKDHIIDAYCGVG 316 Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281 + A V ++I ++E A+ N + +N +++ + Sbjct: 317 SIGFAFAGKVKSVRGMDIIPEAIEDAQKNAKSMGFDNAYYEAGKAEDIIPKWYK------ 370 Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTH 339 YR I VDPPR+GLDD + + ++Y+SCN +L RDL L+ + Sbjct: 371 ------QGYRADAIIVDPPRTGLDDKLLKTILHYQPKQMVYVSCNTSTLARDLVQLTKIY 424 Query: 340 TIERLALFDQFPYTRHMECGVLLVRK 365 + + D FP+T E V L ++ Sbjct: 425 DVHYIQSVDMFPHTARTEAVVKLQKR 450 >gi|19746533|ref|NP_607669.1| RNA methyltransferase [Streptococcus pyogenes MGAS8232] gi|50401605|sp|Q8P017|Y1615_STRP8 RecName: Full=Uncharacterized RNA methyltransferase spyM18_1615 gi|19748743|gb|AAL98168.1| putative RNA methyltransferase [Streptococcus pyogenes MGAS8232] Length = 451 Score = 266 bits (680), Expect = 4e-69, Method: Composition-based stats. Identities = 82/386 (21%), Positives = 144/386 (37%), Gaps = 38/386 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIF-------RSEPIHYRMRAEFHIWHD 54 ++ Y +QL K D +RQ + F+ + F +P HYR + +F + Sbjct: 81 GCQIMHLAYPKQLDFKDDVIRQALKKFKPTGYEQFEIRPTLGMKKPDHYRAKLQFQLRSF 140 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGSLL---INALMIEMMATIRLEPLLRAKLFQIDYL- 110 G + +F Q + + ID + L I + +++ +L K+ I + Sbjct: 141 GGTVKAGLFSQGSHRLVPIDNCLVQDQLTQDIINKITQLVDKYKLPIYNERKIAGIRTIM 200 Query: 111 -----TSQSDQAIVTLIYHRLLDDAWRECAIRL---RDALHARKYQIQLIGRANKTKICL 162 S Q IV L E + ++T+I Sbjct: 201 VRKAQASDQVQIIVVSSKEVRLARFIGELTKAFPQVKTVALNSNCSKSSEIYGDETEILW 260 Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGNG 221 ++ + E + G L +F Q N + E V A G + +++ YCG G Sbjct: 261 GQEAIHEEVLDYGFAL----SPRTFYQLNPQQTEVLYGEVVKALDVGSKDHIIDAYCGVG 316 Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281 + A V ++I ++E A+ N A +N +++ + Sbjct: 317 SIGFAFAGKVKSVRGMDIISEAIEDAQKNAKAMGFDNAYYEAGKAEDIIPKWYK------ 370 Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTH 339 YR I VDPPR+GLDD + + ++Y+SCN +L RDL L+ + Sbjct: 371 ------QGYRADAIIVDPPRTGLDDKLLKTILHYQPKQMVYVSCNTSTLARDLVQLTKVY 424 Query: 340 TIERLALFDQFPYTRHMECGVLLVRK 365 + + D FP+T E V L ++ Sbjct: 425 DVHYIQSVDMFPHTARTEAVVKLQKR 450 >gi|139473396|ref|YP_001128112.1| RNA methyltransferase [Streptococcus pyogenes str. Manfredo] gi|134271643|emb|CAM29874.1| putative RNA methyltransferase [Streptococcus pyogenes str. Manfredo] Length = 451 Score = 266 bits (680), Expect = 4e-69, Method: Composition-based stats. Identities = 81/386 (20%), Positives = 144/386 (37%), Gaps = 38/386 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIF-------RSEPIHYRMRAEFHIWHD 54 ++ Y +QL K D +RQ + F+ + F +P HYR + +F + Sbjct: 81 GCQIMHLAYPKQLDFKDDVIRQALKKFKPTGYEQFEIRPTLGMKKPDHYRAKLQFQLRSF 140 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGSLL---INALMIEMMATIRLEPLLRAKLFQIDYL- 110 G + +F Q + + ID + L I + +++ +L K+ I + Sbjct: 141 GGTVKAGLFSQGSHRLVPIDNCLVQDQLTQDIINKITQLVDKYKLPIYNERKIAGIRTIM 200 Query: 111 -----TSQSDQAIVTLIYHRLLDDAWRECAIRL---RDALHARKYQIQLIGRANKTKICL 162 S Q IV L E + ++T+I Sbjct: 201 VRKAQASDQVQIIVVSSKEVRLARFIGELTKAFPQVKTVALNSNCSKSSEIYGDETEILW 260 Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGNG 221 ++ + E + G L +F Q N + E V A G + +++ YCG G Sbjct: 261 GQEAIHEEVLDYGFAL----SPRAFYQLNPQQTEVLYGEVVKALDVGSKDHIIDAYCGVG 316 Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281 + A V ++I ++E A+ N + +N +++ + Sbjct: 317 SIGFAFAGKVKSVRGMDIIPEAIEDAQKNAKSMGFDNAYYEAGKAEDIIPKWYK------ 370 Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTH 339 YR I VDPPR+GLDD + + ++Y+SCN +L RDL L+ + Sbjct: 371 ------QGYRADAIIVDPPRTGLDDKLLETILHYQPKQMVYVSCNTSTLARDLVQLTKIY 424 Query: 340 TIERLALFDQFPYTRHMECGVLLVRK 365 + + D FP+T E V L ++ Sbjct: 425 DVHYIQSVDMFPHTARTEAVVKLQKR 450 >gi|227534726|ref|ZP_03964775.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227187482|gb|EEI67549.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 455 Score = 266 bits (680), Expect = 4e-69, Method: Composition-based stats. Identities = 73/383 (19%), Positives = 136/383 (35%), Gaps = 47/383 (12%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPN-------LQIFRSEPIHYRMRAEFHIWHDGDDLYHIM 62 Y QL K D + Q + F+ I ++P HYR +A+F + + + Sbjct: 91 YPAQLRFKRDVVAQSLAKFKPTGWTHYDLRPTIGMAQPTHYRNKAQFPVRVIDGHVRAGL 150 Query: 63 FDQQTKERMRIDYFMPG-----------SLLINALMIEMMATIRLEPLLRAKLFQIDYLT 111 + + + + F+ ++ L I + + +++ + + + T Sbjct: 151 YAPNSHHLIPLTKFLTQAPLTMKVVTTLCQILEQLQIPIYNEKKRSGIVKTLVVRESFAT 210 Query: 112 SQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIG-------RANKTKICLDR 164 + VT I + E + L Q I ++++ Sbjct: 211 K---EVQVTFITNSPKLPHEGELLNGIATQLPMVVSIAQNINPGETSLIWGKESRLLAGL 267 Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELYCGNGNF 223 Y+ E L ++ +F Q N + A G L++ YCG G Sbjct: 268 PYIQETLL----GRTFQLSPQAFLQLNPKQTETLYTLAAKALDLGPHDTLIDAYCGIGTV 323 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 + LA+ + ++ + A N AN + N +++ +E Sbjct: 324 GISLAKGNQPIYGMDTIAEGIADAEANAKANGLTNAHYSVGKAEDIFPKWVQE------- 376 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILSTTHTI 341 + + VDPPR+GL+ A + + P +YISCNP +L RDL L+ + + Sbjct: 377 -----GMKPDAVIVDPPRAGLERAFIDALLELDPPKFVYISCNPSTLARDLVFLTKRYKV 431 Query: 342 ERLALFDQFPYTRHMECGVLLVR 364 + + D FP T E V R Sbjct: 432 DWIQSIDMFPQTARCEAVVKFTR 454 >gi|319744646|gb|EFV96993.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus agalactiae ATCC 13813] Length = 468 Score = 266 bits (680), Expect = 4e-69, Method: Composition-based stats. Identities = 79/379 (20%), Positives = 143/379 (37%), Gaps = 40/379 (10%) Query: 10 YEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 YEQQL K ++ + + + + P+ YR +A+ + L F Sbjct: 103 YEQQLLFKQKQVADNLYKIAHISDVLVEPTLGMTIPLAYRNKAQVPVRRVDGQLETGFFR 162 Query: 65 QQTKERMRIDYFMPGSLLINAL-----------MIEMMATIRLEPLLRAKLFQIDYLTSQ 113 + + + I+ ++ I+AL ++ + L+R + + + T Q Sbjct: 163 KNSHTLVSIEDYLIQEKEIDALINFTRDLLRKFDVKPYDEEQQSGLIRNLVVRRGHYTGQ 222 Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD----YVDE 169 +VT D E +L A + +Q I + + ++ Y + Sbjct: 223 LMLVLVTTRPKIFRIDQMIE---KLVSAFPSVVSIMQNIND-RNSNVIFGKEFRTLYGSD 278 Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLA 228 + Y SF Q N + + + + + D +++ Y G G L +A Sbjct: 279 TIEDQMLGNTYAISAQSFYQVNTEMAEKLYQKAIDFSDLNSEDIVIDAYSGIGTIGLSVA 338 Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288 + V VE+ + +V A+ N N + N V S++ +E Sbjct: 339 KQVKHVYGVEVVEKAVSDAKENATRNGITNSTYVADSAENAMAKWLKE------------ 386 Query: 289 SYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILST-THTIERLA 345 + I VDPPR GL ++ V I YISCN ++ RD+ + + + ++ Sbjct: 387 GIKPTVIMVDPPRKGLTESFVYSAAQTKADKITYISCNSATMARDIKLFEELGYHLVKIQ 446 Query: 346 LFDQFPYTRHMECGVLLVR 364 D FP T H+EC VLL R Sbjct: 447 PVDLFPMTHHVECVVLLQR 465 >gi|255505413|ref|ZP_05345917.3| 23S rRNA (uracil-5-)-methyltransferase RumA [Bryantella formatexigens DSM 14469] gi|255268319|gb|EET61524.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bryantella formatexigens DSM 14469] Length = 466 Score = 266 bits (680), Expect = 4e-69, Method: Composition-based stats. Identities = 76/388 (19%), Positives = 148/388 (38%), Gaps = 40/388 (10%) Query: 2 SGTLLID-QYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDG 55 G + + Y +QL K ++R + I +P +YR +A++ I D Sbjct: 93 GGCQIQEMDYAEQLRFKEKKVRGNLERIGKFTDIPMEPIIGMEQPFYYRNKAQYPIGKDK 152 Query: 56 DD-LYHIMFDQQTKERMRIDYFMPGSLLINAL-----------MIEMMATIRLEPLLRAK 103 D + + +T + G+ + + + L+R Sbjct: 153 DGHIVAGFYAGRTHSIIDNRRCFLGAEVNEEILNIIISYMEKEFVSPYDEKTGRGLVRHV 212 Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALH---ARKYQIQLIGRANKTKI 160 L + + T + ++ ++ E ++ + + + ++ Sbjct: 213 LIRCGFTTKEIMVCLIVNGTTLPKEEKLVEALRKVPNMTSISINTNREKTNVIMGKDVRL 272 Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCG 219 R Y+++ + + Y+ SF Q N + L A + + +LYCG Sbjct: 273 LWGRPYIEDYIG----NIRYQISPLSFFQVNPVQTEKLYSLALEYAGLTGKETVWDLYCG 328 Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279 G SL LA+ +V VE+ +++ A N N + N + ++E + R Sbjct: 329 IGTISLFLAQQARQVYGVEVIPQAIDDACRNAKINGIANAQFFVGRAEEILPEVYRR--- 385 Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCRDLSILS- 336 H + I VDPPR G DD+ + +++ P ++Y+SC+ +L RDL IL Sbjct: 386 --------HRIHAEVIVVDPPRKGCDDSLLSTIIEMQPERVVYVSCDSATLARDLRILCD 437 Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVR 364 + ++R DQFP + H+E L + Sbjct: 438 NGYALKRCRAVDQFPMSVHVETAAQLEK 465 >gi|322374343|ref|ZP_08048857.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus sp. C300] gi|321279843|gb|EFX56882.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus sp. C300] Length = 455 Score = 266 bits (680), Expect = 4e-69, Method: Composition-based stats. Identities = 73/380 (19%), Positives = 155/380 (40%), Gaps = 40/380 (10%) Query: 10 YEQQLAEKVDRLRQMMLAF-QVPNLQI----FRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 Y +QL K +++ + + ++++ PI YR +A+ + L F Sbjct: 91 YPEQLKFKTKQVKDSLYKIAGIRDVEVAETLGMEHPIQYRNKAQVPVRRVNGVLETGFFR 150 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIR-----------LEPLLRAKLFQIDYLTSQ 113 + + + M ++ F +I+ +++ + +R L+R + + + + Q Sbjct: 151 KNSHDLMPLEDFFIQDPVIDQVVVILRDLLRRYDLKPYDEKEQSGLIRNLVVRRGHYSGQ 210 Query: 114 SDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDE 169 +VT + L + + + + Q + KI +DY+ + Sbjct: 211 IMVILVTTRPKVFRVEQLIEQLIKQFPEIVSVMLNINDQNTNAIFGKEWKILYGQDYITD 270 Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLA 228 ++ ++ +F Q N + + + + + D+ ++ Y G G L +A Sbjct: 271 QMLGND----FQIAGPAFYQVNTEMAEKLYQTAIDFAELKADDVVIDAYSGIGTIGLSVA 326 Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288 +H V VE+ +VE ++ N A N++ N V +++ + +E Sbjct: 327 KHVKEVYGVEVIPEAVENSQKNAALNNITNAHYVCDTAENAMRNWLKE------------ 374 Query: 289 SYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST-THTIERLA 345 + I VDPPR GL ++ + I YISCN ++ RD+ + + ++++ Sbjct: 375 GIQPTVILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMARDIKLYQELGYELKKVQ 434 Query: 346 LFDQFPYTRHMECGVLLVRK 365 D FP T H+EC LLV++ Sbjct: 435 PVDLFPQTHHVECVSLLVKR 454 >gi|71904022|ref|YP_280825.1| tRNA (uracil-5-)-methyltransferase [Streptococcus pyogenes MGAS6180] gi|71803117|gb|AAX72470.1| tRNA (uracil-5-)-methyltransferase [Streptococcus pyogenes MGAS6180] Length = 451 Score = 266 bits (680), Expect = 4e-69, Method: Composition-based stats. Identities = 82/386 (21%), Positives = 145/386 (37%), Gaps = 38/386 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIF-------RSEPIHYRMRAEFHIWHD 54 ++ Y +QL K D +RQ + F+ + F +P HYR + +F + Sbjct: 81 GCQIMHLAYPKQLDFKDDVIRQALKKFKPTGYEQFEIRPTLGMKKPDHYRAKLQFQLRSF 140 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGSLL---INALMIEMMATIRLEPLLRAKLFQIDYL- 110 G + +F Q + + ID + L I + +++ +L K+ I + Sbjct: 141 GGTVKAGLFSQGSYRLVPIDNCLVQDQLTQDIINKITQLVDKYKLPIYNERKIAGIRTIM 200 Query: 111 -----TSQSDQAIVTLIYHRLLDDAWRECAIRL---RDALHARKYQIQLIGRANKTKICL 162 S Q IV L + E + ++T+I Sbjct: 201 VRKAQASDQVQIIVVSSKEVRLANFIGELTKAFPQVKTVALNSNRSKSSEIYGDETEILW 260 Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGNG 221 ++ + E + G L +F Q N + E V A G + +++ YCG G Sbjct: 261 GQEAIHEEVLDYGFAL----SPRAFYQLNPQQTEVLYGEVVKALDVGSKDHIIDAYCGVG 316 Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281 + A V ++I ++E A+ N A +N +++ + Sbjct: 317 SIGFAFAGKVKSVRGMDIIPEAIEDAQKNAKAMGFDNAYYEAGKAEDIIPKWYK------ 370 Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTH 339 YR I VDPPR+GLDD + + ++Y+SCN +L RDL L+ + Sbjct: 371 ------QGYRADAIIVDPPRTGLDDKLLKTILHYQPKQMVYVSCNTSTLARDLVQLTKVY 424 Query: 340 TIERLALFDQFPYTRHMECGVLLVRK 365 + + D FP+T E V L ++ Sbjct: 425 DVHYIQSVDMFPHTARTEAVVKLQKR 450 >gi|323467070|gb|ADX70757.1| 23S rRNA (Uracil-5-)-methyltransferase RumA [Lactobacillus helveticus H10] Length = 458 Score = 266 bits (679), Expect = 5e-69, Method: Composition-based stats. Identities = 77/388 (19%), Positives = 150/388 (38%), Gaps = 40/388 (10%) Query: 3 GTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFR----SEPIHYRMRAEFHIWHDGDDL 58 +L +Y++QL K +++ ++ + N+++ E + YR +A+ + L Sbjct: 82 ASLAHIKYDKQLDFKRNQVVNLLKKAHLENIEVGETLASPEEVGYRNKAQVPVREVNGQL 141 Query: 59 YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMA-----------TIRLEPLLRAKLFQI 107 F + + + M + +F I+ +++ + I +R + Sbjct: 142 EIGFFRRHSHDLMPLTHFFTTDPEIDRVLVAVRDILRKYKVPAYDEINNNGEVRYLEVRR 201 Query: 108 DYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD-RDY 166 T + +V L D + + + + L KT + L +DY Sbjct: 202 SKSTGEMMVILVCLH-----KDFMQLPNVAAEVSQIPGVSGLILNHNPKKTNVILGPKDY 256 Query: 167 V---DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGN 222 + ++++T L +R SF Q N+ + + D+ ++ Y G G Sbjct: 257 LVFGNDQITDQIGDLKFRISPQSFFQINSLQTPRLYNLAIKQADLKPDDVVIDAYSGIGT 316 Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282 L +A+H V +E+ + +++ A+ N N + N K ++E + Sbjct: 317 IGLSVAKHVKAVRGIEVVRDAIKDAKDNAKLNDITNAKYYLGKAEEIMPRWAK------- 369 Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILSTT-H 339 + +FVDPPR GL + I+YISCNP +L RDL + + Sbjct: 370 -----SGLKTDVVFVDPPRKGLTPEFINAAVKTGPKKIVYISCNPATLVRDLQLFQEKSY 424 Query: 340 TIERLALFDQFPYTRHMECGVLLVRKPS 367 R+ D FP T H+E +L R + Sbjct: 425 EFNRIDPVDMFPQTPHVESVTVLKRTKN 452 >gi|297205587|ref|ZP_06922983.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus jensenii JV-V16] gi|297150165|gb|EFH30462.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus jensenii JV-V16] Length = 481 Score = 266 bits (679), Expect = 5e-69, Method: Composition-based stats. Identities = 82/382 (21%), Positives = 160/382 (41%), Gaps = 33/382 (8%) Query: 3 GTLLIDQYEQQLAEKVDRLRQMMLAF---QVPNLQIFRSEPIHYRMRAEFHIWHDGDDLY 59 +L +YE+QL K ++ ++ + N + E + YR +A+ + + L Sbjct: 114 ASLAHIKYEKQLEFKRQQVINLLEKAHLNKKVNETVASPEEVGYRNKAQVPVRNVKGKLE 173 Query: 60 HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-------LRAKLFQIDYLTS 112 F + + + + ++ F I+ +++ +R + + ++ ++ S Sbjct: 174 IGFFRKHSHDLVPMENFFTTDPEIDRVLVATRDILRKNHVPAYDEVKNKGEVRYLEVRRS 233 Query: 113 QSD-QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR-DYV--- 167 +++ +V L+ + A + + + L KT + L + DY+ Sbjct: 234 KANSDMMVILVCLHKDFPQLVKVADEISQI--SGVVSVILNHNPKKTNVILGKHDYLLAG 291 Query: 168 DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLV 226 + ++ + ++ SF Q N+ + + + D +++ Y G G L Sbjct: 292 NPQIEDKIGDIRFKISAQSFFQINSLQTPRLYNLAIEKAGLSKKDTVIDAYSGIGTIGLS 351 Query: 227 LARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDID 286 +A+H +V VEI KP+V+ AR N N + N + V ++E E Sbjct: 352 VAKHVKQVYGVEIVKPAVQDARENALLNGIENAEYVCGKAEELMPNWVNE---------- 401 Query: 287 IHSYRFKTIFVDPPRSGLDDATVGM-VQAYP-HILYISCNPDSLCRDLSILST-THTIER 343 + IFVDPPR GL + V+ P I+YISCNP ++ RDL++ + E Sbjct: 402 --GMKADVIFVDPPRKGLTPEFIEASVKTNPQKIVYISCNPATMVRDLTMYQELGYDFEE 459 Query: 344 LALFDQFPYTRHMECGVLLVRK 365 + D FP T H+E +L +K Sbjct: 460 ITPVDMFPQTPHVESVTVLEKK 481 >gi|76787486|ref|YP_329132.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus agalactiae A909] gi|77406057|ref|ZP_00783133.1| RNA methyltransferase, TrmA family [Streptococcus agalactiae H36B] gi|76562543|gb|ABA45127.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus agalactiae A909] gi|77175337|gb|EAO78130.1| RNA methyltransferase, TrmA family [Streptococcus agalactiae H36B] Length = 451 Score = 266 bits (679), Expect = 5e-69, Method: Composition-based stats. Identities = 85/388 (21%), Positives = 153/388 (39%), Gaps = 42/388 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54 ++ QY++QL K D +RQ ++ F+ + I EP HYR + +F + Sbjct: 81 GCQIMHLQYDKQLEFKTDVIRQALMKFKPEGYENYEIRKTIGMPEPEHYRAKLQFQVRSF 140 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMI---EMMATIRLEPLLRAKLFQIDYLT 111 G ++ ++ Q T + I + L ++ E++ +L K+ + + Sbjct: 141 GGNVKAGLYAQGTHRLIDIKDCLVQDSLTQEMINRVAELLGKYKLPIYNERKIAGVRTVM 200 Query: 112 SQ----SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANK-------TKI 160 + S + + I + LD + + I L K I + T++ Sbjct: 201 IRRAQASGEVQLIFITSKRLD--FDDVVIELVREFPELKTVAVNINASKTSDIYGQITEV 258 Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCG 219 ++ ++E + G +L +F Q N + E V A DL++ YCG Sbjct: 259 IWGQESINEEVLDYGFSL----SPRAFYQLNPKQTQILYSEAVKALDVKDDDDLIDAYCG 314 Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279 G L A V ++I +++ A+ N N +++ E Sbjct: 315 VGTIGLAFAGKVKSVRGMDIIPEAIQDAKENALHMGFTNTHYEAGKAEDIIPRWYSE--- 371 Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILST 337 +R + VDPPR+GLDD + + P ++Y+SCN +L RDL L+ Sbjct: 372 ---------GFRANALIVDPPRTGLDDKLLNTILKMPPEKMVYVSCNTSTLARDLVTLTK 422 Query: 338 THTIERLALFDQFPYTRHMECGVLLVRK 365 + + + D FP+T E V L RK Sbjct: 423 VYHVHYIQSVDMFPHTARTEAVVKLQRK 450 >gi|332638388|ref|ZP_08417251.1| RNA methyltransferase [Weissella cibaria KACC 11862] Length = 496 Score = 266 bits (679), Expect = 5e-69, Method: Composition-based stats. Identities = 76/384 (19%), Positives = 142/384 (36%), Gaps = 47/384 (12%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHDGDDLYHIM 62 Y+ QL K D +RQ + ++ + I EP YR +A+F + L M Sbjct: 130 YDGQLEFKRDVIRQALEKYKPEGYEQFDLRPTIGMDEPDGYRNKAQFPVREVNGQLAVGM 189 Query: 63 FDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLFQIDYLT 111 + + + + + + ++ + + + + +++ + ++ T Sbjct: 190 YKRNSHDLVDLPKVSTQHPATLKVVRKVRDILADMEMPIYNERKNSGIVKTLIARVSETT 249 Query: 112 SQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIG-------RANKTKICLDR 164 IVT + D E R+ L Q I TK+ Sbjct: 250 GDVQLTIVTNGKYLPSAD---ELIARINQELPEVVSVHQNINSDKTSLVWGEDTKLLWGS 306 Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNF 223 +Y+ E + ++ +F Q N + ++A Q D L++ Y G G Sbjct: 307 EYITETINGK----TFKLSPRAFLQLNPRQTQRLYNEAISALDLTQADKLIDAYSGVGTI 362 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 + LA H V ++ +++ A N N V N ++++ E Sbjct: 363 GITLADHAGEVRGMDTVPEAIDDANENALDNGVKNAAYYTGAAEDLIPRWANE------- 415 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDAT-VGMVQAYP-HILYISCNPDSLCRDLSILSTTHTI 341 + + VDPPR+GLD+ + ++ P +Y+SCN +L RDL L+ + + Sbjct: 416 -----GWVADALVVDPPRTGLDEELRLTILDTQPDKFVYVSCNASTLARDLVDLTRVYNV 470 Query: 342 ERLALFDQFPYTRHMECGVLLVRK 365 E + D FP T E V +K Sbjct: 471 EYIQSIDMFPQTARWEGIVKFTKK 494 >gi|146295523|ref|YP_001179294.1| RNA methyltransferase [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145409099|gb|ABP66103.1| 23S rRNA m(5)U-1939 methyltransferase [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 452 Score = 266 bits (679), Expect = 5e-69, Method: Composition-based stats. Identities = 76/385 (19%), Positives = 154/385 (40%), Gaps = 40/385 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWHDGDD 57 L+ +Y+ QL K + + +I P YR + + D Sbjct: 80 GCHLMHAKYQHQLKLKKLLVEDAFRRIGKLSPRINDVIGMENPFRYRNKTALPVGGDYKK 139 Query: 58 LYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLFQ 106 + + T + + IDY + LI IE+ + + +LR + + Sbjct: 140 PQIGFYRKMTHDIVDIDYCLIQHEFCDDVIKGMKDLIQKHKIEVYDEKKHKGVLRHIVVR 199 Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD- 165 + D+ ++ L+ ++ ++ L + ++ + L +T + L + Sbjct: 200 NSFA---FDEMMIILVCTKVPENLETIKKDILNNF--SKIKSLYLNLNPKRTNVILGDED 254 Query: 166 ---YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNG 221 + + L + SF Q N+ + V+ + I + + ++Y G G Sbjct: 255 ILIWGSSTIKDRIGNLTFEISPKSFFQVNSMQTEVLYSQVVKYLRNIDAEIVFDVYSGIG 314 Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281 S+ +A +V +EI + +VE A+ + N ++N++ + ++ Sbjct: 315 TISMFIAPFCKKVYTIEIVEDAVEDAKKSSKNNGISNIEFICGRAE------------IE 362 Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STT 338 + + + + + +DPPRSG + + + P+I+Y+SCNP +L RD SIL S Sbjct: 363 IPKLLKNGIIPQAVILDPPRSGCEKELLESLIEHKIPNIIYVSCNPSTLARDSSILFSNG 422 Query: 339 HTIERLALFDQFPYTRHMECGVLLV 363 + I + D FP T H+EC VL+ Sbjct: 423 YEILEVQPVDMFPQTFHVECVVLMT 447 >gi|227893050|ref|ZP_04010855.1| TrmA family tRNA (uracil-5-)-methyltransferase [Lactobacillus ultunensis DSM 16047] gi|227865163|gb|EEJ72584.1| TrmA family tRNA (uracil-5-)-methyltransferase [Lactobacillus ultunensis DSM 16047] Length = 450 Score = 266 bits (679), Expect = 5e-69, Method: Composition-based stats. Identities = 79/385 (20%), Positives = 151/385 (39%), Gaps = 40/385 (10%) Query: 3 GTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFR----SEPIHYRMRAEFHIWHDGDDL 58 +L +YE+QL K +++ ++ + ++++ + E YR +A+ + L Sbjct: 82 ASLAHIKYEKQLVFKRNQVVNLLKKAHLDDIEVGQTLASPEQKGYRNKAQVPVREVKGKL 141 Query: 59 YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMA-----------TIRLEPLLRAKLFQI 107 F + + + + + F I+ +++ + I + +R + Sbjct: 142 EIGFFRRHSHDLVPLTNFFTTDPEIDRVLVAVRDVLRRNQVPAYDEIHNKGEVRYLDVRR 201 Query: 108 DYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR-DY 166 T + +V L +D + + + I L KT + L + DY Sbjct: 202 SKATGEIMVILVCLH-----NDFVQLPRVAAEISQIPGVTSIILNHNPKKTNVILGQKDY 256 Query: 167 V---DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGN 222 V D+ +T L +R SF Q N+ + + D++ + Y G G Sbjct: 257 VVYGDDHITDQIGNLKFRISPKSFFQINSLQTPRLYNLAIEKADLKPSDVVVDAYSGIGT 316 Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282 L +A+H V +E+ +V A N N+++N K V ++E +E Sbjct: 317 IGLSVAKHVKAVRGMEVIADAVRDANANAKLNNISNAKYVTGKAEEIMPHWAKE------ 370 Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STTH 339 + +FVDPPR GL + ++YISCNP ++ RDL + + Sbjct: 371 ------GLKTDVVFVDPPRKGLTPEFIDATVKTGPKKVVYISCNPATMIRDLQLFKEQGY 424 Query: 340 TIERLALFDQFPYTRHMECGVLLVR 364 +R+ D FP T H+E +L + Sbjct: 425 QFDRIDPVDMFPQTPHVEAVTILTK 449 >gi|293115663|ref|ZP_05792525.2| 23S rRNA (uracil-5-)-methyltransferase RumA [Butyrivibrio crossotus DSM 2876] gi|292808836|gb|EFF68041.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Butyrivibrio crossotus DSM 2876] Length = 366 Score = 266 bits (679), Expect = 5e-69, Method: Composition-based stats. Identities = 78/379 (20%), Positives = 150/379 (39%), Gaps = 36/379 (9%) Query: 6 LIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHD-GDDLYHIMFD 64 + +Y + L K + +++ F N I EP YR + + D ++Y ++ Sbjct: 1 MGKKYSESLEYKQKMIEKLIRPFCKVNKIIGMDEPYFYRNKVHAVVGGDRKGNIYAGTYE 60 Query: 65 QQTKERMRIDYFMPGSLL---INALMIEMMATIRLEPLL----RAKLFQIDYLTSQ-SDQ 116 + + + ID + + I A +I++M + + P R L I T++ + + Sbjct: 61 AGSHKIVPIDKCLLDNEKADAIIATVIKLMKSFKYRPYNEDTGRGFLRHILIRTAEVTGE 120 Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGR-------ANKTKICLDRDYVDE 169 +VTL+ + + L + + K + + Y+++ Sbjct: 121 IMVTLVVGENIFPSKSNFIKALTAEHPEITTIVMNVNSKRTSMVLGEKEETLYGKGYIED 180 Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNFSLVLA 228 L +R SF Q N + + A + ++ + Y G G + + Sbjct: 181 ILCGK----RFRISSKSFYQVNHEQTEKLYNIAIGYAALTGKENVFDAYSGIGTIGICAS 236 Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288 + V VE+ + +V+ A N N++ NVK + + E ++ Sbjct: 237 DNALSVTGVELNRDAVKDALTNCKLNNLKNVKFMAGDAGE------------HMEKEAAS 284 Query: 289 SYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STTHTIERLA 345 ++ +F+DPPRSG + V A ++YISC P+SL RDL + + + Sbjct: 285 GRKYDVVFMDPPRSGSSLKFINSVCKMAPSKVVYISCGPESLARDLQLFKKKGYRVVECQ 344 Query: 346 LFDQFPYTRHMECGVLLVR 364 D F +T H+EC VLL + Sbjct: 345 PVDMFGWTGHVECVVLLTK 363 >gi|149003890|ref|ZP_01828713.1| RNA methyltransferase, TrmA family protein [Streptococcus pneumoniae SP14-BS69] gi|237650085|ref|ZP_04524337.1| RNA methyltransferase [Streptococcus pneumoniae CCRI 1974] gi|237822146|ref|ZP_04597991.1| RNA methyltransferase [Streptococcus pneumoniae CCRI 1974M2] gi|147758120|gb|EDK65124.1| RNA methyltransferase, TrmA family protein [Streptococcus pneumoniae SP14-BS69] Length = 541 Score = 265 bits (678), Expect = 6e-69, Method: Composition-based stats. Identities = 70/390 (17%), Positives = 153/390 (39%), Gaps = 40/390 (10%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAF-QVPNLQI----FRSEPIHYRMRAEFHIWHDGDDLY 59 L Y +QL K +++ + + ++++ P+ YR +A+ + L Sbjct: 83 LGHLSYPEQLKFKTKQVKDSLYKIAGIADVEVAETLGMEHPVKYRNKAQVPVRRVNGVLE 142 Query: 60 HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIR-----------LEPLLRAKLFQID 108 F + + + M ++ F +I+ +++ + IR L+R + + Sbjct: 143 TGFFRKNSHDLMPLEDFFIQDPVIDQVVVALRDLIRRFDLKPYDEKEQSGLIRNLVVRRG 202 Query: 109 YLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR 164 + + Q +VT + L + + + + Q + + + Sbjct: 203 HYSGQIMVVLVTTRPKVFRVDQLIEQVIKQFPEIVSVMQNINDQNTNAIFGKEWRTLYGQ 262 Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNF 223 DY+ +++ ++ +F Q N + + + + + + D++ + Y G G Sbjct: 263 DYITDQMLGND----FQIAGPAFYQVNTEMAEKLYQTAIDFVELKKDDVIIDAYSGIGTI 318 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 L +A+H V VE+ +VE ++ N + N + N V +++ + +E Sbjct: 319 GLSVAKHVKEVYGVELIPEAVENSQKNASLNKITNAHYVCDTAENAMKKWLKE------- 371 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST-THT 340 + I VDPPR GL ++ + I YISCN ++ RD+ + + Sbjct: 372 -----GIQPTVILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMARDIKLYQELGYE 426 Query: 341 IERLALFDQFPYTRHMECGVLLVRKPSGWH 370 ++++ D FP T H+E LL + H Sbjct: 427 LKKVQPVDLFPQTHHVETVALLSKLDVDKH 456 >gi|77406146|ref|ZP_00783219.1| RNA methyltransferase, TrmA family [Streptococcus agalactiae H36B] gi|77175269|gb|EAO78065.1| RNA methyltransferase, TrmA family [Streptococcus agalactiae H36B] Length = 453 Score = 265 bits (678), Expect = 6e-69, Method: Composition-based stats. Identities = 78/381 (20%), Positives = 142/381 (37%), Gaps = 40/381 (10%) Query: 10 YEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 YEQQL K ++ + + + + P+ YR +A+ + L F Sbjct: 88 YEQQLLFKQKQVADNLYKIAHISDVLVEPTLGMTIPLAYRNKAQVPVRRVDGQLETGFFR 147 Query: 65 QQTKERMRIDYFMPGSLLINAL-----------MIEMMATIRLEPLLRAKLFQIDYLTSQ 113 + + + I+ ++ I+AL ++ + L+R + + + T Q Sbjct: 148 KNSHTLVSIEDYLIQEKEIDALINFTRDLLRKFDVKPYDEEQQSGLIRNLVVRRGHYTGQ 207 Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD----YVDE 169 +VT D E +L A + +Q I + + ++ Y + Sbjct: 208 LMLVLVTTRPKIFRIDQMIE---KLVSAFPSVVSIMQNIND-RNSNVIFGKEFRTLYGSD 263 Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLA 228 + Y SF Q N + + + + + D +++ Y G G L +A Sbjct: 264 TIEDQMLGNTYAISAQSFYQVNTEMAEKLYQKAIDFSDLNSEDIVIDAYSGIGTIGLSVA 323 Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288 + V VE+ + +V A+ N N + N V S++ +E Sbjct: 324 KQVKHVYGVEVVEKAVSDAKENATRNGITNSTYVADSAENAMAKWLKE------------ 371 Query: 289 SYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILST-THTIERLA 345 + I VDPPR GL ++ V I YISCN ++ RD+ + + + ++ Sbjct: 372 GIKPTVIMVDPPRKGLTESFVYSAAQTKADKITYISCNSATMARDIKLFEELGYHLVKIQ 431 Query: 346 LFDQFPYTRHMECGVLLVRKP 366 D FP T H+EC LL R Sbjct: 432 PVDLFPMTHHVECVALLQRSK 452 >gi|306829492|ref|ZP_07462682.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus mitis ATCC 6249] gi|304428578|gb|EFM31668.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus mitis ATCC 6249] Length = 452 Score = 265 bits (678), Expect = 6e-69, Method: Composition-based stats. Identities = 71/380 (18%), Positives = 155/380 (40%), Gaps = 40/380 (10%) Query: 10 YEQQLAEKVDRLRQMMLAF-QVPNLQI----FRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 Y +QL K +++ + + ++++ P+ YR +A+ + L F Sbjct: 88 YSEQLKFKTKQVKDSLYKIAGIRDIEVAETLGMDHPVKYRNKAQVPVRRVNGILETGFFR 147 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIR-----------LEPLLRAKLFQIDYLTSQ 113 + + M ++ F +I+ +++ + +R L+R + + + + Q Sbjct: 148 KNSHYLMPLEDFFIQDPVIDQVVVALRDLLRRYDLKPYDEKEQSGLIRNLVVRRGHHSGQ 207 Query: 114 SDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDE 169 +VT + L + + + + + + K +DY+ + Sbjct: 208 IMVIMVTTRPKVFRVEQLIEHLIKQFPEIVSVMQNINDRNTNAIFGKEWKTLYGQDYITD 267 Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLA 228 ++ ++ +F Q N + + + + + + D+ ++ Y G G L +A Sbjct: 268 QMLGND----FQISGPAFYQVNTEMAEKLYQTAIDFAELREDDVVIDAYSGIGTIGLSVA 323 Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288 +H V VE+ +VE ++ N A N++ N V +++ N +K+ Sbjct: 324 KHVKEVYGVEVIAEAVENSQKNAALNNITNAHYVCDTAE------------NAMKNWFKE 371 Query: 289 SYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILST-THTIERLA 345 + I VDPPR GL ++ + I YISCN ++ RD+ + + ++++ Sbjct: 372 GIQPSVILVDPPRKGLTESFIKASAQTGANRIAYISCNVATMARDIKLYQELGYELKKVQ 431 Query: 346 LFDQFPYTRHMECGVLLVRK 365 D FP T H+EC LLV++ Sbjct: 432 PVDLFPQTHHVECVSLLVKR 451 >gi|296877010|ref|ZP_06901054.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus parasanguinis ATCC 15912] gi|296432045|gb|EFH17848.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus parasanguinis ATCC 15912] Length = 450 Score = 265 bits (678), Expect = 6e-69, Method: Composition-based stats. Identities = 76/386 (19%), Positives = 144/386 (37%), Gaps = 38/386 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54 ++ +Y++QL K D L+Q + F + I EP++YR + +F Sbjct: 81 GCQIMHLKYDKQLEFKTDLLQQALKKFSPEGFEQYDIRPTIGMQEPLYYRAKLQFQTRKF 140 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----------LRAKL 104 + ++ Q + + + + +I A+ ++ + + +R + Sbjct: 141 KGQVKAGLYAQNSHYLVELKDCLVQDPVIQAIANDLADLLTYYQIPIADERKELGVRTMM 200 Query: 105 FQIDYLTSQSDQAIVT--LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162 + + Q +VT I + L + + + +T+I Sbjct: 201 IRRARKSGQVQIIVVTSRQINVKNLVEDLVTKHPEIVTVAVNKNTSRSSEIYGEQTQIIW 260 Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGNG 221 + + E + + +F Q N + E V A + L++ YCG G Sbjct: 261 GEEAILEGVL----DYEFSLSPRAFYQLNPEQTEVLYSEAVKALDVSPEDHLIDAYCGVG 316 Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281 A V ++I ++E A+YN N +++E +E Sbjct: 317 TIGFAFANRVKSVRGMDIIPEAIEDAKYNAKRMGFENTHYEAGTAEEIIPRWYQE----- 371 Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTH 339 YR + VDPPR+GL + + A ++Y+SCN +L RDL L+ + Sbjct: 372 -------GYRANAVIVDPPRTGLGTKLIETLLHYAPEKMVYVSCNVSTLARDLVALTKVY 424 Query: 340 TIERLALFDQFPYTRHMECGVLLVRK 365 +E + D FP+T E V LV+K Sbjct: 425 QVEYIQSVDMFPHTARTEAVVKLVKK 450 >gi|331266416|ref|YP_004326046.1| SAM-dependent methyltransferase related to tRNA (uracil-5-)-methyltransferase [Streptococcus oralis Uo5] gi|326683088|emb|CBZ00705.1| SAM-dependent methyltransferase related to tRNA (uracil-5-)-methyltransferase [Streptococcus oralis Uo5] Length = 452 Score = 265 bits (678), Expect = 6e-69, Method: Composition-based stats. Identities = 68/379 (17%), Positives = 150/379 (39%), Gaps = 40/379 (10%) Query: 10 YEQQLAEKVDRLRQMMLAF-QVPNLQI----FRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 Y +QL K +++ + + ++++ P+ YR +A+ + L F Sbjct: 88 YPEQLKFKTKQVKDSLYKIAGIIDVEVAETLGMENPVKYRNKAQVPVRRVNGVLETGFFR 147 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIR-----------LEPLLRAKLFQIDYLTSQ 113 + + + M ++ F +I+ +++ + +R L+R + + + + Q Sbjct: 148 KNSHDLMPLEDFFIQDPVIDQVVVALRDLLRRYDLKPYDEKEQSGLIRNLVVRRGHYSGQ 207 Query: 114 SDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDE 169 +VT + L + + + + Q + K +DY+ + Sbjct: 208 IMVILVTTRPKIFRVEQLIEQLIKQFPEIVSVMQNINDQNTNAIFGKEWKTLYGQDYITD 267 Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLA 228 ++ ++ +F Q N + + + + + + D+ ++ Y G G L +A Sbjct: 268 QMLGND----FQISGPAFYQVNTEMAEKLYQTAIDFAELREDDVVIDAYSGIGTIGLSVA 323 Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288 +H V VE+ +VE ++ N N ++N V +++ + +E Sbjct: 324 KHVKEVYGVEVIPEAVENSQKNAELNGISNAHYVCDTAENAMKNWLKE------------ 371 Query: 289 SYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST-THTIERLA 345 + I VDPPR GL ++ + I YISCN ++ RD+ + + + ++ Sbjct: 372 GIQPTVILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMARDIKLYQELGYELRKVQ 431 Query: 346 LFDQFPYTRHMECGVLLVR 364 D FP T H+EC L + Sbjct: 432 PVDLFPQTHHVECVSYLEK 450 >gi|315613133|ref|ZP_07888043.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis ATCC 49296] gi|315314695|gb|EFU62737.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis ATCC 49296] Length = 452 Score = 265 bits (678), Expect = 8e-69, Method: Composition-based stats. Identities = 71/380 (18%), Positives = 155/380 (40%), Gaps = 40/380 (10%) Query: 10 YEQQLAEKVDRLRQMMLAF-QVPNLQI----FRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 Y +QL K +++ + + ++++ P+ YR +A+ + L F Sbjct: 88 YSEQLKFKTKQVKDSLYKIAGITDVEVAETLGMENPVKYRNKAQVPVRRVNGVLETGFFR 147 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIR-----------LEPLLRAKLFQIDYLTSQ 113 + + + M ++ F +I+ +++ + +R L+R + + + + Q Sbjct: 148 KNSHDLMPLEDFFIQDPVIDQVVVVLRDLLRRFDLKPYDEKEQSGLIRNLVVRRGHYSGQ 207 Query: 114 SDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDE 169 +VT + L D + + + Q + + +DY+ + Sbjct: 208 IMVILVTTRPKIFRVEQLIDQLIKQFPEIVSVMQNINDQNTNAIFGKEWRTLYGQDYITD 267 Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLA 228 ++ ++ +F Q N + + + + + + D+ ++ Y G G L +A Sbjct: 268 QMFGND----FQIAGPAFYQVNTQMAEKLYQTAIDFAELREDDVVIDAYSGIGTIGLSVA 323 Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288 +H V VE+ +VE ++ N A N++ N V +++ + +E Sbjct: 324 KHVKEVYGVEMIPEAVENSQKNAALNNITNAHYVCDTAENAMKNWLKE------------ 371 Query: 289 SYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST-THTIERLA 345 + I VDPPR GL ++ + I YISCN ++ RD+ + + ++++ Sbjct: 372 GIQPTVILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMARDIKLYQELGYELKKVQ 431 Query: 346 LFDQFPYTRHMECGVLLVRK 365 D FP T H+EC LLV++ Sbjct: 432 PMDLFPQTHHVECVSLLVKR 451 >gi|22298485|ref|NP_681732.1| putative RNA methyltransferase [Thermosynechococcus elongatus BP-1] gi|50401571|sp|Q8DKB7|Y942_THEEB RecName: Full=Uncharacterized RNA methyltransferase tlr0942 gi|22294665|dbj|BAC08494.1| tlr0942 [Thermosynechococcus elongatus BP-1] Length = 449 Score = 265 bits (678), Expect = 8e-69, Method: Composition-based stats. Identities = 75/377 (19%), Positives = 146/377 (38%), Gaps = 42/377 (11%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIF-----RSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 Y QLA K ++ + Q F P YR + + + + + Sbjct: 90 YATQLAAKEQLVKDAIARIGHLEPQAFLPILAAPNPFGYRNKVTYPLGRRHGAVVAGYYQ 149 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDY------LTSQSDQAI 118 + + + ++ +N L+ + ++ P+ R + + + + ++ + + Sbjct: 150 KGSHHLVNLNQCPVQDPRLNPLLAALKQALQPWPIYREQTHEPGFRHLGLRIGQRTGEQL 209 Query: 119 VTLIYHRLL-------DDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERL 171 +TL+ L + W + + + + ++T++ R Y+ E + Sbjct: 210 ITLVLAGPLPAGLAAEAEGWLQRFQGVIGVCVNFNHHVGNRIFGDETQVLAGRPYLWEEM 269 Query: 172 TVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGI-QGDLLELYCGNGNFSLVLARH 230 + ++ +F Q N ++ + Q L++LYCG G SL LA Sbjct: 270 A----GVRFQIASTTFFQVNTAQAEQLVTTLRDWIAPTGQERLVDLYCGVGTLSLPLAGA 325 Query: 231 FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY 290 V+ VE+ SV+ A N N +NN V ++E+ + Sbjct: 326 VAEVIGVEVHSASVQQAIANAQHNGINNAHFVCAKAEEWLPRYDQAV------------- 372 Query: 291 RFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILS--TTHTIERLAL 346 + +DPPR G D A + + P +LY+SC+P +L RDL+ L T+ + ++ Sbjct: 373 --DVLILDPPRKGCDRAVLDAILHNCPPRLLYVSCHPATLARDLAHLCSTGTYQLAKIQP 430 Query: 347 FDQFPYTRHMECGVLLV 363 D FP T H+E LL Sbjct: 431 LDMFPQTAHVETIALLT 447 >gi|323141153|ref|ZP_08076054.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Phascolarctobacterium sp. YIT 12067] gi|322414296|gb|EFY05114.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Phascolarctobacterium sp. YIT 12067] Length = 456 Score = 265 bits (677), Expect = 8e-69, Method: Composition-based stats. Identities = 84/387 (21%), Positives = 153/387 (39%), Gaps = 40/387 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWHDGDD 57 L Y+ QL K +++ + NL+ + +EP YR + +F D + Sbjct: 85 GCQLQHLSYKGQLECKRQQVQDALTRIGHLNLEALPVLGAAEPWSYRNKMQFPAAADAEG 144 Query: 58 LYH-IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIR-----------LEPLLRAKLF 105 + + T + D M NA+M + ++ + L+R + Sbjct: 145 VLQIGCYATATHSVVDTDACMISKEANNAIMKTVRTWMQHYNISAYDEKTGKGLVRHIMG 204 Query: 106 QIDYLTSQSDQAIVT---LIYHRLLDDAWRECAI-RLRDALHARKYQIQLIGRANKTKIC 161 ++ + + I+T I HR + W + + L + + + +KT++ Sbjct: 205 RVGVHSGEVMAVIITSGYDIPHRGVLIEWLKRHVPGLVSVVQNINKKQTNVVMGSKTRVL 264 Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220 + + + L +L + +F Q N+ + L A + ++++YCG Sbjct: 265 YGPESIKDSLG----SLSFHISAQAFFQVNSEQAEKLYNKALEFAALSGKETVVDVYCGT 320 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G SL LARH +V +EI P++E A+ N N N + + + Sbjct: 321 GTISLYLARHAKQVYGIEIVAPAIENAKKNAEENKCANAEFICGDAA------------V 368 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST- 337 L + R + VDPPR+G + + + ++Y+SCNP SL RDL+ + Sbjct: 369 ELPKLLAGGVRPDVVVVDPPRAGCEQKVLAAIAEVQPERVVYVSCNPASLARDLAFMEQH 428 Query: 338 THTIERLALFDQFPYTRHMECGVLLVR 364 + D FP T H+EC LL R Sbjct: 429 GYKAIVAQPVDMFPMTSHVECVTLLTR 455 >gi|257451727|ref|ZP_05617026.1| tRNA (Uracil-5-) -methyltransferase [Fusobacterium sp. 3_1_5R] gi|317058286|ref|ZP_07922771.1| tRNA (Uracil-5-)-methyltransferase [Fusobacterium sp. 3_1_5R] gi|313683962|gb|EFS20797.1| tRNA (Uracil-5-)-methyltransferase [Fusobacterium sp. 3_1_5R] Length = 453 Score = 265 bits (677), Expect = 8e-69, Method: Composition-based stats. Identities = 86/387 (22%), Positives = 163/387 (42%), Gaps = 34/387 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-----IFRSEPIHYRMRAEFHIWHDGD 56 + +YE QL K ++++M N I E HYR + Sbjct: 80 GCDFAMAKYEAQLQYKTAMVKEVMERIGKLNSNLVLDCIASPEEKHYRNKVIEPFSKHKG 139 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMA-------TIRLEPLLRAKLFQIDY 109 + F +++ E ++ M S L N ++ ++ E + L I Sbjct: 140 KIITGFFQRRSHEVFEVEENMLNSKLGNKIIETFKQYANQEKLSVYDEKKHQGLLRNIMI 199 Query: 110 LTSQSDQAIVTLI-YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR---- 164 T+ S +A++ LI + ++++ ++ +++ + K I L KT + L Sbjct: 200 RTNSSQEAMLVLIVNAKKIEESLKKILLQMPKNIPELK-SIYLSLNTRKTNVVLGDKNIC 258 Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNF 223 + ++ L + + +SF Q N H+ E L+ I+ ++++ Y G G Sbjct: 259 IWGEKTLKEELFGIHFHISPSSFFQINVPQTKHLYEKALSLIPKIENKNVVDAYSGTGTI 318 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 ++L+R +V A+EI + + NH++N++ + + E +RL Sbjct: 319 GMLLSRKAKKVYAIEIVESASRDGAKTAKENHIDNIEFICGPVE---------VELDRLL 369 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST-THT 340 + I DPPR G++++ + V P ++YISCNP +L RDL I++ + Sbjct: 370 E---EGKNLDAIVFDPPRKGIEESILRKVAEVGIPEMVYISCNPSTLARDLKIMAECGYQ 426 Query: 341 IERLALFDQFPYTRHMECGVLLVRKPS 367 + + FD FP T H+EC L+ R S Sbjct: 427 VGEIQPFDMFPQTSHVECIALIQRVKS 453 >gi|182418140|ref|ZP_02949440.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium butyricum 5521] gi|237666196|ref|ZP_04526183.1| 23S rRNA (uracil-5-)-methyltransferase [Clostridium butyricum E4 str. BoNT E BL5262] gi|182377958|gb|EDT75498.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium butyricum 5521] gi|237658286|gb|EEP55839.1| 23S rRNA (uracil-5-)-methyltransferase [Clostridium butyricum E4 str. BoNT E BL5262] Length = 454 Score = 265 bits (677), Expect = 8e-69, Method: Composition-based stats. Identities = 86/392 (21%), Positives = 148/392 (37%), Gaps = 45/392 (11%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56 TL YE QL K R++ + + N I YR + +F + Sbjct: 80 GCTLQHLSYEGQLDYKFSRVKDCIRKIGGLDESIVNYPIGMDGVYRYRNKVQFPVGLVNG 139 Query: 57 DLYHIMFDQQTKERMRIDYFMPG---SLLINALMIEMMATIRLEP-----------LLRA 102 L F +++ E + +D + S I +++ M + P L+R Sbjct: 140 KLSIGFFSEKSHEIIDMDTCLLQDEESERIVSIIRNWMNEYSIMPAKKDGKLFKNGLVRH 199 Query: 103 KLFQIDYLTSQSDQAIVTLIYHRL----LDDAWRECAIRLRDALHARKYQIQLIGRANKT 158 + + + T + +VT L D+ ++ + + + K Sbjct: 200 IVIRKAFKTDEVMVILVTTNKKIPYVNELIDSLNSNNNSIKSIVQNINDKDTNLVMGEKC 259 Query: 159 KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLEL 216 DY+ + + + SF Q N + L + GD + + Sbjct: 260 ITLWGSDYICDYIG----EYKFNISPLSFFQVNPVQTEVLYNKALE-YADLNGDEIVFDA 314 Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276 YCG G SL L++ +V VEI +++ A+ N N++NN + S+E Sbjct: 315 YCGTGTISLFLSQKAKKVYGVEIIPQAIDNAKVNAEINNINNAEFFVGKSEEI------- 367 Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSI 334 + + I VDPPR G D + + I+Y+SC+P +L RDL+ Sbjct: 368 -----IPKLIDDGIIPDVIVVDPPRKGCDSKLLDALGKAKPKKIVYVSCDPSTLARDLNY 422 Query: 335 L-STTHTIERLALFDQFPYTRHMECGVLLVRK 365 L S + E + D FP T+H+E LLV+K Sbjct: 423 LESKGYKTEEVQPVDMFPMTKHVENVALLVKK 454 >gi|182683977|ref|YP_001835724.1| RNA methyltransferase [Streptococcus pneumoniae CGSP14] gi|182629311|gb|ACB90259.1| RNA methyltransferase, TrmA family [Streptococcus pneumoniae CGSP14] Length = 541 Score = 265 bits (677), Expect = 8e-69, Method: Composition-based stats. Identities = 69/390 (17%), Positives = 152/390 (38%), Gaps = 40/390 (10%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAF-QVPNLQI----FRSEPIHYRMRAEFHIWHDGDDLY 59 L Y +QL K +++ + + ++++ P+ YR +A+ + L Sbjct: 83 LGHLSYPEQLKFKTKQVKDSLYKIAGIADVEVAETLGMEHPVKYRNKAQVPVRRVNGVLE 142 Query: 60 HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIR-----------LEPLLRAKLFQID 108 F + + M ++ F +I+ +++ + +R L+R + + Sbjct: 143 TGFFRKNSHNLMPLEDFFIQDPVIDQVVVALRDLLRRFDLKPYDEKEQSGLIRNLVVRRG 202 Query: 109 YLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR 164 + + Q +VT + L + + + + Q + + + Sbjct: 203 HYSGQIMVVLVTTRPKVFRVDQLIEQVIKQFPEIVSVMQNINDQNTNAIFGKEWRTLYGQ 262 Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNF 223 DY+ +++ ++ +F Q N + + + + + + D++ + Y G G Sbjct: 263 DYITDQMLGND----FQIAGPAFYQVNTEMAEKLYQTAIDFVELKKDDVIIDAYSGIGTI 318 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 L +A+H V VE+ +VE ++ N + N + N V +++ + +E Sbjct: 319 GLSVAKHVKEVYGVELIPEAVENSQKNASLNKITNAHYVCDTAENAMKKWLKE------- 371 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST-THT 340 + I VDPPR GL ++ + I YISCN ++ RD+ + + Sbjct: 372 -----GIQPTVILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMARDIKLYQELGYE 426 Query: 341 IERLALFDQFPYTRHMECGVLLVRKPSGWH 370 ++++ D FP T H+E LL + H Sbjct: 427 LKKVQPVDLFPQTHHVETVALLSKLDVDKH 456 >gi|15900900|ref|NP_345504.1| RNA methyltransferase [Streptococcus pneumoniae TIGR4] gi|111658257|ref|ZP_01408949.1| hypothetical protein SpneT_02000571 [Streptococcus pneumoniae TIGR4] gi|50401653|sp|Q97R12|Y1029_STRPN RecName: Full=Uncharacterized RNA methyltransferase SP_1029 gi|14972502|gb|AAK75144.1| RNA methyltransferase, TrmA family [Streptococcus pneumoniae TIGR4] Length = 543 Score = 265 bits (677), Expect = 9e-69, Method: Composition-based stats. Identities = 69/390 (17%), Positives = 152/390 (38%), Gaps = 40/390 (10%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAF-QVPNLQI----FRSEPIHYRMRAEFHIWHDGDDLY 59 L Y +QL K +++ + + ++++ P+ YR +A+ + L Sbjct: 83 LGHLSYPEQLKFKTKQVKDSLYKIAGIADVEVAETLGMEHPVKYRNKAQVPVRRVNGVLE 142 Query: 60 HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIR-----------LEPLLRAKLFQID 108 F + + M ++ F +I+ +++ + +R L+R + + Sbjct: 143 TGFFRKNSHNLMPLEDFFIQDPVIDQVVVALRDLLRRFDLKPYDEKEQSGLIRNLVVRRG 202 Query: 109 YLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR 164 + + Q +VT + L + + + + Q + + + Sbjct: 203 HYSGQIMVVLVTTRPKVFRVDQLIEQVIKQFPEIVSVMQNINDQNTNAIFGKEWRTLYGQ 262 Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNF 223 DY+ +++ ++ +F Q N + + + + + + D++ + Y G G Sbjct: 263 DYITDQMLGND----FQIAGPAFYQVNTEMAEKLYQTAIDFAELKKDDVIIDAYSGIGTI 318 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 L +A+H V VE+ +VE ++ N + N + N V +++ + +E Sbjct: 319 GLSVAKHVKEVYGVELIPEAVENSQKNASLNKITNAHYVCDTAENAMKKWLKE------- 371 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST-THT 340 + I VDPPR GL ++ + I YISCN ++ RD+ + + Sbjct: 372 -----GIQPTVILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMARDIKLYQELGYE 426 Query: 341 IERLALFDQFPYTRHMECGVLLVRKPSGWH 370 ++++ D FP T H+E LL + H Sbjct: 427 LKKVQPVDLFPQTHHVETVALLSKLDVDKH 456 >gi|291542511|emb|CBL15621.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Ruminococcus bromii L2-63] Length = 454 Score = 265 bits (677), Expect = 9e-69, Method: Composition-based stats. Identities = 73/388 (18%), Positives = 135/388 (34%), Gaps = 41/388 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRS-----EPIHYRMRAEFHIWHDGD 56 T YE++ K R+ + + +F+ YR +A++ + D D Sbjct: 82 GCTWRHISYEEECKIKQQRVEDAVTRIGGLDNVVFKPIISSDNITRYRNKAQYPVGLDRD 141 Query: 57 DLYH-IMFDQQTKERMRIDYFMPGSLL-----------INALMIEMMATIRLEPLLRAKL 104 + + + + + I E+ + LR Sbjct: 142 GNVVTGFYSFHSHRIINCTDCILQPEIFARVIEITKDFIAKTNTEIYDETTGKGRLRHIY 201 Query: 105 FQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR 164 +I ++ + V +D L+ L K I + KT + L R Sbjct: 202 IRIGEVSGELMVCYVVNANGLKQEDL---LVKMLKSELPQLKSVI-INSNREKTNVVLGR 257 Query: 165 ----DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCG 219 Y + +T L ++ SF Q N + + LL+LYCG Sbjct: 258 KNRTIYGSDHITDTLCGLQFKISPFSFWQINRKQAEKLYGKAKEYANLKSDEILLDLYCG 317 Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279 G L +A +++ EI + +V+ A N AN + N + + + + +E Sbjct: 318 TGTIGLTMADSCKQLIGAEIVEDAVKDANENAKANGIENARFICGDASAAAFQLEKE--- 374 Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILST 337 + + +DPPR G + V + ++Y+SC+P +L RDL + Sbjct: 375 ---------GLKPDCVILDPPRKGCGEELVKTISRMLPSRVVYVSCDPATLARDLKFFTE 425 Query: 338 -THTIERLALFDQFPYTRHMECGVLLVR 364 +T + + D F T H+E L+ R Sbjct: 426 NGYTPKEITPCDMFSGTSHVESVALIER 453 >gi|238855408|ref|ZP_04645719.1| 23S rRNA-methyltransferase RumA [Lactobacillus jensenii 269-3] gi|260665351|ref|ZP_05866199.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus jensenii SJ-7A-US] gi|282932081|ref|ZP_06337538.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus jensenii 208-1] gi|313473079|ref|ZP_07813563.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus jensenii 1153] gi|238832006|gb|EEQ24332.1| 23S rRNA-methyltransferase RumA [Lactobacillus jensenii 269-3] gi|239528690|gb|EEQ67691.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus jensenii 1153] gi|260560855|gb|EEX26831.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus jensenii SJ-7A-US] gi|281303760|gb|EFA95905.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus jensenii 208-1] Length = 447 Score = 265 bits (677), Expect = 1e-68, Method: Composition-based stats. Identities = 81/382 (21%), Positives = 157/382 (41%), Gaps = 33/382 (8%) Query: 3 GTLLIDQYEQQLAEKVDRLRQMMLAF---QVPNLQIFRSEPIHYRMRAEFHIWHDGDDLY 59 +L +Y++QL K ++ ++ + N + E YR +A+ + L Sbjct: 80 ASLAHIKYDKQLDFKRQQVINLLEKAHLNKKVNATVASPEETGYRNKAQVPVRKVKGQLE 139 Query: 60 HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-------LRAKLFQIDYLTS 112 F + + + + ++ F I+ +++ +R + + ++ ++ S Sbjct: 140 IGFFRKHSHDLVPMENFFTTDPEIDRVLVATRDILRKNHIPAYDEVKNKGEVRYLEVRRS 199 Query: 113 QS-DQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR-DYV--- 167 ++ + +V L+ + A + + + L KT + L + DY+ Sbjct: 200 KANGEMMVILVCLHKDFPQLAKVADEISQI--SDVVSVILNHNPKKTNVILGKHDYLLSG 257 Query: 168 DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLV 226 + ++ + ++ SF Q N+ + + D +++ Y G G L Sbjct: 258 NPQIEDKIGDVCFKISAQSFFQINSLQTPRLYNLAIEKAGLTSDDTVIDAYSGIGTIGLS 317 Query: 227 LARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDID 286 +A+H V VEI KP+V+ A+ N N + N V ++E + E Sbjct: 318 VAKHVKSVRGVEIVKPAVQDAKENALLNGIENADYVCGKAEELMPSWVSE---------- 367 Query: 287 IHSYRFKTIFVDPPRSGLDDATVGM-VQAYP-HILYISCNPDSLCRDLSILST-THTIER 343 + IFVDPPR GL + V+ P I+YISCNP ++ RDL++ + E Sbjct: 368 --GMKADVIFVDPPRKGLTLEFIEASVKTNPQKIVYISCNPATMVRDLTMYQDLGYDFEE 425 Query: 344 LALFDQFPYTRHMECGVLLVRK 365 + D FP T H+EC +L +K Sbjct: 426 ITPVDMFPQTPHVECVTVLEKK 447 >gi|307706544|ref|ZP_07643351.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus mitis SK321] gi|307617999|gb|EFN97159.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus mitis SK321] Length = 451 Score = 265 bits (677), Expect = 1e-68, Method: Composition-based stats. Identities = 70/379 (18%), Positives = 154/379 (40%), Gaps = 40/379 (10%) Query: 10 YEQQLAEKVDRLRQMMLAF-QVPNLQI----FRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 Y +QL K +++ + + ++++ P+ YR +A+ + L F Sbjct: 88 YPEQLKFKTKQVKDSLYKIAGIADVEVAETLGMENPVKYRNKAQVPVRRVNGILETGFFR 147 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIR-----------LEPLLRAKLFQIDYLTSQ 113 + + + M ++ F +I+ +++ + +R L+R + + + + Q Sbjct: 148 KNSHDLMPLEDFFIQDPVIDEVVVVLRDLLRRYDLKPYDEKEQAGLIRNLVVRRGHYSGQ 207 Query: 114 SDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDE 169 +VT + L + + + + Q + + +DY+ + Sbjct: 208 IMVILVTTRPKVFRVEQLIEQLIKQFPEIVSVMQNINDQNTNAIFGKEWRTLYGQDYITD 267 Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLA 228 ++ Y+ +F Q N + + + + + + D+ ++ Y G G L +A Sbjct: 268 QMLGND----YQIAGPAFYQVNTEMAEKLYQTAIDFAELKEDDVVIDAYSGIGTIGLSVA 323 Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288 +H V VE+ +VE ++ N N+++N V +++ + +E Sbjct: 324 KHVKEVYGVEVIPEAVENSKKNAQLNNISNAHYVCDTAENAMKNWLKE------------ 371 Query: 289 SYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST-THTIERLA 345 + I VDPPR GL ++ + I YISCN ++ RD+ + + ++++ Sbjct: 372 GIQPTVILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMARDIKLYQELGYDLKKVQ 431 Query: 346 LFDQFPYTRHMECGVLLVR 364 D FP T H+EC LLV+ Sbjct: 432 PVDLFPQTHHVECVALLVK 450 >gi|225386438|ref|ZP_03756202.1| hypothetical protein CLOSTASPAR_00185 [Clostridium asparagiforme DSM 15981] gi|225047456|gb|EEG57702.1| hypothetical protein CLOSTASPAR_00185 [Clostridium asparagiforme DSM 15981] Length = 506 Score = 265 bits (677), Expect = 1e-68, Method: Composition-based stats. Identities = 92/426 (21%), Positives = 151/426 (35%), Gaps = 76/426 (17%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-------------------------------- 29 L + YE QL K ++ + Sbjct: 98 GCQLQMMDYEAQLRFKERKIYNNLKRIGGMENLRLPGEECGSEDEGAGTGERAGADGRKI 157 Query: 30 -VPNLQIFRSEPIHYRMRAEFHIWH-DGDDLYHIMFDQQTKERMRIDYFMPG---SLLIN 84 + EP YR +A+F + + +T + + + G + I Sbjct: 158 VRMEPIMGMEEPWRYRNKAQFPFGMSKDGRVITGFYAGRTHSIIENEDCLLGVEENREIL 217 Query: 85 ALMIEMMATIRLEP--------LLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAI 136 ++ E M ++P L+R L + + T + +V D+ E Sbjct: 218 RIVREFMEEFGVKPYDEEGHRGLVRHCLIRKGFATGEIMVCLVVNGRKLPKDEVLVE--- 274 Query: 137 RLRDALHARKYQIQLIGRANKTKICLDRD----YVDERLTVAGRTLIYRQIENSFTQPNA 192 RLR I L KT + L + + +T + Y+ SF Q N Sbjct: 275 RLRQVDGM--TSISLCVNTEKTNVILGDEVVNLWGPGYITDYIGDVKYQISPLSFYQVNP 332 Query: 193 GINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN 250 V + L G+ G+ + +LYCG G SL LA+ +V VEI ++E AR N Sbjct: 333 AQTVKLYGTALE-YAGLTGEETVWDLYCGIGTISLFLAQKAKKVYGVEIVPQAIEDARRN 391 Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310 N + NV+ ++E REF I VDPPR G D+ + Sbjct: 392 AKINGIENVEFFVGKAEEVLP-----REFEE------KQIYADVIVVDPPRKGCDEVCLD 440 Query: 311 MV--QAYPHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVL-----L 362 + ++Y+SC+ +L RD+ L +ER+ D F + H+E ++ + Sbjct: 441 TIVKMGPKRVVYVSCDSATLGRDVKYLGERGFVVERVRGCDMFGGSGHVETVIMMQNCGM 500 Query: 363 VRKPSG 368 VRK G Sbjct: 501 VRKSRG 506 >gi|256752408|ref|ZP_05493268.1| RNA methyltransferase, TrmA family [Thermoanaerobacter ethanolicus CCSD1] gi|256748743|gb|EEU61787.1| RNA methyltransferase, TrmA family [Thermoanaerobacter ethanolicus CCSD1] Length = 452 Score = 264 bits (676), Expect = 1e-68, Method: Composition-based stats. Identities = 82/391 (20%), Positives = 161/391 (41%), Gaps = 47/391 (12%) Query: 2 SGTLLID-QYEQQLAEKVDRLRQMMLAFQVPNLQ---IFRSEPIH-YRMRAEFHIWHDGD 56 G + + Y QL K D +++++ + + + I +S H YR + E+ D + Sbjct: 78 GGCIYQNVDYSDQLKIKEDIVKKLLEKEGIRDYEFLRIVKSPKEHGYRNKMEYTFGKDKE 137 Query: 57 DLYHIMFDQQT---------KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQ- 106 + ++ K + D F+ L I+ + + L Sbjct: 138 GNEVLGLHRKGRFYEVVMTDKCNIVDDDFLKALNLTFDYAIKKGLPFYDKKTHKGFLRHL 197 Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWRECAI---------RLRDALHARKYQIQLIGRANK 157 + S++ + ++ ++ L+ ++E RL LH + K Sbjct: 198 VVRKASKAGEILLNIVTTTQLEHDFKELIEIYKNVDFESRLVGVLHTQNDSWSDAVVCEK 257 Query: 158 TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLEL 216 + +DY+ E L L ++ SF Q N+ + E V + + +L Sbjct: 258 LNVLYGKDYLIEELL----GLKFKISAFSFFQTNSYGAEKLYETVREFAGDVSDKIVFDL 313 Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276 Y G G +++A +V+ +E+ + +V +AR N N + N + + Sbjct: 314 YSGTGTIGIIMAPMAKKVIGIELVEEAVMSARENAELNGLKNCTFIAGDVSK-------- 365 Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCRDLSI 334 +LK+I + VDPPRSG++ + +++ P ++Y+SCNP+SL RDL I Sbjct: 366 ----KLKEI---KEMPDVVIVDPPRSGINPKALEDIIKFNPQKVVYVSCNPESLARDLKI 418 Query: 335 LST-THTIERLALFDQFPYTRHMECGVLLVR 364 S + ++++ D FP+T H+EC L+ + Sbjct: 419 FSEGGYKVDKVKCVDMFPHTYHVECVTLMSK 449 >gi|307703903|ref|ZP_07640844.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus oralis ATCC 35037] gi|307622738|gb|EFO01734.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus oralis ATCC 35037] Length = 379 Score = 264 bits (676), Expect = 1e-68, Method: Composition-based stats. Identities = 69/379 (18%), Positives = 151/379 (39%), Gaps = 40/379 (10%) Query: 10 YEQQLAEKVDRLRQMMLAF-QVPNLQI----FRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 Y +QL K +++ + + ++++ P+ YR +A+ + L F Sbjct: 16 YPEQLKFKTKQVKDSLYKIAGIRDVEVAETLGMEHPVKYRNKAQVPVRRVNGVLETGFFR 75 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIR-----------LEPLLRAKLFQIDYLTSQ 113 + + + M ++ F +I+ +++ + +R L+R + + + + Q Sbjct: 76 KNSHDLMPLEDFFIQDPMIDEVVVALRDLLRRYDLKPYDEKEQSGLIRNLVVRRGHYSGQ 135 Query: 114 SDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDE 169 +VT + L + + + + Q + +DY+ + Sbjct: 136 IMVILVTTRPKVFRVDQLIEQLIKQFPEIVSVVQNINDQNTNAIFGKDWRTLYGQDYITD 195 Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLA 228 ++ ++ +F Q N + + + + + D+ ++ Y G G L +A Sbjct: 196 QMLGND----FQISGPAFYQVNTEMAEKLYQTAIDFAELKGDDVVIDAYSGIGTIGLSVA 251 Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288 +H V VE+ +VE ++ N + N + N V +++ + +E Sbjct: 252 KHVKEVYGVEVIPEAVENSQKNASINGITNAHYVCDTAENAMKNWLKE------------ 299 Query: 289 SYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST-THTIERLA 345 + I VDPPR GL ++ + I YISCN ++ RD+ + + ++++ Sbjct: 300 GIQPTAILVDPPRKGLTESFIKAGSQTGADRIAYISCNVATMARDIKLYQELGYELKKIQ 359 Query: 346 LFDQFPYTRHMECGVLLVR 364 D FP T H+EC LLV+ Sbjct: 360 PVDLFPQTHHVECVALLVK 378 >gi|227514178|ref|ZP_03944227.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus fermentum ATCC 14931] gi|227087458|gb|EEI22770.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus fermentum ATCC 14931] Length = 474 Score = 264 bits (676), Expect = 1e-68, Method: Composition-based stats. Identities = 81/379 (21%), Positives = 138/379 (36%), Gaps = 41/379 (10%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNL-------QIFRSEPIHYRMRAEFHIWHDGDDLYHIM 62 Y++QLA K + + + F+ + P YR +A+F + + + Sbjct: 108 YDKQLAFKKQVVLEALAKFKPLGYRHYWVKDTLAAPHPYGYRNKAQFQVRMQDGHVVAGL 167 Query: 63 FDQQTKERMRIDYFMPG-----------SLLINALMIEMMATIRLEPLLRAKLFQIDYLT 111 + + + + LI L I + +++ + T Sbjct: 168 YQADSHTVVDMQTCAVQMPGTMKVINTLVKLIEELAIPVYNEANQSGIIKTLAVRESLAT 227 Query: 112 SQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYV 167 Q AI+T LI L A + + + + ++T + +DY+ Sbjct: 228 GQIQVAIITNTAKLIKKHALLVAIEDQLPEVTSVVQNVNPGDTPLVWGDETTLLYGQDYI 287 Query: 168 DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLV 226 E L L +R SF Q N + E A + D L++ Y G G L Sbjct: 288 TESLM----GLDFRLSARSFLQLNPEQTEVLYEEAAKALDLSKDDTLIDAYAGIGTIGLS 343 Query: 227 LARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDID 286 LA +V+ +E +V+ A N N V N + ++E R Sbjct: 344 LANRVKQVIGMETIADAVQDANNNATLNGVTNARYEVGPAEELLPKWRS----------- 392 Query: 287 IHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILSTTHTIERL 344 F + VDPPR+GLD+A + + + Y+SCN +L R+L+ L T+ + + Sbjct: 393 -QGQHFDALVVDPPRTGLDNALIDTILQEKPAKFAYVSCNMATLARNLARLVPTYRVAYI 451 Query: 345 ALFDQFPYTRHMECGVLLV 363 D P T E V LV Sbjct: 452 QPVDMLPQTPRCEAVVKLV 470 >gi|312623225|ref|YP_004024838.1| RNA methyltransferase, TrmA family [Caldicellulosiruptor kronotskyensis 2002] gi|312203692|gb|ADQ47019.1| RNA methyltransferase, TrmA family [Caldicellulosiruptor kronotskyensis 2002] Length = 451 Score = 264 bits (676), Expect = 1e-68, Method: Composition-based stats. Identities = 73/388 (18%), Positives = 153/388 (39%), Gaps = 38/388 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWHDGDD 57 L+ +Y+ QL+ K + + +I P YR + + D Sbjct: 80 GCHLMHAKYQHQLSLKKLLVEDAFRRIGKLSPKINDVIGMENPFRYRNKTALPVGGDYKK 139 Query: 58 LYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLFQ 106 + + T + + IDY + LI IE+ + + +LR + + Sbjct: 140 PQIGFYKKMTHDIVDIDYCLIQHEFCDNVIKGMKDLIRKHKIEVYDEKKHKGVLRHIVVR 199 Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY 166 + ++ ++ L+ + + + + D K + I + D Sbjct: 200 NSFA---FNEMMLILVCTK-VPENLEAIKNDILDKFPEIKSFFVNLNPKRTNVILGEEDI 255 Query: 167 VDE---RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGN 222 + + L + SF Q N+ + V+ + I+ +++ ++Y G G Sbjct: 256 LIWGNSTIKDKIGNLTFEISPKSFFQVNSVQTEVLYRQVVKYLRNIEAEVVFDIYSGIGT 315 Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282 S+ +AR +V A+E+ + +VE A+ + N ++N++ + S++ + Sbjct: 316 ISMFVARFCKKVYAIELVRDAVEDAKKSSKNNSISNIEFICGSAE------------IEI 363 Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILS-TTH 339 + + + +DPPRSG + + + + +I+Y+SCNP +L RD +IL + Sbjct: 364 PKLLKSGIIPQAVILDPPRSGCEKQLLESLIEHKIQNIIYVSCNPSTLARDANILCSNGY 423 Query: 340 TIERLALFDQFPYTRHMECGVLLVRKPS 367 + + D FP T H+EC L + S Sbjct: 424 EVVEVQPVDMFPQTFHVECVTLFKKCNS 451 >gi|312794361|ref|YP_004027284.1| RNA methyltransferase, TrmA family [Caldicellulosiruptor kristjanssonii 177R1B] gi|312181501|gb|ADQ41671.1| RNA methyltransferase, TrmA family [Caldicellulosiruptor kristjanssonii 177R1B] Length = 451 Score = 264 bits (676), Expect = 1e-68, Method: Composition-based stats. Identities = 79/386 (20%), Positives = 151/386 (39%), Gaps = 38/386 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWHDGDD 57 L+ +Y+ QL K + + +I P YR + + D Sbjct: 80 GCHLMHAKYQHQLKLKKLLVEDAFRRIGKLSPKINDVIGMENPFRYRNKTALPVGGDYVK 139 Query: 58 LYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLFQ 106 + + T + + IDY + LI IE+ + + +LR + + Sbjct: 140 PQIGFYRKMTHDIVPIDYCLIQHEFCDDVIKGMKELIKKHKIEVYDERKHQGVLRHIVVR 199 Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY 166 + D+ ++ L+ + + + + D K + I + D Sbjct: 200 NSFA---FDEMMLILVCTK-VPENLEVIKKDILDKFPKIKSFFVNLNPKRTNVILGEEDI 255 Query: 167 VDE---RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGN 222 + + L + SF Q N+ + V+ K I + + ++Y G G Sbjct: 256 LIWGSSTIKDKIGNLTFEISPKSFFQVNSLQTEVLYSQVVKYLKDIDAEIVFDVYSGIGT 315 Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282 S+ +A +V A+EI + +VE A+ + N+++N++ + S++ E RL Sbjct: 316 ISMFVAPFCKKVYAIEIVEDAVEDAKKSSKNNNISNIEFICGSAE---------IEIPRL 366 Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILS-TTH 339 I + + +DPPR G + + + P+I+Y+SCNP +L RD +IL + Sbjct: 367 MKSGII---PQAVILDPPRRGCEKELLESLIEHKIPNIIYVSCNPSTLARDSNILCSNGY 423 Query: 340 TIERLALFDQFPYTRHMECGVLLVRK 365 I + D FP T H+EC L ++ Sbjct: 424 EILEVQPVDMFPQTFHVECVALFKKR 449 >gi|260662594|ref|ZP_05863489.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus fermentum 28-3-CHN] gi|260553285|gb|EEX26228.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus fermentum 28-3-CHN] Length = 474 Score = 264 bits (676), Expect = 1e-68, Method: Composition-based stats. Identities = 81/379 (21%), Positives = 138/379 (36%), Gaps = 41/379 (10%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNL-------QIFRSEPIHYRMRAEFHIWHDGDDLYHIM 62 Y++QLA K + + + F+ + P YR +A+F + + + Sbjct: 108 YDKQLAFKKQVVLEALAKFKPLGYRHYWVKDTLAAPHPYGYRNKAQFQVRMQDGHVVAGL 167 Query: 63 FDQQTKERMRIDYFMPG-----------SLLINALMIEMMATIRLEPLLRAKLFQIDYLT 111 + + + + LI L I + +++ + T Sbjct: 168 YQANSHTVVDMQTCAVQMPGTMKVINTLVKLIEELAIPVYNEANQSGIIKTLAVRESLAT 227 Query: 112 SQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYV 167 Q AI+T LI L A + + + + ++T + +DY+ Sbjct: 228 GQIQVAIITNTAKLIKKHALLVAIEDQLPEVTSVVQNVNPGDTPLVWGDETTLLYGQDYI 287 Query: 168 DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLV 226 E L L +R SF Q N + E A + D L++ Y G G L Sbjct: 288 TESLM----GLDFRLSARSFLQLNPEQTEVLYEEAAKALDLSKDDTLIDAYAGIGTIGLS 343 Query: 227 LARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDID 286 LA +V+ +E +V+ A N N V N + ++E R Sbjct: 344 LANRVKQVIGMETIADAVQDANNNATLNGVTNARYEVGPAEELLPKWRS----------- 392 Query: 287 IHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILSTTHTIERL 344 F + VDPPR+GLD+A + + + Y+SCN +L R+L+ L T+ + + Sbjct: 393 -QGQHFDALVVDPPRTGLDNALIDTILQEKPAKFAYVSCNMATLARNLARLVPTYRVAYI 451 Query: 345 ALFDQFPYTRHMECGVLLV 363 D P T E V LV Sbjct: 452 QPVDMLPQTPRCEAVVKLV 470 >gi|325679453|ref|ZP_08159035.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Ruminococcus albus 8] gi|324108852|gb|EGC03086.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Ruminococcus albus 8] Length = 397 Score = 264 bits (675), Expect = 1e-68, Method: Composition-based stats. Identities = 80/386 (20%), Positives = 144/386 (37%), Gaps = 42/386 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDG-DDLYH 60 G L + Y+ QL K + +M+ F N + +P +YR + + D + Sbjct: 23 GGCQLDEPYKDQLERKQQKADRMLSKFAPVNRILPMEKPYNYRCKVQNIYGLDRSKRIIS 82 Query: 61 IMFDQQTKERMRIDYFMPGSL---LINALMIEMMATIRLEP--------LLRAKLFQIDY 109 ++ ++ + +D I + ++M +R+ P +LR L + Sbjct: 83 GVYQSSGQKIVAVDDCFLEDERAAPIVRSVKKLMKDMRIPPYDIRSGRGILRHTLIRTSR 142 Query: 110 LTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGR-------ANKTKICL 162 T Q +VT + A +R A +Q I + + Sbjct: 143 STGQVMLVLVTAG---AMLPAKNNLVKAMRAAHPEITTIVQNICPDGMPLTLGERDIVLF 199 Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNG 221 + Y+++ L +R SF Q N + + A +G +++ YCG G Sbjct: 200 GKGYIEDELC----GCRFRISPASFYQVNPLQTEKLYSCAVEAAGISEGVRVIDAYCGTG 255 Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281 ++ A++ V VE+ K + A N N + N+K + +F QAM Sbjct: 256 TIGIICAKNGAEVTGVELNKSACRDAHKNAELNGLENIKFCNDDAGKFMQAMAS------ 309 Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STT 338 + +DPPR+G +G A I+Y+SC ++L RDL Sbjct: 310 ------KGEGCDVLIMDPPRAGASREFIGCAGRLAPQKIVYVSCKIETLERDLKAFRREG 363 Query: 339 HTIERLALFDQFPYTRHMECGVLLVR 364 + + + D FP+T +E LL R Sbjct: 364 YKVTYIQPVDMFPHTMGIETVCLLER 389 >gi|300361143|ref|ZP_07057320.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus gasseri JV-V03] gi|300353762|gb|EFJ69633.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus gasseri JV-V03] Length = 448 Score = 264 bits (675), Expect = 1e-68, Method: Composition-based stats. Identities = 77/383 (20%), Positives = 157/383 (40%), Gaps = 34/383 (8%) Query: 3 GTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWHDGDDL 58 +L +Y++QL K +++ ++ + +++ E YR +A+ + +L Sbjct: 80 ASLAHIKYDKQLEFKRNQVVNLLHKADLDKIKVSQTLPSPEETGYRNKAQVPVREVHGEL 139 Query: 59 YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-------LRAKLFQIDYLT 111 F + + + + + F I+ ++I++ +R + + ++ +D Sbjct: 140 DIGFFRKHSHDLVPLTNFFTTDPEIDRVLIKVRDILRKNHVPAYDEIHNKGEVRYLDVRR 199 Query: 112 SQ-SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR-DYV-- 167 S+ + + +V L+ ++ + + + L KT + L + DY+ Sbjct: 200 SKATGEIMVILVCLHKDFPQLKKVTKEISEI--EGVTSVVLNHNPKKTNVILGKKDYLLW 257 Query: 168 -DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSL 225 + ++T + ++ SF Q N+ + + + D+ ++ Y G G L Sbjct: 258 GEPQITDKIGDVSFKISPQSFFQINSLQTPRLYDLAIQKADLKPDDVVIDAYSGIGTIGL 317 Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285 +A+H V +E+ KP+V+ A N N + N + V ++E +E Sbjct: 318 SVAKHVKAVRGMEVIKPAVDDANANAKLNGIMNAEYVVGKAEEVMPRWAKE--------- 368 Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STTHTIE 342 + IFVDPPR GL V I+YISCNP ++ RDL + + Sbjct: 369 ---GLKTDVIFVDPPRKGLTPEFVDAAVETDPKKIVYISCNPATMVRDLQLFREQGYDFN 425 Query: 343 RLALFDQFPYTRHMECGVLLVRK 365 + D FP T H+E +L +K Sbjct: 426 EIDPVDMFPQTPHVEAVTVLEKK 448 >gi|77411137|ref|ZP_00787490.1| RNA methyltransferase, TrmA family [Streptococcus agalactiae CJB111] gi|77162860|gb|EAO73818.1| RNA methyltransferase, TrmA family [Streptococcus agalactiae CJB111] Length = 451 Score = 264 bits (675), Expect = 1e-68, Method: Composition-based stats. Identities = 78/379 (20%), Positives = 143/379 (37%), Gaps = 40/379 (10%) Query: 10 YEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 YEQQL K ++ + + + + P+ YR +A+ + L F Sbjct: 88 YEQQLLFKQKQVADNLYKIAHISDVLVEPTLGMTIPLAYRNKAQVPVRRVDGQLETGFFR 147 Query: 65 QQTKERMRIDYFMPGSLLINAL-----------MIEMMATIRLEPLLRAKLFQIDYLTSQ 113 + + + I+ ++ I+AL ++ + L+R + + + T Q Sbjct: 148 KNSHTLVSIEDYLIQEKEIDALINFTRDLLRKFDVKPYDEEQQSGLIRNLVVRRGHYTGQ 207 Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD----YVDE 169 +VT D E +L A + +Q I + + ++ Y + Sbjct: 208 LMLVLVTTRPKIFRIDQMIE---KLVSAFPSVVSIMQNIND-RNSNVIFGKEFRTLYGSD 263 Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLA 228 + Y SF Q N + + + + + D +++ Y G G L +A Sbjct: 264 TIEDQMLGNTYAISAQSFYQVNTEMAEKLYQKAIDFSDLNSEDIVIDAYSGIGTIGLSVA 323 Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288 + V VE+ + +V A+ N N + N V S++ +E Sbjct: 324 KQVKHVYGVEVVEKAVSDAKENATRNGITNSTYVADSAENAMAKWLKE------------ 371 Query: 289 SYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILST-THTIERLA 345 + I VDPPR GL ++ V I YISCN ++ RD+ + + + ++ Sbjct: 372 GIKPTVIMVDPPRKGLTESFVYSAAQTKADKITYISCNSATMARDIKLFEELGYHLVKIQ 431 Query: 346 LFDQFPYTRHMECGVLLVR 364 D FP T H+EC LLV+ Sbjct: 432 PVDLFPMTHHVECVALLVK 450 >gi|171779969|ref|ZP_02920873.1| hypothetical protein STRINF_01756 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171281317|gb|EDT46752.1| hypothetical protein STRINF_01756 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 454 Score = 264 bits (675), Expect = 1e-68, Method: Composition-based stats. Identities = 76/379 (20%), Positives = 148/379 (39%), Gaps = 40/379 (10%) Query: 10 YEQQLAEKVDRLRQMMLAF-QVPNLQI----FRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 Y +QL K ++ + + ++++ P YR +A+ + L F Sbjct: 88 YAEQLKFKRKQVADNLYKTAGISDVEVLETLGMEHPYAYRNKAQVPVRRVNGQLETGFFR 147 Query: 65 QQTKERMRIDYFMPGSLLINAL---MIEMMATIRLEP--------LLRAKLFQIDYLTSQ 113 + + + M I F + I+ L +++ L+P L+R + + + + Sbjct: 148 KHSHDLMPISDFYIQNKEIDRLINFTRDLLRRFDLKPYDEKEQTGLIRNLVVRRGHYSG- 206 Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD----YVDE 169 + ++ + R + ++ K +Q I N T D Y + Sbjct: 207 --EMMLVFVTTRPKIFRIEQIIEKIVAEFPVVKSVVQNINDKN-TNAIFGNDFRTLYGKD 263 Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLA 228 + + Y SF Q N + + + + + D +++ Y G G L A Sbjct: 264 TIVDSMLGNQYEISARSFYQVNTEMAEKLYQTAIDFSDLTADDTVIDAYSGIGTIGLSFA 323 Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288 ++ V VE+ + +V+ A+ N A N + N V S++ ++ Sbjct: 324 KNVKAVYGVEVIEEAVKDAKRNAALNGITNAHYVADSAEHAMATWSKD------------ 371 Query: 289 SYRFKTIFVDPPRSGLDDATVGM-VQAYP-HILYISCNPDSLCRDLSILST-THTIERLA 345 + I VDPPR GL + + V P + YISCNP ++ RD+ + + ++++ Sbjct: 372 GIKPSVILVDPPRKGLTENFIKASVAMQPEKVTYISCNPATMARDIKLYQELGYKLQKVQ 431 Query: 346 LFDQFPYTRHMECGVLLVR 364 D FP T H+E VL+ R Sbjct: 432 PVDLFPNTHHVETVVLMSR 450 >gi|22536806|ref|NP_687657.1| RNA methyltransferase [Streptococcus agalactiae 2603V/R] gi|25010677|ref|NP_735072.1| hypothetical protein gbs0613 [Streptococcus agalactiae NEM316] gi|76788448|ref|YP_329346.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus agalactiae A909] gi|76799166|ref|ZP_00781348.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus agalactiae 18RS21] gi|77407748|ref|ZP_00784502.1| RNA methyltransferase, TrmA family [Streptococcus agalactiae COH1] gi|50401576|sp|Q8E0T7|Y633_STRA5 RecName: Full=Uncharacterized RNA methyltransferase SAG0633 gi|50401578|sp|Q8E6F5|Y613_STRA3 RecName: Full=Uncharacterized RNA methyltransferase gbs0613 gi|22533652|gb|AAM99529.1|AE014220_1 RNA methyltransferase, TrmA family [Streptococcus agalactiae 2603V/R] gi|23095031|emb|CAD46257.1| Unknown [Streptococcus agalactiae NEM316] gi|76563505|gb|ABA46089.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus agalactiae A909] gi|76585475|gb|EAO62051.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus agalactiae 18RS21] gi|77173614|gb|EAO76729.1| RNA methyltransferase, TrmA family [Streptococcus agalactiae COH1] Length = 451 Score = 264 bits (675), Expect = 1e-68, Method: Composition-based stats. Identities = 78/379 (20%), Positives = 143/379 (37%), Gaps = 40/379 (10%) Query: 10 YEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 YEQQL K ++ + + + + P+ YR +A+ + L F Sbjct: 88 YEQQLLFKQKQVADNLYKIAHISDVLVEPTLGMTIPLAYRNKAQVPVRRVDGQLETGFFR 147 Query: 65 QQTKERMRIDYFMPGSLLINAL-----------MIEMMATIRLEPLLRAKLFQIDYLTSQ 113 + + + I+ ++ I+AL ++ + L+R + + + T Q Sbjct: 148 KNSHTLVSIEDYLIQEKEIDALINFTRDLLRKFDVKPYDEEQQSGLIRNLVVRRGHYTGQ 207 Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD----YVDE 169 +VT D E +L A + +Q I + + ++ Y + Sbjct: 208 LMLVLVTTRPKIFRIDQMIE---KLVSAFPSVVSIMQNIND-RNSNVIFGKEFRTLYGSD 263 Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLA 228 + Y SF Q N + + + + + D +++ Y G G L +A Sbjct: 264 TIEDQMLGNTYAISAQSFYQVNTEMAEKLYQKAIDFSDLNSEDIVIDAYSGIGTIGLSVA 323 Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288 + V VE+ + +V A+ N N + N V S++ +E Sbjct: 324 KQVKHVYGVEVVEKAVSDAKENATRNGITNSTYVADSAENAMAKWLKE------------ 371 Query: 289 SYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILST-THTIERLA 345 + I VDPPR GL ++ V I YISCN ++ RD+ + + + ++ Sbjct: 372 GIKPTVIMVDPPRKGLTESFVYSAAQTKADKITYISCNSATMARDIKLFEELGYHLVKIQ 431 Query: 346 LFDQFPYTRHMECGVLLVR 364 D FP T H+EC LLV+ Sbjct: 432 PVDLFPMTHHVECVALLVK 450 >gi|116491644|ref|YP_811188.1| tRNA (uracil-5-)-methyltransferase related enzyme [Oenococcus oeni PSU-1] gi|290891253|ref|ZP_06554315.1| hypothetical protein AWRIB429_1705 [Oenococcus oeni AWRIB429] gi|116092369|gb|ABJ57523.1| tRNA (uracil-5-)-methyltransferase related enzyme [Oenococcus oeni PSU-1] gi|290479217|gb|EFD87879.1| hypothetical protein AWRIB429_1705 [Oenococcus oeni AWRIB429] Length = 458 Score = 264 bits (675), Expect = 2e-68, Method: Composition-based stats. Identities = 83/385 (21%), Positives = 149/385 (38%), Gaps = 40/385 (10%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWHDGDDLYH 60 L+ Y QL K ++RQ+ + +L+I P HYR + + L Sbjct: 90 LVNLSYPAQLEFKRKQIRQLFHKVGIDDLEILPTLGMKNPTHYRNKTVVPVKFQAGKLVT 149 Query: 61 IMFDQQTKERMRIDYFMPGSLLI-----------NALMIEMMATIRLEPLLRAKLFQIDY 109 + + + + + I+ + I N I I E ++R + + Y Sbjct: 150 GFYRRGSHKLVPIEDYYLNDPKIDVVVGIARDVLNDFHISAYNEISREGIVRYLMVRHGY 209 Query: 110 LTSQSDQAIVTLIYHRLLD-DAWRECAIRLRD---ALHARKYQIQLIGRANKTKICLDRD 165 + Q+ A+V H + + +E R+ D L + + ++ + Sbjct: 210 HSGQTMLAVVATKKHLPHEKEIIKEINQRIPDLTSFLLNYNPKQTNVQLGLDNRVLSGQQ 269 Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFS 224 + + L L + NSF Q N + +++ Y G G Sbjct: 270 VIHDTLL----GLDFEIGINSFYQVNPQTTAVLYTKAAELAGLKSNQLVIDAYSGIGTIG 325 Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284 L +AR +V+ VE+ P+VE A+ N+ AN + N + + + E +F + D Sbjct: 326 LSIARQVRKVIGVEVVVPAVEDAKKNMLANRIENAEYIAADAAE---------QFIKWAD 376 Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STTHTI 341 + +FVDPPR GL + + A +YISCNP +L RD ++ + I Sbjct: 377 ---AGVKPDVVFVDPPRKGLTSDLIQSLGVMAPLKFVYISCNPATLARDAVLIKEQGYRI 433 Query: 342 ERLA-LFDQFPYTRHMECGVLLVRK 365 + DQFP T H+E + ++ Sbjct: 434 SKAVLPIDQFPQTMHVESITVFEKE 458 >gi|312128413|ref|YP_003993287.1| RNA methyltransferase, TrmA family [Caldicellulosiruptor hydrothermalis 108] gi|311778432|gb|ADQ07918.1| RNA methyltransferase, TrmA family [Caldicellulosiruptor hydrothermalis 108] Length = 451 Score = 264 bits (675), Expect = 2e-68, Method: Composition-based stats. Identities = 74/385 (19%), Positives = 152/385 (39%), Gaps = 38/385 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWHDGDD 57 L+ +Y+ QL+ K + + +I +P YR + + D Sbjct: 80 GCHLMHAKYQHQLSLKKLLVEDAFRRIGKLSPKINDVIGMEKPFRYRNKTALPVGGDYKK 139 Query: 58 LYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLFQ 106 + + T + + IDY + +I IE+ + + +LR + + Sbjct: 140 PQIGFYKKMTHDIVDIDYCLIQHEFCDDVIKGMKEMIKKHKIEVYDERKHQGVLRHIVVR 199 Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY 166 + D+ ++ L+ + + + + D K + I D D Sbjct: 200 NSFA---FDEMMLILVCAK-VPENLEAIKKDILDKFPKIKSLYLNLNPKRTNVILGDEDI 255 Query: 167 VDE---RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGN 222 + + L + SF Q N+ + V+ + I+ +++ ++Y G G Sbjct: 256 LIWGSSTIKDKIGNLTFEISPKSFFQVNSVQTEVLYSQVVKYLRNIEAEVVFDIYSGIGT 315 Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282 S+ +A +V A+EI + +VE A+ + N ++N++ + ++ + Sbjct: 316 ISMFIAPFCKKVYAIEIVEDAVEDAKKSSKNNSISNIEFICGCAE------------IEI 363 Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSIL-STTH 339 + + + +DPPRSG + + + + +I+Y+SCNP +L RD +IL S + Sbjct: 364 PKLLKSGIIPQAVILDPPRSGCEKELLESLIEHKISNIIYVSCNPSTLARDANILYSGGY 423 Query: 340 TIERLALFDQFPYTRHMECGVLLVR 364 I + D FP T H+EC L + Sbjct: 424 EILEVQPVDMFPQTFHVECVALFKK 448 >gi|307704726|ref|ZP_07641623.1| 23S rRNA uracil-5-methyltransferase [Streptococcus mitis SK597] gi|307621705|gb|EFO00745.1| 23S rRNA uracil-5-methyltransferase [Streptococcus mitis SK597] Length = 452 Score = 264 bits (675), Expect = 2e-68, Method: Composition-based stats. Identities = 71/386 (18%), Positives = 155/386 (40%), Gaps = 40/386 (10%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAF-QVPNLQI----FRSEPIHYRMRAEFHIWHDGDDLY 59 L Y +QL K +++ + + ++++ P+ YR +A+ + L Sbjct: 83 LGHLSYPEQLKFKTKQVKDSLYKIAGIADVEVSETLGMENPVKYRNKAQVPVRRVNGVLE 142 Query: 60 HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIR-----------LEPLLRAKLFQID 108 F + + + M ++ F +I+ +++ + +R L+R + + Sbjct: 143 TGFFRKNSHDLMPLEDFFIQDPVIDEVVVGLRDLLRRYDLKPYDEKEQAGLIRNLVVRRG 202 Query: 109 YLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR 164 + + Q +VT + L + + + + Q + + R Sbjct: 203 HYSGQIMVILVTTRPKIFRVDQLIEQLIKQFPDITSVMQNINDQNTNSIFGKEWRTLYGR 262 Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNF 223 D++ +++ Y+ +F Q N G+ + + + + D+ ++ Y G G Sbjct: 263 DFITDQMLGND----YQIAGPAFYQVNTGMAEKLYQTAIDFAALKEDDVVIDAYSGIGTI 318 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 L +A+H V VE+ +VE ++ N NH++N V +++ + ++ Sbjct: 319 GLSVAKHVKEVYGVEVIPEAVENSKKNAQLNHISNAHYVCDTAENAMKNWLKD------- 371 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST-THT 340 + I VDPPR GL ++ + I YISCN ++ RD+ + + Sbjct: 372 -----GIQPSLILVDPPRKGLTESFIKASSQTGADRIAYISCNVATMARDIKLYRELGYE 426 Query: 341 IERLALFDQFPYTRHMECGVLLVRKP 366 ++++ D FP T H+EC LL ++ Sbjct: 427 LKKVQPVDLFPQTHHVECVSLLEKRN 452 >gi|149006286|ref|ZP_01829998.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae SP18-BS74] gi|307127423|ref|YP_003879454.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae 670-6B] gi|147762063|gb|EDK69025.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae SP18-BS74] gi|306484485|gb|ADM91354.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae 670-6B] Length = 543 Score = 264 bits (675), Expect = 2e-68, Method: Composition-based stats. Identities = 68/390 (17%), Positives = 154/390 (39%), Gaps = 40/390 (10%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAF-QVPNLQI----FRSEPIHYRMRAEFHIWHDGDDLY 59 L Y +QL K +++ + + ++++ P+ YR +A+ + L Sbjct: 83 LGHLSYPEQLKFKTKQVKDSLYKIAGIADVEVAETLGMEHPVKYRNKAQVPVRRVNGVLE 142 Query: 60 HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIR-----------LEPLLRAKLFQID 108 F + + + M ++ F +I+ +++ + +R L+R + + Sbjct: 143 TGFFRKNSHDLMPLEDFFIQDPVIDQVVVALRDLLRRFDLKPYDEKEQSGLIRNLVVRRG 202 Query: 109 YLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR 164 + + Q +VT + L + + + + Q + + + Sbjct: 203 HYSGQIMVVLVTTRPKVFRVDQLIEQVIKQFPEIVSVMQNINDQNTNAIFGKEWRTLYGQ 262 Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNF 223 DY+ +++ ++ +F Q N + + + + + + D++ + Y G G Sbjct: 263 DYITDQMLGND----FQIAGPAFYQVNTEMAEKLYQTAIDFAELKKDDVIIDAYSGIGTI 318 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 L +A+H V VE+ +VE ++ N N+++N V +++ + ++ Sbjct: 319 GLSVAKHVKEVYGVELIPEAVENSKKNAQLNNISNAHYVCDTAENAMKNWLKD------- 371 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST-THT 340 + I VDPPR GL ++ + I YISCN ++ RD+ + + Sbjct: 372 -----GIQPTVILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMARDIKLYQELGYE 426 Query: 341 IERLALFDQFPYTRHMECGVLLVRKPSGWH 370 ++++ D FP T H+E LL + H Sbjct: 427 LKKVQPVDLFPQTHHVETVALLSKLDVDKH 456 >gi|300172623|ref|YP_003771788.1| RNA m5u methyltransferase family [Leuconostoc gasicomitatum LMG 18811] gi|299887001|emb|CBL90969.1| RNA m5u methyltransferase family [Leuconostoc gasicomitatum LMG 18811] Length = 498 Score = 264 bits (675), Expect = 2e-68, Method: Composition-based stats. Identities = 85/390 (21%), Positives = 142/390 (36%), Gaps = 47/390 (12%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNL-------QIFRSEPIHYRMRAEFHIWHDGDD 57 L Y QLA K D L Q + FQ I P YR +A+F + G Sbjct: 128 LEHMTYPAQLAFKKDVLVQSLEKFQPRGWSDYDLRDTIGMENPYEYRNKAQFPVRKIGKK 187 Query: 58 LYHIMFDQQTKERMRIDYFMPGS-----------LLINALMIEMMATIRLEPLLRAKLFQ 106 L M+ + + + + + L++ L + + + ++ + + Sbjct: 188 LSIGMYKRGSHDLVDLPVVHTQDPITMKVLRTIRELLDKLSVSIYNEDKNHGTVKTIVVR 247 Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIG-------RANKTK 159 + + T + VT D A + AL Q ++T Sbjct: 248 VSHTTGEVQLTFVTNTDGFPGDTA---LITAINQALPEVTGIFQNFNPGRTSLVWGDETI 304 Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYC 218 +DY++E + ++ +F Q N + E +LA L++ Y Sbjct: 305 KLWGKDYIEETVMGK----TFQLSPRAFMQLNYTQMAVVYKEALLALDLTHADKLVDAYA 360 Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278 G G L LA V +EI +V+ A N NH+ N + +++E + E Sbjct: 361 GVGTIGLSLADKVGEVRGMEIIPEAVDDANINAKINHIENAQYEVGTAEELFPKWQSE-- 418 Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILS 336 + + VDPPR+GLD A + +YISCN +L RDL L+ Sbjct: 419 ----------GWLADALVVDPPRTGLDTALRREILRTKPEKFVYISCNASTLARDLVDLT 468 Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVRKP 366 + ++ + D FP T E V L R+ Sbjct: 469 KAYKVDYIQSIDMFPQTARWEGVVKLTRRD 498 >gi|225861011|ref|YP_002742520.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae Taiwan19F-14] gi|298230452|ref|ZP_06964133.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae str. Canada MDR_19F] gi|298255322|ref|ZP_06978908.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae str. Canada MDR_19A] gi|298502952|ref|YP_003724892.1| TrmA family tRNA (uracil-5-)-methyltransferase [Streptococcus pneumoniae TCH8431/19A] gi|225726771|gb|ACO22622.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae Taiwan19F-14] gi|298238547|gb|ADI69678.1| TrmA family tRNA (uracil-5-)-methyltransferase [Streptococcus pneumoniae TCH8431/19A] gi|332201499|gb|EGJ15569.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae GA47368] Length = 543 Score = 264 bits (675), Expect = 2e-68, Method: Composition-based stats. Identities = 68/390 (17%), Positives = 154/390 (39%), Gaps = 40/390 (10%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAF-QVPNLQI----FRSEPIHYRMRAEFHIWHDGDDLY 59 L Y +QL K +++ + + ++++ P+ YR +A+ + L Sbjct: 83 LGHLSYPEQLKFKTKQVKDSLYKIAGIADVEVAETLGMEHPVKYRNKAQVPVRRVNGVLE 142 Query: 60 HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIR-----------LEPLLRAKLFQID 108 F + + + M ++ F +I+ +++ + +R L+R + + Sbjct: 143 TGFFRKNSHDLMPLEDFFIQDPVIDQVVVALRDLLRRFDLKPYDEKEQSGLIRNLVVRRG 202 Query: 109 YLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR 164 + + Q +VT + L + + + + Q + + + Sbjct: 203 HYSGQIMVVLVTTRPKVFRVDQLIEQVIKQFPEIVSVMQNINDQNTNAIFGKEWRTLYGQ 262 Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNF 223 DY+ +++ ++ +F Q N + + + + + + D+ ++ Y G G Sbjct: 263 DYITDQMLGND----FQIAGPAFYQVNTEMAEKLYQTAIDFAELKKDDVVIDAYSGIGTI 318 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 L +A+H V VE+ +VE ++ N N+++N V +++ + ++ Sbjct: 319 GLSVAKHVKEVYGVELIPEAVENSKKNAQLNNISNAHYVCDTAENAMKNWLKD------- 371 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST-THT 340 + I VDPPR GL ++ + I YISCN ++ RD+ + + Sbjct: 372 -----GIQPTVILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMARDIKLYQELGYE 426 Query: 341 IERLALFDQFPYTRHMECGVLLVRKPSGWH 370 ++++ D FP T H+E LL + H Sbjct: 427 LKKVQPVDLFPQTHHVETVALLSKLDVDKH 456 >gi|296329282|ref|ZP_06871783.1| tRNA (uracil-5-)-methyltransferase [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296153638|gb|EFG94455.1| tRNA (uracil-5-)-methyltransferase [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 543 Score = 264 bits (674), Expect = 2e-68, Method: Composition-based stats. Identities = 76/390 (19%), Positives = 159/390 (40%), Gaps = 34/390 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAF-QVPNLQI----FRSEPIHYRMRAEFHIWHDGD 56 + +YE QL K + ++M + +++I + +YR + + Sbjct: 80 GCDFAMLKYESQLKYKRLMVEEVMRKIAGLSDIEISDVLASEDIYNYRNKIIEPFSIYNN 139 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-------LRAKLFQIDY 109 + F +++ E +D + S L N ++ E+ + + R L I Sbjct: 140 KIITGFFKRKSHEVFEVDENILNSKLGNRIIKELKEILNKNKISIYDENTHRGLLRNIMI 199 Query: 110 LTSQSDQAIVTLIYH-RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR---- 164 T+ +++A+V LI + + + ++ LR+ + K I + + KT + Sbjct: 200 RTNSNNEAMVVLIINFNKITENIKKLLFNLRENIEEIK-SIYISLNSKKTNTVIGEKNIL 258 Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNF 223 Y ++ + + + SF Q N + + ++ I +++ Y G G Sbjct: 259 IYGEKSIKENINGIEFHISPTSFFQINVKQAKKLYDIAISFFDDIDDKYIVDAYSGTGTI 318 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 +++A+ +V A+EI K + E N + N++ + + ++ L Sbjct: 319 GMIIAKKAKKVYAIEIVKSASEDGEKTAKENGIKNIEFINGAVEK------------ELV 366 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST-THT 340 + ++ + I DPPR GL+ + + V ++YISCNP + RD+ + S + Sbjct: 367 KLINNNKKIDIIIFDPPRKGLEASIIDKVAELNLKEVVYISCNPSTFARDIKLFSEKGYV 426 Query: 341 IERLALFDQFPYTRHMECGVLLVRKPSGWH 370 +++L D FP T H+E LL + H Sbjct: 427 LKKLQAVDMFPQTSHIETVALLSKLDVDKH 456 >gi|293365360|ref|ZP_06612077.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus oralis ATCC 35037] gi|291316810|gb|EFE57246.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus oralis ATCC 35037] Length = 451 Score = 264 bits (674), Expect = 2e-68, Method: Composition-based stats. Identities = 69/379 (18%), Positives = 151/379 (39%), Gaps = 40/379 (10%) Query: 10 YEQQLAEKVDRLRQMMLAF-QVPNLQI----FRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 Y +QL K +++ + + ++++ P+ YR +A+ + L F Sbjct: 88 YPEQLKFKTKQVKDSLYKIAGIRDVEVAETLGMEHPVKYRNKAQVPVRRVNGVLETGFFR 147 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIR-----------LEPLLRAKLFQIDYLTSQ 113 + + + M ++ F +I+ +++ + +R L+R + + + + Q Sbjct: 148 KNSHDLMPLEDFFIQDPMIDEVVVALRDLLRRYDLKPYDEKEQSGLIRNLVVRRGHYSGQ 207 Query: 114 SDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDE 169 +VT + L + + + + Q + +DY+ + Sbjct: 208 IMVILVTTRPKVFRVDQLIEQLIKQFPEIVSVVQNINDQNTNAIFGKDWRTLYGQDYITD 267 Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLA 228 ++ ++ +F Q N + + + + + D+ ++ Y G G L +A Sbjct: 268 QMLGND----FQISGPAFYQVNTEMAEKLYQTAIDFAELKGDDVVIDAYSGIGTIGLSVA 323 Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288 +H V VE+ +VE ++ N + N + N V +++ + +E Sbjct: 324 KHVKEVYGVEVIPEAVENSQKNASINGITNAHYVCDTAENAMKNWLKE------------ 371 Query: 289 SYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST-THTIERLA 345 + I VDPPR GL ++ + I YISCN ++ RD+ + + ++++ Sbjct: 372 GIQPTAILVDPPRKGLTESFIKAGSQTGADRIAYISCNVATMARDIKLYQELGYELKKIQ 431 Query: 346 LFDQFPYTRHMECGVLLVR 364 D FP T H+EC LLV+ Sbjct: 432 PVDLFPQTHHVECVALLVK 450 >gi|225854529|ref|YP_002736041.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae JJA] gi|225722765|gb|ACO18618.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae JJA] Length = 543 Score = 264 bits (674), Expect = 2e-68, Method: Composition-based stats. Identities = 68/390 (17%), Positives = 154/390 (39%), Gaps = 40/390 (10%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAF-QVPNLQI----FRSEPIHYRMRAEFHIWHDGDDLY 59 L Y +QL K +++ + + ++++ P+ YR +A+ + L Sbjct: 83 LGHLSYPEQLKFKTKQVKDSLYKIAGIADVEVAETLGMEHPVKYRNKAQVPVRRVNGVLE 142 Query: 60 HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIR-----------LEPLLRAKLFQID 108 F + + + M ++ F +I+ +++ + +R L+R + + Sbjct: 143 TGFFRKNSHDLMPLEDFFIQDPVIDQVVVALRDLLRRFDLKPYDEKEQSGLIRNLVVRRG 202 Query: 109 YLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR 164 + + Q +VT + L + + + + Q + + + Sbjct: 203 HYSGQIMVVLVTTRPKVFRVDQLIEQVIKQFPEIVSVMQNINDQNTNAIFGKEWRTLYGQ 262 Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNF 223 DY+ +++ ++ +F Q N + + + + + + D+ ++ Y G G Sbjct: 263 DYITDQMLGND----FQIAGPAFYQVNTEMAEKLYQTAIDFAELKKDDVVIDAYSGIGTI 318 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 L +A+H V VE+ +VE ++ N N+++N V +++ + ++ Sbjct: 319 GLSVAKHVKEVYGVELIPEAVENSKKNAQLNNISNAHYVCDTAENAMKNWLKD------- 371 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST-THT 340 + I VDPPR GL ++ + I YISCN ++ RD+ + + Sbjct: 372 -----GIQPTVILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMARDIKLYQELGYE 426 Query: 341 IERLALFDQFPYTRHMECGVLLVRKPSGWH 370 ++++ D FP T H+E LL + H Sbjct: 427 LKKVQPVDLFPQTHHVETVALLSKLDVDKH 456 >gi|168487479|ref|ZP_02711987.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae CDC1087-00] gi|183569696|gb|EDT90224.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae CDC1087-00] Length = 543 Score = 264 bits (674), Expect = 2e-68, Method: Composition-based stats. Identities = 68/390 (17%), Positives = 153/390 (39%), Gaps = 40/390 (10%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAF-QVPNLQI----FRSEPIHYRMRAEFHIWHDGDDLY 59 L Y +QL K +++ + + ++++ P+ YR +A+ + L Sbjct: 83 LGHLSYPEQLKFKTKQVKDSLYKIAGIADVEVAETLGMEHPVKYRNKAQVPVRRVNGVLE 142 Query: 60 HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIR-----------LEPLLRAKLFQID 108 F + + M ++ F +I+ +++ + +R L+R + + Sbjct: 143 TGFFRKNSHNLMPLEDFFIQDPVIDQVVVALRDLLRRFDLKPYDEKEQSGLIRNLVVRRG 202 Query: 109 YLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR 164 + + Q +VT + L + + + + Q + + + Sbjct: 203 HYSGQIMVVLVTTRPKVFRVDQLIEQVIKQFPEIVSVMQNINDQNTNAIFGKEWRTLYGQ 262 Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNF 223 DY+ +++ ++ +F Q N + + + + + + D+ ++ Y G G Sbjct: 263 DYITDQMLGND----FQIAGPAFYQVNTEMAEKLYQTAIDFAELKKDDVVIDAYSGIGTI 318 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 L +A+H V VE+ +VE ++ N N+++N V +++ + ++ Sbjct: 319 GLSVAKHVKEVYGVELIPEAVENSKKNAQLNNISNAHYVCDTAENAMKNWLKD------- 371 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST-THT 340 + I VDPPR GL ++ + I YISCN ++ RD+ + + Sbjct: 372 -----GIQPTVILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMARDIKLYQELGYE 426 Query: 341 IERLALFDQFPYTRHMECGVLLVRKPSGWH 370 ++++ D FP T H+E LL + H Sbjct: 427 LKKVQPVDLFPQTHHVETVALLSKLDVDKH 456 >gi|194397238|ref|YP_002037663.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae G54] gi|194356905|gb|ACF55353.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae G54] Length = 543 Score = 264 bits (674), Expect = 2e-68, Method: Composition-based stats. Identities = 68/390 (17%), Positives = 153/390 (39%), Gaps = 40/390 (10%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAF-QVPNLQI----FRSEPIHYRMRAEFHIWHDGDDLY 59 L Y +QL K +++ + + ++++ P+ YR +A+ + L Sbjct: 83 LGHLSYPEQLKFKTKQVKDSLYKIAGIADVEVAETLGMEHPVKYRNKAQVPVRRVNGVLE 142 Query: 60 HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIR-----------LEPLLRAKLFQID 108 F + + M ++ F +I+ +++ + +R L+R + + Sbjct: 143 TGFFRKNSHNLMPLEDFFIQDPVIDQVVVALRDLLRRFDLKPYDEKEQSGLIRNLVVRRG 202 Query: 109 YLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR 164 + + Q +VT + L + + + + Q + + + Sbjct: 203 HYSGQIMVVLVTTRPKVFRVDQLIEQVIKQFPEIVSVMQNINDQNTNAIFGKEWRTLYGQ 262 Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNF 223 DY+ +++ ++ +F Q N + + + + + + D++ + Y G G Sbjct: 263 DYITDQMLGND----FQIAGPAFYQVNTEMAEKLYQTAIDFAELKKDDVIIDAYSGIGTI 318 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 L +A+H V VE+ +VE ++ N N+++N V +++ + ++ Sbjct: 319 GLSVAKHVKEVYGVELIPEAVENSKKNAQLNNISNAHYVCDTAENAMKNWLKD------- 371 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST-THT 340 + I VDPPR GL ++ + I YISCN ++ RD+ + + Sbjct: 372 -----GIQPTVILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMARDIKLYQELGYE 426 Query: 341 IERLALFDQFPYTRHMECGVLLVRKPSGWH 370 ++++ D FP T H+E LL + H Sbjct: 427 LKKVQPVDLFPQTHHVETVALLSKLDVDKH 456 >gi|148994234|ref|ZP_01823527.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae SP9-BS68] gi|168488850|ref|ZP_02713049.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae SP195] gi|168576242|ref|ZP_02722136.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae MLV-016] gi|147927375|gb|EDK78406.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae SP9-BS68] gi|183572483|gb|EDT93011.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae SP195] gi|183577973|gb|EDT98501.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae MLV-016] gi|332073360|gb|EGI83839.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae GA17570] Length = 543 Score = 264 bits (674), Expect = 2e-68, Method: Composition-based stats. Identities = 68/390 (17%), Positives = 153/390 (39%), Gaps = 40/390 (10%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAF-QVPNLQI----FRSEPIHYRMRAEFHIWHDGDDLY 59 L Y +QL K +++ + + ++++ P+ YR +A+ + L Sbjct: 83 LGHLSYPEQLKFKTKQVKDSLYKIAGIADVEVAETLGMEHPVKYRNKAQVPVRRVNGVLE 142 Query: 60 HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIR-----------LEPLLRAKLFQID 108 F + + M ++ F +I+ +++ + +R L+R + + Sbjct: 143 TGFFRKNSHNLMPLEDFFIQDPVIDQVVVALRDLLRRFDLKPYDEKEQSGLIRNLVVRRG 202 Query: 109 YLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR 164 + + Q +VT + L + + + + Q + + + Sbjct: 203 HYSGQIMVVLVTTRPKVFRVDQLIEQVIKQFPEIVSVMQNINDQNTNAIFGKEWRTLYGQ 262 Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNF 223 DY+ +++ ++ +F Q N + + + + + + D+ ++ Y G G Sbjct: 263 DYITDQMLGND----FQIAGPAFYQVNTEMAEKLYQTAIDFAELKKDDVVIDAYSGIGTI 318 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 L +A+H V VE+ +VE ++ N N+++N V +++ + ++ Sbjct: 319 GLSVAKHVKEVYGVELIPEAVENSKKNAQLNNISNAHYVCDTAENAMKNWLKD------- 371 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST-THT 340 + I VDPPR GL ++ + I YISCN ++ RD+ + + Sbjct: 372 -----GIQPTVILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMARDIKLYQELGYE 426 Query: 341 IERLALFDQFPYTRHMECGVLLVRKPSGWH 370 ++++ D FP T H+E LL + H Sbjct: 427 LKKVQPVDLFPQTHHVETVALLSKLDVDKH 456 >gi|148998851|ref|ZP_01826287.1| RNA methyltransferase, TrmA family protein [Streptococcus pneumoniae SP11-BS70] gi|307067795|ref|YP_003876761.1| SAM-dependent methyltransferase [Streptococcus pneumoniae AP200] gi|147755278|gb|EDK62329.1| RNA methyltransferase, TrmA family protein [Streptococcus pneumoniae SP11-BS70] gi|301794164|emb|CBW36574.1| putative RNA methyltransferase [Streptococcus pneumoniae INV104] gi|306409332|gb|ADM84759.1| SAM-dependent methyltransferase [Streptococcus pneumoniae AP200] Length = 543 Score = 264 bits (674), Expect = 2e-68, Method: Composition-based stats. Identities = 69/390 (17%), Positives = 151/390 (38%), Gaps = 40/390 (10%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAF-QVPNLQI----FRSEPIHYRMRAEFHIWHDGDDLY 59 L Y +QL K +++ + + ++++ P+ YR +A+ + L Sbjct: 83 LGHLSYPEQLKFKTKQVKDSLYKIAGIADVEVAETLGMEHPVKYRNKAQVPVRRVNGVLE 142 Query: 60 HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIR-----------LEPLLRAKLFQID 108 F + + M ++ F +I+ +++ + +R L+R + + Sbjct: 143 TGFFRKNSHNLMPLEDFFIQDPVIDQVVVALRDLLRRFDLKPYDEKEQSGLIRNLVVRRG 202 Query: 109 YLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR 164 + + Q +VT + L + + + + Q + + Sbjct: 203 HYSGQIMVVLVTTRPKVFRVDQLIEQVIKQFPEIVSVMQNINDQNTNAIFGKEWCTLYGQ 262 Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNF 223 DY+ +++ ++ +F Q N + + + + + + D+ ++ Y G G Sbjct: 263 DYITDQMLGND----FQIAGPAFYQVNTEMAEKLYQTAIDFAELKKDDVVIDAYSGIGTI 318 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 L +A+H V VE+ +VE ++ N + N + N V +++ + +E Sbjct: 319 GLSVAKHVKEVYGVELIPEAVENSQKNASLNKITNAHYVCDTAENAMKKWLKE------- 371 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST-THT 340 + I VDPPR GL ++ + I YISCN ++ RD+ + + Sbjct: 372 -----GIQPTVILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMARDIKLYQELGYE 426 Query: 341 IERLALFDQFPYTRHMECGVLLVRKPSGWH 370 ++++ D FP T H+E LL + H Sbjct: 427 LKKVQPVDLFPQTHHVETVALLSKLDVDKH 456 >gi|148984983|ref|ZP_01818226.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae SP3-BS71] gi|147922681|gb|EDK73798.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae SP3-BS71] gi|301799994|emb|CBW32584.1| putative RNA methyltransferase [Streptococcus pneumoniae OXC141] Length = 543 Score = 264 bits (674), Expect = 2e-68, Method: Composition-based stats. Identities = 68/390 (17%), Positives = 153/390 (39%), Gaps = 40/390 (10%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAF-QVPNLQI----FRSEPIHYRMRAEFHIWHDGDDLY 59 L Y +QL K +++ + + ++++ P+ YR +A+ + L Sbjct: 83 LGHLSYPEQLKFKTKQVKDSLYKIAGIADVEVAETLGMEHPVKYRNKAQVPVRRVNGVLE 142 Query: 60 HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIR-----------LEPLLRAKLFQID 108 F + + M ++ F +I+ +++ + +R L+R + + Sbjct: 143 TGFFRKNSHNLMPLEDFFIQDPVIDQVVVALRDLLRRFDLKPYDEKEQSGLIRNLVVRRG 202 Query: 109 YLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR 164 + + Q +VT + L + + + + Q + + + Sbjct: 203 HYSGQIMVVLVTTRPKVFRVDQLIEQVIKQFPEIVSVMQNINDQNTNAIFGKEWRTLYGQ 262 Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNF 223 DY+ +++ ++ +F Q N + + + + + + D+ ++ Y G G Sbjct: 263 DYITDQMLGND----FQIAGPAFYQVNTEMAEKLYQTAIDFAELKKDDVVIDAYSGIGTI 318 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 L +A+H V VE+ +VE ++ N N+++N V +++ + ++ Sbjct: 319 GLSVAKHVKEVYGVELIPEAVENSKKNAQLNNISNAHYVCDTAENAMKNWLKD------- 371 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST-THT 340 + I VDPPR GL ++ + I YISCN ++ RD+ + + Sbjct: 372 -----GIQPTVILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMARDIKLYQELGYE 426 Query: 341 IERLALFDQFPYTRHMECGVLLVRKPSGWH 370 ++++ D FP T H+E LL + H Sbjct: 427 LKKVQPVDLFPQTHHVETVALLSKLDVDKH 456 >gi|322388962|ref|ZP_08062533.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus parasanguinis ATCC 903] gi|321144331|gb|EFX39738.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus parasanguinis ATCC 903] Length = 450 Score = 264 bits (674), Expect = 2e-68, Method: Composition-based stats. Identities = 78/386 (20%), Positives = 143/386 (37%), Gaps = 38/386 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54 ++ +Y++QL K D L+Q + F + I EP++YR + +F Sbjct: 81 GCQIMHLKYDKQLEFKTDLLQQALKKFSPEGFEQYDIRPTIGMQEPLYYRAKLQFQTRKF 140 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----------LRAKL 104 D + ++ Q + + + + +I A+ ++ + + +R + Sbjct: 141 KDQVKAGLYAQNSHYLVELKDCLVQDPVIQAIANDLADLLTYYQIPIADERKELGVRTMM 200 Query: 105 FQIDYLTSQSDQAIVT--LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162 + + Q +VT I L + + +T+I Sbjct: 201 VRRARKSGQVQIIVVTSRQINVNNLVQDLVTKHPEIVTVAVNKNTSRSSEIYGEQTQIIW 260 Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGNG 221 D + E + + +F Q N + E V A + L++ YCG G Sbjct: 261 GEDAILEGVL----DYEFSLSPRAFYQLNPEQTEVLYSEAVKALDVSSEDHLIDAYCGVG 316 Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281 A V ++I ++E A+YN N +++E +E Sbjct: 317 TIGFAFANRVKSVRGMDIIPEAIEDAKYNAKRMGFENTHYEAGTAEEIIPRWYQE----- 371 Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTH 339 YR + VDPPR+GL + + A ++Y+SCN +L RDL L+ + Sbjct: 372 -------GYRANAVIVDPPRTGLGTKLIETLLHYAPEKMVYVSCNVSTLARDLVALTKVY 424 Query: 340 TIERLALFDQFPYTRHMECGVLLVRK 365 +E + D FP+T E V LV+K Sbjct: 425 QVEYIQSVDMFPHTARTEAVVKLVKK 450 >gi|319757720|gb|ADV69662.1| hypothetical protein SSUJS14_0565 [Streptococcus suis JS14] Length = 453 Score = 264 bits (674), Expect = 2e-68, Method: Composition-based stats. Identities = 81/379 (21%), Positives = 147/379 (38%), Gaps = 40/379 (10%) Query: 10 YEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 Y QLA K ++ + + P+ YR +A + L F Sbjct: 88 YPAQLAFKKKQVENSLRKIAGISEIAVADTLGMDSPLAYRNKAAVPVRRVNGQLETGFFR 147 Query: 65 QQTKERMRIDYFMPGSLLINALMI---EMMATIRLEP--------LLRAKLFQIDYLTSQ 113 + + + + I+ F I+AL++ +++ + L+P L+R + + + + Q Sbjct: 148 KNSHDLVPIEDFYIQHKEIDALVLATRDLLRKLDLKPYDEKEQTGLVRNIVVRRGHYSGQ 207 Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY----VDE 169 +VT R RL +Q I N T +++ E Sbjct: 208 LMLVLVT---TRPKIFRVETLIERLTSQFPNLVSIVQNINDQN-TNAIFGQEFRLLHGSE 263 Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLA 228 + + SF Q N + + + + + D+ ++ Y G G L A Sbjct: 264 TIADTMLGNEFEISAPSFYQVNTEMAEKLYQTAIDFAELSADDVVIDAYSGIGTIGLSFA 323 Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288 + V VE+ + +V ++ N A N ++NV V S++ Q + Sbjct: 324 KQVKHVYGVEVVEKAVLDSQKNAARNGIDNVTYVCDSAESAMQKWVAD------------ 371 Query: 289 SYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILST-THTIERLA 345 + IFVDPPR GL ++ + + I+YISCN ++ RD+ + + + ++ Sbjct: 372 GVKPTVIFVDPPRKGLTESFIKASTSVKPEKIVYISCNVATMARDIKLYEELGYKLTKVQ 431 Query: 346 LFDQFPYTRHMECGVLLVR 364 D FP T H+EC VLL R Sbjct: 432 PADLFPNTHHVECVVLLQR 450 >gi|225856683|ref|YP_002738194.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae P1031] gi|225725093|gb|ACO20945.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae P1031] Length = 543 Score = 264 bits (674), Expect = 2e-68, Method: Composition-based stats. Identities = 67/390 (17%), Positives = 152/390 (38%), Gaps = 40/390 (10%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAF-QVPNLQI----FRSEPIHYRMRAEFHIWHDGDDLY 59 L Y +QL K +++ + + ++++ P+ YR +A+ + L Sbjct: 83 LGHLSYPEQLKFKTKQVKDSLYKIAGIADVEVAETLGMEHPVKYRNKAQVPVRRVNGVLE 142 Query: 60 HIMFDQQTKERMRIDYFMPGSLLINALMIEMM-----------ATIRLEPLLRAKLFQID 108 F + + + M ++ F +I+ +++ + L+R + + Sbjct: 143 TGFFRKNSHDLMPLEDFFIQDPVIDQVVVALRGLLRRFDLKPYDEKEQSGLIRNLVVRRG 202 Query: 109 YLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR 164 + + Q +VT + L + + + + Q + + + Sbjct: 203 HYSGQIMVVLVTTRPKVFRVDQLIEQVIKQFPEIVSVMQNINDQNTNAIFGKEWRTLYGQ 262 Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNF 223 DY+ +++ ++ +F Q N + + + + + + D+ ++ Y G G Sbjct: 263 DYITDQMLGND----FQIAGPAFYQVNTEMAEKLYQTAIDFAELKKDDVVIDAYSGIGTI 318 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 L +A+H V VE+ +VE ++ N N+++N V +++ + ++ Sbjct: 319 GLSVAKHVKEVYGVELIPEAVENSKKNAQLNNISNAHYVCDTAENAMKNWLKD------- 371 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST-THT 340 + I VDPPR GL ++ + I YISCN ++ RD+ + + Sbjct: 372 -----GIQPTVILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMARDIKLYQELGYE 426 Query: 341 IERLALFDQFPYTRHMECGVLLVRKPSGWH 370 ++++ D FP T H+E LL + H Sbjct: 427 LKKVQPVDLFPQTHHVETVALLSKLDVDKH 456 >gi|166033376|ref|ZP_02236205.1| hypothetical protein DORFOR_03102 [Dorea formicigenerans ATCC 27755] gi|166027733|gb|EDR46490.1| hypothetical protein DORFOR_03102 [Dorea formicigenerans ATCC 27755] Length = 378 Score = 264 bits (674), Expect = 2e-68, Method: Composition-based stats. Identities = 74/366 (20%), Positives = 140/366 (38%), Gaps = 42/366 (11%) Query: 23 QMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHD-GDDLYHIMFDQQTKERMRIDYFMPGSL 81 ++ A+ I P +YR + D ++ ++++ T + ++ + Sbjct: 32 SLLGAYGKVCPIIGMENPYYYRNKVHAVFDRDRKGNIISGIYEEGTHRVVPVENCLIEDE 91 Query: 82 LINAL-----------MIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDA 130 + I LLR L + + T + +V L+ + + Sbjct: 92 KSQEIIRTIRGMLKSFKIRTYDEDTGYGLLRHVLIRRGFSTG---EIMVVLVTGSPIFPS 148 Query: 131 WRECAIRLRDALHARKYQIQLIGR-------ANKTKICLDRDYVDERLTVAGRTLIYRQI 183 LR A + + ++ K ++ +RL ++R Sbjct: 149 KNNFVKALRKAHPEITTVVLNVNDRQTSMVLGDREKPIFGPGFIKDRLC----GCMFRIS 204 Query: 184 ENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 SF Q N + + + A + +++ YCG G L+ A+ +V+ VE+ K Sbjct: 205 PKSFYQVNPVQTAILYQTAIDYAGLTGKETVIDAYCGIGTIGLIAAKKAGKVIGVELNKD 264 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302 +V+ AR N N + N + + F M + +F+DPPR+ Sbjct: 265 AVKDARINAKENKITNAAFYQGDAGRFMVEMAA------------KGEKADVVFMDPPRA 312 Query: 303 GLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECG 359 G D+ + V + ++YISCNP++L RDL L+ + +E++ D FP+ H E Sbjct: 313 GSDERFLSSVVKLSPKKVIYISCNPETLARDLKYLTKHHYKVEKIQPVDMFPFCDHCETV 372 Query: 360 VLLVRK 365 LVRK Sbjct: 373 CELVRK 378 >gi|148988481|ref|ZP_01819928.1| RNA methyltransferase, TrmA family protein [Streptococcus pneumoniae SP6-BS73] gi|147926162|gb|EDK77236.1| RNA methyltransferase, TrmA family protein [Streptococcus pneumoniae SP6-BS73] Length = 543 Score = 264 bits (674), Expect = 2e-68, Method: Composition-based stats. Identities = 69/390 (17%), Positives = 152/390 (38%), Gaps = 40/390 (10%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAF-QVPNLQIF----RSEPIHYRMRAEFHIWHDGDDLY 59 L Y +QL K +++ + + ++++ P+ YR +A+ + L Sbjct: 83 LGHLSYPEQLKFKTKQVKDSLYKIAGIADVEVAETLDMEHPVKYRNKAQVPVRRVNGVLE 142 Query: 60 HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIR-----------LEPLLRAKLFQID 108 F + + M ++ F +I+ +++ + +R L+R + + Sbjct: 143 TGFFRKNSHNLMPLEDFFIQDPVIDQVVVALRDLLRRFDLKPYDEKEQSGLIRNLVVRRG 202 Query: 109 YLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR 164 + + Q +VT + L + + + + Q + + + Sbjct: 203 HYSGQIMVVLVTTRPKVFRVDQLIEQVIKQFPEIVSVMQNINDQNTNAIFGKEWRTLYGQ 262 Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNF 223 DY+ +++ ++ +F Q N + + + + + + D++ + Y G G Sbjct: 263 DYITDQMLGND----FQIAGPAFYQVNTEMAEKLYQTAIDFAELKKDDVIIDAYSGIGTI 318 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 L +A+H V VE+ +VE ++ N + N + N V +++ + +E Sbjct: 319 GLSVAKHVKEVYGVELIPEAVENSQKNASLNKITNAHYVCDTAENAMKKWLKE------- 371 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST-THT 340 + I VDPPR GL ++ + I YISCN ++ RD+ + + Sbjct: 372 -----GIQPTVILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMARDIKLYQELGYE 426 Query: 341 IERLALFDQFPYTRHMECGVLLVRKPSGWH 370 ++++ D FP T H+E LL + H Sbjct: 427 LKKVQPVDLFPQTHHVETVALLSKLDVDKH 456 >gi|168491923|ref|ZP_02716066.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae CDC0288-04] gi|221231781|ref|YP_002510933.1| RNA methyltransferase [Streptococcus pneumoniae ATCC 700669] gi|183573799|gb|EDT94327.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae CDC0288-04] gi|220674241|emb|CAR68776.1| putative RNA methyltransferase [Streptococcus pneumoniae ATCC 700669] Length = 543 Score = 263 bits (673), Expect = 2e-68, Method: Composition-based stats. Identities = 69/390 (17%), Positives = 152/390 (38%), Gaps = 40/390 (10%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAF-QVPNLQIF----RSEPIHYRMRAEFHIWHDGDDLY 59 L Y +QL K +++ + + ++++ P+ YR +A+ + L Sbjct: 83 LGHLSYPEQLKFKTKQVKDSLYKIAGIADVEVAETLDMEHPVKYRNKAQVPVRRVNGVLE 142 Query: 60 HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIR-----------LEPLLRAKLFQID 108 F + + M ++ F +I+ +++ + +R L+R + + Sbjct: 143 TGFFRKNSHNLMPLEDFFIQDPVIDQVVVALRDLLRRFDLKPYDEKEQSGLIRNLVVRRG 202 Query: 109 YLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR 164 + + Q +VT + L + + + + Q + + + Sbjct: 203 HYSGQIMVVLVTTRPKVFRVDQLIEQVIKQFPEIVSVMQNINDQNTNAIFGKEWRTLYGQ 262 Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNF 223 DY+ +++ ++ +F Q N + + + + + + D++ + Y G G Sbjct: 263 DYITDQMLGND----FQIAGPAFYQVNTEMAEKLYQTAIDFAELKKDDVIIDAYSGIGTI 318 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 L +A+H V VE+ +VE ++ N + N + N V +++ + +E Sbjct: 319 GLSVAKHVKEVYGVELIPEAVENSQKNASLNKITNAHYVCDTAENAMKKWLKE------- 371 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST-THT 340 + I VDPPR GL ++ + I YISCN ++ RD+ + + Sbjct: 372 -----GIQPTVILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMARDIKLYQELGYE 426 Query: 341 IERLALFDQFPYTRHMECGVLLVRKPSGWH 370 ++++ D FP T H+E LL + H Sbjct: 427 LKKVQPVDLFPQTHHVETVALLSKLDVDKH 456 >gi|195978633|ref|YP_002123877.1| RNA methyltransferase TrmA family [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|225868040|ref|YP_002743988.1| RNA methyltransferase [Streptococcus equi subsp. zooepidemicus] gi|195975338|gb|ACG62864.1| RNA methyltransferase TrmA family [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|225701316|emb|CAW98335.1| putative RNA methyltransferase [Streptococcus equi subsp. zooepidemicus] Length = 455 Score = 263 bits (673), Expect = 2e-68, Method: Composition-based stats. Identities = 79/386 (20%), Positives = 146/386 (37%), Gaps = 38/386 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54 ++ Y +QL K D +RQ + F+ + + +EP HYR + +F Sbjct: 81 GCQIMHLAYPKQLYFKDDIIRQALKKFKPKGYEDFEIRHTLGMAEPQHYRAKLQFQTRSF 140 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----------LRAKL 104 G + +F + + + ID + L A++ + + + +R + Sbjct: 141 GGSVKAGLFSEGSHRLVAIDDCLVQDQLTQAIVNRVTQLLDRHRIPIYNERRVAGIRTVM 200 Query: 105 FQIDYLTSQSDQAIVTLIYHRL--LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162 + + Q V+ RL L ++R KT+I Sbjct: 201 VRRAQASDQVQLIFVSSKEVRLAGLIAELTAAFPQIRTVALNINASKTSDIYGAKTEILW 260 Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNG 221 ++ + E + + + +F Q N + V+ A + +++ YCG G Sbjct: 261 GQETIQEEVL----SYSFALSPRAFYQLNPKQTEVLYSQVVQALDPTAEEHIIDAYCGVG 316 Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281 + L +A V ++I ++ AR N A +N ++E + E Sbjct: 317 SIGLAVADKVRSVRGMDIIPEAIADARKNAQALGFDNAYYETGKAEELIPSWYAE----- 371 Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILSTTH 339 YR + VDPPR+GLDD + + Y ++Y+SCN +L RDL L + Sbjct: 372 -------GYRADALIVDPPRTGLDDKLLQTILHYQPAKMIYVSCNTSTLARDLVSLVQVY 424 Query: 340 TIERLALFDQFPYTRHMECGVLLVRK 365 + + D FP+T E V L ++ Sbjct: 425 DVIYIQSVDMFPHTARTEAVVKLQKR 450 >gi|320546279|ref|ZP_08040599.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus equinus ATCC 9812] gi|320449056|gb|EFW89779.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus equinus ATCC 9812] Length = 450 Score = 263 bits (673), Expect = 2e-68, Method: Composition-based stats. Identities = 72/386 (18%), Positives = 140/386 (36%), Gaps = 38/386 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54 ++ +Y++QL K D + Q + F+ + + P HYR + +F Sbjct: 81 GCQIMHLRYDKQLEFKDDLIAQSLKKFKPAGYENYEIRHTLGMDVPYHYRAKLQFQTRSF 140 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----------LRAKL 104 ++ +F++ + + I L ++ + + + +R + Sbjct: 141 KGNVKAGLFEEGSHRLVDIKECFVQDELTQKIINRVAQLLEKHQVPIYDERKIAGIRTVM 200 Query: 105 FQIDYLTSQSDQAIVT--LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162 + T + +T ++ + A ++ KT++ Sbjct: 201 IRKAKATGEVQIIFITSRDVFLAPVIKALTAEFKEIKGIALNFNRSKSSEIYGEKTEVIW 260 Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNG 221 + E + + +F Q N + +AA + D +++ YCG G Sbjct: 261 GNADISEEVL----DYQFSLSPRAFYQLNPEQTQVLYSQAVAALDVTENDNIIDAYCGVG 316 Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281 A V ++I ++E A+ N +N +++ +E Sbjct: 317 TIGFAFAGRVKSVRGMDIIPEAIEDAKKNAQRMGFDNTYYEAGRAEDIIPKWYKE----- 371 Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILSTTH 339 YR + VDPPR+GLDD + + Y ++Y+SCN +L RDL LS + Sbjct: 372 -------GYRADALVVDPPRTGLDDKLLDTILKYQPAKMVYVSCNTATLARDLVKLSKVY 424 Query: 340 TIERLALFDQFPYTRHMECGVLLVRK 365 + + D FP+T E V LVRK Sbjct: 425 DVNYIQSVDMFPHTARTEAVVKLVRK 450 >gi|300813136|ref|ZP_07093513.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300495890|gb|EFK31035.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 448 Score = 263 bits (673), Expect = 2e-68, Method: Composition-based stats. Identities = 75/384 (19%), Positives = 152/384 (39%), Gaps = 42/384 (10%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPI----HYRMRAEFHIWHDGDDLYH 60 L +Y++QL K ++++++ + +++ + P YR +A+ + L Sbjct: 82 LAHLKYDKQLEFKQKQVKELLSKAHLDQIKVAETLPSPLETGYRNKAQVPVRMVKGQLEI 141 Query: 61 IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-----------LRAKLFQIDY 109 F + + + + ++ F I+ +++ + +R + + +R + Sbjct: 142 GFFRRHSHDLVPLEDFFTNDPEIDRVLLAVRDILREKRIPAYDEEKHQGQVRYLEVRRGT 201 Query: 110 LTSQSDQAIVTLIY-----HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR 164 T +V L H ++D+ + + + + + Sbjct: 202 ATGDMMVVLVCLDRDFPGLHAVVDEIKEIAGV--KSIFLNHNPKRTNVILGEHDYHLWGK 259 Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNF 223 Y+D+++ L + SF Q N+ + + + + DL+ + Y G G Sbjct: 260 RYIDDKIG----DLTFEISPQSFFQINSLQTPRLYKLAIDQAGLTKDDLIVDAYSGIGTI 315 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 L A++ V VE+ K +V+ A+ N N ++N K ++E E Sbjct: 316 GLSAAKYVKEVRGVEVVKAAVKDAKNNARLNQIHNAKYYAGKAEELMPKWAAE------- 368 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STTHT 340 + IFVDPPR GL + ++YISCNP +L RD+ +L +T Sbjct: 369 -----GLKTDVIFVDPPRKGLTKEFIDAAVKTGPKKVVYISCNPATLVRDMQLLMEAGYT 423 Query: 341 IERLALFDQFPYTRHMECGVLLVR 364 + ++ D FP T H+E VL+ R Sbjct: 424 TDLVSPVDMFPQTPHVETVVLMSR 447 >gi|118586769|ref|ZP_01544205.1| RNA methyltransferase, TrmA family [Oenococcus oeni ATCC BAA-1163] gi|118432762|gb|EAV39492.1| RNA methyltransferase, TrmA family [Oenococcus oeni ATCC BAA-1163] Length = 458 Score = 263 bits (673), Expect = 2e-68, Method: Composition-based stats. Identities = 82/385 (21%), Positives = 148/385 (38%), Gaps = 40/385 (10%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWHDGDDLYH 60 L+ Y QL K ++RQ+ + +L+I P HYR + + L Sbjct: 90 LVNLSYPAQLEFKRKQIRQLFHKVGIDDLEILPTLGMKNPTHYRNKTVVPVKFQAGRLVT 149 Query: 61 IMFDQQTKERMRIDYFMPGSLLI-----------NALMIEMMATIRLEPLLRAKLFQIDY 109 + + + + + I+ + I N I I E ++R + + Y Sbjct: 150 GFYRRGSHKLVPIEDYYLNDPKIDVVVGIARDVLNDFHISAYNEISREGIVRYLMVRHGY 209 Query: 110 LTSQSDQAIVTLIYHRLLD-DAWRECAIRLRD---ALHARKYQIQLIGRANKTKICLDRD 165 + Q+ A+V H + + +E R+ D L + + ++ R Sbjct: 210 HSGQTMLAVVATKKHLPHEKEIIKEINQRIPDLTSFLLNYNPKQTNVQLGLNNRVLSGRQ 269 Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFS 224 + + L L + NSF Q N + + +++ Y G G Sbjct: 270 VIHDTLL----GLDFEIGINSFYQVNPQTTAVLYTKAAELAELKSNQLVIDAYSGIGTIG 325 Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284 L +AR +V+ VE+ P+VE A+ N+ AN + N + + + E + Sbjct: 326 LSIARQVRKVIGVEVVAPAVEDAKKNMLANRIENAEYIAADAAE------------QFIK 373 Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STTHTI 341 + +FVDPPR GL + + + A +YISCNP +L RD ++ + I Sbjct: 374 WAAAGVKPDVVFVDPPRKGLTNDLIQSLGVMAPLKFVYISCNPATLARDAVLIKEQGYRI 433 Query: 342 ERLA-LFDQFPYTRHMECGVLLVRK 365 + DQFP T H+E + ++ Sbjct: 434 SKAVLPIDQFPQTMHVESITVFEKE 458 >gi|312867279|ref|ZP_07727489.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus parasanguinis F0405] gi|311097408|gb|EFQ55642.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus parasanguinis F0405] Length = 450 Score = 263 bits (673), Expect = 3e-68, Method: Composition-based stats. Identities = 77/387 (19%), Positives = 147/387 (37%), Gaps = 40/387 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54 ++ +Y++QL K D L+Q + F + I EP++YR + +F Sbjct: 81 GCQIMHLKYDKQLEFKTDLLQQALKKFSPEGFEQYDIRPTIGMQEPLYYRAKLQFQTRKF 140 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----------LRAKL 104 + ++ Q + + + + +I A+ ++ + + +R + Sbjct: 141 KGQVKAGLYAQNSHYLVELKDCLVQDPVIQAIANDLADLLTYYQIPIADERKELGVRTMM 200 Query: 105 FQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALH---ARKYQIQLIGRANKTKIC 161 + + Q Q IV L++ +E + + + + +T+I Sbjct: 201 VRRARKSGQV-QIIVVTSRQINLNNLVQELVTKHPEIVTVAVNKNTSRSSEIYGEQTQII 259 Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGN 220 + + E + + +F Q N + E V A + L++ YCG Sbjct: 260 WGEEAILEGVL----DYEFSLSPRAFYQLNPEQTEVLYSEAVKALDVSSEDHLIDAYCGV 315 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G A V ++I ++E A+YN N +++E +E Sbjct: 316 GTIGFAFANRVKSVRGMDIIPEAIEDAKYNAKRMGFENTHYEAGTAEEIIPRWYQE---- 371 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTT 338 YR + VDPPR+GL + + A ++Y+SCN +L RDL L+ Sbjct: 372 --------GYRANAVIVDPPRTGLGTKLIETLLQYAPEKMVYVSCNVSTLARDLVALTKV 423 Query: 339 HTIERLALFDQFPYTRHMECGVLLVRK 365 + +E + D FP+T E V LV+K Sbjct: 424 YQVEYIQSVDMFPHTARTEAVVKLVKK 450 >gi|291460187|ref|ZP_06599577.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Oribacterium sp. oral taxon 078 str. F0262] gi|291417134|gb|EFE90853.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Oribacterium sp. oral taxon 078 str. F0262] Length = 602 Score = 263 bits (673), Expect = 3e-68, Method: Composition-based stats. Identities = 80/427 (18%), Positives = 144/427 (33%), Gaps = 78/427 (18%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN---------LQIFRSEPIHYRMRAEFHIW 52 L +Y QL K +L + + P+ YR +A++ I Sbjct: 95 GCQLQSLKYSAQLKFKTRKLFTDLCRIGGVEEAFLREISDPIVGMENPLRYRNKAQYPIA 154 Query: 53 HDG-DDLYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLL 100 D + ++ + + + G+ + I + L+ Sbjct: 155 RDRMGRPSAGFYAGRSHRLIPCEDCLIGAEENRDILSILLRWMERFDIPPYDEGSGKGLI 214 Query: 101 RAKLFQIDYLTSQSDQAIVTL-----IYHRLLDDAWREC--------------------- 134 R L + Y + + +V + LL + Sbjct: 215 RHALIRKGYYSGEWMLCLVINGRSLPHWESLLSELKGAEAPDPEGSEGESFGAEFPSAGK 274 Query: 135 -------------AIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYR 181 IRLR + + + ++++R+ + + +R Sbjct: 275 EEGRENRGKRTRSKIRLRSFSFSIHTGRDNVIMGREIVNLYGPGFIEDRI----QGIRFR 330 Query: 182 QIENSFTQPNAGINVHMLEWVLAATK-GIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240 SF Q N + E VL + ++ +LYCG G SL+L+ RV +EI Sbjct: 331 ISPLSFYQVNPVQTERIYETVLEFSALSGTENVFDLYCGIGTISLLLSAAAGRVYGIEII 390 Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300 +V AR N N + N +++E E R + VDPP Sbjct: 391 PDAVRDARENAERNGIENAYFFTGAAEELLPRWHAE----------HPGERIDLVCVDPP 440 Query: 301 RSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHME 357 R G D+ + + + ++Y+SC+P +L RD+ L + + R+ FD FP T H+E Sbjct: 441 RKGCDERCLETIISMSPERLIYVSCDPATLARDIKYLREHGYELRRIRPFDNFPETVHIE 500 Query: 358 CGVLLVR 364 LL + Sbjct: 501 TVCLLSK 507 >gi|15902976|ref|NP_358526.1| hypothetical protein spr0932 [Streptococcus pneumoniae R6] gi|116515807|ref|YP_816392.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae D39] gi|149019625|ref|ZP_01834944.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae SP23-BS72] gi|168483100|ref|ZP_02708052.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae CDC1873-00] gi|50401573|sp|Q8DPY7|Y932_STRR6 RecName: Full=Uncharacterized RNA methyltransferase spr0932 gi|15458541|gb|AAK99736.1| Conserved hypothetical protein [Streptococcus pneumoniae R6] gi|116076383|gb|ABJ54103.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae D39] gi|147931000|gb|EDK81980.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae SP23-BS72] gi|172043444|gb|EDT51490.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae CDC1873-00] Length = 543 Score = 263 bits (673), Expect = 3e-68, Method: Composition-based stats. Identities = 68/390 (17%), Positives = 153/390 (39%), Gaps = 40/390 (10%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAF-QVPNLQI----FRSEPIHYRMRAEFHIWHDGDDLY 59 L Y +QL K +++ + + ++++ P+ YR +A+ + L Sbjct: 83 LGHLSYPEQLKFKTKQVKDSLYKIAGIADVEVAETLGMEHPVKYRNKAQVPVRRVNGVLE 142 Query: 60 HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIR-----------LEPLLRAKLFQID 108 F + + M ++ F +I+ +++ + +R L+R + + Sbjct: 143 TGFFRKNSHNLMPLEDFFIQDPVIDQVVVALRDLLRRFDLKPYDEKEQSGLIRNLVVRRG 202 Query: 109 YLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR 164 + + Q +VT + L + + + + Q + + + Sbjct: 203 HYSGQIMVVLVTTRPKVFRVDQLIEQVIKQFPEIVSVMQNINDQNTNAIFGKEWRTLYGQ 262 Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNF 223 DY+ +++ ++ +F Q N + + + + + + D+ ++ Y G G Sbjct: 263 DYITDQMLGND----FQIAGLAFYQVNTEMAEKLYQTAIDFAELKKDDVVIDAYSGIGTI 318 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 L +A+H V VE+ +VE ++ N N+++N V +++ + ++ Sbjct: 319 GLSVAKHVKEVYGVELIPEAVENSKKNAQLNNISNAHYVCDTAENAMKNWLKD------- 371 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST-THT 340 + I VDPPR GL ++ + I YISCN ++ RD+ + + Sbjct: 372 -----GIQPTVILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMARDIKLYQELGYE 426 Query: 341 IERLALFDQFPYTRHMECGVLLVRKPSGWH 370 ++++ D FP T H+E LL + H Sbjct: 427 LKKVQPVDLFPQTHHVETVALLSKLDVDKH 456 >gi|255528224|ref|ZP_05395044.1| RNA methyltransferase, TrmA family [Clostridium carboxidivorans P7] gi|296188118|ref|ZP_06856510.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium carboxidivorans P7] gi|255508074|gb|EET84494.1| RNA methyltransferase, TrmA family [Clostridium carboxidivorans P7] gi|296047244|gb|EFG86686.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium carboxidivorans P7] Length = 450 Score = 263 bits (673), Expect = 3e-68, Method: Composition-based stats. Identities = 81/391 (20%), Positives = 152/391 (38%), Gaps = 47/391 (12%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIF----RSEPIHYRMRAEFHIWHD--- 54 T YE+QL K ++ + + N + E YR + EF + Sbjct: 79 GCTTQFLPYEKQLELKHKQVLDLFHNAGIENYEFLGIETSPEEFEYRNKMEFTFGDEEKG 138 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGSLLINAL-----------MIEMMATIRLEPLLRAK 103 G+ + ++ + +D + + ++ E LR Sbjct: 139 GELTLGMHIKGKSFGIVNVDNCKIVDEDFRKILDFTVNYFRKNPLPYYRVMKREGYLRNL 198 Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAI------RLRDALHARKYQIQLIGRANK 157 + + T + +VT + ++E + L+ LH + +A++ Sbjct: 199 VIRKGKNTGEILVNLVTTSQIDFNLEEFKESLLNLSYAGELKGILHTINDSFSDVVQADE 258 Query: 158 TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-EL 216 K+ RDY+ E L L ++ SF Q N+ + V ++ +L Sbjct: 259 IKVLYGRDYIIEELM----GLKFKIAPESFFQTNSKGAEKLYSIVKEFLGDASSKVVFDL 314 Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276 YCG G ++A + +VL +E+ + +V+AA N N +NN + + + + + Sbjct: 315 YCGTGTIGQIVAPNAKKVLGIELIEEAVKAANENSKLNGLNNCEFIAGDVAKVIKTVTE- 373 Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSI 334 + I +DPPR G+ + V + P I+Y+SCNP +L DL Sbjct: 374 --------------KPDVIILDPPRPGVHPVALDYVIKFNAPDIVYVSCNPKTLVTDLKG 419 Query: 335 L-STTHTIERLALFDQFPYTRHMECGVLLVR 364 L +T+E++ + D FP+T H+E V L + Sbjct: 420 LIEAGYTVEKVKIMDMFPHTPHVETVVKLSK 450 >gi|223932232|ref|ZP_03624236.1| RNA methyltransferase, TrmA family [Streptococcus suis 89/1591] gi|223899213|gb|EEF65570.1| RNA methyltransferase, TrmA family [Streptococcus suis 89/1591] Length = 453 Score = 263 bits (673), Expect = 3e-68, Method: Composition-based stats. Identities = 81/379 (21%), Positives = 147/379 (38%), Gaps = 40/379 (10%) Query: 10 YEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 Y QLA K ++ + + P+ YR +A + L F Sbjct: 88 YPAQLAFKKKQVENSLRKIAGISEIAVADTLGMDNPLAYRNKAAVPVRRVNGQLETGFFR 147 Query: 65 QQTKERMRIDYFMPGSLLINALMI---EMMATIRLEP--------LLRAKLFQIDYLTSQ 113 + + + + I+ F I+AL++ +++ + L+P L+R + + + + Q Sbjct: 148 KNSHDLVPIEDFYIQHKEIDALVLATRDLLRKLDLKPYDEKEQTGLVRNIVVRRGHYSGQ 207 Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY----VDE 169 +VT R RL +Q I N T +++ E Sbjct: 208 LMLVLVT---TRPKIFRVETLIERLTSQFPNLVSIVQNINDQN-TNAIFGQEFHLLHGSE 263 Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLA 228 + + SF Q N + + + + + D+ ++ Y G G L A Sbjct: 264 TIADTMLGNEFEISAPSFYQVNTEMAEKLYQTAIDFAELSADDVVIDAYSGIGTIGLSFA 323 Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288 + V VE+ + +V ++ N A N ++NV V S++ Q + Sbjct: 324 KQVKHVYGVEVVEKAVLDSQKNAARNGIDNVTYVCDSAESAMQKWVAD------------ 371 Query: 289 SYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILST-THTIERLA 345 + IFVDPPR GL ++ + + I+YISCN ++ RD+ + + + ++ Sbjct: 372 GVKPTVIFVDPPRKGLTESFIKASTSVKPEKIVYISCNVATMARDIKLYEELGYKLTKVQ 431 Query: 346 LFDQFPYTRHMECGVLLVR 364 D FP T H+EC VLL R Sbjct: 432 PTDLFPNTHHVECVVLLQR 450 >gi|157150892|ref|YP_001450645.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus gordonii str. Challis substr. CH1] gi|157075686|gb|ABV10369.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus gordonii str. Challis substr. CH1] Length = 456 Score = 263 bits (673), Expect = 3e-68, Method: Composition-based stats. Identities = 70/379 (18%), Positives = 151/379 (39%), Gaps = 40/379 (10%) Query: 10 YEQQLAEKVDRLRQMMLAF-QVPNLQI----FRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 Y +QL K +++ + + ++++ +P+ YR +A+ + L F Sbjct: 88 YPEQLKFKSKQVKDSLYKIAGISDVEVAETLGMEDPVKYRNKAQVPVRRVNGVLETGFFR 147 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIR-----------LEPLLRAKLFQIDYLTSQ 113 + + + M ++ F +I+ +++ + +R L+R + + + + Q Sbjct: 148 KNSHDLMPLEDFFIQDPVIDQVVVALRDLLRRYDLKPYDEKEQSGLIRNLVVRCGHYSGQ 207 Query: 114 SDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDE 169 +VT + L + + + + + + + +DY+ + Sbjct: 208 IMVILVTTRPKIFRVEQLIEQVIKQFPEIVSVMQNINDRNTNAIFGKEWRTLYGQDYITD 267 Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLA 228 ++ ++ SF Q N + + + + D+ ++ Y G G L +A Sbjct: 268 QMLGND----FQIAGPSFYQVNTKMAEKLYQTAIDFADLRADDVVIDAYSGIGTIGLSVA 323 Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288 + V VE+ +VE ++ N A N + N V +++ + +E Sbjct: 324 KLVKEVYGVEVIPEAVENSKKNAAINGITNAHYVCDTAENAMKNWLKE------------ 371 Query: 289 SYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST-THTIERLA 345 + IFVDPPR GL ++ + I YISCN ++ RD+ + + ++++ Sbjct: 372 GIQPTVIFVDPPRKGLTESFIKASTQTGADRIAYISCNVATMARDIKLYQELGYELKKVQ 431 Query: 346 LFDQFPYTRHMECGVLLVR 364 D FP T H+E LLVR Sbjct: 432 PVDLFPQTHHVEVVSLLVR 450 >gi|229826831|ref|ZP_04452900.1| hypothetical protein GCWU000182_02210 [Abiotrophia defectiva ATCC 49176] gi|229788986|gb|EEP25100.1| hypothetical protein GCWU000182_02210 [Abiotrophia defectiva ATCC 49176] Length = 467 Score = 263 bits (672), Expect = 3e-68, Method: Composition-based stats. Identities = 78/407 (19%), Positives = 149/407 (36%), Gaps = 64/407 (15%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-VPNLQIFR------SEPIHYRMRAEFHIWHD 54 YE +L K +++ + + +I E +HYR +A+F + D Sbjct: 80 GCQFQHLSYEVELKFKQEKVFNCIKRIGGFKDEEIPMLPIIGCEEIMHYRNKAQFPVGVD 139 Query: 55 G-DDLYHIMFDQQTKERMRIDYF---MPGSLLI-----------------NALMIEMMAT 93 + + +++ E + + + LI + + Sbjct: 140 KNGETVTGFYAERSHEIVDTTKCCIHVEENELILETLKAFMKKYKISAYEEKINPKTRKP 199 Query: 94 IRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECA---------IRLRDALHA 144 + + L+R + + + T + +V + + +R+ Sbjct: 200 EKAKGLVRHIMTRKGFATGEIGICVVINGNTLPNAAEFTDMMLKAFEGRNDVRITSICVN 259 Query: 145 RKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA 204 +I + ++ K Y+ + + + ++ SF Q N + L Sbjct: 260 INKKITNVIFGDELKCIYGEPYIVDMI----EDIKFKISPFSFYQVNPAQTRKLYGKALE 315 Query: 205 ATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262 G+ G+ + +LYCG G SL LA+ V VEI +VE A+ N N + N Sbjct: 316 -FAGLTGEEVVWDLYCGIGTISLFLAKKAKEVYGVEIVPAAVENAKENAKLNGIENAYFT 374 Query: 263 RMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILY 320 +++ E +L + I VDPPR G D+ + + Y ++Y Sbjct: 375 VGKAED---------EAKKLP-------KPDVIVVDPPRKGCDEKLLETIMNYKPERVVY 418 Query: 321 ISCNPDSLCRDLSILS--TTHTIERLALFDQFPYTRHMECGVLLVRK 365 +SC+P +L RDL +L + +E + DQF H+E L+ RK Sbjct: 419 VSCDPATLARDLKVLCGDGGYKLEEVQAVDQFSRGVHVESVCLMTRK 465 >gi|39996552|ref|NP_952503.1| RNA methyltransferase [Geobacter sulfurreducens PCA] gi|51316711|sp|Q74D67|Y1452_GEOSL RecName: Full=Uncharacterized RNA methyltransferase GSU1452 gi|39983433|gb|AAR34826.1| RNA methyltransferase, TrmA family [Geobacter sulfurreducens PCA] gi|307634847|gb|ADI84291.2| RNA methyltransferase, TrmA family [Geobacter sulfurreducens KN400] Length = 495 Score = 263 bits (672), Expect = 3e-68, Method: Composition-based stats. Identities = 88/387 (22%), Positives = 151/387 (39%), Gaps = 38/387 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQV-PNLQIFRSEP----IHYRMRAEFHIWHDGD 56 L++ Y QL K + + +Q ++ + P +HYR A+ + Sbjct: 96 GCPLIVMHYPDQLNWKRTFTERQIRRYQTLGAAEVLATLPSPNQLHYRNSAKLVVSGTFR 155 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINA-----------LMIEMMATIRLEPLLRAKLF 105 ++ + + + M I LIN +++ LLR + Sbjct: 156 RPVIGIYRRNSHQVMDIGTCPLHHPLINRVVTAVKEGIAKCKVQVYNPRTGSGLLRYLVV 215 Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD 165 +I T + VT+ + + A L+ ++ + +Q + + I RD Sbjct: 216 RISERTGTAMAVFVTVERNY---NEIHHLAKHLQQSVPQVEVVVQNVNSSEGNVILGQRD 272 Query: 166 YVDER---LTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNG 221 Y R LT + + SF Q N+G + E V + + +++LYCG G Sbjct: 273 YFLTRQHALTEELGGIRFTISPRSFFQVNSGGARIIYETVRQWSSLTGKESVVDLYCGIG 332 Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281 +L LA V +E+ + +V A N N ++N + E + + E E Sbjct: 333 GIALFLAGTAREVHGIEVVEAAVNDAESNARLNRIHNCSFEAGDAAELIEELVEEGE--- 389 Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILST-T 338 R + ++PPR G D + V A I+Y+SC P +L RDL IL+ Sbjct: 390 ---------RLDLVVLNPPRKGCDAGVLNKVAAAGPARIVYVSCAPATLARDLDILAGLG 440 Query: 339 HTIERLALFDQFPYTRHMECGVLLVRK 365 + R+ D FP T H+E LLV+K Sbjct: 441 YATLRVQPVDMFPQTPHVENIALLVKK 467 >gi|227432946|ref|ZP_03914888.1| tRNA (uracil-5-)-methyltransferase [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227351292|gb|EEJ41576.1| tRNA (uracil-5-)-methyltransferase [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 498 Score = 263 bits (672), Expect = 3e-68, Method: Composition-based stats. Identities = 86/389 (22%), Positives = 147/389 (37%), Gaps = 47/389 (12%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNL-------QIFRSEPIHYRMRAEFHIWHDGDD 57 L Y QL K D L Q + FQ I P YR +A+F + GD Sbjct: 127 LEHMNYPAQLRFKKDVLVQSLEKFQPKGWSNYDIRDTIGMDHPYEYRNKAQFPVRKIGDK 186 Query: 58 LYHIMFDQQTKERMRIDYFMPGS-----------LLINALMIEMMATIRLEPLLRAKLFQ 106 L M+ + + + + + + L++ L + + + ++ + + Sbjct: 187 LSVGMYKRGSHDLVDLPVVHTQTPDTMKVMRTVRELLDKLSVSIYNEDKNRGTVKTIVAR 246 Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKI------ 160 + TS+ +T D A E + AL Q + + Sbjct: 247 VSQTTSEVQLTFITNTDGFPGDTALIE---AINQALPEVTGIFQNYNPGRTSLVWGEETL 303 Query: 161 -CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYC 218 +DY++E++ ++ +F Q N + LAA D L++ Y Sbjct: 304 KLWGKDYIEEKVLGK----TFQLSPRAFMQLNHTQMSVVYNQALAALDLTHADKLVDAYA 359 Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278 G G L LA V +EI +V+ A N NH++N ++++ + E Sbjct: 360 GVGTIGLSLADKAGEVRGMEIIPEAVDDANQNATLNHISNAHYEVGTAEKLFPKWQSE-- 417 Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCRDLSILS 336 + + VDPPR+GLD A +++ P +YISCN +L RDL LS Sbjct: 418 ----------GWIADALVVDPPRTGLDTALRREILRTQPEKFVYISCNASTLARDLVDLS 467 Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVRK 365 + ++ + D FP T E V L ++ Sbjct: 468 KAYKVDYIQSIDMFPQTARWEGVVKLTKR 496 >gi|325684651|gb|EGD26806.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 451 Score = 263 bits (672), Expect = 3e-68, Method: Composition-based stats. Identities = 74/385 (19%), Positives = 152/385 (39%), Gaps = 42/385 (10%) Query: 4 TLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPI----HYRMRAEFHIWHDGDDLY 59 +L +Y++QL K ++++++ + +++ + P YR +A+ + L Sbjct: 81 SLAHLKYDKQLEFKQKQVKELLSKAHLDQIKVAETLPSPLETGYRNKAQVPVRMVKGQLE 140 Query: 60 HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-----------LRAKLFQID 108 F + + + + ++ F I+ +++ + +R + + +R + Sbjct: 141 IGFFRRHSHDLVPLEDFFTNDPEIDRVLLAVRDILREKRIPAYDEEKHQGQVRYLEVRRG 200 Query: 109 YLTSQSDQAIVTLIY-----HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD 163 T +V L H ++D+ + + + + Sbjct: 201 TATGDMMVVLVCLDRDFPGLHAVVDEIKEIAGV--KSIFLNHNPKRTNVILGEHDYHLWG 258 Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGN 222 + Y+D+++ L + SF Q N+ + + + + DL+ + Y G G Sbjct: 259 KRYIDDKIG----DLTFEISPQSFFQINSLQTPRLYKLAIDQAGLTKDDLIVDAYSGIGT 314 Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282 L A++ V VE+ K +V+ A+ N N ++N K ++E E Sbjct: 315 IGLSAAKYVKEVRGVEVVKAAVKDAKNNARLNQIHNAKYYAGKAEELMPKWAAE------ 368 Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STTH 339 + IFVDPPR GL + ++YISCNP +L RD+ +L + Sbjct: 369 ------GLKTDVIFVDPPRKGLTKEFIDAAVKTGPKKVVYISCNPATLVRDMQLLMEAGY 422 Query: 340 TIERLALFDQFPYTRHMECGVLLVR 364 T + ++ D FP T H+E +L R Sbjct: 423 TTDLVSPVDMFPQTPHVESVTVLER 447 >gi|313123184|ref|YP_004033443.1| tRNA (uracil-5-)-methyltransferase related enzyme [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312279747|gb|ADQ60466.1| tRNA (Uracil-5-)-methyltransferase related enzyme [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 451 Score = 263 bits (672), Expect = 4e-68, Method: Composition-based stats. Identities = 74/385 (19%), Positives = 152/385 (39%), Gaps = 42/385 (10%) Query: 4 TLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPI----HYRMRAEFHIWHDGDDLY 59 +L +Y++QL K ++++++ + +++ + P YR +A+ + L Sbjct: 81 SLAHLKYDKQLEFKQKQVKELLSKAHLDQIKVAETLPSPLETGYRNKAQVPVRMVKGQLE 140 Query: 60 HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-----------LRAKLFQID 108 F + + + + ++ F I+ +++ + +R + + +R + Sbjct: 141 IGFFRRHSHDLVPLEDFFTNDPEIDRVLLAVRDILREKRIPAYDEEKHQGQVRYLEVRRG 200 Query: 109 YLTSQSDQAIVTLIY-----HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD 163 T +V L H ++D+ + + + + Sbjct: 201 TATGDMMVVLVCLDRDFPGLHAVVDEIKEIAGV--KSIFLNHNPKRTNVILGEHDYHLWG 258 Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGN 222 + Y+D+++ L + SF Q N+ + + + + DL+ + Y G G Sbjct: 259 KRYIDDKIG----DLTFEISPQSFFQINSLQTPRLYKLAIDQAGLTKDDLIVDAYSGIGT 314 Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282 L A++ V VE+ K +V+ A+ N N ++N K ++E E Sbjct: 315 IGLSAAKYVKEVRGVEVVKAAVKDAKNNARLNQIHNAKYYAGKAEELMPKWAAE------ 368 Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STTH 339 + IFVDPPR GL + ++YISCNP +L RD+ +L + Sbjct: 369 ------GLKTDVIFVDPPRKGLTKEFIDAAVKTGPKKVVYISCNPATLVRDMQLLMKAGY 422 Query: 340 TIERLALFDQFPYTRHMECGVLLVR 364 T + ++ D FP T H+E +L R Sbjct: 423 TTDLVSPVDMFPQTPHVESVTVLER 447 >gi|332075642|gb|EGI86110.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae GA17545] Length = 543 Score = 263 bits (672), Expect = 4e-68, Method: Composition-based stats. Identities = 70/385 (18%), Positives = 153/385 (39%), Gaps = 40/385 (10%) Query: 10 YEQQLAEKVDRLRQMMLAF-QVPNLQI----FRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 Y +QL K +++ + + ++++ P+ YR +A+ + L F Sbjct: 88 YPEQLKFKTKQVKDSLYKIAGISDVEVAETLGMENPVKYRNKAQVPVRRVNGVLETGFFR 147 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIR-----------LEPLLRAKLFQIDYLTSQ 113 + + + M ++ F +I+ L++ + +R L+R + + + + Q Sbjct: 148 KNSHDLMPLEDFFIQDPVIDELVVALRDLLRRYDLKPYDEKEQSGLIRNLVVRRGHYSGQ 207 Query: 114 SDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDE 169 +VT + L + + + + Q + + +D++ + Sbjct: 208 IMVILVTTRPKVFRVEQLIEQVIKQFPEIVSVMQNINDQNTNAIFGKEWRTLYGQDFITD 267 Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLA 228 ++ Y+ +F Q N + + + + + + D+ ++ Y G G L +A Sbjct: 268 QMLGND----YQIAGPAFYQVNTEMAEKLYQTTIDFAELKEDDVVIDAYSGIGTIGLSVA 323 Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288 +H V VE+ +VE ++ N NH++N V +++ + +E Sbjct: 324 KHVKEVYGVEVIPEAVENSKKNAQLNHISNTHYVCDTAENAMKNWLKE------------ 371 Query: 289 SYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST-THTIERLA 345 + I VDPPR GL ++ + I YISCN ++ RD+ + + ++++ Sbjct: 372 GIQPTVILVDPPRKGLTESFIKASSQTGADRIAYISCNVATMARDIKLYQELGYELKKVQ 431 Query: 346 LFDQFPYTRHMECGVLLVRKPSGWH 370 D FP T H+E LL + H Sbjct: 432 PVDLFPQTHHVETVALLSKLDVDKH 456 >gi|315650587|ref|ZP_07903651.1| 23S rRNA (uracil-5-)-methyltransferase [Eubacterium saburreum DSM 3986] gi|315487151|gb|EFU77469.1| 23S rRNA (uracil-5-)-methyltransferase [Eubacterium saburreum DSM 3986] Length = 465 Score = 263 bits (672), Expect = 4e-68, Method: Composition-based stats. Identities = 87/393 (22%), Positives = 154/393 (39%), Gaps = 47/393 (11%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL-------QIFRSEPIHYRMRAEFHIWHD 54 TL Y +L K +++ + +L I EP YR +++F Sbjct: 85 GCTLQSLDYRAELRLKQNKVENHLKRIGGFDLSNVEIEEIIGMEEPYRYRNKSQFPFGRK 144 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGSLL-----------INALMIEMMATIRLEPLLRAK 103 F +T + D + G + ++ ++R Sbjct: 145 NGKNITGYFAGRTHSIVEFDDCIIGIEENKTVLKTVLEFMEKYRVDAYNEEDTSGIVRHV 204 Query: 104 LFQIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQ----LIGRA 155 L + ++T + +V L+Y R L ++ L L + I + Sbjct: 205 LIRKGFVTGELMVCVVINADNLVYSRELVES---LCTALGKDLQSVSLNINKKNTNVILG 261 Query: 156 NKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLL 214 ++T R+Y+++ + + +R SF Q N + L A + + Sbjct: 262 DRTITIYGREYIEDYIG----DVKFRISPQSFYQVNPVQTKKLYGKALEYAALTGEETVW 317 Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274 ++YCG G SL LA+ V VEI +++ AR N N++ NVK ++E Sbjct: 318 DMYCGIGTISLFLAKSAKFVYGVEIVDAAIQNARENAKINNIENVKFFVGKAEEIIT--- 374 Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDL 332 E E ++DID I VDPPR GLD + + I+Y+SC+ +L RDL Sbjct: 375 GEYENGNIRDID-------VIVVDPPRKGLDKIAIDTMLKLSPKRIVYVSCDSSTLARDL 427 Query: 333 SILSTT-HTIERLALFDQFPYTRHMECGVLLVR 364 +L + +++L + DQF + H E V++ + Sbjct: 428 KLLCEKEYELKKLTVVDQFARSYHTESVVVMSK 460 >gi|291532749|emb|CBL05862.1| 23S rRNA m(5)U-1939 methyltransferase [Megamonas hypermegale ART12/1] Length = 373 Score = 263 bits (672), Expect = 4e-68, Method: Composition-based stats. Identities = 76/359 (21%), Positives = 134/359 (37%), Gaps = 40/359 (11%) Query: 30 VPNLQIFRSEP----IHYRMRAEFHIWH-DGDDLYHIMFDQQTKERMRIDYFMPGSLLIN 84 ++ I + P HYR + +F I + + + + + + N Sbjct: 7 KKDIIIHPTMPSVHEWHYRNKMQFPIGRSKKEGIIVGCYAHSSHNIINTENCHIQKHTNN 66 Query: 85 ALMIEMMA-------TIRLEPLLRAKLFQIDYLTSQSD-QAIVTLIYHRLLDDAWRECAI 136 + + ++ E L + T++ + + +V L+ + RE Sbjct: 67 VIANAVREMATKFKLSVYDEKTHYGLLRHVVGRTNRDETECMVVLVTAQPKIPRVREIVN 126 Query: 137 RLRDALHARKYQIQLIGRAN-------KTKICLDRDYVDERLTVAGRTLIYRQIENSFTQ 189 LR + +Q I + KI ++ +RL +L ++ SF Q Sbjct: 127 FLRSKIPNLTSVVQNINTGRNNIIMGKECKILWGASHITDRLG----SLKFKISALSFFQ 182 Query: 190 PNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248 N + E L A + +++ YCG G SL LA+ +V +EI ++ A Sbjct: 183 VNTEQAEKLYECALKYANLTGKETVIDGYCGTGTISLFLAQKAKKVYGMEIVPEAIRDAI 242 Query: 249 YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDAT 308 N N++ N + + + + + R R I DPPR+G Sbjct: 243 ANARDNNIRNAEFLTGDAAKLMPQLYR------------KGLRPDVIVTDPPRAGCAPEV 290 Query: 309 VGMVQAY--PHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364 + A I+Y+SCNP SL RD+ IL + + D FP T H+E LLV+ Sbjct: 291 LKTFAAMRPKRIVYVSCNPASLARDIGILDELGYKATEIQPVDMFPQTGHVESVCLLVK 349 >gi|116617299|ref|YP_817670.1| tRNA (uracil-5-)-methyltransferase related enzyme [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116096146|gb|ABJ61297.1| 23S rRNA m(5)U-1939 methyltransferase [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 496 Score = 263 bits (671), Expect = 4e-68, Method: Composition-based stats. Identities = 86/389 (22%), Positives = 147/389 (37%), Gaps = 47/389 (12%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNL-------QIFRSEPIHYRMRAEFHIWHDGDD 57 L Y QL K D L Q + FQ I P YR +A+F + GD Sbjct: 125 LEHMNYPAQLRFKKDVLVQSLEKFQPKGWSNYDIRDTIGMDHPYEYRNKAQFPVRKIGDK 184 Query: 58 LYHIMFDQQTKERMRIDYFMPGS-----------LLINALMIEMMATIRLEPLLRAKLFQ 106 L M+ + + + + + + L++ L + + + ++ + + Sbjct: 185 LSVGMYKRGSHDLVDLPVVHTQTPATMKVMRTVRELLDKLSVSIYNEDKNRGTVKTIVAR 244 Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKI------ 160 + TS+ +T D A E + AL Q + + Sbjct: 245 VSQTTSEVQLTFITNTDGFPGDTALIE---AINQALPEVTGIFQNYNPGRTSLVWGEETL 301 Query: 161 -CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYC 218 +DY++E++ ++ +F Q N + LAA D L++ Y Sbjct: 302 KLWGKDYIEEKVLGK----TFQLSPRAFMQLNHTQMSVVYNQALAALDLTHADKLVDAYA 357 Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278 G G L LA V +EI +V+ A N NH++N ++++ + E Sbjct: 358 GVGTIGLSLADKAGEVRGMEIIPEAVDDANQNATLNHISNAHYEVGTAEKLFPKWQSE-- 415 Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCRDLSILS 336 + + VDPPR+GLD A +++ P +YISCN +L RDL LS Sbjct: 416 ----------GWIADALVVDPPRTGLDTALRREILRTQPEKFVYISCNASTLARDLVDLS 465 Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVRK 365 + ++ + D FP T E V L ++ Sbjct: 466 KAYQVDYIQSIDMFPQTARWEGVVKLTKR 494 >gi|104773610|ref|YP_618590.1| methyltransferase [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|103422691|emb|CAI97304.1| Methyltransferase [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] Length = 451 Score = 263 bits (671), Expect = 4e-68, Method: Composition-based stats. Identities = 75/386 (19%), Positives = 151/386 (39%), Gaps = 42/386 (10%) Query: 3 GTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL---QIFRSE-PIHYRMRAEFHIWHDGDDL 58 +L +Y++QL K ++++++ + + +I S YR +A+ + L Sbjct: 80 ASLAHLKYDKQLEFKQKQVKELLSKAHLDQIKVAEILPSPLETGYRNKAQVPVRMVKGQL 139 Query: 59 YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-----------LRAKLFQI 107 F + + + + ++ F I+ +++ + +R + + +R + Sbjct: 140 EIGFFRRHSHDLVPLEDFFTNDPEIDRVLLAVRDILREKRIPAYDEEKHQGQVRYLEVRR 199 Query: 108 DYLTSQSDQAIVTLIY-----HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162 T +V L H ++D+ + + + + Sbjct: 200 GTATGDMMVVLVCLDRDFPGLHAVVDEIKEIAGV--KSIFLNHNPKRTNVILGEHDYHLW 257 Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNG 221 + Y+D+++ L + SF Q N+ + + + + DL+ + Y G G Sbjct: 258 GKRYIDDKIG----DLTFEISPQSFFQINSLQTPRLYKLAIDQAGLTKDDLIVDAYSGIG 313 Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281 L A++ V VE+ K +V+ A+ N N ++N K ++E E Sbjct: 314 TIGLSAAKYVKEVRGVEVVKAAVKDAKNNARLNQIHNAKYYVGKAEELMPKWAAE----- 368 Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STT 338 + IFVDPPR GL + ++YISCNP +L RD+ +L Sbjct: 369 -------GLKTDVIFVDPPRKGLTKEFIDAAVKTGPKKVVYISCNPATLVRDMQLLMEAG 421 Query: 339 HTIERLALFDQFPYTRHMECGVLLVR 364 +T + ++ D FP T H+E +L R Sbjct: 422 YTTDLVSPVDMFPQTPHVESVTVLER 447 >gi|261418686|ref|YP_003252368.1| RNA methyltransferase, TrmA family [Geobacillus sp. Y412MC61] gi|319765501|ref|YP_004131002.1| RNA methyltransferase, TrmA family [Geobacillus sp. Y412MC52] gi|261375143|gb|ACX77886.1| RNA methyltransferase, TrmA family [Geobacillus sp. Y412MC61] gi|317110367|gb|ADU92859.1| RNA methyltransferase, TrmA family [Geobacillus sp. Y412MC52] Length = 462 Score = 263 bits (671), Expect = 4e-68, Method: Composition-based stats. Identities = 87/383 (22%), Positives = 160/383 (41%), Gaps = 45/383 (11%) Query: 9 QYEQQLAEKVDRLRQMMLAFQ----VPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 YE QL K + ++ ++ V I P HYR + EF +G H + Sbjct: 96 HYEGQLRHKTEHVKTLLKEHGFDPGVVRDTIGMEHPWHYRNKMEFTFSPEGLLGLHEQGN 155 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKLFQIDYLTSQ 113 + + + ++ + I +E+ R E LLR + + + T + Sbjct: 156 FR--QVISLETCLIAGEKIVKAAMEVARWARDHQLPGYHKDTHEGLLRHVMVRESFATGE 213 Query: 114 SDQAI-VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIG-------RANKTKICLDRD 165 A+ T L +A + R+ AL K + L +A +T + RD Sbjct: 214 VMVALFATEAPEGELKEAAADLTERITKALPEVKSLLWLENRAWADRTQAEQTHVLAGRD 273 Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFS 224 ++ + L YR ++F Q N ++E L + + +++L+CG G FS Sbjct: 274 FIYDALC----GFRYRLWFDTFFQTNPVQAAKLVELALEMGEPQPHEKMIDLFCGVGTFS 329 Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284 L A+ + +EI + S+E+A+ N N ++N + ++ + + Sbjct: 330 LPFAKRVKELAGIEIVETSIESAKRNAKDNGIDNTYFLARDAR------------RGIDE 377 Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST-THTI 341 + R + + +DPPRSG + + ++Y+SCNP++ D++ L +T+ Sbjct: 378 VLEQFGRPELLLLDPPRSGAGGKVMRKIGRARPERVVYVSCNPETFASDITELVPFGYTL 437 Query: 342 ERLALFDQFPYTRHMECGVLLVR 364 E + D FP+T H+EC LLVR Sbjct: 438 ETVQPVDMFPHTAHVECCALLVR 460 >gi|187778559|ref|ZP_02995032.1| hypothetical protein CLOSPO_02154 [Clostridium sporogenes ATCC 15579] gi|187772184|gb|EDU35986.1| hypothetical protein CLOSPO_02154 [Clostridium sporogenes ATCC 15579] Length = 451 Score = 263 bits (671), Expect = 4e-68, Method: Composition-based stats. Identities = 73/392 (18%), Positives = 155/392 (39%), Gaps = 47/392 (11%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIF----RSEPIHYRMRAEFHIW---HD 54 + YE+QL K ++L ++ + + + E YR + EF Sbjct: 79 GCSTQYIPYEKQLEIKEEQLLKLFENKDIEDFEFLGVEKSPEEYEYRNKMEFTFGDMEKG 138 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYL---- 110 GD + ++ + +D +++ ++ + L + ++ + Sbjct: 139 GDLTLGMHVKNRSFSIVTVDNCEIVDKDFRSILTSVVNYFSKKGLPKYRVMSHEGFLRNL 198 Query: 111 ----TSQSDQAIVTLIYHRLLDDAWRECAIRL---------RDALHARKYQIQLIGRANK 157 + + +V ++ ++ ++E L + LH + + + +K Sbjct: 199 VIRKAKNTGEILVNIVTTSQMEFDFKEIVDILLKGEYKGEIKGILHTINDTLSDVVQVDK 258 Query: 158 TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-EL 216 +I RDY+ E L L ++ +F Q N+ + V ++ +L Sbjct: 259 LEILYGRDYIIEELL----GLKFKIAPEAFFQTNSKGAEKLYSIVKDFLGDASSKVVFDL 314 Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276 YCG G ++A +V+ VE+ + +V+AA N N ++N + + + + +++ Sbjct: 315 YCGTGTIGQIVAPKAKKVIGVELIEEAVKAANENAKLNGLDNCEFIAGDVAKVIKDLKQ- 373 Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSI 334 + I +DPPR G+ + V + I+Y+SCNP +L DL Sbjct: 374 --------------KPDIIILDPPRPGVHPVALEYVVKFEPKEIIYVSCNPKTLVDDLEY 419 Query: 335 L-STTHTIERLALFDQFPYTRHMECGVLLVRK 365 L + +E++ D FP+T H+E V + +K Sbjct: 420 LIDNGYKLEKVKGMDMFPHTPHVETVVRIAKK 451 >gi|147677853|ref|YP_001212068.1| SAM-dependent methyltransferases [Pelotomaculum thermopropionicum SI] gi|146273950|dbj|BAF59699.1| SAM-dependent methyltransferases [Pelotomaculum thermopropionicum SI] Length = 470 Score = 263 bits (671), Expect = 4e-68, Method: Composition-based stats. Identities = 83/399 (20%), Positives = 148/399 (37%), Gaps = 52/399 (13%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56 L Y +QL K ++ + P HYR + F + D Sbjct: 87 GCRLQHINYGEQLMLKTILVKDSLARIAGLEKVKVRAAAGMEHPWHYRNKVHFQVEERPD 146 Query: 57 DLYHIMFDQQTKERMRI---DYFM-PGSLLINALMIEMMATI------------------ 94 + +++ T G LL++ + ++ A I Sbjct: 147 KIALGFYEEGTHNLTAFFNEGACPGTGCLLVDDELNKLAALIEKLLNRHRGPFGRRILPQ 206 Query: 95 -RLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQL-- 151 R R + + + T + +VT + A+ + + LR L + I Sbjct: 207 KRQSRFFRHIVLRKGFFTGEVMAVLVTGSGEWPGEKAFVKELLSLRPGLVSLVRNINDGP 266 Query: 152 --IGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKG 208 + K++ R+++ +RL LI+R +SF Q N + + V A Sbjct: 267 PGVLFGKKSRCLAGREHIKDRLGH----LIFRISPSSFYQVNPVQTLVLYNKVQQYAALT 322 Query: 209 IQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268 + +++ Y G G+ +L LA RV +E +V AR N A N + N + + + Sbjct: 323 GRETVVDAYSGIGSIALFLAGRAKRVYGLEALPDAVADARKNAALNKITNAEFLTGKVES 382 Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPD 326 + R + + +DPPR G + V P ++Y+SCNP Sbjct: 383 LIPILAA------------QGQRPEVVVLDPPRHGCGREVLEAVVQMQVPRLVYVSCNPA 430 Query: 327 SLCRDLSILS-TTHTIERLALFDQFPYTRHMECGVLLVR 364 +L RDL + + ++ + D FP+T H+EC VL+ R Sbjct: 431 TLARDLRYFADNGYLVDEVQPVDMFPWTAHVECVVLMSR 469 >gi|297528764|ref|YP_003670039.1| RNA methyltransferase, TrmA family [Geobacillus sp. C56-T3] gi|297252016|gb|ADI25462.1| RNA methyltransferase, TrmA family [Geobacillus sp. C56-T3] Length = 462 Score = 263 bits (671), Expect = 4e-68, Method: Composition-based stats. Identities = 87/383 (22%), Positives = 161/383 (42%), Gaps = 45/383 (11%) Query: 9 QYEQQLAEKVDRLRQMML--AFQV--PNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 YE QL K ++++ ++ F I P HYR + EF +G H + Sbjct: 96 HYEGQLRHKTEQVKALLAQRGFDPDVVRETIGMERPWHYRNKMEFTFSPEGLLGLHEQGN 155 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKLFQIDYLTSQ 113 + + + ++ + I +E+ R E LLR + + + T + Sbjct: 156 FR--QVISLETCLIAGEKIVKAAMEVARWARDHQLPGYHKDTHEGLLRHVMVRESFATGE 213 Query: 114 SDQAI-VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIG-------RANKTKICLDRD 165 A+ T L +A + R+ AL K + L +A +T + RD Sbjct: 214 VMVALFATEAPEGELKEAAADLTERITKALPEVKSLLWLENRAWADRTQAEQTHVLAGRD 273 Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFS 224 ++ + L YR ++F Q N ++E L + + +++L+CG G FS Sbjct: 274 FIYDELC----GFRYRLWFDTFFQTNPVQAAKLVELALEMGEPQPHENMIDLFCGVGTFS 329 Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284 L A+ + +EI + S+E+A+ N N ++N + ++ + + Sbjct: 330 LPFAKRVKALAGIEIVETSIESAKRNAKDNGIDNTYFLARDAR------------RGIDE 377 Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST-THTI 341 + R + + +DPPRSG + + ++Y+SCNP++ D++ L +T+ Sbjct: 378 VLEQFGRPELLLLDPPRSGAGGKVMRKIGRARPERVVYVSCNPETFASDITELVPFGYTL 437 Query: 342 ERLALFDQFPYTRHMECGVLLVR 364 E + D FP+T H+EC LLVR Sbjct: 438 ETVQPVDMFPHTAHVECCALLVR 460 >gi|330718458|ref|ZP_08313058.1| RNA methyltransferase [Leuconostoc fallax KCTC 3537] Length = 496 Score = 263 bits (671), Expect = 5e-68, Method: Composition-based stats. Identities = 84/388 (21%), Positives = 145/388 (37%), Gaps = 41/388 (10%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHDGDD 57 L Y QLA K D + Q + FQ + Q I P YR +A+F + + Sbjct: 105 LEHMTYAAQLAFKKDVIAQALEKFQPRDWQSINLRDTIGMQHPYEYRNKAQFPVRKIQGE 164 Query: 58 LYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMA-------TIRLEPLLRAKLFQIDYL 110 L M+ + + E + + L +M ++ +I E + + + Sbjct: 165 LKMGMYARGSHELIDLPVVHTQDPLTMTVMRKVRDLLEKQSISIYNEEKNKGTVKTVVAR 224 Query: 111 TSQ-SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIG-------RANKTKICL 162 SQ S Q +T + + E ++ L Q ++T Sbjct: 225 ASQTSGQVQLTFVTNTDGFPGDSELIQAIQKELPQVVGIFQNYNPGRTSLVWGDETIKLW 284 Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNG 221 +DY++E + ++ +F Q N E +AA D L++ Y G G Sbjct: 285 GQDYIEETILGK----TFQLSPRAFMQLNHTQMTVAYETAIAALDLKHADRLVDAYAGVG 340 Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281 + LA V +E+ +V+ A N N ++N ++++ ++E Sbjct: 341 TIGITLADKTGEVRGMEVIPEAVDDAMINAQINGIDNATYEVGTAEQLLPQWQKE----- 395 Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILSTTH 339 + + VDPPR GL+ A + +Y+SCNP +L RDL LS + Sbjct: 396 -------GWIADALVVDPPRPGLEPALKKEILRTKPEKFVYMSCNPSTLARDLVELSKVY 448 Query: 340 TIERLALFDQFPYTRHMECGVLLVRKPS 367 ++ + D FP T E L RK + Sbjct: 449 RVDYIQSIDMFPQTPRWEGIAKLTRKNN 476 >gi|168494457|ref|ZP_02718600.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae CDC3059-06] gi|183575617|gb|EDT96145.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae CDC3059-06] gi|332075376|gb|EGI85845.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae GA41301] Length = 543 Score = 263 bits (671), Expect = 5e-68, Method: Composition-based stats. Identities = 68/390 (17%), Positives = 152/390 (38%), Gaps = 40/390 (10%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAF-QVPNLQI----FRSEPIHYRMRAEFHIWHDGDDLY 59 L Y +QL K +++ + + ++++ P+ YR +A+ + L Sbjct: 83 LGHLSYPEQLKFKTKQVKDSLYKIAGIADVEVAETLGMEHPVKYRNKAQVPVRRVNGVLE 142 Query: 60 HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKLFQID 108 F + + M ++ F +I+ +++ + R L+R + + Sbjct: 143 TGFFRKNSHNLMPLEDFFIQDPVIDQVVVALRDLFRRFDLKPYDEKEHSGLIRNLVVRRG 202 Query: 109 YLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR 164 + + Q +VT + L + + + + Q + + + Sbjct: 203 HYSGQIMVVLVTTRPKVFRVDQLIEQVIKQFPEIVSVMQNINDQNTNAIFGKEWRTLYGQ 262 Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNF 223 DY+ +++ ++ +F Q N + + + + + + D+ ++ Y G G Sbjct: 263 DYITDQMLGND----FQIAGPAFYQVNTEMAEKLYQTAIDFAELKKDDVVIDAYSGIGTI 318 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 L +A+H V VE+ +VE ++ N N+++N V +++ + ++ Sbjct: 319 GLSVAKHVKEVYGVELIPEAVENSKKNAQLNNISNAHYVCDTAENAMKNWLKD------- 371 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST-THT 340 + I VDPPR GL ++ + I YISCN ++ RD+ + + Sbjct: 372 -----GIQPTVILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMARDIKLYQELGYE 426 Query: 341 IERLALFDQFPYTRHMECGVLLVRKPSGWH 370 ++++ D FP T H+E LL + H Sbjct: 427 LKKVQPVDLFPQTHHVETVALLSKLDVDKH 456 >gi|56418892|ref|YP_146210.1| RNA methyltransferase [Geobacillus kaustophilus HTA426] gi|56378734|dbj|BAD74642.1| RNA methyltransferase [Geobacillus kaustophilus HTA426] Length = 462 Score = 263 bits (671), Expect = 5e-68, Method: Composition-based stats. Identities = 86/383 (22%), Positives = 161/383 (42%), Gaps = 45/383 (11%) Query: 9 QYEQQLAEKVDRLRQMMLAFQ----VPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 +YE QL K + ++ ++ V I P HYR + EF +G H + Sbjct: 96 RYEGQLRHKTEHVKTLLKEHGFDPGVVRDTIGMEHPWHYRNKMEFTFSPEGLLGLHERGN 155 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKLFQIDYLTSQ 113 + + + ++ + I +E+ R E LLR + + + T + Sbjct: 156 FR--QVISLETCLIAGEKIVKAAMEVARWARDHRLPGYHKDTHEGLLRHLMVRESFATGE 213 Query: 114 SDQAI-VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIG-------RANKTKICLDRD 165 A+ T L +A + R+ L K + L +A +T + RD Sbjct: 214 VMVALFATEAPEGDLKEAAADLTERITKMLPQVKSLLWLENRAWADRTQAEQTHVLAGRD 273 Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFS 224 ++ + L YR ++F Q N ++E L K + +++L+CG G FS Sbjct: 274 FIYDELC----GFRYRLWFDTFFQTNPVQAAKLVELALEMGKPQPHENMIDLFCGVGTFS 329 Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284 L A+ + +EI + S+E+A+ N N ++N + ++ + + Sbjct: 330 LPFAKRVKALAGIEIVETSIESAKRNAKDNGIDNTYFLARDAR------------RGIDE 377 Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST-THTI 341 + R + + +DPPRSG + + ++Y+SCNP++ D++ L + +T+ Sbjct: 378 VLEQFGRPELLLLDPPRSGAGGKVMRKIGRARPERVVYVSCNPETFASDITELVSFGYTL 437 Query: 342 ERLALFDQFPYTRHMECGVLLVR 364 + + D FP+T H+EC LLVR Sbjct: 438 KTVQPVDMFPHTAHVECCALLVR 460 >gi|295426510|ref|ZP_06819160.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus amylolyticus DSM 11664] gi|295063878|gb|EFG54836.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus amylolyticus DSM 11664] Length = 450 Score = 262 bits (670), Expect = 5e-68, Method: Composition-based stats. Identities = 79/382 (20%), Positives = 151/382 (39%), Gaps = 34/382 (8%) Query: 3 GTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFR----SEPIHYRMRAEFHIWHDGDDL 58 +L +Y++QL K +++ ++ + +++ E YR +A+ + L Sbjct: 80 ASLAHIKYDKQLEFKRNQVVNLLKKAHLDGVKVNETLPSPEQTGYRNKAQVPVREVNGQL 139 Query: 59 YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-------LRAKLFQIDYLT 111 F + + + + + F I+ +++ +R + + ++ +D Sbjct: 140 EIGFFRRHSHDLVPLTNFFTTDPEIDRVLVATRDILRKYEVPAYDEIHHKGEVRYLDVRR 199 Query: 112 SQS-DQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR-DYV-- 167 S++ + +V L+ + A + + L KT + L R DYV Sbjct: 200 SKANGKLMVILVCLHKDFPQLPKVAAEISQI--PEISSVILNYNPKKTNVILGRNDYVVL 257 Query: 168 -DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFSL 225 ++ L + +R SF Q N+ + + + D++ + Y G G L Sbjct: 258 GEDHLIDKIGDVEFRISPKSFFQINSLQTPRLYDLAIKKADLKANDVVVDAYSGIGTIGL 317 Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285 +A+H V +E + +VE A N N + N + V +++ E Sbjct: 318 SVAKHVKAVRGMETIREAVEDANANAKLNGIENAQYVTGKAEDVMPRWASE--------- 368 Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSIL-STTHTIE 342 + IFVDPPR GL + A I+YISCNP + RDL +L + + Sbjct: 369 ---GLKTDVIFVDPPRKGLTPEFINAAAATKPKRIVYISCNPATQIRDLQLLQEKGYHFD 425 Query: 343 RLALFDQFPYTRHMECGVLLVR 364 ++ D FP T H+E +L R Sbjct: 426 EISPVDMFPQTPHVESVTVLER 447 >gi|116513601|ref|YP_812507.1| tRNA (uracil-5-)-methyltransferase related enzyme [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|116092916|gb|ABJ58069.1| tRNA (uracil-5-)-methyltransferase related enzyme [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|325125246|gb|ADY84576.1| RNA methyltransferase [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 451 Score = 262 bits (670), Expect = 5e-68, Method: Composition-based stats. Identities = 74/386 (19%), Positives = 152/386 (39%), Gaps = 42/386 (10%) Query: 3 GTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPI----HYRMRAEFHIWHDGDDL 58 +L +Y++QL K ++++++ + +++ + P YR +A+ + L Sbjct: 80 ASLAHLKYDKQLEFKQKQVKELLSKAHLDQIKVAETLPSPLETGYRNKAQVPVRMVKGQL 139 Query: 59 YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-----------LRAKLFQI 107 F + + + + ++ F I+ +++ + +R + + +R + Sbjct: 140 EIGFFRRHSHDLVPLEDFFTNDPEIDRVLLAVRDILREKRIPAYDEEKHQGQVRYLEVRR 199 Query: 108 DYLTSQSDQAIVTLIY-----HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162 T +V L H ++D+ + + + + Sbjct: 200 GTATGDMMVVLVCLDRDFPGLHAVVDEIKEIAGV--KSIFLNHNPKRTNVILGEHDYHLW 257 Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNG 221 + Y+D+++ L + SF Q N+ + + + + DL+ + Y G G Sbjct: 258 GKRYIDDKIG----DLTFEISPQSFFQINSLQTPRLYKLAIDQAGLTKDDLIVDAYSGIG 313 Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281 L A++ V VE+ K +V+ A+ N N ++N K ++E E Sbjct: 314 TIGLSAAKYVKEVRGVEVVKAAVKDAKNNARLNQIHNAKYYVGKAEELMPKWAAE----- 368 Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STT 338 + IFVDPPR GL + ++YISCNP +L RD+ +L Sbjct: 369 -------GLKTDVIFVDPPRKGLTKEFIDAAVKTGPKKVVYISCNPATLVRDMQLLMEAG 421 Query: 339 HTIERLALFDQFPYTRHMECGVLLVR 364 +T + ++ D FP T H+E +L R Sbjct: 422 YTTDLVSPVDMFPQTPHVESVTVLER 447 >gi|260584770|ref|ZP_05852515.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Granulicatella elegans ATCC 700633] gi|260157427|gb|EEW92498.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Granulicatella elegans ATCC 700633] Length = 455 Score = 262 bits (670), Expect = 5e-68, Method: Composition-based stats. Identities = 83/389 (21%), Positives = 152/389 (39%), Gaps = 44/389 (11%) Query: 3 GTLL--IDQYEQQLAEKVDRLRQMMLAF-QVPNLQ----IFRSEPIHYRMRAEFHIWHDG 55 GT+ +YE QLA K +++ +M ++P L+ I P YR +A+ + Sbjct: 82 GTMPLQHMKYEAQLAFKQKQVKHVMNTIAKMPELEVRPTIGMEHPFGYRNKAQIPVRMVN 141 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-----------LRAKL 104 L F + + + + ++ F I+ +++ + +R + LR + Sbjct: 142 GLLTTGFFKKNSHDLVSMEDFHIQDPEIDRIILVVRDILRKYAIEAYDEEKHTGDLRHII 201 Query: 105 FQIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKI 160 + TSQ +VT + + D + + + + + ++ K+ Sbjct: 202 VRRGLRTSQVMIILVTRTEKFVQKEAVVDQITQQLPEVVSIVQNIQPHQSNVIMGSQKKV 261 Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYC 218 D E L + SF Q N + + A G+ GD +++ YC Sbjct: 262 LFGEDAFQEVLM----EFTFTISSRSFFQVNTIQTEVLYHEAIQA-AGLTGDETVVDAYC 316 Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278 G G SL A+ +V A+EI +++ A+ N N ++NV ++++ Sbjct: 317 GIGTMSLAFAKRAKKVYAMEIVPDAIQMAKENARINQIDNVTFEVGAAEKVMPTWVD--- 373 Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL- 335 + I VDPPR GLD A + ++Y+SCNP +L RDL++ Sbjct: 374 ---------SGLQPDVIVVDPPRKGLDGAFIDAAVKTKARKLVYVSCNPATLARDLALFQ 424 Query: 336 STTHTIERLALFDQFPYTRHMECGVLLVR 364 + D FP T +E +L R Sbjct: 425 EKGYQALYAQPVDMFPMTTAIETVAVLER 453 >gi|241895373|ref|ZP_04782669.1| 23S rRNA (uracil-5-)-methyltransferase [Weissella paramesenteroides ATCC 33313] gi|241871347|gb|EER75098.1| 23S rRNA (uracil-5-)-methyltransferase [Weissella paramesenteroides ATCC 33313] Length = 483 Score = 262 bits (670), Expect = 5e-68, Method: Composition-based stats. Identities = 80/384 (20%), Positives = 145/384 (37%), Gaps = 47/384 (12%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPN-------LQIFRSEPIHYRMRAEFHIWHDGDDLYHIM 62 Y+ QL K D +RQ + ++ I +P YR +A+F + +L M Sbjct: 119 YDGQLTFKQDVIRQALEKYKPAGYAHYKLLPTIGMDDPKEYRNKAQFPVREVDGELAVGM 178 Query: 63 FDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLFQIDYLT 111 + + + + + + ++ + + + + + +++ + ++ T Sbjct: 179 YKRHSHKLVDLPVVTTQHPATLKVVRGVRDILADMQLPIYNERKNKGIVKTLIARVSEST 238 Query: 112 SQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIG-------RANKTKICLDR 164 IVT R L DA E R+ AL Q I + T+ Sbjct: 239 GDVQLTIVTN--GRSLPDA-DELINRIHQALPEVVSIHQNINRGQSSLIWGDDTRQIWGE 295 Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNF 223 DY+ E + ++ +F Q N + + + A + D L++ Y G G Sbjct: 296 DYITEEINGK----TFKLSPRAFLQLNPRQTQRLYQEAIKALDLTKADKLIDAYSGVGTI 351 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 + LA H V ++ S++ A N NHV N +++E +E Sbjct: 352 GISLADHAGEVRGMDTVAESIDDANENAIDNHVTNATYYVGAAEELIPQWTQE------- 404 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILSTTHTI 341 + + VDPPR+GLD A + +Y+SCN +L RDL L+ + + Sbjct: 405 -----GWIADAVVVDPPRTGLDIALRQTILETKPEKFVYVSCNASTLARDLVDLAKVYRV 459 Query: 342 ERLALFDQFPYTRHMECGVLLVRK 365 + + D FP T E V +K Sbjct: 460 DYIQSIDMFPQTARWEGIVKFTKK 483 >gi|116618671|ref|YP_819042.1| tRNA (uracil-5-)-methyltransferase related enzyme [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116097518|gb|ABJ62669.1| tRNA (uracil-5-)-methyltransferase related enzyme [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 464 Score = 262 bits (670), Expect = 6e-68, Method: Composition-based stats. Identities = 76/379 (20%), Positives = 135/379 (35%), Gaps = 39/379 (10%) Query: 9 QYEQQLAEKVDRLRQMMLAFQV---PNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ 65 +YE QLA K ++ ++ V I P YR +A+ + L + + Sbjct: 99 KYEAQLAFKQHQIEELFKKVNVDVDVAPTIGMENPTGYRNKAQVPVQMINGKLETGFYRR 158 Query: 66 QTKERMRIDYFMPGSLLINA-----------LMIEMMATIRLEPLLRAKLFQIDYLTSQS 114 + + I+ F ++ L + + ++R + + Y + + Sbjct: 159 GSHRLVPIEDFYIQDPKVDEAVRITRDILRELGVSAYEEETKKGVIRHIMARRGYYSHEL 218 Query: 115 DQAIVTLIYHRLLDDAWRECAIR----LRDALHARKYQIQLIGRANKTKICLDRDYVDER 170 I+T D E L+ +H + + D + ++ Sbjct: 219 MVVIITNTKKLPNSDLIAEKLSAKLPELKSVIHNINNHDTNVIMGQWNETIWGEDDIHDQ 278 Query: 171 LTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFSLVLAR 229 L + NSF Q N + D++ + Y G G +L +A Sbjct: 279 LMGKD----FVIGPNSFYQVNPQTTSTLYALAAEKANLKPTDVVVDAYSGIGTITLSVAD 334 Query: 230 HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHS 289 ++ V++ + ++E A N N + N + V + E E Sbjct: 335 KVKKIYGVDVVEGAIEDAEKNAKNNQITNAEFVLADAPEQMAKWADE------------G 382 Query: 290 YRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDL-SILSTTHTIE-RLA 345 + +FVDPPR GL + V+A +YISCNP +L RD IL+ IE + Sbjct: 383 LKPNVVFVDPPRKGLTQELIDAVKAMNPEKFVYISCNPATLARDAVQILAAGFEIEGAVQ 442 Query: 346 LFDQFPYTRHMECGVLLVR 364 DQFP T H+E + + Sbjct: 443 PLDQFPQTTHVESITVFKK 461 >gi|260161759|emb|CAZ39303.1| hypothetical protein [Streptococcus suis] gi|313575341|emb|CBR26870.1| SAM-dependent methyltransferase related to tRNA (uracil-5-)-methyltransferase [Streptococcus phage phi-SsUD.1] Length = 451 Score = 262 bits (670), Expect = 6e-68, Method: Composition-based stats. Identities = 80/379 (21%), Positives = 147/379 (38%), Gaps = 40/379 (10%) Query: 10 YEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 Y QLA K ++ + + P+ YR +A + L F Sbjct: 88 YPAQLAFKKKQVENSLRKIAGISEIAVADTLGMDSPLAYRNKAAVPVRRVNGQLETGFFR 147 Query: 65 QQTKERMRIDYFMPGSLLINALMI---EMMATIRLEP--------LLRAKLFQIDYLTSQ 113 + + + + I+ F I+AL++ +++ + L+P L+R + + + + Q Sbjct: 148 KNSHDLVPIEDFYIQHKEIDALVLATRDLLRKLDLKPYDEKEQTGLVRNIVVRRGHYSGQ 207 Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY----VDE 169 +VT R RL +Q I N T +++ E Sbjct: 208 LMLVLVT---TRPKIFRVETLIERLTSQFPNLVSIVQNINDQN-TNAIFGQEFRLLHGSE 263 Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLA 228 + + SF Q N + + + + + D+ ++ Y G G L A Sbjct: 264 TIADTMLGNEFEISAPSFYQVNTEMAEKLYQTAIDFAELSADDVVIDAYSGIGTIGLSFA 323 Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288 + V VE+ + +V ++ N A N ++NV V S++ Q + Sbjct: 324 KQVKHVYGVEVVEKAVLDSQKNAARNGIDNVTYVCDSAESAMQKWVAD------------ 371 Query: 289 SYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILST-THTIERLA 345 + IFVDPPR GL ++ + + I+YISCN ++ RD+ + + + ++ Sbjct: 372 GVKPTVIFVDPPRKGLTESFIKASTSVKPEKIVYISCNVATMARDIKLYEELGYKLTKVQ 431 Query: 346 LFDQFPYTRHMECGVLLVR 364 D FP T H+EC LLV+ Sbjct: 432 PADLFPNTHHVECVALLVK 450 >gi|149012968|ref|ZP_01833857.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae SP19-BS75] gi|169832868|ref|YP_001694472.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae Hungary19A-6] gi|303255584|ref|ZP_07341635.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae BS455] gi|303260473|ref|ZP_07346441.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae SP-BS293] gi|303262830|ref|ZP_07348767.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae SP14-BS292] gi|303265300|ref|ZP_07351210.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae BS397] gi|303266507|ref|ZP_07352394.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae BS457] gi|303268374|ref|ZP_07354170.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae BS458] gi|147763121|gb|EDK70062.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae SP19-BS75] gi|168995370|gb|ACA35982.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae Hungary19A-6] gi|301801862|emb|CBW34580.1| putative RNA methyltransferase [Streptococcus pneumoniae INV200] gi|302597440|gb|EFL64535.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae BS455] gi|302636028|gb|EFL66526.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae SP14-BS292] gi|302638385|gb|EFL68852.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae SP-BS293] gi|302642095|gb|EFL72446.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae BS458] gi|302643958|gb|EFL74218.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae BS457] gi|302645165|gb|EFL75402.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae BS397] Length = 543 Score = 262 bits (669), Expect = 7e-68, Method: Composition-based stats. Identities = 67/390 (17%), Positives = 152/390 (38%), Gaps = 40/390 (10%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAF-QVPNLQI----FRSEPIHYRMRAEFHIWHDGDDLY 59 L Y +QL K +++ + + ++++ P+ YR +A+ + L Sbjct: 83 LGHLSYPEQLKFKTKQVKDSLYKIAGIADVEVAETLGMEHPVKYRNKAQVPVRRVNGVLE 142 Query: 60 HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIR-----------LEPLLRAKLFQID 108 F + + M ++ F +I+ +++ + +R L+R + + Sbjct: 143 TGFFRKNSHNLMPLEDFFIQDPVIDQVVVALRDLLRRFDLKPYDEKEQSGLIRNLVVRRG 202 Query: 109 YLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR 164 + + Q +V + L + + + + Q + + + Sbjct: 203 HYSGQIMVVLVATRPKVFRVDQLIEQVIKQFPEIVSVMQNINDQNTNAIFGKEWRTLYGQ 262 Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNF 223 DY+ +++ ++ +F Q N + + + + + + D+ ++ Y G G Sbjct: 263 DYITDQMLGND----FQIAGPAFYQVNTEMAEKLYQTAIDFAELKKDDVVIDAYSGIGTI 318 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 L +A+H V VE+ +VE ++ N N+++N V +++ + ++ Sbjct: 319 GLSVAKHVKEVYGVELIPEAVENSKKNAQLNNISNAHYVCDTAENAMKNWLKD------- 371 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST-THT 340 + I VDPPR GL ++ + I YISCN ++ RD+ + + Sbjct: 372 -----GIQPTVILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMARDIKLYQELGYE 426 Query: 341 IERLALFDQFPYTRHMECGVLLVRKPSGWH 370 ++++ D FP T H+E LL + H Sbjct: 427 LKKVQPVDLFPQTHHVETVALLSKLDVDKH 456 >gi|289167962|ref|YP_003446231.1| hypothetical protein smi_1119 [Streptococcus mitis B6] gi|288907529|emb|CBJ22366.1| conserved hypothetical protein [Streptococcus mitis B6] Length = 452 Score = 262 bits (669), Expect = 7e-68, Method: Composition-based stats. Identities = 67/380 (17%), Positives = 151/380 (39%), Gaps = 40/380 (10%) Query: 10 YEQQLAEKVDRLRQMMLAF-QVPNLQI----FRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 Y +QL K +++ + + ++++ P+ YR +A+ + L F Sbjct: 88 YPEQLKFKTKQVKDSLYKIAGITDVEVAETLGMENPVKYRNKAQVPVRRVNGVLETGFFR 147 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMA-----------TIRLEPLLRAKLFQIDYLTSQ 113 + + + M ++ F +I+ +++ + L+R + + + + Q Sbjct: 148 KNSHDLMPLEDFFIQDPVIDEVVVALRDLFRRYDLKPYDEKEQAGLIRNLVVRRGHYSGQ 207 Query: 114 SDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDE 169 +VT + L + + + + Q + + +D++ + Sbjct: 208 IMVILVTTRPKVFRVEQLIEQLIKQFPEIVSVMQNINDQNTNAIFGKEWRTLYGQDFITD 267 Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLA 228 ++ Y+ +F Q N + + + + + D+ ++ Y G G L +A Sbjct: 268 QMLGND----YQIAGPAFYQVNTEMAEKLYQTAIDFAELKADDVVIDAYSGIGTIGLSVA 323 Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288 +H V VE+ +VE + N N+++N V +++ + ++ Sbjct: 324 KHVKEVYGVEVIPEAVENSNKNAQLNNISNAHYVCDTAENAMKNWLKD------------ 371 Query: 289 SYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST-THTIERLA 345 + I VDPPR GL ++ + I YISCN ++ RD+ + + ++++ Sbjct: 372 GIQPTVILVDPPRKGLTESFIKASSQTGADRIAYISCNVATMARDIKLYQELGYELKKVQ 431 Query: 346 LFDQFPYTRHMECGVLLVRK 365 D FP T H+EC LLV++ Sbjct: 432 PVDLFPQTHHVECVSLLVKR 451 >gi|291276449|ref|YP_003516221.1| tRNA (uracil-5)-methyltransferase [Helicobacter mustelae 12198] gi|290963643|emb|CBG39475.1| tRNA (uracil-5)-methyltransferase [Helicobacter mustelae 12198] Length = 401 Score = 262 bits (669), Expect = 8e-68, Method: Composition-based stats. Identities = 130/401 (32%), Positives = 196/401 (48%), Gaps = 49/401 (12%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGD----- 56 G L Y QL +K + ++ +IF S +R R E I Sbjct: 10 GGCQLDKDYSTQLRQKYEDFTNLL---GFAPSEIFASPSRGFRARCELGIHKKPKSHAAF 66 Query: 57 -------------------------------DLYHIMFDQQTKERMRIDYFMPGSLLINA 85 +++ M K+ + I + Sbjct: 67 IDPHDVASCLNLSAQPTHFDSMHVALKNPTQEIFLSMNSLGKKDHIPIQNCPNLIPKLQK 126 Query: 86 LMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHAR 145 ++ ++ ++ E +L KL+ I+ L Q I+++IYHR L+D+W A L A Sbjct: 127 ILHQLPPLLQPE-ILSYKLYAINLL--GVGQGILSMIYHRKLEDSWEHAARNL-----AH 178 Query: 146 KYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA 205 + +IGR+ KI + D + L VAGR LIY E +F+QPN IN ML ++LA Sbjct: 179 SLGVSIIGRSKNQKILIGSDLQESSLNVAGRKLIYLHKEGNFSQPNPFINEKMLNFILAC 238 Query: 206 TKG-IQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRM 264 + + DLLELYCG+GNFS+ LA F+RV A E+ K ++ N N + N+ R+ Sbjct: 239 LQDHPRRDLLELYCGSGNFSIALADSFERVFATEVVKSAIPVLLENARRNDITNLTAARL 298 Query: 265 SSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD-ATVGMVQAYPHILYISC 323 S E QA+ ER+F RL+ +D+ + F I VDPPRSG+ D + +Q +P+I+Y+SC Sbjct: 299 SGLETMQALSFERDFFRLRGVDLRDFNFSHILVDPPRSGIGDIKMLHFLQKFPYIIYVSC 358 Query: 324 NPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 NP SL RD ILS +H + ALFDQFP+T H+E ++L + Sbjct: 359 NPHSLKRDFLILSQSHKVIHSALFDQFPHTHHVESIMILQK 399 >gi|296111048|ref|YP_003621429.1| RNA methyltransferase [Leuconostoc kimchii IMSNU 11154] gi|295832579|gb|ADG40460.1| RNA methyltransferase [Leuconostoc kimchii IMSNU 11154] Length = 500 Score = 262 bits (669), Expect = 8e-68, Method: Composition-based stats. Identities = 88/390 (22%), Positives = 146/390 (37%), Gaps = 47/390 (12%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNL-------QIFRSEPIHYRMRAEFHIWHDGDD 57 L Y QLA K D L Q + FQ I P YR +A+F + GD Sbjct: 128 LEHMTYAAQLAFKKDVLVQSLEKFQPKGWSTYDLRNTIGMENPYEYRNKAQFPVRKIGDQ 187 Query: 58 LYHIMFDQQTKERMRIDYFMPGS-----------LLINALMIEMMATIRLEPLLRAKLFQ 106 L M+ + + + + + + L++ L + + + ++ + + Sbjct: 188 LRVGMYKRSSHDLVDLPVVHTQNPATMKVLRTIRELLDKLSVSIYNEDKNRGTVKTIVAR 247 Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIG-------RANKTK 159 + + T VT D A + AL Q ++T Sbjct: 248 VSHTTGDVQLTFVTNTDGFPGDTA---LIAAINQALPEVTGIFQNFNPGRTSLVWGDETI 304 Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYC 218 +DY++E + ++ +F Q N + + L+A D L++ Y Sbjct: 305 KLWGKDYIEETVMGK----TFQLSPRAFMQLNHTQMSVVYKEALSALNLTHADKLVDAYS 360 Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278 G G L LA V +EI +V+ A N NH+ N +++E + E Sbjct: 361 GVGTIGLSLADKVGEVRGMEIIPEAVDDANINAKINHIENAHYEIGTAEELFPKWQSE-- 418 Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCRDLSILS 336 + + VDPPR+GLD A +++ P +YISCN +L RDL L+ Sbjct: 419 ----------GWLADALVVDPPRTGLDTALRREILRTQPEKFVYISCNASTLARDLVDLT 468 Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVRKP 366 + +E + D FP T E V L R+ Sbjct: 469 KAYKVEYIQSIDMFPQTARWEGVVKLTRRD 498 >gi|306831715|ref|ZP_07464872.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325978654|ref|YP_004288370.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|304426140|gb|EFM29255.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325178582|emb|CBZ48626.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 453 Score = 262 bits (669), Expect = 8e-68, Method: Composition-based stats. Identities = 80/379 (21%), Positives = 149/379 (39%), Gaps = 40/379 (10%) Query: 10 YEQQLAEKVDRLRQMMLAF-QVPNLQI----FRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 Y +QL K ++ + + ++++ + P YR +A+ + L F Sbjct: 88 YAEQLKFKRKQVMDNLYKTAGISDIEVSETLGMAHPYAYRNKAQVPVRRVNGQLETGFFR 147 Query: 65 QQTKERMRIDYFMPGSLLINAL---MIEMMATIRLEP--------LLRAKLFQIDYLTSQ 113 + + + M I + + I+ L +++ L+P L+R + + + + + Sbjct: 148 KHSHDLMPISDYYIQNKEIDRLINFTRDLLRRFDLKPYDEKEQTGLIRNLVVRRGHYSGK 207 Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD----YVDE 169 VT R + ++ A K +Q I N T + + Y + Sbjct: 208 MMLVFVT---TRPKIFRIEQIIEKIVAEFPAVKSIVQNINDKN-TNVIFGNEFKTLYGKD 263 Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLA 228 + + Y SF Q N + + + + + D +++ Y G G L A Sbjct: 264 TIIDSMLGNQYEISARSFYQVNTEMAERLYQTAIDFSDLTPEDIVIDAYSGIGTIGLSFA 323 Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288 ++ V VE+ + +VE A+ N A N + N V S++ ++ Sbjct: 324 KNVKAVYGVEVIEEAVEDAKRNAALNGITNAHYVADSAEHAMATWSKD------------ 371 Query: 289 SYRFKTIFVDPPRSGLDDATVGM-VQAYP-HILYISCNPDSLCRDLSILST-THTIERLA 345 + I VDPPR GL + + V P I YISCNP S+ RD+ + + + ++ Sbjct: 372 GIKPSVILVDPPRKGLTENFIKASVAMQPEKITYISCNPASMARDIKLYQELGYKLIKVQ 431 Query: 346 LFDQFPYTRHMECGVLLVR 364 D FP T H+E VL+ R Sbjct: 432 PVDLFPNTHHVETVVLMSR 450 >gi|323340242|ref|ZP_08080506.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus ruminis ATCC 25644] gi|323092433|gb|EFZ35041.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus ruminis ATCC 25644] Length = 464 Score = 262 bits (669), Expect = 8e-68, Method: Composition-based stats. Identities = 81/384 (21%), Positives = 149/384 (38%), Gaps = 42/384 (10%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHDG-D 56 L Y+ QL K D + Q + F+ + I +P HYR +A F + Sbjct: 92 LEHLNYDAQLDFKRDVILQALEKFKPRGYEKIELRKTIGMDDPYHYRNKAAFQVRMTKTG 151 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLL---INALMIEMMATIR--------LEPLLRAKLF 105 L ++ ++ + + F L I + +M + ++ + Sbjct: 152 KLIAGLYKPESHHLVDLPTFETQRKLTLEIIRKTLALMEKWHVCAYDERTNKGTVKTLVV 211 Query: 106 QIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161 + + T+++ VT + + + R +L + + ++T Sbjct: 212 RESFATNEAQLVFVTNERFIAHASEIAAELRNEFPQLVSVMQNYNPGKTSLVYGDETTRI 271 Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGN 220 RDY+ E+L + ++ +F Q N M + V A QG++L + YCG Sbjct: 272 FGRDYIIEKLG----DVSFKLSARAFFQMNPVQTKKMYDEVKQALNLKQGEILVDAYCGV 327 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G L + VL +++ ++ A+ N A + + NV +K+ + Sbjct: 328 GTIGLYCGKEAGLVLGMDVVSEAIADAKENAAMSGIKNVVYEEGDAKKIFAKWEKA---- 383 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTT 338 +F + VDPPR+GLDD T+ ++ +Y+SCNP +L RDL L + Sbjct: 384 --------GQKFDALVVDPPRTGLDDETIKVILRNKPKKFVYVSCNPSTLARDLVSLVSK 435 Query: 339 HTIERLALFDQFPYTRHMECGVLL 362 + + + D FP T E V L Sbjct: 436 YDVSYIQPIDMFPQTARTEAVVKL 459 >gi|77919963|ref|YP_357778.1| RNA methyltransferase [Pelobacter carbinolicus DSM 2380] gi|77546046|gb|ABA89608.1| 23S rRNA m(5)U-1939 methyltransferase [Pelobacter carbinolicus DSM 2380] Length = 489 Score = 261 bits (668), Expect = 9e-68, Method: Composition-based stats. Identities = 87/387 (22%), Positives = 152/387 (39%), Gaps = 40/387 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAF-----QVPNLQIFRSEPIHYRMRAEFHIWHDGD 56 +L+ Y QL K ++R+ + A+ + + EP+ YR A+ + Sbjct: 112 GCSLMSMGYADQLDFKQTKVREALNAYPQLKGTDISPILAAEEPLGYRTSAKLAVARRNG 171 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEP-----------LLRAKLF 105 + ++ + + E I L+N ++ + I + LLR L Sbjct: 172 RIVIGLYRRGSHEVADIGACPLHHPLVNRIVEVVREEIARQDIYLYNPVTRRGLLRYLLI 231 Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD 165 ++ T ++ VT A + R + Q + ++ + + R+ Sbjct: 232 KVSPATGKAMVTFVTAQREYKRITALAKWVAR---KIPEVVSVQQNVNASSG-NVIMGRE 287 Query: 166 YV----DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGN 220 + L + R SF Q N + V + L+LYCG Sbjct: 288 TLRMVGQPDLFDQVGNIRLRISPTSFFQVNHAQAARIYALVRRWAALESHEFALDLYCGI 347 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G +L LA+ RV+ VE+ + +V A+ N A N++ N + + + E Sbjct: 348 GGIALHLAQDAGRVIGVEMVEDAVRNAQQNAAMNNLANCRFLAGDTAEL----------- 396 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYPH-ILYISCNPDSLCRDLSILST- 337 L+D+ + T ++PPRSG D + V Q P I+Y+SCNPD+L RDL+ L Sbjct: 397 -LQDLIVDLPSLATAVLNPPRSGCDVEVLQAVTQLQPRTIIYVSCNPDTLARDLAELQKL 455 Query: 338 THTIERLALFDQFPYTRHMECGVLLVR 364 + + D FP T H+E LV+ Sbjct: 456 GYRTAEIQPVDMFPQTAHVESVARLVK 482 >gi|138893992|ref|YP_001124445.1| SAM-dependent methyltransferase [Geobacillus thermodenitrificans NG80-2] gi|134265505|gb|ABO65700.1| SAM-dependent methyltransferase [Geobacillus thermodenitrificans NG80-2] Length = 463 Score = 261 bits (668), Expect = 9e-68, Method: Composition-based stats. Identities = 86/383 (22%), Positives = 158/383 (41%), Gaps = 45/383 (11%) Query: 9 QYEQQLAEKVDRLRQMML--AFQV--PNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 QYE QL K + ++ ++ F I P HYR + EF +G H + Sbjct: 96 QYEGQLRHKTEHVKALLEQHGFDPNIVRETIGMEHPWHYRNKMEFTFSPEGLLGLHEQGN 155 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKLFQIDYLTSQ 113 + + + ++ + I +E+ R E LLR + + + T + Sbjct: 156 FR--QIISLETCLIAGERIVKAAMEVARWARDHQLPGYHKDTHEGLLRHVMVRESFATGE 213 Query: 114 SDQAI-VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIG-------RANKTKICLDRD 165 A+ T L A + R+ AL K + L +A +T + RD Sbjct: 214 VMVALFATEAPEGELKQAADDLTERITKALPEVKSLLWLENRAWADRIQAEQTHVLAGRD 273 Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFS 224 ++ + L YR ++F Q N ++E L K + +++L+CG G FS Sbjct: 274 FIYDELC----GFRYRLWFDTFFQTNPVQAAKLVELALEMGKPQPHEKMIDLFCGVGTFS 329 Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284 L A+ + +EI + S+E+A+ N N ++N + ++ + + Sbjct: 330 LPFAKRVKALAGIEIVETSIESAKRNAKDNGIDNTYFLARDAR------------RGIDE 377 Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST-THTI 341 + R + + +DPPRSG + + I+Y+SCNP++ D++ L +T+ Sbjct: 378 VLEQFGRPELLLLDPPRSGAGGKVMRKIGRSQPERIVYVSCNPETFAADIAELVPFGYTL 437 Query: 342 ERLALFDQFPYTRHMECGVLLVR 364 + + D FP+T H+E L+ R Sbjct: 438 KTVQPVDMFPHTAHVELVALMSR 460 >gi|258515464|ref|YP_003191686.1| RNA methyltransferase, TrmA family [Desulfotomaculum acetoxidans DSM 771] gi|257779169|gb|ACV63063.1| RNA methyltransferase, TrmA family [Desulfotomaculum acetoxidans DSM 771] Length = 458 Score = 261 bits (668), Expect = 1e-67, Method: Composition-based stats. Identities = 77/388 (19%), Positives = 136/388 (35%), Gaps = 41/388 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAF-QVPN----LQIFRSEPIHYRMRAEFHIWHDGD 56 L Y +QL K +R + +P+ I P +YR + H + Sbjct: 86 GCQLQHSSYAEQLKLKEKFVRDNLKRISGLPDAVVLPTIGMENPWNYRNKIHLHAGRKNN 145 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSL------------LINALMIEMMATIRLEPLLRAKL 104 F + + + + LIN +E + LLR + Sbjct: 146 RTVLGFFSEGSHILVEGTACCQINDGRLNEISAILEDLINKYKLEPYNKHSKKGLLRGVM 205 Query: 105 FQIDYLTSQSDQAIVTLIYHRLLDD----AWRECAIRLRDALHARKYQIQLIGRANKTKI 160 + T Q +VT+ + + + + + K+ Sbjct: 206 LRKAEATGQVMLVLVTVSGNLPGQSTFTRELVNQCPDITSIIRNINNGNNSLLLGSVNKL 265 Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCG 219 + E + + L + NSF Q N + + + L A +L+ YCG Sbjct: 266 IWGK----EIIVDKIKDLSFYISANSFYQINPKQTIKLYDKALEYAELKGNETVLDAYCG 321 Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279 G ++ + + +V +E +V+ AR N A N +NNV+ + ++ Sbjct: 322 IGTIAMYFSANARKVTGLESLNIAVKDARENAALNRLNNVEFLCGEVEKL---------- 371 Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILST 337 L + + I +DPPR G + + P I+Y+SCNP +L RDL +L Sbjct: 372 --LPEFAERNNNVDIIILDPPRQGCKQVVLEAIAKMRIPKIIYVSCNPGTLARDLGLLDK 429 Query: 338 -THTIERLALFDQFPYTRHMECGVLLVR 364 + I + D FP T H+E L + Sbjct: 430 LGYGIIEVQPVDMFPQTSHIEICTFLSK 457 >gi|295397194|ref|ZP_06807297.1| 23S rRNA (uracil-5-)-methyltransferase [Aerococcus viridans ATCC 11563] gi|294974583|gb|EFG50307.1| 23S rRNA (uracil-5-)-methyltransferase [Aerococcus viridans ATCC 11563] Length = 464 Score = 261 bits (668), Expect = 1e-67, Method: Composition-based stats. Identities = 79/392 (20%), Positives = 154/392 (39%), Gaps = 49/392 (12%) Query: 3 GTLL--IDQYEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFHIWHDG 55 GT+ YE QLA K ++ F + + + YR +A+ I D Sbjct: 90 GTMPLQHMTYEAQLAFKQKQVENAFSRFGLAEGREVLPTVGSEDTFKYRNKAQIPIGADD 149 Query: 56 DDLYH-IMFDQQTKERMRIDYFMPGSLLI-----------NALMIEMMATIRLEPLLRAK 103 + + + + + E + ++ F I N ++ + L+R Sbjct: 150 EGQLYSGFYRKNSHEIIPVEDFKIQLPGIDEAIASIVDIFNQHGLKGYDEGKHSGLIRNI 209 Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQI-------QLIGRAN 156 + + Y T +Q +V ++ + + + + L + + Sbjct: 210 VIRKGYYT---NQMMVIIVINGKDLPEENQIVTEIVEKLPEVVSIVLSSNTKQTNFVMSG 266 Query: 157 KTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLE 215 K ++ D ++++ + SF Q N + + + AA + +++ Sbjct: 267 KQRVLYGVDKYEDKM----FDFTFDISSRSFFQINTPQAEKLYQLAIDAADLTGEETVVD 322 Query: 216 LYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275 YCG G +L LA+ V VE+ +V+ A+ N A N++NNV ++ + Sbjct: 323 AYCGIGTITLALAKKAKHVYGVEVVGDAVKMAKNNAAKNYINNVHFETGQAETVMGEWVK 382 Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCRDLS 333 + + VDPPR GL+D + ++A P I+Y+SCNP ++ RD++ Sbjct: 383 A------------GVQPDVVVVDPPRKGLEDTFIESTIEANPEKIVYVSCNPTTMARDIA 430 Query: 334 IL-STTHTIERLALFDQFPYTRHMECGVLLVR 364 + E++ D FP T H+EC VL+ + Sbjct: 431 KFVEAGYDFEQVQPLDMFPQTWHVECVVLMQK 462 >gi|227432075|ref|ZP_03914088.1| TrmA family tRNA (uracil-5-)-methyltransferase [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227352157|gb|EEJ42370.1| TrmA family tRNA (uracil-5-)-methyltransferase [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 464 Score = 261 bits (668), Expect = 1e-67, Method: Composition-based stats. Identities = 76/379 (20%), Positives = 135/379 (35%), Gaps = 39/379 (10%) Query: 9 QYEQQLAEKVDRLRQMMLAFQV---PNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ 65 +YE QLA K ++ ++ V I P YR +A+ + L + + Sbjct: 99 KYEAQLAFKQHQIEELFKKINVDVDVAPTIGMENPTGYRNKAQVPVQMINGKLETGFYRR 158 Query: 66 QTKERMRIDYFMPGSLLINA-----------LMIEMMATIRLEPLLRAKLFQIDYLTSQS 114 + + I+ F ++ L + + ++R + + Y + + Sbjct: 159 GSHRLVPIEDFYIQDPKVDEAVRITRDILRELGVSAYEEETKKGVIRHIMARRGYYSHEL 218 Query: 115 DQAIVTLIYHRLLDDAWRECAIR----LRDALHARKYQIQLIGRANKTKICLDRDYVDER 170 I+T D E L+ +H + + D + ++ Sbjct: 219 MVVIITNTKKLPNSDLIAEKLSAKLPELKSVIHNINNHDTNVIMGQWNETIWGEDDIHDQ 278 Query: 171 LTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFSLVLAR 229 L + NSF Q N + D++ + Y G G +L +A Sbjct: 279 LMGKD----FVIGPNSFYQVNPQTTATLYALAAEKANLKPTDVVVDAYSGIGTITLSVAD 334 Query: 230 HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHS 289 ++ V++ + ++E A N N + N + V + E E Sbjct: 335 KVKKIYGVDVVEGAIEDAEKNAKNNQITNAEFVLADAPEQMAKWADE------------G 382 Query: 290 YRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDL-SILSTTHTIE-RLA 345 + +FVDPPR GL + V+A +YISCNP +L RD IL+ IE + Sbjct: 383 LKPNVVFVDPPRKGLTQELIDAVKAMNPEKFVYISCNPATLTRDAVQILAAGFEIEGAVQ 442 Query: 346 LFDQFPYTRHMECGVLLVR 364 DQFP T H+E + + Sbjct: 443 PLDQFPQTTHVESITVFKK 461 >gi|225388129|ref|ZP_03757853.1| hypothetical protein CLOSTASPAR_01864 [Clostridium asparagiforme DSM 15981] gi|225045790|gb|EEG56036.1| hypothetical protein CLOSTASPAR_01864 [Clostridium asparagiforme DSM 15981] Length = 452 Score = 261 bits (667), Expect = 1e-67, Method: Composition-based stats. Identities = 76/385 (19%), Positives = 144/385 (37%), Gaps = 43/385 (11%) Query: 2 SGTLLID-QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDG-DDLY 59 G ++D +YE+QL K + L + + I +P HYR + D ++ Sbjct: 76 GGCQMLDMEYEKQLEWKRNYLEEQLKGLCPVKGIIGMKDPYHYRNKVHAVFDRDRRGNII 135 Query: 60 HIMFDQQTKERMRIDYFMPGSLLINAL-----------MIEMMATIRLEPLLRAKLFQID 108 ++ + + + ++ + + + I LLR L + Sbjct: 136 SGIYQENSHIVVPVERCLIEDQKADEIIGTIRGMLKSFKIRTYDEDTGFGLLRHVLVRRG 195 Query: 109 YLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGR-------ANKTKIC 161 + T + +VT + + LR+ +Q + K + Sbjct: 196 FATGEIMVVLVTA---SPVFPSKNNFVKALREKHPEITTIVQNVNGRGTSMVLGEKEHVL 252 Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220 + Y+++ L +R SF Q N + L A + +L+ YCG Sbjct: 253 YGKGYIEDMLC----GCRFRISSKSFYQVNPVQTEVLYGKALELAGLTGKETVLDAYCGI 308 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G L+ +R V+ VE+ + +V+ A N N + N K + +F Sbjct: 309 GTIGLIASRKASSVIGVELNRDAVKDAVNNAKINGITNAKFYCNDAGKF----------- 357 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILST- 337 L D+ + + +DPPRSG + + V ++Y+SCNP++L RDL ++ Sbjct: 358 -LVDMAERGDKVDLVIMDPPRSGSTEEFMESVARMGVEKVVYVSCNPETLGRDLRVMKKL 416 Query: 338 THTIERLALFDQFPYTRHMECGVLL 362 + D F TRH+E +++ Sbjct: 417 GYGAVEGWGVDMFAGTRHVESVIMM 441 >gi|254303473|ref|ZP_04970831.1| tRNA (uracil-5-)-methyltransferase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148323665|gb|EDK88915.1| tRNA (uracil-5-)-methyltransferase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 462 Score = 261 bits (667), Expect = 1e-67, Method: Composition-based stats. Identities = 77/384 (20%), Positives = 161/384 (41%), Gaps = 34/384 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAF-QVPNLQI----FRSEPIHYRMRAEFHIWHDGD 56 + +YE QL K + ++M + +++I + +YR + + Sbjct: 91 GCDFAMLKYESQLKYKKLMVEEVMRKIAGLSDIKISDVLASEDVYNYRNKIIEPFSVYAN 150 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-------LRAKLFQIDY 109 + F +++ E +D + S L N ++ E+ + + + L I Sbjct: 151 KIITGFFRRKSHEVFEVDENILNSKLGNRIIKELKEILNKNKISVYNEITHKGLLRNIMI 210 Query: 110 LTSQSDQAIVTLIYHR-LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD--- 165 T+ +++A+V LI + + + ++ +LR+ + K I + + KT + + Sbjct: 211 RTNSNNEAMVVLIINSNKITENIKKLLFKLRENIEEIK-SIYISLNSKKTNTVIGENNVF 269 Query: 166 -YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNF 223 Y +E + + + SF Q N + + ++ I +++ Y G G Sbjct: 270 IYGEESIKENINGIEFHISPTSFFQINVKQAKRLYDIAISFFDDIDNKYIIDAYSGTGTI 329 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 +++A+ +V A+EI K + E N + N++ + ++ L Sbjct: 330 GMIMAKKAKKVYAIEIVKSASEDGEKTAKENGIENIEFINGPVEK------------ELV 377 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST-THT 340 + ++ R TI DPPR GL+ + + V ++YISCNP + RD+ + S + Sbjct: 378 KLINNNKRIDTIIFDPPRKGLEASIIDKVAELNLKEVVYISCNPSTFARDVKLFSEKGYV 437 Query: 341 IERLALFDQFPYTRHMECGVLLVR 364 +++L D FP T H+EC L+ + Sbjct: 438 LKKLQAVDMFPQTSHIECVGLIEK 461 >gi|170016553|ref|YP_001727472.1| 23S rRNA (uracil-5-)-methyltransferase [Leuconostoc citreum KM20] gi|169803410|gb|ACA82028.1| 23S rRNA (uracil-5-)-methyltransferase [Leuconostoc citreum KM20] Length = 498 Score = 261 bits (667), Expect = 1e-67, Method: Composition-based stats. Identities = 86/390 (22%), Positives = 145/390 (37%), Gaps = 47/390 (12%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNL-------QIFRSEPIHYRMRAEFHIWHDGDD 57 L Y QLA K D + Q + FQ I + P YR +A+F + D Sbjct: 128 LEHMTYSAQLAFKKDVIAQSLEKFQPKGWSDYDLRDTIGMANPYEYRNKAQFPVRKIDDV 187 Query: 58 LYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLFQ 106 L M+ + + E + + S L++ L + + + ++ + + Sbjct: 188 LSVGMYKRGSHELVDLPIVHTQSPATMKVLRTVRDLLDKLSVSIYNEDKNRGTVKTIVAR 247 Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKI------ 160 + + T VT D A + AL Q + + Sbjct: 248 VSHTTGDVQLTFVTNTDGFPGDVA---LIAAINQALPEVNGIFQNFNPGRTSLVWGEETI 304 Query: 161 -CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYC 218 +DY++E + ++ +F Q N + L+A D L++ Y Sbjct: 305 KLWGKDYIEETVMGK----TFQLSPRAFMQLNHTQMTVVYNEALSALNLTHADKLVDAYA 360 Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278 G G L LA V +EI +V+ A N NH++N K +++ + E Sbjct: 361 GVGTIGLSLADKAGEVRGMEIIPEAVDDANINAKINHISNAKYEVGTAEVLFPKWQAE-- 418 Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCRDLSILS 336 + + VDPPR+GLD A +++ P +YISCN +L RDL L+ Sbjct: 419 ----------GWLADALVVDPPRTGLDTALRREIIRTKPEKFVYISCNASTLARDLVDLT 468 Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVRKP 366 + ++ + D FP T E V L R+ Sbjct: 469 KAYKVDYIQSIDMFPQTARWEGVVKLTRRD 498 >gi|148380817|ref|YP_001255358.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum A str. ATCC 3502] gi|148290301|emb|CAL84425.1| putative RNA methyltransferase [Clostridium botulinum A str. ATCC 3502] Length = 456 Score = 261 bits (667), Expect = 1e-67, Method: Composition-based stats. Identities = 83/392 (21%), Positives = 149/392 (38%), Gaps = 47/392 (11%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIF----RSEPIHYRMRAEFHIW--HDG 55 + YE+QL K ++L ++ + ++ E YR + EF G Sbjct: 84 GCSTQYIPYEKQLQIKEEQLLKLFKSKEIKGFDFLGVEKSPEEYEYRNKMEFTFGDMEKG 143 Query: 56 DDLYHIMFDQQTK-ERMRIDYFMPGSLLI-----------NALMIEMMATIRLEPLLRAK 103 DL M + + +D N + + E LR Sbjct: 144 GDLTLGMHVKNRNFSIVTVDNCEIVDRDFRNILTTVVNYFNEKRLPKYRVMSHEGFLRNL 203 Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDA------WRECAIRLRDALHARKYQIQLIGRANK 157 + + T + IVT EC ++ LH + + + +K Sbjct: 204 VIRKAKNTGEILVNIVTTSQMEFDFKEIVDMLLKVECKGEIKGILHTINDTLSDVVQVDK 263 Query: 158 TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-EL 216 +I RDY+ E L L ++ +F Q N+ + V ++ +L Sbjct: 264 LEILYGRDYIIEELL----GLKFKIAPEAFFQTNSKGAEKLYSIVKDFLGDASSKVVFDL 319 Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276 YCG G ++A +V+ VE+ + +V+AA N N +NN + + + + +++ Sbjct: 320 YCGTGTIGQIVAPKAKKVIGVELIEEAVKAANENAKLNGLNNCEFIAGDVAKVIKDVKQ- 378 Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSI 334 + I +DPPR G+ + V + I+Y+SCNP +L DL Sbjct: 379 --------------KPDIIILDPPRPGVHPVALEYVVKFEPKEIIYVSCNPKTLVDDLKY 424 Query: 335 L-STTHTIERLALFDQFPYTRHMECGVLLVRK 365 L + +E++ D FP+T H+EC V + +K Sbjct: 425 LIDNGYKLEKVKGMDMFPHTPHVECVVKIEKK 456 >gi|116493460|ref|YP_805195.1| tRNA (uracil-5-)-methyltransferase related enzyme [Pediococcus pentosaceus ATCC 25745] gi|116103610|gb|ABJ68753.1| 23S rRNA m(5)U-1939 methyltransferase [Pediococcus pentosaceus ATCC 25745] Length = 491 Score = 261 bits (667), Expect = 1e-67, Method: Composition-based stats. Identities = 78/381 (20%), Positives = 142/381 (37%), Gaps = 41/381 (10%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPN-------LQIFRSEPIHYRMRAEFHIWHDGDDLYHIM 62 Y QL K D +RQ + F+ I +P+ YR +A+F + + + Sbjct: 127 YPAQLEFKRDVIRQSLTKFRPEGYKRFELLPTIGMEKPLEYRNKAQFQVRRLDGKVAAGL 186 Query: 63 FDQQTKERMRIDYFMPGSLL---INALMIEMMATIRLEPL--------LRAKLFQIDYLT 111 + + T + + + L I + +E+ + L+ + ++ T Sbjct: 187 YKEGTHDLVDLPTCSVQHPLTMEIIRIAVELFEKYNVSIYDEQTHTGSLKTIVVRVADAT 246 Query: 112 SQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYV 167 ++ +T L + + D + + + + +KT +D + Sbjct: 247 KETQVVFITNTPELEHVDEIIDELAAQFPEIVSFMQNLNPSRESLIWGDKTLNLRGKDTI 306 Query: 168 DERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGNGNFSLV 226 E L L + +F Q N + E A +L++ Y G G L Sbjct: 307 REEL----DGLSFNLSARAFFQLNPKQTSVLYAETRKALELSPDDNLVDAYSGVGTIGLS 362 Query: 227 LARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDID 286 LA V ++ + ++E A N N + N ++++ L Sbjct: 363 LAAQAKEVRGMDNIESAIEDANENAKINGIENAHYEFGTAEKV------------LPKWL 410 Query: 287 IHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILSTTHTIERL 344 ++ +I VDPPR GLD+ + + A H Y+SCNP +L RDL + + +E + Sbjct: 411 HAGFKPNSIVVDPPRVGLDNKLITAILESAPEHFTYVSCNPSTLARDLVRIVEKYDVEYI 470 Query: 345 ALFDQFPYTRHMECGVLLVRK 365 D FP T +E V L RK Sbjct: 471 QSIDMFPQTARVEAVVKLKRK 491 >gi|161508136|ref|YP_001578104.1| methyltransferase [Lactobacillus helveticus DPC 4571] gi|160349125|gb|ABX27799.1| Methyltransferase [Lactobacillus helveticus DPC 4571] Length = 448 Score = 261 bits (667), Expect = 1e-67, Method: Composition-based stats. Identities = 75/384 (19%), Positives = 152/384 (39%), Gaps = 42/384 (10%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPI----HYRMRAEFHIWHDGDDLYH 60 L +Y++QL K ++++++ + +++ + P YR +A+ + L Sbjct: 79 LAHLKYDKQLEFKQKQVKELLSKAHLDQIKVAETLPSPLETGYRNKAQVPVRMVKGQLEI 138 Query: 61 IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-----------LRAKLFQIDY 109 F + + + + ++ F I+ +++ + +R + + +R + Sbjct: 139 GFFRRHSHDLVPLEDFFTNDPEIDRVLLAVRDILREKRIPAYDEEKHQGQVRYLEVRRGT 198 Query: 110 LTSQSDQAIVTLIY-----HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR 164 T +V L H ++D+ + + + + + Sbjct: 199 ATGDMMVVLVCLDRDFPGLHAVVDEIKEIAGV--KSIFLNHNPKRTNVILGEHDYHLWGK 256 Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNF 223 Y+D+++ L + SF Q N+ H+ + + + DL+ + Y G G Sbjct: 257 RYIDDKIG----DLTFEISPQSFFQINSLQTPHLYKLAINQAGLTKDDLIVDAYSGIGTI 312 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 L A++ V VE+ K +V+ A+ N N ++N K ++E E Sbjct: 313 GLSAAKYVKEVRGVEVIKAAVKDAKNNARLNQIHNAKYYVGKAEELMPKWAAE------- 365 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STTHT 340 + IFVDPPR GL + ++YISCNP +L RD+ +L +T Sbjct: 366 -----GLKTDVIFVDPPRKGLTKEFIDAAVKTGPKKVVYISCNPATLVRDMQLLMEAGYT 420 Query: 341 IERLALFDQFPYTRHMECGVLLVR 364 + ++ D FP T H+E +L R Sbjct: 421 TDLVSPVDMFPQTPHVESVTVLER 444 >gi|238917056|ref|YP_002930573.1| hypothetical protein EUBELI_01126 [Eubacterium eligens ATCC 27750] gi|238872416|gb|ACR72126.1| Hypothetical protein EUBELI_01126 [Eubacterium eligens ATCC 27750] Length = 389 Score = 261 bits (666), Expect = 2e-67, Method: Composition-based stats. Identities = 74/384 (19%), Positives = 149/384 (38%), Gaps = 37/384 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDL-YH 60 +Y+ +LA K + ++ + + + PIHYR + + D Sbjct: 22 GCDYAGMKYDNELAVKQKYIEELFGEYVKVDDIVGMYRPIHYRNKVHAVVGLDDSRNVIA 81 Query: 61 IMFDQQTKERMRIDYFMP---GSLLINALMIEMMATIRLEPL--------LRAKLFQIDY 109 +++ + + M I + E++A+ + +P +R L + + Sbjct: 82 GTYEENSHRIVDTSDCMIEDSQCTDIIKDIKELIASFKYQPYDEDAGKGMIRHILLRKGF 141 Query: 110 LTSQSDQAIVTLIYHRLLDDAW----RECAIRLRDALHARKYQIQLIGRANKTKICLDRD 165 T + IVT + + E ++ + + + N+ + + Sbjct: 142 STKEIMLVIVTAGVAFPSKNNFLKVLCEKHPKITTIVQNINDRRTSMVLGNRNIVLKGKG 201 Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNFS 224 Y+++ L +R SF Q N + + + A +++ YCG G Sbjct: 202 YIEDVLC----GCRFRISPTSFYQINHQQTEKLYKKAIQLADISKNDTVIDAYCGIGTIG 257 Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284 +V ++ +V+ VE+ +V A+ N + N++ NV V + +F + Sbjct: 258 IVASKKAGKVIGVELNSEAVSDAKINASINNIKNVTFVNADAGDFLVEYAK--------- 308 Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSIL-STTHTI 341 + + + +DPPRSG + + I+YISC PD+ RD+ +L + + Sbjct: 309 ----NAKADVVIMDPPRSGSTPEFLNSLLKIKPDRIVYISCGPDTQARDIKVLIKGGYKV 364 Query: 342 ERLALFDQFPYTRHMECGVLLVRK 365 FD FP+T H+E +LL RK Sbjct: 365 TACQPFDLFPHTEHVENVILLSRK 388 >gi|295102269|emb|CBK99814.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Faecalibacterium prausnitzii L2-6] Length = 384 Score = 261 bits (666), Expect = 2e-67, Method: Composition-based stats. Identities = 75/387 (19%), Positives = 144/387 (37%), Gaps = 40/387 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDG-DDLYH 60 +L +Y QL +K +R +++ + + P HYR + L Sbjct: 12 GCPMLATEYAAQLKKKEADVRALLVKYGPVSPIRGMETPYHYRNKVISTFAPAACGKLTS 71 Query: 61 IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKLFQIDY 109 ++ +T + + ++ + +++ +M+ + A LLR L + Sbjct: 72 GIYAARTHKVLPVESCLLQDEVLDKVMLAVRAAANACRYQPFNEDKGTGLLRHCLLRRGV 131 Query: 110 LTSQSDQAIVTL--------IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161 T Q +VT + + L + + + + + + K+ Sbjct: 132 ATGQVMVVLVTAQPVLTGAKNFVKALLAEAEKRGVPVTTVVQNYNPRRTSVVLGEDEKVL 191 Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGN 220 + ++ + L Y SF Q N + + A ++ L+ YCG Sbjct: 192 YGKGFILDTLCGK----TYALSPRSFYQVNPVQTAVLYGLAVDAAHLTGKEVVLDAYCGI 247 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G L + +V+ VE+ + +V A N N V N + + + + Sbjct: 248 GTIGLTASDKARQVVGVEVNRDAVRDAIGNAKHNGVKNARFFAADATAWIR--------- 298 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILS-T 337 + + IF+DPPR G A + V A I+Y+SCNP+++ RDL++L+ Sbjct: 299 ---EAADAGQKADVIFMDPPREGSTPAFLESVARMAPKRIVYVSCNPETMARDLALLTQK 355 Query: 338 THTIERLALFDQFPYTRHMECGVLLVR 364 + E D FP++ H E LVR Sbjct: 356 GYRAEGFTPVDMFPHSAHCEVVGSLVR 382 >gi|332200601|gb|EGJ14673.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae GA41317] Length = 451 Score = 261 bits (666), Expect = 2e-67, Method: Composition-based stats. Identities = 69/385 (17%), Positives = 154/385 (40%), Gaps = 40/385 (10%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAF-QVPNLQI----FRSEPIHYRMRAEFHIWHDGDDLY 59 L Y +QL K +++ + + ++++ P+ YR +A+ + L Sbjct: 83 LGHLSYPEQLKFKTKQVKDSLYKIAGIADVEVAETLGMEHPVKYRNKAQVPVRRVNGVLE 142 Query: 60 HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIR-----------LEPLLRAKLFQID 108 F + + M ++ F +I+ +++ + IR L+R + + Sbjct: 143 TGFFRKNSHNLMPLEDFFIQDPVIDQVVVALRDLIRRFDLKPYDEKEQSGLIRNLVVRRG 202 Query: 109 YLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR 164 + + Q +VT + L + + + + Q + + + Sbjct: 203 HYSGQIMVVLVTTRPKVFRVDQLIEQVIKQFPEIVSVMQNINDQNTNAIFGKEWRTLYGQ 262 Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNF 223 DY+ +++ ++ +F Q N + + + + + + D++ + Y G G Sbjct: 263 DYITDQMLGND----FQIAGPAFYQVNTEMAEKLYQTAIDFAELKKDDVIIDAYSGIGTI 318 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 L +A+H V VE+ +VE ++ N N+++N V +++ + ++ Sbjct: 319 GLSVAKHVKEVYGVELIPEAVENSKKNAQLNNISNAHYVCDTAENAMKNWLKD------- 371 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST-THT 340 + I VDPPR GL ++ + I YISCN ++ RD+ + + Sbjct: 372 -----GIQPTVILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMARDIKLYQELGYE 426 Query: 341 IERLALFDQFPYTRHMECGVLLVRK 365 ++++ D FP T H+E LLV++ Sbjct: 427 LKKVQPVDLFPQTHHVEAVSLLVKE 451 >gi|170757395|ref|YP_001782496.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum B1 str. Okra] gi|169122607|gb|ACA46443.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum B1 str. Okra] Length = 458 Score = 261 bits (666), Expect = 2e-67, Method: Composition-based stats. Identities = 85/392 (21%), Positives = 149/392 (38%), Gaps = 47/392 (11%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIF----RSEPIHYRMRAEFHIW--HDG 55 + YE+QL K ++L ++ + ++ E YR + EF G Sbjct: 84 GCSTQYIPYEKQLQIKEEQLLKLFKSKEIKGFDFLGVEKSPEEYEYRNKMEFTFGDMEKG 143 Query: 56 DDLYHIMFDQQTK-ERMRIDYFMPGSLLI-----------NALMIEMMATIRLEPLLRAK 103 DL M + + +D N + + E LR Sbjct: 144 GDLTLGMHVKNRNFSIVTVDKCEIVDRDFRNILTTVVNYFNEKRLPKYRVMSHEGFLRNL 203 Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDA------WRECAIRLRDALHARKYQIQLIGRANK 157 + + T + IVT EC ++ LH + + + +K Sbjct: 204 VIRKAKNTGEILINIVTTSQMEFDFKEIVDMLLKVECKGEIKGILHTINDTLSDVVQVDK 263 Query: 158 TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-EL 216 +I RDY+ E L L ++ +F Q N+ + V ++ +L Sbjct: 264 LEILYGRDYIIEELL----GLKFKIAPEAFFQTNSKGAEKLYSIVKDFLGDASSKVVFDL 319 Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276 YCG G ++A +V+ VE+ + +V+AA N N +NN + + + + +++ Sbjct: 320 YCGTGTIGQIVAPKAKKVIGVELIEEAVKAANENAKLNGLNNCEFIAGDVAKVIKDVKQ- 378 Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSI 334 + I +DPPR G+ + V + I+Y+SCNP +L DL Sbjct: 379 --------------KPDIIILDPPRPGVHPVALEYVVKFEPKEIIYVSCNPKTLVDDLKY 424 Query: 335 L-STTHTIERLALFDQFPYTRHMECGVLLVRK 365 L + +E++ D FP+T H+E VLL RK Sbjct: 425 LIDNGYKLEKVKGMDMFPHTPHVETCVLLQRK 456 >gi|325969983|ref|YP_004246174.1| RNA methyltransferase, TrmA family [Spirochaeta sp. Buddy] gi|324025221|gb|ADY11980.1| RNA methyltransferase, TrmA family [Spirochaeta sp. Buddy] Length = 390 Score = 261 bits (666), Expect = 2e-67, Method: Composition-based stats. Identities = 87/390 (22%), Positives = 151/390 (38%), Gaps = 47/390 (12%) Query: 3 GTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHD-GDDLYHI 61 L+ Y +QL K+ L ++ F +P YR + + +D D L Sbjct: 16 CQLMDYSYSKQLEMKMAYLEDLLGQFGPIAPIQGMDDPTSYRTKVQATFGYDWKDSLVSG 75 Query: 62 MFDQQTKERMRIDYFMPGSLLIN-----------ALMIEMMATIRLEPLLRAKLFQIDYL 110 ++ + T + I M L + I LR L +I Sbjct: 76 IYQEGTHLLVPIRTCMVQHPLADSILKTIRNLATRFQITAYDEDEGYGYLRHVLIKISRK 135 Query: 111 TSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKT---------KIC 161 T+++ +V + D + I H I L +T K+ Sbjct: 136 TNEAMVVLVCAQWPIPSSDNF----IAALKQQHPEITTIALNMNREQTSMVLSEIPIKVL 191 Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGN 220 + Y++E L +L +R +SF Q N + + + D++ + YCG Sbjct: 192 WGKGYIEEELC----SLTFRISHSSFFQVNVEQAQVLYTLAMRMAQIDNDDVVVDAYCGT 247 Query: 221 GNFSLVLARH-FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279 G +L+ A+ +V+ +E + +VE A+ N N++ N + + + Sbjct: 248 GTIALIAAKEGAKQVIGIESNEQAVEDAKLNAERNNLTNAEFICADASA----------- 296 Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST 337 LK++ +F+DPPRSG D+ + A I+YISCNP +L RDL L Sbjct: 297 -HLKEMSKAKQSCDVLFLDPPRSGSDERFLAAAIRLAPKRIVYISCNPKTLERDLRYLLR 355 Query: 338 --THTIERLALFDQFPYTRHMECGVLLVRK 365 + + + D FP+T H+E VL+ R+ Sbjct: 356 FSDYEVSGIQPVDMFPHTEHLETVVLMTRR 385 >gi|315653825|ref|ZP_07906741.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus iners ATCC 55195] gi|315488521|gb|EFU78167.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus iners ATCC 55195] Length = 447 Score = 261 bits (666), Expect = 2e-67, Method: Composition-based stats. Identities = 87/385 (22%), Positives = 153/385 (39%), Gaps = 39/385 (10%) Query: 3 GTLLIDQYEQQLAEKVDRLRQMMLAF---QVPNLQIFRSEPIHYRMRAEFHIWHDGDDLY 59 L +YE+QL K ++ ++ + N + E YR +A+ + L Sbjct: 80 AALAHMKYERQLEFKKQQVVNLLEKVHLNKKVNDCLASPESTAYRNKAQVPVRMVNGQLE 139 Query: 60 HIMFDQQTKERMRIDYFMPGSLLINALMIEMMA-----------TIRLEPLLRAKLFQID 108 F + + + + + F+ I+A ++ + I+ +R + Sbjct: 140 VGFFRKHSHDLVPMTDFLTTDKKIDAAVVAVRDILRKFNVPAYDEIKHNGEVRYLEIRRS 199 Query: 109 YLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD-RDYV 167 Q +V L DA + L D + L +KT + L ++Y+ Sbjct: 200 KANDQLMIVLVCLHKSFKNLDAVVQAIKSLDDVAC-----VILNHNPHKTNVILGEKEYI 254 Query: 168 ---DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNF 223 + + L ++ SF Q N+ + + + D+ ++ Y G G Sbjct: 255 LAGNGEIVDKIGDLSFKISSQSFFQINSLQTPRLYNLAIQKAQLTADDVVIDAYSGIGTI 314 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 L +A+H +VL VEI + +V+ A+ N N +NN + ++E E Sbjct: 315 GLSVAKHVKKVLGVEIVRDAVKDAKKNAILNGINNAEYFEGKAEELMPQWANE------- 367 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGM--VQAYPHILYISCNPDSLCRDLSIL-STTHT 340 + IFVDPPR GL D + + I+YISCNP ++ RDL I + + Sbjct: 368 -----GLKTDVIFVDPPRKGLTDTFIKAAVATSPKKIVYISCNPATMIRDLQIFQAAGYD 422 Query: 341 IERLALFDQFPYTRHMECGVLLVRK 365 + + D FP T H+EC VL+ RK Sbjct: 423 FDCIDPVDMFPQTPHVECVVLMSRK 447 >gi|222151850|ref|YP_002561010.1| tRNA (uracil-5-)-methyltransferase family protein [Macrococcus caseolyticus JCSC5402] gi|222120979|dbj|BAH18314.1| tRNA (uracil-5-)-methyltransferase family protein [Macrococcus caseolyticus JCSC5402] Length = 459 Score = 261 bits (666), Expect = 2e-67, Method: Composition-based stats. Identities = 81/388 (20%), Positives = 142/388 (36%), Gaps = 41/388 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVP------NLQIFRSEPIHYRMRAEFHIWHDG 55 L Y QL K + + + P YR + +F + G Sbjct: 84 GCQLQHLSYRGQLKYKKQIVEDALTKYAPHVKLDKIKDVKGMHNPYTYRNKNQFPVEKTG 143 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGS-----------LLINALMIEMMATIRLEPLLRAKL 104 + ++ + + + + + +++ L I+ E +R + Sbjct: 144 RKVRAGLYKEHSNTLIDLHECIVQDNRTMHTTNEVKKIMSELNIDACKNPMREKGVRHIV 203 Query: 105 FQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR 164 ++ T + VT H D E +RL + L KT I + Sbjct: 204 TRVALATGEIQVVFVTNTRHLKKQDLLAERVMRLAGV-----KSVALNINTEKTSIVMGD 258 Query: 165 DYV----DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELYCG 219 + + +E + + IY SF Q N V + V AA Q ++++ +CG Sbjct: 259 ETIVIAGEETIREQLQDHIYDLSAESFFQLNPRQTVVLYNEVRDAAALTGQENVVDAFCG 318 Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279 G + LA + V ++ + + A YN N +N K + E Sbjct: 319 TGTIGIWLADNAGEVRGMDTNEDGIVNAIYNATLNGADNCKFEVGDASE----------- 367 Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST 337 +L + + I VDPPR+GL +AT+ ++ +Y SCNP +L +DL+ L+ Sbjct: 368 -KLNEWIEEGFYPDVITVDPPRTGLSEATIKLINEIKPKTFVYTSCNPSTLAKDLAHLTK 426 Query: 338 THTIERLALFDQFPYTRHMECGVLLVRK 365 +E + D FP T +E V L RK Sbjct: 427 AFQVEYIQPVDMFPQTAQVEAVVKLTRK 454 >gi|218132971|ref|ZP_03461775.1| hypothetical protein BACPEC_00832 [Bacteroides pectinophilus ATCC 43243] gi|217991844|gb|EEC57848.1| hypothetical protein BACPEC_00832 [Bacteroides pectinophilus ATCC 43243] Length = 405 Score = 261 bits (666), Expect = 2e-67, Method: Composition-based stats. Identities = 82/383 (21%), Positives = 155/383 (40%), Gaps = 34/383 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDG-DDLYH 60 Y++QL +K + ++++ ++ + I +P HYR + D +++ Sbjct: 38 GCAYQGIAYKEQLDKKQEYEQKLLSSYGSVSRIIGMDKPYHYRNKVHAAFGRDRYNNIIC 97 Query: 61 IMFDQQTKERMRIDYFMPGS-------LLINALM----IEMMATIRLEPLLRAKLFQIDY 109 +++ + + + +I L +++ LLR L + + Sbjct: 98 GSYEESSHRIVDNTACLIEDTRAKAIIEVIRRLAGDFGLKIYDERNGTGLLRHVLIRTGH 157 Query: 110 LTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDE 169 +S Q +V L+ + + L + I + I DR Y + Sbjct: 158 ---KSGQILVILVMASTFFPSKKNFIRELIRECPEITSVVININNRRTSMILGDRQYTEY 214 Query: 170 RLTVAGRTL---IYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNFSL 225 TL YR SF Q NA + + A +++ Y G G + Sbjct: 215 GSGYIEDTLCGITYRISPKSFYQVNAVQTELLYTKAIELARLTGSETVIDAYSGIGTIGM 274 Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285 +A H +V++VE +V+ AR N AN+++N+ I + F + M E Sbjct: 275 TVAGHVRKVISVETNTDAVKDARRNAKANNISNIDIYADDAGRFMRRMADNNE------- 327 Query: 286 DIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCRDLSILS-TTHTIE 342 IF+DPPR+G D + +++ P ++YISC P++L RDL++L+ + + Sbjct: 328 -----TCDVIFMDPPRAGSDKVFLNSILKLMPSKVIYISCCPETLARDLAVLARRAYRVA 382 Query: 343 RLALFDQFPYTRHMECGVLLVRK 365 + D FP+T +E V L R+ Sbjct: 383 AIQPVDMFPWTSGIETIVCLERR 405 >gi|167748614|ref|ZP_02420741.1| hypothetical protein ANACAC_03387 [Anaerostipes caccae DSM 14662] gi|167651928|gb|EDR96057.1| hypothetical protein ANACAC_03387 [Anaerostipes caccae DSM 14662] Length = 543 Score = 261 bits (666), Expect = 2e-67, Method: Composition-based stats. Identities = 89/397 (22%), Positives = 148/397 (37%), Gaps = 47/397 (11%) Query: 2 SGTLL-IDQYEQQLAEKVDRLRQMMLAF-QVPNLQIFRSEP--IHYRMRAEFHIW--HDG 55 G YE QL K ++R+++ + + + P YR + EF G Sbjct: 79 GGCFYQTVSYENQLRIKEGQVRELLKDYISDETWEGIKGSPKWWEYRNKMEFSFGDEVKG 138 Query: 56 DDLYHIMFDQQT-KERMRIDYFMPGSLLINALMIEMMA-----------TIRLEPLLRAK 103 L M + T + + I N L+ ++ + E LR Sbjct: 139 GPLALGMHKKNTFHDIVNITDCKIVDNDYNLLVSCVLNYFSESGCDFYHKMSHEGYLRHL 198 Query: 104 LFQIDYLTSQSDQAIVTL----IYHRLLDDAWRECAIR--LRDALHARKYQIQLIGRANK 157 + + IVT + + L + + +R LH + + +A++ Sbjct: 199 VIRRSEANGDLLINIVTTSQADVDMKPLAEEMLSLPLSGSIRGILHTVNDSLADVVQADR 258 Query: 158 TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-EL 216 + D+ E + L ++ SF Q N+ + E + ++ +L Sbjct: 259 METIYGEDFFYEEIL----GLKFKISPFSFFQTNSLGAEVLYETAREYVGETKDKVIFDL 314 Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276 Y G G + +LA +V+ VEI +VEAAR N N ++N + + Sbjct: 315 YSGTGTIAQMLAPVAKKVVGVEIVGEAVEAARENAGLNGLDNCEFIAGDV---------- 364 Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSI 334 LK ID + I +DPPR G+ + + ++YISC P SL RDL I Sbjct: 365 -----LKVIDELEDKPDFIVLDPPRDGIHPKAIQKIIDFGVEKMVYISCKPTSLARDLEI 419 Query: 335 L-STTHTIERLALFDQFPYTRHMECGVLLVRKPSGWH 370 + +ER D FP T H+E LL + S H Sbjct: 420 FREAGYEVERGGCVDMFPSTVHVEVVCLLSKLKSDKH 456 >gi|297583617|ref|YP_003699397.1| TrmA family RNA methyltransferase [Bacillus selenitireducens MLS10] gi|297142074|gb|ADH98831.1| RNA methyltransferase, TrmA family [Bacillus selenitireducens MLS10] Length = 464 Score = 260 bits (665), Expect = 2e-67, Method: Composition-based stats. Identities = 88/382 (23%), Positives = 150/382 (39%), Gaps = 45/382 (11%) Query: 10 YEQQLAEKVDRLRQMML--AFQV--PNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ 65 YE QLA K + ++ + F I EP HYR + EF DG H + Sbjct: 100 YESQLAHKTESVKNGLEEQGFDPGRVKPAIGMKEPWHYRNKMEFTFSTDGKMGLHEQGNF 159 Query: 66 QTKERMRIDYFMPG-SLLINALMIEMMATIRLE----------PLLRAKLFQIDYLTSQS 114 + + ++ + + +++A MI E LLR + + + T + Sbjct: 160 R--GIIPLETCLIAGNEMVDAAMIVSNWAKEFELPGYDKDAHTGLLRHLMVRQSFNTGEI 217 Query: 115 DQAI-VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIG-------RANKTKICLDRDY 166 + T LD A RE R+ K + L ++ +T RDY Sbjct: 218 MLGVFATASPDGELDRAVRELISRIERNAPQVKSVMWLENNDWADRAQSEETHCLFGRDY 277 Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSL 225 + + + +R ++F Q N +++ L K + +++L+CG G FSL Sbjct: 278 IYDEMA----GYRFRLWFDTFFQTNPRQAEVLVDEALKLGKPEAHEKMIDLFCGVGTFSL 333 Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285 A + +EI + S+ +A+ N N + N + +++ M E L Sbjct: 334 PFASRVKALAGIEIVESSIASAKRNAEDNGLVNTTFLAKDARKGIDQMLEEFGHPEL--- 390 Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST-THTIE 342 + +DPPRSG + + I+Y+SCNPD+ D L + +E Sbjct: 391 ---------LMLDPPRSGAGGKVMRRIGRAKPDRIVYVSCNPDTFATDCKELEPFGYQLE 441 Query: 343 RLALFDQFPYTRHMECGVLLVR 364 + D FP+T H+E LL R Sbjct: 442 SVQPVDMFPHTFHVELVALLTR 463 >gi|24380145|ref|NP_722100.1| putative RNA methyltransferase [Streptococcus mutans UA159] gi|50401574|sp|Q8DSK3|Y1779_STRMU RecName: Full=Uncharacterized RNA methyltransferase SMU_1779c gi|24378145|gb|AAN59406.1|AE015005_12 putative RNA methyltransferase [Streptococcus mutans UA159] Length = 459 Score = 260 bits (665), Expect = 2e-67, Method: Composition-based stats. Identities = 77/388 (19%), Positives = 138/388 (35%), Gaps = 39/388 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54 ++ +Y++QL K D L+Q + F+ + I P HYR + +F Sbjct: 81 GCQIMHLRYDKQLDFKKDLLKQALKKFKPQGYETYDIRATIGMEHPQHYRAKLQFQTRKF 140 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPG-----------SLLINALMIEMMATIRLEPLLRAK 103 G + +F +Q+ + I + L++ I + R +R Sbjct: 141 GGSVRAGLFKEQSHHLVDIKDCLIQDELTQKIVNRVCQLLDDYNIPVYDERRHFAGVRTI 200 Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLD--DAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161 + + T+Q VT L+ ++ KT+I Sbjct: 201 MVRKSQATNQVQLIFVTSKEVNLVGIIRDLTGYFPEIKTVAVNFNSSKSSAIYGQKTEIL 260 Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGN 220 D + E + + +F Q N + L A D L++ YCG Sbjct: 261 WGIDSISEEVL----DYSFSLSPRAFYQLNPQQTQVLYHQALQALDVTAEDHLIDAYCGV 316 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G+ L A V ++I ++ A+ N N ++ ++ Sbjct: 317 GSIGLAFANKVKSVRGMDIIPEAITDAKRNAERMGYTNTYYEMGKAENVIPKWYKD---- 372 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTT 338 Y+ + VDPPR+GLD+ + + Y ++Y+SCN +L RDL L Sbjct: 373 --------GYQASALIVDPPRTGLDEKLLKTLLTYQPEKMVYVSCNVSTLARDLVQLVKV 424 Query: 339 HTIERLALFDQFPYTRHMECGVLLVRKP 366 + + + D FP+T E V LV++ Sbjct: 425 YEVNYIQSVDMFPHTARTEAVVKLVKRK 452 >gi|322376702|ref|ZP_08051195.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus sp. M334] gi|321282509|gb|EFX59516.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus sp. M334] Length = 451 Score = 260 bits (665), Expect = 2e-67, Method: Composition-based stats. Identities = 72/382 (18%), Positives = 148/382 (38%), Gaps = 46/382 (12%) Query: 10 YEQQLAEKVDRLRQMMLAFQV-----PNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 Y +QL K +++ + + P+ YR +A+ + L F Sbjct: 88 YPEQLKFKTKQVKDSLYKIAGIADVGVAETLGMEHPVKYRNKAQVPVRRVNGILETGFFH 147 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIR-----------LEPLLRAKLFQIDYLTSQ 113 + + + + I+ F +I+ L++ + +R L+R + + + + Sbjct: 148 KNSHDLLPIEDFFIQDSVIDELVVALRDLLRRYDLKPYDEKEQAGLIRNLVVRRGHYSG- 206 Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKI-------CLDRDY 166 Q +V L+ R + +L +Q I N I +D+ Sbjct: 207 --QIMVILVTTRPKIFRVEQLIEQLVKQFPEIVSVMQNINDKNTNAIFGKEWHTLYGQDF 264 Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSL 225 + +++ Y+ +F Q N + + + + D+ ++ Y G G L Sbjct: 265 ITDQMLGND----YQISGPAFYQVNTKMAEKLYQTAIDFAALKSDDVVIDAYSGIGTIGL 320 Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285 +A+ V VE+ +VE + N N+++N V +++ ++ ++ Sbjct: 321 SVAKLVKEVYGVEVIPEAVENSEKNAQLNNISNAHYVCDTAENAMKSWLKD--------- 371 Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST-THTIE 342 + I VDPPR GL ++ + I YISCN ++ RD+ + + ++ Sbjct: 372 ---GIQPSLILVDPPRKGLTESFIKASSQTGADRIAYISCNVATMARDIKLYRELGYELK 428 Query: 343 RLALFDQFPYTRHMECGVLLVR 364 ++ D FP T H+EC LLV+ Sbjct: 429 KVQPVDLFPQTHHVECVALLVK 450 >gi|225871008|ref|YP_002746955.1| RNA methyltransferase [Streptococcus equi subsp. equi 4047] gi|225700412|emb|CAW94786.1| putative RNA methyltransferase [Streptococcus equi subsp. equi 4047] Length = 455 Score = 260 bits (665), Expect = 2e-67, Method: Composition-based stats. Identities = 81/386 (20%), Positives = 148/386 (38%), Gaps = 38/386 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIF-------RSEPIHYRMRAEFHIWHD 54 ++ Y +QL K D +RQ + F+ + F +EP HYR + +F Sbjct: 81 GCQIMHLAYPKQLYFKDDIIRQALKKFKPKGYEEFEIRHTLGMAEPQHYRAKLQFQTRSF 140 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGSLL---INALMIEMMATIRLEPL-------LRAKL 104 G + +F + + + ID + L I + +++ R+ +R + Sbjct: 141 GGSVKAGLFSEGSHCLVAIDDCLVQDQLTQAIVNHVTQLLDRYRIPIYNERRVAGIRTVM 200 Query: 105 FQIDYLTSQSDQAIVTLIYHRL--LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162 + + Q V+ RL L ++R KT+I Sbjct: 201 VRRAQASDQVQLIFVSSKEVRLAGLIAELTAAFPQIRTVALNINTSKTSDIYGAKTEILW 260 Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNG 221 ++ + E + + + +F Q N + V+ A + + +++ YCG G Sbjct: 261 GQETIQEEVL----SHSFALSPRAFYQLNPTQTEVLYSQVVQALEPTAEEHIIDAYCGVG 316 Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281 + L +A V ++I ++ AR N A +N ++E + E Sbjct: 317 SIGLAVANKVRSVRGMDIIPEAIADARKNAQALGFDNAYYETGKAEELIPSWYAE----- 371 Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILSTTH 339 YR + VDPPR+GLDD + + Y ++Y+SCN +L RDL L + Sbjct: 372 -------GYRADALIVDPPRTGLDDKLLQTILHYQPAKMVYVSCNTSTLARDLVPLVQVY 424 Query: 340 TIERLALFDQFPYTRHMECGVLLVRK 365 + + D FP+T E V L ++ Sbjct: 425 DVIYIQSVDMFPHTARTEAVVKLQKR 450 >gi|317470873|ref|ZP_07930254.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Anaerostipes sp. 3_2_56FAA] gi|316901700|gb|EFV23633.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Anaerostipes sp. 3_2_56FAA] Length = 452 Score = 260 bits (665), Expect = 2e-67, Method: Composition-based stats. Identities = 89/392 (22%), Positives = 146/392 (37%), Gaps = 47/392 (11%) Query: 2 SGTLL-IDQYEQQLAEKVDRLRQMMLAF-QVPNLQIFRSEP--IHYRMRAEFHIW--HDG 55 G YE QL K ++R+++ + + + P YR + EF G Sbjct: 79 GGCFYQTVSYENQLRIKEGQVRELLKDYISDEKWEGIKGSPKWWEYRNKMEFSFGDEVKG 138 Query: 56 DDLYHIMFDQQT-KERMRIDYFMPGSLLIN-----------ALMIEMMATIRLEPLLRAK 103 L M + T + + I N + + E LR Sbjct: 139 GPLALGMHKKNTFHDIVNITDCKIVDNDFNLLVSCALNYFSQSGCDFYHKMSHEGYLRHL 198 Query: 104 LFQIDYLTSQSDQAIVTL----IYHRLLDDAWRECAIR--LRDALHARKYQIQLIGRANK 157 + + + IVT + + L + + +R LH + + +A++ Sbjct: 199 VIRRSDVNGDLLINIVTTSQADVDMKPLAEEMLSLPLSGSIRGILHTVNDSLADVVQADQ 258 Query: 158 TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-EL 216 + D+ E + L ++ SF Q N+ + E + ++ +L Sbjct: 259 METIYGEDFFYEEIL----GLKFKISPFSFFQTNSLGAEVLYETAREYVGETKDKVIFDL 314 Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276 Y G G + +LA +V+ VEI + +VEAAR N N + N + + Sbjct: 315 YSGTGTIAQMLAPVAKKVVGVEIVEEAVEAARENAGFNGLENCEFIAGDV---------- 364 Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSI 334 LK ID + I +DPPR G+ + + ++YISC P SL RDL I Sbjct: 365 -----LKVIDELEDKPDFIVLDPPRDGIHPKAIQKIIDFGVEKMVYISCKPTSLARDLEI 419 Query: 335 L-STTHTIERLALFDQFPYTRHMECGVLLVRK 365 + +ER D FP T H+E VLL RK Sbjct: 420 FREAGYEVERGECVDMFPSTVHVETVVLLERK 451 >gi|297545003|ref|YP_003677305.1| TrmA family RNA methyltransferase [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296842778|gb|ADH61294.1| RNA methyltransferase, TrmA family [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 450 Score = 260 bits (665), Expect = 2e-67, Method: Composition-based stats. Identities = 83/392 (21%), Positives = 156/392 (39%), Gaps = 48/392 (12%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ---IFRSEPIH-YRMRAEFHIWHDGDD 57 T Y +QL K + +++++ + + + I +S H YR + E+ D + Sbjct: 79 GCTYQNVDYLEQLKIKENIVKKLLEKEGIKDYKFLGIVKSPKEHGYRNKMEYTFGKDKEG 138 Query: 58 LYHIMFDQQTK--ERMRIDYFMPGSL------------LINALMIEMMATIRLEPLLRAK 103 + ++ + E + D IN + E LR Sbjct: 139 NAALGLHRKGRFYEVIMTDKCNIVDGDFIKALTLTFEYAINKRLP-FYDKKTHEGFLRHL 197 Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIR------LRDALHARKYQIQLIGRANK 157 + + + + IVT + E L LH + + Sbjct: 198 VVRKASKSREILLNIVTTTQLKHDFTELIEIYKNANFGSHLVGVLHTQNDSWSDAVVCER 257 Query: 158 TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLEL 216 ++ RDY+ E + L ++ SF Q N+ + E V + + +L Sbjct: 258 LEVLYGRDYLIEEIL----DLKFKISAFSFFQTNSYGAEKLYETVREFAGDVSDKIVFDL 313 Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276 Y G G +++A +V+ +E+ + +V +AR N N + N + +Q ++ Sbjct: 314 YSGTGTIGIIMAPMAKKVIGIELVEEAVMSARENAKLNGLKNCTFIAGD---VSQKLKEI 370 Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCRDLSI 334 +E + + VDPPRSG++ + +V+ P ++Y+SCNP+SL RDL + Sbjct: 371 KE------------QPDVVIVDPPRSGINPKALEDIVKFNPQKVVYVSCNPESLARDLKV 418 Query: 335 LST-THTIERLALFDQFPYTRHMECGVLLVRK 365 S + ++++ D FPYT H+E VL+ RK Sbjct: 419 FSEGGYKVDKVKCVDMFPYTYHVETVVLMERK 450 >gi|237733145|ref|ZP_04563626.1| conserved hypothetical protein [Mollicutes bacterium D7] gi|229383827|gb|EEO33918.1| conserved hypothetical protein [Coprobacillus sp. D7] Length = 448 Score = 260 bits (664), Expect = 3e-67, Method: Composition-based stats. Identities = 79/386 (20%), Positives = 153/386 (39%), Gaps = 39/386 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ----VPNLQIFRSEPIHYRMRAEFHIWHDGDD 57 L + Q+ K R++ + N I +P HYR + + + G+ Sbjct: 79 GCQLQHLNPQGQMIYKTKRVKDCLERIGNCKVAVNDCIMMEKPWHYRNKVQMPVGVKGNH 138 Query: 58 LYHIMFDQQTKERMRIDYFMPGSLLINALM---IEMMATIRLEPLLR-AKLFQIDYLTSQ 113 L + Q++ E + + + L N + E+M ++ P + A I ++ ++ Sbjct: 139 LVTGFYKQKSNEIIPCENCYIQNELSNQITNRVKELMEEFKIYPYDKLAHQGNIKHILTK 198 Query: 114 ----SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGR-------ANKTKICL 162 +D+ ++ LI +R + + K IQ I + I Sbjct: 199 HGYHTDEVMLVLISYRNKIKDMDKLVEIITKEFPMIKTVIQNINHRTDNVILGEQEVILF 258 Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNG 221 Y+ + L Y+ SF Q N + + + D +L+ YCG G Sbjct: 259 GNGYIYDTLLGN----KYKISLKSFYQVNPIQVEKLYSKAIEFAGLSKEDIVLDAYCGIG 314 Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281 +L +A++ +V VEI + +++ A+ N N+++N + + ++ + + + Sbjct: 315 TITLSVAKYVKKVYGVEIVETAIDDAKNNAVLNNISNAEFKCSDAGKYMLELVNQDQ--- 371 Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCRDLSILST-T 338 +FVDPPR G + ++QA P I+YISC+ + RD+ L Sbjct: 372 ---------HLDVVFVDPPRKGCSTEFLDNLIQAEPKKIIYISCDVATQARDIKYLQEFG 422 Query: 339 HTIERLALFDQFPYTRHMECGVLLVR 364 + + D FP+T H+E V L + Sbjct: 423 YHADVCQPVDMFPHTTHIENIVRLSK 448 >gi|229552631|ref|ZP_04441356.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus rhamnosus LMS2-1] gi|258540007|ref|YP_003174506.1| RNA methyltransferase [Lactobacillus rhamnosus Lc 705] gi|229314002|gb|EEN79975.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus rhamnosus LMS2-1] gi|257151683|emb|CAR90655.1| RNA methyltransferase [Lactobacillus rhamnosus Lc 705] Length = 455 Score = 260 bits (664), Expect = 3e-67, Method: Composition-based stats. Identities = 76/384 (19%), Positives = 139/384 (36%), Gaps = 47/384 (12%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHDGDDLYHIM 62 Y QL K D + Q + F+ Q I + P HYR +A+F + + + Sbjct: 91 YPAQLRFKRDVVAQALAKFKPLGWQHYDLKPTIGMTHPTHYRNKAQFPVREIDGHVRAGL 150 Query: 63 FDQQTKERMRIDYFMPG-----------SLLINALMIEMMATIRLEPLLRAKLFQIDYLT 111 + + + + +F+ L+ L I + + +++ + + + T Sbjct: 151 YAPGSHRLIPLTHFLTQAPLTMKVVKTLCQLLEDLQIPIYNEKKHAGIVKTLVVRESFST 210 Query: 112 SQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIG-------RANKTKICLDR 164 Q VT I + + + L Q I ++++ + Sbjct: 211 G---QVQVTFITNSAKLPKQAQLITAIAAQLPMVVSIAQNINPSSTSLIWGKESRLLAGQ 267 Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNF 223 Y+ E L+ ++ +F Q N + A + D L++ YCG G Sbjct: 268 PYIQETLS----GRTFQLSPQAFLQLNPKQTEQLYAIAKDALQLAPDDTLIDAYCGIGTV 323 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 + LA + ++ ++ A+ N N NN ++ +E Sbjct: 324 GMSLANRHQSIYGMDTIPEAIADAKDNAKNNGFNNTHYFVGKAETLFPKWLKE------- 376 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCRDLSILSTTHTI 341 + VDPPRSGL+ + ++Q P YISCNP +L RDL L+ + + Sbjct: 377 -----GIHPNAVIVDPPRSGLERPFIDALLQLNPQKFAYISCNPSTLARDLVPLAKHYQV 431 Query: 342 ERLALFDQFPYTRHMECGVLLVRK 365 + + D FP T E V R+ Sbjct: 432 DWIQSIDMFPQTARCEAVVKFTRR 455 >gi|312873424|ref|ZP_07733475.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners LEAF 2052A-d] gi|311091108|gb|EFQ49501.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners LEAF 2052A-d] Length = 447 Score = 260 bits (664), Expect = 3e-67, Method: Composition-based stats. Identities = 85/385 (22%), Positives = 151/385 (39%), Gaps = 39/385 (10%) Query: 3 GTLLIDQYEQQLAEKVDRLRQMMLAF---QVPNLQIFRSEPIHYRMRAEFHIWHDGDDLY 59 L +YE+QL K ++ ++ + N + E YR +A+ + L Sbjct: 80 AALAHMKYERQLEFKKQQVVNLLEKVHLNKKVNDCLASPESTAYRNKAQVPVRMVNGQLE 139 Query: 60 HIMFDQQTKERMRIDYFMPGSLLINALMIEMMA-----------TIRLEPLLRAKLFQID 108 F + + + + + F+ I+A ++ + I+ +R + Sbjct: 140 VGFFRKHSHDLVPMTDFLTTDKKIDAAVVAVRDILRKFNVPAYDEIKHNGEVRYLEIRRS 199 Query: 109 YLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD-RDYV 167 Q +V L DA + L + + L +KT + L ++Y+ Sbjct: 200 KANGQLMIVLVCLHKSFNNLDAVVQAIQSLDNVAC-----VILNHNPHKTNVILGEKEYI 254 Query: 168 ---DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNF 223 + + L ++ SF Q N+ + + + D+ ++ Y G G Sbjct: 255 LAGNGEIVDKIGDLSFKISSQSFFQINSLQTPRLYNLAIQKAQLTADDVVIDAYSGIGTI 314 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 L +A+H +VL VEI + +V+ A+ N N +NN + ++E E Sbjct: 315 GLSVAKHVKKVLGVEIVRDAVKDAKKNAILNGINNAEYFEGKAEELMPQWANE------- 367 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGM--VQAYPHILYISCNPDSLCRDLSIL-STTHT 340 + IFVDPPR GL D + + I+YISCNP ++ RDL I + + Sbjct: 368 -----GLKTDVIFVDPPRKGLTDTFIKAAVATSPKKIVYISCNPATMIRDLQIFQAAGYD 422 Query: 341 IERLALFDQFPYTRHMECGVLLVRK 365 + + D FP T H+E LL RK Sbjct: 423 FDCIDPVDMFPQTPHVETIALLTRK 447 >gi|169350959|ref|ZP_02867897.1| hypothetical protein CLOSPI_01736 [Clostridium spiroforme DSM 1552] gi|169292021|gb|EDS74154.1| hypothetical protein CLOSPI_01736 [Clostridium spiroforme DSM 1552] Length = 449 Score = 260 bits (664), Expect = 3e-67, Method: Composition-based stats. Identities = 77/386 (19%), Positives = 160/386 (41%), Gaps = 41/386 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWHDGDD 57 L E Q+ K R++ + +++ +P +YR + + I G+ Sbjct: 79 GCQLQHLNQEGQMLFKTKRVKDCLERIGNCFVEVNDCLMMEDPWYYRNKVQMPIGVKGNR 138 Query: 58 LYHIMFDQQTKERMRIDYFMPGSLLINALMI---EMMATIRLEPL--------LRAKLFQ 106 L + Q++ E + D + L N + E+M ++ P ++ L + Sbjct: 139 LVTGFYKQKSNEIIPCDECFIQNKLSNQITKRVKELMEKYKIYPYDKLSHQGNIKHILTK 198 Query: 107 IDYLTSQSDQAIVTLIYH-----RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161 Y +++ +++ + +L+ + +E ++ ++ + ++I + +K I Sbjct: 199 HGYHSNEIMLVLISYLDKINNVDKLVAEITKEFSM-IKTVIQNINHRIDNVILGDKEIIL 257 Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGN 220 ++ + L Y+ SF Q N + + + K D+ L+ YCG Sbjct: 258 FGDGFIYDNLLDN----RYKISLKSFYQVNPIQVEKLYQKAIEFAKLSNDDVVLDAYCGI 313 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G +L LA++ +V VEI ++ AR N N + NV+ + ++ Sbjct: 314 GTIALSLAKYVKKVYGVEIVDTAINDARNNAKLNKIENVEFKCDDAGKY----------- 362 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCRDLSILST- 337 + ++ ++ +FVDPPR G + ++QA P I+YISC+ + RD+ L Sbjct: 363 -MIELVNNNIHLDVVFVDPPRKGCSKEFLDYLIQAKPSKIIYISCDVATQARDIKYLQEF 421 Query: 338 THTIERLALFDQFPYTRHMECGVLLV 363 + ++ D FP+T H+E + L Sbjct: 422 NYQVDMCQPVDMFPHTTHIENIIRLE 447 >gi|322383954|ref|ZP_08057684.1| RNA methyltransferase-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321151431|gb|EFX44618.1| RNA methyltransferase-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 536 Score = 260 bits (664), Expect = 3e-67, Method: Composition-based stats. Identities = 78/387 (20%), Positives = 139/387 (35%), Gaps = 39/387 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI------FRSEPIHYRMRAEFHIWHDG 55 L Y QLA K + +R+ + N I P YR +A+ Sbjct: 162 GCQLQHMTYSSQLAAKEEIVRESFRRYLGDNAGILIRPIRGMDHPWDYRNKAQLQTEVRD 221 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGSLLIN-----------ALMIEMMATIRLEPLLRAKL 104 + ++ T + I + +IN L I + + +LR + Sbjct: 222 SRVITGLYTPGTHHLVDISGCLVQDPVINHVMQVMKEIVSELDIPVYNEKKRSGVLRTIV 281 Query: 105 FQIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKI 160 ++ T + ++T L H L A + + + H + +T Sbjct: 282 ARVARSTGKVQLTLITATPFLPKHEKLVSAVHQRMPEVAEIAHNVNPDDTPLVFGERTVH 341 Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYC 218 D ++E L L + +F Q N VH+ ++V A + GD +++ YC Sbjct: 342 LSGEDRLEETLG----PLRFELSPRAFFQLNPSQTVHLYDYVKEA-AALTGDELVVDAYC 396 Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278 G G L LA V +EI +V+ AR N + + N + +++ RE Sbjct: 397 GTGTIGLWLAPLACEVRGIEIIDDAVQDARRNAERSGLGNARFYTGRAEKLLPQWVREGV 456 Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLS-ILST 337 + +D + P ++Y+SCNP +L +D +L Sbjct: 457 RPDVVVVDPPRTGCDA----------ALLRAILAAKPPRLVYVSCNPSTLAKDCRTLLGG 506 Query: 338 THTIERLALFDQFPYTRHMECGVLLVR 364 ++ E + D FP T H+EC + + R Sbjct: 507 GYSAEWVQPVDMFPQTAHVECVIRIQR 533 >gi|325977645|ref|YP_004287361.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|325177573|emb|CBZ47617.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 450 Score = 260 bits (664), Expect = 3e-67, Method: Composition-based stats. Identities = 72/386 (18%), Positives = 139/386 (36%), Gaps = 38/386 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54 ++ +Y++QL K D + Q + F+ + + P HYR + +F Sbjct: 81 GCQIMHLRYDKQLEFKDDLIAQSLKKFKPAGYENYDIRHTLGMEVPYHYRAKLQFQTRSF 140 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----------LRAKL 104 + +F++ + + I + L A++ + + + +R + Sbjct: 141 KGSVKSGLFEEGSHHLVDIRDCLVQDELTQAIINRVTELLEKHHIPIYDERKIAGVRTVM 200 Query: 105 FQIDYLTSQSDQAIVT--LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162 + T+Q +T ++ + ++ KT++ Sbjct: 201 IRKAIATNQVQLIFITSRDVFLAPIIKQLTAEFDMIKGIAVNVNRSKSSEIYGEKTEVIW 260 Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNG 221 + E + + +F Q N + +AA + D +++ YCG G Sbjct: 261 GNADISEEVL----DYQFSLSPRAFYQLNPQQTEVLYGQAVAALDVSENDHVIDAYCGVG 316 Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281 A V ++I ++ A+ N N +++ +E Sbjct: 317 TIGFAFAAKVKSVRGMDIIPEAIADAKKNAQRMGFENTHYEAGRAEDIIPKWYKE----- 371 Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILSTTH 339 YR + VDPPR+GLDD + + Y ++Y+SCN +L RDL LS + Sbjct: 372 -------GYRADALIVDPPRTGLDDKLLNTILKYQPAKMVYVSCNTATLARDLVKLSKVY 424 Query: 340 TIERLALFDQFPYTRHMECGVLLVRK 365 + + D FP+T E V LVRK Sbjct: 425 DVHYIQSVDMFPHTARTEAVVKLVRK 450 >gi|260495077|ref|ZP_05815206.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Fusobacterium sp. 3_1_33] gi|260197520|gb|EEW95038.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Fusobacterium sp. 3_1_33] Length = 457 Score = 260 bits (664), Expect = 3e-67, Method: Composition-based stats. Identities = 78/384 (20%), Positives = 161/384 (41%), Gaps = 34/384 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAF----QVPNLQIFRSEP-IHYRMRAEFHIWHDGD 56 + +YE QL K + ++M + ++ SE +YR + + Sbjct: 86 GCDFAMLKYESQLKYKKLMVEEVMRKIAGLSDIQVAEVLASEDIYNYRNKIIEPFSIYNN 145 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMA-------TIRLEPLLRAKLFQIDY 109 + F +++ E +D + S L N ++ E+ ++ E + L I Sbjct: 146 KIITGFFKRKSHEVFEVDENILNSKLGNRIIKELKEILNRNKISVYNEITHKGLLRNIMI 205 Query: 110 LTSQSDQAIVTLIYHR-LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR---- 164 T+ +++A+V LI + + + ++ +LR+ + K I + + KT + Sbjct: 206 RTNSNNEAMVVLIINSNKITENIKKLLFKLRENISEIK-SIYISLNSKKTNTVIGEKNIL 264 Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNF 223 Y ++ + + + SF Q N + + ++ I +++ Y G G Sbjct: 265 IYGEKSIKENINGIEFHISPTSFFQINVKQAKRLYDIAISFFDDIDNKYIVDAYSGTGTI 324 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 +++A+ +V A+EI K + E N + N+K + + ++ L Sbjct: 325 GMIMAKKAKKVYAIEIVKSASEDGEKTAKENGIENIKFINGAVEK------------ELV 372 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST-THT 340 + ++ + TI DPPR GL+ + + V ++YISCNP + RD+ + S + Sbjct: 373 KLINNNQKIDTIIFDPPRKGLEASIIDKVAELNLKEVVYISCNPSTFARDVKLFSEKGYV 432 Query: 341 IERLALFDQFPYTRHMECGVLLVR 364 +++L D FP T H+EC L+ + Sbjct: 433 LKKLQAVDMFPQTSHIECVGLIEK 456 >gi|262282939|ref|ZP_06060706.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus sp. 2_1_36FAA] gi|262261191|gb|EEY79890.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus sp. 2_1_36FAA] Length = 480 Score = 260 bits (664), Expect = 3e-67, Method: Composition-based stats. Identities = 71/379 (18%), Positives = 150/379 (39%), Gaps = 40/379 (10%) Query: 10 YEQQLAEKVDRLRQMMLAF-QVPNLQI----FRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 Y +QL K +++ + + ++++ P+ YR +A+ + L F Sbjct: 112 YPEQLKFKTKQVKDSLYKIAGITDVEVAETLGMVNPVKYRNKAQVPVRRVNGVLETGFFR 171 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIR-----------LEPLLRAKLFQIDYLTSQ 113 + + + M ++ F +I+ +++ + +R L+R + + + + Q Sbjct: 172 KNSHDLMPLEDFFIQDPVIDQVVVALRDLLRRFDLKPYDEKEQSGLIRNLVVRRGHYSGQ 231 Query: 114 SDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDE 169 +VT + L D + + + Q + + +DY+ + Sbjct: 232 IMVILVTTRPKVFRVEQLIDQVIKQFPEIVSVIQNINDQNTNAIFGKEWRTLYGQDYITD 291 Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFSLVLA 228 ++ ++ +F Q N + + + + D++ + Y G G L +A Sbjct: 292 QMLGND----FQIAGPAFYQVNTQMAEKLYQTAIDFAGLKVDDVVVDAYSGIGTIGLSVA 347 Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288 +H V VE+ +VE ++ N A N + N V +++ + +E Sbjct: 348 KHVKEVYGVEVIPEAVENSKKNAAINGITNSHYVCDTAENAMKNWLKE------------ 395 Query: 289 SYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST-THTIERLA 345 + I VDPPR GL ++ + I YISCN ++ RD+ + + ++++ Sbjct: 396 GIQPSLILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMARDIKLYQELGYELKKVQ 455 Query: 346 LFDQFPYTRHMECGVLLVR 364 D FP T H+E LLVR Sbjct: 456 PVDLFPQTHHVEAVSLLVR 474 >gi|327389388|gb|EGE87733.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae GA04375] Length = 451 Score = 260 bits (664), Expect = 3e-67, Method: Composition-based stats. Identities = 70/385 (18%), Positives = 155/385 (40%), Gaps = 40/385 (10%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAF-QVPNLQI----FRSEPIHYRMRAEFHIWHDGDDLY 59 L Y +QL K +++ + + ++++ P+ YR +A+ + L Sbjct: 83 LGHLSYPEQLKFKTKQVKDSLYKIAGIADVEVAETLGMEHPVKYRNKAQVPVRRVNGVLE 142 Query: 60 HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIR-----------LEPLLRAKLFQID 108 F + + + M ++ F +I+ +++ + +R L+R + + Sbjct: 143 TGFFRKNSHDLMPLEDFFIQDPVIDQVVVALRDLLRRFDLKPYDEKEQSGLIRNLVVRRG 202 Query: 109 YLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR 164 + + Q +VT + L + + + + Q + + + Sbjct: 203 HYSGQIMVVLVTTRPKVFRVDQLIEQVIKQFPEIVSVMQNINDQNTNAIFGKEWRTLYGQ 262 Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNF 223 DY+ +++ ++ +F Q N + + + + + + D+ ++ Y G G Sbjct: 263 DYITDQMLGND----FQIAGPAFYQVNTEMAEKLYQTTIDFAELKEDDVVIDAYSGIGTI 318 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 L +A+H V VE+ +VE ++ N NH++N V +++ + +E Sbjct: 319 GLSVAKHVKEVYGVEVIPEAVENSKKNAQLNHISNTHYVCDTAENAMKNWLKE------- 371 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST-THT 340 + I VDPPR GL ++ + I YISCN ++ RD+ + + Sbjct: 372 -----GIQPTVILVDPPRKGLTESFIKASSQTGADRIAYISCNVATMARDIKLYQELGYE 426 Query: 341 IERLALFDQFPYTRHMECGVLLVRK 365 ++++ D FP T H+E LLV++ Sbjct: 427 LKKVQPVDLFPQTHHVEAVSLLVKE 451 >gi|153931008|ref|YP_001385124.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum A str. ATCC 19397] gi|153937829|ref|YP_001388593.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum A str. Hall] gi|152927052|gb|ABS32552.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum A str. ATCC 19397] gi|152933743|gb|ABS39242.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum A str. Hall] Length = 450 Score = 260 bits (664), Expect = 3e-67, Method: Composition-based stats. Identities = 82/391 (20%), Positives = 147/391 (37%), Gaps = 47/391 (12%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIF----RSEPIHYRMRAEFHIW--HDG 55 + YE+QL K ++L ++ + ++ E YR + EF G Sbjct: 79 GCSTQYIPYEKQLQIKEEQLLKLFKSKEIKGFDFLGVEKSPEEYEYRNKMEFTFGDMEKG 138 Query: 56 DDLYHIMFDQQTK-ERMRIDYFMPGSLLI-----------NALMIEMMATIRLEPLLRAK 103 DL M + + +D N + + E LR Sbjct: 139 GDLTLGMHVKNRNFSIVTVDNCEIVDRDFRNILTTVVNYFNEKRLPKYRVMSHEGFLRNL 198 Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDA------WRECAIRLRDALHARKYQIQLIGRANK 157 + + T + IVT EC ++ LH + + + +K Sbjct: 199 VIRKAKNTGEILVNIVTTSQMEFDFKEIVDMLLKVECKGEIKGILHTINDTLSDVVQVDK 258 Query: 158 TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-EL 216 +I RDY+ E L L ++ +F Q N+ + V ++ +L Sbjct: 259 LEILYGRDYIIEELL----GLKFKIAPEAFFQTNSKGAEKLYSIVKDFLGDASSKVVFDL 314 Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276 YCG G ++A +V+ VE+ + +V+AA N N +NN + + + + +++ Sbjct: 315 YCGTGTIGQIVAPKAKKVIGVELIEEAVKAANENAKLNGLNNCEFIAGDVAKVIKDVKQ- 373 Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSI 334 + I +DPPR G+ + V + I+Y+SCNP +L DL Sbjct: 374 --------------KPDIIILDPPRPGVHPVALEYVVKFEPKEIIYVSCNPKTLVDDLKY 419 Query: 335 L-STTHTIERLALFDQFPYTRHMECGVLLVR 364 L + +E++ D FP+T H+E V L + Sbjct: 420 LIDNGYKLEKVKGMDMFPHTPHVETVVKLSK 450 >gi|306830729|ref|ZP_07463893.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|304427076|gb|EFM30184.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus gallolyticus subsp. gallolyticus TX20005] Length = 450 Score = 260 bits (664), Expect = 3e-67, Method: Composition-based stats. Identities = 72/386 (18%), Positives = 139/386 (36%), Gaps = 38/386 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54 ++ +Y++QL K D + Q + F+ + + P HYR + +F Sbjct: 81 GCQIMHLRYDKQLEFKDDLIAQSLKKFKPAGYENYDIRHTLGMEVPYHYRAKLQFQTRSF 140 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----------LRAKL 104 + +F++ + + I + L A++ + + + +R + Sbjct: 141 KGSVKAGLFEEGSHRLVDIRDCLVQDELTQAIINRVTELLEKHHIPIYDERKIAGVRTVM 200 Query: 105 FQIDYLTSQSDQAIVT--LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162 + T+Q +T ++ + ++ KT++ Sbjct: 201 IRKAIATNQVQLIFITSRDVFLAPVIKQLTAEFDMIKGIAVNVNRSKSSEIYGEKTEVIW 260 Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNG 221 + E + + +F Q N + +AA + D +++ YCG G Sbjct: 261 GNADISEEVL----DYQFSLSPRAFYQLNPQQTEVLYGQAVAALDVSENDHVIDAYCGVG 316 Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281 A V ++I ++ A+ N N +++ +E Sbjct: 317 TIGFAFAAKVKSVRGMDIIPEAIADAKKNAQRMGFENTHYEAGRAEDIIPKWYKE----- 371 Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILSTTH 339 YR + VDPPR+GLDD + + Y ++Y+SCN +L RDL LS + Sbjct: 372 -------GYRADALIVDPPRTGLDDKLLNTILKYQPAKMVYVSCNTATLARDLVKLSKVY 424 Query: 340 TIERLALFDQFPYTRHMECGVLLVRK 365 + + D FP+T E V LVRK Sbjct: 425 DVHYIQSVDMFPHTARTEAVVKLVRK 450 >gi|309804713|ref|ZP_07698778.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners LactinV 09V1-c] gi|309808903|ref|ZP_07702784.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners LactinV 01V1-a] gi|325911406|ref|ZP_08173818.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners UPII 143-D] gi|308166105|gb|EFO68323.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners LactinV 09V1-c] gi|308167901|gb|EFO70038.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners LactinV 01V1-a] gi|325476756|gb|EGC79910.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners UPII 143-D] Length = 449 Score = 259 bits (663), Expect = 3e-67, Method: Composition-based stats. Identities = 85/384 (22%), Positives = 152/384 (39%), Gaps = 39/384 (10%) Query: 3 GTLLIDQYEQQLAEKVDRLRQMMLAF---QVPNLQIFRSEPIHYRMRAEFHIWHDGDDLY 59 L +YE+QL K ++ ++ + N + E YR +A+ + L Sbjct: 80 AALAHMKYERQLEFKKQQVVNLLEKVHLNKKVNDCLASPESTAYRNKAQVPVRMVNGQLE 139 Query: 60 HIMFDQQTKERMRIDYFMPGSLLINALMIEMMA-----------TIRLEPLLRAKLFQID 108 F + + + + + F+ I+A ++ + I+ +R + Sbjct: 140 VGFFRKHSHDLVPMTDFLTTDKKIDAAVVAVRDILRKFNVPAYDEIKHNGEVRYLEIRRS 199 Query: 109 YLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD-RDYV 167 Q +V L DA + L + + L +KT + L ++Y+ Sbjct: 200 KANGQLMIVLVCLHKSFKNLDAVVQAIQSLDNVAC-----VILNHNPHKTNVILGEKEYI 254 Query: 168 ---DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNF 223 + + L ++ SF Q N+ + + + D+ ++ Y G G Sbjct: 255 LAGNGEIVDKIGDLSFKISSQSFFQINSLQTPRLYNLAIQKAQLTSDDVVIDAYSGIGTI 314 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 L +A+H +VL VEI + +V+ A+ N N +NN + ++E E Sbjct: 315 GLSVAKHVKKVLGVEIVRDAVKDAKKNAILNGINNAEYFEGKAEELMPQWANE------- 367 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGM--VQAYPHILYISCNPDSLCRDLSIL-STTHT 340 + IFVDPPR GL D + + I+YISCNP ++ RDL I + + Sbjct: 368 -----GLKTDVIFVDPPRKGLTDTFIKAAVATSPKKIVYISCNPATMIRDLQIFQAAGYD 422 Query: 341 IERLALFDQFPYTRHMECGVLLVR 364 + + D FP T H+EC VLL + Sbjct: 423 FDCIDPVDMFPQTPHVECVVLLTK 446 >gi|309809377|ref|ZP_07703239.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners SPIN 2503V10-D] gi|308170288|gb|EFO72319.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners SPIN 2503V10-D] Length = 449 Score = 259 bits (663), Expect = 3e-67, Method: Composition-based stats. Identities = 85/384 (22%), Positives = 152/384 (39%), Gaps = 39/384 (10%) Query: 3 GTLLIDQYEQQLAEKVDRLRQMMLAF---QVPNLQIFRSEPIHYRMRAEFHIWHDGDDLY 59 L +YE+QL K ++ ++ + N + E YR +A+ + L Sbjct: 80 AALAHMKYERQLEFKKQQVVNLLEKVHLNKKVNDCLASPESTAYRNKAQVPVRMVNGQLE 139 Query: 60 HIMFDQQTKERMRIDYFMPGSLLINALMIEMMA-----------TIRLEPLLRAKLFQID 108 F + + + + + F+ I+A ++ + I+ +R + Sbjct: 140 VGFFRKHSHDLVPMTDFLTTDKKIDAAVVAVRDILRKFNVPAYDEIKHNGEVRYLEIRRS 199 Query: 109 YLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD-RDYV 167 Q +V L DA + L + + L +KT + L ++Y+ Sbjct: 200 KANGQLMIVLVCLHKSFKNLDAVVQAIQSLDNVAC-----VILNHNPHKTNVILGEKEYI 254 Query: 168 ---DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNF 223 + + L ++ SF Q N+ + + + D+ ++ Y G G Sbjct: 255 LAGNGEIVDKIGDLSFKISSQSFFQINSLQTPRLYNLAIQKAQLTSDDVVIDAYSGIGTI 314 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 L +A+H +VL VEI + +V+ A+ N N +NN + ++E E Sbjct: 315 GLSVAKHVKKVLGVEIVRDAVKDAKKNAILNGINNAEYFEGKAEELMPQWANE------- 367 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGM--VQAYPHILYISCNPDSLCRDLSIL-STTHT 340 + IFVDPPR GL D + + I+YISCNP ++ RDL I + + Sbjct: 368 -----GLKTDVIFVDPPRKGLTDTFIKAAVATSPKKIVYISCNPATMIRDLQIFQAAGYD 422 Query: 341 IERLALFDQFPYTRHMECGVLLVR 364 + + D FP T H+EC VLL + Sbjct: 423 FDCIDPVDMFPQTPHVECVVLLTK 446 >gi|306830030|ref|ZP_07463216.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus mitis ATCC 6249] gi|304427743|gb|EFM30837.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus mitis ATCC 6249] Length = 453 Score = 259 bits (663), Expect = 3e-67, Method: Composition-based stats. Identities = 80/389 (20%), Positives = 150/389 (38%), Gaps = 40/389 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54 ++ Y++QL K D L Q + F + I SEP +YR + +F Sbjct: 81 GCQIMHLHYDKQLEFKTDLLHQALKKFAPAGYENYEIRPTIGMSEPKYYRAKLQFQTRKF 140 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----------LRAKL 104 + + ++ Q + + + + + + + + +R + Sbjct: 141 NNQVKAGLYAQNSHYLVELKDCLVQDKETQVIANRIAELLTYHQIPITDERKTLGVRTIM 200 Query: 105 FQIDYLTSQSDQAIVT---LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161 + T Q IVT L ++L+ D ++ + A++ + I KT+I Sbjct: 201 VRRARKTGQVQIIIVTNRQLNLNQLVQDLVKDFPEVVTVAVNTNTAKTSEI-YGEKTEII 259 Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGN 220 ++ + E + + +F Q N + E V A + L++ YCG Sbjct: 260 WGQESIQEGVL----DYEFSLSPRAFYQLNPEQTEILYSEAVKALDVSEEDHLIDAYCGV 315 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G A+ + ++I ++E A+ N +N +++E +E Sbjct: 316 GTIGFAFAKKVKSLRGMDIIPEAIEDAKRNAKKMGFDNTHYEAGTAEEIIPRWYQE---- 371 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTT 338 YR + VDPPR+GLDD + + Y ++Y+SCN +L RDL L Sbjct: 372 --------GYRADALIVDPPRTGLDDKLLDTILTYVPEKMVYVSCNVSTLARDLVKLVKV 423 Query: 339 HTIERLALFDQFPYTRHMECGVLLVRKPS 367 + + + D FP+T E V LV++ S Sbjct: 424 YDLHYIQSVDMFPHTARTEAVVKLVKRKS 452 >gi|322387316|ref|ZP_08060926.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus infantis ATCC 700779] gi|321141845|gb|EFX37340.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus infantis ATCC 700779] Length = 455 Score = 259 bits (663), Expect = 3e-67, Method: Composition-based stats. Identities = 80/389 (20%), Positives = 145/389 (37%), Gaps = 40/389 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54 ++ Y++QL K D L Q + F + I EP +YR + +F Sbjct: 81 GCQIMHLHYDKQLEFKTDLLHQALKKFAPAGYENYEIRPTIGMQEPKYYRAKLQFQTRKF 140 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----------LRAKL 104 + ++ Q + + + + A+ + + + +R + Sbjct: 141 KGQVKAGLYAQNSHYLVELKDCLVQDKETQAIANRIAELLTYHQIPITDDRKILGVRTIM 200 Query: 105 FQIDYLTSQSDQAIVT---LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161 + T Q IVT L + + D ++ + A++ + I +KT+I Sbjct: 201 VRRARKTGQVQIIIVTNRQLNLTQFVKDLVKDYPEVVTVAVNTNTAKTSEI-YGDKTEII 259 Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGN 220 +D + E + + +F Q N + E V A L++ YCG Sbjct: 260 WGQDSIREGVL----DYEFSLSPRAFYQLNPEQTEILYSEAVKALDVNENDHLIDAYCGV 315 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G A+ + ++I ++E A+ N N +++E +E Sbjct: 316 GTIGFAFAKKVKSLRGMDIIPEAIEDAKENAKRMGYTNTHYEAGTAEEIIPRWYKE---- 371 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILSTT 338 YR + VDPPR+GLDD + + A ++YISCN +L RDL L Sbjct: 372 --------GYRADALIVDPPRTGLDDKLLDTIVKYAPEKMVYISCNVSTLARDLVRLVEV 423 Query: 339 HTIERLALFDQFPYTRHMECGVLLVRKPS 367 + + + D FP+T E V L ++ S Sbjct: 424 YDLHYIQSVDMFPHTARTEAVVKLTKRKS 452 >gi|270290024|ref|ZP_06196250.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Pediococcus acidilactici 7_4] gi|270281561|gb|EFA27393.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Pediococcus acidilactici 7_4] Length = 490 Score = 259 bits (663), Expect = 3e-67, Method: Composition-based stats. Identities = 78/384 (20%), Positives = 141/384 (36%), Gaps = 42/384 (10%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHDGDDLY-HI 61 Y QL K D +RQ + F+ Q I +P+ YR +A+F I D Sbjct: 123 YPAQLEFKRDVIRQALTKFRPAGYQDYELRPTIGMDDPVAYRNKAQFQIRRLADGRIGAG 182 Query: 62 MFDQQTKERMRIDYFMPGSLLINAL-----------MIEMMATIRLEPLLRAKLFQIDYL 110 ++ + T E + + L + +++ E L+ + ++ Sbjct: 183 LYKEGTHELVDLATCSVQHPLTMKIIRAAVALFTKYDVDIYDEHHNEGELKTLVVRVAQA 242 Query: 111 TSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY 166 T ++ +T L + + D + + Q + ++T +D Sbjct: 243 TQETQVVFITNTPQLSHATEIIDELSTQFPEIVSFMQNINPGRQSLIWGDQTVKLRGQDT 302 Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELYCGNGNFSL 225 + E L L + +F Q N V + + A + +++ Y G G L Sbjct: 303 IREEL----DGLSFNLSARAFFQLNPQQTVTLYDEARKALSITPNSRIVDAYSGVGTIGL 358 Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285 LA + ++ ++ A N N + N + S+++ +E Sbjct: 359 SLASEAKEIRGMDTIADAITDANENARLNSITNARYEVGSAEKLLPKWLKE--------- 409 Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILSTTHTIER 343 ++ I VDPPR GLD + + A H Y+SCNP +L RDL L + +E Sbjct: 410 ---GFQPDGIVVDPPRVGLDRRLIDAILKSAPKHFAYVSCNPSTLARDLVPLVKKYRVEY 466 Query: 344 LALFDQFPYTRHMECGVLLVRKPS 367 + D FP T +E V L + + Sbjct: 467 IQSIDMFPQTARVEAVVKLTLRNA 490 >gi|315611699|ref|ZP_07886621.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis ATCC 49296] gi|315316114|gb|EFU64144.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis ATCC 49296] Length = 453 Score = 259 bits (663), Expect = 3e-67, Method: Composition-based stats. Identities = 80/387 (20%), Positives = 151/387 (39%), Gaps = 40/387 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54 ++ Y++QL K D LRQ + F + I EP +YR + +F Sbjct: 81 GCQIMHLHYDKQLEFKTDLLRQALKKFAPAGYENYEIRPTIGMQEPKYYRAKLQFQTRKF 140 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----------LRAKL 104 + + +++Q + + + + + + + + +R + Sbjct: 141 KNQVKAGLYEQNSHYLVELKDCLVQDKETQVIANRLAELLTYHQIPITDERKTLGVRTIM 200 Query: 105 FQIDYLTSQSDQAIVT---LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161 + T Q IVT L ++L+ D ++ + A++ + I KT+I Sbjct: 201 VRRARKTGQVQIIIVTNRQLNLNQLVKDLVKDFPEVVTVAVNTNTAKTSEI-YGEKTEII 259 Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGN 220 ++ + E + + +F Q N + E V A + L++ YCG Sbjct: 260 WGQESIQEGVL----DYEFSLSPRAFYQLNPEQTEILYSEAVKALDVSKEDHLIDAYCGV 315 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G A+ + ++I ++E A+ N +N +++E +E Sbjct: 316 GTIGFAFAKKVKSLRGMDIIPEAIEDAKRNAQKMGFDNTHYEAGTAEEIIPRWYKE---- 371 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTT 338 YR + VDPPR+GLDD + + Y ++Y+SCN +L RDL L Sbjct: 372 --------GYRADALIVDPPRTGLDDKLLDTILTYVPEKMVYVSCNVSTLARDLVKLVKV 423 Query: 339 HTIERLALFDQFPYTRHMECGVLLVRK 365 + ++ + D FP+T E V LV+K Sbjct: 424 YDLQYIQSVDMFPHTARTEAVVKLVKK 450 >gi|226950293|ref|YP_002805384.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum A2 str. Kyoto] gi|226843642|gb|ACO86308.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum A2 str. Kyoto] Length = 450 Score = 259 bits (663), Expect = 3e-67, Method: Composition-based stats. Identities = 83/391 (21%), Positives = 147/391 (37%), Gaps = 47/391 (12%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIF----RSEPIHYRMRAEFHIW--HDG 55 + YE+QL K ++L ++ + ++ E YR + EF G Sbjct: 79 GCSTQYIPYEKQLQIKEEQLLKLFKSKEIKGFDFLGVEKSPEEYEYRNKMEFTFGDMEKG 138 Query: 56 DDLYHIMFDQQTK-ERMRIDYFMPGSLLI-----------NALMIEMMATIRLEPLLRAK 103 DL M + + +D N + + E LR Sbjct: 139 GDLTLGMHVKNRNFSIVTVDKCEIVDRDFRNILTTVVNYFNEKRLPKYRVMSHEGFLRNL 198 Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDA------WRECAIRLRDALHARKYQIQLIGRANK 157 + + T + IVT EC ++ LH + + + +K Sbjct: 199 VIRKAKNTGEILINIVTTSQMEFDFKEIVDMLLKVECKGEIKGILHTINDTLSDVVQVDK 258 Query: 158 TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LEL 216 +I RDY+ E L L ++ +F Q N+ + V + L+L Sbjct: 259 LEILYGRDYIIEELL----GLKFKIAPEAFFQTNSKGAEKLYSIVKDFLGDASSKVVLDL 314 Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276 YCG G ++A +V+ VE+ + +V+AA N N +NN + + + + +++ Sbjct: 315 YCGTGTIGQIVAPKAKKVIGVELIEEAVKAANENAKLNGLNNCEFIAGDVAKVIKDVKQ- 373 Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSI 334 + I +DPPR G+ + V + I+Y+SCNP +L DL Sbjct: 374 --------------KPDIIILDPPRPGVHPVALEYVVKFEPKEIIYVSCNPKTLVDDLKY 419 Query: 335 L-STTHTIERLALFDQFPYTRHMECGVLLVR 364 L + +E++ D FP+T H+E V L + Sbjct: 420 LIDNGYKLEKVKGMDMFPHTPHVETVVKLSK 450 >gi|167760470|ref|ZP_02432597.1| hypothetical protein CLOSCI_02844 [Clostridium scindens ATCC 35704] gi|167661836|gb|EDS05966.1| hypothetical protein CLOSCI_02844 [Clostridium scindens ATCC 35704] Length = 460 Score = 259 bits (663), Expect = 4e-67, Method: Composition-based stats. Identities = 87/395 (22%), Positives = 148/395 (37%), Gaps = 51/395 (12%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL--QIFRSEP--IHYRMRAEFHIW--HDG 55 T YE+QL K +++ MM + + P YR + EF + Sbjct: 81 GCTYQNLPYEEQLKMKEAQVKAMMDEAVEGDYCWEGIMPSPVKEAYRNKMEFSFGDEYKD 140 Query: 56 DDLYHIMFDQQT-KERMRIDYFMPGSLLINAL-----------MIEMMATIRLEPLLRAK 103 L M + + + + + + + +R R Sbjct: 141 GPLALGMHKRGSFHDIVNVMECRIVDEDYRKILACTLGFARETGLPYYHRMRHIGYFRHL 200 Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAI----------RLRDALHARKYQIQLIG 153 L + T + IVT H +++A + ++ LH + + + Sbjct: 201 LVRKAVKTGEILIDIVTTTEHNFIEEAGGNQWVSQLLSLELDGKIAGILHTKNDSLADVV 260 Query: 154 RANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL 213 + + T+I +D+ E L L ++ SF Q N+ + E + + Sbjct: 261 KDDGTEILYGQDFFYEELL----GLKFKITPFSFFQTNSLGAEVLYEKTREYIGETKDKV 316 Query: 214 L-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 L +LY G G + ++A +V+ VEI + +VEAAR N A N ++N Sbjct: 317 LFDLYSGTGTIAQIVAPVAKKVVGVEIVEEAVEAARENAALNGLDNCTFWAGDV------ 370 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCR 330 LK ID I +DPPR G+ + + ++YI+C P SL R Sbjct: 371 ---------LKVIDELGEVPDVIILDPPRDGVHPKALEKITNFGVERMVYIACKPTSLAR 421 Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364 DL +L + +ER+ D FP T H+E VL+ R Sbjct: 422 DLEMLQGRGYRVERMGCVDLFPGTVHVETVVLMSR 456 >gi|160933690|ref|ZP_02081078.1| hypothetical protein CLOLEP_02551 [Clostridium leptum DSM 753] gi|156867567|gb|EDO60939.1| hypothetical protein CLOLEP_02551 [Clostridium leptum DSM 753] Length = 460 Score = 259 bits (663), Expect = 4e-67, Method: Composition-based stats. Identities = 81/385 (21%), Positives = 143/385 (37%), Gaps = 35/385 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56 + Y+ +L K R+ + + ++ YR +A+ I D D Sbjct: 82 GCSFRHISYKAELEAKRRRVEDAIQRIGGFDRFPVPPVVGAAKINRYRNKAQLPIGADRD 141 Query: 57 DL-YHIMFDQQTKERMRIDYFMPGSLL-------INALMIEMMATIRLEPLLRAKLFQID 108 + + + I+ + + M E + E L + Sbjct: 142 GRGIMGFYALHSHRIVPIEDCPLQPKMFAQAVASVKQWMEEYKVPVYHEESHSGLLRHLY 201 Query: 109 YL-TSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD-- 165 S + +V L+ + E RLR+ L + + R KT + L + Sbjct: 202 LREASATGALMVCLVGNGDELPHSGELVKRLREDLPCLESVVFNSNR-EKTNVILGKRCQ 260 Query: 166 --YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGN 222 + + + L + SF Q N + + D +L+LYCG G Sbjct: 261 ALWGKDGIVDHLCGLSFFLSPLSFYQVNRDQAEILYRLAGEYASLQKEDTVLDLYCGTGT 320 Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282 + +A +V+ VE+ ++E A+ N N V N++ + S + Q +R+ E Sbjct: 321 IGMTMASKAGKVIGVEVVPEAIEDAKANAVRNGVKNIEFICGDSAQAVQMLRKRGE---- 376 Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STTH 339 R + VDPPR G + + A I+Y+SC+P +L RDL +L + Sbjct: 377 --------RPTVVVVDPPRKGCGLPVLEHIVEIAPRKIIYVSCDPATLARDLKLLVKAGY 428 Query: 340 TIERLALFDQFPYTRHMECGVLLVR 364 ++ LA D FP T H+E LL + Sbjct: 429 CLQTLAPVDLFPRTAHVETVALLEK 453 >gi|28211569|ref|NP_782513.1| tRNA (uracil-5-) -methyltransferase [Clostridium tetani E88] gi|50401760|sp|Q892Z2|Y1941_CLOTE RecName: Full=Uncharacterized RNA methyltransferase CTC_01941 gi|28204010|gb|AAO36450.1| tRNA (uracil-5-) -methyltransferase [Clostridium tetani E88] Length = 456 Score = 259 bits (663), Expect = 4e-67, Method: Composition-based stats. Identities = 84/396 (21%), Positives = 152/396 (38%), Gaps = 50/396 (12%) Query: 2 SGTLLID-QYEQQLAEKVDRLRQMMLA-----FQVPNLQIFRSEPIHYRMRAEFHIW--H 53 G D YE+QL K + ++ F ++ + YR + EF Sbjct: 80 GGCAHQDIPYEKQLEIKQHEILELFKKANLDGFDFLPIE-GSPKQYEYRNKMEFTFGDLK 138 Query: 54 DGDDLYHIMFDQQ-TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYL-- 110 G +L M + + + D ++ + R + L ++ + Sbjct: 139 KGGELNLGMHAKGMSFGIISADECKIVDEDYRNILNATLNYFREKQLPHYRIMAREGYLR 198 Query: 111 ------TSQSDQAIVTLIYHRLLDDAWRECAI---------RLRDALHARKYQIQLIGRA 155 + + +V L+ +D E L LH + + + Sbjct: 199 NLVIRKAENTGEVLVNLVTTSQIDFNLDEYTEIIKSINYKGNLVGILHTINDSLSDVVQC 258 Query: 156 NKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LL 214 +K I RDY+ E L L ++ SF Q N+ + V + + Sbjct: 259 DKLNILYGRDYIIEDLL----GLKFKITPLSFFQTNSKGAEKLYSIVRDFIGESKSKTVF 314 Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274 +LYCG G ++A +V+ +E+ + +VE+AR N N++NN + + + + ++ Sbjct: 315 DLYCGTGTIGQIVAPEAKKVIGIELIEEAVESARENAKLNNLNNCEFIAGDIAQVIKEVK 374 Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDL 332 + + I +DPPR G+ + V + P I+Y+SCNP +L DL Sbjct: 375 Q---------------KPDVIILDPPRPGVHPKALEYVIKFDSPTIVYVSCNPKTLVEDL 419 Query: 333 SIL-STTHTIERLALFDQFPYTRHMECGVLLVRKPS 367 +L + IE++ D FP T H+E V L RK + Sbjct: 420 KVLVENGYVIEKVKGMDMFPSTPHVETVVGLRRKDT 455 >gi|320527423|ref|ZP_08028604.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Solobacterium moorei F0204] gi|320132136|gb|EFW24685.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Solobacterium moorei F0204] Length = 377 Score = 259 bits (663), Expect = 4e-67, Method: Composition-based stats. Identities = 87/382 (22%), Positives = 151/382 (39%), Gaps = 36/382 (9%) Query: 2 SGTLLID-QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMR--AEFHIWHDGDDL 58 G ID YE+QL K + +R++ + + +P HYR + A F + + Sbjct: 11 GGCAYIDVPYEEQLKMKREEMRKIFRT-KAIEPVLGMKDPYHYRHKIYASFARDKKTNRI 69 Query: 59 YHIMFDQQTKERMRIDYFMPGSLL-------INALMIEMMATIRLEPLLRAKLFQIDYLT 111 Y M+++ + ++ + + L I L M I E R L Sbjct: 70 YAGMYEENSHRKVPSEMCLIQHTLANEILTTICKLAESMRIEIYDEDSGRGTLRHAYIRI 129 Query: 112 SQ-SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD----Y 166 S+ ++ ++ ++ + + L K I RA+ T + L +D Y Sbjct: 130 SKATNDVLLDIVIGSKGLPSSKNFVNALVKKFPQIKTIILNFNRAH-TSMILGKDERVLY 188 Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSL 225 +T L +R SF Q N + L+ K D+ L+ CG G SL Sbjct: 189 GPGYITDRIGGLEFRISSKSFYQVNPEQTEVLYRTALSLVKIKDTDVVLDACCGIGTISL 248 Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285 + A+ V+ VEI ++ A+ N N + N + + EF Q M Sbjct: 249 LAAQSAKHVIGVEINPQAIRDAKNNAKHNKLLNTEFYAADATEFIQRMN----------- 297 Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST-THTIE 342 + + +DPPRSG+ + + + ++YISCNP + D+ L + I+ Sbjct: 298 ----IKTDVVILDPPRSGMTLPFMHKLAQLSPDRVVYISCNPYTQVTDIEPLKKAGYQIK 353 Query: 343 RLALFDQFPYTRHMECGVLLVR 364 ++ D F +T H+E VLL + Sbjct: 354 KIVPVDLFGFTPHVETMVLLSK 375 >gi|146318257|ref|YP_001197969.1| SAM-dependent methyltransferase related to tRNA (uracil-5-)-methyltransferase [Streptococcus suis 05ZYH33] gi|146320451|ref|YP_001200162.1| SAM-dependent methyltransferase related to tRNA (uracil-5-)-methyltransferase [Streptococcus suis 98HAH33] gi|253751426|ref|YP_003024567.1| RNA methyltransferase [Streptococcus suis SC84] gi|253753327|ref|YP_003026468.1| RNA methyltransferase [Streptococcus suis P1/7] gi|253755843|ref|YP_003028983.1| RNA methyltransferase [Streptococcus suis BM407] gi|145689063|gb|ABP89569.1| SAM-dependent methyltransferase related to tRNA (uracil-5-)-methyltransferase [Streptococcus suis 05ZYH33] gi|145691257|gb|ABP91762.1| SAM-dependent methyltransferase related to tRNA (uracil-5-)-methyltransferase [Streptococcus suis 98HAH33] gi|251815715|emb|CAZ51315.1| putative RNA methyltransferase [Streptococcus suis SC84] gi|251818307|emb|CAZ56118.1| putative RNA methyltransferase [Streptococcus suis BM407] gi|251819573|emb|CAR45243.1| putative RNA methyltransferase [Streptococcus suis P1/7] gi|292558055|gb|ADE31056.1| tRNA (uracil-5-)-methyltransferase/TrmA [Streptococcus suis GZ1] Length = 452 Score = 259 bits (663), Expect = 4e-67, Method: Composition-based stats. Identities = 78/381 (20%), Positives = 146/381 (38%), Gaps = 40/381 (10%) Query: 10 YEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 Y QLA K ++ + + P+ YR +A + L F Sbjct: 88 YPAQLAFKKKQVENSLRKIAGISEIAVADTLGMDSPLAYRNKAAVPVRRVNGQLETGFFR 147 Query: 65 QQTKERMRIDYFMPGSLLINALMI---EMMATIRLEP--------LLRAKLFQIDYLTSQ 113 + + + + I+ F I+AL++ +++ + L+P L+R + + + + Q Sbjct: 148 KNSHDLVPIEDFYIQHKEIDALVLATRDLLRKLDLKPYDEKEQTGLVRNIVVRRGHYSGQ 207 Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY----VDE 169 +VT R RL +Q I N T +++ E Sbjct: 208 LMLVLVT---TRPKIFRVETLIERLTSQFPNLVSIVQNINDQN-TNAIFGQEFRLLHGSE 263 Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLA 228 + + SF Q N + + + + + D+ ++ Y G G L A Sbjct: 264 TIADTMLGNEFEISAPSFYQVNTEMAEKLYQTAIDFAELSADDVVIDAYSGIGTIGLSFA 323 Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288 + V VE+ + +V ++ N A N ++NV V S++ Q + Sbjct: 324 KQVKHVYGVEVVEKAVLDSQKNAARNGIDNVTYVCDSAESAMQKWVAD------------ 371 Query: 289 SYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILST-THTIERLA 345 + IFVDPPR GL ++ + + I+YISCN ++ RD+ + + + ++ Sbjct: 372 GVKPTVIFVDPPRKGLTESFIKASTSVKPEKIVYISCNVATMARDIKLYEELGYKLTKVQ 431 Query: 346 LFDQFPYTRHMECGVLLVRKP 366 D FP T H+E LL ++ Sbjct: 432 PADLFPNTHHIEVVGLLEKRN 452 >gi|288905623|ref|YP_003430845.1| RNA methyltransferase [Streptococcus gallolyticus UCN34] gi|288732349|emb|CBI13921.1| putative RNA methyltransferase [Streptococcus gallolyticus UCN34] Length = 456 Score = 259 bits (663), Expect = 4e-67, Method: Composition-based stats. Identities = 77/379 (20%), Positives = 149/379 (39%), Gaps = 40/379 (10%) Query: 10 YEQQLAEKVDRLRQMMLAF-QVPNLQI----FRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 Y +QL K ++ + + ++++ + P YR +A+ + L F Sbjct: 88 YAEQLKFKRKQVMDNLYKTAGISDVEVAETLGMAHPYAYRNKAQVPVRRVNGQLETGFFR 147 Query: 65 QQTKERMRIDYFMPGSLLINAL---MIEMMATIRLEP--------LLRAKLFQIDYLTSQ 113 + + + M I + + I+ L +++ L+P L+R + + + + Sbjct: 148 KHSHDLMPISDYYIQNKEIDRLINFTRDLLRRFDLKPYDEKGQTGLIRNLVVRRGHYSG- 206 Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD----YVDE 169 + ++ + R + ++ K +Q I N T + Y + Sbjct: 207 --EMMLVFVTTRPKIFRIEQIIEKIVVEFPTVKSIVQNINDKN-TNAIFGNEFKTLYGKD 263 Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLA 228 + + Y SF Q N + + + + + D +++ Y G G L A Sbjct: 264 TIVDSMLGNQYEISARSFYQVNTEMAERLYQTAIDFSDLTPEDIVIDAYSGIGTIGLSFA 323 Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288 ++ V VE+ + +VE A+ N A N + N V S++ ++ Sbjct: 324 KNVKAVYGVEVIEEAVEDAKRNAALNGITNAHYVADSAEHAMATWSKD------------ 371 Query: 289 SYRFKTIFVDPPRSGLDDATVGM-VQAYP-HILYISCNPDSLCRDLSILST-THTIERLA 345 + I VDPPR GL + + V P I YISCNP ++ RD+ + + ++++ Sbjct: 372 GIKPSVILVDPPRKGLTENFIKASVAMQPEKITYISCNPATMARDIKLYQELGYKLQKVQ 431 Query: 346 LFDQFPYTRHMECGVLLVR 364 D FP T H+E LLVR Sbjct: 432 PVDLFPNTHHVEAVSLLVR 450 >gi|199597997|ref|ZP_03211421.1| tRNA (uracil-5-)-methyltransferase related enzyme [Lactobacillus rhamnosus HN001] gi|199591087|gb|EDY99169.1| tRNA (uracil-5-)-methyltransferase related enzyme [Lactobacillus rhamnosus HN001] Length = 455 Score = 259 bits (663), Expect = 4e-67, Method: Composition-based stats. Identities = 75/384 (19%), Positives = 140/384 (36%), Gaps = 47/384 (12%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHDGDDLYHIM 62 Y QL K D + Q + F+ Q I + P HYR +A+F + + + Sbjct: 91 YPAQLRFKRDVVAQALAKFKPLGWQHYDLKPTIGMTHPTHYRNKAQFPVREINGHVRAGL 150 Query: 63 FDQQTKERMRIDYFMPG-----------SLLINALMIEMMATIRLEPLLRAKLFQIDYLT 111 + + + + +F+ L+ L I + + +++ + + + Sbjct: 151 YAPGSHRLIPLTHFLTQAPLTMKVVTTLCQLLEDLQIPIYNEKKHAGIVKTLVVRESF-- 208 Query: 112 SQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIG-------RANKTKICLDR 164 + Q VT I + + + L Q I ++++ + Sbjct: 209 -SAGQVQVTFITNSAKLPKQAQLITAIAAQLPMVVSIAQNINLGNTSLIWGKESRLLAGQ 267 Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNF 223 Y+ E L+ ++ +F Q N + A + D L++ YCG G Sbjct: 268 PYIQETLS----GRTFQLSPQAFLQLNPKQTEQLYAIAKDALQLAPDDTLIDAYCGIGTV 323 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 + LA + ++ ++ A+ N N NN + ++ +E Sbjct: 324 GMSLANRHQSIYGMDTIPEAIADAKANAKNNGFNNTRYFVGKAETLFPKWLKE------- 376 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCRDLSILSTTHTI 341 + VDPPRSGL+ + ++Q P YISCNP +L RDL L+ + + Sbjct: 377 -----GIHPNAVIVDPPRSGLERPFIDALLQLSPQKFAYISCNPSTLARDLVPLAKHYQV 431 Query: 342 ERLALFDQFPYTRHMECGVLLVRK 365 + + D FP T E V R+ Sbjct: 432 DWIQSIDMFPQTARCEAVVKFTRR 455 >gi|310779073|ref|YP_003967406.1| 23S rRNA m(5)U-1939 methyltransferase [Ilyobacter polytropus DSM 2926] gi|309748396|gb|ADO83058.1| 23S rRNA m(5)U-1939 methyltransferase [Ilyobacter polytropus DSM 2926] Length = 453 Score = 259 bits (663), Expect = 4e-67, Method: Composition-based stats. Identities = 76/383 (19%), Positives = 148/383 (38%), Gaps = 31/383 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFHIWHDGD 56 + +YE QL K + + ++ I + P +YR + + Sbjct: 82 GCDFGMLKYESQLKYKKEMVEDVLKKIGKLENFEIYDTIGSTSPKYYRNKVIEPFAYKDG 141 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMA-------TIRLEPLLRAKLFQIDY 109 + F +++ E + M S L N + E+ + E R L + Sbjct: 142 KIISGFFKKKSHEVFEVSENMLQSKLANRITKELKEILNKKRIPVYDEKKHRGILRHVMV 201 Query: 110 LTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD---Y 166 T+ D+A+V L+ ++ LRD K + D D Y Sbjct: 202 RTNSFDEAMVVLVVKGEPAKNLKKILYDLRDRCPEVKAAYISVNNKRTNVALGDEDIYVY 261 Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNFSL 225 DE L + + SF Q N + E ++ ++ ++++ Y G G ++ Sbjct: 262 GDEVLKEELFDIKFNISPKSFFQINLEQTKKLYETAISYFDDVKNKNIVDAYSGTGTIAM 321 Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285 +L+R +V A+E+ K + A+ N + N+ + + +L+++ Sbjct: 322 ILSRWAKKVFAIEMVKSATLDAKKTSMENKIKNIDFINGKVE------------GKLEEL 369 Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILST-THTIE 342 + I DPPR G++++ + V I+YISCNP + RD ++L+ + + Sbjct: 370 LKKREKIDAIIFDPPRKGIEESVLHSVAKTGINEIVYISCNPSTFARDANVLNEIGYDLL 429 Query: 343 RLALFDQFPYTRHMECGVLLVRK 365 ++ D FP T H+E V++ Sbjct: 430 KVQPVDMFPQTSHIEVVGKFVKR 452 >gi|194467488|ref|ZP_03073475.1| RNA methyltransferase, TrmA family [Lactobacillus reuteri 100-23] gi|194454524|gb|EDX43421.1| RNA methyltransferase, TrmA family [Lactobacillus reuteri 100-23] Length = 467 Score = 259 bits (662), Expect = 4e-67, Method: Composition-based stats. Identities = 79/388 (20%), Positives = 133/388 (34%), Gaps = 47/388 (12%) Query: 10 YEQQLAEKVDRLRQMMLAFQV-------PNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIM 62 Y+QQL K + + FQ I E YR +A+F + + + Sbjct: 99 YQQQLKFKRQVIIDSLEKFQPYGYRNYNVRPTIAAPEEYGYRNKAQFQVRMVNGKVAAGL 158 Query: 63 FDQQTKERMRIDYFMPG-----------SLLINALMIEMMATIRLEPLLRAKLFQIDYLT 111 + + + ++ + +I L I + +++ Q + T Sbjct: 159 YQPNSHTLVDMETCAVQMPRTMETVRAVTKMIEDLQIPVYDEKHNSGIIKTLAVQESWST 218 Query: 112 SQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIG-------RANKTKICLDR 164 + +T I + RE R+ L A +Q + K + Sbjct: 219 G---EVQLTFITNSAKLPHKRELLERIEKELPAVVSVMQNVNPGDTPLVWGEKMIHLAGK 275 Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWV-LAATKGIQGDLLELYCGNGNF 223 D + E L L ++ SF Q N + E A L++ Y G G Sbjct: 276 DSILESLM----GLDFKLSARSFLQLNPEQTEVLYEEASKALELDKDDTLIDAYAGIGTI 331 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 L LA V +EI +V A N N++ N K ++E ++E Sbjct: 332 GLSLASRVKAVRGMEIIPEAVADANENAKLNNIANAKYEVGKAEEVLPRWQKE------- 384 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILSTTHTI 341 F + VDPPR+GLDD + + Y+SC SL R+L L++ + + Sbjct: 385 -----GLNFDALVVDPPRTGLDDQLIKQILKVKPRKFAYVSCGMASLARNLRRLTSVYHV 439 Query: 342 ERLALFDQFPYTRHMECGVLLVRKPSGW 369 + + D P T E V L + Sbjct: 440 DYIQPIDMMPQTARCEAVVKLSLRNGNK 467 >gi|148543331|ref|YP_001270701.1| RNA methyltransferase [Lactobacillus reuteri DSM 20016] gi|184152739|ref|YP_001841080.1| RNA methyltransferase [Lactobacillus reuteri JCM 1112] gi|227364399|ref|ZP_03848491.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus reuteri MM2-3] gi|325683598|ref|ZP_08163114.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus reuteri MM4-1A] gi|148530365|gb|ABQ82364.1| 23S rRNA m(5)U-1939 methyltransferase [Lactobacillus reuteri DSM 20016] gi|183224083|dbj|BAG24600.1| RNA methyltransferase [Lactobacillus reuteri JCM 1112] gi|227070585|gb|EEI08916.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus reuteri MM2-3] gi|324977948|gb|EGC14899.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus reuteri MM4-1A] Length = 468 Score = 259 bits (662), Expect = 4e-67, Method: Composition-based stats. Identities = 80/388 (20%), Positives = 137/388 (35%), Gaps = 47/388 (12%) Query: 10 YEQQLAEKVDRLRQMMLAFQV-------PNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIM 62 Y+QQL K + + FQ I E YR +A+F + + + Sbjct: 99 YQQQLKFKRQVIIDSLEKFQPYGYRNYDVRPTIAAPEEYGYRNKAQFQVRMVNGKVAAGL 158 Query: 63 FDQQTKERMRIDYFMPG-----------SLLINALMIEMMATIRLEPLLRAKLFQIDYLT 111 + + + ++ + +I L I + +++ + + T Sbjct: 159 YQPNSHTLVDMETCAVQMPRTMETVRAVTKMIEDLQIPVYDEKHNSGIVKTLAVRESWST 218 Query: 112 SQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIG-------RANKTKICLDR 164 + +T I + RE R+ L A +Q + +K + Sbjct: 219 G---EVQLTFITNSAKLPHKRELLERIEKELPAVVSVMQNVNPGDTPLVWGDKMIHLAGK 275 Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNF 223 D + E L L ++ SF Q N + E A + Q D L++ Y G G Sbjct: 276 DSILESLM----GLDFKLSARSFLQLNPEQTEVLYEEASKALELDQDDTLIDAYAGIGTI 331 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 L LA V +EI +V A N N++ N K ++E ++E Sbjct: 332 GLSLASRVKAVRGMEIIPEAVADANENAKLNNITNAKYEVGKAEEVLPRWQKE------- 384 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILSTTHTI 341 F + VDPPR+GLDD + + Y+SC SL R+L L++ + + Sbjct: 385 -----GLNFDALVVDPPRTGLDDQLIKQILKVKPRKFAYVSCGMASLARNLRRLTSVYHV 439 Query: 342 ERLALFDQFPYTRHMECGVLLVRKPSGW 369 + + D P T E V L + Sbjct: 440 DYIQPIDMMPQTARCEAVVKLSLRNGNK 467 >gi|148264841|ref|YP_001231547.1| RNA methyltransferase [Geobacter uraniireducens Rf4] gi|146398341|gb|ABQ26974.1| 23S rRNA m(5)U-1939 methyltransferase [Geobacter uraniireducens Rf4] Length = 470 Score = 259 bits (662), Expect = 4e-67, Method: Composition-based stats. Identities = 82/389 (21%), Positives = 150/389 (38%), Gaps = 38/389 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIF-----RSEPIHYRMRAEFHIWHDGD 56 L+ Y QL K + + + ++ + + ++YR A+ I Sbjct: 97 GCPLIQMNYPAQLTWKKQLVGKFVRRYKTLEKAVLHDVIESPQQLNYRNSAKLVITGKFA 156 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKLF 105 + ++ + + + + I LIN ++ + A I+ LLR + Sbjct: 157 EPIIGIYRRNSHDVLDIGDCPLHHPLINKIITAVKAGIKKGKVPIYNPKSEMGLLRYLVI 216 Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD 165 ++ + +++A+V + + A L+ A+ Q I ++ I +D Sbjct: 217 RV---SETANRAMVVFVTSERSYNEIHHLAKHLQAAVPEVTVIDQNINGSSGNVIFGQKD 273 Query: 166 YV---DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNG 221 + + L A + SF Q N+G + E V + +L+LYCG G Sbjct: 274 HFVTKEHVLPAAIGGTRFHISPRSFFQVNSGAARIIYEKVREWGALTGKERVLDLYCGIG 333 Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281 SL LA VL +E+ + +V A N N++ N + +R E E Sbjct: 334 GISLFLAGKAREVLGIEVVEAAVADAEMNAQLNNIRNCRFKAGDVARLLGELREEGE--- 390 Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVG--MVQAYPHILYISCNPDSLCRDLSILST-T 338 + + ++PPR G D+ + I+Y+SC+P +L DL IL+ Sbjct: 391 ---------KVDLVILNPPRKGCDEQVLRETAAIGPQKIIYVSCSPQTLSHDLDILAALG 441 Query: 339 HTIERLALFDQFPYTRHMECGVLLVRKPS 367 + + D FP T H+E LLV+ S Sbjct: 442 YRTTEIQPVDMFPQTPHVEDVALLVKMKS 470 >gi|168179294|ref|ZP_02613958.1| 23S rRNA -methyltransferase RumA [Clostridium botulinum NCTC 2916] gi|182669610|gb|EDT81586.1| 23S rRNA -methyltransferase RumA [Clostridium botulinum NCTC 2916] Length = 450 Score = 259 bits (662), Expect = 4e-67, Method: Composition-based stats. Identities = 82/391 (20%), Positives = 147/391 (37%), Gaps = 47/391 (12%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIF----RSEPIHYRMRAEFHIW--HDG 55 + YE+QL K ++L ++ + ++ E YR + EF G Sbjct: 79 GCSTQYIPYEKQLQIKEEQLLKLFKSKEIKGFDFLGVEKSPEEYEYRNKMEFTFGDMEKG 138 Query: 56 DDLYHIMFDQQTK-ERMRIDYFMPGSLLI-----------NALMIEMMATIRLEPLLRAK 103 DL M + + +D N + + E LR Sbjct: 139 GDLTLGMHVKNRNFSIVTVDNCEIVDRDFRNILTTVVNYFNEKRLPKYRVMSHEGFLRNL 198 Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDA------WRECAIRLRDALHARKYQIQLIGRANK 157 + + T + IVT EC ++ LH + + + +K Sbjct: 199 VIRKAKNTGEILINIVTTSQMEFDFKEIVDMLLKGECKGEIKGILHTINDTLSDVVQVDK 258 Query: 158 TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-EL 216 +I RDY+ E L L ++ +F Q N+ + V ++ +L Sbjct: 259 LEILYGRDYIIEELL----GLKFKIAPEAFFQTNSKGAEKLYSIVKDFLGDASSKVVFDL 314 Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276 YCG G ++A +V+ VE+ + +V+AA N N +NN + + + + +++ Sbjct: 315 YCGTGTIGQIVAPRAKKVIGVELIEEAVKAANENAKLNGLNNCEFIAGDVAKVIKDVKQ- 373 Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSI 334 + I +DPPR G+ + V + I+Y+SCNP +L DL Sbjct: 374 --------------KPDIIILDPPRPGVHPVALEYVVKFEPKEIIYVSCNPKTLVDDLKY 419 Query: 335 L-STTHTIERLALFDQFPYTRHMECGVLLVR 364 L + +E++ D FP+T H+E V L + Sbjct: 420 LIDNGYKLEKVKGMDMFPHTPHVETVVKLSK 450 >gi|304385720|ref|ZP_07368064.1| 23S rRNA (uracil-5-)-methyltransferase [Pediococcus acidilactici DSM 20284] gi|304328224|gb|EFL95446.1| 23S rRNA (uracil-5-)-methyltransferase [Pediococcus acidilactici DSM 20284] Length = 490 Score = 259 bits (662), Expect = 5e-67, Method: Composition-based stats. Identities = 78/384 (20%), Positives = 141/384 (36%), Gaps = 42/384 (10%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHDGDDLY-HI 61 Y QL K D +RQ + F+ Q I +P+ YR +A+F I D Sbjct: 123 YPAQLEFKRDVIRQALTKFRPAGYQDYELRPTIGMDDPVAYRNKAQFQIRRLADGRIGAG 182 Query: 62 MFDQQTKERMRIDYFMPGSLLINAL-----------MIEMMATIRLEPLLRAKLFQIDYL 110 ++ + T E + + L + +++ E L+ + ++ Sbjct: 183 LYKEGTHELVDLATCSVQHPLTMKIIRAAVALFTKYDVDIYDEHHNEGELKTLVVRVAQA 242 Query: 111 TSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY 166 T ++ +T L + + D + + Q + ++T +D Sbjct: 243 TQETQVVFITNTTQLSHATEIIDELSTQFPEIVSFMQNINPGRQSLIWGDQTVKLRGQDT 302 Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELYCGNGNFSL 225 + E L L + +F Q N V + + A + +++ Y G G L Sbjct: 303 IREEL----DGLSFNLSARAFFQLNPQQTVTLYDEARKALSITPNSRIVDAYSGVGTIGL 358 Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285 LA + ++ ++ A N N + N + S+++ +E Sbjct: 359 SLASEAKEIRGMDTIADAITDANENARLNSITNTRYEVGSAEKLLPKWLKE--------- 409 Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILSTTHTIER 343 ++ I VDPPR GLD + + A H Y+SCNP +L RDL L + +E Sbjct: 410 ---GFQPDGIVVDPPRVGLDRRLIDAILKSAPKHFAYVSCNPSTLARDLVPLVKKYRVEY 466 Query: 344 LALFDQFPYTRHMECGVLLVRKPS 367 + D FP T +E V L + + Sbjct: 467 IQSIDMFPQTARVEAVVKLTLRNA 490 >gi|227543796|ref|ZP_03973845.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus reuteri CF48-3A] gi|300908864|ref|ZP_07126327.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus reuteri SD2112] gi|227186223|gb|EEI66294.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus reuteri CF48-3A] gi|300894271|gb|EFK87629.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus reuteri SD2112] Length = 468 Score = 259 bits (662), Expect = 5e-67, Method: Composition-based stats. Identities = 79/388 (20%), Positives = 133/388 (34%), Gaps = 47/388 (12%) Query: 10 YEQQLAEKVDRLRQMMLAFQV-------PNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIM 62 Y+QQL K + + FQ I E YR +A+F I + + Sbjct: 99 YQQQLKFKRQVIIDSLEKFQPYGYRNYDVRPTIAAPEEYGYRNKAQFQIRMVNGKVAAGL 158 Query: 63 FDQQTKERMRIDYFMPG-----------SLLINALMIEMMATIRLEPLLRAKLFQIDYLT 111 + + + ++ + +I L I + +++ + + T Sbjct: 159 YQPNSHTLVDMETCAVQMPRTMETVRAVTKMIEDLQIPVYDEKNNSGIIKTLAVRESWST 218 Query: 112 SQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIG-------RANKTKICLDR 164 + +T I + RE R+ L A +Q + +K + Sbjct: 219 G---EVQLTFITNSAKLPHKRELLERIEKELPAVVSVMQNVNPGDTPLIWGDKMIHLAGK 275 Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWV-LAATKGIQGDLLELYCGNGNF 223 D + E L L ++ SF Q N + E A L++ Y G G Sbjct: 276 DSILESLM----GLDFKLSARSFLQLNPEQTEVLYEEASKALELDKDDTLIDAYAGIGTI 331 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 L LA V +EI +V A N N++ N K ++E + E Sbjct: 332 GLSLASRVKSVCGMEIIPEAVADANENAKLNNITNAKYEVGKAEEVLPRWQEE------- 384 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILSTTHTI 341 F + VDPPR+GLDD + + Y+SC SL R+L L++ + + Sbjct: 385 -----GLNFDALVVDPPRTGLDDQLIKQILKVKPRKFAYVSCGMASLARNLRRLTSVYHV 439 Query: 342 ERLALFDQFPYTRHMECGVLLVRKPSGW 369 + + D P T E V L + Sbjct: 440 DYIQPIDMMPQTARCEAVVKLSLRNGNK 467 >gi|170017687|ref|YP_001728606.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Leuconostoc citreum KM20] gi|169804544|gb|ACA83162.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Leuconostoc citreum KM20] Length = 473 Score = 259 bits (662), Expect = 5e-67, Method: Composition-based stats. Identities = 81/379 (21%), Positives = 143/379 (37%), Gaps = 39/379 (10%) Query: 9 QYEQQLAEKVDRLRQMMLAFQV---PNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ 65 +YE QL K ++ Q+ V N I ++P YR +A+ + L + + Sbjct: 111 KYEAQLTFKQRQVEQLFKKVNVSVEVNPTIGMTDPTKYRNKAQVPVQMVNGQLETGFYRR 170 Query: 66 QTKERMRIDYFMPGSLLINA-----------LMIEMMATIRLEPLLRAKLFQIDYLTSQS 114 + + M ++ F ++ L I + ++R + + + + + Sbjct: 171 GSHKLMPVEDFYIQDPKVDEAVSVTRDVLRDLGISAYDEETHKGVVRHIMARRGFYSHEL 230 Query: 115 DQAIVTLIYHRLLDD----AWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDER 170 I+T D A R L+ +H + + D + ++ Sbjct: 231 MVVIITNTKKLPEADNIAAALRAKLPELKSFIHNINNHDTNVIMGQWNETVWGADEIHDQ 290 Query: 171 LTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFSLVLAR 229 L + NSF Q N + D++ + Y G G +L +A Sbjct: 291 LMGKD----FIIGPNSFYQINPQTTAVLYTLAAEKAGLKPTDVVVDAYSGIGTITLSIAD 346 Query: 230 HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHS 289 +V VE+ + +V A N NH++NV+ V + E + Sbjct: 347 QVAKVYGVEVVEDAVLDAEKNAQNNHIDNVEFVTADAPEQMTQWAAD------------G 394 Query: 290 YRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRD-LSILSTTHTIER-LA 345 + +FVDPPR GL + + V A +YISCNP +L RD + IL+ I+ + Sbjct: 395 LKPDVVFVDPPRKGLTNELISAVSAMQPKTFVYISCNPATLARDTVQILAEGFHIDGPIQ 454 Query: 346 LFDQFPYTRHMECGVLLVR 364 DQFP T H+E ++ R Sbjct: 455 PIDQFPQTTHVESVLIFKR 473 >gi|78223178|ref|YP_384925.1| 23S rRNA methyltransferase/RumA [Geobacter metallireducens GS-15] gi|78194433|gb|ABB32200.1| 23S rRNA m(5)U-1939 methyltransferase [Geobacter metallireducens GS-15] Length = 493 Score = 259 bits (662), Expect = 5e-67, Method: Composition-based stats. Identities = 77/384 (20%), Positives = 138/384 (35%), Gaps = 38/384 (9%) Query: 3 GTLLIDQYEQQLAEKVDRLRQMMLAFQ----VPNLQIFRSE-PIHYRMRAEFHIWHDGDD 57 L+ Y QL K + + + +F VP + S P+ YR A+ + Sbjct: 95 CPLISMNYGAQLTLKRSLVEKEIRSFASLRAVPIDDVISSPRPLQYRNSAKLVVAGTFKS 154 Query: 58 LYHIMFDQQTKERMRIDYFMPGSLLINAL-----------MIEMMATIRLEPLLRAKLFQ 106 ++ + + + I + LIN + + + +LR + + Sbjct: 155 PIIGIYRRNSHNVVDISACPLHNPLINRVVAAAKEGIRKGKVPVYNPRTDTGILRYLVVR 214 Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY 166 + T ++ VT + + A +R A+ +Q + + I D+ Sbjct: 215 VSEHTGRAMAVFVTA---QRSYNEIHHLAKFVRQAVPELDVAVQNVNTSEGNVILAPHDH 271 Query: 167 V---DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGN 222 D + + + SF Q N+G + E V + + +++LYCG G Sbjct: 272 FLTKDHAIIEELAGIRFSISPRSFFQVNSGSARIIYEKVREWSALTGNEKVVDLYCGIGG 331 Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282 SL LA V +E +V A N N + N + L Sbjct: 332 ISLFLAPGAQEVHGIEYVDAAVADAERNARLNGIRNCSFEAGDAA------------ELL 379 Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST-TH 339 +++ + +PPR G D + ++Y+SC+P +L RDL IL+ + Sbjct: 380 EELVEEGTEPDVVIFNPPRKGCDRRVLEAAVNSGPGRMIYVSCSPATLARDLDILAGLGY 439 Query: 340 TIERLALFDQFPYTRHMECGVLLV 363 + D FP T H+E LLV Sbjct: 440 QTREIQPVDMFPQTPHIENVALLV 463 >gi|167756546|ref|ZP_02428673.1| hypothetical protein CLORAM_02083 [Clostridium ramosum DSM 1402] gi|167702721|gb|EDS17300.1| hypothetical protein CLORAM_02083 [Clostridium ramosum DSM 1402] Length = 448 Score = 259 bits (662), Expect = 5e-67, Method: Composition-based stats. Identities = 79/386 (20%), Positives = 153/386 (39%), Gaps = 39/386 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ----VPNLQIFRSEPIHYRMRAEFHIWHDGDD 57 L + Q+ K R++ + N I +P HYR + + + G+ Sbjct: 79 GCQLQHLNPQGQMIYKTKRVKDCLERIGNCKVAVNDCIMMEKPWHYRNKVQMPVGVKGNH 138 Query: 58 LYHIMFDQQTKERMRIDYFMPGSLLINALM---IEMMATIRLEPLLR-AKLFQIDYLTSQ 113 L + Q++ E + + + L N + E+M ++ P + A I ++ ++ Sbjct: 139 LVTGFYKQKSNEIIPCENCYIQNELSNQITNRVKELMEEFKIYPYDKLAHQGNIKHILTK 198 Query: 114 ----SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGR-------ANKTKICL 162 +D+ ++ LI +R + + K IQ I + I Sbjct: 199 HGYHTDEVMLVLISYRNKIKDIDKLVEIITKEFPMIKTVIQNINHRTDNVILGEQEVILF 258 Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNG 221 Y+ + L Y+ SF Q N + + + D +L+ YCG G Sbjct: 259 GNGYIYDTLLGN----KYKISLKSFYQVNPIQVEKLYSKAIEFAGLSKEDIVLDAYCGIG 314 Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281 +L +A++ +V VEI + +++ A+ N N+++N + + ++ + + + Sbjct: 315 TITLSVAKYVKKVYGVEIVETAIDDAKNNAVLNNISNAEFKCSDAGKYMLELVNQDQ--- 371 Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCRDLSILST-T 338 +FVDPPR G + ++QA P I+YISC+ + RD+ L Sbjct: 372 ---------HLDVVFVDPPRKGCSTEFLDNLIQAEPKKIIYISCDVATQARDIKYLQEFG 422 Query: 339 HTIERLALFDQFPYTRHMECGVLLVR 364 + + D FP+T H+E V L + Sbjct: 423 YHADVCQPVDMFPHTTHIENIVRLSK 448 >gi|19705034|ref|NP_602529.1| tRNA (Uracil-5-) -methyltransferase [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|50401614|sp|Q8R5Z8|Y1713_FUSNN RecName: Full=Uncharacterized RNA methyltransferase FN1713 gi|19712946|gb|AAL93828.1| tRNA (Uracil-5-) -methyltransferase [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 464 Score = 259 bits (662), Expect = 5e-67, Method: Composition-based stats. Identities = 76/385 (19%), Positives = 162/385 (42%), Gaps = 34/385 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAF-QVPNLQI----FRSEPIHYRMRAEFHIWHDGD 56 + +YE QL K + +++ + +++I + +YR + + Sbjct: 92 GCDFAMLKYESQLKYKRFMVEEVIRKIAGLSDIEISDVLASEDIYNYRNKIIEPFSVYAN 151 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-------LRAKLFQIDY 109 + F +++ E +D + S L N ++ E+ + + + L I Sbjct: 152 KIITGFFKRKSHEVFEVDENILNSKLGNKIIKELKEILNKNKISVYDENTHKGILRNIMI 211 Query: 110 LTSQSDQAIVTLIYHR-LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR---- 164 T+ +++A+V LI + + + ++ +LR+ + K I + + KT + Sbjct: 212 RTNSNNEAMVVLIINSNKITENIKKLLFKLRENIEEIK-SIYISLNSKKTNTVIGEKNIL 270 Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNF 223 Y ++ + + + SF Q N + + ++ I +++ Y G G Sbjct: 271 IYGEKSIKENINRIEFHISPTSFFQINVKQAKRLYDIAISFFDNIDNKYIVDAYSGTGTI 330 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 +++A+ +V A+EI K + E N + N++ + + ++ L Sbjct: 331 GMIIAKKAKKVYAIEIVKSASEDGEKTAKENGIENIEFINGAVEK------------ELV 378 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST-THT 340 + ++ + TI DPPR GL+ + + V ++YISCNP + RD+ + S + Sbjct: 379 KLVNNNQKIDTIIFDPPRKGLETSIIDKVAELNLKEVVYISCNPSTFARDVKLFSEKGYV 438 Query: 341 IERLALFDQFPYTRHMECGVLLVRK 365 +++L D FP T H+EC L+ RK Sbjct: 439 LKKLQAVDMFPQTSHIECVGLIERK 463 >gi|330832578|ref|YP_004401403.1| RNA methyltransferase, TrmA family [Streptococcus suis ST3] gi|329306801|gb|AEB81217.1| RNA methyltransferase, TrmA family [Streptococcus suis ST3] Length = 452 Score = 259 bits (662), Expect = 5e-67, Method: Composition-based stats. Identities = 78/381 (20%), Positives = 145/381 (38%), Gaps = 40/381 (10%) Query: 10 YEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 Y QLA K ++ + + P+ YR +A + L F Sbjct: 88 YPAQLAFKKKQVENSLRKIAGISEIAVADTLGMDNPLAYRNKAAVPVRRVNGQLETGFFR 147 Query: 65 QQTKERMRIDYFMPGSLLINALMI---EMMATIRLEP--------LLRAKLFQIDYLTSQ 113 + + + I+ F I+AL++ +++ + L+P L+R + + + + Q Sbjct: 148 KNSHDLFPIEDFYIQHKEIDALVLATRDLLRKLDLKPYDEKEQTGLVRNIVVRRGHYSGQ 207 Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY----VDE 169 +VT R RL +Q I N T +++ E Sbjct: 208 LMLVLVT---TRPKIFRVETLIERLTSQFPNLVSIVQNINDQN-TNAIFGQEFHLLHGSE 263 Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLA 228 + + SF Q N + + + + + D+ ++ Y G G L A Sbjct: 264 TIADTMLGNEFEISAPSFYQVNTEMAEKLYQTAIDFAELSADDVVIDAYSGIGTIGLSFA 323 Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288 + V VE+ + +V ++ N A N ++NV V S++ Q + Sbjct: 324 KQVKHVYGVEVVEKAVLDSQKNAARNGIDNVTYVCDSAESAMQKWVAD------------ 371 Query: 289 SYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILST-THTIERLA 345 + IFVDPPR GL ++ + + I+YISCN ++ RD+ + + + ++ Sbjct: 372 GVKPTVIFVDPPRKGLTESFIKASTSVKPEKIVYISCNVATMARDIKLYEELGYKLTKVQ 431 Query: 346 LFDQFPYTRHMECGVLLVRKP 366 D FP T H+E LL ++ Sbjct: 432 PTDLFPNTHHVEVVSLLEKRN 452 >gi|294784751|ref|ZP_06750039.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Fusobacterium sp. 3_1_27] gi|294486465|gb|EFG33827.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Fusobacterium sp. 3_1_27] Length = 463 Score = 259 bits (662), Expect = 5e-67, Method: Composition-based stats. Identities = 76/385 (19%), Positives = 163/385 (42%), Gaps = 34/385 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAF-QVPNLQIF----RSEPIHYRMRAEFHIWHDGD 56 + +YE QL K + ++M + ++Q+ + +YR + + Sbjct: 92 GCDFAMLKYESQLKYKRLMVEEVMKKIAGLSDIQVNDVLASEDIYNYRNKIIEPFSVYAN 151 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-------LRAKLFQIDY 109 + F +++ E +D + S L N ++ E+ + + + L I Sbjct: 152 KIITGFFKRKSHEVFEVDENILNSKLGNRIIKELKEILNKNKISVYDENAHKGILRNIMI 211 Query: 110 LTSQSDQAIVTLIYHR-LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR---- 164 T+ +++A+V LI + + + ++ +LR+ + K + + KT + Sbjct: 212 RTNSNNEAMVVLIINSNKITENIKKILFKLRENIKEIKST-YISLNSKKTNTVIGEKNIL 270 Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNF 223 Y ++ + + + SF Q NA + + ++ I +++ Y G G Sbjct: 271 IYGEKSIKENINGIEFHISPTSFFQINAKQAKRLYDIAISFFDDIDDKYIVDAYSGTGTI 330 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 +++A+ +V A+EI K + E N + N++ + + ++ L Sbjct: 331 GMIMAKKAKKVYAIEIVKSASEDGEKTAKENGIKNIEFINGAVEK------------ELV 378 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILST-THT 340 + ++ + TI DPPR GL+ + + V ++YISCNP + RD+ + S + Sbjct: 379 KLINNNQKIDTIIFDPPRKGLEASIIDTVAKLNLKEVVYISCNPSTFARDVKLFSEKGYV 438 Query: 341 IERLALFDQFPYTRHMECGVLLVRK 365 +++L D FP T H+EC L+V++ Sbjct: 439 LKKLQAVDMFPQTSHIECVGLIVKE 463 >gi|302023576|ref|ZP_07248787.1| RNA methyltransferase [Streptococcus suis 05HAS68] Length = 452 Score = 259 bits (662), Expect = 5e-67, Method: Composition-based stats. Identities = 78/381 (20%), Positives = 146/381 (38%), Gaps = 40/381 (10%) Query: 10 YEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 Y QLA K ++ + + P+ YR +A + L F Sbjct: 88 YPAQLAFKKKQVENSLRKIAGISEIAVADTLGMDNPLAYRNKAAVPVRRVNGQLETGFFR 147 Query: 65 QQTKERMRIDYFMPGSLLINALMI---EMMATIRLEP--------LLRAKLFQIDYLTSQ 113 + + + + I+ F I+AL++ +++ + L+P L+R + + + + Q Sbjct: 148 KNSHDLVPIEDFYIQHKEIDALVLATRDLLRKLDLKPYDEKEQTGLVRNIVVRRGHYSGQ 207 Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY----VDE 169 +VT R RL +Q I N T +++ E Sbjct: 208 LMLVLVT---TRPKIFRVETLIERLTSQFPNLVSIVQNINDQN-TNAIFGQEFRLLHGSE 263 Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLA 228 + + SF Q N + + + + + D+ ++ Y G G L A Sbjct: 264 TIADTMLGNEFEISAPSFYQVNTEMAEKLYQTAIDFAELSADDVVIDAYSGIGTIGLSFA 323 Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288 + V VE+ + +V ++ N A N ++NV V S++ Q + Sbjct: 324 KQVKHVYGVEVVERAVLDSQKNAARNGIDNVTYVCDSAESAMQKWVAD------------ 371 Query: 289 SYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILST-THTIERLA 345 + IFVDPPR GL ++ + + I+YISCN ++ RD+ + + + ++ Sbjct: 372 GVKPTVIFVDPPRKGLTESFIKASTSVKPEKIVYISCNVATMARDIKLYEELGYKLTKVQ 431 Query: 346 LFDQFPYTRHMECGVLLVRKP 366 D FP T H+E LL ++ Sbjct: 432 PADLFPNTHHIEVVGLLEKRN 452 >gi|289578782|ref|YP_003477409.1| RNA methyltransferase, TrmA family [Thermoanaerobacter italicus Ab9] gi|289528495|gb|ADD02847.1| RNA methyltransferase, TrmA family [Thermoanaerobacter italicus Ab9] Length = 450 Score = 259 bits (661), Expect = 6e-67, Method: Composition-based stats. Identities = 82/392 (20%), Positives = 156/392 (39%), Gaps = 48/392 (12%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ---IFRSEPIH-YRMRAEFHIWHDGDD 57 T Y +QL K + +++++ + + + I +S H YR + E+ D + Sbjct: 79 GCTYQNVDYLEQLKIKENIVKKLLEKEGIKDYKFLGIVKSPKEHGYRNKMEYTFGKDKEG 138 Query: 58 LYHIMFDQQTK--ERMRIDYFMPGSL------------LINALMIEMMATIRLEPLLRAK 103 + ++ + E + D IN + E LR Sbjct: 139 NAALGLHRKGRFYEVIMTDKCNIVDGDFIKALTLTFDYAINKRLP-FYDKKTHEGFLRHL 197 Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIR------LRDALHARKYQIQLIGRANK 157 + + + + IVT + E L LH + + Sbjct: 198 VVRKASKSREILLNIVTTTQLKHDFTELIEIYKNANFGSHLVGVLHTQNDSWSDAVVCER 257 Query: 158 TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLEL 216 ++ RDY+ E + L ++ SF Q N+ + E V + + +L Sbjct: 258 LEVLYGRDYLIEEIL----DLKFKISAFSFFQTNSYGAEKLYETVREFAGDVSDKIVFDL 313 Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276 Y G G +++A +V+ +E+ + +V +AR N N + N + +Q ++ Sbjct: 314 YSGTGTIGIIMAPMAKKVIGIELVEEAVMSARENAKLNGLKNCTFIAGD---VSQKLKEI 370 Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCRDLSI 334 +E + + VDPPRSG++ + +V+ P ++Y+SCNP+SL RDL + Sbjct: 371 KE------------QPDVVIVDPPRSGINPKALKDIVKFNPQKVVYVSCNPESLARDLKV 418 Query: 335 LST-THTIERLALFDQFPYTRHMECGVLLVRK 365 S + ++++ D FPYT H+E VL+ +K Sbjct: 419 FSEGGYKVDKVKCVDMFPYTYHVETVVLMEKK 450 >gi|168181545|ref|ZP_02616209.1| 23S rRNA -methyltransferase RumA [Clostridium botulinum Bf] gi|237796317|ref|YP_002863869.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum Ba4 str. 657] gi|182674982|gb|EDT86943.1| 23S rRNA -methyltransferase RumA [Clostridium botulinum Bf] gi|229260413|gb|ACQ51446.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum Ba4 str. 657] Length = 453 Score = 259 bits (661), Expect = 6e-67, Method: Composition-based stats. Identities = 86/393 (21%), Positives = 149/393 (37%), Gaps = 49/393 (12%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMML-----AFQVPNLQIFRSEPIHYRMRAEFHIW--HD 54 + YE+QL K ++L ++ F ++ E YR + EF Sbjct: 79 GCSTQYIPYEKQLELKEEQLLKLFKSKEIRGFDFLGVEK-SPEEYEYRNKMEFTFGDMEK 137 Query: 55 GDDLYHIMFDQQTK-ERMRIDYFMPGSLLI-----------NALMIEMMATIRLEPLLRA 102 G DL M + + +D N + + E LR Sbjct: 138 GGDLTLGMHVKNRNFSIVTVDKCEIVDRDFRNILTTVVNYFNEKRLPKYRVMSHEGFLRN 197 Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDA------WRECAIRLRDALHARKYQIQLIGRAN 156 + + T + IVT EC ++ LH + + + + Sbjct: 198 LVIRKAKNTGEILINIVTTSQMEFDFKEIVDMLLKGECKGEIKGILHTINDTLSDVVQVD 257 Query: 157 KTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-E 215 K +I RDY+ E L L ++ +F Q N+ + V ++ + Sbjct: 258 KLEILYGRDYIIEELL----GLKFKIAPEAFFQTNSKGAEKLYSIVKDFLGDASSKVVFD 313 Query: 216 LYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275 LYCG G ++A +V+ VE+ + +V+AA N N +NN + + + + +++ Sbjct: 314 LYCGTGTIGQIVASKAKKVIGVELIEEAVKAANENAKLNGLNNCEFIAGDVAKVIKDVKQ 373 Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLS 333 + I +DPPR G+ + V + I+Y+SCNP +L DL Sbjct: 374 ---------------KPDIIILDPPRPGVHPVALEYVVKFEPKEIIYVSCNPKTLVDDLK 418 Query: 334 IL-STTHTIERLALFDQFPYTRHMECGVLLVRK 365 L + +E++ D FP+T H+E VLL RK Sbjct: 419 YLIDNGYKLEKVKGMDMFPHTPHLETCVLLQRK 451 >gi|300172822|ref|YP_003771987.1| RNA m5u methyltransferase family [Leuconostoc gasicomitatum LMG 18811] gi|299887200|emb|CBL91168.1| RNA m5u methyltransferase family [Leuconostoc gasicomitatum LMG 18811] Length = 464 Score = 259 bits (661), Expect = 6e-67, Method: Composition-based stats. Identities = 88/382 (23%), Positives = 142/382 (37%), Gaps = 45/382 (11%) Query: 9 QYEQQLAEKVDRLRQMMLAFQV---PNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ 65 +YE QL K ++ QM V + P YR +A+ + L + + Sbjct: 99 KYEAQLTFKQHQIEQMFKKVNVEVDVKPTLGMENPTKYRNKAQVPVQLINGRLETGFYRR 158 Query: 66 QTKERMRIDYFMPGSLLINA-----------LMIEMMATIRLEPLLRAKLFQIDYLTSQS 114 + + + D F ++ L I + ++R + + Y + + Sbjct: 159 GSHKLVPTDDFYIQDPKVDEAVVVTRDILRDLGISAYDEETNKGVVRHIMARRGYYSHEL 218 Query: 115 DQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKI-------CLDRDYV 167 IVT + L DA E A RL+ L K I I + I + + Sbjct: 219 MVVIVTNT--KKLPDAT-EIATRLQAKLPELKSFIHNINNHDTNVIMGQWNETIWGANEI 275 Query: 168 DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLV 226 ++L + NSF Q N + + D +++ Y G G +L Sbjct: 276 HDQLMDKD----FVIGPNSFYQVNPQTTATLYTLAAEKAGLKKTDIVVDAYSGIGTITLS 331 Query: 227 LARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDID 286 +A ++ VE+ + +VE A N NH+ NV V + E + Sbjct: 332 IADKVKKIYGVEVVETAVEDAEKNAKNNHIENVSFVTADAPEQMVKWAED---------- 381 Query: 287 IHSYRFKTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDL-SILSTTHTIE- 342 + +FVDPPR GL + V A +YISCNP +L RD IL+ I+ Sbjct: 382 --GLKPNVVFVDPPRKGLTAELIFAVSAMKPETFVYISCNPATLARDAVQILAEGFKIDG 439 Query: 343 RLALFDQFPYTRHMECGVLLVR 364 + DQFP T H+E + R Sbjct: 440 AVQPIDQFPQTTHVESITVFKR 461 >gi|315651321|ref|ZP_07904348.1| TrmA family RNA methyltransferase [Eubacterium saburreum DSM 3986] gi|315486420|gb|EFU76775.1| TrmA family RNA methyltransferase [Eubacterium saburreum DSM 3986] Length = 418 Score = 259 bits (661), Expect = 6e-67, Method: Composition-based stats. Identities = 84/388 (21%), Positives = 150/388 (38%), Gaps = 35/388 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHI 61 + Y + + EK+ ++ + + + S P HYR + + + Sbjct: 26 GCDYINSSYNKHVKEKLAIANSLIKKYGKFDGIVSMSNPYHYRNKVSAVFGFENKKIIAG 85 Query: 62 MFDQQTKERMRIDYFMP----GSLLINALM-------IEMMATIRLEPLLRAKLFQIDYL 110 +++ T + + S +I + I+ LR L ++ Sbjct: 86 TYEKNTHRVVDTKNCLIEDKKASAIIQTIKKMCISFKIKAYDEDSGFGFLRHVLIRVGK- 144 Query: 111 TSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD---YV 167 +S Q +V L+ ++ LR +Q I N + + DR+ Y Sbjct: 145 --KSGQIMVVLVTSNVIFQNKNAFIKVLRGEHPEITTIVQNINNKNTSMVLGDREIVMYG 202 Query: 168 DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSL 225 +T L ++ SF Q N + + G+QGD LL+ Y G G L Sbjct: 203 KGYITDELCGLTFKISPKSFYQVNRDQTEKLYSQAIE-YAGLQGDEVLLDAYSGIGTIGL 261 Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285 + ++ V++VE+ K S + A N N++ NVK + F D+ Sbjct: 262 IASKCVKEVISVELNKDSHKDAITNAKINNIKNVKFYNADATAFIN------------DL 309 Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST-THTIE 342 + + +DPPR+G D + V ++Y+SCNP++L RDL + + E Sbjct: 310 AAAGEKIDVVILDPPRTGSTDEFIAAVGRLKPKKVVYVSCNPETLARDLEVFKKHRYRFE 369 Query: 343 RLALFDQFPYTRHMECGVLLVRKPSGWH 370 + + D F +TRH+E VLL + S H Sbjct: 370 KGMVVDCFCHTRHVEGVVLLSKLDSKNH 397 >gi|288904724|ref|YP_003429945.1| RNA methyltransferase, TrmA family [Streptococcus gallolyticus UCN34] gi|288731449|emb|CBI13001.1| putative RNA methyltransferase, TrmA family [Streptococcus gallolyticus UCN34] Length = 450 Score = 259 bits (661), Expect = 6e-67, Method: Composition-based stats. Identities = 74/386 (19%), Positives = 138/386 (35%), Gaps = 38/386 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54 ++ +Y++QL K D + Q + F+ + + P HYR + +F Sbjct: 81 GCQIMHLRYDKQLEFKDDLIAQSLKKFKPAGYENYDIRHTLGMEVPYHYRAKLQFQTRSF 140 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----------LRAKL 104 + +F++ + + I + L A++ + + + +R + Sbjct: 141 KGSVKSGLFEEGSHRLVDIRDCLVQDELTQAIINRVTELLEKHHIPIYDERKIAGVRTVM 200 Query: 105 FQIDYLTSQSDQAIVT--LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162 + T+Q +T ++ + ++ KT++ Sbjct: 201 IRKAIATNQVQLIFITSRDVFLAPVIKQLTAEFDMIKGIAVNVNRSKSSEIYGEKTEVIW 260 Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNG 221 + E + + +F Q N + +AA + D +++ YCG G Sbjct: 261 GNADISEEVL----DYQFSLSPRAFYQLNPQQTEVLYGQAVAALDVSENDHVIDAYCGVG 316 Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281 A V ++I +V A+ N N +E +E Sbjct: 317 TIGFAFAAKVKSVRGMDIIPEAVADAKKNAQRMGFENTHYEAGRVEEIIPKWYKE----- 371 Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILSTTH 339 YR + VDPPR+GLDD + + Y ++Y+SCN +L RDL LS + Sbjct: 372 -------GYRADALIVDPPRTGLDDKLLDTILKYQPAKMVYVSCNTATLARDLVKLSKVY 424 Query: 340 TIERLALFDQFPYTRHMECGVLLVRK 365 + + D FP+T E V LVRK Sbjct: 425 DVHYIQSVDMFPHTARTEAVVKLVRK 450 >gi|282889691|ref|ZP_06298230.1| hypothetical protein pah_c004o034 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281500265|gb|EFB42545.1| hypothetical protein pah_c004o034 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 449 Score = 259 bits (661), Expect = 6e-67, Method: Composition-based stats. Identities = 82/389 (21%), Positives = 151/389 (38%), Gaps = 50/389 (12%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56 L+ Y +QL K + + + + + + YR + + + D Sbjct: 81 GCQLMHLGYPKQLEMKRQIVLNALERIGHLKNISIDPCVSSPQELEYRNKIQLPVMMKPD 140 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLF 105 L ++ + + + +D+ + L+ I + +LR L Sbjct: 141 GLTVGLYARNSHTIIPVDHCLIHCEQGENVYQSVLKLLKQSDIAPYDERTGKGVLRHLLI 200 Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC---- 161 + TS+S +V L+ + + + A ++ A K IQ I R I Sbjct: 201 KSALQTSES---LVILVTSQEKCTSLQALAQQIMQACPEVKGVIQNINRKRDNVILGTDW 257 Query: 162 ---LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELY 217 + Y+ E + + ++F Q N + + VL+ A L+ + Sbjct: 258 HTLAGKSYIREMICDHH----FHISPSAFFQVNPAQAESIYQHVLSLADLDKTKTFLDAF 313 Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277 CG G +L+ A + +E ++E A N N ++N ++ Q+ Sbjct: 314 CGVGTMTLIAAGQAKECIGIECVPQAIEDANANAQLNQISNAVFYCDHAESKIQS----- 368 Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSIL 335 LKDID +F++PPR G +++ + ++ ILY+SC+P +L RDL IL Sbjct: 369 ----LKDID-------VVFLNPPRKGCEESLLNRLKIVKPETILYMSCDPATLARDLKIL 417 Query: 336 -STTHTIERLALFDQFPYTRHMECGVLLV 363 + IE++ FD FP T H+E V L Sbjct: 418 VQHGYQIEQVTPFDMFPQTAHVETVVKLT 446 >gi|323705906|ref|ZP_08117477.1| RNA methyltransferase, TrmA family [Thermoanaerobacterium xylanolyticum LX-11] gi|323534704|gb|EGB24484.1| RNA methyltransferase, TrmA family [Thermoanaerobacterium xylanolyticum LX-11] Length = 452 Score = 259 bits (661), Expect = 6e-67, Method: Composition-based stats. Identities = 89/392 (22%), Positives = 162/392 (41%), Gaps = 46/392 (11%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWHDGDD 57 L Y+ QL K D ++ ++ + + + + YR + E+ D + Sbjct: 79 GCAYLNINYKDQLKLKEDYVKSLLDEAGIKGFEFLGIVGSPDVFSYRNKMEYTFGIDDNG 138 Query: 58 LYHI-------MFDQQTKERMRIDYFMPGSLLINALMIEMMATIRL------EPLLRAKL 104 + + +D T E RI + L N L ++ E +R + Sbjct: 139 IMQLGLHIKGRYYDIITTEDCRIVDSDFIACLKNVLDYAKQHSLPHYNIKTHEGYMRNLV 198 Query: 105 FQIDYLTSQSDQAIVTLIYHR----LLDDAWRECAIR--LRDALHARKYQIQLIGRANKT 158 + T + IVT + L + ++ L LH + K Sbjct: 199 IRKAANTGEILINIVTTSQKKHDFSKLASELKNIKLKGKLVGILHTVNDSYSDAVKCEKL 258 Query: 159 KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELY 217 ++ RDY+ E + L ++ SF Q N+ + I +L +LY Sbjct: 259 EVLYGRDYIMEEIL----GLKFKISAFSFFQTNSKGAERLYSVAREFAGDISNKILFDLY 314 Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277 CG G +++A +V+ +E+ + +V+AAR N N +NN++ + + Sbjct: 315 CGTGTIGMIMAPLSKKVVGIELVEEAVDAARENARLNGLNNIQFIAGDVAQ--------- 365 Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDD-ATVGMVQAYP-HILYISCNPDSLCRDLSIL 335 R+K+I+ + + +DPPR G++ A + +++ P I+Y+SCNP SL RDL +L Sbjct: 366 ---RIKEIN---DKPDVVVLDPPRPGVNPKAVMDIIKLNPEKIIYVSCNPVSLVRDLKML 419 Query: 336 -STTHTIERLALFDQFPYTRHMECGVLLVRKP 366 + +E++ D FP+T H+E VLL K Sbjct: 420 IQRQYKVEKVKCVDMFPHTYHIETVVLLTNKK 451 >gi|302875488|ref|YP_003844121.1| RNA methyltransferase, TrmA family [Clostridium cellulovorans 743B] gi|307687940|ref|ZP_07630386.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium cellulovorans 743B] gi|302578345|gb|ADL52357.1| RNA methyltransferase, TrmA family [Clostridium cellulovorans 743B] Length = 455 Score = 259 bits (661), Expect = 6e-67, Method: Composition-based stats. Identities = 78/394 (19%), Positives = 160/394 (40%), Gaps = 47/394 (11%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIW--HDG 55 T YE+QL K +++ ++ + + E HYR + EF G Sbjct: 81 GCTHQYLDYEKQLEFKKNQVLKLFEKKNITGFEFEGIEGSPEMFHYRNKMEFTFGDMEKG 140 Query: 56 DDLYHIMFDQQ-TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLT--- 111 ++ + + + + +D ++ E + ++ + + ++ + Sbjct: 141 GEITLGLHARGMSFGILTVDQCYLVEEDYRTILKETLEYVKEKGFPKYRVMSREGFMRNL 200 Query: 112 -----SQSDQAIVTLIYHRLLDDAWRECAIRL---------RDALHARKYQIQLIGRANK 157 + + ++ ++ L++ + E RL + LH + ++ Sbjct: 201 IIRQGKNTRELMINVVTTSQLNEDFIELKERLLKLPLENKIKGILHTINDSFSDAVKIDE 260 Query: 158 TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-EL 216 K+ +DY+ E L L ++ SF Q N+ + V ++ +L Sbjct: 261 LKVLYGQDYITENLL----GLNFKISPLSFFQTNSKGAEKLYSIVKEYIGESDDKVVFDL 316 Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276 YCG G ++A +V+ +E+ + +V+AA N N + N K + E + ++ Sbjct: 317 YCGTGTIGQIVAPKAKKVIGLELIEEAVKAAEINAELNGLTNCKFIAGDVAETIKTIKE- 375 Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSI 334 + TI +DPPR+G+ A + V + +I+Y+SCNP+SL +L Sbjct: 376 --------------KPDTIILDPPRAGVSSAAMKYVIDFDAKNIVYVSCNPESLVVNLKE 421 Query: 335 LS-TTHTIERLALFDQFPYTRHMECGVLLVRKPS 367 L + ++++ + D FP+T H+E V L RK S Sbjct: 422 LEAAGYRVDKVRVKDMFPHTPHVETVVRLQRKHS 455 >gi|326692440|ref|ZP_08229445.1| RNA methyltransferase [Leuconostoc argentinum KCTC 3773] Length = 464 Score = 259 bits (661), Expect = 7e-67, Method: Composition-based stats. Identities = 76/382 (19%), Positives = 137/382 (35%), Gaps = 39/382 (10%) Query: 9 QYEQQLAEKVDRLRQMMLAFQV---PNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ 65 +Y QL K ++ Q+ + + I ++P YR +A+ + L + + Sbjct: 99 KYAAQLEFKQRQVEQLFKKVNIDVAVSPTIGMTDPTKYRNKAQVPVQEINGRLETGFYRR 158 Query: 66 QTKERMRIDYFMPGSLLINA-----------LMIEMMATIRLEPLLRAKLFQIDYLTSQS 114 + + ++ F ++ L + + ++R + + Y + + Sbjct: 159 GSHNLVPVEDFYIQDPKVDEAVTVTRDILRDLGLSAYDETTKKGVVRHIMARRGYYSHEL 218 Query: 115 DQAIVTLIYHRLLDDA----WRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDER 170 IVT D + L+ +H + + + D + ++ Sbjct: 219 MVVIVTNTKRLPQADEIATRLQAKLPELKSFIHNINHDDTNVIMGQWNETIWGADDIHDQ 278 Query: 171 LTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLAR 229 L + NSF Q N + ++ ++ Y G G +L +A Sbjct: 279 LMGKD----FVIGPNSFYQVNPQTTATLYTLAAEKAGLKPTNIAVDAYSGIGTITLSIAD 334 Query: 230 HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHS 289 V VE+ + +V A N N ++NV V + E A E Sbjct: 335 KVKHVYGVEVVENAVADAEQNARNNQIDNVTFVTADAPEQMVAWAAE------------G 382 Query: 290 YRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDL-SILSTTHTIER-LA 345 + +FVDPPR GL + V A +YISCNP +L RD IL+ I+ + Sbjct: 383 LKPNVVFVDPPRKGLTAELISAVAAMAPETFVYISCNPATLARDAVQILAEGFEIDGPVQ 442 Query: 346 LFDQFPYTRHMECGVLLVRKPS 367 DQFP T H+E + R + Sbjct: 443 PLDQFPQTTHVETITVFKRVKA 464 >gi|309800304|ref|ZP_07694477.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus infantis SK1302] gi|308116088|gb|EFO53591.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus infantis SK1302] Length = 454 Score = 259 bits (661), Expect = 7e-67, Method: Composition-based stats. Identities = 67/379 (17%), Positives = 149/379 (39%), Gaps = 40/379 (10%) Query: 10 YEQQLAEKVDRLRQMMLAF-QVPNLQI----FRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 Y +QL K +++ + + +++I PI YR +A+ + L F Sbjct: 88 YPEQLKFKTKQVKDSLYKIAGISDVEIADTLGMENPIKYRNKAQVPVRRVNGVLETGFFR 147 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIR-----------LEPLLRAKLFQIDYLTSQ 113 + + + M ++ F +I+ +++ + +R L+R + + + + Q Sbjct: 148 KNSHDLMPLEDFYIQDPVIDQVIVALRDLLRRYDLKPYDEKEQSGLIRNLVVRRGHHSGQ 207 Query: 114 SDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDE 169 +VT + + + + + + Q + + DY+ + Sbjct: 208 IMIILVTTRPKVFRVEQVIEQLIKQFPEIVSVMQNINDQNTNAIFGKEWRTLYGPDYITD 267 Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLA 228 ++ ++ +F Q N + + + + + D+ ++ Y G G L +A Sbjct: 268 QMLGND----FQISGPAFYQVNTEMAEKLYQTAIDFAELKDNDVVIDAYSGIGTIGLSVA 323 Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288 ++ V VE+ +VE ++ N N++ N V +++ + +E Sbjct: 324 KYVKEVHGVEVIPEAVENSQKNAVLNNITNAHYVCDTAENAMKNWLKE------------ 371 Query: 289 SYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST-THTIERLA 345 + I VDPPR GL ++ + I YISCN ++ RD+ + + ++++ Sbjct: 372 GIQPTAILVDPPRKGLTESFIKASVQTGANRIAYISCNVATMARDIKLYQELGYELKKVQ 431 Query: 346 LFDQFPYTRHMECGVLLVR 364 D FP T H+E LL + Sbjct: 432 PVDLFPQTHHVEAVALLSK 450 >gi|150391401|ref|YP_001321450.1| RNA methyltransferase [Alkaliphilus metalliredigens QYMF] gi|149951263|gb|ABR49791.1| RNA methyltransferase, TrmA family [Alkaliphilus metalliredigens QYMF] Length = 451 Score = 258 bits (660), Expect = 7e-67, Method: Composition-based stats. Identities = 79/383 (20%), Positives = 154/383 (40%), Gaps = 47/383 (12%) Query: 10 YEQQLAEKVDRLRQMMLA----FQVPNLQIFRSEPIHYRMRAEFHIW--HDGDDLYHIMF 63 YE QL EK +++++ ++ E YR + EF G L M Sbjct: 88 YEHQLKEKEAQVKRLFEEDNIQYENWLPIEGSPEAFGYRNKMEFSFGDEEKGGPLTLGMH 147 Query: 64 DQQTKE-RMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKLFQIDYLT 111 + + +D + +++ ++ + E LR + + + T Sbjct: 148 KRGKHHDIVTVDQCLIMDEDFRSILTVILEFFKQREIPHYSSTRHEGYLRHLVVRKAHYT 207 Query: 112 SQSDQAIVTLIYHRLLDDAWRECAI------RLRDALHARKYQIQLIGRANKTKICLDRD 165 + +VT + + E +L +LH + + ++++T + + +D Sbjct: 208 KEILINLVTTTQSDINIEGLVEEIKALSLKGKLVGSLHTFNDNLADMVQSDRTDVLIGQD 267 Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFS 224 Y E L L ++ SF Q N+ + V ++ +LYCG G Sbjct: 268 YFSEELL----GLRFKISAFSFFQTNSLGAEKLYSIVRDFVGQADDQVVFDLYCGTGTIG 323 Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284 ++A+ +V+ +EI + +V AA N N + N + K K Sbjct: 324 QIVAQKAKKVIGIEIVEDAVTAANENAKLNGLTNCHFIAGDVK---------------KK 368 Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILST-THTI 341 I + + I +DPPR+G+ A + + + I+Y+SCNP S+ +DL++L + + Sbjct: 369 IKELNDKPDIIILDPPRAGIHAAALQDIIDFNTEKIVYVSCNPKSMVKDLAMLEAHGYQV 428 Query: 342 ERLALFDQFPYTRHMECGVLLVR 364 +++ D FP+T H+E LL + Sbjct: 429 KKVKCMDMFPHTPHVEAVTLLTK 451 >gi|257463545|ref|ZP_05627938.1| tRNA (Uracil-5-) -methyltransferase [Fusobacterium sp. D12] gi|317061100|ref|ZP_07925585.1| tRNA (Uracil-5-)-methyltransferase [Fusobacterium sp. D12] gi|313686776|gb|EFS23611.1| tRNA (Uracil-5-)-methyltransferase [Fusobacterium sp. D12] Length = 453 Score = 258 bits (660), Expect = 7e-67, Method: Composition-based stats. Identities = 80/387 (20%), Positives = 159/387 (41%), Gaps = 34/387 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIF-----RSEPIHYRMRAEFHIWHDGD 56 + +YE QL K + +++++ N ++ E +YR + Sbjct: 80 GCDFAMLKYEAQLRCKTNMVKEVIEKIGKLNGKLVLDCLPSPEEKNYRNKVIEPFSQKKG 139 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMI-------EMMATIRLEPLLRAKLFQIDY 109 + F +++ E ++ M S L N ++ E T+ E + L I Sbjct: 140 KIISGFFQKRSHEVFEVEENMLNSKLGNRIIEVFKMIANEEKLTVYDEKKHQGLLRNIMV 199 Query: 110 LTSQSDQAI-VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR---- 164 T+ +A+ V ++ + L+++ + + + + K + L KT + L Sbjct: 200 RTNSFQEAMLVLVVNTKKLEESLKRILLEMTQRIPELK-SLYLSFNTKKTNVVLGDKNIC 258 Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNF 223 + ++ L + + SF Q N H+ E L+ I+ ++++ Y G G Sbjct: 259 IWGEKTLKEELFGIEFHISPTSFFQINVPQTKHLYEKALSLIPDIENKNVVDAYSGTGTI 318 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 ++L++ +V A+EI + + N + N+ + + + + +E Sbjct: 319 GMLLSKRAKKVYAIEIVESASRDGEKTAKENRITNIDFICGAVEVELDRLLKE------- 371 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST-THT 340 + I DPPR G++++ + V P ++YISCNP +L RDL I++ + Sbjct: 372 -----GKQLDAIVFDPPRKGIEESILRKVAEVGIPEMVYISCNPSTLARDLKIMADCGYQ 426 Query: 341 IERLALFDQFPYTRHMECGVLLVRKPS 367 + + FD FP T H+EC LL R S Sbjct: 427 VGEIQPFDMFPQTSHVECIALLQRVKS 453 >gi|258508829|ref|YP_003171580.1| RNA methyltransferase [Lactobacillus rhamnosus GG] gi|257148756|emb|CAR87729.1| RNA methyltransferase [Lactobacillus rhamnosus GG] gi|259650133|dbj|BAI42295.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus rhamnosus GG] Length = 455 Score = 258 bits (660), Expect = 8e-67, Method: Composition-based stats. Identities = 76/384 (19%), Positives = 138/384 (35%), Gaps = 47/384 (12%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHDGDDLYHIM 62 Y QL K D + Q + F+ Q + P HYR +A+F + + + Sbjct: 91 YPAQLRFKRDVVAQALAKFKPLGWQHYDLKPTSGMTHPTHYRNKAQFPVREIDGHVRAGL 150 Query: 63 FDQQTKERMRIDYFMPG-----------SLLINALMIEMMATIRLEPLLRAKLFQIDYLT 111 + + + + +F+ L+ L I + + +++ + + + T Sbjct: 151 YAPGSHRLIPLTHFLTQAPLTMKVVTTLCQLLEDLQIPIYNEKKHAGIVKTLVVRESFST 210 Query: 112 SQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIG-------RANKTKICLDR 164 Q VT I + + + L Q I +++ + Sbjct: 211 G---QVQVTFITNSAKLPKQAQLITTIAAQLPMVVSIAQNINPGNTSLIWGKDSRLLAGQ 267 Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNF 223 Y+ E L+ ++ +F Q N + A + D L++ YCG G Sbjct: 268 PYIQETLS----GRTFQLSPQAFLQLNPKQTEQLYAIAKDALQLAPDDTLIDAYCGIGTV 323 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 + LA + ++ ++ A+ N N NN ++ +E Sbjct: 324 GMSLANRHQSIYGMDTIPEAIADAKANAKNNGFNNTHYFVGKAETLFPKWLKE------- 376 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCRDLSILSTTHTI 341 R + VDPPRSGL+ + ++Q P YISCNP +L RDL L+ + + Sbjct: 377 -----GIRPNAVIVDPPRSGLERPFIDALLQLSPQKFAYISCNPSTLARDLVPLAKHYQV 431 Query: 342 ERLALFDQFPYTRHMECGVLLVRK 365 + + D FP T E V R+ Sbjct: 432 DWIQSIDMFPQTARCEAVVKFTRR 455 >gi|290579884|ref|YP_003484276.1| putative RNA methyltransferase [Streptococcus mutans NN2025] gi|254996783|dbj|BAH87384.1| putative RNA methyltransferase [Streptococcus mutans NN2025] Length = 459 Score = 258 bits (660), Expect = 8e-67, Method: Composition-based stats. Identities = 78/388 (20%), Positives = 138/388 (35%), Gaps = 39/388 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54 ++ +Y++QL K D L+Q + F+ + I P HYR + +F Sbjct: 81 GCQIMHLRYDKQLDFKKDLLKQALKKFKPQGYETYDVRATIGMEHPQHYRAKLQFQTRKF 140 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPG-----------SLLINALMIEMMATIRLEPLLRAK 103 G + +F +Q+ + I + L++ I + R +R Sbjct: 141 GGSVRVGLFKEQSHHLVDIKDCLIQDELTQKIVNRVCQLLDDYNIPVYDERRHFAGVRTI 200 Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLD--DAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161 + + T+Q VT L+ ++ KT+I Sbjct: 201 MVRKSQATNQVQLIFVTSKEVNLVGIIRDLTGYFPEIKTVAVNFNSSKSSAIYGQKTEIL 260 Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGN 220 D + E + + +F Q N + L A D L++ YCG Sbjct: 261 WGIDSISEEVL----DYSFSLSPRAFYQLNPKQTQVLYHQALQALDVTAEDHLIDAYCGV 316 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G+ L A V ++I ++ A+ N N ++ ++ Sbjct: 317 GSIGLAFANKVKSVRGMDIIPEAITDAKRNAERMGYTNTYYEMGKAENIIPKWYKD---- 372 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTT 338 Y+ + VDPPR+GLD+ + + Y ++YISCN +L RDL L Sbjct: 373 --------GYQASALIVDPPRTGLDEKLLKTLLTYQPEKMVYISCNVSTLARDLVQLVKI 424 Query: 339 HTIERLALFDQFPYTRHMECGVLLVRKP 366 + + + D FP+T E V LV++ Sbjct: 425 YEVNYIQSVDMFPHTARTEAVVKLVKRK 452 >gi|306832906|ref|ZP_07466038.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus bovis ATCC 700338] gi|304424805|gb|EFM27939.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus bovis ATCC 700338] Length = 450 Score = 258 bits (660), Expect = 8e-67, Method: Composition-based stats. Identities = 71/386 (18%), Positives = 139/386 (36%), Gaps = 38/386 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54 ++ +Y++QL K D + Q + F+ + + P HYR + +F Sbjct: 81 GCQIMHLRYDKQLEFKDDVIAQSLTKFKPAGYENYDIRHTLGMEVPYHYRAKLQFQTRSF 140 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----------LRAKL 104 + +F++ + + I + L A++ + + + +R + Sbjct: 141 KGSVKSGLFEEGSHRLVDIRDCLVQDELTQAIINRVTELLEKHHIPIYDERKITGVRTVM 200 Query: 105 FQIDYLTSQSDQAIVT--LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162 + T+Q +T ++ + ++ KT++ Sbjct: 201 IRKAIATNQVQLIFITSRDVFLAPVIKQLTAEFDMIKGIAVNVNRSKSSEIYGEKTEVIW 260 Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNG 221 + E + + +F Q N + +AA + D +++ YCG G Sbjct: 261 GNADISEEVL----DYQFLLSPRAFYQLNPQQTEVLYGQAVAALDVSENDHVIDAYCGVG 316 Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281 A V ++I ++ A+ N N +++ +E Sbjct: 317 TIGFAFAAKVKSVRGMDIIPEAIADAKKNAQRMGFENTHYEAGRAEDIIPKWYKE----- 371 Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILSTTH 339 YR + VDPPR+G+DD + + Y ++Y+SCN +L RDL LS + Sbjct: 372 -------GYRADALIVDPPRTGIDDKLLDTILKYQPAKMVYVSCNTATLARDLVKLSKVY 424 Query: 340 TIERLALFDQFPYTRHMECGVLLVRK 365 + + D FP+T E V LVRK Sbjct: 425 DVHYIQSVDMFPHTARTEAVVKLVRK 450 >gi|306833840|ref|ZP_07466965.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus bovis ATCC 700338] gi|304424034|gb|EFM27175.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus bovis ATCC 700338] Length = 456 Score = 258 bits (660), Expect = 8e-67, Method: Composition-based stats. Identities = 76/379 (20%), Positives = 149/379 (39%), Gaps = 40/379 (10%) Query: 10 YEQQLAEKVDRLRQMMLAF-QVPNLQI----FRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 Y +QL K ++ + + ++++ + P YR +A+ + L F Sbjct: 88 YAEQLKFKRKQVMDNLYKTAGISDVEVSETLGMAHPYAYRNKAQVPVRRVNGQLETGFFR 147 Query: 65 QQTKERMRIDYFMPGSLLINAL---MIEMMATIRLEP--------LLRAKLFQIDYLTSQ 113 + + + M I + + I+ L +++ L+P L+R + + + + Sbjct: 148 KHSHDLMPISDYYIQNKEIDRLINFTRDLLRRFDLKPYDEKEQTGLIRNLVVRRGHYSG- 206 Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD----YVDE 169 + ++ + R + ++ A K +Q I N T ++ Y + Sbjct: 207 --EMMLVFVTTRPKIFRIEQIIEKIVAEFPAVKSIVQNINDKN-TNAIFGKEFKTLYGKD 263 Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLA 228 + + Y SF Q N + + + + + D +++ Y G G L A Sbjct: 264 TIVDSMLGNQYEISARSFYQVNTEMAEKLYQTAIDFSDLTPKDIVIDAYSGIGTIGLSFA 323 Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288 ++ V VE+ + +VE A+ N A N + N + ++ ++ Sbjct: 324 KNVKAVYGVEVIEEAVEDAKRNAALNSITNAHYIADPAEHAMATWSKD------------ 371 Query: 289 SYRFKTIFVDPPRSGLDDATVGM-VQAYP-HILYISCNPDSLCRDLSILST-THTIERLA 345 + I VDPPR GL + + V P I YISCNP ++ RD+ + + + ++ Sbjct: 372 GIKPSVILVDPPRKGLTENFIKASVAMQPEKITYISCNPATMARDIKLYQELGYKLIKVQ 431 Query: 346 LFDQFPYTRHMECGVLLVR 364 D FP T H+E LLVR Sbjct: 432 PVDLFPNTHHVEAVSLLVR 450 >gi|227529794|ref|ZP_03959843.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus vaginalis ATCC 49540] gi|227350278|gb|EEJ40569.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus vaginalis ATCC 49540] Length = 464 Score = 258 bits (660), Expect = 8e-67, Method: Composition-based stats. Identities = 78/382 (20%), Positives = 137/382 (35%), Gaps = 42/382 (10%) Query: 10 YEQQLAEKVDRLRQMMLAFQV-------PNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIM 62 Y QL K + + F+ I YR +A F + + + Sbjct: 99 YPAQLRFKRQVVLDSLEKFKPYGYRNYDVRPTIAAPHEYGYRNKASFQVRMIDGHVAAGL 158 Query: 63 FDQQTKERMRIDYFMPG-----------SLLINALMIEMMATIRLEPLLRAKLFQIDYLT 111 + + + + I I L I + R +++ + + T Sbjct: 159 YKANSHDLVDIQECAVQMPNTMKVIRTVVQAIEDLQIPVYDEERNSGIIKTLVVRESAAT 218 Query: 112 SQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYV 167 + ++T L + R L +A +E ++ + + + ++Y+ Sbjct: 219 GEVQLTLITNTSKLPHKRQLLEAIQEQLPKVVSVMQNVNPGDTPLIWGEQMIHLAGQEYI 278 Query: 168 DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLV 226 E L L +R SF Q N + E A + GD L++ Y G G L Sbjct: 279 TESLM----GLDFRLSARSFLQLNPEQTETLYEEAAKALELSPGDTLIDAYAGIGTIGLS 334 Query: 227 LARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDID 286 LA V +E +V A+ N N + N S+++ R+E Sbjct: 335 LANRVKEVWGMETIPEAVADAKQNANLNGITNAHYEVGSAEDVIPQWRKE---------- 384 Query: 287 IHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILSTTHTIERL 344 + F + VDPPR+GLD+ + + + Y+SCN SL R+L L++ + ++ + Sbjct: 385 --GHHFDALVVDPPRTGLDNDLIEQIIKERPAKFAYVSCNMASLARNLGRLTSVYHVDYI 442 Query: 345 ALFDQFPYTRHMECGVLLV-RK 365 D P T E V L RK Sbjct: 443 QPVDMMPQTTRCEAVVKLSIRK 464 >gi|315924682|ref|ZP_07920899.1| 23S rRNA (uracil-5-)-methyltransferase [Pseudoramibacter alactolyticus ATCC 23263] gi|315621581|gb|EFV01545.1| 23S rRNA (uracil-5-)-methyltransferase [Pseudoramibacter alactolyticus ATCC 23263] Length = 458 Score = 258 bits (660), Expect = 9e-67, Method: Composition-based stats. Identities = 77/348 (22%), Positives = 139/348 (39%), Gaps = 38/348 (10%) Query: 35 IFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPG-------SLLINALM 87 + +HYR +A+F I +G + + + + + I + + L++N + Sbjct: 128 VSADSAVHYRNKAQFKISEEG----IGFYAKGSHQVIPIAHCLNQMTPNDDLILILNQWV 183 Query: 88 IEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHA-RK 146 + I E L I ++ +VTLI L A RL+++L Sbjct: 184 KDSQIPIYREDSGTGNLRGILVRANRRGDIMVTLIAKTLSGVNTERLARRLQESLSELVS 243 Query: 147 YQIQLIGR------ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLE 200 + I + +T++ + E L ++ SF Q N + Sbjct: 244 FSININPNRGNRVLGEETRVIFGAPTISETLCGRE----FQISPASFFQVNTEQAEKLYR 299 Query: 201 WVLA-ATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259 V+ A Q + +LYCG G + +A +V +E ++ A+ N N+++N+ Sbjct: 300 QVIRYANLTGQESVFDLYCGTGTIGICMADRARKVTGIEAVPEAIADAKENARRNNIDNI 359 Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPH 317 + S++ RL D + VDPPR G + + P Sbjct: 360 QFFCGRSEKIMS--------ERLAAGDAA----DVVVVDPPRKGCARLLLETIVASGVPK 407 Query: 318 ILYISCNPDSLCRDLSILS-TTHTIERLALFDQFPYTRHMECGVLLVR 364 I+Y+SCNP +L RD L+ + +E + FD FP T H+E VL+++ Sbjct: 408 IVYVSCNPSTLARDCRCLADAGYRLEEVTPFDLFPGTGHVETVVLMLK 455 >gi|168186646|ref|ZP_02621281.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum C str. Eklund] gi|169295463|gb|EDS77596.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum C str. Eklund] Length = 450 Score = 258 bits (660), Expect = 9e-67, Method: Composition-based stats. Identities = 82/392 (20%), Positives = 150/392 (38%), Gaps = 49/392 (12%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMML-----AFQVPNLQIFRSEPIHYRMRAEFHIW--HD 54 + YE+QL K +++ ++ FQ +Q E +YR + EF Sbjct: 79 GCSHQFLSYEKQLEIKKEQVLKLFENANIDGFQFLGIQ-GSPEEFYYRNKMEFTFGDMEK 137 Query: 55 GDDLYHIMFDQQTK-ERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRA 102 G +L M Q + D N ++ ++ R E LR Sbjct: 138 GGELTLGMHAQGKSFGIISADVCKIVDSDFNLILKTVLEYFRAQGLPHYRIMSHEGYLRN 197 Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLR------DALHARKYQIQLIGRAN 156 + + T + +VT + E L LH + + +A+ Sbjct: 198 LVIRKGKNTKEIMVNLVTTSQKDFDLTEFTEMLKELNYEGELTGILHTINDSLSDVVQAD 257 Query: 157 KTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-E 215 K+ RDY+ E + L ++ SF Q N + V + ++ + Sbjct: 258 SMKVLFGRDYIMEEVL----GLKFKISPFSFFQTNTKGAEALYSIVREFMGDAKSKVVFD 313 Query: 216 LYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275 LYCG G + A + ++V+ +E+ + +V+AA N N + N + + + + ++ Sbjct: 314 LYCGTGTIGQIAAHNAEKVIGIELIEEAVKAANENAKLNGLTNCEFLAGDVAKVIKDIK- 372 Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLS 333 + I +DPPR G+ + V + I+Y+SCNP +L DL Sbjct: 373 --------------VKPDIIILDPPRPGVHPDALKYVTKFNAKDIIYVSCNPKTLVEDLK 418 Query: 334 IL-STTHTIERLALFDQFPYTRHMECGVLLVR 364 L + +E++ + D FP+T H+E V L + Sbjct: 419 YLIKEGYKVEKVKVKDMFPHTPHVESAVKLSK 450 >gi|307708648|ref|ZP_07645111.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus mitis NCTC 12261] gi|307615222|gb|EFN94432.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus mitis NCTC 12261] Length = 459 Score = 258 bits (659), Expect = 1e-66, Method: Composition-based stats. Identities = 69/379 (18%), Positives = 152/379 (40%), Gaps = 40/379 (10%) Query: 10 YEQQLAEKVDRLRQMMLAF-QVPNLQI----FRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 Y +QL K +++ + + ++++ P+ YR +A+ + L F Sbjct: 91 YPEQLKFKTKQVKDSLYKIAGIDDIEVAETLGMKNPVKYRNKAQVPVRRVNGVLETGFFR 150 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIR-----------LEPLLRAKLFQIDYLTSQ 113 + + + M ++ F +I+ +++ + +R L+R + + + + Q Sbjct: 151 KNSHDLMPLEDFFIQDPVIDEVVVALRDLLRRYDLKPYDEKEQAGLIRNLVVRRGHYSGQ 210 Query: 114 SDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDE 169 +VT + L + + + + Q + + +DY+ + Sbjct: 211 IMVILVTTRPKVFRVDQLIEQLIKQFPDITSVMQNVNDQNTNAIFGKEWRTLYGQDYITD 270 Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLA 228 ++ Y+ +F Q N + + + + + + D+ ++ Y G G L +A Sbjct: 271 QMLGTN----YQIAGPAFYQVNTEMAEKLYQTAIDFAELKEDDVVIDAYSGIGTIGLSVA 326 Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288 +H V VE+ +VE ++ N N+++N V +++ + ++ Sbjct: 327 KHVKEVYGVEVIPEAVENSKKNAQLNNISNAHYVCDTAENAMKNWLKD------------ 374 Query: 289 SYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST-THTIERLA 345 + I VDPPR GL ++ + I YISCN ++ RD+ + + + ++ Sbjct: 375 GIQPSLILVDPPRKGLTESFIKASSQTGADRIAYISCNVATMARDIKLYRELGYELNKVQ 434 Query: 346 LFDQFPYTRHMECGVLLVR 364 D FP T H+E LLVR Sbjct: 435 PVDLFPQTHHVEAVSLLVR 453 >gi|229541608|ref|ZP_04430668.1| RNA methyltransferase, TrmA family [Bacillus coagulans 36D1] gi|229326028|gb|EEN91703.1| RNA methyltransferase, TrmA family [Bacillus coagulans 36D1] Length = 468 Score = 258 bits (659), Expect = 1e-66, Method: Composition-based stats. Identities = 83/380 (21%), Positives = 155/380 (40%), Gaps = 45/380 (11%) Query: 10 YEQQLAEKVDRLRQMML--AFQV--PNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ 65 YE QL +K +++ + F I P HYR + EF DG H + Sbjct: 98 YEGQLKQKTAHVKEAIAAQGFDPALVRDTIGMDNPWHYRNKMEFTFAPDGSLGLHEQGNF 157 Query: 66 QTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKLFQIDYLTSQS 114 + + + ++ + + +E+ A ++ E LLR + + + T + Sbjct: 158 R--KVIPLETCLIAGKEMVDGTMEVAAWVKEHGLKGYDKDAHEGLLRHLMVRQSFATGEM 215 Query: 115 DQAI-VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIG-------RANKTKICLDRDY 166 A+ T L +A R+ A R+ K + L +A KT + RD+ Sbjct: 216 MLALFATKAPDGELAEAARDLAERITGKFPQVKSLLWLENTDWADRTQAEKTHVLSGRDF 275 Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSL 225 + + + YR ++F Q N +++ L + + + +++L+CG G FSL Sbjct: 276 IYDEMG----GYRYRIWFDTFFQTNPVQAQKLVDLALEMGRPEKTEKMIDLFCGVGTFSL 331 Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285 A + +EI + S+E+A+ N N ++N + +++ + L Sbjct: 332 PFADRVGELAGIEIVETSIESAKRNAKDNGISNTYFLAKDARKGIDEVLESFGNPEL--- 388 Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST-THTIE 342 + +DPPRSG + + I+Y+SCNPD+ D+ L + + Sbjct: 389 ---------LLLDPPRSGAGGKVMRKIGRAKPQRIVYVSCNPDTFATDIKELEPFGYKLT 439 Query: 343 RLALFDQFPYTRHMECGVLL 362 + D FP+T H+EC L+ Sbjct: 440 AVQPVDLFPHTVHVECVTLM 459 >gi|319947529|ref|ZP_08021760.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus australis ATCC 700641] gi|319746308|gb|EFV98570.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus australis ATCC 700641] Length = 450 Score = 258 bits (659), Expect = 1e-66, Method: Composition-based stats. Identities = 74/387 (19%), Positives = 140/387 (36%), Gaps = 40/387 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54 ++ +Y +QL K D L+Q + + + + +P +YR + +F Sbjct: 81 GCQIMHLKYSKQLEFKTDLLQQALKKYAPTGYENYLIHPTLGMEKPQYYRAKLQFQTRKF 140 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----------LRAKL 104 + ++ Q + + + + +I + + + + +R + Sbjct: 141 KGQVKAGLYAQNSHYLVELRDCLVQDPVIQEIANHVAELLTYYQIPISDDRNQFGVRTIM 200 Query: 105 FQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALH---ARKYQIQLIGRANKTKIC 161 + T Q Q IV L D + + + + KT+I Sbjct: 201 VRRARKTGQV-QMIVVTSRQLNLTDLVADLVKKYPEIVTVAVNLNTSKSSEIYGEKTQII 259 Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGN 220 ++ + E + + +F Q N + E V A + L++ YCG Sbjct: 260 WGQETIREGVL----DYEFSLSPRAFYQLNPEQTEVLYSEAVKALDVSPEDHLIDAYCGV 315 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G A V ++I ++E A+YN N +++E +E Sbjct: 316 GTIGFAFADKVKSVRGMDIIPEAIEDAKYNAKQMGFENTHYEAGTAEEIIPRWYKE---- 371 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTT 338 YR + VDPPR+GL + + A ++Y+SCN +L RDL L+ Sbjct: 372 --------GYRADAVIVDPPRTGLGVQLIDTLLRYAPQKMVYVSCNVSTLARDLVDLTKV 423 Query: 339 HTIERLALFDQFPYTRHMECGVLLVRK 365 + + + D FP+T E V LV+K Sbjct: 424 YDVVYIQSVDMFPHTARTEAVVKLVKK 450 >gi|172056678|ref|YP_001813138.1| RNA methyltransferase [Exiguobacterium sibiricum 255-15] gi|171989199|gb|ACB60121.1| RNA methyltransferase, TrmA family [Exiguobacterium sibiricum 255-15] Length = 461 Score = 258 bits (659), Expect = 1e-66, Method: Composition-based stats. Identities = 71/386 (18%), Positives = 143/386 (37%), Gaps = 40/386 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ------IFRSEPIHYRMRAEFHIWHDG 55 L YE QL K D +R N++ + YR +++F + +G Sbjct: 85 GCQLQHMSYEGQLRYKEDMVRNAFTKSTKLNVEKSDIRPTIGTTEWEYRNKSQFAVGKEG 144 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKL 104 + ++ + + ID + + ++N + + + + + ++R + Sbjct: 145 TQIVSGLYSANSNRLVAIDECIVQNKETLRVNKAVTKILNDYNVPVYNSAKQDGVIRNIV 204 Query: 105 FQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALH---ARKYQIQLIGRANKTKIC 161 + T + +V + + + ++ +T+I Sbjct: 205 VRTGIKTGEIQVVLVAFKDGFKDLEGLSRDIYDIPGVISVALNINDKMTSRVFGEQTEIL 264 Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGN 220 + ++E++ Y+ +F Q N M E V AA + +++ Y G Sbjct: 265 RGVERIEEKMG----EFTYQLSPRAFFQLNPEQAERMYGEIVKAAALTGEERVVDAYAGV 320 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G+ L +A V +EI + +VE A ++ N+ + V ++ + +E Sbjct: 321 GSIGLWIANGAKEVRGMEIVEEAVEDATAHMKQYGFNHAQYVVGKAETWIPRWVKE---- 376 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-ST 337 + VDPPRSG D + + I+Y+SCNP +L RD L Sbjct: 377 --------GWIPDVFIVDPPRSGCDTQLLNAMISSKAKKIIYVSCNPQTLARDCDHLMKA 428 Query: 338 THTIERLALFDQFPYTRHMECGVLLV 363 + + + +D FP T H+E V+L Sbjct: 429 GYKVSYIQPYDMFPQTAHVEAIVVLE 454 >gi|253699961|ref|YP_003021150.1| RNA methyltransferase, TrmA family [Geobacter sp. M21] gi|251774811|gb|ACT17392.1| RNA methyltransferase, TrmA family [Geobacter sp. M21] Length = 447 Score = 258 bits (659), Expect = 1e-66, Method: Composition-based stats. Identities = 88/389 (22%), Positives = 152/389 (39%), Gaps = 39/389 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56 L+ +Y QLA K + + + I + + YR A+ + + Sbjct: 75 GCGLMQMRYPAQLAWKKALVTRQFRRYASLSEVAIKETIGSPKELGYRNTAKLVVAGKNN 134 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINAL-----------MIEMMATIRLEPLLRAKLF 105 D ++ + T + ++I+ LIN + +++ LLR + Sbjct: 135 DPVIGIYRRNTHDVLQIEDCGLHHPLINKVVKAAKAGIKKGKVQIYNPKSEMGLLRYLVV 194 Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD 165 ++ +S+QA+V L+ + A ++ A+ Q I + I ++D Sbjct: 195 RV---AEKSNQAMVVLVTTDQGYNEMHHLAKFIQQAVPEVAVVAQNINTSTGNVIFGNKD 251 Query: 166 YVD---ERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNG 221 + L I+ +SF Q N+G + E V A ++++YCG G Sbjct: 252 RSITKAQTLKAFVGDKIFNLSPHSFFQVNSGAARIIYEKVRELANLKGTERVIDVYCGIG 311 Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281 SL LA V+ +E + +V A N A N V N + + E Sbjct: 312 GISLFLADQAREVVGIEFVEAAVADATINAALNRVENCHFEAGDAVHLIDEIGEE----- 366 Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILST-T 338 + I ++PPR G D+ + V A P I+Y+SC+P++L RDL ILS Sbjct: 367 --------GGAELIVLNPPRKGCDEKVLRSVAAIKPPRIIYVSCSPETLARDLDILSGLG 418 Query: 339 HTIERLALFDQFPYTRHMECGVLLVRKPS 367 + + D FP T H+E LL K + Sbjct: 419 YRTVEVHPVDMFPQTVHVEDVALLELKQA 447 >gi|326693112|ref|ZP_08230117.1| RNA methyltransferase [Leuconostoc argentinum KCTC 3773] Length = 506 Score = 258 bits (658), Expect = 1e-66, Method: Composition-based stats. Identities = 90/390 (23%), Positives = 144/390 (36%), Gaps = 47/390 (12%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHDGDD 57 L Y QLA K D + Q + FQ I + P YR +A+F + GD Sbjct: 136 LEHMTYPAQLAFKKDVIAQALEKFQPRGWTDYDLRDTIGMANPYEYRNKAQFPVRKIGDK 195 Query: 58 LYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLFQ 106 L M+ + + + + + L++ L + + + ++ + + Sbjct: 196 LSVGMYKRSSHDLVDLPVVHTQDPATMKVLRTVRDLLDKLSVSIYNEDKNRGTVKTIVAR 255 Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQL-------IGRANKTK 159 + T + +VT D A E + AL Q I +T Sbjct: 256 ASHTTGEVQLTVVTNTDGFPGDAALIE---AINQALPEVTGIFQNFNPGRTSIVWGEETI 312 Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYC 218 +DY++E + ++ +F Q N + LAA D L++ Y Sbjct: 313 KLWGKDYIEETIMGK----TFQLSPRAFMQLNYTQMTVVYNEALAALDLTHADKLVDSYA 368 Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278 G G L LA V +EI +V+ A N NH+ N K +++E + E Sbjct: 369 GVGTIGLSLADKVGEVRGMEIIPEAVDDANINAEINHITNAKYEIGTAEELFPKWQAE-- 426 Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILS 336 + + VDPPR+GLD A + +YISCN SL RDL L+ Sbjct: 427 ----------GWIADALVVDPPRTGLDTALRREILRTKPEKFVYISCNASSLARDLVDLT 476 Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVRKP 366 + +E + D FP T E V L + Sbjct: 477 QAYQVEYIQSIDMFPQTARWEGVVKLTHRD 506 >gi|15673160|ref|NP_267334.1| hypothetical protein L193873 [Lactococcus lactis subsp. lactis Il1403] gi|50401787|sp|Q9CGB9|YLJE_LACLA RecName: Full=Uncharacterized RNA methyltransferase yljE gi|12724144|gb|AAK05276.1|AE006350_3 conserved hypothetical protein [Lactococcus lactis subsp. lactis Il1403] Length = 460 Score = 258 bits (658), Expect = 1e-66, Method: Composition-based stats. Identities = 74/380 (19%), Positives = 142/380 (37%), Gaps = 33/380 (8%) Query: 7 IDQYEQQLAEK----VDRLRQMMLAFQVPNLQIFRS-EPIHYRMRAEFHIWHDGDDLYHI 61 Y++Q+ K VD LR+ P L + + + I+YR +A+ + L Sbjct: 93 HLSYDEQVKFKHKQVVDILRKTAGKSDYPVLPVVEAIKTINYRNKAQIPVQMVDGLLTTG 152 Query: 62 MFDQQTKERMRIDYFMPGSLLINALMIEMMATI-------RLEPLLRAKLFQIDYLTS-Q 113 + + + + ++ F I+A+++ + E + L I + Sbjct: 153 FYRKNSHTLIPVEDFYIQHPEIDAVVLFLRDEFRKINLQAYDEKTRKGWLRNIVVRRAFH 212 Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYV----DE 169 + + ++TL+ E I +QL + L ++++ + Sbjct: 213 TGEMMITLVVTSKKLPEKVELVIDHLVERFTNIKSVQLNINSGTGSFILGKEFILLYGKD 272 Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLA 228 +T Y+ +F Q N + E GD+ ++ Y G G + +A Sbjct: 273 FITDLMLDKTYQISAPAFYQVNTPQAEKLYETAYEFAGLKPGDVVIDAYSGIGTIGISMA 332 Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288 +V +E+ +VE A+ N N + N ++++ E Sbjct: 333 DRVAKVYGMEVVPAAVENAKRNAQLNELENTHYEVGTAEKIMPKWLSE------------ 380 Query: 289 SYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILST-THTIERLA 345 + IFVDPPR GLD+ + I+YISCNP + RD+ + ++++ Sbjct: 381 GIKPDVIFVDPPRKGLDEGFIKAAAMMNPRRIVYISCNPATFARDVVRFEADGYLLDKVQ 440 Query: 346 LFDQFPYTRHMECGVLLVRK 365 D FP T H+E +K Sbjct: 441 PVDLFPQTHHIELVASFNKK 460 >gi|326406728|gb|ADZ63799.1| 23S rRNA uracil-5-methyltransferase [Lactococcus lactis subsp. lactis CV56] Length = 460 Score = 258 bits (658), Expect = 1e-66, Method: Composition-based stats. Identities = 74/380 (19%), Positives = 142/380 (37%), Gaps = 33/380 (8%) Query: 7 IDQYEQQLAEK----VDRLRQMMLAFQVPNLQIFRS-EPIHYRMRAEFHIWHDGDDLYHI 61 Y++Q+ K VD LR+ P L + + + I+YR +A+ + L Sbjct: 93 HLSYDEQVKFKHKQVVDILRKTAGKSDYPVLPVVEAIKTINYRNKAQIPVQMVDGLLTTG 152 Query: 62 MFDQQTKERMRIDYFMPGSLLINALMIEMMATI-------RLEPLLRAKLFQIDYLTS-Q 113 + + + + ++ F I+A+++ + E + L I + Sbjct: 153 FYRKNSHTLIPVEDFYIQHPEIDAVVLFLRDEFRKINLQAYDEKTRKGWLRNIVVRRAFH 212 Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYV----DE 169 + + ++TL+ E I +QL + L ++++ + Sbjct: 213 TGEMMITLVVTSKKLPEKVELVIDHLVERFTNIKSVQLNINSGTGSFILGKEFILLYGKD 272 Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLA 228 +T Y+ +F Q N + E GD+ ++ Y G G + +A Sbjct: 273 FITDLMLDKTYQISAPAFYQVNTPQAEKLYETAYEFAGLKPGDVVIDAYSGIGTIGISMA 332 Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288 +V +E+ +VE A+ N N + N ++++ E Sbjct: 333 DRVAKVYGMEVVPAAVENAKRNAQLNELENTHYEVGTAEKIMPKWLSE------------ 380 Query: 289 SYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILS-TTHTIERLA 345 + IFVDPPR GLD+ + I+YISCNP + RD+ + ++++ Sbjct: 381 GIKPDVIFVDPPRKGLDEGFIKAAAMMNPRRIVYISCNPATFARDVVRFEAEGYLLDKVQ 440 Query: 346 LFDQFPYTRHMECGVLLVRK 365 D FP T H+E +K Sbjct: 441 PVDLFPQTHHIELVASFNKK 460 >gi|325690909|gb|EGD32909.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis SK115] Length = 456 Score = 258 bits (658), Expect = 1e-66, Method: Composition-based stats. Identities = 81/392 (20%), Positives = 150/392 (38%), Gaps = 46/392 (11%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54 ++ Y++QL K D LRQ + F + I EP++YR + +F Sbjct: 81 GCQIMHLHYDKQLEFKEDLLRQALKKFAPAGYENYEIRPTIGMQEPLYYRAKLQFQTRKF 140 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGSLL---INALMIEMMATIRLEPLLRAKLFQIDYL- 110 D++ ++ Q + + + + + I + ++ RL K + + Sbjct: 141 KDEVKAGLYAQNSHYLVSLKNCLVQDKVTQKIINKVARLLGKYRLPIYDERKTAGVRTVM 200 Query: 111 ---TSQSDQAIVTLIYHRLLD---------DAWRECAIRLRDALHARKYQIQLIGRANKT 158 ++ Q + + R LD + E + ++ +I +KT Sbjct: 201 IRRARKTGQVQMIFVTGRKLDFSPVVRDLVAEFPELETVAVNYHTSKSSEI----YGDKT 256 Query: 159 KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELY 217 +I + + E + + +F Q N + E V A + L++ Y Sbjct: 257 EIIWGEEAIQEGVL----DYEFSLSPRAFYQLNPEQTEVLYGEAVKALDVTKEDHLIDAY 312 Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277 CG G A+ + ++I ++E A+ N +N +++E E Sbjct: 313 CGVGTIGFAFAKRVKSLRGMDIIPEAIEDAKRNAKRMGFDNTLYEAGTAEEIIPRWYAE- 371 Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL 335 YR + VDPPR+GLDD +G + A ++Y+SCN +L RDL L Sbjct: 372 -----------GYRADALIVDPPRTGLDDKLLGTIVRYAPEKMVYVSCNVSTLARDLVKL 420 Query: 336 STTHTIERLALFDQFPYTRHMECGVLLVRKPS 367 S + + + D FP+T E V L ++ S Sbjct: 421 SQVYDVHYIQSVDMFPHTARTEAVVKLSKRDS 452 >gi|319939659|ref|ZP_08014018.1| TrmA family TRNA methyltransferase [Streptococcus anginosus 1_2_62CV] gi|319811248|gb|EFW07554.1| TrmA family TRNA methyltransferase [Streptococcus anginosus 1_2_62CV] Length = 452 Score = 258 bits (658), Expect = 1e-66, Method: Composition-based stats. Identities = 84/390 (21%), Positives = 148/390 (37%), Gaps = 46/390 (11%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54 ++ Y++QL K D LRQ + F + I EP +YR + +F Sbjct: 81 GCQIMHLHYDKQLEFKTDLLRQALKKFAPQGYENYEIRPTIGMQEPQYYRAKLQFQTRKF 140 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGSL----LINALMIEM------MATIRLEPLLRAKL 104 D+ ++ Q + + + + +IN + + + + R +R + Sbjct: 141 KGDVKAGLYAQNSHYLISLKNCLVQDKVTQKIINKVALLLGKYNLPIYDERKNAGIRTVM 200 Query: 105 FQIDYLTSQSDQAIVTLIYH------RLLDDAWRECAIRLRDALHARKYQIQLIGRANKT 158 + T Q VT R L + E + + +I ++T Sbjct: 201 IRRARKTGQVQMIFVTGKKLDFSPIIRDLSAEFPELETVAVNYHTTKSSEI----YGDRT 256 Query: 159 KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELY 217 +I ++ + E + + +F Q N + E V A + L++ Y Sbjct: 257 EIIWGKETIQEGVL----DYEFSLSPRAFYQLNPEQTEVLYSEAVKALDVTSEEHLIDAY 312 Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277 CG G A+ + ++I ++E A+ N A NN +++ +E Sbjct: 313 CGVGTIGFAFAKRVKSLRGMDIIPEAIEDAKRNAARLGFNNTHYETGTAESIIPRWYKE- 371 Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL 335 YR + VDPPR+GLDD + + A ++Y+SCN SL RDL L Sbjct: 372 -----------GYRADALIVDPPRTGLDDKLLETIVRYAPKKMVYVSCNVSSLARDLVQL 420 Query: 336 STTHTIERLALFDQFPYTRHMECGVLLVRK 365 S + + + D FP+T E V L+RK Sbjct: 421 SKVYDVHYIQSVDMFPHTARTEAVVKLIRK 450 >gi|289167359|ref|YP_003445628.1| tRNA methyltransferase, TrmA family [Streptococcus mitis B6] gi|288906926|emb|CBJ21760.1| tRNA methyltransferase, TrmA family [Streptococcus mitis B6] Length = 440 Score = 258 bits (658), Expect = 2e-66, Method: Composition-based stats. Identities = 81/391 (20%), Positives = 147/391 (37%), Gaps = 40/391 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54 ++ Y++QL K D L Q + F + I EP +YR + +F Sbjct: 66 GCQIMHLHYDKQLEFKTDLLHQALKKFAPAGYENYEIRPTIGMQEPKYYRAKLQFQTRKF 125 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----------LRAKL 104 + + ++ Q + + + + + + + + +R + Sbjct: 126 KNQVKAGLYAQNSHYLVELKDCLVQDKETQVIANRLAELLTYHQIPITDERKVLGVRTIM 185 Query: 105 FQIDYLTSQSDQAIVT---LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161 + T Q IVT L +L+ D ++ + A++ + I KT+I Sbjct: 186 VRRARKTGQVQIIIVTNRQLNLTQLVKDLVKDFPEVVTVAVNTNTAKTSEI-YGEKTEII 244 Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGN 220 + + E + + +F Q N + E V A + L++ YCG Sbjct: 245 WGEESIQEGVL----DYEFSLSPRAFYQLNPEQTEVLYNEAVKALDVNKEDHLIDAYCGV 300 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G A+ + ++I ++E A+ N +N +++E +E Sbjct: 301 GTIGFAFAKKVKTLRGMDIIPEAIEDAKRNAKRMGFDNTHYEVGTAEEIIPRWYKE---- 356 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTT 338 YR + VDPPR+GLDD + + Y ++YISCN +L RDL L Sbjct: 357 --------GYRADALIVDPPRTGLDDKLLDTILTYVPEKMVYISCNVSTLARDLVRLVEV 408 Query: 339 HTIERLALFDQFPYTRHMECGVLLVRKPSGW 369 + I + D FP+T E V L++K S Sbjct: 409 YDIHYIQSVDMFPHTARTEAVVKLIKKVSKK 439 >gi|170761366|ref|YP_001788185.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum A3 str. Loch Maree] gi|169408355|gb|ACA56766.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum A3 str. Loch Maree] Length = 450 Score = 258 bits (658), Expect = 2e-66, Method: Composition-based stats. Identities = 83/392 (21%), Positives = 147/392 (37%), Gaps = 49/392 (12%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMML-----AFQVPNLQIFRSEPIHYRMRAEFHIW--HD 54 + YE+QL K ++L ++ F ++ E YR + EF Sbjct: 79 GCSTQYIPYEKQLQIKEEQLLKLFKSKEIKGFDFLEVEK-SPEEYEYRNKMEFTFGDMEK 137 Query: 55 GDDLYHIMFDQQTK-ERMRIDYFMPGSLLI-----------NALMIEMMATIRLEPLLRA 102 G DL M + + +D N + + E LR Sbjct: 138 GGDLTLGMHVKNRNFSIVTVDKCEIVDRDFRNILTTVVNYFNEKRLPKYRVMSHEGFLRN 197 Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDA------WRECAIRLRDALHARKYQIQLIGRAN 156 + + T + IVT EC ++ LH + + + + Sbjct: 198 LVIRKAKNTGEILINIVTTSQMEFDFKEIVDMLLKVECKGEIKGILHTINDTLSDVVQVD 257 Query: 157 KTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-E 215 K +I RDY+ E L L ++ +F Q N+ + V ++ + Sbjct: 258 KLEILYGRDYIIEELL----GLKFKIAPEAFFQTNSKGAEKLYSIVKDFLGDASSKVVFD 313 Query: 216 LYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275 LYCG G ++A +V+ VE+ + +V+AA N N +NN + + + + +++ Sbjct: 314 LYCGTGTIGQIVAPKAKKVIGVELIEEAVKAANENAKLNGLNNCEFIAGDVAKVIKDVKQ 373 Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLS 333 + I +DPPR G+ + V + I+Y+SCNP +L DL Sbjct: 374 ---------------KPDIIILDPPRPGVHPVALEYVVKFQPKEIIYVSCNPKTLVDDLK 418 Query: 334 IL-STTHTIERLALFDQFPYTRHMECGVLLVR 364 L + +E++ D FP+T H+E V L + Sbjct: 419 YLIDNGYKLEKVKGMDMFPHTPHVETVVRLSK 450 >gi|237742795|ref|ZP_04573276.1| tRNA (Uracil-5-)-methyltransferase [Fusobacterium sp. 4_1_13] gi|229430443|gb|EEO40655.1| tRNA (Uracil-5-)-methyltransferase [Fusobacterium sp. 4_1_13] Length = 453 Score = 257 bits (657), Expect = 2e-66, Method: Composition-based stats. Identities = 75/384 (19%), Positives = 161/384 (41%), Gaps = 34/384 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAF-QVPNLQIF----RSEPIHYRMRAEFHIWHDGD 56 + +YE QL K + ++M + ++Q+ + +YR + + Sbjct: 80 GCDFAMLKYESQLKYKRLMVEEVMKKIAGLSDIQVNDVLASEDIYNYRNKIIEPFSVYVN 139 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-------LRAKLFQIDY 109 + F +++ E +D + S L N ++ E+ + + + L I Sbjct: 140 KIITGFFKRKSHEVFEVDENILNSKLGNRIIKELKEILNKNKISVYDENAHKGILRNIMI 199 Query: 110 LTSQSDQAIVTLIYHR-LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR---- 164 T+ +++A+V LI + + + ++ +LR+ + K I + + KT + Sbjct: 200 RTNSNNEAMVVLIINSNKITENIKKLLFKLRENIEEIK-SIYISLNSKKTNTVIGEKNIL 258 Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNF 223 Y ++ + + + SF Q N + + ++ I +++ Y G G Sbjct: 259 IYGEKSIKENINGIEFHISPTSFFQINVKQAKRLYDIAISFFDDIDDKYIVDAYSGTGTI 318 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 +++A+ +V A+EI K + E N + N++ + + ++ L Sbjct: 319 GMIMAKKAKKVYAIEIVKSASEDGEKTAKENGIKNIEFINGAVEK------------ELV 366 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILST-THT 340 ++ ++ + TI DPPR GL+ + + V ++YISCNP + RD+ + S + Sbjct: 367 NLINNNQKIDTIIFDPPRKGLEASIIVTVAKLNLKEVVYISCNPSTFARDVKLFSEKGYV 426 Query: 341 IERLALFDQFPYTRHMECGVLLVR 364 +++L D FP T H+E L+ R Sbjct: 427 LKKLQAVDMFPQTSHVETIALIQR 450 >gi|293364145|ref|ZP_06610872.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus oralis ATCC 35037] gi|291317323|gb|EFE57749.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus oralis ATCC 35037] Length = 454 Score = 257 bits (657), Expect = 2e-66, Method: Composition-based stats. Identities = 79/387 (20%), Positives = 147/387 (37%), Gaps = 40/387 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54 ++ Y++QL K D L Q + F + I EP +YR + +F Sbjct: 81 GCQIMHLHYDKQLEFKTDLLHQALKKFAPAGYENYEIRPTIGMQEPKYYRAKLQFQTRKF 140 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----------LRAKL 104 + + ++ Q + + + + + + + + +R + Sbjct: 141 KNQVKAGLYAQNSHYLVELKDCLVQDKETQVIANCLAELLTYHQIPITDERKTLGVRTIM 200 Query: 105 FQIDYLTSQSDQAIVT---LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161 + T Q IVT L +L+ D ++ + A++ + I KT+I Sbjct: 201 VRRARKTGQVQIIIVTNRQLNLTQLVKDLVKDFPEVVTVAVNTNTAKTSEI-YGEKTEII 259 Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGN 220 ++ + E + + +F Q N + E V A + L++ YCG Sbjct: 260 WGQESIQEGVL----DYEFSLSPRAFYQLNPEQTEILYSEAVKALDVSKEDHLIDAYCGV 315 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G A + ++I ++E A+ N +N +++E ++ Sbjct: 316 GTIGFAFANKVKSLRGMDIIPEAIEDAKRNAQRMGFDNTHYEAGTAEEIIPRWYKD---- 371 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTT 338 YR + VDPPR+GLDD + + Y ++Y+SCN +L RDL L Sbjct: 372 --------GYRADALIVDPPRTGLDDKLLDTILTYVPEKMVYVSCNVSTLARDLVRLVKV 423 Query: 339 HTIERLALFDQFPYTRHMECGVLLVRK 365 + ++ + D FP+T E V LVRK Sbjct: 424 YDLQYIQSVDMFPHTARTEAVVKLVRK 450 >gi|307704007|ref|ZP_07640940.1| RNA methyltransferase, TrmA family [Streptococcus mitis SK597] gi|307622431|gb|EFO01435.1| RNA methyltransferase, TrmA family [Streptococcus mitis SK597] Length = 451 Score = 257 bits (656), Expect = 2e-66, Method: Composition-based stats. Identities = 78/387 (20%), Positives = 148/387 (38%), Gaps = 40/387 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54 ++ Y++QL K D L Q + F + I EP +YR + +F Sbjct: 81 GCQIMHLHYDKQLEFKTDLLYQALKKFAPAGYENYEIRPTIGMQEPKYYRAKLQFQTRKF 140 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----------LRAKL 104 + + ++ Q + + + + + + + + +R + Sbjct: 141 KNQVKAGLYAQNSHYLVELKDCLVQDRETQVIANRLAELLTYHQIPITDERKVLGVRTIM 200 Query: 105 FQIDYLTSQSDQAIVT---LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161 + T Q IVT L +L+ + ++ + A++ + I KT+I Sbjct: 201 VRRARKTGQVQIIIVTNRQLNLTQLVKELVKDFPEIVTVAVNTNTAKTSEI-YGEKTEII 259 Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGN 220 ++ + E + + +F Q N + E V A + L++ YCG Sbjct: 260 WGQESIQEGVL----DYEFSLSPRAFYQLNPEQTEVLYNEAVKALDVNKEDHLIDAYCGV 315 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G A+ + ++I ++E A+ N +N+ +++E +E Sbjct: 316 GTIGFAFAKKVKTLRGMDIIPEAIEDAKRNAKRMGFDNIHYEAGTAEEIIPRWYKE---- 371 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTT 338 YR + VDPPR+GLDD + + Y ++YISCN +L RDL L Sbjct: 372 --------GYRADALIVDPPRTGLDDKLLDTILTYVPEKMVYISCNVSTLARDLVRLVKV 423 Query: 339 HTIERLALFDQFPYTRHMECGVLLVRK 365 + + + D FP+T E V L++K Sbjct: 424 YDLHYIQSVDMFPHTARTEAVVKLIKK 450 >gi|218283642|ref|ZP_03489604.1| hypothetical protein EUBIFOR_02197 [Eubacterium biforme DSM 3989] gi|218215702|gb|EEC89240.1| hypothetical protein EUBIFOR_02197 [Eubacterium biforme DSM 3989] Length = 431 Score = 257 bits (656), Expect = 2e-66, Method: Composition-based stats. Identities = 73/370 (19%), Positives = 138/370 (37%), Gaps = 26/370 (7%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHI 61 L Y QL K ++++ +V + P +YR +A+F + + Sbjct: 79 GCQLQHMSYAYQLDYKYKHVKKLFEGIEVK-PILGMDNPWYYRNKAQFPVKIKDGKVQMG 137 Query: 62 MFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTL 121 + Q + + + +IN + + I L+ + I + ++ Q + Sbjct: 138 FYRQHSNDVVTCKECKIQDHVINEVFSFIQKKITLKMAQDLRHVFIRHSSTDEIQVVFIG 197 Query: 122 IYHRL---LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTL 178 + L D + + + + + + K+ DY+ E L Sbjct: 198 KNEKNIISLSDQLKNTFANITSIVFNYNTRNDNVILGDTYKVLYGNDYIIEECLGNKVKL 257 Query: 179 IYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELYCGNGNFSLVLARHFDRVLAV 237 ++ +F Q N + + AA +++Y G G + +++H V+ V Sbjct: 258 HFK----AFFQVNPKQMEVLYSQAIKAANLTGNETCIDMYAGTGTIGMAVSQHAKSVIGV 313 Query: 238 EIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFV 297 EI K +V+ A N NH+++ V + +F D + IF+ Sbjct: 314 EIVKEAVDNANDNTKMNHLDHCHYVCQDATDFAH--------------DHKEDKIDVIFI 359 Query: 298 DPPRSGLDD-ATVGMVQAYP-HILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTR 354 DPPR G+ + + P I+Y+SCNP +L RDL I + E + D F T Sbjct: 360 DPPRKGMTENGIKDTITMQPDKIVYVSCNPKTLSRDLKIFKEYGYQCEYVQPVDMFCQTI 419 Query: 355 HMECGVLLVR 364 +EC L + Sbjct: 420 GLECVAKLTK 429 >gi|259501117|ref|ZP_05744019.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners DSM 13335] gi|302190435|ref|ZP_07266689.1| RNA methyltransferase [Lactobacillus iners AB-1] gi|309806175|ref|ZP_07700192.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners LactinV 03V1-b] gi|259167811|gb|EEW52306.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners DSM 13335] gi|308167456|gb|EFO69618.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners LactinV 03V1-b] Length = 450 Score = 257 bits (656), Expect = 2e-66, Method: Composition-based stats. Identities = 84/387 (21%), Positives = 152/387 (39%), Gaps = 39/387 (10%) Query: 3 GTLLIDQYEQQLAEKVDRLRQMMLAF---QVPNLQIFRSEPIHYRMRAEFHIWHDGDDLY 59 L +YE+QL K ++ ++ + N + E YR +A+ + L Sbjct: 80 AALAHMKYERQLEFKKKQVVNLLEKVHLNKKVNDCLASPESTAYRNKAQVPVRMVNGQLE 139 Query: 60 HIMFDQQTKERMRIDYFMPGSLLINALMIEMMA-----------TIRLEPLLRAKLFQID 108 F + + + + + F+ I+A ++ + I+ +R + Sbjct: 140 VGFFRKHSHDLVPMTDFLTTDKKIDAAVVAVRDILRKFNVPAYDEIKHNGEVRYLEIRRS 199 Query: 109 YLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD-RDYV 167 Q +V L DA + L + + L +KT + L ++Y+ Sbjct: 200 KANGQLMIVLVCLHKSFNNLDAVVQAIKSLDNVAC-----VILNHNPHKTNVILGEKEYI 254 Query: 168 ---DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNF 223 + + L ++ SF Q N+ + + + D+ ++ Y G G Sbjct: 255 LAGNGEIVDKIGDLSFKISSQSFFQINSLQTPRLYNLAIQKAQLTADDVVIDAYSGIGTI 314 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 L +A+H +VL VEI + +V+ A+ N N +NN + ++E E Sbjct: 315 GLSVAKHVKKVLGVEIVRDAVKDAKKNAILNGINNAEYFEGKAEELMPQWANE------- 367 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGM--VQAYPHILYISCNPDSLCRDLSIL-STTHT 340 + IFVDPPR GL D + + I+YISCNP ++ RDL + + + Sbjct: 368 -----GLKTDVIFVDPPRKGLTDTFIKAAVATSPKKIVYISCNPATMIRDLQVFQAAGYD 422 Query: 341 IERLALFDQFPYTRHMECGVLLVRKPS 367 + + D FP T H+E VLL + S Sbjct: 423 FDCIDPVDMFPQTPHVETIVLLSKLGS 449 >gi|307709324|ref|ZP_07645782.1| RNA methyltransferase [Streptococcus mitis SK564] gi|307619907|gb|EFN99025.1| RNA methyltransferase [Streptococcus mitis SK564] Length = 456 Score = 257 bits (656), Expect = 2e-66, Method: Composition-based stats. Identities = 69/379 (18%), Positives = 147/379 (38%), Gaps = 40/379 (10%) Query: 10 YEQQLAEKVDRLRQMMLAFQV-----PNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 Y +QL K +++ + + P+ YR +A+ + L F Sbjct: 88 YPEQLKFKTKQVKDSLYKIAGIADVGVAETLGMENPVKYRNKAQVPVRRVNGVLETGFFR 147 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIR-----------LEPLLRAKLFQIDYLTSQ 113 + + + M ++ F +I+ +++ + +R L+R + + + + Q Sbjct: 148 KNSHDLMPLEDFFIQDPVIDEVVVGLRDLLRRYDLKPYDEKEQSGLIRNLVVRRGHYSGQ 207 Query: 114 SDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDE 169 +VT + L + + + + Q + +D++ + Sbjct: 208 IMVILVTTRPKVFRVDQLIEQLIKQFPEIVSVMQNINDQNTNAIFGKEWSTLYGQDFITD 267 Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLA 228 ++ Y+ +F Q N + + + + + + D+ ++ Y G G L +A Sbjct: 268 QMLGND----YQIAGPAFYQVNTEMAEKLYQTAIDFAELKEDDVVIDAYSGIGTIGLSVA 323 Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288 +H V VE+ +VE ++ N NH++N V +++ + +E Sbjct: 324 KHVKEVYGVEVIPEAVENSKKNAQLNHISNAHYVCDTAENAMKNWLKE------------ 371 Query: 289 SYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST-THTIERLA 345 + I VDPPR GL ++ + I YISCN ++ RD+ + + ++++ Sbjct: 372 GIQPSLILVDPPRKGLIESFIKASTQTGADRIAYISCNVATMARDIKLYQELGYELKKVQ 431 Query: 346 LFDQFPYTRHMECGVLLVR 364 D FP T H+E LL R Sbjct: 432 PVDLFPQTHHVEAVSLLFR 450 >gi|300854061|ref|YP_003779045.1| tRNA (uracil-5-) -methyltransferase, SAM-dependent [Clostridium ljungdahlii DSM 13528] gi|300434176|gb|ADK13943.1| tRNA (uracil-5-) -methyltransferase, SAM-dependent [Clostridium ljungdahlii DSM 13528] Length = 450 Score = 257 bits (656), Expect = 2e-66, Method: Composition-based stats. Identities = 83/391 (21%), Positives = 152/391 (38%), Gaps = 47/391 (12%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIF----RSEPIHYRMRAEFHIW---HD 54 T Y++QL K ++ + + + + E YR + EF Sbjct: 79 GCTSQFIPYDKQLELKEKQVLDLFEKASICDFEFLGIEKSPEKTGYRNKMEFSFGDEQRG 138 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGS---LLINALMIEMMATIRL--------EPLLRAK 103 G + ++ + +D LI ++ L E LR Sbjct: 139 GQLTLGMHIKGRSFGVVNVDNCNLVDADFTLILDKVVTYFREKNLPYYKIKNHEGYLRNL 198 Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAI------RLRDALHARKYQIQLIGRANK 157 + + T + IVT + D + + L LH + + +A+ Sbjct: 199 VLRKGRNTGEILINIVTTSQIQFDLDGFNKLLQVLNYKGTLVGILHTVNDNLSDMVKADN 258 Query: 158 TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLEL 216 +I RDY+ E + L ++ SF Q N+ + + + +L Sbjct: 259 VEILYGRDYIMEEIL----GLKFKISPESFFQTNSRGTEKLYAMIKDFLGDASSKTVFDL 314 Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276 YCG G VL+ ++V+ VE+ + +V +A N N++ N + + K+ Sbjct: 315 YCGTGTIGQVLSSSVNKVIGVELIEKAVASANENAKLNNIKNCRFIAGDVKDV------- 367 Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSI 334 N L+D + I +DPPR G+ + V + P I+Y+SCNP +L +DL++ Sbjct: 368 --LNTLED------KPDIIILDPPRPGVHPKALKYVIDFNAPEIIYVSCNPKTLVQDLNV 419 Query: 335 L-STTHTIERLALFDQFPYTRHMECGVLLVR 364 L + ++++ L D FP+T H+E V L + Sbjct: 420 LIDAGYNVDKVKLMDMFPHTPHVETVVKLSK 450 >gi|227891765|ref|ZP_04009570.1| tRNA (uracil-5-) -methyltransferase [Lactobacillus salivarius ATCC 11741] gi|227866424|gb|EEJ73845.1| tRNA (uracil-5-) -methyltransferase [Lactobacillus salivarius ATCC 11741] Length = 459 Score = 257 bits (656), Expect = 2e-66, Method: Composition-based stats. Identities = 76/381 (19%), Positives = 152/381 (39%), Gaps = 40/381 (10%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWH-DGDDLYHI 61 Y +QL K D +RQ + F+ N + + P YR +A+F + G+ + Sbjct: 94 YSKQLEFKTDVIRQSLEKFKPTNYENMELRPTLGMEVPYEYRNKAQFQVRKVKGNKVIAG 153 Query: 62 MFDQQTKERMRIDYF---MPGSLLINALMIEMMATIRLE--------PLLRAKLFQIDYL 110 ++ + + + F MP ++ I +++++ + +L+ + + Sbjct: 154 LYKPNSHILVDLPTFKTQMPLTMEIMRKIVKLLEKWNISIYDERRNSGILKTVVIRQ--- 210 Query: 111 TSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY---V 167 T +++Q V + R + + A +Q I + + + + + Sbjct: 211 TLKTEQVQVVFVTARNNCANLNQVVNEIMSAYPQIVSVMQNINPSRSSLVWGEETFKLAG 270 Query: 168 DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLV 226 +RL + + SF Q N + V A + + L++ YCG G L Sbjct: 271 TDRLLEQLGDIKFELSARSFFQLNPSQTEVLYTEVKKALDLKEDETLVDAYCGVGTIGLF 330 Query: 227 LARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDID 286 ++ V ++I ++E A+ N + N+ +++ + Sbjct: 331 VSPDAKEVRGMDIIPEAIEDAKKNAELSGRKNIHYEVGKAEDLFAKWTK----------- 379 Query: 287 IHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILSTTHTIERL 344 +++ + VDPPR+GLDD + + Y +Y+SCNP +L RDL L + +E + Sbjct: 380 -NNFVPDALVVDPPRTGLDDKMIETILKYRPNKFVYVSCNPSTLARDLVKLVKIYNVEYI 438 Query: 345 ALFDQFPYTRHMECGVLLVRK 365 D FP T +E V L +K Sbjct: 439 QSVDMFPQTARVEAVVKLSKK 459 >gi|301301048|ref|ZP_07207208.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus salivarius ACS-116-V-Col5a] gi|300851318|gb|EFK79042.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus salivarius ACS-116-V-Col5a] Length = 459 Score = 257 bits (656), Expect = 2e-66, Method: Composition-based stats. Identities = 76/381 (19%), Positives = 152/381 (39%), Gaps = 40/381 (10%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWH-DGDDLYHI 61 Y +QL K D +RQ + F+ N + + P YR +A+F + G+ + Sbjct: 94 YSKQLEFKTDVIRQSLEKFKPTNYENMELRPTLGMEVPYEYRNKAQFQVRKVKGNKVIAG 153 Query: 62 MFDQQTKERMRIDYF---MPGSLLINALMIEMMATIRLE--------PLLRAKLFQIDYL 110 ++ + + + F MP ++ I +++++ + +L+ + + Sbjct: 154 LYKPNSHILVDLPTFKTQMPLTMEIMRKIVKLLEKWNISIYDERRNSGILKTVVIRQ--- 210 Query: 111 TSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY---V 167 T +++Q V + R + + A +Q I + + + + + Sbjct: 211 TLKTEQVQVVFVTARNNCANLNQVVNEIMSAYPQIVSVMQNINPSRSSLVWGEETFKLAG 270 Query: 168 DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLV 226 +RL + + SF Q N + V A + + L++ YCG G L Sbjct: 271 TDRLLEQLGDIKFELSARSFFQLNPSQTEVLYTEVKKALDLKEDETLVDAYCGVGTIGLF 330 Query: 227 LARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDID 286 ++ V ++I ++E A+ N + N+ +++ + Sbjct: 331 VSPDAKEVRGMDIIPEAIEDAKKNAELSGRKNIHYEVGKAEDLFAKWTK----------- 379 Query: 287 IHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILSTTHTIERL 344 +++ + VDPPR+GLDD + + Y +Y+SCNP +L RDL L + +E + Sbjct: 380 -NNFVPDALVVDPPRTGLDDKMIETILKYRPNKFVYVSCNPSTLARDLVKLVKIYNVEYI 438 Query: 345 ALFDQFPYTRHMECGVLLVRK 365 D FP T +E V L +K Sbjct: 439 QSVDMFPQTARVEAVVKLSKK 459 >gi|327474491|gb|EGF19896.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis SK408] Length = 456 Score = 257 bits (656), Expect = 3e-66, Method: Composition-based stats. Identities = 79/392 (20%), Positives = 147/392 (37%), Gaps = 46/392 (11%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54 ++ Y++QL K D LRQ + F + I EP++YR + +F Sbjct: 81 GCQIMHLHYDKQLEFKEDLLRQALKKFAPAGYENYEIRPTIGMQEPLYYRAKLQFQTRKY 140 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----------LRAKL 104 D++ ++ Q + + + + + ++ ++ + L +R + Sbjct: 141 KDEVKAGLYAQNSHYLVSLKNCLVQDKVTQQIINKVARLLGKYKLPIYDERKTAGVRTVM 200 Query: 105 FQIDYLTSQSDQAIVTLIY------HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKT 158 + T Q VT R L + E + ++ +I +KT Sbjct: 201 IRRSRKTGQVQMIFVTGRKLDFSPVVRDLVAEFPELETVAVNYHTSKSSEI----YGDKT 256 Query: 159 KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELY 217 +I + + E + + +F Q N + E V A + L++ Y Sbjct: 257 EIIWGEEAIQEGVL----DYEFSLSPRAFYQLNPEQTEVLYGEAVKALDVTAEDHLIDAY 312 Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277 CG G A+ + ++I ++E A+ N +N +++E E Sbjct: 313 CGVGTIGFAFAKKVKSLRGMDIIPEAIEDAKRNAKRMGFDNTLYEAGTAEEIIPRWYAE- 371 Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL 335 YR + VDPPR+GLDD + + A ++Y+SCN +L RDL L Sbjct: 372 -----------GYRANALIVDPPRTGLDDKLLETIVHYAPEKMVYVSCNVSTLARDLVKL 420 Query: 336 STTHTIERLALFDQFPYTRHMECGVLLVRKPS 367 + + + D FP+T E V L ++ S Sbjct: 421 CQVYDVHYIQSVDMFPHTARTEAVVKLSKRDS 452 >gi|315221991|ref|ZP_07863902.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus anginosus F0211] gi|315188957|gb|EFU22661.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus anginosus F0211] Length = 452 Score = 257 bits (656), Expect = 3e-66, Method: Composition-based stats. Identities = 81/390 (20%), Positives = 146/390 (37%), Gaps = 46/390 (11%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN-------LQIFRSEPIHYRMRAEFHIWHD 54 ++ Y++QL K D LRQ + F I EP +YR + +F Sbjct: 81 GCQIMHLHYDKQLEFKADLLRQALKKFAPQGYKNYEIRPTIGMQEPQYYRAKLQFQTRKF 140 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGSL----LINALMIEM------MATIRLEPLLRAKL 104 D+ ++ Q + + + + +IN + + + + R +R + Sbjct: 141 KGDVKAGLYAQNSHYLISLKNCLVQDKVTQKIINKVALLLGKYNFPIYDERKNAGVRTVM 200 Query: 105 FQIDYLTSQSDQAIVTLIYH------RLLDDAWRECAIRLRDALHARKYQIQLIGRANKT 158 + T Q VT R L + E + + +I +KT Sbjct: 201 IRRARKTGQVQMIFVTGKKLDFSPVIRDLTAEFPELETVAVNYHTTKSSEI----YGDKT 256 Query: 159 KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELY 217 +I ++ + E + + +F Q N + E V A + L++ Y Sbjct: 257 EIIWGKETIQEGVL----DYEFSLSPRAFYQLNPEQTEVLYNEAVKALDVDSEDCLIDAY 312 Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277 CG G A+ + ++I ++E A+ N +N +++ +E Sbjct: 313 CGVGTIGFAFAKKVKSLRGMDIIPEAIEDAKRNAKKMGFDNAYYEAGTAESIIPRWYKE- 371 Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL 335 YR + VDPPR+GLD+ + + A ++Y+SCN +L RDL L Sbjct: 372 -----------GYRADALIVDPPRTGLDEKLLETIVRYAPKKMVYVSCNVSTLARDLVQL 420 Query: 336 STTHTIERLALFDQFPYTRHMECGVLLVRK 365 S + + + D FP+T E V LV+K Sbjct: 421 SKVYDVHYIQSVDMFPHTARTEAVVKLVKK 450 >gi|325696391|gb|EGD38282.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis SK160] Length = 456 Score = 256 bits (655), Expect = 3e-66, Method: Composition-based stats. Identities = 80/392 (20%), Positives = 148/392 (37%), Gaps = 46/392 (11%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54 ++ Y++QL K D LRQ + F + I EP++YR + +F Sbjct: 81 GCQIMHLHYDKQLEFKEDLLRQALKKFAPAGYENYEIRPTIGMQEPLYYRAKLQFQTRKY 140 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATI----------RLEPLLRAKL 104 D++ ++ Q + + + + + ++ ++ + R +R + Sbjct: 141 KDEVKAGLYAQNSHYLVSLKNCLVQDKVTQKIINKVARLLGKYRLPIYDERKNAGVRTVM 200 Query: 105 FQIDYLTSQSDQAIVT------LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKT 158 + T Q VT + R L + E + ++ +I +KT Sbjct: 201 IRRARKTGQVQMIFVTGRKLDFSLVVRDLVAEFPELETVAVNYHTSKSSEI----YGDKT 256 Query: 159 KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELY 217 +I + E + + +F Q N + E + A + D L++ Y Sbjct: 257 EIIWGEKAIQEGVL----DYEFSLSPRAFYQLNPEQTEVLYEEAVKALDVTKEDHLIDAY 312 Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277 CG G A+ + ++I ++E A+ N +N +++E E Sbjct: 313 CGVGTIGFAFAKRVKSLRGMDIIPEAIEDAKRNAKKMGFDNTLYEAGTAEEIIPRWYAE- 371 Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL 335 YR + VDPPR+GLDD + + A ++Y+SCN +L RDL L Sbjct: 372 -----------GYRADALIVDPPRTGLDDKLLETIVRYAPEKMVYVSCNVSTLARDLVKL 420 Query: 336 STTHTIERLALFDQFPYTRHMECGVLLVRKPS 367 + + + D FP+T E V L +K S Sbjct: 421 CQVYDVHYIQSVDMFPHTARTEAVVKLSKKDS 452 >gi|312868954|ref|ZP_07729134.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus oris PB013-T2-3] gi|311095518|gb|EFQ53782.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus oris PB013-T2-3] Length = 497 Score = 256 bits (655), Expect = 3e-66, Method: Composition-based stats. Identities = 76/381 (19%), Positives = 134/381 (35%), Gaps = 41/381 (10%) Query: 10 YEQQLAEKVDRLRQMMLAFQV-------PNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIM 62 Y QQLA K + + FQ I E HYR +A+F + + + Sbjct: 132 YPQQLAFKRQVVLDSLAKFQPYGYRNYDVRRTIVAPEEYHYRNKAQFQVRMVDGHVAAGL 191 Query: 63 FDQQTKERMRIDYFMPG-----------SLLINALMIEMMATIRLEPLLRAKLFQIDYLT 111 + + + + + LI L I + +++ + + + T Sbjct: 192 YKPNSHDLVDMQECAVQMPRTMKVVRTVVQLIEDLQIPVYEEDHNSGIIKTIVVRESWTT 251 Query: 112 SQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYV 167 + ++T LI+ R L +A + + + + + ++ + Sbjct: 252 GKLQLTLITNTPKLIHKRPLLEAIAQQLPEVVSVMQNVNPGDTPLVWGEQMIHLAGKETI 311 Query: 168 DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLV 226 E L L + SF Q N + E V A + L++ Y G G L Sbjct: 312 TESLM----GLDFELSARSFLQLNPEQTEALYEQVAEALELAPEDTLIDAYAGIGTIGLS 367 Query: 227 LARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDID 286 LA V +E+ +V A N N + N + ++E E Sbjct: 368 LASRVKAVRGMEVIPEAVADANANAKLNGITNTQYEVGKAEELMPRWLDE---------- 417 Query: 287 IHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTIERL 344 +F + VDPPR+GLDD + + Y+SC SL R+L L++ + ++ + Sbjct: 418 --GLQFDALVVDPPRTGLDDELIKQILRVKPRKFAYVSCGMASLARNLRRLTSVYHVDYI 475 Query: 345 ALFDQFPYTRHMECGVLLVRK 365 D P T E V L + Sbjct: 476 QPIDMMPQTARCEAVVKLSLR 496 >gi|329920434|ref|ZP_08277166.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners SPIN 1401G] gi|328936110|gb|EGG32563.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners SPIN 1401G] Length = 448 Score = 256 bits (655), Expect = 3e-66, Method: Composition-based stats. Identities = 85/384 (22%), Positives = 151/384 (39%), Gaps = 39/384 (10%) Query: 3 GTLLIDQYEQQLAEKVDRLRQMMLAF---QVPNLQIFRSEPIHYRMRAEFHIWHDGDDLY 59 L +YE+QL K ++ ++ + N + E YR +A+ + L Sbjct: 80 AALAHMKYERQLEFKKQQVVNLLEKVHLNKKVNDCLASPESTAYRNKAQVPVRMVNGQLE 139 Query: 60 HIMFDQQTKERMRIDYFMPGSLLINALMIEMMA-----------TIRLEPLLRAKLFQID 108 F + + + + + F+ I+A ++ + I+ +R + Sbjct: 140 VGFFRKHSHDLVPMTDFLTTDKKIDAAVVAVRDILRKFNVPAYDEIKHNGEVRYLEIRRS 199 Query: 109 YLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD-RDYV 167 Q +V L DA + L + + L +KT + L ++Y+ Sbjct: 200 KANGQLMIVLVCLHKSFKNLDAVVQAIQSLDNVAC-----VILNHNPHKTNVILGEKEYI 254 Query: 168 ---DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNF 223 + + L ++ SF Q N+ + + + D+ ++ Y G G Sbjct: 255 LAGNGEIVDKIGDLSFKISSQSFFQINSLQTPRLYNLAIQKAQLTANDVVIDAYSGIGTI 314 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 L +A+H +VL VEI + +V+ A+ N N VNN + ++E E Sbjct: 315 GLSVAKHVKKVLGVEIVRDAVKDAKKNAILNGVNNAEYFEGKAEELMPQWANE------- 367 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGM--VQAYPHILYISCNPDSLCRDLSIL-STTHT 340 + IFVDPPR GL D + + I+YISCNP ++ RDL I + + Sbjct: 368 -----GLKTDVIFVDPPRKGLTDTFIKAAVATSPKKIVYISCNPATMIRDLQIFQAAGYD 422 Query: 341 IERLALFDQFPYTRHMECGVLLVR 364 + + D FP T H+E VL+ R Sbjct: 423 FDCIDPVDMFPQTPHVESVVLMSR 446 >gi|325687161|gb|EGD29184.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis SK72] Length = 456 Score = 256 bits (655), Expect = 3e-66, Method: Composition-based stats. Identities = 77/392 (19%), Positives = 149/392 (38%), Gaps = 46/392 (11%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54 ++ Y++QL K D LRQ + F + I EP++YR + +F Sbjct: 81 GCQIMHLHYDKQLEFKEDLLRQALKKFAPAGYENYEIRPTIGMQEPLYYRAKLQFQTRKF 140 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIE---MMATIRLEPLLRAKLFQIDYL- 110 D++ ++ Q + + + + + ++ + ++ RL K + + Sbjct: 141 KDEVKAGLYAQNSHYLVSLKNCLVQDKVTQQIINKVARLLGKYRLPIYDERKTAGVRTVM 200 Query: 111 ---TSQSDQAIVTLIYHRLLD---------DAWRECAIRLRDALHARKYQIQLIGRANKT 158 ++ Q + + R LD + E + ++ +I +KT Sbjct: 201 IRRARKTGQVQMIFVTGRKLDFSPVVRDLVTEFPELETVAVNYHTSKSSEI----YGDKT 256 Query: 159 KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELY 217 +I + + E + + +F Q N + E V A + L++ Y Sbjct: 257 EIIWGEEAIQEGVL----DYEFSLSPRAFYQLNPEQTEVLYAEAVKALDVTKEDHLIDAY 312 Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277 CG G A+ + ++I ++E A+ N +N +++E E Sbjct: 313 CGVGTIGFAFAKKVKSLRGMDIIPEAIEDAKRNAKRMGFDNTLYEAGTAEEIIPRWYAE- 371 Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL 335 YR + VDPPR+GLDD + + + ++Y+SCN +L RDL L Sbjct: 372 -----------GYRADALIVDPPRTGLDDKLLETIVRYSPEKMVYVSCNVSTLARDLVKL 420 Query: 336 STTHTIERLALFDQFPYTRHMECGVLLVRKPS 367 + + + D FP+T E V L ++ S Sbjct: 421 CQVYDVHYIQSVDMFPHTARTEAVVKLSKRNS 452 >gi|332358268|gb|EGJ36096.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis SK355] Length = 463 Score = 256 bits (655), Expect = 3e-66, Method: Composition-based stats. Identities = 80/392 (20%), Positives = 150/392 (38%), Gaps = 46/392 (11%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54 ++ Y++QL K D LRQ + F + I EP++YR + +F Sbjct: 81 GCQIMHLHYDKQLEFKEDLLRQALKKFAPAGYENYEIRPTIGMQEPLYYRAKLQFQTRKF 140 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIE---MMATIRLEPLLRAKLFQIDYL- 110 D++ ++ Q + + + + + ++ + ++ RL K + + Sbjct: 141 KDEVKAGLYAQNSHYLVSLKNCLVQDKVTQQIINKVARLLGKYRLPIYDERKTAGVRTVM 200 Query: 111 ---TSQSDQAIVTLIYHRLLD---------DAWRECAIRLRDALHARKYQIQLIGRANKT 158 ++ Q + + R LD + E + ++ +I +KT Sbjct: 201 IRRARKTGQVQMIFVTGRKLDFSPVVRDLVAEFPELETVAVNYHTSKSSEI----YGDKT 256 Query: 159 KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELY 217 +I + + E + + +F Q N + E V A + L++ Y Sbjct: 257 EIIWGEEAIQEGVL----DYEFSLSPRAFYQLNPEQTEVLYGEAVKALDVTKEDHLIDAY 312 Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277 CG G A+ + ++I ++E A+ N +N +++E E Sbjct: 313 CGGGTIGFAFAKKVKSLRGMDIIPEAIEDAKRNAKRMGFDNTLYEAGTAEEIIPRWYAE- 371 Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL 335 YR + VDPPR+GLDD + + A ++Y+SCN +L RDL L Sbjct: 372 -----------GYRADALIVDPPRTGLDDKLLETIVRYAPEKMVYVSCNVSTLARDLVKL 420 Query: 336 STTHTIERLALFDQFPYTRHMECGVLLVRKPS 367 S + + + D FP+T E V L +K S Sbjct: 421 SRVYDVHYIQSVDMFPHTARTEAVVKLSKKDS 452 >gi|154496435|ref|ZP_02035131.1| hypothetical protein BACCAP_00727 [Bacteroides capillosus ATCC 29799] gi|150274518|gb|EDN01595.1| hypothetical protein BACCAP_00727 [Bacteroides capillosus ATCC 29799] Length = 454 Score = 256 bits (655), Expect = 3e-66, Method: Composition-based stats. Identities = 76/385 (19%), Positives = 144/385 (37%), Gaps = 38/385 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWHDGDD 57 Y ++L K R+ + ++ + + YR + +F + + Sbjct: 84 GCQFRQMNYAEELEAKRIRVEDCLQRIAGLDVTVPVIHGAKDTRRYRNKVQFPVQPGPEG 143 Query: 58 LYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATI-------RLEPLLRAKLFQIDYL 110 + Q+T + + ++ + L ++ + E R + + Sbjct: 144 PRVGFYRQRTHQVISVEDCLLQPETAARLRAAAVSWMQWHNISAYDEKTGRGLVRHVYVR 203 Query: 111 TSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHA-------RKYQIQLIGRANKTKICLD 163 +++ Q++V L+ + LR+ + + + + Sbjct: 204 VNRAGQSLVCLLVNGKSVPQEDALVQALRNVEPGLVGVVLGVNEKKNNVILGDSYRTLWG 263 Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGN 222 +D++++ L +R SF Q NA + L A + +L+LYCG G Sbjct: 264 QDWLEDTLC----GFTFRLSVPSFYQVNANQAEVLYGRALDFAGLTGRETVLDLYCGIGT 319 Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282 SLV+AR +V E+ +VE AR N N VNN + + Sbjct: 320 ISLVMARQAGKVFGAEVVPQAVEDARENALRNGVNNAEFLCGD------------AGEAA 367 Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STTH 339 + + + + VDPPR GL + V + A ++Y+SC+P +L RD+ S + Sbjct: 368 RALAARGVKPDVVCVDPPRKGLAEDVVDTIVSMAPERVVYVSCDPATLARDVKRFVSLGY 427 Query: 340 TIERLALFDQFPYTRHMECGVLLVR 364 + + D FP T H+E VLL R Sbjct: 428 VLRKAEAVDMFPRTAHVESVVLLTR 452 >gi|322391561|ref|ZP_08065030.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus peroris ATCC 700780] gi|321145644|gb|EFX41036.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus peroris ATCC 700780] Length = 455 Score = 256 bits (655), Expect = 3e-66, Method: Composition-based stats. Identities = 78/388 (20%), Positives = 144/388 (37%), Gaps = 40/388 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54 ++ Y++QL K D L Q + F + I +P +YR + +F Sbjct: 81 GCQIMHLHYDKQLEFKTDLLHQALKKFAPAGYENYEIRPTIGMQKPKYYRAKLQFQTRKF 140 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----------LRAKL 104 + ++ Q + + + + A+ + + + +R + Sbjct: 141 KGQVKAGLYAQNSHYLVELKDCLVQDKETQAIANRIAELLTYHQIPITDERKILGVRTIM 200 Query: 105 FQIDYLTSQSDQAIVT---LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161 + T Q IVT L + + D ++ + A++ + I +KT+I Sbjct: 201 VRRARKTGQVQIIIVTNRQLNLTQFVTDLVKDYPEVVTIAVNTNTAKTSEI-YGDKTEII 259 Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGN 220 +D + E + + +F Q N + E V A L++ YCG Sbjct: 260 WGQDSIGEGVL----DYEFSLSPRAFYQLNPEQTEILYSEAVKALDVNENDHLIDAYCGV 315 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G A+ + ++I ++E A+ N N +++E +E Sbjct: 316 GTIGFAFAKKVKSLRGMDIIPEAIEDAKENAKRMGYTNTHYEVGTAEEIIPRWYKE---- 371 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILSTT 338 YR + VDPPR+GLDD + + A ++Y+SCN +L RDL L Sbjct: 372 --------GYRADALIVDPPRTGLDDKLLDTIVKYAPEKMVYVSCNVSTLARDLVRLVEV 423 Query: 339 HTIERLALFDQFPYTRHMECGVLLVRKP 366 + + + D FP+T E V L R+ Sbjct: 424 YDLHYIQSVDMFPHTARTEAVVKLTRRK 451 >gi|322377743|ref|ZP_08052233.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus sp. M334] gi|321281508|gb|EFX58518.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus sp. M334] Length = 456 Score = 256 bits (655), Expect = 3e-66, Method: Composition-based stats. Identities = 80/387 (20%), Positives = 144/387 (37%), Gaps = 40/387 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54 ++ Y++QL K D L Q + F + I EP +YR + +F Sbjct: 81 GCQIMHLHYDKQLEFKTDLLHQALKKFAPAGYENYEIRPTIGMQEPKYYRAKLQFQTRKF 140 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----------LRAKL 104 + + ++ Q + + + + + + + + +R + Sbjct: 141 KNQVKAGLYAQNSHYLVELKDCLVQDKETQVIANRLAELLTFHQIPITDERKVLGVRTIM 200 Query: 105 FQIDYLTSQSDQAIVTLIY---HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161 + T Q IVT +L+ D ++ + A++ + I KT+I Sbjct: 201 VRRARKTGQVQIIIVTNCQLNLTQLVKDLVKDFPEVVTVAVNTNTAKTSEI-YGEKTEII 259 Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGN 220 + E + + +F Q N + E V A + L++ YCG Sbjct: 260 WGEKSIQEGVL----DYEFSLSPRAFYQLNPEQTEVLYSEAVKALDVSKEDHLIDAYCGV 315 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G A+ + ++I ++E A+ N +N S++E +E Sbjct: 316 GTIGFAFAKKVKTLRGMDIIPEAIEDAKRNAKRMGFDNTHYEAGSAEEIIPRWYKE---- 371 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTT 338 YR + VDPPR+GLDD + + Y ++YISCN +L RDL L Sbjct: 372 --------GYRADALIVDPPRTGLDDKLLDTILTYVPEKMVYISCNVSTLARDLVRLVEV 423 Query: 339 HTIERLALFDQFPYTRHMECGVLLVRK 365 + I + D FP+T E V L++K Sbjct: 424 YDIHYIQSVDMFPHTARTEAVVKLIKK 450 >gi|149004435|ref|ZP_01829170.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae SP14-BS69] gi|147757625|gb|EDK64644.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae SP14-BS69] Length = 455 Score = 256 bits (655), Expect = 3e-66, Method: Composition-based stats. Identities = 78/387 (20%), Positives = 147/387 (37%), Gaps = 40/387 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54 ++ Y++QL K D L Q + F + I EP +YR + +F Sbjct: 81 GCQIMHLHYDKQLEFKTDLLHQALKKFAPAGYENYEIRPTIGMQEPKYYRAKLQFQTRKF 140 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----------LRAKL 104 + + ++ Q + + + + + + + + +R + Sbjct: 141 KNQVKAGLYAQNSHYLVELKDCLVQDKETQVIANRLAELLTYHQIPITDERKVLGVRTIM 200 Query: 105 FQIDYLTSQSDQAIVT---LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161 + T Q IVT L +L+ + ++ + A++ + I KT+I Sbjct: 201 VRRARKTGQVQIIIVTNRQLNLTQLVKELVKDFPEVVTVAVNTNTAKTSEI-YGEKTEII 259 Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGN 220 ++ + E + + +F Q N + E V A + L++ YCG Sbjct: 260 WGQESIQEGVL----NYEFSLSPRAFYQLNPEQTEVLYSEAVKALDVDKEDHLIDAYCGV 315 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G A+ + ++I ++E A+ N +N +++E +E Sbjct: 316 GTIGFAFAKKVKTLRGMDIIPEAIEDAKRNAKRMGFDNTHYEAGTAEEIIPRWYKE---- 371 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTT 338 YR + VDPPR+GLDD + + Y ++YISCN +L RDL L Sbjct: 372 --------GYRADALIVDPPRTGLDDKLLDTILTYVPEKMVYISCNVSTLARDLVRLVEV 423 Query: 339 HTIERLALFDQFPYTRHMECGVLLVRK 365 + + + D FP+T E V L++K Sbjct: 424 YDLHYIQSVDMFPHTARTEAVVKLIKK 450 >gi|222055490|ref|YP_002537852.1| RNA methyltransferase, TrmA family [Geobacter sp. FRC-32] gi|221564779|gb|ACM20751.1| RNA methyltransferase, TrmA family [Geobacter sp. FRC-32] Length = 468 Score = 256 bits (655), Expect = 4e-66, Method: Composition-based stats. Identities = 88/388 (22%), Positives = 157/388 (40%), Gaps = 38/388 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN----LQIFRSE-PIHYRMRAEFHIWHDGD 56 LL +Y QLA K + + + + ++ S +HYR A+ + Sbjct: 96 GCALLKMKYPAQLAWKKQLVIKFIRRHKTLEKARLHEVIPSPHQLHYRNSAKLVVSGKFA 155 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIR-----------LEPLLRAKLF 105 D ++ + + E + + LI+ ++ + A I+ LLR + Sbjct: 156 DPVIGIYRRNSHEVLDVAGCAVHHPLIDTIIEAVKAGIKKGKVPIYNPKSQMGLLRYLVI 215 Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD 165 +I + +++A+V + + A L++A+ Q I + I +D Sbjct: 216 RI---SESANKAMVIFVTAERSYNELHHLAKHLKNAVPEVSVIAQNINSSLGNVILGQKD 272 Query: 166 YV---DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNG 221 + ++ L+ + SF Q N+G + E V + +L+LYCG G Sbjct: 273 HFVTKEQVLSAIMGDTKFLISPRSFFQVNSGSARIIYEKVREWAALTGSERVLDLYCGIG 332 Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281 SL LAR V +E +V A N N + N + + + + MRRE + Sbjct: 333 GISLFLARQCKEVTGIEAVDAAVADAERNAQLNGIGNCRFIAGDVAKLIEEMRREDK--- 389 Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILST-T 338 + I ++PPR G D+ + A I+Y+SC+PD+L RDL++L+ Sbjct: 390 ---------KVDLIVLNPPRKGCDEQVLKQASALGPAKIIYVSCSPDTLARDLNLLAGLD 440 Query: 339 HTIERLALFDQFPYTRHMECGVLLVRKP 366 + + D FP T H+E LL +K Sbjct: 441 YETREIQPVDMFPQTPHVENVALLTKKN 468 >gi|332199324|gb|EGJ13401.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae GA47368] gi|332199924|gb|EGJ13998.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae GA47901] Length = 458 Score = 256 bits (655), Expect = 4e-66, Method: Composition-based stats. Identities = 78/387 (20%), Positives = 147/387 (37%), Gaps = 40/387 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54 ++ Y++QL K D L Q + F + I EP +YR + +F Sbjct: 81 GCQIMHLHYDKQLEFKTDLLHQALKKFAPAGYENYEIRPTIGMQEPKYYRAKLQFQTRKF 140 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----------LRAKL 104 + + ++ Q + + + + + + + + +R + Sbjct: 141 KNQVKAGLYAQNSHYLVELKDCLVQDKETQVIANRLAELLTYHQIPITDERKVLGVRTIM 200 Query: 105 FQIDYLTSQSDQAIVT---LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161 + T Q IVT L +L+ + ++ + A++ + I KT+I Sbjct: 201 VRRARKTGQVQIIIVTNRQLNLTQLVKELVKDFPEVVTVAVNTNTAKTSEI-YGEKTEII 259 Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGN 220 ++ + E + + +F Q N + E V A + L++ YCG Sbjct: 260 WGQESIQEGVL----NYEFSLSPRAFYQLNPEQTEVLYSEAVKALDVDKEDHLIDAYCGV 315 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G A+ + ++I ++E A+ N +N +++E +E Sbjct: 316 GTIGFAFAKKVKTLRGMDIIPEAIEDAKRNAKRMGFDNTHYEAGTAEEIIPRWYKE---- 371 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTT 338 YR + VDPPR+GLDD + + Y ++YISCN +L RDL L Sbjct: 372 --------GYRADALIVDPPRTGLDDKLLDTILTYVPEKMVYISCNVSTLARDLVRLVEV 423 Query: 339 HTIERLALFDQFPYTRHMECGVLLVRK 365 + + + D FP+T E V L++K Sbjct: 424 YDLHYIQSVDMFPHTARTEAVVKLIKK 450 >gi|168492125|ref|ZP_02716268.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae CDC0288-04] gi|183573724|gb|EDT94252.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae CDC0288-04] Length = 451 Score = 256 bits (655), Expect = 4e-66, Method: Composition-based stats. Identities = 78/387 (20%), Positives = 147/387 (37%), Gaps = 40/387 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54 ++ Y++QL K D L Q + F + I EP +YR + +F Sbjct: 81 GCQIMHLHYDKQLEFKTDLLHQALKKFAPAGYENYEIRPTIGMQEPKYYRSKLQFQTRKF 140 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----------LRAKL 104 + + ++ Q + + + + + + + + +R + Sbjct: 141 KNQVKAGLYAQNSHYLVELKDCLVQDKETQVIANRLAELLTYHQIPITDERKVLGVRTIM 200 Query: 105 FQIDYLTSQSDQAIVT---LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161 + T Q IVT L +L+ + ++ + A++ + I KT+I Sbjct: 201 VRRARKTGQVQIIIVTNRQLNLTQLVKELVKDFPEVVTVAVNTNTAKTSEI-YGEKTEII 259 Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGN 220 ++ + E + + +F Q N + E V A + L++ YCG Sbjct: 260 WGQESIQEGVL----NYEFSLSPRAFYQLNPEQTEVLYSEAVKALDVDKEDHLIDAYCGV 315 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G A+ + ++I ++E A+ N +N +++E +E Sbjct: 316 GTIGFAFAKKVKTLRGMDIIPEAIEDAKRNAKRMGFDNTHYEAGTAEEIIPRWYKE---- 371 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTT 338 YR + VDPPR+GLDD + + Y ++YISCN +L RDL L Sbjct: 372 --------GYRADALIVDPPRTGLDDKLLDTILTYVPEKMVYISCNVSTLARDLVRLVEV 423 Query: 339 HTIERLALFDQFPYTRHMECGVLLVRK 365 + + + D FP+T E V L++K Sbjct: 424 YDLHYIQSVDMFPHTARTEAVVKLIKK 450 >gi|256848539|ref|ZP_05553980.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus coleohominis 101-4-CHN] gi|256714591|gb|EEU29571.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus coleohominis 101-4-CHN] Length = 474 Score = 256 bits (654), Expect = 4e-66, Method: Composition-based stats. Identities = 80/379 (21%), Positives = 135/379 (35%), Gaps = 41/379 (10%) Query: 10 YEQQLAEKVDRLRQMMLAFQV-------PNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIM 62 Y QL K + + + F+ I + YR +A+F I + + Sbjct: 109 YPAQLRFKRQMVIESLAKFKPRGYRHYEVRPTIGSEKQYGYRNKAQFQIRQQNGKVVAGL 168 Query: 63 FDQQTKERMRIDYFMPG-----------SLLINALMIEMMATIRLEPLLRAKLFQIDYLT 111 + + E + + I L I + +L+ + + + Sbjct: 169 YRSGSHEVVDMQECAVQMPGIMRVMRALVDKIAQLKIPLYDESNHSGILKTIVVRE---S 225 Query: 112 SQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYV---- 167 + + Q VT I + + + + L + +Q I + T + + + Sbjct: 226 ATTHQIQVTFITNSPKLLKKHQLLTFIAEKLPSVVSVMQNINPGD-TPLVWGTETIHLAG 284 Query: 168 DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLV 226 D +T + L + SF Q N + E A + D L++ Y G G L Sbjct: 285 DSYITDSLMGLDFHLSARSFLQLNPYQTETLYEEAAKAMELTSTDTLIDAYAGIGTIGLA 344 Query: 227 LARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDID 286 LA V +EI +V A N N++ N K S++E R E Sbjct: 345 LASRVHEVRGMEIIPEAVADANQNATLNNITNAKYETGSAEELLPKWRAE---------- 394 Query: 287 IHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILSTTHTIERL 344 F + VDPPR+GLD+ + + YISCN SL R+L+ L T+ ++ + Sbjct: 395 --GLHFDALVVDPPRTGLDNKLIQQILQEKPTKFAYISCNMASLARNLARLVPTYRVDYI 452 Query: 345 ALFDQFPYTRHMECGVLLV 363 D P T E V L Sbjct: 453 QPIDMMPQTARCEAVVKLS 471 >gi|90961349|ref|YP_535265.1| tRNA (Uracil-5-) -methyltransferase [Lactobacillus salivarius UCC118] gi|90820543|gb|ABD99182.1| tRNA (Uracil-5-) -methyltransferase [Lactobacillus salivarius UCC118] Length = 459 Score = 256 bits (654), Expect = 4e-66, Method: Composition-based stats. Identities = 75/381 (19%), Positives = 151/381 (39%), Gaps = 40/381 (10%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWH-DGDDLYHI 61 Y +QL K D +RQ + F+ N + + P YR +A+F + G+ + Sbjct: 94 YSKQLEFKTDVIRQSLEKFKPTNYENMELRPTLGMEVPYEYRNKAQFQVRKVKGNKVIAG 153 Query: 62 MFDQQTKERMRIDYF---MPGSLLINALMIEMMATIRLE--------PLLRAKLFQIDYL 110 ++ + + + F MP ++ I +++++ + +L+ + + Sbjct: 154 LYKPNSHILVDLPTFKTQMPLTMEIMRKIVKLLEKWNISIYDERRNSGILKTVVIRQ--- 210 Query: 111 TSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY---V 167 T +++Q + + R + + A +Q I + + + + + Sbjct: 211 TLKTEQVQIVFVTARNNCANLNQVVNEIMAAYPQIVSVMQNINPSRSSLVWGEETFKLAG 270 Query: 168 DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLV 226 +RL + + SF Q N + V A + + L++ YCG G L Sbjct: 271 TDRLLEQLGDIKFELSARSFFQLNPSQTEVLYTEVKKALDLKEDETLVDAYCGVGTIGLF 330 Query: 227 LARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDID 286 ++ V ++I ++E A+ N + N+ +++ + Sbjct: 331 VSPDAKEVRGMDIIPEAIEDAKKNAELSGRKNIHYEVGKAEDLFAKWTK----------- 379 Query: 287 IHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILSTTHTIERL 344 + + + VDPPR+GLDD + + Y +Y+SCNP +L RDL L + +E + Sbjct: 380 -NDFVPDALVVDPPRTGLDDKMIETILKYRPNKFVYVSCNPSTLARDLVKLVKIYNVEYI 438 Query: 345 ALFDQFPYTRHMECGVLLVRK 365 D FP T +E V L +K Sbjct: 439 QSVDMFPQTARVEAVVKLSKK 459 >gi|148998432|ref|ZP_01825873.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae SP11-BS70] gi|147755625|gb|EDK62671.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae SP11-BS70] Length = 451 Score = 256 bits (654), Expect = 4e-66, Method: Composition-based stats. Identities = 78/387 (20%), Positives = 147/387 (37%), Gaps = 40/387 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54 ++ Y++QL K D L Q + F + I EP +YR + +F Sbjct: 81 GCQIMHLHYDKQLEFKTDLLHQALKKFAPAGYENYEIRPTIGMQEPKYYRAKLQFQTRKF 140 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----------LRAKL 104 + + ++ Q + + + + + + + + +R + Sbjct: 141 KNQVKAGLYAQNSHYLVELKDCLVQDKETQVIANRLAELLTYHQIPITDERKVLGVRTIM 200 Query: 105 FQIDYLTSQSDQAIVT---LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161 + T Q IVT L +L+ + ++ + A++ + I KT+I Sbjct: 201 VRRARKTGQVQIIIVTNRQLNLTQLVKELVKDFPEVVTVAVNTNTAKTSEI-YGEKTEII 259 Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGN 220 ++ + E + + +F Q N + E V A + L++ YCG Sbjct: 260 WGQESIQEGVL----NYEFSLSPRAFYQLNPEQTEVLYSEAVKALDVDKEDHLIDAYCGV 315 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G A+ + ++I ++E A+ N +N +++E +E Sbjct: 316 GTIGFAFAKKVKTLRGMDIIPEAIEDAKRNAKRMGFDNTHYEAGTAEEIIPRWYKE---- 371 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTT 338 YR + VDPPR+GLDD + + Y ++YISCN +L RDL L Sbjct: 372 --------GYRADALIVDPPRTGLDDKLLDTILTYVPEKMVYISCNVSTLARDLVRLVEV 423 Query: 339 HTIERLALFDQFPYTRHMECGVLLVRK 365 + + + D FP+T E V L++K Sbjct: 424 YDLHYIQSVDMFPHTARTEAVVKLIKK 450 >gi|281491671|ref|YP_003353651.1| 23S rRNA m(5)U 1939 methyltransferase [Lactococcus lactis subsp. lactis KF147] gi|281375389|gb|ADA64902.1| 23S rRNA m(5)U 1939 methyltransferase [Lactococcus lactis subsp. lactis KF147] Length = 460 Score = 256 bits (654), Expect = 4e-66, Method: Composition-based stats. Identities = 74/380 (19%), Positives = 142/380 (37%), Gaps = 33/380 (8%) Query: 7 IDQYEQQLAEK----VDRLRQMMLAFQVPNLQIFRS-EPIHYRMRAEFHIWHDGDDLYHI 61 Y++Q+ K VD LR+ P L + + + I+YR +A+ + L Sbjct: 93 HLSYDEQVKFKHKQVVDILRKTAGKSDYPVLPVVEAIKTINYRNKAQIPVQMVDGLLTTG 152 Query: 62 MFDQQTKERMRIDYFMPGSLLINALMIEMMATI-------RLEPLLRAKLFQIDYLTS-Q 113 + + + + ++ F I+A+++ + E + L I + Sbjct: 153 FYRKNSHTLIPVEDFYIQHPEIDAVVLFLRDEFRKINLQAYDEKTRKGWLRNIVVRRAFH 212 Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYV----DE 169 + + ++TL+ E I +QL + L ++++ + Sbjct: 213 TGEMMITLVVTSKKLPEKVELVIDHLVERFTNIKSVQLNINSGTGSFILGKEFILLYGKD 272 Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLA 228 +T Y+ +F Q N + E GD+ ++ Y G G + +A Sbjct: 273 FITDLMLDKTYQISAPAFYQVNTPQAEKLYETAYEFAGLKPGDVVIDAYSGIGTIGISMA 332 Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288 +V +E+ +VE A+ N N + N ++++ E Sbjct: 333 DRVAKVYGMEVVLAAVENAKRNAQLNELENTHYEVGAAEKIMPKWLSE------------ 380 Query: 289 SYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILS-TTHTIERLA 345 + IFVDPPR GLD+ + I+YISCNP + RD+ + ++++ Sbjct: 381 GIKPDVIFVDPPRKGLDEGFIKAAAMMNPRRIVYISCNPATFARDVVRFEAEGYLLDKVQ 440 Query: 346 LFDQFPYTRHMECGVLLVRK 365 D FP T H+E +K Sbjct: 441 PVDLFPQTHHIELVASFNKK 460 >gi|332367359|gb|EGJ45092.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis SK1059] Length = 456 Score = 256 bits (654), Expect = 4e-66, Method: Composition-based stats. Identities = 79/392 (20%), Positives = 148/392 (37%), Gaps = 46/392 (11%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54 ++ Y++QL K D LRQ + F + I EP++YR + +F Sbjct: 81 GCQIMHLHYDKQLEFKEDLLRQALKKFAPAGYENYEIRPTIGMQEPLYYRAKLQFQTRKY 140 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----------LRAKL 104 D++ ++ Q + + + + + ++ ++ + L +R + Sbjct: 141 KDEVKAGLYAQNSHYLVSLKNCLVQDKVTQQIINKVARLLGKYKLPIYDERKTAGVRTVM 200 Query: 105 FQIDYLTSQSDQAIVTLIY------HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKT 158 + T Q VT R L + E + ++ +I +KT Sbjct: 201 IRRSRKTGQVQMIFVTGRKLDFSPVVRDLVAEFPELETVAVNYHTSKSSEI----YGDKT 256 Query: 159 KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELY 217 +I + + E + + +F Q N + E V A + L++ Y Sbjct: 257 EIIWGEEAIQEGVL----DYEFSLSPRAFYQLNPEQTEVLYGEAVKALDVTEEDHLIDAY 312 Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277 CG G+ A+ + ++I ++E A+ N +N +++E E Sbjct: 313 CGVGSIGFAFAKRVKSLRGMDIIPEAIEDAKRNAKRMGFDNTLYEAGTAEEIIPRWYAE- 371 Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL 335 YR + VDPPR+GLDD + + A ++Y+SCN +L RDL L Sbjct: 372 -----------GYRANALIVDPPRTGLDDKLLETIVRYAPKKMVYVSCNVSTLARDLVKL 420 Query: 336 STTHTIERLALFDQFPYTRHMECGVLLVRKPS 367 + + + D FP+T E V L ++ S Sbjct: 421 CQVYDVHYIQSVDMFPHTARTEAVVKLSKRDS 452 >gi|327462889|gb|EGF09210.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis SK1] Length = 456 Score = 256 bits (654), Expect = 4e-66, Method: Composition-based stats. Identities = 79/392 (20%), Positives = 150/392 (38%), Gaps = 46/392 (11%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54 ++ Y++QL K D LRQ + F + I EP++YR + +F Sbjct: 81 GCQIMHLHYDKQLEFKEDLLRQALKKFAPAGYENYEIRPTIGMQEPLYYRAKLQFQTRKF 140 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGSLL---INALMIEMMATIRLEPLLRAKLFQIDYL- 110 D++ ++ Q + + + + + I + ++ RL K + + Sbjct: 141 KDEVKAGLYAQNSHYLVSLKNCLVQDKVTQKIINKVARLLGKYRLPIYDERKTAGVRTVM 200 Query: 111 ---TSQSDQAIVTLIYHRLLD---------DAWRECAIRLRDALHARKYQIQLIGRANKT 158 + ++ Q + + R LD + E + ++ +I +KT Sbjct: 201 IRRSRKTGQVQMIFVTGRKLDFSPVVRDLVAEFPELETVAVNYHTSKSSEI----YGDKT 256 Query: 159 KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELY 217 +I + + E + + +F Q N + E V A + L++ Y Sbjct: 257 EIIWGEEAIQEGVL----DYEFSLSPRAFYQLNPEQTEVLYGEAVKALDVTEEDHLIDAY 312 Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277 CG G+ A+ + ++I ++E A+ N +N +++E E Sbjct: 313 CGVGSIGFAFAKRVKSLRGMDIIPEAIEDAKRNAKRMGFDNTLYEAGTAEEIIPRWYAE- 371 Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL 335 YR + VDPPR+GLDD + + A ++Y+SCN +L RDL L Sbjct: 372 -----------GYRANALIVDPPRTGLDDKLLETIVRYAPKKMVYVSCNVSTLARDLVKL 420 Query: 336 STTHTIERLALFDQFPYTRHMECGVLLVRKPS 367 + + + D FP+T E V L ++ S Sbjct: 421 CQVYDVHYIQSVDMFPHTARTEAVVKLSKRDS 452 >gi|324993619|gb|EGC25538.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis SK405] gi|324995069|gb|EGC26982.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis SK678] gi|327490048|gb|EGF21836.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis SK1058] Length = 456 Score = 256 bits (654), Expect = 4e-66, Method: Composition-based stats. Identities = 79/392 (20%), Positives = 150/392 (38%), Gaps = 46/392 (11%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54 ++ Y++QL K D LRQ + F + I EP++YR + +F Sbjct: 81 GCQIMHLHYDKQLEFKEDLLRQALKKFAPAGYENYEIRPTIGMQEPLYYRAKLQFQTRKF 140 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGSLL---INALMIEMMATIRLEPLLRAKLFQIDYL- 110 D++ ++ Q + + + + + I + ++ RL K + + Sbjct: 141 KDEVKAGLYAQNSHYLVSLKNCLVQDKVTQKIINKVARLLGKYRLPIYDERKTAGVRTVM 200 Query: 111 ---TSQSDQAIVTLIYHRLLD---------DAWRECAIRLRDALHARKYQIQLIGRANKT 158 + ++ Q + + R LD + E + ++ +I +KT Sbjct: 201 IRRSRKTGQVQMIFVTGRKLDFSPVVRDLVAEFPELETVAVNYHTSKSSEI----YGDKT 256 Query: 159 KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELY 217 +I + + E + + +F Q N + E V A + L++ Y Sbjct: 257 EIIWGEEAIQEGVL----DYEFSLSPRAFYQLNPEQTEVLYGEAVKALDVTEEDHLIDAY 312 Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277 CG G+ A+ + ++I ++E A+ N +N +++E E Sbjct: 313 CGVGSIGFAFAKRVKSLRGMDIIPEAIEDAKRNAKRMGFDNTLYEAGTAEEIIPRWYAE- 371 Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL 335 YR + VDPPR+GLDD + + A ++Y+SCN +L RDL L Sbjct: 372 -----------GYRANALIVDPPRTGLDDKLLETIVRYAPKKMVYVSCNVSTLARDLVKL 420 Query: 336 STTHTIERLALFDQFPYTRHMECGVLLVRKPS 367 + + + D FP+T E V L ++ S Sbjct: 421 CQVYDVHYIQSVDMFPHTARTEAVVKLSKRDS 452 >gi|160893946|ref|ZP_02074725.1| hypothetical protein CLOL250_01501 [Clostridium sp. L2-50] gi|156864324|gb|EDO57755.1| hypothetical protein CLOL250_01501 [Clostridium sp. L2-50] Length = 402 Score = 256 bits (654), Expect = 4e-66, Method: Composition-based stats. Identities = 78/380 (20%), Positives = 149/380 (39%), Gaps = 38/380 (10%) Query: 6 LIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMR--AEFHIWHDGDDLYHIMF 63 ++Y + L +K + +++ F + + P +YR + AEF + + Sbjct: 34 TDEEYRRLLVKKQAEMEKLLSGFAPVDPIVGMENPYYYRNKVCAEFR-KLKNGTIISGRY 92 Query: 64 DQQTKERMRIDYFMPGSLLINALMIEM-----------MATIRLEPLLRAKLFQIDYLTS 112 + T + +A++ ++ L+R L + + T Sbjct: 93 QEGTHNVIETKGCKIEDQRADAIIQDITGLFRSFKMMIYNEDSGYGLIRHVLIRTAHQTG 152 Query: 113 QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQL----IGRANKTKICLDRDYVD 168 Q IVT + ++L + I + + ++ ++ + Y++ Sbjct: 153 QIMVIIVTASPVFPSKKNFANALLKLHPEITTIVQNINIKDTNMVLGDRNQVIYGKGYIE 212 Query: 169 ERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNFSLVL 227 + L +R SF Q N+ + + A + +++ YCG G +V Sbjct: 213 DVLCGK----RFRLSPGSFYQINSVQTEKLYNKAIKYADLKKKETVIDAYCGIGTIGIVA 268 Query: 228 ARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDI 287 + RV+ VE+ ++ A+ N N + N++ + F L D D Sbjct: 269 SDRAKRVIGVELNAEAIRDAKINSRMNKIENIEFYANDAGRFMV---------ELADADE 319 Query: 288 HSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST-THTIERL 344 H +F+DPPRSG + + V + ++YISC PD+L RDL L+T + + ++ Sbjct: 320 H---IDVVFMDPPRSGSTEEFLSSVVTLSPRKVVYISCGPDTLARDLKYLTTHGYQVLKI 376 Query: 345 ALFDQFPYTRHMECGVLLVR 364 FD FP+T H E LL R Sbjct: 377 TPFDLFPFTEHTEVVTLLTR 396 >gi|15901728|ref|NP_346332.1| RNA methyltransferase [Streptococcus pneumoniae TIGR4] gi|111656930|ref|ZP_01407750.1| hypothetical protein SpneT_02001826 [Streptococcus pneumoniae TIGR4] gi|14973406|gb|AAK75972.1| RNA methyltransferase, TrmA family [Streptococcus pneumoniae TIGR4] Length = 436 Score = 256 bits (654), Expect = 4e-66, Method: Composition-based stats. Identities = 78/387 (20%), Positives = 147/387 (37%), Gaps = 40/387 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54 ++ Y++QL K D L Q + F + I EP +YR + +F Sbjct: 66 GCQIMHLHYDKQLEFKTDLLHQALKKFAPAGYENYEIRPTIGMQEPKYYRAKLQFQTRKF 125 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----------LRAKL 104 + + ++ Q + + + + + + + + +R + Sbjct: 126 KNQVKAGLYAQNSHYLVELKDCLVQDKETQVIANRLAELLTYHQIPITDERKVLGVRTIM 185 Query: 105 FQIDYLTSQSDQAIVT---LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161 + T Q IVT L +L+ + ++ + A++ + I KT+I Sbjct: 186 VRRARKTGQVQIIIVTNRQLNLTQLVKELVKDFPEVVTVAVNTNTAKTSEI-YGEKTEII 244 Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGN 220 ++ + E + + +F Q N + E V A + L++ YCG Sbjct: 245 WGQESIQEGVL----NYEFSLSPRAFYQLNPEQTEVLYSEAVKALDVDKEDHLIDAYCGV 300 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G A+ + ++I ++E A+ N +N +++E +E Sbjct: 301 GTIGFAFAKKVKTLRGMDIIPEAIEDAKRNAKRMGFDNTHYEAGTAEEIIPRWYKE---- 356 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTT 338 YR + VDPPR+GLDD + + Y ++YISCN +L RDL L Sbjct: 357 --------GYRADALIVDPPRTGLDDKLLDTILTYVPEKMVYISCNVSTLARDLVRLVEV 408 Query: 339 HTIERLALFDQFPYTRHMECGVLLVRK 365 + + + D FP+T E V L++K Sbjct: 409 YDLHYIQSVDMFPHTARTEAVVKLIKK 435 >gi|304316338|ref|YP_003851483.1| RNA methyltransferase, TrmA family [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302777840|gb|ADL68399.1| RNA methyltransferase, TrmA family [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 450 Score = 256 bits (654), Expect = 4e-66, Method: Composition-based stats. Identities = 87/390 (22%), Positives = 159/390 (40%), Gaps = 46/390 (11%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWHDGDD 57 L YE QL K D +++++ + + + + + YR + E+ D + Sbjct: 79 GCAYLNINYEDQLKLKEDYVKKLLDEAGIKDFEFLGIVRSPDAFLYRNKMEYTFGKDDNG 138 Query: 58 LYHI-------MFDQQTKERMRIDYFMPGSLLINALMIEMMATIRL------EPLLRAKL 104 + + +D T E RI + L N L + E LR + Sbjct: 139 ISQLGLHVKGRFYDIVTTEDCRIVDSDFITCLKNVLRYVEEHGLPHYNIKTHEGYLRHLV 198 Query: 105 FQIDYLTSQSDQAIVTLIYHR----LLDDAWRECAI--RLRDALHARKYQIQLIGRANKT 158 + T + +VT + L D R + +L LH + K Sbjct: 199 VRKAANTGEVIINVVTTSQIKHDFSKLVDELRSIKLNGKLIGILHTVNDSYSDAVKCEKL 258 Query: 159 KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELY 217 + RDY+ + + L ++ SF Q N+ + I +L +LY Sbjct: 259 TVLYGRDYIMDEIL----GLKFKISAFSFFQTNSKGAEKLYSIAREFAGEISNKILFDLY 314 Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277 CG G +++A +V+ VE+ + +V+AAR N N ++N++ + Sbjct: 315 CGTGTIGIIMAPLAKKVIGVELVEEAVDAARENARLNGLSNIQFIAGDVA---------- 364 Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDD-ATVGMVQAYP-HILYISCNPDSLCRDLSIL 335 + I + + + +DPPR G++ A + +++ P I+Y+SCNP SL RDL + Sbjct: 365 -----QKIKEINEKPDVVVLDPPRPGVNPKAILDIIKLNPEKIIYVSCNPVSLTRDLKMF 419 Query: 336 STT-HTIERLALFDQFPYTRHMECGVLLVR 364 + + +E++ D FP+T H+EC L+ R Sbjct: 420 NERQYKVEKVKCVDMFPHTPHVECVTLMSR 449 >gi|324991264|gb|EGC23197.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis SK353] Length = 456 Score = 256 bits (654), Expect = 5e-66, Method: Composition-based stats. Identities = 78/392 (19%), Positives = 149/392 (38%), Gaps = 46/392 (11%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54 ++ Y++QL K D LRQ + F + I EP++YR + +F Sbjct: 81 GCQIMHLHYDKQLEFKEDLLRQALKKFAPAGYENYEIRPTIGMQEPLYYRAKLQFQTQKF 140 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIE---MMATIRLEPLLRAKLFQIDYL- 110 D++ ++ Q + + + + + ++ + ++ RL K + + Sbjct: 141 KDEVKAGLYAQNSHYLVSLKNCLVQDKVTQQIINKVARLLGKYRLPIYDERKTAGVRTVM 200 Query: 111 ---TSQSDQAIVTLIYHRLLD---------DAWRECAIRLRDALHARKYQIQLIGRANKT 158 ++ Q + + R LD + E + ++ +I +KT Sbjct: 201 IRRARKTGQVQMIFVTGRKLDFSPVVRDLVAEFPELETVAVNYHTSKSSEI----YGDKT 256 Query: 159 KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELY 217 +I + + E + + +F Q N + E V A + L++ Y Sbjct: 257 EIIWGEEAIQEGVL----DYEFSLSPRAFYQLNPEQTEVLYGEAVKALDVTEEDHLIDAY 312 Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277 CG G A+ + ++I ++E A+ N +N +++E E Sbjct: 313 CGVGTIGFAFAKKVKSLRGMDIIPEAIEDAKRNAKRMGFDNTLYEAGTAEEIIPRWYAE- 371 Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL 335 YR + VDPPR+GLD+ + + A ++Y+SCN +L RDL L Sbjct: 372 -----------GYRADALIVDPPRTGLDNKLLETIVRYAPEKMVYVSCNVSTLARDLVKL 420 Query: 336 STTHTIERLALFDQFPYTRHMECGVLLVRKPS 367 + + + D FP+T E V L +K S Sbjct: 421 CQVYDVHYIQSVDMFPHTARTEAVVKLSKKDS 452 >gi|227511681|ref|ZP_03941730.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus buchneri ATCC 11577] gi|227085071|gb|EEI20383.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus buchneri ATCC 11577] Length = 472 Score = 256 bits (653), Expect = 5e-66, Method: Composition-based stats. Identities = 75/381 (19%), Positives = 144/381 (37%), Gaps = 41/381 (10%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPN-------LQIFRSEPIHYRMRAEFHIWHDGDDLYHIM 62 Y +QL K D ++ + ++ I +P HYR +A F I +DG + + Sbjct: 108 YPKQLEFKRDVIKDSLEKYKPAGYRKYKLLPTIGMDDPTHYRNKATFQIRNDGQKVIAGL 167 Query: 63 FDQQTKERMR-----------IDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLT 111 + ++ + + +I+ L I + + +++ + + Sbjct: 168 YKHRSHTVVDLKTSALQYPLTMKVMRAVVEMIDDLGIPVYDEEKNAGIIKTVVVR---AA 224 Query: 112 SQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVD--- 168 + +D+A VT I + R+ L +Q + KT + + + Sbjct: 225 TATDEAQVTFITQSKKLLKKHQLLERIDHDLPEVVSVMQNVNPG-KTSLVWGEETIHLAG 283 Query: 169 -ERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELYCGNGNFSLV 226 +++T L + +F Q N + + + A + L++ Y G G L Sbjct: 284 KDKITEVLNNLSFDLSARAFLQVNPEMTAVLYQEAFKALELSGKEKLVDAYSGVGTIGLS 343 Query: 227 LARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDID 286 +AR V ++ K +V+ A N N + N +++ + Sbjct: 344 VARQVREVRGMDTIKDAVDDANANAIKNGIVNALYEVGEAEKLLPLWIED---------- 393 Query: 287 IHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTIERL 344 + + VDPPR+GL D+ + + +YISCNP +L RDL L+ + +E + Sbjct: 394 --GWNPTAMIVDPPRTGLADSLIDTILDITPKKFVYISCNPSTLARDLVKLTRKYNVEYI 451 Query: 345 ALFDQFPYTRHMECGVLLVRK 365 D P T EC V +K Sbjct: 452 QSVDLMPQTSRCECVVKFKKK 472 >gi|221232637|ref|YP_002511791.1| RNA methyltransferase [Streptococcus pneumoniae ATCC 700669] gi|307128099|ref|YP_003880130.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae 670-6B] gi|220675099|emb|CAR69679.1| putative RNA methyltransferase [Streptococcus pneumoniae ATCC 700669] gi|301794862|emb|CBW37321.1| putative RNA methyltransferase [Streptococcus pneumoniae INV104] gi|301800678|emb|CBW33323.1| putative RNA methyltransferase [Streptococcus pneumoniae OXC141] gi|301802595|emb|CBW35356.1| putative RNA methyltransferase [Streptococcus pneumoniae INV200] gi|306485161|gb|ADM92030.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae 670-6B] Length = 447 Score = 256 bits (653), Expect = 5e-66, Method: Composition-based stats. Identities = 78/387 (20%), Positives = 147/387 (37%), Gaps = 40/387 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54 ++ Y++QL K D L Q + F + I EP +YR + +F Sbjct: 77 GCQIMHLHYDKQLEFKTDLLHQALKKFAPAGYENYEIRPTIGMQEPKYYRAKLQFQTRKF 136 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----------LRAKL 104 + + ++ Q + + + + + + + + +R + Sbjct: 137 KNQVKAGLYAQNSHYLVELKDCLVQDKETQVIANRLAELLTYHQIPITDERKVLGVRTIM 196 Query: 105 FQIDYLTSQSDQAIVT---LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161 + T Q IVT L +L+ + ++ + A++ + I KT+I Sbjct: 197 VRRARKTGQVQIIIVTNRQLNLTQLVKELVKDFPEVVTVAVNTNTAKTSEI-YGEKTEII 255 Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGN 220 ++ + E + + +F Q N + E V A + L++ YCG Sbjct: 256 WGQESIQEGVL----NYEFSLSPRAFYQLNPEQTEVLYSEAVKALDVDKEDHLIDAYCGV 311 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G A+ + ++I ++E A+ N +N +++E +E Sbjct: 312 GTIGFAFAKKVKTLRGMDIIPEAIEDAKRNAKRMGFDNTHYEAGTAEEIIPRWYKE---- 367 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTT 338 YR + VDPPR+GLDD + + Y ++YISCN +L RDL L Sbjct: 368 --------GYRADALIVDPPRTGLDDKLLDTILTYVPEKMVYISCNVSTLARDLVRLVEV 419 Query: 339 HTIERLALFDQFPYTRHMECGVLLVRK 365 + + + D FP+T E V L++K Sbjct: 420 YDLHYIQSVDMFPHTARTEAVVKLIKK 446 >gi|15903759|ref|NP_359309.1| hypothetical protein spr1717 [Streptococcus pneumoniae R6] gi|116516423|ref|YP_817130.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae D39] gi|148993227|ref|ZP_01822793.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae SP9-BS68] gi|149007378|ref|ZP_01831021.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae SP18-BS74] gi|149023453|ref|ZP_01836042.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae SP23-BS72] gi|168484910|ref|ZP_02709855.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae CDC1873-00] gi|168576690|ref|ZP_02722556.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae MLV-016] gi|225855340|ref|YP_002736852.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae JJA] gi|237650428|ref|ZP_04524680.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae CCRI 1974] gi|237822275|ref|ZP_04598120.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae CCRI 1974M2] gi|307068518|ref|YP_003877484.1| SAM-dependent methyltransferase [Streptococcus pneumoniae AP200] gi|50401572|sp|Q8DNH6|Y1717_STRR6 RecName: Full=Uncharacterized RNA methyltransferase spr1717 gi|50401780|sp|Q97NV8|Y1901_STRPN RecName: Full=Uncharacterized RNA methyltransferase SP_1901 gi|15459395|gb|AAL00520.1| Conserved hypothetical protein [Streptococcus pneumoniae R6] gi|116076999|gb|ABJ54719.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae D39] gi|147760950|gb|EDK67919.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae SP18-BS74] gi|147928201|gb|EDK79219.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae SP9-BS68] gi|147929776|gb|EDK80766.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae SP23-BS72] gi|172041937|gb|EDT49983.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae CDC1873-00] gi|183577662|gb|EDT98190.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae MLV-016] gi|225723744|gb|ACO19597.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae JJA] gi|306410055|gb|ADM85482.1| SAM-dependent methyltransferase [Streptococcus pneumoniae AP200] gi|332072242|gb|EGI82726.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae GA41301] Length = 451 Score = 256 bits (653), Expect = 5e-66, Method: Composition-based stats. Identities = 78/387 (20%), Positives = 147/387 (37%), Gaps = 40/387 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54 ++ Y++QL K D L Q + F + I EP +YR + +F Sbjct: 81 GCQIMHLHYDKQLEFKTDLLHQALKKFAPAGYENYEIRPTIGMQEPKYYRAKLQFQTRKF 140 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----------LRAKL 104 + + ++ Q + + + + + + + + +R + Sbjct: 141 KNQVKAGLYAQNSHYLVELKDCLVQDKETQVIANRLAELLTYHQIPITDERKVLGVRTIM 200 Query: 105 FQIDYLTSQSDQAIVT---LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161 + T Q IVT L +L+ + ++ + A++ + I KT+I Sbjct: 201 VRRARKTGQVQIIIVTNRQLNLTQLVKELVKDFPEVVTVAVNTNTAKTSEI-YGEKTEII 259 Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGN 220 ++ + E + + +F Q N + E V A + L++ YCG Sbjct: 260 WGQESIQEGVL----NYEFSLSPRAFYQLNPEQTEVLYSEAVKALDVDKEDHLIDAYCGV 315 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G A+ + ++I ++E A+ N +N +++E +E Sbjct: 316 GTIGFAFAKKVKTLRGMDIIPEAIEDAKRNAKRMGFDNTHYEAGTAEEIIPRWYKE---- 371 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTT 338 YR + VDPPR+GLDD + + Y ++YISCN +L RDL L Sbjct: 372 --------GYRADALIVDPPRTGLDDKLLDTILTYVPEKMVYISCNVSTLARDLVRLVEV 423 Query: 339 HTIERLALFDQFPYTRHMECGVLLVRK 365 + + + D FP+T E V L++K Sbjct: 424 YDLHYIQSVDMFPHTARTEAVVKLIKK 450 >gi|148985480|ref|ZP_01818669.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae SP3-BS71] gi|147922200|gb|EDK73321.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae SP3-BS71] Length = 463 Score = 256 bits (653), Expect = 5e-66, Method: Composition-based stats. Identities = 78/387 (20%), Positives = 147/387 (37%), Gaps = 40/387 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54 ++ Y++QL K D L Q + F + I EP +YR + +F Sbjct: 81 GCQIMHLHYDKQLEFKTDLLHQALKKFAPAGYENYEIRPTIGMQEPKYYRAKLQFQTRKF 140 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----------LRAKL 104 + + ++ Q + + + + + + + + +R + Sbjct: 141 KNQVKAGLYAQNSHYLVELKDCLVQDKETQVIANRLAELLTYHQIPITDERKVLGVRTIM 200 Query: 105 FQIDYLTSQSDQAIVT---LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161 + T Q IVT L +L+ + ++ + A++ + I KT+I Sbjct: 201 VRRARKTGQVQIIIVTNRQLNLTQLVKELVKDFPEVVTVAVNTNTAKTSEI-YGEKTEII 259 Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGN 220 ++ + E + + +F Q N + E V A + L++ YCG Sbjct: 260 WGQESIQEGVL----NYEFSLSPRAFYQLNPEQTEVLYSEAVKALDVDKEDHLIDAYCGV 315 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G A+ + ++I ++E A+ N +N +++E +E Sbjct: 316 GTIGFAFAKKVKTLRGMDIIPEAIEDAKRNAKRMGFDNTHYEAGTAEEIIPRWYKE---- 371 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTT 338 YR + VDPPR+GLDD + + Y ++YISCN +L RDL L Sbjct: 372 --------GYRADALIVDPPRTGLDDKLLDTILTYVPEKMVYISCNVSTLARDLVRLVEV 423 Query: 339 HTIERLALFDQFPYTRHMECGVLLVRK 365 + + + D FP+T E V L++K Sbjct: 424 YDLHYIQSVDMFPHTARTEAVVKLIKK 450 >gi|168494763|ref|ZP_02718906.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae CDC3059-06] gi|183575365|gb|EDT95893.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae CDC3059-06] Length = 458 Score = 256 bits (653), Expect = 5e-66, Method: Composition-based stats. Identities = 78/387 (20%), Positives = 147/387 (37%), Gaps = 40/387 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54 ++ Y++QL K D L Q + F + I EP +YR + +F Sbjct: 81 GCQIMHLHYDKQLEFKTDLLHQALKKFAPAGYENYEIRPTIGMQEPKYYRAKLQFQTRKF 140 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----------LRAKL 104 + + ++ Q + + + + + + + + +R + Sbjct: 141 KNQVKAGLYAQNSHYLVELKDCLVQDKETQVIANRLAELLTYHQIPITDERKVLGVRTIM 200 Query: 105 FQIDYLTSQSDQAIVT---LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161 + T Q IVT L +L+ + ++ + A++ + I KT+I Sbjct: 201 VRRARKTGQVQIIIVTNRQLNLTQLVKELVKDFPEVVTVAVNTNTAKTSEI-YGEKTEII 259 Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGN 220 ++ + E + + +F Q N + E V A + L++ YCG Sbjct: 260 WGQESIQEGVL----NYEFSLSPRAFYQLNPEQTEVLYSEAVKALDVDKEDHLIDAYCGV 315 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G A+ + ++I ++E A+ N +N +++E +E Sbjct: 316 GTIGFAFAKKVKTLRGMDIIPEAIEDAKRNAKRMGFDNTHYEAGTAEEIIPRWYKE---- 371 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTT 338 YR + VDPPR+GLDD + + Y ++YISCN +L RDL L Sbjct: 372 --------GYRADALIVDPPRTGLDDKLLDTILTYVPEKMVYISCNVSTLARDLVRLVEV 423 Query: 339 HTIERLALFDQFPYTRHMECGVLLVRK 365 + + + D FP+T E V L++K Sbjct: 424 YDLHYIQSVDMFPHTARTEAVVKLIKK 450 >gi|194398750|ref|YP_002038492.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae G54] gi|194358417|gb|ACF56865.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae G54] Length = 451 Score = 256 bits (653), Expect = 5e-66, Method: Composition-based stats. Identities = 78/387 (20%), Positives = 147/387 (37%), Gaps = 40/387 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54 ++ Y++QL K D L Q + F + I EP +YR + +F Sbjct: 81 GCQIMHLHYDKQLEFKTDLLHQALKKFAPAGYENYEIRPTIGMQEPKYYRAKLQFQTRKF 140 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----------LRAKL 104 + + ++ Q + + + + + + + + +R + Sbjct: 141 KNQVKAGLYAQNSHYLVELKDCLVQDKETQVIANRLAELLTYHQIPITDERKVLGVRTIM 200 Query: 105 FQIDYLTSQSDQAIVT---LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161 + T Q IVT L +L+ + ++ + A++ + I KT+I Sbjct: 201 VRRARKTGQVQIIIVTNRQLNLTQLVKELVKDFPEVVTVAVNTNTAKTSEI-YGEKTEII 259 Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGN 220 ++ + E + + +F Q N + E V A + L++ YCG Sbjct: 260 WGQESIQEGVL----NYEFSLSPRAFYQLNPEQTEVLYSEAVKALDVSKEDHLIDAYCGV 315 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G A+ + ++I ++E A+ N +N +++E +E Sbjct: 316 GTIGFAFAKKVKTLRGMDIIPEAIEDAKRNAKRMGFDNTHYEAGTAEEIIPRWYKE---- 371 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTT 338 YR + VDPPR+GLDD + + Y ++YISCN +L RDL L Sbjct: 372 --------GYRADALIVDPPRTGLDDKLLDTILTYVPEKMVYISCNVSTLARDLVRLVEV 423 Query: 339 HTIERLALFDQFPYTRHMECGVLLVRK 365 + + + D FP+T E V L++K Sbjct: 424 YDLHYIQSVDMFPHTARTEAVVKLIKK 450 >gi|182684846|ref|YP_001836592.1| RNA methyltransferase [Streptococcus pneumoniae CGSP14] gi|225857490|ref|YP_002739001.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae P1031] gi|303253868|ref|ZP_07339992.1| RNA methyltransferase [Streptococcus pneumoniae BS455] gi|303260797|ref|ZP_07346751.1| RNA methyltransferase, TrmA family protein [Streptococcus pneumoniae SP-BS293] gi|303267661|ref|ZP_07353494.1| RNA methyltransferase, TrmA family protein [Streptococcus pneumoniae BS457] gi|182630180|gb|ACB91128.1| RNA methyltransferase, TrmA family [Streptococcus pneumoniae CGSP14] gi|225725197|gb|ACO21049.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae P1031] gi|302599173|gb|EFL66195.1| RNA methyltransferase [Streptococcus pneumoniae BS455] gi|302638058|gb|EFL68539.1| RNA methyltransferase, TrmA family protein [Streptococcus pneumoniae SP-BS293] gi|302642802|gb|EFL73116.1| RNA methyltransferase, TrmA family protein [Streptococcus pneumoniae BS457] Length = 451 Score = 256 bits (653), Expect = 5e-66, Method: Composition-based stats. Identities = 78/387 (20%), Positives = 147/387 (37%), Gaps = 40/387 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54 ++ Y++QL K D L Q + F + I EP +YR + +F Sbjct: 81 GCQIMHLHYDKQLEFKTDLLHQALKKFAPAGYENYEIRPTIGMQEPKYYRAKLQFQTRKF 140 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----------LRAKL 104 + + ++ Q + + + + + + + + +R + Sbjct: 141 KNQVKAGLYAQNSHYLVELKDCLVQDKETQVIANRLAELLTYHQIPITDERKVLGVRTIM 200 Query: 105 FQIDYLTSQSDQAIVT---LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161 + T Q IVT L +L+ + ++ + A++ + I KT+I Sbjct: 201 VRRARKTGQVQIIIVTNRQLNLTQLVKELVKDFPEVVTVAVNTNTAKTSEI-YGEKTEII 259 Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGN 220 ++ + E + + +F Q N + E V A + L++ YCG Sbjct: 260 WGQESIQEGVL----NYEFSLSPRAFYQLNPEQTEVLYSEAVKALDVDKENHLIDAYCGV 315 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G A+ + ++I ++E A+ N +N +++E +E Sbjct: 316 GTIGFAFAKKVKTLRGMDIIPEAIEDAKRNAKRMGFDNTHYEAGTAEEIIPRWYKE---- 371 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTT 338 YR + VDPPR+GLDD + + Y ++YISCN +L RDL L Sbjct: 372 --------GYRADALIVDPPRTGLDDKLLDTILTYVPEKMVYISCNVSTLARDLVRLVEV 423 Query: 339 HTIERLALFDQFPYTRHMECGVLLVRK 365 + + + D FP+T E V L++K Sbjct: 424 YDLHYIQSVDMFPHTARTEAVVKLIKK 450 >gi|225861693|ref|YP_002743202.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae Taiwan19F-14] gi|298229216|ref|ZP_06962897.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae str. Canada MDR_19F] gi|298255172|ref|ZP_06978758.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae str. Canada MDR_19A] gi|298503634|ref|YP_003725574.1| tRNA (uracil-5-)-methyltransferase [Streptococcus pneumoniae TCH8431/19A] gi|225727633|gb|ACO23484.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae Taiwan19F-14] gi|298239229|gb|ADI70360.1| tRNA (uracil-5-)-methyltransferase [Streptococcus pneumoniae TCH8431/19A] Length = 451 Score = 256 bits (653), Expect = 6e-66, Method: Composition-based stats. Identities = 77/387 (19%), Positives = 147/387 (37%), Gaps = 40/387 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54 ++ Y++QL K D L Q + F + I EP +YR + +F Sbjct: 81 GCQIMHLHYDKQLEFKTDLLHQALKKFAPAGYENYEIRPTIGMQEPKYYRAKLQFQTRKF 140 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----------LRAKL 104 + + ++ Q + + + + + + + + +R + Sbjct: 141 KNQVKAGLYAQNSHYLVELKDCLVQDKETQVIANRLAELLTYHQIPITDERKVLGVRTIM 200 Query: 105 FQIDYLTSQSDQAIVT---LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161 + T Q IVT L +L+ + ++ + A++ + I KT+I Sbjct: 201 VRRARKTGQVQIIIVTNRQLNLTQLVKELVKDFPEVVTVAVNTNTAKTSEI-YGEKTEII 259 Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGN 220 ++ + E + + +F Q N + E V A + L++ YCG Sbjct: 260 WGQESIQEGVL----NYEFSLSPRAFYQLNPEQTEVLYSEAVKALDVDKEDHLIDAYCGV 315 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G A+ + ++I ++E A+ N +N +++E +E Sbjct: 316 GTIGFAFAKKVKTLRGMDIIPEAIEDAKRNAKRMGFDNTHYEAGTAEEIIPRWYKE---- 371 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTT 338 YR + +DPPR+GLDD + + Y ++YISCN +L RDL L Sbjct: 372 --------GYRADALIIDPPRTGLDDKLLDTILTYVPEKMVYISCNVSTLARDLVRLVEV 423 Query: 339 HTIERLALFDQFPYTRHMECGVLLVRK 365 + + + D FP+T E V L++K Sbjct: 424 YDLHYIQSVDMFPHTARTEAVVKLIKK 450 >gi|125718628|ref|YP_001035761.1| RNA methyltransferase [Streptococcus sanguinis SK36] gi|125498545|gb|ABN45211.1| RNA methyltransferase, putative [Streptococcus sanguinis SK36] Length = 456 Score = 256 bits (653), Expect = 6e-66, Method: Composition-based stats. Identities = 78/392 (19%), Positives = 148/392 (37%), Gaps = 46/392 (11%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54 ++ Y++QL K D LRQ + F + I EP++YR + +F Sbjct: 81 GCQIMHLHYDKQLEFKEDLLRQALKKFAPAGYENYEIRPTIGMQEPLYYRAKLQFQTRKF 140 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIE---MMATIRLEPLLRAKLFQIDYL- 110 D++ ++ Q + + + + + ++ + ++ RL K + + Sbjct: 141 KDEVKAGLYAQNSHYLVSLKNCLVQDKVTQQIINKVARLLGKYRLPIYDERKTAGVRTVM 200 Query: 111 ---TSQSDQAIVTLIYHRLLD---------DAWRECAIRLRDALHARKYQIQLIGRANKT 158 ++ Q + + R LD + E + ++ +I +KT Sbjct: 201 IRRARKTGQVQMIFVTGRKLDFSPVVRDLVAEFPELETVAVNYHTSKSSEI----YGDKT 256 Query: 159 KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELY 217 +I + E + + +F Q N + E V A + L++ Y Sbjct: 257 EIIWGEKAIQEGVL----DYEFSLSPRAFYQLNPEQTEVLYGEAVKALDVTKEDHLIDAY 312 Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277 CG G A+ + ++I ++E A+ N +N +++E E Sbjct: 313 CGVGTIGFAFAKRVKSLRGMDIIPEAIEDAKRNAKKMGFDNTLYEAGTAEEIIPRWYAE- 371 Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL 335 YR + VDPPR+GLDD + + A ++Y+SCN +L RDL L Sbjct: 372 -----------GYRADALIVDPPRTGLDDKLLETIVRYAPEKMVYVSCNVSTLARDLVKL 420 Query: 336 STTHTIERLALFDQFPYTRHMECGVLLVRKPS 367 + + + D FP+T E V L ++ S Sbjct: 421 CQVYDVHYIQSVDMFPHTARTEAVVKLSKRNS 452 >gi|332071986|gb|EGI82473.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae GA17570] Length = 462 Score = 256 bits (653), Expect = 6e-66, Method: Composition-based stats. Identities = 78/387 (20%), Positives = 147/387 (37%), Gaps = 40/387 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54 ++ Y++QL K D L Q + F + I EP +YR + +F Sbjct: 81 GCQIMHLHYDKQLEFKTDLLHQALKKFAPAGYENYEIRPTIGMQEPKYYRAKLQFQTRKF 140 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----------LRAKL 104 + + ++ Q + + + + + + + + +R + Sbjct: 141 KNQVKAGLYAQNSHYLVELKDCLVQDKETQVIANRLAELLTYHQIPITDERKVLGVRTIM 200 Query: 105 FQIDYLTSQSDQAIVT---LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161 + T Q IVT L +L+ + ++ + A++ + I KT+I Sbjct: 201 VRRARKTGQVQIIIVTNRQLNLTQLVKELVKDFPEVVTVAVNTNTAKTSEI-YGEKTEII 259 Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGN 220 ++ + E + + +F Q N + E V A + L++ YCG Sbjct: 260 WGQESIQEGVL----NYEFSLSPRAFYQLNPEQTEVLYSEAVKALDVDKEDHLIDAYCGV 315 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G A+ + ++I ++E A+ N +N +++E +E Sbjct: 316 GTIGFAFAKKVKTLRGMDIIPEAIEDAKRNAKRMGFDNTHYEAGTAEEIIPRWYKE---- 371 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTT 338 YR + VDPPR+GLDD + + Y ++YISCN +L RDL L Sbjct: 372 --------GYRADALIVDPPRTGLDDKLLDTILTYVPEKMVYISCNVSTLARDLVRLVEV 423 Query: 339 HTIERLALFDQFPYTRHMECGVLLVRK 365 + + + D FP+T E V L++K Sbjct: 424 YDLHYIQSVDMFPHTARTEAVVKLIKK 450 >gi|168490112|ref|ZP_02714311.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae SP195] gi|183571510|gb|EDT92038.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae SP195] Length = 451 Score = 256 bits (653), Expect = 6e-66, Method: Composition-based stats. Identities = 78/387 (20%), Positives = 147/387 (37%), Gaps = 40/387 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54 ++ Y++QL K D L Q + F + I EP +YR + +F Sbjct: 81 GCQIMHLHYDKQLEFKTDLLHQALKKFAPAGYENYEIRPTIGMQEPKYYRAKLQFQTRKF 140 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----------LRAKL 104 + + ++ Q + + + + + + + + +R + Sbjct: 141 KNQVKAGLYAQNSHYLVELKDCLVQDKETQVIANRLAELLTYHQIPITDERKVLGVRTIM 200 Query: 105 FQIDYLTSQSDQAIVT---LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161 + T Q IVT L +L+ + ++ + A++ + I KT+I Sbjct: 201 VRRARKTGQVQIIIVTNRQLNLTQLVKELVKDFPEVVTVAVNTNTAKTSEI-YGEKTEII 259 Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGN 220 ++ + E + + +F Q N + E V A + L++ YCG Sbjct: 260 WGQESIQEGVL----NYEFSLSPRAFYQLNPEQTEVLYSEAVKALDVDKEDHLIDAYCGV 315 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G A+ + ++I ++E A+ N +N +++E +E Sbjct: 316 GTIGFAFAKKVKTLRGMDIIPEAIEDAKRNAKRMGFDNTHYEAGTAEEIIPRWYKE---- 371 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTT 338 YR + VDPPR+GLDD + + Y ++YISCN +L RDL L Sbjct: 372 --------GYRADALIVDPPRTGLDDKLLDTILTYVPEKMVYISCNVSTLARDLVRLVEV 423 Query: 339 HTIERLALFDQFPYTRHMECGVLLVRK 365 + + + D FP+T E V L++K Sbjct: 424 YDLHYIQSVDMFPHTARTEAVVKLIKK 450 >gi|149012517|ref|ZP_01833548.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae SP19-BS75] gi|147763573|gb|EDK70509.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae SP19-BS75] Length = 453 Score = 256 bits (653), Expect = 6e-66, Method: Composition-based stats. Identities = 78/387 (20%), Positives = 147/387 (37%), Gaps = 40/387 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54 ++ Y++QL K D L Q + F + I EP +YR + +F Sbjct: 81 GCQIMHLHYDKQLEFKTDLLHQALKKFAPAGYENYEIRPTIGMQEPKYYRAKLQFQTRKF 140 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----------LRAKL 104 + + ++ Q + + + + + + + + +R + Sbjct: 141 KNQVKEGLYAQNSHYLVELKDCLVQDKETQVIANRLAELLTYHQIPITDERKVLGVRTIM 200 Query: 105 FQIDYLTSQSDQAIVT---LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161 + T Q IVT L +L+ + ++ + A++ + I KT+I Sbjct: 201 VRRARKTGQVQIIIVTNRQLNLTQLVKELVKDFPEVVTVAVNTNTAKTSEI-YGEKTEII 259 Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGN 220 ++ + E + + +F Q N + E V A + L++ YCG Sbjct: 260 WGQESIQEGVL----NYEFSLSPRAFYQLNPEQTEVLYSEAVKALDVDKEDHLIDAYCGV 315 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G A+ + ++I ++E A+ N +N +++E +E Sbjct: 316 GTIGFAFAKKVKTLRGMDIIPEAIEDAKRNAKRMGFDNTHYEAGTAEEIIPRWYKE---- 371 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTT 338 YR + VDPPR+GLDD + + Y ++YISCN +L RDL L Sbjct: 372 --------GYRADALIVDPPRTGLDDKLLDTILTYVPEKMVYISCNVSTLARDLVRLVEV 423 Query: 339 HTIERLALFDQFPYTRHMECGVLLVRK 365 + + + D FP+T E V L++K Sbjct: 424 YDLHYIQSVDMFPHTARTEAVVKLIKK 450 >gi|262282787|ref|ZP_06060555.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus sp. 2_1_36FAA] gi|262262078|gb|EEY80776.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus sp. 2_1_36FAA] Length = 454 Score = 256 bits (653), Expect = 6e-66, Method: Composition-based stats. Identities = 78/392 (19%), Positives = 149/392 (38%), Gaps = 46/392 (11%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54 ++ Y++QL K D LRQ + F + I EP++YR + +F Sbjct: 79 GCQIMHLHYDKQLEFKEDLLRQALKKFAPAGYENYEIRPTIGMQEPLYYRAKLQFQTRKF 138 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIE---MMATIRLEPLLRAKLFQIDYL- 110 D++ ++ Q + + + + + ++ + ++ RL K + + Sbjct: 139 KDEVKAGLYAQNSHYLVSLKNCLVQDKVTQQIINKVARLLGKYRLPIYDERKTAGVRTVM 198 Query: 111 ---TSQSDQAIVTLIYHRLLD---------DAWRECAIRLRDALHARKYQIQLIGRANKT 158 ++ Q + + R LD + E + ++ +I +KT Sbjct: 199 IRRARKTGQVQMIFVTGRKLDFSPVVRDLVAEFPELETIAVNYHTSKSSEI----YGDKT 254 Query: 159 KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELY 217 +I + E + + +F Q N + E V A + L++ Y Sbjct: 255 EIIWGEKAIQEGVL----DYEFSLSPRAFYQLNPEQTEVLYGEAVKALDVTKEDHLIDAY 310 Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277 CG G A+ + ++I ++E A+ N +N +++E E Sbjct: 311 CGVGTIGFAFAKRVKSLRGMDIIPEAIEDAKRNAKRMGFDNTLYEAGTAEEIIPRWYTE- 369 Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL 335 +R + VDPPR+GLDD + + A ++Y+SCN +L RDL L Sbjct: 370 -----------GFRADALIVDPPRTGLDDKLLETIVRYAPEKMVYVSCNVSTLARDLVKL 418 Query: 336 STTHTIERLALFDQFPYTRHMECGVLLVRKPS 367 S + + + D FP+T E V L ++ S Sbjct: 419 SQVYDVHYIQSVDMFPHTARTEAVVKLSKRDS 450 >gi|300214218|gb|ADJ78634.1| tRNA (Uracil-5-)-methyltransferase [Lactobacillus salivarius CECT 5713] Length = 459 Score = 255 bits (652), Expect = 6e-66, Method: Composition-based stats. Identities = 74/381 (19%), Positives = 152/381 (39%), Gaps = 40/381 (10%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWH-DGDDLYHI 61 Y +QL K D +RQ + F+ N + + P YR +A+F + G+ + Sbjct: 94 YSKQLEFKTDVIRQSLEKFKPTNYENMELRPTLGMEVPYEYRNKAQFPVRKVKGNKVIAG 153 Query: 62 MFDQQTKERMRIDYF---MPGSLLINALMIEMMATIRLE--------PLLRAKLFQIDYL 110 ++ + + + F +P ++ I +++++ + +L+ + + Sbjct: 154 LYKPNSHILVDLPTFKTQIPLTMEIMRKIVKLLEKWNISIYDERRNSGILKTVVIRQ--- 210 Query: 111 TSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY---V 167 T +++Q + + R + + A +Q I + + + + + Sbjct: 211 TLKTEQVQIVFVTARNNCANLNQVVNEIMAAYPQIVSVMQNINPSRSSLVWGEETFKLAG 270 Query: 168 DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLV 226 +RL + + SF Q N + V A + + L++ YCG G L Sbjct: 271 TDRLLEQLGDIKFELSARSFFQLNPSQTEVLYTEVKKALDLKEDETLVDAYCGVGTIGLF 330 Query: 227 LARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDID 286 ++ V ++I ++E A+ N + N+ +++ + Sbjct: 331 VSPDAKEVRGMDIIPEAIEDAKKNAELSGRKNIHYEVGKAEDLFAKWTK----------- 379 Query: 287 IHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILSTTHTIERL 344 +++ + VDPPR+GLDD + + Y +Y+SCNP +L RDL L + +E + Sbjct: 380 -NNFVPDALVVDPPRTGLDDKMIETILKYRPNKFVYVSCNPSTLARDLVKLVKIYNVEYI 438 Query: 345 ALFDQFPYTRHMECGVLLVRK 365 D FP T +E V L +K Sbjct: 439 QSVDMFPQTARVEAVVKLSKK 459 >gi|256846121|ref|ZP_05551579.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Fusobacterium sp. 3_1_36A2] gi|256719680|gb|EEU33235.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Fusobacterium sp. 3_1_36A2] Length = 462 Score = 255 bits (652), Expect = 7e-66, Method: Composition-based stats. Identities = 76/384 (19%), Positives = 162/384 (42%), Gaps = 33/384 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAF-QVPNLQIF----RSEPIHYRMRAEFHIWHDGD 56 + +YE QL K + ++M +P++Q+ + +YR + + Sbjct: 92 GCDFAMLKYESQLKYKRLMVEEVMKKIAGLPDIQVADVLASEDIYNYRNKIIEPFSVYDN 151 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-------LRAKLFQIDY 109 + F +++ E +D + S L N ++ E+ + + + L I Sbjct: 152 KIITGFFKRKSHEVFEVDENILNSKLGNRIIKELKKILNKNKISIYNENTHKGLLRNIMI 211 Query: 110 LTSQSDQAIVTLIYHR-LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR---- 164 T+ +++A+V LI + + + ++ +LR+ + K I + + KT + Sbjct: 212 RTNSNNEAMVVLIINSNKITENIKKLLFKLRENIEEIK-SIYISLNSKKTNTVIGEKNIL 270 Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNF 223 Y + + + + SF Q N + ++ I +++ Y G G Sbjct: 271 IYGVKSIKENINGIEFHISPTSFFQINVKQAKRLYNIAISFFDNIDDKYIVDAYSGTGTI 330 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 +++A+ +V A+EI K + E N + N++ + + ++ + Sbjct: 331 GMIMAKKTKKVYAIEIVKSASEDGEKTAKENGIKNIEFINGAVEK------------EII 378 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDLSILST-THTI 341 + ++ + TI DPPR GL+ + + V ++YISCNP + RD+ + S + + Sbjct: 379 KLINNNQKIDTIIFDPPRKGLEASIIDTVAELNLKVVYISCNPSTFARDVKLFSERGYVL 438 Query: 342 ERLALFDQFPYTRHMECGVLLVRK 365 ++L D FP T H+EC L+V++ Sbjct: 439 KKLQAVDMFPQTSHIECVGLIVKE 462 >gi|229830195|ref|ZP_04456264.1| hypothetical protein GCWU000342_02304 [Shuttleworthia satelles DSM 14600] gi|229791493|gb|EEP27607.1| hypothetical protein GCWU000342_02304 [Shuttleworthia satelles DSM 14600] Length = 394 Score = 255 bits (652), Expect = 7e-66, Method: Composition-based stats. Identities = 83/389 (21%), Positives = 150/389 (38%), Gaps = 42/389 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHD-GDDLYH 60 ++ Y++QL K + ++ A+ P + + P +YR +A + + Sbjct: 19 GCSMQGLPYKEQLKRKEKEVADLLKAYGRPEPILGMNFPYYYRNKAHAVLGGSLKGKIVC 78 Query: 61 IMFDQQTKERMRIDYFMP----GSLLI---NALMIEMMATIRLEPLLRAKLFQI-DYLTS 112 +++ + + ID LI L+ E R L I T+ Sbjct: 79 GTYERGSHRIVNIDRCQIEDRECDQLIASVRELLPSFKVEPYNEDTGRGCLRHIIARRTA 138 Query: 113 QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGR-------ANKTKICLDRD 165 Q ++ L+ + + ++ LR A +Q I ++ ++ Sbjct: 139 DGGQIMLILVTAQAAFPSRKKFVSALRKAHPNITTILQNINGQSTSVVLGDRYEVLYGPG 198 Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNFS 224 Y+++RL +R +F Q N+ + + A + +L+ YCG G Sbjct: 199 YIEDRLM----GARFRISPGAFYQVNSQQTKKLYRLAVDMADLKGKERVLDTYCGTGTIG 254 Query: 225 LV----LARHFDR---VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277 + LAR ++ VE +V AR N N + + V + F M E Sbjct: 255 IAAAVDLARRTKEPMELIGVECNPAAVRDARINARVNGLRQARFVVADAGAF---MLAEA 311 Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSIL 335 E R +F+DPPR+G + + ++ I+YISC+P + RDL L Sbjct: 312 EAGR---------SCDLVFMDPPRAGSTEEFLLALRRLVPEKIVYISCDPKTQARDLKYL 362 Query: 336 STTHTIERLALFDQFPYTRHMECGVLLVR 364 + + I R+A D FP+T +E VLL + Sbjct: 363 DSAYAIRRIAPVDMFPFTDGIENVVLLEK 391 >gi|312875412|ref|ZP_07735416.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners LEAF 2053A-b] gi|311089075|gb|EFQ47515.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners LEAF 2053A-b] Length = 450 Score = 255 bits (652), Expect = 7e-66, Method: Composition-based stats. Identities = 83/387 (21%), Positives = 151/387 (39%), Gaps = 39/387 (10%) Query: 3 GTLLIDQYEQQLAEKVDRLRQMMLAF---QVPNLQIFRSEPIHYRMRAEFHIWHDGDDLY 59 L +YE+QL K ++ ++ + N + E YR +A+ + L Sbjct: 80 AALAHMKYERQLEFKKQQVVNLLEKVHLNKKVNDCLASPESTAYRNKAQVPVRMVNGQLE 139 Query: 60 HIMFDQQTKERMRIDYFMPGSLLINALMIEMMA-----------TIRLEPLLRAKLFQID 108 F + + + + + F+ I+A ++ + I+ +R + Sbjct: 140 VGFFRKHSHDLVPMTDFLTTDKKIDAAVVAVRDILRKFNVPAYDEIKHNGEVRYLEIRRS 199 Query: 109 YLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD-RDYV 167 Q +V L D + L + + L +KT + L ++Y+ Sbjct: 200 KANGQLMIVLVCLHKSFNNLDTVVQAIQSLDNVAC-----VILNHNPHKTNVILGEKEYI 254 Query: 168 ---DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNF 223 + + L ++ SF Q N+ + + + D+ ++ Y G G Sbjct: 255 LAGNGEIVDKIGDLSFKISSQSFFQINSLQTPRLYNLAIQKAQLTANDVVIDAYSGIGTI 314 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 L +A+H +VL VEI + +V+ A+ N N +NN + ++E E Sbjct: 315 GLSVAKHVKKVLGVEIVRDAVKDAKKNAILNGINNAEYFEGKAEELMPQWANE------- 367 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGM--VQAYPHILYISCNPDSLCRDLSIL-STTHT 340 + IFVDPPR GL D + + I+YISCNP ++ RDL + + + Sbjct: 368 -----GLKTDVIFVDPPRKGLTDTFIKAAVATSPKKIVYISCNPATMIRDLQVFQAAGYD 422 Query: 341 IERLALFDQFPYTRHMECGVLLVRKPS 367 + + D FP T H+E VLL + S Sbjct: 423 FDCIDPVDMFPQTPHVETIVLLSKLGS 449 >gi|227508696|ref|ZP_03938745.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227191830|gb|EEI71897.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 472 Score = 255 bits (652), Expect = 7e-66, Method: Composition-based stats. Identities = 76/381 (19%), Positives = 145/381 (38%), Gaps = 41/381 (10%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPN-------LQIFRSEPIHYRMRAEFHIWHDGDDLYHIM 62 Y +QL K D ++ + ++ I +PIHYR +A F I +DG + + Sbjct: 108 YPKQLEFKRDVIKDSLEKYKPAGYRKYKLLPTIGMDDPIHYRNKATFQIRNDGQKVIAGL 167 Query: 63 FDQQTKERMR-----------IDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLT 111 + ++ + + +I+ L I + + +++ + + Sbjct: 168 YKHRSHTVVDLKTSALQYPLTMKVMRAVVEMIDDLGIPVYDEEKNAGIIKTVVVR---AA 224 Query: 112 SQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVD--- 168 + +D+A VT I + R+ L +Q + KT + + + Sbjct: 225 TATDEAQVTFITQSKKLLKKHQLLERIDHDLPEVVSVMQNVNPG-KTSLVWGEETIHLAG 283 Query: 169 -ERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELYCGNGNFSLV 226 +++T L + +F Q N + + + A + L++ Y G G L Sbjct: 284 KDKITEVLNNLSFDLSARAFLQVNPEMTAVLYQEAFKALELSGKEKLVDAYSGVGTIGLS 343 Query: 227 LARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDID 286 +AR V ++ K +V+ A N N + N +++ + Sbjct: 344 VARQVREVRGMDTIKDAVDDANANAIKNGIVNALYEVGEAEKLLPLWIED---------- 393 Query: 287 IHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTIERL 344 + + VDPPR+GL D+ + + +YISCNP +L RDL L+ + +E + Sbjct: 394 --GWNPTAMIVDPPRTGLADSLIDTILDITPKKFVYISCNPSTLARDLVKLTRKYNVEYI 451 Query: 345 ALFDQFPYTRHMECGVLLVRK 365 D P T EC V +K Sbjct: 452 QSVDLMPQTSRCECVVKFKKK 472 >gi|322807179|emb|CBZ04753.1| RNA methyltransferase, TrmA family [Clostridium botulinum H04402 065] Length = 453 Score = 255 bits (652), Expect = 7e-66, Method: Composition-based stats. Identities = 82/391 (20%), Positives = 146/391 (37%), Gaps = 47/391 (12%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIF----RSEPIHYRMRAEFHIW--HDG 55 + YE+QL K ++L ++ + ++ E YR + EF G Sbjct: 79 GCSTQYIPYEKQLQIKEEQLLKLFKSKEIKGFDFLGVEKSPEEYEYRNKMEFTFGDMEKG 138 Query: 56 DDLYHIMFDQQTK-ERMRIDYFMPGSLLI-----------NALMIEMMATIRLEPLLRAK 103 DL M + + +D N + + E LR Sbjct: 139 GDLTLGMHVKNRNFSIVTVDNCEIVDRDFRNILTTVVNYFNEKRLPKYRVMSHEGFLRNL 198 Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDA------WRECAIRLRDALHARKYQIQLIGRANK 157 + + T + IVT EC ++ LH + + + +K Sbjct: 199 VIRKAKNTGEILVNIVTTSQMEFDFKEIVDMLLKVECKGEIKGILHTINDTLSDVVQVDK 258 Query: 158 TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-EL 216 +I RDY+ E L L ++ +F Q N+ + V ++ +L Sbjct: 259 LEILYGRDYIIEELL----GLKFKIAPEAFFQTNSKGAEKLYSIVKDFLGDASSKVVFDL 314 Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276 YCG G ++A +V+ VE+ + +V+AA N N +NN + + + + +++ Sbjct: 315 YCGTGTIGQIVAPKAKKVIGVELIEEAVKAANENAKLNGLNNCEFIAGDVAKVIKDVKQ- 373 Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSI 334 + I +DPPR G+ + V + I+Y+SCNP +L DL Sbjct: 374 --------------KPDIIILDPPRPGVHPVALEYVVKFQPKEIIYVSCNPKTLVDDLKY 419 Query: 335 L-STTHTIERLALFDQFPYTRHMECGVLLVR 364 L + +E++ D FP+T H EC + R Sbjct: 420 LIDNGYKLEKVKGMDMFPHTPHTECVTRIER 450 >gi|331001672|ref|ZP_08325195.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lachnospiraceae oral taxon 107 str. F0167] gi|330413393|gb|EGG92760.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lachnospiraceae oral taxon 107 str. F0167] Length = 394 Score = 255 bits (652), Expect = 7e-66, Method: Composition-based stats. Identities = 80/384 (20%), Positives = 150/384 (39%), Gaps = 35/384 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHI 61 + Y + + EK++ +++ + + I S P HYR + + + Sbjct: 26 GCDYINSPYNKHVKEKLELANKLIKKYGKFDGIISMSNPYHYRNKVSAVFGFENKKIIAG 85 Query: 62 MFDQQTKERMRIDYFMP----GSLLINALM-------IEMMATIRLEPLLRAKLFQIDYL 110 +++ + + + S +I + I+ LR L ++ Sbjct: 86 TYEKNSHRVVDTKSCLIEDKKASAIIQTIKKMCISFKIKAYDEDSGFGFLRHVLIRVGK- 144 Query: 111 TSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD---YV 167 +S Q +V L+ ++ LR +Q + N + + DR+ Y Sbjct: 145 --KSGQIMVVLVTSNVIFPNKNAFIKVLRGEHPEITTIVQNVNNKNTSMVLGDREIVMYG 202 Query: 168 DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSL 225 +T L ++ SF Q N + + G++GD LL+ Y G G L Sbjct: 203 KGYITDELCGLTFKISPKSFYQVNREQTEKLYSQAIE-YAGLEGDEVLLDAYSGIGTIGL 261 Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285 + ++ V++VE+ K + + A N N++ NVK + F D+ Sbjct: 262 IASKSVKEVISVELNKDAHKDAITNAKINNIKNVKFYNADATAFIN------------DL 309 Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILS-TTHTIE 342 + + +DPPR+G + + V ++Y+SCNP++L RDL + E Sbjct: 310 AAAGEKIDVVILDPPRTGSTEEFIAAVGRLKPKKVVYVSCNPETLARDLESFKRQRYGFE 369 Query: 343 RLALFDQFPYTRHMECGVLLVRKP 366 + +FD F +TRH E VL+ RK Sbjct: 370 KGMVFDCFCHTRHAEVVVLMSRKD 393 >gi|225859667|ref|YP_002741177.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae 70585] gi|225721520|gb|ACO17374.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae 70585] Length = 451 Score = 255 bits (652), Expect = 8e-66, Method: Composition-based stats. Identities = 75/386 (19%), Positives = 138/386 (35%), Gaps = 38/386 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54 ++ Y++QL K D L Q + F + I EP +YR + +F Sbjct: 81 GCQIMHLHYDKQLEFKTDLLHQALKKFAPAGYENYEIRPTIGMQEPKYYRAKLQFQTRKF 140 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----------LRAKL 104 + + ++ Q + + + + + + + + +R + Sbjct: 141 KNQVKAGLYAQNSHYLVELKDCLVQDKETQVIANRLAELLTYHQIPITDERKVLGVRTIM 200 Query: 105 FQIDYLTSQSDQAIVTL--IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162 + T Q IVT + L + + KT+I Sbjct: 201 VRRARKTGQVQIIIVTNRQLNLTQLVKELVKGFPEVVTVAVNTNTAKTSEIYGEKTEIIW 260 Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGNG 221 ++ + E + + +F Q N + E V A + L++ YCG G Sbjct: 261 GQESIQEGVL----DYEFSLSPRAFYQLNPEQTEVLYSEVVKALDVSKEDHLIDAYCGVG 316 Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281 A+ + ++I ++E A+ N +N +++E +E Sbjct: 317 TIGFAFAKKVKTLRGMDIIPEAIEDAKRNAKRMGFDNTHYEAGTAEEIIPRWYKE----- 371 Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTTH 339 YR + VDPPR+GLDD + + Y ++YISCN +L RDL L + Sbjct: 372 -------GYRADALIVDPPRTGLDDKLLDTILTYVPEKMVYISCNVSTLARDLVRLVEVY 424 Query: 340 TIERLALFDQFPYTRHMECGVLLVRK 365 + + D FP+T E V L++K Sbjct: 425 DLHYIQSVDMFPHTARTEAVVKLIKK 450 >gi|325832711|ref|ZP_08165474.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Eggerthella sp. HGA1] gi|325485850|gb|EGC88311.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Eggerthella sp. HGA1] Length = 525 Score = 255 bits (651), Expect = 8e-66, Method: Composition-based stats. Identities = 84/411 (20%), Positives = 137/411 (33%), Gaps = 68/411 (16%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPN---LQIFRSEPIHYRMRAEFHI-------------- 51 Y QQLA K R+ ++ + + EP YR + Sbjct: 37 PYAQQLASKDTRVAELFADVADASALRPILGMDEPYCYRNKVVSPYAPGRKLQGSANARA 96 Query: 52 --------WHDGDDLYH-------IMFDQQTKERMRIDYFMPGSL-----------LINA 85 DG M+ + + D + + L+ Sbjct: 97 GKGRDARGGRDGKRAQKPRREILCGMYAAGSHRIVPTDGCLIENEEAKRIIRTVRDLMPR 156 Query: 86 LMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHAR 145 IE LR + ++ + S + +VTL+ + A R L Sbjct: 157 FGIEPYREDSGTGFLRHAVVRVGH---TSGEILVTLVTNGRAFPASRAFCRELVRRCPRI 213 Query: 146 KYQIQLIGRANKTKICLDRD----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEW 201 +Q + +T + L Y + L +R SF Q NA + E Sbjct: 214 TSVVQNVN-ERQTNVILGEREQTLYGPGFILDKLCGLSFRISSQSFYQVNAVQTEVLYER 272 Query: 202 VLA-ATKGIQGDLLELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAARYNIAANHVNNV 259 + A ++ YCG G LV A+ +V+ V+ +V AR N N V N Sbjct: 273 AIDLAGFTGSETAIDAYCGTGTIGLVAAKRGARQVIGVDTVASAVRDARENAKHNGVENA 332 Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPH 317 + + F + + + +DPPR+G + + A Sbjct: 333 RFAVGDAGAFMR------------ERAAAGDAVDVLLMDPPRAGSSEEFLAAAVTLAPRR 380 Query: 318 ILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRKPS 367 I+YISCNP + RDL+ L + + + D FP+T H+E LL RK + Sbjct: 381 IVYISCNPTTQVRDLAFLRQRGYAVRTVQPVDMFPHTDHIETVALLSRKSA 431 >gi|332362833|gb|EGJ40626.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis SK49] Length = 456 Score = 255 bits (651), Expect = 9e-66, Method: Composition-based stats. Identities = 78/392 (19%), Positives = 148/392 (37%), Gaps = 46/392 (11%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54 ++ Y++QL K D LRQ + F + I EP++YR + +F Sbjct: 81 GCQIMHLHYDKQLEFKEDLLRQALKKFAPAGYENYEIRPTIGMQEPLYYRAKLQFQTRKF 140 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIE---MMATIRLEPLLRAKLFQIDYL- 110 D++ ++ Q + + + + + ++ + ++ RL K + + Sbjct: 141 KDEVKAGLYAQNSHYLVSLKNCLVQDKVTQQIINKVARLLGKYRLPIYDERKTAGVRTVM 200 Query: 111 ---TSQSDQAIVTLIYHRLLD---------DAWRECAIRLRDALHARKYQIQLIGRANKT 158 ++ Q + + R LD + E + ++ +I +KT Sbjct: 201 IRRARKTGQVQMIFVTGRKLDFSPVVRDLVAEFPELETVAVNYHTSKSSEI----YGDKT 256 Query: 159 KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELY 217 +I + E + + +F Q N + E V A + L++ Y Sbjct: 257 EIIWGEKAIQEGVL----DYEFSLSPRAFYQLNPEQTEVLYGEAVKALDVTKEDHLIDAY 312 Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277 CG G A+ + ++I ++E A+ N +N +++E E Sbjct: 313 CGVGTIGFAFAKRVKSLRGMDIIPEAIEDAKRNAKKMGFDNTLYEAGTAEEIIPRWYTE- 371 Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL 335 YR + VDPPR+GLDD + + A ++Y+SCN +L RDL L Sbjct: 372 -----------GYRADALIVDPPRTGLDDKLLETIVRYAPEKMVYVSCNVSTLARDLVKL 420 Query: 336 STTHTIERLALFDQFPYTRHMECGVLLVRKPS 367 + + + D FP+T E V L ++ S Sbjct: 421 CQVYDVHYIQSVDMFPHTARTEAVVKLSKRNS 452 >gi|327470379|gb|EGF15835.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis SK330] Length = 463 Score = 255 bits (651), Expect = 9e-66, Method: Composition-based stats. Identities = 80/392 (20%), Positives = 145/392 (36%), Gaps = 46/392 (11%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54 ++ Y++QL K D LRQ + F + I EP++YR + +F Sbjct: 81 GCQIMHLHYDKQLEFKEDLLRQALKKFAPAGYENYEIRPTIGMQEPLYYRAKLQFQTRKF 140 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----------LRAKL 104 D++ ++ Q + + + + + ++ ++ + L +R + Sbjct: 141 KDEVKAGLYAQNSHYLVSLKNCLVQDKVTQKIINKVARLLGKYRLPIYDERKNSGVRTVM 200 Query: 105 FQIDYLTSQSDQAIVTLIY------HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKT 158 + T Q VT R L + E + ++ +I +KT Sbjct: 201 IRRARKTGQVQMIFVTGRKLDFSPVVRDLVAEFPELETVAVNYHTSKSSEI----YGDKT 256 Query: 159 KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELY 217 +I + + E + + +F Q N + E V A + L++ Y Sbjct: 257 EIIWGEEAIQEGVL----DYEFSLSPRAFYQLNPEQTEVLYGEAVKALDVTEEDHLIDAY 312 Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277 CG G A+ + ++I ++E A+ N N +++E E Sbjct: 313 CGVGTIGFAFAKRVKSLRGMDIIPEAIEDAKRNAKRMGFTNTLYEAGTAEEIIPRWYAE- 371 Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL 335 YR + VDPPR GLDD + + A ++Y+SCN +L RDL L Sbjct: 372 -----------GYRANALIVDPPRIGLDDKLLETIVRYAPEKMVYVSCNVSTLARDLVKL 420 Query: 336 STTHTIERLALFDQFPYTRHMECGVLLVRKPS 367 + + + D FP+T E V L +K S Sbjct: 421 CQVYDVHYIQSVDMFPHTARTEAVVKLSKKDS 452 >gi|257437892|ref|ZP_05613647.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Faecalibacterium prausnitzii A2-165] gi|257199552|gb|EEU97836.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Faecalibacterium prausnitzii A2-165] Length = 374 Score = 255 bits (651), Expect = 9e-66, Method: Composition-based stats. Identities = 75/384 (19%), Positives = 142/384 (36%), Gaps = 40/384 (10%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRA-EFHIWHDGDDLYHIMF 63 +L Y +QL +K +R+++ + P HYR + G L ++ Sbjct: 1 MLGLDYAEQLKQKEAAVRKLVGKYGPVAPIRGAENPCHYRNKVISTFAAGPGGKLVSGIY 60 Query: 64 DQQTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKLFQIDYLTS 112 T + + ++ + +++ +M + A LLR L + ++ Sbjct: 61 AAGTHKVLPVESCLLQDEVLDTVMQAVRAAASTCRYQPYNEDKGTGLLRHCLLRRGVVSG 120 Query: 113 QSDQAIVTL--------IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR 164 Q +VT + R L + + + + + + + K+ + Sbjct: 121 QVMVVLVTAQPVLPGAKNFVRALLAEAEKRHVPVTTVVQNYNPRRTSVVLGEEEKVLYGK 180 Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNF 223 ++ + L Y SF Q N + + A + ++ L+ YCG G Sbjct: 181 GFILDTLCGK----TYALSPRSFYQINHDQTEVLYGLAVEAARLTGKEVVLDAYCGIGTI 236 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 L + +V+ VE+ + +V A N N V N + + + + Sbjct: 237 GLTASGRAKQVVGVELNRDAVRDAIGNARHNDVKNARFFAADATQ------------WIT 284 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSIL-STTHT 340 + R IF+DPPR G + V A ++Y+SCNP+++ RDL++L + + Sbjct: 285 EAAAAGQRADVIFMDPPREGSTPQFIESVARMAPKRVVYVSCNPETMARDLALLTAKGYR 344 Query: 341 IERLALFDQFPYTRHMECGVLLVR 364 E D FP T H E L R Sbjct: 345 AEGFTPVDLFPQTAHCEVVCALTR 368 >gi|332362207|gb|EGJ40007.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis SK1056] Length = 456 Score = 255 bits (651), Expect = 9e-66, Method: Composition-based stats. Identities = 80/392 (20%), Positives = 147/392 (37%), Gaps = 46/392 (11%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54 ++ Y++QL K D LRQ + F + I EP++YR + +F Sbjct: 81 GCQIMHLHYDKQLEFKEDLLRQALKKFAPAGYENYEIRPTIGMHEPLYYRAKLQFQTRKF 140 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATI----------RLEPLLRAKL 104 D++ ++ Q + + + + + ++ ++ + R +R + Sbjct: 141 KDEVKAGLYAQNSHYLVSLKNCLVQDKVTQQIINKVARLLGKYRLPIYDERKNAGVRTVM 200 Query: 105 FQIDYLTSQSDQAIVTLIY------HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKT 158 + T Q VT R L + E + ++ +I +KT Sbjct: 201 IRRARKTGQVQMIFVTGRKLDFSPVVRDLVAEFPELETVAVNYHTSKSSEI----YGDKT 256 Query: 159 KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELY 217 +I + E + + +F Q N + E V A + L++ Y Sbjct: 257 EIIWGEKAIQEGVL----DYEFSLSPRAFYQLNPEQTEVLYGEAVKALDVTREDHLIDAY 312 Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277 CG G A+ + ++I ++E A+ N +N +++E E Sbjct: 313 CGVGTIGFSFAKRVKSLRGMDIIPEAIEDAKRNAKRMGFDNTLYEAGTAEEIIPRWYAE- 371 Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL 335 YR + VDPPR+GLDD + + A ++Y+SCN +L RDL L Sbjct: 372 -----------GYRANALIVDPPRTGLDDKLLETIVHYAPEKMVYVSCNVSTLARDLVKL 420 Query: 336 STTHTIERLALFDQFPYTRHMECGVLLVRKPS 367 S + + + D FP+T E V L ++ S Sbjct: 421 SKVYDVRYIQSVDMFPHTARTEAVVKLSKRDS 452 >gi|322385946|ref|ZP_08059586.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus cristatus ATCC 51100] gi|321269929|gb|EFX52849.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus cristatus ATCC 51100] Length = 452 Score = 255 bits (651), Expect = 1e-65, Method: Composition-based stats. Identities = 81/391 (20%), Positives = 149/391 (38%), Gaps = 46/391 (11%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54 ++ Y++QL K D LRQ + F + I EP++YR + +F Sbjct: 81 GCQIMHLHYDKQLEFKEDLLRQALKKFAPAGYENYEIRPTIGMQEPLYYRAKLQFQTRKF 140 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----------LRAKL 104 D++ ++ Q + + + + + A++ ++ + L +R + Sbjct: 141 KDEVKAGLYAQNSHYLVSLKNCLVQDKVTQAIVNKVARLLGKYRLPIYDERKTTGVRTVM 200 Query: 105 FQIDYLTSQSDQAIVT------LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKT 158 + T Q VT + R L + E + ++ +I +KT Sbjct: 201 IRRARKTGQVQMIFVTGRKLDFSLVVRDLVAEFPELETVAVNYHTSKSSEI----YGDKT 256 Query: 159 KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELY 217 +I + + E + + +F Q N + E V A + L++ Y Sbjct: 257 EIIWGEEAIQEGVL----DYEFSLSPRAFYQLNPEQTEVLYGEAVKALDVTEEDHLIDAY 312 Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277 CG G A+ + ++I ++E A+ N +N +++E E Sbjct: 313 CGVGTIGFAFAKRVKSLRGMDIIPEAIEDAKRNAKRMGFDNTLYEAGTAEEIIPRWYAE- 371 Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL 335 YR + VDPPR+GLDD + + A ++Y+SCN +L RDL L Sbjct: 372 -----------GYRANALIVDPPRTGLDDKLLETIVRYAPEKMVYVSCNVSTLARDLVKL 420 Query: 336 STTHTIERLALFDQFPYTRHMECGVLLVRKP 366 + + + D FP+T E V LV+K Sbjct: 421 CQVYDVHYIQSVDMFPHTARTEAVVKLVKKD 451 >gi|296132411|ref|YP_003639658.1| RNA methyltransferase, TrmA family [Thermincola sp. JR] gi|296030989|gb|ADG81757.1| RNA methyltransferase, TrmA family [Thermincola potens JR] Length = 457 Score = 255 bits (651), Expect = 1e-65, Method: Composition-based stats. Identities = 79/389 (20%), Positives = 145/389 (37%), Gaps = 39/389 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56 L Y QLA K + + + I P YR +A F + D Sbjct: 85 GSHLQHISYSAQLAFKQKVVADAVQRIGKLGDVPVHFPIGMEMPWRYRNKAAFQVADDNG 144 Query: 57 DLYHIMFDQQTKERM----------RIDYFMPGSL-LINALMIEMMATIRLEPLLRAKLF 105 + F ++T + + +I F L+N + +LR + Sbjct: 145 RIRLGFFAEETHQVVAAYDCMLLHRQISEFAAVVEMLLNKYKVPAYDWKTHRGVLRHVVI 204 Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDAWRECAIR---LRDALHARKYQIQLIGRANKTKICL 162 + + ++ +VT + A R + + N + Sbjct: 205 RRSWAHNKVMIVLVTTSEKCINLHAMARDLHRNPSVVSVVRNINDGPGRNIFGNSNVVLA 264 Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNG 221 R+ ++++L L + SF Q N + + V + +L+LYCG G Sbjct: 265 GRETIEDKLC----GLTFVISPTSFFQVNPVQTEILYQKVRQYAVETGKETVLDLYCGIG 320 Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281 +L LA+ ++V+ +E+ + +V A N N + N + + +++ R Sbjct: 321 TIALYLAQFTEKVIGLEVHEAAVADAAANARINGIGNAEFIVGRAED------------R 368 Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILS-TT 338 L + + + VDPPR G+D + + I+Y+SC+ S+ RDL+ L Sbjct: 369 LPKLAAQGVKADVVVVDPPRKGVDKRALQAICDIGPERIVYVSCDSASMARDLAFLRHRG 428 Query: 339 HTIERLALFDQFPYTRHMECGVLLVRKPS 367 + + + D FP T H+EC LL RK + Sbjct: 429 YGVREIQPVDMFPQTHHVECVALLKRKEA 457 >gi|325913301|ref|ZP_08175669.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners UPII 60-B] gi|325477404|gb|EGC80548.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners UPII 60-B] Length = 448 Score = 254 bits (650), Expect = 1e-65, Method: Composition-based stats. Identities = 82/384 (21%), Positives = 151/384 (39%), Gaps = 39/384 (10%) Query: 3 GTLLIDQYEQQLAEKVDRLRQMMLAF---QVPNLQIFRSEPIHYRMRAEFHIWHDGDDLY 59 L +YE+QL K ++ ++ + N + E YR +A+ + L Sbjct: 80 AALAHMKYERQLEFKKQQVVNLLEKVHLNKKVNDCLASPESTAYRNKAQVPVRMVNGQLE 139 Query: 60 HIMFDQQTKERMRIDYFMPGSLLINALMIEMMA-----------TIRLEPLLRAKLFQID 108 F + + + + + F+ I+A ++ + I+ +R + Sbjct: 140 VGFFRKHSHDLVPMTDFLTTDKKIDAAVVAVRDILRKFNVPAYDEIKHNGEVRYLEIRRS 199 Query: 109 YLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD-RDYV 167 Q +V L DA + L + + L +KT + L ++Y+ Sbjct: 200 KANGQLMIVLVCLHKSFNNLDAVVQAIQSLDNVAC-----VILNHNPHKTNVILGEKEYI 254 Query: 168 ---DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNF 223 + + L ++ SF Q N+ + + + D+ ++ Y G G Sbjct: 255 LAGNGEIVDKIGDLSFKISSQSFFQINSLQTPRLYNLAIQKAQLTANDVVIDAYSGIGTI 314 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 L +A+H +VL VEI + +V+ A+ N N +NN + ++E E Sbjct: 315 GLSVAKHVKKVLGVEIVRDAVKDAKKNAILNGINNAEYFEGKAEELMPQWANE------- 367 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGM--VQAYPHILYISCNPDSLCRDLSIL-STTHT 340 + IFVDPPR GL D + + I+YISCNP ++ RDL + + + Sbjct: 368 -----GLKTDVIFVDPPRKGLTDTFIKAAVATSPKKIVYISCNPATMIRDLQVFQAAGYD 422 Query: 341 IERLALFDQFPYTRHMECGVLLVR 364 + + D FP T H+E VL+ + Sbjct: 423 FDCIDPVDMFPQTPHVETIVLMSK 446 >gi|307710372|ref|ZP_07646812.1| RNA methyltransferase, TrmA family [Streptococcus mitis SK564] gi|307618849|gb|EFN97985.1| RNA methyltransferase, TrmA family [Streptococcus mitis SK564] Length = 367 Score = 254 bits (650), Expect = 1e-65, Method: Composition-based stats. Identities = 79/383 (20%), Positives = 147/383 (38%), Gaps = 40/383 (10%) Query: 6 LIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHDGDDL 58 + Y++QL K D L Q + F + I EP +YR + +F + + Sbjct: 1 MHLHYDKQLEFKTDLLYQALKKFAPAGYENYEIRPTIGMQEPKYYRAKLQFQTRKFKNQV 60 Query: 59 YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----------LRAKLFQID 108 ++ Q + + + + + + + + +R + + Sbjct: 61 KAGLYAQNSHYLVELKDCLVQDKETQVIANRLAELLTYHQIPITDERKVLGVRTIMVRRA 120 Query: 109 YLTSQSDQAIVT---LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD 165 T Q IVT L + +L+ D ++ + A++ + I KT+I ++ Sbjct: 121 RKTGQVQIIIVTNCQLNFTKLVKDLVKDFPEVVTVAVNTNTAKTSEI-YGEKTEIIWGQE 179 Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGNGNFS 224 + E + + +F Q N + E V A + L++ YCG G Sbjct: 180 SIQEGVL----DYEFSLSPRAFYQLNPEQTEVLYNEAVKALDVNKEDHLIDAYCGVGTIG 235 Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284 A+ + ++I ++E A+ N +N +++E +E Sbjct: 236 FAFAKKVKTLRGMDIIPEAIEDAKRNAKRMGFDNTHYEAGTAEEIIPRWYKE-------- 287 Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTTHTIE 342 YR + VDPPR+GLDD + + Y ++YISCN +L RDL L + + Sbjct: 288 ----GYRADALIVDPPRTGLDDKLLDTILTYVPEKMVYISCNVSTLARDLGRLVEVYDLH 343 Query: 343 RLALFDQFPYTRHMECGVLLVRK 365 + D FP+T E V L++K Sbjct: 344 YIQSVDMFPHTARTEAVVKLIKK 366 >gi|291556131|emb|CBL33248.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Eubacterium siraeum V10Sc8a] Length = 493 Score = 254 bits (650), Expect = 1e-65, Method: Composition-based stats. Identities = 74/396 (18%), Positives = 134/396 (33%), Gaps = 49/396 (12%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFR----SEPIHYRMRAEFHIWHDGDD 57 +L YE QL K ++ + + + YR + + I D D Sbjct: 79 GCSLRHISYEAQLRAKEQFVKDAFTRIGGLSPEFLPIIRNTNINGYRNKLQIPIGTDKDG 138 Query: 58 L-YHIMFDQQTKERMRIDYFMPGS-----------LLINALMIEMMATIRLEPLLRAKLF 105 + + + + + + L + + +LR Sbjct: 139 NLIAGFYAFHSHRIVPCEKCLLQPDIFSKITADFLKISTGLNLTAYDETTHKGILRHLYL 198 Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD 165 + Y + + IV + + RL + + + T + L Sbjct: 199 RKGYYSGEICLCIVVAKNV----PEIKILSDRLLEKYPEIVSSVINVNN-RDTNVILG-- 251 Query: 166 YVDERLTVAGRTLI--------YRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELY 217 DE + + + I +F Q N + + +L+LY Sbjct: 252 --DEEIVLTSKNYICDIMCKIAVNIAPKAFYQVNTPCAEQLYSSACDFAEPKGKTVLDLY 309 Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277 CG G L +AR +++ VEI ++E A+ N AN + N + + + E + + Sbjct: 310 CGAGTIGLSMARTAKKIIGVEIVPEAIENAKQNALANGITNCEFICADAAEAARILHS-- 367 Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSIL 335 S R I VDPPR G + A+ P I+ +SCN + RD + Sbjct: 368 ----------RSLRPDVIMVDPPRKGCGRDACEQIAAFSAPRIVMVSCNAATAARDCACF 417 Query: 336 ST-THTIERLALFDQFPYTRHMECGVLLV-RKPSGW 369 + ++ ++ D F T H+E VLL +KP G Sbjct: 418 AELGYSTDKCVAVDMFSGTNHVETVVLLSHKKPDGH 453 >gi|153939426|ref|YP_001392140.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum F str. Langeland] gi|152935322|gb|ABS40820.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum F str. Langeland] gi|295320145|gb|ADG00523.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum F str. 230613] Length = 453 Score = 254 bits (650), Expect = 1e-65, Method: Composition-based stats. Identities = 82/391 (20%), Positives = 146/391 (37%), Gaps = 47/391 (12%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIF----RSEPIHYRMRAEFHIW--HDG 55 + YE+QL K ++L ++ + ++ E YR + EF G Sbjct: 79 GCSTQYIPYEKQLQIKEEQLLKLFKSKEIKGFDFLGVEKSPEEYEYRNKMEFTFGDMEKG 138 Query: 56 DDLYHIMFDQQTK-ERMRIDYFMPGSLLI-----------NALMIEMMATIRLEPLLRAK 103 DL M + + +D N + + E LR Sbjct: 139 GDLTLGMHVKNRNFSIVTVDNCEIVDRDFRNILTTVVNYFNEKRLPKYRVMSHEGFLRNL 198 Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDA------WRECAIRLRDALHARKYQIQLIGRANK 157 + + T + IVT EC ++ LH + + + +K Sbjct: 199 VIRKAKNTGEILINIVTTSQMEFDFKEIVDMLLKVECKGEIKGILHTINDTLSDVVQVDK 258 Query: 158 TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-EL 216 +I RDY+ E L L ++ +F Q N+ + V ++ +L Sbjct: 259 LEILYGRDYIIEELL----GLKFKIAPEAFFQTNSKGAEKLYSIVKDFLGDASSKVVFDL 314 Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276 YCG G ++A +V+ VE+ + +V+AA N N +NN + + + + +++ Sbjct: 315 YCGTGTIGQIVAPKAKKVIGVELIEEAVKAANENAKLNGLNNCEFIAGDVAKVIKDVKQ- 373 Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSI 334 + I +DPPR G+ + V + I+Y+SCNP +L DL Sbjct: 374 --------------KPDIIILDPPRPGVHPVALEYVVKFEPKEIIYVSCNPKTLVDDLKY 419 Query: 335 L-STTHTIERLALFDQFPYTRHMECGVLLVR 364 L + +E++ D FP+T H EC + R Sbjct: 420 LIDNGYKLEKVKGMDMFPHTPHTECVTRIER 450 >gi|322376104|ref|ZP_08050613.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus sp. C300] gi|321278872|gb|EFX55916.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus sp. C300] Length = 453 Score = 254 bits (650), Expect = 1e-65, Method: Composition-based stats. Identities = 77/387 (19%), Positives = 148/387 (38%), Gaps = 40/387 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54 ++ Y++QL K D L Q + F + I EP +YR + +F Sbjct: 81 GCQIMHLHYDKQLEFKTDLLHQALKKFAPAGYENYEIRPTIGMQEPKYYRAKLQFQTRKF 140 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----------LRAKL 104 + + ++ Q + + + + + + + + +R + Sbjct: 141 KNQVKAGLYAQNSHYLVELKDCLVQDKETQVIANRLAELLTYHQIPITDERKTLGVRTIM 200 Query: 105 FQIDYLTSQSDQAIVT---LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161 + T Q IVT L +L+ D ++ + A++ + I KT+I Sbjct: 201 VRRARKTGQVQIIIVTNRQLNLTQLVKDLVKDFPEVVTVAVNTNTAKTSEI-YGEKTEII 259 Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGN 220 ++ + E + + +F Q N + E + A + L++ YCG Sbjct: 260 WGQESIQEGVL----DYEFSLSPRAFYQLNPEQTEILYNEAIKALDVSKEDHLIDAYCGV 315 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G A+ + ++I ++E A+ N +N +++E ++ Sbjct: 316 GTIGFAFAKKVKSLRGMDIIPEAIEDAKRNAQKMGFDNTHYEAGTAEETIPRWYQD---- 371 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTT 338 YR + VDPPR+GLDD + + Y ++Y+SCN +L RDL L Sbjct: 372 --------GYRADALIVDPPRTGLDDKLLETILTYVPEKMVYVSCNVSTLARDLVKLVKV 423 Query: 339 HTIERLALFDQFPYTRHMECGVLLVRK 365 + ++ + D FP+T E V LV+K Sbjct: 424 YDLQYIQSVDMFPHTARTEAVVKLVKK 450 >gi|312870826|ref|ZP_07730932.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners LEAF 3008A-a] gi|312873060|ref|ZP_07733119.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners LEAF 2062A-h1] gi|311091293|gb|EFQ49678.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners LEAF 2062A-h1] gi|311093702|gb|EFQ52040.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners LEAF 3008A-a] Length = 450 Score = 254 bits (650), Expect = 1e-65, Method: Composition-based stats. Identities = 84/387 (21%), Positives = 151/387 (39%), Gaps = 39/387 (10%) Query: 3 GTLLIDQYEQQLAEKVDRLRQMMLAF---QVPNLQIFRSEPIHYRMRAEFHIWHDGDDLY 59 L +YE+QL K ++ ++ + N + E YR +A+ + L Sbjct: 80 AALAHMKYERQLEFKKQQVVNLLEKVHLNKKVNDCLASPESTAYRNKAQVPVRMVNGQLE 139 Query: 60 HIMFDQQTKERMRIDYFMPGSLLINALMIEMMA-----------TIRLEPLLRAKLFQID 108 F + + + + + F+ I+A ++ + I+ +R + Sbjct: 140 VGFFRKHSHDLVPMTDFLTTDKKIDAAVVAVRDILRKFNVPAYDEIKHNGEVRYLEIRRS 199 Query: 109 YLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD-RDYV 167 Q +V L D + L + + L +KT + L ++Y+ Sbjct: 200 KANGQLMIVLVCLHKSFNNLDTVVQAIQSLDNVAC-----VILNHNPHKTNVILGEKEYI 254 Query: 168 ---DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNF 223 + + L ++ SF Q N+ + + + D+ ++ Y G G Sbjct: 255 LAGNGEIVDKIGDLSFKISSQSFFQINSLQTPRLYNLAIQKAQLTADDVVIDAYSGIGTI 314 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 L +A+H +VL VEI + +V+ A+ N N VNN + ++E E Sbjct: 315 GLSVAKHVKKVLGVEIVRDAVKDAKKNAILNGVNNAEYFEGKAEELMPQWANE------- 367 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGM--VQAYPHILYISCNPDSLCRDLSIL-STTHT 340 + IFVDPPR GL D + + I+YISCNP ++ RDL + + + Sbjct: 368 -----GLKTDVIFVDPPRKGLTDTFIKAAVATSPKKIVYISCNPATMIRDLRVFQAAGYD 422 Query: 341 IERLALFDQFPYTRHMECGVLLVRKPS 367 + + D FP T H+E VLL + S Sbjct: 423 FDCIDPVDMFPQTPHVETIVLLSKLGS 449 >gi|309803859|ref|ZP_07697944.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners LactinV 11V1-d] gi|308164093|gb|EFO66355.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners LactinV 11V1-d] Length = 450 Score = 254 bits (650), Expect = 1e-65, Method: Composition-based stats. Identities = 84/387 (21%), Positives = 151/387 (39%), Gaps = 39/387 (10%) Query: 3 GTLLIDQYEQQLAEKVDRLRQMMLAF---QVPNLQIFRSEPIHYRMRAEFHIWHDGDDLY 59 L +YE+QL K ++ ++ + N + E YR +A+ + L Sbjct: 80 AALAHMKYERQLEFKKQQVVNLLEKVHLNKKVNDCLASPESTAYRNKAQVPVRMVNGQLE 139 Query: 60 HIMFDQQTKERMRIDYFMPGSLLINALMIEMMA-----------TIRLEPLLRAKLFQID 108 F + + + + + F+ I+A ++ + I+ +R + Sbjct: 140 VGFFRKHSHDLVPMTDFLTTDKKIDAAVVAVRDILRKFNVPAYDEIKHNGEVRYLEIRRS 199 Query: 109 YLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD-RDYV 167 Q +V L D + L + + L +KT + L ++Y+ Sbjct: 200 KANGQLMIVLVCLHKSFNNLDTVVQAIQSLDNVAC-----VILNHNPHKTNVILGEKEYI 254 Query: 168 ---DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNF 223 + + L ++ SF Q N+ + + + D+ ++ Y G G Sbjct: 255 LAGNGEIVDKIGDLSFKISSQSFFQINSLQTPRLYNLAIQKAQLTADDVVIDAYSGIGTI 314 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 L +A+H +VL VEI + +V+ A+ N N VNN + ++E E Sbjct: 315 GLSVAKHVKKVLGVEIVRDAVKDAKKNAILNGVNNAEYFEGKAEELMPQWANE------- 367 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGM--VQAYPHILYISCNPDSLCRDLSIL-STTHT 340 + IFVDPPR GL D + + I+YISCNP ++ RDL + + + Sbjct: 368 -----GLKTDVIFVDPPRKGLTDTFIKAAVATSPKKIVYISCNPATMIRDLRVFQAAGYD 422 Query: 341 IERLALFDQFPYTRHMECGVLLVRKPS 367 + + D FP T H+E VLL + S Sbjct: 423 FDCIDPVDMFPQTPHVETIVLLSKLGS 449 >gi|301060814|ref|ZP_07201628.1| 23S rRNA (uracil-5-)-methyltransferase RumA [delta proteobacterium NaphS2] gi|300445063|gb|EFK09014.1| 23S rRNA (uracil-5-)-methyltransferase RumA [delta proteobacterium NaphS2] Length = 466 Score = 254 bits (650), Expect = 1e-65, Method: Composition-based stats. Identities = 75/395 (18%), Positives = 153/395 (38%), Gaps = 56/395 (14%) Query: 9 QYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEF-------------H 50 +YE+QL K + +++ + V I YR + EF Sbjct: 90 RYEKQLTLKREHVKEPLEHIAGLKNVVVRPLIPSENIFGYRNKMEFSFSDRRWYLPDELP 149 Query: 51 IWHDGDDLYHIMFDQQT-KERMRIDYFMPGSLLINALMIEMMATIRLEPL----LRAKLF 105 ++ + T + + ++ + N ++ + ++ + L++ Sbjct: 150 FEKKDENFALGLHVPGTYHKVIDMEACLLQQQTGNDILRAVAQYVKNSNVPVYGLKSHEG 209 Query: 106 QIDYLTSQSDQA----IVTLIYHR-------LLDDAWRECAIRLRDALHARKYQIQLIGR 154 YLT + +A +V L+ + L + R++ ++ + I Sbjct: 210 YWRYLTIRHSEAFDHWMVNLVTSKNDASTLHPLAEHLCRKFPRIKTVVNNINGRKASIAV 269 Query: 155 ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-L 213 K K+ ++++++ +R NSF Q N + + E VL + + Sbjct: 270 GEKEKVLTGDGFINDKIG----PFSFRVSANSFFQTNTSAALKLYEQVLRYADPKGKEQV 325 Query: 214 LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273 L+LY G G + L+ V +EI++ + A+ N N+V+N + V +E Sbjct: 326 LDLYSGTGTIPIFLSDRVRSVTGIEISESATADAKRNALVNNVHNCRFVCGDIRE----- 380 Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG--MVQAYPHILYISCNPDSLCRD 331 + ++ + +DPPR+G+ + M I+Y+SCNP +L RD Sbjct: 381 ----------KLGTVGFKPDIMIIDPPRAGMHKDVLAETMGINPRRIVYVSCNPATLARD 430 Query: 332 LSILSTTHTIERLALFDQFPYTRHMECGVLLVRKP 366 L I++ + + + D FP+T H+E L R+ Sbjct: 431 LEIMAEAYELNEIQPVDMFPHTYHIESVAKLSRRK 465 >gi|227523883|ref|ZP_03953932.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus hilgardii ATCC 8290] gi|227088903|gb|EEI24215.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus hilgardii ATCC 8290] Length = 472 Score = 254 bits (649), Expect = 1e-65, Method: Composition-based stats. Identities = 75/381 (19%), Positives = 143/381 (37%), Gaps = 41/381 (10%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPN-------LQIFRSEPIHYRMRAEFHIWHDGDDLYHIM 62 Y +QL K D ++ + ++ I +P HYR +A F I DG + + Sbjct: 108 YPKQLEFKRDVIKDSLEKYKPAGYRKYKLLPTIGMDDPTHYRNKATFQIRSDGQKVIAGL 167 Query: 63 FDQQTKERMR-----------IDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLT 111 + ++ + + +I+ L I + + +++ + + Sbjct: 168 YKHRSHTVVDLKTSALQYPLTMKVMRAVVEMIDDLGIPVYDEEKNAGIIKTVVVR---AA 224 Query: 112 SQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVD--- 168 + +D+A VT I + R+ L +Q + KT + + + Sbjct: 225 TATDEAQVTFITQSKKLLKKHQLLERIDHDLPEVVSVMQNVNPG-KTSLVWGEETIHLAG 283 Query: 169 -ERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELYCGNGNFSLV 226 +++T L + +F Q N + + + A + L++ Y G G L Sbjct: 284 KDKITEVLNNLSFDLSARAFLQVNPEMTAVLYQEAFKALELSGKEKLVDAYSGVGTIGLS 343 Query: 227 LARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDID 286 +AR V ++ K +V+ A N N + N +++ + Sbjct: 344 VARQVREVRGMDTIKDAVDDANANAIKNGIVNALYEVGEAEKLLPLWIEDV--------- 394 Query: 287 IHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTIERL 344 + + VDPPR+GL D+ + + +YISCNP +L RDL L+ + +E + Sbjct: 395 ---WNPTAMIVDPPRTGLADSLIDTILDITPKKFVYISCNPSTLARDLVKLTRKYNVEYI 451 Query: 345 ALFDQFPYTRHMECGVLLVRK 365 D P T EC V +K Sbjct: 452 QSVDLMPQTSRCECVVKFKKK 472 >gi|325262190|ref|ZP_08128928.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium sp. D5] gi|324033644|gb|EGB94921.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium sp. D5] Length = 471 Score = 254 bits (649), Expect = 1e-65, Method: Composition-based stats. Identities = 89/395 (22%), Positives = 154/395 (38%), Gaps = 48/395 (12%) Query: 2 SGTLL-IDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHI---WH 53 G + YE+QL K ++++++ + + YR + EF + Sbjct: 81 GGCMYQTMGYEEQLKMKAGQVKELLDEVVKEPYENEGIKASPKEFRYRNKMEFSFGDEYK 140 Query: 54 DGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMA-----------TIRLEPLLRA 102 DG + T + + M +N +++ ++ ++ LR Sbjct: 141 DGPLSLGLHKKGSTYDVLTAGDCMLVHEDMNKILLCVLEYFKERNVGYYRKLQHVGYLRH 200 Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRL------RDALHARKYQIQLIGRAN 156 L + T + +VT E + L LH + + +++ Sbjct: 201 LLLRRGDTTGEILVNLVTTTQEEHDLSGLVEGLLELDLEGEIVGILHILNDSLSDVVQSD 260 Query: 157 KTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG-DLLE 215 +T++ +DY ER+ + ++ SF QPN+ + E V IQ + + Sbjct: 261 ETRVLYGKDYFYERIL----GMEFKITPFSFFQPNSRGAEVLYETVREYIGDIQDMTVFD 316 Query: 216 LYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275 L+ G G VLA +V+ VEI + +VEAAR N A N + N + + + Sbjct: 317 LFSGTGTIGQVLAPVAKQVIGVEIVEEAVEAARENAARNGLGNCRFIAGDVFKVL----- 371 Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLS 333 D + I +DPPR G+ + + Y I+YISC SL RDL Sbjct: 372 ----------DEIEEKPDVIVLDPPRDGIHPKALPKILDYQVDRIVYISCKATSLTRDLE 421 Query: 334 -ILSTTHTIERLALFDQFPYTRHMECGVLLVRKPS 367 IL + +E++ DQF T H+E LL RK + Sbjct: 422 MILGRGYRVEKVVAVDQFCETVHVETVALLTRKKA 456 >gi|194337875|ref|YP_002019669.1| RNA methyltransferase, TrmA family [Pelodictyon phaeoclathratiforme BU-1] gi|194310352|gb|ACF45052.1| RNA methyltransferase, TrmA family [Pelodictyon phaeoclathratiforme BU-1] Length = 488 Score = 254 bits (649), Expect = 1e-65, Method: Composition-based stats. Identities = 87/404 (21%), Positives = 153/404 (37%), Gaps = 55/404 (13%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ----VPNLQIFR-SEPIHYRMRAEFH------ 50 L+ +Y+ QL K +++ + P ++ EP HYR + EF Sbjct: 87 GCKLMHIRYDAQLVYKQKKVKDALEHLGDFVAPPVMEALACREPFHYRNKIEFSCSNMRY 146 Query: 51 ----------IWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL- 99 + + ++ + IDY +N ++ L Sbjct: 147 LLPEELSMETLARPKEFALGFHTPGNFEKVIDIDYCYLAKESMNRVLALTREFALANALV 206 Query: 100 ----------LRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAI-----RLRDALHA 144 LR + + + +VT Y L + +R + ++ Sbjct: 207 PYGAKAHTGFLRNLVVRFSENREEVMVNLVTSWYDEPLMERYRMHLESGMAGQKMTVVNN 266 Query: 145 RKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA 204 + + K Y+ ERL L +R NSF Q N+ + + +L Sbjct: 267 VTERKNTVATGEKEFTLSGAGYITERLG----ALDFRISANSFFQTNSSQAELLYQSILE 322 Query: 205 -ATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVR 263 A + + +LYCG G +L LA+H +V+ +E+ + S+ AR N A N ++NV + Sbjct: 323 VAGLRAEDTVYDLYCGTGTITLYLAKHCRQVVGLEVVESSINDARSNAAFNSIDNVAFFQ 382 Query: 264 MSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYI 321 + K+F + + L D I DPPR+G+ + M++ P I+Y+ Sbjct: 383 VDLKDF------QGMLDLLGSYDAPG----VIITDPPRAGMHPKALSTMLRLRPRRIIYV 432 Query: 322 SCNPDSLCRDLSILS-TTHTIERLALFDQFPYTRHMECGVLLVR 364 SCNP SL RD + + + + D FP+T H+E R Sbjct: 433 SCNPASLARDGKEICLQGYKLLSVQPVDMFPHTSHIESVACFER 476 >gi|254423658|ref|ZP_05037376.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Synechococcus sp. PCC 7335] gi|196191147|gb|EDX86111.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Synechococcus sp. PCC 7335] Length = 483 Score = 254 bits (649), Expect = 2e-65, Method: Composition-based stats. Identities = 78/381 (20%), Positives = 144/381 (37%), Gaps = 45/381 (11%) Query: 9 QYEQQLAEKVDRLRQMMLAFQV-----PNLQIFRSEPIHYRMRAEFHIWHDG-DDLYHIM 62 YE+QLA K + + + + E + YR +A + + D+ Sbjct: 121 NYEEQLAAKHRLVVDALARIGKLSNVRVDPVLAAEEQLGYRNKATYPLGLSPTKDVKAGY 180 Query: 63 FDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-----------LRAKLFQIDYLT 111 + + + + ++ ++ L+ + I+ ++ +I T Sbjct: 181 YQKGSHRLVNLNQCPVQDERLDPLLAAVKKDIQAREWKIYDERSHKGHIKHLALRIGRRT 240 Query: 112 SQSDQAIVTLIYHRLLDDA----WRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYV 167 Q +V+ W E + L ++ +T + Y+ Sbjct: 241 GQILVTLVSRSTKLKGIHEQAQQWMERYPEVVGVLVNLNWKKTNAIFGPETFLIAGSSYL 300 Query: 168 DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFSLV 226 +E+ L + +F Q N +L+ + +++ + YCG G F+L Sbjct: 301 EEKFA----NLTFHIQPATFFQVNTTQAERLLDEIQTELALTGDEVIVDAYCGVGTFTLP 356 Query: 227 LARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDID 286 LAR + + +E + SV A+ N A N + NV L D+D Sbjct: 357 LARQVKQCIGLESSTESVVQAQENAALNGIENVGFRIGDVAAL------------LPDLD 404 Query: 287 IHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILST--THTIE 342 + + + +DPPR G + A + + A I+Y+SCNP +L RDL +LS + + Sbjct: 405 V---KPDILLLDPPRKGCELAVLESIVAIKPKRIVYVSCNPATLARDLRVLSETGGYRVT 461 Query: 343 RLALFDQFPYTRHMECGVLLV 363 R+ D FP T H+EC V L Sbjct: 462 RVQPADFFPQTAHVECAVFLE 482 >gi|153854119|ref|ZP_01995427.1| hypothetical protein DORLON_01418 [Dorea longicatena DSM 13814] gi|149753168|gb|EDM63099.1| hypothetical protein DORLON_01418 [Dorea longicatena DSM 13814] Length = 470 Score = 254 bits (649), Expect = 2e-65, Method: Composition-based stats. Identities = 88/406 (21%), Positives = 151/406 (37%), Gaps = 61/406 (15%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL--QIFRSEPIH--YRMRAEFHIW--HDG 55 T YE+QLA K +++++MM + + P+ YR + EF + Sbjct: 81 GCTYQNLPYEEQLAMKNEQVKKMMDEAVNGEYIWEGIKPSPVRSEYRNKMEFSFGDEYKD 140 Query: 56 DDLYHIMFDQQT-KERMRIDYFMPGSLLINALMIEMMATIRLEPL-----------LRAK 103 L M + + + + + ++ + R L R Sbjct: 141 GPLALGMHKRGSFHDIVNVTDCQIVDEDYRKILACTLECARESGLPYYHRMRHVGYFRHL 200 Query: 104 LFQIDYLTSQSDQAIVTLIYHRLL--------------DDAWRECAIR------LRDALH 143 L + T + +VT L DAW E L LH Sbjct: 201 LVRKAVKTGEILVDLVTASDTAELGVDPAEAMKKIQTFKDAWLEKMTAMNFDGTLVGILH 260 Query: 144 ARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL 203 + + + + T++ +DY E L L ++ SF Q N+ + E Sbjct: 261 TKNDSLADVVKDEGTEVLFGQDYFYEELL----GLKFKITPFSFFQTNSLGAEVLYETAR 316 Query: 204 AATKGIQGDLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262 ++ +LY G G + +LA +V+ VEI + +VEAA+ N N+++N Sbjct: 317 EYIGDTNEKVVFDLYSGTGTIAQILAPVAKKVVGVEIVEEAVEAAKENAKLNNLDNCTFW 376 Query: 263 RMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILY 320 LK ID I +DPPR G++ + + ++Y Sbjct: 377 AGDV---------------LKVIDELGEVPDLIMLDPPRDGVNPKALMKILNFGVERLVY 421 Query: 321 ISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVRK 365 I+C P SL RDL ++ + +E+++ D FP T H+E LL +K Sbjct: 422 IACKPTSLARDLEMIQGRGYKVEKISGVDLFPGTYHVETVCLLSKK 467 >gi|167750197|ref|ZP_02422324.1| hypothetical protein EUBSIR_01171 [Eubacterium siraeum DSM 15702] gi|167656759|gb|EDS00889.1| hypothetical protein EUBSIR_01171 [Eubacterium siraeum DSM 15702] Length = 493 Score = 254 bits (649), Expect = 2e-65, Method: Composition-based stats. Identities = 73/396 (18%), Positives = 134/396 (33%), Gaps = 49/396 (12%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFR----SEPIHYRMRAEFHIWHDGDD 57 +L YE QL K ++ + + + YR + + I D D Sbjct: 79 GCSLRHISYEAQLRAKEQFVKDAFTRIGGLSPEFLPIIRNTNINGYRNKLQIPIGTDKDG 138 Query: 58 L-YHIMFDQQTKERMRIDYFMPGS-----------LLINALMIEMMATIRLEPLLRAKLF 105 + + + + + + L + + +LR Sbjct: 139 NLIAGFYAFHSHRIVPCEKCLLQPDIFLKITADFLKISTGLNLTAYDETTHKGILRHLYL 198 Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD 165 + Y + + IV + + RL + + + T + L Sbjct: 199 RKGYYSGEICLCIVVAKNV----PEIKILSDRLLEKYPEIVSSVINVNN-RDTNVILG-- 251 Query: 166 YVDERLTVAGRTLI--------YRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELY 217 DE + + + I +F Q N + + +L+LY Sbjct: 252 --DEEIVLTSKNYICDIMCKNAVNIAPKAFYQVNTPCAEQLYSSACDFAEPKGKTVLDLY 309 Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277 CG G L +AR +++ VEI ++E A+ N AN + N + + + E + + Sbjct: 310 CGAGTIGLSMARTAKKIIGVEIVPEAIENAKQNALANGITNCEFICADAAEAARILHS-- 367 Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSIL 335 + R I VDPPR G + A+ P I+ +SCN + RD + Sbjct: 368 ----------RNLRPDVIMVDPPRKGCGRDACEQIAAFSAPRIVMVSCNAATAARDCACF 417 Query: 336 ST-THTIERLALFDQFPYTRHMECGVLLV-RKPSGW 369 + ++ ++ D F T H+E VLL +KP G Sbjct: 418 AELGYSTDKCVAVDMFSGTNHVETVVLLSHKKPDGH 453 >gi|110598563|ref|ZP_01386831.1| RNA methyltransferase, TrmA family [Chlorobium ferrooxidans DSM 13031] gi|110339797|gb|EAT58304.1| RNA methyltransferase, TrmA family [Chlorobium ferrooxidans DSM 13031] Length = 480 Score = 254 bits (648), Expect = 2e-65, Method: Composition-based stats. Identities = 85/399 (21%), Positives = 153/399 (38%), Gaps = 47/399 (11%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWH--- 53 L+ +YE Q+A K +++ + + + + P+HYR + EF Sbjct: 87 GCKLMHIRYEAQIAYKEKKVKDALEHLGSFSNPPVSPVLAAASPVHYRNKIEFSCSSMRY 146 Query: 54 -----------DGDDLYHIMFDQQTK--ERMRIDYFMPGSLLINA---LMIEMMATIRLE 97 + + + F + + IDY + L+N L E LE Sbjct: 147 LLPEELSQEELERPKNFALGFHTPGNFEKVIDIDYCYLATELMNRVLKLTREFALANNLE 206 Query: 98 PL-LRAKLFQIDYL----TSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLI 152 P +RA + L + + +V L+ + ++ L+ AL K + Sbjct: 207 PYGVRAHTGFLRNLVVRFSEDQRELMVNLVTSWYDEKLMQQYNAALQSALAGEKVTVVNN 266 Query: 153 GRANKTKICLDRD----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATK 207 + K + + +T L +R NSF Q N+ + +L A Sbjct: 267 VTSRKNGVATGEEEFLLSGTGIITERLGELDFRISANSFFQTNSRQAEVLYNAILDVAGL 326 Query: 208 GIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267 + +LYCG G +L +A+H + +E+ + S+ AR N A N V N ++ K Sbjct: 327 NEDDTVYDLYCGTGTITLYMAKHCRSAVGLEVVESSINDARSNAALNGVENADFYQVDLK 386 Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNP 325 +F + + I DPPR+G+ + + + I+Y+SCNP Sbjct: 387 DFHAILDKLESHG----------APGVIITDPPRAGMHPKALETMLRFRPRRIVYVSCNP 436 Query: 326 DSLCRDLSILS-TTHTIERLALFDQFPYTRHMECGVLLV 363 SL RD ++ +T++ + D FP+T H+E Sbjct: 437 ASLARDGKEIALQGYTLKSVQPVDMFPHTAHIESVACFE 475 >gi|225019491|ref|ZP_03708683.1| hypothetical protein CLOSTMETH_03444 [Clostridium methylpentosum DSM 5476] gi|224947712|gb|EEG28921.1| hypothetical protein CLOSTMETH_03444 [Clostridium methylpentosum DSM 5476] Length = 467 Score = 254 bits (648), Expect = 2e-65, Method: Composition-based stats. Identities = 81/387 (20%), Positives = 144/387 (37%), Gaps = 39/387 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI--FRSEP--IHYRMRAEFHIWHDGDD 57 +L +YE +L K ++ +L + S P YR +A+F + Sbjct: 92 GCSLRHIRYEAELDIKRRQVEACFRRIGGIDLTVERILSNPHTEGYRNKAQFPVALRDGK 151 Query: 58 LYHIMFDQQTKERMRIDYFMPGSLL-----------INALMIEMMATIRLEPLLRAKLFQ 106 + +++ + S I+ + L+R + Sbjct: 152 AVAGFYAKRSHRVVPCGDCRLQSPAFAPLVRVILDFIDEYHLPPYDETNHTGLIRNLYLR 211 Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWR----ECAIRLRDALHARKYQIQLIGRANKTKICL 162 T + +V H D C +++ L R Q + ++ + Sbjct: 212 EAPATGEIMVCLVATKKHIPSADELARRLVACNPKVKSVLVNRNSQKTNVILGDRCSVVW 271 Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNG 221 + + + L R + SF Q N+ + + A + L++LYCG G Sbjct: 272 GKPVIHDVL----RGVDVELSPLSFYQVNSLQAERLYDLAEEYAHLTGEETLVDLYCGAG 327 Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281 L +A RV+ VEI +VE AR + N V N + + +KE +++ + Sbjct: 328 TIGLSMAGKAKRVIGVEIIPVAVEDARRSAQRNGVRNAEFLCADAKEAARSLAQ------ 381 Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STT 338 R + VDPPR G D + + + A I+ ISCNP + RD +L Sbjct: 382 ------QGLRPDVVIVDPPRKGCDASVLQSICEMAPQRIVMISCNPATAARDCGLLQQQG 435 Query: 339 HTIERLALFDQFPYTRHMECGVLLVRK 365 + +E +A D F T H+EC + LV++ Sbjct: 436 YRVEEVAAADLFSRTLHVECVISLVKE 462 >gi|256028670|ref|ZP_05442504.1| tRNA (Uracil-5-) -methyltransferase [Fusobacterium sp. D11] gi|289766583|ref|ZP_06525961.1| tRNA (Uracil-5-)-methyltransferase [Fusobacterium sp. D11] gi|289718138|gb|EFD82150.1| tRNA (Uracil-5-)-methyltransferase [Fusobacterium sp. D11] Length = 456 Score = 254 bits (648), Expect = 2e-65, Method: Composition-based stats. Identities = 73/383 (19%), Positives = 159/383 (41%), Gaps = 34/383 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAF-QVPNLQI----FRSEPIHYRMRAEFHIWHDGD 56 + +YE QL K + ++M + +++I + +YR + + Sbjct: 80 GCDFAMLKYESQLKYKKLMVEEVMRKIAGLSDIEISDVLASEDIYNYRNKITEPFSIYNN 139 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-------LRAKLFQIDY 109 + F +++ E + + S L N ++ E+ + + + L I Sbjct: 140 KIITGFFKRKSHEIFEVGENILNSKLGNRIIKELKEILNKNKISVYNEITHKGLLRNIMI 199 Query: 110 LTSQSDQAIVTLIYHR-LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR---- 164 T+ +++A+V LI + + + ++ +LR+ + K I + + KT + Sbjct: 200 RTNSNNEAMVVLIINSNKITENIKKLLFKLRENIEEIK-SIYISLNSKKTNTVIGEKNIL 258 Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNF 223 Y ++ + + + SF Q N + + ++ I +++ Y G G Sbjct: 259 IYGEKSIKENINGIEFHISPTSFFQINIKQAKRLYDIAISFFDDIDNKYIVDAYSGTGTI 318 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 +++++ +V A+EI K + E N + N++ + + ++ L Sbjct: 319 GMIMSKKAKKVYAIEIVKSASEDGEKTAKENGIENIEFINGAVEK------------ELV 366 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST-THT 340 + ++ + TI DPPR GL+ + + V ++YISCNP + RD+ + S + Sbjct: 367 KLINNNQKIDTIIFDPPRKGLEASIIDKVAELNLKEVVYISCNPSTFARDIKLFSEKGYV 426 Query: 341 IERLALFDQFPYTRHMECGVLLV 363 +++L D FP T H+EC L+ Sbjct: 427 LKKLQAVDMFPQTSHIECVGLMQ 449 >gi|163802964|ref|ZP_02196851.1| 23S rRNA (uracil-5-)-methyltransferase [Vibrio sp. AND4] gi|159173254|gb|EDP58082.1| 23S rRNA (uracil-5-)-methyltransferase [Vibrio sp. AND4] Length = 439 Score = 254 bits (648), Expect = 2e-65, Method: Composition-based stats. Identities = 87/371 (23%), Positives = 161/371 (43%), Gaps = 30/371 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRS---EPIHYRMRAEFHIWHDGD-- 56 L +Y+QQL K LRQ+M F ++++ + + YR RA + D Sbjct: 90 GCDLQHLKYDQQLTHKQQTLRQLMRKFAGSDIELDAPVLGDSLSYRRRARVSLLVDKKTR 149 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116 L+ +Q+K+ ++ + +N L+ E+ +T++ +L ++ + S Sbjct: 150 KLHFGFRKKQSKQIAQVTDCPVLAPELNVLLPEIYSTLKAFKK-SEQLGHVELVLGDSGP 208 Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGR 176 I TL + L D + L HA + L+ ++ + + + V Sbjct: 209 CI-TLRHLSKLADEETNTLVALARRHHA---SLYLMPETDQLNLIEGDVPFYQEVGV--- 261 Query: 177 TLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVL 235 T+ + N+F Q N +N M+ + + +L+L+CG GNFSL +A+H V+ Sbjct: 262 TVPF--TPNNFIQVNQAVNQKMVAQAVDWLDPKSDERVLDLFCGLGNFSLPIAKHAKHVV 319 Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295 VE VE A N + N +NN + + ++ + + +F + Sbjct: 320 GVEGVAEMVEKAANNASLNQINNAQFYHANLEQ------------DFEGQVWAAEQFDKV 367 Query: 296 FVDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYT 353 +DP R+G + V ++Y+SCNP +L RD S+L + + +L + D FP+T Sbjct: 368 LLDPARAGASGIIDQVSVLGAQRVVYVSCNPATLARDSQSLLGQGYQLTKLGMLDMFPHT 427 Query: 354 RHMECGVLLVR 364 H+E L + Sbjct: 428 SHLESMALFEK 438 >gi|312144153|ref|YP_003995599.1| RNA methyltransferase, TrmA family [Halanaerobium sp. 'sapolanicus'] gi|311904804|gb|ADQ15245.1| RNA methyltransferase, TrmA family [Halanaerobium sp. 'sapolanicus'] Length = 456 Score = 254 bits (648), Expect = 2e-65, Method: Composition-based stats. Identities = 81/389 (20%), Positives = 153/389 (39%), Gaps = 41/389 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAF-QVPNLQIFR----SEPIHYRMRAEFHIW-HDG 55 L +Y+++L K + L+Q++ + +I + YR +A+F + + Sbjct: 80 GCQLQHLEYKKELELKNNNLQQIIKRIAGIDEYKINEVLAAEDDFRYRNKAQFPLTTKES 139 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGSLLINAL-----------MIEMMATIRLEPLLRAKL 104 ++ + + + E + + LIN + I + E LLR + Sbjct: 140 GEITAGFYKRGSHEVVPYHDCLIQHPLINRILKTTLKELNKREISVYDEETAEGLLRHLV 199 Query: 105 FQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIR----LRDALHARKYQIQLIGRANKTKI 160 ++ T+Q+ VT + E + L+ + + + K I Sbjct: 200 IRVGVCTNQALLIFVTNGNEFKAKENIAEKILAAIPELKGVIQNINNKNTNVIFGKKDII 259 Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCG 219 +Y+ E + Y SF Q N + VL + + +++ + G Sbjct: 260 IRGENYIKEYINKTA----YLISARSFFQVNTLQAEKLYNKVLDFLEENNEQKIVDAFSG 315 Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279 G+ +L +A ++V AVE KP+V+ + N A N + N+K + ++ + E Sbjct: 316 TGSIALYIAEKAEKVFAVESLKPAVKDGKRNAALNKIKNIKFINGLVEDELAKILAEE-- 373 Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILST 337 + +I DPPR GL + T+ ++ ++YISCNP + RDL L Sbjct: 374 -----------KIDSIIFDPPRKGLAEKTIDLLNNLEIEKVIYISCNPATQARDLKKLKG 422 Query: 338 THTIERLALFDQFPYTRHMECGVLLVRKP 366 + + + D FP T H+E LL K Sbjct: 423 KYRLIEIQGVDMFPNTYHIESVALLKLKN 451 >gi|188585106|ref|YP_001916651.1| RNA methyltransferase, TrmA family [Natranaerobius thermophilus JW/NM-WN-LF] gi|179349793|gb|ACB84063.1| RNA methyltransferase, TrmA family [Natranaerobius thermophilus JW/NM-WN-LF] Length = 454 Score = 253 bits (647), Expect = 2e-65, Method: Composition-based stats. Identities = 75/382 (19%), Positives = 146/382 (38%), Gaps = 35/382 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFHIWHDGD 56 L Y+ QL K + + M I P +YR + + + G Sbjct: 85 GCQLQHLSYKGQLQYKENLVANQMKKVAGLKNPRVLPAIGMESPWYYRNKFQIPVKPIGG 144 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL------LRAKLFQIDYL 110 +F ++++ + ID+ M N ++ +M + L+ + ++ Sbjct: 145 KPRLGLFQKRSQNLVEIDHCMIQKHGNNEVLEKMRNLVDSYEKEFYNCELKHIISRVGDK 204 Query: 111 TSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY 166 T Q VT + +++ + + L + + + ++ K R+Y Sbjct: 205 TDQVQLTFVTGSEKIDNKQMILEPLKNGMANLVGIVQNINKKPRGNVLGDRFKTLWGREY 264 Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNFSL 225 + + L +R +F Q N + + V K +++++YCG G SL Sbjct: 265 LMDNLLDK----KFRVSAGAFYQVNPSQTEVLYQKVFELCKLKGVENVMDIYCGIGTISL 320 Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285 + A + +V+ +EIA+ +V+ A N N N + +++ + Sbjct: 321 LAAENASKVVGIEIAEEAVKDANINKNINGQENAWFYQARAED------------EKTES 368 Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILST-THTIE 342 I Y + + +DPPR G D+ + + I Y+SCNP +L RD+ L + E Sbjct: 369 IIQDYSPEIVIMDPPRKGCDENLLTSLDWIRPEKIAYVSCNPATLARDVGKLIEFGYYPE 428 Query: 343 RLALFDQFPYTRHMECGVLLVR 364 D FP T H+E +L + Sbjct: 429 LFQPVDMFPQTTHIEVICILTK 450 >gi|226323301|ref|ZP_03798819.1| hypothetical protein COPCOM_01073 [Coprococcus comes ATCC 27758] gi|225208491|gb|EEG90845.1| hypothetical protein COPCOM_01073 [Coprococcus comes ATCC 27758] Length = 455 Score = 253 bits (647), Expect = 2e-65, Method: Composition-based stats. Identities = 89/393 (22%), Positives = 148/393 (37%), Gaps = 47/393 (11%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL--QIFRSEPIH--YRMRAEFHIW--HDG 55 T YE+Q+ K ++ MM A + + + P+ YR + EF + Sbjct: 81 GCTYQNLPYEKQVEMKEAQIHAMMDAAVDGDYIWEGVKESPVREAYRNKMEFSFGDEYKD 140 Query: 56 DDLYHIMFDQQT-KERMRIDYFMPGSLLINALMIEMMATIRLEPL-----------LRAK 103 L M + + + + + ++ ++ L R Sbjct: 141 GPLALGMHKRGSFHDIVNVTECKIVDEDFRRIIKAVLEFATDTGLPYYHRMRHTGFFRHL 200 Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAI------RLRDALHARKYQIQLIGRANK 157 L + T + +VT +L + E +L LH + + + Sbjct: 201 LVRKAVRTGEILIDLVTTSEAQLDEARLVEKLTGLSYDGKLAGILHTTNNSLADVVKDEG 260 Query: 158 TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-EL 216 TKI +DY E L L ++ SF Q N+ + E + + ++ +L Sbjct: 261 TKILYGQDYFYEELL----GLKFKITPFSFFQTNSLGAEVLYEAARSYIGETKDKVIFDL 316 Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276 Y G G + +LA +V+ VEI + +VEAA+ N A N ++N Sbjct: 317 YSGTGTIAQILAPVAKKVVGVEIVEEAVEAAKENAALNGLDNCTFWAGDV---------- 366 Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSI 334 LK ID I +DPPR G+ + + ++YI+C P SL RDL + Sbjct: 367 -----LKVIDDLGEVPDLIVLDPPRDGVHPKALEKIIDFGVERMVYIACKPTSLARDLEL 421 Query: 335 LST-THTIERLALFDQFPYTRHMECGVLLVRKP 366 L + +ER+ D FP T H+E LL RK Sbjct: 422 LQGRGYQVERIGCVDLFPSTYHVETVCLLSRKD 454 >gi|156975785|ref|YP_001446692.1| 23S rRNA 5-methyluridine methyltransferase [Vibrio harveyi ATCC BAA-1116] gi|226725399|sp|A7MTS9|RUMA_VIBHB RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|156527379|gb|ABU72465.1| hypothetical protein VIBHAR_03529 [Vibrio harveyi ATCC BAA-1116] Length = 439 Score = 253 bits (647), Expect = 3e-65, Method: Composition-based stats. Identities = 85/372 (22%), Positives = 159/372 (42%), Gaps = 32/372 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRS---EPIHYRMRAEFHIWHDGD-- 56 L Y+QQL K LRQ+M F ++++ E + YR RA ++ D Sbjct: 90 GCDLQHLNYDQQLTHKQQTLRQLMRKFAGSDIELGAPVLGESLGYRRRARVSLFVDKKTR 149 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116 L+ +Q+K+ ++ + +N L+ E+ +T++ +L ++ + + Sbjct: 150 QLHFGFRKKQSKQIAQVTDCPVLAPELNVLLPEIYSTLKAFKK-PEQLGHVELVLG-DNA 207 Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGR 176 +TL + L + + L A+++Q L ++ D V+ + Sbjct: 208 PCITLRHLNKLTEKETNTLVEL-----AKRHQASLYLMPETDQL----DLVEGEVPFYQE 258 Query: 177 -TLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRV 234 + N+F Q N +N M+ + + +L+L+CG GNFSL +A+ V Sbjct: 259 AGVTVPFTPNNFIQVNQAVNQKMVAQAVDWLDPKSDERVLDLFCGLGNFSLPIAKRAKHV 318 Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294 + VE VE A N + N +NN + + ++ + + +F Sbjct: 319 VGVEGVAEMVEKAVNNASLNQINNARFYHANLEQ------------DFEGQVWAAEQFDK 366 Query: 295 IFVDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPY 352 + +DP R+G + V I+Y+SCNP +L RD S+L + + +L + D FP+ Sbjct: 367 VLLDPARAGASGIIDQVSVLGARRIVYVSCNPATLARDSQSLLEQGYQLTKLGMLDMFPH 426 Query: 353 TRHMECGVLLVR 364 T H+E L + Sbjct: 427 TSHLESMALFEK 438 >gi|325695098|gb|EGD37000.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis SK150] Length = 456 Score = 253 bits (647), Expect = 3e-65, Method: Composition-based stats. Identities = 79/392 (20%), Positives = 146/392 (37%), Gaps = 46/392 (11%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54 ++ Y++QL K D LRQ + F + I E ++YR + +F Sbjct: 81 GCQIMHLHYDKQLEFKEDLLRQALKKFAPAGYENYEIRPTIGMKESLYYRAKLQFQTRKY 140 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGSLL---INALMIEMMATIRLEPLLRAKLFQIDYL- 110 D++ ++ Q + + + + + I + ++ RL K + + Sbjct: 141 KDEVKAGLYAQNSHYLVSLKNCLVQDKVTQKIINKVARLLGKYRLPIYDERKTAGVRTVM 200 Query: 111 ---TSQSDQAIVTLIYHRLLD---------DAWRECAIRLRDALHARKYQIQLIGRANKT 158 ++ Q + + R LD + E + ++ +I +KT Sbjct: 201 IRRARKTGQVQMIFVTGRKLDFSPVVQDLVAEFPELETVAVNYHTSKSSEI----YGDKT 256 Query: 159 KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELY 217 +I + + E + + +F Q N + E V A + L++ Y Sbjct: 257 EIIWGEEAIQEGVL----NYEFSLSPRAFYQLNPEQTEVLYREAVKALDVTKEDHLIDAY 312 Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277 CG G A+ + ++I ++E A+ N N +++E E Sbjct: 313 CGVGTIGFAFAKKVKSLRGMDIIPEAIEDAKRNAKRMGFTNTLYEAGTAEEIIPRWYAE- 371 Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL 335 YR + VDPPR+GLDD + + A ++Y+SCN +L RDL L Sbjct: 372 -----------GYRADALIVDPPRTGLDDKLLETIVRYAPEKMVYVSCNVSTLARDLVKL 420 Query: 336 STTHTIERLALFDQFPYTRHMECGVLLVRKPS 367 + + + D FP+T E V L +K S Sbjct: 421 CRVYDVRYIQSVDMFPHTARTEAVVKLSKKDS 452 >gi|164687720|ref|ZP_02211748.1| hypothetical protein CLOBAR_01362 [Clostridium bartlettii DSM 16795] gi|164603494|gb|EDQ96959.1| hypothetical protein CLOBAR_01362 [Clostridium bartlettii DSM 16795] Length = 453 Score = 253 bits (647), Expect = 3e-65, Method: Composition-based stats. Identities = 84/394 (21%), Positives = 153/394 (38%), Gaps = 49/394 (12%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI--FRSEPIH--YRMRAEFHIWHDGDD 57 T+L YE+QL K ++ + + ++ + S P + YR + EF ++ D Sbjct: 79 GCTILSLPYEKQLELKKQQILDLFESHEITGFEFLGIESSPNNTCYRNKMEFTFGNEMKD 138 Query: 58 LYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRL---------------EPLLRA 102 + + + I + G +LI+ I+++ + LR Sbjct: 139 GPLTIGMHKKGRHIDI-LTVDGCMLIDQDFIKILTATEEFFRAEGLPYYRGNDHKGYLRH 197 Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDA------LHARKYQIQLIGRAN 156 + + T++ IVT D ++ + L LH + + + Sbjct: 198 LVVRKGIKTNEMMVMIVTSTQLDYDMDKYKNMLLGLDLDADLASVLHCLNDNLADAVKCD 257 Query: 157 KTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-E 215 + ++ RD++ E L L ++ SF Q N + + +L + Sbjct: 258 ELRVLHGRDHIYEELL----GLRFKISPFSFFQTNTLGAEKLYSMAREFVGDYKDKVLYD 313 Query: 216 LYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275 LY G G VL++ +V +EI + +VEAA N N + + + + + +++ Sbjct: 314 LYSGTGTIGQVLSQKARKVYGIEIVEEAVEAANENAKLNGLTHCEFIAGDVAKTVNSLKE 373 Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLS 333 R I VDPPR G+ V + + I+YISCNP +L DL Sbjct: 374 ---------------RPDIIIVDPPRPGIHKDAVRDISKFNAEEIIYISCNPKTLVVDLQ 418 Query: 334 ILST-THTIERLALFDQFPYTRHMECGVLLVRKP 366 + + ++++ D FP T H E VLL RK Sbjct: 419 GFESYGYEVKKVRCMDMFPNTPHCETVVLLQRKD 452 >gi|157149945|ref|YP_001449932.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus gordonii str. Challis substr. CH1] gi|157074739|gb|ABV09422.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus gordonii str. Challis substr. CH1] Length = 454 Score = 253 bits (646), Expect = 3e-65, Method: Composition-based stats. Identities = 79/392 (20%), Positives = 149/392 (38%), Gaps = 46/392 (11%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54 ++ Y +QL K D LRQ + F + I EP++YR + +F Sbjct: 79 GCQIMHLHYNKQLEFKEDLLRQALKKFAPVGYENYEIRPTIGMQEPLYYRAKLQFQTRKY 138 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIE---MMATIRLEPLLRAKLFQIDYL- 110 D++ ++ Q + + + + + ++ + +++ RL K + + Sbjct: 139 KDEVKAGLYAQNSHYLVSLKNCLVQDKVTQQIINKVARLLSKYRLPIYDERKTAGVRTVM 198 Query: 111 ---TSQSDQAIVTLIYHRLLD---------DAWRECAIRLRDALHARKYQIQLIGRANKT 158 ++ Q + + R LD + E + ++ +I +KT Sbjct: 199 IRRARKTGQVQMIFVTGRKLDFSPVVRDLVAEFPELETVAVNYHTSKSSEI----YGDKT 254 Query: 159 KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELY 217 +I + E + + +F Q N + E V A + L++ Y Sbjct: 255 EIIWGEKAIQEGVL----DYEFSLSPRAFYQLNPEQTEVLYGEAVKALDVTEEDHLIDAY 310 Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277 CG G A+ + ++I ++E A+ N +N +++E E Sbjct: 311 CGVGTIGFAFAKRVKSLRGMDIIPEAIEDAKRNAKRMGFDNTLYEAGTAEEIIPRWYAE- 369 Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL 335 YR + VDPPR+GLDD + + A ++Y+SCN +L RDL L Sbjct: 370 -----------GYRADALIVDPPRTGLDDKLLETIVRYAPEKMVYVSCNVSTLARDLVKL 418 Query: 336 STTHTIERLALFDQFPYTRHMECGVLLVRKPS 367 S + + + D FP+T E V L ++ S Sbjct: 419 SRVYDVHYIQSVDMFPHTARTEAVVKLSKRES 450 >gi|295101716|emb|CBK99261.1| 23S rRNA m(5)U-1939 methyltransferase [Faecalibacterium prausnitzii L2-6] Length = 548 Score = 253 bits (645), Expect = 4e-65, Method: Composition-based stats. Identities = 78/393 (19%), Positives = 139/393 (35%), Gaps = 37/393 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPI----HYRMRAEFHIWHDGDD 57 +L Y +L K + + ++ + + P YR + +F + D + Sbjct: 82 GCSLRHMDYAAELRSKQESVADAFRRIGGLDVPVLDALPSPEVDRYRNKVQFPVGRDKNG 141 Query: 58 -LYHIMFDQQTKERMRIDYFMPGSLLINALMIEM-----------MATIRLEPLLRAKLF 105 + +T + ++N + + + L+R Sbjct: 142 APCIGFYAGRTHRIVPCPDCRLQPGVLNDIGNALCSFFAAHGIQPYDEESGKGLVRHIFL 201 Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD 165 + + S Q +V L+ R E LR+ + + A KT + L + Sbjct: 202 RRG---THSGQIMVCLVCTRPKFPHSEELVTALREQFSDIASVLINVN-AKKTNVILGEE 257 Query: 166 ----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGN 220 Y + + R SF Q N + + D+L +LYCG Sbjct: 258 TVSLYGPGYIEDTLCGVPVRLGPLSFYQVNTLAAERLYGIAAEYAQLEPSDVLLDLYCGM 317 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G L +A ++ VEI ++++A+ N A V S+ F + Sbjct: 318 GTIGLSMADRCRELIGVEIVPEAIDSAKANAARMG----DAVAAKSRFFCADAGQAAAR- 372 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILST- 337 + R I +DPPR G D+ T+ V ++Y+SCN + RD + L Sbjct: 373 ----LAAEGLRPDVIMLDPPRKGCDETTLSAVAQMSPRRVVYVSCNSSTAARDAAWLEEH 428 Query: 338 THTIERLALFDQFPYTRHMECGVLLVRKPSGWH 370 + E++ D FP TRH+E VLL + + H Sbjct: 429 GYHAEKVQPVDLFPRTRHVETVVLLSKLNTKQH 461 >gi|237743303|ref|ZP_04573784.1| tRNA (Uracil-5-)-methyltransferase [Fusobacterium sp. 7_1] gi|229433082|gb|EEO43294.1| tRNA (Uracil-5-)-methyltransferase [Fusobacterium sp. 7_1] Length = 451 Score = 253 bits (645), Expect = 5e-65, Method: Composition-based stats. Identities = 75/385 (19%), Positives = 159/385 (41%), Gaps = 34/385 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEP-IHYRMRAEFHIWHDGD 56 + +YE QL K + ++M + + SE +YR + + Sbjct: 80 GCDFAMLKYESQLKYKKLMVEEVMRKIAGLDNIQINDVLASEDIYNYRNKIIEPFSVYDN 139 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-------LRAKLFQIDY 109 + F +++ E +D + S L N ++ + + + + L I Sbjct: 140 KIITGFFKRKSHEVFEVDENILNSKLGNKIIKGLKEILNKNKISVYNENTHKGLLRNIMI 199 Query: 110 LTSQSDQAIVTLIYHR-LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR---- 164 T+ +++A+V LI + + + ++ +LR+ + K I + + KT + Sbjct: 200 RTNSNNEAMVVLIINSNKITENIKKLLFKLRENISEIK-SIYISLNSKKTNTVIGEKNIL 258 Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNF 223 Y ++ + + + SF Q N + + ++ I +++ Y G G Sbjct: 259 IYGEKSIKENINGIEFHISPTSFFQINVKQAKRLYDIAISFFDDIDDKYIVDAYSGTGTI 318 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 +++++ +V A+EI K + E N + N++ + + ++ L Sbjct: 319 GMIMSKKAKKVYAIEIVKSASEDGEKTAKENGIENIEFINGAVEK------------ELV 366 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST-THT 340 + ++ + TI DP R GLD + + V ++YISCNP + RD+ + S + Sbjct: 367 KLINNNQKIDTIIFDPSRKGLDASIIDKVAELNLKEVVYISCNPSTFARDVKLFSEKGYV 426 Query: 341 IERLALFDQFPYTRHMECGVLLVRK 365 +++L D FP T H+EC L+V++ Sbjct: 427 LKKLQAVDMFPQTSHIECVGLIVKE 451 >gi|125624135|ref|YP_001032618.1| putative RNA methyltransferase [Lactococcus lactis subsp. cremoris MG1363] gi|124492943|emb|CAL97906.1| putative RNA methyltransferase [Lactococcus lactis subsp. cremoris MG1363] gi|300070909|gb|ADJ60309.1| putative RNA methyltransferase [Lactococcus lactis subsp. cremoris NZ9000] Length = 456 Score = 252 bits (644), Expect = 5e-65, Method: Composition-based stats. Identities = 71/383 (18%), Positives = 143/383 (37%), Gaps = 45/383 (11%) Query: 10 YEQQLAEKVDRLRQMMLAF----QVPNLQIFRS-EPIHYRMRAEFHIWHDGDDLYHIMFD 64 Y +Q+ K ++ ++ P + S + I YR +A+ + L + Sbjct: 92 YNEQVKFKQKQVVDILRKTAGKEDFPVSPVIESIKTIKYRNKAQIPVQMVNGILTTGFYR 151 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKLFQIDYLTSQ 113 + + + ++ F I+A+++ + R + LR + + + TS+ Sbjct: 152 KNSHSLIPVEDFYIQHPEIDAVVLFLRDEFRKINLQAYDEKTRKGWLRNIVVRRGFHTSE 211 Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKT-------KICLDRDY 166 ++V + + L + +L + K I + + +D+ Sbjct: 212 MMVSLV--VTSKKLPENVDLVIDKLVEHFTNIKSVQLNINNGTGSFILGKEFVLLYGKDF 269 Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSL 225 + + + Y+ +F Q N + E + GD +++ Y G G + Sbjct: 270 ITDLMLDK----TYQISAPAFYQVNTPQAEKLYETAFEFAELKPGDIVIDAYSGIGTIGI 325 Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285 +A V +E+ +VE A+ N N + N ++++ E Sbjct: 326 SMADRVAEVYGMEVVPAAVENAKRNAQLNELENTHYEVGTAEKIMPKWLDE--------- 376 Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILS-TTHTIE 342 + IFVDPPR GLD+ + A I+YISCNP + RD+ + ++ Sbjct: 377 ---GIKPDVIFVDPPRKGLDETFIKSATATNPRRIVYISCNPATFARDVVRFENEGYILD 433 Query: 343 RLALFDQFPYTRHMECGVLLVRK 365 ++ D FP T H+E +K Sbjct: 434 KVQPVDLFPQTHHIELVARFNKK 456 >gi|330828283|ref|YP_004391235.1| 23S rRNA (Uracil-5-)-methyltransferase RumA [Aeromonas veronii B565] gi|328803419|gb|AEB48618.1| 23S rRNA (Uracil-5-)-methyltransferase RumA [Aeromonas veronii B565] Length = 450 Score = 252 bits (644), Expect = 6e-65, Method: Composition-based stats. Identities = 62/383 (16%), Positives = 133/383 (34%), Gaps = 37/383 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWHDGDD 57 + Y QL K ++ + + + + P YR +A++ + Sbjct: 79 GCQVRPLAYPAQLKLKQALVQSALEQVGLGDTPVKDILGMESPFAYRNKAQYAVRGCDAG 138 Query: 58 LYHIMFDQQTKERMRIDYFMPGSLL-----------INALMIEMMATIRLEPLLRAKLFQ 106 + + + + + D L + I + +R + + Sbjct: 139 AEIGFYRKHSHDLITADDCAVQDPLHVELNARVRNWMREHNIAAYDEVNHSGCVRNLMTR 198 Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWRECAIRL--RDALHARKYQIQLIGRANKTKICLDR 164 + + + +VTL + L + + ++ L Sbjct: 199 KGFKSGELMVVLVTLGEALPFEAELLAALSDLPVTTLVQNINDERTNRILGATNRVLLGE 258 Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNF 223 + +++ L + SF Q N + L + + + ++YCG G Sbjct: 259 GVIRDKIH----ELEFEISPLSFFQNNPTQTDVLYSSALEYAELTGNETVFDIYCGIGTI 314 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 SL LA +V+ +E + ++ AR N A N + + + +++ + Sbjct: 315 SLFLAGKAAKVVGIESVESAISDARRNAALNGIEHTEFHVGKAEQL------------MP 362 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STTHT 340 ++ + +DPPR G D A + + A ++Y+SCNP +L RDL+ L Sbjct: 363 ELHAQGVTADVVVMDPPRKGCDKAVLQTLVAMAPRRLVYVSCNPQTLARDLAWLVKQGFV 422 Query: 341 IERLALFDQFPYTRHMECGVLLV 363 ++ + D FP++ H+E L Sbjct: 423 LDEVQPVDMFPHSMHVEAVARLS 445 >gi|116512081|ref|YP_809297.1| tRNA (uracil-5-)-methyltransferase related enzyme [Lactococcus lactis subsp. cremoris SK11] gi|116107735|gb|ABJ72875.1| tRNA (uracil-5-)-methyltransferase related enzyme [Lactococcus lactis subsp. cremoris SK11] Length = 456 Score = 252 bits (644), Expect = 6e-65, Method: Composition-based stats. Identities = 72/383 (18%), Positives = 143/383 (37%), Gaps = 45/383 (11%) Query: 10 YEQQLAEKVDRLRQMMLAF----QVPNLQIFRS-EPIHYRMRAEFHIWHDGDDLYHIMFD 64 Y +Q+ K ++ ++ P + S + I YR +A+ I L + Sbjct: 92 YNEQVKFKQKQVVDILRKTAGKEDFPVSPVIESIKTIKYRNKAQIPIQMVNGILTTGFYR 151 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKLFQIDYLTSQ 113 + + + ++ F I+A+++ + R + LR + + + TS+ Sbjct: 152 KNSHSLIPVEDFYIQHPEIDAVVLFLRDEFRKINLQAYDEKTRKGWLRNIVVRRGFHTSE 211 Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKT-------KICLDRDY 166 ++V + + L + +L + K I + + +D+ Sbjct: 212 MMVSLV--VTSKKLPENVDLVIDKLVEHFTNIKSVQLNINNGTGSFILGKEFVLLYGKDF 269 Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSL 225 + + + Y+ +F Q N + E + GD +++ Y G G + Sbjct: 270 ITDLMLDK----TYQISAPAFYQVNTPQAEKLYETAFEFAELKPGDIVIDAYSGIGTIGI 325 Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285 +A V +E+ +VE A+ N N + N ++++ E Sbjct: 326 SMADRVAEVYGMEVVPAAVENAKRNAQLNELENTHYEVGTAEKIMPKWLDE--------- 376 Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILS-TTHTIE 342 + IFVDPPR GLD+ + A I+YISCNP + RD+ + ++ Sbjct: 377 ---GIKPDVIFVDPPRKGLDETFIKSATATNPRRIVYISCNPATFARDVVRFENEGYILD 433 Query: 343 RLALFDQFPYTRHMECGVLLVRK 365 ++ D FP T H+E +K Sbjct: 434 KVQPVDLFPQTHHIELVARFNKK 456 >gi|291531341|emb|CBK96926.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Eubacterium siraeum 70/3] Length = 449 Score = 252 bits (644), Expect = 6e-65, Method: Composition-based stats. Identities = 71/390 (18%), Positives = 132/390 (33%), Gaps = 48/390 (12%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFR----SEPIHYRMRAEFHIWHDGDD 57 +L YE QL K ++ + + + YR + + I D D Sbjct: 79 GCSLRHISYEAQLRAKEQFVKDAFTRIGGLSPEFLPIIRNTNINGYRNKLQIPIGTDKDG 138 Query: 58 L-YHIMFDQQTKERMRIDYFMPGS-----------LLINALMIEMMATIRLEPLLRAKLF 105 + + + + + + L + + +LR Sbjct: 139 NLIAGFYAFHSHRIVPCEKCLLQPDIFSKITADFLKISTGLNLTAYDETMRKGILRHLYL 198 Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD 165 + Y + + IV + + RL + + + T + L Sbjct: 199 RKGYYSGEICLCIVVAKNV----PEIKILSDRLLEKYPEIVSSVINVNN-RDTNVILG-- 251 Query: 166 YVDERLTVAGRTLI--------YRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELY 217 DE + + + I +F Q N + + +L+LY Sbjct: 252 --DEEIVLTSKNYICDIMCKNAVNIAPKAFYQVNTPCAEQLYSSACDFAEPKGKTVLDLY 309 Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277 CG G L +AR +++ VEI ++E A+ N AN + N + + + E + + Sbjct: 310 CGAGTIGLSMARTAKKIIGVEIVPEAIENAKQNALANGITNCEFICADAAEAARILHS-- 367 Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSIL 335 + R I VDPPR G + A+ P I+ +SCN + RD + Sbjct: 368 ----------RNLRPDVIMVDPPRKGCGRDACEQIAAFSAPRIVMVSCNAATAARDCAYF 417 Query: 336 ST-THTIERLALFDQFPYTRHMECGVLLVR 364 + ++ ++ D F T H+EC VLL + Sbjct: 418 AELGYSTDKCVAVDMFSGTNHVECVVLLTK 447 >gi|332199219|gb|EGJ13297.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae GA41317] Length = 458 Score = 252 bits (644), Expect = 6e-65, Method: Composition-based stats. Identities = 77/384 (20%), Positives = 144/384 (37%), Gaps = 40/384 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54 ++ Y++QL K D L Q + F + I EP +YR + +F Sbjct: 81 GCQIMHLHYDKQLEFKTDLLHQALKKFAPAGYENYEIRPTIGMQEPKYYRAKLQFQTRKF 140 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----------LRAKL 104 + + ++ Q + + + + + + + + +R + Sbjct: 141 KNQVKAGLYAQNSHYLVELKDCLVQDKETQVIANRLAELLTYHQIPITDERKVLGVRTIM 200 Query: 105 FQIDYLTSQSDQAIVT---LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161 + T Q IVT L +L+ + ++ + A++ + I KT+I Sbjct: 201 VRRARKTGQVQIIIVTNRQLNLTQLVKELVKDFPEVVTVAVNTNTAKTSEI-YGEKTEII 259 Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGN 220 ++ + E + + +F Q N + E V A + L++ YCG Sbjct: 260 WGQESIQEGVL----NYEFSLSPRAFYQLNPEQTEVLYSEAVKALDVDKEDHLIDAYCGV 315 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G A+ + ++I ++E A+ N +N +++E +E Sbjct: 316 GTIGFAFAKKVKTLRGMDIIPEAIEDAKRNAKRMGFDNTHYEAGTAEEIIPRWYKE---- 371 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTT 338 YR + VDPPR+GLDD + + Y ++YISCN +L RDL L Sbjct: 372 --------GYRADALIVDPPRTGLDDKLLDTILTYVPEKMVYISCNVSTLARDLVRLVEV 423 Query: 339 HTIERLALFDQFPYTRHMECGVLL 362 + + + D FP+T E V L Sbjct: 424 YDLHYIQSVDMFPHTARTEAVVKL 447 >gi|323484926|ref|ZP_08090281.1| hypothetical protein HMPREF9474_02032 [Clostridium symbiosum WAL-14163] gi|323401807|gb|EGA94150.1| hypothetical protein HMPREF9474_02032 [Clostridium symbiosum WAL-14163] Length = 457 Score = 252 bits (644), Expect = 6e-65, Method: Composition-based stats. Identities = 90/397 (22%), Positives = 158/397 (39%), Gaps = 52/397 (13%) Query: 2 SGTLL-IDQYEQQLAEKVDRLRQMMLAFQVP-NLQIFRSEPIH--YRMRAEFHIWHD--- 54 G L YE QL K +++++++ + + P+ YR + EF + Sbjct: 79 GGCLYQTIPYETQLEIKKEQVKELLDGVCGEYEFEGIKGSPLADCYRNKMEFSFGDEVKD 138 Query: 55 -----GDDLYHIMFDQQTKERMRIDYFMPGSLLIN------ALMIEMMATIRLEPLLRAK 103 G +D T RI + +L+ + ++ LR Sbjct: 139 GPLALGMHKRGSFYDVVTTGECRIVHKDFCDILLCTKAYFEEKEVGFYKKMQHTGYLRHL 198 Query: 104 LFQIDYLTSQSDQAIVTLIY-----HRLLDDAWRECAI------RLRDALHARKYQIQLI 152 L + T + ++T + L W E + ++ LH + + Sbjct: 199 LVRRAVKTGEILLDLITTTQIGVEEEKELLAGWLERLLVLPLEGKMAGILHTKNDSLADA 258 Query: 153 GRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD 212 + T++ +DY E L L +R SF Q N+ + E +G Sbjct: 259 VKDEGTEVLYGKDYFFEELL----GLKFRISPFSFFQTNSLGAEVLYEKTREYVGETKGK 314 Query: 213 LL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271 ++ +LY G G + +LA ++V+ VEI K +VEAA+ N N ++N + + Sbjct: 315 VVFDLYSGTGTIAQILAPVAEKVVGVEIVKEAVEAAKENARLNGLDNCEFIAGDV----- 369 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLC 329 LK +D + + + I +DPPR G+ + + + ++Y+SC P SL Sbjct: 370 ----------LKVVDELTDKPELIVLDPPRDGIHPKAIEKIIGFGVERMVYVSCKPTSLA 419 Query: 330 RDLSILST-THTIERLALFDQFPYTRHMECGVLLVRK 365 RDL IL + +E+ D FP T ++E VLL RK Sbjct: 420 RDLVILQENGYRVEKGCCVDMFPGTANVETVVLLGRK 456 >gi|331265805|ref|YP_004325435.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus oralis Uo5] gi|326682477|emb|CBZ00094.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus oralis Uo5] Length = 453 Score = 252 bits (644), Expect = 6e-65, Method: Composition-based stats. Identities = 77/387 (19%), Positives = 146/387 (37%), Gaps = 40/387 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54 ++ Y++QL K D L Q + F + I EP +YR + +F Sbjct: 81 GCQIMHLHYDKQLEFKTDLLHQALKKFAPTGYENYEIRPTIGMQEPKYYRAKLQFQTRKF 140 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----------LRAKL 104 + + ++ Q + + + + + + + + +R + Sbjct: 141 NNQVKVGLYAQNSHYLVELKDCLVQDKETQVIANRLAELLTYHQIPITDERKTLGVRTIM 200 Query: 105 FQIDYLTSQSDQAIVT---LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161 + T Q +VT L ++L+ D + + A++ + I KT+I Sbjct: 201 VRRARKTGQVQIIVVTNRQLNLNQLVKDLVNDFPEVVTVAVNTNIAKTSEI-YGEKTEII 259 Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGN 220 ++ + E + + +F Q N + E V A + L++ YCG Sbjct: 260 WGQESIQEGVL----DYEFSLSPRAFYQLNPEQTEILYSEAVKALDVSKEDHLIDAYCGV 315 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G A + ++I ++E A+ N +N +++E +E Sbjct: 316 GTIGFAFATKVKSLRGMDIIPEAIEDAKRNAKKMGFDNTHYEAGTAEEIIPRWYQE---- 371 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTT 338 YR + VDPPR+GLD + + Y ++Y+SCN +L RDL L Sbjct: 372 --------GYRANALIVDPPRTGLDGKLLDTILTYVPEKMVYVSCNVSTLARDLVKLVKV 423 Query: 339 HTIERLALFDQFPYTRHMECGVLLVRK 365 + ++ + D FP+T E V LV+K Sbjct: 424 YDLQYIQSVDMFPHTARTEAVVKLVKK 450 >gi|187932429|ref|YP_001884796.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum B str. Eklund 17B] gi|187720582|gb|ACD21803.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum B str. Eklund 17B] Length = 450 Score = 252 bits (643), Expect = 7e-65, Method: Composition-based stats. Identities = 83/391 (21%), Positives = 146/391 (37%), Gaps = 47/391 (12%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWHD--- 54 + YE+QL D ++ + V + + SE YR + EF + Sbjct: 79 GCSSQTLSYEKQLQVLEDEIKDLFKEADVTTGEFLGVLGSSEQWEYRNKMEFTFGDEEKG 138 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGSLLINAL-----------MIEMMATIRLEPLLRAK 103 GD + ++ M +D+ + + ++ E LR Sbjct: 139 GDLSIGMHMRGKSFGIMTVDHCKIVDEDYRRIIRLTADYFGKQDLPYYRVMKREGYLRHL 198 Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAI------RLRDALHARKYQIQLIGRANK 157 + + T + +VT + E L LH K Sbjct: 199 VIRKAQNTGEILVNLVTTTQIDFDLSEYVELLKSQDYKGTLVSILHTENNSFSDAVIPEK 258 Query: 158 TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-EL 216 + RDY+ E+L L ++ SF Q N + V + ++ +L Sbjct: 259 VNVLYGRDYIQEKLL----GLDFKISPFSFFQTNTKGAESLYSLVRDFMGSSENKVVFDL 314 Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276 YCG G ++A + +V+ +E+ + +VEAA+ N N +NN + + E + ++ Sbjct: 315 YCGTGTIGQIVAPNAKKVVGIELIEEAVEAAKENAKLNGLNNCEFLAGDVAEIIKTVK-- 372 Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSI 334 + I +DPPRSG+ + V + P I+Y+SCNP +L DL + Sbjct: 373 -------------DKPDIIILDPPRSGVHPKALDYVIKFNAPEIVYVSCNPKTLVTDLKV 419 Query: 335 L-STTHTIERLALFDQFPYTRHMECGVLLVR 364 L + I + + D FP T H E V L++ Sbjct: 420 LIERGYKIIQTQVKDMFPNTPHAETIVKLIK 450 >gi|328946804|gb|EGG40941.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis SK1087] Length = 456 Score = 252 bits (643), Expect = 7e-65, Method: Composition-based stats. Identities = 79/392 (20%), Positives = 147/392 (37%), Gaps = 46/392 (11%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54 ++ Y++QL K D LRQ + F + I EP++YR + +F Sbjct: 81 GCQIMHLHYDKQLEFKEDLLRQALKKFAPAGYENYEIRPTIGMQEPLYYRAKLQFQTRKF 140 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGSLL---INALMIEMMATIRLEPLLRAKLFQIDYL- 110 D++ ++ Q + + + + + I + ++ RL K + + Sbjct: 141 KDEVKAGLYAQNSHYLVSLKNCLVQDKVTQKIINKVARLLGKYRLPIYDERKTAGVRTVM 200 Query: 111 ---TSQSDQAIVTLIYHRLLD---------DAWRECAIRLRDALHARKYQIQLIGRANKT 158 ++ Q + + R LD + E + ++ +I +KT Sbjct: 201 IRRARKTGQVQMIFVTGRKLDFSPVVRDLVAEFPELETVAVNYHTSKSSEI----YGDKT 256 Query: 159 KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELY 217 +I + + E + + +F Q N + E V A + L++ Y Sbjct: 257 EIIWGEEAIQEGVL----DYEFSLSPRAFYQLNPEQTEVLYGEAVKALDVTKEDHLIDAY 312 Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277 CG G A+ + ++I ++E A+ N N +++E E Sbjct: 313 CGVGTIGFAFAKRVKSLRGMDIIPEAIEDAKRNAKRMGFGNTLYEAGTAEEIIPRWYAE- 371 Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL 335 YR + VDPPR+GLDD + + A ++Y+SCN +L RDL L Sbjct: 372 -----------GYRADALIVDPPRTGLDDKLLETIVRYAPEKMVYVSCNVSTLARDLVKL 420 Query: 336 STTHTIERLALFDQFPYTRHMECGVLLVRKPS 367 S + + + D F +T E V L ++ S Sbjct: 421 SQVYDVHYIQSVDMFSHTARTEAVVKLSKRDS 452 >gi|270292218|ref|ZP_06198433.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus sp. M143] gi|270279746|gb|EFA25588.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus sp. M143] Length = 456 Score = 252 bits (643), Expect = 8e-65, Method: Composition-based stats. Identities = 77/387 (19%), Positives = 147/387 (37%), Gaps = 40/387 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54 ++ Y++QL K + L Q + F + I EP +YR + +F Sbjct: 81 GCQIMHLHYDKQLEFKTNLLHQALKKFAPAGYESYEIRPTIGMQEPKYYRAKLQFQTRKF 140 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----------LRAKL 104 + + ++ Q + + + + + + + + +R + Sbjct: 141 NNQVKAGLYAQNSHYLVELKDCLVQDKETQVIANRLAELLTYHQIPITDERKTLGVRTIM 200 Query: 105 FQIDYLTSQSDQAIVT---LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161 + T Q IVT L +L+ D ++ + A++ + I KT+I Sbjct: 201 VRRARKTGQVQIIIVTNRQLNLTQLVKDLVKDFPEVVTVAVNTNTAKTSEI-YGEKTEII 259 Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGN 220 ++ + E + + +F Q N + E V A + L++ YCG Sbjct: 260 WGQESIQEGVL----DYEFSLSPRAFYQLNPEQTEILYSEAVKALDVSKEDHLIDAYCGV 315 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G A + ++I ++E A+ N +N +++E +E Sbjct: 316 GTIGFAFANKVKSLRGMDIIPEAIEDAKQNAQRMGFDNTHYEAGTAEEIIPRWYQE---- 371 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTT 338 YR + VDPPR+GLDD + + Y ++Y+SCN +L RDL L Sbjct: 372 --------GYRANALIVDPPRTGLDDKLLDTILTYVPEKMVYVSCNVSTLARDLVKLVKV 423 Query: 339 HTIERLALFDQFPYTRHMECGVLLVRK 365 + ++ + D FP+T E V L++K Sbjct: 424 YDLQYIQSVDMFPHTARTEAVVKLIKK 450 >gi|259502049|ref|ZP_05744951.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus antri DSM 16041] gi|259169962|gb|EEW54457.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus antri DSM 16041] Length = 474 Score = 252 bits (643), Expect = 8e-65, Method: Composition-based stats. Identities = 75/381 (19%), Positives = 130/381 (34%), Gaps = 41/381 (10%) Query: 10 YEQQLAEKVDRLRQMMLAFQV-------PNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIM 62 Y QQLA K + + FQ I E HYR +A+F + + + Sbjct: 109 YPQQLAFKRQVVLDSLEKFQPYGYRNYDVRQTIAAPEEYHYRNKAQFQVRMVDGHVAAGL 168 Query: 63 FDQQTKERMRIDYFMPG-----------SLLINALMIEMMATIRLEPLLRAKLFQIDYLT 111 + + + + + LI L I + +++ + + + T Sbjct: 169 YKPNSHDLVDMQECAVQMPRTMKVVRTVVQLIEDLQIPVYDEAHNSGIIKTIVVRESWTT 228 Query: 112 SQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYV 167 + +T L++ R L A + + + + + + + Sbjct: 229 GELQLTFITNTPKLVHKRPLLTAIAQQLPEVVSIMQNVNPGDTPLVWGEQMIHLAGKQTI 288 Query: 168 DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLV 226 E L L + SF Q N + E A + L++ Y G G L Sbjct: 289 TESLM----GLDFELSARSFLQLNPEQTEVLYEQAAEALELDREDTLIDAYAGIGTIGLA 344 Query: 227 LARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDID 286 LA V +EI +V A N N ++N ++E E Sbjct: 345 LAARVKAVRGMEIIPEAVADANANAQLNGISNAHYEVGKAEEVMPRWLAE---------- 394 Query: 287 IHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILSTTHTIERL 344 +F + VDPPR+GLDD + + Y+SC SL R+L L++ + ++ + Sbjct: 395 --GLQFDALVVDPPRTGLDDELIKQILKVKPRKFAYVSCGMASLARNLRRLTSVYHVDYI 452 Query: 345 ALFDQFPYTRHMECGVLLVRK 365 D P T E V L + Sbjct: 453 QPIDMMPQTARCEAVVKLSLR 473 >gi|37522703|ref|NP_926080.1| hypothetical protein gll3134 [Gloeobacter violaceus PCC 7421] gi|50401751|sp|Q7NGN4|Y3134_GLOVI RecName: Full=Uncharacterized RNA methyltransferase gll3134 gi|35213705|dbj|BAC91075.1| gll3134 [Gloeobacter violaceus PCC 7421] Length = 457 Score = 251 bits (642), Expect = 9e-65, Method: Composition-based stats. Identities = 83/381 (21%), Positives = 137/381 (35%), Gaps = 46/381 (12%) Query: 9 QYEQQLAEKVDRLRQMML---AFQVPNLQ--IFRSEPIHYRMRAEFHIWHDG-DDLYHIM 62 Y QL K ++R+ + F P ++ I + P YR ++ F I D + Sbjct: 97 DYPFQLEAKQRQVREALEHLGGFAEPPVEPVIAQPRPFGYRNKSTFPIGRDARGEPVIGY 156 Query: 63 FDQQTKERMRIDYFMPGS-----------LLINALMIEMMATIRLEPLLRAKLFQIDYLT 111 + + + + +D LI + LR +I T Sbjct: 157 YQKDSHRIVPLDACPVQDSRLDPLLAAARELIRTQGWSIYDEKHHRGALRHLGLRIGERT 216 Query: 112 SQSDQAIV----TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYV 167 Q V TL + A + L + +T+ +D++ Sbjct: 217 GQRLLTFVVNGQTLSGIKPAAQALMDRFADLVGVCLNTHTERGNTIFGPQTRCLAGQDFI 276 Query: 168 DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNFSLV 226 +E L +R +F Q + V A + +++ YCG G SL Sbjct: 277 EEVL----DGFRFRIEPTTFFQICTSQAEILARLVARGADATAEQTVVDAYCGIGTLSLP 332 Query: 227 LARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDID 286 LAR V+ +E SVE AR N N + N + + + + +R Sbjct: 333 LARAARAVVGIESHVRSVEQARQNARINGIENCRFLAGTVEALLPDLRA----------- 381 Query: 287 IHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCRDLSIL-STTHTIER 343 + VDPPR G D + ++ A P ++Y+SCNP +L RDL L + + + Sbjct: 382 ------DIVVVDPPRKGCDPEVLEAILHAVPMRVVYVSCNPATLARDLKRLVAGGYCLVG 435 Query: 344 LALFDQFPYTRHMECGVLLVR 364 + D F T H+EC L R Sbjct: 436 VQPVDLFAQTHHVECVATLER 456 >gi|188588342|ref|YP_001919973.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum E3 str. Alaska E43] gi|251777708|ref|ZP_04820628.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|188498623|gb|ACD51759.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum E3 str. Alaska E43] gi|243082023|gb|EES47913.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 450 Score = 251 bits (642), Expect = 9e-65, Method: Composition-based stats. Identities = 83/391 (21%), Positives = 146/391 (37%), Gaps = 47/391 (12%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWHD--- 54 + YE+QL D ++ + V + + SE YR + EF + Sbjct: 79 GCSSQTLSYEKQLQVLEDEIKDLFKEADVTTGEFLGVLGSSEQWEYRNKMEFTFGDEEKG 138 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGSLLINAL-----------MIEMMATIRLEPLLRAK 103 GD + ++ M +D+ + + ++ E LR Sbjct: 139 GDLSIGMHMRGKSFGIMTVDHCKIVDEDYRKIIRLTADYFGKQDLPYYRVMKREGYLRHL 198 Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAI------RLRDALHARKYQIQLIGRANK 157 + + T + +VT + E L LH K Sbjct: 199 VIRKAQNTGEILVNLVTTTQIDFDLSEYVELLKSQDYKGTLVSILHTENNSFSDAVIPEK 258 Query: 158 TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-EL 216 + RDY+ E+L L ++ SF Q N + V + ++ +L Sbjct: 259 VNVLYGRDYIQEKLL----GLNFKISPFSFFQTNTKGAESLYSLVRDFMGSSENKVVFDL 314 Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276 YCG G ++A + +V+ +E+ + +VEAA+ N N +NN + + E + ++ Sbjct: 315 YCGTGTIGQIVAPNAKKVVGIELIEEAVEAAKENAKLNGLNNCEFLAGDVAEIIKTVK-- 372 Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSI 334 + I +DPPRSG+ + V + P I+Y+SCNP +L DL + Sbjct: 373 -------------DKPDIIILDPPRSGVHPKALDYVIKFNAPEIIYVSCNPKTLVTDLKV 419 Query: 335 L-STTHTIERLALFDQFPYTRHMECGVLLVR 364 L + I + + D FP T H E V L++ Sbjct: 420 LVERGYKIIQTQVKDMFPNTPHAETIVKLIK 450 >gi|229918108|ref|YP_002886754.1| RNA methyltransferase, TrmA family [Exiguobacterium sp. AT1b] gi|229469537|gb|ACQ71309.1| RNA methyltransferase, TrmA family [Exiguobacterium sp. AT1b] Length = 458 Score = 251 bits (642), Expect = 1e-64, Method: Composition-based stats. Identities = 74/376 (19%), Positives = 141/376 (37%), Gaps = 41/376 (10%) Query: 13 QLAEKVDRLRQMMLAFQVPN-------LQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ 65 Q+ K + +R N I +P +YR +++F + ++ ++ Sbjct: 92 QMEYKEEIVRNAFRQKTKLNVDKSDIRPTIGMEDPWYYRNKSQFPLGTRRGEIVSGLYKP 151 Query: 66 QTKERMRIDYFMPG-----------SLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQS 114 + + I++ M ++N L I + R R + + Y T+ Sbjct: 152 NSNHLVPIEHCMVQQRDTTNINNAIVRILNELDIPVYDARRDTGYARTIVVRSGYNTNDV 211 Query: 115 DQAIVTLIYHRLLDDAWRECAIRLRDALH---ARKYQIQLIGRANKTKICLDRDYVDERL 171 +V D + + L + + + +T ++ +DERL Sbjct: 212 QVVLVVGHEDVPDLDELSDRIMELPNVVSFHININANRSGVIFGYRTVHIAGQEKMDERL 271 Query: 172 TVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGNGNFSLVLARH 230 + Y +F Q N M E V AA + +++ Y G G+ L LA + Sbjct: 272 ----DDVHYHLSPRAFFQLNPAQTEKMYREVVEAAGLTGEERVIDAYAGVGSIGLWLAPY 327 Query: 231 FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY 290 + +E+ +VE A ++ N N+V V ++ + ++ + Sbjct: 328 AKEIRGMEVVPEAVEDANDHMRENGYNHVTYVEGRAEHWIPRWVKD------------GW 375 Query: 291 RFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STTHTIERLALF 347 I VDPPR+G+D + + I+Y+SCNP +L RD L + + + + Sbjct: 376 IPDVIVVDPPRTGMDHQLINSIISSKTKRIVYVSCNPQTLARDADQLMKAGYKVNYVQPY 435 Query: 348 DQFPYTRHMECGVLLV 363 D FP T H+E V+ Sbjct: 436 DMFPQTSHVESVVVFE 451 >gi|323350973|ref|ZP_08086630.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis VMC66] gi|322122697|gb|EFX94406.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis VMC66] Length = 456 Score = 251 bits (642), Expect = 1e-64, Method: Composition-based stats. Identities = 79/392 (20%), Positives = 146/392 (37%), Gaps = 46/392 (11%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54 ++ Y++QL K D LRQ + F + I EP++YR + +F Sbjct: 81 GCQIMHLHYDKQLEFKEDLLRQALKKFAPAGYENYEIRPTIGMQEPLYYRAKLQFQTRKF 140 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGSLL---INALMIEMMATIRLEPLLRAKLFQIDYL- 110 D++ ++ Q + + + + + I + ++ RL K + + Sbjct: 141 KDEVKAGLYAQNSHYLVSLKNCLVQDKVTQKIINKVARLLGKYRLPIYDERKTAGVRTVM 200 Query: 111 ---TSQSDQAIVTLIYHRLLD---------DAWRECAIRLRDALHARKYQIQLIGRANKT 158 ++ Q + + R LD + E + ++ +I +KT Sbjct: 201 IRRARKTGQVQMIFVTGRKLDFSPVVRDLVAEFPELETVAVNYHTSKSSEI----YGDKT 256 Query: 159 KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELY 217 +I + E + + +F Q N + E V A + L++ Y Sbjct: 257 EIIWGEKDIQEGVL----DYEFSLSPRAFYQLNPEQTEVLYGEAVKALDVTKEDHLIDAY 312 Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277 CG G A+ + ++I ++E A+ N N +++E E Sbjct: 313 CGVGTIGFAFAKRVKSLRGMDIIPEAIEDAKRNAKRMGFTNTLYETGTAEEIIPRWYAE- 371 Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSIL 335 YR + VDPPR+GLDD + + Y ++Y+SCN +L RDL L Sbjct: 372 -----------GYRANALIVDPPRTGLDDKLLETIVRYTPEKMVYVSCNVSTLARDLVKL 420 Query: 336 STTHTIERLALFDQFPYTRHMECGVLLVRKPS 367 + + + D FP+T E V L ++ S Sbjct: 421 CQVYDVHYIQSVDMFPHTARTEAVVKLSKRDS 452 >gi|317498282|ref|ZP_07956581.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lachnospiraceae bacterium 5_1_63FAA] gi|316894491|gb|EFV16674.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lachnospiraceae bacterium 5_1_63FAA] Length = 454 Score = 251 bits (642), Expect = 1e-64, Method: Composition-based stats. Identities = 90/391 (23%), Positives = 147/391 (37%), Gaps = 48/391 (12%) Query: 2 SGTLL-IDQYEQQLAEKVDRLRQMMLAFQVPNL--QIFRSEPIH-YRMRAEFHIW--HDG 55 G YE QL K +R ++ ++ +I S +H YR + EF Sbjct: 81 GGCFYQTVSYENQLKIKEGMVRDLLKDHVNDDIWEEIKGSPKVHGYRNKMEFSFGDEVKD 140 Query: 56 DDLYHIMFDQQT-KERMRIDYFMPGSLLIN-----------ALMIEMMATIRLEPLLRAK 103 L M + T + + I N + + +R E R Sbjct: 141 GPLALGMHKKNTFHDIVNITDCQIVDNDYNLIVKCALNIAQQMELPFYHKMRHEGYFRHL 200 Query: 104 LFQIDYLTSQSDQAIVTLIYH----RLLDDAWRECAI--RLRDALHARKYQIQLIGRANK 157 + + + IVT L DA E + ++ LH + + +A+K Sbjct: 201 VVRRAESSGDILVNIVTTSQVEADLTKLRDALLELPLSGKIIGILHTTNDSLADVVQADK 260 Query: 158 TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-EL 216 I +DY E + L ++ SF Q N + + + ++ +L Sbjct: 261 IDILYGQDYFYEEIL----GLKFKISPFSFFQTNTLGAEVLYKTARDFVGETKDKVIFDL 316 Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276 Y G G + +LA +V+ VEI + +VEAA+ N N ++N + + Sbjct: 317 YSGTGTIAQMLAPVAKKVVGVEIVEEAVEAAKVNAELNGLDNCEFIAGDV---------- 366 Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ---AYPHILYISCNPDSLCRDLS 333 LK +D + I +DPPR G+ + + +LYISC P SL RDL Sbjct: 367 -----LKVVDELEDKPDFIVLDPPRDGIHPKAIQKIIDSYRCERMLYISCKPTSLARDLE 421 Query: 334 ILS-TTHTIERLALFDQFPYTRHMECGVLLV 363 IL+ + + + DQFP T H+E LL Sbjct: 422 ILADAGYKVIKATAVDQFPNTVHIETICLLE 452 >gi|167766442|ref|ZP_02438495.1| hypothetical protein CLOSS21_00948 [Clostridium sp. SS2/1] gi|167711851|gb|EDS22430.1| hypothetical protein CLOSS21_00948 [Clostridium sp. SS2/1] gi|291560880|emb|CBL39680.1| 23S rRNA m(5)U-1939 methyltransferase [butyrate-producing bacterium SSC/2] Length = 543 Score = 251 bits (641), Expect = 1e-64, Method: Composition-based stats. Identities = 87/393 (22%), Positives = 153/393 (38%), Gaps = 53/393 (13%) Query: 2 SGTLL-IDQYEQQLAEKVDRLRQMMLAFQVPNL--QIFRSEPIH-YRMRAEFHIW--HDG 55 G YE QL K +R ++ + ++ +I S +H YR + EF Sbjct: 79 GGCFYQTVSYENQLKIKEGMVRDLLKDYVNDDIWEEIKGSPKVHGYRNKMEFSFGDEVKD 138 Query: 56 DDLYHIMFDQQT-KERMRIDYFMPGSLLIN-----------ALMIEMMATIRLEPLLRAK 103 L M + T + + I N + + +R E R Sbjct: 139 GPLALGMHKKNTFHDIVNITDCQIVDNDYNLIVKCALNIAQQMELPFYHKMRHEGYFRHL 198 Query: 104 LFQ---------IDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGR 154 + + ++ +T+ +A +T + LL+ + ++ LH + + + Sbjct: 199 VVRRAESSGDILVNIVTTSQVEADLTKLRDTLLELP---LSGKIIGILHTTNDSLADVVQ 255 Query: 155 ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL 214 A+K I +DY E + L ++ SF Q N + + + ++ Sbjct: 256 ADKIDILYGQDYFYEEIL----GLKFKISPFSFFQTNTLGAEILYKTARDFVGETKDKVI 311 Query: 215 -ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273 +LY G G + +LA +V+ VEI + +VEAA+ N N ++N + + Sbjct: 312 FDLYSGTGTIAQMLAPVAKKVVGVEIVEEAVEAAKVNAELNGLDNCEFIAGDV------- 364 Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRD 331 LK +D + I +DPPR G+ + + ++YISC P SL RD Sbjct: 365 --------LKVVDELEDKPDFIVLDPPRDGIHPKAIQKIIDFGVEQMVYISCKPTSLARD 416 Query: 332 LSILS-TTHTIERLALFDQFPYTRHMECGVLLV 363 L + + ++R DQFP T H+E VLL Sbjct: 417 LEVFEAAGYKVKRATAVDQFPNTVHIETVVLLS 449 >gi|327461982|gb|EGF08311.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis SK1057] Length = 456 Score = 251 bits (641), Expect = 1e-64, Method: Composition-based stats. Identities = 78/392 (19%), Positives = 147/392 (37%), Gaps = 46/392 (11%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54 ++ Y++QL K D LRQ + F + I EP++YR + +F Sbjct: 81 GCQIMHLHYDKQLEFKEDLLRQALKKFAPAGYENYEIRPTIGMQEPLYYRAKLQFQTRKF 140 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIE---MMATIRLEPLLRAKLFQIDYL- 110 D++ ++ Q + + + + + ++ + ++ RL K + + Sbjct: 141 KDEVKAGLYAQNSHYLVSLKNCLVQDKVTQQIINKVARLLGKYRLPIYDERKTAGVRTVM 200 Query: 111 ---TSQSDQAIVTLIYHRLLD---------DAWRECAIRLRDALHARKYQIQLIGRANKT 158 ++ Q + + R LD + E + ++ +I +KT Sbjct: 201 IRRARKTGQVQMIFVTGRKLDFYPVVRDLVAEFPELETIAVNYHTSKSSEI----YGDKT 256 Query: 159 KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELY 217 +I + E + + +F Q N + E V A + L++ Y Sbjct: 257 EIIWGEKAIQEGVL----DYEFSLSPRAFYQLNPEQTEVLYGEAVKALDVTKEDHLIDAY 312 Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277 CG G A+ + ++I ++E A+ N N +++E E Sbjct: 313 CGVGTIGFAFAKRVKSLRGMDIIPEAIEDAKRNAKRMGFGNTLYEAGTAEEIIPRWYAE- 371 Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL 335 YR + VDPPR+GLDD + + A ++Y+SCN +L RDL L Sbjct: 372 -----------GYRADALIVDPPRTGLDDKLLETIVRYAPEKMVYVSCNVSTLARDLVKL 420 Query: 336 STTHTIERLALFDQFPYTRHMECGVLLVRKPS 367 S + + + D F +T E V L ++ S Sbjct: 421 SQVYDVHYIQSVDMFSHTARTEAVVKLSKRDS 452 >gi|320527936|ref|ZP_08029102.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Solobacterium moorei F0204] gi|320131562|gb|EFW24126.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Solobacterium moorei F0204] Length = 534 Score = 251 bits (641), Expect = 1e-64, Method: Composition-based stats. Identities = 76/385 (19%), Positives = 150/385 (38%), Gaps = 33/385 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI---FRSEP-IHYRMRAEFHIWHDGDD 57 L +Q K ++++ +++I + EP +YR + + + + + Sbjct: 80 GCQLQHMDSNEQNTFKENKVKDCFHKIAGMDVEIQPIIKVEPHWNYRNKVQIPVQCNDNK 139 Query: 58 LYHIMFDQQTKERMRIDYFMPGSLLINAL---MIEMMATIRLEPLLRAKLFQIDYLTSQS 114 + + + ++ + + L N L + + +R L + + T + Sbjct: 140 VEMGFYAPHSNRIVQYNVCHVQTDLSNELTNYFCKQFDMLACGKDVRHVLIKHAHNTGEV 199 Query: 115 DQAIVTLIYHRLLDDAWRECAI----RLRDALHARKYQIQLIGRANKTKICLDRDYVDER 170 A+V Y D + + +++ + + + K + R Y++E Sbjct: 200 MVALVVRKYPFHNSDILIKDVLVNYPQIKSLVAIVNKREDNVILDGKEILLAGRHYIEEE 259 Query: 171 LTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLA 228 L +R SF Q N + + G+ G+ L++LYCG G ++ A Sbjct: 260 LL----GCTFRISARSFYQINPYATKELYSKAIEL-AGLTGNETLIDLYCGTGTMGIIAA 314 Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288 + +V +EI ++ A N N+V N+K + + E K I Sbjct: 315 KQAKQVYGIEIVADAIRDANTNAENNNVTNIKFINADASEGA------------KQIIDA 362 Query: 289 SYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILS-TTHTIERLA 345 + + +DPPR G T+ + A ++Y+SC+P +L RD+ ILS + +E + Sbjct: 363 KIQADAMIIDPPRKGCSKDTIDAIVTIAPKKLVYVSCDPATLARDVKILSDNGYKLELVQ 422 Query: 346 LFDQFPYTRHMECGVLLVRKPSGWH 370 D FP T H+E LL + H Sbjct: 423 PVDLFPQTVHVETVALLSKLDVDKH 447 >gi|117620248|ref|YP_858149.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117561655|gb|ABK38603.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 450 Score = 251 bits (641), Expect = 1e-64, Method: Composition-based stats. Identities = 62/383 (16%), Positives = 132/383 (34%), Gaps = 37/383 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWHDGDD 57 + Y QL K + + + + + P YR +A++ + Sbjct: 79 GCQVRPLAYPAQLKLKQALVENALEQAGLGDTTVRTILGMDSPFAYRNKAQYAVRGCDAG 138 Query: 58 LYHIMFDQQTKERMRIDYFMPGSLL-----------INALMIEMMATIRLEPLLRAKLFQ 106 + + + + + D L + I + +R + + Sbjct: 139 AEIGFYRKHSHDLITADDCAVQDSLHVELNARVRNWMREHDIAAYDEVNHTGCVRNLMTR 198 Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWRECAIRL--RDALHARKYQIQLIGRANKTKICLDR 164 + + + +VTL + L + + ++ L Sbjct: 199 KGFKSGELMVVLVTLGEELPFEAELLASLSELPVTTLVQNINEERTNRILGATNRVLLGE 258 Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNF 223 + +++ L + SF Q N + L + + + ++YCG G Sbjct: 259 GVIRDKIH----ELEFEISPLSFFQNNPSQTDVLYSSALEYAELTGNETVFDIYCGIGTI 314 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 SL LA +V+ +E + ++ AR N A N + + + +++ + Sbjct: 315 SLFLAGKAAKVVGIESVESAISDARRNAALNGIEHTEFHVGKAEQL------------MP 362 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STTHT 340 ++ + +DPPR G D A + + A ++Y+SCNP +L RDL+ L Sbjct: 363 ELHAQGVTADVVVMDPPRKGCDKAVLQTLVAMAPRRLVYVSCNPQTLARDLAWLVKQGFV 422 Query: 341 IERLALFDQFPYTRHMECGVLLV 363 ++ + D FP++ H+E L Sbjct: 423 LDEVQPVDMFPHSMHVEAVARLS 445 >gi|153835467|ref|ZP_01988134.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio harveyi HY01] gi|148867978|gb|EDL67175.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio harveyi HY01] Length = 439 Score = 251 bits (641), Expect = 1e-64, Method: Composition-based stats. Identities = 85/372 (22%), Positives = 159/372 (42%), Gaps = 32/372 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRS---EPIHYRMRAEFHIWHDGD-- 56 L Y+QQL K LRQ+M F ++++ E + YR RA ++ D Sbjct: 90 GCDLQHLNYDQQLTHKQQTLRQLMRKFAGSDIELDAPVLGESLGYRRRARVSLFVDKKTR 149 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116 L+ +Q+K+ ++ + +N L+ E+ +T++ +L ++ + + Sbjct: 150 QLHFGFRKKQSKQIAQVTDCPVLAPELNVLLPEIYSTLKAFKK-PEQLGHVELVLGDNGP 208 Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGR 176 I TL + L + + L A+++Q L ++ D V+ + Sbjct: 209 CI-TLRHLNKLTEKETNTLVEL-----AKRHQASLYLMPETDQL----DLVEGEVPFYQE 258 Query: 177 -TLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRV 234 + N+F Q N +N M+ + + +L+L+CG GNFSL +A+ V Sbjct: 259 AGVTVPFTPNNFIQVNQAVNQKMVAQAVDWLDPKSDERVLDLFCGLGNFSLPIAKRAKHV 318 Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294 + VE VE A N + N +N+ + + ++ + + +F Sbjct: 319 VGVEGVAEMVEKAANNASLNQINSARFYHANLEQ------------DFEGQVWAAEQFDK 366 Query: 295 IFVDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPY 352 + +DP R+G + V I+Y+SCNP +L RD S+L + + +L + D FP+ Sbjct: 367 VLLDPARAGASGIIDQVSVLGARRIVYVSCNPATLARDSQSLLEQGYQLTKLGMLDMFPH 426 Query: 353 TRHMECGVLLVR 364 T H+E L + Sbjct: 427 TSHLESMALFEK 438 >gi|322420278|ref|YP_004199501.1| TrmA family RNA methyltransferase [Geobacter sp. M18] gi|320126665|gb|ADW14225.1| RNA methyltransferase, TrmA family [Geobacter sp. M18] Length = 566 Score = 251 bits (640), Expect = 2e-64, Method: Composition-based stats. Identities = 83/389 (21%), Positives = 145/389 (37%), Gaps = 39/389 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56 L+ +Y QLA K + + + + + I + + YR A+ + Sbjct: 194 GCGLMQMRYPAQLAWKKGLVTRQLRRYASLSEVTVHDTIGSPKELGYRNTAKLVVAGKHS 253 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINAL-----------MIEMMATIRLEPLLRAKLF 105 D ++ + T + + I LIN + +++ LLR + Sbjct: 254 DPVIGIYRRNTHDVLEIGECQLHHPLINKVVKAAKAGIKKGKVQIYNPKSEMGLLRYLVV 313 Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD 165 ++ S+Q +V + + A ++ A+ Q I + I +D Sbjct: 314 RV---AEPSNQVMVVFVTTDQGYNEMHHLAKFIQQAVPEVAVVAQNINTSTGNVIFGHKD 370 Query: 166 YVD---ERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNG 221 + L + +SF Q N+G + E V A + ++++YCG G Sbjct: 371 RSITKAQTLKAFIGDRSFNLSPHSFFQVNSGAARIIYEKVRELARLTGKERVIDVYCGIG 430 Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281 SL LA V+ +E + +V A N A N N + + E Sbjct: 431 GISLFLADQAREVVGIEFVEAAVADATLNAALNLARNCHFEAGDAVHLIDEIGEE----- 485 Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILST-T 338 I ++PPR G D+ + V A I+Y+SC+P++L RDL IL+ Sbjct: 486 --------GGADLIVLNPPRKGCDEKVLKSVAAIKPARIIYVSCSPETLARDLDILAQLG 537 Query: 339 HTIERLALFDQFPYTRHMECGVLLVRKPS 367 + + D FP T H+E LL R+ S Sbjct: 538 YKTLEVHPVDMFPQTVHVEDVALLERRES 566 >gi|328466504|gb|EGF37647.1| putative RNA methyltransferase [Listeria monocytogenes 1816] Length = 460 Score = 251 bits (640), Expect = 2e-64, Method: Composition-based stats. Identities = 66/364 (18%), Positives = 135/364 (37%), Gaps = 38/364 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWHDGDD 57 +L YE QLA K +++ + M N+ + P YR +++ + Sbjct: 84 GCSLQHLSYEGQLAFKRNQVEETMKRIGKLNVDVPETLGMENPWRYRNKSQVPVGFVNGK 143 Query: 58 LYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLFQ 106 L + +++ + + + + ++ E + +R + + Sbjct: 144 LTAGFYQKRSHAIIDMSTCLIHNEQGDFAVQKTREILAKYGTEPYDEQTGKGDIRHIMTR 203 Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWR---ECAIRLRDALHARKYQIQLIGRANKTKICLD 163 + T Q +VT + + L + + ++TK Sbjct: 204 FAHTTGQLMIVLVTTKERMPFKEEIVRELVEQLELTSIVQNINPHKTNVIFGDRTKTLWG 263 Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELYCGNGN 222 +D +++ + + + SF Q N + + + AA + +++ YCG G+ Sbjct: 264 KDIIEDTIH----GIRFAISARSFYQVNPIQTEVLYQQAIDAAELTGEETVIDAYCGIGS 319 Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282 SL LA+ V VEI +++ AR N N + N ++E A + Sbjct: 320 ISLCLAKKAKHVYGVEIVDQAIQDARANAELNELANTTFETGKAEEVIPAWYKA------ 373 Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILS-TTH 339 + VDPPR G D+ + + A ++Y+SCNP +L RD+ IL+ + Sbjct: 374 ------GIVADVLVVDPPRKGCDEKLLETILAMKPKKVVYVSCNPGTLARDMKILTDGGY 427 Query: 340 TIER 343 ++ Sbjct: 428 VAKK 431 >gi|110638905|ref|YP_679114.1| RNA methyltransferase [Cytophaga hutchinsonii ATCC 33406] gi|110281586|gb|ABG59772.1| 23S rRNA m(5)U-1939 methyltransferase [Cytophaga hutchinsonii ATCC 33406] Length = 479 Score = 250 bits (639), Expect = 2e-64, Method: Composition-based stats. Identities = 77/400 (19%), Positives = 144/400 (36%), Gaps = 52/400 (13%) Query: 2 SGTLLIDQYEQQLAEKVDRLR---QMMLAFQVPN--LQIFRSEPIHYRMRA--------- 47 L Y QL K +++ + + ++P + + YR + Sbjct: 82 GCKLQHIDYSTQLHFKQKQVKDNLERLGKIEIPEIMPIVGSGKTYEYRNKLDFTFSNKRW 141 Query: 48 ----EFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLL--- 100 E + HD + + I N++ +E+ A L Sbjct: 142 LLEEEMSLEHDTLYGLGFHLPGKFDRVIDISTCHLQPEPSNSIRLEVKAYALKHGLTFYN 201 Query: 101 ----RAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRAN 156 + + T+ + + +V + + A + L + I Sbjct: 202 VRAHEGLMRNLIIRTTNTHEVMVLVQFGEDNKPAIQGLLSHLITTFPQITSLVYFINTKK 261 Query: 157 -------KTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGI 209 + Y+ E + LI+R SF Q N+ L V G+ Sbjct: 262 NDTYSDLDVHVFHGPGYIQEEM----EGLIFRVGPKSFYQTNSDQAYE-LYKVTRDFAGL 316 Query: 210 QGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267 G+ + +LY G G + +A+ +V+ +E ++E A+ N N+++N K Sbjct: 317 TGNEVVYDLYTGTGTIANFVAKKAKQVIGIEYVADAIEDAKVNSKINNIDNTLFYAGDMK 376 Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNP 325 + K+ R I DPPR+G+ + + + P I+Y+SCNP Sbjct: 377 DVLN-----------KEFIAQHQRPDVIITDPPRAGMHEDVINTLLFIGAPKIVYVSCNP 425 Query: 326 DSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 + RDLS+L + + + R+ D FP+T H+E VLL ++ Sbjct: 426 ATQARDLSMLDSDYEVSRIQPVDMFPHTAHVENVVLLTKR 465 >gi|327389062|gb|EGE87408.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae GA04375] Length = 374 Score = 250 bits (639), Expect = 2e-64, Method: Composition-based stats. Identities = 77/383 (20%), Positives = 146/383 (38%), Gaps = 40/383 (10%) Query: 6 LIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHDGDDL 58 + Y++QL K D L Q + F + I EP +YR + +F + + Sbjct: 1 MHLHYDKQLEFKTDLLHQALKKFAPAGYENYEIRPTIGMQEPKYYRAKLQFQTRKFKNQV 60 Query: 59 YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----------LRAKLFQID 108 ++ Q + + + + + + + + +R + + Sbjct: 61 KAGLYAQNSHYLVELKDCLVQDKETQVIANRLAELLTYHQIPITDERKVLGVRTIMVRRA 120 Query: 109 YLTSQSDQAIVT---LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD 165 T Q IVT L +L+ + ++ + A++ + I KT+I ++ Sbjct: 121 RKTGQVQIIIVTNRQLNLTQLVKELVKDFPEVVTVAVNTNTAKTSEI-YGEKTEIIWGQE 179 Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGNGNFS 224 + E + + +F Q N + E V A + L++ YCG G Sbjct: 180 SIQEGVL----NYEFSLSPRAFYQLNPEQTEVLYSEAVKALDVDKEDHLIDAYCGVGTIG 235 Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284 A+ + ++I ++E A+ N +N +++E +E Sbjct: 236 FAFAKKVKTLRGMDIIPEAIEDAKRNAKRMGFDNTHYEAGTAEEIIPRWYKE-------- 287 Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTTHTIE 342 YR + +DPPR+GLDD + + Y ++YISCN +L RDL L + + Sbjct: 288 ----GYRADALIIDPPRTGLDDKLLDTILTYVPEKMVYISCNVSTLARDLVRLVEVYDLH 343 Query: 343 RLALFDQFPYTRHMECGVLLVRK 365 + D FP+T E V L++K Sbjct: 344 YIQSVDMFPHTARTEAVVKLIKK 366 >gi|183603351|ref|ZP_02964368.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae CDC1087-00] gi|183569936|gb|EDT90464.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae CDC1087-00] Length = 367 Score = 250 bits (639), Expect = 2e-64, Method: Composition-based stats. Identities = 78/383 (20%), Positives = 146/383 (38%), Gaps = 40/383 (10%) Query: 6 LIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHDGDDL 58 + Y++QL K D L Q + F + I EP +YR + +F + + Sbjct: 1 MHLHYDKQLEFKTDLLHQALKKFAPAGYENYEIRPTIGMQEPKYYRAKLQFQTRKFKNQV 60 Query: 59 YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----------LRAKLFQID 108 ++ Q + + + + + + + + +R + + Sbjct: 61 KAGLYAQNSHYLVELKDCLVQDKETQVIANRLAELLTYHQIPITDERKVLGVRTIMVRRA 120 Query: 109 YLTSQSDQAIVT---LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD 165 T Q IVT L +L+ + ++ + A++ + I KT+I ++ Sbjct: 121 RKTGQVQIIIVTNRQLNLTQLVKELVKDFPEVVTVAVNTNTAKTSEI-YGEKTEIIWGQE 179 Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGNGNFS 224 + E + + +F Q N + E V A + L++ YCG G Sbjct: 180 SIQEGVL----NYEFSLSPRAFYQLNPEQTEVLYSEAVKALDVDKEDHLIDAYCGVGTIG 235 Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284 A+ + ++I ++E A+ N +N +++E +E Sbjct: 236 FAFAKKVKTLRGMDIIPEAIEDAKRNAKRMGFDNTHYEAGTAEEIIPRWYKE-------- 287 Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTTHTIE 342 YR + VDPPR+GLDD + + Y ++YISCN +L RDL L + + Sbjct: 288 ----GYRADALIVDPPRTGLDDKLLDTILTYVPEKMVYISCNVSTLARDLVRLVEVYDLH 343 Query: 343 RLALFDQFPYTRHMECGVLLVRK 365 + D FP+T E V L++K Sbjct: 344 YIQSVDMFPHTARTEAVVKLIKK 366 >gi|225568809|ref|ZP_03777834.1| hypothetical protein CLOHYLEM_04888 [Clostridium hylemonae DSM 15053] gi|225162308|gb|EEG74927.1| hypothetical protein CLOHYLEM_04888 [Clostridium hylemonae DSM 15053] Length = 460 Score = 250 bits (639), Expect = 3e-64, Method: Composition-based stats. Identities = 84/396 (21%), Positives = 142/396 (35%), Gaps = 51/396 (12%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL--QIFRSEPIH--YRMRAEFHIW--HDG 55 T YE+QL K +++ MM + + + P YR + EF + Sbjct: 81 GCTYQNLPYEEQLKLKESQVKSMMDEAVDGDYVWEGIKPSPARQEYRNKMEFSFGDEYKD 140 Query: 56 DDLYHIMFDQQT-KERMRIDYFMPGSLLINALMIEMMATIRLEPL-----------LRAK 103 L M + + + + + ++ + + L R Sbjct: 141 GPLALGMHKRGSFHDIVNVADCRIVDEDYRKILACTLDCAKKSGLPYYHRMKHTGFFRHL 200 Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAI----------RLRDALHARKYQIQLIG 153 L + T + IVT + +E ++ LH + + + Sbjct: 201 LVRKAVNTGEILIDIVTTTEYDFESGFGQEYWAGQLLDLPLDGKIAGILHTKNDSVADVV 260 Query: 154 RANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL 213 + T I +D E L + ++ SF Q N+ + E + + Sbjct: 261 KDEGTDIIYGQDCFYEELL----GMKFKITPFSFFQTNSLGAEVLYEMARTYIGDTKDKV 316 Query: 214 L-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + +LY G G + +LA RV+ VEI + +V AA+ N N ++N Sbjct: 317 IFDLYSGTGTIAQILAPVAKRVVGVEIVEEAVAAAKENAKLNGLDNCTFWSGDV------ 370 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCR 330 LK ID I +DPPR G+ + + ++YI+C P SL R Sbjct: 371 ---------LKVIDELGEVPDLIVIDPPRDGVHPKALEKITNFGVERMVYIACKPTSLAR 421 Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVRK 365 DL +L + +ER+ D FP T H+E VLL K Sbjct: 422 DLEMLQGRGYEVERMGCVDLFPGTVHVETVVLLSHK 457 >gi|294101799|ref|YP_003553657.1| RNA methyltransferase, TrmA family [Aminobacterium colombiense DSM 12261] gi|293616779|gb|ADE56933.1| RNA methyltransferase, TrmA family [Aminobacterium colombiense DSM 12261] Length = 464 Score = 250 bits (638), Expect = 3e-64, Method: Composition-based stats. Identities = 85/391 (21%), Positives = 148/391 (37%), Gaps = 48/391 (12%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAF------QVPNLQIFRSEPIHYRMRAEFHIWHDG 55 L Y++QL K + + + I + YR +A F + ++ Sbjct: 88 GCQLQHCSYDKQLEIKRTIVEEAFSRVAHIPVRNILAPCIASPKEWGYRNKASFPVRNNA 147 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGSLLINAL---MIEMMATIRLEP--------LLRAKL 104 F +++ + ID +N + I+ + I L P LLR + Sbjct: 148 GKTDIGFFRRRSHSIIPIDTCPVLEPALNHMLSYFIDSLECINLPPYDEKKHSGLLRHVI 207 Query: 105 FQIDYLTSQSDQAIVTL-----IYHRLLDDAWRECAI---RLRDALHARKYQIQLIGRAN 156 F+ + + +V + ++ W+ L + Sbjct: 208 FRCGSFSKELLACLVVRKSLSSSEMKRVEQQWQSFQFPEFSFVGILENKNISPGNTILGQ 267 Query: 157 KTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHM-LEWVLAATKGIQGDLLE 215 ++ R+++ E L + +F Q N+ + + QG LE Sbjct: 268 NSRSVQGREWLREFLNSKE----FHFDGTAFFQVNSYQAARLFTYSANCFSDKGQGRALE 323 Query: 216 LYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275 LY G G SL LA FD ++ VE +VEA R N+ N +NV +++ Sbjct: 324 LYSGVGALSLFLASKFDNLVTVEDWPSAVEAMRKNLELNDFHNVSPHTGRAEDV------ 377 Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLS 333 I F ++ +DPPRSG + + + + ILY++CNP +L RD++ Sbjct: 378 ---------IFHLDGPFNSVILDPPRSGCNRQVIQRILEWKPQQILYVACNPATLARDIA 428 Query: 334 IL-STTHTIERLALFDQFPYTRHMECGVLLV 363 +L + +E+L FD FP T H+EC LL Sbjct: 429 LLYEGGYRLEKLQPFDMFPQTVHVECVALLE 459 >gi|303265405|ref|ZP_07351310.1| RNA methyltransferase, TrmA family protein [Streptococcus pneumoniae BS397] gi|302645057|gb|EFL75299.1| RNA methyltransferase, TrmA family protein [Streptococcus pneumoniae BS397] Length = 431 Score = 250 bits (638), Expect = 3e-64, Method: Composition-based stats. Identities = 76/383 (19%), Positives = 143/383 (37%), Gaps = 40/383 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54 ++ Y++QL K D L Q + F + I EP +YR + +F Sbjct: 66 GCQIMHLHYDKQLEFKTDLLHQALKKFAPAGYENYEIRPTIGMQEPKYYRAKLQFQTRKF 125 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----------LRAKL 104 + + ++ Q + + + + + + + + +R + Sbjct: 126 KNQVKAGLYAQNSHYLVELKDCLVQDKETQVIANRLAELLTYHQIPITDERKVLGVRTIM 185 Query: 105 FQIDYLTSQSDQAIVT---LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161 + T Q IVT L +L+ + ++ + A++ + I KT+I Sbjct: 186 VRRARKTGQVQIIIVTNRQLNLTQLVKELVKDFPEVVTVAVNTNTAKTSEI-YGEKTEII 244 Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGN 220 ++ + E + + +F Q N + E V A + L++ YCG Sbjct: 245 WGQESIQEGVL----NYEFSLSPRAFYQLNPEQTEVLYSEAVKALDVDKENHLIDAYCGV 300 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G A+ + ++I ++E A+ N +N +++E +E Sbjct: 301 GTIGFAFAKKVKTLRGMDIIPEAIEDAKRNAKRMGFDNTHYEAGTAEEIIPRWYKE---- 356 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTT 338 YR + VDPPR+GLDD + + Y ++YISCN +L RDL L Sbjct: 357 --------GYRADALIVDPPRTGLDDKLLDTILTYVPEKMVYISCNVSTLARDLVRLVEV 408 Query: 339 HTIERLALFDQFPYTRHMECGVL 361 + + + D FP+T E V Sbjct: 409 YDLHYIQSVDMFPHTARTEAVVK 431 >gi|198274964|ref|ZP_03207496.1| hypothetical protein BACPLE_01123 [Bacteroides plebeius DSM 17135] gi|198272411|gb|EDY96680.1| hypothetical protein BACPLE_01123 [Bacteroides plebeius DSM 17135] Length = 472 Score = 250 bits (638), Expect = 3e-64, Method: Composition-based stats. Identities = 83/399 (20%), Positives = 146/399 (36%), Gaps = 59/399 (14%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPNLQIFRS-----EPIHYRMRAEFH------------- 50 YE+QL K ++ + L FR + YR + EF Sbjct: 91 SYEEQLKYKQKQVFDNLTRIGKVELPEFRPILGSEKTRFYRNKLEFTFSNKRWLTEEEVK 150 Query: 51 --IWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLE-------PLLR 101 + +D + + + ID + N + + Sbjct: 151 QDVKYDQMNAVGFHIPGAFDKVLAIDKCWLQDDISNQIRNAVRDYAYAHNFPFFDLRTQE 210 Query: 102 AKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQ-----LIGRAN 156 L I TS + + +V L ++ DD R + + QI + + N Sbjct: 211 GLLRNIMIRTSSTGELMVVL-QCKVTDDEGRRKMEEILQFMADSFPQITSLMYVINNKCN 269 Query: 157 KT------KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ 210 T ++ D++ E + L ++ SF Q N+ + L V G+ Sbjct: 270 DTIGDLDVEVFKGNDHIFEEM----EGLRFKVGPKSFYQTNSEQAYN-LYKVAREFAGLT 324 Query: 211 GD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268 G+ + +LY G G + +AR +V+ +E ++E A+ N A N ++N K+ Sbjct: 325 GNELVYDLYTGTGTIANFVARQARKVVGIEYVPEAIEDAKVNSALNGIDNTLFYAGDMKD 384 Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPD 326 D R I DPPR+G+ + + ++ A I+Y+SCNP Sbjct: 385 ILT-----------NDFIAEHGRPDVIITDPPRAGMHNDVIDVILAAEPKRIVYVSCNPA 433 Query: 327 SLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 + RDL +L + + + D FP+T H+E V L R+ Sbjct: 434 TQARDLQLLDGKYKVTAVQPVDMFPHTHHVENVVQLERR 472 >gi|303270015|ref|ZP_07355742.1| RNA methyltransferase, TrmA family protein [Streptococcus pneumoniae BS458] gi|302640448|gb|EFL70868.1| RNA methyltransferase, TrmA family protein [Streptococcus pneumoniae BS458] Length = 446 Score = 250 bits (638), Expect = 3e-64, Method: Composition-based stats. Identities = 76/383 (19%), Positives = 143/383 (37%), Gaps = 40/383 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54 ++ Y++QL K D L Q + F + I EP +YR + +F Sbjct: 81 GCQIMHLHYDKQLEFKTDLLHQALKKFAPAGYENYEIRPTIGMQEPKYYRAKLQFQTRKF 140 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----------LRAKL 104 + + ++ Q + + + + + + + + +R + Sbjct: 141 KNQVKAGLYAQNSHYLVELKDCLVQDKETQVIANRLAELLTYHQIPITDERKVLGVRTIM 200 Query: 105 FQIDYLTSQSDQAIVT---LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161 + T Q IVT L +L+ + ++ + A++ + I KT+I Sbjct: 201 VRRARKTGQVQIIIVTNRQLNLTQLVKELVKDFPEVVTVAVNTNTAKTSEI-YGEKTEII 259 Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGN 220 ++ + E + + +F Q N + E V A + L++ YCG Sbjct: 260 WGQESIQEGVL----NYEFSLSPRAFYQLNPEQTEVLYSEAVKALDVDKENHLIDAYCGV 315 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G A+ + ++I ++E A+ N +N +++E +E Sbjct: 316 GTIGFAFAKKVKTLRGMDIIPEAIEDAKRNAKRMGFDNTHYEAGTAEEIIPRWYKE---- 371 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTT 338 YR + VDPPR+GLDD + + Y ++YISCN +L RDL L Sbjct: 372 --------GYRADALIVDPPRTGLDDKLLDTILTYVPEKMVYISCNVSTLARDLVRLVEV 423 Query: 339 HTIERLALFDQFPYTRHMECGVL 361 + + + D FP+T E V Sbjct: 424 YDLHYIQSVDMFPHTARTEAVVK 446 >gi|153955290|ref|YP_001396055.1| RNA methyltransferase [Clostridium kluyveri DSM 555] gi|219855711|ref|YP_002472833.1| hypothetical protein CKR_2368 [Clostridium kluyveri NBRC 12016] gi|146348148|gb|EDK34684.1| Predicted RNA methyltransferase [Clostridium kluyveri DSM 555] gi|219569435|dbj|BAH07419.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 453 Score = 250 bits (638), Expect = 3e-64, Method: Composition-based stats. Identities = 76/392 (19%), Positives = 149/392 (38%), Gaps = 49/392 (12%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMM-----LAFQVPNLQIFRSEPIHYRMRAEFHIW---H 53 Y++Q+ K ++ + F+ ++ E YR + EF Sbjct: 79 GCVSQFIPYDKQIELKEQQVLDLFHSADIRDFKFLGIEK-SPEEFEYRNKMEFSFGDEEK 137 Query: 54 DGDDLYHIMFDQQTKERMRIDYFMPGSL---LINALMIEMMATIRL--------EPLLRA 102 DG+ + + + +D L+ +++ ++L LR Sbjct: 138 DGELTLGMHVKGKGFSIVNVDECKIVDKDFTLVLDRVVKYFRKMKLPYYRVRSHNGYLRN 197 Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAI------RLRDALHARKYQIQLIGRAN 156 + + T + IVT E +L +H + + + + Sbjct: 198 LVLRKGKNTGELLINIVTTSQIEFDFSEITEILKGLEYKGKLSGIVHTINDSLSDVVQID 257 Query: 157 KTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLE 215 K ++ RDY+ E + L ++ +F Q N+ + V + + + Sbjct: 258 KLEVLYGRDYIMEEIL----GLKFKISPKTFFQTNSKGAEKLYGIVKEFLGDVSLKTVFD 313 Query: 216 LYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275 LYCG G S ++A +V+ VE+ + +V++A N N + N K + + + + Sbjct: 314 LYCGTGTISQIVASSAKKVIGVELVEEAVKSANENACLNEIENCKFIAGDVAKVVKTLN- 372 Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLS 333 + I +DPPR G+ + + + I+Y+SCNP +L DL Sbjct: 373 --------------DKPDLIILDPPRPGIHPKALRQIIDFNVNEIIYVSCNPKTLVEDLK 418 Query: 334 IL-STTHTIERLALFDQFPYTRHMECGVLLVR 364 +L + I+++ L D FP+T H+EC L+ R Sbjct: 419 VLIDGGYRIDKVKLMDMFPHTSHVECVALMSR 450 >gi|167631004|ref|YP_001681503.1| 23S rRNA (uracil-5-)-methyltransferase ruma [Heliobacterium modesticaldum Ice1] gi|167593744|gb|ABZ85492.1| 23S rRNA (uracil-5-)-methyltransferase ruma [Heliobacterium modesticaldum Ice1] Length = 490 Score = 249 bits (637), Expect = 4e-64, Method: Composition-based stats. Identities = 83/423 (19%), Positives = 144/423 (34%), Gaps = 74/423 (17%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHD-- 54 L + Y Q K + +R + + + P YR R + H+ + Sbjct: 79 GCQLQMIDYPAQCRVKTEGVRDALRRLGRLENVPVGEIVGAANPWRYRNRVQMHLRREAG 138 Query: 55 --GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIR-----LEPLLRAKLFQI 107 G L + + E + D ++ + + E +R + + Sbjct: 139 APGKPLQMGYYRLSSHELVENDECPLLPESFPPVLKALRRHLPEIDPAGELPIRHVVLKT 198 Query: 108 DYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARK--------------------- 146 ++ + ++ L++ AWR+ L L Sbjct: 199 TTPLERAGEMMLILVFS-AWRSAWRKAVGDLAKRLMGEGATGEGATGEGATGEGATGEGA 257 Query: 147 ------------YQIQLIGRANKTKICLDRDY-------VDERLTVA-GRTLIYRQIENS 186 + + K L DY ERLT L S Sbjct: 258 TGEGLTGERYNLVSLYVNVNEKKEGEVLGPDYPFHVSKPGKERLTDYLPGGLQIEVGPAS 317 Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 FTQ N +L + G+ G +++ YCG G SL LAR RV+ +E +V Sbjct: 318 FTQVNPRQTE-ILYQLTKEVCGLTGRETIIDAYCGAGTISLFLARDCARVIGIEEVPMAV 376 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 E A+ N N + NV+ + ++ ++ + I +DPPR G Sbjct: 377 EDAQKNAEQNGITNVEFLTGKVEDLLPSLLE------------RACVPDVIVLDPPRRGC 424 Query: 305 DDATVGMVQ--AYPHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVL 361 + + I+Y+SC+P SL RD + L+ ++++ D FP T H+E VL Sbjct: 425 HARVIEAIAQTGPDRIVYVSCDPASLARDAARLTAHGWQVKQVTPVDMFPQTGHVETVVL 484 Query: 362 LVR 364 + R Sbjct: 485 MSR 487 >gi|298373691|ref|ZP_06983680.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroidetes oral taxon 274 str. F0058] gi|298274743|gb|EFI16295.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroidetes oral taxon 274 str. F0058] Length = 477 Score = 249 bits (637), Expect = 4e-64, Method: Composition-based stats. Identities = 81/405 (20%), Positives = 153/405 (37%), Gaps = 54/405 (13%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFHI----W 52 I YE+QL K ++ +L + + YR + EF W Sbjct: 85 GCKWQILPYERQLFYKQKQVEDSLLRIGKIELPAVLPIVGSEQEYFYRNKLEFTFSNRKW 144 Query: 53 HDGDDLYHI-------MFDQQTK------ERMRIDYFMPGSLLINALMIEMMATIRLEPL 99 D M + + I+ + N++ E+ L Sbjct: 145 LTNLDESEGIEANPKSMNGLGFHIPGMFDKVLDINKCWLQDDISNSIRNEIRRYALNNNL 204 Query: 100 ----LRAK---LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLI 152 LR + L + T+ + + +V +++ + ++ + ++ Sbjct: 205 SFFDLRRQEGFLRTLMIRTASTGELMVLVVFFYDDKEQINNLLSYIKKMFPQITSLLYVV 264 Query: 153 GRA-----NKTKICL--DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA- 204 R KI L R+Y+ E + L ++ SF Q N+ ++ + V Sbjct: 265 NRKANDTITDQKIELFDGREYIVEEM----EGLRFKIGAKSFYQTNSRQAYNLYKVVRDF 320 Query: 205 ATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRM 264 A + + +LY G G + +AR +V+ +E ++E A+ N A N + N + Sbjct: 321 ARIDDRMLVYDLYTGTGTIANFVARKAKKVIGIEYVPEAIEDAKENSAINGIVNTEFFAG 380 Query: 265 SSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG--MVQAYPHILYIS 322 K+ +D H + I DPPR+G+ + + ++ + P I+Y+S Sbjct: 381 DMKDVLSQSF----------VDYHG-QPDVIITDPPRAGMHEDVIKTILLASAPRIVYVS 429 Query: 323 CNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRKPS 367 CNP + RDL +L + I + D FP+T H+E VLL ++ + Sbjct: 430 CNPATQARDLQMLDADYKIVAVQPVDMFPHTHHVENVVLLEKRKT 474 >gi|19310570|gb|AAL85018.1| unknown protein [Arabidopsis thaliana] Length = 564 Score = 249 bits (637), Expect = 4e-64, Method: Composition-based stats. Identities = 79/423 (18%), Positives = 144/423 (34%), Gaps = 78/423 (18%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQV-----PNLQIFRSE------PIHYRMRAEFH 50 YE QL K +++ +++ P L+I HYR + EF Sbjct: 157 GCKTQNLSYEAQLRAKEEQVHELIRHVGRFSDNNPGLEIVLKPIVACDIQFHYRNKMEFS 216 Query: 51 I-------------WHDGDDLYHIMFDQQT--KERMRIDYFMPGSLLINALMIEMMATIR 95 DG + + + + +D + S N ++ + R Sbjct: 217 FGPQRWLPIEMLNERQDGPKNFALGLHAPGFFDKVLNVDKCLLQSEPGNLVLAAVQDCWR 276 Query: 96 LEPL-------------LRAKLFQID-YLTSQSDQAIVTLIYHRLLDDAWRECAIRL--- 138 L L+ + + + + S + +V + + + R+ Sbjct: 277 DPELSLSPYDCRSHVGFLKHLMLRTGRNVETGSLELMVNFVTSSYKPELLKPLVDRISSI 336 Query: 139 ---RDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGIN 195 ++ + K +D + E L R L ++ NSF Q N Sbjct: 337 PQVVSIMNNVNSSVGNTSVGEKEYTLYGKDTITEVL----RGLTFQISANSFFQTNTHQA 392 Query: 196 VHMLEWVLAATKGIQGD----LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251 +L ++ + G++GD +L+L+CG G L LAR V E+ ++ A N Sbjct: 393 E-VLYKLIEESAGLKGDGSEVVLDLFCGTGTIGLTLARRAKHVYGYEVVPQAITDAHKNA 451 Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD--DATV 309 N + N ++ + + D + + + DP R G+ Sbjct: 452 QINGIENATFIQGDLNKIGE------------DFGNNFPKPDIVISDPNRPGMHMKLIKF 499 Query: 310 GMVQAYPHILYISCNPDSLCRDLSILSTT---------HTIERLALFDQFPYTRHMECGV 360 + P I+Y+SCNP + RDL L + + + D FP+T H+EC Sbjct: 500 LLKLKSPRIIYVSCNPATCARDLDYLCHGVEEKNLKGCYKLMSVQPVDMFPHTPHIECVC 559 Query: 361 LLV 363 LL Sbjct: 560 LLE 562 >gi|42565079|ref|NP_188767.2| RNA methyltransferase family protein [Arabidopsis thaliana] gi|9280234|dbj|BAB01724.1| RNA methyltransferase-like protein [Arabidopsis thaliana] gi|332642969|gb|AEE76490.1| RNA methyltransferase family protein [Arabidopsis thaliana] Length = 554 Score = 249 bits (637), Expect = 4e-64, Method: Composition-based stats. Identities = 79/423 (18%), Positives = 144/423 (34%), Gaps = 78/423 (18%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQV-----PNLQIFRSE------PIHYRMRAEFH 50 YE QL K +++ +++ P L+I HYR + EF Sbjct: 147 GCKTQNLSYEAQLRAKEEQVHELIRHVGRFSDNNPGLEIVLKPIVACDIQFHYRNKMEFS 206 Query: 51 I-------------WHDGDDLYHIMFDQQT--KERMRIDYFMPGSLLINALMIEMMATIR 95 DG + + + + +D + S N ++ + R Sbjct: 207 FGPQRWLPIEMLNERQDGPKNFALGLHAPGFFDKVLNVDKCLLQSEPGNLVLAAVQDCWR 266 Query: 96 LEPL-------------LRAKLFQID-YLTSQSDQAIVTLIYHRLLDDAWRECAIRL--- 138 L L+ + + + + S + +V + + + R+ Sbjct: 267 DPELSLSPYDCRSHVGFLKHLMLRTGRNVETGSLELMVNFVTSSYKPELLKPLVDRISSI 326 Query: 139 ---RDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGIN 195 ++ + K +D + E L R L ++ NSF Q N Sbjct: 327 PQVVSIMNNVNSSVGNTSVGEKEYTLYGKDTITEVL----RGLTFQISANSFFQTNTHQA 382 Query: 196 VHMLEWVLAATKGIQGD----LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251 +L ++ + G++GD +L+L+CG G L LAR V E+ ++ A N Sbjct: 383 E-VLYKLIEESAGLKGDGSEVVLDLFCGTGTIGLTLARRAKHVYGYEVVPQAITDAHKNA 441 Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD--DATV 309 N + N ++ + + D + + + DP R G+ Sbjct: 442 QINGIENATFIQGDLNKIGE------------DFGNNFPKPDIVISDPNRPGMHMKLIKF 489 Query: 310 GMVQAYPHILYISCNPDSLCRDLSILSTT---------HTIERLALFDQFPYTRHMECGV 360 + P I+Y+SCNP + RDL L + + + D FP+T H+EC Sbjct: 490 LLKLKSPRIIYVSCNPATCARDLDYLCHGVEEKNLKGCYKLMSVQPVDMFPHTPHIECVC 549 Query: 361 LLV 363 LL Sbjct: 550 LLE 552 >gi|21672850|ref|NP_660915.1| RNA methyltransferase [Chlorobium tepidum TLS] gi|50401598|sp|Q8KGF9|Y009_CHLTE RecName: Full=Uncharacterized RNA methyltransferase CT0009 gi|21645898|gb|AAM71257.1| RNA methyltransferase, TrmA family [Chlorobium tepidum TLS] Length = 483 Score = 249 bits (637), Expect = 4e-64, Method: Composition-based stats. Identities = 92/408 (22%), Positives = 160/408 (39%), Gaps = 63/408 (15%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMML---AFQVPNLQIFRSEP--IHYRMRAEFHIWH--- 53 + YE QL K ++ + F+ P+++ + P +HYR + EF + Sbjct: 92 GCKWMHVSYEAQLRYKHKKVTDSLEHIGGFESPDVRPVLAAPDALHYRNKVEFSCSNMRY 151 Query: 54 ------------DGDDLYHIMFDQQTKERM-RIDYFMPGSLLINAL-----------MIE 89 E++ +D +N + +E Sbjct: 152 LLQSEIDSDQLAKPKTFALGFHAPGNFEKVLDLDTCYLAKECMNRVLNVLRDFAIERGLE 211 Query: 90 MMATIRLEPLLRAKLFQ---------IDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRD 140 A E LR + + ++ +TS D+A++ + R L+ A E + L + Sbjct: 212 PYAAKAHEGYLRNLMLRYSERHEQLMVNIVTSWYDKALMQALKER-LEAAMPEQQMTLLN 270 Query: 141 ALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLE 200 + RK + + + YV ERL L +R NSF Q N + + Sbjct: 271 NVTTRK---NTVATGEQEYVISGDGYVTERLG----DLDFRISANSFFQTNTRQAETLYD 323 Query: 201 WVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259 ++A D + +LYCG G +L LARH + + +E+ + +V+ A N N ++N Sbjct: 324 QIIAVGGITPEDTVYDLYCGTGTITLYLARHCKQAIGIEVVESAVKDAEMNAELNGLSNT 383 Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-H 317 + K F AM+ E + + I DPPR+G+ + M++ P Sbjct: 384 VFFQADLKNF-HAMQEALE---------PYAKPRIIVTDPPRAGMHPKALDTMLKLQPER 433 Query: 318 ILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364 I+Y+SCNPD+L RD ++ + + D FP T H+E R Sbjct: 434 IVYVSCNPDNLARDGKEIAARGYRMTSAQPVDMFPQTNHIETVACFER 481 >gi|325508852|gb|ADZ20488.1| S-adenosylmethionine-dependent methyltransferase [Clostridium acetobutylicum EA 2018] Length = 453 Score = 249 bits (637), Expect = 4e-64, Method: Composition-based stats. Identities = 84/385 (21%), Positives = 155/385 (40%), Gaps = 47/385 (12%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAE--FHIWHDGDDLYHIM 62 YE+QL K + ++ ++ + + E YR + E F + G +L M Sbjct: 86 PYEKQLEFKEREVLKLFKDAKIEGFEYLGILGSPEKEEYRNKMEYTFGDFVKGGELTLGM 145 Query: 63 FDQQTK-ERMRIDYFMPGSL---LINALMIE--------MMATIRLEPLLRAKLFQIDYL 110 + + + D +I ++E + ++ LR + + Sbjct: 146 HAKNSGFSIVNTDKCNIVDEDFRIILKTVVEYFRKKDLPIYKVMQHVGYLRNLVVRKAKN 205 Query: 111 TSQSDQAIVTLIYHRLLDDAWRECAI------RLRDALHARKYQIQLIGRANKTKICLDR 164 T + A+VT E L+ LH + + R +K + Sbjct: 206 TGEILIALVTTSQVDFDLTELTEILKSINYLGELKGILHVINDGLADMVRGDKIVTLFGQ 265 Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNF 223 DY+ ER+ L ++ SF Q N+ + VL + + +LYCG G Sbjct: 266 DYITERIL----DLKFKISLFSFFQTNSKGAEKLYSEVLEFLGDVSNKTVFDLYCGTGTI 321 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 + ++ ++V+ +E+ + +VEAA+ N N+++N + + ++ Sbjct: 322 GQLASKKAEKVIGIELIEEAVEAAKENTKLNNISNCSFIAGDVAKVITEIKE-------- 373 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILST-THT 340 + TI +DPPR G+ + V + P I+Y+SCNP +L DL +L + Sbjct: 374 -------KPDTIILDPPRPGVSPNAMKYVIKFNAPEIVYVSCNPKTLVNDLGVLRAYGYE 426 Query: 341 IERLALFDQFPYTRHMECGVLLVRK 365 +E++ + D FP T H+E VLL RK Sbjct: 427 VEKVKIVDMFPGTGHVETVVLLQRK 451 >gi|312877074|ref|ZP_07737046.1| RNA methyltransferase, TrmA family [Caldicellulosiruptor lactoaceticus 6A] gi|311796124|gb|EFR12481.1| RNA methyltransferase, TrmA family [Caldicellulosiruptor lactoaceticus 6A] Length = 451 Score = 249 bits (636), Expect = 4e-64, Method: Composition-based stats. Identities = 78/386 (20%), Positives = 154/386 (39%), Gaps = 38/386 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWHDGDD 57 L+ +Y+ QL K + + +I P YR + + D Sbjct: 80 GCHLMHAKYQHQLKLKKLLVEDAFRRIGKLSPKINDVIGMENPFRYRNKTALPVGGDYVK 139 Query: 58 LYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLFQ 106 + + T + + IDY + LI IE+ + + +LR + + Sbjct: 140 PQIGFYRKMTHDIVPIDYCLIQHEFCDDVIKGMKELIKKHKIEVYDERKHQGVLRHIVVR 199 Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY 166 + D+ ++ L+ + + + + + D K + I + D Sbjct: 200 NSFA---FDEMMLILVCTK-VPENLKAIKKDIIDKFPKIKSFFVNLNPKRTNVILGEEDI 255 Query: 167 VDE---RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGN 222 + + L + SF Q N+ + V+ K ++ + + ++Y G G Sbjct: 256 LIWGSSTIKDKIGNLTFEISPKSFFQVNSMQTEVLYSQVVKYLKNVKAEIVFDIYSGIGT 315 Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282 S+ +A +V A+E+ + +VE A+ N N+++N++ + S++ E RL Sbjct: 316 ISMFVAPFCKKVYAIELVRDAVEDAKKNSKNNNISNIEFISGSAE---------IEIPRL 366 Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILS-TTH 339 I + + +DPPRSG + + + P+I+Y+SCNP +L RD +IL + Sbjct: 367 MKSGII---PQAVILDPPRSGCEKELLESLIEHKIPNIIYVSCNPSTLARDSNILCSNGY 423 Query: 340 TIERLALFDQFPYTRHMECGVLLVRK 365 + + D FP T H+EC L ++ Sbjct: 424 EVVEVQPVDMFPQTFHVECVALFKKR 449 >gi|83590746|ref|YP_430755.1| RNA methyltransferase [Moorella thermoacetica ATCC 39073] gi|83573660|gb|ABC20212.1| 23S rRNA m(5)U-1939 methyltransferase [Moorella thermoacetica ATCC 39073] Length = 473 Score = 249 bits (636), Expect = 4e-64, Method: Composition-based stats. Identities = 84/416 (20%), Positives = 136/416 (32%), Gaps = 75/416 (18%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56 L Y QL K + + + + P YR + H+ Sbjct: 76 GCDLQHLDYRAQLHWKRRLVIDALQRLGHLRDIPVLPVLGMANPWGYRNKVRLHVRR--- 132 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116 + + E LL L+ A +RL P L L + + Sbjct: 133 -GRLGFYRPGSHELAPFSCCP---LLPPGLLKAARAIVRLLPELPPGLQHVTLRQGLATG 188 Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTK----------------- 159 ++ ++ RE A +L + L G Sbjct: 189 ELLVVLEALPGWQGDRELAEKLAGRFPELVGVVSLAGGGRSRSGPKDFAGEPALECSGWV 248 Query: 160 --------------------------ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAG 193 RDY++ERL L + +F Q N+ Sbjct: 249 KTGGKEARRARYQEGFVPRRLGGRPFTLYGRDYLEERLG----DLRFYISATTFFQVNSA 304 Query: 194 INVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIA 252 + G+ +L+ YCG+G +L L+R RV VE+ ++ AR N Sbjct: 305 QAEVLYNKAATFAGLQGGEEVLDAYCGSGAIALWLSRQAGRVEGVEVVPEAIVDARRNSI 364 Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312 N++ NV +++ + YR + I +DPPR+G D + V Sbjct: 365 LNNLANVHFRTGAAEAVLPRLAG------------KGYRPEVIILDPPRAGCDRRVLAAV 412 Query: 313 QAY--PHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRK 365 ++YISCNP +L RDL+ L + D FP+T H+EC LV++ Sbjct: 413 ATMEPRRVVYISCNPSTLARDLAHLREAGFKPGPVQPVDMFPHTHHVECCCFLVKE 468 >gi|15894714|ref|NP_348063.1| S-adenosylmethionine-dependent methyltransferase [Clostridium acetobutylicum ATCC 824] gi|50401651|sp|Q97J51|Y1435_CLOAB RecName: Full=Uncharacterized RNA methyltransferase CA_C1435 gi|15024377|gb|AAK79403.1|AE007655_1 S-adenosylmethionine-dependent methyltransferases [Clostridium acetobutylicum ATCC 824] Length = 456 Score = 249 bits (636), Expect = 5e-64, Method: Composition-based stats. Identities = 84/385 (21%), Positives = 155/385 (40%), Gaps = 47/385 (12%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAE--FHIWHDGDDLYHIM 62 YE+QL K + ++ ++ + + E YR + E F + G +L M Sbjct: 89 PYEKQLEFKEREVLKLFKDAKIEGFEYLGILGSPEKEEYRNKMEYTFGDFVKGGELTLGM 148 Query: 63 FDQQTK-ERMRIDYFMPGSL---LINALMIE--------MMATIRLEPLLRAKLFQIDYL 110 + + + D +I ++E + ++ LR + + Sbjct: 149 HAKNSGFSIVNTDKCNIVDEDFRIILKTVVEYFRKKDLPIYKVMQHVGYLRNLVVRKAKN 208 Query: 111 TSQSDQAIVTLIYHRLLDDAWRECAI------RLRDALHARKYQIQLIGRANKTKICLDR 164 T + A+VT E L+ LH + + R +K + Sbjct: 209 TGEILIALVTTSQVDFDLTELTEILKSINYLGELKGILHVINDGLADMVRGDKIVTLFGQ 268 Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNF 223 DY+ ER+ L ++ SF Q N+ + VL + + +LYCG G Sbjct: 269 DYITERIL----DLKFKISLFSFFQTNSKGAEKLYSEVLEFLGDVSNKTVFDLYCGTGTI 324 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 + ++ ++V+ +E+ + +VEAA+ N N+++N + + ++ Sbjct: 325 GQLASKKAEKVIGIELIEEAVEAAKENTKLNNISNCSFIAGDVAKVITEIKE-------- 376 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILST-THT 340 + TI +DPPR G+ + V + P I+Y+SCNP +L DL +L + Sbjct: 377 -------KPDTIILDPPRPGVSPNAMKYVIKFNAPEIVYVSCNPKTLVNDLGVLRAYGYE 429 Query: 341 IERLALFDQFPYTRHMECGVLLVRK 365 +E++ + D FP T H+E VLL RK Sbjct: 430 VEKVKIVDMFPGTGHVETVVLLQRK 454 >gi|309776573|ref|ZP_07671553.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Erysipelotrichaceae bacterium 3_1_53] gi|308915674|gb|EFP61434.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Erysipelotrichaceae bacterium 3_1_53] Length = 456 Score = 249 bits (636), Expect = 5e-64, Method: Composition-based stats. Identities = 83/393 (21%), Positives = 157/393 (39%), Gaps = 41/393 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWHDGDD 57 S LL + Q K ++++ + LQ + +P HYR + D Sbjct: 80 SCQLLHMSTQGQQKFKNRSMQELCRKAKGLRLQTEDIVSMEKPWHYRNKIIIGFQRDKQR 139 Query: 58 LYHIMFDQQ-TKERMRIDYF---MPGSLLINALMIEMMATIRLEP--------LLRAKLF 105 F ++ + + + A ++E+M +R+EP LLR + Sbjct: 140 HIQAGFYEEFSHRIIPYKQCLLHPKACDDVVATIVELMGKLRIEPYEEDTRRGLLRHVVL 199 Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD 165 + ++ Q +V + + + A + LR +Q + KT + L + Sbjct: 200 RYGAVSK---QLMVVFVLNSPVFPARKNFIQELRKRHPEITTIVQNVNT-RKTSVVLGDE 255 Query: 166 ----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGN 220 Y + + +R SF Q N + + + +L+ YCG Sbjct: 256 ERVLYGPGYIEDVLCGMTFRISAKSFYQINHEQTEVLYRRAVELLKLSGRETVLDAYCGI 315 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G + +++ +V+ VEI + +VE AR N N ++N++ V + + + E++ Sbjct: 316 GTIGMYVSQFVKQVVGVEINRDAVEDARINAKINRISNIRFVCEDAGRYMTRLAAEKK-- 373 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCRDLSILST- 337 R + +DPPRSG + + +V+ P +LYISCNP + RDL +L Sbjct: 374 ----------RLDVVIMDPPRSGSSEEFIKSLVRMKPRQVLYISCNPQTQVRDLQMLERM 423 Query: 338 THTIE-RLALFDQFPYTRHMECGVLLVRKPSGW 369 + ++ + D FP+T H+E L+ + G Sbjct: 424 GYRVDGNMVPVDLFPHTFHVETVALMSKVNPGK 456 >gi|237735640|ref|ZP_04566121.1| conserved hypothetical protein [Mollicutes bacterium D7] gi|229381385|gb|EEO31476.1| conserved hypothetical protein [Coprobacillus sp. D7] Length = 383 Score = 249 bits (636), Expect = 5e-64, Method: Composition-based stats. Identities = 76/389 (19%), Positives = 150/389 (38%), Gaps = 48/389 (12%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWHDGDD 57 S + Y++QL K D ++++ ++ + I P YR + H Sbjct: 16 SCKYINTDYQRQLKIKTDYCKKLLKDNKLDMYEVKDTIGMGHPYEYRNKIIVAFNH---R 72 Query: 58 LYHIMFDQQTKERMRIDYFMPGSLL-----------INALMIEMMATIRLEPLLRAKLFQ 106 +++ + + + D + L + + + R LLR L + Sbjct: 73 YEFGFYEEDSHKIIPYDRCLLHEELSDMIIKKIQSLLKRYRVSIYDENRNRGLLRHVLIR 132 Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGR-------ANKTK 159 +T DQ +V L+ + + + L + K + + + N+ K Sbjct: 133 RALVT---DQTMVVLVCNDNVFKGSKNFCNELIKNFPSIKTVVLNVNKRKTSVVLGNEEK 189 Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGI-QGDLLELYC 218 I + ++ + L L ++ SF Q N + L Q +++ YC Sbjct: 190 ILYGKGFIVDELC----GLKFKISPKSFYQINHQQCELLYSKALDLLNLTGQERIIDAYC 245 Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278 G G +++A V VE+ K +V+ A N N + N+K + + F + ++++ Sbjct: 246 GIGTIGMIVANRTKEVTGVELNKDAVKDAINNAKMNKIENIKFINDDASAFMIKLAKQKQ 305 Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILS 336 + + +DPPRSG + V+ ++YISC+P + RD+ + Sbjct: 306 ------------KVDCVIMDPPRSGSTQEFMDAVKILNPKQVVYISCDPSTQVRDIKYFA 353 Query: 337 T-THTIERLALFDQFPYTRHMECGVLLVR 364 + E + D FP+T H+E VLL + Sbjct: 354 KIGYRGEVMYPVDMFPHTSHVETIVLLSK 382 >gi|291521011|emb|CBK79304.1| 23S rRNA m(5)U-1939 methyltransferase [Coprococcus catus GD/7] Length = 463 Score = 249 bits (636), Expect = 5e-64, Method: Composition-based stats. Identities = 85/407 (20%), Positives = 158/407 (38%), Gaps = 64/407 (15%) Query: 2 SGTLL-IDQYEQQLAEKVDRLRQMM--------------LAFQVPNLQIFRSEPIHYRMR 46 G + Y++QL K ++++++ V + YR + Sbjct: 79 GGCMYQTMGYDEQLKMKAGQVKKLLDTAISSAGQVDAEGKPDYVFEGITGSPKQWAYRNK 138 Query: 47 AEFHIW---HDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEP----- 98 EF DG + T + + +D ++ ++ P Sbjct: 139 MEFSFGDDHLDGPLTLGLHKKASTYDILTVDDCKIVHDDFTTVLKTVLDYFTEHPMPYYK 198 Query: 99 ------LLRAKLFQ---------IDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALH 143 LR L + + +T+ ++ +T + RLLD + R+ +H Sbjct: 199 KMKHTGYLRHLLVRRSETTGEMLVHLVTTSQEECDLTELTQRLLD---LQLEGRIVGIMH 255 Query: 144 ARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL 203 + + ++++T+I +DY E + L ++ SF Q N + + Sbjct: 256 IINDTLADVVQSDETRILYGQDYFYEHIL----GLKFKISTFSFFQTNTLGAELLYDIAR 311 Query: 204 AATKGIQG-DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262 + + + +LY G G + +LA +V+ VEI + +VEAA+ N N ++N + + Sbjct: 312 SYIGDTKDMTVFDLYSGTGTIAQILAAVAKKVVGVEIVEEAVEAAKVNAGLNQLDNCEFI 371 Query: 263 RMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILY 320 LK +D + I +DPPR G+ + + Y P+++Y Sbjct: 372 AGDV---------------LKVLDTIEDKPDYIVLDPPRDGIHPKALDKIIDYQVPNMVY 416 Query: 321 ISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRKP 366 ISC P SL RDL +L + +++ D FP T H E LL +KP Sbjct: 417 ISCKPTSLARDLGVLIERGYKVKKTHCVDMFPGTVHCETVCLLSKKP 463 >gi|255305404|ref|ZP_05349576.1| putative tRNA (Uracil-5-)-methyltransferase [Clostridium difficile ATCC 43255] Length = 451 Score = 249 bits (636), Expect = 5e-64, Method: Composition-based stats. Identities = 83/393 (21%), Positives = 146/393 (37%), Gaps = 49/393 (12%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLA-----FQVPNLQIFRSEPIHYRMRAE--FHIWHD 54 TLL YE+QL K ++ + L FQ ++ E +YR + E F Sbjct: 79 GCTLLSVPYEKQLEIKEKQVMDLFLKQDLFGFQFLGIE-GSPENKYYRNKMEYTFGDEVK 137 Query: 55 GDDLYHIMFDQQTKERMR-IDYFMPGSL---LINALMIEMMAT--------IRLEPLLRA 102 L + + ++ ++ M I A +E + + LR Sbjct: 138 NGPLTLGLHKKGKHIDIQTVEECMLVDEDFSKILASSVEFFDEKKLPYYRTMNHKGYLRH 197 Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAI------RLRDALHARKYQIQLIGRAN 156 + + T++ IVT + +++ + L LH + + + Sbjct: 198 LVVRKGIHTNEIMVNIVTSSQEDFDMNEFKDLLLGIDLKAELVGVLHTINDGLADAVQCD 257 Query: 157 KTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-E 215 + ++ RDY+ E + L ++ SF Q N + ++ + Sbjct: 258 ELRVLYGRDYIQEEIL----GLKFKISPFSFFQTNTKGAEVLYSIARDFIGDYNDKVVFD 313 Query: 216 LYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275 LY G G+ V+A +V +EI + +V AA N N + N + + + + ++ Sbjct: 314 LYSGTGSIGQVMAGAAKKVYGIEIVEEAVVAANENAKLNGLTNCEFIAGDVAKVVKDLK- 372 Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLS 333 + I VDPPR G+ + + + I+YISCNP SL DL Sbjct: 373 --------------DKPDLIIVDPPRPGIHKDAIRDICGFGAKEIVYISCNPKSLVVDLV 418 Query: 334 ILST-THTIERLALFDQFPYTRHMECGVLLVRK 365 + I+ + D FP T H+E LL RK Sbjct: 419 DFKGYGYEIKMVKCMDMFPNTPHVETVALLRRK 451 >gi|254496451|ref|ZP_05109328.1| 23S rRNA 5-methyluridine methyltransferase [Legionella drancourtii LLAP12] gi|254354307|gb|EET12965.1| 23S rRNA 5-methyluridine methyltransferase [Legionella drancourtii LLAP12] Length = 444 Score = 249 bits (636), Expect = 5e-64, Method: Composition-based stats. Identities = 83/376 (22%), Positives = 148/376 (39%), Gaps = 30/376 (7%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSE----PIHYRMRAEFHIWHDGDD 57 +L + Q+ K ++L ++ + Q + P +YR +A + + Sbjct: 85 GCSLQHLSAQDQIHFKQEQLLDLLERYGHTQPQTVLAPLVANPWNYRNKARLSVRYVEKK 144 Query: 58 LYHIMFDQQTKER---MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQS 114 ++ ++ I + I+A +I + I + + QI+ Sbjct: 145 QASMVGFRERNSPRFITDISQCPVLNARIDADIIPLRHLIDSMEE-KHCIAQIEVAAGDE 203 Query: 115 DQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVA 174 + ++ R L +R++ +Y I L + C + E LT A Sbjct: 204 EIGLI----FRNLSALTPNDELRIQQFAEQYQYTIFLQPSGPDSVYCFYPPHASEFLTYA 259 Query: 175 GRTL--IYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHF 231 Y FTQ N+ +N M+ L D +L+L+CG GNFSL +A+ Sbjct: 260 LPDYQITYSFHPTDFTQVNSELNRAMVALALQLMDLKSTDIVLDLFCGLGNFSLPMAKFC 319 Query: 232 DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291 +VL VE + VE A N AN+++NV + + + + + Sbjct: 320 AKVLGVEGSAMMVERAYMNAKANNLSNVDFYAANLDDVNEVQK------------LVQQT 367 Query: 292 FKTIFVDPPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDLSIL--STTHTIERLALFD 348 + +DPPRSG + + P I+Y+SCNP +L RD IL + + + + D Sbjct: 368 CNKVLIDPPRSGALELVKQIDTLNPERIVYVSCNPVTLARDTDILVNQKGYVLIKAGVMD 427 Query: 349 QFPYTRHMECGVLLVR 364 FP+T H+E L + Sbjct: 428 MFPHTAHVESIALFEK 443 >gi|145220570|ref|YP_001131279.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prosthecochloris vibrioformis DSM 265] gi|145206734|gb|ABP37777.1| 23S rRNA m(5)U-1939 methyltransferase [Chlorobium phaeovibrioides DSM 265] Length = 484 Score = 249 bits (636), Expect = 5e-64, Method: Composition-based stats. Identities = 88/408 (21%), Positives = 148/408 (36%), Gaps = 55/408 (13%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMML---AFQVPN--LQIFRSEPIHYRMRAEFHIWHDG- 55 L+ +Y QL K +++ ++ F P + P+HYR + EF Sbjct: 86 GCKLMHIRYPAQLRYKEKKVQDALIHIGGFSEPPMLPALGAPSPVHYRNKIEFSCSGKRY 145 Query: 56 -------------DDLYHIMFDQQTKERMRIDY--FMPGSLLIN---ALMIEMMATIRLE 97 + + F ID + +N L + +E Sbjct: 146 LRPEELSMDELLQPKNFALGFHAPGNFEKVIDTARCHLATEEMNSVLRLTRDFALENAME 205 Query: 98 PL--------LRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALH-----A 144 P LR + + T + IVT Y L +++ + Sbjct: 206 PYMAREHTGFLRNLVVRSSVHTGEVMVNIVTSWYDGELMESYSAHLQSGMQGVPLTLVNN 265 Query: 145 RKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA 204 + + + L + E+L + L +R NSF Q N + + Sbjct: 266 VTNRRNTVATGDVEYTILGSGTISEKLGL----LEFRISANSFFQTNTLQAEALYGRIQD 321 Query: 205 ATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVR 263 A + GD + +LYCG G +L LARH +R + +E+ + S++ AR N +N + N + Sbjct: 322 ACELRAGDRVYDLYCGTGTITLWLARHAERAIGLEVVESSIQDARSNAESNGIGNAYFFQ 381 Query: 264 MSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYI 321 K+ M R E R I DPPR+G+ + + I+Y+ Sbjct: 382 TDLKDLGAMMERLEEHGR----------PDVIVTDPPRAGMHPKALETMLKLGARRIVYV 431 Query: 322 SCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVRKPSG 368 SCNP SL RD ++ + + + D FP+T H+E SG Sbjct: 432 SCNPASLARDGKEIAGAGYRLVSVEPVDMFPHTAHIESVACFDYSASG 479 >gi|253583643|ref|ZP_04860841.1| tRNA (Uracil-5-)-methyltransferase [Fusobacterium varium ATCC 27725] gi|251834215|gb|EES62778.1| tRNA (Uracil-5-)-methyltransferase [Fusobacterium varium ATCC 27725] Length = 451 Score = 249 bits (636), Expect = 5e-64, Method: Composition-based stats. Identities = 69/384 (17%), Positives = 162/384 (42%), Gaps = 34/384 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-----IFRSEPIHYRMRAEFHIWHDGD 56 + +Y+ QL K + ++ + I +P HYR + Sbjct: 81 GCDFGMLKYDAQLKYKKLMVEDVLKKIGKMDNISVADVIGSEDPYHYRNKIIEPFRKSKG 140 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-------LRAKLFQIDY 109 ++ F +++ + ++ + S L N ++ E+ + + E + + L + Sbjct: 141 EIISGFFKRKSHDVFEVEESILNSRLGNKIIKELKSILNREKVSVYDENEHKGILRNVMV 200 Query: 110 LTSQSDQAI-VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR---- 164 T+ ++A+ V +I ++ +++ + L++ ++ K I + +T + L Sbjct: 201 RTNSKNEAMLVLIINAVKVEKRYKDILMELKNKINEIK-SIYISLNPKRTNVALGEKNVF 259 Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNF 223 + ++ +T + + SF Q N + + K I+ ++++ Y G G Sbjct: 260 IWGEKTITEEIDGISFNISPLSFFQINLPQTKKLYNTAVNYFKDIENKNVVDAYSGTGTL 319 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 +++L++ +V A+E+ + + N ++N++ + + ++ +L Sbjct: 320 AMILSKKAKKVFAIELVQSATNDGIKTAKENGISNIEFINGAVED------------KLP 367 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILS-TTHT 340 ++ + I DPPR G++++++ V I+YISCNP + RD ILS +T Sbjct: 368 ELIKKGEKVDAIIFDPPRKGIEESSLLKVAESNIKEIVYISCNPSTFARDAEILSREGYT 427 Query: 341 IERLALFDQFPYTRHMECGVLLVR 364 +E++ D FP T H E ++ Sbjct: 428 LEKVQPVDMFPGTAHTEVVGRFIK 451 >gi|260899635|ref|ZP_05908030.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio parahaemolyticus AQ4037] gi|308110556|gb|EFO48096.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio parahaemolyticus AQ4037] Length = 439 Score = 249 bits (636), Expect = 5e-64, Method: Composition-based stats. Identities = 82/371 (22%), Positives = 150/371 (40%), Gaps = 30/371 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRS---EPIHYRMRAEFHIWHDGD-- 56 L Y+QQL K LRQ+M F ++ + E + YR RA ++ D Sbjct: 90 GCDLQHLNYDQQLTHKQQTLRQLMRKFAGSDIDLDAPVLGESLGYRRRARVSLFVDKKTR 149 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116 L+ +Q+K+ ++ + +NAL+ E+ + + +L ++ + + Sbjct: 150 QLHFGFRKKQSKQIAQVTDCPVLAPELNALLPEIYSVLTAFKK-PEQLGHVELVLGDNGP 208 Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGR 176 I R L + E L + + + L+ ++ + E Sbjct: 209 CITL----RYLSNLADEEVSALVELATRHQASLYLMPETDQLNLVAG-----EMPFYQEA 259 Query: 177 TLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVL 235 + N+F Q N +N M+E + + +L+L+CG GNFSL +A+ V+ Sbjct: 260 GVKIPFAPNNFIQVNQAVNQKMVEQAIEWLDPQSDERVLDLFCGLGNFSLPIAKRAKHVV 319 Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295 VE VE A N + N +NN + + ++ + F + Sbjct: 320 GVEGVAEMVEKASNNASLNQINNAQFYHANLEQDFDGQA------------WAAENFDKV 367 Query: 296 FVDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYT 353 +DP R+G + ++Y+SCNP +L RD S+L + + +L + D FP+T Sbjct: 368 LLDPARAGASGIIDQVSALGAQRVVYVSCNPATLARDSQSLLEQGYQLTKLGMLDMFPHT 427 Query: 354 RHMECGVLLVR 364 H+E L + Sbjct: 428 SHLESMALFEK 438 >gi|153839832|ref|ZP_01992499.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio parahaemolyticus AQ3810] gi|149746649|gb|EDM57637.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio parahaemolyticus AQ3810] Length = 439 Score = 249 bits (636), Expect = 5e-64, Method: Composition-based stats. Identities = 81/371 (21%), Positives = 150/371 (40%), Gaps = 30/371 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRS---EPIHYRMRAEFHIWHDGD-- 56 L Y+QQL K LRQ+M F ++ + E + YR RA ++ D Sbjct: 90 GCDLQHLNYDQQLTHKQQTLRQLMRKFAGSDIDLDAPVLGESLGYRRRARVSLFVDKKTR 149 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116 L+ +Q+K+ ++ + +N L+ E+ + + +L ++ + + Sbjct: 150 QLHFGFRKKQSKQIAQVTDCPVLAPELNVLLPEIYSVLTAFKK-PEQLGHVELVLGDNGP 208 Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGR 176 I R L + E L + + + L+ ++ + E Sbjct: 209 CITL----RHLSNLADEEVSALVELATRHQASLYLMPETDQLNLVAG-----EVPFYQEA 259 Query: 177 TLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVL 235 + N+F Q N +N M+E + + +L+L+CG GNFSL +A+ V+ Sbjct: 260 GVKIPFAPNNFIQVNQAVNQKMVEQAIEWLDPQSDERVLDLFCGLGNFSLPIAKRAKHVV 319 Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295 VE VE A N + N +NN + + ++ + +F + Sbjct: 320 GVEGVAEMVEKASNNASLNQINNAQFYHANLEQDFDGQA------------WAAEKFDKV 367 Query: 296 FVDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYT 353 +DP R+G + ++Y+SCNP +L RD S+L + + +L + D FP+T Sbjct: 368 LLDPARAGASGIIDQVSALGAQRVVYVSCNPATLARDSQSLLEQGYQLTKLGMLDMFPHT 427 Query: 354 RHMECGVLLVR 364 H+E L + Sbjct: 428 SHLESMALFEK 438 >gi|328474127|gb|EGF44932.1| 23S rRNA m(5)U1939 methyltransferase [Vibrio parahaemolyticus 10329] Length = 439 Score = 249 bits (636), Expect = 5e-64, Method: Composition-based stats. Identities = 81/371 (21%), Positives = 149/371 (40%), Gaps = 30/371 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRS---EPIHYRMRAEFHIWHDGD-- 56 L Y+QQL K LRQ+M F ++ + E + YR RA ++ D Sbjct: 90 GCDLQHLNYDQQLTHKQQTLRQLMRKFAGSDIDLDAPVLGESLGYRRRARVSLFVDKKTR 149 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116 L+ +Q+K+ ++ + +N L+ E+ + + +L ++ + + Sbjct: 150 QLHFGFRKKQSKQIAQVTDCPVLAPELNVLLPEVYSVLTAFKK-PEQLGHVELVLGDNGP 208 Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGR 176 I L DD L + + + L+ ++ + E Sbjct: 209 CITLRHLSNLADDE----VSALVELATRHQASLYLMPETDQLNLVAG-----EVPFYQEA 259 Query: 177 TLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVL 235 + N+F Q N +N M+E + + +L+L+CG GNFSL +A+ V+ Sbjct: 260 GVKIPFAPNNFIQVNQAVNQKMVEQAIEWLDPQSDERVLDLFCGLGNFSLPIAKRAKHVV 319 Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295 VE VE A N + N +NN + + ++ + +F + Sbjct: 320 GVEGVAEMVEKASNNASLNQINNAQFYHANLEQDFDGQA------------WAAEKFDKV 367 Query: 296 FVDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYT 353 +DP R+G + ++Y+SCNP +L RD S+L + + +L + D FP+T Sbjct: 368 LLDPARAGASGIIDQVSALGAQRVVYVSCNPATLARDSQSLLEQGYQLTKLGMLDMFPHT 427 Query: 354 RHMECGVLLVR 364 H+E L + Sbjct: 428 SHLESMALFEK 438 >gi|331700891|ref|YP_004397850.1| RNA methyltransferase, TrmA family [Lactobacillus buchneri NRRL B-30929] gi|329128234|gb|AEB72787.1| RNA methyltransferase, TrmA family [Lactobacillus buchneri NRRL B-30929] Length = 461 Score = 249 bits (636), Expect = 5e-64, Method: Composition-based stats. Identities = 78/382 (20%), Positives = 140/382 (36%), Gaps = 42/382 (10%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPN-------LQIFRSEPIHYRMRAEFHIWHD-GDDLYHI 61 Y +QL K D +RQ + +Q I +P HYR +A F I HD + Sbjct: 96 YPKQLEFKRDVVRQSLEKYQPTGYRRFKLLPTIGMDDPTHYRNKATFQIRHDENGNTIAG 155 Query: 62 MFDQQTKERMR-----------IDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYL 110 ++ ++ + + + +I+ L I + +++ + + Sbjct: 156 LYKARSHDVVDLKTSALQYPLTMKVMRAIVTMIDELGIPAYDEEKNAGIIKTVVVRAAIA 215 Query: 111 TSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVD-- 168 T DQ VT I + R++ L +Q + T + + + Sbjct: 216 T---DQVQVTFITQSKKLLKKHQLLERIKAELPEVVSVMQNVNPGR-TSLIWGDEMIHLA 271 Query: 169 --ERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELYCGNGNFSL 225 E +T L + +F Q N + + + A L++ Y G G L Sbjct: 272 GRETITEVLNGLKFDLSARAFLQANPAMTSILYDEAFKALDLKGNEKLVDAYSGVGTIGL 331 Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285 +A+ V ++ +V+ A N N + N ++E L + Sbjct: 332 SVAKQVREVRGMDTIAEAVQDANANSVRNGIFNCLYEVGEAEEL------------LPEW 379 Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILSTTHTIER 343 + + VDPPR+GL D+ + + +YISCNP +L +DL L+ + +E Sbjct: 380 VDDGWTPTALIVDPPRTGLADSLIDTILDIVPKKFVYISCNPSTLAQDLVKLTEKYNVEY 439 Query: 344 LALFDQFPYTRHMECGVLLVRK 365 + D P T EC V +K Sbjct: 440 IQSVDLMPQTSRCECVVKFKKK 461 >gi|145300530|ref|YP_001143371.1| RNA methyltransferase [Aeromonas salmonicida subsp. salmonicida A449] gi|142853302|gb|ABO91623.1| RNA methyltransferase [Aeromonas salmonicida subsp. salmonicida A449] Length = 456 Score = 249 bits (636), Expect = 5e-64, Method: Composition-based stats. Identities = 65/389 (16%), Positives = 135/389 (34%), Gaps = 38/389 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ----VPNLQIFRSEPIHYRMRAEFHIWHDGDD 57 + Y QL K ++ + N + P YR +A++ + Sbjct: 85 GCQVRPLAYPAQLKLKQALVQSALEQAGLGNTTVNPILGMESPFAYRNKAQYAVRGCEAG 144 Query: 58 LYHIMFDQQTKERMRIDYFMPGSLL-----------INALMIEMMATIRLEPLLRAKLFQ 106 + + + + + D L + I + +R + + Sbjct: 145 AEIGFYRKHSHDLITADDCAVQDSLHVELNARVRNWMREHDIAAYDEVNHTGCVRNLMTR 204 Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWRECAIRL--RDALHARKYQIQLIGRANKTKICLDR 164 + + + +VTL + L + + ++ L Sbjct: 205 KGFKSGELMVVLVTLGEALPFEAELLATLSDLPITTLVQNINDERTNRILGANNRVLLGE 264 Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNF 223 + +++ L + SF Q N + L + + + ++YCG G Sbjct: 265 GVIRDKIH----ELEFEISPLSFFQNNPTQTDVLYSSALEYAELTGNETVFDIYCGIGTI 320 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 SL LA +V+ +E + ++ AR N A N + + + +++ + Sbjct: 321 SLFLAGKAAKVVGIESVESAISDARRNAALNGIEHTEFHVGKAEQL------------MP 368 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STTHT 340 ++ + +DPPR G D A + + A ++Y+SCNP +L RDL+ L Sbjct: 369 ELYAQGVTADVVVMDPPRKGCDKAVLQTLVAMAPRRLVYVSCNPQTLARDLAWLVKQGFM 428 Query: 341 IERLALFDQFPYTRHMECGVLLVRKPSGW 369 ++ + D FP++ H+E L P+G Sbjct: 429 LDEVQPVDMFPHSMHVEAVARLSL-PAGK 456 >gi|167037122|ref|YP_001664700.1| RNA methyltransferase [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320115540|ref|YP_004185699.1| TrmA family RNA methyltransferase [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166855956|gb|ABY94364.1| RNA methyltransferase, TrmA family [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319928631|gb|ADV79316.1| RNA methyltransferase, TrmA family [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 450 Score = 249 bits (636), Expect = 6e-64, Method: Composition-based stats. Identities = 83/392 (21%), Positives = 161/392 (41%), Gaps = 47/392 (11%) Query: 2 SGTLLID-QYEQQLAEKVDRLRQMMLAFQVPNLQ---IFRSEPIH-YRMRAEFHIWHDGD 56 G + + Y QL K D +++++ + + + I +S H YR + E+ D + Sbjct: 78 GGCIYQNVDYSDQLKIKEDIVKKLLEKEGIRDYEFLGIVKSPKEHGYRNKMEYTFGKDKE 137 Query: 57 DLYHIMFDQQT---------KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQ- 106 + ++ K + D F+ L I+ + + L Sbjct: 138 GNEVLGLHRKGRFYEVVMTDKCNIVDDDFLKALNLTFDYAIKKGLPFYDKKTHKGFLRHL 197 Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWRECAI---------RLRDALHARKYQIQLIGRANK 157 + S++ + ++ ++ L+ ++E RL LH + K Sbjct: 198 VVRKASKAGEILLNIVTTTQLEHDFKELIEIYKNVDFESRLVGVLHTQNDSWSDAVVCEK 257 Query: 158 TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLEL 216 + +DY+ E L L ++ SF Q N+ + E V + + +L Sbjct: 258 LNVLYGKDYLIEELL----GLKFKISAFSFFQTNSYGAEKLYETVREFAGDVSDKIVFDL 313 Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276 Y G G +++A +V+ +E+ + +V +AR N N + N + +Q ++ Sbjct: 314 YSGTGTIGIIMAPMAKKVIGIELVEEAVMSARENAKLNGLENCTFIAGD---VSQKLKEI 370 Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSI 334 +E + + VDPPRSG++ + + + I+Y+SCNP+SL RDL Sbjct: 371 KE------------KPDVVIVDPPRSGINPKALEDIVKFNAEKIVYVSCNPESLVRDLKT 418 Query: 335 LST-THTIERLALFDQFPYTRHMECGVLLVRK 365 LS + ++++ D FP+T H+E VL+ RK Sbjct: 419 LSEDVYKVKKVKCVDMFPHTYHVETVVLIERK 450 >gi|330446947|ref|ZP_08310598.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328491138|dbj|GAA05095.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 439 Score = 249 bits (635), Expect = 6e-64, Method: Composition-based stats. Identities = 80/375 (21%), Positives = 151/375 (40%), Gaps = 37/375 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN-------LQIFRSEPIHYRMRAEFHIWH- 53 L ++ Q+ K L ++M F + + +SE HYR A F + Sbjct: 89 GCNLQHLSHQGQVIAKQQALTELMEKFAITEEGTTQVAPIVGQSE--HYRRCARFSVRML 146 Query: 54 DGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQ 113 + +Q+K+ + + + +++L+ + + + L I+ + + Sbjct: 147 PNGQMVFGFRKKQSKDIVDVTSCPVLATELDSLLPALRELLSGLKGRKH-LGHIELVNAD 205 Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANK-TKICLDRDYVDERLT 172 + + ++ R L + ++ + + L +++ ++ ++ Y D Sbjct: 206 NGRVLLI----RHLQPFNDKDFAAIKAFATEHQLMLFLAPSSDELEQVTGEQPYYD---- 257 Query: 173 VAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHF 231 + F Q N +N M+E + Q +L+L+CG GNFSL LAR Sbjct: 258 --IEDVRLTFSPKDFIQVNRAVNQKMVEQAINWLDVQPQDRVLDLFCGLGNFSLPLARSA 315 Query: 232 DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291 V+ VE V A N AN ++N + + E + +E + Sbjct: 316 KAVVGVEGVDEMVARATANAVANRLDNATFYQANLDEDVTKLVWAQE------------Q 363 Query: 292 FKTIFVDPPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDLS-ILSTTHTIERLALFDQ 349 F I +DP R+G +V P ++Y+SCNP +L RD +L + + RL + D Sbjct: 364 FDKILLDPARAGAAGVMQHIVNLAPSKVVYVSCNPATLARDSQILLQQGYKLARLGMMDM 423 Query: 350 FPYTRHMECGVLLVR 364 FP+T H+E L V+ Sbjct: 424 FPHTGHLESMALFVK 438 >gi|224369754|ref|YP_002603918.1| TrmA [Desulfobacterium autotrophicum HRM2] gi|223692471|gb|ACN15754.1| TrmA [Desulfobacterium autotrophicum HRM2] Length = 462 Score = 249 bits (635), Expect = 7e-64, Method: Composition-based stats. Identities = 74/391 (18%), Positives = 139/391 (35%), Gaps = 56/391 (14%) Query: 10 YEQQLAEKVDRLRQMMLAFQV-PNLQIFRSEP----IHYRMRAEFHIWHDG--------D 56 YE QL K + + + + ++++ P +R + EF + Sbjct: 89 YETQLEYKQRHVTESLEHIGLLKDVEVLPVIPSRKIFGFRNKMEFSCTTSRWLMPEDLEN 148 Query: 57 DLYHIMFDQQTK------ERMRIDYFMPGSLLINALMIEMMATIRLEPL----LRAKLFQ 106 F + ID + N +M + I + LR+ Sbjct: 149 PDIKKGFGLGLHVPGTFDRIIDIDKCLIQPDTGNQIMQVVRQYIVESGVPAYGLRSHEGF 208 Query: 107 IDYL----TSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLI-------GRA 155 +L +S + +V ++ D A L++ + + + Sbjct: 209 WRFLMLRSSSAFNTWMVNIVTSEENDALLIPLAEHLKNMFPSIVSIVNNVTAKKAGIATG 268 Query: 156 NKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LL 214 + K+ ++ E+L + NSF Q N + V + ++ Sbjct: 269 DYEKLLAGEQFIREKLGR----FTFEISANSFFQTNTAGAEQLYSLVSEYADLTGNETVV 324 Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274 +LY G G + L+ +V+ +EI + +V A+ N A N ++N + K+ + Sbjct: 325 DLYSGTGTIPIWLSDRAKKVVGIEIVESAVVDAKKNAALNQIDNCEFFVGDIKDVLPQLD 384 Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDL 332 + +DPPR G+ V V A I+Y+SCNP +L RDL Sbjct: 385 A---------------TCNVMIIDPPRVGMHKDVVAQVMAIAPKKIVYVSCNPATLARDL 429 Query: 333 SILSTTHTIERLALFDQFPYTRHMECGVLLV 363 +L + + ++ D FP+T H+E LL Sbjct: 430 GMLKERYRVVKVQPVDMFPHTFHIESVALLE 460 >gi|291539998|emb|CBL13109.1| 23S rRNA m(5)U-1939 methyltransferase [Roseburia intestinalis XB6B4] Length = 492 Score = 249 bits (635), Expect = 7e-64, Method: Composition-based stats. Identities = 90/412 (21%), Positives = 151/412 (36%), Gaps = 62/412 (15%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN------LQIFRSE-PIHYRMRAEFHIW-- 52 T YE+QL+ K +++ ++ A L I S P YR + EF Sbjct: 81 GCTFQSLPYEEQLSMKEQQVKDLIDAVITEENKGYEFLPIKASPRPKAYRNKMEFSFGDE 140 Query: 53 HDGDDLYHIMFDQQTK-ERMRIDYFMPGSLLINAL-----------MIEMMATIRLEPLL 100 + L M + + + + + + I +R L Sbjct: 141 YKDGPLALGMHKRGSFYDIVNVGECQIVDEDFRRVLKITLEYFKEKQIPFYHKLRHTGYL 200 Query: 101 RAKLFQIDYLTSQSDQAIVTLIYHRLL----DDAWRECAIR----------LRDALHARK 146 R L + T + +VT L + A E ++ L+ LH + Sbjct: 201 RHFLVRKAAKTGEILVDLVTTTQMEELSGENESALLEGWVKKLCEEKYDGVLKGILHTKN 260 Query: 147 YQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAAT 206 + + T I +D+ E L L ++ SF Q N+ + + Sbjct: 261 DSVADTIKNEGTDILFGQDFFYEELL----GLKFKITPFSFFQTNSLGAEVLYQTAREFI 316 Query: 207 KGIQGD-----LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261 D + +LY G G + +L+ +V+ VEI + +V AAR N A N + N + Sbjct: 317 GDALDDEANQTVFDLYSGTGTIAQILSPVAKKVIGVEIVEEAVVAARENAALNGLTNCEF 376 Query: 262 VRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHIL 319 + LK ID + I +DPPR G+ + + Y P ++ Sbjct: 377 IAGDV---------------LKVIDTIGEKPDYIVLDPPRDGIHPKALEKIIRYNVPQMV 421 Query: 320 YISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVRKPSGWH 370 YISC P SL RDL +L + ++++ D FP T ++E LL + H Sbjct: 422 YISCKPTSLARDLEVLQARGYKVKKVQCVDMFPSTGNVETVCLLSKLHEAKH 473 >gi|313158329|gb|EFR57731.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Alistipes sp. HGB5] Length = 469 Score = 249 bits (635), Expect = 7e-64, Method: Composition-based stats. Identities = 78/398 (19%), Positives = 143/398 (35%), Gaps = 60/398 (15%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPNLQ-----IFRSEPIHYRMRAEF----HIWHDGDDLY 59 YE+QL K +++R + L + + YR + EF W +++ Sbjct: 91 PYEEQLRFKTEQVRDQLTRIGKIALPQIAPCLGSEQTRFYRNKLEFTFADRRWLTREEVE 150 Query: 60 HI---------------MFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLL---- 100 MFD+ + ID N + E Sbjct: 151 SGTDFDAAPALGFHIPNMFDK----VLDIDKCWLQPDPSNDIRTETRRFCIENGYTFHNA 206 Query: 101 ---RAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGR--- 154 R + + T+ + + +V +++ + L ++ Sbjct: 207 REHRGLMRNMIVRTASTGEVMVIVVFGEDDRERIAALLDHLAANFPQITSLFYIVNTKFN 266 Query: 155 ---ANKTKICL-DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ 210 + +C +D++ E + L ++ SF Q N+ + + Sbjct: 267 DSVGDLDPVCYKGKDHIVEEM----EGLRFKVGPKSFYQTNSAQAYELYKVAREFADLKP 322 Query: 211 GDLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269 D+L +LY G G + A RV+ VE ++ A+ N N + N K+ Sbjct: 323 EDVLYDLYTGTGTIANFCAARCSRVVGVEYVPEAIADAKVNSQINGIGNTVFYAGDMKQV 382 Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDS 327 + R I +DPPR+G+D+ +G++ A I+Y+SCNP + Sbjct: 383 LSD-----------GFVAANGRPDVIILDPPRAGVDEPVIGVILRAAPRRIVYVSCNPAT 431 Query: 328 LCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 RDL++L + +E + D FP+T H+E V LVR+ Sbjct: 432 QARDLALLDADYRVEAVQPVDMFPHTHHVENVVKLVRR 469 >gi|307610159|emb|CBW99707.1| hypothetical protein LPW_14751 [Legionella pneumophila 130b] Length = 444 Score = 248 bits (634), Expect = 8e-64, Method: Composition-based stats. Identities = 85/378 (22%), Positives = 153/378 (40%), Gaps = 34/378 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSE----PIHYRMRAEFHIWHDGDD 57 +L E+Q+ K L ++ + Q S P +YR +A Sbjct: 85 GCSLQHMSAEEQIRFKQSHLLDLLSRYGHTAPQTVLSPLTSHPWNYRNKARLSTRFVEKK 144 Query: 58 LYHIMFDQQTKER---MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQS 114 ++ ++ I+ + I+ ++ + I + + QI+ + Sbjct: 145 QSTMVGFRERNNPRFITEINQCPILNSKIDTDIVHLRKLIDTMED-KQCIAQIEVAAGDN 203 Query: 115 DQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD----RDYVDER 170 + A++ R L + +++R +Y+I L + C Y++ Sbjct: 204 EVALI----FRNLTPLTEQDELKIRKFAQQFQYKIFLQPGGLDSVFCFYPSDAHAYLNYE 259 Query: 171 LTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLAR 229 L T + N FTQ NA +N M++ + + D +L+L+CG GNFSL +A+ Sbjct: 260 LPDYQITFQFH--PNDFTQVNAELNRKMVKQAIQLMELKNSDIVLDLFCGLGNFSLPMAK 317 Query: 230 HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHS 289 H RV+ VE + VE A N +NH+ NV + + + ++ + Sbjct: 318 HCSRVIGVEGNRNMVERAYMNAKSNHITNVDFYAANLDDVMEV------------RNLVN 365 Query: 290 YRFKTIFVDPPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDLSIL--STTHTIERLAL 346 F + +DPPRSG + + P I+Y+SCNP +L RD IL + + + Sbjct: 366 TSFSKVLIDPPRSGALEIVKQIDAIDPERIVYVSCNPITLARDTDILVNQKGYVLITAGV 425 Query: 347 FDQFPYTRHMECGVLLVR 364 D FP+T H+E L + Sbjct: 426 MDMFPHTAHVESIALFQK 443 >gi|28899340|ref|NP_798945.1| 23S rRNA 5-methyluridine methyltransferase [Vibrio parahaemolyticus RIMD 2210633] gi|260363768|ref|ZP_05776537.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio parahaemolyticus K5030] gi|260878969|ref|ZP_05891324.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio parahaemolyticus AN-5034] gi|260898314|ref|ZP_05906810.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio parahaemolyticus Peru-466] gi|50401546|sp|Q87LP5|RUMA_VIBPA RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|28807576|dbj|BAC60829.1| putative TrmA family RNA methyltransferase [Vibrio parahaemolyticus RIMD 2210633] gi|308085240|gb|EFO34935.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio parahaemolyticus Peru-466] gi|308090505|gb|EFO40200.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio parahaemolyticus AN-5034] gi|308111237|gb|EFO48777.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio parahaemolyticus K5030] Length = 439 Score = 248 bits (634), Expect = 8e-64, Method: Composition-based stats. Identities = 81/371 (21%), Positives = 150/371 (40%), Gaps = 30/371 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRS---EPIHYRMRAEFHIWHDGD-- 56 L Y+QQL K LRQ+M F ++ + E + YR RA ++ D Sbjct: 90 GCDLQHLNYDQQLTHKQQTLRQLMRKFAGSDIDLDAPVLGESLGYRRRARVSLFVDKKTR 149 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116 L+ +Q+K+ ++ + +N L+ E+ + ++ +L ++ + + Sbjct: 150 QLHFGFRKKQSKQIAQVTDCPVLAPELNVLLPEIYSVLKAFKK-PDQLGHVELVLGDNGP 208 Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGR 176 I L DD L + + + L+ ++ + E Sbjct: 209 CITLRHLSNLADDE----VSALVELATRHQASLYLMPETDQLNLVAG-----EVPFYQEA 259 Query: 177 TLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVL 235 + N+F Q N +N M+E + + +L+L+CG GNFSL +A+ V+ Sbjct: 260 GVKIPFDPNNFIQVNQAVNQKMVEQAIKWLDPQSDERVLDLFCGLGNFSLPIAKRAKHVV 319 Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295 VE VE A N + N +NN + + ++ + +F + Sbjct: 320 GVEGVAEMVEKASNNASLNQINNAQFYHANLEQDFDGQA------------WAAEKFDKV 367 Query: 296 FVDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYT 353 +DP R+G + ++Y+SCNP +L RD S+L + + +L + D FP+T Sbjct: 368 LLDPARAGASGIIDQVSALGAQRVVYVSCNPATLARDSQSLLDQGYQLTKLGMLDMFPHT 427 Query: 354 RHMECGVLLVR 364 H+E L + Sbjct: 428 SHLESMALFEK 438 >gi|225388648|ref|ZP_03758372.1| hypothetical protein CLOSTASPAR_02384 [Clostridium asparagiforme DSM 15981] gi|225045246|gb|EEG55492.1| hypothetical protein CLOSTASPAR_02384 [Clostridium asparagiforme DSM 15981] Length = 467 Score = 248 bits (634), Expect = 8e-64, Method: Composition-based stats. Identities = 87/403 (21%), Positives = 158/403 (39%), Gaps = 64/403 (15%) Query: 2 SGTLLID-QYEQQLAEKVDRLRQMMLAFQVP---NLQIFRSEPI--HYRMRAEFHIWHD- 54 G + YE+QL K +++ ++ P Q + PI YR + EF + Sbjct: 79 GGCVYQSLPYEEQLKIKESQVKALLDPVVKPGSYEFQGIKGSPISDGYRNKMEFSFGDEF 138 Query: 55 -GDDLYHIMFDQQTKERMRIDYFMPGSLLIN---------------ALMIEMMATIRLEP 98 G L M + + + PG +++ L + + + Sbjct: 139 KGGPLALGMHKRGSFYDI---VTTPGCRIVHGDFCKILESTRAYFAELGTAFLGKLSHKG 195 Query: 99 LLRAKLFQ---------IDYLTSQSDQAIVTLIYHRLLDDAWRECAI------RLRDALH 143 LR L + +D +T+ + + T + + W+E + R LH Sbjct: 196 YLRHLLVRRAVKTGEILVDLVTTTQTEYLGTDMQEDQVLGGWKERLLGLELEGRFAGILH 255 Query: 144 ARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL 203 + + ++++T + +DY E L L +R SF Q N+ + + Sbjct: 256 TLNDSLADVVQSDRTDVLYGQDYFYEELL----GLRFRISPFSFFQTNSLGAEVLYDMAR 311 Query: 204 AATKGIQGDLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262 + + ++ +LY G G + +LA +V+ VEI + +VEAAR N N + N + + Sbjct: 312 SYVGETKDKVVFDLYSGTGTIAQILAPVAKKVVGVEIVEEAVEAARMNAKLNGLENCEFL 371 Query: 263 RMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILY 320 LK ID + I +DPPR G+ + + ++Y Sbjct: 372 AGDV---------------LKVIDEIQDKPDLIMLDPPRDGIHPKALNKIIEFGVERMVY 416 Query: 321 ISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLL 362 ISC P SL RDL +L + +E+ D FP T ++E +++ Sbjct: 417 ISCKPTSLARDLVVLQERGYRVEKGGAVDMFPGTGNVEVVIMM 459 >gi|167757279|ref|ZP_02429406.1| hypothetical protein CLORAM_02829 [Clostridium ramosum DSM 1402] gi|167703454|gb|EDS18033.1| hypothetical protein CLORAM_02829 [Clostridium ramosum DSM 1402] Length = 378 Score = 248 bits (634), Expect = 8e-64, Method: Composition-based stats. Identities = 75/389 (19%), Positives = 151/389 (38%), Gaps = 48/389 (12%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWHDGDD 57 S + Y++QL K D ++++ ++ + I P YR + H Sbjct: 11 SCKYINTDYQRQLKIKTDYCKKLLKDNKLDMYEVKDTIGMGHPYEYRNKIIVAFNH---R 67 Query: 58 LYHIMFDQQTKERMRIDYFMPGSLL-----------INALMIEMMATIRLEPLLRAKLFQ 106 +++ + + + D + L + + + R LLR L + Sbjct: 68 YEFGFYEEDSHKIIPYDRCLLHEELSDMIIKKIQSLLKRYRVSIYDENRNRGLLRHVLIR 127 Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGR-------ANKTK 159 +T+Q+ +V L+ + + + L + K + + + N+ K Sbjct: 128 RALVTNQT---MVVLVCNDNVFKGSKNFCNELIKNFPSIKTVVLNVNKRKTSVVLGNEEK 184 Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGI-QGDLLELYC 218 I + ++ + L L ++ SF Q N + L Q +++ YC Sbjct: 185 ILYGKGFIVDELC----GLKFKISPKSFYQINHQQCELLYSKALDLLNLTGQERIIDAYC 240 Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278 G G +++A V VE+ K +V+ A N N + N+K + + F + ++++ Sbjct: 241 GIGTIGMIVANRTKEVTGVELNKDAVKDAINNAKMNKIENIKFINDDASAFMIKLAKQKQ 300 Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILS 336 + + +DPPRSG + V+ ++YISC+P + RD+ + Sbjct: 301 ------------KVDCVIMDPPRSGSTQEFMDAVKILNPKQVVYISCDPSTQVRDIKYFA 348 Query: 337 T-THTIERLALFDQFPYTRHMECGVLLVR 364 + E + D FP+T H+E VLL + Sbjct: 349 KIGYRGEVMYPVDMFPHTSHVETIVLLSK 377 >gi|78044405|ref|YP_359958.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Carboxydothermus hydrogenoformans Z-2901] gi|77996520|gb|ABB15419.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Carboxydothermus hydrogenoformans Z-2901] Length = 441 Score = 248 bits (634), Expect = 9e-64, Method: Composition-based stats. Identities = 85/383 (22%), Positives = 140/383 (36%), Gaps = 36/383 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEP----IHYRMRAEFHIWHDGDD 57 +L YEQQL K ++ +M + I P YR + F + Sbjct: 76 GCSLQNLDYEQQLVLKKTKVYNIMKKIGRIDAPINSVLPNFAFYRYRQKVHFTFGSSQNK 135 Query: 58 LYHIMFDQQTKERMRIDYFMPGSLL---INALMIEMMATIRLEPL------LRAKLFQID 108 L FD++ + + + + E++ +L+ LR + + Sbjct: 136 LAIGYFDRK-NNWFPVTDCLIADKSLVEVAHYVTEILDAFKLKAYFNDAGVLRHLVVRKS 194 Query: 109 YLTSQSDQAI--VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY 166 T + I V L ++ A ++ + T + Y Sbjct: 195 STTGEIQVVITAVKLNFNVKEIAAKILLNPEIQSLTFHENPKKTREVFGKGTAVTFGTRY 254 Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSL 225 + E L + YR SF Q N + L G + + Y G G+ +L Sbjct: 255 ITEELL----GISYRLTPLSFFQINPVQAEKIYRIALDYLDLGKTDMVFDGYSGVGSLTL 310 Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285 AR V+ VE + +VE A+ N N + NV +E +L + Sbjct: 311 PAARIAASVVGVEEIRDAVEVAKTNAKLNGIANVNFFAGKVEE------------KLPWL 358 Query: 286 DIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCRDLSILST-THTIE 342 YRF I +DPPR G+ + +++ P I+Y+SCNP + RDL IL+ + Sbjct: 359 LKKGYRFNKIILDPPREGVKKEVLEEIIKLNPERIVYVSCNPATQARDLKILAETGYYPV 418 Query: 343 RLALFDQFPYTRHMECGVLLVRK 365 + D F T H+E VLL +K Sbjct: 419 EITPVDMFSQTMHVENVVLLKKK 441 >gi|240146223|ref|ZP_04744824.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Roseburia intestinalis L1-82] gi|257201634|gb|EEU99918.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Roseburia intestinalis L1-82] Length = 561 Score = 248 bits (633), Expect = 1e-63, Method: Composition-based stats. Identities = 90/406 (22%), Positives = 150/406 (36%), Gaps = 62/406 (15%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN------LQIFRSE-PIHYRMRAEFHIW-- 52 T YE+QL+ K +++ ++ A L I S P YR + EF Sbjct: 81 GCTFQSLPYEEQLSMKEQQVKDLIDAVITEENKGYEFLPIKASPRPKAYRNKMEFSFGDE 140 Query: 53 HDGDDLYHIMFDQQTK-ERMRIDYFMPGSLLINAL-----------MIEMMATIRLEPLL 100 + L M + + + + + + I +R L Sbjct: 141 YKDGPLALGMHKRGSFYDIVNVGECQIVDEDFRRVLKITLEYFKERQIPFYHKLRHTGYL 200 Query: 101 RAKLFQIDYLTSQSDQAIVTLIY--------HRLLDDAWRECAIR------LRDALHARK 146 R L + T + +VT +L D W + L+ LH + Sbjct: 201 RHFLVRKAAKTGEILVDLVTTTQTDGLGAETESILLDGWVKALCEETYDGVLKGILHTKN 260 Query: 147 YQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAAT 206 + + T I +D+ E L L ++ SF Q N+ + + Sbjct: 261 DSVADTIKNEGTDILFGQDFFYEELL----DLKFKITPFSFFQTNSLGAEVLYQTAREFI 316 Query: 207 KGIQGD-----LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261 D + +LY G G + +L+ +V+ VEI + +V AAR N A N + N + Sbjct: 317 GDALDDEASQTVFDLYSGTGTIAQILSPVAKKVIGVEIVEEAVVAARENAALNGLTNCEF 376 Query: 262 VRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHIL 319 + LK ID + I +DPPR G+ + + Y P ++ Sbjct: 377 IAGDV---------------LKVIDKIEEKPDYIVLDPPRDGIHPKALEKIIRYNVPQMV 421 Query: 320 YISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364 YISC P SL RDL +L + ++++ D FP T ++E VLL + Sbjct: 422 YISCKPTSLARDLEVLQARGYKVKKVQCVDMFPSTGNVETVVLLSK 467 >gi|116334661|ref|YP_796188.1| tRNA (uracil-5-)-methyltransferase related enzyme [Lactobacillus brevis ATCC 367] gi|116100008|gb|ABJ65157.1| tRNA (uracil-5-)-methyltransferase related enzyme [Lactobacillus brevis ATCC 367] Length = 487 Score = 248 bits (633), Expect = 1e-63, Method: Composition-based stats. Identities = 77/390 (19%), Positives = 148/390 (37%), Gaps = 48/390 (12%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPN-------LQIFRSEPIHYRMRAEFHIWHDGDD 57 L Y QLA K D + Q + +Q + +P YR +A+F + + + Sbjct: 116 LEHLDYPAQLAFKRDVVAQALERYQPEGFHSYDLRPTLGMKDPYGYRNKAQFQVRRNAEG 175 Query: 58 LY-HIMFDQQTKERMRIDYF-----------MPGSLLINALMIEMMATIRLEPLLRAKLF 105 ++ +++ + + + ++ L + + + +++ + Sbjct: 176 QVEAGLYAERSHDLIDLPTCSVQMPVTMTVMRAVVAMLQDLDMPIYDEEQKSGIVKTLVV 235 Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIG-------RANKT 158 + + +D + I + RE R+ + L +Q I + T Sbjct: 236 R---AAAHTDDVQLVFITNSPKLPHKRELLERIANELPQVTSVMQNINPGETSLVWGDDT 292 Query: 159 KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG-DLLELY 217 + + + E+L L ++ +F Q N + + A G +++ Y Sbjct: 293 RHLAGAEAITEKLG----DLTFKLSARAFLQLNPAQTEVLYDEAKKALDLQPGQTVVDAY 348 Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277 G G L LA V +EI +V+ A N AAN + N ++++ Sbjct: 349 AGIGTIGLSLADVAAEVRGMEIIPEAVDDANANAAANGITNAHYEVGTAEDL-------- 400 Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSIL 335 L + +R I VDPPR+GLD + + A ++Y+SCNP +L +DL L Sbjct: 401 ----LPKWVMAGFRPDAIVVDPPRTGLDATLIETILAIRPSKLVYVSCNPSTLAKDLVDL 456 Query: 336 STTHTIERLALFDQFPYTRHMECGVLLVRK 365 + + +E + D P T E V L R+ Sbjct: 457 TADYRVEYIQSVDMMPQTARCEAVVKLTRR 486 >gi|257792631|ref|YP_003183237.1| RNA methyltransferase, TrmA family [Eggerthella lenta DSM 2243] gi|257476528|gb|ACV56848.1| RNA methyltransferase, TrmA family [Eggerthella lenta DSM 2243] Length = 438 Score = 248 bits (633), Expect = 1e-63, Method: Composition-based stats. Identities = 82/408 (20%), Positives = 135/408 (33%), Gaps = 68/408 (16%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPN---LQIFRSEPIHYRMRAEFHI-------------- 51 Y QQLA K R+ ++ + + EP YR + Sbjct: 37 PYAQQLASKDTRVAELFADVADASALRPILGMDEPYCYRNKVVSPYAPGRKLQGSANARA 96 Query: 52 --------WHDGDDLYH-------IMFDQQTKERMRIDYFMPGSL-----------LINA 85 DG M+ + + D + + L+ Sbjct: 97 GKGRDARGGRDGKRAQKPRREILCGMYAAGSHRIVPTDGCLIENEEAKRIIRTVRDLMPR 156 Query: 86 LMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHAR 145 IE LR + ++ + S + +VTL+ + A R L Sbjct: 157 FGIEPYREDSGTGFLRHAVVRVGH---TSGEILVTLVTNGRAFPASRAFCRELVRRCPRI 213 Query: 146 KYQIQLIGRANKTKICLDRD----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEW 201 +Q + +T + L Y + L +R SF Q NA + E Sbjct: 214 TSVVQNVN-ERQTNVILGEREQTLYGPGFILDKLCGLSFRISSQSFYQVNAVQTEVLYER 272 Query: 202 VLA-ATKGIQGDLLELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAARYNIAANHVNNV 259 + A ++ YCG G LV A+ +V+ V+ +V AR N N V N Sbjct: 273 AIDLAGFTGSETAIDAYCGTGTIGLVAAKRGARQVIGVDTVASAVRDARENAKHNGVENA 332 Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPH 317 + + F + + + +DPPR+G + + A Sbjct: 333 RFAVGDAGAFMR------------ERAAAGDAVDVLLMDPPRAGSSEEFLAAAVTLAPRR 380 Query: 318 ILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364 I+YISCNP + RDL+ L + + + D FP+T H+E L+ R Sbjct: 381 IVYISCNPTTQVRDLAFLRQRGYAVRTVQPVDMFPHTDHIETIALVER 428 >gi|301066818|ref|YP_003788841.1| tRNA (uracil-5-)-methyltransferase-like protein [Lactobacillus casei str. Zhang] gi|300439225|gb|ADK18991.1| tRNA (uracil-5-)-methyltransferase related enzyme [Lactobacillus casei str. Zhang] Length = 455 Score = 248 bits (633), Expect = 1e-63, Method: Composition-based stats. Identities = 73/383 (19%), Positives = 137/383 (35%), Gaps = 47/383 (12%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPN-------LQIFRSEPIHYRMRAEFHIWHDGDDLYHIM 62 Y QL K D + Q + F+ I ++P HYR +A+F + + + Sbjct: 91 YPAQLRFKRDVVAQSLAKFKPTGWTHYDLRPTIGMAQPTHYRNKAQFPVRVIDGHVRAGL 150 Query: 63 FDQQTKERMRIDYFMPG-----------SLLINALMIEMMATIRLEPLLRAKLFQIDYLT 111 + + + + F+ ++ L I + + +++ + + + T Sbjct: 151 YAPNSHHLIPLTKFLTQAPLTMKVVTTLCQILEQLQIPIYNEKKRSGIVKTLVVRESFAT 210 Query: 112 SQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIG-------RANKTKICLDR 164 + VT I + E + L Q I ++++ Sbjct: 211 K---EVQVTFITNSPKLPHEGELLNAIATQLPMVVSIAQNINPGETSLIWGKESRLLAGL 267 Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELYCGNGNF 223 Y+ E L ++ +F Q N + A G L++ YCG G Sbjct: 268 PYIQETLL----GRTFQLSPQAFLQLNPKQTETLYTLAAKALDLGPHDTLIDAYCGIGTV 323 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 + LA+ + ++ + A+ N AN + N +++ +E Sbjct: 324 GISLAKGNQPIYGMDTIAEGIADAKANAKANGLTNAHYSVGKAEDIFPKWVQE------- 376 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILSTTHTI 341 + + VDPPR+GL+ A + + P +YISCNP +L RDL L+ + + Sbjct: 377 -----GMKPDAVIVDPPRAGLERAFIDALLELDPPKFVYISCNPSTLARDLVFLTKRYKV 431 Query: 342 ERLALFDQFPYTRHMECGVLLVR 364 + + D FP T E V R Sbjct: 432 DWIQSIDMFPQTARCEAVVKFTR 454 >gi|319937203|ref|ZP_08011610.1| hypothetical protein HMPREF9488_02445 [Coprobacillus sp. 29_1] gi|319807569|gb|EFW04162.1| hypothetical protein HMPREF9488_02445 [Coprobacillus sp. 29_1] Length = 452 Score = 248 bits (633), Expect = 1e-63, Method: Composition-based stats. Identities = 75/390 (19%), Positives = 154/390 (39%), Gaps = 45/390 (11%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIF----RSEPIHYRMRAEFHIWHDGDD 57 L Q K R++ + ++++ +P +YR + + + G+ Sbjct: 79 GCHLQHLSMAGQQNFKTKRVKDTLQRIGHCHVEVLPCLMMEKPWYYRNKVQVPVGLHGNT 138 Query: 58 LYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKLFQ 106 + + Q + + + ++ + N L+ + ++ + +R L + Sbjct: 139 IVTGFYKQHSNDIVPMETCYIQNNESNRLVNRVRNLLQETQENPYDKMSHQGNIRHILVK 198 Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGR-------ANKTK 159 S Q ++ LI ++ L++ K IQ I + +K K Sbjct: 199 YGL---TSQQLMLVLITYQDSIKNINTIVKTLKNEFPDLKTIIQNINKKHDNVILGDKVK 255 Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYC 218 + Y+++ L IYR SF Q N H+ + + A ++++ YC Sbjct: 256 VIDGPGYIEDELLGN----IYRISVKSFYQVNPKQVEHLYQKAIEFADLKPTDEVIDAYC 311 Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278 G G SL +A++ +V VEI + ++ A+ N NHV+NV+ + EF ++++ Sbjct: 312 GIGTISLSMAKYVKKVYGVEIVEQAIIDAKENAQRNHVSNVEFTCQDAGEFMVEFAKQQK 371 Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILS 336 + VDPPR G + + + I+Y+SC+ + RD++ L Sbjct: 372 ------------HIDVVMVDPPRKGCSQVFLDQLVTLSPDKIIYVSCDVATQARDIAYLQ 419 Query: 337 T-THTIERLALFDQFPYTRHMECGVLLVRK 365 + ++ D FP T ++E + L +K Sbjct: 420 EHNYQVDICQPVDMFPQTHNIENIIRLSKK 449 >gi|317488920|ref|ZP_07947450.1| hypothetical protein HMPREF1023_01149 [Eggerthella sp. 1_3_56FAA] gi|316911994|gb|EFV33573.1| hypothetical protein HMPREF1023_01149 [Eggerthella sp. 1_3_56FAA] Length = 405 Score = 248 bits (633), Expect = 1e-63, Method: Composition-based stats. Identities = 84/408 (20%), Positives = 139/408 (34%), Gaps = 68/408 (16%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPN---LQIFRSEPIHYRMRAEFHI-------------- 51 Y QQLA K R+ ++ + + EP YR + Sbjct: 4 PYAQQLASKDTRVAELFADVADASALRPILGMDEPYCYRNKVVSPYAPGRKLQGSANARA 63 Query: 52 --------WHDGDDLYH-------IMFDQQTKERMRIDYFMPGSL---LINALMIEMMAT 93 DG M+ + + D + + I + ++M Sbjct: 64 GKGRDARGGRDGKRAQKPRREILCGMYAAGSHRIVPTDGCLIENEEAKRIIRTVRDLMPR 123 Query: 94 IRLEPL--------LRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHAR 145 LEP LR + ++ + S + +VTL+ + A R L Sbjct: 124 FGLEPYREDSGTGFLRHAVVRVGH---TSGEILVTLVTNGRAFPASRAFCRELVRRCPRI 180 Query: 146 KYQIQLIGRANKTKICLDRD----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEW 201 +Q + +T + L Y + L +R SF Q NA + E Sbjct: 181 TSVVQNVN-ERQTNVILGEREQTLYGPGFILDKLCGLSFRISSQSFYQVNAVQTEVLYER 239 Query: 202 VLA-ATKGIQGDLLELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAARYNIAANHVNNV 259 + A ++ YCG G LV A+ +V+ V+ +V AR N N V N Sbjct: 240 AIDLAGFTGSETAIDAYCGTGTIGLVAAKRGARQVIGVDTVASAVRDARENAKHNGVENA 299 Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPH 317 + + F + + + +DPPR+G + + A Sbjct: 300 RFAVGDAGAFMR------------ERAAAGDAVDVLLMDPPRAGSSEEFLAAAVTLAPRR 347 Query: 318 ILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364 I+YISCNP + RDL+ L + + + D FP+T H+E L+ R Sbjct: 348 IVYISCNPTTQVRDLAFLRQRGYAVRTVQPVDMFPHTDHIETIALVER 395 >gi|260682153|ref|YP_003213438.1| putative tRNA (Uracil-5-)-methyltransferase [Clostridium difficile CD196] gi|260208316|emb|CBA60769.1| putative tRNA (Uracil-5-)-methyltransferase [Clostridium difficile CD196] Length = 456 Score = 248 bits (633), Expect = 1e-63, Method: Composition-based stats. Identities = 81/393 (20%), Positives = 145/393 (36%), Gaps = 49/393 (12%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLA-----FQVPNLQIFRSEPIHYRMRAE--FHIWHD 54 TLL YE+QL K ++ + L FQ ++ E +YR + E F Sbjct: 84 GCTLLSVPYEKQLEIKEKQVMDLFLKQDLFGFQFLGIE-GSPENKYYRNKMEYTFGDEVK 142 Query: 55 GDDLYHIMFDQQTKERMR-IDYFMPGSLLI-----------NALMIEMMATIRLEPLLRA 102 L + + ++ ++ M N + T+ + LR Sbjct: 143 NGPLTLGLHKKGKHIDIQTVEECMLVDEDFSKILVSSVEFFNEKKLPYYRTMNHKGYLRH 202 Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAI------RLRDALHARKYQIQLIGRAN 156 + + T++ IVT + +++ + L LH + + + Sbjct: 203 LVVRKGIHTNEIMVNIVTSSQEDFDMNEFKDMLLGIDLKAELVGVLHTINDGLADAVQCD 262 Query: 157 KTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-E 215 + ++ RDY+ E + L ++ SF Q N + ++ + Sbjct: 263 ELRVLYGRDYIQEEIL----GLKFKISPFSFFQTNTKGAEVLYSIARDFIGDYNDKVVFD 318 Query: 216 LYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275 LY G G+ V+A +V +EI + +V AA N N + N + + + + ++ Sbjct: 319 LYSGTGSIGQVMAGAAKKVYGIEIVEEAVVAANENAKLNGLTNCEFIAGDVAKVVKDLK- 377 Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLS 333 + I VDPPR G+ + + + I+YISCNP SL DL Sbjct: 378 --------------DKPDLIIVDPPRPGIHKDAIRDICGFGAKEIVYISCNPKSLVVDLV 423 Query: 334 ILST-THTIERLALFDQFPYTRHMECGVLLVRK 365 + I+ + D FP T H E V L+R+ Sbjct: 424 DFKGYGYEIKMVKCMDMFPNTPHCETVVKLIRE 456 >gi|238917477|ref|YP_002930994.1| hypothetical protein EUBELI_01555 [Eubacterium eligens ATCC 27750] gi|238872837|gb|ACR72547.1| Hypothetical protein EUBELI_01555 [Eubacterium eligens ATCC 27750] Length = 470 Score = 248 bits (632), Expect = 1e-63, Method: Composition-based stats. Identities = 94/399 (23%), Positives = 147/399 (36%), Gaps = 54/399 (13%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHI---WHD 54 T YE+QL K ++ +++ L I YR + EF + D Sbjct: 91 GCTYQTVAYEEQLKIKSTQVEKLLREVVSGELPFEGIIGSPVTEEYRNKMEFSFGDEYKD 150 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMA-----------TIRLEPLLRAK 103 G + + + + ++ + + E LR Sbjct: 151 GPLALGLHKRNSMYDIVPVTECKIIDEDYRKILTCVQDYAIEKELPFQHKLSHEGYLRHL 210 Query: 104 LFQIDYLTSQSDQAIVTL--IYHRLLDDAWR----ECAIRLRDALHARKYQIQLIGRANK 157 L + T Q IVT I H + R E L LH + K Sbjct: 211 LVRKSVKTGQILVDIVTTTQIEHDFTELVNRLTSIEYKGTLTGVLHTFNDSLADAVINEK 270 Query: 158 TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML----EWVLAATKGIQGD- 212 T++ DY++E L L ++ SF Q N+ + E+VL+ G D Sbjct: 271 TELLYGHDYIEEELL----GLRFKITPFSFFQTNSLGAEVLYSKAREYVLSGGFGDVADS 326 Query: 213 ---LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269 + +LY G G + +L+ +V+ VEI +VEAA+ N A N + N + + Sbjct: 327 KPVIYDLYTGTGTIAQMLSPVASKVIGVEIVAEAVEAAKKNAAQNGLTNCEFIADDV--- 383 Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDS 327 LK +D + I +DPPR G+ + + ++YISC P S Sbjct: 384 ------------LKALDNIEIKPDFIVLDPPRDGIHPKALEKIIDYGVDRMVYISCKPTS 431 Query: 328 LCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVRK 365 L RDL L + +E+ D FP T H+E LL RK Sbjct: 432 LARDLVTLQERGYKVEKCCCVDMFPNTGHVESVCLLSRK 470 >gi|54294503|ref|YP_126918.1| 23S rRNA 5-methyluridine methyltransferase [Legionella pneumophila str. Lens] gi|59800218|sp|Q5WW81|RUMA_LEGPL RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|53754335|emb|CAH15812.1| hypothetical protein lpl1572 [Legionella pneumophila str. Lens] Length = 444 Score = 248 bits (632), Expect = 1e-63, Method: Composition-based stats. Identities = 84/378 (22%), Positives = 151/378 (39%), Gaps = 34/378 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSE----PIHYRMRAEFHIWHDGDD 57 +L E+Q+ K L ++ + Q S P +YR +A Sbjct: 85 GCSLQHMSAEEQIRFKQSHLLDLLSRYGHTAPQTVLSPLTSHPWNYRNKARLSTRFVEKK 144 Query: 58 LYHIMFDQQTKER---MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQS 114 ++ ++ I+ + I+ ++ + I + + QI+ + Sbjct: 145 QSTMVGFRERNNPRFITEINQCPILNSKIDTDIVHLRKLIDTMED-KQCIAQIEVAAGDN 203 Query: 115 DQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD----RDYVDER 170 + A++ R L + ++R +Y++ L + C Y+ Sbjct: 204 EVALI----FRNLTPLTEQDESKIRKFAQQFQYKVFLQPGGLDSVFCFYPSDAHAYLSYE 259 Query: 171 LTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLAR 229 L T + N FTQ NA +N M++ + + D +L+L+CG GNFSL +A+ Sbjct: 260 LPDYQITFQFH--PNDFTQVNAELNRKMVKQAIQLMELKNSDIVLDLFCGLGNFSLPMAK 317 Query: 230 HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHS 289 H RV+ VE + VE A N +NH+ NV + + + ++ + Sbjct: 318 HCSRVIGVEGNRNMVERAYMNAKSNHITNVDFYAANLDDVMEV------------RNLVN 365 Query: 290 YRFKTIFVDPPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDLSIL--STTHTIERLAL 346 F + +DPPRSG + + P I+Y+SCNP +L RD IL + + + Sbjct: 366 TSFSKVLIDPPRSGALEIVKQIDSIDPERIVYVSCNPITLARDTDILVNQKGYVLITAGV 425 Query: 347 FDQFPYTRHMECGVLLVR 364 D FP+T H+E L + Sbjct: 426 MDMFPHTAHVESIALFQK 443 >gi|309389832|gb|ADO77712.1| RNA methyltransferase, TrmA family [Halanaerobium praevalens DSM 2228] Length = 451 Score = 248 bits (632), Expect = 1e-63, Method: Composition-based stats. Identities = 73/388 (18%), Positives = 151/388 (38%), Gaps = 41/388 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAF-QVPNLQI----FRSEPIHYRMRAEFHIW-HDG 55 L Y+++L K + ++Q+ + N ++ + YR +A+F + ++ Sbjct: 80 GCQLQHIDYQKELEFKQNNIKQLFKRIAGIENFELKDVLAADDDFRYRNKAQFPLKLNEE 139 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIR-----------LEPLLRAKL 104 + + + +++ + + + LIN ++ + + L+ LLR + Sbjct: 140 EQITAGFYQRKSHDIVPNHNCLIQHPLINRILKLTLEELNKFQLSVYNEDTLQGLLRHLV 199 Query: 105 FQIDYLTSQSDQAIVTL----IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKI 160 ++ T+Q+ +VT I L+ L+ + + + + + Sbjct: 200 IRVGTCTNQALLVLVTNGDDFIDKNLIARTLMRKIPELKGVVQNINNENTNVIFGKRDIL 259 Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCG 219 + + E + Y SF Q N + + Q ++++ + G Sbjct: 260 LAGQAKITEYIGAKA----YFISARSFFQVNTLQAKKLYDTAAKYLDSKQEAEVIDAFSG 315 Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279 G+ + L+ ++ +E K +VE A+ N N +NN++ + +E Sbjct: 316 TGSIGIYLSDKAKKIYGIESLKAAVEDAQKNAELNQINNIEFKLGMVAAKLPVLLKEN-- 373 Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILST 337 + +TI DPPR GL+ T+ ++ I+YISCNP + RDL L Sbjct: 374 -----------KIETIIFDPPRKGLNQKTIELLLENELKKIIYISCNPATQARDLKKLKK 422 Query: 338 THTIERLALFDQFPYTRHMECGVLLVRK 365 + + + D FP T H+E LL K Sbjct: 423 KYQLVEIQPVDLFPQTYHIESVALLKLK 450 >gi|126697975|ref|YP_001086872.1| putative tRNA (Uracil-5-)-methyltransferase [Clostridium difficile 630] Length = 455 Score = 248 bits (632), Expect = 1e-63, Method: Composition-based stats. Identities = 82/395 (20%), Positives = 146/395 (36%), Gaps = 49/395 (12%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLA-----FQVPNLQIFRSEPIHYRMRAE--FHIWHD 54 TLL YE+QL K ++ + L FQ ++ E +YR + E F Sbjct: 81 GCTLLSVPYEKQLEIKEKQVMDLFLKQDLFGFQFLGIE-GSPENKYYRNKMEYTFGDEVK 139 Query: 55 GDDLYHIMFDQQTKERMR-IDYFMPGSLLI-----------NALMIEMMATIRLEPLLRA 102 L + + ++ ++ M N + T+ + LR Sbjct: 140 NGPLTLGLHKKGKHIDIQTVEECMLVDEDFSKILVSSVEFFNEKKLPYYRTMNHKGYLRH 199 Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAI------RLRDALHARKYQIQLIGRAN 156 + + T++ IVT + +++ + L LH + + + Sbjct: 200 LVVRKGIHTNEIMVNIVTSSQEDFDMNEFKDMLLGIDLKAELVGVLHTINDGLADAVQCD 259 Query: 157 KTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-E 215 + ++ RDY+ E + L ++ SF Q N + ++ + Sbjct: 260 ELRVLYGRDYIQEEIL----GLKFKISPFSFFQTNTKGAEVLYSIARDFIGDYNDKVVFD 315 Query: 216 LYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275 LY G G+ V+A +V +EI + +V AA N N + N + + + + ++ Sbjct: 316 LYSGTGSIGQVMAGAAKKVYGIEIVEEAVVAANENAKLNGLTNCEFIAGDVAKVVKDLK- 374 Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLS 333 + I VDPPR G+ + + + I+YISCNP SL DL Sbjct: 375 --------------DKPDLIIVDPPRPGIHKDAIRDICGFGAKEIVYISCNPKSLVVDLV 420 Query: 334 ILST-THTIERLALFDQFPYTRHMECGVLLVRKPS 367 + I+ + D FP T H+EC L+ R S Sbjct: 421 DFKGYGYEIKMVKCMDMFPNTPHVECIALIQRVKS 455 >gi|300864706|ref|ZP_07109561.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Oscillatoria sp. PCC 6506] gi|300337289|emb|CBN54709.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Oscillatoria sp. PCC 6506] Length = 465 Score = 247 bits (631), Expect = 2e-63, Method: Composition-based stats. Identities = 72/380 (18%), Positives = 139/380 (36%), Gaps = 47/380 (12%) Query: 13 QLAEKVDRLRQMMLAFQ----VPNLQIFRSEPI---HYRMRAEFHIWHDG-DDLYHIMFD 64 QL K + + Q + P + + YR +A + + + + Sbjct: 105 QLEAKQNIVIQALQRIGGFTAPPVDPVLTGPDLTALGYRNKATYPLATSSTGQVQAGYYQ 164 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-----------LRAKLFQIDYLTSQ 113 + + + ++ +N L+ ++ I+ LR +I T + Sbjct: 165 KGSHRLINLNQCPVQDEDLNPLLKDIKKDIQQRGWKTYDEKQQTGELRHLSVRIGRRTGE 224 Query: 114 SDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDE 169 ++ L W + +L + + +T+ + Y+ E Sbjct: 225 ILLTLIVRSGDLSGIEAQASEWLKRYPQLVGVCLNINPRNTNVIFGPETRCIAGKPYLLE 284 Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFSLVLA 228 + L ++ ++F Q N+ +L+ + ++L + YCG G F+L LA Sbjct: 285 IFS----GLEFQIRADTFFQVNSEAAETLLQVIADELHLEGNEVLVDAYCGIGTFTLPLA 340 Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288 + + + +E+ +V+ A+ N NH+ NV + + + Sbjct: 341 KFVSKAIGLELQGAAVKQAQLNAELNHLTNVAFYVGAVENLLPQL--------------- 385 Query: 289 SYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILS--TTHTIERL 344 + +DPPR G D + + A I YISC P +L RDL L + ++R+ Sbjct: 386 DVTPDVVLLDPPRKGCDRTVLETLVATQPSRIAYISCKPSTLARDLKFLCQNGGYKLQRV 445 Query: 345 ALFDQFPYTRHMECGVLLVR 364 D FP T H+EC LVR Sbjct: 446 QPADFFPQTPHVECAAFLVR 465 >gi|260685752|ref|YP_003216885.1| putative tRNA (Uracil-5-)-methyltransferase [Clostridium difficile R20291] gi|260211768|emb|CBE02120.1| putative tRNA (Uracil-5-)-methyltransferase [Clostridium difficile R20291] Length = 453 Score = 247 bits (631), Expect = 2e-63, Method: Composition-based stats. Identities = 81/393 (20%), Positives = 145/393 (36%), Gaps = 49/393 (12%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLA-----FQVPNLQIFRSEPIHYRMRAE--FHIWHD 54 TLL YE+QL K ++ + L FQ ++ E +YR + E F Sbjct: 81 GCTLLSVPYEKQLEIKEKQVMDLFLKQDLFGFQFLGIE-GSPENKYYRNKMEYTFGDEVK 139 Query: 55 GDDLYHIMFDQQTKERMR-IDYFMPGSLLI-----------NALMIEMMATIRLEPLLRA 102 L + + ++ ++ M N + T+ + LR Sbjct: 140 NGPLTLGLHKKGKHIDIQTVEECMLVDEDFSKILVSSVEFFNEKKLPYYRTMNHKGYLRH 199 Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAI------RLRDALHARKYQIQLIGRAN 156 + + T++ IVT + +++ + L LH + + + Sbjct: 200 LVVRKGIHTNEIMVNIVTSSQEDFDMNEFKDMLLGIDLKAELVGVLHTINDGLADAVQCD 259 Query: 157 KTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-E 215 + ++ RDY+ E + L ++ SF Q N + ++ + Sbjct: 260 ELRVLYGRDYIQEEIL----GLKFKISPFSFFQTNTKGAEVLYSIARDFIGDYNDKVVFD 315 Query: 216 LYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275 LY G G+ V+A +V +EI + +V AA N N + N + + + + ++ Sbjct: 316 LYSGTGSIGQVMAGAAKKVYGIEIVEEAVVAANENAKLNGLTNCEFIAGDVAKVVKDLK- 374 Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLS 333 + I VDPPR G+ + + + I+YISCNP SL DL Sbjct: 375 --------------DKPDLIIVDPPRPGIHKDAIRDICGFGAKEIVYISCNPKSLVVDLV 420 Query: 334 ILST-THTIERLALFDQFPYTRHMECGVLLVRK 365 + I+ + D FP T H E V L+R+ Sbjct: 421 DFKGYGYEIKMVKCMDMFPNTPHCETVVKLIRE 453 >gi|20808214|ref|NP_623385.1| SAM-dependent methyltransferase related to tRNA (uracil-5-)-methyltransferase [Thermoanaerobacter tengcongensis MB4] gi|254479579|ref|ZP_05092891.1| 23S rRNA (uracil-5-)-methyltransferase [Carboxydibrachium pacificum DSM 12653] gi|50401615|sp|Q8R933|Y1797_THETN RecName: Full=Uncharacterized RNA methyltransferase TTE1797 gi|20516809|gb|AAM24989.1| SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Thermoanaerobacter tengcongensis MB4] gi|214034482|gb|EEB75244.1| 23S rRNA (uracil-5-)-methyltransferase [Carboxydibrachium pacificum DSM 12653] Length = 450 Score = 247 bits (631), Expect = 2e-63, Method: Composition-based stats. Identities = 78/390 (20%), Positives = 145/390 (37%), Gaps = 46/390 (11%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIF----RSEPIHYRMRAEFHIWHDGDD 57 T YE QL K D + +++ + + + + YR + E+ D + Sbjct: 79 GCTYQNLSYENQLKIKKDVVLKLLEKEGIKDFEFLGIERSPKVYGYRNKMEYTFGTDREG 138 Query: 58 LYHIMFDQQTK--ERMRIDYFMPGSLLINAL-----------MIEMMATIRLEPLLRAKL 104 + ++ K + + D + E LR + Sbjct: 139 KKALGLHRKGKFYDVVMTDKCNIVDEDFTKALSLTFNYALEKNLPFYDKKTHEGYLRYLV 198 Query: 105 FQIDYLTSQSDQAIVTLIYHRLLDDAWRE------CAIRLRDALHARKYQIQLIGRANKT 158 + + IVT + D E + L LH K Sbjct: 199 VRKASKNGELLINIVTTTQLKHKFDDLVELYRSANFSSTLVGVLHTYNDSWSDAVICEKL 258 Query: 159 KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELY 217 ++ RDY+ E L L ++ SF Q N+ + V + + +LY Sbjct: 259 EVLYGRDYLIEELL----GLKFKISAFSFFQTNSYGAERIYSTVREFAGDVSNKTIFDLY 314 Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277 CG G +V+A +V+ +E+ + +V +A+ N A N + N + ++ +R + Sbjct: 315 CGTGTIGIVMAPLARKVIGIELVEEAVFSAKENAALNGLENAVFIAGD---VSKKLREIK 371 Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSIL 335 E + + VDPPRSG++ + + + I+Y+SCNP+S RDL + Sbjct: 372 E------------KPDIVVVDPPRSGVNPKALEDIVNFEPEKIIYVSCNPESFARDLRLF 419 Query: 336 -STTHTIERLALFDQFPYTRHMECGVLLVR 364 + ++++ D FP+T H+E LL + Sbjct: 420 VDKGYAVKKVKAIDMFPHTYHVELVGLLEK 449 >gi|313888449|ref|ZP_07822116.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Peptoniphilus harei ACS-146-V-Sch2b] gi|312845478|gb|EFR32872.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Peptoniphilus harei ACS-146-V-Sch2b] Length = 542 Score = 247 bits (631), Expect = 2e-63, Method: Composition-based stats. Identities = 82/380 (21%), Positives = 157/380 (41%), Gaps = 37/380 (9%) Query: 3 GTLLIDQY--EQQLAEKVDRLRQMMLAFQVPNLQIFR----SEPIHYRMRAEFHIWHDGD 56 G Y +++L K + + + +L++ + HYR +F + Sbjct: 77 GGCDFLNYSDDKELKWKEADVNKNLNKLAGLDLEVEEVIDSPDKTHYRNNMQFQV----S 132 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116 D +F + +KE + I + N ++ M +L+ L +I T+ Sbjct: 133 DGKIGLFAKNSKEIVSIKTCIMQKDSANQVLKIMWNYKKLKD-----LKRIGIRTNYKGD 187 Query: 117 AIVTLIYHR---LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTV 173 ++ L+ R + D + +++ + + + + D ++ERL Sbjct: 188 ILLILVSKRGRLEIKDVLSDLIDAGVKSIYLNYNKEDKTHYSREFEKIYGDDTIEERLL- 246 Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFD 232 + Y+ SF Q N + + + + D + +LYCG G+ SL +A+ Sbjct: 247 ---GINYKISPESFFQINGPATEKLYKKAIDYLEPKDDDKIYDLYCGVGSISLSVAKSGP 303 Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292 V+ +EI + +V+ AR N N++ + V ++E + + E Sbjct: 304 EVIGIEIVESAVDDARENAEKNNIK-ARFVHGPAEETIEKLWEE-----------EKIAP 351 Query: 293 KTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILSTTHTIERLALFDQF 350 I VDPPR GLD+ V ++ P ++YISCNP + RDL L + +E++++ + F Sbjct: 352 NKIIVDPPRKGLDEKLVNFLKENPVERLVYISCNPATQARDLKSLKEVYKVEKISVVNLF 411 Query: 351 PYTRHMECGVLLVRKPSGWH 370 P T H E LL + + H Sbjct: 412 PNTAHCETVALLSKLNTEHH 431 >gi|328887534|emb|CAJ67227.2| putative tRNA (Uracil-5-)-methyltransferase [Clostridium difficile] Length = 453 Score = 247 bits (631), Expect = 2e-63, Method: Composition-based stats. Identities = 82/395 (20%), Positives = 146/395 (36%), Gaps = 49/395 (12%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLA-----FQVPNLQIFRSEPIHYRMRAE--FHIWHD 54 TLL YE+QL K ++ + L FQ ++ E +YR + E F Sbjct: 79 GCTLLSVPYEKQLEIKEKQVMDLFLKQDLFGFQFLGIE-GSPENKYYRNKMEYTFGDEVK 137 Query: 55 GDDLYHIMFDQQTKERMR-IDYFMPGSLLI-----------NALMIEMMATIRLEPLLRA 102 L + + ++ ++ M N + T+ + LR Sbjct: 138 NGPLTLGLHKKGKHIDIQTVEECMLVDEDFSKILVSSVEFFNEKKLPYYRTMNHKGYLRH 197 Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAI------RLRDALHARKYQIQLIGRAN 156 + + T++ IVT + +++ + L LH + + + Sbjct: 198 LVVRKGIHTNEIMVNIVTSSQEDFDMNEFKDMLLGIDLKAELVGVLHTINDGLADAVQCD 257 Query: 157 KTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-E 215 + ++ RDY+ E + L ++ SF Q N + ++ + Sbjct: 258 ELRVLYGRDYIQEEIL----GLKFKISPFSFFQTNTKGAEVLYSIARDFIGDYNDKVVFD 313 Query: 216 LYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275 LY G G+ V+A +V +EI + +V AA N N + N + + + + ++ Sbjct: 314 LYSGTGSIGQVMAGAAKKVYGIEIVEEAVVAANENAKLNGLTNCEFIAGDVAKVVKDLK- 372 Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLS 333 + I VDPPR G+ + + + I+YISCNP SL DL Sbjct: 373 --------------DKPDLIIVDPPRPGIHKDAIRDICGFGAKEIVYISCNPKSLVVDLV 418 Query: 334 ILST-THTIERLALFDQFPYTRHMECGVLLVRKPS 367 + I+ + D FP T H+EC L+ R S Sbjct: 419 DFKGYGYEIKMVKCMDMFPNTPHVECIALIQRVKS 453 >gi|153814681|ref|ZP_01967349.1| hypothetical protein RUMTOR_00896 [Ruminococcus torques ATCC 27756] gi|145848175|gb|EDK25093.1| hypothetical protein RUMTOR_00896 [Ruminococcus torques ATCC 27756] Length = 458 Score = 247 bits (631), Expect = 2e-63, Method: Composition-based stats. Identities = 87/394 (22%), Positives = 155/394 (39%), Gaps = 48/394 (12%) Query: 2 SGTLL-IDQYEQQLAEKVDRLRQMMLAFQVPN--LQIFRSEP--IHYRMRAEFHI---WH 53 G + YE+Q+ K ++R++M + ++ P YR + EF + Sbjct: 84 GGCMYQTMPYEEQMKMKEGQIRRIMDEAVDGEYLFEGVKASPKEFAYRNKMEFSFGDEYK 143 Query: 54 DGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEP-----------LLRA 102 DG + T + + +N +++ ++ + LR Sbjct: 144 DGPLSLGLHKKGSTYDVLTASDCKLVHEDMNKILVCVLEYFKERKVSYYKKMQHVGYLRH 203 Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRL------RDALHARKYQIQLIGRAN 156 L + T + +VT E ++L LH + + +++ Sbjct: 204 LLLRRGDTTGEILVNLVTTTQEEYDLSELTEQLLQLPLEGKIVGILHILNDSLSDVVKSD 263 Query: 157 KTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG-DLLE 215 +T++ +D+ E+L L ++ SF QPN + E V I + + Sbjct: 264 ETRVLYGQDFFYEKLL----GLQFKITPFSFFQPNTKGAEVLYETVREYIGDIHDLTVFD 319 Query: 216 LYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275 L+ G G S LA +V+ VEI + +VEAA+ N N ++N + + E ++ Sbjct: 320 LFSGTGTISQALAPVAKKVIGVEIVEEAVEAAKENAERNGLSNCEFIAGDVFEVLDDIKE 379 Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLS 333 + I +DPPR G+ + + I+YISC SL RDL Sbjct: 380 ---------------KPDVIILDPPRDGIHPKALPKILDYGVDRIVYISCKMTSLARDLE 424 Query: 334 ILST-THTIERLALFDQFPYTRHMECGVLLVRKP 366 ++ +T+E++ DQF T H+E VLL RKP Sbjct: 425 LIQQRGYTVEKMTAVDQFCETVHVETAVLLTRKP 458 >gi|148358986|ref|YP_001250193.1| 23S rRNA (uracil-5-)methyltransferase RumA [Legionella pneumophila str. Corby] gi|296107035|ref|YP_003618735.1| 23S rRNA (uracil-5-)methyltransferase RumA [Legionella pneumophila 2300/99 Alcoy] gi|189045733|sp|A5IBU7|RUMA_LEGPC RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|148280759|gb|ABQ54847.1| 23S rRNA (uracil-5-)methyltransferase RumA [Legionella pneumophila str. Corby] gi|295648936|gb|ADG24783.1| 23S rRNA (uracil-5-)methyltransferase RumA [Legionella pneumophila 2300/99 Alcoy] Length = 444 Score = 247 bits (631), Expect = 2e-63, Method: Composition-based stats. Identities = 84/378 (22%), Positives = 151/378 (39%), Gaps = 34/378 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSE----PIHYRMRAEFHIWHDGDD 57 +L E+Q+ K L ++ + Q S +YR +A Sbjct: 85 GCSLQHMSAEEQIRFKQSHLLDLLSRYGHTEPQSVLSPLTSHHWNYRNKARLSTRFVEKK 144 Query: 58 LYHIMFDQQTKER---MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQS 114 ++ ++ I+ + I+ ++ + I + + QI+ + Sbjct: 145 QSTMVGFRERNNPRFITEINQCPILNSKIDTDIVHLRKLIDTMED-KHCIAQIEVAAGDN 203 Query: 115 DQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD----RDYVDER 170 + A++ R L + +++R+ +Y++ L + C Y+ Sbjct: 204 EVALI----FRNLSPLTEQDELKIREFAQQFQYKVFLQPGGLDSVFCFYPSDAHAYLSYE 259 Query: 171 LTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLAR 229 L T + N FTQ NA +N M+ + + D +L+L+CG GNFSL +A+ Sbjct: 260 LPDYQITFQFH--PNDFTQVNAELNRKMVTQAIQLMELKNSDIVLDLFCGLGNFSLPMAK 317 Query: 230 HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHS 289 H RV+ VE K VE A N +NH+ NV + + + ++ + Sbjct: 318 HCSRVIGVEGNKNMVERAYMNAKSNHITNVDFYAANLDDVMEV------------RNLVN 365 Query: 290 YRFKTIFVDPPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDLSIL--STTHTIERLAL 346 F + +DPPRSG + + P I+Y+SCNP +L RD IL + + + Sbjct: 366 TSFSKVLIDPPRSGALEIVKQIDSIDPERIVYVSCNPITLARDTDILVNQKGYVLITAGV 425 Query: 347 FDQFPYTRHMECGVLLVR 364 D FP+T H+E L + Sbjct: 426 MDMFPHTAHVESIALFQK 443 >gi|284042250|ref|YP_003392590.1| RNA methyltransferase, TrmA family [Conexibacter woesei DSM 14684] gi|283946471|gb|ADB49215.1| RNA methyltransferase, TrmA family [Conexibacter woesei DSM 14684] Length = 456 Score = 247 bits (631), Expect = 2e-63, Method: Composition-based stats. Identities = 81/383 (21%), Positives = 143/383 (37%), Gaps = 43/383 (11%) Query: 7 IDQYEQQLAEKVDRLRQMMLAFQVP-----NLQIFRSEPIHYRMRAEFHIWHDG----DD 57 I YE+QL K ++ + + E YR + E+ +G + Sbjct: 91 ILPYERQLEIKSKQVDDALRRIGKLGGFELEPIVPALETWRYRNKLEYSFGTEGTAERGE 150 Query: 58 LYHIMFDQQTKERM-RIDYFMPGSLLINALMIEMMATIRLEPL-----------LRAKLF 105 L +R+ I M S NA+ +++A R + L LR + Sbjct: 151 LIFGFHAPGEWDRIVPIADCMLASERGNAVRDQVLAFCREQGLTAYDRRTRRGFLRNCVI 210 Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD 165 + T Q +VT+ LD A+ L + + T++ D Sbjct: 211 REGRRTGQFQVRLVTMPGE--LDREAFAEAVDCDGLLWTQFDGLGETTAEGDTELIAGSD 268 Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNFS 224 Y++E L + +R N+F Q N + + A+ L +LYCG G Sbjct: 269 YLEEEL----NGMSFRVSPNAFFQVNTEMAEKLYALAGDYASLAGFERLYDLYCGIGTVG 324 Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284 L +A + +EI + ++ A N N ++N + + + + Sbjct: 325 LTMAPRAGELWGLEIIEDAIGDAIANARLNEIDNARFFAGDVRTALRLLVD--------- 375 Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST-THTI 341 + + VDPPR+GL V + + ++YISCNP +L + + L+ + + Sbjct: 376 ---TAGSPDVVVVDPPRAGLSRKVVRRIIDASPKRLVYISCNPTTLAPNGAQLAEAGYVL 432 Query: 342 ERLALFDQFPYTRHMECGVLLVR 364 ++ D FP T H+EC L R Sbjct: 433 RKVRPVDMFPQTPHIECVALFER 455 >gi|254974048|ref|ZP_05270520.1| putative tRNA (Uracil-5-)-methyltransferase [Clostridium difficile QCD-66c26] gi|255091449|ref|ZP_05320927.1| putative tRNA (Uracil-5-)-methyltransferase [Clostridium difficile CIP 107932] gi|255313180|ref|ZP_05354763.1| putative tRNA (Uracil-5-)-methyltransferase [Clostridium difficile QCD-76w55] gi|255515867|ref|ZP_05383543.1| putative tRNA (Uracil-5-)-methyltransferase [Clostridium difficile QCD-97b34] gi|255648960|ref|ZP_05395862.1| putative tRNA (Uracil-5-)-methyltransferase [Clostridium difficile QCD-37x79] gi|306519078|ref|ZP_07405425.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium difficile QCD-32g58] Length = 451 Score = 247 bits (631), Expect = 2e-63, Method: Composition-based stats. Identities = 81/393 (20%), Positives = 145/393 (36%), Gaps = 49/393 (12%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLA-----FQVPNLQIFRSEPIHYRMRAE--FHIWHD 54 TLL YE+QL K ++ + L FQ ++ E +YR + E F Sbjct: 79 GCTLLSVPYEKQLEIKEKQVMDLFLKQDLFGFQFLGIE-GSPENKYYRNKMEYTFGDEVK 137 Query: 55 GDDLYHIMFDQQTKERMR-IDYFMPGSLLI-----------NALMIEMMATIRLEPLLRA 102 L + + ++ ++ M N + T+ + LR Sbjct: 138 NGPLTLGLHKKGKHIDIQTVEECMLVDEDFSKILVSSVEFFNEKKLPYYRTMNHKGYLRH 197 Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAI------RLRDALHARKYQIQLIGRAN 156 + + T++ IVT + +++ + L LH + + + Sbjct: 198 LVVRKGIHTNEIMVNIVTSSQEDFDMNEFKDMLLGIDLKAELVGVLHTINDGLADAVQCD 257 Query: 157 KTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-E 215 + ++ RDY+ E + L ++ SF Q N + ++ + Sbjct: 258 ELRVLYGRDYIQEEIL----GLKFKISPFSFFQTNTKGAEVLYSIARDFIGDYNDKVVFD 313 Query: 216 LYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275 LY G G+ V+A +V +EI + +V AA N N + N + + + + ++ Sbjct: 314 LYSGTGSIGQVMAGAAKKVYGIEIVEEAVVAANENAKLNGLTNCEFIAGDVAKVVKDLK- 372 Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLS 333 + I VDPPR G+ + + + I+YISCNP SL DL Sbjct: 373 --------------DKPDLIIVDPPRPGIHKDAIRDICGFGAKEIVYISCNPKSLVVDLV 418 Query: 334 ILST-THTIERLALFDQFPYTRHMECGVLLVRK 365 + I+ + D FP T H E V L+R+ Sbjct: 419 DFKGYGYEIKMVKCMDMFPNTPHCETVVKLIRE 451 >gi|313674919|ref|YP_004052915.1| 23S rRNA m(5)u-1939 methyltransferase [Marivirga tractuosa DSM 4126] gi|312941617|gb|ADR20807.1| 23S rRNA m(5)U-1939 methyltransferase [Marivirga tractuosa DSM 4126] Length = 466 Score = 247 bits (631), Expect = 2e-63, Method: Composition-based stats. Identities = 72/401 (17%), Positives = 145/401 (36%), Gaps = 53/401 (13%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-----IFRSEPIHYRMRAEFHIWHDG- 55 Y+ QL K ++++ + +L + YR + E+ ++ Sbjct: 82 GCKWQHLSYDDQLGFKSEQVKDALERIAKVDLPEIKAILGSKNTTFYRNKMEYTFSNNRW 141 Query: 56 -------------DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLL-- 100 D ++ + ++I+ + NA+ + + + Sbjct: 142 LTTEEIESGKEFESDALGFHIPKRFDKIVQIEKCYLQADPSNAIRNSVDRFAKDNNITYF 201 Query: 101 -----RAKLFQIDYLTSQSDQAIVTL-------IYHRLLDDAWRECAIRLRDALHARKYQ 148 L + TS + Q +V L + ++ + +E L L+ + Sbjct: 202 NLIKQVGFLRNLIIRTSSTGQTMVILQVAEDNEEWLSMMLNHIKENFPELTSLLYILNQK 261 Query: 149 IQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKG 208 + +D++ E + L ++ SF Q N+ L V Sbjct: 262 GNETFHDLDVNVFYGKDHIIEEM----EGLQFKIGPKSFYQTNSDQAYE-LYKVARDFAN 316 Query: 209 IQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266 ++G+ + +LY G G + LA+ +V+ VE ++E A+ N N + N + Sbjct: 317 LKGEETVYDLYTGTGTIANFLAKSAKKVIGVEYVTEAIEDAKVNSKLNEIENTEFFSGDM 376 Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCN 324 K+ + + + I DPPR+G+ + + I+Y+SCN Sbjct: 377 KDVFND-----------EFLVEHGKADVIITDPPRAGMHPDVIKTLLNIGAEKIVYVSCN 425 Query: 325 PDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 P + RDL++L + + ++ D FP T H+E VLL K Sbjct: 426 PATQARDLALLDEKYKVTKVQPVDMFPQTHHVENVVLLELK 466 >gi|116495254|ref|YP_806988.1| tRNA (uracil-5-)-methyltransferase related enzyme [Lactobacillus casei ATCC 334] gi|116105404|gb|ABJ70546.1| 23S rRNA m(5)U-1939 methyltransferase [Lactobacillus casei ATCC 334] Length = 455 Score = 247 bits (631), Expect = 2e-63, Method: Composition-based stats. Identities = 73/383 (19%), Positives = 137/383 (35%), Gaps = 47/383 (12%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPN-------LQIFRSEPIHYRMRAEFHIWHDGDDLYHIM 62 Y QL K D + Q + F+ I ++P HYR +A+F + + + Sbjct: 91 YPAQLRFKRDVVAQSLAKFKPTGWTHYDLRPTIGMAQPTHYRNKAQFPVRVIDGHVRAGL 150 Query: 63 FDQQTKERMRIDYFMPG-----------SLLINALMIEMMATIRLEPLLRAKLFQIDYLT 111 + + + + F+ ++ L I + + +++ + + + T Sbjct: 151 YAPNSHHLIPLTKFLTQAPLTMKVVTTLCQILEQLQIPIYNEKKRSGIVKTLVVRESFAT 210 Query: 112 SQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIG-------RANKTKICLDR 164 + VT I + E + L Q I ++++ Sbjct: 211 K---EVQVTFITNSPKLPHEGELLNGIATQLPMVVSIAQNINPGETSLIWGKESRLLAGL 267 Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELYCGNGNF 223 Y+ E L ++ +F Q N + A G L++ YCG G Sbjct: 268 PYIQETLL----GRTFQLSPQAFLQLNPKQTETLYTLAAKALDLGPHDTLIDAYCGIGTV 323 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 + LA+ + ++ + A+ N AN + N +++ +E Sbjct: 324 GISLAKGNQPIYGMDTIAEGIADAKANAKANGLTNAHYSVGKAEDIFPKWVQE------- 376 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILSTTHTI 341 + + VDPPR+GL+ A + + P +YISCNP +L RDL L+ + + Sbjct: 377 -----GMKPDAVIVDPPRAGLERAFIDALLELDPPKFVYISCNPSTLARDLVFLTKRYKV 431 Query: 342 ERLALFDQFPYTRHMECGVLLVR 364 + + D FP T E V R Sbjct: 432 DWIQSIDMFPQTARCEAVVKFTR 454 >gi|54297367|ref|YP_123736.1| 23S rRNA 5-methyluridine methyltransferase [Legionella pneumophila str. Paris] gi|59800221|sp|Q5X5A8|RUMA_LEGPA RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|53751152|emb|CAH12563.1| hypothetical protein lpp1412 [Legionella pneumophila str. Paris] Length = 444 Score = 247 bits (630), Expect = 2e-63, Method: Composition-based stats. Identities = 84/378 (22%), Positives = 150/378 (39%), Gaps = 34/378 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSE----PIHYRMRAEFHIWHDGDD 57 +L E+Q+ K L ++ + Q S +YR +A Sbjct: 85 GCSLQHMSAEEQIRFKQSHLLDLLSRYGHTEPQSVLSPLTSHHWNYRNKARLSTRFVEKK 144 Query: 58 LYHIMFDQQTKER---MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQS 114 ++ ++ I+ + I+ ++ + I + + QI+ + Sbjct: 145 QSTMVGFRERNNPRFITEINQCPILNSKIDTDIVHLRKLIDTMED-KHCIAQIEVAAGDN 203 Query: 115 DQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD----RDYVDER 170 + A++ R L + +++R+ +Y++ L + C Y+ Sbjct: 204 EVALI----FRNLSPLTEQDELKIREFAQQFQYKVFLQPGGLDSVFCFYPSDAHAYLSYE 259 Query: 171 LTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLAR 229 L T + N FTQ NA +N M+ + + D +L+L+CG GNFSL +A+ Sbjct: 260 LPDYQITFQFH--PNDFTQVNAELNRKMVTQAIQLMELKNSDIVLDLFCGLGNFSLPMAK 317 Query: 230 HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHS 289 H RV+ VE K VE A N +NH+ NV + + + + + Sbjct: 318 HCSRVIGVEGNKNMVERAYMNAKSNHITNVDFYAANLDDVMEV------------RSLVN 365 Query: 290 YRFKTIFVDPPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDLSIL--STTHTIERLAL 346 F + +DPPRSG + + P I+Y+SCNP +L RD IL + + + Sbjct: 366 TSFSKVLIDPPRSGALEIVKQIDSIDPERIVYVSCNPITLARDTDILVNQKGYVLITAGV 425 Query: 347 FDQFPYTRHMECGVLLVR 364 D FP+T H+E L + Sbjct: 426 MDMFPHTAHVESIALFQK 443 >gi|222528478|ref|YP_002572360.1| TrmA family RNA methyltransferase [Caldicellulosiruptor bescii DSM 6725] gi|222455325|gb|ACM59587.1| RNA methyltransferase, TrmA family [Caldicellulosiruptor bescii DSM 6725] Length = 451 Score = 247 bits (630), Expect = 2e-63, Method: Composition-based stats. Identities = 73/385 (18%), Positives = 147/385 (38%), Gaps = 38/385 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWHDGDD 57 L+ +Y+ Q + K + +I P YR + + D Sbjct: 80 GCHLMHAKYQHQRSLKKLLVEDAFRRIGKLTPKINDVIGMENPFRYRNKTALPVGGDYKK 139 Query: 58 LYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLFQ 106 + + T + + IDY + LI IE+ + + +LR + + Sbjct: 140 PQIGFYKKMTHDIVDIDYCLIQHEFCDNVIKGMKDLIRKHKIEVYDEKKHKGVLRHIVVR 199 Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY 166 + D+ ++ L+ + + + + D + I + D Sbjct: 200 NSFA---FDEMMLILVCTK-VPENLEAIKKDILDRFPKIASFFVNLNPKRTNVILGEEDI 255 Query: 167 VDE---RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGN 222 + + L + SF Q N+ + V+ + I + + ++Y G G Sbjct: 256 LIWGSSTIKDKIGNLTFEISPKSFFQVNSMQTEVLYSQVVKYLRNIDAEIVFDVYSGIGT 315 Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282 S+ +A +V A+E+ + +VE A+ N N+++N++ + S++ + Sbjct: 316 ISMFIAPFCKKVYAIELVRDAVEDAKKNSKNNNISNIEFICGSAE------------IEI 363 Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILS-TTH 339 + + + +DPPRSG + + + P+I+Y+SCNP +L RD SIL + Sbjct: 364 PKLLKSGIVPQAVILDPPRSGCEKELLESLIEHKIPNIIYVSCNPSTLARDSSILCSNGY 423 Query: 340 TIERLALFDQFPYTRHMECGVLLVR 364 + + D FP T H+EC L + Sbjct: 424 EVVEVQPVDMFPQTFHVECVALFKK 448 >gi|260437263|ref|ZP_05791079.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Butyrivibrio crossotus DSM 2876] gi|292810573|gb|EFF69778.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Butyrivibrio crossotus DSM 2876] Length = 453 Score = 247 bits (630), Expect = 3e-63, Method: Composition-based stats. Identities = 89/400 (22%), Positives = 148/400 (37%), Gaps = 63/400 (15%) Query: 2 SGTLLID-QYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIW---- 52 G YE QLA K ++++++ + + YR + EF Sbjct: 79 GGCAYQSVSYENQLAIKEGQVKKLIDNVCS-DYEFLGITGSPVTTAYRNKMEFTFGDEFK 137 Query: 53 --------HDGDDLYHIMFDQQTKE---------RMRIDYFMPGSLLINALMIEMMATIR 95 H + Y I+ + ++ +DYF N + + Sbjct: 138 DGPLSLGLHKKNSFYDILTVTGCRNIDEDYSKILKITVDYF-------NEKKLPFYHKMT 190 Query: 96 LEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIR------LRDALHARKYQI 149 E LR L + Y T + I+T + E + L LH + Sbjct: 191 HEGYLRNLLVRKAYKTGEIIIDIITSTQIDFDLSEYVELLKKADYKGTLNGILHTVNDSL 250 Query: 150 QLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGI 209 TK+ +DY+ E L L ++ SF Q N+ + I Sbjct: 251 ADAVINEGTKVLYGKDYIYEELL----GLKFKITPFSFFQTNSLGAEVLYTKTREFVGEI 306 Query: 210 QGDLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268 ++ +LY G G + +LA +V+ VEI + +V AAR N N ++N + + Sbjct: 307 DNQVVFDLYSGTGTIAQILAPVAKKVVGVEIIEEAVVAARENARLNGLDNCEFIAGDV-- 364 Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPD 326 LK ID + I +DPPR G+ + + + I+Y+SC P Sbjct: 365 -------------LKVIDDIKDKPDMIVLDPPRDGIHPKAIDKIIDFGVNKIVYVSCKPT 411 Query: 327 SLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVRK 365 SL RD+ I + ++++ D FP T H+E VL+ RK Sbjct: 412 SLARDIEIFEARGYKVKKVCCVDMFPGTGHVETVVLMSRK 451 >gi|332071886|gb|EGI82374.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus pneumoniae GA17545] Length = 374 Score = 247 bits (630), Expect = 3e-63, Method: Composition-based stats. Identities = 77/380 (20%), Positives = 143/380 (37%), Gaps = 40/380 (10%) Query: 6 LIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHDGDDL 58 + Y++QL K D L Q + F + I EP +YR + +F + + Sbjct: 1 MHLHYDKQLEFKTDLLHQALKKFAPAGYENYEIRPTIGMQEPKYYRAKLQFQTRKFKNQV 60 Query: 59 YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----------LRAKLFQID 108 ++ Q + + + + + + + + +R + + Sbjct: 61 KAGLYAQNSHYLVELKDCLVQDKETQVIANRLAELLTYHQIPITDERKVLGVRTIMVRRA 120 Query: 109 YLTSQSDQAIVT---LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD 165 T Q IVT L +L+ + ++ + A++ + I KT+I ++ Sbjct: 121 RKTGQVQIIIVTNRQLNLTQLVKELVKDFPEVVTVAVNTNTAKTSEI-YGEKTEIIWGQE 179 Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGNGNFS 224 + E + + +F Q N + E V A + L++ YCG G Sbjct: 180 SIQEGVL----NYEFSLSPRAFYQLNPEQTEVLYSEAVKALDVDKEDHLIDAYCGVGTIG 235 Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284 A+ + ++I ++E A+ N +N +++E +E Sbjct: 236 FAFAKKVKTLRGMDIIPEAIEDAKRNAKRMGFDNTHYEAGTAEEIIPRWYKE-------- 287 Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTTHTIE 342 YR + VDPPR+GLDD + + Y ++YISCN +L RDL L + + Sbjct: 288 ----GYRADALIVDPPRTGLDDKLLDTILTYVPEKMVYISCNVSTLARDLVRLVEVYDLH 343 Query: 343 RLALFDQFPYTRHMECGVLL 362 + D FP+T E V L Sbjct: 344 YIQSVDMFPHTARTEAVVKL 363 >gi|193213715|ref|YP_001999668.1| RNA methyltransferase, TrmA family [Chlorobaculum parvum NCIB 8327] gi|193087192|gb|ACF12468.1| RNA methyltransferase, TrmA family [Chlorobaculum parvum NCIB 8327] Length = 479 Score = 247 bits (630), Expect = 3e-63, Method: Composition-based stats. Identities = 85/408 (20%), Positives = 155/408 (37%), Gaps = 61/408 (14%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMM---LAFQVPN--LQIFRSEPIHYRMRAEFHIWH--- 53 + YE QL K ++ + F+ P+ + + +HYR + EF + Sbjct: 88 GCKWMHVGYEAQLRYKHKKVTDSLVHIGGFENPDVLPVLAAPDALHYRNKVEFSCSNMRY 147 Query: 54 -----------DGDDLYHIMFDQQTK--ERMRIDYFMPGSLLINAL-----------MIE 89 + + F + + +D +N + + Sbjct: 148 LLQSEIDSDELSKPKTFALGFHAPGNFEKVLDLDTCYLAKECMNRVLNVVRDFALERGLA 207 Query: 90 MMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQI 149 A E LR + + + + DQ +V ++ + + RL A+ ++ + Sbjct: 208 PYAAKAHEGYLRNLMLR---YSERHDQLMVNIVTSWHDAELMQALKERLEVAMPEQQMTL 264 Query: 150 --------QLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEW 201 + + + YV ERL L +R NSF Q N + + Sbjct: 265 LNNVTTRKNTVATGEQEYVISGDGYVTERLG----DLDFRISANSFFQTNTRQAETLYDQ 320 Query: 202 VLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK 260 ++A D + +LYCG G +L LARH + + +E+ + +V A+ N N ++N Sbjct: 321 IIAVGSITPEDTVYDLYCGTGTITLYLARHCKQAIGIEVVESAVRDAQMNAELNGLSNTV 380 Query: 261 IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HI 318 + K F AM+ E + + I DPPR+G+ + M++ P I Sbjct: 381 FFQADLKNF-HAMQEALE---------PYAKPRIIVTDPPRAGMHPKALDTMLKLQPERI 430 Query: 319 LYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVRK 365 +Y+SCNPD+L RD ++ + + D FP T H+E R+ Sbjct: 431 VYVSCNPDNLARDGKEIAARGYRMTSAQPVDMFPQTNHIETVACFERE 478 >gi|325912172|ref|ZP_08174570.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners UPII 143-D] gi|325476122|gb|EGC79290.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners UPII 143-D] Length = 457 Score = 246 bits (629), Expect = 3e-63, Method: Composition-based stats. Identities = 74/386 (19%), Positives = 151/386 (39%), Gaps = 40/386 (10%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHDGDD 57 L Y+ QL K + ++ +L F N Q I + +YR +A++ I + + Sbjct: 88 LAHLDYDSQLLFKKELIKDSLLKFHPRNYQKIKIKNTIPAPKQWYYRNKAQYQIENIKNK 147 Query: 58 LYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLFQ 106 + M+ ++++ + + S LI + I + + + ++ + + Sbjct: 148 ISLGMYAPKSQKIIDLPIMPTQSKNTQKVEFAIKKLIEKMHIAIADSRYKKDGIKTVVVR 207 Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDAL---HARKYQIQLIGRANKTKICLD 163 + T + +VT+ + D E I L + + + NKT + Sbjct: 208 QSHATDEIQVTLVTIGKNIKNLDKLAEKIIELENVVSVFQNESQWNNPLVWGNKTTKLIG 267 Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGN 222 ++Y+ E++ + +F Q N + L + +L + Y G G Sbjct: 268 KNYITEQILNK----KFILSPRAFFQLNPEQTEVLYSTALNYLELNANSVLVDAYAGVGT 323 Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282 ++ + +V+ +E ++ A++N N+V N + + S ++ M+++ Sbjct: 324 LGILASEKVKQVIGIESIPEAIADAQFNCRLNNVKNAEYINGSVEKILPQMQKD------ 377 Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLSILSTTHT 340 + VDPPR+GL+ V + +YISCNP +L RDL +LS + Sbjct: 378 ------GIAIDALIVDPPRTGLNKQLVKTLLTCKPKDFVYISCNPSTLARDLVLLSQAYD 431 Query: 341 IERLALFDQFPYTRHMECGVLLVRKP 366 + + D P T E LV + Sbjct: 432 VRLIQPVDMMPQTPRWEGIAKLVLRK 457 >gi|302191196|ref|ZP_07267450.1| tRNA (uracil-5-)-methyltransferase related enzyme [Lactobacillus iners AB-1] Length = 457 Score = 246 bits (629), Expect = 3e-63, Method: Composition-based stats. Identities = 75/386 (19%), Positives = 150/386 (38%), Gaps = 40/386 (10%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHDGDD 57 L Y+ QL K + ++ +L F N Q I + +YR +A++ I + Sbjct: 88 LAHLDYDSQLLFKKELIKDSLLKFHPRNYQKIKVKNTIPAPKQWYYRNKAQYQIESIKNK 147 Query: 58 LYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLFQ 106 + M+ ++++ + + S LI + I + + + L+ + + Sbjct: 148 ISLGMYAPKSQKIIDLPIMPTQSKNTQKIEFAIKKLIEKMHIAIADSRYKKDGLKTVVVR 207 Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDAL---HARKYQIQLIGRANKTKICLD 163 + T + +VT+ + D E I L + + + NKT + Sbjct: 208 QSHATDEIQVTLVTIGKNIKNLDKLAEKIIELENVVSVFQNESQWNNPLVWGNKTTKLIG 267 Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGN 222 ++Y+ E++ + +F Q N + L + +L + Y G G Sbjct: 268 KNYITEQILNK----KFILSPRAFFQLNPEQTEVLYSTALNYLELNANSILVDAYAGVGT 323 Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282 ++ + +V+ +E ++ A++N N+V N + + S ++ M+++ Sbjct: 324 LGILASEKVKQVIGIESIPEAIADAQFNCRLNNVKNAEYINGSVEKILPQMQKD------ 377 Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLSILSTTHT 340 + VDPPR+GL+ V + +YISCNP +L RDL +LS + Sbjct: 378 ------GIAIDALIVDPPRTGLNKQLVKTLLTCKPKDFVYISCNPSTLARDLVLLSQAYD 431 Query: 341 IERLALFDQFPYTRHMECGVLLVRKP 366 + + D P T E LV + Sbjct: 432 VRLIQPVDMMPQTPRWEGIAKLVLRK 457 >gi|291514875|emb|CBK64085.1| 23S rRNA m(5)U-1939 methyltransferase [Alistipes shahii WAL 8301] Length = 469 Score = 246 bits (629), Expect = 3e-63, Method: Composition-based stats. Identities = 77/398 (19%), Positives = 140/398 (35%), Gaps = 60/398 (15%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPNLQ-----IFRSEPIHYRMRAEF----HIWHDGDDLY 59 Y +QL K D++R + L + +E YR + EF W +++ Sbjct: 91 PYGEQLRFKTDQVRDQLTRIGKIELPEIAPCLGSAETQFYRNKLEFTFADRRWLTREEIE 150 Query: 60 H---------------IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKL 104 MFD+ + I N + +E Sbjct: 151 SAGDIGDAPAVGFHIPGMFDK----VLDIRKCWLQPDPSNGIRMEAKRFCVENGYTFHNA 206 Query: 105 FQIDYL-------TSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGR--- 154 + L T+ + + +V ++++ L ++ Sbjct: 207 RSHEGLMRNMIVRTASTGEVMVIVVFNSDDRPRITALMDHLAAKFPEITSLFYIVNTKFN 266 Query: 155 ---ANKTKICL-DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ 210 + +C +D++ E + L ++ SF Q N+ + + Sbjct: 267 DSVGDLDPVCYRGKDHIIEEM----EELRFKVGPKSFYQTNSAQAYELYKVARDFADLRP 322 Query: 211 GDLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269 GD+L +LY G G + A RV+ VE ++ A+ N N + N K Sbjct: 323 GDVLYDLYTGTGTIANFCAARCARVVGVEYVPEAIADAKVNSELNGIENTVFYAGDMKAV 382 Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDS 327 + R I +DPPR+G+D+ + ++ A I+Y+SCNP + Sbjct: 383 LDD-----------GFVAANGRPDVIILDPPRAGVDEPVIEVILRAAPERIVYVSCNPAT 431 Query: 328 LCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 RDL ++ + +E + D FP+T H+E V LVR+ Sbjct: 432 QARDLQLMDAAYRVEAVQPVDMFPHTHHVENVVKLVRR 469 >gi|255099546|ref|ZP_05328523.1| putative tRNA (Uracil-5-)-methyltransferase [Clostridium difficile QCD-63q42] Length = 451 Score = 246 bits (629), Expect = 3e-63, Method: Composition-based stats. Identities = 81/393 (20%), Positives = 144/393 (36%), Gaps = 49/393 (12%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLA-----FQVPNLQIFRSEPIHYRMRAE--FHIWHD 54 TLL YE+QL K ++ + L FQ ++ E +YR + E F Sbjct: 79 GCTLLSVPYEKQLEIKEKQVMDLFLKQDLFGFQFLGIE-GSPENKYYRNKMEYTFGDEVK 137 Query: 55 GDDLYHIMFDQQTKERMR-IDYFMPGSLLI-----------NALMIEMMATIRLEPLLRA 102 L + + ++ ++ M N + T+ + LR Sbjct: 138 NGPLTLGLHKKGKHIDIQTVEECMLVDEDFSKILVSSVEFFNEKKLPYYRTMNHKGYLRH 197 Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAI------RLRDALHARKYQIQLIGRAN 156 + + T++ IVT +++ + L LH + + + Sbjct: 198 LVVRKGIHTNEIMVNIVTSSQEDFDMYEFKDMLLGIDLKSELVGVLHTINDGLADAVQCD 257 Query: 157 KTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-E 215 + ++ RDY+ E + L ++ SF Q N + ++ + Sbjct: 258 ELRVLYGRDYIQEEIL----GLKFKISPFSFFQTNTKGAEVLYSIARDFIGDYNDKVVFD 313 Query: 216 LYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275 LY G G+ V+A +V +EI + +V AA N N + N + + + + ++ Sbjct: 314 LYSGTGSIGQVMAGAAKKVYGIEIVEEAVVAANENAKLNGLTNCEFIAGDVAKVVKDLK- 372 Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLS 333 + I VDPPR G+ + + + I+YISCNP SL DL Sbjct: 373 --------------DKPDLIIVDPPRPGIHKDAIRDICGFGAKEIVYISCNPKSLVVDLV 418 Query: 334 ILST-THTIERLALFDQFPYTRHMECGVLLVRK 365 + I+ + D FP T H E V L+R+ Sbjct: 419 DFKGYGYEIKMVKCMDMFPNTPHCETVVKLIRE 451 >gi|269217160|ref|ZP_06161014.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Slackia exigua ATCC 700122] gi|269129297|gb|EEZ60382.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Slackia exigua ATCC 700122] Length = 376 Score = 246 bits (629), Expect = 3e-63, Method: Composition-based stats. Identities = 75/389 (19%), Positives = 143/389 (36%), Gaps = 51/389 (13%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPN--LQIFRSEPIHYRMRA--EFHIWHDGDDLYH---- 60 Y +QLA K + + ++ F + P+HYR + F +D Sbjct: 2 PYARQLARKREAVARLFAEFDGLEVAPVLGMDMPLHYRNKVVSPFVGVYDRKARRRRILC 61 Query: 61 IMFDQQTKERMRIDYFMP---GSLLINALMIEMMATIRLEPL--------LRAKLFQIDY 109 M+++ T + + + I + ++M +R+EP LR ++ + Sbjct: 62 GMYERGTHRVIDSSECLIENQVAKAIIQSVRQLMPKLRIEPYDEDADTGFLRHAQVRVGH 121 Query: 110 LTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD 165 + + +VT + L ++ + + + +K + Sbjct: 122 ASGEVMVTLVTRDEAFPAGKRLARELVRRHPQITTVVQNVNTRRTNVIMGDKERTIYGPG 181 Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNF 223 ++ + L L +R SF Q N+ + + G+ G+ +L+ YCG G Sbjct: 182 FILDELC----GLSFRISSRSFYQVNSEQTEVLYRTAVE-MAGLTGEETILDAYCGTGTI 236 Query: 224 SLVLARH------FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277 LV A+ ++ VE +V AR N N + + + + F + + E Sbjct: 237 GLVAAKGIDGKPGAKHLIGVEERMDAVADARTNARHNGIGSAEFFSDDAGAFMRRLAAE- 295 Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM--VQAYPHILYISCNPDSLCRDLSIL 335 +F+DPPR+G + + A I+Y+SCNP + RD L Sbjct: 296 -----------GGSVDAVFMDPPRAGATPDFLKAACLLAPRRIVYVSCNPATQLRDARYL 344 Query: 336 S-TTHTIERLALFDQFPYTRHMECGVLLV 363 + ++ L D FP+T H+E V Sbjct: 345 CDHGYRLDTLQPVDMFPHTEHVETIARFV 373 >gi|300814888|ref|ZP_07095119.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300510978|gb|EFK38247.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 428 Score = 246 bits (629), Expect = 3e-63, Method: Composition-based stats. Identities = 83/376 (22%), Positives = 161/376 (42%), Gaps = 35/376 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFR----SEPIHYRMRAEFHIWHDGDD 57 L +YE+ L K + + ++++ + + +YR +F + + Sbjct: 78 GCDFLNYKYEKSLDWKRQSVNNKLQRISELDIKVSKVNSSEKTFNYRNNMQFQV----KN 133 Query: 58 LYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQA 117 ++ + +KE + I+Y + S N + + L AK+ + T+ DQ Sbjct: 134 GKIGLYMKNSKEIVPIEYCLMQSTNANKTLKILTKFKNL-----AKIKTLGIRTNYKDQV 188 Query: 118 IVTLIYHRLLDDAWRECAIRLRDALHARKYQIQL---IGRANKTKICLDRDYVDERLTVA 174 ++ + ++ + + + I ++ + ++Y++E++ Sbjct: 189 MLIISSKEKINKLNLILGNLIDANVVSIYENINNRTNAHYGDEFNLLYGQEYLEEKI--- 245 Query: 175 GRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDR 233 L Y+ SF Q N ++ + + + + + +LY G G SL +A + Sbjct: 246 -NKLYYKLSPASFFQVNREQAENLYNKAMEFLQVKENEKIADLYSGVGTLSLEIASRKAQ 304 Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293 L VEI + ++E AR N N + + + S+E + ++++ + Sbjct: 305 TLGVEIVEEAIEDARINAQKNKLQ-ARFICGKSEEILEKIQKD-----------EKIKMD 352 Query: 294 TIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFP 351 I VDPPR G+D V + Y I+YISCNP +L RDL IL + +E++ +FD FP Sbjct: 353 KILVDPPRKGMDKKLVDYLNKNSYEKIVYISCNPATLARDLKILKEKYKVEKVEIFDLFP 412 Query: 352 YTRHMECGVLLVRKPS 367 YT H+EC L+ R S Sbjct: 413 YTSHVECIALIQRVKS 428 >gi|125625220|ref|YP_001033703.1| putative RNA methyltransferase [Lactococcus lactis subsp. cremoris MG1363] gi|124494028|emb|CAL99028.1| putative RNA methyltransferase [Lactococcus lactis subsp. cremoris MG1363] gi|300072030|gb|ADJ61430.1| putative RNA methyltransferase [Lactococcus lactis subsp. cremoris NZ9000] Length = 513 Score = 246 bits (629), Expect = 3e-63, Method: Composition-based stats. Identities = 74/405 (18%), Positives = 140/405 (34%), Gaps = 55/405 (13%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNL-------QIFRSEPIHYRMRAEFHIWH-DGD 56 ++ Y QL K D +RQ + ++ + + YR + +F + + Sbjct: 85 IMHLSYPMQLEFKRDVMRQALEKYKPAGWRNYELRATLGMENTLGYRNKLQFQVRRLNDG 144 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----------LRAKLFQ 106 + ++ + T + +D + I ++ + I L +R + + Sbjct: 145 TVIAGLYQEGTHHLVNLDNCLVQDPKIQEIINHICRLIEKFDLPVYDERKIGGIRTVMVR 204 Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWRECAI------------------RLRDALHARKYQ 148 T + VT L W E L + Sbjct: 205 RSQKTGEVQIIFVTSTPIILDGQVWPELREEASKRQKNSFVKFDKMLSALTEEFEEIVTV 264 Query: 149 IQLIGRANKTKICLDRDYV----DERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVL 203 ++I +R V E +T + +F Q N+ + E V Sbjct: 265 AVNFHPKKTSEIYGERTQVLFNEKETITEGVLDYEFELSPRAFYQLNSEQANVLYGEAVK 324 Query: 204 AATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVR 263 A +++ YCG G +A+ V ++I S+ AR N + N Sbjct: 325 ALNPKKDDRVIDAYCGVGTIGFAVAKKVKSVHGMDITPESIFDARENAKRLGLKNCHYEI 384 Query: 264 MSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYI 321 ++ + +R + VDPPR+GLDDA + + +P ++Y+ Sbjct: 385 GKAERIIPNWNK------------SGHRATAMIVDPPRTGLDDALLETITKFPPEKMVYV 432 Query: 322 SCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRKP 366 SCN +L +DL +L+ + +E + D FP+T E V L ++ Sbjct: 433 SCNVSTLAKDLVVLANYYKVEYIQSVDMFPHTARTEAVVKLTKRD 477 >gi|291537472|emb|CBL10584.1| 23S rRNA m(5)U-1939 methyltransferase [Roseburia intestinalis M50/1] Length = 473 Score = 246 bits (629), Expect = 3e-63, Method: Composition-based stats. Identities = 90/408 (22%), Positives = 150/408 (36%), Gaps = 62/408 (15%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN------LQIFRSE-PIHYRMRAEFHIW-- 52 T YE+Q+ K +++ ++ A L I S P YR + EF Sbjct: 81 GCTFQSLPYEEQIKMKEKQVKDLIDAVITEENKGYEFLPIKASPRPKAYRNKMEFSFGDE 140 Query: 53 HDGDDLYHIMFDQQTK-ERMRIDYFMPGSLLINAL-----------MIEMMATIRLEPLL 100 + L M + + + + + + I +R L Sbjct: 141 YKDGPLALGMHKRGSFYDIVNVGECQIVDEDFRRVLKITLEYFKEKQIPFYHKLRHTGYL 200 Query: 101 RAKLFQIDYLTSQSDQAIVTLIYHRLL----DDAWRECAIR----------LRDALHARK 146 R L + T + +VT L + A E ++ L+ LH + Sbjct: 201 RHFLVRKAAKTGEILVDLVTTTQMEELSGENESALLEGWVKKLCEEKYDGVLKGILHTKN 260 Query: 147 YQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAAT 206 + + T I +D+ E L L ++ SF Q N+ + + Sbjct: 261 DSVADTIKNEGTDILFGQDFFYEELL----GLKFKITPFSFFQTNSLGAEVLYQTAREFI 316 Query: 207 KGIQGD-----LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261 D + +LY G G + +L+ +V+ VEI + +V AAR N A N + N + Sbjct: 317 GDALDDEANQTVFDLYSGTGTIAQILSPVAKKVIGVEIVEEAVVAARENAALNGLTNCEF 376 Query: 262 VRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHIL 319 + LK ID + I +DPPR G+ + + Y P ++ Sbjct: 377 IAGDV---------------LKVIDTIGEKPDYIVLDPPRDGIHPKALEKIIRYNVPQMV 421 Query: 320 YISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVRKP 366 YISC P SL RDL +L + ++++ D FP T ++E VLL K Sbjct: 422 YISCKPTSLARDLEVLQARGYQVKKVQCVDMFPSTGNVETVVLLSHKN 469 >gi|167752279|ref|ZP_02424406.1| hypothetical protein ALIPUT_00523 [Alistipes putredinis DSM 17216] gi|167660520|gb|EDS04650.1| hypothetical protein ALIPUT_00523 [Alistipes putredinis DSM 17216] Length = 469 Score = 246 bits (629), Expect = 3e-63, Method: Composition-based stats. Identities = 80/398 (20%), Positives = 142/398 (35%), Gaps = 60/398 (15%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPNLQIFRS-----EPIHYRMRAEFHIWHDGDDLYH--- 60 Y +QL K +++R + L E YR + EF Y Sbjct: 91 PYAEQLRFKTEQVRDQLARIGKVELPEIAPCLPSAETRFYRNKLEFTFAERRWLTYEEIA 150 Query: 61 ----------------IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLL---- 100 MFD+ + I+ NA+ E Sbjct: 151 EKGEIADAPALGFHIPGMFDK----VLDIEKCWLQPDPSNAIREETRRFCLEHGYTFHNP 206 Query: 101 ---RAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGR--- 154 R + + T+ + + +V +++H + L A +I Sbjct: 207 REHRGLMRNMVVRTASTGEVMVIVVFHADEREKIAALLDHLAAAFPEITSLFYVINEKFN 266 Query: 155 ---ANKTKICL-DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ 210 + +C +D++ ER+ L ++ SF Q N+ + + Sbjct: 267 DSTGDLEPVCYRGKDHIIERM----EGLQFKVGPKSFYQTNSAQAYELYKVARDFAALTG 322 Query: 211 GDLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269 ++L +LY G G + A +V+ VE ++E AR N N + N K Sbjct: 323 KEILYDLYTGTGTIANFCAARCAKVVGVEYVPEAIEDARINSTLNGIGNTVFYAGDMKAV 382 Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDS 327 + + R I +DPPR+G+D+ + ++ A I+Y+SCNP + Sbjct: 383 LSD-----------EFIRRNGRPDVIILDPPRAGVDEPVIDVILRAAPERIVYVSCNPAT 431 Query: 328 LCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 RDL+++ + +E + D FP+T H+E V LVR+ Sbjct: 432 QARDLALMDGAYRVEAVQPVDMFPHTHHVENVVKLVRR 469 >gi|325912561|ref|ZP_08174944.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners UPII 60-B] gi|325477982|gb|EGC81111.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners UPII 60-B] Length = 457 Score = 246 bits (629), Expect = 3e-63, Method: Composition-based stats. Identities = 74/386 (19%), Positives = 150/386 (38%), Gaps = 40/386 (10%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHDGDD 57 L Y+ QL K + ++ +L F N Q I + +YR +A++ I + Sbjct: 88 LAHLDYDSQLLFKKELIKDSLLKFHPRNYQKIKVKNTIPAPKQWYYRNKAQYQIESIKNK 147 Query: 58 LYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLFQ 106 + M+ ++++ + + S LI + I + + + ++ + + Sbjct: 148 ISLGMYAPKSQKIIDLPIMPTQSKNTQKIEFAIKKLIEKMHIAIADSRYKKDGIKTVVVR 207 Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDAL---HARKYQIQLIGRANKTKICLD 163 + T + +VT+ + D E I L + + + NKT + Sbjct: 208 QSHATDEIQVTLVTIGKNIKNLDKLAEKIIELENVVSVFQNESQWNNPLVWGNKTTKLIG 267 Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGN 222 ++Y+ E++ + +F Q N + L + +L + Y G G Sbjct: 268 KNYITEQILNK----KFILSPRAFFQLNPEQTEVLYSTALNYLELNANSVLVDAYAGVGT 323 Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282 ++ + +V+ +E ++ A++N N+V N + + S ++ M+++ Sbjct: 324 LGILASEKVKQVIGIESIPEAIADAQFNCRLNNVKNAEYINGSVEKILPQMQKD------ 377 Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLSILSTTHT 340 + VDPPR+GL+ V + +YISCNP +L RDL +LS + Sbjct: 378 ------GIAIDALIVDPPRTGLNKQLVKTLLTCKPKDFVYISCNPSTLARDLVLLSQAYD 431 Query: 341 IERLALFDQFPYTRHMECGVLLVRKP 366 + + D P T E LV + Sbjct: 432 VRLIQPVDMMPQTPRWEGIAKLVLRK 457 >gi|269960399|ref|ZP_06174772.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269834826|gb|EEZ88912.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 436 Score = 246 bits (629), Expect = 3e-63, Method: Composition-based stats. Identities = 82/369 (22%), Positives = 156/369 (42%), Gaps = 32/369 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRS---EPIHYRMRAEFHIWHDGD-- 56 L Y+QQL K LRQ+M F ++++ E + YR RA ++ D Sbjct: 90 GCDLQHLNYDQQLTHKQQTLRQLMRKFAGSDIELDAPVLGESLGYRRRARVSLFVDKKTR 149 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116 L+ +Q+K+ ++ + +N L+ E+ +T++ +L ++ + + Sbjct: 150 QLHFGFRKKQSKQIAQVTDCPVLAPELNVLLPEIYSTLKAFKK-PEQLGHVELVLGDNGP 208 Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGR 176 I TL + L + + L A+++ L ++ D ++ + Sbjct: 209 CI-TLRHLSKLTEKETNSLLEL-----AKRHNASLYLMPETDQL----DLIEGEVPFYQE 258 Query: 177 -TLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRV 234 + N+F Q N +N M+ + + +L+L+CG GNFSL +A+ V Sbjct: 259 AGVTVPFTPNNFIQVNQAVNQKMVAQAVEWLDPQSDERVLDLFCGLGNFSLPIAKRAKHV 318 Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294 + VE VE A N + N +NN + + ++ + + +F Sbjct: 319 VGVEGVAEMVEKAANNASLNQINNAQFYHANLEQ------------DFEGQVWAAEQFDK 366 Query: 295 IFVDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPY 352 + +DP R+G + ++Y+SCNP +L RD S+L + + +L + D FP+ Sbjct: 367 VLLDPARAGASGIIDQVSALGAQRVVYVSCNPATLARDSQSLLEQGYQLTKLGMLDMFPH 426 Query: 353 TRHMECGVL 361 T H+E L Sbjct: 427 TSHLESMAL 435 >gi|239632134|ref|ZP_04675165.1| RNA methyltransferase [Lactobacillus paracasei subsp. paracasei 8700:2] gi|239526599|gb|EEQ65600.1| RNA methyltransferase [Lactobacillus paracasei subsp. paracasei 8700:2] Length = 455 Score = 246 bits (629), Expect = 3e-63, Method: Composition-based stats. Identities = 73/383 (19%), Positives = 139/383 (36%), Gaps = 47/383 (12%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPN-------LQIFRSEPIHYRMRAEFHIWHDGDDLYHIM 62 Y QL K D + Q + F+ I ++P HYR +A+F + + + Sbjct: 91 YPAQLRFKRDVVAQSLAKFKPTGWTHYDLRPTIGMAQPTHYRNKAQFPVRVIDGHVRAGL 150 Query: 63 FDQQTKERMRIDYFMPG-----------SLLINALMIEMMATIRLEPLLRAKLFQIDYLT 111 + + + + F+ ++ L I + + +++ + + + T Sbjct: 151 YAPNSHHLIPLTKFLTQAPLTMKVVTTLCQILEQLQIPIYNEKKRSGIVKTLVVRESFAT 210 Query: 112 SQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIG-------RANKTKICLDR 164 + VT I + E + L Q I ++++ Sbjct: 211 K---EVQVTFITNSPKLPHEGELLNAIATQLPMVVSIAQNINPGETSLIWGKESRLLAGL 267 Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELYCGNGNF 223 Y+ E L ++ +F Q N + A G+ L++ YCG G Sbjct: 268 PYIQETLL----GRTFQLSPQAFLQLNPKQTETLYTLAAKALDLGLHDTLIDAYCGIGTV 323 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 + LA+ + ++ + A+ N AN + N +++ +E Sbjct: 324 GISLAKGNQPIYGMDTIAEGIADAKANAKANGLTNAHYSVGKAEDIFPKWVQE------- 376 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILSTTHTI 341 + + VDPPR+GL+ A + + P +YISCNP +L RDL L+ + + Sbjct: 377 -----GMKPDAVIVDPPRAGLERAFIDALLELDPPKFVYISCNPSTLARDLVSLTKRYKV 431 Query: 342 ERLALFDQFPYTRHMECGVLLVR 364 + + D FP T E V +R Sbjct: 432 DWIQSIDMFPQTARCEAVVKFIR 454 >gi|312871819|ref|ZP_07731907.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners LEAF 3008A-a] gi|311092761|gb|EFQ51117.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners LEAF 3008A-a] Length = 457 Score = 246 bits (629), Expect = 4e-63, Method: Composition-based stats. Identities = 74/386 (19%), Positives = 150/386 (38%), Gaps = 40/386 (10%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHDGDD 57 L Y+ QL K + ++ +L F N Q I + +YR +A++ I + Sbjct: 88 LAHLDYDSQLLFKKELIKDSLLKFHPRNYQKIKVKNTIPAPKQWYYRNKAQYQIESIKNK 147 Query: 58 LYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLFQ 106 + M+ ++++ + + S LI + I + + + ++ + + Sbjct: 148 ISLGMYAPKSQKIIDLPIMPTQSKNTQKIEFTIKKLIEKMHIAIADSRYKKDGIKTVVVR 207 Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDAL---HARKYQIQLIGRANKTKICLD 163 + T + +VT+ + D E I L + + + NKT + Sbjct: 208 QSHATDEIQVTLVTIGKNIKNLDKLAEKIIELENVVSVFQNESQWNNPLVWGNKTTKLIG 267 Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGN 222 ++Y+ E++ + +F Q N + L + +L + Y G G Sbjct: 268 KNYITEQILNK----KFILSPRAFFQLNPEQTEVLYSTALNYLELNANSILVDAYAGVGT 323 Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282 ++ + +V+ +E ++ A++N N+V N + + S ++ M+++ Sbjct: 324 LGILASEKVKQVIGIESIPEAIADAQFNCRLNNVKNAEYINGSVEKILPQMQKD------ 377 Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLSILSTTHT 340 + VDPPR+GL+ V + +YISCNP +L RDL +LS + Sbjct: 378 ------GIAIDALIVDPPRTGLNKQLVKTLLTCKPKDFVYISCNPSTLARDLVLLSQAYD 431 Query: 341 IERLALFDQFPYTRHMECGVLLVRKP 366 + + D P T E LV + Sbjct: 432 VRLIQPVDMMPQTPRWEGIAKLVLRK 457 >gi|295397699|ref|ZP_06807772.1| 23S rRNA (uracil-5-)-methyltransferase [Aerococcus viridans ATCC 11563] gi|294974068|gb|EFG49822.1| 23S rRNA (uracil-5-)-methyltransferase [Aerococcus viridans ATCC 11563] Length = 469 Score = 246 bits (629), Expect = 4e-63, Method: Composition-based stats. Identities = 85/392 (21%), Positives = 152/392 (38%), Gaps = 44/392 (11%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMML----AFQVPNLQIFRSEPIHYRMRAEFHIWHDGDD 57 L +YE QL K + ++ + + I P YR + E DG Sbjct: 94 GAPLQFMKYEDQLTHKENLIKGYLAEAGFDTNLVKPIIGMDNPYRYRNKMELTFGVDGSL 153 Query: 58 LYHIMFDQQTKERMRIDYFMPGSLLINALMIEM-----------MATIRLEPLLRAKLFQ 106 H + + + + ++ + + A+ + + E LL L + Sbjct: 154 GMHQQGNYR--KVIDLEDSILAPEEMIAIKKVVSKWQKDYQFPGLDKDTKEGLLCNLLMR 211 Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTK------- 159 + T + AI L +A + RL +A L + Sbjct: 212 QSFATGEIMVAIYALEAPDAYTEAIEDLTQRLLNAQPRIVSFQWLKKNGGTERSYDNDVY 271 Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYC 218 + RDY+++ L + +R ++F Q N M+E + A +L+L+C Sbjct: 272 LIHGRDYINDEL----QGFKFRIWPDTFFQVNPVQANKMVETAIDMAQVKEDMKVLDLFC 327 Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278 G G FSL LA + +EI + S+ +A+ N A N+++N + ++ Sbjct: 328 GIGTFSLPLAAASKSLAGIEIVENSINSAKRNAADNNLDNTFFMASDAR---------AG 378 Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDL-SIL 335 L D+ + + +DPPR+G + + I+Y+SC P SL DL +L Sbjct: 379 LRVLPDVW---GQPDLLLLDPPRNGAGGKVMRAIGRFGTDRIVYVSCGPKSLAADLVWLL 435 Query: 336 STTHTIERLALFDQFPYTRHMECGVLLVRKPS 367 + + + DQFP+T H+E VLL +K + Sbjct: 436 DFGYEVVEVQPIDQFPHTAHLENIVLLKKKEA 467 >gi|259500506|ref|ZP_05743408.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners DSM 13335] gi|259167890|gb|EEW52385.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners DSM 13335] Length = 461 Score = 246 bits (628), Expect = 4e-63, Method: Composition-based stats. Identities = 75/386 (19%), Positives = 150/386 (38%), Gaps = 40/386 (10%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHDGDD 57 L Y+ QL K + ++ +L F N Q I + +YR +A++ I + Sbjct: 92 LAHLDYDSQLLFKKELIKDSLLKFHPRNYQKIKVKNTIPAPKQWYYRNKAQYQIESIKNK 151 Query: 58 LYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLFQ 106 + M+ ++++ + + S LI + I + + + L+ + + Sbjct: 152 ISLGMYAPKSQKIIDLPIMPTQSKNTQKIEFAIKKLIEKMHIAIADSRYKKDGLKTVVVR 211 Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDAL---HARKYQIQLIGRANKTKICLD 163 + T + +VT+ + D E I L + + + NKT + Sbjct: 212 QSHATDEIQVTLVTIGKNIKNLDKLAEKIIELENVVSVFQNESQWNNPLVWGNKTTKLIG 271 Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGN 222 ++Y+ E++ + +F Q N + L + +L + Y G G Sbjct: 272 KNYITEQILNK----KFILSPRAFFQLNPEQTEVLYSTALNYLELNANSILVDAYAGVGT 327 Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282 ++ + +V+ +E ++ A++N N+V N + + S ++ M+++ Sbjct: 328 LGILASEKVKQVIGIESIPEAIADAQFNCRLNNVKNAEYINGSVEKILPQMQKD------ 381 Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLSILSTTHT 340 + VDPPR+GL+ V + +YISCNP +L RDL +LS + Sbjct: 382 ------GIAIDALIVDPPRTGLNKQLVKTLLTCKPKDFVYISCNPSTLARDLVLLSQAYD 435 Query: 341 IERLALFDQFPYTRHMECGVLLVRKP 366 + + D P T E LV + Sbjct: 436 VRLIQPVDMMPQTPRWEGIAKLVLRK 461 >gi|313899252|ref|ZP_07832768.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium sp. HGF2] gi|312955932|gb|EFR37584.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium sp. HGF2] Length = 453 Score = 246 bits (628), Expect = 4e-63, Method: Composition-based stats. Identities = 86/388 (22%), Positives = 156/388 (40%), Gaps = 41/388 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWHDGDD 57 S LL + Q K ++ + + LQ + EP YR + D Sbjct: 80 SCQLLHMNAQGQRVFKNQSMQALCDRAKGMKLQTEDIVMMEEPWQYRNKVIIGFQKDRQR 139 Query: 58 LYHIMFDQQ-TKERMRIDYFM---PGSLLINALMIEMMATIRLEP--------LLRAKLF 105 F ++ + + I A ++E+M + +EP L+R + Sbjct: 140 RIQAGFYEEFSHRIIPYKCCPLHPEVCDSIIAGIVELMGKLHIEPYNEDQRKGLIRHVVV 199 Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD 165 + ++ Q ++ L+ + + A R LR +Q + KT + L + Sbjct: 200 RYGAVSK---QIMIVLVLNSNVFPARRNFIQELRKRFPQITTIVQNVNT-RKTSVVLGDE 255 Query: 166 ----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEW-VLAATKGIQGDLLELYCGN 220 Y + + +R SF Q N + + V + +L+ YCG Sbjct: 256 ERVLYGPGYIEDVLCGMTFRISAKSFYQINHEQTEVLYQRSVELLELSGKETVLDAYCGI 315 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G + ++R +V+ VEI + +VE A+ N N ++N++ V + + + E++ Sbjct: 316 GTIGMYVSRFVKQVIGVEINRDAVEDAKINAKINQISNIRFVCEDAGRYMTRLAAEKK-- 373 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCRDLSILST- 337 R + +DPPRSG + + +V+ P +LYISCNP + RDL + Sbjct: 374 ----------RLDVVIMDPPRSGSSEDFIKSLVRMKPKQVLYISCNPQTQIRDLQMFERM 423 Query: 338 THTIE-RLALFDQFPYTRHMECGVLLVR 364 + ++ +L D FP+T H+E V LVR Sbjct: 424 GYRVQGKLVPVDMFPHTVHVESIVKLVR 451 >gi|332884588|gb|EGK04845.1| hypothetical protein HMPREF9456_00598 [Dysgonomonas mossii DSM 22836] Length = 469 Score = 246 bits (628), Expect = 4e-63, Method: Composition-based stats. Identities = 73/395 (18%), Positives = 146/395 (36%), Gaps = 54/395 (13%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPNLQ-----IFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63 Y +QL K ++ + L + + YR + EF + + Sbjct: 91 PYAEQLKYKQKQVEDNLTRIGKIELPGIHHILGSEKTQFYRNKLEFTFSNKKWLTLEQIN 150 Query: 64 DQQT---------------KERMRIDYFMPGSLLINALMIEMMATIRLEPL----LRAK- 103 ++ + + ID + N + + + LR + Sbjct: 151 SGESFDNMNALGFHIPGMFDKVLDIDKCWLQEDISNQIRNFIRQYCYDKNYTFFDLRNRG 210 Query: 104 --LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRA-----N 156 + + TS + + +V ++++ D + + + ++ + Sbjct: 211 GLMRNLIVRTSTTGELMVIVVFYDDEKDQQQYLLTAVATEFPQITSLLYIVNQKANDTIT 270 Query: 157 KTKICL--DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-- 212 ++ + D + E + L ++ SF Q N+ + L + + GD Sbjct: 271 DQEVLVWKGNDCIYEEM----EGLKFKIGPKSFYQTNSEQAYN-LYKIARDFANLSGDEL 325 Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + +LY G G + +A +V+ +E + ++ AR N N ++N K+ Sbjct: 326 VYDLYTGTGTIANFVAGKAKKVIGIEYVEDAILDARVNSQINKIDNTLFYAGDMKDILT- 384 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCR 330 +D R I DPPR+G+ D + + I+Y+SCNP + R Sbjct: 385 ----------QDFINEHGRPDVIITDPPRAGMHDDVIKTILFAEPERIVYVSCNPATQAR 434 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 DLS+L + +E++ D FP+T H+E VLLV+K Sbjct: 435 DLSLLDEKYKVEKVQPVDMFPHTHHVENVVLLVKK 469 >gi|332710474|ref|ZP_08430421.1| 23S rRNA m(5)U-1939 methyltransferase [Lyngbya majuscula 3L] gi|332350805|gb|EGJ30398.1| 23S rRNA m(5)U-1939 methyltransferase [Lyngbya majuscula 3L] Length = 461 Score = 246 bits (628), Expect = 4e-63, Method: Composition-based stats. Identities = 79/378 (20%), Positives = 143/378 (37%), Gaps = 46/378 (12%) Query: 12 QQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDG-DDLYHIMFDQ 65 QQLA K +++ Q + + P+ YR +A + + + + + Sbjct: 103 QQLA-KQNQVIQALKRIGGFSEPTVAPILTTDSPLGYRNKATYPLKRSATGSVQAGYYQK 161 Query: 66 QTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKLFQIDYLTSQS 114 + + + ++ +N L+ E+ I+ + LR QI T + Sbjct: 162 GSHQLINLNQCPVQDQRLNPLLGEIKQDIQQLGWSIYNESRHQGRLRHLSLQIGQQTGEM 221 Query: 115 DQAIVTLIYHRLLDDAWRECAI----RLRDALHARKYQIQLIGRANKTKICLDRDYVDER 170 +VT + D + + +L + ++T + Y+ E Sbjct: 222 LLTLVTTDLNLKDLDIQGQTWLNRYPQLVGVCVNHNPHRSNVIFGSQTYCVAGQPYLRE- 280 Query: 171 LTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLAR 229 L R ++F Q N +L ++ + +++ YCG G F+L LA+ Sbjct: 281 ---NFAGLELRLRPDTFFQVNTEAAEVLLNLIIKQLALKGHECVVDAYCGIGTFTLPLAQ 337 Query: 230 HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHS 289 + + +E+ SVE A N N + NVK S + + + Sbjct: 338 QVSQAIGIEVQAASVEQAEQNALINGITNVKFQAGSVDQLLPQL---------------T 382 Query: 290 YRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILS--TTHTIERLA 345 I +DPPR G A + +++ A I+YISCNP +L RDL +L + + + Sbjct: 383 IAPDIILLDPPRKGCSPAVIDILRQVAPKRIVYISCNPATLARDLKLLCLNGDYQLTHIQ 442 Query: 346 LFDQFPYTRHMECGVLLV 363 D FP T H+EC L Sbjct: 443 PADFFPQTSHVECAAFLE 460 >gi|194335110|ref|YP_002016970.1| RNA methyltransferase, TrmA family [Prosthecochloris aestuarii DSM 271] gi|194312928|gb|ACF47323.1| RNA methyltransferase, TrmA family [Prosthecochloris aestuarii DSM 271] Length = 478 Score = 246 bits (628), Expect = 4e-63, Method: Composition-based stats. Identities = 83/404 (20%), Positives = 146/404 (36%), Gaps = 55/404 (13%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWH--- 53 + Y+ QL K ++ + + E HYR + EF Sbjct: 87 GCKWMHVSYDAQLHYKKKKVADALEHIGGMHDIAVQPVLPAPEAFHYRNKVEFSCSSKRY 146 Query: 54 -----------DGDDLYHIMFDQQTK--ERMRIDYFMPGSLLINAL-----------MIE 89 D + + F + + ID +N +E Sbjct: 147 LLPHELSMETLDKSKDFALGFHAPGNFEKVLEIDTCYLAKPSMNEALSATRAFALDRGLE 206 Query: 90 MMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAI-----RLRDALHA 144 A LR + + + IVT Y R L +A+R+ + R ++ Sbjct: 207 PYAARAHTGFLRNLMLRYSEEHDELMVNIVTSWYDRELMEAYRDHLLERMKGRRMTIVNN 266 Query: 145 RKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA 204 + + K + + ERL L +R NSF Q N + E ++ Sbjct: 267 VTTRKNTVSTGEKEYVVYGDGTLRERLG----DLHFRISANSFFQTNTRQAEALYEGIMR 322 Query: 205 ATKGIQGDLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVR 263 Q D++ +LYCG G +L LA + + +E+ + S+ A N AN + N + Sbjct: 323 MAGLKQDDVVYDLYCGTGTITLYLAERCRQAVGLEVVESSIIDAAENAGANGIENAAFYQ 382 Query: 264 MSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYI 321 + K+F + ++ + I DPPR+G+ + +++ P I+Y+ Sbjct: 383 VDLKDFHTLVPTLEQYGM----------PRVIVTDPPRAGMHPKALETLLRLQPETIVYV 432 Query: 322 SCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364 SCNP +L RD + + +E + D FP+T H+E R Sbjct: 433 SCNPANLARDGKEIVQQGYRLEEVQPVDMFPHTSHVETLACFRR 476 >gi|241889432|ref|ZP_04776733.1| 23S rRNA-methyltransferase RumA [Gemella haemolysans ATCC 10379] gi|241863975|gb|EER68356.1| 23S rRNA-methyltransferase RumA [Gemella haemolysans ATCC 10379] Length = 451 Score = 246 bits (628), Expect = 4e-63, Method: Composition-based stats. Identities = 77/383 (20%), Positives = 146/383 (38%), Gaps = 38/383 (9%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQ---VPN---LQIFRSE-PIHYRMRAEFHIWHDGDD 57 L YE+QL K L + P+ L+ S YR + +F + Sbjct: 85 LAHVSYEKQLEYKRTILLDAFDKYYRLPKPDKLVLKTLASPVTEGYRNKNQFPLAVRNGR 144 Query: 58 LYHIMFDQQTKERMRIDYFMPGSL---LINALMIEMMATIRLEPLLRAKLFQIDYLTSQS 114 + ++ + + + + I+ + I L +++ ++E K + + Y+ +++ Sbjct: 145 VIAGLYKEGSNDLVEINEDLALHENGNKITNLAKKLLGKYKVEISTNKKNYGVKYIATRT 204 Query: 115 ----DQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIG------RANKTKICLDR 164 VT + + + L+ + + + ++ Sbjct: 205 SFYNGDVQVTFVANTDKIKNMDKVVNELKRERIVKSIILNITNDKDHLVMGTESVTLYGS 264 Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNF 223 DY+ E++ Y SF Q N + + V+ + D+ L+ YCG G Sbjct: 265 DYIVEKIG----DTKYELSAKSFFQLNPPATKKLYDKVVEFAALKETDVVLDAYCGVGTI 320 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 ++R+ V V+I ++E A N+ N++ N V + + ++ Sbjct: 321 GQYVSRNCKEVYGVDIIPAAIEDANDNVKLNNLKNCTYVAGDANKIVPRWKK-------- 372 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSILSTTHTIE 342 F VDPPR GL ++ I+Y+SCNP +L RDL +L+ + I Sbjct: 373 ----KGINFDVAIVDPPRVGLGPLAKNLLAVEAKKIVYVSCNPSTLARDLKVLTRKYKIR 428 Query: 343 RLALFDQFPYTRHMECGVLLVRK 365 R+ D FP T +E V L+RK Sbjct: 429 RIQPVDMFPGTAAVEAVVELIRK 451 >gi|56751281|ref|YP_171982.1| RNA methyltransferase [Synechococcus elongatus PCC 6301] gi|56686240|dbj|BAD79462.1| probable RNA methyltransferase [Synechococcus elongatus PCC 6301] Length = 455 Score = 246 bits (628), Expect = 4e-63, Method: Composition-based stats. Identities = 76/379 (20%), Positives = 132/379 (34%), Gaps = 44/379 (11%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWH-DGDDLYHIMF 63 Y Q+ K ++ M + I P+ YR + + + D ++ F Sbjct: 94 DYPAQVEAKTVIVQDAMQRLGQLETEVQPTIAAPYPLGYRNKVSYPLRRSDRGEVQAGYF 153 Query: 64 DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-----------LRAKLFQIDYLTS 112 + + + ++ +N L+ + A I LR +I T Sbjct: 154 RKGSHRLINLNQCPVQDDRLNPLLAGIKADIAARDWPIYDEQTRSRGLRHLGLRIGQRTG 213 Query: 113 QSDQAIVTLIYHRLLDDAWRECAI----RLRDALHARKYQIQLIGRANKTKICLDRDYVD 168 + ++ +A E + + ++T R Y+ Sbjct: 214 EILITLIATDDQLPEVEAQAEQWLTDYPNVVGVCLNLNPSHGNRILGDETHCLAGRPYLI 273 Query: 169 ERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA 228 E L L + +F Q N +L + +G L +LYCG G +L LA Sbjct: 274 ECL----DDLEFAIGPETFFQVNTEQAERLLPILKDFLRG-SDRLFDLYCGVGTLTLPLA 328 Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288 VL +EI SV A+ N N ++NV+ + + + Sbjct: 329 SEVGSVLGLEILPESVVQAQQNADRNGISNVEFRAGAVEILLAQI--------------- 373 Query: 289 SYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILSTT--HTIERL 344 + +DPPR G + A + ++ + I Y+SCNP +L RDL L + + + Sbjct: 374 PESPDAVLLDPPRKGCEPAVIEVLRDRQPQRIAYVSCNPATLARDLQALCAGDRYRLLLV 433 Query: 345 ALFDQFPYTRHMECGVLLV 363 D FP T H+E LL Sbjct: 434 QPLDFFPQTAHVETVALLE 452 >gi|312873042|ref|ZP_07733102.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners LEAF 2062A-h1] gi|312874144|ref|ZP_07734178.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners LEAF 2052A-d] gi|312875643|ref|ZP_07735644.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners LEAF 2053A-b] gi|329920153|ref|ZP_08276984.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners SPIN 1401G] gi|311088897|gb|EFQ47340.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners LEAF 2053A-b] gi|311090214|gb|EFQ48624.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners LEAF 2052A-d] gi|311091564|gb|EFQ49948.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners LEAF 2062A-h1] gi|328936607|gb|EGG33051.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners SPIN 1401G] Length = 457 Score = 246 bits (628), Expect = 5e-63, Method: Composition-based stats. Identities = 74/386 (19%), Positives = 151/386 (39%), Gaps = 40/386 (10%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHDGDD 57 L Y+ QL K + ++ +L F N Q I + +YR +A++ I + + Sbjct: 88 LAHLDYDSQLLFKKELIKDSLLKFHPRNYQKIKIKNTIPAPKQWYYRNKAQYQIENIKNK 147 Query: 58 LYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLFQ 106 + M+ ++++ + + S LI + I + + + ++ + + Sbjct: 148 ISLGMYAPKSQKIIDLPIMPTQSKNTQKVEFAIKKLIEKMHIAIADSRYKKDGIKTVVVR 207 Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDAL---HARKYQIQLIGRANKTKICLD 163 + T + +VT+ + D E I L + + + NKT + Sbjct: 208 QSHATDEIQVTLVTIGKNIKNLDKLAEKIIELENVVSVFQNESQWNNPLVWGNKTTKLIG 267 Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGN 222 ++Y+ E++ + +F Q N + L + +L + Y G G Sbjct: 268 KNYITEQILNK----KFILSPRAFFQLNPEQTEVLYSTALNYLELNANSILVDAYAGVGT 323 Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282 ++ + +V+ +E ++ A++N N+V N + + S ++ M+++ Sbjct: 324 LGILASEKVKQVIGIESIPEAIADAQFNCRLNNVKNAEYINGSVEKILPQMQKD------ 377 Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLSILSTTHT 340 + VDPPR+GL+ V + +YISCNP +L RDL +LS + Sbjct: 378 ------GIAIDALIVDPPRTGLNKQLVKTLLTCKPKDFVYISCNPSTLARDLVLLSQAYD 431 Query: 341 IERLALFDQFPYTRHMECGVLLVRKP 366 + + D P T E LV + Sbjct: 432 VRLIQPVDMMPQTPRWEGIAKLVLRK 457 >gi|224024090|ref|ZP_03642456.1| hypothetical protein BACCOPRO_00809 [Bacteroides coprophilus DSM 18228] gi|224017312|gb|EEF75324.1| hypothetical protein BACCOPRO_00809 [Bacteroides coprophilus DSM 18228] Length = 504 Score = 246 bits (628), Expect = 5e-63, Method: Composition-based stats. Identities = 80/402 (19%), Positives = 151/402 (37%), Gaps = 57/402 (14%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFRS-----EPIHYRMRAEFH-------------- 50 YE Q+ K ++ + L FR + + YR + E+ Sbjct: 119 YEDQIKYKQKQVFDNLTRIGKVELPEFRPILGSEKTMFYRNKLEYTFSNKRWLTEEEVKQ 178 Query: 51 -IWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----LRAK-- 103 + +D + + + I+ + N + + LR + Sbjct: 179 DVKYDQMNAVGFHIPGAFDKVLAIEKCWLQDDISNRIRNSIRDYAYAHNYPFFDLRTQEG 238 Query: 104 -LFQIDYLTSQSDQAIVTLIYHRLLDDA---WRECAIRLRDALHARKYQIQLIGRA-NKT 158 L + TS + + +V L D+ +E + D+ + +I N T Sbjct: 239 MLRNMMVRTSSTGELMVLLQCKITNDEELAKMKELLQYVADSFPEITSLLYVINNKCNDT 298 Query: 159 ------KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD 212 ++ +D++ E + L ++ SF Q N+ + L V G++GD Sbjct: 299 IGDLDVEVFSGKDHIFEEM----EGLRFKVGPKSFYQTNSEQAYN-LYKVAREFAGLEGD 353 Query: 213 --LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270 + +LY G G + ++R +V+ +E ++E A+ N N + N K+ Sbjct: 354 ELVYDLYTGTGTIANFVSRRARKVIGIEYVPEAIEDAKVNSQINGITNTLFYAGDMKDIL 413 Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSL 328 +D R I DPPR+G+ + + ++ A I+Y+SCNP + Sbjct: 414 T-----------EDFIREHGRPDVIITDPPRAGMHNDVINVILAAEPKRIVYVSCNPATQ 462 Query: 329 CRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRKPSGWH 370 RDL +L + + + D FP+T H+E VLL ++ H Sbjct: 463 ARDLQLLDGKYKVTAVQPVDMFPHTHHVENVVLLEKREEPKH 504 >gi|197336274|ref|YP_002156880.1| 23S rRNA (uracil-5-)-methyltransferase [Vibrio fischeri MJ11] gi|226725398|sp|B5FAG4|RUMA_VIBFM RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|197317764|gb|ACH67211.1| 23S rRNA (uracil-5-)-methyltransferase [Vibrio fischeri MJ11] Length = 438 Score = 246 bits (628), Expect = 5e-63, Method: Composition-based stats. Identities = 95/369 (25%), Positives = 155/369 (42%), Gaps = 26/369 (7%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN---LQIFRSEPIHYRMRAEFHIWHDGDDL 58 L Q+E+Q+ K ++L+++M V +Q E + YR RA + Sbjct: 90 GCNLQHLQHEEQIVAKNEKLQELMKKQGVSQGEMVQPIMGEELSYRRRARISLMI-NKQT 148 Query: 59 YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAI 118 + F + K+ I +L+ L + + L L+ K Q+D Sbjct: 149 NQLDFGFRKKQSKAIVNVRHCPVLVQELDQHLESLFTLLNQLKGKKNLGHVELVQADNGS 208 Query: 119 VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTL 178 V LI H + D + L + R + L+ A+ L+ +E + T Sbjct: 209 VLLIRH--VADFNEKDHQALVNYCEERNLILYLMPEAD----VLNHVRGEEPFYLIDGTK 262 Query: 179 IYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAV 237 IY F Q N +N M+E L+ + D +L+L+CG GNFSL LA+ V+ + Sbjct: 263 IY-FTPKDFIQVNRKVNEQMVEQALSWLDLNENDSVLDLFCGLGNFSLPLAKKVKTVVGI 321 Query: 238 EIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFV 297 E V+ A+ N NH++NV + + +E D S +F I + Sbjct: 322 EGVDDMVQRAKLNAERNHLSNVSFYQANLEE------------EASDQVWASTKFTKILL 369 Query: 298 DPPRSGLDDATVGMVQAYPH-ILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRH 355 DP R+G + + P ++Y+SCNP +L RD +L + RL + D FP+T H Sbjct: 370 DPARAGAAGVMETVAKLKPQTVVYVSCNPATLARDSQLLIQHGFKLTRLGMLDMFPHTGH 429 Query: 356 MECGVLLVR 364 +E L R Sbjct: 430 LESMALFER 438 >gi|46447178|ref|YP_008543.1| putative rRNA methyltransferse [Candidatus Protochlamydia amoebophila UWE25] gi|51316628|sp|Q6MAY1|Y1544_PARUW RecName: Full=Uncharacterized RNA methyltransferase pc1544 gi|46400819|emb|CAF24268.1| putative rRNA methyltransferse [Candidatus Protochlamydia amoebophila UWE25] Length = 442 Score = 246 bits (628), Expect = 5e-63, Method: Composition-based stats. Identities = 88/401 (21%), Positives = 152/401 (37%), Gaps = 50/401 (12%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAF---QVPNLQIFRSEPIHYRMRAEFHIWHDGDDL 58 YE QL +K ++ + + V I S P HYR + E D Sbjct: 51 GCCWQQLPYELQLKQKEKSIQNLFKPYLNENVKWHSIIPSSPWHYRNKMELTFSSDKAGR 110 Query: 59 YH---IMFDQQTK------ERMRIDYFMPGSLLINAL----MIEMMATIRLEPLLRAKLF 105 + IM + + +F + I ++ I+ LR Sbjct: 111 RYLGLIMQGTRGHVFQMKECLLANGWFAQAARAIQKWWDNSDVQAYHAIKDRGSLRTLTL 170 Query: 106 QIDYLTSQSDQAIVT--LIYHRLLDDAWRECAIRLRDALH--------ARKYQIQLIGRA 155 + T + + L + LRD++ + +IQ I + Sbjct: 171 REGLRTGDRLVMLTVSGNPDYALTKSQLQSFVQVLRDSIELSNSDQKLSVFLRIQQIAKG 230 Query: 156 NKTK----ICLDRDYVDERLTVAG-----RTLIYRQIENSFTQPNAGINVHMLEWVLA-A 205 T + D++ E+L + +TL +R ++F QPN + L A Sbjct: 231 RPTNFYEMLLYGPDHIREKLYLPDFNEAIQTLNFRISPSAFFQPNTEQAEKLYSQALKLA 290 Query: 206 TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265 + +LYCG G + A++ V+ +E+++ SV AR N+ N ++NV I Sbjct: 291 DLSASHVVYDLYCGTGTLGICSAKYVKEVIGIELSRESVLDARENVKENGLSNVTIKSGD 350 Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISC 323 + +A+ +E +S + + VDPPR GLD + + P ++YISC Sbjct: 351 VGQVLEALSQE-----------NSLKPDVVMVDPPRIGLDAKAIKHILDLKAPKLVYISC 399 Query: 324 NPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLV 363 NP + +L L + ++ + DQFP T H+E LL Sbjct: 400 NPKTQVMNLGPLIDGGYQLQIVQPVDQFPQTVHVENITLLT 440 >gi|331090275|ref|ZP_08339162.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lachnospiraceae bacterium 3_1_46FAA] gi|330401894|gb|EGG81469.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lachnospiraceae bacterium 3_1_46FAA] Length = 459 Score = 246 bits (628), Expect = 5e-63, Method: Composition-based stats. Identities = 86/393 (21%), Positives = 155/393 (39%), Gaps = 48/393 (12%) Query: 2 SGTLL-IDQYEQQLAEKVDRLRQMMLAFQVPN--LQIFRSEP--IHYRMRAEFHI---WH 53 G + YE+Q+ K ++R++M + ++ P YR + EF + Sbjct: 84 GGCMYQTMPYEEQMKMKEGQIRRIMDEAVDGEYLFEGVKASPKEFAYRNKMEFSFGDEYK 143 Query: 54 DGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEP-----------LLRA 102 DG + T + + +N +++ ++ + LR Sbjct: 144 DGPLSLGLHKKGSTYDVLTASDCKLVHEDMNKILVCVLEYFKERKVSYYKKMQHVGYLRH 203 Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRL------RDALHARKYQIQLIGRAN 156 L + T + +VT E ++L LH + + +++ Sbjct: 204 LLLRRGDTTGEILVNLVTTTQEEYDLSELTEQLLQLPLEGKIVGILHILNDSLSDVVKSD 263 Query: 157 KTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG-DLLE 215 +T++ +D+ E+L L ++ SF QPN + E V I+ + + Sbjct: 264 ETRVLYGQDFFYEKLL----GLQFKITPFSFFQPNTKGAEVLYETVREYIGDIRDLTVFD 319 Query: 216 LYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275 L+ G G S VLA +V+ VEI + +VEAA+ N N ++N + + E ++ Sbjct: 320 LFSGTGTISQVLAPVAKKVIGVEIVEEAVEAAKENAERNGLSNCEFIAGDVFEVLDDIKE 379 Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLS 333 + I +DPPR G+ + + I+YISC SL RDL Sbjct: 380 ---------------KPDVIILDPPRDGIHPKALPKILDYGVDRIVYISCKMTSLARDLE 424 Query: 334 ILST-THTIERLALFDQFPYTRHMECGVLLVRK 365 ++ +T+E++ DQF T H+E LL RK Sbjct: 425 LIQQRGYTVEKMTAVDQFCETVHVETVALLTRK 457 >gi|327314509|ref|YP_004329946.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella denticola F0289] gi|326945121|gb|AEA21006.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella denticola F0289] Length = 478 Score = 246 bits (628), Expect = 5e-63, Method: Composition-based stats. Identities = 80/403 (19%), Positives = 147/403 (36%), Gaps = 61/403 (15%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPNLQIFRS-----EPIHYRMRAEFHI----WHDGDDLY 59 Y +QL K ++ + L FR YR + EF W+ ++L Sbjct: 91 PYAEQLKAKQQQVYDQLSRIGKVELPEFRPIMGSVHTKEYRNKLEFGCASKRWYTAEELQ 150 Query: 60 HIMFDQQTKE-------------RMRIDYFMPGSLLINALMIEMMATIRLEPL------- 99 + D E I+ L N + ++ + Sbjct: 151 ALPEDAGLSEGAIGFHITGAFDKVYPIEKCWLMDDLCNQIRNDIRDYALGTGMKFYDIRA 210 Query: 100 LRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTK 159 L I S + + +V + +H ++ A L + R QI + + K Sbjct: 211 QHGLLRDIMVRNSNTGEWMVLIQFHYD-EEEDDARAKALMQHVSDRFPQITSLFYVDNQK 269 Query: 160 -----------ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKG 208 + D++ E + L ++ SF Q N H+ V A Sbjct: 270 GNDTFNDLDLIVFKGNDHIFETM----EDLKFKVGPKSFYQTNTEQAYHLYS-VARAFAA 324 Query: 209 IQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266 + G+ + +LY G G + +AR+ +V+ +E ++E A+ N N ++N Sbjct: 325 LTGNELVYDLYTGTGTIANFVARNARKVIGIEYVPEAIEDAKVNAEINKIDNTLFYAGDM 384 Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCN 324 K+ +D I DPPR+G+ + ++ + I+Y+SCN Sbjct: 385 KDILT-----------EDFICRHGHPDVIITDPPRAGMHQDVISVILGASPKRIVYVSCN 433 Query: 325 PDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRKPS 367 P + RDL++L + + + D FP+T H+E VLL ++ + Sbjct: 434 PATQARDLALLDADYRVAAVQPVDMFPHTPHVENVVLLEKREA 476 >gi|126667181|ref|ZP_01738155.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Marinobacter sp. ELB17] gi|126628337|gb|EAZ98960.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Marinobacter sp. ELB17] Length = 441 Score = 246 bits (628), Expect = 5e-63, Method: Composition-based stats. Identities = 86/378 (22%), Positives = 147/378 (38%), Gaps = 33/378 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIW--HDG 55 +L E Q+A K + L++ F + R++ + YR +A + Sbjct: 79 GCSLQHMSVEAQIAFKENTLKEHFTHFGGIEPEQWVKPLRADTLGYRRKARLGVRFVTAR 138 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115 + + ++ + ID + I ++ + + ++ Q++ Sbjct: 139 ESVLVGFREKSSNFLTDIDRCLVLDPRIGERIMPLRELLHGMDAF-DRIPQVEVACGDDV 197 Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL---DRDYVDERLT 172 +V R ++D +L I L + T + + DERL+ Sbjct: 198 AVMV----FRNMEDLSAGDRSKLIVFGQNHDLHIYLQPKGPDTVHRIWPKSAGHQDERLS 253 Query: 173 --VAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLAR 229 + L FTQ NA IN M++ + G+ +L+L+CG GNF+L LAR Sbjct: 254 YSLPEFDLTLAFHPTDFTQVNASINQVMVKRAIDWLDVQPGERVLDLFCGLGNFTLPLAR 313 Query: 230 HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNRLKDIDIH 288 +V+ VE VE R N A N ++NV +FT Sbjct: 314 RGGQVVGVEGDDAMVERGRENAALNGLDNVTFFGADLHGDFT-------------GQSWA 360 Query: 289 SYRFKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSIL-STTHTIERLAL 346 F I +DPPRSG +D + I+Y+SCNP +L RD ++ + + + + Sbjct: 361 KEGFDKILIDPPRSGAEDICQYLTAFNASRIVYVSCNPATLARDAGVMVRNGYRLVQAGV 420 Query: 347 FDQFPYTRHMECGVLLVR 364 D FP+T H+E L R Sbjct: 421 MDMFPHTTHVESIALFER 438 >gi|296449152|ref|ZP_06890939.1| 23S rRNA (uracil-5-)-methyltransferase [Clostridium difficile NAP08] gi|296880869|ref|ZP_06904817.1| 23S rRNA (uracil-5-)-methyltransferase [Clostridium difficile NAP07] gi|296261971|gb|EFH08779.1| 23S rRNA (uracil-5-)-methyltransferase [Clostridium difficile NAP08] gi|296428156|gb|EFH14055.1| 23S rRNA (uracil-5-)-methyltransferase [Clostridium difficile NAP07] Length = 453 Score = 246 bits (627), Expect = 5e-63, Method: Composition-based stats. Identities = 82/393 (20%), Positives = 144/393 (36%), Gaps = 49/393 (12%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLA-----FQVPNLQIFRSEPIHYRMRAE--FHIWHD 54 TLL YE+QL K ++ + L FQ ++ E +YR + E F Sbjct: 81 GCTLLSVPYEKQLEIKEKQVMDLFLKQDLFGFQFLGIE-GSPENKYYRNKMEYTFGDEVK 139 Query: 55 GDDLYHIMFDQQTKERMR-IDYFMPGSLLI-----------NALMIEMMATIRLEPLLRA 102 L + + ++ ++ M N + T+ + LR Sbjct: 140 NGPLTLGLHKKGKHIDIQTVEECMLVDEDFSKILVSSVEFFNEKKLPYYRTMNHKGYLRH 199 Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAI------RLRDALHARKYQIQLIGRAN 156 + + T++ IVT + +++ + L LH + + + Sbjct: 200 LVVRKGIHTNEIMVNIVTSSQEDFDMNEFKDMLLGIDLKSELVGVLHTINDGLADAVQCD 259 Query: 157 KTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-E 215 + ++ RDY+ E + L ++ SF Q N + ++ + Sbjct: 260 ELRVLYGRDYIQEEIL----GLKFKISPFSFFQTNTKGAEVLYSIARDFIGDYNDKVVFD 315 Query: 216 LYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275 LY G G+ V+A +V +EI + +V AA N N + N + + + + ++ Sbjct: 316 LYSGTGSIGQVMAGAAKKVYGIEIVEEAVVAANENAKLNGLTNCEFIAGDVAKVVKDLK- 374 Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLS 333 + I VDPPR G+ + + + I+YISCNP SL DL Sbjct: 375 --------------DKPDLIIVDPPRPGIHKDAIRDICGFGAKEIVYISCNPKSLVVDLV 420 Query: 334 ILST-THTIERLALFDQFPYTRHMECGVLLVRK 365 + I + D FP T H E V LVR+ Sbjct: 421 DFKRYGYEIRMVKCMDMFPNTPHCETIVKLVRE 453 >gi|81299052|ref|YP_399260.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Synechococcus elongatus PCC 7942] gi|81167933|gb|ABB56273.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Synechococcus elongatus PCC 7942] Length = 455 Score = 246 bits (627), Expect = 5e-63, Method: Composition-based stats. Identities = 76/379 (20%), Positives = 132/379 (34%), Gaps = 44/379 (11%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWH-DGDDLYHIMF 63 Y Q+ K ++ M + I P+ YR + + + D ++ F Sbjct: 94 DYPAQVEAKTVIVQDAMQRLGQLETEVQPTIAAPYPLGYRNKVSYPLRRSDRGEVQAGYF 153 Query: 64 DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-----------LRAKLFQIDYLTS 112 + + + ++ +N L+ + A I LR +I T Sbjct: 154 RKGSHRLINLNQCPVQDDRLNPLLAGIKADIAARDWPIYDEQTRSRGLRHLGLRIGQRTG 213 Query: 113 QSDQAIVTLIYHRLLDDAWRECAI----RLRDALHARKYQIQLIGRANKTKICLDRDYVD 168 + ++ +A E + + ++T R Y+ Sbjct: 214 EILITLIATDDQLPEVEAQAEQWLTDYPNVVGVCLNLNPSHGNRILGDETHCLAGRPYLI 273 Query: 169 ERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA 228 E L L + +F Q N +L + +G L +LYCG G +L LA Sbjct: 274 ECL----DDLEFAIGPETFFQVNTEQAERLLPILKDFLRG-SDRLFDLYCGVGTLTLPLA 328 Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288 VL +EI SV A+ N N ++NV+ + + + Sbjct: 329 SEVGSVLGLEILPESVVQAQQNADRNGISNVEFRAGAVEILLAQI--------------- 373 Query: 289 SYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILSTT--HTIERL 344 + +DPPR G + A + ++ + I Y+SCNP +L RDL L + + + Sbjct: 374 PESPDAVLLDPPRKGCEPAVIEVLRDRQPQRIAYVSCNPATLARDLQALCAGDRYRLLLV 433 Query: 345 ALFDQFPYTRHMECGVLLV 363 D FP T H+E LL Sbjct: 434 QPLDFFPQTAHVETVALLE 452 >gi|150015413|ref|YP_001307667.1| RNA methyltransferase [Clostridium beijerinckii NCIMB 8052] gi|149901878|gb|ABR32711.1| RNA methyltransferase, TrmA family [Clostridium beijerinckii NCIMB 8052] Length = 452 Score = 246 bits (627), Expect = 5e-63, Method: Composition-based stats. Identities = 77/395 (19%), Positives = 142/395 (35%), Gaps = 53/395 (13%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWHDGDD 57 + YE+QL + ++++ V + YR + EF + Sbjct: 79 GCSSQSIPYEKQLEFLSEEVKELFREANVDTGEYLGIQGSPNQWEYRNKMEFTFGDEAKG 138 Query: 58 ---LYHIMFDQQTKERMRIDYFMPGSLLINAL-----------MIEMMATIRLEPLLRAK 103 + ++ + +D + + ++ E LR Sbjct: 139 EPLSLGMHMRGKSFGILTVDECKLVDEDYRKIIRLTADYFREKDLPYYRIMKAEGYLRHL 198 Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDA---------LHARKYQIQLIGR 154 + + T + +V L+ +D E LRD +H Sbjct: 199 VIRKAQNTG---EILVNLVTTTQIDFDLGEYVKLLRDQSYKGNLVSIIHTENNSKSDAVI 255 Query: 155 ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-L 213 K + +DY+ E L L + SF Q N + V + + Sbjct: 256 PEKVNVLFGKDYIRETLL----ELQFNISPFSFFQTNTKGAESLYSIVKEFMGDSEEKIV 311 Query: 214 LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273 +LYCG G ++A + +V+ +E+ + +VEAAR N N +NN + + E + + Sbjct: 312 FDLYCGTGTIGQIVAPNAKKVIGIELIEEAVEAARENAKLNGLNNCEFIAGDVAEIIKTV 371 Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRD 331 + + I +DPPR+G+ + V + P I+Y+SCNP +L D Sbjct: 372 K---------------VKPDIIILDPPRTGVHPKALDYVIKFNAPEIIYVSCNPKTLVND 416 Query: 332 LSIL-STTHTIERLALFDQFPYTRHMECGVLLVRK 365 L +L + + + + D FP T H E V L ++ Sbjct: 417 LRVLTEKGYKVIKTKVKDMFPNTPHAETVVRLTKE 451 >gi|297585038|ref|YP_003700818.1| TrmA family RNA methyltransferase [Bacillus selenitireducens MLS10] gi|297143495|gb|ADI00253.1| RNA methyltransferase, TrmA family [Bacillus selenitireducens MLS10] Length = 462 Score = 246 bits (627), Expect = 6e-63, Method: Composition-based stats. Identities = 80/392 (20%), Positives = 148/392 (37%), Gaps = 43/392 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL-------QIFRSEPIHYRMRAEFHIWHD 54 L YE+QL K + L Q + I P HYR +++ + Sbjct: 87 GCQLQHVSYERQLQAKKELLEQAFSRYTKIPPHKLVIHDTIGMDNPWHYRNKSQMQVGQT 146 Query: 55 GDDL-YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL------LRAKLFQI 107 DD ++ + + + ID + L N + E+ I L + L + Sbjct: 147 EDDTVIAGLYAADSHDLVDIDECIVQHPLTNEVNRELKRIISDLKLSIYDKERKKGLVRS 206 Query: 108 DYLTS--QSDQAIVTLIYHRLLDDAWRECAIRLRDALHAR-------KYQIQLIGRANKT 158 + + ++D+ +TL+ + R+++A + + +T Sbjct: 207 LVVRTAFETDEWQLTLVISKKSFPKQDVFVARVKEAFPSVTSISLNVNPSDTPLVFGEQT 266 Query: 159 KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELY 217 K + ERL L Y+ SF Q N + + V A +++ Y Sbjct: 267 KTIEGESSIRERLG----ELDYQLAPESFFQLNPAQTKVLYDIVKKMAGFKATDRVVDAY 322 Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277 CG G+ + A + ++I + +V AR N A + N ++++ ++E Sbjct: 323 CGVGSIGIWAASEAGELRGMDITEAAVANARRNAAEAGIANAHYETGTAEDILMKWQKE- 381 Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM--VQAYPHILYISCNPDSLCRDLSIL 335 + +I VDPPRSGLD + V ++Y+SCNP +L ++ L Sbjct: 382 -----------GFTADSIIVDPPRSGLDRTLIETVGVLKPKQLIYVSCNPSTLAKNADEL 430 Query: 336 ST-THTIERLALFDQFPYTRHMECGVLLVRKP 366 + I+ + D FP T H+E ++ R+ Sbjct: 431 GKYGYRIKDVQPVDMFPQTSHVEAVTVMYRED 462 >gi|146283009|ref|YP_001173162.1| 23S rRNA 5-methyluridine methyltransferase [Pseudomonas stutzeri A1501] gi|145571214|gb|ABP80320.1| probable RNA methyltransferase [Pseudomonas stutzeri A1501] Length = 450 Score = 246 bits (627), Expect = 6e-63, Method: Composition-based stats. Identities = 89/372 (23%), Positives = 140/372 (37%), Gaps = 30/372 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHI-WHDGD 56 TL + QLA K L + + + YR RA + WH D Sbjct: 99 GCTLQHAAIDDQLALKQRTLGEQLARLAELEPERWAEPLTGPAFGYRRRARLAVRWHTRD 158 Query: 57 DLYHIMFDQ-QTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115 + F +++ + ID + L+ ++ + + ++ + ++ Sbjct: 159 KRLEVGFRATASQDIVAIDQCPVLVQPLQTLLPGLLEALHGL-TKPQAIGHVELFSGTAE 217 Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175 ++ R RLR A + Q+ L G + + + RL Sbjct: 218 AVLI-----RHTAPLPEIDLARLRTFARAHQAQLWLQGDSEPQADVPGQ-ALGYRLEAWD 271 Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRV 234 L +R F Q NA +N M+ L+ G+ +L+L+CG GNFSL LAR +V Sbjct: 272 LELAWR--PGDFVQVNAPVNEAMVAQALSWLGASAGERVLDLFCGLGNFSLPLARQGAQV 329 Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294 + VE + V A+ N N + V R + L D F Sbjct: 330 VGVEGVEAMVARAQDNAQRNGLEQVHFYRADLSK------------PLADAPWARSGFDA 377 Query: 295 IFVDPPRSGLDDATVGMVQAY-PHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPY 352 + +DPPR G + M Q ++Y+SCNP +L RD L S ++R L D FP Sbjct: 378 VLLDPPRDGALEIVRQMTQLQARRVVYVSCNPATLARDARELASQGFRLKRTGLLDMFPQ 437 Query: 353 TRHMECGVLLVR 364 T H E L R Sbjct: 438 TAHAEAMALFER 449 >gi|32034047|ref|ZP_00134291.1| COG2265: SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] Length = 229 Score = 246 bits (627), Expect = 6e-63, Method: Composition-based stats. Identities = 113/228 (49%), Positives = 154/228 (67%), Gaps = 5/228 (2%) Query: 4 TLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHD-----GDDL 58 L I+QY LAEK L ++ F P L++F SE H+RMRAEF +WHD ++L Sbjct: 2 NLPIEQYADLLAEKAKNLTALLAPFNPPELEVFESETGHFRMRAEFRVWHDTNEVGENEL 61 Query: 59 YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAI 118 YHIMFDQ+TK+R ++ F + LIN +M ++A I+ LL KLFQ+DYL++ S + Sbjct: 62 YHIMFDQETKQRYCVEQFPIANHLINKMMSSLLAEIKGNELLTRKLFQVDYLSTLSGEIA 121 Query: 119 VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTL 178 V+++YH+ L++ W+ A L+ L + +++Q+IGRA K KI LDRDYV+E L V GR L Sbjct: 122 VSMLYHKKLNEEWQAEAAALKARLEHQGFKVQIIGRATKQKIALDRDYVEEVLPVDGRNL 181 Query: 179 IYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLV 226 IYRQ+ENSFTQPNA +N+ MLEW + T+ GDLLELYCGNG F L Sbjct: 182 IYRQVENSFTQPNAKMNIKMLEWARSCTRHSSGDLLELYCGNGIFRLH 229 >gi|255654431|ref|ZP_05399840.1| putative tRNA (Uracil-5-)-methyltransferase [Clostridium difficile QCD-23m63] Length = 451 Score = 246 bits (627), Expect = 6e-63, Method: Composition-based stats. Identities = 82/393 (20%), Positives = 144/393 (36%), Gaps = 49/393 (12%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLA-----FQVPNLQIFRSEPIHYRMRAE--FHIWHD 54 TLL YE+QL K ++ + L FQ ++ E +YR + E F Sbjct: 79 GCTLLSVPYEKQLEIKEKQVMDLFLKQDLFGFQFLGIE-GSPENKYYRNKMEYTFGDEVK 137 Query: 55 GDDLYHIMFDQQTKERMR-IDYFMPGSLLI-----------NALMIEMMATIRLEPLLRA 102 L + + ++ ++ M N + T+ + LR Sbjct: 138 NGPLTLGLHKKGKHIDIQTVEECMLVDEDFSKILVSSVEFFNEKKLPYYRTMNHKGYLRH 197 Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAI------RLRDALHARKYQIQLIGRAN 156 + + T++ IVT + +++ + L LH + + + Sbjct: 198 LVVRKGIHTNEIMVNIVTSSQEDFDMNEFKDMLLGIDLKSELVGVLHTINDGLADAVQCD 257 Query: 157 KTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-E 215 + ++ RDY+ E + L ++ SF Q N + ++ + Sbjct: 258 ELRVLYGRDYIQEEIL----GLKFKISPFSFFQTNTKGAEVLYSIARDFIGDYNDKVVFD 313 Query: 216 LYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275 LY G G+ V+A +V +EI + +V AA N N + N + + + + ++ Sbjct: 314 LYSGTGSIGQVMAGAAKKVYGIEIVEEAVVAANENAKLNGLTNCEFIAGDVAKVVKDLK- 372 Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLS 333 + I VDPPR G+ + + + I+YISCNP SL DL Sbjct: 373 --------------DKPDLIIVDPPRPGIHKDAIRDICGFGAKEIVYISCNPKSLVVDLV 418 Query: 334 ILST-THTIERLALFDQFPYTRHMECGVLLVRK 365 + I + D FP T H E V LVR+ Sbjct: 419 DFKRYGYEIRMVKCMDMFPNTPHCETIVKLVRE 451 >gi|191638764|ref|YP_001987930.1| tRNA (Uracil-5-)-methyltransferase [Lactobacillus casei BL23] gi|190713066|emb|CAQ67072.1| tRNA (Uracil-5-)-methyltransferase [Lactobacillus casei BL23] gi|327382805|gb|AEA54281.1| RNA methyltransferase, TrmA family [Lactobacillus casei LC2W] gi|327385992|gb|AEA57466.1| RNA methyltransferase, TrmA family [Lactobacillus casei BD-II] Length = 455 Score = 246 bits (627), Expect = 6e-63, Method: Composition-based stats. Identities = 73/383 (19%), Positives = 138/383 (36%), Gaps = 47/383 (12%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPN-------LQIFRSEPIHYRMRAEFHIWHDGDDLYHIM 62 Y QL K D + Q + F+ I ++P HYR +A+F + + + Sbjct: 91 YPAQLRFKRDVVAQSLAKFKPTGWTHYDLRPTIGMAQPTHYRNKAQFPVRVIDGHVRAGL 150 Query: 63 FDQQTKERMRIDYFMPGS-----------LLINALMIEMMATIRLEPLLRAKLFQIDYLT 111 + + + + F+ + ++ L I + + +++ + + + T Sbjct: 151 YAPNSHHLIPLTKFLTQAPLTMKVVTTLRQILEQLQIPIYNEKKRSGIVKTLVVRESFAT 210 Query: 112 SQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIG-------RANKTKICLDR 164 + VT I + E + L Q I ++++ Sbjct: 211 K---EVQVTFITNSPKLPHEGELLNAIATQLPMVVSIAQNINPGETSLIWGKESRLLAGL 267 Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELYCGNGNF 223 Y+ E L ++ +F Q N + A G L++ YCG G Sbjct: 268 PYIQETLL----GRTFQLSPQAFLQLNPKQTETLYTLAAKALDLGPHDTLIDAYCGIGTV 323 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 + LA+ + ++ + A+ N AN + N +++ +E Sbjct: 324 GISLAKGNQPIYGMDTIAEGIADAKANAKANGLTNAHYSVGKAEDIFPKWVQE------- 376 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILSTTHTI 341 + + VDPPR+GL+ A + + P +YISCNP +L RDL L+ + + Sbjct: 377 -----GMKPDAVIVDPPRAGLERAFIDALLELDPPKFVYISCNPSTLARDLVSLTKRYKV 431 Query: 342 ERLALFDQFPYTRHMECGVLLVR 364 + + D FP T E V R Sbjct: 432 DWIQSIDMFPQTARCEAVVKFTR 454 >gi|303263128|ref|ZP_07349055.1| RNA methyltransferase, TrmA family protein [Streptococcus pneumoniae SP14-BS292] gi|302635727|gb|EFL66235.1| RNA methyltransferase, TrmA family protein [Streptococcus pneumoniae SP14-BS292] Length = 443 Score = 246 bits (627), Expect = 6e-63, Method: Composition-based stats. Identities = 75/380 (19%), Positives = 142/380 (37%), Gaps = 40/380 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54 ++ Y++QL K D L Q + F + I EP +YR + +F Sbjct: 81 GCQIMHLHYDKQLEFKTDLLHQALKKFAPAGYENYEIRPTIGMQEPKYYRAKLQFQTRKF 140 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----------LRAKL 104 + + ++ Q + + + + + + + + +R + Sbjct: 141 KNQVKAGLYAQNSHYLVELKDCLVQDKETQVIANRLAELLTYHQIPITDERKVLGVRTIM 200 Query: 105 FQIDYLTSQSDQAIVT---LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161 + T Q IVT L +L+ + ++ + A++ + I KT+I Sbjct: 201 VRRARKTGQVQIIIVTNRQLNLTQLVKELVKDFPEVVTVAVNTNTAKTSEI-YGEKTEII 259 Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGN 220 ++ + E + + +F Q N + E V A + L++ YCG Sbjct: 260 WGQESIQEGVL----NYEFSLSPRAFYQLNPEQTEVLYSEAVKALDVDKENHLIDAYCGV 315 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G A+ + ++I ++E A+ N +N +++E +E Sbjct: 316 GTIGFAFAKKVKTLRGMDIIPEAIEDAKRNAKRMGFDNTHYEAGTAEEIIPRWYKE---- 371 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTT 338 YR + VDPPR+GLDD + + Y ++YISCN +L RDL L Sbjct: 372 --------GYRADALIVDPPRTGLDDKLLDTILTYVPEKMVYISCNVSTLARDLVRLVEV 423 Query: 339 HTIERLALFDQFPYTRHMEC 358 + + + D FP+T E Sbjct: 424 YDLHYIQSVDMFPHTARTEA 443 >gi|160944108|ref|ZP_02091338.1| hypothetical protein FAEPRAM212_01610 [Faecalibacterium prausnitzii M21/2] gi|158444784|gb|EDP21788.1| hypothetical protein FAEPRAM212_01610 [Faecalibacterium prausnitzii M21/2] Length = 458 Score = 246 bits (627), Expect = 6e-63, Method: Composition-based stats. Identities = 79/393 (20%), Positives = 138/393 (35%), Gaps = 49/393 (12%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ---VPNLQIFRSEPI-HYRMRAEFHIWHDGDD 57 +L Y +L K + + VP L I S + YR + +F + D + Sbjct: 82 GCSLRHLDYAAELRAKQESVLDAFRRIGGLEVPVLDILPSPDVDRYRNKVQFPVGIDKNG 141 Query: 58 -LYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLE-----------PLLRAKLF 105 + +T + ++N + + A + L+R Sbjct: 142 VPCIGFYAGRTHRIVPCPDCKLQPSVLNEIGNALCAFFAQQVIRPYDEQSGKGLVRHIFL 201 Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQI-------QLIGRANKT 158 + + S Q +V L+ R + LR A + + ++ Sbjct: 202 RRG---AHSGQIMVCLVCTRAKLPHAEQLCTALRGQFPAISTILLNVNAKNTNVILGSEN 258 Query: 159 KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELY 217 I Y+++ L + R SF Q N + + D LL+LY Sbjct: 259 HILYGPGYIEDTLC----GVPVRLGPLSFYQVNTLAAERLYGVAAQYAQLTPDDTLLDLY 314 Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV---KIVRMSSKEFTQAMR 274 CG G L +A ++ VEI ++E+A+ N A + + + + Sbjct: 315 CGMGTIGLSMAGQCRELIGVEIVPEAIESAKANAARMGEAVAAKSRFFCADAGQAATQLA 374 Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDL 332 E + +DPPR G D+AT+ V A ++Y+SCNP + RD Sbjct: 375 AE------------GLHPDIVMLDPPRKGCDEATLSAVVRMAPRRVVYVSCNPATAARDA 422 Query: 333 SILST-THTIERLALFDQFPYTRHMECGVLLVR 364 + L + E++ D FP T+H+E V R Sbjct: 423 AWLEQNGYHAEKVQPVDLFPRTKHVEACVCYTR 455 >gi|293402235|ref|ZP_06646373.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291304342|gb|EFE45593.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 453 Score = 245 bits (625), Expect = 8e-63, Method: Composition-based stats. Identities = 85/391 (21%), Positives = 153/391 (39%), Gaps = 46/391 (11%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ----VPNLQIFRSEPIHYRMRAEFHIWHDGDD 57 S L+ + Q +K+ L+++ + P HYR + D Sbjct: 80 SCHLMHVSVQGQKHQKLSYLQKLCAKNKQLHIKAEEIATMKHPYHYRNKMIIGFQKDKQG 139 Query: 58 LYHIMFDQQ-TKERMRIDYF---MPGSLLINALMIEMMATIRLEP--------LLRAKLF 105 F ++ + + + I + +M +R+EP LLR + Sbjct: 140 KLQAGFYEEFSHHIIPYEQCLLHPEICDAILHTITTLMIKLRIEPYDEDKRRGLLRHVVI 199 Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGR-------ANKT 158 + ++ Q +V L+ ++ + A + L +Q + + Sbjct: 200 RYGMVSK---QIMVVLVINQQIFPARKAFVQELLKKHPQITTIVQNVNTRKTSIVLGEQE 256 Query: 159 KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELY 217 +I Y+++ L L +R SF Q N + + + + + +L+ Y Sbjct: 257 RILYGPGYIEDTLC----GLQFRISAKSFYQINHEQCEVLYKKGMELLQLTGKETVLDAY 312 Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277 CG G + A+ +V+ VE+ K +VE A+ N N + N++ V + +F Q M ++ Sbjct: 313 CGIGTIGMYAAQFAKQVIGVELNKDAVEDAKNNAKLNQIRNIRFVCDDAGKFMQKMAAKK 372 Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSIL 335 E R + +DPPRSG +A + V +LYISCNP + RDL + Sbjct: 373 E------------RLDVVILDPPRSGSSEAFIRSVATIRPKKVLYISCNPQTQLRDLQLF 420 Query: 336 ST-THTIERLALFDQFPYTRHMECGVLLVRK 365 + + L D FP T H+E VL+ RK Sbjct: 421 QKYGYVGDVLYGVDMFPNTFHVESIVLMTRK 451 >gi|283796109|ref|ZP_06345262.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium sp. M62/1] gi|291076323|gb|EFE13687.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium sp. M62/1] Length = 560 Score = 245 bits (625), Expect = 9e-63, Method: Composition-based stats. Identities = 91/415 (21%), Positives = 153/415 (36%), Gaps = 65/415 (15%) Query: 2 SGTLLID-QYEQQLAEKVDRLRQMMLAF-QVPNL--------QIFRSEPIHYRMRAEFHI 51 G L YE+QL K ++R+ + P + I YR + EF Sbjct: 78 GGCLFQTFPYEEQLKIKEGQVREFLEGVLGTPGVSGTWNFEGIIGSPAAERYRNKMEFSF 137 Query: 52 WHDGDDL--YHIMFDQQTK-ERMRIDYFMPGSLLINAL-----------MIEMMATIRLE 97 + D M + + + + + + I ++ Sbjct: 138 GDEVKDGPLALGMHKRGSFYDVVTVGGCRIVHEDFTKILLCTKEFFEERQIPFYKKMQQT 197 Query: 98 PLLRAKLFQIDYLTSQSDQAIVTLIY------------HRLLDDAWRECAI------RLR 139 LR L + T + ++T L + WRE + L Sbjct: 198 GYLRHLLVRRAVKTGEILIDLITTTQTHTLQTEQFGGTEEELLNQWREKILSLSLEGTLA 257 Query: 140 DALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML 199 LH + + + T+I +DY E L L +R SF Q N+ + Sbjct: 258 GILHTKNDTLADAVKDEGTEILFGQDYFYEELL----GLKFRISPFSFFQTNSLGAEVLY 313 Query: 200 EWVLAATKGIQGDLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN 258 E G+ G ++ +LY G G + +LA +V+ VEI + +VEA+R N N ++N Sbjct: 314 EKTREYVGGVDGKVVFDLYSGTGTIAQILAPVAQKVVGVEIVEEAVEASRVNAERNGLSN 373 Query: 259 VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYP 316 + + LK + + + I +DPPR G+ + + Sbjct: 374 CEFIAGDV---------------LKVVGELTDKPDLIVLDPPRDGIHPKAIEKIIDFGVE 418 Query: 317 HILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVRKPSGWH 370 ++Y+SC P SL RDL IL+ + +ER D FP T ++E VLL + + H Sbjct: 419 RMVYVSCKPTSLARDLEILTARGYAVERACCVDMFPGTGNVETVVLLSKLNTKQH 473 >gi|304439903|ref|ZP_07399797.1| 23S rRNA (uracil-5-)-methyltransferase [Peptoniphilus duerdenii ATCC BAA-1640] gi|304371642|gb|EFM25254.1| 23S rRNA (uracil-5-)-methyltransferase [Peptoniphilus duerdenii ATCC BAA-1640] Length = 415 Score = 245 bits (625), Expect = 9e-63, Method: Composition-based stats. Identities = 82/374 (21%), Positives = 147/374 (39%), Gaps = 40/374 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQV----PNLQIFRSEPIHYRMRAEFHIWHDGDD 57 L+ Y+++L K ++ + + +P YR + + D Sbjct: 70 GCPLIEMDYKRELEWKRSKVENAIRRIGKINREVEPTVENKKPFRYRNIVQLKV----QD 125 Query: 58 LYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQA 117 F + T E + ID I + ++++ + + +I+Y + Sbjct: 126 KKIGYFKKGTHEVLDIDDCKIAPEEIKNV-VKILKNWNGLSSIEQVIIRINY----QGEM 180 Query: 118 IVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD----YVDERLTV 173 +V L L L + L K I + NKT+ + Y +++ Sbjct: 181 MVILGTRTGLKKE-----NNLLEKLLDLKV-ISVYEDINKTRNHYGYELREIYKSKQMYE 234 Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFD 232 + +F Q N ++ + + + D +++LY G G SL +A + Sbjct: 235 KIGDHKFIVEPGTFLQVNPYQVENLYNLAVEGLELKKEDKVMDLYSGIGTISLKMAEQVE 294 Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292 V+AVE + SVE AR N N + NV+ R ++ T+ + + Y Sbjct: 295 SVIAVESFEGSVEIARKNAELNGIENVEFARGKVEDLTEKLEK--------------YTV 340 Query: 293 KTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILSTTHTIERLALFDQF 350 + +DPPR+G + + + I Y+SCNP +L RDL ILS + IE++ D F Sbjct: 341 NKVLLDPPRAGAKEEALRTIIKLNPERITYVSCNPSTLARDLQILSEKYKIEKIIPVDMF 400 Query: 351 PYTRHMECGVLLVR 364 ++ H EC LL R Sbjct: 401 SHSSHCECVALLTR 414 >gi|52841686|ref|YP_095485.1| 23S rRNA 5-methyluridine methyltransferase [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|60404654|sp|Q5ZVI4|RUMA_LEGPH RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|52628797|gb|AAU27538.1| 23S rRNA (uracil-5-)methyltransferase RumA [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 444 Score = 245 bits (625), Expect = 9e-63, Method: Composition-based stats. Identities = 84/378 (22%), Positives = 150/378 (39%), Gaps = 34/378 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSE----PIHYRMRAEFHIWHDGDD 57 +L E+Q+ K L ++ + Q S +YR +A Sbjct: 85 GCSLQHMSAEEQIRFKQSHLLDLLSRYGHTEPQSMLSPLTSHHWNYRNKARLSTRFVEKK 144 Query: 58 LYHIMFDQQTKER---MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQS 114 ++ ++ I+ + I+ ++ + I + + QI+ + Sbjct: 145 QSTMVGFRERNNPRFITEINQCPILNSKIDTDIVHLRKLIDTMED-KQCIAQIEVAAGDN 203 Query: 115 DQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD----RDYVDER 170 + A++ R L + +++R +Y++ L + C Y+ Sbjct: 204 EVALI----FRNLTPLTEQDELKIRKFAEQFQYKVFLQPGGLDSVFCFYPSDAHAYLSYE 259 Query: 171 LTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLAR 229 L T + N FTQ NA +N M+ + + D +L+L+CG GNFSL +A+ Sbjct: 260 LPDYQITFQFH--PNDFTQVNAELNRKMVTQAIQLMELKNSDIVLDLFCGLGNFSLPMAK 317 Query: 230 HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHS 289 H RV+ VE K VE A N +NH+ NV + + + ++ + Sbjct: 318 HCSRVIGVEGNKNMVERAYMNAKSNHITNVDFYAANLDDVMEV------------RNLVN 365 Query: 290 YRFKTIFVDPPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDLSIL--STTHTIERLAL 346 F + +DPPRSG + + P I+Y+SCNP +L RD IL + + + Sbjct: 366 TSFSKVLIDPPRSGALEIVKQIDSIDPERIVYVSCNPITLARDTDILVNQKGYVLITAGV 425 Query: 347 FDQFPYTRHMECGVLLVR 364 D FP+T H+E L + Sbjct: 426 MDMFPHTAHVESIALFQK 443 >gi|325859605|ref|ZP_08172738.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella denticola CRIS 18C-A] gi|325482885|gb|EGC85885.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella denticola CRIS 18C-A] Length = 478 Score = 245 bits (625), Expect = 9e-63, Method: Composition-based stats. Identities = 79/403 (19%), Positives = 145/403 (35%), Gaps = 61/403 (15%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPNLQIFRS-----EPIHYRMRAEFHI----WHDGDDLY 59 Y +QL K ++ + L FR YR + EF W+ ++L Sbjct: 91 PYAEQLKAKQQQVYDQLSRIGKVELPEFRPIMGSVHTKEYRNKLEFGCASKRWYTAEELQ 150 Query: 60 HIMFDQQTKE-------------RMRIDYFMPGSLLINALMIEMMATIRLEPL------- 99 + D E I+ L N + ++ + Sbjct: 151 ALPEDAGLSEGAIGFHITGAFDKVYPIEKCWLMDDLCNQIRNDIRDYALGTGMKFYDIRA 210 Query: 100 LRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTK 159 L I S + + +V + +H ++ A L + R QI + + K Sbjct: 211 QHGLLRDIMVRNSNTGEWMVLIQFHYD-EEEDDARAKALMQHVSDRFPQITSLFYVDNQK 269 Query: 160 -----------ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKG 208 + D++ E + L ++ SF Q N H+ V Sbjct: 270 GNDTFNDLDLIVFKGNDHIFETM----EDLKFKVGPKSFYQTNTEQAYHLYS-VARTFAA 324 Query: 209 IQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266 + G+ + +LY G G + +AR +V+ +E ++E A+ N N ++N Sbjct: 325 LTGNELVYDLYTGTGTIANFIARDARKVIGIEYVPEAIEDAKVNAEINKIDNTLFYAGDM 384 Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCN 324 K+ +D I DPPR+G+ + ++ + I+Y+SCN Sbjct: 385 KDILT-----------EDFICRHGHPDVIITDPPRAGMHQDVISVILGASPKRIVYVSCN 433 Query: 325 PDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRKPS 367 P + RDL++L + + + D FP+T H+E VLL ++ + Sbjct: 434 PATQARDLALLDADYRVAAVQPVDMFPHTPHVENVVLLEKREA 476 >gi|325269116|ref|ZP_08135736.1| TrmA family RNA methyltransferase [Prevotella multiformis DSM 16608] gi|324988503|gb|EGC20466.1| TrmA family RNA methyltransferase [Prevotella multiformis DSM 16608] Length = 474 Score = 245 bits (625), Expect = 9e-63, Method: Composition-based stats. Identities = 83/401 (20%), Positives = 146/401 (36%), Gaps = 61/401 (15%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPNLQIFRS-----EPIHYRMRAEFHI----WHDGDDLY 59 Y +QL K ++ + L FR YR + EF W+ ++L Sbjct: 91 PYNEQLKAKQQQVYDQLSRIGKVELPEFRPIMGSVHTKEYRNKLEFGCANKRWYTAEELQ 150 Query: 60 HIMFDQQTKE-------------RMRIDYFMPGSLLINALMIEMMATIRLEPLL------ 100 + D E I+ L N + ++ + Sbjct: 151 ALPEDAGLSEGAIGFHITGAFDKVYPIEKCWLMDDLCNQIRNDIRDYALGTGMTFYDIRG 210 Query: 101 -RAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTK 159 L I S + + +V + +H ++ E A L + R QI + + K Sbjct: 211 QHGLLRDIMVRNSNTGEWMVLIQFHYD-EEGDEERAKALMQHVADRFPQITSLSYVDNQK 269 Query: 160 ----------ICL-DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKG 208 I DY+ E + L ++ SF Q N H+ V Sbjct: 270 GNDTFNDLDLITFKGNDYIFETM----EDLKFKVGPKSFYQTNTEQAYHLYS-VAREFAS 324 Query: 209 IQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266 + GD + +LY G G + +A +V+ +E ++E A+ N N+++N Sbjct: 325 LTGDELVYDLYTGTGTIANFVAGKARKVIGIEYVPEAIEDAKVNSEINNISNTLFYAGDM 384 Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCN 324 K+ +D R I DPPR+G+ + ++ + I+Y+SCN Sbjct: 385 KDILT-----------EDFISRQGRPDVIITDPPRAGMHPDVINVILGASPERIVYVSCN 433 Query: 325 PDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 P + RDL++L + + + D FP+T H+E VLL ++ Sbjct: 434 PATQARDLALLDADYQVAAVQPVDMFPHTPHVENVVLLEKR 474 >gi|295105028|emb|CBL02572.1| 23S rRNA m(5)U-1939 methyltransferase [Faecalibacterium prausnitzii SL3/3] Length = 457 Score = 245 bits (625), Expect = 9e-63, Method: Composition-based stats. Identities = 77/393 (19%), Positives = 136/393 (34%), Gaps = 49/393 (12%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ---VPNLQIFRSEPI-HYRMRAEFHIWHDGDD 57 +L Y +L K + + VP L I S + YR + +F + D + Sbjct: 82 GCSLRHLDYAAELRAKQESVLDAFRRIGGLEVPVLDILPSPDVDRYRNKVQFPVGIDKNG 141 Query: 58 -LYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLE-----------PLLRAKLF 105 + +T + ++N + + A + L+R Sbjct: 142 VPCIGFYAGRTHRIVPCPDCKLQPSVLNEIGNALCAFFAQQVIRPYDEQSGKGLVRHIFL 201 Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQI-------QLIGRANKT 158 + + S Q +V L+ R + LR A + + ++ Sbjct: 202 RRG---AHSGQIMVCLVCTRAKLPHAEQLCTALRGQFPAISTILLNVNAKNTNVILGSEN 258 Query: 159 KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELY 217 I Y+++ L + R SF Q N + + D LL+LY Sbjct: 259 HILYGPGYIEDTLC----GVPVRLGPLSFYQVNTLAAERLYGVAAQYAQLTPDDTLLDLY 314 Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV---KIVRMSSKEFTQAMR 274 CG G L +A ++ VEI ++E+A+ N A + + + + Sbjct: 315 CGMGTIGLSMAGQCRELIGVEIVPEAIESAKANAARMGEAVAAKSRFFCADAGQAATQLA 374 Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDL 332 E + +DPPR G D+AT+ V A ++Y+SCNP + RD Sbjct: 375 AE------------GLHPDIVMLDPPRKGCDEATLSAVVRMAPRRVVYVSCNPATAARDA 422 Query: 333 SILST-THTIERLALFDQFPYTRHMECGVLLVR 364 + L + E++ D FP T+H E + Sbjct: 423 AWLEQNGYHAEKVQPVDLFPRTKHCEVVSCYTK 455 >gi|266624563|ref|ZP_06117498.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium hathewayi DSM 13479] gi|288863579|gb|EFC95877.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium hathewayi DSM 13479] Length = 463 Score = 245 bits (625), Expect = 1e-62, Method: Composition-based stats. Identities = 87/396 (21%), Positives = 154/396 (38%), Gaps = 59/396 (14%) Query: 2 SGTLL-IDQYEQQLAEKVDRLRQMMLAFQVP-NLQ-IFRSE-PIHYRMRAEFHIWHD--G 55 G + YE+QL K ++R ++ + + I S P YR + EF + Sbjct: 86 GGCIYQTIPYEKQLEIKEKQVRSLLDSVCASYEFEGILASPQPCGYRNKMEFSFGDEFKD 145 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMAT---------------IRLEPLL 100 + M + + + ++N+ E++ ++ L Sbjct: 146 GPMALGMHRRGSFYDVVTTT---DCQIVNSDFCEILKASKDYFEELGLGFYKKMQHTGYL 202 Query: 101 RAKLFQ---------IDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQL 151 R L + +D +T+ ++ + RLL R+ LH + Sbjct: 203 RHLLVRRAVKTGEILVDLVTTSQEEPDLMPFAERLLSLP---LNGRIVGILHTWNDSLSD 259 Query: 152 IGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG 211 + +KT I +DY E L L +R SF Q N+ + E + + Sbjct: 260 AVKNDKTDILYGQDYFYEELL----GLKFRISPFSFFQTNSLGAEVLYEKARSYVGDTKD 315 Query: 212 DLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270 ++ +LY G G + ++A +V+ VEI + +VEAA+ N N + N + + Sbjct: 316 MVVFDLYSGTGTIAQMIAPVAKKVVGVEIVEEAVEAAKENAKMNGLENCEFIAGDV---- 371 Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSL 328 LK ID + I +DPPR G+ +G + Y I+YISC P SL Sbjct: 372 -----------LKVIDEIEEKPDLIILDPPRDGIHPKALGKIIDYGVNRIVYISCKPTSL 420 Query: 329 CRDLSILST-THTIERLALFDQFPYTRHMECGVLLV 363 RDL++ + +E++ D FP T ++E + Sbjct: 421 VRDLAVFQERGYRVEKVCAVDMFPSTGNVEVCCRMS 456 >gi|149374703|ref|ZP_01892477.1| RNA methyltransferase, TrmA family protein [Marinobacter algicola DG893] gi|149361406|gb|EDM49856.1| RNA methyltransferase, TrmA family protein [Marinobacter algicola DG893] Length = 429 Score = 245 bits (625), Expect = 1e-62, Method: Composition-based stats. Identities = 84/375 (22%), Positives = 144/375 (38%), Gaps = 30/375 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWH--DG 55 +L + Q+ K D LR+ F + RS + YR +A + + Sbjct: 70 GCSLQHMSGDAQIRFKEDTLREHFAHFGGIEPEEWVAPMRSPALGYRRKARLGVKYVPAR 129 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115 + + +++ ID + I + + + R ++ Q++ Sbjct: 130 ESVLVGFREKRNSFLTDIDRCVVLDPRIGDRITPLRELLHDMDAYR-RIPQVEVACGDES 188 Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVA- 174 A++ R +D L A + I L + T + + +ERL+ Sbjct: 189 AAMI----FRNMDPLSDSDTQALIGFGQAHELHIYLQPKGPDTVHRIWPESGEERLSYGM 244 Query: 175 -GRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFD 232 L + FTQ N IN +M+ + G+ +L+L+CG GNF+L LAR Sbjct: 245 EEFDLTMKFHPMDFTQVNVDINRNMVHRAVEWLDIQPGERVLDLFCGLGNFTLPLARRAG 304 Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNRLKDIDIHSYR 291 +V+ VE V R N N ++NV +FT + Sbjct: 305 QVVGVEGDDAMVVRGRENAELNGLSNVAFHGADLHADFTAQ-------------PWAAEG 351 Query: 292 FKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQ 349 F I +DPPRSG + + I+Y+SCNP +L RD ++ + + R + D Sbjct: 352 FDKILIDPPRSGAQEVCEYLTAFGAKRIVYVSCNPATLARDAGVMVRNGYRLVRAGVMDM 411 Query: 350 FPYTRHMECGVLLVR 364 FP+T H+E + R Sbjct: 412 FPHTTHVESMAMFER 426 >gi|329767656|ref|ZP_08259176.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Gemella haemolysans M341] gi|328839083|gb|EGF88669.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Gemella haemolysans M341] Length = 451 Score = 245 bits (625), Expect = 1e-62, Method: Composition-based stats. Identities = 73/383 (19%), Positives = 146/383 (38%), Gaps = 38/383 (9%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQ-VPNLQ------IFRSEPIHYRMRAEFHIWHDGDD 57 L YE+QL K L + +P + + YR + +F + Sbjct: 85 LAHVSYEKQLEYKRTILLDAFDKYYRLPKPDKLVLKTLASPKVEGYRNKNQFPLAVRNGR 144 Query: 58 LYHIMFDQQTKERMRIDYFMPGSL---LINALMIEMMATIRLEPLLRAKLFQIDYLTSQS 114 + ++ + + + + I+ + I L +++ ++E K + + Y+ +++ Sbjct: 145 VIAGLYKEGSNDLVEINEDLALHENGNKITNLAKKLLGKYKVEISTNKKNYGVKYIATRT 204 Query: 115 ----DQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIG------RANKTKICLDR 164 VT + + + L+ + + + ++ Sbjct: 205 SFYNGDVQVTFVANTNKIKNMDKVVNELKRERIVKSIILNITNDKDHLVMGTESLTLYGS 264 Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNF 223 DY+ E++ + Y SF Q N + + V+ + D+ L+ +CG G Sbjct: 265 DYIVEKIG----EIKYELSAKSFFQLNPPATKKLYDKVVEFAALKETDVVLDAFCGVGTI 320 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 ++R+ V V+I +++ A N+ N++ N V + + ++ Sbjct: 321 GQYVSRNCKEVYGVDIIPAAIKDANDNVKLNNLTNCTYVAGDANKIVPRWKK-------- 372 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSILSTTHTIE 342 F VDPPR GL ++ I+Y+SCNP +L RDL +L+ + I Sbjct: 373 ----KGINFDVAIVDPPRVGLGPLAKNLLAVDAKKIVYVSCNPSTLARDLKVLTRKYRIR 428 Query: 343 RLALFDQFPYTRHMECGVLLVRK 365 R+ D FP T +E V L+RK Sbjct: 429 RIQPVDMFPGTAAVEAVVELIRK 451 >gi|39996847|ref|NP_952798.1| RNA methyltransferase [Geobacter sulfurreducens PCA] gi|51316710|sp|Q74CC6|Y1748_GEOSL RecName: Full=Uncharacterized RNA methyltransferase GSU1748 gi|39983735|gb|AAR35125.1| RNA methyltransferase, TrmA family [Geobacter sulfurreducens PCA] gi|307634915|gb|ADI84585.2| RNA methyltransferase, TrmA family [Geobacter sulfurreducens KN400] Length = 438 Score = 244 bits (624), Expect = 1e-62, Method: Composition-based stats. Identities = 95/377 (25%), Positives = 153/377 (40%), Gaps = 29/377 (7%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRS-----EPIHYRMRAEFHIWHDGD 56 + +Y+ Q K + F P YR RA+F I G Sbjct: 76 GCSWQHLRYDAQAEAKERIFVDTLWRFGRVERDAVAPFAVADNPFGYRCRAQFKIRWSGG 135 Query: 57 DLYHIMFDQQTKERMRID-YFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115 L+ + + + + + IN L + + + + K+ QID T + Sbjct: 136 RLHMGFYRRGSHYVIDAPAECVICDPAIN-LTLRDLRLVLPDFSEPDKIPQIDAATGEDG 194 Query: 116 QAIVTLIYHRLLDDAWR--ECAIRLRDALHARKYQIQLIGRANKTKICLDRD---YVDER 170 V L+ H + D+ R + ++ L + GR + D Y Sbjct: 195 --HVLLVVHYIGDNPGRAADFFRSIQPHLASVTGIHLQCGRKDSIMHVWGVDSLSYTVPG 252 Query: 171 LTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNFSLVLAR 229 L GR L F+Q N N ++ L A G +L+L+CGNGNFSL LA Sbjct: 253 LGDQGRPLSLSFRRGGFSQVNYRQNRVLVSKALHLAGVGPGRRVLDLFCGNGNFSLPLAS 312 Query: 230 HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHS 289 +++ VE PS++ AR N N + +V+ + + + + T+ +R E Sbjct: 313 GGAQLVGVEDYGPSIDDARKNADFNGIGDVEFIAIDAADGTRRLRAAGE----------- 361 Query: 290 YRFKTIFVDPPRSGLDDATVG-MVQAYPHILYISCNPDSLCRDLSIL-STTHTIERLALF 347 F T+ +DPPR+G DA + A I+Y+SC+P +L RDL +L + + Sbjct: 362 -HFDTVILDPPRTGARDAVGEVAILAPERIVYVSCDPPTLGRDLGVLRKAGYRVVGSHGV 420 Query: 348 DQFPYTRHMECGVLLVR 364 D FP T H+E LL+R Sbjct: 421 DMFPQTYHIESVTLLIR 437 >gi|209920234|ref|YP_002294318.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia coli SE11] gi|209913493|dbj|BAG78567.1| putative RNA methyltransferase [Escherichia coli SE11] Length = 433 Score = 244 bits (624), Expect = 1e-62, Method: Composition-based stats. Identities = 84/368 (22%), Positives = 143/368 (38%), Gaps = 30/368 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWH--DGDDLY 59 + Q K L ++M + ++ P YR RA + + L Sbjct: 89 GCQQQHASVDLQQRSKSAALARLM---KHEVSEVIADVPWGYRRRARLSLNYLPKTQQLQ 145 Query: 60 HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119 + + + + + AL+ ++ A + ++R L ++ + + S ++ Sbjct: 146 MGFRKAGSSDIVDVKQCPILVPKLEALLPKVRACLGSLQVMRH-LGHVELVQATSGTLMI 204 Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179 L + L A RE R H+ + L + + E L Sbjct: 205 -LRHTAPLSSADREKLERFS---HSEGLDLYLAPDSEILETVSG-----EMPWYDSNGLR 255 Query: 180 YRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVE 238 F Q NAG+N M+ L + +L+L+CG GNF+L LA+ V+ VE Sbjct: 256 LTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLAKQAASVVGVE 315 Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298 VE + N N + NV + +E + F + +D Sbjct: 316 GVPALVEKGQQNARLNGLQNVTFYHENLEE------------DVTKQPWAKNGFDKVLLD 363 Query: 299 PPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHM 356 P R+G +++ P I+Y+SCNP +L RD ++L +TI RLA+ D FP+T H+ Sbjct: 364 PARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHL 423 Query: 357 ECGVLLVR 364 E VL R Sbjct: 424 ESMVLFSR 431 >gi|269101852|ref|ZP_06154549.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Photobacterium damselae subsp. damselae CIP 102761] gi|268161750|gb|EEZ40246.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Photobacterium damselae subsp. damselae CIP 102761] Length = 441 Score = 244 bits (624), Expect = 1e-62, Method: Composition-based stats. Identities = 89/376 (23%), Positives = 164/376 (43%), Gaps = 35/376 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEP-----IHYRMRAEFHIWHDGD 56 L ++ Q+ K L ++M F + I +++P HYR A F I D Sbjct: 90 GCNLQHLSHQGQVTAKQQSLTELMTKFAGADQAITQAKPIVGPDTHYRRCARFGIRLDNR 149 Query: 57 DLYHIMFDQ-QTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115 F + Q+KE + + M + +N L+ + + + L ++ + ++D Sbjct: 150 GQLQFGFRKKQSKEIVDVPQCMVLAQSLNELLPVLRELLNSLKGRKH-LGHVELV--EAD 206 Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANK-TKICLDRDYVDERLTVA 174 V +I H L +L + +++ + + A+ +I DR Y + + Sbjct: 207 NGRVVMIRH--LQPFSDADMSKLLEFAKSQQIMLFMAPTADSIEQIFGDRPYYE----LD 260 Query: 175 GRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDR 233 + L + F Q N +N+ M++ + D +L+L+CG GNFSL LA+ + Sbjct: 261 CQKLYF--SPKDFIQVNRDVNIAMVKQAIDWLDVQADDRVLDLFCGLGNFSLPLAKRANT 318 Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK-EFTQAMRREREFNRLKDIDIHSYRF 292 ++ VE V A+ N N +NN + + + + T+ ++ FN+ Sbjct: 319 LVGVEGVDEMVHRAQDNAQYNQINNAAFFQANLEQDVTEFSWAKKPFNK----------- 367 Query: 293 KTIFVDPPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDLS-ILSTTHTIERLALFDQF 350 I +DP R+G +V+ P ++Y+SCNP +L RD +L + + +L + D F Sbjct: 368 --ILLDPARAGAAGVMEHVVKLAPEKVVYVSCNPATLARDSQILLHKGYQLTQLGMMDMF 425 Query: 351 PYTRHMECGVLLVRKP 366 P+T H+E L VR Sbjct: 426 PHTGHLESMALFVRSK 441 >gi|218555336|ref|YP_002388249.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia coli IAI1] gi|218696384|ref|YP_002404051.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia coli 55989] gi|300815798|ref|ZP_07096022.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS 107-1] gi|218353116|emb|CAU98943.1| 23S rRNA (uracil-5)-methyltransferase [Escherichia coli 55989] gi|218362104|emb|CAQ99713.1| 23S rRNA (uracil-5)-methyltransferase [Escherichia coli IAI1] gi|300531727|gb|EFK52789.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS 107-1] gi|323946492|gb|EGB42518.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli H120] gi|324016362|gb|EGB85581.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS 117-3] Length = 433 Score = 244 bits (623), Expect = 1e-62, Method: Composition-based stats. Identities = 84/368 (22%), Positives = 143/368 (38%), Gaps = 30/368 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWH--DGDDLY 59 + Q K L ++M + ++ P YR RA + + L Sbjct: 89 GCQQQHASVDLQQRSKSAALARLM---KHEVSEVIADVPWGYRRRARLSLNYLPKTQQLQ 145 Query: 60 HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119 + + + + + AL+ ++ A + ++R L ++ + + S ++ Sbjct: 146 MGFRKAGSSDIVDVKQCPILVPKLEALLPKVRACLGSLQVMRH-LGHVELVQATSGTLMI 204 Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179 L + L A RE R H+ + L + + E L Sbjct: 205 -LRHTAPLSSADREKLERFS---HSEGLDLYLAPDSEILETVSG-----EMPWYDSNGLR 255 Query: 180 YRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVE 238 F Q NAG+N M+ L + +L+L+CG GNF+L LA+ V+ VE Sbjct: 256 LTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLAKQAASVVGVE 315 Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298 VE + N N + NV + +E + F + +D Sbjct: 316 GVPALVEKGQQNARLNGLQNVTFYHENLEE------------DVTKQPWAKNGFDKVLLD 363 Query: 299 PPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHM 356 P R+G +++ P I+Y+SCNP +L RD ++L +TI RLA+ D FP+T H+ Sbjct: 364 PARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHL 423 Query: 357 ECGVLLVR 364 E VL R Sbjct: 424 ESMVLFSR 431 >gi|260590015|ref|ZP_05855928.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Blautia hansenii DSM 20583] gi|260539527|gb|EEX20096.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Blautia hansenii DSM 20583] Length = 462 Score = 244 bits (623), Expect = 1e-62, Method: Composition-based stats. Identities = 86/407 (21%), Positives = 150/407 (36%), Gaps = 66/407 (16%) Query: 2 SGTLL-IDQYEQQLAEKVDRLRQMMLAF----------QVPNLQI----FRSEPIHYRMR 46 G + YE+QL K ++++++ P+ + YR + Sbjct: 79 GGCMYQTMSYEEQLNMKAAQVKKLIDEAVIRGGQVDTEGKPDYIFEGIKGSPQEFAYRNK 138 Query: 47 AEFHIW------------HDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIE---MM 91 EF H Y ++ K + D + ++ E Sbjct: 139 MEFSFGDKYKDGPLSLGLHKKGSTYDVLNACDCK-LVHEDMTKILTCILEYCREEGFSYY 197 Query: 92 ATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRL---------RDAL 142 ++ LR L + T + +V L+ ++ + E RL L Sbjct: 198 HKMQHTGFLRHLLLRRGNTTG---EILVNLVTTSEIETDFAELQKRLLALPLEGKIVGFL 254 Query: 143 HARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWV 202 H + + R+++T+I +DY E + L ++ SF QPN+ + + Sbjct: 255 HIINNSLSDVVRSDETRILYGQDYFYEEIL----GLKFKITPFSFFQPNSYGAEVLYKTA 310 Query: 203 LAATKGIQG-DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261 + + +LY G G S ++A V+ VEI + +V+AA N N + N + Sbjct: 311 REYIGDTKEMTVFDLYSGTGTISQIMASVAKEVIGVEIVEEAVKAAGENAHLNGIENCRF 370 Query: 262 VRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHIL 319 + LK +D + I +DPPR G+ + + ++ Sbjct: 371 IAGDV---------------LKVLDDIQEKPDFIILDPPRDGIHPKALPKIIDYGVDKLV 415 Query: 320 YISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 YISC P SL RDL L + +E++ DQF T H+E LL RK Sbjct: 416 YISCKPTSLARDLEMFLGRGYQVEKVCCVDQFCQTVHVETVCLLQRK 462 >gi|74313357|ref|YP_311776.1| 23S rRNA 5-methyluridine methyltransferase [Shigella sonnei Ss046] gi|91207813|sp|Q3YY71|RUMA_SHISS RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|73856834|gb|AAZ89541.1| putative enzyme [Shigella sonnei Ss046] gi|323167875|gb|EFZ53566.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Shigella sonnei 53G] Length = 433 Score = 244 bits (623), Expect = 2e-62, Method: Composition-based stats. Identities = 85/368 (23%), Positives = 143/368 (38%), Gaps = 30/368 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWH--DGDDLY 59 + Q K L ++M + ++ P YR RA + + L Sbjct: 89 GCQQQHASVDLQQRSKSAALARLM---KHEVSEVIADVPWGYRRRARLSLNYLPKTQQLQ 145 Query: 60 HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119 + + + + + AL+ ++MA + ++R L ++ + + S ++ Sbjct: 146 MGFRKAGSSDIVDVKQCPILVPQLEALLPKVMACLGSLQVMRH-LGHVELVQATSGTLMI 204 Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179 L + L A RE R H+ + L + + E L Sbjct: 205 -LRHTAPLSSADREKLERFS---HSEGLDLYLAPDSEILETVSG-----EMPWYDSNGLR 255 Query: 180 YRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVE 238 F Q NAG+N M+ L + +L+L+CG GNF+L LA V+ VE Sbjct: 256 LTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVE 315 Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298 VE + N N + NV + +E + F + +D Sbjct: 316 GVPALVEKGQQNARLNGLQNVTFYHENLEE------------DVTKQPWAKNGFDKVLLD 363 Query: 299 PPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHM 356 P R+G +++ P I+Y+SCNP +L RD ++L +TI RLA+ D FP+T H+ Sbjct: 364 PARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHL 423 Query: 357 ECGVLLVR 364 E VL R Sbjct: 424 ESMVLFSR 431 >gi|325478688|gb|EGC81799.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Anaerococcus prevotii ACS-065-V-Col13] Length = 415 Score = 244 bits (623), Expect = 2e-62, Method: Composition-based stats. Identities = 87/371 (23%), Positives = 165/371 (44%), Gaps = 38/371 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLA---FQVPNLQIFRSEPIHYRMRAEFHIWHDGDDL 58 T++ YE QL K + ++ + + +++I SE + YR + + + G Sbjct: 76 GCTIMDTNYETQLKLKENLIKNALKKTCGINLEHIEILPSEKLGYRNKIKVQVDEKGRLA 135 Query: 59 YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAI 118 Y+ + + + + ID + + I + + E + + +I ++ +SD Sbjct: 136 YN---KKSSNDLVAIDDCLLANNHIRENLPNIRK--LTEDITKNLGKKIREISIRSDGEE 190 Query: 119 VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKI-CLDRDYVDERLTVAGRT 177 + L + ++ + L++ + Y I LI N KI + DY L + Sbjct: 191 ILLNIYTNDEE---KLYNYLKEEYPNQVYNINLI---NGRKIMTIGNDY----LNFKLKD 240 Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAV 237 I++ ++ F Q N ++ LL+L+CG+G S+ L + D ++ + Sbjct: 241 KIFKVSKDDFYQVNDYQIENLYASA-RKYLEKDKKLLDLFCGSGISSIAL--NDDHIVGI 297 Query: 238 EIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFV 297 EI K ++E A+ N AN++ + K + ++K Q I + K + V Sbjct: 298 EINKSAIEDAKQNALANNLKDYKFISKNAKYIDQKF-------------IKKEKIKAVTV 344 Query: 298 DPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTR 354 DPPR+GLD + + +I+YISCNP +L RD+ + + +E++ D FP T Sbjct: 345 DPPRAGLDKEIIKTLTKTKIENIIYISCNPQTLARDIKRFMDRGYKLEKIKAVDMFPQTM 404 Query: 355 HMECGVLLVRK 365 H+E VL+ RK Sbjct: 405 HVETVVLMSRK 415 >gi|295094140|emb|CBK83231.1| 23S rRNA m(5)U-1939 methyltransferase [Coprococcus sp. ART55/1] Length = 550 Score = 244 bits (623), Expect = 2e-62, Method: Composition-based stats. Identities = 84/399 (21%), Positives = 153/399 (38%), Gaps = 58/399 (14%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAF-----QVPNLQIFRSEP--IHYRMRAEFHI--- 51 + YE QL K + ++ ++ Q + P YR + EF Sbjct: 80 GCSYQTLSYENQLKVKEELVKGLLDGVIDSAEHPYEWQGILASPVTKGYRNKMEFSFGDE 139 Query: 52 WHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMI-----------EMMATIRLEPLL 100 + DG + T + +++D + +N ++ ++ LL Sbjct: 140 YKDGPLALGLHKKNSTYDIVQMDDCYIVNDDLNKIVKYTVEFCRAAGLPYYKKMQHTGLL 199 Query: 101 RAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAI-----------RLRDALHARKYQI 149 R + + ++ + +V L+ DA A ++ LH + Sbjct: 200 RHLVIR---RSATNGDLLVNLVTSTQNLDALDLDAFVRGLLDLPLEGKIAGILHTENDSM 256 Query: 150 QLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGI 209 +++T + +Y+ E + L ++ SF Q N + + + Sbjct: 257 ADAVISDRTNLLYGTEYIYETVL----GLQFKISPFSFFQTNTKSAERLYDKARSYVGDT 312 Query: 210 QGDLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268 + ++ +LY G G + +LA +V+ VEI + +VEAAR N N ++N + + Sbjct: 313 KDAVIFDLYSGTGTIAQLLAPVAKKVIGVEIVEEAVEAARVNAELNGLDNCEFIAGDV-- 370 Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPD 326 LK ID + I +DPPR G++ + + Y ++YISC P Sbjct: 371 -------------LKVIDEIEEKPDFIVLDPPRDGINPKALTKIINYGVNELVYISCKPT 417 Query: 327 SLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364 SL RDL L + + + DQFP T H+E VLL + Sbjct: 418 SLARDLVTLQENGYYVTKACAVDQFPGTVHVETVVLLSK 456 >gi|37681006|ref|NP_935615.1| 23S rRNA 5-methyluridine methyltransferase [Vibrio vulnificus YJ016] gi|37199756|dbj|BAC95586.1| SAM-dependent methyltransferase [Vibrio vulnificus YJ016] Length = 440 Score = 244 bits (623), Expect = 2e-62, Method: Composition-based stats. Identities = 87/374 (23%), Positives = 144/374 (38%), Gaps = 36/374 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEP-----IHYRMRAEFHIWHDGD 56 + Y+ QLA K L Q+M F +I S P YR RA + D Sbjct: 92 GCDMQHMDYQAQLAYKQRTLLQLMKKFSGS--EILLSPPVTGLEKAYRRRARVSLMWD-K 148 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRA--KLFQIDYLTSQS 114 + F + K+ +I+ +L+ L + + L ++ + + + Sbjct: 149 KSRQLQFGFRRKQSKQIENVTQCPVLVAELECLLPELKAILSHFHHPEHLGHVELVAADN 208 Query: 115 DQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANK-TKICLDRDYVDERLTV 173 I LLD E +LR + + L+ +++ +I + Y E Sbjct: 209 GAVITLRHTGPLLD----EDVAKLRQCAEQHQATLYLMPASDQLERISGEAPYYQEI--- 261 Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFD 232 N+F Q N +N M+ L D +L+L+CG GNFSL +A Sbjct: 262 ---GFKVPFEPNNFIQVNQKVNQQMVVQALEWLDPQSSDRVLDLFCGLGNFSLPIASKAK 318 Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292 V VE V+ A N + N +NN + + ++ S +F Sbjct: 319 SVTGVEGVDDMVQKAALNASLNQINNAQFFHANLEQ------------DFVGQPWASEKF 366 Query: 293 KTIFVDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDL-SILSTTHTIERLALFDQF 350 I +DP R+G + ++Y+SCNP +L RD S+L + + +L + D F Sbjct: 367 DKILLDPARAGASGIIEQVSALGAKRVVYVSCNPATLARDSQSLLEQGYRLTKLGMLDMF 426 Query: 351 PYTRHMECGVLLVR 364 PYT H+E L + Sbjct: 427 PYTSHLESMALFEK 440 >gi|56963072|ref|YP_174799.1| S-adenosylmethionine (SAM)-dependent methyltransferase [Bacillus clausii KSM-K16] gi|56909311|dbj|BAD63838.1| S-adenosylmethionine (SAM)-dependent methyltransferase [Bacillus clausii KSM-K16] Length = 471 Score = 244 bits (622), Expect = 2e-62, Method: Composition-based stats. Identities = 77/392 (19%), Positives = 144/392 (36%), Gaps = 45/392 (11%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL-------QIFRSEPIHYRMRAEFHIWHD 54 L YE L K D +RQ + + I P +YR +++ Sbjct: 97 GCQLQHMNYEATLEGKKDIVRQAFVRYTNVPESTLPLKNTIGMDNPWYYRNKSQLQTRKQ 156 Query: 55 GDDLYH-IMFDQQTKERMRIDYFMPGSLLINA-----------LMIEMMATIRLEPLLRA 102 D ++ + + + + + M +N L I + +R Sbjct: 157 KDGRVAAGLYRENSHDLIDLSACMVQHKQLNRVAQIVKQLLGDLQIPIYNEKTHSGDIRT 216 Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162 + +I + T Q +T + ++R+ L +Q + KT + Sbjct: 217 IVTRIGFETKQIQLVFITRTEALPKKEL---LIKQVREKLPEVTSVMQNVNH-EKTSLIF 272 Query: 163 DRD----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELY 217 Y ++ + + +F Q N V + E AA + L++ Y Sbjct: 273 GEKMVHLYGEKTIHERLGEYSFDLSARAFFQLNPSQTVKLYNEAKKAAHLTGKEKLVDAY 332 Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277 CG G L + V ++I + ++E AR N + + V ++++ + Sbjct: 333 CGVGTIGQWLGDQAEEVRGMDITEEAIENARSNAKKHGIAAV-YEVGPAEKWLPLWLK-- 389 Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCRDLSIL 335 ++ I VDPPRSG D + M++A P I+Y+SCNP +L +D+ L Sbjct: 390 ----------QGFKPDVILVDPPRSGCDRQLLKSMLKAKPKRIVYVSCNPSTLAKDVQHL 439 Query: 336 --STTHTIERLALFDQFPYTRHMECGVLLVRK 365 + + I+ + D FP+T +E L+ K Sbjct: 440 IEAGGYAIQSIQPVDMFPWTAQVESVTELILK 471 >gi|254230529|ref|ZP_04923900.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio sp. Ex25] gi|262393276|ref|YP_003285130.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Vibrio sp. Ex25] gi|151936954|gb|EDN55841.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio sp. Ex25] gi|262336870|gb|ACY50665.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Vibrio sp. Ex25] Length = 439 Score = 244 bits (622), Expect = 2e-62, Method: Composition-based stats. Identities = 82/371 (22%), Positives = 154/371 (41%), Gaps = 30/371 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI---FRSEPIHYRMRAEFHIWHDGD-- 56 L Y+QQL K LRQ+M F ++++ + + YR RA ++ D Sbjct: 90 GCDLQHLDYDQQLTYKQQTLRQLMRKFSGNDIELDAPLLGDSLAYRRRARVSLFVDKKTR 149 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116 L+ +Q+K+ ++ + +N L+ E+ + ++ +L ++ + + Sbjct: 150 QLHFGFRKKQSKQIAQVTDCPVLAPELNVLLPEIYSALKAFKK-PEQLGHVELVLGDNGP 208 Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGR 176 I TL + L L HA + L+ ++ + + + V Sbjct: 209 CI-TLRHLSALTTVETNALTELAKRHHA---SLYLMPATDQLNLVEGDMPFYQEVGVKIP 264 Query: 177 TLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVL 235 N+F Q N +N M++ + + D +L+L+CG GNFSL +A+ V+ Sbjct: 265 -----FAPNNFIQVNQAVNKKMVKQAVEWLDPQKSDRVLDLFCGVGNFSLPIAKLAKHVV 319 Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295 VE VE A N + N +NN + + ++ + + RF + Sbjct: 320 GVEGVAEMVEKATNNASLNQINNAQFYHANLEQ------------DFEGQVWAAERFDKV 367 Query: 296 FVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYT 353 +DP R+G + + ++Y+SCNP +L RD L + + +L + D FP+T Sbjct: 368 LLDPARAGASGIIDQVSELGAQRVVYVSCNPATLARDSQSLMEQGYKLTKLGMLDMFPHT 427 Query: 354 RHMECGVLLVR 364 H+E L + Sbjct: 428 SHLESMALFEK 438 >gi|288928551|ref|ZP_06422398.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella sp. oral taxon 317 str. F0108] gi|288331385|gb|EFC69969.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella sp. oral taxon 317 str. F0108] Length = 479 Score = 244 bits (622), Expect = 2e-62, Method: Composition-based stats. Identities = 82/398 (20%), Positives = 147/398 (36%), Gaps = 57/398 (14%) Query: 9 QYEQQLAEKVDRLRQMMLAF---QVPNLQIFRSE--PIHYRMRAEFHIWHDG-------- 55 YE+QL K ++ + Q+P +HYR + EF + Sbjct: 97 PYEEQLRAKQQQVYDQLSRISHVQLPTFHPIMGSQLTLHYRNKLEFGCSNKRWLTREQVA 156 Query: 56 -DDLYHIMFDQQTK------ERMRIDYFMPGSLLINALMIEMMATIRLEPL----LR--- 101 + + M + + I+ L N + E+ + LR Sbjct: 157 SGETFDTMNAIGFHITGAFDKILPIEKCWLMDDLQNQIRNEIRDYALAHNITFFDLRQQT 216 Query: 102 AKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTK-- 159 L + S + + +V + +H D ++ A L + R QI + + K Sbjct: 217 GLLRDVMIRNSDTGEWMVLVQFHFETADD-QQTADALLAHVAERFPQITSLLWVDNQKCN 275 Query: 160 ---------ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ 210 + D++ E + L ++ SF Q N H+ E Sbjct: 276 DTFGDLPVYVFKGNDHIFEVM----EDLRFKVGPKSFYQTNTQQAYHLYEVARRFANLSG 331 Query: 211 GDLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269 +++ +LY G G + +AR +V+ VE ++ A+ N N + N K+ Sbjct: 332 TEIVYDLYTGTGTIANFVARQAKKVVGVEYVPEAIADAKVNSELNGIGNTTFYAGDMKDI 391 Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDS 327 D ++ + I DPPR+G+ + +++A P I+Y+SCNP + Sbjct: 392 LND-----------DFIANNGQPDVIITDPPRAGMHADVIETIIRANPQRIVYVSCNPAT 440 Query: 328 LCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 RDL L + + + D FP+T H+E VLL R+ Sbjct: 441 QARDLIALDERYAVTAVQPVDMFPHTPHVENVVLLERR 478 >gi|78187968|ref|YP_376011.1| 23S rRNA methyltransferase [Chlorobium luteolum DSM 273] gi|78167870|gb|ABB24968.1| 23S rRNA m(5)U-1939 methyltransferase [Chlorobium luteolum DSM 273] Length = 476 Score = 244 bits (622), Expect = 2e-62, Method: Composition-based stats. Identities = 88/404 (21%), Positives = 146/404 (36%), Gaps = 55/404 (13%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMML---AFQVPNLQIFRSEPI--HYRMRAEFHI----- 51 L+ YE QL K ++R + F+ P L P HYR + EF Sbjct: 86 GCKLMHVSYEAQLRYKEKKVRDALAHLGGFEDPPLTPAHPAPSSVHYRNKIEFSCSSKRY 145 Query: 52 ---------WHDGDDLYHIMFDQQTK--ERMRIDYFMPGSLLINALMIEMMATIRLEPL- 99 + + F + + ID + +N ++ L L Sbjct: 146 LLHEEIAADRLQAPKNFALGFHAPGNFEKVIDIDRCFLATDGMNRVLNLTREFALLNTLA 205 Query: 100 ----------LRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRD-----ALHA 144 LR + + + IVT Y R L + +R + ++ Sbjct: 206 AYGAKEHTGFLRNLVVRYSEEREELMVNIVTSWYDRDLMERYRLHLESGMEGVRMTIVNN 265 Query: 145 RKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL- 203 + + I + ERL L +R NSF Q N + +L Sbjct: 266 VTSRPNTVAVGEHEYIVSGSGVITERLG----ELDFRISANSFFQTNTRQAEALYACILR 321 Query: 204 AATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVR 263 AA + + +LYCG G +L +ARH + +E+ + S++ AR N N + N + Sbjct: 322 AAGLKAEDTVYDLYCGTGTITLFMARHCRMAVGLEVVESSIQDARANAEFNSIRNAVFFQ 381 Query: 264 MSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYI 321 K+F + + R + DPPR+G+ + + I+Y+ Sbjct: 382 ADLKDFGTLLPTLDSYGR----------PDVVVTDPPRAGMHPKALQAMVQLEARRIIYV 431 Query: 322 SCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364 SCNP SL RD + + + +E + D FP+T H+E VR Sbjct: 432 SCNPASLGRDGKEIAAAGYRLESVEPVDMFPHTAHIESVACFVR 475 >gi|323693629|ref|ZP_08107829.1| RNA methyltransferase [Clostridium symbiosum WAL-14673] gi|323502320|gb|EGB18182.1| RNA methyltransferase [Clostridium symbiosum WAL-14673] Length = 461 Score = 244 bits (622), Expect = 2e-62, Method: Composition-based stats. Identities = 86/394 (21%), Positives = 155/394 (39%), Gaps = 52/394 (13%) Query: 2 SGTLL-IDQYEQQLAEKVDRLRQMMLAFQVP-NLQIFRSEPIH--YRMRAEFHIWHD--- 54 G L YE QL K +++++++ + + P+ YR + EF + Sbjct: 79 GGCLYQTIPYETQLEIKKEQVKELLDGVCEEYEFEGIKGSPLADCYRNKMEFSFGDEVKD 138 Query: 55 -----GDDLYHIMFDQQTKERMRIDYFMPGSLLIN------ALMIEMMATIRLEPLLRAK 103 G +D T RI + +L+ + ++ LR Sbjct: 139 GPLALGMHKRGSFYDVVTTGECRIVHKDFCDILLCTKAYFEEKEVGFYKKMQHTGYLRHL 198 Query: 104 LFQIDYLTSQSDQAIVTLIY-----HRLLDDAWRECAIRL------RDALHARKYQIQLI 152 L + T + ++T + L W E + L LH + + Sbjct: 199 LVRRAVKTGEILLDLITTTQIGVEEEKELLAGWLERLLALPLEGKMAGILHTKNDSLADA 258 Query: 153 GRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD 212 + T++ +DY E L L +R SF Q N+ + E +G Sbjct: 259 VKDEGTEVLYGKDYFFEELL----GLKFRISPFSFFQTNSLGAEVLYEKTREYVGETKGK 314 Query: 213 LL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271 ++ +LY G G + +LA ++V+ VEI K +VEAA+ N N ++N + + Sbjct: 315 VVFDLYSGTGTIAQILAPVAEKVVGVEIVKEAVEAAKENARLNGLDNCEFIAGDV----- 369 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLC 329 LK +D + + + I +DPPR G+ + + + ++Y+SC P SL Sbjct: 370 ----------LKVVDELTDKPELIVLDPPRDGIHPKAIEKIIGFGVERMVYVSCKPTSLA 419 Query: 330 RDLSILST-THTIERLALFDQFPYTRHMECGVLL 362 RDL IL + +E+ D FP T ++E +++ Sbjct: 420 RDLVILQENGYRVEKGCCVDMFPGTANVEVVIMM 453 >gi|212693125|ref|ZP_03301253.1| hypothetical protein BACDOR_02632 [Bacteroides dorei DSM 17855] gi|212664230|gb|EEB24802.1| hypothetical protein BACDOR_02632 [Bacteroides dorei DSM 17855] Length = 473 Score = 244 bits (622), Expect = 2e-62, Method: Composition-based stats. Identities = 81/404 (20%), Positives = 155/404 (38%), Gaps = 62/404 (15%) Query: 4 TLLIDQYEQQLAEKVDRLRQMML---AFQVPNLQIFRSEPIH--YRMRAEFH-------- 50 L Y +Q+ K ++ + ++P + YR + EF Sbjct: 89 CLP---YTEQIKYKQKQVTDNLTRIGKIELPEISPIMGSEKTEFYRNKLEFTFSNKRWLT 145 Query: 51 -------IWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL---- 99 + +D + + + ID + N + + Sbjct: 146 EEEVKEDVKYDQMNAVGFHIPGAFDKVLAIDKCWLQDDISNQIRNAIRDYAYEHNYSFFN 205 Query: 100 LRAK---LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQ-----L 151 LR++ L + TS + + +V L+ +++++ + RL + R QI + Sbjct: 206 LRSQEGMLRNLMIRTSSTGELMV-LLQCKIVEEGELDLMKRLLTFVAERFPQITSLLYVV 264 Query: 152 IGRANKT------KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA 205 + N T + D++ E + L ++ SF Q N+G + L V Sbjct: 265 NNKCNDTINDLDVMVFKGNDHIFEEM----EGLRFKIGAKSFYQTNSGQAYN-LYKVARN 319 Query: 206 TKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVR 263 G+ G+ + +LY G G + ++R +V+ +E ++E A+ N A N ++N Sbjct: 320 FAGLTGNELVYDLYTGTGTIANFVSRQAKKVIGIEYVPEAIEDAKVNSAINGIDNTLFYA 379 Query: 264 MSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYI 321 K+ ++ R I DPPR+G+ D + + I+Y+ Sbjct: 380 GDMKDILT-----------QEFISQHGRPDVIITDPPRAGMHDDVINTILFAEPQRIVYV 428 Query: 322 SCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 SCNP + RDLS+L + + + D FP+T H+E VLL ++ Sbjct: 429 SCNPATQARDLSLLDAKYKVMAVQPVDMFPHTHHVENVVLLEKR 472 >gi|258622336|ref|ZP_05717361.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio mimicus VM573] gi|258585352|gb|EEW10076.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio mimicus VM573] Length = 440 Score = 244 bits (622), Expect = 2e-62, Method: Composition-based stats. Identities = 89/373 (23%), Positives = 153/373 (41%), Gaps = 32/373 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI---FRSEPIHYRMRAEFHIWHDGD-- 56 L Q+ K L Q+M+ F +L + S+ YR RA + D Sbjct: 90 GCDLQHLDRTGQINHKQQALSQLMVKFAGQSLALSVPVCSDDQGYRRRARLSLMWDKKTQ 149 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116 L +Q+K + + + +NAL+ E+ A + + L ++ + + Q Sbjct: 150 QLQFGFRRKQSKAIVSVTHCPVLEPSLNALLPELNALLS-QWSQPELLGHVELVKGDNTQ 208 Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR-DYVDERLTVAG 175 +V R L + L D + + L A + + Y +E Sbjct: 209 VLVL----RHLGVLAEQDQQSLSDFATQKGLTLYLTLEAGELQHVQGEAPYCEET----- 259 Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRV 234 + N F Q N +N M+E L Q +L+L+CG GNF+L LA+ V Sbjct: 260 -GSRLSFLPNHFIQVNRAVNQQMVEQALNWLEVNKQDRVLDLFCGLGNFTLPLAKQAQDV 318 Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294 + VE + V+ A +N N +NNV + + ++ + + +F Sbjct: 319 VGVEGVEEMVQHATHNAKLNQINNVAFYQANLEQ------------DMTNASWAQQKFAK 366 Query: 295 IFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPY 352 + +DP R+G + + ++Y+SCNP +L RD S+LS +E+L + D FP+ Sbjct: 367 VLLDPARAGAEGIVDQLAALGAERVVYVSCNPATLARDSQSLLSQGFRLEKLGMLDMFPH 426 Query: 353 TRHMECGVLLVRK 365 T H+E L V+K Sbjct: 427 TSHLESMALFVKK 439 >gi|293416032|ref|ZP_06658672.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli B185] gi|291432221|gb|EFF05203.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli B185] Length = 433 Score = 244 bits (622), Expect = 2e-62, Method: Composition-based stats. Identities = 85/368 (23%), Positives = 141/368 (38%), Gaps = 30/368 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWH--DGDDLY 59 + Q K L ++M + ++ P YR RA + + L Sbjct: 89 GCQQQHASVDLQQRSKSAALARLM---KHEVSEVIADVPWGYRRRARLSLNYLPKTQQLQ 145 Query: 60 HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119 + E + + + AL+ ++ A + +R L ++ + + S ++ Sbjct: 146 MGFRKAGSSEIVDVKQCPILVPQLEALLPKVRACLGSLQAMRH-LGHVELVQATSGTLMI 204 Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179 L + L A RE R H+ + L + + E L Sbjct: 205 -LRHTAPLSSADREKLERFS---HSEGLDLYLAPDSEILETVSG-----EMPWYDSNGLR 255 Query: 180 YRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVE 238 F Q NAG+N M+ L + +L+L+CG GNF+L LA V+ VE Sbjct: 256 LTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVE 315 Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298 VE + N N + NV + +E + F + +D Sbjct: 316 GVPALVEKGQQNARLNGLQNVTFYHENLEE------------DVTKQPWAKNGFDKVLLD 363 Query: 299 PPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHM 356 P R+G +++ P I+Y+SCNP +L RD ++L +TI RLA+ D FP+T H+ Sbjct: 364 PARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHL 423 Query: 357 ECGVLLVR 364 E VL R Sbjct: 424 ESMVLFSR 431 >gi|89896511|ref|YP_519998.1| hypothetical protein DSY3765 [Desulfitobacterium hafniense Y51] gi|89335959|dbj|BAE85554.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 446 Score = 244 bits (622), Expect = 2e-62, Method: Composition-based stats. Identities = 75/374 (20%), Positives = 143/374 (38%), Gaps = 40/374 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54 L Y Q L K + + L+ + EP YR +A H Sbjct: 94 GCQLQHLNYAQTLLWKKRWVEDALTRIGKIPLEKVKVHPTLGMDEPWRYRNKARL---HR 150 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLT-SQ 113 G+ + +++K + + S +N + E A + + + ++ LT + Sbjct: 151 GEGNTLGYYQEKSKATVPFTDCLLISESMNRWVREAEAILGQQD--KNLFPDLNALTFRE 208 Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTV 173 + Q LI L D + + +H+ + +I +++ ++ L Sbjct: 209 NSQGEGMLILDSLKDVRQADVWSEMGGGIHSV---WGINSSGEPERIAGQKEFTEDVLGA 265 Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLARHFD 232 ++ +F Q N + VL + + +LYCG G +L LA Sbjct: 266 -----RFKISPLAFLQVNPVQTRKLYNKVLDWAELSTEKVVWDLYCGIGTITLALAAKAK 320 Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292 +V +E +VE AR N N VNNV+ + +++ Q + Sbjct: 321 KVWGIEENPYAVEDARENAKRNRVNNVEFMVGKAEDTFQQI---------------GDSP 365 Query: 293 KTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCRDLSILS-TTHTIERLALFDQ 349 + +DPPR+G + +++ P I+Y+SC+ +L RDL IL + + + D Sbjct: 366 HIVVLDPPRAGAHRKVLEGLLELKPEQIIYVSCDAGTLARDLGILQNGGYRVVEVQPVDM 425 Query: 350 FPYTRHMECGVLLV 363 FP+T +E +++ Sbjct: 426 FPWTVSVESVIMMT 439 >gi|50401486|sp|Q7MHP7|RUMA_VIBVY RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase Length = 438 Score = 244 bits (622), Expect = 2e-62, Method: Composition-based stats. Identities = 87/374 (23%), Positives = 144/374 (38%), Gaps = 36/374 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEP-----IHYRMRAEFHIWHDGD 56 + Y+ QLA K L Q+M F +I S P YR RA + D Sbjct: 90 GCDMQHMDYQAQLAYKQRTLLQLMKKFSGS--EILLSPPVTGLEKAYRRRARVSLMWD-K 146 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRA--KLFQIDYLTSQS 114 + F + K+ +I+ +L+ L + + L ++ + + + Sbjct: 147 KSRQLQFGFRRKQSKQIENVTQCPVLVAELECLLPELKAILSHFHHPEHLGHVELVAADN 206 Query: 115 DQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANK-TKICLDRDYVDERLTV 173 I LLD E +LR + + L+ +++ +I + Y E Sbjct: 207 GAVITLRHTGPLLD----EDVAKLRQCAEQHQATLYLMPASDQLERISGEAPYYQEI--- 259 Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFD 232 N+F Q N +N M+ L D +L+L+CG GNFSL +A Sbjct: 260 ---GFKVPFEPNNFIQVNQKVNQQMVVQALEWLDPQSSDRVLDLFCGLGNFSLPIASKAK 316 Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292 V VE V+ A N + N +NN + + ++ S +F Sbjct: 317 SVTGVEGVDDMVQKAALNASLNQINNAQFFHANLEQ------------DFVGQPWASEKF 364 Query: 293 KTIFVDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDL-SILSTTHTIERLALFDQF 350 I +DP R+G + ++Y+SCNP +L RD S+L + + +L + D F Sbjct: 365 DKILLDPARAGASGIIEQVSALGAKRVVYVSCNPATLARDSQSLLEQGYRLTKLGMLDMF 424 Query: 351 PYTRHMECGVLLVR 364 PYT H+E L + Sbjct: 425 PYTSHLESMALFEK 438 >gi|281492836|ref|YP_003354816.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactococcus lactis subsp. lactis KF147] gi|281376488|gb|ADA65974.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactococcus lactis subsp. lactis KF147] Length = 513 Score = 244 bits (622), Expect = 2e-62, Method: Composition-based stats. Identities = 72/405 (17%), Positives = 139/405 (34%), Gaps = 55/405 (13%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNL-------QIFRSEPIHYRMRAEFHIWH-DGD 56 ++ Y QL K D +RQ + ++ + + YR + +F + + Sbjct: 85 IMHLSYPMQLEFKRDVMRQALEKYKPAGWRNYELRATLGMENTLGYRNKLQFQVRRLNDG 144 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----------LRAKLFQ 106 + ++ + T + +D + ++ + I L +R + + Sbjct: 145 TVIAGLYQEGTHHLVNLDNCLVQDPKTQEIINHICRLIEKFDLPVYDERKIGGIRTVMVR 204 Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWRECAI------------------RLRDALHARKYQ 148 T + VT L W E L + Sbjct: 205 RSQKTGEVQIIFVTSTPIILDGQVWPELREEPSKRQKNSFVKFDKMLSALTEEFEEIVTV 264 Query: 149 IQLIGRANKTKICLDRDYV----DERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVL 203 ++I +R + E +T + +F Q N+ + E V Sbjct: 265 AVNFHPRKTSEIYGERTQILFNEKETITEGVLDYEFELSPRAFYQLNSEQANVLYGEAVK 324 Query: 204 AATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVR 263 A +++ YCG G +A+ V ++I S+ AR N + N Sbjct: 325 ALNPKKDDRVIDAYCGVGTIGFAVAKKVKSVHGMDITPESIFDARENAKRLGLKNCHYEI 384 Query: 264 MSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYI 321 ++ + +R + VDPPR+GLDDA + + +P ++Y+ Sbjct: 385 GKAERIIPNWNK------------SGHRATAMIVDPPRTGLDDALLETITKFPPEKMVYV 432 Query: 322 SCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRKP 366 SCN +L +DL +L+ + +E + D FP+T E V L ++ Sbjct: 433 SCNVSTLAKDLVVLANYYKVEYIQSVDMFPHTARTEAVVKLTKRD 477 >gi|327481361|gb|AEA84671.1| 23S rRNA 5-methyluridine methyltransferase [Pseudomonas stutzeri DSM 4166] Length = 450 Score = 243 bits (621), Expect = 2e-62, Method: Composition-based stats. Identities = 88/372 (23%), Positives = 138/372 (37%), Gaps = 30/372 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHI-WHDGD 56 TL + QLA K L + + + YR RA + WH D Sbjct: 99 GCTLQHAAIDDQLALKQRTLGEQLARLAELKPERWAEPLTGPAFGYRRRARLAVRWHTRD 158 Query: 57 DLYHIMFDQ-QTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115 + F +++ + ID + L+ ++ + + ++ + ++ Sbjct: 159 KRLEVGFRSTASQDIVAIDQCPVLVQPLQTLLPGLLEALHGL-TKPQAIGHVELFSGTAE 217 Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175 ++ R RLR A + Q+ L G + + RL Sbjct: 218 AVLI-----RHTAPLPEIDLARLRTFTRAHQAQLWLQGEGEPQADVPGQ-ALGYRLEAWD 271 Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRV 234 L +R F Q NA +N M+ L+ G+ +L+L+CG GNFSL L R +V Sbjct: 272 LELAWR--PGDFVQVNAPVNEAMVAQALSWLGASAGERVLDLFCGLGNFSLPLGRQGAQV 329 Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294 + VE + V A+ N N + V R + L D F Sbjct: 330 VGVEGVEAMVARAQDNAQRNGLEQVHFYRADLSK------------PLADAPWARSGFDA 377 Query: 295 IFVDPPRSGLDDATVGMVQAY-PHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPY 352 + +DPPR G + M Q ++Y+SCNP +L RD L S ++R L D FP Sbjct: 378 VLLDPPRDGALEIVRQMTQLQARRVVYVSCNPATLARDARELASQGFRLKRAGLLDMFPQ 437 Query: 353 TRHMECGVLLVR 364 T H E L R Sbjct: 438 TAHAEAMALFER 449 >gi|239625789|ref|ZP_04668820.1| RNA methyltransferase [Clostridiales bacterium 1_7_47_FAA] gi|239520019|gb|EEQ59885.1| RNA methyltransferase [Clostridiales bacterium 1_7_47FAA] Length = 462 Score = 243 bits (621), Expect = 2e-62, Method: Composition-based stats. Identities = 89/401 (22%), Positives = 154/401 (38%), Gaps = 59/401 (14%) Query: 2 SGTLLID-QYEQQLAEKVDRLRQMMLAFQVPNLQIFRS---EPI--HYRMRAEFHIWHDG 55 G + YE QL K +++ ++ P+ F P+ YR + EF + Sbjct: 79 GGCIYQSLPYEAQLKIKEGQVKSLLDGVVEPDSYEFMGIKASPLEKGYRNKMEFSFGDEV 138 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMAT---------------IRLEPLL 100 D + + I P +++ ++ ++ + L Sbjct: 139 KDGPLALGMHRRGSFYDI-VTTPDCQIVHPDFCRILVATKEYFEELGTAFYKKLQHKGYL 197 Query: 101 RAKLFQIDYLTSQSDQAIVTLIYHRLL---DDA-----WRECAIRL------RDALHARK 146 R L + T + +VT L D+A W+E + L LH Sbjct: 198 RHLLVRRAVKTGEILVDLVTSTQREYLGGRDEAAVLSGWKERLLALPVDGRFAGILHTEN 257 Query: 147 YQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAAT 206 + + +++ T + +D+ E L L +R SF Q N+ + + Sbjct: 258 DSLADVVQSDATHVLYGQDFFYEELL----GLRFRISPFSFFQTNSMGAEVLYDTARGFV 313 Query: 207 KGIQGDLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265 + ++ +LY G G + +LA +V+ VEI + +VEAA+ N N ++N + V Sbjct: 314 GETKDKVVFDLYSGTGTIAQILAPVAKKVVGVEIVEEAVEAAKVNAGLNGLDNCEFVAGD 373 Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISC 323 LK ID + I VDPPR G+ +G + I+YISC Sbjct: 374 V---------------LKVIDDLEDKPDLIVVDPPRDGIHPKALGKIIEFGVDRIVYISC 418 Query: 324 NPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLV 363 P SL RDL +L + +E++ D FP T ++E L+ Sbjct: 419 KPTSLVRDLVVLQERGYRVEKVCAMDMFPGTGNVEVVTLMS 459 >gi|256820983|ref|YP_003142262.1| RNA methyltransferase, TrmA family [Capnocytophaga ochracea DSM 7271] gi|256582566|gb|ACU93701.1| RNA methyltransferase, TrmA family [Capnocytophaga ochracea DSM 7271] Length = 471 Score = 243 bits (621), Expect = 2e-62, Method: Composition-based stats. Identities = 78/400 (19%), Positives = 136/400 (34%), Gaps = 49/400 (12%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFHI----W 52 Y+ QL K + ++ I E +YR + EF W Sbjct: 83 GCKWQDMNYQSQLFYKQKEVENNLVRLGRIEIPAVMPIIGSDETYYYRNKMEFSFSDMRW 142 Query: 53 HDGDDLYHIMFDQQTK-----------ERMRIDYFMPGSLLINALMIEMMATIRLEPL-- 99 D++ + + ID + NA+ +E+ + Sbjct: 143 LTPDEIKKADEIDNRNALGFHIAGAWDKILDIDKCYLQADPSNAIRLEVKRFALANEMPF 202 Query: 100 -----LRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGR 154 L + S Q +V + + R +D + +Q Sbjct: 203 YSPRQQTGLLRTMMIRISSIGQIMVVIQFFR--NDPKITLLLDHIAETFPMITSLQYCIN 260 Query: 155 ANKTKICLDRDYV----DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ 210 + D++ + + + L ++ SF Q N+ L V ++ Sbjct: 261 SKGNDAIYDQELICYKGTDCIYEEMEGLRFKINAKSFYQTNSAQAYK-LYQVARNFADLK 319 Query: 211 GD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268 GD + +LY G G + +A+ +V+ VE ++ A+ N AN + NV K Sbjct: 320 GDELVYDLYTGTGTIAQFVAKKAKKVIGVEAVPEAIADAKDNAFANGIENVTFYVGDMKN 379 Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPD 326 E + I DPPR G+ V + A I+Y+SCN Sbjct: 380 IFNDTFIE-----------ENGTPDVIITDPPRDGMHKDVVAKILQIAPKKIVYVSCNSA 428 Query: 327 SLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRKP 366 + RDLS+L T+ + ++ D FP T H+E VLL ++ Sbjct: 429 TQARDLSLLDVTYKVTKVQPVDMFPQTYHVENVVLLEKRN 468 >gi|225027843|ref|ZP_03717035.1| hypothetical protein EUBHAL_02103 [Eubacterium hallii DSM 3353] gi|224954790|gb|EEG35999.1| hypothetical protein EUBHAL_02103 [Eubacterium hallii DSM 3353] Length = 560 Score = 243 bits (621), Expect = 2e-62, Method: Composition-based stats. Identities = 87/390 (22%), Positives = 156/390 (40%), Gaps = 47/390 (12%) Query: 2 SGTLLID-QYEQQLAEKVDRLRQMMLAFQVP-NLQIFRSEP--IHYRMRAEFHIWHDGDD 57 G + YEQQL K ++ +++ + +++ P YR + EF + D Sbjct: 96 GGCRYQNLSYEQQLDLKKRQVEELIEKNGLSFDIENIYGSPITEGYRNKMEFTFGDEEKD 155 Query: 58 LYHIMFDQQTKERMRI---DYFMPGSLLINALMIEMM-----------ATIRLEPLLRAK 103 + + I D N L+ ++ IR E LR Sbjct: 156 GPLALGMHKKNSFYDIVTLDDCRIVDPDFNVLLQAILKYFKEKGETYFHKIRHEGFLRHL 215 Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAW------RECAIRLRDALHARKYQIQLIGRANK 157 + + T +VT RL + + ++ ++ LH + + ++++ Sbjct: 216 VMRRSVKTGDILINLVTTTQSRLDESEFVNMILSQKIDGKVVGILHTLNDNLADVVQSDE 275 Query: 158 TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-EL 216 TK +DY E L + ++ SF Q N + + V + L+ +L Sbjct: 276 TKTLYGQDYFYEYLY----NMRFKISPFSFFQTNTLGAEVLYDKVREYVGETKDKLIYDL 331 Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276 Y G G + +LA +V+ VEI + +VEAA+ N NH++N + + Sbjct: 332 YTGTGTIAQMLASVASKVVGVEIVEEAVEAAKKNAVDNHLDNCEFIAGDV---------- 381 Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSI 334 LK +D + + + +DPPR G+ + + + ++Y+SC P SL RDL + Sbjct: 382 -----LKVVDNLTKKPDILVLDPPRDGIHPKALTKIINFNVDEMVYVSCKPTSLMRDLLV 436 Query: 335 L-STTHTIERLALFDQFPYTRHMECGVLLV 363 + ++R L D FP T H+E VLL Sbjct: 437 FREAGYEVKRACLVDMFPGTVHVETVVLLS 466 >gi|116513129|ref|YP_812036.1| tRNA (uracil-5-)-methyltransferase related enzyme [Lactococcus lactis subsp. cremoris SK11] gi|116108783|gb|ABJ73923.1| 23S rRNA m(5)U-1939 methyltransferase [Lactococcus lactis subsp. cremoris SK11] Length = 513 Score = 243 bits (621), Expect = 3e-62, Method: Composition-based stats. Identities = 73/405 (18%), Positives = 139/405 (34%), Gaps = 55/405 (13%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNL-------QIFRSEPIHYRMRAEFHIWH-DGD 56 ++ Y QL K D +RQ + ++ + + YR + +F + + Sbjct: 85 IMHLSYPMQLEFKRDVMRQALEKYKPAGWRNYELRATLGMENTLGYRNKLQFQVRRLNDG 144 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----------LRAKLFQ 106 + ++ + T + +D + ++ + I L +R + + Sbjct: 145 TVIAGLYQEGTHHLVNLDNCLVQDPKTQEIINHICRLIEKFDLPVYDERKIGGIRTVMVR 204 Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWRECAI------------------RLRDALHARKYQ 148 T + VT L W E L + Sbjct: 205 RSQKTGEVQIIFVTSTPIILDGQVWPELREEASKRQKNSFVKFDKMLSALTEEFEEIVTV 264 Query: 149 IQLIGRANKTKICLDRDYV----DERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVL 203 ++I +R V E +T + +F Q N+ + E V Sbjct: 265 AVNFHPRKTSEIYGERTQVLFNEKETITEGVLDYEFELSPRAFYQLNSEQANVLYGEAVK 324 Query: 204 AATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVR 263 A +++ YCG G +A+ V ++I S+ AR N + N Sbjct: 325 ALNPKKDDRVIDAYCGVGTIGFAVAKKVKSVHGMDITPESIFDARENAKRLGLKNCHYEI 384 Query: 264 MSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYI 321 ++ + +R + VDPPR+GLDDA + + +P ++Y+ Sbjct: 385 GKAERIIPNWNK------------SGHRATAMIVDPPRTGLDDALLETITKFPPEKMVYV 432 Query: 322 SCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRKP 366 SCN +L +DL +L+ + +E + D FP+T E V L ++ Sbjct: 433 SCNVSTLAKDLVVLANYYKVEYIQSVDMFPHTARTEAVVKLTKRD 477 >gi|150007675|ref|YP_001302418.1| RNA methyltransferase [Parabacteroides distasonis ATCC 8503] gi|255013620|ref|ZP_05285746.1| RNA methyltransferase [Bacteroides sp. 2_1_7] gi|262381816|ref|ZP_06074954.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides sp. 2_1_33B] gi|298375621|ref|ZP_06985578.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides sp. 3_1_19] gi|301310290|ref|ZP_07216229.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides sp. 20_3] gi|149936099|gb|ABR42796.1| RNA methyltransferase [Parabacteroides distasonis ATCC 8503] gi|262296993|gb|EEY84923.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides sp. 2_1_33B] gi|298268121|gb|EFI09777.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides sp. 3_1_19] gi|300831864|gb|EFK62495.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides sp. 20_3] Length = 470 Score = 243 bits (621), Expect = 3e-62, Method: Composition-based stats. Identities = 80/406 (19%), Positives = 148/406 (36%), Gaps = 61/406 (15%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIH-YRMRAEFHIWHDG- 55 YE+QL K ++ + ++ I SE YR + EF + Sbjct: 84 GCKWQHLPYEEQLYYKQKQVYDNLTRIGKVEMEEKLPILGSERTTFYRNKLEFTFSNKKW 143 Query: 56 --------DDLYHIMFDQQTK------ERMRIDYFMPGSLLINALMIEMMATI------- 94 + M + + I + N + + + Sbjct: 144 LTEEEIQSGASFDCMNGVGFHIPGMFDKVLDIHKCWLQDDISNKIRLCVKEYCLSHEGYP 203 Query: 95 -----RLEPLLRAKLFQIDYLTSQSDQAIVTLIYHR------LLDDAWRECAIRLRDALH 143 E +R + + S D +V + +H L E + ++ Sbjct: 204 FFDLRNQEGFVRTLMIRT---ASTGDLMVVLVFFHEDVERREALLSHLAERFPEITSLMY 260 Query: 144 ARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL 203 + + + +D++ E + L ++ SF Q N+ + L V Sbjct: 261 VINGKCNDTITDQEVLVFKGKDHIIEEM----EGLQFKVGPKSFYQTNSEQAYN-LYKVA 315 Query: 204 AATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261 G+ G+ + +LY G G + ++R +V+ +E ++E A+ N A NH+ N Sbjct: 316 REFAGLTGNEMVYDLYTGTGTIANFVSRQAKKVIGIEYVPEAIEDAKVNSALNHIENTLF 375 Query: 262 VRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHIL 319 K+ +D R I DPPR+G+ D + + I+ Sbjct: 376 YAGDMKDILT-----------QDFINQHGRPDVIITDPPRAGMHDDVINTILFAEPERIV 424 Query: 320 YISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 Y+SCNP + RDLS+LS ++++++ D FP+T H+E VLL +K Sbjct: 425 YVSCNPATQARDLSLLSVKYSVKKVRPVDMFPHTHHVENVVLLEKK 470 >gi|256839936|ref|ZP_05545445.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Parabacteroides sp. D13] gi|256738866|gb|EEU52191.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Parabacteroides sp. D13] Length = 470 Score = 243 bits (621), Expect = 3e-62, Method: Composition-based stats. Identities = 81/403 (20%), Positives = 148/403 (36%), Gaps = 55/403 (13%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIH-YRMRAEFHIWHDG- 55 YE+QL K ++ + ++ I SE YR + EF + Sbjct: 84 GCKWQHLPYEEQLYYKQKQVYDNLTRIGKVEMEEKLPILGSERTTFYRNKLEFTFSNKKW 143 Query: 56 --------DDLYHIMFDQQTK------ERMRIDYFMPGSLLINALMIEMMATIRLEPL-- 99 + M + + I + N + + + Sbjct: 144 LTEEEIQSGASFDCMNGVGFHIPGMFDKVLDIHKCWLQDDISNKIRLCVKEYCLSHERYP 203 Query: 100 ---LRAKLFQIDYL----TSQSDQAIVTLIYHR------LLDDAWRECAIRLRDALHARK 146 LR + + L S D +V + +H L E + ++ Sbjct: 204 FFDLRNQEGFVRTLMIRTASTGDLMVVLVFFHEDVERREALLSHLAERFPEITSLMYVIN 263 Query: 147 YQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAAT 206 + + + +D++ E + L ++ SF Q N+ + L V Sbjct: 264 GKCNDTITDQEVLVFKGKDHIIEEM----EGLQFKVGPKSFYQTNSEQAYN-LYKVAREF 318 Query: 207 KGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRM 264 G+ G+ + +LY G G + ++R +V+ +E ++E A+ N A NH+ N Sbjct: 319 AGLTGNEMVYDLYTGTGTIANFVSRQAKKVIGIEYVPEAIEDAKVNSALNHIENTLFYAG 378 Query: 265 SSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYIS 322 K+ +D R I DPPR+G+ D + + I+Y+S Sbjct: 379 DMKDILT-----------QDFINQHGRPDVIITDPPRAGMHDDVINTILFAEPERIVYVS 427 Query: 323 CNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 CNP + RDLS+LS ++++++ D FP+T H+E VLL +K Sbjct: 428 CNPATQARDLSLLSVKYSVKKVRPVDMFPHTHHVENVVLLEKK 470 >gi|170765935|ref|ZP_02900746.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia albertii TW07627] gi|170125081|gb|EDS94012.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia albertii TW07627] Length = 433 Score = 243 bits (621), Expect = 3e-62, Method: Composition-based stats. Identities = 87/368 (23%), Positives = 145/368 (39%), Gaps = 30/368 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHI 61 E Q K L ++M V + + P YR RA + + + Sbjct: 89 GCQQQHASVELQQRSKSAALARLM-KHDVSD--VIADTPWGYRRRARLSLNYLPKTQQLL 145 Query: 62 MFDQ--QTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119 M + T + + I + AL+ ++ A + +R L ++ + + S ++ Sbjct: 146 MGFRKSGTSDIVDIKQCPILVPQLEALLPKVRACLMSLQAIRH-LGHVELVQATSGTLMI 204 Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179 L + L+ A RE R H+ + L + + E L Sbjct: 205 -LRHTAPLNSADREKLERFS---HSEGLDLYLAPDSEILETVSG-----EMPWYDANGLR 255 Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVE 238 F Q NAG+N M+ L D +L+L+CG GNF+L +A V+ VE Sbjct: 256 LTFSPRDFIQVNAGVNQKMVAQALEWLDVQPDDRVLDLFCGMGNFTLPVATRAASVVGVE 315 Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298 VE + N N ++NV + ++ + F + +D Sbjct: 316 GVPALVEKGQENARLNGLHNVTFYHENLED------------DVTKQPWAKNGFDKVLLD 363 Query: 299 PPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHM 356 P R+G +++ P I+Y+SCNP +L RD ++L +TI RLA+ D FP+T H+ Sbjct: 364 PARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHL 423 Query: 357 ECGVLLVR 364 E VL R Sbjct: 424 ESMVLFSR 431 >gi|313887799|ref|ZP_07821479.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Peptoniphilus harei ACS-146-V-Sch2b] gi|312846142|gb|EFR33523.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Peptoniphilus harei ACS-146-V-Sch2b] Length = 443 Score = 243 bits (621), Expect = 3e-62, Method: Composition-based stats. Identities = 84/387 (21%), Positives = 148/387 (38%), Gaps = 46/387 (11%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVP-NLQIFRSEPIH--YRMRAEFHI---WHDG 55 + YE++L K + + + + ++I S P+H YR + E+ + G Sbjct: 73 GCSYQTLSYEEELKYKKELIENLFKENGIEREMEIIPS-PVHKNYRNKMEYTFGDEYKGG 131 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKL 104 + + E + N + E+ E LR L Sbjct: 132 PLSLGLHVKNRFHEIINTTDCKIVDEDFNTIRAEVRTYFEDLGEAQYNRKRHEGFLRHLL 191 Query: 105 FQIDYLTSQSDQAIVTLIYHRLLDDAWRECAI------RLRDALHARKYQIQLIGRANKT 158 + T + + T +L ++A+ + + ++ H + + + Sbjct: 192 IRKATKTGEIMILLSTSSQSQLDEEAFIKFLLGLDLKGQIVSIYHVKNDALSDAIVPEEI 251 Query: 159 KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYC 218 K+ +D+++E + L ++ SF Q N + + + +LY Sbjct: 252 KLIYGKDHIEEEVL----GLRFKISPFSFFQTNTKSAEVLYKMAREKIDAKDKLVFDLYS 307 Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278 G G + VLA +V+ VEI + +VEAAR N N ++NV+ + Sbjct: 308 GTGTITQVLAESAKKVIGVEIVEEAVEAARENAKLNGIDNVEFIASDV------------ 355 Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILS 336 LK +D I +DPPR G++ + + + LYISCNP +L RDL + Sbjct: 356 ---LKVLDDLDKNPDLIVLDPPREGINPKAIDKIIDFDPEKFLYISCNPVTLVRDLGVFK 412 Query: 337 T-THTIERLALFDQFPYTRHMECGVLL 362 + IE L + DQFP T H E LL Sbjct: 413 ERGYEIEELEIVDQFPKTSHAEVITLL 439 >gi|193065133|ref|ZP_03046207.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli E22] gi|194426363|ref|ZP_03058918.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli B171] gi|260845431|ref|YP_003223209.1| 23S rRNA (uracil-5)-methyltransferase [Escherichia coli O103:H2 str. 12009] gi|260856895|ref|YP_003230786.1| 23S rRNA (uracil-5)-methyltransferase [Escherichia coli O26:H11 str. 11368] gi|192927264|gb|EDV81884.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli E22] gi|194415671|gb|EDX31938.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli B171] gi|257755544|dbj|BAI27046.1| 23S rRNA (uracil-5)-methyltransferase [Escherichia coli O26:H11 str. 11368] gi|257760578|dbj|BAI32075.1| 23S rRNA (uracil-5)-methyltransferase [Escherichia coli O103:H2 str. 12009] gi|323154829|gb|EFZ41022.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli EPECa14] gi|323159900|gb|EFZ45870.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli E128010] Length = 433 Score = 243 bits (621), Expect = 3e-62, Method: Composition-based stats. Identities = 84/368 (22%), Positives = 143/368 (38%), Gaps = 30/368 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWH--DGDDLY 59 + Q K L ++M + ++ P YR RA + + L Sbjct: 89 GCQQQHASVDLQQRSKSAALARLM---KHDVSEVIADVPWGYRRRARLSLNYLPKTQQLQ 145 Query: 60 HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119 + + + + + AL+ ++ A + ++R L ++ + + S ++ Sbjct: 146 MGFRKAGSSDIVDVKQCPILVPQLEALLPKVRACLGSLQVMRH-LGHVELVQATSGTLMI 204 Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179 L + L A RE R H+ + L + + E L Sbjct: 205 -LRHTAPLSSADREKLERFS---HSEGLDLYLAPDSEILETVSG-----EMPWYDSNGLR 255 Query: 180 YRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVE 238 F Q NAG+N M+ L + +L+L+CG GNF+L LA+ V+ VE Sbjct: 256 LTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLAKQAASVVGVE 315 Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298 VE + N N + NV + +E + F + +D Sbjct: 316 GVPALVEKGQQNARLNGLQNVTFYHENLEE------------DVTKQPWAKNGFDKVLLD 363 Query: 299 PPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHM 356 P R+G +++ P I+Y+SCNP +L RD ++L +TI RLA+ D FP+T H+ Sbjct: 364 PARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHL 423 Query: 357 ECGVLLVR 364 E VL R Sbjct: 424 ESMVLFSR 431 >gi|302386126|ref|YP_003821948.1| RNA methyltransferase, TrmA family [Clostridium saccharolyticum WM1] gi|302196754|gb|ADL04325.1| RNA methyltransferase, TrmA family [Clostridium saccharolyticum WM1] Length = 453 Score = 243 bits (621), Expect = 3e-62, Method: Composition-based stats. Identities = 81/392 (20%), Positives = 152/392 (38%), Gaps = 47/392 (11%) Query: 2 SGTLL-IDQYEQQLAEKVDRLRQMMLAFQVP-NLQIFRSEPIH--YRMRAEFHIW--HDG 55 G + Y++QL K +++ ++ + P YR + EF + Sbjct: 79 GGCVYQTIPYKEQLKIKEQQVKALLDGVCEDYEFEGILPSPAEAEYRNKMEFSFGDEYKE 138 Query: 56 DDLYHIMFDQQTK-ERMRIDYFMPGSLLINALMIEMMA-----------TIRLEPLLRAK 103 L M + + + + + ++ + ++ LR Sbjct: 139 GPLALGMHKRGSFYDVVTTTECRIVNPDFCNILKAVKDYFENLGTGFYKKMQHTGYLRHL 198 Query: 104 LFQIDYLTSQSDQAIVTLIYH----RLLDDAWRECAI--RLRDALHARKYQIQLIGRANK 157 L + T + A+VT + + E + R+ LH + + ++++ Sbjct: 199 LVRRAVKTGEIMVALVTTTQEDVDLKPFTEMLLELPLNGRIVGILHIFNDSLADVVKSDR 258 Query: 158 TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-EL 216 T I +DY E L + ++ SF Q N+ + E V + ++ +L Sbjct: 259 TDILYGQDYFYEELL----GMKFKISPFSFFQTNSLGAEVLYETVRRYVGETKDKVVFDL 314 Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276 Y G G + ++A +V+ VEI K +V+AA+ N N + N + + Sbjct: 315 YSGTGTIAQMIAPVAKKVVGVEIVKEAVDAAKENTRLNGLENCEFIDGDV---------- 364 Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSI 334 LK ID + I +DPPR G+ +G + ++Y+SC P SL RDL + Sbjct: 365 -----LKVIDELPDKPDLIILDPPRDGIHPKALGKIIDFGVDRLVYVSCKPTSLARDLVV 419 Query: 335 LST-THTIERLALFDQFPYTRHMECGVLLVRK 365 L + +E+ D FP T ++E ++L RK Sbjct: 420 LQERGYKVEKACCVDMFPSTANVETIMMLERK 451 >gi|143811454|sp|Q5E320|RUMA_VIBF1 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase Length = 438 Score = 243 bits (621), Expect = 3e-62, Method: Composition-based stats. Identities = 93/369 (25%), Positives = 155/369 (42%), Gaps = 26/369 (7%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN---LQIFRSEPIHYRMRAEFHIWHDGDDL 58 L Q+E+Q+ K ++L+++M V +Q E + YR RA + Sbjct: 90 GCNLQHLQHEEQIVAKNEKLQELMKKQGVSQGEMVQPIMGEELSYRRRARISLML-NKQT 148 Query: 59 YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAI 118 + F + K+ I +L+ L + + L L+ K Q+D Sbjct: 149 NQLDFGFRKKQSKAIVNVRHCPVLVQELDQHLESLFTLLNQLKGKKHLGHVELVQADNGS 208 Query: 119 VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTL 178 V LI H + D + L + R + L+ A+ L+ +E + T Sbjct: 209 VLLIRH--VADFNEKDQQALVNYCEERNLILYLMPEAD----VLNHVRGEEPFYLIDGTK 262 Query: 179 IYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAV 237 IY F Q N +N M+E L+ + D +L+L+CG GNFSL LA+ V+ + Sbjct: 263 IY-FTPKDFIQVNRNVNEQMVEQALSWLDLNENDSVLDLFCGLGNFSLPLAKKVKTVVGI 321 Query: 238 EIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFV 297 E V+ A+ N N ++NV + + +E + + S +F I + Sbjct: 322 EGVDEMVQRAKLNAERNQLSNVSFYQANLEE------------EVSEQVWASTKFTKILL 369 Query: 298 DPPRSGLDDATVGMVQAYPH-ILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRH 355 DP R+G + + P ++Y+SCNP +L RD +L + RL + D FP+T H Sbjct: 370 DPARAGAAGVMETVAKLKPQTVVYVSCNPATLARDSQLLIQHGFKLTRLGMLDMFPHTGH 429 Query: 356 MECGVLLVR 364 +E L R Sbjct: 430 LESMALFER 438 >gi|288800143|ref|ZP_06405602.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella sp. oral taxon 299 str. F0039] gi|288333391|gb|EFC71870.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella sp. oral taxon 299 str. F0039] Length = 473 Score = 243 bits (621), Expect = 3e-62, Method: Composition-based stats. Identities = 78/405 (19%), Positives = 146/405 (36%), Gaps = 57/405 (14%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIF-----RSEPIHYRMRAEFHIWH--- 53 I YE QL K ++ + L F + + YR + EF + Sbjct: 84 GCKWQILPYEDQLKAKHQQVYDQLSRIGKIELPEFNYILGSVQTMQYRNKLEFGCSNKRW 143 Query: 54 ------DGDDLYHIMFDQQTK------ERMRIDYFMPGSLLINALMIEMMATIRLEPL-- 99 D + M + I L N + + + + Sbjct: 144 LTQEDIDSKKTFDNMNAIGFHITGAFDKIYPITQCQLMDDLQNQIRNHIYEYAIKQNISF 203 Query: 100 ----LRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRA 155 + L + + + ++ + L+ R +E A+ L + L QI + Sbjct: 204 YDLRNQHGLLRSIMVRNSNNNEWMVLVQFRFDQSNDKEKALALLEDLSNHFPQITSLLYV 263 Query: 156 NKTK-----------ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA 204 + K + +Y+ E + L ++ SF Q N H+ + V Sbjct: 264 DNQKCNDTFSDLTVEVYKGNNYIYELM----EDLKFKVGPKSFYQTNTEQAYHLYD-VTR 318 Query: 205 ATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262 G+ G+ + +LY G G + +A +V+ +E +++ A+ N N++NN Sbjct: 319 KFAGLTGNELVYDLYTGTGTIANFVAPKAKKVIGIEYVPEAIKDAKVNSQINNINNTLFY 378 Query: 263 RMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILY 320 K+ ++ R + I DPPR+G+ + + A I+Y Sbjct: 379 AGDMKDILS-----------QEFIEEHGRPEVIITDPPRAGMHPDVIQTILSAAPNRIVY 427 Query: 321 ISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 +SCNP + RDL+ + + + + D FP+T H+E VLL R+ Sbjct: 428 VSCNPATQARDLADFNKDYKVTAVQPVDMFPHTPHVENVVLLERR 472 >gi|197302048|ref|ZP_03167109.1| hypothetical protein RUMLAC_00776 [Ruminococcus lactaris ATCC 29176] gi|197298857|gb|EDY33396.1| hypothetical protein RUMLAC_00776 [Ruminococcus lactaris ATCC 29176] Length = 559 Score = 243 bits (621), Expect = 3e-62, Method: Composition-based stats. Identities = 90/394 (22%), Positives = 156/394 (39%), Gaps = 50/394 (12%) Query: 2 SGTLL-IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRS-----EPIHYRMRAEFHI---W 52 G + YE+Q+ K ++ ++M + IF S + HYR + EF + Sbjct: 81 GGCMYQTMSYEEQVKMKEGQIHRIMDPVVKGDY-IFESVKESPKEFHYRNKMEFSFGDEY 139 Query: 53 HDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMA-----------TIRLEPLLR 101 DG + T + + +N ++ ++A ++ LR Sbjct: 140 KDGPLSLGLHKKGSTYDVLTAADCQLVHRDMNQILSCVLAYFREWNVSYYKKMQHTGYLR 199 Query: 102 AKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRL------RDALHARKYQIQLIGRA 155 L + T + +VT +E + L LH + + ++ Sbjct: 200 HLLLRRGDTTGEILVNLVTTTQEEHDLTELKEQLLELPLEGKIVGILHILNDSLSDVVKS 259 Query: 156 NKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLL 214 ++T+I +D+ E+L L ++ SF QPN+ + E V I+ + Sbjct: 260 DETRILYGQDFFYEKLL----GLQFKITPFSFFQPNSRGAEVLYETVREYIGDIENKTVF 315 Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274 +L+ G G VLA +V+ VEI + +VEAA+ N N ++N K + + Sbjct: 316 DLFSGTGTIGQVLAPVAKKVIGVEIIEEAVEAAKENALRNGLSNCKFIAGDVFKVL---- 371 Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDL 332 D + I +DPPR G+ + + Y I+YISC SL RDL Sbjct: 372 -----------DEIEEKPDVIVLDPPRDGIHPKALPKILEYGVDRIVYISCKMTSLARDL 420 Query: 333 SILS-TTHTIERLALFDQFPYTRHMECGVLLVRK 365 ++ + +E++ DQF T H+E VLL K Sbjct: 421 EMMQMAGYRVEKMTAVDQFCETVHVESIVLLSHK 454 >gi|313205382|ref|YP_004044039.1| 23S rRNA m(5)u-1939 methyltransferase [Paludibacter propionicigenes WB4] gi|312444698|gb|ADQ81054.1| 23S rRNA m(5)U-1939 methyltransferase [Paludibacter propionicigenes WB4] Length = 469 Score = 243 bits (621), Expect = 3e-62, Method: Composition-based stats. Identities = 71/398 (17%), Positives = 142/398 (35%), Gaps = 46/398 (11%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHI----W 52 I Y++Q+ K ++ + + + ++ YR + EF W Sbjct: 84 GCKWQILPYQEQINYKQKQVVDNLTRIGKIDLPPVSPILGSAKTEFYRNKLEFTFSNKRW 143 Query: 53 HDGDDLYHI-----------MFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLL- 100 +++ Q + + I+ + N + E+ L Sbjct: 144 RTNEEIAEGKIFDTMNAVGFHIPGQFDKVLDINKCWLQTEDSNEIRNEVRRYALEHELTF 203 Query: 101 ------RAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGR 154 L + T+ + + ++ +++ +A + D + +I Sbjct: 204 FDLRSQEGFLRTLMVRTTSTGELMIIMVFFHEDKEAQNALLQHIADKFPQITSLLYIINS 263 Query: 155 ANKTKICLDRDYV---DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG 211 I ++ +E + L ++ SF Q N+ L + + G Sbjct: 264 KANDTITDQEIHIFKGNECIYEEMEGLKFKIGPKSFYQTNSDQAYE-LYKITRNFAQLTG 322 Query: 212 D--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269 + + +LY G G + ++ +V+ +E ++E A N N ++N K+ Sbjct: 323 NELVYDLYTGTGTIANFISHQAKQVIGIEYVPEAIEDAFVNSEINKISNTLFYAGDMKDI 382 Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDS 327 A E + I DPPR+G+ + + + A I+Y+SCNP + Sbjct: 383 LNAAFIE-----------EHGKPDVIITDPPRAGMHEDVINAILFAAPERIVYVSCNPAT 431 Query: 328 LCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 RDLS+L + + + D FP+T H+E VLL RK Sbjct: 432 QARDLSLLDCQYKVTAIQPVDMFPHTHHVENVVLLERK 469 >gi|332827346|gb|EGK00106.1| hypothetical protein HMPREF9455_03572 [Dysgonomonas gadei ATCC BAA-286] Length = 503 Score = 243 bits (620), Expect = 3e-62, Method: Composition-based stats. Identities = 77/408 (18%), Positives = 153/408 (37%), Gaps = 64/408 (15%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRS-----EPIHYRMRAEFHIWH--- 53 I Y +QL K ++ + +L + + YR + E+ + Sbjct: 116 GCKWQILPYAEQLKFKQKQVTDNLTRIGKVDLPEIQPILGSQKTEFYRNKLEYTFSNKKW 175 Query: 54 -----------------DGDDLYH-IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIR 95 DG + MFD+ + I+ + N + + Sbjct: 176 LTLEQLRSGENFADMNMDGLGFHIPGMFDK----VLDINKCWLQDDVSNQIRNFIRQYCH 231 Query: 96 LEPL----LRAK---LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQ 148 + LR + + + TS + + +V ++++ + + D Sbjct: 232 EKGYTFFDLRNRGGLMRNLIIRTSTTGELMVIVVFYDDEKQQQEDLLKAIADKFPQITAL 291 Query: 149 IQLIGRA-----NKTKICL--DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEW 201 + ++ + ++ D++ E + L ++ SF Q N+ + L Sbjct: 292 LYIVNQKANDTITDQEVLTWKGNDFIYEEM----EGLKFKIGPKSFYQTNSEQAYN-LYK 346 Query: 202 VLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259 V + + GD + +LY G G + +AR +V+ +E + ++E AR+N N ++N Sbjct: 347 VASDFARLNGDELVYDLYTGTGTIANFVARQSKKVVGIEYVEDAIEDARFNSMNNKIDNT 406 Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPH 317 K+ +D R I DPPR+G+ D + + Sbjct: 407 LFYAGDMKDILT-----------QDFINEHGRPDVIITDPPRAGMHDDVIKSILFAEPQR 455 Query: 318 ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 I+Y+SCNP + RDLS+L + + ++ D FP+T H+E VLL ++ Sbjct: 456 IVYVSCNPATQARDLSLLDEKYKVTKVQPVDMFPHTHHVENVVLLEKR 503 >gi|315224184|ref|ZP_07866024.1| 23S rRNA (uracil-5-)-methyltransferase [Capnocytophaga ochracea F0287] gi|314945917|gb|EFS97926.1| 23S rRNA (uracil-5-)-methyltransferase [Capnocytophaga ochracea F0287] Length = 471 Score = 243 bits (620), Expect = 3e-62, Method: Composition-based stats. Identities = 79/400 (19%), Positives = 138/400 (34%), Gaps = 49/400 (12%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQ---MMLAFQVPN--LQIFRSEPIHYRMRAEFHI----W 52 Y+ QL K + + ++P I E +YR + EF W Sbjct: 83 GCKWQDMNYQSQLFYKQKEVENNLVRLGRIKIPAVMPIIGSDETYYYRNKMEFSFSDMRW 142 Query: 53 HDGDDLYHIMFDQQTK-----------ERMRIDYFMPGSLLINALMIEMMATIRLEPL-- 99 D++ + + ID + NA+ +E+ + Sbjct: 143 LTPDEIKKADEIDNRNALGFHIAGAWDKILDIDKCYLQADPSNAIRLEIKRFALANEMPF 202 Query: 100 -----LRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGR 154 L + S Q +V + + R +D + +Q Sbjct: 203 YSPRQQTGLLRTMMIRISSIGQMMVVIQFFR--NDPKITLLLDHIAETFPMITSLQYCIN 260 Query: 155 ANKTKICLDRDYV----DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ 210 + D++ + + + L ++ SF Q N+ L V ++ Sbjct: 261 SKGNDAIYDQELICYKGTDCIYEEMEGLRFKINAKSFYQTNSAQAYK-LYQVARNFADLK 319 Query: 211 GD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268 GD + +LY G G + +A+ +V+ VE ++ A+ N AN + NV K Sbjct: 320 GDELVYDLYTGTGTIAQFVAKKAKKVIGVEAVPEAITDAKDNAFANGIENVTFYVGDMKN 379 Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPD 326 E + I DPPR G+ V + A I+Y+SCN Sbjct: 380 IFNDTFIE-----------ENGTPDVIITDPPRDGMHKDVVAKILQIAPKKIVYVSCNSA 428 Query: 327 SLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRKP 366 + RDLS+L T+ + ++ D FP T H+E VLL ++ Sbjct: 429 TQARDLSLLDVTYKVTKVQPVDMFPQTYHVENVVLLEKRN 468 >gi|59712688|ref|YP_205464.1| 23S rRNA 5-methyluridine methyltransferase [Vibrio fischeri ES114] gi|59480789|gb|AAW86576.1| 23S rRNA (uracil-5)-methyltransferase [Vibrio fischeri ES114] Length = 449 Score = 243 bits (620), Expect = 4e-62, Method: Composition-based stats. Identities = 93/369 (25%), Positives = 155/369 (42%), Gaps = 26/369 (7%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN---LQIFRSEPIHYRMRAEFHIWHDGDDL 58 L Q+E+Q+ K ++L+++M V +Q E + YR RA + Sbjct: 101 GCNLQHLQHEEQIVAKNEKLQELMKKQGVSQGEMVQPIMGEELSYRRRARISLML-NKQT 159 Query: 59 YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAI 118 + F + K+ I +L+ L + + L L+ K Q+D Sbjct: 160 NQLDFGFRKKQSKAIVNVRHCPVLVQELDQHLESLFTLLNQLKGKKHLGHVELVQADNGS 219 Query: 119 VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTL 178 V LI H + D + L + R + L+ A+ L+ +E + T Sbjct: 220 VLLIRH--VADFNEKDQQALVNYCEERNLILYLMPEAD----VLNHVRGEEPFYLIDGTK 273 Query: 179 IYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAV 237 IY F Q N +N M+E L+ + D +L+L+CG GNFSL LA+ V+ + Sbjct: 274 IY-FTPKDFIQVNRNVNEQMVEQALSWLDLNENDSVLDLFCGLGNFSLPLAKKVKTVVGI 332 Query: 238 EIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFV 297 E V+ A+ N N ++NV + + +E + + S +F I + Sbjct: 333 EGVDEMVQRAKLNAERNQLSNVSFYQANLEE------------EVSEQVWASTKFTKILL 380 Query: 298 DPPRSGLDDATVGMVQAYPH-ILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRH 355 DP R+G + + P ++Y+SCNP +L RD +L + RL + D FP+T H Sbjct: 381 DPARAGAAGVMETVAKLKPQTVVYVSCNPATLARDSQLLIQHGFKLTRLGMLDMFPHTGH 440 Query: 356 MECGVLLVR 364 +E L R Sbjct: 441 LESMALFER 449 >gi|300923242|ref|ZP_07139296.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS 182-1] gi|301325725|ref|ZP_07219182.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS 78-1] gi|300420481|gb|EFK03792.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS 182-1] gi|300847475|gb|EFK75235.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS 78-1] Length = 433 Score = 243 bits (620), Expect = 4e-62, Method: Composition-based stats. Identities = 84/368 (22%), Positives = 141/368 (38%), Gaps = 30/368 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWH--DGDDLY 59 + Q K L ++M + ++ P YR RA + + L Sbjct: 89 GCQQQHASVDLQQRSKSAALARLM---KHDVSEVIADVPWGYRRRARLSLNYLPKTQQLQ 145 Query: 60 HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119 + + + + + + AL ++ A + +R L ++ + + S ++ Sbjct: 146 MGFRKAGSSDIVDVKQCPILAPQLEALQPKVRACLGSLQAMRH-LGHVELVQATSGTLMI 204 Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179 L + L A RE R H+ + L + + E L Sbjct: 205 -LRHTAPLSSADREKLERFS---HSEGLDLYLAPDSEILETVSG-----EMPWYDSNGLR 255 Query: 180 YRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVE 238 F Q NAG+N M+ L + +L+L+CG GNF+L LA V+ VE Sbjct: 256 LTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVE 315 Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298 VE + N N + NV + +E + F + +D Sbjct: 316 GVPALVEKGQQNARLNGLQNVTFYHENLEE------------DVTKQPWAKNGFDKVLLD 363 Query: 299 PPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHM 356 P R+G +++ P I+Y+SCNP +L RD ++L +TI RLA+ D FP+T H+ Sbjct: 364 PARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHL 423 Query: 357 ECGVLLVR 364 E VL R Sbjct: 424 ESMVLFSR 431 >gi|269965227|ref|ZP_06179361.1| 23S rRNA (uracil-5-)-methyltransferase [Vibrio alginolyticus 40B] gi|269830213|gb|EEZ84440.1| 23S rRNA (uracil-5-)-methyltransferase [Vibrio alginolyticus 40B] Length = 439 Score = 243 bits (620), Expect = 4e-62, Method: Composition-based stats. Identities = 81/371 (21%), Positives = 153/371 (41%), Gaps = 30/371 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI---FRSEPIHYRMRAEFHIWHDGD-- 56 L Y+QQL K LRQ+M F ++++ + YR RA ++ D Sbjct: 90 GCDLQHLDYDQQLTYKQQTLRQLMRKFSGSDIELDAPLLGDSQAYRRRARVSLFVDKKTR 149 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116 L+ +Q+K+ ++ + +N L+ E+ + ++ +L ++ + + Sbjct: 150 QLHFGFRKKQSKQIAQVTDCPVLAPELNVLLPEIYSALKAFKK-PEQLGHVELVLGDNGP 208 Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGR 176 I TL + L + + L + L+ + + + + V Sbjct: 209 CI-TLRHLSALTTSETQSLTELAKR---HGASLYLMPSTEQLDLIEGDIPFYQEVGVKIP 264 Query: 177 TLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVL 235 N+F Q N G+N M++ + + D +L+L+CG GNFSL +A+ V+ Sbjct: 265 -----FAPNNFIQVNQGVNQQMVKQAVEWLDPQKSDRVLDLFCGLGNFSLPVAKLAKHVV 319 Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295 VE VE A N + N +NN + + ++ + + RF + Sbjct: 320 GVEGVAEMVEKATNNASLNQINNAQFYHANLEQ------------DFEGQAWAAERFDKV 367 Query: 296 FVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYT 353 +DP R+G + + ++Y+SCNP +L RD L + + +L + D FP+T Sbjct: 368 LLDPARAGASGIIDQVSELGAQRVVYVSCNPATLARDSQSLIEQGYKLTKLGMLDMFPHT 427 Query: 354 RHMECGVLLVR 364 H+E L + Sbjct: 428 SHLESMALFEK 438 >gi|237738336|ref|ZP_04568817.1| tRNA (uracil-5-)-methyltransferase [Fusobacterium mortiferum ATCC 9817] gi|229420216|gb|EEO35263.1| tRNA (uracil-5-)-methyltransferase [Fusobacterium mortiferum ATCC 9817] Length = 450 Score = 243 bits (620), Expect = 4e-62, Method: Composition-based stats. Identities = 70/383 (18%), Positives = 153/383 (39%), Gaps = 33/383 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL----QIFRSEPIHYRMRAEFHIWHDGDD 57 + +YE QL K + +M ++ I +P HYR + + Sbjct: 81 GCDFGMLKYEAQLKYKKAMVEDVMKKIGKLDILVKDVIGSEDPYHYRNKIIEPFSKYNGE 140 Query: 58 LYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-------LRAKLFQIDYL 110 + F +++ + +++ + S L N ++ E+ + E + KL I Sbjct: 141 IITGFFKRKSHDIFQVEENILNSRLGNEIIRELKKILNREKVSVYDEKEHSGKLRHIMVR 200 Query: 111 TSQSDQAIVTLIYH-RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR----D 165 T+ +A+V LI + ++ ++ + L++ + + K I + +T L Sbjct: 201 TNSKGEAMVVLIINATKVEKRDKDILMELKNKITSIK-SIYISLNNKRTNFALGEKNIFI 259 Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFS 224 + ++ + + + SF Q N + + I+ +++ Y G G + Sbjct: 260 WGEKGIKEEIDGINFNISPKSFFQINLPQTKKLYSTAINYFPNIENKYIVDAYSGTGTIA 319 Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284 ++L++ ++V A+E+ + + N + N++ + + ++ ++ + Sbjct: 320 MMLSKKAEKVYAIELVESATLDGMKTAGENGIENIEFINGAVED------------KMLE 367 Query: 285 IDIHSYRFKTIFVDPPRSGLDDATV--GMVQAYPHILYISCNPDSLCRDLSILST-THTI 341 + R I DPPR G+++ ++ I+YISCNP + RD ILS + I Sbjct: 368 LINAGKRVDAIIFDPPRKGIEEKSLIKTAESGIKEIVYISCNPSTFARDAEILSRLGYKI 427 Query: 342 ERLALFDQFPYTRHMECGVLLVR 364 + + D FP T H E + Sbjct: 428 DEVQPVDMFPGTSHTEVVGRFYK 450 >gi|284036603|ref|YP_003386533.1| RNA methyltransferase, TrmA family [Spirosoma linguale DSM 74] gi|283815896|gb|ADB37734.1| RNA methyltransferase, TrmA family [Spirosoma linguale DSM 74] Length = 476 Score = 243 bits (620), Expect = 4e-62, Method: Composition-based stats. Identities = 84/402 (20%), Positives = 144/402 (35%), Gaps = 54/402 (13%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRS-----EPIHYRMRAEFHIWHD-- 54 QY +QL K ++ + L FR +YR + EF Sbjct: 91 GCKWQHIQYSEQLGFKHQQVVDHLTRIGKVELPEFRPIMPAHPTQYYRNKLEFTCAEGRW 150 Query: 55 ------------GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL--- 99 + + + I + NA+ + A + + Sbjct: 151 LTSAEVGTNQPMDQRAVGFHVPGRFDKVLPIRHCYLQPDPSNAIREAIDAYVLQHDMTLY 210 Query: 100 --------LRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQL 151 LR + + T Q + + L + L + + Y + Sbjct: 211 NLKMHTGFLRTLIIRTADTTQQVMVTLQVAQDNPELLNGLMTYLQTLFPQITSLNYILNT 270 Query: 152 IGRAN--KTKIC--LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATK 207 + ++ + Y++E++ L +R SF Q NA + L V Sbjct: 271 KKNDSYQDQEVVNWAGKPYIEEQM----EALTFRIGPKSFYQTNA-QQAYNLYKVAREFA 325 Query: 208 GIQG--DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265 G+ G + +LY G G +L +AR V+ VE + SV AR N N + N V Sbjct: 326 GLTGQERVYDLYTGTGTIALFVARLAKHVVGVEYVEASVADARVNAQVNGIANTTFVAGD 385 Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDAT-VGMVQAYP-HILYISC 323 K + R + DPPR+G+D+A +++A P I+Y+SC Sbjct: 386 MKAILTD-----------EFFAEHGRPDVVITDPPRAGMDEAVTRQLLKAAPERIVYVSC 434 Query: 324 NPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 N + RDL+IL +T+ + D FP+T H+E V+L ++ Sbjct: 435 NTATQARDLAILDEGYTVTGVQPVDMFPHTHHVENVVVLTKR 476 >gi|16130692|ref|NP_417265.1| 23S rRNA m(5)U1939 methyltransferase, SAM-dependent [Escherichia coli str. K-12 substr. MG1655] gi|89109571|ref|AP_003351.1| 23S rRNA (uracil-5)-methyltransferase [Escherichia coli str. K-12 substr. W3110] gi|157162239|ref|YP_001459557.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia coli HS] gi|170082356|ref|YP_001731676.1| 23S rRNA (uracil-5)-methyltransferase [Escherichia coli str. K-12 substr. DH10B] gi|238901923|ref|YP_002927719.1| 23S rRNA (uracil-5)-methyltransferase [Escherichia coli BW2952] gi|254037835|ref|ZP_04871893.1| 23S rRNA (uracil-5)-methyltransferase [Escherichia sp. 1_1_43] gi|256024712|ref|ZP_05438577.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia sp. 4_1_40B] gi|300906690|ref|ZP_07124378.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS 84-1] gi|300950513|ref|ZP_07164423.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS 116-1] gi|300958099|ref|ZP_07170259.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS 175-1] gi|301026290|ref|ZP_07189745.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS 196-1] gi|301304553|ref|ZP_07210663.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS 124-1] gi|301645251|ref|ZP_07245203.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS 146-1] gi|307139471|ref|ZP_07498827.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia coli H736] gi|312972999|ref|ZP_07787172.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli 1827-70] gi|331643470|ref|ZP_08344601.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli H736] gi|1723811|sp|P55135|RUMA_ECOLI RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|62738954|pdb|2BH2|A Chain A, Crystal Structure Of E. Coli 5-Methyluridine Methyltransferase Ruma In Complex With Ribosomal Rna Substrate And S-Adenosylhomocysteine. gi|62738955|pdb|2BH2|B Chain B, Crystal Structure Of E. Coli 5-Methyluridine Methyltransferase Ruma In Complex With Ribosomal Rna Substrate And S-Adenosylhomocysteine. gi|882679|gb|AAA69295.1| alternate gene name ygcA; ORF_f433 [Escherichia coli str. K-12 substr. MG1655] gi|1789148|gb|AAC75827.1| 23S rRNA m(5)U1939 methyltransferase, SAM-dependent [Escherichia coli str. K-12 substr. MG1655] gi|85675604|dbj|BAE76859.1| 23S rRNA (uracil-5)-methyltransferase [Escherichia coli str. K12 substr. W3110] gi|157067919|gb|ABV07174.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli HS] gi|169890191|gb|ACB03898.1| 23S rRNA (uracil-5)-methyltransferase [Escherichia coli str. K-12 substr. DH10B] gi|226839459|gb|EEH71480.1| 23S rRNA (uracil-5)-methyltransferase [Escherichia sp. 1_1_43] gi|238859753|gb|ACR61751.1| 23S rRNA (uracil-5)-methyltransferase [Escherichia coli BW2952] gi|260448164|gb|ACX38586.1| RNA methyltransferase, TrmA family [Escherichia coli DH1] gi|299879749|gb|EFI87960.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS 196-1] gi|300315219|gb|EFJ65003.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS 175-1] gi|300401525|gb|EFJ85063.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS 84-1] gi|300450173|gb|EFK13793.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS 116-1] gi|300840157|gb|EFK67917.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS 124-1] gi|301076454|gb|EFK91260.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS 146-1] gi|309703143|emb|CBJ02477.1| 23s rRNA (uracil-5-)-methyltransferase [Escherichia coli ETEC H10407] gi|310332941|gb|EFQ00155.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli 1827-70] gi|315137392|dbj|BAJ44551.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia coli DH1] gi|315256644|gb|EFU36612.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS 85-1] gi|315615171|gb|EFU95808.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli 3431] gi|323935853|gb|EGB32156.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli E1520] gi|323941534|gb|EGB37716.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli E482] gi|331036941|gb|EGI09165.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli H736] gi|332344676|gb|AEE58010.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli UMNK88] Length = 433 Score = 243 bits (620), Expect = 4e-62, Method: Composition-based stats. Identities = 84/368 (22%), Positives = 142/368 (38%), Gaps = 30/368 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWH--DGDDLY 59 + Q K L ++M + ++ P YR RA + + L Sbjct: 89 GCQQQHASVDLQQRSKSAALARLM---KHDVSEVIADVPWGYRRRARLSLNYLPKTQQLQ 145 Query: 60 HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119 + + + + + + AL+ ++ A + +R L ++ + + S ++ Sbjct: 146 MGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMRH-LGHVELVQATSGTLMI 204 Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179 L + L A RE R H+ + L + + E L Sbjct: 205 -LRHTAPLSSADREKLERFS---HSEGLDLYLAPDSEILETVSG-----EMPWYDSNGLR 255 Query: 180 YRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVE 238 F Q NAG+N M+ L + +L+L+CG GNF+L LA V+ VE Sbjct: 256 LTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVE 315 Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298 VE + N N + NV + +E + F + +D Sbjct: 316 GVPALVEKGQQNARLNGLQNVTFYHENLEE------------DVTKQPWAKNGFDKVLLD 363 Query: 299 PPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHM 356 P R+G +++ P I+Y+SCNP +L RD ++L +TI RLA+ D FP+T H+ Sbjct: 364 PARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHL 423 Query: 357 ECGVLLVR 364 E VL R Sbjct: 424 ESMVLFSR 431 >gi|300936300|ref|ZP_07151232.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS 21-1] gi|300458552|gb|EFK22045.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS 21-1] Length = 433 Score = 242 bits (619), Expect = 4e-62, Method: Composition-based stats. Identities = 84/368 (22%), Positives = 142/368 (38%), Gaps = 30/368 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWH--DGDDLY 59 + Q K L ++M + ++ P YR RA + + L Sbjct: 89 GCQQQHASVDLQQRSKSAALARLM---KHEVSEVIADVPWGYRRRARLSLNYLPKTQQLQ 145 Query: 60 HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119 + + + + + AL+ ++ A + +R L ++ + + S ++ Sbjct: 146 MGFRKAGSSDIVDVKQCPILVPQLEALLPKVRACLGSLQAMRH-LGHVELVQATSGTLMI 204 Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179 L + L A RE R H+ + L + + E L Sbjct: 205 -LRHTAPLSSADREKLERFS---HSEGLDLYLAPDSEILETVSG-----EMPWYDSNGLR 255 Query: 180 YRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVE 238 F Q NAG+N M+ L + +L+L+CG GNF+L LA V+ VE Sbjct: 256 LTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVE 315 Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298 VE + N N ++NV + +E + F + +D Sbjct: 316 GVPALVEKGQQNARLNGLHNVTFYHENLEE------------DVTKQPWAKNGFDKVLLD 363 Query: 299 PPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHM 356 P R+G +++ P I+Y+SCNP +L RD ++L +TI RLA+ D FP+T H+ Sbjct: 364 PARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHL 423 Query: 357 ECGVLLVR 364 E VL R Sbjct: 424 ESMVLFSR 431 >gi|331084332|ref|ZP_08333436.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lachnospiraceae bacterium 6_1_63FAA] gi|330401596|gb|EGG81177.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lachnospiraceae bacterium 6_1_63FAA] Length = 472 Score = 242 bits (619), Expect = 4e-62, Method: Composition-based stats. Identities = 83/408 (20%), Positives = 151/408 (37%), Gaps = 66/408 (16%) Query: 2 SGTLL-IDQYEQQLAEKVDRLRQMMLAF----------QVPNLQI----FRSEPIHYRMR 46 G + YE+QL K ++++++ P+ + YR + Sbjct: 79 GGCMYQTMSYEEQLNMKAAQVKKLIDEAVIRGGQVDTEGKPDYIFEGIKGSPQEFAYRNK 138 Query: 47 AEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATI------------ 94 EF + D + + + L++ M +++ I Sbjct: 139 MEFSFGDEYKDGPLSLGLHKKGSTYDV-LNACDCKLVHEDMTKILTCILEYCREEGFSYY 197 Query: 95 ---RLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRL---------RDAL 142 + LR L + T + +V L+ ++ + E RL L Sbjct: 198 HKMQHTGFLRHLLLRRGNTTG---EILVNLVTTSEIETDFAELQKRLLALPLEGKIVGFL 254 Query: 143 HARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWV 202 H + + R+++T+I +DY E + L ++ SF QPN+ + + Sbjct: 255 HIINNSLSDVVRSDETRILYGQDYFYEEIL----GLKFKITPFSFFQPNSYGAEVLYKTA 310 Query: 203 LAATKGIQG-DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261 + + +LY G G S ++A V+ VEI + +V+AA N N + N + Sbjct: 311 REYIGDTKEMTVFDLYSGTGTISQIMASVAKEVIGVEIVEEAVKAAGENAHLNGIENCRF 370 Query: 262 VRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHIL 319 + LK +D + I +DPPR G+ + + ++ Sbjct: 371 IAGDV---------------LKVLDDIQEKPDFIILDPPRDGIHPKALPKIIDYGVDKLV 415 Query: 320 YISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVLLVRKP 366 YISC P SL RDL L + +E++ DQF T H+E LL ++ Sbjct: 416 YISCKPTSLARDLEMFLGRGYQVEKVCCVDQFCQTVHVETVCLLSKRD 463 >gi|255549690|ref|XP_002515896.1| RNA m5u methyltransferase, putative [Ricinus communis] gi|223544801|gb|EEF46316.1| RNA m5u methyltransferase, putative [Ricinus communis] Length = 577 Score = 242 bits (619), Expect = 4e-62, Method: Composition-based stats. Identities = 77/423 (18%), Positives = 139/423 (32%), Gaps = 78/423 (18%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQV-----PNLQIFRSE------PIHYRMRAEFH 50 YE Q+ K ++R++++ P HYR + EF Sbjct: 170 GCKTQNLSYEAQVRAKELQVRELVINIGKFSDIDPEFVSIMKPIVPCDVKFHYRNKMEFS 229 Query: 51 IWHDGDDLYHIMFDQQT---------------KERMRIDYFMPGSLLINALMIEMMATIR 95 ++ ++Q + + +D + S N ++ + R Sbjct: 230 FGSKKWLPRELLGEKQDGSVNYALGLHAPGCFDKVLNVDKCLLQSEPANTVLATVQDCWR 289 Query: 96 LE-------------PLLRAKLFQIDYLTSQSDQAI----VTLIYHRLLDDAWRECAIRL 138 L+ + + T + VT Y L E + Sbjct: 290 DSQFGLTPYDVHSHDGFLKHLMLRTGRNTETGLLELMVNFVTSAYKPELLKIIVEKISAI 349 Query: 139 RD---ALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGIN 195 + ++ + + + + E L R L ++ NSF Q N Sbjct: 350 PEVVSIVNNVNSSVGNTSVGEEEYTIYGKSTITEIL----RGLTFQISANSFFQTNTRQA 405 Query: 196 VHMLEWVLAATKGIQGD----LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251 +L ++ G++GD +L+L+CG G L LA V E+ ++ AR N Sbjct: 406 E-VLYKLIEDCAGLRGDGSEIVLDLFCGTGTIGLTLAGRAKHVYGYEVVPQAISDARRNA 464 Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD--DATV 309 N + N V+ + + + + + + DP R G+ Sbjct: 465 ELNGITNATFVQGDLNKISDSF------------GNNFPKPDIVISDPNRPGMHMKLIKF 512 Query: 310 GMVQAYPHILYISCNPDSLCRDLSILSTT---------HTIERLALFDQFPYTRHMECGV 360 + P I+Y+SCNP + RDL L + ++ L D FP+T H+EC Sbjct: 513 LLKLKAPRIVYVSCNPATCARDLDYLCHGVEEQNIKGCYKLKSLQPVDMFPHTPHIECVC 572 Query: 361 LLV 363 LL Sbjct: 573 LLE 575 >gi|302345320|ref|YP_003813673.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella melaninogenica ATCC 25845] gi|302149971|gb|ADK96233.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella melaninogenica ATCC 25845] Length = 474 Score = 242 bits (619), Expect = 4e-62, Method: Composition-based stats. Identities = 81/402 (20%), Positives = 145/402 (36%), Gaps = 63/402 (15%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPNLQIFRS-----EPIHYRMRAEFHI----WH------ 53 YE+QL K ++ + L FR YR + EF W+ Sbjct: 91 PYEEQLKAKQQQVYDQLSRIGKVELPEFRPIMGSVHTKEYRNKLEFGCANKRWYTEEELK 150 Query: 54 ---------DGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----- 99 +G +HI + I+ L N + ++ + Sbjct: 151 ALPEGIGLAEGAIGFHITGAFD--KVYPIEKCWLMDDLCNEIRKDIRDYALSTGMKFYDI 208 Query: 100 --LRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANK 157 L I S + + +V + +H ++ E A L + R QI + + Sbjct: 209 RAQHGLLRDIMVRNSNTGEWMVLVQFHYD-EEGDDERAKALMQHIADRFPQISSLFYVDN 267 Query: 158 TK-----------ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAAT 206 K + D++ E + L ++ SF Q N H+ Sbjct: 268 QKGNDTFNDLELTLFKGNDHIFETM----EDLRFKVGPKSFYQTNTEQAYHLYSVAREFA 323 Query: 207 KGIQGDLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265 +L+ +LY G G + +A+ +V+ +E ++E A+ N N ++N Sbjct: 324 NLTGNELVYDLYTGTGTIANFVAKKAQKVIGIEYVPEAIEDAKVNSEVNKIDNTLFYAGD 383 Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISC 323 K+ +D R I DPPR+G+ V ++ + I+Y+SC Sbjct: 384 MKDILT-----------EDFISEHGRPDVIITDPPRAGMHPDVVNVILGASPKRIVYVSC 432 Query: 324 NPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 NP + RDL++L + + + D FP+T H+E VLL ++ Sbjct: 433 NPATQARDLALLDADYKVSAVQPVDMFPHTPHVENVVLLEKR 474 >gi|260912576|ref|ZP_05919108.1| TrmA family RNA methyltransferase [Prevotella sp. oral taxon 472 str. F0295] gi|260633341|gb|EEX51499.1| TrmA family RNA methyltransferase [Prevotella sp. oral taxon 472 str. F0295] Length = 502 Score = 242 bits (619), Expect = 5e-62, Method: Composition-based stats. Identities = 79/399 (19%), Positives = 145/399 (36%), Gaps = 57/399 (14%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSE-----PIHYRMRAEFHIWHDG-------- 55 YE+QL K ++ + L F +HYR + EF + Sbjct: 120 PYEEQLRAKQQQVYDQLSRISHVQLPTFYPIMGSQLTLHYRNKLEFGCSNKRWLTREEVA 179 Query: 56 -DDLYHIMFDQQTK------ERMRIDYFMPGSLLINALMIEMMATIRLEPL----LR--- 101 + M + + I+ L N + E+ + + LR Sbjct: 180 SGATFDTMNAIGFHITGAFDKILPIEKCWLMDDLQNQIRNEIRDYALTKGISFFDLRQQT 239 Query: 102 AKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTK-- 159 L + S + + +V + +H ++ A L + QI + + K Sbjct: 240 GLLRDVMIRNSDTGEWMVLVQFHFETATD-QQTAEALLAHVGEHFPQITSLLWVDNQKCN 298 Query: 160 ---------ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGI 209 + ++ E + L ++ SF Q N H+ + A+ Sbjct: 299 DTFGDLPVHVFKGNGHIFEVM----EDLRFKVGPKSFYQTNTQQAYHLYDVARRFASLSG 354 Query: 210 QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269 + +LY G G + +AR +V+ VE ++E A+ N N ++N K+ Sbjct: 355 TETVYDLYTGTGTIANFVARQAKKVVGVEYVPEAIEDAKVNSELNGISNTTFYAGDMKDI 414 Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDS 327 + ++ + I DPPR+G+ + +++A P I+Y+SCNP + Sbjct: 415 LND-----------EFIANNGQPDVIITDPPRAGMHADVIETIIRANPQRIVYVSCNPAT 463 Query: 328 LCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRKP 366 RDL L + + + D FP+T H+E VLL R+ Sbjct: 464 QARDLIALDERYAVTAVQPVDMFPHTPHVENVVLLERRN 502 >gi|326791294|ref|YP_004309115.1| RNA methyltransferase, TrmA family [Clostridium lentocellum DSM 5427] gi|326542058|gb|ADZ83917.1| RNA methyltransferase, TrmA family [Clostridium lentocellum DSM 5427] Length = 451 Score = 242 bits (619), Expect = 5e-62, Method: Composition-based stats. Identities = 73/391 (18%), Positives = 149/391 (38%), Gaps = 47/391 (12%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIW---HD 54 + Y++Q+ K +++++++ + + + I E + YR + EF D Sbjct: 80 GCSAQNLDYDEQIHLKHEQVKELLTKAGISDYEDLGVIGSPEALAYRNKMEFSFGDEVKD 139 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYL---- 110 G + T + + +D + + ++ ++ + L K Q Sbjct: 140 GPMTLGMHRKHSTYDVITVDGCLLVDEDFSTILRTILDYCKDNDLNYYKKMQHTGFMRYV 199 Query: 111 ----TSQSDQAIVTLIYHRLLDDAWRECAI---------RLRDALHARKYQIQLIGRANK 157 + + +V ++ D ++ A +L +H + + K Sbjct: 200 VIRKSITFGEILVNIVTSSQKDFSFIPLATLLAHLPLKGKLTGVIHTITDNLADAIKPEK 259 Query: 158 TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLEL 216 + +D + E++ L + SF Q N + + L+ + + +L Sbjct: 260 VSVIYGQDTIREQIL----GLQFNISPFSFFQTNTKGAELLYKNALSLIDDMDNKTVFDL 315 Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276 YCG G + ++A +V +EI + +++ A+ N NH+ N + Sbjct: 316 YCGTGTITQIMATRAKKVYGIEIVEEAIDKAKENAIFNHLTNCHFIAGDV---------- 365 Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSI 334 + ++D I +DPPR G+ + + +LYISC P SL RDL I Sbjct: 366 -----MVEVDQLKETPDIIILDPPRDGIHPKAIQKIINFGAKELLYISCKPTSLTRDLPI 420 Query: 335 L-STTHTIERLALFDQFPYTRHMECGVLLVR 364 L + I+++ D FP T H+E V L + Sbjct: 421 LKEAGYHIDKVLCVDMFPQTPHVETVVKLSK 451 >gi|332292761|ref|YP_004431370.1| RNA methyltransferase, TrmA family [Krokinobacter diaphorus 4H-3-7-5] gi|332170847|gb|AEE20102.1| RNA methyltransferase, TrmA family [Krokinobacter diaphorus 4H-3-7-5] Length = 470 Score = 242 bits (619), Expect = 5e-62, Method: Composition-based stats. Identities = 77/406 (18%), Positives = 144/406 (35%), Gaps = 62/406 (15%) Query: 2 SGTLLIDQYEQQLAEKVDRLR---QMMLAFQVPN--LQIFRSEPIHYRMRAEFHIW---- 52 Y+ QL K + + + ++P SE YR + EF Sbjct: 85 GCKWQHMDYKFQLEYKQQEVENNLKRLGKIELPELTPIAGSSEQYFYRNKMEFGFSDSKW 144 Query: 53 -----------HDGDDLYHIMFDQQTKERMRIDYFMPGSLLINAL-----------MIEM 90 + + + + ID NA+ + Sbjct: 145 LTLEQIKSDEVIEDRNALGFHIAGMWDKILDIDKCHLQRDPSNAIRNGIKEFATANNMAF 204 Query: 91 MATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQ 150 + LLR + + TS + + +V + + + + ++D + Sbjct: 205 YNARNQDGLLRTLMIR----TSSNGELMVLVQFFKEETENRELLLNYIKDTWPEITSLLY 260 Query: 151 LIGRA------NKTKICL-DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL 203 +I ++ IC RD++ E + L ++ SF Q N+ L + Sbjct: 261 VINSKGNDTIYDQEVICFSGRDHIFEEM----EGLKFKINAKSFYQTNSKQAYE-LYKIT 315 Query: 204 AATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261 G+ G+ + +LY G G + +A+ +V+ VE ++EAA+ N N + N + Sbjct: 316 RDFAGLSGNELVYDLYTGTGTIAQFVAKKARKVIGVEAVPDAIEAAKENAKLNGIENTEF 375 Query: 262 VRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHIL 319 K+ D I DPPR G+ V + + ++ Sbjct: 376 FVGDMKKVFN-----------TDFINTHGVPDIIITDPPRDGMHADVVQQIINISPEKVV 424 Query: 320 YISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 Y+SCN + RDL++L T+ + ++ D FP T H+E VLL ++ Sbjct: 425 YVSCNSATQARDLALLDDTYKVTKVQPVDMFPQTHHVENVVLLEKR 470 >gi|332087562|gb|EGI92690.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Shigella boydii 5216-82] Length = 433 Score = 242 bits (619), Expect = 5e-62, Method: Composition-based stats. Identities = 84/368 (22%), Positives = 142/368 (38%), Gaps = 30/368 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWH--DGDDLY 59 + Q K L ++M + ++ P YR RA + + L Sbjct: 89 GCQQQHASVDLQQRSKSAALARLM---KHEVSEVIADVPWGYRRRARLSLNYLPKTQQLQ 145 Query: 60 HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119 + + + + + AL+ ++ A + +R L ++ + + S ++ Sbjct: 146 MGFRKAGSSDIVDVKQCPILVPQLEALLPKVRACLGSLQAMRH-LGHVELVQATSGTLMI 204 Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179 L + L A RE R H+ + L + + E L Sbjct: 205 -LRHTAPLSSADREKLERFS---HSEGLDLYLAPDSEILETVSG-----EMPWYDSNGLR 255 Query: 180 YRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVE 238 F Q NAG+N M+ L + +L+L+CG GNF+L LA V+ VE Sbjct: 256 LTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVE 315 Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298 VE + N N + NV + +E + + F + +D Sbjct: 316 GVPALVEKGQQNARLNGLQNVTFYHENLEE------------DVTNQPWAKNGFDKVLLD 363 Query: 299 PPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHM 356 P R+G +++ P I+Y+SCNP +L RD ++L +TI RLA+ D FP+T H+ Sbjct: 364 PARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHL 423 Query: 357 ECGVLLVR 364 E VL R Sbjct: 424 ESMVLFSR 431 >gi|157157194|ref|YP_001464107.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia coli E24377A] gi|170018969|ref|YP_001723923.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia coli ATCC 8739] gi|193071100|ref|ZP_03052025.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli E110019] gi|256019428|ref|ZP_05433293.1| 23S rRNA 5-methyluridine methyltransferase [Shigella sp. D9] gi|293449111|ref|ZP_06663532.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli B088] gi|300820571|ref|ZP_07100722.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS 119-7] gi|300920362|ref|ZP_07136799.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS 115-1] gi|307312786|ref|ZP_07592416.1| RNA methyltransferase, TrmA family [Escherichia coli W] gi|309795251|ref|ZP_07689670.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS 145-7] gi|331669519|ref|ZP_08370365.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli TA271] gi|331678762|ref|ZP_08379436.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli H591] gi|331684405|ref|ZP_08384997.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli H299] gi|332280548|ref|ZP_08392961.1| 23S rRNA 5-methyluridine methyltransferase [Shigella sp. D9] gi|157079224|gb|ABV18932.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli E24377A] gi|169753897|gb|ACA76596.1| RNA methyltransferase, TrmA family [Escherichia coli ATCC 8739] gi|192955561|gb|EDV86039.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli E110019] gi|291322201|gb|EFE61630.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli B088] gi|300412625|gb|EFJ95935.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS 115-1] gi|300526835|gb|EFK47904.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS 119-7] gi|306907221|gb|EFN37727.1| RNA methyltransferase, TrmA family [Escherichia coli W] gi|308121222|gb|EFO58484.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS 145-7] gi|315062067|gb|ADT76394.1| 23S rRNA (uracil-5)-methyltransferase [Escherichia coli W] gi|320202429|gb|EFW76999.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia coli EC4100B] gi|323172912|gb|EFZ58543.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli LT-68] gi|323183324|gb|EFZ68721.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli 1357] gi|323377350|gb|ADX49618.1| RNA methyltransferase, TrmA family [Escherichia coli KO11] gi|331063187|gb|EGI35100.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli TA271] gi|331073592|gb|EGI44913.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli H591] gi|331078020|gb|EGI49226.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli H299] gi|332102900|gb|EGJ06246.1| 23S rRNA 5-methyluridine methyltransferase [Shigella sp. D9] Length = 433 Score = 242 bits (619), Expect = 5e-62, Method: Composition-based stats. Identities = 84/368 (22%), Positives = 141/368 (38%), Gaps = 30/368 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWH--DGDDLY 59 + Q K L ++M + ++ P YR RA + + L Sbjct: 89 GCQQQHASVDLQQRSKSAALARLM---KHEVSEVIADVPWGYRRRARLSLNYLPKTQQLQ 145 Query: 60 HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119 + + + + + AL+ ++ A + +R L ++ + + S ++ Sbjct: 146 MGFRKAGSSDIVDVKQCPILVPQLEALLPKVRACLGSLQAIRH-LGHVELVQATSGTLMI 204 Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179 L + L A RE R H+ + L + + E L Sbjct: 205 -LRHTAPLSSADREKLERFS---HSEGLDLYLAPDSEILETVSG-----EMPWYDSNGLR 255 Query: 180 YRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVE 238 F Q NAG+N M+ L + +L+L+CG GNF+L LA V+ VE Sbjct: 256 LTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVE 315 Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298 VE + N N + NV + +E + F + +D Sbjct: 316 GVPALVEKGQQNARLNGLQNVTFYHENLEE------------DVTKQPWAKNGFDKVLLD 363 Query: 299 PPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHM 356 P R+G +++ P I+Y+SCNP +L RD ++L +TI RLA+ D FP+T H+ Sbjct: 364 PARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHL 423 Query: 357 ECGVLLVR 364 E VL R Sbjct: 424 ESMVLFSR 431 >gi|325297416|ref|YP_004257333.1| RNA methyltransferase, TrmA family [Bacteroides salanitronis DSM 18170] gi|324316969|gb|ADY34860.1| RNA methyltransferase, TrmA family [Bacteroides salanitronis DSM 18170] Length = 474 Score = 242 bits (619), Expect = 5e-62, Method: Composition-based stats. Identities = 77/397 (19%), Positives = 146/397 (36%), Gaps = 57/397 (14%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFHIWHDG--------- 55 Y Q+ K ++ + I + ++YR + EF + Sbjct: 92 YADQIRYKQKQVYDNLTRIGKIELPEISPIIGSEKTMYYRNKLEFTFSNKRWLTEEEVKQ 151 Query: 56 DDLYHIMFDQQTK------ERMRIDYFMPGSLLINALMIEMMATIRLEPL----LRAK-- 103 D Y M + + I+ + N + + LR + Sbjct: 152 DVKYEQMNAVGFHIPGAFDKVLAIEKCWLQDDISNQIRNAIRDYAYEHQYAFFNLRTQEG 211 Query: 104 -LFQIDYLTSQSDQAIVTLIYHRLLDDA---WRECAIRLRDALHARKYQIQLIGRA---- 155 L + TS + + +V L + D+ +E + D + ++ Sbjct: 212 MLRNMMVRTSSTGELMVLLQCKIVNDEELEKMKELLQFVADKFPQITSLLYVVNNKCNDT 271 Query: 156 -NKTKICL--DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD 212 +C+ +D++ E + L ++ SF Q N+ + L V G+ G+ Sbjct: 272 IGDLDVCVFKGKDHIFEEM----EGLRFKVGPKSFYQTNSEQAYN-LYKVARDFAGLTGN 326 Query: 213 --LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270 + +LY G G + ++R +V+ +E ++E A+ N N + N K+ Sbjct: 327 ELVYDLYTGTGTIANFVSRQAKKVIGIEYVPEAIEDAKVNSELNGIKNTLFYAGDMKDIL 386 Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSL 328 +D R I DPPR+G+ + ++ A I+Y+SCNP + Sbjct: 387 T-----------EDFIRTHGRPDVIITDPPRAGMHGDVIQVILAAEPERIVYVSCNPATQ 435 Query: 329 CRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 RDL +L + ++ + D FP+T H+E VLL +K Sbjct: 436 ARDLQLLDVKYKVKAVQPVDMFPHTHHVENVVLLEKK 472 >gi|24114069|ref|NP_708579.1| 23S rRNA 5-methyluridine methyltransferase [Shigella flexneri 2a str. 301] gi|30064130|ref|NP_838301.1| 23S rRNA 5-methyluridine methyltransferase [Shigella flexneri 2a str. 2457T] gi|50401544|sp|Q83QD5|RUMA_SHIFL RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|24053196|gb|AAN44286.1| putative enzyme [Shigella flexneri 2a str. 301] gi|30042386|gb|AAP18111.1| putative enzyme [Shigella flexneri 2a str. 2457T] gi|281602145|gb|ADA75129.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Shigella flexneri 2002017] gi|313647845|gb|EFS12291.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Shigella flexneri 2a str. 2457T] gi|332753501|gb|EGJ83881.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Shigella flexneri 4343-70] gi|332753637|gb|EGJ84016.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Shigella flexneri K-671] gi|332754531|gb|EGJ84897.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Shigella flexneri 2747-71] gi|332765736|gb|EGJ95949.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Shigella flexneri 2930-71] gi|332999536|gb|EGK19121.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Shigella flexneri VA-6] gi|333000330|gb|EGK19913.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Shigella flexneri K-218] gi|333001142|gb|EGK20712.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Shigella flexneri K-272] gi|333015340|gb|EGK34680.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Shigella flexneri K-304] gi|333015781|gb|EGK35118.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Shigella flexneri K-227] Length = 433 Score = 242 bits (619), Expect = 5e-62, Method: Composition-based stats. Identities = 84/368 (22%), Positives = 142/368 (38%), Gaps = 30/368 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWH--DGDDLY 59 + Q K L ++M + ++ P YR RA + + L Sbjct: 89 GCQQQHASVDLQQRSKSAALARLM---KHDVSEVIADVPWGYRRRARLSLNYLPKTQQLQ 145 Query: 60 HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119 + + + + + + AL+ ++ A + +R L ++ + + S ++ Sbjct: 146 MGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMRH-LGHVELVQATSGTLMI 204 Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179 L + L A RE R H+ + L + + E L Sbjct: 205 -LRHTAPLSSADREKLERFS---HSEGLDLYLAPDSEILETVSG-----EMPWYDSNGLR 255 Query: 180 YRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVE 238 F Q NAG+N M+ L + +L+L+CG GNF+L LA V+ VE Sbjct: 256 LTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVE 315 Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298 VE + N N + NV + +E + F + +D Sbjct: 316 GVPALVEKGQQNARLNGLQNVTFYHENLEE------------DVTKQPWAKNGFDKVLLD 363 Query: 299 PPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHM 356 P R+G +++ P I+Y+SCNP +L RD ++L +TI RLA+ D FP+T H+ Sbjct: 364 PARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHL 423 Query: 357 ECGVLLVR 364 E VL R Sbjct: 424 ESMVLFSR 431 >gi|27364943|ref|NP_760471.1| 23S rRNA m(5)U1939 methyltransferase [Vibrio vulnificus CMCP6] gi|320155330|ref|YP_004187709.1| 23S rRNA (Uracil-5-) -methyltransferase RumA [Vibrio vulnificus MO6-24/O] gi|50401570|sp|Q8DC67|RUMA_VIBVU RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|27361089|gb|AAO09998.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio vulnificus CMCP6] gi|319930642|gb|ADV85506.1| 23S rRNA (Uracil-5-) -methyltransferase RumA [Vibrio vulnificus MO6-24/O] Length = 438 Score = 242 bits (619), Expect = 5e-62, Method: Composition-based stats. Identities = 87/374 (23%), Positives = 145/374 (38%), Gaps = 36/374 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEP-----IHYRMRAEFHIWHDGD 56 + Y+ QLA K L Q+M F +I S P YR RA + D Sbjct: 90 GCDMQHMDYQAQLAYKQRTLLQLMKKFSGS--EILLSPPVTGLEKAYRRRARVSLMWD-K 146 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRA--KLFQIDYLTSQS 114 + F + K+ +I+ +L+ L + + + L ++ + + + Sbjct: 147 KSRQLQFGFRRKQSKQIENVTQCPVLVAELECLLPELKAILSHFQHPEHLGHVELVAADN 206 Query: 115 DQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANK-TKICLDRDYVDERLTV 173 I LLD E +LR + + L+ +++ +I + Y E Sbjct: 207 GAVITLRHTGPLLD----EDVAKLRQCAEQHQATLYLMPASDQLERISGEAPYYQEI--- 259 Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFD 232 N+F Q N +N M+ L D +L+L+CG GNFSL +A Sbjct: 260 ---GFKVPFEPNNFIQVNQKVNQQMVVQALEWLDPQSSDRVLDLFCGLGNFSLPIASKAK 316 Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292 V VE V+ A N + N +NN + + ++ S +F Sbjct: 317 SVTGVEGVDEMVQKAAINASLNQINNAQFFHANLEQ------------DFVGQPWASEKF 364 Query: 293 KTIFVDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDL-SILSTTHTIERLALFDQF 350 I +DP R+G + ++Y+SCNP +L RD S+L + + +L + D F Sbjct: 365 DKILLDPARAGASGIIEQVSALGAKRVVYVSCNPATLARDSQSLLEQGYRLTKLGMLDMF 424 Query: 351 PYTRHMECGVLLVR 364 PYT H+E L + Sbjct: 425 PYTSHLESMALFEK 438 >gi|329769977|ref|ZP_08261374.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Gemella sanguinis M325] gi|328837537|gb|EGF87164.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Gemella sanguinis M325] Length = 452 Score = 242 bits (619), Expect = 5e-62, Method: Composition-based stats. Identities = 78/383 (20%), Positives = 147/383 (38%), Gaps = 38/383 (9%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQ---VPN---LQIFRSEPI-HYRMRAEFHIWHDGDD 57 L YE+QL K + L + P+ L+ S HYR + +F + Sbjct: 86 LAHVSYEKQLEYKRNILLDAFDKYYRIPKPDKLVLKTLASPTTEHYRNKNQFPLAVRNGR 145 Query: 58 LYHIMFDQQTKERMRIDYFMPGSL---LINALMIEMMATIRLEPLLRAKLFQIDYLTSQS 114 + ++ + T E + I+ + I AL + + ++ K + + Y+ +++ Sbjct: 146 VIAGLYKEGTNELVEINEDIALHENGNKITALAKKCLGKYKVAISTNKKNYGVKYIATRT 205 Query: 115 ----DQAIVTLIYH----RLLDDAWRECAIR--LRDALHARKYQIQLIGRANKTKICLDR 164 +T + + + LD E ++ + + ++ Sbjct: 206 SFYNGDVQLTFVANTDKIKNLDKVVNEIKRERIVKSIILNVTNDNDHLVMGSENITLYGA 265 Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNF 223 DY+ E++ + Y SF Q N + + V+ + D+ L+ +CG G Sbjct: 266 DYIVEKIG----DIKYELSAKSFFQLNPLATKKLYDKVVEFANLKETDVVLDAFCGVGTI 321 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 ++ V V+I +++ A N+ N++ N V + + ++ Sbjct: 322 GQYVSSKCKEVYGVDIVSDAIKDANDNVKLNNLTNCTYVAGDANKIVPRWKK-------- 373 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSILSTTHTIE 342 F VDPPR GL ++ I+Y+SCNP +L RDL +L+ + I Sbjct: 374 ----KGINFDVAIVDPPRVGLGHLAKNLLNVDAKKIVYVSCNPSTLARDLKVLTRKYKIR 429 Query: 343 RLALFDQFPYTRHMECGVLLVRK 365 R+ D FP T +E V L RK Sbjct: 430 RIQPVDMFPGTAAVEAVVELTRK 452 >gi|324119827|gb|EGC13706.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli E1167] Length = 433 Score = 242 bits (619), Expect = 5e-62, Method: Composition-based stats. Identities = 84/368 (22%), Positives = 141/368 (38%), Gaps = 30/368 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWH--DGDDLY 59 + Q K L ++M + ++ P YR RA + + L Sbjct: 89 GCQQQHASVDLQQRSKSAALARLM---KHDVSEVIADVPWGYRRRARLSLNYLPKTQQLQ 145 Query: 60 HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119 + + + + + AL+ ++ A + +R L ++ + + S ++ Sbjct: 146 MGFRKAGSSDIVDVKQCPILVPQLEALLPKVRACLGSLQAIRH-LGHVELVQATSGTLMI 204 Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179 L + L A RE R H+ + L + + E L Sbjct: 205 -LRHTAPLSSADREKLERFS---HSEGLDLYLAPDSEILETVSG-----EMPWYDSNGLR 255 Query: 180 YRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVE 238 F Q NAG+N M+ L + +L+L+CG GNF+L LA V+ VE Sbjct: 256 LTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVE 315 Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298 VE + N N + NV + +E + F + +D Sbjct: 316 GVPALVEKGQQNARLNGLQNVTFYHENLEE------------DVTKQPWAKNGFDKVLLD 363 Query: 299 PPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHM 356 P R+G +++ P I+Y+SCNP +L RD ++L +TI RLA+ D FP+T H+ Sbjct: 364 PARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHL 423 Query: 357 ECGVLLVR 364 E VL R Sbjct: 424 ESMVLFSR 431 >gi|331654268|ref|ZP_08355268.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli M718] gi|331047650|gb|EGI19727.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli M718] Length = 433 Score = 242 bits (619), Expect = 5e-62, Method: Composition-based stats. Identities = 85/368 (23%), Positives = 141/368 (38%), Gaps = 30/368 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWH--DGDDLY 59 + Q K L ++M + ++ P YR RA + + L Sbjct: 89 GCQQQHASVDLQQRSKSAALARLM---KHEVSEVIADVPWGYRRRARLSLNYLPKTQQLQ 145 Query: 60 HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119 + E + + + AL+ ++ A + +R L ++ + + S ++ Sbjct: 146 MGFRKAGSSEIVDVKQCPILVPQLEALLPKVRACLGSLQAMRH-LGHVELVQATSGTLMI 204 Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179 L + L A RE R H+ + L + + E L Sbjct: 205 -LRHTAPLSSADREKLERFS---HSEGLDLYLAPDSEILETVSG-----EMPWYDSNGLR 255 Query: 180 YRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVE 238 F Q NAG+N M+ L + +L+L+CG GNF+L LA V+ VE Sbjct: 256 LTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVE 315 Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298 VE + N N + NV + +E + F + +D Sbjct: 316 GVSALVEKGQQNARLNGLQNVTFYHENLEE------------DVTKQPWAKNGFDKVLLD 363 Query: 299 PPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHM 356 P R+G +++ P I+Y+SCNP +L RD ++L +TI RLA+ D FP+T H+ Sbjct: 364 PARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHL 423 Query: 357 ECGVLLVR 364 E VL R Sbjct: 424 ESMVLFSR 431 >gi|215488102|ref|YP_002330533.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia coli O127:H6 str. E2348/69] gi|312964949|ref|ZP_07779189.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli 2362-75] gi|215266174|emb|CAS10600.1| 23S rRNA (uracil-5)-methyltransferase [Escherichia coli O127:H6 str. E2348/69] gi|312290505|gb|EFR18385.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli 2362-75] gi|323188799|gb|EFZ74084.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli RN587/1] Length = 433 Score = 242 bits (619), Expect = 5e-62, Method: Composition-based stats. Identities = 84/368 (22%), Positives = 141/368 (38%), Gaps = 30/368 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWH--DGDDLY 59 + Q K L ++M + ++ P YR RA + + L Sbjct: 89 GCQQQHASVDLQQRSKSAALARLM---KHEVSEVIADVPWGYRRRARLSLNYLPKTQQLQ 145 Query: 60 HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119 + + + + + AL+ ++ A + +R L ++ + + S ++ Sbjct: 146 MGFRKAGSSDIVDVKQCPILVPQLEALLPKVRACLGSLQAMRH-LGHVELVQATSGTLMI 204 Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179 L + L A RE R H+ + L + + E L Sbjct: 205 -LRHTAPLSSADREKLERFS---HSEGLDLYLAPDSEILETVSG-----EMPWYDSNGLR 255 Query: 180 YRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVE 238 F Q NAG+N M+ L + +L+L+CG GNF+L LA V+ VE Sbjct: 256 LTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVE 315 Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298 VE + N N + NV + +E + F + +D Sbjct: 316 GVPALVEKGQQNARLNGLQNVTFYHENLEE------------DVTKQPWAKNGFDKVLLD 363 Query: 299 PPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHM 356 P R+G +++ P I+Y+SCNP +L RD ++L +TI RLA+ D FP+T H+ Sbjct: 364 PARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHL 423 Query: 357 ECGVLLVR 364 E VL R Sbjct: 424 ESMVLFSR 431 >gi|317056338|ref|YP_004104805.1| TrmA family RNA methyltransferase [Ruminococcus albus 7] gi|315448607|gb|ADU22171.1| RNA methyltransferase, TrmA family [Ruminococcus albus 7] Length = 453 Score = 242 bits (618), Expect = 5e-62, Method: Composition-based stats. Identities = 74/388 (19%), Positives = 141/388 (36%), Gaps = 40/388 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFR----SEPIHYRMRAEFHIWHDGDD 57 + YE + K +R + + + YR +A++ + D Sbjct: 82 GCSFRHISYEAECRAKDKFIRDSFDRIGKLSPEYMEFCGCKDTDLYRNKAQYPVADDNGK 141 Query: 58 LYHIMFDQQTKERMRIDYFMPGSLL-----------INALMIEMMATIRLEPLLRAKLFQ 106 + +++ + ++ +N I I L LLR + Sbjct: 142 AVCGFYAKRSHRVVEYTRCRLQPVIFSEIVEFIMGYVNDRHIPAYNEISLTGLLRHIYLR 201 Query: 107 IDYLTSQSDQAIVTLIYHR-----LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161 + + +V + L +E +R + + + ++ K Sbjct: 202 RGAYSGEIMVCLVVTDLKKASVFDKLAILLKEKFSDIRTVVLNENPKNTNVILGSRMKAI 261 Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220 + +++ + + SF Q N + + A LL+LYCG Sbjct: 262 VGDGTINDTMCGNNIS----ISPLSFYQVNTHQAELLYKKAGEFAQLSHDSTLLDLYCGT 317 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G L +AR +++ VE+ + +++ A+ N AN + N + + + + Q + E Sbjct: 318 GTIGLSMARQVKKLIGVEVIQAAIDNAKANAKANDITNTEFICGDAGKIAQVLYERGE-- 375 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILST- 337 R I DP R G D A++ + I+ ISCN + RD +IL+ Sbjct: 376 ----------RPDVIIADPARKGCDRASLEYMAKMSPDRIVMISCNHTTAARDCAILAEL 425 Query: 338 THTIERLALFDQFPYTRHMECGVLLVRK 365 +T +++ FD FP T H+E VLL RK Sbjct: 426 GYTCDKVMGFDLFPRTSHVETVVLLSRK 453 >gi|170077182|ref|YP_001733820.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Synechococcus sp. PCC 7002] gi|169884851|gb|ACA98564.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Synechococcus sp. PCC 7002] Length = 452 Score = 242 bits (618), Expect = 6e-62, Method: Composition-based stats. Identities = 82/383 (21%), Positives = 151/383 (39%), Gaps = 50/383 (13%) Query: 8 DQYEQQLAEKVDRLRQMML---AFQVPNLQIFRSE--PIHYRMRAEFHIWHDG--DDLYH 60 D +QQ+ K + ++Q + FQ ++Q S P+ YR +A + + ++ Sbjct: 87 DSLQQQV--KTNEIQQALQRIGGFQDLDIQPILSGDGPLSYRNKATYPLGRSSSMGNVQA 144 Query: 61 IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-----------LRAKLFQIDY 109 + + + + + ++ +N L+ + I+ + LR +I Sbjct: 145 GYYRKGSHQLINLNQCPVQDSRLNPLLENVKIDIQNQGWSIYNETKHQGKLRHLALRIGQ 204 Query: 110 LTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD 165 T + +++ LI + W E L + + + TK R Sbjct: 205 RTGEMLLTLISTSGDLINLETQAETWLEEYPGLVGVCLNENPKKGNLIWGDTTKAIAGRP 264 Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNF 223 Y++E L + +F Q N +L + G+ L++ YCG G F Sbjct: 265 YLEEIFA----GLTLKLRPETFFQVNTSAAEALL-TAITQQLTFTGEEILVDAYCGVGTF 319 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 +L LA+ + + +E+ S++ A N N ++NV+ + + ++ Sbjct: 320 TLPLAKKVQQAIGIEVQASSIQQAWENAHHNDIHNVEFYAGTVESILPSL---------- 369 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILSTT--H 339 + +DPPR G D + + I+YISCNP +L RDL L T + Sbjct: 370 -----DVTADIVLLDPPRKGCDRQVLDALLHSKPKQIVYISCNPATLARDLKHLCATQQY 424 Query: 340 TIERLALFDQFPYTRHMECGVLL 362 I+ + D FP T H+EC VLL Sbjct: 425 QIQWVQPADFFPQTPHVECAVLL 447 >gi|239617809|ref|YP_002941131.1| RNA methyltransferase, TrmA family [Kosmotoga olearia TBF 19.5.1] gi|239506640|gb|ACR80127.1| RNA methyltransferase, TrmA family [Kosmotoga olearia TBF 19.5.1] Length = 440 Score = 242 bits (618), Expect = 6e-62, Method: Composition-based stats. Identities = 84/377 (22%), Positives = 159/377 (42%), Gaps = 40/377 (10%) Query: 9 QYEQQLAEKVDRLRQMMLA----FQVPNLQIFRSEPI-HYRMRAEFHIWHDGDDLYHIMF 63 QY QL K +++ +++P+ ++ S+ HYR R E+ + G + M+ Sbjct: 82 QYSNQLLWKKRIVQEQFRRVGKFYELPDFEMIPSKKTNHYRNRMEYVAYQKGKKIGFGMY 141 Query: 64 DQQTKERMRIDYFMPGSL---LINALMIEMMATIRLEPLLR----AKLFQIDYLTSQSDQ 116 + + E + ++ G + E+++ ++P R L + +++ Sbjct: 142 KRFSNEVVDVEDCDLGYEGFGKVRRTFEEILSRFGVKPYNRESKRGFLKHLVLRGNRNGD 201 Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKT------KICLDRDYVDER 170 + LI R + + +++ L + + + ++ + E Sbjct: 202 IVALLITKRESFPEIDKISREVKEQLPEVTSLVHVFNSRDDVVLRGPYRVIYGEGIITET 261 Query: 171 LTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLAR 229 L A +++ SF Q N + +L++V + L+LY G G F+ AR Sbjct: 262 LGDA----VFQVPPVSFFQANVFVMEELLKYVQQELNPSPSETFLDLYSGIGTFAFYFAR 317 Query: 230 HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHS 289 F +V+AVE K S A N N ++N++ V M +++F + Sbjct: 318 MFKKVVAVEGIKISSRAMLSNARINMISNLEAVNMDTRDFLEKNEE-------------- 363 Query: 290 YRFKTIFVDPPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDLSILS-TTHTIERLALF 347 +F + +DPPR+G+ + +A P I+YISCNP +L RD LS +++ L F Sbjct: 364 -KFDKVILDPPRAGIGKDIELIGKALPKRIVYISCNPTTLARDSRYLSNKGFSLKALRAF 422 Query: 348 DQFPYTRHMECGVLLVR 364 D FP T H+E + R Sbjct: 423 DMFPDTHHVEVVAIFNR 439 >gi|191168556|ref|ZP_03030341.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli B7A] gi|190901403|gb|EDV61167.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli B7A] Length = 433 Score = 242 bits (618), Expect = 6e-62, Method: Composition-based stats. Identities = 84/368 (22%), Positives = 141/368 (38%), Gaps = 30/368 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWH--DGDDLY 59 + Q K L ++M + ++ P YR RA + + L Sbjct: 89 GCQQQHASVDLQQRSKSAALARLM---KHEVSEVIADVPWGYRRRARLSLNYLPKTQQLQ 145 Query: 60 HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119 + + + + + AL+ ++ A + +R L ++ + + S ++ Sbjct: 146 MGFRKAGSSDIVDVKQCPILVPQLEALLPKVRACLGSLQAIRH-LGHVELVQATSGTLMI 204 Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179 L + L A RE R H+ + L + + E L Sbjct: 205 -LRHTAPLSSADREKLERFS---HSEGLALYLAPDSEILETVSG-----EMPWYDSNGLR 255 Query: 180 YRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVE 238 F Q NAG+N M+ L + +L+L+CG GNF+L LA V+ VE Sbjct: 256 LTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVE 315 Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298 VE + N N + NV + +E + F + +D Sbjct: 316 GVPALVEKGQQNARLNGLQNVTFYHENLEE------------DVTKQPWAKNGFDKVLLD 363 Query: 299 PPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHM 356 P R+G +++ P I+Y+SCNP +L RD ++L +TI RLA+ D FP+T H+ Sbjct: 364 PARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHL 423 Query: 357 ECGVLLVR 364 E VL R Sbjct: 424 ESMVLFSR 431 >gi|297835104|ref|XP_002885434.1| RNA methyltransferase family protein [Arabidopsis lyrata subsp. lyrata] gi|297331274|gb|EFH61693.1| RNA methyltransferase family protein [Arabidopsis lyrata subsp. lyrata] Length = 559 Score = 242 bits (618), Expect = 6e-62, Method: Composition-based stats. Identities = 74/423 (17%), Positives = 144/423 (34%), Gaps = 78/423 (18%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQV-----PNLQIFRSE------PIHYRMRAEFH 50 YE QL K +++ +++ P L+I +YR + EF Sbjct: 145 GCKTQNLSYEAQLKAKEEQVHELIRHVGRFSDNNPGLEIVLKPIVACDIQFNYRNKMEFS 204 Query: 51 IWHDGDDLYHIMFDQQT---------------KERMRIDYFMPGSLLINALMIEMMATIR 95 ++ +++ + + +D + S N ++ + R Sbjct: 205 FGPQRWLPIEMLHEKEDGPKNFALGLHAPGFFDKVLNVDKCLLQSEPGNLVLAAVQDCWR 264 Query: 96 LEPL-------------LRAKLFQID-YLTSQSDQAIVTLIYHRLLDDAWRECAIRL--- 138 L L+ + + + + S + +V + + + R+ Sbjct: 265 DPALSLSPYNCRSHVGFLKHLMLRTGRNVETGSLELMVNFVTSSYEPELLKPLVDRISSI 324 Query: 139 ---RDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGIN 195 ++ + K +D + E L R L ++ NSF Q N Sbjct: 325 PQVVSIMNNVNSSVGNTSVGEKEYTLYGKDTITEVL----RGLTFQISANSFFQTNTHQA 380 Query: 196 VHMLEWVLAATKGIQGD----LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251 +L ++ + G++GD +L+L+CG G L LAR + E+ ++ A N Sbjct: 381 E-VLYKLIEESAGLKGDGSEVVLDLFCGTGTIGLTLARRAKHIYGYEVVPQAITDAHKNA 439 Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD--DATV 309 N + N ++ + + D + + + DP R G+ Sbjct: 440 QINGIENATFIQGDLNKIGE------------DFGNNFPKPDIVISDPNRPGMHMKLIKF 487 Query: 310 GMVQAYPHILYISCNPDSLCRDLSILSTT---------HTIERLALFDQFPYTRHMECGV 360 + P I+Y+SCNP + RDL L + + + D FP+T H+EC Sbjct: 488 LLKLKSPRIIYVSCNPATCARDLDYLCHGVEEKNIKGCYKLMSVQPVDMFPHTPHIECVC 547 Query: 361 LLV 363 L Sbjct: 548 FLE 550 >gi|15674161|ref|NP_268336.1| hypothetical protein L37880 [Lactococcus lactis subsp. lactis Il1403] gi|50401786|sp|Q9CDP0|YWFF_LACLA RecName: Full=Uncharacterized RNA methyltransferase ywfF gi|12725241|gb|AAK06277.1|AE006446_9 hypothetical protein L37880 [Lactococcus lactis subsp. lactis Il1403] Length = 513 Score = 242 bits (618), Expect = 6e-62, Method: Composition-based stats. Identities = 72/405 (17%), Positives = 139/405 (34%), Gaps = 55/405 (13%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNL-------QIFRSEPIHYRMRAEFHIWH-DGD 56 ++ Y QL K D +RQ + ++ + + YR + +F + + Sbjct: 85 IMHLSYPMQLEFKRDVMRQALEKYKPAGWRNYELRATLGMENTLGYRNKLQFQVRRLNDG 144 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----------LRAKLFQ 106 + ++ + T + +D + ++ + I L +R + + Sbjct: 145 TVIAGLYQEGTHHLVNLDNCLVQDPKTQEIINHICRLIEKFDLPVYDERKIGGIRTVMVR 204 Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWRECAI------------------RLRDALHARKYQ 148 T + VT L W E L + Sbjct: 205 RSQKTGEVQIIFVTSTPIILDGQVWPELREEPSKRQKNSFVKFDKMLSALTEEFEEIVTV 264 Query: 149 IQLIGRANKTKICLDRDYV----DERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVL 203 ++I +R + E +T + +F Q N+ + E V Sbjct: 265 AVNFHPRKTSEIYGERTQILFNEKETITEGVLDYEFELSPRAFYQLNSEQANVLYGEAVK 324 Query: 204 AATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVR 263 A +++ YCG G +A+ V ++I S+ AR N + N Sbjct: 325 ALNPKKDDRVIDAYCGVGTIGFAVAKKVKSVHGMDITPESIFDARENAKRLGLKNCHYEI 384 Query: 264 MSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYI 321 ++ + +R + VDPPR+GLDDA + + +P ++Y+ Sbjct: 385 GKAERIIPNWNK------------SGHRATAMIVDPPRTGLDDALLETITKFPPEKMVYV 432 Query: 322 SCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRKP 366 SCN +L +DL +L+ + +E + D FP+T E V L ++ Sbjct: 433 SCNVSTLAKDLVVLANFYKVEYIQSVDMFPHTARTEAVVKLTKRD 477 >gi|326407755|gb|ADZ64826.1| uracil-5-23S rRNA methyltransferase RumA [Lactococcus lactis subsp. lactis CV56] Length = 513 Score = 242 bits (618), Expect = 6e-62, Method: Composition-based stats. Identities = 72/405 (17%), Positives = 139/405 (34%), Gaps = 55/405 (13%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNL-------QIFRSEPIHYRMRAEFHIWH-DGD 56 ++ Y QL K D +RQ + ++ + + YR + +F + + Sbjct: 85 IMHLSYPMQLEFKHDVMRQALEKYKPAGWRNYELRATLGMENTLGYRNKLQFQVRRLNDG 144 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----------LRAKLFQ 106 + ++ + T + +D + ++ + I L +R + + Sbjct: 145 TVIAGLYQEGTHHLVNLDNCLVQDPKTQEIINHICRLIEKFDLPVYDERKIGGIRTVMVR 204 Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWRECAI------------------RLRDALHARKYQ 148 T + VT L W E L + Sbjct: 205 RSQKTGEVQIIFVTSTPIILDGQVWPELREEPSKRQKNSFVKFDKMLSALTEEFEEIVTV 264 Query: 149 IQLIGRANKTKICLDRDYV----DERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVL 203 ++I +R + E +T + +F Q N+ + E V Sbjct: 265 AVNFHPRKTSEIYGERTQILFNEKETITEGVLDYEFELSPRAFYQLNSEQANVLYGEAVK 324 Query: 204 AATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVR 263 A +++ YCG G +A+ V ++I S+ AR N + N Sbjct: 325 ALNPKKDDRVIDAYCGVGTIGFAVAKKVKSVHGMDITPESIFDARENAKRLGLKNCHYEI 384 Query: 264 MSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYI 321 ++ + +R + VDPPR+GLDDA + + +P ++Y+ Sbjct: 385 GKAERIIPNWNK------------SGHRATAMIVDPPRTGLDDALLETITKFPPEKMVYV 432 Query: 322 SCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRKP 366 SCN +L +DL +L+ + +E + D FP+T E V L ++ Sbjct: 433 SCNVSTLAKDLVVLANYYKVEYIQSVDMFPHTARTEAVVKLTKRD 477 >gi|320182397|gb|EFW57294.1| 23S rRNA 5-methyluridine methyltransferase [Shigella boydii ATCC 9905] Length = 433 Score = 242 bits (618), Expect = 6e-62, Method: Composition-based stats. Identities = 84/368 (22%), Positives = 142/368 (38%), Gaps = 30/368 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWH--DGDDLY 59 + Q K L ++M + ++ P YR RA + + L Sbjct: 89 GCQQQHASVDLQQRSKSAALARLM---KHEVSEVIADVPWGYRRRARLSLNYLPKTQQLQ 145 Query: 60 HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119 + + + + + AL+ ++ A + +R L ++ + + S ++ Sbjct: 146 MGFRKAGSSDIVDVKQCPILVPQLEALLPKVRACLGSLQAMRH-LGHVELVQATSGTLMI 204 Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179 L + L A RE R H+ + L + + E L Sbjct: 205 -LRHTAPLSSADREKLERFS---HSEGLDLYLAPDSEILETVSG-----EMPWYDSNGLR 255 Query: 180 YRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVE 238 F Q NAG+N M+ L + +L+L+CG GNF+L LA V+ VE Sbjct: 256 LTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVE 315 Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298 VE + N N + NV + +E + + F + +D Sbjct: 316 GVPALVEKGQQNARLNGLQNVTFYHENLEE------------DVTNQPWAKNGFDKVLLD 363 Query: 299 PPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHM 356 P R+G +++ P I+Y+SCNP +L RD ++L +TI RLA+ D FP+T H+ Sbjct: 364 PARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHL 423 Query: 357 ECGVLLVR 364 E VL R Sbjct: 424 ESMVLFSR 431 >gi|320173231|gb|EFW48441.1| 23S rRNA 5-methyluridine methyltransferase [Shigella dysenteriae CDC 74-1112] Length = 433 Score = 242 bits (618), Expect = 6e-62, Method: Composition-based stats. Identities = 85/368 (23%), Positives = 143/368 (38%), Gaps = 30/368 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWH--DGDDLY 59 + Q K L ++M ++V ++ P YR RA + + L Sbjct: 89 GCQQQHASVDLQQRSKSAALARLM-KYEVS--EVIADVPWGYRRRARLSLNYLPKTQQLQ 145 Query: 60 HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119 + + + + + AL+ ++ A + +R L ++ + + S ++ Sbjct: 146 MGFRKAGSSDIVDVKQCPILVPQLEALLPKVRACLGSLQAMRH-LGHVELVQATSGTLMI 204 Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179 L + L A RE R H+ + L + + E L Sbjct: 205 -LRHTAPLSSADREKLERFS---HSEGLDLYLAPDSEILETVSG-----EMPWYDSNGLR 255 Query: 180 YRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVE 238 F Q NAG+N M+ L + +L+L+CG GNF+L LA V+ VE Sbjct: 256 LTFSPRDFIQVNAGVNQKMVASALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVE 315 Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298 VE + N N + NV + +E + F + +D Sbjct: 316 GVPALVEKGQQNARLNGLQNVTFYHENLEE------------DVTKQPWAKNGFDKVLLD 363 Query: 299 PPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHM 356 P R+G +++ P I+Y+SCNP +L RD ++L +TI RLA+ D FP+T H+ Sbjct: 364 PARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHL 423 Query: 357 ECGVLLVR 364 E VL R Sbjct: 424 ESMVLFSR 431 >gi|311747752|ref|ZP_07721537.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Algoriphagus sp. PR1] gi|311302702|gb|EFQ79251.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Algoriphagus sp. PR1] Length = 468 Score = 242 bits (618), Expect = 6e-62, Method: Composition-based stats. Identities = 80/402 (19%), Positives = 149/402 (37%), Gaps = 53/402 (13%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEF------- 49 YE Q K ++ + + +YR + +F Sbjct: 83 GCKWQHINYELQKNYKRQQVLDQFQRIAKVETPEISPIVGSEKTTYYRNKLDFTFSNKKW 142 Query: 50 ----HIWHDGDDLYHIMFDQQTK---ERMRIDYFMPGSLLINALMIEMMATIRLEPL--- 99 I + + + + K + + +D+ + N + E+ A L Sbjct: 143 LTLEQIQSEDEFDRNALGFHIPKMFDKIVDVDHCYLQGGISNDVRNELRAFALENELSFY 202 Query: 100 -LR---AKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIG-R 154 +R L + T+ + Q +V + + + + L+ + +I + Sbjct: 203 DIRNQVGLLRNLIIRTTSTGQTMVIVQFGESDLELIPKVMEFLKIRFPEITSLLYVINTK 262 Query: 155 ANKTKICL------DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKG 208 N+T L Y++E + L +R SF Q N+ L + Sbjct: 263 GNETFHDLELVTYAGLPYIEEEM----EGLKFRIGPKSFYQTNSEQAYE-LYKITRDFAE 317 Query: 209 IQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266 ++GD + +LY G G + +A+ +V+ VE + ++ A+ N N + N Sbjct: 318 LKGDEIVYDLYTGTGTIANFVAKKAKQVIGVEYVEAAIADAKINSQINGIENTLFYAGDM 377 Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCN 324 KE + + I DPPR+G+D+ V M+ A P I+Y+SCN Sbjct: 378 KEILND-----------EFIENHAAPDVIITDPPRAGMDEKVVQMLLKLAAPKIVYVSCN 426 Query: 325 PDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRKP 366 P + RDL++L + ++++ D FP T H+E VLL K Sbjct: 427 PATQARDLALLGEKYDVQKVQPVDMFPQTYHVENVVLLTLKK 468 >gi|261211546|ref|ZP_05925834.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Vibrio sp. RC341] gi|260839501|gb|EEX66127.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Vibrio sp. RC341] Length = 440 Score = 242 bits (618), Expect = 6e-62, Method: Composition-based stats. Identities = 87/372 (23%), Positives = 149/372 (40%), Gaps = 30/372 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFR---SEPIHYRMRAEFHIWHDGD-- 56 L Q+ K L Q+M+ F +L + S+ YR RA + D Sbjct: 90 GCDLQHLDRAGQINHKQQALSQLMVKFAGQSLALSAPVCSDDQGYRRRARLSLMWDKKTQ 149 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116 L +Q+K + + + +NAL+ E+ T+ + L ++ + + Sbjct: 150 QLQFGFRRKQSKAIVNVTHCPVLEPSLNALLPEL-NTLLSQWSQPELLGHVELVKGDNTP 208 Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGR 176 +V R L + L D + + L A + E Sbjct: 209 VLVL----RHLGVLAEQDRQSLSDFATQKGLTLYLTLEAGALQHVQGESPYCEETGSCL- 263 Query: 177 TLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVL 235 R + N F Q N +N M+E L Q +L+L+CG GNF+L LA V+ Sbjct: 264 ----RFLPNHFIQVNRSVNQQMVEQALNWLEVNKQDRVLDLFCGLGNFTLPLAAQAQEVV 319 Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295 +E + V+ A +N N +NNV + + ++ + + +F + Sbjct: 320 GIEGVEEMVQHATHNAKLNQINNVAFYQANLEQ------------DMTNASWAQQKFAKV 367 Query: 296 FVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYT 353 +DP R+G + + ++Y+SCNP +L RD S+LS +E+L + D FP+T Sbjct: 368 LLDPARAGAEGIVDQLAALGAERVVYVSCNPATLARDSQSLLSQGFHLEKLGMLDMFPHT 427 Query: 354 RHMECGVLLVRK 365 H+E L V+K Sbjct: 428 SHLESMALFVKK 439 >gi|119483398|ref|ZP_01618812.1| 23S rRNA methyltransferase/RumA [Lyngbya sp. PCC 8106] gi|119458165|gb|EAW39287.1| 23S rRNA methyltransferase/RumA [Lyngbya sp. PCC 8106] Length = 466 Score = 242 bits (618), Expect = 6e-62, Method: Composition-based stats. Identities = 73/402 (18%), Positives = 144/402 (35%), Gaps = 58/402 (14%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAF----QVPNLQIFRSEPI-HYRMRAEFHIWHDG- 55 Y+ QL K + + Q + Q P I S + +YR +A + + Sbjct: 84 GCQWQHIDYDAQLTTKQNLVVQALEHIGGFSQPPVSPILPSPSLLNYRNKATYPLSRSST 143 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKL 104 + + + + + ++ I + + + ++R Sbjct: 144 GQVRAGYYQKGSHRLINLNQCPVQDENLDPFLANIKQDIQDQGWSIYNERQHQGIIRHLS 203 Query: 105 FQIDYLTSQSDQAIVTLIYHRLLDDA---WRECAIRLRDALHARKYQIQLIGRANKTKIC 161 +I T + ++ L++ W + +L + +KT Sbjct: 204 LRIGRRTGEILLTLIATRSLPRLEEQAETWLQQYPQLVGVCLNINPNQTNVIFGDKTHCV 263 Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCG 219 + ++ E L + +F Q N +L V+ +QG +++ YCG Sbjct: 264 KGQGFLREEFA----GLTFNLTPETFFQVNTEAAETVL-KVIQQQLNLQGSEMIIDAYCG 318 Query: 220 NGNFSLVLARHF------------DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267 G +L +A+H +V+ +E+ +++ A N N ++NV + + Sbjct: 319 IGTLTLPIAKHIQLLASSPEKNSQKQVIGIEVQPSAIQQAYQNAGLNGIDNVTFETGTVQ 378 Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNP 325 + S + I +DPPR G D + +++ P I+Y+SC P Sbjct: 379 KVLSRF---------------SLKPDIILLDPPRKGCDRQVLESLLKLQPTQIVYMSCKP 423 Query: 326 DSLCRDLSILSTT--HTIERLALFDQFPYTRHMECGVLLVRK 365 +L RDL IL + + ++ D FP T H+EC L K Sbjct: 424 ATLARDLKILCENGFYHLTQVQPVDFFPQTPHVECVAFLEAK 465 >gi|313113178|ref|ZP_07798804.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Faecalibacterium cf. prausnitzii KLE1255] gi|310624517|gb|EFQ07846.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Faecalibacterium cf. prausnitzii KLE1255] Length = 456 Score = 242 bits (618), Expect = 7e-62, Method: Composition-based stats. Identities = 77/390 (19%), Positives = 135/390 (34%), Gaps = 43/390 (11%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ----VPNLQIFRSEPIHYRMRAEFHIWHDG-D 56 +L Y +L K + + + E YR + +F + D Sbjct: 82 GCSLRHLDYAAELRAKQENVADAFARIGGLDVPVLPIVGSPEVNRYRNKVQFPVGVDKSG 141 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATI-------RLEPLLRAKLFQIDY 109 + +T + ++N + + A E R + I Sbjct: 142 KPCIGFYAGRTHRIVPCPDCRLQPGVLNEIGNALCAFFAEKGIQPYSEETGRGLVRHIFL 201 Query: 110 LTS-QSDQAIVTLIYHRLLDDAWRECAIRLRDA-------LHARKYQIQLIGRANKTKIC 161 S Q +V L+ R + E RL+ L + + +T Sbjct: 202 RRGAHSGQIMVCLVCTRAKLPSAEELCTRLKAQFAEITTILLNVNAKNTNVILGTETHTL 261 Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220 + Y+++ L + + SF Q N H+ A LL+LYCG Sbjct: 262 YGQGYIEDTLC----GVPVQLGPLSFYQVNTLAAEHLYGIAAQYAQLTPDDLLLDLYCGM 317 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV---KIVRMSSKEFTQAMRRER 277 G L +A H ++ VEI ++E+A+ N A + + + + + E Sbjct: 318 GTIGLSMAAHCRELIGVEIVPEAIESAKANAARMGADVAAKSRFFCADAGQAATRLAAE- 376 Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL 335 + +DPPR G D+AT+ V + ++Y+SCNP + RD + L Sbjct: 377 -----------GLHPDIVMLDPPRKGCDEATLSAVVRMSPRRVVYVSCNPATAARDAAWL 425 Query: 336 ST-THTIERLALFDQFPYTRHMECGVLLVR 364 + E++ D FP TRH EC + + Sbjct: 426 EQNGYHAEKVQPVDLFPRTRHCECVLSFSK 455 >gi|118580203|ref|YP_901453.1| RNA methyltransferase [Pelobacter propionicus DSM 2379] gi|118502913|gb|ABK99395.1| 23S rRNA m(5)U-1939 methyltransferase [Pelobacter propionicus DSM 2379] Length = 446 Score = 242 bits (618), Expect = 7e-62, Method: Composition-based stats. Identities = 93/378 (24%), Positives = 142/378 (37%), Gaps = 28/378 (7%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMM-----LAFQVPNLQIFRSEPIHYRMRAEFHIWHDGD 56 + Y +QL EK + ++ + YR R +F + G Sbjct: 80 GCSWQHIAYHRQLEEKRRIFADALWRGARAPGELVADVVASPLTYGYRSRVQFKLHGAGP 139 Query: 57 DLYHIMFDQQTKERMRIDY-FMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115 +L + Q T +IN ++ + + P K+ QI+ ++ Sbjct: 140 NLRIGFYRQGTHFVEDAGQGCPIALPVINRILGSLREMLPAFPD-PTKIPQINLECAEKG 198 Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKI----CLDRDYVDERL 171 ++ A R A +Q ++ K+ L E Sbjct: 199 AVVIVNYIGDDHQGAKAFFRERAAQLEQATALYLQTGRKSTLQKVFGDDLLQYSQEGESS 258 Query: 172 TVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNFSLVLARH 230 T +L YR F Q NA N +L V A +L+LYCGNGNFSL LAR Sbjct: 259 TAPACSLTYR--PGGFAQVNAAQNSALLRLVREFADCRRDDQILDLYCGNGNFSLPLARG 316 Query: 231 FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY 290 V +E S+ AAR+N N + NV+ + + + + Sbjct: 317 VAAVTGIEEYGDSIAAARHNARLNGITNVEFICADAAAGAGKLMGD------------GR 364 Query: 291 RFKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSIL-STTHTIERLALFD 348 RF TI +DPPRSG D + + I+YISC+P +L RD +L +T+ D Sbjct: 365 RFPTIILDPPRSGAADLLEHIPRLGADKIIYISCDPSTLARDCGVLFGKGYTVVSSVPVD 424 Query: 349 QFPYTRHMECGVLLVRKP 366 FP T H+E LL R+ Sbjct: 425 MFPQTFHLESVTLLRRRN 442 >gi|302670355|ref|YP_003830315.1| 23S rRNA methyltransferase [Butyrivibrio proteoclasticus B316] gi|302394828|gb|ADL33733.1| 23S rRNA methyltransferase [Butyrivibrio proteoclasticus B316] Length = 470 Score = 242 bits (618), Expect = 7e-62, Method: Composition-based stats. Identities = 87/405 (21%), Positives = 157/405 (38%), Gaps = 61/405 (15%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIF-----RSEP--IHYRMRAEFHIWHD 54 + L Y ++L K ++R ++ + F ++ P YR + EF + Sbjct: 79 GCSYLTMPYVKELGLKEQQVRALLKPAMDRQTERFTWEGIKTSPVKFAYRNKMEFSFGDE 138 Query: 55 --GDDLYHIMFDQQTK-ERMRIDYFMPGSLLINAL---------------MIEMMATIRL 96 G L M + + + + + A+ I ++ Sbjct: 139 VMGGPLCLGMHKKGSFYDIVTVSGCRIVDDDYRAILSATLDYFSPMYASGEISFYHRMKQ 198 Query: 97 EPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAI------RLRDALHARKYQIQ 150 LR L + T I+T +++ + R+ LH + + Sbjct: 199 TGYLRHLLVRKAVRTGDILVDIITTTQEEHDLTGFKDALLGLSLSGRITGILHTKNDSLA 258 Query: 151 LIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGI- 209 T+I +D+ E L L +R SF Q N+ + + V + K + Sbjct: 259 DAVIDEGTEILYGQDFFYEHLL----GLKFRITPFSFFQTNSLSAEVLYQTVRSYIKSLY 314 Query: 210 -------QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262 G + +LY G G + +LA ++V+ VEI + +VEAA+ N N+++N + + Sbjct: 315 DQKKISKDGIIYDLYSGTGTIAQLLAPVANKVIGVEIVEEAVEAAKENAKLNNLDNCEFI 374 Query: 263 RMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILY 320 LK +D + I +DPPR G++ + + Y +++Y Sbjct: 375 AGDV---------------LKVLDEIEDKPDMIILDPPRDGINPKALQKIIGYGVKYMIY 419 Query: 321 ISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364 +SC P SL RDL +L + + R DQFP+T H+E VLL + Sbjct: 420 VSCKPTSLARDLEVLQENGYVMTRAVAVDQFPWTSHVETVVLLTK 464 >gi|89890519|ref|ZP_01202029.1| RNA methyltransferase [Flavobacteria bacterium BBFL7] gi|89517434|gb|EAS20091.1| RNA methyltransferase [Flavobacteria bacterium BBFL7] Length = 485 Score = 242 bits (618), Expect = 7e-62, Method: Composition-based stats. Identities = 74/400 (18%), Positives = 140/400 (35%), Gaps = 54/400 (13%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFH------ 50 YE QL K + + + E +YR + EF Sbjct: 99 GCKWQHMSYESQLFFKQKEVVENLTRIGHLELPEVTPIAGSEEQYYYRNKMEFSFSASRW 158 Query: 51 ---------IWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-- 99 + + + + +D + + + + A E + Sbjct: 159 LTLEEIQSEVQIEDKKALGFHIPGMWDKILHLDECHLHPAIGEQIRLSVHAFAEAEQIEY 218 Query: 100 -----LRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGR 154 L + S + + +V + + + + A L+++ K +I Sbjct: 219 FNPREKTGVLRTLMLRMSSTGEIMVVIQFFKEDEKARISLLEHLKNSFPQIKSLQYIINE 278 Query: 155 A------NKTKICL-DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATK 207 ++ IC RD++ E + L ++ SF Q N+ L + Sbjct: 279 KANDTIYDQEVICYDGRDHIFEEM----EGLQFKINAKSFYQTNSKQAFE-LYKITRDFA 333 Query: 208 GIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265 G+ G+ + +LY G G + +A+ + V+ +E ++E A+ N A N ++N Sbjct: 334 GLTGEELVYDLYTGTGTIAQFVAKKANHVVGIESVPVAIEDAKANAAHNGIDNTTFFAGD 393 Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG--MVQAYPHILYISC 323 ++ A D + DPPR G+ V + A P I+Y+SC Sbjct: 394 MRDVFTA-----------DFIAEHGAPDVVITDPPRDGMHKDVVAQLLALAAPRIVYVSC 442 Query: 324 NPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363 N + RDL++L+ + + + D FP T H+E VLL Sbjct: 443 NSATQARDLALLNEQYKVVKYQPVDMFPQTHHVESVVLLE 482 >gi|322419663|ref|YP_004198886.1| TrmA family RNA methyltransferase [Geobacter sp. M18] gi|320126050|gb|ADW13610.1| RNA methyltransferase, TrmA family [Geobacter sp. M18] Length = 438 Score = 242 bits (618), Expect = 7e-62, Method: Composition-based stats. Identities = 90/373 (24%), Positives = 144/373 (38%), Gaps = 35/373 (9%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPNLQ-----IFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63 Y++QL +K + + + YR R + + + F Sbjct: 83 PYQEQLEQKGAIFADTLSRIGKVPRENVLPVAGSPDCYGYRSRVQVKVSQQKGAVNLGFF 142 Query: 64 DQQTKERMRIDY-FMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122 + E + + L+N + E A + P L + Q+D T + I L Sbjct: 143 RTASHEVVDFGAGCPLANDLLNRMASEFRALLPRLPQL-DCISQLDLSTGDEGEGIAILH 201 Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTV--------A 174 D E R+ L + G + L R + E L+ Sbjct: 202 CKGSRPDQLVERLSASREQLPSVAGAFVRGGAKGE----LTRAFGIESLSYSIPAGLFPG 257 Query: 175 GRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG--DLLELYCGNGNFSLVLARHFD 232 R L R F+Q N N+ ++ V G+ G +L+LYCGNGN S+ LA + Sbjct: 258 SRELRLRFGRGGFSQVNYRQNLALIGTVWE-WAGLTGKERVLDLYCGNGNISIPLAPYAA 316 Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292 V VE PS+ A N AN V N + + + + + +E +F Sbjct: 317 EVFGVEGFAPSIVDAAANAEANGVGNASFQVSDAAQAVRRLHKRKE------------KF 364 Query: 293 KTIFVDPPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFP 351 + +DPPR+G + A A I+Y+SC+P +L RDL++L S + + R D FP Sbjct: 365 DLVVLDPPRAGAEAAAELAQLAPEKIIYVSCDPATLARDLAVLSSNGYQLTRSRPVDMFP 424 Query: 352 YTRHMECGVLLVR 364 T H+E L+R Sbjct: 425 QTYHLESVTELIR 437 >gi|88808527|ref|ZP_01124037.1| 23S rRNA methyltransferase/RumA [Synechococcus sp. WH 7805] gi|88787515|gb|EAR18672.1| 23S rRNA methyltransferase/RumA [Synechococcus sp. WH 7805] Length = 466 Score = 242 bits (618), Expect = 7e-62, Method: Composition-based stats. Identities = 85/393 (21%), Positives = 147/393 (37%), Gaps = 46/393 (11%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVP-----NLQIFRSEPIHYRMRAEFHIWHDGD 56 TL Q K + L+ +L L E + YR RA I Sbjct: 86 GCTLQHISVNAQNQWKQEHLKATLLRIGGVTTLAGPLISPEDESLGYRNRALIPIQRGEG 145 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKLF 105 L + + + + +++ ++AL+ + + L EP LR Sbjct: 146 GLRLGYYRRGSHRIVNLNHCPVLDPRLDALIEPIKNDLALTDWPMDSDLRGEPGLRHLGL 205 Query: 106 QIDYLTSQSDQAIVTLIYHRL----LDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161 +I T Q ++V H L W + +L+ + + +T Sbjct: 206 RIGVRTGQILISLVAATDHLPGLDRLTAEWMQRWPQLKGVTLNVQPKRSNTVIGEQTLCI 265 Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKG--IQGDLLELYCG 219 D ++E L + +F Q N ++ + ++++ YCG Sbjct: 266 QGDDVIEENFC----GLSLQLGTTTFFQVNTTRAEQVVTMICDWIHASAPSANVIDAYCG 321 Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279 G +L LA V+ +EI + SV A+ N N + V + E + + Sbjct: 322 IGTIALPLAASGLNVVGLEINRDSVIQAQENAQRNGLEKVCFLDGDVAEHLEQLL----- 376 Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLSILS- 336 + + VDPPR GL A + M+ A P ++Y+SC+P +L RDL L+ Sbjct: 377 ----------PHHQALVVDPPRKGLAPAVLQMILAIPPAFLIYLSCDPATLARDLQQLAG 426 Query: 337 --TTHTIERLALFDQFPYTRHMECGVLLVRKPS 367 + IE++ D FP T H+EC V+++R S Sbjct: 427 PDGPYRIEQIKPVDFFPQTSHLECLVMMIRVSS 459 >gi|288803297|ref|ZP_06408730.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella melaninogenica D18] gi|288334117|gb|EFC72559.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella melaninogenica D18] Length = 474 Score = 242 bits (617), Expect = 7e-62, Method: Composition-based stats. Identities = 81/402 (20%), Positives = 143/402 (35%), Gaps = 63/402 (15%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPNLQIFRS-----EPIHYRMRAEFHI----WH------ 53 YE+QL K ++ + L FR YR + EF W+ Sbjct: 91 PYEEQLKAKQQQVYDQLSRIGKVELPEFRPIMGSVHTKEYRNKLEFGCANKRWYTEEELK 150 Query: 54 ---------DGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----- 99 +G +HI + I+ L N + + + Sbjct: 151 ALPKGVGLAEGAIGFHITGAFD--KVYPIEKCWLMDDLCNKIRKAIRDYAFSTGMKFYDI 208 Query: 100 --LRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANK 157 L I S + + +V + +H ++ E A L + R QI + + Sbjct: 209 RAQHGLLRDIMVRNSNTGEWMVLVQFHYD-EEGDDERAKALMQHIADRFPQISSLFYVDN 267 Query: 158 TK-----------ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAAT 206 K + D++ E + L ++ SF Q N H+ Sbjct: 268 QKGNDTFNDLELTLFKGNDHIFETM----EDLRFKVGPKSFYQTNTEQAYHLYSVAREFA 323 Query: 207 KGIQGDLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265 +L+ +LY G G + +A+ +V+ +E ++E A+ N N ++N Sbjct: 324 NLTGNELVYDLYTGTGTIANFVAKKAQKVIGIEYVPEAIEDAKVNSEVNKIDNTLFYAGD 383 Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISC 323 K+ +D R I DPPR+G+ V ++ + I+Y+SC Sbjct: 384 MKDILT-----------EDFISEHGRPDVIITDPPRAGMHPDVVNVILGASPKRIVYVSC 432 Query: 324 NPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 NP + RDL++L + + + D FP T H+E VLL ++ Sbjct: 433 NPATQARDLALLDADYKVSAVQPVDMFPQTPHVENVVLLEKR 474 >gi|160879502|ref|YP_001558470.1| RNA methyltransferase [Clostridium phytofermentans ISDg] gi|160428168|gb|ABX41731.1| RNA methyltransferase, TrmA family [Clostridium phytofermentans ISDg] Length = 463 Score = 242 bits (617), Expect = 7e-62, Method: Composition-based stats. Identities = 90/401 (22%), Positives = 151/401 (37%), Gaps = 57/401 (14%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVP-----NLQIFRSEP--IHYRMRAEFHIW-- 52 T YE Q+ K D++++++ Q P YR + EF Sbjct: 80 GCTYQTIPYETQIKIKADQVKKLIDEVIATDNKEYEFQGIEGSPLEFGYRNKMEFSFGDE 139 Query: 53 ----------HDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEM--MATIRLEPLL 100 H Y I+ K + G +L A + + E L Sbjct: 140 FKDGPLALGLHKKGSFYDIVTTSDCKLVHEDYNRILGCVLSLAKEYNLNYYHKMSHEGYL 199 Query: 101 RAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDAL-------------HARKY 147 R L + T + +++T +L + E +LR++L H Sbjct: 200 RHLLIRRAARTGEILVSLITTSQTNVLVNGEEEFLNKLRESLKNLSLEGSIVGILHTVND 259 Query: 148 QIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATK 207 + + ++++T I +D++ E + L ++ SF Q N+ + V Sbjct: 260 SLADVVQSDRTDILDGQDFIFEEVL----GLKFKISTFSFFQTNSLGAEVLYNCVRDFVG 315 Query: 208 GIQGDLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266 + L+ +LY G G + +LA +V+ VEI +V AAR N + N + N + + Sbjct: 316 ETKDKLIFDLYSGTGTIAQLLAPVAKKVIGVEIVGEAVVAARENASLNKLTNCEFIAGDV 375 Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCN 324 LK ID + I +DPPR G+ + + ++YISC Sbjct: 376 ---------------LKVIDTIEEKPDLIVLDPPRDGIHPKALDKIIDYGVDRLVYISCK 420 Query: 325 PDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364 P SL RDL +L + +E++ D FP T H E LL R Sbjct: 421 PSSLARDLVVLQERGYWVEKVRCVDMFPCTVHTETVCLLNR 461 >gi|219667634|ref|YP_002458069.1| RNA methyltransferase, TrmA family [Desulfitobacterium hafniense DCB-2] gi|219537894|gb|ACL19633.1| RNA methyltransferase, TrmA family [Desulfitobacterium hafniense DCB-2] Length = 446 Score = 242 bits (617), Expect = 7e-62, Method: Composition-based stats. Identities = 75/374 (20%), Positives = 142/374 (37%), Gaps = 40/374 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54 L Y Q L K + + L+ + EP YR +A H Sbjct: 94 GCQLQHLNYAQTLLWKKRWVEDALTRIGKIPLEKVKVHPTLGMDEPWRYRNKARL---HR 150 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLT-SQ 113 G+ + +++K + + S +N + E A + + + ++ LT + Sbjct: 151 GEGNTLGYYQEKSKATVPFTDCLLISESMNRWVREAEAILGQQD--KNLFPDLNALTFRE 208 Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTV 173 + Q LI L D + + H+ + +I +++ ++ L Sbjct: 209 NSQGEGMLILDSLKDVRQADVWSEMGGGTHSV---WGINSSGEPERIAGQKEFTEDVLGA 265 Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLARHFD 232 ++ +F Q N + VL + + +LYCG G +L LA Sbjct: 266 -----RFKISPLAFLQVNPVQTRKLYNKVLDWAELSTEKVVWDLYCGIGTITLALAAKAK 320 Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292 +V +E +VE AR N N VNNV+ + +++ Q + Sbjct: 321 KVWGIEENPYAVEDARENAKRNRVNNVEFMVGKAEDTFQQI---------------GDYP 365 Query: 293 KTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCRDLSILS-TTHTIERLALFDQ 349 + +DPPR+G + +++ P I+Y+SC+ +L RDL IL + + + D Sbjct: 366 HIVVLDPPRAGAHRKVLEGLLELKPEQIIYVSCDAGTLARDLGILQNGGYRVVEVQPVDM 425 Query: 350 FPYTRHMECGVLLV 363 FP+T +E +++ Sbjct: 426 FPWTVSVESIIVMT 439 >gi|294775567|ref|ZP_06741077.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides vulgatus PC510] gi|294450617|gb|EFG19107.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides vulgatus PC510] Length = 473 Score = 242 bits (617), Expect = 7e-62, Method: Composition-based stats. Identities = 78/404 (19%), Positives = 153/404 (37%), Gaps = 62/404 (15%) Query: 4 TLLIDQYEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFH-------- 50 L Y +Q+ K ++ + I + YR + EF Sbjct: 89 CLP---YTEQIKYKQKQVTDNLTRIGKIELPEISPIIGSEKTEFYRNKLEFTFSNKRWLT 145 Query: 51 -------IWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL---- 99 + +D + + + I+ + N + + Sbjct: 146 EEEVKEDVKYDQMNAVGFHIPGAFDKVLAIEKCWLQDDISNQIRNAIRDYAYEHNYSFFN 205 Query: 100 LRAK---LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGR-- 154 LR++ L + TS + + +V L+ ++++++ + +L + R QI + Sbjct: 206 LRSQEGMLRNLMIRTSSTGELMV-LLQCKIVEESEMDLMKQLLAFVAERFPQITSLLYVV 264 Query: 155 -------ANKTKICL--DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA 205 N ++ + D++ E + L ++ SF Q N+G + L V Sbjct: 265 NNKCNDTINDLEVMVFKGNDHIFEEM----EGLRFKIGAKSFYQTNSGQAYN-LYKVARN 319 Query: 206 TKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVR 263 G+ G + +LY G G + ++R +V+ +E ++E A+ N A N ++N Sbjct: 320 FAGLTGKELVYDLYTGTGTIANFVSRQAKKVIGIEYVPEAIEDAKVNSAINGIDNTLFYA 379 Query: 264 MSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYI 321 K+ ++ R I DPPR+G+ D + + I+Y+ Sbjct: 380 GDMKDILT-----------QEFINQHGRPDVIITDPPRAGMHDDVINTILFAEPQRIVYV 428 Query: 322 SCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 SCNP + RDLS+L + + + D FP+T H+E VLL ++ Sbjct: 429 SCNPATQARDLSLLDAKYKVMAVQPVDMFPHTHHVENVVLLEKR 472 >gi|91227846|ref|ZP_01262019.1| 23S rRNA (uracil-5-)-methyltransferase [Vibrio alginolyticus 12G01] gi|91188356|gb|EAS74652.1| 23S rRNA (uracil-5-)-methyltransferase [Vibrio alginolyticus 12G01] Length = 439 Score = 242 bits (617), Expect = 7e-62, Method: Composition-based stats. Identities = 81/371 (21%), Positives = 153/371 (41%), Gaps = 30/371 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI---FRSEPIHYRMRAEFHIWHDGD-- 56 L Y+QQL K LRQ+M F ++++ + YR RA ++ D Sbjct: 90 GCDLQHLDYDQQLTYKQQTLRQLMRKFSGSDIELDAPLLGDSQAYRRRARVSLFVDKKTR 149 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116 L+ +Q+K+ ++ + +N L+ E+ + ++ +L ++ + + Sbjct: 150 QLHFGFRKKQSKQIAQVTDCPVLAPELNVLLPEIYSALKAFKK-PEQLGHVELVLGDNGP 208 Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGR 176 I TL + L + + L + L+ + + + + V Sbjct: 209 CI-TLRHLSALTTSETQSLTELAKR---HGASLYLMPSTEQLDLIEGDMPFYQEVGVKIP 264 Query: 177 TLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVL 235 N+F Q N G+N M++ + + D +L+L+CG GNFSL +A+ V+ Sbjct: 265 -----FAPNNFIQVNQGVNQQMVKQAVEWLDPQKSDRVLDLFCGLGNFSLPVAKLAKHVV 319 Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295 VE VE A N + N +NN + + ++ + + RF + Sbjct: 320 GVEGVAEMVEKATNNASLNQINNAQFYHANLEQ------------DFEGQAWAAERFDKV 367 Query: 296 FVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYT 353 +DP R+G + + ++Y+SCNP +L RD L + + +L + D FP+T Sbjct: 368 LLDPARAGASGIIDQVSELGAQRVVYVSCNPATLARDSQSLIEQGYQLTKLGMLDMFPHT 427 Query: 354 RHMECGVLLVR 364 H+E L + Sbjct: 428 SHLESMALFEK 438 >gi|160946481|ref|ZP_02093690.1| hypothetical protein PEPMIC_00445 [Parvimonas micra ATCC 33270] gi|158447597|gb|EDP24592.1| hypothetical protein PEPMIC_00445 [Parvimonas micra ATCC 33270] Length = 450 Score = 242 bits (617), Expect = 7e-62, Method: Composition-based stats. Identities = 84/390 (21%), Positives = 154/390 (39%), Gaps = 45/390 (11%) Query: 2 SGTLLID-QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSE-PIHYRMRAE--FHIWHDGDD 57 G YE +L K +++++ +IF S YR + E F + Sbjct: 80 GGCSYQSVPYEYELKLKQRQIKELFEDVYSEEPEIFESPLKTAYRNKMEYTFADMYKDSP 139 Query: 58 LYHIMFDQ-------QTKE--RMRIDYFMPGSLLIN---ALMIEMMATIRLEPLLRAKLF 105 + M + TKE + ID+ + + +I+ + + E LLR + Sbjct: 140 IMLGMHKKNRFYEVIDTKECNLVHIDFEIIRNAVIDFVREKNLPFVKKRTHEGLLRHLII 199 Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLR------DALHARKYQIQLIGRANKTK 159 + T + IVT ++ + + L+ +H + K Sbjct: 200 RYALTTGEIMVNIVTTTQSEFDSKSFVDMLLGLKLEGNIKSIVHTENDSLADAVVPEKIN 259 Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYC 218 I ++Y+ E++ L ++ SF QPN +++ + I+ ++ +LY Sbjct: 260 IIFGKEYITEKI----FDLEFKVTPFSFFQPNVFGAINLYSKAIELCGDIENKVVFDLYS 315 Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278 G G ++AR V +EI + +VE+A + N + N + Sbjct: 316 GTGTIGQIVARKAKAVYGIEIVEEAVESANKSAKENGLTNCTFIAGDV------------ 363 Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLS-IL 335 L++I+ I VDPPR G++ + + + I+YISCNP + RD+ +L Sbjct: 364 ---LEEIENRKEMVDVIIVDPPRDGINQKALEKIISCGAKTIVYISCNPKTQKRDIQILL 420 Query: 336 STTHTIERLALFDQFPYTRHMECGVLLVRK 365 + + L +F+QFP T H E LL R+ Sbjct: 421 QNGYKLITLKIFNQFPRTVHCEAVALLERR 450 >gi|257063252|ref|YP_003142924.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Slackia heliotrinireducens DSM 20476] gi|256790905|gb|ACV21575.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Slackia heliotrinireducens DSM 20476] Length = 401 Score = 242 bits (617), Expect = 8e-62, Method: Composition-based stats. Identities = 78/398 (19%), Positives = 139/398 (34%), Gaps = 51/398 (12%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN----LQIFRSEPIHYRMRAEFHI------ 51 + L Y QQLA K + ++ + P+HYR + Sbjct: 17 GCSWLRVPYGQQLARKQQHVDELFADLIDDGTQCLPILGMKVPLHYRNKVVSPFVGIYDK 76 Query: 52 WHDGDDLYHIMFDQQTKERMRIDYFMPGS-----------LLINALMIEMMATIRLEPLL 100 + M+++ T + + + L+ IE R E L Sbjct: 77 RTRRRRILCGMYERGTHWVIDSSECLIENAQAKAIILTIRDLMPKFRIEPYDEDRDEGFL 136 Query: 101 RAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKI 160 R ++ + S + +VTL+ ++ L +Q + + KT + Sbjct: 137 RHAQVRVGH---NSGEVMVTLVTRTEQFPTAKKFVRALVSRHPEITTVVQNVN-SRKTNV 192 Query: 161 CLD----RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLE 215 + + Y + L +R SF Q N+ + + A +++ Sbjct: 193 IMGDKERKLYGPGFILDTLCGLSFRISSTSFYQVNSTQTEVLYSTAIRMAKLTGTETVMD 252 Query: 216 LYCGNGNFSLVLARH------FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269 YCG G LV R +++ VE +V AR N N ++N + V + + Sbjct: 253 AYCGTGTIGLVAVRGINGEPGAAKLIGVEERADAVADARNNARHNGIDNAEFVAADAGAY 312 Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDS 327 + + +F+DPPR+G + + I+YISCNP + Sbjct: 313 MR------------EQAEQGRSVDVLFMDPPRAGSTPDFLKAACSISPKRIVYISCNPTT 360 Query: 328 LCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364 RD L + I+ L D FP+T H+EC + + R Sbjct: 361 QARDAKYLIEHGYRIDVLQPVDMFPHTDHVECVISMSR 398 >gi|82545084|ref|YP_409031.1| 23S rRNA 5-methyluridine methyltransferase [Shigella boydii Sb227] gi|91207811|sp|Q31XK5|RUMA_SHIBS RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|81246495|gb|ABB67203.1| putative enzyme [Shigella boydii Sb227] gi|332091873|gb|EGI96951.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Shigella boydii 3594-74] Length = 433 Score = 242 bits (617), Expect = 8e-62, Method: Composition-based stats. Identities = 84/368 (22%), Positives = 141/368 (38%), Gaps = 30/368 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWH--DGDDLY 59 + Q K L ++M + ++ P YR RA + + L Sbjct: 89 GCQQQHASVDLQQRSKSAALARLM---KHEVSEVIADVPWGYRRRARLSLNYLPKTQQLQ 145 Query: 60 HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119 + + + + + AL+ ++ A + +R L ++ + + S ++ Sbjct: 146 MGFRKAGSSDIVDVKQCPILVPQLEALLPKVRACLGSLQAMRH-LGHVELVQATSGTLMI 204 Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179 L + L A RE R H+ + L + + E L Sbjct: 205 -LRHTAPLSSADREKLERFS---HSEGLDLYLAPDSEILETVSG-----EMPWYDSNGLR 255 Query: 180 YRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVE 238 F Q NAG+N M+ L + +L+L+CG GNF+L LA V+ VE Sbjct: 256 LTFSPRDFIQVNAGVNQKMVASALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVE 315 Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298 VE + N N + NV + +E + F + +D Sbjct: 316 GVPALVEKGQQNARLNGLQNVTFYHENLEE------------DVTKQPWAKNGFDKVLLD 363 Query: 299 PPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHM 356 P R+G +++ P I+Y+SCNP +L RD ++L +TI RLA+ D FP+T H+ Sbjct: 364 PARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHL 423 Query: 357 ECGVLLVR 364 E VL R Sbjct: 424 ESMVLFSR 431 >gi|331674278|ref|ZP_08375038.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli TA280] gi|331068372|gb|EGI39767.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli TA280] Length = 433 Score = 242 bits (617), Expect = 8e-62, Method: Composition-based stats. Identities = 84/357 (23%), Positives = 141/357 (39%), Gaps = 30/357 (8%) Query: 13 QLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWH--DGDDLYHIMFDQQTKER 70 Q K L ++M + ++ P YR RA + + L + + Sbjct: 100 QQRSKSAALARLM---KHEVSEVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDI 156 Query: 71 MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDA 130 + + + AL+ ++ A + +R L ++ + + S + ++ L + L A Sbjct: 157 VDVKQCPILVPQLEALLPKVRACLGSLQAIRH-LGHVELVQATSGKLMI-LRHTAPLSSA 214 Query: 131 WRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQP 190 RE R H+ + L + + E L F Q Sbjct: 215 DREKLERFS---HSEGLDLYLAPDSEILETVSG-----EMPWYDSNGLRLTFSPRDFIQV 266 Query: 191 NAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249 NAG+N M+ L + +L+L+CG GNF+L LA V+ VE VE + Sbjct: 267 NAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQ 326 Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309 N N + NV + +E + F + +DP R+G Sbjct: 327 NARLNGLQNVTFYHENLEE------------DVTKQPWAKNGFDKVLLDPARAGAAGVMQ 374 Query: 310 GMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 +++ P I+Y+SCNP +L RD ++L +TI RLA+ D FP+T H+E VL R Sbjct: 375 QIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSR 431 >gi|323971613|gb|EGB66844.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli TA007] Length = 433 Score = 242 bits (617), Expect = 8e-62, Method: Composition-based stats. Identities = 84/368 (22%), Positives = 142/368 (38%), Gaps = 30/368 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWH--DGDDLY 59 + Q K L ++M + ++ P YR RA + + L Sbjct: 89 GCQQQHASVDLQQRSKSAALARLM---KHDVSEVIADVPWGYRRRARLSLNYLPKTQQLQ 145 Query: 60 HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119 + + + + + + AL+ ++ A + +R L ++ + + S ++ Sbjct: 146 MGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMRH-LGHVELVQATSGTLMI 204 Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179 L + L A RE R H+ + L + + E L Sbjct: 205 -LRHTAPLSSADREKLERFS---HSEGLDLYLAPDSEILETVSG-----EMPWYDSNGLR 255 Query: 180 YRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVE 238 F Q NAG+N M+ L + +L+L+CG GNF+L LA V+ VE Sbjct: 256 LTFSPRDFIQVNAGVNQKMVARALELLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVE 315 Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298 VE + N N + NV + +E + F + +D Sbjct: 316 GVPALVEKGQQNARLNGLQNVTFYHENLEE------------DVTKQPWAKNGFDKVLLD 363 Query: 299 PPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHM 356 P R+G +++ P I+Y+SCNP +L RD ++L +TI RLA+ D FP+T H+ Sbjct: 364 PARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHL 423 Query: 357 ECGVLLVR 364 E VL R Sbjct: 424 ESMVLFSR 431 >gi|86607994|ref|YP_476756.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Synechococcus sp. JA-2-3B'a(2-13)] gi|86556536|gb|ABD01493.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Synechococcus sp. JA-2-3B'a(2-13)] Length = 464 Score = 242 bits (617), Expect = 8e-62, Method: Composition-based stats. Identities = 75/382 (19%), Positives = 137/382 (35%), Gaps = 46/382 (12%) Query: 9 QYEQQLAEKVDRLRQMMLAFQV-----PNLQIFRSEPIHYRMRAEFHIWH-DGDDLYHIM 62 Y QQLA K LR + P + +P+ YR + + + +G L Sbjct: 102 SYAQQLATKQQILRDALERIGGLTLPQPVPILGSQQPLRYRNKVTYPMAKPEGQPLRMGY 161 Query: 63 FDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-----------LRAKLFQIDYLT 111 + + + + ++ ++ + E+ ++ LR +I T Sbjct: 162 YQRGSHRLVNLNQCPVQDERLDVFLREIKRDLQETGWSVYDESRHQGHLRHLGLRIGRRT 221 Query: 112 SQSDQAIVTLIYHRLLDDAWRECAIR----LRDALHARKYQIQLIGRANKTKICLDRDYV 167 + +V+ ++W E ++ L +T++ R + Sbjct: 222 REVLLTLVSCSRRLPHLESWAERWMQRYPDLVGVCLNLNSARTNAIFGPETEVIAGRGSL 281 Query: 168 DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGI-QGDLLELYCGNGNFSLV 226 E SF Q N W+ + +L+ YCG G +L+ Sbjct: 282 REEFA----GFSLWIDSTSFFQVNTEQAEAFFTWIADQLNLRGEETILDAYCGIGTLTLL 337 Query: 227 LARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDID 286 LA+ R + VE +V ARYN N + + + + + ++ + Sbjct: 338 LAQRAKRAMGVEALPEAVAQARYNAQFNGIASAQFFQGTVEQVLPTLP------------ 385 Query: 287 IHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSIL--STTHTIE 342 + +DPPR G D + ++ P I+YISC+P +L RDL IL ++ + Sbjct: 386 ----PADIVVLDPPRRGCDRQVLETLKLRRPPRIVYISCHPATLARDLQILLAEGSYRLT 441 Query: 343 RLALFDQFPYTRHMECGVLLVR 364 + D FP T H+E L R Sbjct: 442 QWRAADFFPQTGHVEGVAFLER 463 >gi|295692497|ref|YP_003601107.1| RNA methyltransferase [Lactobacillus crispatus ST1] gi|295030603|emb|CBL50082.1| RNA methyltransferase [Lactobacillus crispatus ST1] Length = 462 Score = 242 bits (617), Expect = 9e-62, Method: Composition-based stats. Identities = 75/386 (19%), Positives = 146/386 (37%), Gaps = 40/386 (10%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNL-------QIFRSEPIHYRMRAEFHIWHDGDD 57 L+ Y++QL K + + + + + N I +P HYR +A++ I D Sbjct: 91 LVHLSYDKQLEFKKNNMLESLRKYHPRNYNKYKVKNTIAAPDPWHYRNKAQYQIEKDHGQ 150 Query: 58 LYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLFQ 106 L +F + + + S LI L + + R P ++ + + Sbjct: 151 LKLGLFAPNSHRLIDLPKMPTQSEDTQKTERKIKVLIEKLHVPVANYRRHLPGIKTVVVR 210 Query: 107 IDYLTSQSDQAIVTLIYH-RLLDDAWRECAI--RLRDALHARKYQIQLIGRANKTKICLD 163 T + ++T+ + + L +E + NKT+ L Sbjct: 211 QSEATKEIQVTLITIGHKIKNLIPLAKEIMKLDHVVSVYQNETEWQNPQVWGNKTEKLLG 270 Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGN 222 ++ + E + L +F Q N +++ L L++ Y G G Sbjct: 271 KNQITEEILGKKFAL----SPRAFFQLNPVQTINLYSEALKYLDLTPDQTLIDAYSGVGT 326 Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282 ++ A +V+ +E +V+ A++N+ NH+ N ++ S ++ L Sbjct: 327 LGILAADRVKQVVGIETIPEAVKDAQHNVELNHIKNADYIQGSVEKV------------L 374 Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLSILSTTHT 340 ++ + VDPPR+GL + + + +YISCNP +L +DL +LS + Sbjct: 375 PELQNSGVAINALIVDPPRTGLAKSLIKTLLRVKPETFVYISCNPSTLAQDLVLLSEAYD 434 Query: 341 IERLALFDQFPYTRHMECGVLLVRKP 366 + + D P T E LV + Sbjct: 435 VRVIQNVDMLPQTPRCEAIAKLVLRK 460 >gi|222034476|emb|CAP77218.1| 23S rRNA [Escherichia coli LF82] gi|312947312|gb|ADR28139.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia coli O83:H1 str. NRG 857C] Length = 433 Score = 242 bits (617), Expect = 9e-62, Method: Composition-based stats. Identities = 84/368 (22%), Positives = 142/368 (38%), Gaps = 30/368 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWH--DGDDLY 59 + Q K L ++M + ++ P YR RA + + L Sbjct: 89 GCQQQHASVDLQQRSKSAALARLM---KHEVSEVIADVPWGYRRRARLSLNYLPKTQQLQ 145 Query: 60 HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119 + + + + + AL+ ++ A + +R L ++ + + S ++ Sbjct: 146 MGFRKAGSSDIVDVKQCPILVPQLEALLPKVRACLGSLQSMRH-LGHVELVQATSGTLMI 204 Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179 L + L A RE +L H+ + L + + E L Sbjct: 205 -LRHTAPLSSADRE---KLECFSHSEGLDLYLAPDSEILETVSG-----EMPWYDSNGLR 255 Query: 180 YRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVE 238 F Q NAG+N M+ L + +L+L+CG GNF+L LA V+ VE Sbjct: 256 LTFSPRDFIQVNAGVNQKMVARALEWLDVEPEDRVLDLFCGMGNFTLPLATQAASVVGVE 315 Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298 VE + N N + NV + +E + F + +D Sbjct: 316 GVPALVEKGQQNARLNGLQNVTFYHENLEE------------DVTKQPWAKNGFDKVLLD 363 Query: 299 PPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHM 356 P R+G +++ P I+Y+SCNP +L RD ++L +TI RLA+ D FP+T H+ Sbjct: 364 PARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHL 423 Query: 357 ECGVLLVR 364 E VL R Sbjct: 424 ESMVLFSR 431 >gi|265753522|ref|ZP_06088877.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides sp. 3_1_33FAA] gi|263235236|gb|EEZ20760.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides sp. 3_1_33FAA] Length = 473 Score = 242 bits (617), Expect = 9e-62, Method: Composition-based stats. Identities = 80/404 (19%), Positives = 155/404 (38%), Gaps = 62/404 (15%) Query: 4 TLLIDQYEQQLAEKVDRLRQMML---AFQVPNLQIFRSEPIH--YRMRAEFH-------- 50 L Y +Q+ K ++ + ++P + YR + EF Sbjct: 89 CLP---YTEQIKYKQKQVTDNLTRIGKIELPEISPIMGSEKTEFYRNKLEFTFSNKRWLT 145 Query: 51 -------IWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL---- 99 + +D + + + ID + N + + Sbjct: 146 EEEVKEDVKYDQMNAVGFHIPGAFDKVLAIDKCWLQDDISNQIRNAIRDYAYEHNYSFFN 205 Query: 100 LRAK---LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQ-----L 151 LR++ L + TS + + +V L+ +++++ + RL + R QI + Sbjct: 206 LRSQEGMLRNLMIRTSSTGELMV-LLQCKIVEEGELDLMKRLLTFVAERFPQITSLLYVV 264 Query: 152 IGRANKT------KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA 205 + N T + +++ E + L ++ SF Q N+G + L V Sbjct: 265 NNKCNDTINDLDVMVFKGNNHIFEEM----EGLRFKIGAKSFYQTNSGQAYN-LYKVARN 319 Query: 206 TKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVR 263 G+ G+ + +LY G G + ++R +V+ +E ++E A+ N A N ++N Sbjct: 320 FAGLTGNELVYDLYTGTGTIANFVSRQAKKVIGIEYVPEAIEDAKVNSAINGIDNTLFYA 379 Query: 264 MSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYI 321 K+ ++ R I DPPR+G+ D + + I+Y+ Sbjct: 380 GDMKDILT-----------QEFISQHGRPDVIITDPPRAGMHDDVINTILFAEPQRIVYV 428 Query: 322 SCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 SCNP + RDLS+L + + + D FP+T H+E VLL ++ Sbjct: 429 SCNPATQARDLSLLDAKYKVMAVQPVDMFPHTHHVENVVLLEKR 472 >gi|194439665|ref|ZP_03071736.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli 101-1] gi|253772364|ref|YP_003035195.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254162711|ref|YP_003045819.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia coli B str. REL606] gi|297518509|ref|ZP_06936895.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia coli OP50] gi|300931243|ref|ZP_07146583.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS 187-1] gi|194421412|gb|EDX37428.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli 101-1] gi|242378332|emb|CAQ33109.1| 23S rRNA m[5]U1939 methyltransferase [Escherichia coli BL21(DE3)] gi|253323408|gb|ACT28010.1| RNA methyltransferase, TrmA family [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253974612|gb|ACT40283.1| 23S rRNA (uracil-5-)-methyltransferase [Escherichia coli B str. REL606] gi|253978777|gb|ACT44447.1| 23S rRNA (uracil-5-)-methyltransferase [Escherichia coli BL21(DE3)] gi|300460897|gb|EFK24390.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS 187-1] gi|323960697|gb|EGB56321.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli H489] Length = 433 Score = 242 bits (617), Expect = 9e-62, Method: Composition-based stats. Identities = 84/368 (22%), Positives = 142/368 (38%), Gaps = 30/368 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWH--DGDDLY 59 + Q K L ++M + ++ P YR RA + + L Sbjct: 89 GCQQQHASVDLQQRSKSAALARLM---KHDVSEVIADVPWGYRRRARLSLNYLPKTQQLQ 145 Query: 60 HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119 + + + + + + AL+ ++ A + +R L ++ + + S ++ Sbjct: 146 MGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMRH-LGHVELVQATSGTLMI 204 Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179 L + L A RE R H+ + L + + E L Sbjct: 205 -LRHTAPLSSADREKLERFS---HSEGLDLYLAPDSEILETVSG-----EMPWYDSNGLR 255 Query: 180 YRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVE 238 F Q NAG+N M+ L + +L+L+CG GNF+L LA V+ VE Sbjct: 256 LTFSPRDFIQVNAGVNQKMVARALELLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVE 315 Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298 VE + N N + NV + +E + F + +D Sbjct: 316 GVPALVEKGQQNARLNGLQNVTFYHENLEE------------DVTKQPWAKNGFDKVLLD 363 Query: 299 PPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHM 356 P R+G +++ P I+Y+SCNP +L RD ++L +TI RLA+ D FP+T H+ Sbjct: 364 PARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHL 423 Query: 357 ECGVLLVR 364 E VL R Sbjct: 424 ESMVLFSR 431 >gi|225851134|ref|YP_002731368.1| 23S rRNA (uracil-5-)-methyltransferase [Persephonella marina EX-H1] gi|225645087|gb|ACO03273.1| 23S rRNA (uracil-5-)-methyltransferase [Persephonella marina EX-H1] Length = 421 Score = 241 bits (616), Expect = 9e-62, Method: Composition-based stats. Identities = 88/377 (23%), Positives = 161/377 (42%), Gaps = 44/377 (11%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL----QIFRSE-PIHYRMRAEFHIWHDGD 56 YE+Q+ K + L + + N+ +I+ S+ P +YR R + I + Sbjct: 73 GCDYQHITYEKQVEIKAEILLETLNRIGRLNIDRIDKIYPSKKPFNYRNRTQLKIRGEKI 132 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQ---IDYLTSQ 113 Y +++++ + ID + IN ++ + +L+ +FQ + +S Sbjct: 133 GFYM----RESRQIINIDSCLLLKEDINGMISGVRE------ILKFLIFQPEQVHIYSSS 182 Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRAN---KTKICLDRDYVDER 170 +A+V +Y + + + LR L + + R + K + L Y+ E Sbjct: 183 DGEALVKFVYQKRVR-RFPLGLKHLRSFLSEKLKGAGIYHRKDDLLKRDVLLGESYIYEE 241 Query: 171 LTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARH 230 + +R +SF Q N ++L+ VL G ++L+CG G +L AR+ Sbjct: 242 YG----GIKFRVSMDSFFQVNVYQVENLLDAVLQ-NIGDHEKAVDLFCGVGTLTLPSARY 296 Query: 231 FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY 290 + +E +V A +N N + N K RM + NR I Sbjct: 297 IKEIYGIESNPYAVNDANHNRKLNRIKNAKFFRMDA-------------NRSGGF-IAEL 342 Query: 291 RFKTIFVDPPRSGLDDATVGM---VQAYPHILYISCNPDSLCRDLSILSTTHTIERLALF 347 + + +DPPR+G+ D V + I+Y+SCNP +L RDL L +++E++ + Sbjct: 343 KPDLVIIDPPRTGVSDDLVRTFLDTDSIKRIIYVSCNPSTLARDLGYLKERYSVEKVYMI 402 Query: 348 DQFPYTRHMECGVLLVR 364 D FP T H+E V+L + Sbjct: 403 DMFPQTYHIESVVVLQK 419 >gi|26249186|ref|NP_755226.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia coli CFT073] gi|110642926|ref|YP_670656.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia coli 536] gi|191171273|ref|ZP_03032823.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli F11] gi|218690908|ref|YP_002399120.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia coli ED1a] gi|227888323|ref|ZP_04006128.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia coli 83972] gi|300976049|ref|ZP_07173264.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS 45-1] gi|300976310|ref|ZP_07173374.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS 200-1] gi|301049458|ref|ZP_07196416.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS 185-1] gi|306812335|ref|ZP_07446533.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia coli NC101] gi|331658896|ref|ZP_08359838.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli TA206] gi|34222885|sp|Q8FEG6|RUMA_ECOL6 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|123147767|sp|Q0TE74|RUMA_ECOL5 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|26109593|gb|AAN81796.1|AE016765_198 23S rRNA (Uracil-5-)-methyltransferase rumA [Escherichia coli CFT073] gi|110344518|gb|ABG70755.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli 536] gi|190908573|gb|EDV68162.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli F11] gi|218428472|emb|CAR09398.2| 23S rRNA (uracil-5)-methyltransferase [Escherichia coli ED1a] gi|227834592|gb|EEJ45058.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia coli 83972] gi|281179786|dbj|BAI56116.1| putative RNA methyltransferase [Escherichia coli SE15] gi|300298689|gb|EFJ55074.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS 185-1] gi|300308552|gb|EFJ63072.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS 200-1] gi|300410146|gb|EFJ93684.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS 45-1] gi|305854373|gb|EFM54811.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia coli NC101] gi|307554757|gb|ADN47532.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli ABU 83972] gi|315293742|gb|EFU53094.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS 153-1] gi|315298722|gb|EFU57976.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS 16-3] gi|320194924|gb|EFW69553.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia coli WV_060327] gi|324005669|gb|EGB74888.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS 57-2] gi|324015533|gb|EGB84752.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS 60-1] gi|331053478|gb|EGI25507.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli TA206] Length = 433 Score = 241 bits (616), Expect = 9e-62, Method: Composition-based stats. Identities = 84/368 (22%), Positives = 142/368 (38%), Gaps = 30/368 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWH--DGDDLY 59 + Q K L ++M + ++ P YR RA + + L Sbjct: 89 GCQQQHASVDLQQRSKSAALARLM---KHEVSEVIADVPWGYRRRARLSLNYLPKTQQLQ 145 Query: 60 HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119 + + + + + AL+ ++ A + +R L ++ + + S ++ Sbjct: 146 MGFRKAGSSDIVDVKQCPILVPQLEALLPKVRACLGSLQAMRH-LGHVELVQATSGTLMI 204 Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179 L + L A RE +L H+ + L + + E L Sbjct: 205 -LRHTAPLSSADRE---KLECFSHSEGLDLYLAPDSEILETVSG-----EMPWYDSNGLR 255 Query: 180 YRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVE 238 F Q NAG+N M+ L + +L+L+CG GNF+L LA V+ VE Sbjct: 256 LTFSPRDFIQVNAGVNQKMVARALEWLDVEPEDRVLDLFCGMGNFTLPLATQAASVVGVE 315 Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298 VE + N N + NV + +E + F + +D Sbjct: 316 GVPALVEKGQQNARLNGLQNVTFYHENLEE------------DVTKQPWAKNGFDKVLLD 363 Query: 299 PPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHM 356 P R+G +++ P I+Y+SCNP +L RD ++L +TI RLA+ D FP+T H+ Sbjct: 364 PARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHL 423 Query: 357 ECGVLLVR 364 E VL R Sbjct: 424 ESMVLFSR 431 >gi|254291652|ref|ZP_04962440.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio cholerae AM-19226] gi|150422424|gb|EDN14383.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio cholerae AM-19226] Length = 440 Score = 241 bits (616), Expect = 9e-62, Method: Composition-based stats. Identities = 88/373 (23%), Positives = 154/373 (41%), Gaps = 32/373 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFR---SEPIHYRMRAEFHIWHDGD-- 56 L Q+ K L Q+M+ F +L + S+ YR RA + D Sbjct: 90 GCDLQHLDRAGQIHHKQQALSQLMVKFAGQSLALSAPVCSDDQGYRRRARLSLMWDKKTQ 149 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116 L +Q+K + + + +NAL+ ++ A + E +L ++ + + + Sbjct: 150 QLQLGFRRKQSKAIVNVTHCPVLEPSLNALLPDLNALLS-EWSQPERLGHVELVKGDNTR 208 Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR-DYVDERLTVAG 175 +V R L + RL D + + L+ A + + Y +E Sbjct: 209 VLVL----RHLGALIEQDQQRLTDFASQNQLTLYLMLEAGELQHVQGEAPYCEET----- 259 Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRV 234 + + F Q N +N HM+ L Q +L+L+CG GNF+L LA+ V Sbjct: 260 -GSRLSFLPSHFIQVNRAVNQHMVAQALNWLEVSPQERVLDLFCGLGNFTLPLAKQAQAV 318 Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294 + VE V+ A +N N +NNV + + ++ + +F Sbjct: 319 VGVEGVDEMVQHATHNAKLNQINNVAFYQANLEQ------------DMTSASWAQQKFAK 366 Query: 295 IFVDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPY 352 + +DP R+G + + ++Y+SCNP +L RD S+LS +E+L + D FP+ Sbjct: 367 VLLDPARAGAEGIVDQLSALGAKRVVYVSCNPATLARDSQSLLSQGFRLEKLGMLDMFPH 426 Query: 353 TRHMECGVLLVRK 365 T H+E L V+K Sbjct: 427 TSHLESMALFVKK 439 >gi|229521280|ref|ZP_04410700.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Vibrio cholerae TM 11079-80] gi|229341812|gb|EEO06814.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Vibrio cholerae TM 11079-80] Length = 440 Score = 241 bits (616), Expect = 1e-61, Method: Composition-based stats. Identities = 88/373 (23%), Positives = 153/373 (41%), Gaps = 32/373 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFR---SEPIHYRMRAEFHIWHDGD-- 56 L Q+ K L Q+M+ F +L + S+ YR RA + D Sbjct: 90 GCDLQHLDRAGQIHHKQQALSQLMVKFAGQSLALSAPVCSDDQGYRRRARLSLMWDKKTQ 149 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116 L +Q+K + + +NAL+ ++ A + E +L ++ + + + Sbjct: 150 QLQLGFRRKQSKAIVNVTDCPVLEPSLNALLPDLNALLS-EWSQPERLGHVELVKGDNTR 208 Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR-DYVDERLTVAG 175 +V R L + RL D + + L+ A + + Y +E Sbjct: 209 VLVL----RHLGALIEQDQQRLTDFASQNQLTLYLMLEAGELQHVQGEAPYCEET----- 259 Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRV 234 + + F Q N +N HM+ L Q +L+L+CG GNF+L LA+ V Sbjct: 260 -GSRLSFLPSHFIQVNRAVNQHMVAQALNWLEVSPQERVLDLFCGLGNFTLPLAKQAQAV 318 Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294 + VE V+ A +N N +NNV + + ++ + +F Sbjct: 319 VGVEGVDEMVQHATHNAKLNQINNVAFYQANLEQ------------DMTSASWAQQKFAK 366 Query: 295 IFVDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPY 352 + +DP R+G + + ++Y+SCNP +L RD S+LS +E+L + D FP+ Sbjct: 367 VLLDPARAGAEGIVDQLSALGAKRVVYVSCNPATLARDSQSLLSQGFRLEKLGMLDMFPH 426 Query: 353 TRHMECGVLLVRK 365 T H+E L V+K Sbjct: 427 TSHLESMALFVKK 439 >gi|227500125|ref|ZP_03930196.1| TrmA family RNA methyltransferase [Anaerococcus tetradius ATCC 35098] gi|227217840|gb|EEI83137.1| TrmA family RNA methyltransferase [Anaerococcus tetradius ATCC 35098] Length = 505 Score = 241 bits (616), Expect = 1e-61, Method: Composition-based stats. Identities = 74/375 (19%), Positives = 159/375 (42%), Gaps = 38/375 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLA---FQVPNLQIFRSEPIHYRMRAEFHIWHDGDDL 58 T++ Y+QQL K + ++ + + ++I S ++YR + + +GD Sbjct: 76 GCTIMDINYQQQLKLKTNLIKNAIKKTCKIDLDEIEIIPSRQLNYRNKIRLQVDENGDLA 135 Query: 59 YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAI 118 Y+ + + + + I+ + + I + ++ + K+ + + S + + I Sbjct: 136 YN---KKASNDLVAIEDCLLANEHIRKKLPQIQKISQDINKKFGKIIKEISIRS-NGEKI 191 Query: 119 VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTL 178 + IY + L + L + + K+ + + +Y+ R+ + Sbjct: 192 LLNIYTK--------DEKTLYNYLKDKNKDFNINLTNKKSTLTIGDNYLIHRV----KDK 239 Query: 179 IYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVE 238 ++ ++ F Q N ++ + LL+L+CG+G S+ LA D ++ +E Sbjct: 240 KFKISKDDFFQVNDSQIENLYSEA-SQYLEKDKKLLDLFCGSGISSMALAN--DHIVGIE 296 Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298 I K +++ A N AN + + K + ++ Q I + T+ +D Sbjct: 297 INKSAIKDAIENAEANGLKDYKFIAKNANYIDQKF-------------IKKEKIGTVTID 343 Query: 299 PPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRH 355 PPR+GLD + + +I+YISCNP +L RD+ + + ++R+ D F + H Sbjct: 344 PPRAGLDKEIIKTLAKTQIKNIIYISCNPQTLARDIKRFMDRGYELKRIKAVDMFAQSMH 403 Query: 356 MECGVLLVRKPSGWH 370 +E LL + + H Sbjct: 404 VETVALLSKLNTEHH 418 >gi|153826889|ref|ZP_01979556.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio cholerae MZO-2] gi|149739252|gb|EDM53514.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio cholerae MZO-2] Length = 440 Score = 241 bits (616), Expect = 1e-61, Method: Composition-based stats. Identities = 87/373 (23%), Positives = 152/373 (40%), Gaps = 32/373 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFR---SEPIHYRMRAEFHIWHDGD-- 56 L Q+ K L Q+M+ F +L + S+ YR RA + D Sbjct: 90 GCDLQHLDRAGQIHHKQQALSQLMVKFAGQSLALSAPVCSDDQGYRRRARLSLMWDKKTQ 149 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116 L +Q+K + + +NAL+ ++ A + E +L ++ + + + Sbjct: 150 QLQLGFRRKQSKAIVNVTDCPVLEPSLNALLPDLNALLS-EWSQPERLGHVELVKGDNTR 208 Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR-DYVDERLTVAG 175 +V R L + RL D + + L+ A + + Y +E Sbjct: 209 VLVL----RHLGALIEQDQQRLTDFASQNQLTLYLMPEAGELQHVQGEAPYCEET----- 259 Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRV 234 + + F Q N +N M+ L Q +L+L+CG GNF+L LA+ V Sbjct: 260 -GSRLSFLPSHFIQVNRAVNQQMVAQALNWLEVSPQERVLDLFCGLGNFTLPLAKQAQAV 318 Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294 + VE V+ A +N N +NNV + + ++ + +F Sbjct: 319 VGVEGVDEMVQHATHNAKLNQINNVAFYQANLEQ------------DMTSASWAQQKFAK 366 Query: 295 IFVDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPY 352 + +DP R+G + + ++Y+SCNP +L RD S+LS +E+L + D FP+ Sbjct: 367 VLLDPARAGAEGIVDQLSALGAKRVVYVSCNPATLARDSQSLLSQGFRLEKLGMLDMFPH 426 Query: 353 TRHMECGVLLVRK 365 T H+E L V+K Sbjct: 427 TSHLESMALFVKK 439 >gi|237709870|ref|ZP_04540351.1| RNA methyltransferase [Bacteroides sp. 9_1_42FAA] gi|229455963|gb|EEO61684.1| RNA methyltransferase [Bacteroides sp. 9_1_42FAA] Length = 473 Score = 241 bits (616), Expect = 1e-61, Method: Composition-based stats. Identities = 80/404 (19%), Positives = 154/404 (38%), Gaps = 62/404 (15%) Query: 4 TLLIDQYEQQLAEKVDRLRQMML---AFQVPNLQIFRSEPIH--YRMRAEFH-------- 50 L Y +Q+ K ++ + ++P + YR + EF Sbjct: 89 CLP---YTEQIKYKQKQVTDNLTRIGKIELPEISPIMGSEKTEFYRNKLEFTFSNKRWLT 145 Query: 51 -------IWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL---- 99 + +D + + + ID + N + + Sbjct: 146 EEEVKEDVKYDQMNAVGFHIPGAFDKVLAIDKCWLQDDISNQIRNAIRDYAYEHNYSFFN 205 Query: 100 LRAK---LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQ-----L 151 LR++ L + TS + + +V L+ +++++ + RL + R QI + Sbjct: 206 LRSQEGMLRNLMIRTSSTGELMV-LLQCKIVEEGELDLMKRLLTFVAERFPQITSLLYVV 264 Query: 152 IGRANKT------KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA 205 + N T + D++ E + L ++ SF Q N+G + L V Sbjct: 265 NNKCNDTINDLDVMVFKGNDHIFEEM----EGLRFKIGAKSFYQTNSGQAYN-LYKVARN 319 Query: 206 TKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVR 263 + G+ + +LY G G + ++R +V+ +E ++E A+ N A N ++N Sbjct: 320 FARLTGNELVYDLYTGTGTIANFVSRQAKKVIGIEYVPEAIEDAKVNSAINGIDNTLFYA 379 Query: 264 MSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYI 321 K+ ++ R I DPPR+G+ D + + I+Y+ Sbjct: 380 GDMKDILT-----------QEFISQHGRPDVIITDPPRAGMHDDVINTILFAEPQRIVYV 428 Query: 322 SCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 SCNP + RDLS+L + + + D FP+T H+E VLL ++ Sbjct: 429 SCNPATQARDLSLLDAKYKVMAVQPVDMFPHTHHVENVVLLEKR 472 >gi|297581076|ref|ZP_06943001.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio cholerae RC385] gi|297534902|gb|EFH73738.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio cholerae RC385] Length = 440 Score = 241 bits (616), Expect = 1e-61, Method: Composition-based stats. Identities = 87/373 (23%), Positives = 153/373 (41%), Gaps = 32/373 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFR---SEPIHYRMRAEFHIWHDGD-- 56 L Q+ K L Q+M+ F +L + S+ YR RA + D Sbjct: 90 GCDLQHLDRAGQIHHKQQALSQLMVKFAGQSLALSAPVCSDDQGYRRRARLSLMWDKKTQ 149 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116 L +Q+K + + +NAL+ ++ A + + +L ++ + + + Sbjct: 150 QLQLGFRRKQSKAIVNVTDCPVLEPSLNALLPDLNALLS-KWSQPERLGHVELVKGDNTR 208 Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR-DYVDERLTVAG 175 +V R L + RL D + + L+ A + + Y +E Sbjct: 209 VLVL----RHLGALIEQDQQRLTDFASQNQLTLYLMPEAGELQHVQGEAPYCEET----- 259 Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRV 234 + + F Q N +N HM+ L Q +L+L+CG GNF+L LA+ V Sbjct: 260 -GSRLSFLPSHFIQVNRAVNQHMVAQALNWLEVSPQERVLDLFCGLGNFTLPLAKQAQAV 318 Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294 + VE V+ A +N N +NNV + + ++ + +F Sbjct: 319 VGVEGVDEMVQHATHNAKLNQINNVAFYQANLEQ------------DMTSASWAQQKFAK 366 Query: 295 IFVDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPY 352 + +DP R+G + + ++Y+SCNP +L RD S+LS +E+L + D FP+ Sbjct: 367 VLLDPARAGAEGIVDQLSALGAKRVVYVSCNPATLARDSQSLLSQGFRLEKLGMLDMFPH 426 Query: 353 TRHMECGVLLVRK 365 T H+E L V+K Sbjct: 427 TSHLESMALFVKK 439 >gi|218706281|ref|YP_002413800.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia coli UMN026] gi|293406277|ref|ZP_06650203.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Escherichia coli FVEC1412] gi|298382014|ref|ZP_06991611.1| TrmA family RNA methyltransferase [Escherichia coli FVEC1302] gi|300898161|ref|ZP_07116523.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS 198-1] gi|218433378|emb|CAR14280.1| 23S rRNA (uracil-5)-methyltransferase [Escherichia coli UMN026] gi|291426283|gb|EFE99315.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Escherichia coli FVEC1412] gi|298277154|gb|EFI18670.1| TrmA family RNA methyltransferase [Escherichia coli FVEC1302] gi|300358136|gb|EFJ74006.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS 198-1] Length = 433 Score = 241 bits (616), Expect = 1e-61, Method: Composition-based stats. Identities = 84/357 (23%), Positives = 141/357 (39%), Gaps = 30/357 (8%) Query: 13 QLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWH--DGDDLYHIMFDQQTKER 70 Q K L ++M + ++ P YR RA + + L + + Sbjct: 100 QQRSKSAALARLM---KHEVSEVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDI 156 Query: 71 MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDA 130 + + + AL+ ++ A + +R L ++ + + S ++ L + L A Sbjct: 157 VDVKQCPILVPQLEALLPKVRACLGSLQAMRH-LGHVELVQATSGTLMI-LRHTAPLSSA 214 Query: 131 WRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQP 190 RE R H+ + L + + E L F Q Sbjct: 215 DREKLERFS---HSEGLDLYLAPDSEILETVSG-----EMPWYDSNGLRLTFSPRDFIQV 266 Query: 191 NAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249 NAG+N M+ L + +L+L+CG GNF+L LA V+ VE VE + Sbjct: 267 NAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQ 326 Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309 N N ++NV + +E + F + +DP R+G Sbjct: 327 NARLNGLHNVTFYHENLEE------------DVTKQPWAKNGFDKVLLDPARAGAAGVMQ 374 Query: 310 GMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 +++ P I+Y+SCNP +L RD ++L +TI RLA+ D FP+T H+E VL R Sbjct: 375 QIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSR 431 >gi|282882595|ref|ZP_06291214.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Peptoniphilus lacrimalis 315-B] gi|281297570|gb|EFA90047.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Peptoniphilus lacrimalis 315-B] Length = 518 Score = 241 bits (616), Expect = 1e-61, Method: Composition-based stats. Identities = 80/373 (21%), Positives = 158/373 (42%), Gaps = 35/373 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFR----SEPIHYRMRAEFHIWHDGDD 57 L +YE+ L K + + ++++ + + +YR +F + + Sbjct: 78 GCDFLNYKYEKSLDWKKQSVNNKLQRISELDIKVSKVNSSEKTFNYRNNMQFQV----KN 133 Query: 58 LYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQA 117 ++ + +KE + I++ + S N + + LE K+ + T+ DQ Sbjct: 134 GKIGLYMKNSKEIVPIEHCLMQSTNANKTLKILTKFKNLE-----KIKTLGIRTNYKDQV 188 Query: 118 IVTLIYHRLLDDAWRECAIRLRDALHARKYQIQL---IGRANKTKICLDRDYVDERLTVA 174 ++ + ++ + + + I ++ + ++Y++E++ Sbjct: 189 MLIISSKEKINKLNLILGDLIDANVVSIYENINNRKNAHYGDEFNLLYGQEYLEEKI--- 245 Query: 175 GRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDR 233 L Y+ SF Q N ++ + + + + + +LY G G SL +A + Sbjct: 246 -NKLYYKLSPASFFQVNREQAENLYNKAMEFLQVKENEKIADLYSGVGTLSLEIASRKAQ 304 Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293 L VEI + ++E AR N N + + + S+E + ++ + + Sbjct: 305 TLGVEIVEEAIEDARINAQKNKLQ-ARFICGKSEEILEKIQTD-----------EKIKMD 352 Query: 294 TIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFP 351 I VDPPR G+D V + Y I+YISCNP +L RDL IL + +E++ +FD FP Sbjct: 353 KILVDPPRKGMDKKLVDYLNKNSYEKIVYISCNPATLARDLKILKEKYKVEKVEIFDLFP 412 Query: 352 YTRHMECGVLLVR 364 YT H+E LL + Sbjct: 413 YTSHVEVITLLSK 425 >gi|227877151|ref|ZP_03995225.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus crispatus JV-V01] gi|256848986|ref|ZP_05554420.1| RNA methyltransferase [Lactobacillus crispatus MV-1A-US] gi|262047127|ref|ZP_06020086.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus crispatus MV-3A-US] gi|227863205|gb|EEJ70650.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus crispatus JV-V01] gi|256714525|gb|EEU29512.1| RNA methyltransferase [Lactobacillus crispatus MV-1A-US] gi|260572704|gb|EEX29265.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus crispatus MV-3A-US] Length = 462 Score = 241 bits (616), Expect = 1e-61, Method: Composition-based stats. Identities = 75/386 (19%), Positives = 145/386 (37%), Gaps = 40/386 (10%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNL-------QIFRSEPIHYRMRAEFHIWHDGDD 57 L Y++QL K + + + + + N I +P HYR +A++ I D Sbjct: 91 LAHLSYDKQLEFKKNNMLESLRKYHPRNYNKYKVKNTIAAPDPWHYRNKAQYQIEKDHGQ 150 Query: 58 LYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLFQ 106 L +F + + + S LI L + + R P ++ + + Sbjct: 151 LKLGLFAPNSHRLIDLPKMPTQSEDTQKTERKIKVLIEKLHVPVANYRRHLPGIKTVVVR 210 Query: 107 IDYLTSQSDQAIVTLIYH-RLLDDAWRECAI--RLRDALHARKYQIQLIGRANKTKICLD 163 T + ++T+ + + L +E + NKT+ L Sbjct: 211 QSEATKEIQVTLITIGHKIKNLIPLAKEIMKLDHVVSVYQNETEWQNPQVWGNKTEKLLG 270 Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGN 222 ++ + E + L +F Q N +++ L L++ Y G G Sbjct: 271 KNQITEEILGKKFAL----SPRAFFQLNPVQTINLYSEALKYLDLTPDQTLIDAYSGVGT 326 Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282 ++ A +V+ +E +V+ A++N+ NH+ N ++ S ++ L Sbjct: 327 LGILAADRVKQVVGIETIPEAVKDAQHNVELNHIKNADYIQGSVEKV------------L 374 Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLSILSTTHT 340 ++ + VDPPR+GL + + + +YISCNP +L +DL +LS + Sbjct: 375 PELQNSGVAINALIVDPPRTGLAKSLIKTLLRVKPETFVYISCNPSTLAQDLVLLSEAYD 434 Query: 341 IERLALFDQFPYTRHMECGVLLVRKP 366 + + D P T E LV + Sbjct: 435 VRVIQNVDMLPQTPRCEAIAKLVLRK 460 >gi|311693681|gb|ADP96554.1| 23S rRNA 5-methyluridine methyltransferase [marine bacterium HP15] Length = 436 Score = 241 bits (616), Expect = 1e-61, Method: Composition-based stats. Identities = 88/385 (22%), Positives = 151/385 (39%), Gaps = 39/385 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-----IFRSEPIHYRMRAEFHIWHDG- 55 +L + Q+ K + LR+ F + + E + YR +A + + Sbjct: 73 GCSLQHMSGDAQIEFKENTLREHFAHFGGIEPEEWIAPLRSEESLGYRRKARLGVRYVKA 132 Query: 56 -DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQS 114 + + +++ ID + I ++ + + +++ Q++ Sbjct: 133 RESVLVGFREKRNSFLTDIDRCVVLDPRIGERILPLRNMLHDLEAY-SRIPQVEIACGDD 191 Query: 115 DQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL-----DRDYVDE 169 +V R +D+ +L A + I L + T + RD +E Sbjct: 192 VAVMV----FRNMDELSVGDREKLIAFGQAHELHIYLQPKGPDTVHRIWPESAGRD--EE 245 Query: 170 RLT--VAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLV 226 RL+ + L R FTQ NAGIN M+ + G+ +L+L+CG GNF+L Sbjct: 246 RLSYRLDEFDLTMRFHPMDFTQVNAGINRAMVHRAVEWLDVQPGERVLDLFCGLGNFTLP 305 Query: 227 LARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNRLKDI 285 LA +V+ VE + V R N N ++NV +FT Sbjct: 306 LATRGGQVVGVEGDETMVVRGRENAELNGLDNVAFHGADLHGDFT-------------GQ 352 Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSIL-STTHTIER 343 F I +DPPRSG ++ + I+Y+SCNP +L RD ++ + + R Sbjct: 353 SWAKEGFDKILIDPPRSGAEEICKYLTAFGAQKIVYVSCNPATLARDAGVMVRNGYRLVR 412 Query: 344 LALFDQFPYTRHMECGVLLVRKPSG 368 + D FP+T H+E L K SG Sbjct: 413 AGVMDMFPHTTHVESIALFE-KDSG 436 >gi|282900616|ref|ZP_06308558.1| 23S rRNA methyltransferase/RumA [Cylindrospermopsis raciborskii CS-505] gi|281194416|gb|EFA69371.1| 23S rRNA methyltransferase/RumA [Cylindrospermopsis raciborskii CS-505] Length = 455 Score = 241 bits (616), Expect = 1e-61, Method: Composition-based stats. Identities = 75/390 (19%), Positives = 138/390 (35%), Gaps = 47/390 (12%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDG- 55 YE QL K +++ Q + + P+ YR +A + I Sbjct: 86 GCQWQHINYEYQLQVKQNQVIQALERIGNFVNPPVAPVLTTKSPLGYRNKATYPIKTSST 145 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-----------LRAKL 104 + + + + + ++ +N L+ E+ I+ + +R Sbjct: 146 GQVQAGYYQKGSHLLINLNQCPVQDPRLNPLLTEIKQDIQKQGWSVYDENRHQGEIRHLG 205 Query: 105 FQIDYLTSQSDQAIVTLIYHRLLDD----AWRECAIRLRDALHARKYQIQLIGRANKTKI 160 +I T + +V + W +L T Sbjct: 206 LRIGRYTGEILLTLVVKNGQLPGIETQAQQWLHRYPQLVGICLNHNGDRTNAIFGKVTTC 265 Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYC 218 Y+ E+ L ++ ++F Q +LE V+ + +QGD L++ YC Sbjct: 266 IAGVPYLREQFA----GLEFKVRPDTFFQVYTETAEALLE-VIQSQLNLQGDEILVDAYC 320 Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278 G G +L LA+ + + +EI +VE A YN N + N K + ++ + Sbjct: 321 GIGTLTLPLAKQARQTIGLEIQPAAVEQAIYNAQHNGITNAKFQIGAVEDILPKL----- 375 Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILS 336 + +DPPR G + + + I YISC +L RDLS+L Sbjct: 376 ----------DTLPDIVLLDPPRKGCEPIVLQSLLKLKPKKIAYISCKASTLARDLSLLC 425 Query: 337 TT--HTIERLALFDQFPYTRHMECGVLLVR 364 + + ++++ D FP T H+E L R Sbjct: 426 ASGEYKLKKVQPADFFPQTPHVETVAFLER 455 >gi|153831307|ref|ZP_01983974.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio cholerae 623-39] gi|148873209|gb|EDL71344.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio cholerae 623-39] Length = 440 Score = 241 bits (616), Expect = 1e-61, Method: Composition-based stats. Identities = 88/373 (23%), Positives = 154/373 (41%), Gaps = 32/373 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFR---SEPIHYRMRAEFHIWHDGD-- 56 L Q+ K L Q+M+ F +L + S+ YR RA + D Sbjct: 90 GCDLQHLDRAGQIHHKQQALSQLMVKFAGQSLALSAPVCSDDQGYRRRARLSLMWDKKTQ 149 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116 L +Q+K + + + +NAL+ ++ A + E +L ++ + + + Sbjct: 150 QLQLGFRRKQSKAIVNVTHCPVLEPSLNALLPDLNALLS-EWSQPERLGHVELVKGDNTR 208 Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR-DYVDERLTVAG 175 +V R L + RL D + + L+ A + + Y +E Sbjct: 209 VLVL----RHLGALIEQDQQRLTDFASQNQLTLYLMLEAGELQHVQGEAPYCEET----- 259 Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRV 234 + + F Q N +N HM+ L Q +L+L+CG GNF+L LA+ V Sbjct: 260 -GSRLSFLPSHFIQVNRAVNQHMVAQALNWLEVSPQERVLDLFCGLGNFTLPLAKQAQAV 318 Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294 + VE V+ A +N N +NNV + + ++ + +F Sbjct: 319 VGVEGVDEMVQHATHNAKLNQINNVAFYQANLEQ------------DMTSASWAQQKFAK 366 Query: 295 IFVDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPY 352 + +DP R+G + + ++Y+SCNP +L RD S+LS +E+L + D FP+ Sbjct: 367 VLLDPARAGAEGIVDQLSALGAKRVVYVSCNPATLARDSQSLLSQGFRLEKLGMLDMFPH 426 Query: 353 TRHMECGVLLVRK 365 T H+E L V+K Sbjct: 427 TSHLESMALFVKK 439 >gi|327484944|gb|AEA79351.1| 23S rRNA (Uracil-5-) -methyltransferase RumA [Vibrio cholerae LMA3894-4] Length = 440 Score = 241 bits (616), Expect = 1e-61, Method: Composition-based stats. Identities = 87/373 (23%), Positives = 153/373 (41%), Gaps = 32/373 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFR---SEPIHYRMRAEFHIWHDGD-- 56 L Q+ K L Q+M+ F +L + S+ YR RA + D Sbjct: 90 GCDLQHLDRAGQIHHKQQALSQLMVKFAGQSLALSAPVCSDDQGYRRRARLSLMWDKKTQ 149 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116 L +Q+K + + + +NAL+ ++ A + E +L ++ + + + Sbjct: 150 QLQLGFRRKQSKAIVNVTHCPVLEPSLNALLPDLNALLS-EWSQPERLGHVELVKGDNTR 208 Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR-DYVDERLTVAG 175 +V R L + RL D + + L+ A + + Y +E Sbjct: 209 VLVL----RHLGALIEQDQQRLTDFASQNQLTLYLMPEAGELQHVQGEAPYCEET----- 259 Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRV 234 + + F Q N +N M+ L Q +L+L+CG GNF+L LA+ V Sbjct: 260 -GSRLSFLPSHFIQVNRAVNQQMVAQALNWLEVSPQERVLDLFCGLGNFTLPLAKQAQAV 318 Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294 + VE V+ A +N N +NNV + + ++ + +F Sbjct: 319 VGVEGVDEMVQHATHNAKLNQINNVAFYQANLEQ------------DMTSASWAQQKFAK 366 Query: 295 IFVDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPY 352 + +DP R+G + + ++Y+SCNP +L RD S+LS +E+L + D FP+ Sbjct: 367 VLLDPARAGAEGIVDQLSALGAKRVVYVSCNPATLARDSQSLLSQGFRLEKLGMLDMFPH 426 Query: 353 TRHMECGVLLVRK 365 T H+E L V+K Sbjct: 427 TSHLESMALFVKK 439 >gi|331648510|ref|ZP_08349598.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli M605] gi|330908811|gb|EGH37325.1| 23S rRNA (Uracil-5-) -methyltransferase RumA [Escherichia coli AA86] gi|331042257|gb|EGI14399.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli M605] Length = 433 Score = 241 bits (616), Expect = 1e-61, Method: Composition-based stats. Identities = 84/368 (22%), Positives = 142/368 (38%), Gaps = 30/368 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWH--DGDDLY 59 + Q K L ++M + ++ P YR RA + + L Sbjct: 89 GCQQQHASVDLQQRSKSAALARLM---KHEVSEVIADVPWGYRRRARLSLNYLPKTQQLQ 145 Query: 60 HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119 + + + + + AL+ ++ A + +R L ++ + + S ++ Sbjct: 146 MGFRKAGSSDIVDVKQCPILVPQLEALLPKVRACLGSLQAMRH-LGHVELVQATSGTLMI 204 Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179 L + L A RE +L H+ + L + + E L Sbjct: 205 -LRHTAPLSSADRE---KLECFSHSEGLDLYLAPDSEILETVSG-----EMPWYDSNGLR 255 Query: 180 YRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVE 238 F Q NAG+N M+ L + +L+L+CG GNF+L LA V+ VE Sbjct: 256 LTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVE 315 Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298 VE + N N + NV + +E + F + +D Sbjct: 316 GVPALVEKGQQNARLNGLQNVTFYHENLEE------------DVTKQPWAKNGFDKVLLD 363 Query: 299 PPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHM 356 P R+G +++ P I+Y+SCNP +L RD ++L +TI RLA+ D FP+T H+ Sbjct: 364 PARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHL 423 Query: 357 ECGVLLVR 364 E VL R Sbjct: 424 ESMVLFSR 431 >gi|256842705|ref|ZP_05548193.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus crispatus 125-2-CHN] gi|293380255|ref|ZP_06626333.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus crispatus 214-1] gi|256614125|gb|EEU19326.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus crispatus 125-2-CHN] gi|290923164|gb|EFE00089.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus crispatus 214-1] Length = 462 Score = 241 bits (616), Expect = 1e-61, Method: Composition-based stats. Identities = 75/386 (19%), Positives = 146/386 (37%), Gaps = 40/386 (10%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNL-------QIFRSEPIHYRMRAEFHIWHDGDD 57 L+ Y++QL K + + + + + N I +P HYR +A++ I D Sbjct: 91 LVHLSYDKQLEFKKNNMLESLRKYHPRNYNKYKVKNTIAAPDPWHYRNKAQYQIEKDHGQ 150 Query: 58 LYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLFQ 106 L +F + + + S LI L + + R P ++ + + Sbjct: 151 LKLGLFAPNSHRLIDLPKMPTQSEDTQKTERKIKVLIEKLHVPVANYRRHLPGIKTVVVR 210 Query: 107 IDYLTSQSDQAIVTLIYH-RLLDDAWRECAI--RLRDALHARKYQIQLIGRANKTKICLD 163 T + ++T+ + + L +E + NKT+ L Sbjct: 211 QSEATKEIQVTLITIGHKIKNLIPLAKEIMKLDHVVSVYQNETEWQNPQVWGNKTEKLLG 270 Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGN 222 ++ + E + L +F Q N +++ L L++ Y G G Sbjct: 271 KNQITEEILGKKFAL----SPRAFFQLNPVQTINLYSEALKYLDLTPDQTLIDAYSGVGT 326 Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282 ++ A +V+ +E +V+ A++N+ NH+ N ++ S ++ L Sbjct: 327 LGILAADRVKQVVGIETIPEAVKDAQHNVELNHIKNADYIQGSVEKI------------L 374 Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLSILSTTHT 340 ++ + VDPPR+GL + + + +YISCNP +L +DL +LS + Sbjct: 375 PELQNSGVAINALIVDPPRTGLAKSLIKTLLRVKPETFVYISCNPSTLAQDLVLLSEAYD 434 Query: 341 IERLALFDQFPYTRHMECGVLLVRKP 366 + + D P T E LV + Sbjct: 435 VRVIQNVDMLPQTPRCEAIAKLVLRK 460 >gi|149192073|ref|ZP_01870298.1| 23S rRNA (uracil-5-)-methyltransferase [Vibrio shilonii AK1] gi|148834098|gb|EDL51110.1| 23S rRNA (uracil-5-)-methyltransferase [Vibrio shilonii AK1] Length = 437 Score = 241 bits (616), Expect = 1e-61, Method: Composition-based stats. Identities = 90/372 (24%), Positives = 157/372 (42%), Gaps = 33/372 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRS---EPIHYRMRAEFHIWHDGDDL 58 + +QQ+ K L Q+M ++ + S E + YR RA I D Sbjct: 90 GCNQQHVERQQQIENKQVALSQLMNKLAGQSVPLASSITGEGLGYRRRARLSIHLDKQRN 149 Query: 59 YHIMFDQ-QTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQA 117 + F + Q+ + ID+ + +NAL+ + ++ L ++ + + Sbjct: 150 LVMGFRRKQSNHIVEIDHCPVLNAQLNALIPPLRDIFAGFKQQQS-LGHLELVMGDNGPV 208 Query: 118 IVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD-RDYVDERLTVAGR 176 +V R + RL D ++ + L+ + + ++ + Y E G Sbjct: 209 VVV----RHIKPLTNHDQKRLVDFADSQALTLYLMPESGQLQLITGEQPYYSEV----GV 260 Query: 177 TLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVL 235 L + + F Q N IN M+ L D +L+L+CG GNF+L LA+ RV+ Sbjct: 261 ELPF--LPTHFIQVNREINSKMVAQALEWLAPESSDNVLDLFCGLGNFTLPLAKLCQRVV 318 Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295 VE + V+ A+ N A NH+ NV+ + + ++ L ++ +F I Sbjct: 319 GVEGIQDMVDWAQQNAALNHLTNVEFYQANLEQ------------DLSEMSWAKQQFDKI 366 Query: 296 FVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPY 352 +DP R+G + V A +LY+SCNP +L RD L + + RL + D FP+ Sbjct: 367 LLDPARAGAS-GVIDQVSALGATRVLYVSCNPATLARDTQSLIEQGYKLVRLGMMDMFPH 425 Query: 353 TRHMECGVLLVR 364 T H+E L + Sbjct: 426 TSHLESMALFEK 437 >gi|82778167|ref|YP_404516.1| 23S rRNA 5-methyluridine methyltransferase [Shigella dysenteriae Sd197] gi|309786100|ref|ZP_07680729.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Shigella dysenteriae 1617] gi|91207812|sp|Q32CD0|RUMA_SHIDS RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|81242315|gb|ABB63025.1| putative enzyme [Shigella dysenteriae Sd197] gi|308926211|gb|EFP71689.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Shigella dysenteriae 1617] Length = 433 Score = 241 bits (616), Expect = 1e-61, Method: Composition-based stats. Identities = 84/368 (22%), Positives = 141/368 (38%), Gaps = 30/368 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWH--DGDDLY 59 + Q K L ++M + ++ P YR RA + + L Sbjct: 89 GCQQQHASVDLQQRSKSAALARLM---KHEVSEVIADVPWGYRRRARLSLNYLPKTQQLQ 145 Query: 60 HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119 + + + + + AL+ ++ A + +R L ++ + + S ++ Sbjct: 146 MGFRKAGSSDIVDVKQCPILVPQLEALLPKVRACLGSLQAMRH-LGHVELVQATSGTLMI 204 Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179 L + L A RE R H+ + L + + E L Sbjct: 205 -LRHTAPLSSADREKLERFS---HSEGLDLYLAPDSEIFETVSG-----EMPWYDSNGLR 255 Query: 180 YRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVE 238 F Q NAG+N M+ L + +L+L+CG GNF+L LA V+ VE Sbjct: 256 LTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVE 315 Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298 VE + N N + NV + +E + F + +D Sbjct: 316 GVPALVEKGQQNARLNGLQNVTFYHENLEE------------DVTKQPWAKNGFDKVLLD 363 Query: 299 PPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHM 356 P R+G +++ P I+Y+SCNP +L RD ++L +TI RLA+ D FP+T H+ Sbjct: 364 PARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHL 423 Query: 357 ECGVLLVR 364 E VL R Sbjct: 424 ESMVLFSR 431 >gi|317501056|ref|ZP_07959262.1| 23S rRNA (Uracil-5-)-methyltransferase RumA [Lachnospiraceae bacterium 8_1_57FAA] gi|316897443|gb|EFV19508.1| 23S rRNA (Uracil-5-)-methyltransferase RumA [Lachnospiraceae bacterium 8_1_57FAA] Length = 460 Score = 241 bits (616), Expect = 1e-61, Method: Composition-based stats. Identities = 84/392 (21%), Positives = 153/392 (39%), Gaps = 48/392 (12%) Query: 2 SGTLL-IDQYEQQLAEKVDRLRQMMLAFQVPN--LQIFRSEP--IHYRMRAEFHI---WH 53 G + YE+Q+ K ++R++M + ++ P YR + EF + Sbjct: 84 GGCMYQTMPYEEQMKMKEGQIRRIMDEAVDGEYLFEGVKASPKEFAYRNKMEFSFGDEYK 143 Query: 54 DGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEP-----------LLRA 102 DG + T + + +N +++ ++ + LR Sbjct: 144 DGPLSLGLHKKGSTYDVLTASDCKLVHKDMNKILVCVLEYFKERKVSYYKKMQHVGYLRH 203 Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRL------RDALHARKYQIQLIGRAN 156 L + T + +VT E ++L LH + + +++ Sbjct: 204 LLLRRGDTTGEILVNLVTTTQEEHDLSELTEQLLQLPLEGKIVGILHILNDSLSDVVKSD 263 Query: 157 KTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG-DLLE 215 +T++ +D+ E+L L ++ SF QPN + E V I + + Sbjct: 264 ETRVLYGQDFFYEKLL----GLQFKITPFSFFQPNTKGAEVLYETVREYIGDIHDLTVFD 319 Query: 216 LYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275 L+ G G S VLA +V+ VEI + +VEAA+ N N ++N + + E ++ Sbjct: 320 LFSGTGTISQVLAPVAKKVIGVEIVEEAVEAAKENAERNGLSNCEFIAGDVFEVLDDIKE 379 Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLS 333 + I +DPPR G+ + + I+YISC SL RDL Sbjct: 380 ---------------KPDVIILDPPRDGIHPKALPKILDYGVDRIVYISCKMTSLARDLE 424 Query: 334 ILST-THTIERLALFDQFPYTRHMECGVLLVR 364 ++ +T+E++ DQF T H+E L+ R Sbjct: 425 LIQQRGYTVEKMTAVDQFCETVHVETVCLMSR 456 >gi|268611139|ref|ZP_06144866.1| RNA methyltransferase [Ruminococcus flavefaciens FD-1] Length = 416 Score = 241 bits (616), Expect = 1e-61, Method: Composition-based stats. Identities = 78/401 (19%), Positives = 140/401 (34%), Gaps = 51/401 (12%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ----VPNLQIFRSEP-IHYRMRAEFHI--WHD 54 + YE + K + + + L IF S+ YR +A++ + Sbjct: 32 GCVFMHMSYEAECRIKSNIVTEAFARIGHLVPKEILPIFSSDSIEGYRNKAQYPYADYKY 91 Query: 55 GDD---LYHIMFDQQTKERMRIDYFMPGS----LLINALMIEM----------MATIRLE 97 D+ + ++ + + Y + ++ E+ Sbjct: 92 TDNTVFPKFGFYAPRSHRLVPVTYCVLQPAAFGDILRHCEEELGTADFNAITPYNEESGN 151 Query: 98 PLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGR--- 154 +LR + + + + VT + + + L H K + + Sbjct: 152 GVLRHLYIRQGFHSKEIMVCFVTAKDNNHIRKQLTDLGNTLIADTHEIKSVMLNVNPQKT 211 Query: 155 ----ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ 210 KT + +D + + L +L SF Q N + + Sbjct: 212 NVILGKKTVCLIGKDTIADTLCGVPVSL----SPQSFYQVNTAQAEKLFAEAKRLAAPKK 267 Query: 211 GDLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269 +LL +LYCG G L +A +V+ VE+ ++E A+ N ++N + + E Sbjct: 268 DELLLDLYCGAGAIGLSMADTVGKVIGVEVVPQAIEDAKANAKRAGISNAEFFAGDAGEI 327 Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDS 327 E + I +DPPR G D T+ A I+ ISCNP + Sbjct: 328 AAKFAAE------------GRKPDIIVLDPPRKGCDTLTLDACLEMAPSRIVMISCNPST 375 Query: 328 LCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVRKPS 367 RD + L T++ L D FP T+H+EC VL+ R+ S Sbjct: 376 AARDAAYLCENGFTLDVLRPADFFPRTKHVECVVLMSRQKS 416 >gi|237725460|ref|ZP_04555941.1| RNA methyltransferase [Bacteroides sp. D4] gi|229436147|gb|EEO46224.1| RNA methyltransferase [Bacteroides dorei 5_1_36/D4] Length = 473 Score = 241 bits (616), Expect = 1e-61, Method: Composition-based stats. Identities = 79/404 (19%), Positives = 153/404 (37%), Gaps = 62/404 (15%) Query: 4 TLLIDQYEQQLAEKVDRLRQMML---AFQVPNLQIFRSEPIH--YRMRAEFH-------- 50 L Y +Q+ K ++ + ++P + YR + EF Sbjct: 89 CLP---YTEQIKYKQKQVTDNLTRIGKIELPEISPIMGSEKTEFYRNKLEFTFSNKRWLT 145 Query: 51 -------IWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL---- 99 + +D + + + ID + N + + Sbjct: 146 EEEVKEDVKYDQMNAVGFHIPGAFDKVLAIDKCWLQDDISNQIRNAIRDYAYEHNYSFFN 205 Query: 100 LRAK---LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQ-----L 151 LR++ L + TS + + +V L+ +++++ + RL + QI + Sbjct: 206 LRSQEGMLRNLMIRTSSTGELMV-LLQCKIVEEGELDLMKRLLTFVAEHFPQITSLLYVV 264 Query: 152 IGRANKT------KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA 205 + N T + D++ E + L ++ SF Q N+G + L V Sbjct: 265 NNKCNDTINDLDVMVFKGNDHIFEEM----EGLRFKIGAKSFYQTNSGQAYN-LYKVARN 319 Query: 206 TKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVR 263 + G+ + +LY G G + ++R +V+ +E ++E A+ N A N ++N Sbjct: 320 FARLTGNELVYDLYTGTGTIANFVSRQAKKVIGIEYVPEAIEDAKVNSAINGIDNTLFYA 379 Query: 264 MSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYI 321 K+ ++ R I DPPR+G+ D + + I+Y+ Sbjct: 380 GDMKDILT-----------QEFISQHGRPDVIITDPPRAGMHDDVINTILFAEPQRIVYV 428 Query: 322 SCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 SCNP + RDLS+L + + + D FP+T H+E VLL ++ Sbjct: 429 SCNPATQARDLSLLDAKYKVMAVQPVDMFPHTHHVENVVLLEKR 472 >gi|182419838|ref|ZP_02951078.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium butyricum 5521] gi|237666723|ref|ZP_04526708.1| 23S rRNA-methyltransferase [Clostridium butyricum E4 str. BoNT E BL5262] gi|182376386|gb|EDT73968.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium butyricum 5521] gi|237657922|gb|EEP55477.1| 23S rRNA-methyltransferase [Clostridium butyricum E4 str. BoNT E BL5262] Length = 451 Score = 241 bits (616), Expect = 1e-61, Method: Composition-based stats. Identities = 77/395 (19%), Positives = 143/395 (36%), Gaps = 53/395 (13%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWHDGDD 57 + YE+QL + ++ + VP + YR + EF + Sbjct: 79 GCSSQSLPYEKQLEFLSEEVKALFDEAGVPTGEYLGIQGSPTQFEYRNKMEFTFGDEAKG 138 Query: 58 L---YHIMFDQQTKERMRIDYFMPGSLLINAL-----------MIEMMATIRLEPLLRAK 103 + ++ + +D M + + ++ E LR Sbjct: 139 APLGVGMHMIGKSFGIVTVDQCMLIDEDYRKVIRLTVDYFREQNLPYYRIMKAEGYLRHL 198 Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAI---------RLRDALHARKYQIQLIGR 154 + + T + +V L+ +D + RL +H Sbjct: 199 VIRKAKNTG---ELLVNLVTTTQIDFDLSDYVKLLRNESYDGRLVSIIHTENDSKSDAVI 255 Query: 155 ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL 214 K + +DY+ E L L + SF Q N + V + ++ Sbjct: 256 PEKVNVLYGKDYIREELL----GLEFNISPFSFFQTNTKGAEQLYSMVRDFMGDSENKVV 311 Query: 215 -ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273 +LYCG G ++A +V+ +E+ + +VEAA+ N N + N + + E + + Sbjct: 312 FDLYCGTGTIGQIVAPKAKKVIGIELIEEAVEAAKENAKLNGLENCEFLAGDVAEIIKNV 371 Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRD 331 + + I +DPPRSG+ + V + P I+Y+SCNP +L D Sbjct: 372 K---------------DKPDIIILDPPRSGVHPKALDYVIKFNAPEIIYVSCNPKTLVTD 416 Query: 332 LSILS-TTHTIERLALFDQFPYTRHMECGVLLVRK 365 L +L+ + + + + D FP T H E V L++K Sbjct: 417 LEVLTQKGYKVVQTKVKDMFPNTPHAETVVKLIKK 451 >gi|224543151|ref|ZP_03683690.1| hypothetical protein CATMIT_02351 [Catenibacterium mitsuokai DSM 15897] gi|224523938|gb|EEF93043.1| hypothetical protein CATMIT_02351 [Catenibacterium mitsuokai DSM 15897] Length = 479 Score = 241 bits (616), Expect = 1e-61, Method: Composition-based stats. Identities = 68/388 (17%), Positives = 153/388 (39%), Gaps = 38/388 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI-FRSEPIHYRMRAEFHIWHDGDDLYH 60 S + Y + L K + +++ +V + +P +YR + + Sbjct: 11 SCQFINQGYVKSLEYKNEECKKIFKDLKVNVHPVSGMEDPYYYRNKTIIAF---DKTYNY 67 Query: 61 IMFDQQTKERMRIDYFMPGSLLINALMIEM-------MATIRLEPLLRAKLFQIDYLTS- 112 ++++ + + + +A++ ++ +I R ++ I + Sbjct: 68 GLYEENSHRIIPYKSCLIHDQETDAIISKIAILFRKYRVSIYDPQRRRGEIRHILIRRAV 127 Query: 113 QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGR-------ANKTKICLDRD 165 +++Q +V ++ + + + +L A + K + + + K+ + Sbjct: 128 KTNQTLVVIVSNEAIFKGSKNFCNQLVKAFPSIKSIVLNTNKRQTSIVLGEQEKVLFGKG 187 Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSL 225 ++ + L + ++ SF Q N + L+ +++ YCG G L Sbjct: 188 FIVDELC----GMTFKISPRSFYQINHDQCEALYSKALSLITVKDPKIMDTYCGIGTIGL 243 Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285 + +++ +V+ VE+ K +V+ A+ N N V N+K ++ + EF + + Sbjct: 244 IASKNAKQVIGVELNKDAVKDAKLNKTFNKVENIKFIQGDATEF------------MVEA 291 Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST-THTIE 342 I +DPPRSG + + I+Y+SC+P + RDL + + + Sbjct: 292 AKQKVDVDVIIMDPPRSGSTETFIKAAVSLKPKEIVYVSCDPHTQVRDLKLFRKLGYDFK 351 Query: 343 RLALFDQFPYTRHMECGVLLVRKPSGWH 370 + +D FP+T H+E VLL K H Sbjct: 352 DVYPYDMFPFTSHVETVVLLSHKKPDSH 379 >gi|58336957|ref|YP_193542.1| RNA methyltransferase [Lactobacillus acidophilus NCFM] gi|227903514|ref|ZP_04021319.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus acidophilus ATCC 4796] gi|58254274|gb|AAV42511.1| RNA methyltransferase family [Lactobacillus acidophilus NCFM] gi|227868401|gb|EEJ75822.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus acidophilus ATCC 4796] Length = 460 Score = 241 bits (616), Expect = 1e-61, Method: Composition-based stats. Identities = 73/386 (18%), Positives = 144/386 (37%), Gaps = 40/386 (10%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNL-------QIFRSEPIHYRMRAEFHIWHDGDD 57 L Y++QL K + + + + + I P HYR +A++ I + Sbjct: 91 LAHLSYDKQLEFKRNNVLESLKKYHPRGYAKYKVKKTIPAPNPWHYRNKAQYQIENLHGK 150 Query: 58 LYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLFQ 106 +F + + + S LI+ L + + R P ++ + + Sbjct: 151 TKLGLFAPNSHRLIDLPKMPTQSEDTQKVEREIKVLIDKLHVPIANYRRHLPGIKTVVVR 210 Query: 107 IDYLTSQSDQAIVTLIYH-RLLDDAWRECAI--RLRDALHARKYQIQLIGRANKTKICLD 163 T + ++T+ + + L +E + NKT+ L Sbjct: 211 QSEATKEIQVTLITIDHKIKNLMPLAKEIMKLDHVVSVYQNETEWQNPQVWGNKTEKLLG 270 Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGN 222 ++ + E + L +F Q N V++ L L++ Y G G Sbjct: 271 KNQITEEILDKKFAL----SPRAFFQLNPVQTVNLYSEALKYLDLSPDQTLIDAYSGVGT 326 Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282 ++ A +V+ +E +V+ A +N+ NH+ N ++ S+++ L Sbjct: 327 LGILAADRVKQVIGIETIPEAVKDAEHNVKLNHIKNANYIQGSTEKI------------L 374 Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLSILSTTHT 340 ++ + + VDPPR+GL + + + +YISCNP +L +DL +LS + Sbjct: 375 PELQNNGVPIDALIVDPPRTGLAKSLIKTILRVKPQTFVYISCNPSTLAQDLVLLSEAYD 434 Query: 341 IERLALFDQFPYTRHMECGVLLVRKP 366 + + D P T E LV + Sbjct: 435 VRVIQNVDMLPQTPRCEAIAKLVLRK 460 >gi|269792573|ref|YP_003317477.1| RNA methyltransferase, TrmA family [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100208|gb|ACZ19195.1| RNA methyltransferase, TrmA family [Thermanaerovibrio acidaminovorans DSM 6589] Length = 457 Score = 241 bits (616), Expect = 1e-61, Method: Composition-based stats. Identities = 87/392 (22%), Positives = 147/392 (37%), Gaps = 46/392 (11%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMML---AFQVPNLQIFRSEP--IHYRMRAEFHIWHDGD 56 L Y QL+ K ++ M F+ P ++ P YR +A + G Sbjct: 80 GCQLQHADYPLQLSMKRRVVQDAMRRIGGFEDPPVEPCEMSPLQWGYRNKAIVPVRSQGR 139 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATI----------------RLEPLL 100 + + E + + S IN +M + + R L Sbjct: 140 GWGMGFYRPFSHEVVPLRSCPVMSDEINRVMGLIRDFLEPRIRGGLLSPYREGDRPSGSL 199 Query: 101 RAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKI 160 R + + T + ++V R + E RL + L + Sbjct: 200 REVVVRHGMRTGELLVSLVMRQDPRGRLLSDLEGLFRLLEGLGVVGLSV--FRNRRDANF 257 Query: 161 CLDRDY----VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG-DLLE 215 D D+ +R+ + SF Q N M + V+ D+LE Sbjct: 258 VWDGDFAWGIGRDRMWEVLGGMRLSYDVTSFFQVNTHQAERMFQHVVDLLDETGARDVLE 317 Query: 216 LYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275 LY G G+ + ++A RV+AVE +VE R N+ N ++ V + ++++ + Sbjct: 318 LYSGVGSLTGMIAAGGRRVVAVEEWPSAVEGLRENLQVNGIHGVTPLLGAAEDVLGDL-- 375 Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLS 333 F+ + +DPPR G + + A PH++Y+SCNP +L RDL Sbjct: 376 -------------GGDFQAVVLDPPRGGCHPEVIRAMVDAAVPHVIYVSCNPATLARDLM 422 Query: 334 ILS-TTHTIERLALFDQFPYTRHMECGVLLVR 364 +LS + + R+ FD FP T H+EC L+ R Sbjct: 423 LLSQGGYVLRRVRPFDMFPQTCHVECVTLMSR 454 >gi|253580204|ref|ZP_04857471.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251848723|gb|EES76686.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 454 Score = 241 bits (615), Expect = 1e-61, Method: Composition-based stats. Identities = 88/392 (22%), Positives = 156/392 (39%), Gaps = 49/392 (12%) Query: 2 SGTLL-IDQYEQQLAEKVDRLRQMM----LAFQVPNLQIFRSE-PIHYRMRAEFHI---W 52 G + YE QL K ++R+++ I S YR + EF + Sbjct: 79 GGCMYQTMSYENQLKMKECQVRELLDGALNGTDYQWEGIHGSPIEFRYRNKMEFSFGDAY 138 Query: 53 HDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMA-----------TIRLEPLLR 101 DG + T + + D + ++ + ++ LR Sbjct: 139 KDGPLTLGLHKKGSTYDVLTADDCQLVHEDMTKILTCVHEYFLKRNVSYYKKMQHTGYLR 198 Query: 102 AKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRL------RDALHARKYQIQLIGRA 155 L + T + ++T ++ +E + L +H + + ++ Sbjct: 199 HLLLRRGVTTGEILVHVITTSQEEHDLESLKEELLALPLEGKIVGIMHIINDSLSDVVQS 258 Query: 156 NKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL- 214 ++T+I +D+ E L L ++ SF QPN+ + V + ++ Sbjct: 259 DETRILYGQDFFYETLL----GLRFKISTFSFFQPNSLAAEVLYSIVREYIGDTKDKVVF 314 Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274 +LY G G + + A D V+ VEI + +VEAA+ N A N+++N K + Sbjct: 315 DLYSGTGTIAQLAASVADEVIGVEIVEEAVEAAKQNAALNNLSNCKFIVGDV-------- 366 Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDL 332 LK +D + + I +DPPR G+ + + +Y HI+YISC SL RDL Sbjct: 367 -------LKVLDDLTEKPDVIILDPPRDGIHPKALPKILSYGVDHIVYISCKATSLARDL 419 Query: 333 -SILSTTHTIERLALFDQFPYTRHMECGVLLV 363 + L+ + +E+ DQF T H+E VLL Sbjct: 420 PAFLAAGYKLEKACCVDQFCQTVHVETVVLLS 451 >gi|218782690|ref|YP_002434008.1| RNA methyltransferase, TrmA family [Desulfatibacillum alkenivorans AK-01] gi|218764074|gb|ACL06540.1| RNA methyltransferase, TrmA family [Desulfatibacillum alkenivorans AK-01] Length = 463 Score = 241 bits (615), Expect = 1e-61, Method: Composition-based stats. Identities = 84/395 (21%), Positives = 158/395 (40%), Gaps = 57/395 (14%) Query: 9 QYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIW----------- 52 Y++QL K +++ + + + + YR + EF Sbjct: 88 DYKKQLEYKGEQVAESLHHIGGLENVPVHPTMGSELIYGYRNKMEFSCSDHRWLLPDEIA 147 Query: 53 ----HDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----LRAKL 104 D + + M I+ + + N ++ + A ++ PL L++ Sbjct: 148 LEEEVDRSFALGLHVPGTFHKVMDIEKCLLQTDDANDILQAVHAYMKDSPLPAYGLKSHE 207 Query: 105 ----FQIDYLTSQSDQAIVTLIYH-------RLLDDAWRECAIRLRDALHARKYQIQLIG 153 F + + D+ ++ ++ + L DA E ++ ++ + + Sbjct: 208 GFWRFAVIRHSVARDEYLINIVTSWEELPTVQPLADALVEKFPKITAIVNNITDRKSGVA 267 Query: 154 RANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD- 212 +K +DY+ + + Y+ NSF Q N ++ + + G+ Sbjct: 268 VGDKEICLKGQDYIMDSIGPWE----YKVSANSFFQTNTRQAKNLYQTMEDYADLKGGER 323 Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 +L+LY G G + L+ VL +EI + +V AR N N VNN + Sbjct: 324 VLDLYSGAGAIPIWLSPKAGEVLGIEIVEVAVADARDNCERNKVNNCTFLVGD------- 376 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG--MVQAYPHILYISCNPDSLCR 330 L+ +D +++ + +DPPRSG+ V M A ++YISCNP +L R Sbjct: 377 --------ILETLDEVAHKPDVLVIDPPRSGMHGKVVKKVMAMAPSKMVYISCNPTTLAR 428 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 DL +LS T+++E + D FP+T H+E LV+K Sbjct: 429 DLELLSETYSVEEVQPIDMFPHTHHIEAVARLVKK 463 >gi|295109231|emb|CBL23184.1| 23S rRNA m(5)U-1939 methyltransferase [Ruminococcus obeum A2-162] Length = 462 Score = 241 bits (615), Expect = 1e-61, Method: Composition-based stats. Identities = 86/403 (21%), Positives = 158/403 (39%), Gaps = 58/403 (14%) Query: 2 SGTLL-IDQYEQQLAEKVDRLRQMMLAF----------QVPNLQ---IFRSE-PIHYRMR 46 G + YE QLA K ++R+++ + + + I S YR + Sbjct: 79 GGCMYQTMSYENQLAMKETQIRELLEDALVQGGQVDENGLADFEWEGIHGSPIEFGYRNK 138 Query: 47 AEFHI---WHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMA----------- 92 EF + DG + T + + D + ++I + Sbjct: 139 MEFSFGDEYKDGPLSLGLHKKGSTYDILNTDDCKLVHKDMTDILICVREFFREKGASYYR 198 Query: 93 TIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRL------RDALHARK 146 ++ LR + + + + +VT + +E + L +H Sbjct: 199 KLQHTGYLRHLMLRRGVTSGEILVHLVTTTQEEYDLEPLKEQLLALPLEGKIVGIMHILN 258 Query: 147 YQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAAT 206 + + ++++T+I +DY E L L +R SF QPN+ + V Sbjct: 259 DSLSDVVQSDETRILYGQDYFYETLL----GLKFRISTFSFFQPNSLAAEVLYNIVREYI 314 Query: 207 KGIQG-DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265 + G ++ +LY G G + +LA V+ +EI + +V+AAR N N ++N + + Sbjct: 315 QNTSGMEVFDLYSGTGTIAQLLAPVAKEVIGIEIIEDAVKAARENAKLNGLDNCRFIAGD 374 Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISC 323 LK +D + + I +DPPR G+ + + +Y I+Y+SC Sbjct: 375 V---------------LKVLDDLTEKPDVIVLDPPRDGIHPKALPKILSYGVNRIVYVSC 419 Query: 324 NPDSLCRDL-SILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 SL RDL + L+ + +E+ DQF T E LLV++ Sbjct: 420 KATSLARDLEAFLAAGYRLEKACCVDQFCETVWTEAVALLVKE 462 >gi|254226236|ref|ZP_04919829.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio cholerae V51] gi|125621209|gb|EAZ49550.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio cholerae V51] Length = 440 Score = 241 bits (615), Expect = 1e-61, Method: Composition-based stats. Identities = 88/373 (23%), Positives = 154/373 (41%), Gaps = 32/373 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFR---SEPIHYRMRAEFHIWHDGD-- 56 L Q+ K L Q+M+ F +L + S+ YR RA + D Sbjct: 90 GCDLQHLDRAGQVHHKQQALSQLMVKFAGQSLALSAPVCSDDQGYRRRARLSLMWDKKTQ 149 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116 L +Q+K + + + +NAL+ ++ A + E +L ++ + + + Sbjct: 150 QLQLGFRRKQSKAIVNVTHCPVLEPSLNALLPDLNALLS-EWSQPERLGHVELVKGDNTR 208 Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR-DYVDERLTVAG 175 +V R L + RL D + + L+ A + + Y +E Sbjct: 209 VLVL----RHLGALIEQDQQRLTDFASQNQLTLYLMLEAGELQHVQGEAPYCEET----- 259 Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRV 234 + + F Q N +N HM+ L Q +L+L+CG GNF+L LA+ V Sbjct: 260 -GSRLSFLPSHFIQVNRAVNQHMVAQALNWLEVSPQERVLDLFCGLGNFTLPLAKQAQAV 318 Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294 + VE V+ A +N N +NNV + + ++ + +F Sbjct: 319 VGVEGVDEMVQHATHNAKLNQINNVAFYQANLEQ------------DMTSASWAQQKFAK 366 Query: 295 IFVDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPY 352 + +DP R+G + + ++Y+SCNP +L RD S+LS +E+L + D FP+ Sbjct: 367 VLLDPARAGAEGIVDQLSALGAKRVVYVSCNPATLARDSQSLLSQGFRLEKLGMLDMFPH 426 Query: 353 TRHMECGVLLVRK 365 T H+E L V+K Sbjct: 427 TSHLESMALFVKK 439 >gi|121728979|ref|ZP_01681983.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio cholerae V52] gi|147674864|ref|YP_001217954.1| 23S rRNA 5-methyluridine methyltransferase [Vibrio cholerae O395] gi|262167283|ref|ZP_06034993.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Vibrio cholerae RC27] gi|226725397|sp|A5F5I8|RUMA_VIBC3 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|121628745|gb|EAX61212.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio cholerae V52] gi|146316747|gb|ABQ21286.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio cholerae O395] gi|227014344|gb|ACP10554.1| putative RNA methyltransferase,TrmA family [Vibrio cholerae O395] gi|262024258|gb|EEY42949.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Vibrio cholerae RC27] Length = 440 Score = 241 bits (615), Expect = 1e-61, Method: Composition-based stats. Identities = 88/373 (23%), Positives = 153/373 (41%), Gaps = 32/373 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFR---SEPIHYRMRAEFHIWHDGD-- 56 L Q+ K L Q+M+ F +L + S+ YR RA + D Sbjct: 90 GCDLQHLDRAGQIHHKQQALSQLMVKFAGQSLALSAPVCSDDQGYRRRARLSLMWDKKTQ 149 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116 L +Q+K + + +NAL+ ++ A + E +L ++ + + + Sbjct: 150 QLQLGFRRKQSKAIVNVTDCPVLEPSLNALLPDLNALLS-EWSQPERLGHVELVKGDNTR 208 Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR-DYVDERLTVAG 175 +V R L + RL D + + L+ A + + Y +E Sbjct: 209 VLVL----RHLGALIEQDQQRLTDFASQNQLTLYLMLEAGELQHVQGEAPYCEET----- 259 Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRV 234 + + F Q N +N HM+ L Q +L+L+CG GNF+L LA+ V Sbjct: 260 -GSRLSFLPSHFIQVNRAVNQHMVAQALNWLEVSPQEHVLDLFCGLGNFTLPLAKQAQAV 318 Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294 + VE V+ A +N N +NNV + + ++ + +F Sbjct: 319 VGVEGVDEMVQHATHNAKLNQINNVAFYQANLEQ------------DMTSASWAQQKFAK 366 Query: 295 IFVDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPY 352 + +DP R+G + + ++Y+SCNP +L RD S+LS +E+L + D FP+ Sbjct: 367 VLLDPARAGAEGIVDQLSALGAKRVVYVSCNPATLARDSQSLLSQGFRLEKLGMLDMFPH 426 Query: 353 TRHMECGVLLVRK 365 T H+E L V+K Sbjct: 427 TSHLESMALFVKK 439 >gi|91212152|ref|YP_542138.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia coli UTI89] gi|117625013|ref|YP_854001.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia coli APEC O1] gi|218559773|ref|YP_002392686.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia coli S88] gi|237706587|ref|ZP_04537068.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia sp. 3_2_53FAA] gi|122422654|sp|Q1R7Q7|RUMA_ECOUT RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|143580911|sp|A1AEX2|RUMA_ECOK1 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|91073726|gb|ABE08607.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli UTI89] gi|115514137|gb|ABJ02212.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli APEC O1] gi|218366542|emb|CAR04295.1| 23S rRNA (uracil-5)-methyltransferase [Escherichia coli S88] gi|226899627|gb|EEH85886.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia sp. 3_2_53FAA] gi|294492471|gb|ADE91227.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli IHE3034] gi|307625646|gb|ADN69950.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia coli UM146] gi|315289302|gb|EFU48697.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS 110-3] gi|323950998|gb|EGB46874.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli H252] gi|323957203|gb|EGB52927.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli H263] Length = 433 Score = 241 bits (615), Expect = 1e-61, Method: Composition-based stats. Identities = 85/368 (23%), Positives = 142/368 (38%), Gaps = 30/368 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWH--DGDDLY 59 + Q K L ++M + ++ P YR RA + + L Sbjct: 89 GCQQQHASVDLQQRSKSAALARLM---KHEVSEVIADVPWGYRRRARLSLNYLPKTQQLQ 145 Query: 60 HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119 + + + + + AL+ ++ A + +R L ++ + + S ++ Sbjct: 146 MGFRKAGSSDIVDVKQCPILVPQLEALLPKVRACLGSLQAMRH-LGHVELVQATSGTLMI 204 Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179 L + L A RE +L H+ + L + + E L Sbjct: 205 -LRHTAPLSSADRE---KLECFSHSEGLDLYLAPDSEILETVSG-----EMPWYDSNGLR 255 Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVE 238 F Q NAG+N M+ L D +L+L+CG GNF+L LA V+ VE Sbjct: 256 LTFSPRDFIQVNAGVNQKMVARALEWLDVEPEDCVLDLFCGMGNFTLPLATQAASVVGVE 315 Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298 VE + N N + NV + +E + F + +D Sbjct: 316 GVPALVEKGQQNARLNGLQNVTFYHENLEE------------DVTKQPWAKNGFDKVLLD 363 Query: 299 PPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHM 356 P R+G +++ P I+Y+SCNP +L RD ++L +TI RLA+ D FP+T H+ Sbjct: 364 PARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHL 423 Query: 357 ECGVLLVR 364 E VL R Sbjct: 424 ESMVLFSR 431 >gi|317495594|ref|ZP_07953962.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Gemella moribillum M424] gi|316914408|gb|EFV35886.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Gemella moribillum M424] Length = 544 Score = 241 bits (615), Expect = 1e-61, Method: Composition-based stats. Identities = 75/388 (19%), Positives = 152/388 (39%), Gaps = 38/388 (9%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQV---PNLQIFR--SEP--IHYRMRAEFHIWHDGDD 57 L YE+QL K + L + P+ + + + P HYR + +F + Sbjct: 86 LAHVSYEKQLEYKRNILLDAFDKYYKLPKPDKLVLKTLASPIIEHYRNKNQFPLAVRNGR 145 Query: 58 LYHIMFDQQTKERMRIDYFMPGSL---LINALMIEMMATIRLEPLLRAKLFQIDYLTSQS 114 + ++ + + + + I+ + I L + + ++E K + + Y+++++ Sbjct: 146 VIAGLYKEGSNDLVEINEDVALHENGNKITNLAKKCLGKYKVEISTNKKTYGVKYISTRT 205 Query: 115 ----DQAIVTLIYH----RLLDDAWRECAIR--LRDALHARKYQIQLIGRANKTKICLDR 164 +T + + + LD E ++ + + ++ Sbjct: 206 SFYNGDVQLTFVANTDKIKNLDKVVNEIKREAIVKSIVLNVTNDNDHLVMGSENITLYGS 265 Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNF 223 DY+ E++ Y SF Q N G + + V+ + + +L+ +CG G Sbjct: 266 DYIVEKIG----DTKYELSAKSFFQLNPGATKKLYDKVVEFADLRETNIVLDAFCGVGTI 321 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 ++R V V+I + +++ A N+ N++ N V + + ++ Sbjct: 322 GQYVSRKCHEVYGVDIVEDAIKDANNNVKLNNLTNCIYVAGDANKIVPRWKK-------- 373 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSILSTTHTIE 342 F VDPPR+GL ++ I+Y+SCNP +L RDL +L+ + I Sbjct: 374 ----KGINFDVAIVDPPRTGLGHLAKNLLDVDAKKIVYVSCNPSTLARDLKVLTRKYKIR 429 Query: 343 RLALFDQFPYTRHMECGVLLVRKPSGWH 370 R+ D FP T +E LL + H Sbjct: 430 RIQPIDMFPGTAAVETVALLSKLDVDKH 457 >gi|301027558|ref|ZP_07190891.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS 69-1] gi|300394901|gb|EFJ78439.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS 69-1] Length = 433 Score = 241 bits (615), Expect = 1e-61, Method: Composition-based stats. Identities = 84/368 (22%), Positives = 142/368 (38%), Gaps = 30/368 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWH--DGDDLY 59 + Q K L ++M + ++ P YR RA + + L Sbjct: 89 GCQQQHASVDLQQRSKSAALARLM---KHEVSEVIADVPWGYRRRARLSLNYLPKTQQLQ 145 Query: 60 HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119 + + + + + AL+ ++ A + +R L ++ + + S ++ Sbjct: 146 MGFRKAGSSDIVDVKQCPILVPQLEALLPKVRACLDSLQAMRH-LGHVELVQATSGTLMI 204 Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179 L + L A RE R H+ + L + + E L Sbjct: 205 -LRHTAPLSSADREKLERFS---HSEGLDLYLAPDSEILETVAG-----EMPWYDSNRLR 255 Query: 180 YRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVE 238 F Q NAG+N M+ L + +L+L+CG GNF+L LA V+ VE Sbjct: 256 LTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVE 315 Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298 VE + N N ++NV + +E + F + +D Sbjct: 316 GVPALVEKGQQNARLNGLHNVTFYHENLEE------------DVTKQPWAKNGFDKVLLD 363 Query: 299 PPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHM 356 P R+G +++ P I+Y+SCNP +L RD ++L +TI RLA+ D FP+T H+ Sbjct: 364 PARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHL 423 Query: 357 ECGVLLVR 364 E VL R Sbjct: 424 ESMVLFSR 431 >gi|229527058|ref|ZP_04416453.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Vibrio cholerae 12129(1)] gi|229335455|gb|EEO00937.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Vibrio cholerae 12129(1)] Length = 440 Score = 241 bits (615), Expect = 1e-61, Method: Composition-based stats. Identities = 88/373 (23%), Positives = 153/373 (41%), Gaps = 32/373 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFR---SEPIHYRMRAEFHIWHDGD-- 56 L Q+ K L Q+M+ F +L + S+ YR RA + D Sbjct: 90 GCDLQHLDRAGQIHHKQQALSQLMVKFAGQSLALSAPVCSDDQGYRRRARLSLMWDKKTQ 149 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116 L +Q+K + + +NAL+ ++ A + E +L ++ + + + Sbjct: 150 QLQLGFRRKQSKAIVNVTDCPVLEPSLNALLPDLNALLS-EWSQPERLGHVELVKGDNTR 208 Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR-DYVDERLTVAG 175 +V R L + RL D + + L+ A + + Y +E Sbjct: 209 VLVL----RHLGALIEQDQQRLTDFASQNQLTLYLMLEAGELQHVQGEAPYCEET----- 259 Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRV 234 + + F Q N +N HM+ L Q +L+L+CG GNF+L LA+ V Sbjct: 260 -GSRLSFLPSHFIQVNRAVNQHMVAQALNWLEVSPQERVLDLFCGLGNFTLPLAKQAQAV 318 Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294 + VE V+ A +N N +NNV + + ++ + +F Sbjct: 319 VGVEGVDEMVQHATHNAKLNQINNVAFYQANLEQ------------DMTSSSWAQQKFAK 366 Query: 295 IFVDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPY 352 + +DP R+G + + ++Y+SCNP +L RD S+LS +E+L + D FP+ Sbjct: 367 VLLDPARAGAEGIVDQLSALGAKRVVYVSCNPATLARDSQSLLSQGFRLEKLGMLDMFPH 426 Query: 353 TRHMECGVLLVRK 365 T H+E L V+K Sbjct: 427 TSHLESMALFVKK 439 >gi|110806549|ref|YP_690069.1| 23S rRNA 5-methyluridine methyltransferase [Shigella flexneri 5 str. 8401] gi|122957267|sp|Q0T1Q1|RUMA_SHIF8 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|110616097|gb|ABF04764.1| putative enzyme [Shigella flexneri 5 str. 8401] Length = 433 Score = 241 bits (615), Expect = 1e-61, Method: Composition-based stats. Identities = 84/368 (22%), Positives = 142/368 (38%), Gaps = 30/368 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWH--DGDDLY 59 + Q K L ++M + ++ P YR RA + + L Sbjct: 89 GCQQQHASVDLQQRSKSAALARLM---KHDVSEVIADVPWGYRRRARLSLNYLPKTQQLQ 145 Query: 60 HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119 + + + + + + AL+ ++ A + +R L ++ + + S ++ Sbjct: 146 MGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMRH-LGHVELVQATSGTLMI 204 Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179 L + L A RE R H+ + L + + E L Sbjct: 205 -LRHTASLSSADREKLERFS---HSEGLDLYLAPDSEILETVSG-----EMPWYDSNGLR 255 Query: 180 YRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVE 238 F Q NAG+N M+ L + +L+L+CG GNF+L LA V+ VE Sbjct: 256 LTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVE 315 Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298 VE + N N + NV + +E + F + +D Sbjct: 316 GVPALVEKGQQNARLNGLQNVTFYHENLEE------------DVTKQPWAKNGFDKVLLD 363 Query: 299 PPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHM 356 P R+G +++ P I+Y+SCNP +L RD ++L +TI RLA+ D FP+T H+ Sbjct: 364 PARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHL 423 Query: 357 ECGVLLVR 364 E VL R Sbjct: 424 ESMVLFSR 431 >gi|229524438|ref|ZP_04413843.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Vibrio cholerae bv. albensis VL426] gi|229338019|gb|EEO03036.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Vibrio cholerae bv. albensis VL426] Length = 440 Score = 241 bits (615), Expect = 1e-61, Method: Composition-based stats. Identities = 87/373 (23%), Positives = 153/373 (41%), Gaps = 32/373 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFR---SEPIHYRMRAEFHIWHDGD-- 56 L Q+ K L Q+M+ F +L + S+ YR RA + D Sbjct: 90 GCDLQHLDRAGQIHHKQQALSQLMVKFAGQSLALSAPVCSDDQGYRRRARLSLMWDKKTQ 149 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116 L +Q+K + + +NAL+ ++ A + E +L ++ + + + Sbjct: 150 QLQLGFRRKQSKAIVNVTDCPVLEPSLNALLPDLNALLS-EWSQPERLGHVELVKGDNTR 208 Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR-DYVDERLTVAG 175 +V R L + RL D + + L+ A + + Y +E Sbjct: 209 VLVL----RHLGALIEQDQQRLTDFASQNQLTLYLMPEAGELQHVQGEAPYCEET----- 259 Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRV 234 + + F Q N +N HM+ L Q +L+L+CG GNF+L LA+ V Sbjct: 260 -GSRLSFLPSHFIQVNRAVNQHMVAQALNWLEVSPQERVLDLFCGLGNFTLPLAKQAQAV 318 Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294 + VE V+ A +N N +NNV + + ++ + +F Sbjct: 319 VGVEGVDEMVQHATHNAKLNQINNVAFYQANLEQ------------DMTSASWAQQKFAK 366 Query: 295 IFVDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPY 352 + +DP R+G + + ++Y+SCNP +L RD S+LS +++L + D FP+ Sbjct: 367 VLLDPARAGAEGIVDQLSALGAKRVVYVSCNPATLARDSQSLLSQGFRLDKLGMLDMFPH 426 Query: 353 TRHMECGVLLVRK 365 T H+E L V+K Sbjct: 427 TSHLESMALFVKK 439 >gi|153803087|ref|ZP_01957673.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio cholerae MZO-3] gi|124121369|gb|EAY40112.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio cholerae MZO-3] Length = 440 Score = 241 bits (615), Expect = 1e-61, Method: Composition-based stats. Identities = 87/373 (23%), Positives = 154/373 (41%), Gaps = 32/373 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFR---SEPIHYRMRAEFHIWHDGD-- 56 L Q+ K L Q+M+ F +L + S+ YR RA + D Sbjct: 90 GCDLQHLDRAGQIHHKQQALSQLMVKFAGQSLALSAPVCSDDQGYRRRARLSLMWDKKTQ 149 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116 L +Q+K + + + +NAL+ ++ A + E +L ++ + + + Sbjct: 150 QLQLGFRRKQSKAIVNVTHCPVLEPSLNALLPDLNALLS-EWSQPERLGHVELVKGDNTR 208 Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR-DYVDERLTVAG 175 +V R L + RL D + + L+ A + + Y +E Sbjct: 209 VLVL----RHLGALIEQDQQRLTDFASQNQLTLYLMPEAGELQHVQGEAPYCEET----- 259 Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRV 234 + + F Q N +N HM+ L Q +L+L+CG GNF+L LA+ V Sbjct: 260 -GSRLNFLPSHFIQVNRAVNQHMVAQALNWLEVSPQERVLDLFCGLGNFTLPLAKQAQAV 318 Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294 + VE V+ A +N N +NNV + + ++ + +F Sbjct: 319 VGVEGVDEMVQHATHNAKLNQINNVAFYQANLEQ------------DMTSASWAQQKFAK 366 Query: 295 IFVDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPY 352 + +DP R+G + + ++Y+SCNP +L RD S+LS +++L + D FP+ Sbjct: 367 VLLDPARAGAEGIVDQLSALGAKRVVYVSCNPATLARDSQSLLSQGFRLDKLGMLDMFPH 426 Query: 353 TRHMECGVLLVRK 365 T H+E L V+K Sbjct: 427 TSHLESMALFVKK 439 >gi|260592299|ref|ZP_05857757.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella veroralis F0319] gi|260535749|gb|EEX18366.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella veroralis F0319] Length = 474 Score = 241 bits (615), Expect = 2e-61, Method: Composition-based stats. Identities = 77/403 (19%), Positives = 145/403 (35%), Gaps = 65/403 (16%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPNLQIFRS-----EPIHYRMRAEFHIWHD--------- 54 Y +QL K ++ + L FR YR + EF + Sbjct: 91 PYSEQLKAKQQQVYDQLSRIGKVELPEFRPIMGSVHTKEYRNKLEFGCANKRWYTAEELA 150 Query: 55 ----------GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLL---- 100 G +HI + I+ L N + ++ + Sbjct: 151 ALPEGVGLSGGAIGFHITGSFD--KIYPIEKCWLMDNLCNEIRNDIRDYALETGMTFYDI 208 Query: 101 ---RAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANK 157 L + S + + ++ + +H ++ E A L + + QI + + Sbjct: 209 RAQHGLLRDLMLRNSNTGEWMLLVQFHYD-EEGDDERAKALMQHIAEKFPQITSLFYVDN 267 Query: 158 TK-----------ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAAT 206 K + D++ E + L ++ SF Q N H+ V Sbjct: 268 QKGNDTFNDLELTLYKGNDHIFETM----EDLKFKVSPKSFYQTNTEQAYHLYS-VAREF 322 Query: 207 KGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRM 264 + GD + +LY G G + +A+ +V+ +E ++E A+ N N+++N Sbjct: 323 ANLTGDELVYDLYTGTGTIANFIAKKARKVIGIEYVPEAIEDAKVNSNVNNIDNTLFYAG 382 Query: 265 SSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYIS 322 K+ ++ R I DPPR+G+ V ++ + I+Y+S Sbjct: 383 DMKDILT-----------EEFIQKHGRPDVIITDPPRAGMHPDVVNVILGASPKRIVYVS 431 Query: 323 CNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 CNP + RDL++L + + + D FP+T H+E VLL ++ Sbjct: 432 CNPATQARDLALLDADYKVAAVQPVDMFPHTPHVENVVLLEKR 474 >gi|163755043|ref|ZP_02162164.1| hypothetical protein KAOT1_03477 [Kordia algicida OT-1] gi|161325110|gb|EDP96438.1| hypothetical protein KAOT1_03477 [Kordia algicida OT-1] Length = 470 Score = 241 bits (615), Expect = 2e-61, Method: Composition-based stats. Identities = 83/396 (20%), Positives = 141/396 (35%), Gaps = 56/396 (14%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFHI----WHD------ 54 YE QL K + + + SE YR + EF W Sbjct: 92 YEHQLFYKQKEVLNNLTRIGKVALPELTPILGSSEQYFYRNKMEFSFSDSRWLTQEEVDS 151 Query: 55 ----GDDLYHIMFDQQTKERM-RIDYFMPGSLLINAL-----------MIEMMATIRLEP 98 GD +++ I+ + NA+ I T Sbjct: 152 DEDLGDRNALGFHIPGMWDKILDINKCHLQADPSNAIRNTIKEFATENNIAFFNTRHQTG 211 Query: 99 LLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKT 158 LLR + + TS + +V LI D RE + + + Sbjct: 212 LLRTLMIR----TSSIGEVMV-LIQFYKEDKEKRELLLNFVQEKFPEITSLLYVINGKGN 266 Query: 159 KICLDRDYV----DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-- 212 D++ + + + L ++ SF Q N+ L + G+QGD Sbjct: 267 DTIYDQEVICYAGRDHIFEEMEGLQFKINAKSFYQTNSDQAYE-LYKITRDFAGLQGDEL 325 Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + +LY G G + +++ +V+ VE ++EAA+ N A N++ N + K+ A Sbjct: 326 VYDLYTGTGTIAQFVSKKAKKVIGVESVPEAIEAAKENAAFNNITNTEFFVGDMKKVFNA 385 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCR 330 + I DPPR G+ V + A ++Y+SCN + R Sbjct: 386 -----------EFIETHGTPDVIITDPPRDGMHADVVQQILNIAPKKVVYVSCNSATQAR 434 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRKP 366 DL+++ T+ + ++ D FP T H+E VLL R+ Sbjct: 435 DLALMDATYKVTKVQAVDMFPQTHHIENVVLLERRN 470 >gi|331664345|ref|ZP_08365251.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli TA143] gi|284922722|emb|CBG35810.1| 23s rRNA (uracil-5-)-methyltransferase [Escherichia coli 042] gi|331058276|gb|EGI30257.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli TA143] Length = 433 Score = 241 bits (614), Expect = 2e-61, Method: Composition-based stats. Identities = 84/368 (22%), Positives = 142/368 (38%), Gaps = 30/368 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWH--DGDDLY 59 + Q K L ++M + ++ P YR RA + + L Sbjct: 89 GCQQQHASVDLQQRSKSAALARLM---KHEVSEVIADVPWGYRRRARLSLNYLPKTQQLQ 145 Query: 60 HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119 + + + + + AL+ ++ A + +R L ++ + + S ++ Sbjct: 146 MGFRKAGSSDIVDVKQCPILVPQLEALLPKVRACLGSLQAMRH-LGHVELVQATSGTLMI 204 Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179 L + L A RE R H+ + L + + E L Sbjct: 205 -LRHTAPLSSADREKLERFS---HSEGLDLYLAPDSEILETVSG-----EMPWYDSNGLR 255 Query: 180 YRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVE 238 F Q NAG+N M+ L + +L+L+CG GNF+L LA V+ VE Sbjct: 256 LTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVE 315 Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298 VE + N N ++NV + +E + F + +D Sbjct: 316 GVPALVEKGQQNARLNDLHNVTFYHENLEE------------DVTKQPWAKNGFDKVLLD 363 Query: 299 PPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHM 356 P R+G +++ P I+Y+SCNP +L RD ++L +TI RLA+ D FP+T H+ Sbjct: 364 PARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHL 423 Query: 357 ECGVLLVR 364 E VL R Sbjct: 424 ESMVLFSR 431 >gi|282898476|ref|ZP_06306466.1| 23S rRNA methyltransferase/RumA [Raphidiopsis brookii D9] gi|281196642|gb|EFA71548.1| 23S rRNA methyltransferase/RumA [Raphidiopsis brookii D9] Length = 453 Score = 241 bits (614), Expect = 2e-61, Method: Composition-based stats. Identities = 76/390 (19%), Positives = 139/390 (35%), Gaps = 47/390 (12%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDG- 55 YE QL K +++ Q + + + P+ YR +A + I Sbjct: 84 GCQWQHISYEYQLQVKQNQVIQALERIGNFVNPPVAPVLTTNSPLGYRNKATYPIKTSST 143 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-----------LRAKL 104 + + + T + ++ +N L+ E+ I+ + +R Sbjct: 144 GQVQAGYYQKGTHLLINLNQCPVQDPRLNPLLTEIKQDIQKQGWSVYDENRHQGEIRHLG 203 Query: 105 FQIDYLTSQSDQAIVTLIYHRLLDD----AWRECAIRLRDALHARKYQIQLIGRANKTKI 160 +I T + +V + W +L T Sbjct: 204 LRIGRYTGEILLTLVVKNGQLPGIEIQAQEWLHRYPQLVGICLNHNGDRTNAIFGRVTTC 263 Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYC 218 Y+ ER L ++ ++F Q +LE V+ + +QGD L++ YC Sbjct: 264 IAGVPYLRERFA----GLEFKVRPDTFFQVYTETAEALLE-VIQSQLNLQGDEILVDAYC 318 Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278 G G +L LA+ + + +EI +VE A N N + N K + ++ + Sbjct: 319 GIGTLTLPLAKQARQTIGLEIQPAAVEQAICNAQHNGIINAKFQIGAVEDILPKL----- 373 Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILS 336 + +DPPR G + + + I YISC +L RDLS+L Sbjct: 374 ----------ETVPDIVLLDPPRKGCESIVLESLLKLKPKKIAYISCKASTLARDLSLLC 423 Query: 337 TT--HTIERLALFDQFPYTRHMECGVLLVR 364 + + ++++ D FP+T H+E L R Sbjct: 424 ASSEYKLKKVQPADFFPHTPHVETVAFLER 453 >gi|86604758|ref|YP_473521.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Synechococcus sp. JA-3-3Ab] gi|86553300|gb|ABC98258.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Synechococcus sp. JA-3-3Ab] Length = 464 Score = 241 bits (614), Expect = 2e-61, Method: Composition-based stats. Identities = 74/382 (19%), Positives = 139/382 (36%), Gaps = 46/382 (12%) Query: 9 QYEQQLAEKVDRLRQMMLAFQV-----PNLQIFRSEPIHYRMRAEFHIWH-DGDDLYHIM 62 Y QQL K LR + P + +P+ YR + + I +G L Sbjct: 102 SYAQQLVTKQQILRDALERIGGLTLPEPVPILGSPQPLRYRNKVTYPIAKAEGQPLRMGY 161 Query: 63 FDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-----------LRAKLFQIDYLT 111 + + + ++ ++ + E+ ++ LR +I T Sbjct: 162 YRPGSHRLVNLNQCPVQDERLDVFLREIKRDLQEAGWSVYDESRHQGHLRHLGLRIGRRT 221 Query: 112 SQSDQAIVTLIYHRLLDDAWRECAIR----LRDALHARKYQIQLIGRANKTKICLDRDYV 167 + +V+ + W + ++ L +T++ R + Sbjct: 222 REVLLTLVSCSRDLPHLERWAKRWMQCYPDLVGVCLNLNPARTNTIFGPQTEVIAGRGSL 281 Query: 168 DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLV 226 E L L + SF Q N W++ + + +L+ YCG G +L+ Sbjct: 282 REELA----GLSFWIDSTSFFQVNTEQAEAFFTWIVDQLQLRGEEIVLDAYCGIGTLTLL 337 Query: 227 LARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDID 286 LAR R + VE+ +V ARYN N + + + + + + + Sbjct: 338 LARRAKRAIGVEVLPAAVAQARYNAQFNGIPSAQFFQGAVETVLPTLP------------ 385 Query: 287 IHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSIL--STTHTIE 342 + +DPPR G + + +++ ++YISC+P +L RDL IL ++ + Sbjct: 386 ----PADIVVLDPPRRGCERQVLEILKQRQPQRLVYISCHPATLARDLQILMAEGSYRLT 441 Query: 343 RLALFDQFPYTRHMECGVLLVR 364 + D FP T H+E L R Sbjct: 442 QWRAADFFPQTGHVEGVAFLER 463 >gi|163813943|ref|ZP_02205337.1| hypothetical protein COPEUT_00096 [Coprococcus eutactus ATCC 27759] gi|158450813|gb|EDP27808.1| hypothetical protein COPEUT_00096 [Coprococcus eutactus ATCC 27759] Length = 457 Score = 241 bits (614), Expect = 2e-61, Method: Composition-based stats. Identities = 81/399 (20%), Positives = 151/399 (37%), Gaps = 58/399 (14%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAF-----QVPNLQIFRSEP--IHYRMRAEFHI--- 51 + Y+ QL K + ++ ++ Q + P YR + EF Sbjct: 80 GCSYQTLSYDNQLKVKEELVKGLLDGVIDGETHPYEWQGILASPVTQGYRNKMEFSFGDE 139 Query: 52 WHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMI-----------EMMATIRLEPLL 100 + DG + T + +++D + +N ++ ++ LL Sbjct: 140 YKDGPLALGLHKKNSTYDIVQMDDCYIVNDDLNKIVKYTVEFCRAAGLPYYKKMQHTGLL 199 Query: 101 RAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAI-----------RLRDALHARKYQI 149 R + + ++ + +V L+ DA A ++ LH + Sbjct: 200 RHLVIR---RSATNGDLLVNLVTSTQNLDALDLDAFVRGLLDLPLEGKIAGILHTENDSM 256 Query: 150 QLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGI 209 +++T + +Y+ E + L ++ SF Q N + + + Sbjct: 257 ADAVISDRTNLLYGTEYIYETVL----GLQFKISPFSFFQTNTKSAERLYDKARSYVGDT 312 Query: 210 QGDLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268 + ++ +LY G G + +LA +V+ VEI + +V AAR N N ++N + + Sbjct: 313 KDAVIFDLYSGTGTIAQLLAPVAKKVIGVEIVEEAVAAARVNAKLNGLDNCEFIAGDV-- 370 Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPD 326 LK ID + I +DPPR G++ + + Y ++YISC P Sbjct: 371 -------------LKVIDEIEEKPDFIVLDPPRDGINPKALTKIINYGVNELVYISCKPT 417 Query: 327 SLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364 SL RDL L + + + DQFP T H+E V + R Sbjct: 418 SLARDLVTLQENGYYVTKACAVDQFPGTVHVETIVKMQR 456 >gi|229495436|ref|ZP_04389171.1| 23S rRNA-methyltransferase RumA [Porphyromonas endodontalis ATCC 35406] gi|229317879|gb|EEN83777.1| 23S rRNA-methyltransferase RumA [Porphyromonas endodontalis ATCC 35406] Length = 475 Score = 241 bits (614), Expect = 2e-61, Method: Composition-based stats. Identities = 77/406 (18%), Positives = 141/406 (34%), Gaps = 60/406 (14%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFHIW---- 52 YE+QL K ++R M + E YR + EF Sbjct: 84 GCKWQHIPYEEQLTAKATQVRDAMERLGKVEVGEYLPILGSQETYQYRNKLEFTFSNRRW 143 Query: 53 -------------HDGDDLYHIMFDQQT-KERMRIDYFMPGSLLINALMIEMMATIRLEP 98 + D+ + + I+ G+ L N + + A Sbjct: 144 RTSEELASLPEGLGEADNSGLGFHIPGKFDKVLDIEECHLGNELSNRIRNFVRAYCLERI 203 Query: 99 L------LRAKLFQIDYL----TSQSDQAIVTLIYHRLLDDAWRECAIRLRDA------L 142 LRA+ + L TS+ ++ H D A + L Sbjct: 204 ERYPFYDLRAQEGGMRTLMIRTTSKGHTMVLVAFAHEKAHDREELLAAIHHEFPEVNSLL 263 Query: 143 HARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWV 202 + ++ + +++E + L +R SF Q N+ + L V Sbjct: 264 YVINTKLNDTFTDLSVETYYGSPFIEEEM----EGLTFRIGPKSFYQTNSHQALE-LYRV 318 Query: 203 LAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK 260 + G+ G+ + +LY G G + +AR +V+ +E ++E A N N ++N Sbjct: 319 ARSFAGLTGEEIVYDLYTGTGTIANFVARDAKKVVGIEYIPEAIEDAHLNSQVNKIDNTI 378 Query: 261 IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHI 318 K+ ++ + DPPR+G+ + + A P I Sbjct: 379 FYAGDMKDILT-----------PELIARHGAPDVVITDPPRAGMHPDVIKTLLGAAPPRI 427 Query: 319 LYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLV 363 +Y+SCNP + RD ++L + + ++ D FP+T H+E +LL Sbjct: 428 VYVSCNPATQARDAALLVEGGYRVLKVQPVDMFPHTHHVENVMLLE 473 >gi|188495297|ref|ZP_03002567.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli 53638] gi|188490496|gb|EDU65599.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli 53638] Length = 433 Score = 241 bits (614), Expect = 2e-61, Method: Composition-based stats. Identities = 84/368 (22%), Positives = 142/368 (38%), Gaps = 30/368 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWH--DGDDLY 59 + Q K L ++M + ++ P YR RA + + L Sbjct: 89 GCQQQHASVDLQQRSKSAALARLM---KHDVSEVIADVPWGYRRRARLSLNYLPKTQQLQ 145 Query: 60 HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119 + + + + + + AL+ ++ A + +R L ++ + + S ++ Sbjct: 146 MGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMRH-LGHVELVQATSGTLMI 204 Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179 L + L A RE R H+ + L + + E L Sbjct: 205 -LRHTAPLSSADREKLERFS---HSEGLDLYLAPDSEILETVSG-----EMPWYDSNGLR 255 Query: 180 YRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVE 238 F Q NAG+N M+ L + +L+L+CG GNF+L LA V+ VE Sbjct: 256 LTFSPCDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVE 315 Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298 VE + N N + NV + +E + F + +D Sbjct: 316 GVPALVEKGQQNARLNGLQNVTFYHENLEE------------DVTKQPWAKNGFDKVLLD 363 Query: 299 PPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHM 356 P R+G +++ P I+Y+SCNP +L RD ++L +TI RLA+ D FP+T H+ Sbjct: 364 PARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHL 423 Query: 357 ECGVLLVR 364 E VL R Sbjct: 424 ESMVLFSR 431 >gi|282877944|ref|ZP_06286753.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella buccalis ATCC 35310] gi|281299945|gb|EFA92305.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella buccalis ATCC 35310] Length = 508 Score = 241 bits (614), Expect = 2e-61, Method: Composition-based stats. Identities = 80/405 (19%), Positives = 149/405 (36%), Gaps = 57/405 (14%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRS-----EPIHYRMRAEFH------ 50 + YE+QL K ++ + L FR + YR + EF Sbjct: 120 GCKWQMLPYEEQLKAKQKQVHDQLERIGKIELPEFRPIMGSEKTYEYRNKLEFGCSNKRW 179 Query: 51 ---------IWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-- 99 + +D + + I+ L N + + + Sbjct: 180 LTWEEVTSGVKYDHMNAIGFHITGAFDKIYPIEKCWLMDDLCNQIRNCIRDYAIDHDISF 239 Query: 100 --LRA---KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQ---- 150 LRA L I ++ + + +V L+ + ++ + A L + QI Sbjct: 240 FDLRAQTGLLRDIMIRSANTGEWMV-LVQFKFQEEGDEQRAHGLLQHVADSFPQITSLLY 298 Query: 151 ------LIGRANKTKICL-DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL 203 ++T + +D++ E + L ++ SF Q N H+ Sbjct: 299 VDNQKCNDTFGDQTVVVFKGKDHITETMG----DLKFKVAAKSFYQTNTNQAYHLYSVAR 354 Query: 204 AATKGIQGDLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262 + +L+ +LY G G + +AR V+ +E + +++ A+ N AAN ++N + Sbjct: 355 EFAQLTGKELVYDLYTGTGTIANFVAREAREVIGIEYVEDAIKDAKVNSAANDIHNTQFY 414 Query: 263 RMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILY 320 K+ ++ R I DPPR+G+ V + A I+Y Sbjct: 415 AGDMKDILT-----------EEFIAEHGRPDVIITDPPRAGMHPDVVRTILGAAPQRIVY 463 Query: 321 ISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 +SCNP + RDL +L + + + D FP+T H+E VLL ++ Sbjct: 464 VSCNPATQARDLQMLDEQYKVMAVQPVDMFPHTPHVENVVLLEQR 508 >gi|166033314|ref|ZP_02236143.1| hypothetical protein DORFOR_03040 [Dorea formicigenerans ATCC 27755] gi|166027671|gb|EDR46428.1| hypothetical protein DORFOR_03040 [Dorea formicigenerans ATCC 27755] Length = 461 Score = 241 bits (614), Expect = 2e-61, Method: Composition-based stats. Identities = 85/400 (21%), Positives = 147/400 (36%), Gaps = 53/400 (13%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ---IFRSE-PIHYRMRAEFHIW--HDG 55 T YE+Q+ K +++ MM + + S YR + EF + Sbjct: 81 GCTYQNLPYEEQVKLKESQVKAMMDEAVDGDYIWEGVLESPVRSEYRNKMEFSFGDEYKD 140 Query: 56 DDLYHIMFDQQT-KERMRIDYFMPGSLLINALMIEMMAT-----------IRLEPLLRAK 103 L M + + + + + ++ + +R E R Sbjct: 141 GPLALGMHKRGSFHDIVNVCDCQIVDGDYRKILACTLECARESGLPYYHRMRHEGYFRHL 200 Query: 104 LFQIDYLTSQSDQAIVTLIYH------RLLDDAWR------ECAIRLRDALHARKYQIQL 151 L + T + IVT + D W E + ++ LH + + Sbjct: 201 LVRKAVKTEEILIDIVTASEEGFGSKPKEFLDKWAAALQALELSGKIVGILHTKNDSLAD 260 Query: 152 IGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG 211 + + T++ +DY E L L ++ SF Q N+ + E Sbjct: 261 VVKDEGTEVLFGQDYFYEELL----GLKFKITPFSFFQTNSLGAEVLYEKAREYIGDTNE 316 Query: 212 DLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270 ++ +LY G G + +LA +V+ VEI + +VEAA+ N N ++N Sbjct: 317 KVVFDLYSGTGTIAQILAPVAKKVVGVEIVEEAVEAAKVNAKLNGLDNCTFWAGDV---- 372 Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSL 328 LK ID I +DPPR G++ + + ++YI+C P SL Sbjct: 373 -----------LKVIDELGEVPDLIMLDPPRDGVNPKALMKILNFGVDRLVYIACKPTSL 421 Query: 329 CRDLSILST-THTIERLALFDQFPYTRHMECGVLLVRKPS 367 RDL ++ + +E++A D FP T H+E L R S Sbjct: 422 ARDLEMIQGRGYKVEKIACVDLFPNTVHVEVVCCLHRVNS 461 >gi|153214523|ref|ZP_01949432.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio cholerae 1587] gi|124115325|gb|EAY34145.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio cholerae 1587] Length = 440 Score = 241 bits (614), Expect = 2e-61, Method: Composition-based stats. Identities = 87/373 (23%), Positives = 153/373 (41%), Gaps = 32/373 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFR---SEPIHYRMRAEFHIWHDGD-- 56 L Q+ K L Q+M+ F +L + S+ YR RA + D Sbjct: 90 GCDLQHLDRAGQIHHKQQALSQLMVKFAGQSLALSAPVCSDDQGYRRRARLSLMWDKKTQ 149 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116 L +Q+K + + +NAL+ ++ A + E +L ++ + + + Sbjct: 150 QLQLGFRRKQSKAIVNVTDCPVLEPSLNALLPDLNALLS-EWSQPERLGHVELVKGDNTR 208 Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR-DYVDERLTVAG 175 +V R L + RL D + + L+ A + + Y +E Sbjct: 209 VLVL----RHLGALIEQDQQRLTDFASQNQLTLYLMLEAGELQHVQGEAPYCEET----- 259 Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRV 234 + + F Q N +N HM+ L Q +L+L+CG GNF+L LA+ V Sbjct: 260 -GSRLSFLPSHFIQVNRAVNQHMVAQALNWLEVSPQERVLDLFCGLGNFTLPLAKQAQAV 318 Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294 + VE V+ A +N N +NNV + + ++ + +F Sbjct: 319 VGVEGVDEMVQHATHNAKLNQINNVAFYQANLEQ------------DMTSASWAQQKFAK 366 Query: 295 IFVDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPY 352 + +DP R+G + + ++Y+SCNP +L RD S+LS +++L + D FP+ Sbjct: 367 VLLDPARAGAEGIVDQLSALGAKRVVYVSCNPATLARDSQSLLSQGFRLDKLGMLDMFPH 426 Query: 353 TRHMECGVLLVRK 365 T H+E L V+K Sbjct: 427 TSHLESMALFVKK 439 >gi|237719530|ref|ZP_04550011.1| RNA methyltransferase [Bacteroides sp. 2_2_4] gi|229451390|gb|EEO57181.1| RNA methyltransferase [Bacteroides sp. 2_2_4] Length = 472 Score = 241 bits (614), Expect = 2e-61, Method: Composition-based stats. Identities = 73/399 (18%), Positives = 142/399 (35%), Gaps = 59/399 (14%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFH------------- 50 Y +Q+ K ++ + + + YR + EF Sbjct: 91 PYSEQIRYKQKQVEDNLRRIGKIELPEISPILGSDKTEFYRNKLEFTFSNKRWLTNEEVR 150 Query: 51 --IWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----LRAK- 103 + +D + + + I+ + N + + LR + Sbjct: 151 QDVKYDQMNAVGFHIPGAFDKVLAIEKCWLQDDISNRIRNAVRDYAYEHDYSFINLRTQE 210 Query: 104 --LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDA-----------LHARKYQIQ 150 L + TS + + +V +I ++ +D E +L L+ + Sbjct: 211 GMLRNMIVRTSSTGELMVIVIC-KITEDHEMELFKQLLQFVADSFPEITSLLYIINNKCN 269 Query: 151 LIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ 210 + +D++ E + L ++ SF Q N+ + L V G+ Sbjct: 270 DTINDLDVHVFKGKDHIFEEM----EGLRFKVGPKSFYQTNSEQAYN-LYKVAREFTGLT 324 Query: 211 GD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268 G+ + +LY G G + ++R +V+ +E ++E A+ N N + N K+ Sbjct: 325 GNELVYDLYTGTGTIANFVSRQARQVIGIEYVPEAIEDAKVNAEINDIKNALFYAGDMKD 384 Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPD 326 +D R I DPPR+G+ V ++ I+Y+SCNP Sbjct: 385 ILT-----------QDFINQHGRPDVIITDPPRAGMHQDVVDVILFAEPKRIVYVSCNPA 433 Query: 327 SLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 + RDL +L + ++ + D FP+T H+E VLL + Sbjct: 434 TQARDLQLLDEKYKVKAIQPVDMFPHTHHVENVVLLELR 472 >gi|150005861|ref|YP_001300605.1| RNA methyltransferase [Bacteroides vulgatus ATCC 8482] gi|149934285|gb|ABR40983.1| RNA methyltransferase [Bacteroides vulgatus ATCC 8482] Length = 473 Score = 241 bits (614), Expect = 2e-61, Method: Composition-based stats. Identities = 76/404 (18%), Positives = 154/404 (38%), Gaps = 62/404 (15%) Query: 4 TLLIDQYEQQLAEKVDRLRQMML---AFQVPNLQIFRSEPIH--YRMRAEFH-------- 50 L Y +Q+ K ++ + ++P + YR + EF Sbjct: 89 CLP---YTEQIKYKQKQVTDNLTRIGKIELPEISPIMGSEKTEFYRNKLEFTFSNKRWLT 145 Query: 51 -------IWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL---- 99 + +D + + + I+ + N + + Sbjct: 146 EEEVKEDVKYDQMNAVGFHIPGAFDKVLAIEKCWLQDDISNQIRNAIRDYAYEHNYSFFN 205 Query: 100 LRAK---LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGR-- 154 LR++ L + TS + + +V L+ ++++++ + +L + QI + Sbjct: 206 LRSQEGMLRNLMIRTSSTGELMV-LLQCKIVEESEMDLMKQLLAFVAEHFPQITSLLYVV 264 Query: 155 -------ANKTKICL--DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA 205 N ++ + D++ E + L ++ SF Q N+G + L V Sbjct: 265 NNKCNDTINDLEVMVFKGNDHIFEEM----EGLRFKIGAKSFYQTNSGQAYN-LYKVARN 319 Query: 206 TKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVR 263 G+ G + +LY G G + ++R +V+ +E ++E A+ N A N ++N Sbjct: 320 FAGLTGKELVYDLYTGTGTIANFVSRQAKKVIGIEYVPEAIEDAKVNSAINGIDNTLFYA 379 Query: 264 MSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYI 321 K+ ++ R I DPPR+G+ + + + I+Y+ Sbjct: 380 GDMKDILT-----------QEFINQHGRPDVIITDPPRAGMHNDVINTILFAEPQRIVYV 428 Query: 322 SCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 SCNP + RDLS+L + + + D FP+T H+E VLL ++ Sbjct: 429 SCNPATQARDLSLLDAKYKVMAVQPVDMFPHTHHVENVVLLEKR 472 >gi|260174511|ref|ZP_05760923.1| RNA methyltransferase [Bacteroides sp. D2] Length = 456 Score = 241 bits (614), Expect = 2e-61, Method: Composition-based stats. Identities = 73/399 (18%), Positives = 142/399 (35%), Gaps = 59/399 (14%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFH------------- 50 Y +Q+ K ++ + + + YR + EF Sbjct: 75 PYSEQIRYKQKQVEDNLRRIGKIELSEISPILGSDKTEFYRNKLEFTFSNKRWLTNEEVR 134 Query: 51 --IWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----LRAK- 103 + +D + + + I+ + N + + LR + Sbjct: 135 QDVKYDQMNAVGFHIPGAFDKVLAIEKCWLQDDISNRIRNAVRDYAYEHDYSFINLRTQE 194 Query: 104 --LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDA-----------LHARKYQIQ 150 L + TS + + +V +I ++ +D E +L L+ + Sbjct: 195 GMLRNMIVRTSSTGELMVIVIC-KITEDHEMELFKQLLQFVADSFPEITSLLYIINNKCN 253 Query: 151 LIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ 210 + +D++ E + L ++ SF Q N+ + L V G+ Sbjct: 254 DTINDLDVHVFKGKDHIFEEM----EGLRFKVGPKSFYQTNSEQAYN-LYKVAREFAGLT 308 Query: 211 GD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268 G+ + +LY G G + ++R +V+ +E ++E A+ N N + N K+ Sbjct: 309 GNELVYDLYTGTGTIANFVSRQARQVIGIEYVPEAIEDAKINAEINDIKNALFYAGDMKD 368 Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPD 326 +D R I DPPR+G+ V ++ I+Y+SCNP Sbjct: 369 ILT-----------QDFINQHGRPDVIITDPPRAGMHQDVVDVILFAEPKRIVYVSCNPA 417 Query: 327 SLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 + RDL +L + ++ + D FP+T H+E VLL + Sbjct: 418 TQARDLQLLDEKYKVKAIQPVDMFPHTHHVENVVLLELR 456 >gi|254520203|ref|ZP_05132259.1| RNA methyltransferase [Clostridium sp. 7_2_43FAA] gi|226913952|gb|EEH99153.1| RNA methyltransferase [Clostridium sp. 7_2_43FAA] Length = 453 Score = 241 bits (614), Expect = 2e-61, Method: Composition-based stats. Identities = 78/393 (19%), Positives = 144/393 (36%), Gaps = 47/393 (11%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIW---HD 54 T Y++QL + ++ + +P + + E YR + EF Sbjct: 79 GCTSQNLTYDKQLDLLSEEVKALFKEADIPMGEYLGVVGSKEQWEYRNKMEFTFGDFEKG 138 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMAT-----------IRLEPLLRAK 103 G+ + ++ + +D + ++ E + ++ E LR Sbjct: 139 GELTLGMHMKGKSFGIITVDKCLIVDEDFKTVIRETVNYFKDKELPYYRVMKREGYLRHL 198 Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAI------RLRDALHARKYQIQLIGRANK 157 + + T + IVT + + +L LH K Sbjct: 199 VIRKAINTGELMVNIVTTTQINFDLSEYVDLLKSQTYKGKLVSILHTENNSFSDAVIPEK 258 Query: 158 TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-EL 216 + +DY+ E L L ++ SF Q N + V ++ +L Sbjct: 259 VNLLFGKDYITENLL----GLQFKISPFSFFQTNTKGAESLYSIVRDFMGESNDKVVFDL 314 Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276 YCG G + A + +V+ +E+ + +VEAA+ N N++NN + + E + ++ Sbjct: 315 YCGTGTIGQIAASNAKKVVGIELIEEAVEAAKENAKLNNLNNCEFLAGDVAEIIKTVK-- 372 Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSI 334 + I +DPPRSG+ + V + I+Y+SCNP +L +L Sbjct: 373 -------------DKPDIIILDPPRSGVHPKALEYVIKFNAKEIIYVSCNPKTLVENLRD 419 Query: 335 L-STTHTIERLALFDQFPYTRHMECGVLLVRKP 366 L + + + + D FP T H E V LV K Sbjct: 420 LIGAGYKVVQSTVKDMFPNTPHAEVVVKLVLKD 452 >gi|315608157|ref|ZP_07883149.1| 23S rRNA (uracil-5-)-methyltransferase [Prevotella buccae ATCC 33574] gi|315250126|gb|EFU30123.1| 23S rRNA (uracil-5-)-methyltransferase [Prevotella buccae ATCC 33574] Length = 490 Score = 241 bits (614), Expect = 2e-61, Method: Composition-based stats. Identities = 78/399 (19%), Positives = 143/399 (35%), Gaps = 59/399 (14%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPNLQIFRS-----EPIHYRMRAEFHIWHDG-------- 55 Y++Q+ K ++ + L FR + YR + EF + Sbjct: 109 PYQEQIKAKQQQVYDQLSRIGKVELPEFRPIMGSVKTQEYRNKIEFGCSNKRWLTKEEVA 168 Query: 56 -DDLYHIMFDQQTK------ERMRIDYFMPGSLLINALMIEMMATIRLEPL-------LR 101 + M + I+ L N + + + Sbjct: 169 SGTEFTNMNAIGFHITGAFDKIYPIEKCGLMDDLNNRIRNAIRDFAFATEISFYDIRQQH 228 Query: 102 AKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTK-- 159 L + S + + +V + +H ++ A+ L + + +I + + K Sbjct: 229 GLLRDVMIRNSNTGEWMVLVQFHYD-EEGDEAKALALLQHIGDKFPEITSLLYVDNQKCN 287 Query: 160 ---------ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ 210 + D++ E + L ++ SF Q N H+ V + Sbjct: 288 DTFGDLPISVYKGNDHIFEVM----EGLRFKVGPKSFYQTNTEQAYHLYS-VAREFSQLT 342 Query: 211 GD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268 GD + +LY G G + +AR +V+ +E ++E A+ N N ++N K+ Sbjct: 343 GDELVYDLYTGTGTIANFVAREAKQVIGIEYVPEAIEDAKVNSEINGIDNTLFYAGDMKD 402 Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPD 326 + R I DPPR+G+ V + A I+Y+SCNP Sbjct: 403 ILND-----------EFIRQHGRPDVIITDPPRAGMHADVVNTILHAAPRRIVYVSCNPA 451 Query: 327 SLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 + RDL++L + +E + D FP+T H+E VLLVR+ Sbjct: 452 TQARDLNLLDVDYRVEEVQPVDMFPHTPHVENVVLLVRR 490 >gi|329964803|ref|ZP_08301826.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides fluxus YIT 12057] gi|328524654|gb|EGF51717.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides fluxus YIT 12057] Length = 511 Score = 241 bits (614), Expect = 2e-61, Method: Composition-based stats. Identities = 76/400 (19%), Positives = 146/400 (36%), Gaps = 57/400 (14%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFHIWHDG-------- 55 Y +Q+ K ++ + + + YR + E+ + Sbjct: 127 PYSEQIKYKQKQITDNLTRIGKIELPEISPILGSEKTQFYRNKLEYTFSNKRWLTSEEVQ 186 Query: 56 -DDLYHIMFDQQTK------ERMRIDYFMPGSLLINALMIEMMATIRLEPL----LRAK- 103 + +Y M + + I+ + N + + LR Sbjct: 187 QNVVYEQMNAVGFHIPNAFDKVLAIEKCWLQDDISNRIRNAVRDYAYEHNYSFINLRTHE 246 Query: 104 --LFQIDYLTSQSDQAIVTLIYHRLLDDAW---RECAIRLRDALHARKYQIQLIGRA-NK 157 L + TS + + +V LI D+ ++ + D + +I N Sbjct: 247 GMLRNMIVRTSTTGELMVILICKIEKDEEMELFKQLLQHVADTFPEITSLLYIINNKCND 306 Query: 158 TKICL------DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG 211 T L +D++ E + L ++ SF Q N+ + L + G+ G Sbjct: 307 TITDLDVYTFKGKDHIFEEM----EGLRFKIGPKSFYQTNSEQAYN-LYKIARNFAGLTG 361 Query: 212 D--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269 + + +LY G G + +++ +V+ +E ++E A+ N N ++N K+ Sbjct: 362 NELVYDLYTGTGTIANFVSKQARQVIGIEYVPEAIEDAKVNAEINGIHNTLFFAGDMKDM 421 Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDS 327 +D R I DPPR+G+ V ++ I+Y+SCNP + Sbjct: 422 LT-----------QDFINQYGRPDVIITDPPRAGMHQDVVDVILFAEPKRIVYVSCNPAT 470 Query: 328 LCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRKPS 367 RDL +L T + ++ + D FP+T H+E VLL K + Sbjct: 471 QARDLQLLDTKYKVKAVQPVDMFPHTHHVENVVLLELKNN 510 >gi|119509344|ref|ZP_01628493.1| 23S rRNA methyltransferase/RumA [Nodularia spumigena CCY9414] gi|119465958|gb|EAW46846.1| 23S rRNA methyltransferase/RumA [Nodularia spumigena CCY9414] Length = 468 Score = 241 bits (614), Expect = 2e-61, Method: Composition-based stats. Identities = 75/390 (19%), Positives = 151/390 (38%), Gaps = 47/390 (12%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDG- 55 Y QL K +++ Q + + + S P+ YR ++ + + Sbjct: 81 GCQWQHIDYNYQLVAKHNQVIQALQRIGGFVNPPVDPMLTASAPLGYRNKSTYPLGISAT 140 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKL 104 + + + + + + ++ +N L+ E+ I+ + +R Sbjct: 141 GQVQAGYYQKGSHQLVNLNQCPVQDARLNPLLAEVKQDIQQRGWRIYDERKHQGQIRHLG 200 Query: 105 FQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIR----LRDALHARKYQIQLIGRANKTKI 160 +I T + +V ++ + + ++ L R ++T+ Sbjct: 201 LRIGRRTGEMLLTLVVKDWNLPGIETQAQEWLKRYPLLMGVSLNRNSDRTNAIFGSETRC 260 Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYC 218 Y+ E+ L ++ + ++F Q +L V+ + +QG L++ YC Sbjct: 261 IAGVPYLREKFA----DLEFQILPDTFFQVYTEAAEALL-QVIQSELNLQGQELLIDAYC 315 Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278 G G +L LA+ + + +E+ +V+ A N N +NNV + ++ M Sbjct: 316 GMGTLTLPLAKQVRQAIGIELQPEAVQQAIVNAQHNDINNVTFQVGAVEKLLPEM----- 370 Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCRDLSILS 336 + +DPPR G D A + ++++ P I+Y+SC +L RDL +L Sbjct: 371 ----------GIVPDVVLLDPPRKGCDRAVIDSLLRSKPSRIVYVSCKVATLARDLKLLC 420 Query: 337 TT--HTIERLALFDQFPYTRHMECGVLLVR 364 +TI R+ D FP T H+E LVR Sbjct: 421 EDGQYTITRVQPADFFPQTAHVEAVAFLVR 450 >gi|317132473|ref|YP_004091787.1| RNA methyltransferase, TrmA family [Ethanoligenens harbinense YUAN-3] gi|315470452|gb|ADU27056.1| RNA methyltransferase, TrmA family [Ethanoligenens harbinense YUAN-3] Length = 453 Score = 241 bits (614), Expect = 2e-61, Method: Composition-based stats. Identities = 77/367 (20%), Positives = 133/367 (36%), Gaps = 35/367 (9%) Query: 21 LRQMMLAFQV----PNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYF 76 +R + P + + + YR +A++ + + ++ + + Sbjct: 100 VRDALHRIAKLEIEPEPIVGCEQTLAYRNKAQYPVGWRDGRPVFGFYAPRSHRIVSAEEC 159 Query: 77 MPGS-----------LLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHR 125 + + + + +LR + T + V Sbjct: 160 LLQPSVFKNVLGAFERWMLENDVSTYDEQTGKGVLRHVFLRQAPSTGELMICAVVNGGAG 219 Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD---YVDERLTVAGRTLIYRQ 182 L + DA K + A+ I D + +R+T L + Sbjct: 220 RL-PNREQLIRYCLDAAPQTKSIVLNRNTAHTNVILGDTCETLWGADRITDVLCGLRFSL 278 Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFSLVLARHFDRVLAVEIAK 241 SF Q N+ + + D+L +LYCG G L +A R++ VE+ Sbjct: 279 SPLSFYQVNSRQAERLYHAAAEFADLRKTDVLLDLYCGVGTIGLSMAGAVGRLIGVEVVP 338 Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301 +V A+ N A N + N + E T +++ + VDPPR Sbjct: 339 DAVADAKRNAAGNGIENADFFCADAGEATVRLQQ------------QGLAPDVVVVDPPR 386 Query: 302 SGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMEC 358 GLD A V V A ++YISCNP++L RDL++ + RL +D FP T H+EC Sbjct: 387 KGLDAAAVTAVVQMAPSRVVYISCNPETLARDLTLFAEEGYVCTRLRPYDLFPRTAHVEC 446 Query: 359 GVLLVRK 365 LLV++ Sbjct: 447 CALLVKR 453 >gi|160942249|ref|ZP_02089558.1| hypothetical protein CLOBOL_07135 [Clostridium bolteae ATCC BAA-613] gi|158434806|gb|EDP12573.1| hypothetical protein CLOBOL_07135 [Clostridium bolteae ATCC BAA-613] Length = 477 Score = 240 bits (613), Expect = 2e-61, Method: Composition-based stats. Identities = 86/399 (21%), Positives = 153/399 (38%), Gaps = 57/399 (14%) Query: 2 SGTLLID-QYEQQLAEKVDRLRQMMLAF---QVPNLQIFRSEP--IHYRMRAEFHIW--H 53 G + YE+QL K ++++ ++ Q ++ P YR + EF Sbjct: 90 GGCIYQSLPYEEQLNIKKEQVKSLLDTVVEDGTYEFQGIKASPISSGYRNKMEFSFGDEV 149 Query: 54 DGDDLYHIMFDQQTKERM------RIDYFMPGSLLIN------ALMIEMMATIRLEPLLR 101 L M + + + RI + +L+ L + ++ + LR Sbjct: 150 KDGPLALGMHKRGSFYDIVTTPECRIVHPDFCRILVATKEYFEELGVAFYKKLQHQGYLR 209 Query: 102 AKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAI--------------RLRDALHARKY 147 L + T + +VT L + E + +L LH Sbjct: 210 HLLVRRAVKTGEILVDLVTSTQRDYLGERTEEEVLAEWTKKLVGLPLDGKLAGILHTEND 269 Query: 148 QIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATK 207 + + +++ T I +DY E L L +R SF Q N+ + + Sbjct: 270 SLADVVQSDATHILYGQDYFYEELL----GLRFRISPFSFFQTNSLGAEVLYDTARGFVG 325 Query: 208 GIQGDLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266 + ++ +LY G G + +LA +V+ VEI + +V +A+ N N + N + + Sbjct: 326 DTKDRVVFDLYSGTGTIAQILAPVAKKVVGVEIVEEAVRSAQVNARLNGLENCEFLAGDV 385 Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCN 324 LK ID + I VDPPR G+ +G + I+YISC Sbjct: 386 ---------------LKVIDELQDKPDLIVVDPPRDGIHPKALGKIIDFGVDRIVYISCK 430 Query: 325 PDSLCRDLSILS-TTHTIERLALFDQFPYTRHMECGVLL 362 P SL RDL +L + +E++ D FP T ++E +++ Sbjct: 431 PTSLVRDLVVLQDRGYRVEKVCGVDMFPGTGNVEVVIMM 469 >gi|160884289|ref|ZP_02065292.1| hypothetical protein BACOVA_02267 [Bacteroides ovatus ATCC 8483] gi|156110028|gb|EDO11773.1| hypothetical protein BACOVA_02267 [Bacteroides ovatus ATCC 8483] Length = 472 Score = 240 bits (613), Expect = 2e-61, Method: Composition-based stats. Identities = 73/399 (18%), Positives = 142/399 (35%), Gaps = 59/399 (14%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFH------------- 50 Y +Q+ K ++ + + + YR + EF Sbjct: 91 PYSEQIRYKQKQVEDNLRRIGKIELPEISPILGSDKTEFYRNKLEFTFSNKRWLTNEEVH 150 Query: 51 --IWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----LRAK- 103 + +D + + + I+ + N + + LR + Sbjct: 151 QDVKYDQMNAVGFHIPGAFDKVLAIEKCWLQDDISNRIRNAVRDYAYAHDYSFINLRTQE 210 Query: 104 --LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDA-----------LHARKYQIQ 150 L + TS + + +V +I ++ +D E +L L+ + Sbjct: 211 GMLRNMIVRTSSTGELMVIVIC-KITEDHEMELFKQLLQFVADSFPEITSLLYIINNKCN 269 Query: 151 LIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ 210 + +D++ E + L ++ SF Q N+ + L V G+ Sbjct: 270 DTINDLDVHVFKGKDHIFEEM----EGLRFKVGPKSFYQTNSEQAYN-LYKVAREFAGLT 324 Query: 211 GD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268 G+ + +LY G G + ++R +V+ +E ++E A+ N N + N K+ Sbjct: 325 GNELVYDLYTGTGTIANFVSRQARQVIGIEYVPEAIEDAKVNAEINDIKNALFYAGDMKD 384 Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPD 326 +D R I DPPR+G+ V ++ I+Y+SCNP Sbjct: 385 ILT-----------QDFINQHGRPDVIITDPPRAGMHQDVVDVILFAEPKRIVYVSCNPA 433 Query: 327 SLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 + RDL +L + ++ + D FP+T H+E VLL + Sbjct: 434 TQARDLQLLDEKYKVKAIQPVDMFPHTHHVENVVLLELR 472 >gi|254881958|ref|ZP_05254668.1| RNA methyltransferase [Bacteroides sp. 4_3_47FAA] gi|319641039|ref|ZP_07995743.1| RNA methyltransferase [Bacteroides sp. 3_1_40A] gi|254834751|gb|EET15060.1| RNA methyltransferase [Bacteroides sp. 4_3_47FAA] gi|317387283|gb|EFV68158.1| RNA methyltransferase [Bacteroides sp. 3_1_40A] Length = 473 Score = 240 bits (613), Expect = 2e-61, Method: Composition-based stats. Identities = 78/404 (19%), Positives = 155/404 (38%), Gaps = 62/404 (15%) Query: 4 TLLIDQYEQQLAEKVDRLRQMML---AFQVPNLQIFRSEPIH--YRMRAEFH-------- 50 L Y +Q+ K ++ + ++P + YR + EF Sbjct: 89 CLP---YTEQIKYKQKQVTDNLTRIGKIELPEILPIMGSEKTEFYRNKLEFTFSNKRWLT 145 Query: 51 -------IWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL---- 99 + +D + + + I+ + N + + Sbjct: 146 EEEVKEDVKYDQMNAVGFHIPGAFDKVLAIEKCWLQDDISNQIRNAIRDYAYEHNYSFFN 205 Query: 100 LRAK---LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGR-- 154 LR++ L + TS + + +V L+ ++++++ + +L + R QI + Sbjct: 206 LRSQEGMLRNLMIRTSSTGELMV-LLQCKIVEESEMDLMKQLLAFVAERFPQITSLLYVV 264 Query: 155 -------ANKTKICL--DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA 205 N ++ + D++ E + L ++ SF Q N+G + L V Sbjct: 265 NNKCNDTINDLEVMVFKGNDHIFEEM----EGLRFKIGAKSFYQTNSGQAYN-LYKVARN 319 Query: 206 TKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVR 263 G+ G + +LY G G + ++R +V+ +E ++E A+ N A N ++N Sbjct: 320 FAGLTGKELVYDLYTGTGTIANFVSRQAKKVIGIEYVPEAIEDAKVNSAINGIDNTLFYA 379 Query: 264 MSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYI 321 K+ ++ R I DPPR+G+ D + + I+Y+ Sbjct: 380 GDMKDILT-----------QEFINQHGRPDVIITDPPRAGMHDDVINTILFAEPQRIVYV 428 Query: 322 SCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 SCNP + RDLS+L + + + D FP+T H+E VLL ++ Sbjct: 429 SCNPATQARDLSLLDAKYKVMAVQPVDMFPHTHHVENVVLLEKR 472 >gi|170681551|ref|YP_001744947.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia coli SMS-3-5] gi|170519269|gb|ACB17447.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli SMS-3-5] Length = 433 Score = 240 bits (613), Expect = 2e-61, Method: Composition-based stats. Identities = 83/357 (23%), Positives = 140/357 (39%), Gaps = 30/357 (8%) Query: 13 QLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWH--DGDDLYHIMFDQQTKER 70 Q K L ++M + ++ P YR RA + + L + + Sbjct: 100 QQRSKSAALARLM---KHEVSEVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDI 156 Query: 71 MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDA 130 + + + AL+ ++ A + +R L ++ + + S ++ L + L Sbjct: 157 VDVKQCPILVPQLEALLPKVRACLGSLQAMRH-LGHVELVQATSGTLMI-LRHTAPLSSV 214 Query: 131 WRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQP 190 RE R H+ + L + + E L F Q Sbjct: 215 DREKLERFS---HSEGLDLYLAPDSEILETVSG-----EMPWYDSNGLRLTFSPRDFIQV 266 Query: 191 NAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249 NAG+N M+ L + +L+L+CG GNF+L LA V+ VE VE + Sbjct: 267 NAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQ 326 Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309 N N ++NV + +E + F + +DP R+G Sbjct: 327 NARLNGLHNVTFYHENLEE------------DVTKQPWAKNGFDKVLLDPARAGAAGVMQ 374 Query: 310 GMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 +++ P I+Y+SCNP +L RD ++L +TI RLA+ D FP+T H+E VL R Sbjct: 375 QIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSR 431 >gi|315922778|ref|ZP_07919018.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313696653|gb|EFS33488.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 472 Score = 240 bits (613), Expect = 2e-61, Method: Composition-based stats. Identities = 73/399 (18%), Positives = 142/399 (35%), Gaps = 59/399 (14%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFH------------- 50 Y +Q+ K ++ + + + YR + EF Sbjct: 91 PYSEQIRYKQKQVEDNLRRIGKIELSEISPILGSDKTEFYRNKLEFTFSNKRWLTNEEVR 150 Query: 51 --IWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----LRAK- 103 + +D + + + I+ + N + + LR + Sbjct: 151 QDVKYDQMNAVGFHIPGAFDKVLAIEKCWLQDDISNRIRNAVRDYAYEHDYSFINLRTQE 210 Query: 104 --LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDA-----------LHARKYQIQ 150 L + TS + + +V +I ++ +D E +L L+ + Sbjct: 211 GMLRNMIVRTSSTGELMVIVIC-KITEDHEMELFKQLLQFVADSFPEITSLLYIINNKCN 269 Query: 151 LIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ 210 + +D++ E + L ++ SF Q N+ + L V G+ Sbjct: 270 DTINDLDVHVFKGKDHIFEEM----EGLRFKVGPKSFYQTNSEQAYN-LYKVAREFAGLT 324 Query: 211 GD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268 G+ + +LY G G + ++R +V+ +E ++E A+ N N + N K+ Sbjct: 325 GNELVYDLYTGTGTIANFVSRQARQVIGIEYVPEAIEDAKINAEINDIKNALFYAGDMKD 384 Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPD 326 +D R I DPPR+G+ V ++ I+Y+SCNP Sbjct: 385 ILT-----------QDFINQHGRPDVIITDPPRAGMHQDVVDVILFAEPKRIVYVSCNPA 433 Query: 327 SLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 + RDL +L + ++ + D FP+T H+E VLL + Sbjct: 434 TQARDLQLLDEKYKVKAIQPVDMFPHTHHVENVVLLELR 472 >gi|28379606|ref|NP_786498.1| RNA methyltransferase [Lactobacillus plantarum WCFS1] gi|300769546|ref|ZP_07079432.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308181836|ref|YP_003925964.1| RNA methyltransferase [Lactobacillus plantarum subsp. plantarum ST-III] gi|50401757|sp|Q88SY9|Y3226_LACPL RecName: Full=Uncharacterized RNA methyltransferase lp_3226 gi|28272446|emb|CAD65370.1| RNA methyltransferase [Lactobacillus plantarum WCFS1] gi|300492961|gb|EFK28143.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308047327|gb|ADN99870.1| RNA methyltransferase [Lactobacillus plantarum subsp. plantarum ST-III] Length = 481 Score = 240 bits (613), Expect = 2e-61, Method: Composition-based stats. Identities = 68/389 (17%), Positives = 138/389 (35%), Gaps = 47/389 (12%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQV-------PNLQIFRSEPIHYRMRAEFHIWHDGDD 57 L Y QLA K D +RQ + ++ I + P YR +A+F + Sbjct: 111 LEHLDYPAQLAFKQDLIRQALEKYRPAGYRHYDVRPTIGMTNPYEYRNKAQFQVRLIDGH 170 Query: 58 LYHIMFDQQTKERMRIDYF---MPGSLLINALMIEMMATI--------RLEPLLRAKLFQ 106 + ++ + + + + + MP ++ + ++ + + +++ + + Sbjct: 171 VAAGLYKENSHDLVDLPTCSVQMPATMTVMRQVVAWLEELQVPIYDEEHNSGIVKTIVVR 230 Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIG-------RANKTK 159 T + +T + +++ + L +Q I ++T Sbjct: 231 EAAATGEIQLVFITNT---PKLPKKHQLLMKIAEKLPMVVSVMQNINAGKTSLIWGDQTT 287 Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYC 218 + + + E L L++ +F Q N + A L++ Y Sbjct: 288 LLAGKPTITEEL----DGLVFDLSARAFFQLNPQQTKKLYRLAREALNLAPNETLVDAYS 343 Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278 G G L LA V ++ +V A N N + N ++ Sbjct: 344 GVGTIGLSLADVAKEVRGMDTIPAAVADANANAQRNQITNAHYEVGEAEVLLPQWLA--- 400 Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILS 336 + + VDPPR+GLD+ + + A ++YISCNP +L +DL L+ Sbjct: 401 ---------SGFAPDAMVVDPPRTGLDNVLIDAILQSAPEKLVYISCNPSTLAQDLQALT 451 Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVRK 365 + ++ + D FP T E V ++ Sbjct: 452 RGYQVDYIQSIDMFPQTARCEAVVRFTKR 480 >gi|187731305|ref|YP_001881474.1| 23S rRNA 5-methyluridine methyltransferase [Shigella boydii CDC 3083-94] gi|187428297|gb|ACD07571.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Shigella boydii CDC 3083-94] Length = 433 Score = 240 bits (613), Expect = 2e-61, Method: Composition-based stats. Identities = 84/368 (22%), Positives = 142/368 (38%), Gaps = 30/368 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWH--DGDDLY 59 + Q K L ++M + ++ P YR RA + + L Sbjct: 89 GCQQQHASVDLQQRSKSAALARLM---KHEVSEVIADVPWGYRRRARLSLNYLPKTQQLQ 145 Query: 60 HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119 + + + + + + AL+ ++ A + +R L ++ + + S ++ Sbjct: 146 MGLRKAGSSDIVDVKQCPILVPQLEALLPKVRACLGSLQAMRH-LGHVELVQATSSTLMI 204 Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179 L + L A RE R H+ + L + + E L Sbjct: 205 -LRHTAPLSSADREKLERFS---HSEGLDLYLAPDSEILETVSG-----EMPWYDSNGLR 255 Query: 180 YRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVE 238 F Q NAG+N M+ L + +L+L+CG GNF+L LA V+ VE Sbjct: 256 LTFSPRDFIQVNAGVNQKMVASALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVE 315 Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298 VE + N N + NV + +E + F + +D Sbjct: 316 GVPALVEKGQQNARLNGLQNVTFYHENLEE------------DVTKQPWAKNGFDKVLLD 363 Query: 299 PPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHM 356 P R+G +++ P I+Y+SCNP +L RD ++L +TI RLA+ D FP+T H+ Sbjct: 364 PARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHL 423 Query: 357 ECGVLLVR 364 E VL R Sbjct: 424 ESMVLFSR 431 >gi|189501463|ref|YP_001960933.1| RNA methyltransferase, TrmA family [Chlorobium phaeobacteroides BS1] gi|189496904|gb|ACE05452.1| RNA methyltransferase, TrmA family [Chlorobium phaeobacteroides BS1] Length = 480 Score = 240 bits (613), Expect = 2e-61, Method: Composition-based stats. Identities = 86/407 (21%), Positives = 150/407 (36%), Gaps = 61/407 (14%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMM---LAFQVPNLQIFRSEP--IHYRMRAEFHI----- 51 + Y+ QL K ++ + FQ ++ P +HYR + EF Sbjct: 89 GCKWMHVGYDAQLRYKQKKVHDALVHIGGFQDTAVKPVLPAPDIMHYRNKVEFSCSSKRY 148 Query: 52 ---------WHDGDDLYHIMFDQQTK--ERMRIDYFMPGSLLINALMIEMMATIRLEPL- 99 + + + F + + I+ +N + A E L Sbjct: 149 LMPEELKMERLEKSKDFALGFHAPGNFEKVLEIEACYLAKESMNNALTVTRAFALEEGLS 208 Query: 100 ----------LRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQI 149 LR + + + + D+ +V L+ + RL +A+ +K I Sbjct: 209 PYAAREHTGFLRNLMLR---YSEERDELMVNLVTSSYDSALMKAYRDRLLEAMPGQKMTI 265 Query: 150 QL--------IGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEW 201 + K + + ERL L +R NSF Q N + + Sbjct: 266 VNNVTTRKNTVAVGEKEFVVHGEGVIQERLG----DLQFRISANSFFQTNTKQAEALYDG 321 Query: 202 VLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK 260 ++ + D + +LYCG G +L LA + + +EI + S+ A N + N + N Sbjct: 322 IMQMAGLRKDDTVYDLYCGTGTITLYLAERCRQAVGLEIVESSLSDAAENASRNGIANAS 381 Query: 261 IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-I 318 R+ K+F + EF + I DPPR+G+ + MV+ P I Sbjct: 382 FYRVDLKDFHTLLGTLEEFG----------FPRVIVTDPPRAGMHPKALKTMVRLQPETI 431 Query: 319 LYISCNPDSLCRDLSILSTT-HTIERLALFDQFPYTRHMECGVLLVR 364 +Y+SCNP +L RD + + +E + D FP+T H+E R Sbjct: 432 VYVSCNPANLARDGKEICAANYRLEEVQPVDMFPHTSHIETLACFKR 478 >gi|218701501|ref|YP_002409130.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia coli IAI39] gi|218371487|emb|CAR19323.1| 23S rRNA (uracil-5)-methyltransferase [Escherichia coli IAI39] Length = 433 Score = 240 bits (613), Expect = 2e-61, Method: Composition-based stats. Identities = 84/357 (23%), Positives = 142/357 (39%), Gaps = 30/357 (8%) Query: 13 QLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWH--DGDDLYHIMFDQQTKER 70 Q K L ++M + ++ P YR RA + + L + + Sbjct: 100 QQRSKSAALARLM---KHEVSEVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDI 156 Query: 71 MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDA 130 + + + AL+ ++ A + +R L ++ + + S ++ L + L A Sbjct: 157 VDVKQCPILVPQLEALLPKVRACLGSLQAMRH-LGHVELVQATSGTLMI-LRHTAPLSSA 214 Query: 131 WRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQP 190 RE +L H+ + L + + E L F Q Sbjct: 215 DRE---KLECFSHSEGLDLYLAPDSEILETVSG-----EMPWYDSNGLRLTFSPRDFIQV 266 Query: 191 NAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249 NAG+N M+ L + +L+L+CG GNF+L LA V+ VE VE + Sbjct: 267 NAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQ 326 Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309 N N ++NV + +E + F + +DP R+G Sbjct: 327 NARLNGLHNVTFYHENLEE------------DVTKQPWAKNGFDKVLLDPARAGAAGVMQ 374 Query: 310 GMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 +++ P I+Y+SCNP +L RD ++L +TI RLA+ D FP+T H+E VL R Sbjct: 375 QIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSR 431 >gi|299146119|ref|ZP_07039187.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides sp. 3_1_23] gi|298516610|gb|EFI40491.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides sp. 3_1_23] Length = 472 Score = 240 bits (613), Expect = 2e-61, Method: Composition-based stats. Identities = 73/399 (18%), Positives = 142/399 (35%), Gaps = 59/399 (14%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFH------------- 50 Y +Q+ K ++ + + + YR + EF Sbjct: 91 PYSEQIRYKQKQVEDNLRRIGKIELPEISPILGSDKTEFYRNKLEFTFSNKRWLTNEEVR 150 Query: 51 --IWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----LRAK- 103 + +D + + + I+ + N + + LR + Sbjct: 151 QDVKYDQMNAVGFHIPGAFDKVLAIEKCWLQDDISNRIRNAVRDYAYEHDYSFINLRTQE 210 Query: 104 --LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDA-----------LHARKYQIQ 150 L + TS + + +V +I ++ +D E +L L+ + Sbjct: 211 GMLRNMIVRTSSTGELMVIVIC-KITEDHEMELFKQLLQFVADSFPEITSLLYIINNKCN 269 Query: 151 LIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ 210 + +D++ E + L ++ SF Q N+ + L V G+ Sbjct: 270 DTINDLDVHVFKGKDHIFEEM----EGLRFKVGPKSFYQTNSEQAYN-LYKVAREFAGLT 324 Query: 211 GD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268 G+ + +LY G G + ++R +V+ +E ++E A+ N N + N K+ Sbjct: 325 GNELVYDLYTGTGTIANFVSRQARQVIGIEYVPEAIEDAKVNAEINDIKNALFYAGDMKD 384 Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPD 326 +D R I DPPR+G+ V ++ I+Y+SCNP Sbjct: 385 ILT-----------QDFINQHGRPDVIITDPPRAGMHQDVVDVILFAEPKRIVYVSCNPA 433 Query: 327 SLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 + RDL +L + ++ + D FP+T H+E VLL + Sbjct: 434 TQARDLQLLDEKYKVKAIQPVDMFPHTHHVENVVLLELR 472 >gi|326693283|ref|ZP_08230288.1| 23S rRNA (uracil-5-)-methyltransferase [Leuconostoc argentinum KCTC 3773] Length = 458 Score = 240 bits (613), Expect = 2e-61, Method: Composition-based stats. Identities = 72/386 (18%), Positives = 140/386 (36%), Gaps = 45/386 (11%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQ---VPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHI 61 L+ +Y+ QL K +++++ I ++P +YR + + L Sbjct: 90 LVNLKYQAQLDLKQTQVQRLFAQRGLDVTVAPTIGMADPTYYRNKTIVPVKWQNGHLTSG 149 Query: 62 MFDQQTKERMRIDYFMPGSLLINALMIEMMATI-----------RLEPLLRAKLFQIDYL 110 + + T + + + + I+ ++ + + R +R + + Y Sbjct: 150 FYRRGTHDLVPMTDYFVNDAKIDQAIVVVRDILEKYQISAFDTDRQTGAIRYIMIRRGYY 209 Query: 111 TSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANK-------TKICLD 163 S + +V L+ + + LR L K I + Sbjct: 210 ---SHELMVVLVSNDATIPHEADVITALRAELPELKSLIFNFSPKKDFVLLSPNNRTLWG 266 Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGN 222 D + + L + NSF Q N + + A +++ Y G G Sbjct: 267 DDAIHDTLL----GYQFVIGPNSFYQVNPQTTEVLYDLAAQKAQLQPTDTVIDAYSGIGT 322 Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282 + +A +VL VE+ +V A++N+ N + N + + E + Sbjct: 323 IGITVANRVKQVLGVEVVPGAVADAQHNMRLNGIQNATYLLADAPE------------KF 370 Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STTH 339 K + + + +FVDPPR GL + ++YISCNP +L RD + + + Sbjct: 371 KIWEAAQLQPEVVFVDPPRRGLTSELIQATVDMGPERLVYISCNPVTLARDAAEIVQKGY 430 Query: 340 TIER-LALFDQFPYTRHMECGVLLVR 364 IE + DQFP T H+E + + Sbjct: 431 QIEGPVQPVDQFPQTSHVESITVFKK 456 >gi|194434671|ref|ZP_03066925.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Shigella dysenteriae 1012] gi|194417068|gb|EDX33183.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Shigella dysenteriae 1012] gi|332089082|gb|EGI94192.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Shigella dysenteriae 155-74] Length = 433 Score = 240 bits (613), Expect = 2e-61, Method: Composition-based stats. Identities = 84/368 (22%), Positives = 143/368 (38%), Gaps = 30/368 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWH--DGDDLY 59 + Q K L ++M + ++ P YR RA + + L Sbjct: 89 GCQQQHASVDLQQRSKSAALARLM---KHEVSEVIADVPWGYRRRARLSLNYLPKTQQLQ 145 Query: 60 HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119 + + + + + AL+ ++ A + +R L ++ + + S ++ Sbjct: 146 MGFRKAGSSDIVDVKQCPILVPQLEALLPKVRACLGSLQAMRH-LGHVELVQATSGTLMI 204 Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179 L + L A RE R H+ + L + + E L Sbjct: 205 -LRHTAPLSSADREKLERFS---HSEGLDLYLAPDSEILETVSG-----EMPWYDSNGLR 255 Query: 180 YRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVE 238 F Q NAG+N M+ L + +L+L+CG GNF+L LA V++VE Sbjct: 256 LTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVSVE 315 Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298 VE + N N + NV + +E + + F + +D Sbjct: 316 GVPALVEKGQQNARLNGLQNVTFYHENLEE------------DVTNQPWAKNGFDKVLLD 363 Query: 299 PPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHM 356 P R+G +++ P I+Y+SCNP +L RD ++L +TI RLA+ D FP+T H+ Sbjct: 364 PARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHL 423 Query: 357 ECGVLLVR 364 E VL R Sbjct: 424 ESMVLFSR 431 >gi|237714574|ref|ZP_04545055.1| RNA methyltransferase [Bacteroides sp. D1] gi|229445343|gb|EEO51134.1| RNA methyltransferase [Bacteroides sp. D1] Length = 462 Score = 240 bits (613), Expect = 3e-61, Method: Composition-based stats. Identities = 71/399 (17%), Positives = 142/399 (35%), Gaps = 59/399 (14%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFH------------- 50 Y +Q+ K ++ + + + YR + EF Sbjct: 81 PYSEQIRYKQKQVEDNLRRIGKIELPEISPILGSDKTEFYRNKLEFTFSNKRWLTNEEVR 140 Query: 51 --IWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----LRAK- 103 + +D + + + I+ + N + + LR + Sbjct: 141 QDVKYDQMNAVGFHIPGAFDKVLAIEKCWLQDDISNRIRNAVRDYAYEHDYSFINLRTQE 200 Query: 104 --LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDA-----------LHARKYQIQ 150 L + TS + + +V +I ++ +D E +L L+ + Sbjct: 201 GMLRNMIIRTSSTGELMVIVIC-KITEDHEMELFKQLLQFVADSFPEITSLLYIINNKCN 259 Query: 151 LIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ 210 + +D++ E + L ++ SF Q N+ + L + G+ Sbjct: 260 DTINDLDVHVFKGKDHIFEEM----EGLRFKVGPKSFYQTNSEQAYN-LYKIARNFAGLT 314 Query: 211 GD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268 G+ + +LY G G + ++R +V+ +E ++E A+ N N + N K+ Sbjct: 315 GNELVYDLYTGTGTIANFVSRQARQVIGIEYVPEAIEDAKVNAEINDIKNAIFYAGDMKD 374 Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPD 326 +D R I DPPR+G+ + ++ I+Y+SCNP Sbjct: 375 MLT-----------QDFINQHGRPDVIITDPPRAGMHQDVIDVILFAEPKRIVYVSCNPA 423 Query: 327 SLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 + RDL +L + ++ + D FP+T H+E VLL + Sbjct: 424 TQARDLQLLDEKYKVKAVQPVDMFPHTHHVENVVLLELR 462 >gi|270294142|ref|ZP_06200344.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides sp. D20] gi|317478899|ref|ZP_07938047.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides sp. 4_1_36] gi|270275609|gb|EFA21469.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides sp. D20] gi|316904933|gb|EFV26739.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides sp. 4_1_36] Length = 473 Score = 240 bits (612), Expect = 3e-61, Method: Composition-based stats. Identities = 76/399 (19%), Positives = 144/399 (36%), Gaps = 57/399 (14%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFHIWHDG-------- 55 Y +Q+ K ++ + + + YR + E+ + Sbjct: 91 PYSEQIKYKQKQVTDNLTRIGKIELPEISPILGSEKTQFYRNKLEYTFSNKRWLTTEEVQ 150 Query: 56 -DDLYHIMFDQQTK------ERMRIDYFMPGSLLINALMIEMMATIRLEPL----LRAK- 103 + +Y M + + I+ + N + + LR Sbjct: 151 QNVVYEQMNAVGFHIPNAFDKVLAIEKCWLQDDISNRIRNAVRDYAYQHNYSFINLRTHE 210 Query: 104 --LFQIDYLTSQSDQAIVTLIYHRLLDDAW---RECAIRLRDALHARKYQIQLIGRA-NK 157 L + TS + + +V LI ++ ++ + D + +I N Sbjct: 211 GMLRNMIVRTSTTGELMVILICKIEKEEEMALFKQMLQYIADTFPEITSLLYIINNKCND 270 Query: 158 TKICL------DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG 211 T L +D++ E + L ++ SF Q N+ + L V G+ G Sbjct: 271 TITDLEVHTFKGKDHIFEEM----EGLRFKVGPKSFYQTNSEQAYN-LYKVARNFAGLTG 325 Query: 212 D--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269 + + +LY G G + +++H +V+ +E ++E A+ N N + N K+ Sbjct: 326 NELVYDLYTGTGTIANFVSKHARQVIGIEYVPEAIEDAKVNAEINGIKNTLFFAGDMKDM 385 Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDS 327 +D R I DPPR+G+ V ++ I+Y+SCNP + Sbjct: 386 LT-----------QDFINQYGRPDVIITDPPRAGMHQDVVDVILFAEPKRIVYVSCNPAT 434 Query: 328 LCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRKP 366 RDL +L + ++ + D FP+T H+E VLL K Sbjct: 435 QARDLQLLDAKYKVKAVQPVDMFPHTHHVENVVLLELKD 473 >gi|95930707|ref|ZP_01313440.1| RNA methyltransferase, TrmA family [Desulfuromonas acetoxidans DSM 684] gi|95133187|gb|EAT14853.1| RNA methyltransferase, TrmA family [Desulfuromonas acetoxidans DSM 684] Length = 467 Score = 240 bits (612), Expect = 3e-61, Method: Composition-based stats. Identities = 85/386 (22%), Positives = 146/386 (37%), Gaps = 42/386 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAF-QVPNLQIF----RSEPIHYRMRAEFHIWHDGD 56 L+ Y QL K + + + + ++ + E YR A+ I Sbjct: 91 GCPLIHLGYRHQLDFKRGMIEDALSHYPTLGHVTVHAVWSSEETFGYRTIAKLAIAKVHG 150 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRL------EPLLRAKLFQI--D 108 ++ + + + + I LIN + + I P+ R L + Sbjct: 151 KARVGLYKRGSHQVLDIGNCPQQHPLINQIAQALREEIEKQDIYVYNPVSRRGLLRYVAI 210 Query: 109 YLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANK--------TKI 160 ++ Q+++A+VTL+ A L+ + Q I + K+ Sbjct: 211 RVSPQANKALVTLVTTERNYREMTHLAKWLKKKVPQIIGVHQNINASTGNVIFGSTTVKV 270 Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELYCG 219 D +D+ + R SF Q N + V A G + ++LYCG Sbjct: 271 IGAGDLIDQ-----VGDIRLRLSPTSFFQVNNRQAARIYAQVQSWADLGPKDTAVDLYCG 325 Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279 G ++ LA +V +EI + ++ A+ N + N + + + E M+RE Sbjct: 326 VGGIAMHLATSGAKVTGIEINEDAIFNAKAAAELNELGNCRFIVGDAGEILHDMQRELSP 385 Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYPH-ILYISCNPDSLCRDLSILS- 336 K V+PPR G + + + Q P ++Y+SCNP SL RDL +L+ Sbjct: 386 ------------LKVAVVNPPRGGCSEEIIATLGQLRPQTLIYVSCNPYSLGRDLHLLTQ 433 Query: 337 TTHTIERLALFDQFPYTRHMECGVLL 362 T+E L D FP T H+E V L Sbjct: 434 QGFTVEELQPVDMFPQTAHVESVVRL 459 >gi|255691623|ref|ZP_05415298.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides finegoldii DSM 17565] gi|260622692|gb|EEX45563.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides finegoldii DSM 17565] Length = 472 Score = 240 bits (612), Expect = 3e-61, Method: Composition-based stats. Identities = 71/399 (17%), Positives = 143/399 (35%), Gaps = 59/399 (14%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFH------------- 50 Y +Q+ K ++ + + ++ YR + EF Sbjct: 91 PYSEQIRYKQKQVEDNLKRIGKIELPEISPILGSAKTEFYRNKLEFTFSNKRWLTSEEVR 150 Query: 51 --IWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----LRAK- 103 + +D + + + I+ + N + + LR + Sbjct: 151 QDVKYDQMNAVGFHIPGAFDKVLAIEKCWLQDDISNRIRNAIRDYAYEHDYSFINLRTQE 210 Query: 104 --LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDA-----------LHARKYQIQ 150 L + TS + + +V +I ++ ++ E +L L+ + Sbjct: 211 GMLRNMIVRTSSTGELMVIVIC-KITEEHEMELFKQLLQFVADSFPEITSLLYIINNKCN 269 Query: 151 LIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ 210 + +D++ E + L ++ SF Q N+ + L V G+ Sbjct: 270 DTINDLDVHVFKGKDHIFEEM----EGLRFKVGPKSFYQTNSEQAYN-LYKVAREFAGLT 324 Query: 211 GD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268 G+ + +LY G G + ++R +V+ +E ++E A+ N N + N K+ Sbjct: 325 GNELVYDLYTGTGTIANFVSRQARQVIGIEYVPEAIEDAKVNAEINDIKNALFYAGDMKD 384 Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPD 326 +D R I DPPR+G+ + ++ I+Y+SCNP Sbjct: 385 MLT-----------QDFINQHGRPDVIITDPPRAGMHQDVIDVILFAEPKRIVYVSCNPA 433 Query: 327 SLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 + RDL +L + ++ + D FP+T H+E VLL + Sbjct: 434 TQARDLQLLDKKYKVKAVQPVDMFPHTHHVENVVLLELR 472 >gi|262406440|ref|ZP_06082989.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides sp. 2_1_22] gi|294643718|ref|ZP_06721518.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides ovatus SD CC 2a] gi|294807326|ref|ZP_06766138.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides xylanisolvens SD CC 1b] gi|262355143|gb|EEZ04234.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides sp. 2_1_22] gi|292640956|gb|EFF59174.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides ovatus SD CC 2a] gi|294445456|gb|EFG14111.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides xylanisolvens SD CC 1b] Length = 472 Score = 240 bits (612), Expect = 3e-61, Method: Composition-based stats. Identities = 71/399 (17%), Positives = 142/399 (35%), Gaps = 59/399 (14%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFH------------- 50 Y +Q+ K ++ + + + YR + EF Sbjct: 91 PYSEQIRYKQKQVEDNLRRIGKIELPEISPILGSDKTEFYRNKLEFTFSNKRWLTNEEVR 150 Query: 51 --IWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----LRAK- 103 + +D + + + I+ + N + + LR + Sbjct: 151 QDVKYDQMNAVGFHIPGAFDKVLAIEKCWLQDDISNRIRNAVRDYAYEHDYSFINLRTQE 210 Query: 104 --LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDA-----------LHARKYQIQ 150 L + TS + + +V +I ++ +D E +L L+ + Sbjct: 211 GMLRNMIIRTSSTGELMVIVIC-KITEDHEMELFKQLLQFVADSFPEITSLLYIINNKCN 269 Query: 151 LIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ 210 + +D++ E + L ++ SF Q N+ + L + G+ Sbjct: 270 DTINDLDVHVFKGKDHIFEEM----EGLRFKVGPKSFYQTNSEQAYN-LYKIARNFAGLT 324 Query: 211 GD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268 G+ + +LY G G + ++R +V+ +E ++E A+ N N + N K+ Sbjct: 325 GNELVYDLYTGTGTIANFVSRQARQVIGIEYVPEAIEDAKVNAEINDIKNAIFYAGDMKD 384 Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPD 326 +D R I DPPR+G+ + ++ I+Y+SCNP Sbjct: 385 MLT-----------QDFINQHGRPDVIITDPPRAGMHQDVIDVILFAEPKRIVYVSCNPA 433 Query: 327 SLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 + RDL +L + ++ + D FP+T H+E VLL + Sbjct: 434 TQARDLQLLDEKYKVKAVQPVDMFPHTHHVENVVLLELR 472 >gi|332664986|ref|YP_004447774.1| RNA methyltransferase, TrmA family [Haliscomenobacter hydrossis DSM 1100] gi|332333800|gb|AEE50901.1| RNA methyltransferase, TrmA family [Haliscomenobacter hydrossis DSM 1100] Length = 470 Score = 240 bits (612), Expect = 3e-61, Method: Composition-based stats. Identities = 67/395 (16%), Positives = 138/395 (34%), Gaps = 51/395 (12%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63 Y QL K + ++ + + P +YR + EF + + Sbjct: 91 DYAAQLRHKAVVVENALIRLGKISVGEWLPILAAESPYYYRNKMEFAFSCKQWLTHEEIN 150 Query: 64 DQQTK--------------ERMRIDYFMPGSLLINALMIEMMATIRLEPL-------LRA 102 +++ + + I + N + + + L Sbjct: 151 SEKSNAADVLGFHPAGGFDKVIDIQHCWLQPDPSNEVRNTVRTIAIAQGLSFYDVKKHEG 210 Query: 103 KLFQIDYLTSQSDQAIVTLIYH-------RLLDDAWRECAIRLRDALHARKYQIQLIGRA 155 L + + + + + + + R + ++ ++ ++ Sbjct: 211 FLRNLMLRITTTGETMALIAFGEDNPDLRRPFLEEVERRLPQITTLVYCINTKMNDTIWD 270 Query: 156 NKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLL 214 + Y +E+L + +R SF Q N ++ + V A ++ Sbjct: 271 LPVHTWSGKGYAEEQLGH----VRFRIGPKSFFQTNTRQGENLYDVVTRFANLQGHENVY 326 Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274 +LY G G+ L +A+ +V+ +E +++ A+ N N V NVK + Sbjct: 327 DLYTGIGSIGLYVAKDCKQVVGIEEVAAAIDDAKINAEVNGVENVKFYVGDVRAILT--- 383 Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDL 332 + + + DPPR+G+ + + M+ P I+Y+SCNP + RDL Sbjct: 384 --------TEFAAQHGKPDLLITDPPRAGMHEDVINMLLELEAPRIVYVSCNPGTQARDL 435 Query: 333 SILSTTHTIERLALFDQFPYTRHMECGVLLVRKPS 367 LST + + ++ D FP+T H+E LL S Sbjct: 436 GRLSTKYQVLKVQPVDMFPHTHHIESVALLELNKS 470 >gi|262273704|ref|ZP_06051517.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Grimontia hollisae CIP 101886] gi|262222119|gb|EEY73431.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Grimontia hollisae CIP 101886] Length = 438 Score = 240 bits (612), Expect = 3e-61, Method: Composition-based stats. Identities = 88/372 (23%), Positives = 155/372 (41%), Gaps = 31/372 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ---IFRSEPIHYRMRAEFHIWHDGDDL 58 L +E Q+ K L Q+M F +L S+P+ YR RA + Sbjct: 90 GCNLQHLSHEAQIEAKQATLSQLMKKFASADLAQDAPVISKPLAYRRRARLSVKVSKQGE 149 Query: 59 YHIMFDQQ-TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQA 117 + F Q+ T + + + S +NAL+ + + + R + I+ + S + + Sbjct: 150 LEMGFRQRSTNDIVTVTDCPVLSTELNALLPGVYSLLDGLR-GRRIIGHIELVDSDAGRV 208 Query: 118 IVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRT 177 ++ R + E RL+ + L + ++ G+T Sbjct: 209 LLV----RAIKLLHDEDISRLKAFAGEHNLVLYLQQEDGEVVRLTGP---QPAYSIGGQT 261 Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLA 236 L + F Q NA IN M+ L + D +L+L+CG GNFSL LA V+ Sbjct: 262 LAFE--PQDFIQVNADINEKMIAQALDWLALDESDKVLDLFCGLGNFSLPLAEKVKAVVG 319 Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSK-EFTQAMRREREFNRLKDIDIHSYRFKTI 295 +E + V A N +N+ N + + + + T + + ++N+ I Sbjct: 320 IEGVEEMVARASQNALSNNQANARFYHANLELDVTGTVWGKEQYNK-------------I 366 Query: 296 FVDPPRSGLDDATVGMVQAY-PHILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYT 353 +DP R+G + + Q+ ++Y+SCNP +L RD +L + + RL + D FP+T Sbjct: 367 LLDPARAGALEVMPYVAQSEAERVVYVSCNPATLARDSQVLLENGYQLVRLGMLDMFPHT 426 Query: 354 RHMECGVLLVRK 365 H+E L VR+ Sbjct: 427 GHLESMALFVRE 438 >gi|160889893|ref|ZP_02070896.1| hypothetical protein BACUNI_02324 [Bacteroides uniformis ATCC 8492] gi|156860885|gb|EDO54316.1| hypothetical protein BACUNI_02324 [Bacteroides uniformis ATCC 8492] Length = 473 Score = 240 bits (612), Expect = 3e-61, Method: Composition-based stats. Identities = 76/399 (19%), Positives = 144/399 (36%), Gaps = 57/399 (14%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFHIWHDG-------- 55 Y +Q+ K ++ + + + YR + E+ + Sbjct: 91 PYSEQIKYKQKQVTDNLTRIGKIELPEISPILGSEKAQFYRNKLEYTFSNKRWLTTEEVQ 150 Query: 56 -DDLYHIMFDQQTK------ERMRIDYFMPGSLLINALMIEMMATIRLEPL----LRAK- 103 + +Y M + + I+ + N + + LR Sbjct: 151 QNVVYEQMNAVGFHIPNAFDKVLAIEKCWLQDDISNCIRNAVRDYAYQHNYSFINLRTHE 210 Query: 104 --LFQIDYLTSQSDQAIVTLIYHRLLDDAW---RECAIRLRDALHARKYQIQLIGRA-NK 157 L + TS + + +V LI ++ ++ + D + +I N Sbjct: 211 GMLRNMIVRTSTTGELMVILICKIEKEEEMALFKQMLQYIADTFPEITSLLYIINNKCND 270 Query: 158 TKICL------DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG 211 T L +D++ E + L ++ SF Q N+ + L V G+ G Sbjct: 271 TITDLEVHTFKGKDHIFEEM----EGLRFKVGPKSFYQTNSEQAYN-LYKVARNFAGLTG 325 Query: 212 D--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269 + + +LY G G + +++H +V+ +E ++E A+ N N + N K+ Sbjct: 326 NELVYDLYTGTGTIANFVSKHARQVIGIEYVPEAIEDAKVNAEINGIKNTLFFAGDMKDM 385 Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDS 327 +D R I DPPR+G+ V ++ I+Y+SCNP + Sbjct: 386 LT-----------QDFINQYGRPDVIITDPPRAGMHQDVVDVILFAEPKRIVYVSCNPAT 434 Query: 328 LCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRKP 366 RDL +L + ++ + D FP+T H+E VLL K Sbjct: 435 QARDLQLLDAKYKVKAVQPVDMFPHTHHVENVVLLELKD 473 >gi|313105817|ref|ZP_07792080.1| putative RNA methyltransferase [Pseudomonas aeruginosa 39016] gi|310878582|gb|EFQ37176.1| putative RNA methyltransferase [Pseudomonas aeruginosa 39016] Length = 450 Score = 240 bits (612), Expect = 3e-61, Method: Composition-based stats. Identities = 88/374 (23%), Positives = 139/374 (37%), Gaps = 36/374 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWHDGDD 57 TL ++ +QLA K L++ + F + YR RA + D Sbjct: 99 GCTLQHLEHGEQLALKQRTLQEQLQRFAGIEPEEWAAPLVGPEFGYRRRARIAVRWDARA 158 Query: 58 LY--HIMFDQQTKERMRIDYFM---PGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTS 112 ++E + D + P I + ++ R + + Sbjct: 159 RRLDVGFRASASQEIVPFDECLVLVPPLQTIARALPALLQDFRKPESIGHVELFHGTAS- 217 Query: 113 QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLT 172 A++ L+D E RL A + Q+ L G + + + L+ Sbjct: 218 ----ALLLRHTTALVD----EDRQRLAAFCSAHQAQLWLQGAEQPLPVEPAAE-LGYSLS 268 Query: 173 VAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHF 231 TL YR F Q NA +N M+ L + +L+L+CG GNFSL LAR Sbjct: 269 DWQLTLAYR--PGDFVQVNAPVNESMIRQALDWLAPTADERVLDLFCGLGNFSLPLARRV 326 Query: 232 DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291 RV+ VE VE A N AN + N + + L + Sbjct: 327 ARVVGVEGVAAMVERAGANALANGLGNAHFFQADLSKA------------LAEAPWAEQG 374 Query: 292 FKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSILS-TTHTIERLALFDQ 349 F + +DPPR G +A M ++Y+SCNP +L RD ++ + ++R + D Sbjct: 375 FTAVLLDPPRDGAFEAVREMSSLGARRVVYVSCNPATLARDAGEMARQGYRLKRAGILDM 434 Query: 350 FPYTRHMECGVLLV 363 FP T H+E L Sbjct: 435 FPQTAHVEAMALFE 448 >gi|229514078|ref|ZP_04403540.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Vibrio cholerae TMA 21] gi|229349259|gb|EEO14216.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Vibrio cholerae TMA 21] Length = 440 Score = 240 bits (612), Expect = 3e-61, Method: Composition-based stats. Identities = 88/373 (23%), Positives = 153/373 (41%), Gaps = 32/373 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFR---SEPIHYRMRAEFHIWHDGD-- 56 L Q+ K L Q+M+ F +L + S+ YR RA + D Sbjct: 90 GCDLQHLDRAGQIHHKQQALSQLMVKFAGQSLALSAPVCSDDQGYRRRARLSLMWDKKTQ 149 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116 L +Q+K + + +NAL+ ++ A + E +L ++ + + + Sbjct: 150 QLQLGFRRKQSKAIVNVTDCPVLEPSLNALLPDLNALLS-EWSQPERLGHVELVKGDNTR 208 Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR-DYVDERLTVAG 175 +V R L + RL D + + L+ A + + Y +E Sbjct: 209 VLVL----RHLGALIEQDQQRLTDFASQNQLTLYLMLEAGELQHVQGEAPYCEET----- 259 Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRV 234 + + F Q N +N HM+ L Q +L+L+CG GNF+L LA+ V Sbjct: 260 -GSRLSFLPSHFIQVNRAVNQHMVVQALNWLEVSPQERVLDLFCGLGNFTLPLAKQAQAV 318 Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294 + VE V+ A +N N +NNV + + ++ + +F Sbjct: 319 VGVEGVDEMVQHATHNAKLNQINNVAFYQANLEQ------------DMTSASWAQQKFAK 366 Query: 295 IFVDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPY 352 + +DP R+G + + ++Y+SCNP +L RD S+LS +E+L + D FP+ Sbjct: 367 VLLDPARAGAEGIVDQLSALGAKRVVYVSCNPATLARDSQSLLSQGFRLEKLGMLDMFPH 426 Query: 353 TRHMECGVLLVRK 365 T H+E L V+K Sbjct: 427 TSHLESMALFVKK 439 >gi|254557749|ref|YP_003064166.1| RNA methyltransferase [Lactobacillus plantarum JDM1] gi|254046676|gb|ACT63469.1| RNA methyltransferase [Lactobacillus plantarum JDM1] Length = 481 Score = 240 bits (612), Expect = 3e-61, Method: Composition-based stats. Identities = 68/385 (17%), Positives = 136/385 (35%), Gaps = 39/385 (10%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQV-------PNLQIFRSEPIHYRMRAEFHIWHDGDD 57 L Y QLA K D +RQ + ++ I + P YR +A+F + Sbjct: 111 LEHLDYPAQLAFKQDLIRQALEKYRPAGYRHYDVRPTIGMTNPYEYRNKAQFQVRLIDGH 170 Query: 58 LYHIMFDQQTKERMRIDYF---MPGSLLINALMIEMMATI--------RLEPLLRAKLFQ 106 + ++ + + + + + MP ++ + ++ + + +++ + + Sbjct: 171 VAAGLYKENSHDLVDLPTCSVQMPATMTVMRQVVAWLEELQVPIYDEEHNSGIVKTIVVR 230 Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD- 165 T + +T + +++ + L +Q I + I D+ Sbjct: 231 EAAATGEIQLVFITNT---PKLPKKHQLLMKIAEKLPMVVSVMQNINAGKTSLIWGDQTT 287 Query: 166 --YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGN 222 +T L++ +F Q N + A L++ Y G G Sbjct: 288 SLAGKPTITEELDGLVFDLSARAFFQLNPQQTKKLYRLAREALNLAPNETLVDAYSGVGT 347 Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282 L LA V ++ +V A N N + N ++ Sbjct: 348 IGLSLADVAKEVRGMDTIPAAVADANANAQRNQITNAHYEVGEAEVLLPQWLA------- 400 Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILSTTHT 340 + + VDPPR+GLD+ + + A ++YISCNP +L +DL L+ + Sbjct: 401 -----SGFAPDAMVVDPPRTGLDNVLIDAILQSAPEKLVYISCNPSTLAQDLQALTRGYQ 455 Query: 341 IERLALFDQFPYTRHMECGVLLVRK 365 ++ + D FP T E V ++ Sbjct: 456 VDYIQSIDMFPQTARCEAVVRFTKR 480 >gi|282880269|ref|ZP_06288985.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella timonensis CRIS 5C-B1] gi|281305864|gb|EFA97908.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella timonensis CRIS 5C-B1] Length = 472 Score = 240 bits (612), Expect = 3e-61, Method: Composition-based stats. Identities = 82/400 (20%), Positives = 145/400 (36%), Gaps = 61/400 (15%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPNLQIFRS-----EPIHYRMRAEF-------------- 49 YE QL K ++ + +L FR + YR + EF Sbjct: 91 PYEDQLKAKQKQVHDQLTRIGKVDLPDFRPILGSEKIYEYRNKLEFSCSNKRWLTKEEVS 150 Query: 50 ---HIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL------- 99 + H +HI + I+ L N + E+ + Sbjct: 151 SGVQLDHKNAIGFHITGAFD--KIYPIEKCWLMDDLCNQIRNEIRNYALNNGISFFDVKE 208 Query: 100 LRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTK 159 L I S + + +V L+ + + + A L + R QI + N K Sbjct: 209 QTGLLRDIMIRNSSTGEWMV-LVQFKFQEQGDEQRAHDLLQHIGDRFPQITSLLYVNNQK 267 Query: 160 -----------ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKG 208 + +D++ E + L ++ SF Q N H+ E + Sbjct: 268 CNDTFSDQTIEVFKGKDHITEMM----DKLQFKVAAKSFYQTNTQQAFHLYEVARQLAQL 323 Query: 209 IQGDLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267 +L+ +LY G G + +ARH +V+ +E + ++ A+ N N + N K Sbjct: 324 TGKELVYDLYTGTGTIANFVARHAQQVIGIEYVEDAIADAKANSKCNGIENTLFYAGDMK 383 Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNP 325 + + + I DPPR+G+ + + A I+Y+SCNP Sbjct: 384 DILTD-----------EFVKQHGKPDVIITDPPRAGMHPDVIQTILRAAPKRIVYVSCNP 432 Query: 326 DSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 + RDL +L+ + +E + D FP+T H+E VLL ++ Sbjct: 433 ATQARDLEVLNEQYRVEEVQPVDMFPHTPHVENVVLLEQR 472 >gi|283769200|ref|ZP_06342104.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bulleidia extructa W1219] gi|283104176|gb|EFC05555.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bulleidia extructa W1219] Length = 442 Score = 239 bits (611), Expect = 4e-61, Method: Composition-based stats. Identities = 72/379 (18%), Positives = 146/379 (38%), Gaps = 33/379 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVP----NLQIFRSEPIHYRMRAEFHIWHDGDD 57 L Y++QL+ K + ++ L Q+ + + + YR + + I Sbjct: 79 GCQLQHMAYQEQLSLKQEIVQIHFLRHQLDLNRIHPILPSPKQERYRNKVQVPIQEKDGL 138 Query: 58 LYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQA 117 + + + + + M + N + + + L + Q ++ Sbjct: 139 AQLGFYRNHSHDVVVYEDCMVETEESNQITHFVKRFLNQHHLTSNFRYLFIRHIHQRNEV 198 Query: 118 IVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD--------YVDE 169 +V I + ++ A+ L + +T + LD +++E Sbjct: 199 MVMPIVREYPFEKSKKLALELVKEFPNI-TSFSYLKNPKETNVILDGPIFEVIGPLFLEE 257 Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNFSLVLA 228 L + ++ SF Q N + L A + +++LYCG G ++ A Sbjct: 258 SLL----GMNFQLSAKSFFQVNPYATEVLYVKALELADISKEDTVVDLYCGTGTIGILAA 313 Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288 + +V+ +EI +++ A+ N N +N++ M +++ + + +E Sbjct: 314 KIAKKVIGIEIVPEAIDNAKANAQLNCQDNLEFWCMDAQDGAKKIVETKE---------- 363 Query: 289 SYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILST-THTIERLA 345 + VDPPR G T+ +Q ++YISC+P +L RDL L + +E + Sbjct: 364 --SIDVVIVDPPRKGCSLETLQAIQKMEPKKMVYISCDPSTLARDLEFLQSMGFKVETVQ 421 Query: 346 LFDQFPYTRHMECGVLLVR 364 D FP T H+EC L+ R Sbjct: 422 PVDLFPQTVHVECIALIQR 440 >gi|15832899|ref|NP_311672.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia coli O157:H7 str. Sakai] gi|13363116|dbj|BAB37068.1| putative enzyme [Escherichia coli O157:H7 str. Sakai] Length = 433 Score = 239 bits (611), Expect = 4e-61, Method: Composition-based stats. Identities = 85/368 (23%), Positives = 142/368 (38%), Gaps = 30/368 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWH--DGDDLY 59 S + Q K L ++M + ++ P YR RA + + L Sbjct: 89 SCQQQHASVDLQQRSKSAALARLM---KHEVSEVIADVPWGYRRRARLSLNYLPKTQQLQ 145 Query: 60 HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119 + + + + + AL+ ++ A + +R L ++ + + S ++ Sbjct: 146 MGFRKAGSSDIVDVKQCPILVPQLEALLPKVRACLGSLQAMRH-LGHVELVQATSGTLMI 204 Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179 L + L A RE R H+ + L + + E L Sbjct: 205 -LRHTAPLSSADREKLERFS---HSEGLDLYLAPDSEILETVSG-----EMPWYDSNGLR 255 Query: 180 YRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVE 238 F Q NAG+N M+ L + +L+L+CG GNF+L LA V+ VE Sbjct: 256 LTFSPRDFIQVNAGVNQKMVARALEWLEVEPEDRVLDLFCGMGNFTLPLATQAASVVGVE 315 Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298 VE + N N + NV + +E + F + +D Sbjct: 316 GVPALVEKGQQNARLNCLQNVTFYHENLEE------------DVTKQPWAKNGFDKVLLD 363 Query: 299 PPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHM 356 P R+G +++ P I+Y+SCNP +L RD ++L +TI RLA+ D FP+T H+ Sbjct: 364 PARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHL 423 Query: 357 ECGVLLVR 364 E VL R Sbjct: 424 ESMVLFSR 431 >gi|189424927|ref|YP_001952104.1| RNA methyltransferase, TrmA family [Geobacter lovleyi SZ] gi|189421186|gb|ACD95584.1| RNA methyltransferase, TrmA family [Geobacter lovleyi SZ] Length = 485 Score = 239 bits (611), Expect = 4e-61, Method: Composition-based stats. Identities = 81/388 (20%), Positives = 146/388 (37%), Gaps = 38/388 (9%) Query: 1 MSGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFR-----SEPIHYRMRAEFHIWHDG 55 + L+ +Y +QL K D ++ + + + YR A+ + Sbjct: 108 LGCPLIAMRYGEQLRWKQDLVQAAFNQYPSLKHIVVPRLLTPERRLGYRTTAKLAVAGTH 167 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGSLLIN-----------ALMIEMMATIRLEPLLRAKL 104 D Y ++ + + + + ++ +IN L + + +LR + Sbjct: 168 ADPYIGIYRRASHDVVDLEDCPLHHPMINTVIRVVREGIRKLKVPVYQEKNKSGILRYLV 227 Query: 105 FQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR 164 ++ + S++ +VT + R + A L++ + Q + + I Sbjct: 228 VRV---SESSNEVMVTFVTARRAFNEIHHLARFLQEKVPQVAVVCQNVNSSEGNVIFGAH 284 Query: 165 DYV---DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATK-GIQGDLLELYCGN 220 D+ + + + SF Q + E +L+LYCG Sbjct: 285 DHFLTRQQTIQERIGQVELLVSPRSFLQAQNDGARLLYETARDWAGLDGSQQVLDLYCGI 344 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G +L LA +VL VE+ K +V A+ N N+ N + Sbjct: 345 GGIALTLAPVARQVLGVELNKEAVADAKRNARLNNARNCRFEAGDV------------LE 392 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILS-T 337 L D+ RF I ++PPR G D + V A I+Y+SC+P +L RDL IL+ Sbjct: 393 LLDDLLEDELRFSCIVLNPPRKGCDREVLDKVAEFAPERIVYVSCSPQTLARDLDILATK 452 Query: 338 THTIERLALFDQFPYTRHMECGVLLVRK 365 E++ + FP T H+E LL+RK Sbjct: 453 GFHCEKVQPVEMFPQTPHVENVALLLRK 480 >gi|15803306|ref|NP_289339.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia coli O157:H7 EDL933] gi|168750996|ref|ZP_02776018.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli O157:H7 str. EC4113] gi|168758476|ref|ZP_02783483.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli O157:H7 str. EC4401] gi|168764498|ref|ZP_02789505.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli O157:H7 str. EC4501] gi|168766753|ref|ZP_02791760.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli O157:H7 str. EC4486] gi|168778773|ref|ZP_02803780.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli O157:H7 str. EC4076] gi|168788043|ref|ZP_02813050.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli O157:H7 str. EC869] gi|168802534|ref|ZP_02827541.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli O157:H7 str. EC508] gi|195936387|ref|ZP_03081769.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia coli O157:H7 str. EC4024] gi|208809717|ref|ZP_03252054.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli O157:H7 str. EC4206] gi|208813103|ref|ZP_03254432.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli O157:H7 str. EC4045] gi|208820580|ref|ZP_03260900.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli O157:H7 str. EC4042] gi|209399664|ref|YP_002272250.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli O157:H7 str. EC4115] gi|217326646|ref|ZP_03442729.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli O157:H7 str. TW14588] gi|254794727|ref|YP_003079564.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia coli O157:H7 str. TW14359] gi|261226084|ref|ZP_05940365.1| 23S rRNA (uracil-5)-methyltransferase [Escherichia coli O157:H7 str. FRIK2000] gi|261256661|ref|ZP_05949194.1| 23S rRNA (uracil-5)-methyltransferase [Escherichia coli O157:H7 str. FRIK966] gi|291284114|ref|YP_003500932.1| 23S rRNA (uracil-5-)-methyltransferase rumA (23S rRNA(M- 5-U1939)-methyltransferase) [Escherichia coli O55:H7 str. CB9615] gi|20140032|sp|Q8XED8|RUMA_ECO57 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|12517257|gb|AAG57898.1|AE005506_6 putative enzyme [Escherichia coli O157:H7 str. EDL933] gi|188014871|gb|EDU52993.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli O157:H7 str. EC4113] gi|189003420|gb|EDU72406.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli O157:H7 str. EC4076] gi|189354711|gb|EDU73130.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli O157:H7 str. EC4401] gi|189363623|gb|EDU82042.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli O157:H7 str. EC4486] gi|189365488|gb|EDU83904.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli O157:H7 str. EC4501] gi|189372225|gb|EDU90641.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli O157:H7 str. EC869] gi|189375496|gb|EDU93912.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli O157:H7 str. EC508] gi|208729518|gb|EDZ79119.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli O157:H7 str. EC4206] gi|208734380|gb|EDZ83067.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli O157:H7 str. EC4045] gi|208740703|gb|EDZ88385.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli O157:H7 str. EC4042] gi|209161064|gb|ACI38497.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli O157:H7 str. EC4115] gi|209761438|gb|ACI79031.1| putative enzyme [Escherichia coli] gi|209761440|gb|ACI79032.1| putative enzyme [Escherichia coli] gi|209761442|gb|ACI79033.1| putative enzyme [Escherichia coli] gi|209761444|gb|ACI79034.1| putative enzyme [Escherichia coli] gi|209761446|gb|ACI79035.1| putative enzyme [Escherichia coli] gi|217319013|gb|EEC27438.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli O157:H7 str. TW14588] gi|254594127|gb|ACT73488.1| 23S rRNA (uracil-5)-methyltransferase [Escherichia coli O157:H7 str. TW14359] gi|290763987|gb|ADD57948.1| 23S rRNA (uracil-5-)-methyltransferase rumA (23S rRNA(M- 5-U1939)-methyltransferase) [Escherichia coli O55:H7 str. CB9615] gi|320189118|gb|EFW63777.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia coli O157:H7 str. EC1212] gi|320640433|gb|EFX09972.1| 23S rRNA m(5)U1939 methyltransferase [Escherichia coli O157:H7 str. G5101] gi|320645680|gb|EFX14665.1| 23S rRNA m(5)U1939 methyltransferase [Escherichia coli O157:H- str. 493-89] gi|320650980|gb|EFX19420.1| 23S rRNA m(5)U1939 methyltransferase [Escherichia coli O157:H- str. H 2687] gi|320656476|gb|EFX24372.1| 23S rRNA m(5)U1939 methyltransferase [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320662372|gb|EFX29769.1| 23S rRNA m(5)U1939 methyltransferase [Escherichia coli O55:H7 str. USDA 5905] gi|320667070|gb|EFX34033.1| 23S rRNA m(5)U1939 methyltransferase [Escherichia coli O157:H7 str. LSU-61] gi|326339143|gb|EGD62958.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia coli O157:H7 str. 1044] gi|326342974|gb|EGD66742.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia coli O157:H7 str. 1125] Length = 433 Score = 239 bits (611), Expect = 4e-61, Method: Composition-based stats. Identities = 84/368 (22%), Positives = 141/368 (38%), Gaps = 30/368 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWH--DGDDLY 59 + Q K L ++M + ++ P YR RA + + L Sbjct: 89 GCQQQHASVDLQQRSKSAALARLM---KHEVSEVIADVPWGYRRRARLSLNYLPKTQQLQ 145 Query: 60 HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119 + + + + + AL+ ++ A + +R L ++ + + S ++ Sbjct: 146 MGFRKAGSSDIVDVKQCPILVPQLEALLPKVRACLGSLQAMRH-LGHVELVQATSGTLMI 204 Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179 L + L A RE R H+ + L + + E L Sbjct: 205 -LRHTAPLSSADREKLERFS---HSEGLDLYLAPDSEILETVSG-----EMPWYDSNGLR 255 Query: 180 YRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVE 238 F Q NAG+N M+ L + +L+L+CG GNF+L LA V+ VE Sbjct: 256 LTFSPRDFIQVNAGVNQKMVARALEWLEVEPEDRVLDLFCGMGNFTLPLATQAASVVGVE 315 Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298 VE + N N + NV + +E + F + +D Sbjct: 316 GVPALVEKGQQNARLNCLQNVTFYHENLEE------------DVTKQPWAKNGFDKVLLD 363 Query: 299 PPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHM 356 P R+G +++ P I+Y+SCNP +L RD ++L +TI RLA+ D FP+T H+ Sbjct: 364 PARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHL 423 Query: 357 ECGVLLVR 364 E VL R Sbjct: 424 ESMVLFSR 431 >gi|326804225|ref|YP_004322043.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Aerococcus urinae ACS-120-V-Col10a] gi|326650285|gb|AEA00468.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Aerococcus urinae ACS-120-V-Col10a] Length = 465 Score = 239 bits (611), Expect = 4e-61, Method: Composition-based stats. Identities = 88/388 (22%), Positives = 154/388 (39%), Gaps = 40/388 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIF----RSEPIHYRMRAEFHIWHDGDD 57 L Y QLA K + + + +P HYR + E +GD Sbjct: 93 GAPLEYMNYADQLAYKRALTQGFLADQGFDPSLVGEVWGMDDPYHYRNKLELSFSINGDL 152 Query: 58 LYHIMFDQQT-----KERMRIDYFMPGSLLINALMIEM-MATIRLEPLLRAKLFQIDYLT 111 + + DQ K + + FM + A +A + + Sbjct: 153 GFFVQGDQYQIVDWQKNILAPEIFMILKEEVQAWQKAWNLAGYEKQSKQGLLRQLLLRQG 212 Query: 112 SQSDQAIVTLIYHR---LLDDAWRECAIRLRDALHARKYQIQLIGRA-------NKTKIC 161 QS + +V + LD E I+ A K + + A ++ ++ Sbjct: 213 HQSGEVMVAIFAQEEAAKLDPGVIEDLIQRMQAYPEIKSLMWIKNTAIADRMGADQVEVL 272 Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGN 220 RDY+ + L YR ++F QPN M++ Q +++L+CG Sbjct: 273 AGRDYICDELA----GFNYRLYFDTFFQPNPVQAQRMIDLACDWADLDQDSLVIDLFCGV 328 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G FSL LA+ ++ +EI + S+E+A+ N N + N + ++ Sbjct: 329 GTFSLPLAKRAKALVGIEIVEQSIESAKRNARDNGIENAHFIARDARH------------ 376 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST- 337 L +I+ + + +DPPR+G + + I+Y+SCNP +L +DL+ L Sbjct: 377 GLAEIEAEWGQADLLLLDPPRNGAGGKIMRRIGRLGLEKIIYVSCNPKTLAQDLAWLRDF 436 Query: 338 THTIERLALFDQFPYTRHMECGVLLVRK 365 + I + L DQFP+T+H+E VL+ +K Sbjct: 437 GYEISKFQLVDQFPHTQHVEAVVLIEKK 464 >gi|323966763|gb|EGB62194.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli M863] gi|327251523|gb|EGE63209.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli STEC_7v] Length = 433 Score = 239 bits (611), Expect = 4e-61, Method: Composition-based stats. Identities = 84/357 (23%), Positives = 141/357 (39%), Gaps = 30/357 (8%) Query: 13 QLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWH--DGDDLYHIMFDQQTKER 70 Q K L ++M + ++ P YR RA + + L + + Sbjct: 100 QQRSKSAALARLM---KHEVSEVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDI 156 Query: 71 MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDA 130 + + + AL+ ++ A + +R L ++ + + S ++ L + L A Sbjct: 157 VDVKQCPILVPQLEALLPKVRACLGSLQAMRH-LGHVELVQATSGTLMI-LRHTASLSSA 214 Query: 131 WRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQP 190 RE R H+ + L + + E L F Q Sbjct: 215 DREKLERFS---HSEGLDLYLAPDSEILETVSG-----EMPWYESNGLRLTFSPRDFIQV 266 Query: 191 NAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249 NAG+N M+ L + +L+L+CG GNF+L LA V+ VE VE + Sbjct: 267 NAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQ 326 Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309 N N ++NV + +E + F + +DP R+G Sbjct: 327 NARLNGLHNVTFYHENLEE------------DVTKQPWAKNGFDKVLLDPARAGAAGVMQ 374 Query: 310 GMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 +++ P I+Y+SCNP +L RD ++L +TI RLA+ D FP+T H+E VL R Sbjct: 375 QIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSR 431 >gi|311278256|ref|YP_003940487.1| RNA methyltransferase, TrmA family [Enterobacter cloacae SCF1] gi|308747451|gb|ADO47203.1| RNA methyltransferase, TrmA family [Enterobacter cloacae SCF1] Length = 433 Score = 239 bits (611), Expect = 4e-61, Method: Composition-based stats. Identities = 84/358 (23%), Positives = 147/358 (41%), Gaps = 29/358 (8%) Query: 13 QLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTK--ER 70 Q K L ++M + ++ +EP YR RA + + M ++ + Sbjct: 100 QQRSKQAALARLM---KHDVDEVIAAEPWGYRRRARLSLSYQPKSQQLQMGFRKANAADI 156 Query: 71 MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDA 130 + I + AL+ + + R L ++ + + + +V + H A Sbjct: 157 IDIVQCPVLVPALEALLPAVRECLSGLKA-RQHLGHVELVLADNGPLMV--LRHTAALPA 213 Query: 131 WRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQP 190 +L H+ + + L ++ L+R ++ + L F Q Sbjct: 214 T--DREKLEQFSHSHQLALYLAPQSE----VLERVSGEDAPWYSADGLRLTFSPRDFIQV 267 Query: 191 NAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249 N G+N M+ + D +L+L+CG GNF+L LAR V+ VE VE A+ Sbjct: 268 NDGVNQKMVATAIDWLDIQPDDRVLDLFCGMGNFTLPLARRAASVVGVEGVPALVEKAQQ 327 Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309 N A N ++NV + +E F I +DP R+G Sbjct: 328 NAARNGLHNVTFFHENLEEDVTRQA------------WAKNGFDKILLDPARAGASGVMQ 375 Query: 310 GMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 +V+ P ++Y+SCNP +L RD ++L+ + I+R+A+ D FP+T H+E VL K Sbjct: 376 HVVKLAPRRVVYVSCNPATLARDSEALLAAGYQIQRMAMLDMFPHTGHLESIVLFEHK 433 >gi|86146353|ref|ZP_01064677.1| 23S rRNA (uracil-5-)-methyltransferase [Vibrio sp. MED222] gi|85835832|gb|EAQ53966.1| 23S rRNA (uracil-5-)-methyltransferase [Vibrio sp. MED222] Length = 439 Score = 239 bits (611), Expect = 4e-61, Method: Composition-based stats. Identities = 78/371 (21%), Positives = 145/371 (39%), Gaps = 30/371 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRS---EPIHYRMRAEFHIWHDGD-- 56 L Y Q+ K L +M +Q N ++ + + YR RA ++ D Sbjct: 90 GCHLQHLGYSSQVEHKSQSLTHLMSKYQTANTEVAQPIVGDDTGYRRRARISLFVDKKTQ 149 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116 L +Q+K+ I +N L+ ++ + + L L ++ + + Sbjct: 150 QLQFGFRKKQSKQIENITDCAVLDPRLNVLLPKLKSLLNTFSSL-TSLGHVELVLGDTGP 208 Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGR 176 +V R L + L + + +K + + G Sbjct: 209 VMVL----RHLKPLVEKDEQALMTLAKEEGATLYSMPETDKLVRLVGDS---PSYSETGV 261 Query: 177 TLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVL 235 TL + N F Q N +N M+ + + + +L+L+CG GNFSL +A+ V+ Sbjct: 262 TLPFE--PNHFIQVNQKVNQQMVAQAIEWLEPQADERVLDLFCGLGNFSLPIAQQSAFVV 319 Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295 VE V+ A N A N ++N + + + +E + +E +F + Sbjct: 320 GVEGVDEMVQQATANAALNQLSNTEFYQANLEEDLSSQLWAKE------------KFDKV 367 Query: 296 FVDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYT 353 +DP R+G + ++Y+SCNP +L RD L + + +L + D FP+T Sbjct: 368 LLDPARAGASGIVDQISALGAKRVVYVSCNPATLARDSESLEKQGYQLAKLGMLDMFPHT 427 Query: 354 RHMECGVLLVR 364 H+E L ++ Sbjct: 428 SHLESMALFIK 438 >gi|218710562|ref|YP_002418183.1| 23S rRNA 5-methyluridine methyltransferase [Vibrio splendidus LGP32] gi|254766924|sp|B7VK72|RUMA_VIBSL RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|218323581|emb|CAV19816.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Vibrio splendidus LGP32] Length = 442 Score = 239 bits (611), Expect = 4e-61, Method: Composition-based stats. Identities = 77/371 (20%), Positives = 147/371 (39%), Gaps = 27/371 (7%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI---FRSEPIHYRMRAEFHIWHDGDDL 58 L Y Q+ K L +M +Q N ++ + YR RA ++ D Sbjct: 90 GCHLQHLGYSSQVEHKSQSLTHLMSKYQTANTEVALPIVGDESGYRRRARISLFVDKKTQ 149 Query: 59 Y--HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116 +Q+K+ I +N L+ ++ + + L L ++ + + Sbjct: 150 LLQFGFRKKQSKQIENITDCAVLDPRLNVLLPKLKSLLNTFSSL-TSLGHVELVLGDTGP 208 Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGR 176 +V L + + L + + + L + + +K + + G Sbjct: 209 VMV-LRHLKPLVEKDEQALMTLMTLAKEEGATLYSMPETDKLVRLVGDA---PSYSETGV 264 Query: 177 TLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVL 235 TL + N F Q N +N M+ + + + +L+L+CG GNFSL +A+ V+ Sbjct: 265 TLPFE--PNHFIQVNQKVNQQMVAQAIEWLEPQADERVLDLFCGLGNFSLPIAQQSAFVV 322 Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295 VE V+ A N A N ++N + + + +E + +E +F + Sbjct: 323 GVEGVDEMVQQATANAALNQLSNTEFYQANLEEDLSSQLWAKE------------KFDKV 370 Query: 296 FVDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYT 353 +DP R+G + ++Y+SCNP +L RD L + + +L + D FP+T Sbjct: 371 LLDPARAGASGIVDQISALGAKRVVYVSCNPATLARDSESLEKQGYQLAKLGMLDMFPHT 430 Query: 354 RHMECGVLLVR 364 H+E L ++ Sbjct: 431 SHLESMALFIK 441 >gi|15642448|ref|NP_232081.1| 23S rRNA 5-methyluridine methyltransferase [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121591386|ref|ZP_01678669.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio cholerae 2740-80] gi|153819816|ref|ZP_01972483.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio cholerae NCTC 8457] gi|227082573|ref|YP_002811124.1| putative RNA methyltransferase,TrmA family [Vibrio cholerae M66-2] gi|229507488|ref|ZP_04396993.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Vibrio cholerae BX 330286] gi|229512317|ref|ZP_04401796.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Vibrio cholerae B33] gi|229519453|ref|ZP_04408896.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Vibrio cholerae RC9] gi|229606993|ref|YP_002877641.1| 23S rRNA 5-methyluridine methyltransferase [Vibrio cholerae MJ-1236] gi|254849576|ref|ZP_05238926.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Vibrio cholerae MO10] gi|255746877|ref|ZP_05420822.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Vibrio cholera CIRS 101] gi|262162042|ref|ZP_06031058.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Vibrio cholerae INDRE 91/1] gi|298500191|ref|ZP_07009996.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio cholerae MAK 757] gi|20140289|sp|Q9KPC1|RUMA_VIBCH RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|254766923|sp|C3LQZ5|RUMA_VIBCM RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|9657029|gb|AAF95594.1| TrmA family RNA methyltransferase, putative [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121546765|gb|EAX56937.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio cholerae 2740-80] gi|126509635|gb|EAZ72229.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio cholerae NCTC 8457] gi|227010461|gb|ACP06673.1| putative RNA methyltransferase,TrmA family [Vibrio cholerae M66-2] gi|229344142|gb|EEO09117.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Vibrio cholerae RC9] gi|229352282|gb|EEO17223.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Vibrio cholerae B33] gi|229354993|gb|EEO19914.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Vibrio cholerae BX 330286] gi|229369648|gb|ACQ60071.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Vibrio cholerae MJ-1236] gi|254845281|gb|EET23695.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Vibrio cholerae MO10] gi|255735279|gb|EET90679.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Vibrio cholera CIRS 101] gi|262028291|gb|EEY46948.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Vibrio cholerae INDRE 91/1] gi|297540884|gb|EFH76938.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio cholerae MAK 757] Length = 440 Score = 239 bits (611), Expect = 4e-61, Method: Composition-based stats. Identities = 88/373 (23%), Positives = 154/373 (41%), Gaps = 32/373 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFR---SEPIHYRMRAEFHIWHDGD-- 56 L Q+ K L Q+M+ F +L + S+ YR RA + D Sbjct: 90 GCDLQHLDRAGQIHHKQQALSQLMVKFAGQSLALSAPVCSDDQGYRRRARLSLMWDKKTQ 149 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116 L +Q+K + + + +NAL+ ++ A + E +L ++ + + + Sbjct: 150 QLQLGFRRKQSKAIVNVTHCPVLEPSLNALLPDLNALLS-EWSQPERLGHVELVKGDNTR 208 Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR-DYVDERLTVAG 175 +V R L + RL D + + L+ A + + Y +E Sbjct: 209 VLVL----RHLGALIEQDQQRLTDFASQNQLTLYLMLEAGELQHVQGEAPYCEET----- 259 Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRV 234 + + F Q N +N HM+ L Q +L+L+CG GNF+L LA+ V Sbjct: 260 -GSRLSFLPSHFIQVNRAVNQHMVVQALNWLEVSPQERVLDLFCGLGNFTLPLAKQAQAV 318 Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294 + VE V+ A +N N +NNV + + ++ + +F Sbjct: 319 VGVEGVDEMVQHATHNAKLNQINNVAFYQANLEQ------------DMTSASWAQQKFAK 366 Query: 295 IFVDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPY 352 + +DP R+G + + ++Y+SCNP +L RD S+LS +E+L + D FP+ Sbjct: 367 VLLDPARAGAEGIVDQLSALGAKRVVYVSCNPATLARDSQSLLSQGFRLEKLGMLDMFPH 426 Query: 353 TRHMECGVLLVRK 365 T H+E L V+K Sbjct: 427 TSHLESMALFVKK 439 >gi|189485521|ref|YP_001956462.1| putative RNA methyltransferase [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|170287480|dbj|BAG14001.1| putative RNA methyltransferase [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 449 Score = 239 bits (611), Expect = 4e-61, Method: Composition-based stats. Identities = 75/383 (19%), Positives = 139/383 (36%), Gaps = 36/383 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEP-IHYRMRAEFHIWHDGDDLYH 60 + YE Q+ K + + +++ V +I S HYR + EF +++ Sbjct: 81 GCSFQNISYESQIKYKQEYISELLNFAGVKISKILISPQIWHYRNKMEFSFFNNKGIADL 140 Query: 61 IMFDQQT-KERMRIDYFMPGSLLINALMIEMMATIRLEP------LLRAKLFQIDYLTSQ 113 + + + + ++ + F+ L Sbjct: 141 GLHCKGMFNRYVSVPPCFIADKGFLQVVETVKRFANGNNFSVYNNKTHEGFFRHLVLRKA 200 Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL--------DRD 165 + + + D L L I K+ L + Sbjct: 201 GNNNQFLINVITNVVDCESVFLEPLIKELSEFSCSIYWTSNGRKSDAVLADRLTLMCGKP 260 Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFS 224 ++ ERL + G+ + SF Q N+ + +L + +L +LYCG G Sbjct: 261 FITERLNIGGKDYFFDISPFSFFQTNSKATEILYTEILRLLNPSKYTVLLDLYCGTGAIG 320 Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284 + +A + RV+ VE +++ A+ N AN+V N + ++++ + + Sbjct: 321 ISMAHNVKRVIGVECIGQAIDNAKENALANNVFNAEFYASDAEDWIKENKS--------- 371 Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST--THT 340 F + VDPPRSGL + + I+Y+SCNP +L RDL +++ Sbjct: 372 ------CFDAVVVDPPRSGLTKDIIKFLLESKAKRIIYVSCNPSTLARDLQLITENSKCK 425 Query: 341 IERLALFDQFPYTRHMECGVLLV 363 I+ + D FP T H+E VLL Sbjct: 426 IKEIIPVDMFPQTYHIETVVLLE 448 >gi|289422763|ref|ZP_06424602.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Peptostreptococcus anaerobius 653-L] gi|289156818|gb|EFD05444.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Peptostreptococcus anaerobius 653-L] Length = 452 Score = 239 bits (610), Expect = 5e-61, Method: Composition-based stats. Identities = 79/393 (20%), Positives = 146/393 (37%), Gaps = 48/393 (12%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPI----HYRMRAEFHI---WHD 54 ++L YE+QL K D++ + + + P YR + E+ + D Sbjct: 79 GCSILSIPYEKQLEIKKDQVLDLFDKAGLKEYEFVGINPSPSSVAYRNKMEYTFGDEYKD 138 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMA-----------TIRLEPLLRAK 103 G + + + + +D +M + + LR Sbjct: 139 GPLSLGMHKVGRFIDIVTVDDCRIVDQDFKTIMTRTRDFFEEKGLPYYRSFNHQGYLRHL 198 Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAI------RLRDALHARKYQIQLIGRANK 157 + + T + IVT D ++E + L LH + + ++ Sbjct: 199 VVRKGENTGELMVNIVTSSQLDYNMDEYKEFLLGLDLDSELVGVLHTINDGLADAVQCDE 258 Query: 158 TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML--EWVLAATKGIQGDLLE 215 +I RDY E + L ++ SF Q N + A +G + + Sbjct: 259 MRILYGRDYFYEEVL----GLRFKVSPFSFFQTNTKGAEALYTIARKFAGDRGHGKVVFD 314 Query: 216 LYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275 LY G G ++A+ +V +E+ + +V AA N N+++N + + + ++ Sbjct: 315 LYSGTGTIGQLMAKTAKKVYGIELVEEAVVAANQNAVLNNLDNCEFIAGDVAKVVSSL-- 372 Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLS 333 + + I VDPPR+G+ V + I+Y+SCNP SL ++ Sbjct: 373 -------------PEKPELIIVDPPRAGILGNGVKDIAEFGAKEIVYVSCNPRSLVENVV 419 Query: 334 ILS-TTHTIERLALFDQFPYTRHMECGVLLVRK 365 + +++L L D FP T H E VL+ RK Sbjct: 420 EFEDRGYKLDKLELMDLFPNTPHCESVVLMTRK 452 >gi|288925116|ref|ZP_06419052.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella buccae D17] gi|288338306|gb|EFC76656.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella buccae D17] Length = 480 Score = 239 bits (610), Expect = 5e-61, Method: Composition-based stats. Identities = 75/398 (18%), Positives = 143/398 (35%), Gaps = 57/398 (14%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPNLQIFRS-----EPIHYRMRAEFHIWHDG-------- 55 Y++Q+ K ++ + L FR + YR + EF + Sbjct: 99 PYQEQIKAKQQQVYDQLSRIGKVELPEFRPIMGSVKTQEYRNKIEFGCSNKRWLTKEEVA 158 Query: 56 -DDLYHIMFDQQTK------ERMRIDYFMPGSLLINALMIEMMATIRLEPL-------LR 101 + M + I+ L N + + + Sbjct: 159 SGTEFTNMNAIGFHITGAFDKIYPIEKCGLMDNLNNRIRNAIRDFAFATEISFYDIRQQH 218 Query: 102 AKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTK-- 159 L + S + + +V + +H ++ A+ L + + +I + + K Sbjct: 219 GLLRDVMIRNSNTGEWMVLVQFHYD-EEGDEAKALALLQHIGDKFPEITSLLYVDNQKCN 277 Query: 160 ---------ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ 210 + D++ E + L ++ SF Q N H+ ++ Sbjct: 278 DTFGDLPISVYKGNDHIFEVM----EGLRFKVGPKSFYQTNTEQAYHLYSVAREFSQLTG 333 Query: 211 GDLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269 +L+ +LY G G + +AR +V+ +E ++E A+ N N ++N K+ Sbjct: 334 DELVYDLYTGTGTIANFVAREAKQVIGIEYVPEAIEDAKVNSEINGIDNTLFYAGDMKDI 393 Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDS 327 + R I DPPR+G+ V + A I+Y+SCNP + Sbjct: 394 LND-----------EFIRQHGRPDVIITDPPRAGMHADVVNTILHAAPRRIVYVSCNPAT 442 Query: 328 LCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 RDL++L + +E + D FP+T H+E VLL+R+ Sbjct: 443 QARDLNLLDVDYRVEEVQPVDMFPHTPHVENVVLLIRR 480 >gi|323978604|gb|EGB73686.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli TW10509] Length = 433 Score = 239 bits (610), Expect = 5e-61, Method: Composition-based stats. Identities = 84/357 (23%), Positives = 141/357 (39%), Gaps = 30/357 (8%) Query: 13 QLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWH--DGDDLYHIMFDQQTKER 70 Q K L ++M + ++ P YR RA + + L + + Sbjct: 100 QQRSKSAALARLM---KHEVSEVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDI 156 Query: 71 MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDA 130 + + + AL+ ++ A + +R L ++ + + S ++ L + L A Sbjct: 157 VDVKQCPILVPQLEALLPKVRACLGSLQAMRH-LGHVELVQATSGTLMI-LRHTAPLSSA 214 Query: 131 WRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQP 190 RE R H+ + L + + E L F Q Sbjct: 215 DREKLERFS---HSEGLDLYLAPDSEILETVSG-----EMPWYDSNGLRLTFSPRDFIQV 266 Query: 191 NAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249 NAG+N M+ L + +L+L+CG GNF+L LA V+ VE VE + Sbjct: 267 NAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQ 326 Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309 N N ++NV + +E + F + +DP R+G Sbjct: 327 NARLNSLHNVTFYHENLEE------------DVTKQPWAKNGFDKVLLDPARAGAAGVMQ 374 Query: 310 GMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 +++ P I+Y+SCNP +L RD ++L +TI RLA+ D FP+T H+E VL R Sbjct: 375 QIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSR 431 >gi|149372775|ref|ZP_01891796.1| putative RNA methyltransferase [unidentified eubacterium SCB49] gi|149354472|gb|EDM43037.1| putative RNA methyltransferase [unidentified eubacterium SCB49] Length = 469 Score = 239 bits (610), Expect = 5e-61, Method: Composition-based stats. Identities = 74/391 (18%), Positives = 137/391 (35%), Gaps = 49/391 (12%) Query: 10 YEQQLAEKVDRLRQ---MMLAFQVPNLQIFRS--EPIHYRMRAEFHIW------------ 52 YE QL K + + ++P + ++ E YR + EF Sbjct: 93 YEHQLFYKQKEVVNNLTRLGKIELPEITPIKAANEQYFYRNKMEFSFSDNKWLTLEQIQS 152 Query: 53 ---HDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALM-------IEMMATIRLEPLLRA 102 D + + + ++ NA+ E+ Sbjct: 153 DAIIDNKNALGFHIPGMWDKILDLNKCYLQQDPSNAIRDFVKAKAQELDIPFYNVRNQTG 212 Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162 L + TS + Q +V + + D R + +Q + Sbjct: 213 ILRTLMIRTSSTGQIMVLVQMFK--DTKSRIDLLDAIQEKFPEITSLQYVINNKGNDTIY 270 Query: 163 DRD----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLEL 216 D+D ++ + L ++ SF Q N+ L + G+ G+ + +L Sbjct: 271 DQDVLCYAGEDHIMEEMEGLTFKINAKSFYQTNSEQAFE-LYKITRDFAGLTGEELVYDL 329 Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276 Y G G + +A+ +V+ VE ++ AA+ N N++ N + K+ Sbjct: 330 YTGTGTIAQFVAKKAKKVIGVESVPDAIIAAKENAERNNITNAEFYVGDMKDVFN----- 384 Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSI 334 +D + + DPPR G+ V + P I+Y+SCN + RDL++ Sbjct: 385 ------EDFVNTHGKADIVITDPPRDGMHKDVVQQLINLNAPKIVYVSCNSATQARDLAL 438 Query: 335 LSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 L + + ++ D FP T H+E VLL R+ Sbjct: 439 LDENYKVTKVQPVDMFPQTHHVENVVLLERR 469 >gi|301163521|emb|CBW23072.1| putative RNA methyltransferase [Bacteroides fragilis 638R] Length = 472 Score = 239 bits (610), Expect = 5e-61, Method: Composition-based stats. Identities = 75/399 (18%), Positives = 143/399 (35%), Gaps = 59/399 (14%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFH------------- 50 Y +Q+ K ++ + + ++ YR + EF Sbjct: 91 PYAEQIKYKQKQVEDNLRRIGKIELPEISPILGSAKTEFYRNKLEFTFSNKRWLTAEEVK 150 Query: 51 --IWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----LRAK- 103 + +D + + + I+ + N + + LR++ Sbjct: 151 QDVKYDQMNAVGFHIPGAFDKVLAIEKCWLQDDISNRIRNTIRDYAYEHNYSFINLRSQE 210 Query: 104 --LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDA-----------LHARKYQIQ 150 L + TS S + +V LI ++ ++ + +L L+ + Sbjct: 211 GMLRNMIVRTSSSGELMVILIC-KITEEHEMDLFKQLLQYVADQFPEITSLLYIINNKCN 269 Query: 151 LIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ 210 + D++ E + L ++ SF Q N+ + L V G+ Sbjct: 270 DTINDLDVHVFRGNDHIFEEM----EGLRFKVGPKSFYQTNSEQAYN-LYKVARDFAGLT 324 Query: 211 GD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268 GD + +LY G G + ++R +V+ +E ++E A+ N N + N K+ Sbjct: 325 GDELVYDLYTGTGTIANFVSRQARKVIGIEYVPEAIEDAKVNAEINGIENTLFFAGDMKD 384 Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPD 326 +D R I DPPR+G+ V ++ I+Y+SCNP Sbjct: 385 ILT-----------QDFINQYGRPDVIITDPPRAGMHQDVVDVILFAEPKRIVYVSCNPA 433 Query: 327 SLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 + RDL +L + ++ + D FP+T H+E VLL K Sbjct: 434 TQARDLQLLDVKYRVKAVQPVDMFPHTHHVENVVLLELK 472 >gi|317154458|ref|YP_004122506.1| TrmA family RNA methyltransferase [Desulfovibrio aespoeensis Aspo-2] gi|316944709|gb|ADU63760.1| RNA methyltransferase, TrmA family [Desulfovibrio aespoeensis Aspo-2] Length = 465 Score = 239 bits (610), Expect = 5e-61, Method: Composition-based stats. Identities = 81/394 (20%), Positives = 146/394 (37%), Gaps = 40/394 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVP-----NLQIFRSEPIHYRMRAEFHIWHDGD 56 L Y +QLA+K ++ + + + YR + EF D Sbjct: 81 GCALQHLAYPEQLAQKNAQVAAALTRIGGVQDLVMDAPAGSPDIWGYRNKMEFAFEQRED 140 Query: 57 DLYHIMF---DQQTKE---RMRIDYFMPGSLLINALMIEMMATIRL------EPLLRAKL 104 L+ + + + + ID + +M+ + P + Sbjct: 141 GLHLGLREPTPEGSNRPGPVLDIDQCHLCAAWDVEIMVAVRQFCAATGVPAYNPATESGF 200 Query: 105 FQIDYLT-SQSDQAIVTLIYHR------LLDDAWRECAIR---LRDALHARKYQIQLIGR 154 ++ + + + + +V LI R L+ D R L +H+ + + + Sbjct: 201 WRHLVIRHAAAGEVMVHLITARDERKDNLIKDMAELFLQRFPELASFVHSTRVKRTTVAF 260 Query: 155 ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL 214 K L +V+ERL R + YR N+F Q N G + V +L Sbjct: 261 GEKIVYSLGNAFVEERLARGEREVRYRLSPNAFFQTNTGGASELFGTVAEFCALSDTHVL 320 Query: 215 -ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273 +LYCG G + LA RV+ E ++ +V AR + N + N V S ++ Sbjct: 321 LDLYCGTGAIGIYLAGEAGRVIGYEQSEEAVTKARESARLNGLTNCSFVSGSLEQGIPGF 380 Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRD 331 + + + RSG+ + T + A P I+ +SC+P +L RD Sbjct: 381 AGSGDQAVPDVVVVDPP----------RSGMHEKTAEALLALGAPRIVAVSCDPATLARD 430 Query: 332 LSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 + L+ + + R+ D FP+T H+E LL + Sbjct: 431 VKRLADRYHVTRVRAVDMFPHTHHIETVALLELR 464 >gi|329955143|ref|ZP_08296100.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides clarus YIT 12056] gi|328526142|gb|EGF53161.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides clarus YIT 12056] Length = 475 Score = 239 bits (610), Expect = 5e-61, Method: Composition-based stats. Identities = 76/398 (19%), Positives = 144/398 (36%), Gaps = 57/398 (14%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFHIWHDG-------- 55 Y +Q+ K ++ + + + YR + E+ + Sbjct: 91 PYSEQIKYKQKQVTDNLTRIGKVELPEISPILGSEKTEFYRNKLEYTFSNKRWLTAEEVR 150 Query: 56 -DDLYHIMFDQQTK------ERMRIDYFMPGSLLINALMIEMMATIRLEPL----LRAK- 103 + +Y M + + I+ + N + + LR + Sbjct: 151 QNVVYEQMNAVGFHIPNAFDKVLAIEKCWLQDDISNRIRNAVRDYAYEHDYSFINLRTQE 210 Query: 104 --LFQIDYLTSQSDQAIVTLIYHRLLDDAW---RECAIRLRDALHARKYQIQLIGRA-NK 157 L + TS + + +V LI D+ ++ + D + +I N Sbjct: 211 GMLRNMIVRTSSTGELMVILICKIEKDEEMALFKQLLQYVADTFPEITSLLYIINNKCND 270 Query: 158 TKICL------DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG 211 T L +D++ E + L ++ SF Q N+ + L V G+ G Sbjct: 271 TITDLDVHTFKGKDHIFEEM----EGLRFKVGPKSFYQTNSKQAYN-LYKVARNFAGLTG 325 Query: 212 D--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269 + + +LY G G + +++ +V+ +E ++E A+ N N + N K+ Sbjct: 326 NELVYDLYTGTGTIANFVSKQARQVIGIEYVPEAIEDAKVNAEINGIKNTLFFAGDMKDM 385 Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDS 327 +D R I DPPR+G+ V ++ I+Y+SCNP + Sbjct: 386 LT-----------QDFINEYGRPDVIITDPPRAGMHQDVVDVILFAEPKRIVYVSCNPAT 434 Query: 328 LCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 RDL +L + ++ + D FP+T H+E VLL K Sbjct: 435 QARDLQLLDAKYKVKAVQPVDMFPHTHHVENVVLLELK 472 >gi|298481085|ref|ZP_06999279.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides sp. D22] gi|298272659|gb|EFI14226.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides sp. D22] Length = 472 Score = 239 bits (610), Expect = 5e-61, Method: Composition-based stats. Identities = 71/399 (17%), Positives = 143/399 (35%), Gaps = 59/399 (14%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFH------------- 50 Y +Q+ K ++ + + + YR + EF Sbjct: 91 PYSEQIRYKQKQVEDNLRRIGKIELPEISPILGSDKTEFYRNKLEFTFSNKRWLTNEEVR 150 Query: 51 --IWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----LRAK- 103 + +D + + + I+ + N + + LR + Sbjct: 151 QDVKYDQMNAVGFHIPGAFDKVLAIEKCWLQDDISNRIRNAVRDYAYEHDYSFINLRTQE 210 Query: 104 --LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDA-----------LHARKYQIQ 150 L + TS + + +V +I ++ +D E +L L+ + Sbjct: 211 GMLRNMIIRTSSTGELMVIVIC-KITEDHEMELFKQLLQFVADSFPEITSLLYIINNKCN 269 Query: 151 LIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ 210 + +D++ E + L ++ SF Q N+ + L + G+ Sbjct: 270 DTINDLDVHVFKGKDHIFEEM----EGLRFKVGPKSFYQTNSEQAYN-LYKIARNFAGLT 324 Query: 211 GD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268 G+ + +LY G G + ++R +V+ +E ++E A+ N N + N K+ Sbjct: 325 GNELVYDLYTGTGTIANFVSRQARQVIGIEYVPEAIEDAKVNAEINDIKNAIFYAGDMKD 384 Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPD 326 +D R I DPPR+G+ + ++ I+Y+SCNP Sbjct: 385 MLT-----------QDFINQHGRPDVIITDPPRAGMHQDVIDVILFAEPKRIVYVSCNPA 433 Query: 327 SLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 + RDL +L+ + ++ + D FP+T H+E VLL + Sbjct: 434 TQARDLQLLNEKYKVKAVQPVDMFPHTHHVENVVLLKLR 472 >gi|218547699|ref|YP_002381490.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia fergusonii ATCC 35469] gi|218355240|emb|CAQ87847.1| 23S rRNA (uracil-5)-methyltransferase [Escherichia fergusonii ATCC 35469] gi|324111189|gb|EGC05172.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia fergusonii B253] Length = 432 Score = 239 bits (610), Expect = 5e-61, Method: Composition-based stats. Identities = 86/368 (23%), Positives = 142/368 (38%), Gaps = 30/368 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHI 61 E Q K L ++M V + I P YR RA + + Sbjct: 89 GCQQQHASVELQQQSKSAALARLM-KHDVAD--IIADAPWGYRRRARLSLNYLAKTQQLQ 145 Query: 62 MFDQQ--TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119 M ++ + + + + I AL+ ++ A + +R L ++ + + S ++ Sbjct: 146 MGFRKAASSDIVDVKQCPILVPQIEALLPKVRACLMSLQTVRH-LGHVELVQATSGTLMI 204 Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179 L + L A RE R H + + L + + + E L Sbjct: 205 -LRHTAPLSSADREKLERFS---HCERLSLFLAPDSEILEPLVG-----ETPWYDSNGLR 255 Query: 180 YRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVE 238 F Q N G+N M+ + Q +L+L+CG GNF+L LA V+ VE Sbjct: 256 LMFSPRDFIQVNDGVNQKMVAQAIEWLDIQPQDRVLDLFCGMGNFTLALATRAASVVGVE 315 Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298 VE R N N + NV + ++ + F + +D Sbjct: 316 GVPALVEKGRENARENGLANVTFYHENLED------------DVTKQPWAKNGFDKVLLD 363 Query: 299 PPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHM 356 P R+G +++ P ++Y+SCNP +L RD L + +TI RLA+ D FP+T H+ Sbjct: 364 PARAGAAGVMQQIIKLEPIRVVYVSCNPATLARDSEALINAGYTIARLAMLDMFPHTGHL 423 Query: 357 ECGVLLVR 364 E VL R Sbjct: 424 ESMVLFER 431 >gi|242051741|ref|XP_002455016.1| hypothetical protein SORBIDRAFT_03g003010 [Sorghum bicolor] gi|241926991|gb|EES00136.1| hypothetical protein SORBIDRAFT_03g003010 [Sorghum bicolor] Length = 558 Score = 239 bits (610), Expect = 5e-61, Method: Composition-based stats. Identities = 76/438 (17%), Positives = 145/438 (33%), Gaps = 93/438 (21%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQM---MLAFQVPNLQIFRSEP-------------IHYRM 45 Y Q+ K ++R + F ++ SEP YR Sbjct: 140 GCKTQTLAYAAQIRHKHLQVRDLLVNFGKFDPKRME--SSEPDAILKPIVPCDEIFRYRN 197 Query: 46 RAEFHIWHD-------GDDLYHIMFDQQTKE----------------RMRIDYFMPGSLL 82 + EF + Q+T E + + S Sbjct: 198 KMEFSFGTKRWVQKELKGKDEEVGVKQETNETDGYALGLHAPGFFDKVLHVQKCFLQSEP 257 Query: 83 INALMIEMMATIRLEPL-------------LRAKLFQID-YLTSQSDQAIVTLIYHRLLD 128 + ++ + T + L+ + + +++ + + +V + Sbjct: 258 ADKVLAVVQETWMDPAVGLTPYDVHKHVGFLKHLMIRTGRNVSTGTPEVMVNFVTPCYKP 317 Query: 129 DAWRECAIRLRDA------LHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182 D ++ ++ + + + + E L R L ++ Sbjct: 318 DLLMPLVDKITKIPEVVSIINNVNSSVGNTSVGEQEYTLYGKPNITEML----RGLTFQI 373 Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGD----LLELYCGNGNFSLVLARHFDRVLAVE 238 NSF Q N +L ++ + G++GD +L+L+CG G L LAR V E Sbjct: 374 SANSFFQTNTKQAD-VLYKLIEDSAGLKGDGSEIVLDLFCGTGTIGLTLARRAKHVYGYE 432 Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298 + ++ AR N N ++N V+ + ++ +E + I D Sbjct: 433 VVPEAIADARKNAKLNGIDNATFVQGDLNKINESFGKEF------------PKPDIIISD 480 Query: 299 PPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTT---------HTIERLALF 347 P R G+ + + P I+Y+SCNP + RDL L + ++ + Sbjct: 481 PNRPGMHMKLIKWLLEVKAPRIVYVSCNPATCARDLDYLCHGVEEKDLRGFYDLKSVIPV 540 Query: 348 DQFPYTRHMECGVLLVRK 365 D FP+T H+EC LL + Sbjct: 541 DMFPHTPHIECVCLLELR 558 >gi|154506231|ref|ZP_02042969.1| hypothetical protein RUMGNA_03773 [Ruminococcus gnavus ATCC 29149] gi|153793730|gb|EDN76150.1| hypothetical protein RUMGNA_03773 [Ruminococcus gnavus ATCC 29149] Length = 559 Score = 239 bits (610), Expect = 5e-61, Method: Composition-based stats. Identities = 87/399 (21%), Positives = 153/399 (38%), Gaps = 51/399 (12%) Query: 2 SGTLL-IDQYEQQLAEKVDRLRQMMLAFQVPN--LQIFRSEP--IHYRMRAEFHIW---- 52 G + YE Q+ K ++++ ++ + ++ P YR + EF Sbjct: 81 GGCMYQTMSYEAQMDMKAEQVKNILNEAVNGEYLFEGVKASPKEFAYRNKMEFSFGDEYK 140 Query: 53 --------HDGDDLYHIMFDQQTKERMRIDYFMPGSLLIN---ALMIEMMATIRLEPLLR 101 H Y ++ K + D + ++ + ++ LR Sbjct: 141 DGPLTLGLHKKGSTYDVLTASDCK-LVHDDMTKILNCVLEYFKERNVSYYKKMQHTGYLR 199 Query: 102 AKLFQIDYLTSQSDQAIVTLIYH----RLLDDAWR--ECAIRLRDALHARKYQIQLIGRA 155 L + T + +VT L +A E ++ LH + + ++ Sbjct: 200 HLLLRRGDRTGEILVNLVTTTQEEHDMSPLKEALLNLELEGKIVGFLHILNDSLSDVVQS 259 Query: 156 NKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG-DLL 214 ++T+I +DY E+L L ++ SF QPN+ + V I + Sbjct: 260 DETRIIYGQDYFYEKLL----NLEFKITPFSFFQPNSRGAEVLYSTVRDYIGDINDMTVF 315 Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274 +L+ G G + VLA +V+ VEI + +VEAA+ N A N ++N K + + Sbjct: 316 DLFSGTGTIAQVLAPVAKQVIGVEIIEEAVEAAKENAAHNGLSNCKFIAGDVFKVL---- 371 Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDL 332 D + I +DPPR G+ + + I+YISC SL RDL Sbjct: 372 -----------DEIEEKPDVIVLDPPRDGIHPKALPKILDYGVDKIVYISCKVTSLARDL 420 Query: 333 SILST-THTIERLALFDQFPYTRHMECGVLLV-RKPSGW 369 ++ + + + DQF T H+E VLL +KP G Sbjct: 421 EMIQARGYEVVKSVAVDQFCQTVHVETVVLLSHKKPDGH 459 >gi|227432576|ref|ZP_03914556.1| TrmA family tRNA (uracil-5-)-methyltransferase [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227351659|gb|EEJ41905.1| TrmA family tRNA (uracil-5-)-methyltransferase [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 463 Score = 239 bits (610), Expect = 6e-61, Method: Composition-based stats. Identities = 75/383 (19%), Positives = 146/383 (38%), Gaps = 39/383 (10%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQV---PNLQIFRSEPIHYRMRAEFHIWHDGDDLYHI 61 L+ +YE QL K +++++ + + I P +YR + + D L Sbjct: 96 LVNLKYEAQLELKQAQVKRLFEEQHIDVSVDRTIGMDNPTYYRNKTIVPVKWQNDHLTSG 155 Query: 62 MFDQQTKERMRIDYFMPGSLLINALMIEMMATIRL------EPLLRAKLFQIDYLTS--Q 113 + + T + + +D + I+ +I + + +P L+ + + Sbjct: 156 FYKRGTHDLVPMDDYFVNDAEIDQAIIVVRNILEKYDITAFDPDLKRGAIRYIMIRRGYY 215 Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANK-------TKICLDRDY 166 S + +V L+ + + E +R+ L K I +I Sbjct: 216 SHELMVVLVSNEEVISHETEIIADIRNQLTELKSLILNYSPKKDYVLLSPNKRILWGEKA 275 Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNFSL 225 + + L + NSF Q N + A +++ Y G G + Sbjct: 276 IYDTLL----GYEFIIGPNSFYQVNPQTTEVLYALAAQKADLKPTDTVIDAYSGIGTIGI 331 Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285 +A +VL VE+ +V A+ N+ N+++N + + + +F + ++ Sbjct: 332 SVASRVKKVLGVEVVPGAVADAQLNLQVNNISNAEYILADA---------PVQFKKWQE- 381 Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDL-SILSTTHTIE 342 + +FVDPPR GL + + I+YISCNP +L RD I+ + I+ Sbjct: 382 --QGLKPDVVFVDPPRRGLTTSLINATTDMSPEKIVYISCNPVTLSRDAVEIIENGYHID 439 Query: 343 -RLALFDQFPYTRHMECGVLLVR 364 + DQFP T H+E + + Sbjct: 440 GSVLPVDQFPQTSHVESITVFRK 462 >gi|295697348|ref|YP_003590586.1| RNA methyltransferase, TrmA family [Bacillus tusciae DSM 2912] gi|295412950|gb|ADG07442.1| RNA methyltransferase, TrmA family [Bacillus tusciae DSM 2912] Length = 528 Score = 239 bits (610), Expect = 6e-61, Method: Composition-based stats. Identities = 73/357 (20%), Positives = 127/357 (35%), Gaps = 42/357 (11%) Query: 35 IFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATI 94 + P YR + + G L + + + + + AL+ + Sbjct: 182 LGMESPWRYRNNIHMAVKNRGGRLAAGYYSSGGRRWVATEDCPIADKRLVALIRAGLRAA 241 Query: 95 RLEPLLRAKLFQIDYLTSQS----------------------DQAIVTLIYHRLLDDAWR 132 + A+ ++S Q ++ + R Sbjct: 242 EVCGWQAAEKATHGPAGARSHGESTGGVGRLYHLAARVAPGTGQTMLIAVVDREQMPHLG 301 Query: 133 ECAIRLRDALHARKYQIQLIGRANKTKICLDRD---YVDERLTVAGRTLIYRQIENSFTQ 189 E + R+RDA+ I + R + I R Y R+ L + SF Q Sbjct: 302 EFSDRVRDAVPEVTSVILNVRRRGEGPIYGRRSIALYGPSRIVDRMGGLWFEISPTSFYQ 361 Query: 190 PNAGINVHMLEWVL-AATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248 N+ M + AA +++ YCG G SL L+R V +E+A+ +V AR Sbjct: 362 VNSQQAERMYRLAVEAAGLDGSQRVVDAYCGVGTLSLFLSRSAAWVTGIEVAREAVADAR 421 Query: 249 YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDAT 308 N N + N + + +E + +R + + +DPPR G Sbjct: 422 RNARMNRIGNARFQVGAVEEILPRLVADR-------------QPDVVTLDPPRRGCRREV 468 Query: 309 VGMV--QAYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLL 362 + + P ++Y+SC+P +L RDL IL + + + D FP T H+E LL Sbjct: 469 LEALICSQVPRVVYVSCDPATLARDLRILAGGGYQVRGVWPVDMFPQTGHVESVALL 525 >gi|195614602|gb|ACG29131.1| hypothetical protein [Zea mays] Length = 558 Score = 239 bits (610), Expect = 6e-61, Method: Composition-based stats. Identities = 79/430 (18%), Positives = 147/430 (34%), Gaps = 93/430 (21%) Query: 10 YEQQLAEKVDRLRQM---MLAFQVPNLQIFRSEP-------------IHYRMRAEFHIWH 53 Y Q+ K ++R + F L+ SEP YR + EF Sbjct: 148 YAAQIRHKHHQVRDLLVNFGKFDPKRLE--SSEPDDILKPTVQCDEIFRYRNKMEFSFGT 205 Query: 54 D-------GDDLYHIMFDQQTKE----------------RMRIDYFMPGSLLINALMIEM 90 D + Q+T E + + S + ++ + Sbjct: 206 KRWVQKELKDKGEEVEVKQETNETDGYALGLHAPGFFDKVLHVQKCFLQSEPADKVLAVV 265 Query: 91 MATIRLEPL-------------LRAKLFQID-YLTSQSDQAIVTLIYHRLLDDAWRECAI 136 T + L+ + + +++ + + +V + D Sbjct: 266 QETWMDPAIGLTPYDVHKHVGFLKHLMIRTGRNISTGTPEVMVNFVTSCYKPDVLMPLVD 325 Query: 137 RLRDA------LHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQP 190 ++ ++ + + + + E L R L ++ NSF Q Sbjct: 326 KITKIPEVVSVINNVNSSVGNSSVGEQEYTLYGKPNITEML----RGLAFQISANSFFQT 381 Query: 191 NAGINVHMLEWVLAATKGIQGD----LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246 N +L ++ + G++GD +L+L+CG G L LAR + E+ ++E Sbjct: 382 NTKQAD-VLYKLIEDSAGLKGDGSEIVLDLFCGTGTIGLTLARRAKHIYGYEVVPEAIED 440 Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306 AR N N +NN V+ + ++ +E + I DP R G+ Sbjct: 441 ARKNAKLNGINNATFVQGDLNKINESFGKEF------------PKPDIIISDPNRPGMHM 488 Query: 307 ATVGMVQ--AYPHILYISCNPDSLCRDLSILSTT---------HTIERLALFDQFPYTRH 355 + + P I+Y+SCNP + RDL L + ++ + D FP+T H Sbjct: 489 KLIKWLLEVKAPRIVYVSCNPATCARDLDYLCHGVEEKDLRGFYELKSVIPVDMFPHTPH 548 Query: 356 MECGVLLVRK 365 +EC LL + Sbjct: 549 IECVCLLELR 558 >gi|256419908|ref|YP_003120561.1| RNA methyltransferase, TrmA family [Chitinophaga pinensis DSM 2588] gi|256034816|gb|ACU58360.1| RNA methyltransferase, TrmA family [Chitinophaga pinensis DSM 2588] Length = 472 Score = 239 bits (610), Expect = 6e-61, Method: Composition-based stats. Identities = 84/404 (20%), Positives = 157/404 (38%), Gaps = 56/404 (13%) Query: 2 SGTLLIDQYEQQLAEKVDRLR---QMMLAFQVPNLQIFRSEP--IHYRMRAEFHIWHDG- 55 + Y+QQL K ++ Q + ++P +Q HYR + EF + Sbjct: 82 GCKWQMLPYDQQLEYKQQQVADNLQRIGKLELPPMQPIMGSRHITHYRNKLEFTFSNKAY 141 Query: 56 ----------------DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL 99 + + + + I+ + +NA+ + A L Sbjct: 142 LPADELELDEDGNIPRKNALGFHVPKLFDKVLDINTCYLQAEPVNAIRNTIRAYALEHNL 201 Query: 100 ----LRAK---LFQIDYLTSQSDQAIVTLIYH-------RLLDDAWRECAIRLRDALHAR 145 +RAK L + + + +V L+ H L D + L+ Sbjct: 202 SFYDIRAKEGWLRNLVIRICTTGEVMVNLVIHHENKKDREALLDHLLATVPGITSVLYTI 261 Query: 146 KYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA 205 ++ + K + YV+E+L ++ SF Q N L V Sbjct: 262 NPKLNDTIFDLEPKTYFGKGYVEEKL----EDFTFKIGPKSFFQTNTYQGEA-LYQVTRD 316 Query: 206 TKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVR 263 G+ G + +LYCG G+ + ++R +V+ +E+ K +++ A N A N+VNN + Sbjct: 317 FAGLTGTEIVYDLYCGTGSIGIFVSRQAGKVVGIELIKEAIDDAIENAARNNVNNAQFYA 376 Query: 264 MSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYI 321 + + + DPPR+G+ + V + A P I+Y+ Sbjct: 377 GDVVDICND-----------AFFAQHGQPDVVITDPPRAGMHEKLVNKLLEIAAPRIVYV 425 Query: 322 SCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 SCNP + RDL++L ++++++ D FP+T H+E VLL ++ Sbjct: 426 SCNPATQARDLALLDVMYSVKKIQPVDMFPHTHHIENVVLLEKR 469 >gi|120555154|ref|YP_959505.1| 23S rRNA 5-methyluridine methyltransferase [Marinobacter aquaeolei VT8] gi|143581341|sp|A1U2U9|RUMA_MARAV RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|120325003|gb|ABM19318.1| 23S rRNA m(5)U-1939 methyltransferase [Marinobacter aquaeolei VT8] Length = 449 Score = 239 bits (609), Expect = 6e-61, Method: Composition-based stats. Identities = 86/380 (22%), Positives = 145/380 (38%), Gaps = 36/380 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-----IFRSEPIHYRMRAEFHIWHDG- 55 +L + Q+ K + LR+ F + + + + YR +A + + Sbjct: 86 GCSLQHMSADAQIRFKENTLREHFAHFGGIEPEQWVAPMRSPDSLGYRRKARLGVRYVKA 145 Query: 56 -DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQS 114 + + +++ ID + I + + + ++ Q++ Sbjct: 146 RESVLVGFREKRNSFLTDIDRCVVLDPRIGERIEPLRELLHGMAAF-DRIAQVEVACGDD 204 Query: 115 DQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL-----DRDYVDE 169 A+V R +DD + +L A I L + T + RD DE Sbjct: 205 TAAMV----FRNMDDLVPDDREKLIAFGQAHDLHIYLQPKGPDTVHRIWPESGGRD--DE 258 Query: 170 RLTV--AGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLV 226 RLT L FTQ NAGIN +M+ + G+ +L+L+CG GNF+L Sbjct: 259 RLTYRMDEFDLTMAFHPMDFTQVNAGINRNMVHRAVEWLDVQPGERVLDLFCGLGNFTLP 318 Query: 227 LARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDID 286 LAR +V+ VE V R N N ++NV+ Sbjct: 319 LARKGGQVVGVEGDDAMVVRGRENARLNDLSNVEFHGAD------------LHGDFTGQS 366 Query: 287 IHSYRFKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSIL-STTHTIERL 344 F I +DPPRSG ++ + I+Y+SCNP +L RD ++ + + + Sbjct: 367 WAKEGFDKILIDPPRSGAEEICKYLTAFGANRIVYVSCNPATLARDAGVMVRNGYRLVQA 426 Query: 345 ALFDQFPYTRHMECGVLLVR 364 + D FP+T H+E L R Sbjct: 427 GVMDMFPHTTHVESIALFER 446 >gi|315037858|ref|YP_004031426.1| RNA methyltransferase [Lactobacillus amylovorus GRL 1112] gi|325956332|ref|YP_004291744.1| RNA methyltransferase [Lactobacillus acidophilus 30SC] gi|312275991|gb|ADQ58631.1| RNA methyltransferase [Lactobacillus amylovorus GRL 1112] gi|325332897|gb|ADZ06805.1| RNA methyltransferase [Lactobacillus acidophilus 30SC] gi|327183151|gb|AEA31598.1| RNA methyltransferase [Lactobacillus amylovorus GRL 1118] Length = 459 Score = 239 bits (609), Expect = 6e-61, Method: Composition-based stats. Identities = 71/386 (18%), Positives = 143/386 (37%), Gaps = 40/386 (10%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNL-------QIFRSEPIHYRMRAEFHIWHDGDD 57 L Y++QL K + + + + + I +P HYR +A++ I Sbjct: 90 LSHLSYDKQLEFKRNNMLESLKKYHPRGYAKYKVKKTIPAPDPWHYRNKAQYQIESVHGK 149 Query: 58 LYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLFQ 106 +F + + + + LI L + + R P ++ + + Sbjct: 150 TKLGLFAPNSHRLIDLPKMPTQNEDTQKTEREIKELIEKLHVPVANYRRHLPGIKTVVVR 209 Query: 107 IDYLTSQSDQAIVTLIYH-RLLDDAWRECAI--RLRDALHARKYQIQLIGRANKTKICLD 163 T + ++T+ + + L +E + NKT+ L Sbjct: 210 QSEATKEIQVTLITIDHKLKNLIPLAKEIMKLDHVVSVYQNETEWQNPQVWGNKTEKLLG 269 Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGN 222 ++ + E + L +F Q N V++ L L++ Y G G Sbjct: 270 KNQIVEEILGKKFAL----SPRAFFQLNPVQTVNLYSEALKYLDLTPDQTLIDAYSGVGT 325 Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282 ++ A +V+ +E +V+ A++N+ NH+ N ++ ++++ L Sbjct: 326 LGILAADRVKQVIGIETIPEAVKDAQHNVELNHIKNADYIQGATEKV------------L 373 Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLSILSTTHT 340 ++ + VDPPR+GL + + + +YISCNP +L +DL +LS + Sbjct: 374 PELQNSGVSIDALIVDPPRTGLAKSLIKTILRVKPETFVYISCNPSTLAQDLVLLSEAYD 433 Query: 341 IERLALFDQFPYTRHMECGVLLVRKP 366 + + D P T E LV + Sbjct: 434 VRLIQNVDMLPQTPRCEAIAKLVLRK 459 >gi|319902370|ref|YP_004162098.1| 23S rRNA m(5)U-1939 methyltransferase [Bacteroides helcogenes P 36-108] gi|319417401|gb|ADV44512.1| 23S rRNA m(5)U-1939 methyltransferase [Bacteroides helcogenes P 36-108] Length = 475 Score = 239 bits (609), Expect = 6e-61, Method: Composition-based stats. Identities = 77/400 (19%), Positives = 145/400 (36%), Gaps = 57/400 (14%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFHIWHDG-------- 55 Y +Q+ K ++ ++ + + YR + E+ + Sbjct: 91 PYSEQIKYKQKQVTDNLIRIGKIELPEISPILGSEKTQFYRNKLEYTFSNKRWLTNAEIQ 150 Query: 56 -DDLYHIMFDQQTK------ERMRIDYFMPGSLLINALMIEMMATIRLEPL----LRAK- 103 + +Y M + + I+ + N + + LR + Sbjct: 151 QNVVYEQMNAVGFHIPNAFDKVLAIEKCWLQDDISNRIRNAVRDYAYEHDYSFINLRTQE 210 Query: 104 --LFQIDYLTSQSDQAIVTLIYHRLLDDAW---RECAIRLRDALHARKYQIQLIGRA-NK 157 L + TS + + +V LI D+ ++ + D + +I N Sbjct: 211 GMLRNMIVRTSTTGELMVILICKIEKDEEMELFKQLLQYVADTFPEITSLLYIINNKCND 270 Query: 158 TKICL------DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG 211 T L +D++ E + L ++ SF Q N+ + L + G+ G Sbjct: 271 TITDLDVYTFKGKDHIFEEM----EGLRFKVGPKSFYQTNSEQAYN-LYKIARNFAGLTG 325 Query: 212 D--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269 D + +LY G G + ++ RV+ +E ++E A+ N N + N K+ Sbjct: 326 DELVYDLYTGTGTIANFVSGKARRVIGIEYVPEAIEDAKVNAEINGIKNTLFFAGDMKDM 385 Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDS 327 +D R I DPPR+G+ V ++ I+Y+SCNP + Sbjct: 386 LT-----------QDFINQYGRPDVIITDPPRAGMHQDVVDVILFAEPKRIVYVSCNPAT 434 Query: 328 LCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRKPS 367 RDL +L + ++ + D FP+T H+E VLL K + Sbjct: 435 QARDLQLLDVKYKVKAVQPVDMFPHTHHVENVVLLELKAN 474 >gi|160901890|ref|YP_001567471.1| RNA methyltransferase [Petrotoga mobilis SJ95] gi|160359534|gb|ABX31148.1| RNA methyltransferase, TrmA family [Petrotoga mobilis SJ95] Length = 387 Score = 239 bits (609), Expect = 6e-61, Method: Composition-based stats. Identities = 89/397 (22%), Positives = 160/397 (40%), Gaps = 58/397 (14%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ---------VPNLQIFRSEPIHYRMRAEFHIW 52 + L YE+QL K + + +Q P++ I+ YR + E+ Sbjct: 12 GCSKLHINYEEQLKIKEKNVLSLFDQYQIKPNNYHGITPSVDIYE-----YRNKMEYSFG 66 Query: 53 HDGDDLYHIMFDQQTKERMRIDYFMPGSLLIN---------------ALMIEMMATIRLE 97 ++ D ++ + ++ + Y+ L++ I Sbjct: 67 NEYKDGPLVLGLRGKGKKFDV-YYTKDCKLVDYDFNNIVIKTREFFLKKNIPFRNYKNHS 125 Query: 98 PLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDA--WRECAIR------LRDALHARKYQI 149 LR + T + +VT + + + W+E + + + ++ Sbjct: 126 GFLRNLGIRKGLKTGEILLNLVTSLDNTYYQEVETWKEEMLNTNLKGNIVSIIQSKTESK 185 Query: 150 QLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGI 209 + +A++ +I RDY E++ L ++ SF Q N + + L+ + Sbjct: 186 ANVVKADEMEILYGRDYFYEKIL----DLTFKIGPFSFFQTNTKGTEVLYQTALSYAEN- 240 Query: 210 QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269 + + Y G G SL+LA +V +EI K +VEAA+ N N++NNV+ V K+F Sbjct: 241 SDVVYDFYSGTGTISLLLANKAKKVYGIEIIKEAVEAAKQNAILNNINNVEFVNKDVKDF 300 Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDS 327 + + + I VDPPR+GL + ++ I+YISCNP + Sbjct: 301 VKQQS-------------STEKPDYIVVDPPRAGLHPNLIKFIKTQQFNKIIYISCNPKT 347 Query: 328 LCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 L +L LS +TI L D FP+T H+E VL+ R Sbjct: 348 LIPNLKELSDLYTISDFHLVDMFPHTDHVESVVLMTR 384 >gi|218961437|ref|YP_001741212.1| SAM-dependent methyltransferase related to tRNA (uracil-5-)-methyltransferase [Candidatus Cloacamonas acidaminovorans] gi|167730094|emb|CAO81006.1| SAM-dependent methyltransferase related to tRNA (uracil-5-)-methyltransferase [Candidatus Cloacamonas acidaminovorans] Length = 456 Score = 239 bits (609), Expect = 7e-61, Method: Composition-based stats. Identities = 94/386 (24%), Positives = 152/386 (39%), Gaps = 42/386 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSE-PI--HYRMRAEFHIW--HDGD 56 L+ +Y +QL +K L ++ F ++ F + P HYR + + + Sbjct: 80 GCDWLMLKYSEQLKQKNQLLLELFSPFIDKDVIYFPAPSPQIKHYRNKVFMPVGKNYQTG 139 Query: 57 DLYHIMFDQQTKERMRIDYF----MPGSLLINALM-------IEMMATIRLEPLLRAKLF 105 + + MF + + + + + L N+LM +E I + LR F Sbjct: 140 KITYGMFARFSHQIVEHNTCENHPPIFDQLANSLMEFCLKAKVEPYNEIEHKGQLRHIGF 199 Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD 165 + + S Q +V L+ +L K IQ I R K + L ++ Sbjct: 200 RCN---SDGRQILVILVTLSGKLPFTNLLVKKLTTEFPQIKGIIQNINR-QKENVILGKE 255 Query: 166 ----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNG 221 Y E L L +R SF Q N G + M+ L +L+ YCG G Sbjct: 256 TKLLYGSENLYDNLCGLKFRINYRSFWQINTG-TMEMIISFLQDFVNSNNVILDAYCGIG 314 Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281 L LA RV+ +E ++E A+ N N + NV V ++ A+ Sbjct: 315 AIGLSLADKVKRVILLEEFPQAIEDAKENAVLNGLKNVSFVIGKVEDNLSAV-------- 366 Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL--ST 337 + + TI +DPPRSG+ + + I+Y+SC P +L RDL+ L Sbjct: 367 -----LIKEKPDTIIMDPPRSGVQQNALEAIIQAEVKQIIYLSCAPMTLARDLNTLIAGE 421 Query: 338 THTIERLALFDQFPYTRHMECGVLLV 363 + + L FD FP T H+EC +L Sbjct: 422 KYKVVFLQPFDMFPNTWHIECLAVLK 447 >gi|116617569|ref|YP_817940.1| tRNA (uracil-5-)-methyltransferase related enzyme [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116096416|gb|ABJ61567.1| 23S rRNA m(5)U-1939 methyltransferase [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 463 Score = 239 bits (609), Expect = 7e-61, Method: Composition-based stats. Identities = 75/383 (19%), Positives = 146/383 (38%), Gaps = 39/383 (10%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQV---PNLQIFRSEPIHYRMRAEFHIWHDGDDLYHI 61 L+ +YE QL K +++++ + + I P +YR + + D L Sbjct: 96 LVNLKYEAQLELKQAQVKRLFEEQHIDVSVDRTIGMDNPTYYRNKTIVPVKWQNDHLTSG 155 Query: 62 MFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLL-------RAKLFQIDYLTSQ- 113 + + T + + +D + I+ +I + + + R + I Sbjct: 156 FYKRGTHDLVPMDDYFVNDAEIDQAIIVVRNILEKYDITAFDPDLERGAIRYIMIRRGYY 215 Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANK-------TKICLDRDY 166 S + +V L+ + + E +R+ L K I +I Sbjct: 216 SHELMVVLVSNEEVISHETEIIADIRNQLTELKSLILNYSPKKDYVLLSPNNRILWGEKA 275 Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNFSL 225 + + L + NSF Q N + + A +++ Y G G + Sbjct: 276 IYDTLL----GYEFIIGPNSFYQVNPQTTEVLYDLAAQKADLKPTDTVIDAYSGIGTIGI 331 Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285 +A +VL VE+ +V A+ N+ N+++N + + + +F + ++ Sbjct: 332 SVASRVKKVLGVEVVPGAVADAQLNLQVNNISNAEYILADA---------PVQFKKWQE- 381 Query: 286 DIHSYRFKTIFVDPPRSGLDDATV--GMVQAYPHILYISCNPDSLCRDL-SILSTTHTIE 342 + +FVDPPR GL + + + I+YISCNP +L RD I+ + I+ Sbjct: 382 --QGLKPDVVFVDPPRRGLTTSLINGTTDMSPEKIVYISCNPVTLSRDAVEIIENGYHID 439 Query: 343 -RLALFDQFPYTRHMECGVLLVR 364 + DQFP T H+E + + Sbjct: 440 GSVLPVDQFPQTSHVESITVFRK 462 >gi|313147266|ref|ZP_07809459.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] gi|313136033|gb|EFR53393.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] Length = 463 Score = 239 bits (609), Expect = 7e-61, Method: Composition-based stats. Identities = 75/397 (18%), Positives = 145/397 (36%), Gaps = 55/397 (13%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFH------------- 50 Y +Q+ K ++ + + ++ YR + EF Sbjct: 82 PYAEQIKYKQKQVEDNLRRIGKIELPEISPILGSAKTEFYRNKLEFTFSNKRWLTAEEVK 141 Query: 51 --IWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----LRAK- 103 + +D + + + I+ + N + + LR++ Sbjct: 142 QDVKYDQMNAVGFHIPGAFDKVLAIEKCWLQDDISNRIRNTIRDYAYEHNYSFINLRSQE 201 Query: 104 --LFQIDYLTSQSDQAIVTLIYHRLLD---DAWRECAIRLRDALHARKYQIQLIGRA-NK 157 L + TS + + +V LI + D +++ + D + +I N Sbjct: 202 GMLRNMIVRTSSTGELMVILICKITEEHEMDLFKQLLQYVADQFPEITSLLYIINNKCND 261 Query: 158 T------KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG 211 T + D++ E + L ++ SF Q N+G ++ + G Sbjct: 262 TINDLDVHVFRGNDHIFEEM----EGLRFKVGPKSFYQTNSGQAYNLYKVARDFAGLTGG 317 Query: 212 DLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270 +L+ +LY G G + ++R +V+ +E ++E A+ N N + N K+ Sbjct: 318 ELVYDLYTGTGTIANFVSRQARQVIGIEYVPEAIEDAKVNAEINGIENTLFFAGDMKDIL 377 Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSL 328 +D R I DPPR+G+ V ++ I+Y+SCNP + Sbjct: 378 T-----------QDFINQYGRPDVIITDPPRAGMHQDVVDVILFAEPKRIVYVSCNPATQ 426 Query: 329 CRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 RDL +L + ++ + D FP+T H+E VLL K Sbjct: 427 ARDLQLLDVKYRVKAVQPVDMFPHTHHVENVVLLELK 463 >gi|170016721|ref|YP_001727640.1| 23S rRNA (uracil-5-)-methyltransferase [Leuconostoc citreum KM20] gi|169803578|gb|ACA82196.1| 23S rRNA (uracil-5-)-methyltransferase [Leuconostoc citreum KM20] Length = 462 Score = 239 bits (609), Expect = 7e-61, Method: Composition-based stats. Identities = 81/386 (20%), Positives = 147/386 (38%), Gaps = 45/386 (11%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQ---VPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHI 61 L+ +YE QL K +++++ A V + I + P +YR + + L Sbjct: 94 LVNLKYEAQLELKRQQVKRLFEAQNIEVVVDSTIGMANPTYYRNKTIVPVKWQNGHLTSG 153 Query: 62 MFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-----------LRAKLFQIDYL 110 + + T E + + + I+ +I + + + +R + + Y Sbjct: 154 FYRRGTHELVPMTDYFVNDANIDQAIITVREVLENYQISAYDPDTQVGAIRYIMIRRGYY 213 Query: 111 TSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANK-------TKICLD 163 S + +V L+ + + LR L K I + Sbjct: 214 ---SHELMVVLVANDAQINHESAITQELRQNLPELKSLIFNYSPKKDYVLLSPNNRTLWG 270 Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGN 222 + + L + NSF Q N + + D +++ Y G G Sbjct: 271 ETAIKDTLL----GYTFLIGPNSFYQVNPQTTEVLYDLAARKADLKTTDIVIDAYSGIGT 326 Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282 + +A+ +VL VE+ +V A+ N+ NHV+N + + + Q + +E N Sbjct: 327 IGITVAKQVRKVLGVEVVPGAVADAQLNMRMNHVDNAEYILADA---PQQFKLWQEAN-- 381 Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STTH 339 + +FVDPPR GL +A + A I+Y+SCNP +L RD S L + Sbjct: 382 -------LQPDVVFVDPPRRGLTNALIKATTDMAPDRIVYVSCNPVTLVRDASELVQQGY 434 Query: 340 TIER-LALFDQFPYTRHMECGVLLVR 364 I+ + DQFP T H+E + + Sbjct: 435 HIDGPVLPVDQFPQTSHVESITVFKK 460 >gi|53713830|ref|YP_099822.1| RNA methyltransferase [Bacteroides fragilis YCH46] gi|60682048|ref|YP_212192.1| putative RNA methyltransferase [Bacteroides fragilis NCTC 9343] gi|253565800|ref|ZP_04843255.1| RNA methyltransferase [Bacteroides sp. 3_2_5] gi|265764175|ref|ZP_06092743.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides sp. 2_1_16] gi|52216695|dbj|BAD49288.1| RNA methyltransferase [Bacteroides fragilis YCH46] gi|60493482|emb|CAH08268.1| putative RNA methyltransferase [Bacteroides fragilis NCTC 9343] gi|251946079|gb|EES86486.1| RNA methyltransferase [Bacteroides sp. 3_2_5] gi|263256783|gb|EEZ28129.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides sp. 2_1_16] Length = 472 Score = 239 bits (609), Expect = 7e-61, Method: Composition-based stats. Identities = 77/398 (19%), Positives = 145/398 (36%), Gaps = 57/398 (14%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFH------------- 50 Y +Q+ K ++ + + ++ YR + EF Sbjct: 91 PYAEQIKYKQKQVEDNLRRIGKIELPEISPILGSAKTEFYRNKLEFTFSNKRWLTAEEVK 150 Query: 51 --IWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----LRAK- 103 + +D + + + I+ + N + + LR++ Sbjct: 151 QDVKYDQMNAVGFHIPGAFDKVLAIEKCWLQDDISNRIRNTIRDYAYEHNYSFINLRSQE 210 Query: 104 --LFQIDYLTSQSDQAIVTLIYHRLLD---DAWRECAIRLRDALHARKYQIQLIGRA-NK 157 L + TS + + +V LI + D +++ + D + +I N Sbjct: 211 GMLRNMIVRTSSTGELMVILICKITEEHEMDLFKQLLQYVADQFPEITSLLYIINNKCND 270 Query: 158 T------KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG 211 T + D++ E + L ++ SF Q N+ + L V G+ G Sbjct: 271 TINDLDVHVFRGNDHIFEEM----EGLRFKVGPKSFYQTNSEQAYN-LYKVARDFAGLTG 325 Query: 212 D--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269 D + +LY G G + ++R +V+ +E ++E A+ N N + N K+ Sbjct: 326 DELVYDLYTGTGTIANFVSRQARKVIGIEYVPEAIEDAKVNAEINGIENTLFFAGDMKDI 385 Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDS 327 +D R I DPPR+G+ V ++ I+Y+SCNP + Sbjct: 386 LT-----------QDFINQYGRPDVIITDPPRAGMHQDVVDVILFAEPKRIVYVSCNPAT 434 Query: 328 LCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 RDL +L + ++ + D FP+T H+E VLL K Sbjct: 435 QARDLQLLDVKYRVKAVQPVDMFPHTHHVENVVLLELK 472 >gi|325496175|gb|EGC94034.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia fergusonii ECD227] Length = 432 Score = 239 bits (609), Expect = 7e-61, Method: Composition-based stats. Identities = 86/368 (23%), Positives = 143/368 (38%), Gaps = 30/368 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHI 61 E Q K L ++M V + I P YR RA + + Sbjct: 89 GCQQQHASVELQQQSKSAALARLM-KHDVAD--IIADAPWGYRRRARLSLNYLAKTQQLQ 145 Query: 62 MFDQQ--TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119 M ++ + + + + I AL+ ++ A + +R L ++ + + S ++ Sbjct: 146 MGFRKAASSDIVDVKQCPILVPQIEALLPKVRACLMSLQTVRH-LGHVELVQATSGTLMI 204 Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179 L + L A RE R H + + L + + + E L Sbjct: 205 -LRHTAPLSSADREKLERFS---HCERLSLFLAPDSEILEPLVG-----ETPWYDSNGLR 255 Query: 180 YRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVE 238 + F Q N G+N M+ + Q +L+L+CG GNF+L LA V+ VE Sbjct: 256 LMFSPHDFIQVNDGVNQKMVAQAIEWLDIQPQDRVLDLFCGMGNFTLALATRAASVVGVE 315 Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298 VE R N N + NV + ++ + F + +D Sbjct: 316 GVPALVEKGRENARENGLANVTFYHENLED------------DVTKQPWAKNGFDKVLLD 363 Query: 299 PPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHM 356 P R+G +++ P ++Y+SCNP +L RD L + +TI RLA+ D FP+T H+ Sbjct: 364 PARAGAAGVMQQIIKLEPIRVVYVSCNPATLARDSEALINAGYTIARLAMLDMFPHTGHL 423 Query: 357 ECGVLLVR 364 E VL R Sbjct: 424 ESMVLFER 431 >gi|269120598|ref|YP_003308775.1| RNA methyltransferase, TrmA family [Sebaldella termitidis ATCC 33386] gi|268614476|gb|ACZ08844.1| RNA methyltransferase, TrmA family [Sebaldella termitidis ATCC 33386] Length = 451 Score = 239 bits (609), Expect = 7e-61, Method: Composition-based stats. Identities = 72/392 (18%), Positives = 160/392 (40%), Gaps = 50/392 (12%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI------FRSEPIHYRMRAEFHIWHDG 55 + +Y++QL K L + + N +I +YR + Sbjct: 80 GCDYAMIKYDKQLEYKSSILLETIKKIGKINDEINFEGIIGADNITNYRNKVSEPFAKKD 139 Query: 56 DDLYHIMFDQQTKERMRIDYFM----PGSLLINALMIEM-------MATIRLEPLLRAKL 104 + + +++ + ++ M ++N L+ ++ + LR L Sbjct: 140 GKIITGFYQKKSHDVFEVENNMLRSKIADKVVNELLEKLNEGDFTVYNEVNKSGFLRYLL 199 Query: 105 FQIDYLTSQSDQAIVTLIYH--------RLLDDAWRECAIRLRDALHARKYQIQLIGRAN 156 + + ++ ++T++ + R + E + + K N Sbjct: 200 VRNN----SRNEVMITVVINKTTQLKKLRTVLLGLTEKYKEIVSVYISLKSDEGNYVLGN 255 Query: 157 KTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG-DLLE 215 + K+ +Y++E L + ++ +SF Q N+ + + + + +++ Sbjct: 256 EHKLIYGSEYLEEEL----DGIKFKIYPDSFFQINSEQTIKLYNKAMEYLGDSEDKRIVD 311 Query: 216 LYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275 + G G +++++ +V +E + SV +A++ A N++ NV+ + Sbjct: 312 AFSGTGTLGMLVSKTARKVYCIESMESSVISAKHTAAENNIKNVRFKIGKVE-------- 363 Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLS 333 N+L +I + + + I DPPR G+D+ T+ + + I+YISCNP +L RD+ Sbjct: 364 ----NKLPEI-LKNTKMDGIIFDPPRKGIDENTLKSIGKHGIERIVYISCNPSTLARDVK 418 Query: 334 ILST-THTIERLALFDQFPYTRHMECGVLLVR 364 IL+ + +E+LA D FP T H+E L ++ Sbjct: 419 ILTDLGYRLEKLAAVDMFPQTHHIEAVSLFLK 450 >gi|107100389|ref|ZP_01364307.1| hypothetical protein PaerPA_01001414 [Pseudomonas aeruginosa PACS2] Length = 452 Score = 239 bits (609), Expect = 7e-61, Method: Composition-based stats. Identities = 88/374 (23%), Positives = 138/374 (36%), Gaps = 36/374 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWHDGDD 57 TL ++ +QLA K L++ + F + YR RA + D Sbjct: 101 GCTLQHLEHGEQLALKQRTLQEQLQRFAGIEPEEWAAPLVGPEFGYRRRARIAVRWDARA 160 Query: 58 LY--HIMFDQQTKERMRIDYFM---PGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTS 112 ++E + D + P I + ++ R + + Sbjct: 161 RRLDVGFRASASQEIVAFDECLVLVPPLQTIARALPALLQDFRKPESIGHVELFHGTAS- 219 Query: 113 QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLT 172 A++ L+D E RL A + Q+ L G + + + L Sbjct: 220 ----ALLLRHTTALVD----EDRQRLAAFCSAHQAQLWLQGAEQPLPVEPAAE-LGYSLG 270 Query: 173 VAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHF 231 TL YR F Q NA +N M+ L + +L+L+CG GNFSL LAR Sbjct: 271 DWQLTLAYR--PGDFVQVNAPVNESMIRQALDWLAPTADERVLDLFCGLGNFSLPLARRV 328 Query: 232 DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291 RV+ VE VE A N AN + N + + L + Sbjct: 329 ARVVGVEGVAAMVERAGANALANGLGNAHFFQADLSKA------------LAEAPWAEQG 376 Query: 292 FKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSILS-TTHTIERLALFDQ 349 F + +DPPR G +A M ++Y+SCNP +L RD ++ + ++R + D Sbjct: 377 FTAVLLDPPRDGAFEAVREMSSLGARRVVYVSCNPATLARDAGEMARQGYRLKRAGILDM 436 Query: 350 FPYTRHMECGVLLV 363 FP T H+E L Sbjct: 437 FPQTAHVEAMALFE 450 >gi|210623379|ref|ZP_03293776.1| hypothetical protein CLOHIR_01726 [Clostridium hiranonis DSM 13275] gi|210153640|gb|EEA84646.1| hypothetical protein CLOHIR_01726 [Clostridium hiranonis DSM 13275] Length = 458 Score = 239 bits (609), Expect = 8e-61, Method: Composition-based stats. Identities = 77/391 (19%), Positives = 142/391 (36%), Gaps = 47/391 (12%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAE--FHIWHDG 55 T+L Y +QL K +++ ++ + + + + YR + E F G Sbjct: 79 GCTMLSVDYAKQLEIKEEQVLELFEDAGIRGFEFLGVQGSPDNVGYRNKMEYTFGDEVKG 138 Query: 56 DDLYHIMFDQQTKERMR-IDYFMPGSLLINALMIEMMA-----------TIRLEPLLRAK 103 L + + ++ +D M N ++ E +A + E LR Sbjct: 139 GPLTLGLHKKGRHIDIQTVDGCMLVDSDFNTILKESLAFFQDAELPYYRVVNHEGYLRNL 198 Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWR------ECAIRLRDALHARKYQIQLIGRANK 157 + + T + IVT + E + LH + + ++ Sbjct: 199 VVRKGIHTDEIMVNIVTSSQCEFDMSKFADMINGLELKGNVVSILHTINDGLADAVQCDE 258 Query: 158 TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-EL 216 +I DY+ E + L ++ SF Q N + ++ +L Sbjct: 259 MRILYGVDYLHEEIL----GLKFKISPFSFFQTNTKGAEQLYTIARDFIGDHSNKVVFDL 314 Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276 Y G G+ ++A +V +EI + +V AA N N ++N + + K+ +++ Sbjct: 315 YSGTGSIGQLMAEKAKKVYGIEIIEEAVVAANENAKLNGLDNCEFIAGDVKDTVKSL--- 371 Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLS- 333 + I VDPPR G+ + + I+YISCNP +L DL Sbjct: 372 ------------DVKPDLIIVDPPRPGIHKQAIKDICDFGAKEIVYISCNPKTLVDDLKD 419 Query: 334 ILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 + + E++ D FP T H E V L + Sbjct: 420 FIGYGYMPEKVKCMDMFPNTPHCESVVKLYK 450 >gi|300770388|ref|ZP_07080267.1| 23S rRNA (uracil-5-)-methyltransferase [Sphingobacterium spiritivorum ATCC 33861] gi|300762864|gb|EFK59681.1| 23S rRNA (uracil-5-)-methyltransferase [Sphingobacterium spiritivorum ATCC 33861] Length = 469 Score = 239 bits (609), Expect = 8e-61, Method: Composition-based stats. Identities = 80/400 (20%), Positives = 147/400 (36%), Gaps = 52/400 (13%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVP-----NLQIFRSEPIHYRMRAEFHIWH--- 53 Y QL K + ++ + E +YR + E+ + Sbjct: 85 GCKWQHMDYNGQLKFKQQTVDNVLARIGKVDTSIMEPILGSGETEYYRNKLEYTFSNKRW 144 Query: 54 ----DGDDLYHIMFDQQTK------ERMRIDYFMPGSLLINALMIEMMATIRLEPL---- 99 D + M + + ID+ NA+ ++ A + Sbjct: 145 LTSVDDANEGLEMNALGFHVPGRFDKILDIDHCYLQQDPSNAIRNQIRAFAIEHQISFYD 204 Query: 100 LRAK---LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRAN 156 LR L + T+ + + +V +++ + + ++ + +I + Sbjct: 205 LREHAGALRNLIIRTASTGELMVIVVFAYPQEGQVELLMNYINNSFPDIDSLLYIINQKK 264 Query: 157 -------KTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGI 209 I RD++ E + L Y+ SF Q N+ L + G+ Sbjct: 265 NDTIFDQDIHIFKGRDFIYEEM----EGLKYKIGPKSFYQTNSLQAYE-LYKITREFAGL 319 Query: 210 QGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267 GD + +LY G G + +A+ V+ VE ++E A+ N A N + N K K Sbjct: 320 TGDELVYDLYTGAGTIANFVAKTAREVIGVEYVPTAIEDAKINSAINQIGNTKFYAGDMK 379 Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNP 325 + A D + + DPPR+G+ V + I+Y+SCN Sbjct: 380 DVLTA-----------DFIAEHGKPDVVITDPPRAGMHGDVVQRLLEMEAEKIVYVSCNA 428 Query: 326 DSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 + RDL++L+ +T++R+ D FP+T+H+E VLL K Sbjct: 429 ATQARDLALLNEKYTVDRIKPVDMFPHTQHVENVVLLKLK 468 >gi|255009493|ref|ZP_05281619.1| putative RNA methyltransferase [Bacteroides fragilis 3_1_12] Length = 472 Score = 238 bits (608), Expect = 8e-61, Method: Composition-based stats. Identities = 75/397 (18%), Positives = 145/397 (36%), Gaps = 55/397 (13%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFH------------- 50 Y +Q+ K ++ + + ++ YR + EF Sbjct: 91 PYAEQIKYKQKQVEDNLRRIGKIELPEISPILGSAKTEFYRNKLEFTFSNKRWLTAEEVK 150 Query: 51 --IWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----LRAK- 103 + +D + + + I+ + N + + LR++ Sbjct: 151 QDVKYDQMNAVGFHIPGAFDKVLAIEKCWLQDDISNRIRNTIRDYAYEHNYSFINLRSQE 210 Query: 104 --LFQIDYLTSQSDQAIVTLIYHRLLD---DAWRECAIRLRDALHARKYQIQLIGRA-NK 157 L + TS + + +V LI + D +++ + D + +I N Sbjct: 211 GMLRNMIVRTSSTGELMVILICKITEEHEMDLFKQLLQYVADQFPEITSLLYIINNKCND 270 Query: 158 T------KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG 211 T + D++ E + L ++ SF Q N+G ++ + G Sbjct: 271 TINDLDVHVFRGNDHIFEEM----EGLRFKVGPKSFYQTNSGQAYNLYKVARDFAGLTGG 326 Query: 212 DLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270 +L+ +LY G G + ++R +V+ +E ++E A+ N N + N K+ Sbjct: 327 ELVYDLYTGTGTIANFVSRQARQVIGIEYVPEAIEDAKVNAEINGIENTLFFAGDMKDIL 386 Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSL 328 +D R I DPPR+G+ V ++ I+Y+SCNP + Sbjct: 387 T-----------QDFINQYGRPDVIITDPPRAGMHQDVVDVILFAEPKRIVYVSCNPATQ 435 Query: 329 CRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 RDL +L + ++ + D FP+T H+E VLL K Sbjct: 436 ARDLQLLDVKYRVKAVQPVDMFPHTHHVENVVLLELK 472 >gi|303273590|ref|XP_003056155.1| predicted protein [Micromonas pusilla CCMP1545] gi|226462239|gb|EEH59531.1| predicted protein [Micromonas pusilla CCMP1545] Length = 549 Score = 238 bits (608), Expect = 8e-61, Method: Composition-based stats. Identities = 93/424 (21%), Positives = 161/424 (37%), Gaps = 61/424 (14%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMM---LAFQVPNLQIFRSEP----IHYRMRAEFHIWHD 54 T L Y+QQLA K D++ +M + + P + YR + EF Sbjct: 121 GCTWLDVAYDQQLAFKRDQVVDVMTRIARINDADRIVNAISPSQQRLRYRNKMEFAFAQV 180 Query: 55 GDDLY----HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLE------------- 97 GD+ + + ++ F G +L + +++A Sbjct: 181 GDNSSGRPAFGLRPAGDHTGL-VEVFTSGCVLQQVVADKVLARCAAHLHAMADVSALLPV 239 Query: 98 -------PLLRAKLFQIDYLTSQ-SDQAIVTLIYHRLLDDAWRECAIRLRDALHA----- 144 +LR+ + L + S + V +I LD +E Sbjct: 240 FNRRTGCGVLRSLTLRTAPLAGRCSGETAVMVIIAAALDRQGKETKKAFAALAADLATID 299 Query: 145 --RKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWV 202 + + +G N+ +I + + +++ R +++ SF Q N ++E V Sbjct: 300 CVQSVVHERVGDNNENQITV--LHGPATISITLRGVVFALSVKSFFQTNTKQAEILVESV 357 Query: 203 LAATK---GIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259 A +L+L+CG G F L LA V EI +VE A+ N AN + N Sbjct: 358 EEACALTGENTETILDLFCGVGTFGLCLASKARHVYGCEIVPEAVEDAKRNAVANRIENA 417 Query: 260 KIVRMSSKEFTQAMRREREFNRLKDI--DIHSYRFKTIFVDPPRSGLDDATVGMVQ--AY 315 + + +++M + K I R + VDP RSG+D V +++ Sbjct: 418 TFWQADLAQLSESMLCADSKSMSKSIVFGKDVVRPDVVIVDPARSGMDVTLVAILRSLGI 477 Query: 316 PHILYISCNPDSLCRDLSILS------------TTHTIERLALFDQFPYTRHMECGVLLV 363 P I+Y+SCNP + RD+++L + + D FP+T H+E V+L Sbjct: 478 PRIVYVSCNPATQARDVALLCDVSDNTQSGDLLAKYRLISCIPVDLFPHTPHVENIVVLE 537 Query: 364 RKPS 367 R PS Sbjct: 538 RVPS 541 >gi|153809759|ref|ZP_01962427.1| hypothetical protein RUMOBE_00140 [Ruminococcus obeum ATCC 29174] gi|149833937|gb|EDM89017.1| hypothetical protein RUMOBE_00140 [Ruminococcus obeum ATCC 29174] Length = 462 Score = 238 bits (608), Expect = 8e-61, Method: Composition-based stats. Identities = 86/403 (21%), Positives = 152/403 (37%), Gaps = 58/403 (14%) Query: 2 SGTLL-IDQYEQQLAEKVDRLRQMMLAFQVPNLQI--------------FRSEPIHYRMR 46 G + YE QL K ++R+++ V QI YR + Sbjct: 79 GGCMYQTMSYEDQLHMKEIQIRELLEEALVQGGQIDENGNAAFEWEGIHGSPIEFGYRNK 138 Query: 47 AEFHIW---HDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMA----------- 92 EF DG + T + + D + ++ + Sbjct: 139 MEFSFGDEVKDGPLSLGLHKKGSTYDILNTDDCKLVHKDMTDILTCVREFFREKGASYYR 198 Query: 93 TIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAI------RLRDALHARK 146 ++ LR + + + + +VT + ++ + R+ +H Sbjct: 199 KLQHTGYLRHLMLRRGVTSGEILVHLVTTTQEEYDLEPLKDQLLALPLEGRIVGIMHILN 258 Query: 147 YQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAAT 206 + + ++++T+I +DY E L L +R SF QPN+ + V Sbjct: 259 DSLSDVVQSDETRILYGQDYFYETLL----GLKFRISTFSFFQPNSLAAEVLYNIVRDYI 314 Query: 207 KGIQG-DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265 + G ++ +LY G G + +LA V+ VEI + +V AAR N N ++N K + Sbjct: 315 QNTSGMEVFDLYSGTGTIAQLLAPVAKEVIGVEIVEDAVAAARENAKLNGLDNCKFIAGD 374 Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISC 323 LK +D + + I +DPPR G+ + + +Y I+Y+SC Sbjct: 375 V---------------LKVLDDLTEKPDVIVLDPPRDGIHPKALPKILSYGVKRIVYVSC 419 Query: 324 NPDSLCRDL-SILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 SL RDL + L + +E+ DQF T E LLV++ Sbjct: 420 KATSLARDLEAFLQAGYRLEKACCVDQFCETVWTEAVALLVKE 462 >gi|189347986|ref|YP_001944515.1| RNA methyltransferase, TrmA family [Chlorobium limicola DSM 245] gi|189342133|gb|ACD91536.1| RNA methyltransferase, TrmA family [Chlorobium limicola DSM 245] Length = 482 Score = 238 bits (608), Expect = 8e-61, Method: Composition-based stats. Identities = 90/407 (22%), Positives = 149/407 (36%), Gaps = 61/407 (14%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-VPNLQIFRSEPI----HYRMRAEFHIWHDGD 56 L+ YE QL K ++ ++ + + P HYR + E Sbjct: 89 GCKLMHISYEAQLRYKRKKVIDDLVHIGGFTDPPVHPVLPARHSCHYRNKVELSC----S 144 Query: 57 DLYHIMFDQQTKE--------------------RMRIDYFMPGSLLIN---ALMIEMMAT 93 + ++M ++ ++E + IDY + +N L E Sbjct: 145 SIRYLMPEELSQEELSRSRDFGLGFHAPGNYEKVIDIDYCYLANEPMNSAVRLTREFALA 204 Query: 94 IRLEPL--------LRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHAR 145 RL P LR + + T + IVT + R L + + L AL + Sbjct: 205 NRLAPYAVKAHAGFLRNLVLRTSEYTGRLMVNIVTSWHDRELMARYADM---LVAALPDQ 261 Query: 146 KYQIQLIGRANKTKICLDRD----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEW 201 + K + Y + LT L +R NSF Q N+ + Sbjct: 262 DLTVVNNVTTKKNTVATGEQEFVVYGEGALTERLGELDFRVSANSFFQTNSSQAAVLYAE 321 Query: 202 VLA-ATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK 260 +L A + +LYCG G +L LARH +E+ + S+ A N N + N Sbjct: 322 ILKVAGIRPDDTVYDLYCGTGTITLYLARHCRMAAGLEVVESSLSDAAKNADLNGITNAV 381 Query: 261 IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-I 318 + K+F +L++ D I DPPR+G+ + M++ I Sbjct: 382 FFQTDLKDF------HAMLQKLENYDAPG----VIVTDPPRAGMHPKALETMLKLRARTI 431 Query: 319 LYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364 +Y+SCNP +L RD +S + + + D FP+T H+E R Sbjct: 432 VYVSCNPSNLARDGKEISRYGYRLVSVQPVDMFPHTVHVESVACFER 478 >gi|189463386|ref|ZP_03012171.1| hypothetical protein BACCOP_04105 [Bacteroides coprocola DSM 17136] gi|189429815|gb|EDU98799.1| hypothetical protein BACCOP_04105 [Bacteroides coprocola DSM 17136] Length = 489 Score = 238 bits (608), Expect = 8e-61, Method: Composition-based stats. Identities = 76/398 (19%), Positives = 145/398 (36%), Gaps = 57/398 (14%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPNLQIFRS-----EPIHYRMRAEFH------------- 50 Y+ Q+ K ++ + L F + + YR + EF Sbjct: 108 SYQDQIRYKQKQVYDNLTRIGKVELPEFMPILGSEKTMFYRNKLEFTFSNKRWLTEEEVK 167 Query: 51 --IWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----LRAK- 103 + +D + + + I+ + N + + LR++ Sbjct: 168 QDVKYDQMNAVGFHIPGAFDKVLAIEKCWLQDDISNQIRNAIRDFAYEHNYEFFDLRSQE 227 Query: 104 --LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRL---RDALHARKYQIQLIGRA-NK 157 L + TS + + +V L D + + L D + +I N Sbjct: 228 GMLRNMMVRTSSTGELMVLLQCKITSDAELDKMKVLLLFVADKFPQITSLLYVINNKCND 287 Query: 158 T------KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG 211 T ++ D++ E + L ++ SF Q N+ + L V G+ G Sbjct: 288 TIGDLDVEVFKGNDHIFEEM----EGLRFKVGPKSFYQTNSEQAYN-LYKVARNFAGLTG 342 Query: 212 D--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269 + + +LY G G + ++R +V+ +E ++E A+ N N + N K+ Sbjct: 343 NELVYDLYTGTGTIANFVSRQARKVIGIEYVPEAIEDAKVNSQINGIENTLFYAGDMKDI 402 Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDS 327 +D R I DPPR+G+ + + ++ I+Y+SCNP + Sbjct: 403 LT-----------QDFINEHGRPDVIITDPPRAGMHNDVIDVILFAEPKRIVYVSCNPAT 451 Query: 328 LCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 RDL +L + + + D FP+T H+E VLL ++ Sbjct: 452 QARDLQLLDAKYKVMAVQPVDMFPHTHHVENVVLLEKR 489 >gi|15596130|ref|NP_249624.1| 23S rRNA 5-methyluridine methyltransferase [Pseudomonas aeruginosa PAO1] gi|116048856|ref|YP_792343.1| 23S rRNA 5-methyluridine methyltransferase [Pseudomonas aeruginosa UCBPP-PA14] gi|254239284|ref|ZP_04932607.1| hypothetical protein PACG_05477 [Pseudomonas aeruginosa C3719] gi|296390713|ref|ZP_06880188.1| 23S rRNA 5-methyluridine methyltransferase [Pseudomonas aeruginosa PAb1] gi|20140268|sp|Q9I525|RUMA_PSEAE RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|122257963|sp|Q02I93|RUMA_PSEAB RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|9946837|gb|AAG04322.1|AE004527_9 probable RNA methyltransferase [Pseudomonas aeruginosa PAO1] gi|115584077|gb|ABJ10092.1| probable RNA methyltransferase [Pseudomonas aeruginosa UCBPP-PA14] gi|126171215|gb|EAZ56726.1| hypothetical protein PACG_05477 [Pseudomonas aeruginosa C3719] Length = 450 Score = 238 bits (608), Expect = 8e-61, Method: Composition-based stats. Identities = 88/374 (23%), Positives = 138/374 (36%), Gaps = 36/374 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWHDGDD 57 TL ++ +QLA K L++ + F + YR RA + D Sbjct: 99 GCTLQHLEHGEQLALKQRTLQEQLQRFAGIEPEEWAAPLVGPEFGYRRRARIAVRWDARA 158 Query: 58 LY--HIMFDQQTKERMRIDYFM---PGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTS 112 ++E + D + P I + ++ R + + Sbjct: 159 RRLDVGFRASASQEIVAFDECLVLVPPLQTIARALPALLQDFRKPESIGHVELFHGTAS- 217 Query: 113 QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLT 172 A++ L+D E RL A + Q+ L G + + + L Sbjct: 218 ----ALLLRHTTALVD----EDRQRLAAFCSAHQAQLWLQGAEQPLPVEPAAE-LGYSLG 268 Query: 173 VAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHF 231 TL YR F Q NA +N M+ L + +L+L+CG GNFSL LAR Sbjct: 269 DWQLTLAYR--PGDFVQVNAPVNESMIRQALDWLAPTADERVLDLFCGLGNFSLPLARRV 326 Query: 232 DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291 RV+ VE VE A N AN + N + + L + Sbjct: 327 ARVVGVEGVAAMVERAGANALANGLGNAHFFQADLSKA------------LAEAPWAEQG 374 Query: 292 FKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSILS-TTHTIERLALFDQ 349 F + +DPPR G +A M ++Y+SCNP +L RD ++ + ++R + D Sbjct: 375 FTAVLLDPPRDGAFEAVREMSSLGARRVVYVSCNPATLARDAGEMARQGYRLKRAGILDM 434 Query: 350 FPYTRHMECGVLLV 363 FP T H+E L Sbjct: 435 FPQTAHVEAMALFE 448 >gi|118580724|ref|YP_901974.1| RNA methyltransferase [Pelobacter propionicus DSM 2379] gi|118503434|gb|ABK99916.1| 23S rRNA m(5)U-1939 methyltransferase [Pelobacter propionicus DSM 2379] Length = 493 Score = 238 bits (608), Expect = 8e-61, Method: Composition-based stats. Identities = 83/387 (21%), Positives = 149/387 (38%), Gaps = 38/387 (9%) Query: 1 MSGTLLIDQYEQQLAEKVDRLRQMMLAF---QVPNLQIFRSEP--IHYRMRAEFHIWHDG 55 + L+ Y Q K + + + A+ L S +YR I Sbjct: 113 LGCPLIAMNYCDQAEWKRQFVLRQLDAYRGLDGIELHPLLSPRRLTNYRTTVRLTIAGKY 172 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGSLL-----------INALMIEMMATIRLEPLLRAKL 104 + Y +F + + + + + L I+ L + + + LLR + Sbjct: 173 AEPYIGIFRRSSHDVVDLCDCPIHHHLVNRVVEVVRRGISRLKVPVYSPRNRVGLLRYLV 232 Query: 105 FQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR 164 ++ + +A+V + R + A +R+ L + Q + + I Sbjct: 233 VRV---SEAEQKAMVVFVTARRSYNEIHHLARYVREQLPEVEVVAQNVNSSEGNVIMGPV 289 Query: 165 DYV---DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGN 220 D+ LT + SF Q N + E V + + +L+LYCG Sbjct: 290 DHFLTPKHHLTERIGEVSLMISPRSFLQVNRDGACLIYERVAEWARLTGRETVLDLYCGI 349 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G +L LAR RV+ VE+ + +VE AR N N ++N E Sbjct: 350 GGIALTLARRARRVIGVEVVEAAVEDARRNARMNGISNCVFQAGDVAE------------ 397 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA-YPH-ILYISCNPDSLCRDLSILST- 337 +L+++ + ++PPR G D+ + V A P +LY+SC+P +L RDL++L + Sbjct: 398 QLEELAEDGEGVDVVVLNPPRKGCDEQVLRQVAALGPRTVLYVSCSPQTLARDLNLLKSL 457 Query: 338 THTIERLALFDQFPYTRHMECGVLLVR 364 + + D FP+T H+E L + Sbjct: 458 GYVCVEVQPVDMFPHTMHVENVARLEK 484 >gi|296111231|ref|YP_003621613.1| RNA methyltransferase [Leuconostoc kimchii IMSNU 11154] gi|295832763|gb|ADG40644.1| RNA methyltransferase [Leuconostoc kimchii IMSNU 11154] Length = 458 Score = 238 bits (608), Expect = 9e-61, Method: Composition-based stats. Identities = 68/383 (17%), Positives = 140/383 (36%), Gaps = 39/383 (10%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLA---FQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHI 61 L+ +Y+ QL K +++++ + I P +YR + + L Sbjct: 90 LVNLKYQAQLELKQMQIQRLFDQRGIVSSVDSTIGMKAPSYYRNKTIVPVKWQDGHLTSG 149 Query: 62 MFDQQTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKLFQIDYL 110 + + + E + + + I+ +I + + + +R + + + Sbjct: 150 FYRRGSHELVPMTDYFVNDADIDKAIITVRDILEKYNISAFDPDIEQGAMRYIMIRRGFY 209 Query: 111 TSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQL----IGRANKTKICLDRDY 166 + + +V+ ++ + L + + + + + Sbjct: 210 SHELMVVLVSNHETIKFEENIITDICQQLPDLTSLIFNYSPKKEYVLLSPNNRTLWGSAA 269 Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSL 225 + + L + NSF Q N + + + D+ ++ Y G G + Sbjct: 270 IHDTLL----GYDFVIGPNSFYQVNPQMTEKLYDLAAQKANLKTTDVVIDAYSGIGTIGI 325 Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285 +A +VL VE+ +V A+ NI AN + N + + E +F R +D Sbjct: 326 TVANQVKQVLGVEVVPGAVADAQLNIKANKIKNATYILADAPE---------QFKRWQD- 375 Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRD-LSILSTTHTIE 342 + +FVDPPR GL + ++YISCNP +L RD + IL + + Sbjct: 376 --AGLKPDVVFVDPPRRGLTSQLIQATVDMGPDRLVYISCNPVTLARDTVEILEKGYHLS 433 Query: 343 -RLALFDQFPYTRHMECGVLLVR 364 + DQFP T H+E + + Sbjct: 434 GTILPVDQFPQTSHIESITVFKK 456 >gi|303235612|ref|ZP_07322219.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella disiens FB035-09AN] gi|302484059|gb|EFL47047.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella disiens FB035-09AN] Length = 474 Score = 238 bits (608), Expect = 9e-61, Method: Composition-based stats. Identities = 80/400 (20%), Positives = 148/400 (37%), Gaps = 63/400 (15%) Query: 9 QYEQQLAEKVDRLRQMML---AFQVPNLQIFRSE--PIHYRMRAEFHI----WHDGDDLY 59 YE+QL K ++ + +P + YR + EF W+ ++L Sbjct: 91 PYEEQLKAKQQQVIDQLTRIGKIDLPEISPIMGSAKTEEYRNKLEFGCSNKRWYTKEELA 150 Query: 60 HIMFDQQTKE-------------RMRIDYFMPGSLLINALMIEMMATIRLEPLL------ 100 + D + I+ N + + + Sbjct: 151 ELPEDAGLNQGAIGFHITGAFDKIYPIEKCFLMDNFCNKVRNAIRDFALATGMTFFDIRE 210 Query: 101 -RAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECA-IRLRDALHARKYQIQLIGRANKT 158 L I S + + +V + +H D+ E + L + + + +I + + Sbjct: 211 QHGLLRDIMMRNSNTGEWMVLIQFHY--DEEGDEMRAMALMNHVAEQFPEITALLYVDNQ 268 Query: 159 K-----------ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATK 207 K + D++ E + L ++ SF Q N H+ V A Sbjct: 269 KGNDTFNDLDLTVYKGNDHIFELM----EDLKFKVGPKSFYQTNTDQAYHLYS-VARAFA 323 Query: 208 GIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265 G+ G + +LY G G + +A+ +V+ +E ++E A+ N N + N Sbjct: 324 GLTGKELVYDLYTGTGTIANFVAKQAKQVVGIEYVPEAIEDAKINSEINEIGNTLFYAGD 383 Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISC 323 K+ D R I DPPR+G+ + + +++A+P I+Y+SC Sbjct: 384 MKDILTD-----------DFVKQHGRPDVIITDPPRAGMHNDVIDVILKAHPKRIVYVSC 432 Query: 324 NPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363 NP + RDL++LS + + + D FP+T H+E VLL Sbjct: 433 NPATQARDLALLSPDYRVVAVQPVDMFPHTPHVENVVLLE 472 >gi|253700779|ref|YP_003021968.1| RNA methyltransferase, TrmA family [Geobacter sp. M21] gi|251775629|gb|ACT18210.1| RNA methyltransferase, TrmA family [Geobacter sp. M21] Length = 438 Score = 238 bits (608), Expect = 1e-60, Method: Composition-based stats. Identities = 82/373 (21%), Positives = 142/373 (38%), Gaps = 25/373 (6%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIF---RSEPIHY--RMRAEFHIWHDGD 56 Y +QL +K + + ++ P HY R R + + Sbjct: 76 GCDWQHLPYAEQLKQKGEIFADTLARIGKVPRELVLPVSPSPEHYGYRSRIQLKVASKAG 135 Query: 57 DLYHIMFDQQTKERMRIDY-FMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115 F + + + + + + L+N ++ E+ + P L + Q+D Sbjct: 136 APSLGFFKRGSHDVVDLAVGCALAAPLLNRVLAEVRGLLPRLPQLEG-IPQVDLSMGDDG 194 Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDER----L 171 ++I + + + + R L + IG + D + L Sbjct: 195 ESIAVFHFRGKDAASLLDRLLAARPELPSVAGAYVKIGEKGEMSAVFGVDSLSYGVPAGL 254 Query: 172 TVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARH 230 R + R F+Q N N+ +++ V +G +L+LYCGNGN S+ LA Sbjct: 255 FPGSREVRLRFSRGGFSQVNYRQNLELIKTVGEWGAPREGVRVLDLYCGNGNISVPLAPL 314 Query: 231 FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY 290 V+ VE PS+ A N AN V N + + + + +E Sbjct: 315 VGEVVGVEGYAPSIVDAAANAEANGVANASYQVGDAALSVRRLAKRKE------------ 362 Query: 291 RFKTIFVDPPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILST-THTIERLALFDQ 349 +F + +DPPR+G + A + A ILY+SC+P +L RDL+ L + + R D Sbjct: 363 KFDMVVLDPPRAGAEAAGELALLAPERILYVSCDPATLARDLAQLCGAGYRVARSKPVDM 422 Query: 350 FPYTRHMECGVLL 362 FP T H+E L Sbjct: 423 FPQTYHLESVTEL 435 >gi|146300255|ref|YP_001194846.1| RNA methyltransferase [Flavobacterium johnsoniae UW101] gi|146154673|gb|ABQ05527.1| RNA methyltransferase, TrmA family [Flavobacterium johnsoniae UW101] Length = 470 Score = 238 bits (608), Expect = 1e-60, Method: Composition-based stats. Identities = 78/402 (19%), Positives = 143/402 (35%), Gaps = 54/402 (13%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFR-----SEPIHYRMRAEFHIWHD-- 54 +Y QQL K + ++ + L F + YR + EF + Sbjct: 85 GCKWQNMKYSQQLYYKQNEVKNHLQRIGKVELPEFETILGSEKQFFYRNKMEFSFSNSRW 144 Query: 55 ------------GDDLYHIMFDQQTKERM-RIDYFMPGSLLINALMIEMMATIRL----- 96 G+ + +++ I+ NA+ E+ A Sbjct: 145 LTEKEIGSTEDLGNRNALGFHIPKMWDKILDIEKCHLQEDPSNAIRNEIRAFANEHNLAF 204 Query: 97 -EPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRA 155 P + L + + + S I+ LI D A RE + + +Q + A Sbjct: 205 FNPREHSGLLRTLMIRTASTGEIMVLIQFFEDDKANRELVLDHLYEKFPQITSLQYVVNA 264 Query: 156 NKTKICLDRD--------YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATK 207 + D+D Y+ E + L + SF Q N+ L + Sbjct: 265 KQNDTIYDQDIKLYKGRNYILEEM----EGLKFSINAKSFYQTNSDQAYE-LYKITRDYA 319 Query: 208 GIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265 G+ G+ + +LY G G + +++ +V+ VE ++ A+ N N++ N + Sbjct: 320 GLTGEETVYDLYTGTGTIAQFVSKKAKKVIGVESVPEAILDAKANAERNNITNCEFFVGD 379 Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISC 323 K + + I DPPR G+ A + + A ++Y+SC Sbjct: 380 MKVVFN-----------EAFIAQHGKPDVIITDPPRDGMHAAVIDQILKIAPKKVVYVSC 428 Query: 324 NPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 N + RDL+++ + + R+ D FP T H+E VLL + Sbjct: 429 NSATQARDLALMDEKYKVTRVRPVDMFPQTHHVENVVLLELR 470 >gi|116629999|ref|YP_815171.1| tRNA (uracil-5-)-methyltransferase related enzyme [Lactobacillus gasseri ATCC 33323] gi|238853814|ref|ZP_04644180.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus gasseri 202-4] gi|311110369|ref|ZP_07711766.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus gasseri MV-22] gi|116095581|gb|ABJ60733.1| 23S rRNA m(5)U-1939 methyltransferase [Lactobacillus gasseri ATCC 33323] gi|238833623|gb|EEQ25894.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus gasseri 202-4] gi|311065523|gb|EFQ45863.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus gasseri MV-22] Length = 462 Score = 238 bits (608), Expect = 1e-60, Method: Composition-based stats. Identities = 66/387 (17%), Positives = 135/387 (34%), Gaps = 40/387 (10%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHDGDD 57 L Y +QL K + + + + + I HYR +A++ I + Sbjct: 88 LAHLSYPKQLEFKQHLILESLRKYHPRDYIKYKVKKTIPAPNDWHYRNKAQYQIEFNKGK 147 Query: 58 LYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLFQ 106 ++ ++ + + + LI+ L I + R ++ + + Sbjct: 148 SKLGLYAPNSRRLIDLPEMPTQTKETQKTEREIKKLIDKLHIRIADFRRHNDGIKTIVVR 207 Query: 107 IDYLTSQSDQAIVTL---IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD 163 T + ++T+ I L + + NKT L Sbjct: 208 QSQATGEIQVTLITIGKKIRDLKLLASQIMKLPNVVSVFQNETQWQNPQVWGNKTIKLLG 267 Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGN 222 + ++ E + ++ +F Q N + L L++ Y G G Sbjct: 268 KSHIIEEMLGK----KFKLSPRAFFQLNPEQTSTLYSEALKYLDLTPDQTLIDAYAGVGT 323 Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282 ++ + +V+ +E +V A+ N NHV N + ++ + ++ L Sbjct: 324 LGILASDQVRQVIGIESIPEAVIDAQENCHLNHVRNAEYIQGNVEKL------------L 371 Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLSILSTTHT 340 ++ + VDPPR+GL + + +Y+SCNP +L +DL +LS + Sbjct: 372 PELKNQGVPIDALIVDPPRTGLSKKLIKTLLEVKPETFVYVSCNPATLAKDLVLLSEAYD 431 Query: 341 IERLALFDQFPYTRHMECGVLLVRKPS 367 + + D P T E LV + + Sbjct: 432 VRVIQPVDMMPQTPRWEGVTKLVLRKN 458 >gi|333030806|ref|ZP_08458867.1| RNA methyltransferase, TrmA family [Bacteroides coprosuis DSM 18011] gi|332741403|gb|EGJ71885.1| RNA methyltransferase, TrmA family [Bacteroides coprosuis DSM 18011] Length = 475 Score = 238 bits (607), Expect = 1e-60, Method: Composition-based stats. Identities = 71/401 (17%), Positives = 143/401 (35%), Gaps = 59/401 (14%) Query: 9 QYEQQLAEKVDRLRQMMLAFQV-----PNLQIFRSEPIHYRMRAEFHIW----------- 52 YE Q+ K ++ + P + ++ YR + EF Sbjct: 91 PYEAQIRYKQHQIMDNLSRIGKVELPEPMPIMGSAKTTFYRNKLEFTFSDKRWLTQEEIN 150 Query: 53 ------HDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----LR- 101 + + + + I+ + + N + + + LR Sbjct: 151 LDKEFSGNQKNGLGFHIPGAFDKVLDIEKCWLQNDISNRIRNGVREFATANDISFFNLRE 210 Query: 102 --AKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAI----------RLRDALHARKYQI 149 L + TS + + +V L+ DDA + + L+ ++ Sbjct: 211 QVGVLRSLVVRTSSTGELMVILVCKVEDDDAREQMMKVMEYMGNEFSEITSLLYIINNKM 270 Query: 150 QLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGI 209 + + +D++ E + L ++ SF Q N+ L V + Sbjct: 271 NDVYTDQDVFLYKGKDHMIEEM----EGLQFKVGPKSFYQTNSEQAYE-LYKVARNFAQL 325 Query: 210 QGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267 G+ + +LY G G + +++ +V+ +E ++E A+ N NH++N K Sbjct: 326 TGEELVYDLYTGTGTIANFVSKQAKKVIGIEYVPEAIEDAKINSEINHIDNTLFYAGDMK 385 Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNP 325 + +D + I DPPR+G+ + ++ I+Y+SCNP Sbjct: 386 DILT-----------QDFINTHGQPDVIITDPPRAGMHQDVIDVLLFAEPKRIVYVSCNP 434 Query: 326 DSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRKP 366 + RDL +L + + + D FP+T H+E VLL ++ Sbjct: 435 ATQARDLQLLDNKYKVAAIQPVDMFPHTHHVENVVLLEKRN 475 >gi|153806599|ref|ZP_01959267.1| hypothetical protein BACCAC_00869 [Bacteroides caccae ATCC 43185] gi|149131276|gb|EDM22482.1| hypothetical protein BACCAC_00869 [Bacteroides caccae ATCC 43185] Length = 456 Score = 238 bits (607), Expect = 1e-60, Method: Composition-based stats. Identities = 72/399 (18%), Positives = 142/399 (35%), Gaps = 59/399 (14%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFH------------- 50 Y +Q+ K ++ + + ++ YR + EF Sbjct: 75 PYPEQIRYKQKQVEDNLRRIGKIELPEISPILGSAKTEFYRNKLEFTFSNKRWLTNEEVR 134 Query: 51 --IWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----LRAK- 103 + +D + + + I+ + N + + LR + Sbjct: 135 QDVKYDQMNAVGFHIPGAFDKVLAIEKCWLQDDISNRIRNAIRDYAYEHDYSFINLRTQE 194 Query: 104 --LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDA-----------LHARKYQIQ 150 L + TS + + +V +I ++ +D E +L L+ + Sbjct: 195 GMLRNMIVRTSSTGELMVIVIC-KITEDHEMELFKQLLQFVADSFPEITSLLYIINNKCN 253 Query: 151 LIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ 210 + D++ E + L ++ SF Q N+ + L V G+ Sbjct: 254 DTINDLDVYVFKGNDHIFEEM----EGLRFKVGPKSFYQTNSEQAYN-LYKVAREFAGLT 308 Query: 211 GD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268 G+ + +LY G G + ++R +V+ +E ++E A+ N N + N K+ Sbjct: 309 GNELVYDLYTGTGTIANFVSRRARQVIGIEYVPEAIEDAKVNAEINDIKNTLFYAGDMKD 368 Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPD 326 ++ R I DPPR+G+ V ++ I+Y+SCNP Sbjct: 369 ILT-----------QEFINEHGRPDVIITDPPRAGMHQDVVDVILFAEPKRIVYVSCNPA 417 Query: 327 SLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 + RDL +L + ++ + D FP+T H+E VLL + Sbjct: 418 TQARDLQLLDEKYKVKAVQPVDMFPHTHHVENVVLLELR 456 >gi|291549934|emb|CBL26196.1| 23S rRNA m(5)U-1939 methyltransferase [Ruminococcus torques L2-14] Length = 456 Score = 238 bits (607), Expect = 1e-60, Method: Composition-based stats. Identities = 84/395 (21%), Positives = 150/395 (37%), Gaps = 48/395 (12%) Query: 2 SGTLL-IDQYEQQLAEKVDRLRQMMLAFQVPNL----QIFRSEPIHYRMRAEFHIW---H 53 G + YE+Q+ K ++R++M + HYR + EF Sbjct: 81 GGCMYQTMPYEEQVKMKEGQIRRIMDPVVKGEYLFEGVKHSPKEFHYRNKMEFSFGDEFK 140 Query: 54 DGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLE-----------PLLRA 102 DG + T + + ++ +++ ++ + LR Sbjct: 141 DGPLSLGLHKKGSTYDVLTAGDCQLVHEDMDKILLCVLNYFKERNVSYYKKMQHVGYLRH 200 Query: 103 KLFQIDYLTSQSDQAIVTLIYHR------LLDDAWRECAIRLRDALHARKYQIQLIGRAN 156 L + T + +VT + + E ++ LH + + +++ Sbjct: 201 LLLRRGDTTGEILVNLVTTTQEEYDLTPLVEELLALELEGKIVGILHILNDSLSDVVKSD 260 Query: 157 KTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-E 215 +T+I +D+ E+L L ++ SF QPN+ + E V I ++ + Sbjct: 261 ETRILYGQDFFYEKLL----GLEFKITPFSFFQPNSKGAEVLYETVREYIGDIDNQVVFD 316 Query: 216 LYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275 L+ G G VLA +V+ VEI + +VEAA+ N N + N K + + Sbjct: 317 LFSGTGTIGQVLAPVAKKVIGVEIIEEAVEAAKENAVRNGLYNCKFIAGDVFKVL----- 371 Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLS 333 D + I +DPPR G+ + + Y I+YISC SL RDL Sbjct: 372 ----------DEIEEKPDVIVLDPPRDGIHPKALPKILNYGVDKIVYISCKMTSLARDLE 421 Query: 334 ILS-TTHTIERLALFDQFPYTRHMECGVLLVRKPS 367 ++ + +E++ DQF T H+E L R S Sbjct: 422 MMQLAGYRVEKMTAVDQFCETVHVEVVCCLHRVNS 456 >gi|227484668|ref|ZP_03914984.1| TrmA family RNA methyltransferase [Anaerococcus lactolyticus ATCC 51172] gi|227237388|gb|EEI87403.1| TrmA family RNA methyltransferase [Anaerococcus lactolyticus ATCC 51172] Length = 417 Score = 238 bits (607), Expect = 1e-60, Method: Composition-based stats. Identities = 80/373 (21%), Positives = 163/373 (43%), Gaps = 40/373 (10%) Query: 3 GTLLIDQYEQQLAEKVDRLRQMMLA---FQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLY 59 T++ +YE Q+ K + + + +++ +++I S+ + YR + + DG Y Sbjct: 77 CTIMDIKYENQIQIKKNLILSALAKSTSYKLEDIEIIPSKELRYRNKIRLQVEKDGRLAY 136 Query: 60 HIMFDQQTKERMRIDYFMPGSLLINALMIEMMA-TIRLEPLLRAKLFQIDYLTSQSDQAI 118 + + + + + I + I + ++ T + + + +I T+ +D + Sbjct: 137 NKSY---SNDLVYIKDCLLVRENIGENLGKIEEITKDISEKFKGAIKEITVRTNGTDIML 193 Query: 119 VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKI-CLDRDYVDERLTVAGRT 177 + D E +++ + K+ I +IG K I +D+++ ++ Sbjct: 194 NLDL------DNNNEPIAYIKEKYSSSKFFINIIG---KENINISGKDFLEYKICDK--- 241 Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAV 237 +R N F Q N ++ G +L+LYCG+ S+ + + DR++ V Sbjct: 242 -TFRISGNDFYQVNDFQIENLYGQAKKL-LGSGKKVLDLYCGSATSSIAI--NGDRLVGV 297 Query: 238 EIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFV 297 EI K +++ A+ N N + + K + ++K + I + ++ V Sbjct: 298 EINKNAIQDAKINAEINDLKDFKFIAKNAKYIDEKF-------------IKKEKIDSLIV 344 Query: 298 DPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILS-TTHTIERLALFDQFPYTR 354 DPPR+GLD + + I+YISCNP +L RD++ + +E++ D FP T Sbjct: 345 DPPRAGLDKDLIKSIGKSGLKEIIYISCNPQTLARDINRFEKEGYKLEKIKAVDMFPQTM 404 Query: 355 HMECGVLLVRKPS 367 H+EC L+ R S Sbjct: 405 HVECIALIQRVKS 417 >gi|331269931|ref|YP_004396423.1| RNA methyltransferase, TrmA family [Clostridium botulinum BKT015925] gi|329126481|gb|AEB76426.1| RNA methyltransferase, TrmA family [Clostridium botulinum BKT015925] Length = 450 Score = 238 bits (607), Expect = 1e-60, Method: Composition-based stats. Identities = 78/391 (19%), Positives = 146/391 (37%), Gaps = 47/391 (12%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIW--HDG 55 + YE+QL K D++ ++ + + E YR + EF G Sbjct: 79 GCSHQFLSYEKQLEIKKDQVLKLFENAGISGFEFLGIQGSPEEFEYRNKMEFTFGDMEKG 138 Query: 56 DDLYHIMFDQQTK-ERMRIDYFMPGSLLINALMIEMMAT-----------IRLEPLLRAK 103 +L M Q + D N ++ ++ + E LR Sbjct: 139 GELTLGMHAQGKSFGIISADECKIVDSDFNIILKTVLEYFRGKDLPHYRIMSHEGYLRNL 198 Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAI------RLRDALHARKYQIQLIGRANK 157 + + T +VT + E L+ LH + + +A+ Sbjct: 199 VIRKGRNTQDIMVNLVTTSQRDFDLSEFVELLKGLNYKGELKGILHTVNDSLSDVVQADS 258 Query: 158 TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-EL 216 ++ RDY+ E + L ++ SF Q N + V + ++ +L Sbjct: 259 MEVLFGRDYIMEEVL----GLKFKISPFSFFQTNTKGAEALYSIVRDFMGDAKSKVVFDL 314 Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276 YCG G + A + +V+ +E+ + + +AA N N +NN + + + + ++ Sbjct: 315 YCGTGTIGQIAAHNASKVIGIELIEEAAKAANENAKLNGLNNCEFLAGDVAKVIKDIK-- 372 Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSI 334 + I +DPPR G+ + V + I+Y+SCNP +L DL Sbjct: 373 -------------VKPDIIILDPPRPGVHPDALKYVTKFNAKDIIYVSCNPKTLVEDLKF 419 Query: 335 L-STTHTIERLALFDQFPYTRHMECGVLLVR 364 L + +E++ + D FP+T H+E V L + Sbjct: 420 LIKEGYKVEKVKIKDMFPHTPHVETVVRLSK 450 >gi|295133700|ref|YP_003584376.1| tRNA (uracil-5-)-methyltransferase [Zunongwangia profunda SM-A87] gi|294981715|gb|ADF52180.1| tRNA (uracil-5-)-methyltransferase [Zunongwangia profunda SM-A87] Length = 469 Score = 237 bits (606), Expect = 1e-60, Method: Composition-based stats. Identities = 77/396 (19%), Positives = 140/396 (35%), Gaps = 56/396 (14%) Query: 9 QYEQQLAEKVDRLR---QMMLAFQVPN--LQIFRSEPIHYRMRAEFHI----WHDGDDLY 59 Y+ QL K + + + ++P + E YR + EF W +++ Sbjct: 91 DYKYQLDYKQQEVTNNLKRLGKIELPEITPILGSKEIYFYRNKMEFSFSDSRWLTLEEIQ 150 Query: 60 HIMFDQQTK-----------ERMRIDYFMPGSLLINALM-----------IEMMATIRLE 97 + + + I NA+ I T Sbjct: 151 SGKDFEDKNALGFHIPGMWDKILDIKKCHLQEDPSNAIRNFVKIFATQNEIPFFNTRAQN 210 Query: 98 PLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRA-- 155 LLR + + T + I ++ + + + + + +Y I G Sbjct: 211 GLLRTLMIRTSS-TGEIMVLIQFFEENKTVRELLLNAVVEEFPEITSLQYVINNKGNDTI 269 Query: 156 -NKTKICL-DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD- 212 ++ IC RD++ E + L ++ SF Q N+ L + G++G+ Sbjct: 270 YDQEVICYKGRDHIFEEM----EGLTFKINAKSFYQTNSAQAYE-LYKITREFAGLKGEE 324 Query: 213 -LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271 + +LY G G + +A++ V+ VE ++ A N N + N K K+ Sbjct: 325 LVYDLYTGTGTIAQFVAKNAKEVIGVEAVPEAISDAIENAKRNGITNTKFFAGDMKKVFT 384 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLC 329 ++ I DPPR G+ V + I+Y+SCN + Sbjct: 385 -----------QNFINKHGHPDVIITDPPRDGMHKDVVAQIINILPKKIVYVSCNSATQA 433 Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 RDL++L + + ++ D FP T H+E V L RK Sbjct: 434 RDLALLDEYYKVTKVQPVDMFPQTFHVENVVCLERK 469 >gi|114567733|ref|YP_754887.1| tRNA (uracil-5-) -methyltransferase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114338668|gb|ABI69516.1| tRNA (uracil-5-) -methyltransferase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 419 Score = 237 bits (606), Expect = 1e-60, Method: Composition-based stats. Identities = 78/372 (20%), Positives = 142/372 (38%), Gaps = 37/372 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ----VPNLQIFRSEPIHYRMRAEFHIWHDGD- 56 +YE++L K ++ + V + EP HYR + +H+ G Sbjct: 73 GCAYQHAKYEEELVLKRQVVKDAIQRIAKIATVVEPVLSMPEPWHYRNKVTWHMAATGKQ 132 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRL-EPLLRAKLFQIDYLTSQSD 115 + F + +++ + I + S +N L + A + L +P +++ + S Sbjct: 133 EPVLGFFREASRQLLPISHCRLISEKMNCLTARVKALLPLIQPATGSEITLRESSLDHST 192 Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175 I + + W E L A + + T + +RL Sbjct: 193 MLIWKGLQGWPAPEIWAE--------LSAISDSV--VVIEKNTCHYISGP---QRLLDKL 239 Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVL 235 + + +F Q N M+ +L+ +L+ +CG G+ +L LAR +RV+ Sbjct: 240 GQVKFALSPGAFFQVNHCQAEEMIRLILSLVDFSGKTVLDAFCGVGSIALNLARQAERVI 299 Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295 VE +P++ AR N + NV+ + + + I Sbjct: 300 GVESYEPAIHDARSNAIEAGIYNVEFIHGFCERVVARIDEP---------------IDVI 344 Query: 296 FVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST-THTIERLALFDQFPY 352 +DPPRSG + + I+Y+SCNP +L RDL++ + + D FP Sbjct: 345 VLDPPRSGCKKELIQACSRISPREIVYVSCNPATLARDLALFGQLGYRPLLIQPIDMFPR 404 Query: 353 TRHMECGVLLVR 364 T H+E VL+ R Sbjct: 405 TYHVETVVLMSR 416 >gi|254245217|ref|ZP_04938539.1| hypothetical protein PA2G_06108 [Pseudomonas aeruginosa 2192] gi|126198595|gb|EAZ62658.1| hypothetical protein PA2G_06108 [Pseudomonas aeruginosa 2192] Length = 450 Score = 237 bits (606), Expect = 1e-60, Method: Composition-based stats. Identities = 91/375 (24%), Positives = 142/375 (37%), Gaps = 38/375 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWHDGDD 57 TL ++ +QLA K L++ + F + YR RA + D Sbjct: 99 GCTLQHLEHGEQLALKQRTLQEQLQRFAGIEPEEWAAPLVGPEFGYRRRARIAVRWDARA 158 Query: 58 LY--HIMFDQQTKERMRIDYFM---PGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTS 112 ++E + D + P I + ++ R + + Sbjct: 159 RRLDVGFRASASQEIVAFDECLVLVPPLQTIARALPALLQDFRKPESIGHVELFHGTAS- 217 Query: 113 QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLT 172 A++ L+D E RL A + Q+ L G + + + L Sbjct: 218 ----ALLLRHTTALVD----EDRQRLAAFCSAHQAQLWLQGAEQPLPVEPAAE-LGYSLG 268 Query: 173 VAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHF 231 TL YR F Q NA +N M+ L + +L+L+CG GNFSL LAR Sbjct: 269 DWQLTLAYR--PGDFVQVNAPVNESMIRQALDWLAPTADERVLDLFCGLGNFSLPLARRV 326 Query: 232 DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNRLKDIDIHSY 290 RV+ VE VE A N AN + N + SK +A+ E+ Sbjct: 327 ARVVGVEGVAAMVERAGANALANGLGNAHFFQADLSKALAEALWAEQ------------- 373 Query: 291 RFKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSILS-TTHTIERLALFD 348 F + +DPPR G +A M ++Y+SCNP +L RD ++ + ++R + D Sbjct: 374 GFTAVLLDPPRDGAFEAVREMSSLGARRVVYVSCNPATLARDAGEMARQGYRLKRAGILD 433 Query: 349 QFPYTRHMECGVLLV 363 FP T H+E L Sbjct: 434 MFPQTAHVEAMALFE 448 >gi|284054213|ref|ZP_06384423.1| 23S rRNA methyltransferase/RumA [Arthrospira platensis str. Paraca] gi|291569930|dbj|BAI92202.1| probable RNA methyltransferase [Arthrospira platensis NIES-39] Length = 461 Score = 237 bits (606), Expect = 1e-60, Method: Composition-based stats. Identities = 76/396 (19%), Positives = 137/396 (34%), Gaps = 53/396 (13%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ----VPNLQIFRSE-PIHYRMRAEFHIWHDG- 55 Y QL K + + P + S P+ YR + + + Sbjct: 82 GCQWQHIDYHFQLEAKRHLVVNALTKIGGFIEPPVAPVLPSPQPLAYRNKVTYPLRLSST 141 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLL-----------RAKL 104 + + + + + ++ +N L+ + I+ L R Sbjct: 142 GQVQAGYYQKASHRLINLNQCPVQDQHLNPLLANIKQDIQNRGWLVYNEQQHTGTIRHLS 201 Query: 105 FQIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKI 160 F+I T + +V L + + W + +L T Sbjct: 202 FRIGRRTGEILLTLVVKDNNLPQLKEQAELWLQQYPQLVGVCLNLNSDRTNTILGKNTHC 261 Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCG 219 + + Y+ E L +R ++F Q N +L + + ++L + YCG Sbjct: 262 LIGKPYIHEIFA----DLKFRLTADTFFQVNTEAAESLLSAISSELNLQGHEILVDAYCG 317 Query: 220 NGNFSLVLARHFD--------RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271 G F+L LA+ RV+ +E +VE A N N +N+V+ S K+ Sbjct: 318 IGTFTLPLAKQLGQNFPPKEIRVIGLESQAGAVEQAISNADLNDINHVQFRVGSVKQLLP 377 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLC 329 + ++ + +DPPR G D + + I+YISC P +L Sbjct: 378 KI---------------PFKPDIVVLDPPRQGCDRTVIQTLLNLQPQRIVYISCRPVTLA 422 Query: 330 RDLSILSTT--HTIERLALFDQFPYTRHMECGVLLV 363 RDL +L + + ++ D FP T H+EC L Sbjct: 423 RDLQLLCENGIYQLTKVQPVDFFPQTSHVECAAFLT 458 >gi|227538859|ref|ZP_03968908.1| TrmA family RNA methyltransferase [Sphingobacterium spiritivorum ATCC 33300] gi|227241368|gb|EEI91383.1| TrmA family RNA methyltransferase [Sphingobacterium spiritivorum ATCC 33300] Length = 469 Score = 237 bits (606), Expect = 1e-60, Method: Composition-based stats. Identities = 80/400 (20%), Positives = 145/400 (36%), Gaps = 52/400 (13%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVP-----NLQIFRSEPIHYRMRAEFHIWH--- 53 Y QL K + ++ + E +YR + E+ + Sbjct: 85 GCKWQHMDYNGQLKFKQQTVDNVLARIGKVDTSLMEPILGSGETEYYRNKLEYTFSNKRW 144 Query: 54 ----DGDDLYHIMFDQQTK------ERMRIDYFMPGSLLINALMIEMMATIRLEPL---- 99 D + M + + ID+ NA+ + A + Sbjct: 145 LTSVDDANEGLEMNALGFHVPGRFDKILDIDHCYLQQDPSNAIRNHIRAFAIKHQISFYD 204 Query: 100 LRAK---LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRAN 156 LR L + T+ + + +V +++ + + + + +I + Sbjct: 205 LREHAGALRNLIIRTASTGELMVIVVFAYPEEGQVDLLMNDINSSFPDIDSLLYIINQKK 264 Query: 157 -------KTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGI 209 I RD++ E + L Y+ SF Q N+ L + G+ Sbjct: 265 NDTIFDQDIHIFKGRDFIYEEM----EGLKYKIGPKSFYQTNSLQAYE-LYKITREFAGL 319 Query: 210 QGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267 GD + +LY G G + +A+ V+ VE ++E A+ N A N + N K K Sbjct: 320 TGDELVYDLYTGAGTIANFVAKTAREVIGVEYVPTAIEDAKINSAINQIGNTKFYAGDMK 379 Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNP 325 + A D + + DPPR+G+ V + I+Y+SCN Sbjct: 380 DVLTA-----------DFIAEHGKPDVVITDPPRAGMHGDVVQRLLEMEADKIVYVSCNA 428 Query: 326 DSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 + RDL++L+ +T++R+ D FP+T+H+E VLL K Sbjct: 429 ATQARDLALLNEKYTVDRIKPVDMFPHTQHVENVVLLKLK 468 >gi|330719374|ref|ZP_08313974.1| 23S rRNA (uracil-5-)-methyltransferase [Leuconostoc fallax KCTC 3537] Length = 460 Score = 237 bits (606), Expect = 1e-60, Method: Composition-based stats. Identities = 76/386 (19%), Positives = 145/386 (37%), Gaps = 43/386 (11%) Query: 9 QYEQQLAEKVDRLRQMMLAFQV---PNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ 65 Y QL K +++ + + + ++P +YR + L F + Sbjct: 94 SYTAQLEWKRQKVQTLFEKANINVNVAETVGMAQPSYYRNKTIVPTKWQNQQLQTGFFKR 153 Query: 66 QTKERMRIDYFMPGSLLINALMIEMMATIR-----------LEPLLRAKLFQIDYLTSQS 114 T E + + + I+ ++ + + E +R + + Y + + Sbjct: 154 GTHELVPMTDYFVNDRKIDEAIVIVRNVLENYQISAFDPDTQEGAIRYIMVRRGYYSHEL 213 Query: 115 DQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDER 170 +V+ L++ + + +E L+ + + + + + + + Sbjct: 214 MVVLVSNQAELVHEQQIIRDLQEQLPELKSLIFNYSPKKDYVLLSPHNRTLWGEAAIHDT 273 Query: 171 LTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLAR 229 L L + NSF Q N + + + D +++ Y G G + +A Sbjct: 274 LL----GLDFIIGPNSFYQVNPIMTEKLYTLAAQKAQLKPTDIVIDAYSGIGTIGISVAN 329 Query: 230 HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHS 289 +VL VE+ +V A+ N+ NH++N + + E + Sbjct: 330 KVKQVLGVEVVAGAVADAQLNVDTNHIDNATFLLNDAPEQMALWQE------------QG 377 Query: 290 YRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRD-LSILSTTHTIE-RLA 345 + IFVDPPR GL + + V A +YISCNP +L RD IL+ + IE + Sbjct: 378 IKPDVIFVDPPRRGLTKSLIDSVADMAPKRFVYISCNPVTLVRDTAEILTKGYHIEGDVQ 437 Query: 346 LFDQFPYTRHMECGVLLVRKPSGWHQ 371 DQFP T H+E V+ R H+ Sbjct: 438 TVDQFPQTSHIETIVVFTR----HHE 459 >gi|218893098|ref|YP_002441967.1| 23S rRNA 5-methyluridine methyltransferase [Pseudomonas aeruginosa LESB58] gi|218773326|emb|CAW29138.1| probable RNA methyltransferase [Pseudomonas aeruginosa LESB58] Length = 450 Score = 237 bits (606), Expect = 2e-60, Method: Composition-based stats. Identities = 88/374 (23%), Positives = 138/374 (36%), Gaps = 36/374 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWHDGDD 57 TL ++ +QLA K L++ + F + YR RA + D Sbjct: 99 GCTLQHLEHGEQLALKQRTLQEQLQRFAGIEPEEWAAPLVGPEFGYRRRARIAVRWDARA 158 Query: 58 LY--HIMFDQQTKERMRIDYFM---PGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTS 112 ++E + D + P I + ++ R + + Sbjct: 159 RRLDVGFRASASQEIVAFDECLVLVPPLQTIARALPALLQDFRKPESIGHVELFHGTAS- 217 Query: 113 QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLT 172 A++ L+D E RL A + Q+ L G + + + L Sbjct: 218 ----ALLLRHTTALVD----EDRQRLAAFCSAHQAQLWLQGAEQPLPVEPAAE-LGYSLG 268 Query: 173 VAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHF 231 TL YR F Q NA +N M+ L + +L+L+CG GNFSL LAR Sbjct: 269 DWQLTLAYR--PGDFVQVNAPMNESMIRQALDWLAPTADERVLDLFCGLGNFSLPLARRV 326 Query: 232 DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291 RV+ VE VE A N AN + N + + L + Sbjct: 327 ARVVGVEGVAAMVERAGANALANGLGNAHFFQADLSKA------------LAEAPWAEQG 374 Query: 292 FKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSILS-TTHTIERLALFDQ 349 F + +DPPR G +A M ++Y+SCNP +L RD ++ + ++R + D Sbjct: 375 FTAVLLDPPRDGAFEAVREMSSLGARRVVYVSCNPATLARDAGEMARQGYRLKRAGILDM 434 Query: 350 FPYTRHMECGVLLV 363 FP T H+E L Sbjct: 435 FPQTAHVEAMALFE 448 >gi|222617909|gb|EEE54041.1| hypothetical protein OsJ_00721 [Oryza sativa Japonica Group] Length = 558 Score = 237 bits (606), Expect = 2e-60, Method: Composition-based stats. Identities = 75/434 (17%), Positives = 150/434 (34%), Gaps = 89/434 (20%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEP--------------IHYRMRA 47 Y Q+ K ++R++++ F + + S YR + Sbjct: 140 GCKAQSLAYAAQIRHKHLQVRELLVNFGKFDPRKMESSEPDAILKPIVPCDEIFRYRNKM 199 Query: 48 EFHI---------WHDGDDLYHIM--------FDQQTK------ERMRIDYFMPGSLLIN 84 EF W + D + + + + ++ + S + Sbjct: 200 EFSFGTKRWMQREWKEEKDDEVVKEEKVEGDGYSLGLHAPGFFDKVLHVEKCLLQSEPAD 259 Query: 85 ALMIEMMATIRLEPL-------------LRAKLFQID-YLTSQSDQAIV---TLIYHRLL 127 ++ + T L L+ + + +T+ + + +V T Y L Sbjct: 260 KVLAIVQETWLDPALGLTPYDVHKHVGFLKHLMIRTGRNITTGAPEVMVNFVTSCYKPEL 319 Query: 128 DDAWRECAIRLRD---ALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + ++ + ++ + + + + E L R L ++ Sbjct: 320 LEPLVNNITKIPEVVSIMNNVNTSVGNTSVGEEEYTLYGKPTITEML----RGLTFQISA 375 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD----LLELYCGNGNFSLVLARHFDRVLAVEIA 240 NSF Q N +L ++ + G++GD +L+L+CG G L LAR V E+ Sbjct: 376 NSFFQTNTKQAD-VLYKLIGESAGLKGDGSEIILDLFCGTGTIGLTLARRAKHVYGYEVV 434 Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300 ++ A+ N N ++N V+ + + +E + I DP Sbjct: 435 PEAIADAKKNAKLNGISNATFVQGDLNKINETFGKEF------------PKPDIIISDPN 482 Query: 301 RSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTT---------HTIERLALFDQ 349 R G+ + + P I+Y+SCNP + RDL L + ++ + D Sbjct: 483 RPGMHMKLIKWLLEVKAPRIVYVSCNPATCARDLDYLCHGVEEKDLKGCYELKTVIPVDM 542 Query: 350 FPYTRHMECGVLLV 363 FP+T H+EC +L Sbjct: 543 FPHTPHIECICVLE 556 >gi|86132735|ref|ZP_01051327.1| RNA methyltransferase, TrmA family [Dokdonia donghaensis MED134] gi|85816689|gb|EAQ37875.1| RNA methyltransferase, TrmA family [Dokdonia donghaensis MED134] Length = 471 Score = 237 bits (606), Expect = 2e-60, Method: Composition-based stats. Identities = 70/399 (17%), Positives = 134/399 (33%), Gaps = 48/399 (12%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQ---MMLAFQVPN--LQIFRSEPIHYRMRAEFHI----W 52 Y+ QL K + + ++P E YR + EF W Sbjct: 85 GCKWQHMDYKYQLEYKQQEVVNNLTRLGKIELPEVTPIAGSKEQYFYRNKMEFGFSDSKW 144 Query: 53 HDGDDLYHIMFDQQTK-----------ERMRIDYFMPGSLLINALMIEMMATIRLEPL-- 99 + + + + + I+ NA+ + + Sbjct: 145 LTLEQIKSGEMIEDRNALGFHIAGMWDKILDIEKCHLQRDPSNAIRNGIKEFATANDMAF 204 Query: 100 -----LRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGR 154 L + TS + + +V L+ D RE + + + Sbjct: 205 YNARNQEGLLRTLMIRTSTTGELMV-LVQFYKEDVQKRELLLNYIKDTFTEVTSLLYVIN 263 Query: 155 ANKTKICLDRDYV----DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ 210 D++ + + + L ++ SF Q N+ L + G+ Sbjct: 264 GKGNDTIYDQEVICYAGRDHIFEEMEGLKFKINAKSFYQTNSEQAYE-LYKITRDFAGLT 322 Query: 211 GD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268 G+ + +LY G G + +A+ +V+ VE ++ AA+ N N + N + K+ Sbjct: 323 GNELVYDLYTGTGTIAQFVAKKAKKVIGVEAVPDAITAAKENAKLNGIENAEFFVGDMKK 382 Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPD 326 + + I DPPR G+ V + + I+Y+SCN Sbjct: 383 VFNS-----------EFIATHGEPDIIITDPPRDGMHKDVVDQILNISPQKIVYVSCNSA 431 Query: 327 SLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 + RDL++L + + ++ D FP T H+E VLL ++ Sbjct: 432 TQARDLALLDDVYKVTKVQPVDMFPQTHHVENVVLLEKR 470 >gi|323499990|ref|ZP_08104946.1| 23S rRNA m(5)U1939 methyltransferase [Vibrio sinaloensis DSM 21326] gi|323314956|gb|EGA68011.1| 23S rRNA m(5)U1939 methyltransferase [Vibrio sinaloensis DSM 21326] Length = 439 Score = 237 bits (606), Expect = 2e-60, Method: Composition-based stats. Identities = 87/372 (23%), Positives = 152/372 (40%), Gaps = 32/372 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRS---EPIHYRMRAEFHIWHDGDDL 58 + QQ K LRQ++ F N + YR RA + D Sbjct: 90 GCNMQHLNVAQQREHKQQTLRQLVRKFAGHNADLDAPIIGSDKGYRRRARISVMLDKKSR 149 Query: 59 Y--HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116 +Q+K+ + + +N L+ + + L ++ + +++ Sbjct: 150 QLKFGFRKKQSKDIVDVTDCPVLDQSLNQLLPGLKKLLDGF-ANPESLGHVELVKGDNNR 208 Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANK-TKICLDRDYVDERLTVAG 175 IV R L + L + + L+ +++ +I ++ Y E AG Sbjct: 209 VIVL----RHLKALAEKDQSALEAFATEHQACLYLMPESDRLERIVGEQAYYLE----AG 260 Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRV 234 T+ + N+F Q N +N M+E L Q +L+L+CG GNFSL +A+ RV Sbjct: 261 VTIPFE--PNNFIQVNQQVNQSMVEQALDWLALDKQDRVLDLFCGLGNFSLPMAKRVKRV 318 Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294 + VE VE AR N NH+ N + + ++ + S +F Sbjct: 319 VGVEGVDAMVEKARTNAELNHLGNAHFFQANLEQ------------EMSGQPWASEKFDK 366 Query: 295 IFVDPPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPY 352 I +DP R+G + + ++Y+SCNP +L RD S+L+ +++L + D FP+ Sbjct: 367 ILLDPARAGASGIVEQLSELGATRVVYVSCNPATLARDSQSLLNQGFHLKKLGMLDMFPH 426 Query: 353 TRHMECGVLLVR 364 T H+E L V+ Sbjct: 427 TSHLESMALFVK 438 >gi|127512133|ref|YP_001093330.1| 23S rRNA 5-methyluridine methyltransferase [Shewanella loihica PV-4] gi|126637428|gb|ABO23071.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Shewanella loihica PV-4] Length = 444 Score = 237 bits (606), Expect = 2e-60, Method: Composition-based stats. Identities = 86/372 (23%), Positives = 142/372 (38%), Gaps = 31/372 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEP-----IHYRMRAEF--HIWHD 54 L + Q K L ++ Q SEP HYR RA D Sbjct: 91 GCDLQHLELSAQRDAKQTALENLINKMGRTQPQT-MSEPLSGEGWHYRRRARLATQYLRD 149 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQS 114 L + E + ID + ++ L+ + + R+ L ++ L+ S Sbjct: 150 TKQLNLGFRALASSEVVNIDACPVLAKSLSELIAPLNQCLNRLSAKRS-LGHVELLSVDS 208 Query: 115 DQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVA 174 +V I L D + L K ++ L+ +K + + + Sbjct: 209 GPCVVLRITSPLND----KDKALLATFGEQHKVRLVLLDDDSKLETLWGDEGLPYYTLED 264 Query: 175 GRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDR 233 G +L + +F Q N IN M+ + + G+ +L+L+CG GNF+L LA+ + Sbjct: 265 GSSLGF--SPGNFIQVNGEINQQMVTQAIDWLQIQPGERVLDLFCGVGNFTLPLAKAGAQ 322 Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293 V+ VE V AR N + V + + + R+ Sbjct: 323 VVGVEGVDAMVAQARVNATMSGVEGAEFYHGD---LSADLSAAPWLGRI----------D 369 Query: 294 TIFVDPPRSGLDDATVGMVQAYPH-ILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFP 351 + +DP R+G ++ + + P I+YISCNP SL RD +L+ + + RL L D FP Sbjct: 370 KLLLDPARAGAYESLQWLKKMKPKAIVYISCNPVSLARDCEPLLAQGYQLSRLGLIDMFP 429 Query: 352 YTRHMECGVLLV 363 T H+E L Sbjct: 430 QTHHIEAMALFE 441 >gi|167762843|ref|ZP_02434970.1| hypothetical protein BACSTE_01201 [Bacteroides stercoris ATCC 43183] gi|167699183|gb|EDS15762.1| hypothetical protein BACSTE_01201 [Bacteroides stercoris ATCC 43183] Length = 480 Score = 237 bits (605), Expect = 2e-60, Method: Composition-based stats. Identities = 77/399 (19%), Positives = 143/399 (35%), Gaps = 57/399 (14%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFHIWHDG-------- 55 Y +Q+ K ++ + + ++ YR + EF + Sbjct: 91 PYSEQIRYKQKQVTDNLTRIGKVELPEISPILGSAKTEFYRNKLEFTFSNKRWLTAEEVR 150 Query: 56 -DDLYHIMFDQQTK------ERMRIDYFMPGSLLINALMIEMMATIRLEPL----LRAK- 103 + +Y M + + I+ + N + + LR Sbjct: 151 QNVVYEQMNAVGFHIPNAFDKVLAIEKCWLQDDISNRIRNAVRDYAYEHNYPFINLRTHE 210 Query: 104 --LFQIDYLTSQSDQAIVTLIYHRLLDDAW---RECAIRLRDALHARKYQIQLIGRA-NK 157 L + TS + + +V LI D+ ++ + D + +I N Sbjct: 211 GMLRNMIVRTSTTGELMVILICKIEKDEEMELFKQLLQYVADTFPEITSLLYIINNKCND 270 Query: 158 TKICL------DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG 211 T L +D++ E + L ++ SF Q N+ + L V G+ G Sbjct: 271 TITDLDVHTFKGKDHIFEEM----EGLRFKVGPKSFYQTNSEQA-YTLYKVARNFAGLTG 325 Query: 212 D--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269 + + +LY G G + ++ +V+ +E ++E A+ N N + N K+ Sbjct: 326 NELVYDLYTGTGTIANFVSGQARQVIGIEYVPEAIEDAKVNSEINGIRNTLFFAGDMKDM 385 Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDS 327 +D R I DPPR+G+ V ++ I+Y+SCNP + Sbjct: 386 LT-----------QDFINEYGRPDVIITDPPRAGMHQDVVDVILFAEPKRIVYVSCNPAT 434 Query: 328 LCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRKP 366 RDL +L + ++ + D FP+T H+E VLL K Sbjct: 435 QARDLQLLDAKYRVKAVQPVDMFPHTHHVENVVLLELKN 473 >gi|90580331|ref|ZP_01236138.1| 23S rRNA (uracil-5-)-methyltransferase [Vibrio angustum S14] gi|90438633|gb|EAS63817.1| 23S rRNA (uracil-5-)-methyltransferase [Vibrio angustum S14] Length = 450 Score = 237 bits (605), Expect = 2e-60, Method: Composition-based stats. Identities = 83/382 (21%), Positives = 151/382 (39%), Gaps = 38/382 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQV--------PNLQIFRSEPIHYRMRAEFHIWH 53 L ++ Q+ K L ++M F + + +SE HYR A F + Sbjct: 89 GCNLQHLSHQGQVIAKQQALSELMAKFAITEKDDAAQVEPIVGQSE--HYRRCARFSVRM 146 Query: 54 -DGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTS 112 + +Q+K+ + ++ + +N L+ + + + + I+ + + Sbjct: 147 LPNGKMVFGFRKKQSKDIVDVNACPVLATTLNDLLPPLRELLSNLKGRKH-VGHIELVNA 205 Query: 113 QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLT 172 + + ++ R L ++ + L +++ L E+ Sbjct: 206 DNGRVLLI----RHLQPFNDNDLAAIKAFATEHALMLFLAPSSDELDHVLG-----EQPY 256 Query: 173 VAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHF 231 + F Q N +NV M+E + Q +L+L+CG GNFSL LAR Sbjct: 257 YDIDDVRLTFSPKDFIQVNRDVNVKMVEQAINWLDIQPQDRVLDLFCGLGNFSLPLARRA 316 Query: 232 DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291 V+ VE V A N AAN ++N + + E + +E + Sbjct: 317 KAVVGVEGVDEMVARATANAAANGLDNATFYQANLDEDVTKLVWAQE------------Q 364 Query: 292 FKTIFVDPPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDLS-ILSTTHTIERLALFDQ 349 F I +DP R+G +V P ++Y+SCNP +L RD +L + + RL + D Sbjct: 365 FDKILLDPARAGAAGVMQHIVNLAPSKVVYVSCNPATLARDSQMLLQQGYKLARLGMMDM 424 Query: 350 FPYTRHMECGVLLVRKPSGWHQ 371 FP+T H+E L V+ + H+ Sbjct: 425 FPHTGHLESMTLFVK--TNHHK 444 >gi|258648401|ref|ZP_05735870.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella tannerae ATCC 51259] gi|260851571|gb|EEX71440.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella tannerae ATCC 51259] Length = 473 Score = 237 bits (605), Expect = 2e-60, Method: Composition-based stats. Identities = 73/398 (18%), Positives = 145/398 (36%), Gaps = 52/398 (13%) Query: 4 TLLIDQYEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFHI----WHD 54 L YE+QL K ++ + + I + YR + EF W Sbjct: 89 CLP---YEEQLKAKQQQVEDALARIGKVSFPNISPIIGSKKTKAYRNKLEFGFSNKKWLT 145 Query: 55 GDDLYHIMFDQQTK-----------ERMRIDYFMPGSLLINALMIEMMATIRLEPL---- 99 +++ + + + + N + + + I + Sbjct: 146 KEEIESRVVFPDMNAVGFHIPGAFDKILDLKECFLMDDFNNRIRNGLRSYIIEKGYSFFD 205 Query: 100 LR---AKLFQIDYLTSQSDQAIVTL---IYHRLLDDAWRECAIRLRDALHARKYQIQLIG 153 LR L + + + + +V L I + ++ ++ + + Sbjct: 206 LRNQTGLLRNMMLRKTSTGEIMVLLQFSIREAQEEKEAQDVLQWIKTTFPEITSLLYVNN 265 Query: 154 RA-NKT--KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ 210 N T + + + + L ++ SF Q N+ L V+ + Sbjct: 266 TKCNDTISDLDIHTYSGTDCIYEQMEDLQFKIGPKSFYQTNSEQAFT-LYKVVREFANLS 324 Query: 211 GD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268 G+ + +LY G G + +A RV+ +E +++ A+ N N+++N++ K+ Sbjct: 325 GNEYVYDLYTGTGTIANFIAGKAKRVIGIEYVPEAIKDAKENAVLNNLDNIQFFAGDMKD 384 Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPD 326 D R I DPPR+G+ + + + A I+Y+SCNP Sbjct: 385 ILTD-----------DFVALYGRPDVIITDPPRAGMHNDVISTILFAAPKRIVYVSCNPA 433 Query: 327 SLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 + RD+S+LST + I ++ D FP T H+E +L+ R Sbjct: 434 TQARDVSLLSTDYHITKVQPVDMFPQTHHVENVLLMER 471 >gi|161507161|ref|YP_001577115.1| RNA methyltransferase family protein [Lactobacillus helveticus DPC 4571] gi|260102926|ref|ZP_05753163.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus helveticus DSM 20075] gi|160348150|gb|ABX26824.1| RNA methyltransferase family protein [Lactobacillus helveticus DPC 4571] gi|260083270|gb|EEW67390.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus helveticus DSM 20075] Length = 460 Score = 237 bits (605), Expect = 2e-60, Method: Composition-based stats. Identities = 75/386 (19%), Positives = 142/386 (36%), Gaps = 40/386 (10%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNL-------QIFRSEPIHYRMRAEFHIWHDGDD 57 L YE+QL K + + + + + N I + HYR +A++ I + Sbjct: 91 LAHLSYEKQLEFKRNNMLESLRKYHPRNYAKYKVKKTIPAPDEWHYRNKAQYQIENIHGK 150 Query: 58 LYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLFQ 106 +F + + + S LI L + + R P ++ + + Sbjct: 151 TKLGLFAPNSHRLIDLPKMPTQSEDTQKTEREIKVLIEKLHVPVANFRRHLPGVKTIVVR 210 Query: 107 IDYLTSQSDQAIVTLIYH-RLLDDAWRECAI--RLRDALHARKYQIQLIGRANKTKICLD 163 T + ++T+ + + L +E + NKT+ L Sbjct: 211 QSEATKEIQVTLITIGHKIKNLIPLAKEIMKLDNVVSVYQNETEWQNPQVWGNKTEKLLG 270 Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGN 222 ++ + E + L +F Q N V++ L L++ Y G G Sbjct: 271 KNQIMEEILGKKFAL----SPRAFFQLNPVQTVNLYSEALKYLDLTPDQTLIDAYSGVGT 326 Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282 ++ A +V+ +E +V+ A++N+ NH+ N ++ S ++ L Sbjct: 327 LGILAADRVKQVIGIETIPEAVKDAQHNVELNHIKNADYIQGSVEKV------------L 374 Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLSILSTTHT 340 ++ + VDPPR+GL + + +YISCNP +L +DL +LS + Sbjct: 375 PELKNSGVSIDALIVDPPRTGLAKKLIKTLLQVKPETFVYISCNPSTLAQDLVLLSEVYD 434 Query: 341 IERLALFDQFPYTRHMECGVLLVRKP 366 I + D P T E LV + Sbjct: 435 IRVIQNVDMLPQTPRCEAIAKLVLRK 460 >gi|120436238|ref|YP_861924.1| tRNA (uracil-5-)-methyltransferase [Gramella forsetii KT0803] gi|117578388|emb|CAL66857.1| tRNA (uracil-5-)-methyltransferase [Gramella forsetii KT0803] Length = 469 Score = 237 bits (605), Expect = 2e-60, Method: Composition-based stats. Identities = 76/406 (18%), Positives = 148/406 (36%), Gaps = 62/406 (15%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQ---MMLAFQVPN--LQIFRSEPIHYRMRAEFHI----W 52 +Y+ QL K D + + ++P + E YR + EF W Sbjct: 84 GCKWQNMEYKFQLEYKQDEVENNLRRLGKIELPEITPILGSEEIYFYRNKMEFSFSDSRW 143 Query: 53 HDGDDLYHIMFDQQTK-----------ERMRIDYFMPGSLLINALM-----------IEM 90 +++ QQ + + I+ + NA+ + Sbjct: 144 LTQEEIQSGEDIQQRNALGFHIPGMWDKILDIEKCHLQADPSNAIRNFVKEFAIENDLAF 203 Query: 91 MATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQ 150 T E LLR + + T+ + + ++ + + + + L + Sbjct: 204 FNTRNQEGLLRTLMIR----TTSTGEIMILVQFFKEDQEKRELLLNALAEKFPEITSLQY 259 Query: 151 LIGRA------NKTKICL-DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL 203 ++ ++ IC RD++ E + L ++ SF Q N+ + L + Sbjct: 260 VVNTKANDTIYDQEVICFKGRDHIFEEM----EGLKFKINAKSFYQTNSEQAYN-LYKIT 314 Query: 204 AATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261 ++GD + +LY G G + +A++ +V+ VE +++ A+ N N + NV+ Sbjct: 315 RDYANLKGDELVYDLYTGTGTIAQFVAKNAKKVIGVEAVPEAIKDAKENAERNKIQNVEF 374 Query: 262 VRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHIL 319 K+ + I DPPR G+ V + I+ Sbjct: 375 YVGDMKKVFT-----------ESFINKHGHPDVIITDPPRDGMHKDVVAQIIGILPERIV 423 Query: 320 YISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 Y+SCN + RDLS+L + + ++ D FP T H+E V L ++ Sbjct: 424 YVSCNSATQARDLSLLDEHYKVTQIQAVDMFPQTHHVENVVCLEKR 469 >gi|256826666|ref|YP_003150625.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Cryptobacterium curtum DSM 15641] gi|256582809|gb|ACU93943.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Cryptobacterium curtum DSM 15641] Length = 543 Score = 237 bits (604), Expect = 2e-60, Method: Composition-based stats. Identities = 77/438 (17%), Positives = 148/438 (33%), Gaps = 94/438 (21%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLA----FQVPNLQIFRSEPIHYRMRA--EF------ 49 + + + Y QL K + ++ I +P +R + F Sbjct: 117 GCSHIEEPYAHQLKRKQYFIAELFADEIKAGCTLEPIIGMEDPFGFRNKIASPFAPVRSS 176 Query: 50 ----HIWHDGDD--------------------------------LYHIMFDQQTKERMRI 73 + H + + ++ T +R Sbjct: 177 RTGKRVRHTKSGDATLQQDTAARQRKTSVNSLSRSRSTSSAVSSMRYGLYAAGTHRLIRA 236 Query: 74 DYFMPGSLL---INALMIEMMATIRLEPL--------LRAKLFQIDYLTSQSDQAIVTLI 122 D + + A ++M + P +R + ++ + +SD+ +VTL+ Sbjct: 237 DKCPVEHPIGRRVVAATAQLMRKWDIAPYDEDAGTGFMRHVIVRVGH---ESDEVLVTLV 293 Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGR-------ANKTKICLDRDYVDERLTVAG 175 + + + + A L+ +Q + + ++ ++ + L Sbjct: 294 TNGKVFPSGKNFARHLKKHCPEITTVVQNVNMRSTNAIFGGEEQVLYGPGFILDTLC--- 350 Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD----LLELYCGNGNFSLVLARHF 231 L +R +SF Q NA + L +L+ YCG G LV A Sbjct: 351 -GLSFRISSHSFYQVNAVQTEVLYRTALEMAACTSSHQALTILDAYCGTGTIGLVAASQV 409 Query: 232 --DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHS 289 +V+ ++ A S+ AR N N + N + + +F L S Sbjct: 410 PNSQVIGIDNASSSIRDARQNAVHNGIANATFLCEDATDF------------LLHRAAAS 457 Query: 290 YRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILS-TTHTIERLAL 346 + +DPPR+G + A ++YISCNP + RD+ + + + + RL Sbjct: 458 DSIDVLMMDPPRAGSTSEFIEAACALAPERVVYISCNPATQKRDVRLFARGGYHLVRLRA 517 Query: 347 FDQFPYTRHMECGVLLVR 364 D FP+T H+E LL+R Sbjct: 518 VDMFPHTDHIETVALLMR 535 >gi|212634201|ref|YP_002310726.1| 23S rRNA 5-methyluridine methyltransferase [Shewanella piezotolerans WP3] gi|226725392|sp|B8CJP2|RUMA_SHEPW RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|212555685|gb|ACJ28139.1| RNA methyltransferase, TrmA family [Shewanella piezotolerans WP3] Length = 445 Score = 237 bits (604), Expect = 2e-60, Method: Composition-based stats. Identities = 82/372 (22%), Positives = 143/372 (38%), Gaps = 30/372 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL----QIFRSEPIHYRMRAEFHIWHDGDD 57 L E Q A K L++++ F + P HYR RA W D Sbjct: 91 GCDLQHLNVESQRAHKAKALQELVAKFAQTTASQVCETLSDSPWHYRRRARLATWFDKKT 150 Query: 58 LYH--IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115 + + + + I + + ++AL+ E+ A + + + L ++ LT + Sbjct: 151 KHISLGFRASSSSDVVEIQSCVVLAKPLSALIPEL-AFLLNQLSGKKALGHVE-LTLADN 208 Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175 V L + L D + RL + + + L T+ + Sbjct: 209 GIFVVLRVTKALSD---KDRQRLAEFGASHSLNMLLQDDDANTESLSGHGQ-QPFYSFND 264 Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRV 234 + +F Q NA +N M+ + + +L+L+CG GNFSL LA+ V Sbjct: 265 SDAELKFSAGNFIQVNASVNQAMVNQAVDWLAPQANERVLDLFCGIGNFSLPLAKSGAEV 324 Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNRLKDIDIHSYRFK 293 + VE VE A N ++ V S + +Q + Sbjct: 325 IGVEGVPAMVEQATVNAKGAALDKVSFYHADLSADLSQQPW--------------LGKVD 370 Query: 294 TIFVDPPRSGLDDATVGMVQAYPH-ILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFP 351 + +DP R+G ++ + + + P ++Y+SCNP SL RD IL + + ++A+ D FP Sbjct: 371 KMLIDPARAGAYESMLSLKKLKPQALVYVSCNPASLARDSEVILKQGYRLTKIAMVDMFP 430 Query: 352 YTRHMECGVLLV 363 T H+E L Sbjct: 431 QTHHLESMALFE 442 >gi|332879258|ref|ZP_08446955.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332682678|gb|EGJ55578.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 491 Score = 237 bits (604), Expect = 2e-60, Method: Composition-based stats. Identities = 76/399 (19%), Positives = 142/399 (35%), Gaps = 52/399 (13%) Query: 4 TLLIDQYEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFHIWHDG--- 55 L YE+QL K ++ + + + YR + EF + Sbjct: 107 CLP---YEEQLKYKQQQVLDNLTRIGKVELDGIQPILGSVKTEEYRNKLEFGFSNKRWLT 163 Query: 56 -----------DDLYHIMFDQQTKERM-RIDYFMPGSLLINALMIEMMATIRLEPLL--- 100 + + +++ I+ + N + + L Sbjct: 164 PEEIASGNAYTQNGAVGFHTSGSFDKILPIEQCRLMDDINNRIRNAIRDYGYEHQLTFHD 223 Query: 101 ---RAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANK 157 A L + + + + ++ L+ + DD + A L L +I + N Sbjct: 224 QREHAGLLRNMMIRNSNTGELMLLMQFCITDDTEKAQAEALMGYLAETFPEITSLLYVNN 283 Query: 158 TK---ICLDRDYVD----ERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ 210 K D D + + + + L ++ SF Q N L V G+ Sbjct: 284 LKYNDTIGDLDVITFRGNDHIYLQMENLRFKVGPKSFYQTNTDQAYE-LYKVARDFAGLT 342 Query: 211 GD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268 G + +LY G G + +A +V+ +E ++E A+ N N + N K+ Sbjct: 343 GTELVYDLYTGTGTIANFVAGKARKVIGIEYVPEAIEDAKINSQINGIGNTLFFAGDMKD 402 Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPD 326 K+ + I DPPR+G+ + + A I+Y+SCNP Sbjct: 403 ILN-----------KEFITAHGQPDVIITDPPRAGMHKDVIETILFAAPHRIVYVSCNPA 451 Query: 327 SLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 + RDL++L + + I + D FP+T+H+E V+L R+ Sbjct: 452 TQARDLALLDSQYKIMGVRPVDMFPHTQHVENVVMLERR 490 >gi|323466981|gb|ADX70668.1| RNA methyltransferase family protein [Lactobacillus helveticus H10] Length = 460 Score = 237 bits (604), Expect = 3e-60, Method: Composition-based stats. Identities = 74/386 (19%), Positives = 142/386 (36%), Gaps = 40/386 (10%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNL-------QIFRSEPIHYRMRAEFHIWHDGDD 57 L YE+QL K + + + + + N I + HYR +A++ I + Sbjct: 91 LAHLSYEKQLEFKRNNMLESLRKYHPRNYAKYKVKKTIPAPDEWHYRNKAQYQIENIHGK 150 Query: 58 LYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLFQ 106 +F + + + S LI L + + R P ++ + + Sbjct: 151 TKLGLFAPNSHRLIDLPKMPTQSEDTQKTEREIKVLIEKLHVPVANFRRHLPGVKTIVVR 210 Query: 107 IDYLTSQSDQAIVTLIYH-RLLDDAWRECAI--RLRDALHARKYQIQLIGRANKTKICLD 163 T + ++T+ + + L +E + NKT+ L Sbjct: 211 QSEATKEIQVTLITIGHKIKNLIPLAKEIMKLDNVVSVYQNETEWQNPQVWGNKTEKLLG 270 Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGN 222 ++ + E + L +F Q N V++ L L++ Y G G Sbjct: 271 KNQIMEEILGKKFAL----SPRAFFQLNPVQTVNLYSEALKYLDLTPDQTLIDAYSGVGT 326 Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282 ++ A +V+ +E +V+ A++N+ NH+ N ++ S ++ L Sbjct: 327 LGILAADRVKQVIGIETIPEAVKDAQHNVELNHIKNADYIQGSVEKV------------L 374 Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLSILSTTHT 340 ++ + VDPPR+GL + + +YISCNP +L +DL +LS + Sbjct: 375 PELKNSGVSIDALIVDPPRTGLAKKLIKTLLQVKPETFVYISCNPSTLAQDLVLLSEVYD 434 Query: 341 IERLALFDQFPYTRHMECGVLLVRKP 366 + + D P T E LV + Sbjct: 435 VRVIQNVDMLPQTPRCEAIAKLVLRK 460 >gi|84390110|ref|ZP_00991372.1| 23S rRNA (uracil-5-)-methyltransferase [Vibrio splendidus 12B01] gi|84376764|gb|EAP93639.1| 23S rRNA (uracil-5-)-methyltransferase [Vibrio splendidus 12B01] Length = 439 Score = 237 bits (604), Expect = 3e-60, Method: Composition-based stats. Identities = 80/371 (21%), Positives = 143/371 (38%), Gaps = 30/371 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRS---EPIHYRMRAEFHIWHDGD-- 56 L Y Q+ K L +M +Q N ++ + YR RA ++ D Sbjct: 90 GCHLQHLGYASQVEHKSQSLTHLMSQYQTANTEVVEPIVGDETGYRRRARISLFVDKKTQ 149 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116 L +Q+K+ I +N L+ ++ + + L L ++ + + Sbjct: 150 QLQFGFRKKQSKQIENITDCAVLDPRLNVLLPKLKSLLNTFSNL-TSLGHVELVLGDTGP 208 Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGR 176 +V R L + L A + + +K + + G Sbjct: 209 VMVL----RHLKPLVEKDEQALIALAKAEGATLYTMPETDKIVRLVGDAPA---YSETGV 261 Query: 177 TLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVL 235 TL + N F Q N +N M+ + + + +L+L+CG GNFSL +A+ V+ Sbjct: 262 TLPFE--PNHFIQVNQKVNQQMVAQAIEWLEPQADERVLDLFCGLGNFSLPIAQQSAFVV 319 Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295 VE V+ A N N ++N + + + +E L RF I Sbjct: 320 GVEGVDEMVQQATSNATLNQLSNTEFYQANLEE------------ELSSQPWAKERFDKI 367 Query: 296 FVDPPRSGLDDATVGMV-QAYPHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYT 353 +DP R+G + ++Y+SCNP +L RD L + +++L + D FP+T Sbjct: 368 LLDPARAGASGIVDQISGLGAKRVVYVSCNPATLARDSESLEKQGYQLDKLGMLDMFPHT 427 Query: 354 RHMECGVLLVR 364 H+E L ++ Sbjct: 428 SHLESMALFIK 438 >gi|332299402|ref|YP_004441323.1| RNA methyltransferase, TrmA family [Porphyromonas asaccharolytica DSM 20707] gi|332176465|gb|AEE12155.1| RNA methyltransferase, TrmA family [Porphyromonas asaccharolytica DSM 20707] Length = 493 Score = 237 bits (604), Expect = 3e-60, Method: Composition-based stats. Identities = 87/408 (21%), Positives = 142/408 (34%), Gaps = 61/408 (14%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPNLQ-----IFRSEPIHYRMRAEFHIWHDG-------- 55 YE+QL K + M ++ + +P HYR + EF Sbjct: 91 PYEEQLRGKAQQAADAMTRIGHIEIEETEPIVGCEDPWHYRNKVEFTFSKKRWLTEEELK 150 Query: 56 --------DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQI 107 +L + F + +D + + + E+ + L R + + Sbjct: 151 SLPEEASEQELCGVGFHKAGMFDKVLDLHGVTCQIADPIASEIRDYLNDYCLARWEEYPY 210 Query: 108 DYLTSQSDQAIVTLIYHRLLD---------DAWRECAIRLRDALHARKYQIQLIGRANKT 158 + LI L + E I+L +AL R QI + T Sbjct: 211 YDQRAHEGVMRTLLIRTTTLGGLMVLIAFAEGTEELRIQLLEALRMRFPQITSLYYMVNT 270 Query: 159 K-----------ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATK 207 K + Y++E + L YR SF Q N+ + E V + Sbjct: 271 KFNDSLADLPAQLYSGAPYIEEDMH----GLRYRIGPKSFYQTNSRQAERLYEKVREYAQ 326 Query: 208 GIQGDLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266 +++ +LY G G + LA+ V+ +E +VE A N N + N Sbjct: 327 LTGDEVVYDLYTGAGTIANYLAQSCRSVIGIEYVPEAVEDAFVNRDQNGITNATFYAGDM 386 Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCN 324 K D R + DPPR+G+D V ++ A I+Y+SCN Sbjct: 387 KAILTD-----------DFVAAHGRPDVLVTDPPRAGMDTPVVDVILRAAPQRIVYVSCN 435 Query: 325 PDSLCRDLSIL--STTHTIERLALFDQFPYTRHMECGVLLVRKPSGWH 370 P + RDL++L + R D FP+T H+E LL + + H Sbjct: 436 PATQARDLALLMAEGQYRAVRACAVDMFPHTHHVETVALLSKLNTEHH 483 >gi|126661911|ref|ZP_01732910.1| putative RNA methyltransferase [Flavobacteria bacterium BAL38] gi|126625290|gb|EAZ95979.1| putative RNA methyltransferase [Flavobacteria bacterium BAL38] Length = 470 Score = 237 bits (604), Expect = 3e-60, Method: Composition-based stats. Identities = 73/402 (18%), Positives = 140/402 (34%), Gaps = 54/402 (13%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMML---AFQVPNLQ--IFRSEPIHYRMRAEFHIWH--- 53 +Y QQL K + + ++P + + + YR + EF + Sbjct: 85 GCKWQNMKYSQQLFYKNQEVYNNLKRIGKIELPEFEAILGSEKQFFYRNKMEFGFSNARW 144 Query: 54 ------------DGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-- 99 D + + + + I+ N + E+ L Sbjct: 145 MTDAEIQSGTEFDNKNALGFHIPRMWDKILDIEKCHLQEDPSNEIRNEIKRFANENNLTF 204 Query: 100 -----LRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGR 154 + L + T+ + + +V + ++ + L + +I + Sbjct: 205 FNARAVEGLLRTLMIRTASTGEIMVLIQFYENDKNGIELMMNFLAERFPQITSLQYVINQ 264 Query: 155 A-----NKTKICL--DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATK 207 I L RDY+ E + L + SF Q N+ L + Sbjct: 265 KLNDTLYDQDIILFKGRDYILEEM----EGLHFSINAKSFYQTNSDQAYE-LYKITREFA 319 Query: 208 GIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265 G+ G+ + +LY G G + +++ +V+ VE ++ A+ N N++ N + Sbjct: 320 GLTGNETVYDLYTGTGTIAQFVSKQAKKVIGVEAVPEAIIDAKANATRNNITNCEFYVGD 379 Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISC 323 K + + I DPPR G+ V M+ P I+Y+SC Sbjct: 380 MKNVFND-----------EFINQHGQPDVIITDPPRDGMHKDVVEMLLKTDVPKIVYVSC 428 Query: 324 NPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 N + RDL+++ + + R+ D FP T H+E VLL ++ Sbjct: 429 NSATQARDLALMDEKYKVVRVRPVDMFPQTHHVENVVLLEKR 470 >gi|188995054|ref|YP_001929306.1| RNA methyltransferase [Porphyromonas gingivalis ATCC 33277] gi|188594734|dbj|BAG33709.1| RNA methyltransferase [Porphyromonas gingivalis ATCC 33277] Length = 478 Score = 237 bits (604), Expect = 3e-60, Method: Composition-based stats. Identities = 77/408 (18%), Positives = 150/408 (36%), Gaps = 61/408 (14%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-----IFRSEPIHYRMRAEFHIWH--- 53 YE QL K ++ ++ ++ + + +YR + EF + Sbjct: 84 GCKWQHIPYEIQLRAKEQQVTDALVRLGKVEVEEMQPILGSEQTEYYRNKLEFTFSNKRW 143 Query: 54 ---------DGDDLYHIMFDQQTK------ERMRIDYFMPGSLLINALMIEMMATIRLEP 98 DGD + + + + I G+ + + + + + +P Sbjct: 144 LLPEEVREVDGDFSPEVRYGLGFHIPGMFDKVLDIRECHLGAKVSDEIRLFIREYCMQDP 203 Query: 99 LL---------RAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQI 149 + + T+ + + +V +++ R A + + + Sbjct: 204 ERYPFFDLRNQEGLMRTLMIRTTSTGELMVVVVFFRDDVAAREALLAAVAERFPQITSLL 263 Query: 150 QLIGRA-----NKTKICL--DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWV 202 +I ++ L R+Y++E + L ++ SF Q N+ + L + Sbjct: 264 YVINTKCNDTIGDQEVLLYHGREYIEEEM----EGLKFKIGAKSFYQTNSRQA-YQLYRI 318 Query: 203 LAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK 260 G+ GD + +LY G G + +A RV+ +E ++E AR N N + N Sbjct: 319 AREFAGLTGDELVYDLYTGTGTIANFVAGQAHRVIGIEYVPEAIEDARTNSLLNGIENTL 378 Query: 261 IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHI 318 K+ D R + DPPR+G+ ++ + + A I Sbjct: 379 FYAGDMKDILT-----------NDFIEQHGRPDVVITDPPRAGMHESVIDAILFAAPKRI 427 Query: 319 LYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTRHMECGVLLVR 364 +Y+SCNP + RDL++L + + D FP+T H+E VLLVR Sbjct: 428 VYVSCNPATQARDLALLMADGRYRAVKSRPVDMFPHTHHVENVVLLVR 475 >gi|78189981|ref|YP_380319.1| 23S rRNA methyltransferase/RumA [Chlorobium chlorochromatii CaD3] gi|78172180|gb|ABB29276.1| 23S rRNA m(5)U-1939 methyltransferase [Chlorobium chlorochromatii CaD3] Length = 477 Score = 237 bits (604), Expect = 3e-60, Method: Composition-based stats. Identities = 85/411 (20%), Positives = 154/411 (37%), Gaps = 69/411 (16%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ----VPNLQIFRS-EPIHYRMRAEFHIWHDGD 56 L+ E QL K ++ + P + P+HYR + EF Sbjct: 87 GCKLMHVCNEAQLRYKQKKVSDALKHLGDFVEPPVASVLAGTSPLHYRNKMEFSF----A 142 Query: 57 DLYHIMFDQ-------QTKE-------------RMRIDYFMPGSLLINALMIEMMATIRL 96 ++M ++ ++KE + IDY +N ++ Sbjct: 143 AKRYLMPEELSLTELSRSKEFALGFHTPGNFEKVIDIDYCYLARNEMNQVLELTRRFALQ 202 Query: 97 EPL-----------LRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHAR 145 L LR + + + + + +V L+ + + L A+ + Sbjct: 203 HALPPYSVKTHTGFLRNLVVR---FSEHTQELMVNLVTSWHDAEVMARYSAMLHHAMPEQ 259 Query: 146 KYQIQLIGRANK--------TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVH 197 K + + K + ++ ERL L +R NSF Q N+ Sbjct: 260 KMTVVNNITSRKNGVATGEEEVVISGEGFITERLC----GLDFRISANSFFQTNSAQAEV 315 Query: 198 MLEWVLA-ATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV 256 + + +LA A + +LYCG G +L +A H +V+ +E+ + ++ A+ N N + Sbjct: 316 LYQTLLAVADLQPTDTVYDLYCGTGTITLCMAAHCHQVIGLEVVESAIRDAQNNALRNGI 375 Query: 257 NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAY 315 N + K+F + E + + I DPPR+G+ + MVQ Sbjct: 376 TNAHFLLADLKDFHTLLPLLEEHG----------KPRVIVTDPPRAGMHPKALATMVQLQ 425 Query: 316 P-HILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364 P I+Y+SCNP SL RD L + +++ + + FP T H+E V+ Sbjct: 426 PERIIYVSCNPASLARDGKELAAQGYSLRSVQPVEMFPQTNHIESVGCFVK 476 >gi|253681845|ref|ZP_04862642.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum D str. 1873] gi|253561557|gb|EES91009.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum D str. 1873] Length = 450 Score = 236 bits (603), Expect = 3e-60, Method: Composition-based stats. Identities = 78/391 (19%), Positives = 148/391 (37%), Gaps = 47/391 (12%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIW--HDG 55 + YE+QL K D++ ++ + + E YR + EF G Sbjct: 79 GCSHQFLSYEKQLEIKKDQVLKLFENAGISGFEFLGIQGSPEEFEYRNKMEFTFGDMEKG 138 Query: 56 DDLYHIMFDQQTK-ERMRIDYFMPGSLLINALMIEMMAT-----------IRLEPLLRAK 103 +L M Q + D N ++ ++ + E LR Sbjct: 139 GELTLGMHAQGKSFGIISADECKIVDSDFNLILKTVLEYFRGKELPHYRIMSHEGYLRNL 198 Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAI------RLRDALHARKYQIQLIGRANK 157 + + T + +VT + E L+ LH + + +A+ Sbjct: 199 VIRKGRNTQEIMVNLVTTSQREFDLSEFVELLKGLNYKGELKGILHTVNDSLSDVVQADS 258 Query: 158 TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-EL 216 ++ RDY+ E + L ++ SF Q N + V + ++ +L Sbjct: 259 MEVLFGRDYIMEEVL----GLKFKISPFSFFQTNTKGAEALYSIVRDFMGDAKSKVVFDL 314 Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276 YCG G + A + ++V+ +E+ + + +AA N N +NN + + + + ++ Sbjct: 315 YCGTGTIGQIAAHNAEKVIGIELIEEAAKAANENAKLNCLNNCEFLAGDVAKVIKDIK-- 372 Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLSI 334 + I +DPPR G+ + V + I+Y+SCNP +L DL Sbjct: 373 -------------VKPDIIILDPPRPGVHPDALKYVTKFNANDIIYVSCNPKTLVEDLKF 419 Query: 335 L-STTHTIERLALFDQFPYTRHMECGVLLVR 364 L + +E++ + D FP+T H+E V L + Sbjct: 420 LIKEGYKVEKVKVKDMFPHTPHVESVVKLSK 450 >gi|218130910|ref|ZP_03459714.1| hypothetical protein BACEGG_02505 [Bacteroides eggerthii DSM 20697] gi|317476221|ref|ZP_07935472.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides eggerthii 1_2_48FAA] gi|217987254|gb|EEC53585.1| hypothetical protein BACEGG_02505 [Bacteroides eggerthii DSM 20697] gi|316907632|gb|EFV29335.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides eggerthii 1_2_48FAA] Length = 475 Score = 236 bits (603), Expect = 3e-60, Method: Composition-based stats. Identities = 76/399 (19%), Positives = 143/399 (35%), Gaps = 57/399 (14%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFHIWHDG-------- 55 Y +Q+ K ++ + + + YR + E+ + Sbjct: 91 PYSEQIRYKQKQVTDNLTRIGKIELPEILPILGSEKTEFYRNKLEYTFSNKRWLTTEEVR 150 Query: 56 -DDLYHIMFDQQTK------ERMRIDYFMPGSLLINALMIEMMATIRLEPL----LRAK- 103 + +Y M + + I+ + N + + LR + Sbjct: 151 QNVVYEQMNAVGFHIPNAFDKVLAIEKCWLQDDISNRIRNAVRDFAYEHDYSFINLRTQE 210 Query: 104 --LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLR---DALHARKYQIQLIGRA-NK 157 L + TS + + +V LI D+ L+ D + +I N Sbjct: 211 GMLRNMIVRTSSTGELMVILICKIEKDEEMALFNQLLQYVADTFPEITSLLYIINNKCND 270 Query: 158 TKICL------DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG 211 T L +D++ E + L ++ SF Q N+ + L V G+ G Sbjct: 271 TITDLDVHTFKGKDHIFEEM----EGLRFKIGPKSFYQTNSEQAYN-LYKVARNFAGLTG 325 Query: 212 D--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269 + + +LY G G + +++ +V+ +E ++E A+ N N + N K+ Sbjct: 326 NELVYDLYTGTGTIANFVSKQARQVIGIEYVPEAIEDAKVNSEINGIQNTLFFAGDMKDM 385 Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDS 327 +D R I DPPR+G+ + ++ I+Y+SCNP + Sbjct: 386 LT-----------QDFINEYGRPDVIITDPPRAGMHQDVIDVILFAEPKRIVYVSCNPAT 434 Query: 328 LCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRKP 366 RDL +L + ++ + D FP+T H+E VLL K Sbjct: 435 QARDLQLLDAKYKVKAVQPVDMFPHTHHVENVVLLELKN 473 >gi|168028766|ref|XP_001766898.1| predicted protein [Physcomitrella patens subsp. patens] gi|162681877|gb|EDQ68300.1| predicted protein [Physcomitrella patens subsp. patens] Length = 492 Score = 236 bits (603), Expect = 3e-60, Method: Composition-based stats. Identities = 85/426 (19%), Positives = 144/426 (33%), Gaps = 89/426 (20%) Query: 10 YEQQLAEKVDRLRQM---MLAFQV----PNLQIFRSE------PIHYRMRAEFHIWHDGD 56 YE QL EK ++ + + F + P YR + EF Sbjct: 81 YEAQLREKEQQVHDLIARLGKFGNSPLSGEPGSYMMPIVPCATPYAYRNKMEFSYGTKKW 140 Query: 57 DLYHIM----------------FDQQTK------ERMRIDYFMPGSLLINALMIEMMA-- 92 + F + M I + + N ++ + Sbjct: 141 KSKGLFVSPKLEDVNESGPKLEFALGLHAPGRFDKIMPIHNCLLQHDVSNQVLKLVQDHG 200 Query: 93 TIRLEPL----LRAKLFQIDYLTSQSD--------QAIVTLIYHRLLDDAWRECAIRLRD 140 LE L +R + +LT +S Q +V + D + ++ Sbjct: 201 ERHLEELPPYDVRTHEGFLKHLTIRSGRDCETGQLQLMVNFVTKGDKKDLLQPLVDQITT 260 Query: 141 ALHARKYQIQLIGRA-------NKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAG 193 + + + A +K + + Y+ ERL R L++ NSF Q N Sbjct: 261 SFPQVVSIVNNVNSAVGPSSIVDKEHVLYGKAYITERL----RGLVFEISANSFFQTNTS 316 Query: 194 INVHMLEWVLAATKGIQGD----LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249 + + V ++GD LL+L+CG G L +A+ V E+ + +V AR Sbjct: 317 QAEVLYQKV-EEQCALKGDGSEVLLDLFCGTGTIGLSMAKRVKHVYGYELVQEAVVDARR 375 Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309 N A N + N ++ + T ++ R + DP R G+ + Sbjct: 376 NAARNGIQNATFIQGDLNKLTDEFGKDF------------PRPDVVITDPNRPGMHIKLI 423 Query: 310 GMVQA--YPHILYISCNPDSLCRDLSILSTT----------HTIERLALFDQFPYTRHME 357 + I+YISCNP + RDL +L T + + + D FP T H+E Sbjct: 424 KYLLQLRARRIVYISCNPATCARDLDLLCHTGDEGVESPTRYRLVHVQPVDMFPQTPHIE 483 Query: 358 CGVLLV 363 C L Sbjct: 484 CITTLE 489 >gi|225442369|ref|XP_002276511.1| PREDICTED: hypothetical protein [Vitis vinifera] gi|297743126|emb|CBI35993.3| unnamed protein product [Vitis vinifera] Length = 570 Score = 236 bits (603), Expect = 3e-60, Method: Composition-based stats. Identities = 76/425 (17%), Positives = 144/425 (33%), Gaps = 78/425 (18%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQV-----PNLQIFRSE------PIHYRMRAEFH 50 YE Q+ K +++++++ P HYR + EF Sbjct: 163 GCKTQNLSYEAQVRAKEQQVQELVIHVGKFSDKDPEFSSIMKPIVPCDVQFHYRNKMEFS 222 Query: 51 IWHDGDDLYHIMFDQQT---------------KERMRIDYFMPGSLLINALMIEMMATIR 95 ++ +++ + + ++ + S N ++ + R Sbjct: 223 FATQKWLPRELLHEKEDGASGYALGLHAPGFFDKVLNVNKCLLQSEPANTVLAAIQECWR 282 Query: 96 L-------------EPLLRAKLFQI--DYLTSQSDQAI--VTLIYHRLLDDAWRECAIRL 138 + L+ + + D T + + VT Y L E + Sbjct: 283 DPQFGLSPYNVHSHDGFLKHLVLRTGRDIKTGLPELMVNFVTSSYKPELLKPLVEKISAI 342 Query: 139 RD---ALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGIN 195 + ++ + + I + + E L R L ++ NSF Q N Sbjct: 343 PEVVSIVNNINTSVGSTSVGEQEYILHGKSAITEIL----RGLTFQISANSFFQTNTHQA 398 Query: 196 VHMLEWVLAATKGIQGD----LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251 +L ++ G++GD +L+L+CG G L L+R V E+ +V AR N Sbjct: 399 E-VLYKLIEDCAGLRGDGSEIVLDLFCGTGTIGLTLSRRVRHVYGYEVVAQAVSDARRNA 457 Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD--DATV 309 N + N + + + ++ + + DP R G+ Sbjct: 458 KLNGICNATFIEGDLNKIGENFGKDF------------PKPDVVISDPNRPGMHMKLIKF 505 Query: 310 GMVQAYPHILYISCNPDSLCRDLSILSTT---------HTIERLALFDQFPYTRHMECGV 360 + P I+Y+SCNP + RDL L + ++ L D FP+T H+EC Sbjct: 506 LLKLKAPRIVYVSCNPATCARDLDYLCHGVVEQNIEGCYKLKSLQPVDMFPHTPHIECVC 565 Query: 361 LLVRK 365 LL + Sbjct: 566 LLELR 570 >gi|226494722|ref|NP_001143116.1| hypothetical protein LOC100275594 [Zea mays] gi|224031061|gb|ACN34606.1| unknown [Zea mays] Length = 558 Score = 236 bits (603), Expect = 4e-60, Method: Composition-based stats. Identities = 78/430 (18%), Positives = 146/430 (33%), Gaps = 93/430 (21%) Query: 10 YEQQLAEKVDRLRQM---MLAFQVPNLQIFRSEP-------------IHYRMRAEFHIWH 53 Y Q+ K ++R + F L+ SEP YR + EF Sbjct: 148 YAAQIRHKHHQVRDLLVNFGKFDPKRLE--SSEPDDILKPTVQCDEIFRYRNKMEFSFGT 205 Query: 54 D-------GDDLYHIMFDQQTKE----------------RMRIDYFMPGSLLINALMIEM 90 D + Q+T E + + S + ++ + Sbjct: 206 KRWVQKELKDKGEEVEVKQETNETDGYALGLHAPGFFDKVLHVQKCFLQSEPADKVLAVV 265 Query: 91 MATIRLEPL-------------LRAKLFQID-YLTSQSDQAIVTLIYHRLLDDAWRECAI 136 T + L+ + + +++ + + +V + D Sbjct: 266 QETWMDPAIGLTPYDVHKHVGFLKHLMIRTGRNISTGTPEVMVNFVTSCYKPDVLMPLVD 325 Query: 137 RLRDA------LHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQP 190 ++ ++ + + + + E L R L ++ NSF Q Sbjct: 326 KITKIPEVVSVINNVNSSVGNSSVGEQEYTLYGKPNITEML----RGLAFQISANSFFQT 381 Query: 191 NAGINVHMLEWVLAATKGIQGD----LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246 N +L ++ + G++GD +L+L+CG G L AR + E+ ++E Sbjct: 382 NTKQAD-VLYKLIEDSAGLKGDGSEIVLDLFCGTGTIGLTFARRAKHIYGYEVVPEAIED 440 Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306 AR N N +NN V+ + ++ +E + I DP R G+ Sbjct: 441 ARKNAKLNGINNATFVQGDLNKINESFGKEF------------PKPDIIISDPNRPGMHM 488 Query: 307 ATVGMVQ--AYPHILYISCNPDSLCRDLSILSTT---------HTIERLALFDQFPYTRH 355 + + P I+Y+SCNP + RDL L + ++ + D FP+T H Sbjct: 489 KLIKWLLEVKAPRIVYVSCNPATCARDLDYLCHGVEEKDLRGFYELKSVIPVDMFPHTPH 548 Query: 356 MECGVLLVRK 365 +EC LL + Sbjct: 549 IECVCLLELR 558 >gi|304382443|ref|ZP_07364941.1| 23S rRNA (uracil-5-)-methyltransferase [Prevotella marshii DSM 16973] gi|304336396|gb|EFM02634.1| 23S rRNA (uracil-5-)-methyltransferase [Prevotella marshii DSM 16973] Length = 473 Score = 236 bits (602), Expect = 4e-60, Method: Composition-based stats. Identities = 79/405 (19%), Positives = 143/405 (35%), Gaps = 57/405 (14%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRS-----EPIHYRMRAEFHIWHDGD 56 YE+QL K ++ + L FR YR + EF + Sbjct: 84 GCKWQHLPYEEQLKAKQQQVYDQLTRIGKLELPAFRPIMGSVHTQAYRNKLEFGCSNRRW 143 Query: 57 DLYHIMFDQQT---------------KERMRIDYFMPGSLLINALMIEMMA-------TI 94 H + +T + + I+ + L N + + + Sbjct: 144 LTPHQISSGETFDNMNAIGFHITGAFDKILPIEKCLLMDDLHNEIRNAIRDFAIDAHLSF 203 Query: 95 RLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGR 154 L I S + + +V + +H + A+ L + L R QI + Sbjct: 204 YDLRAQHGLLRDIMIRNSNTGEWMVLVQFHYD-ETGDEAKALALMEHLARRFPQITSLLY 262 Query: 155 ANKTK-----------ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL 203 + K + +D++ E + L ++ SF Q N H+ V Sbjct: 263 VDNQKGNDTFGDLQLQLYKGKDHIYETM----EDLRFKVGPKSFYQTNTAQAYHLYSVVR 318 Query: 204 AATKGIQGDLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262 + +L+ +LY G G + +AR+ RV+ +E ++E A+ N N ++N Sbjct: 319 DLARLTGSELVYDLYTGTGTIANFVARNAGRVIGIEYVPEAIEDAKVNSQINGIDNTLFY 378 Query: 263 RMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILY 320 K + R + DPPR+G+ V + I+Y Sbjct: 379 AGDMKNILT-----------ETFIAEHSRPDVVITDPPRAGMHPDVVQTILNTLPQRIVY 427 Query: 321 ISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 +SCNP + RDL+++ + + + D FP+T H+E VLL + Sbjct: 428 VSCNPATQARDLALMDVRYKVTVVQPVDMFPHTPHVENVVLLELR 472 >gi|326794412|ref|YP_004312232.1| RNA methyltransferase, TrmA family [Marinomonas mediterranea MMB-1] gi|326545176|gb|ADZ90396.1| RNA methyltransferase, TrmA family [Marinomonas mediterranea MMB-1] Length = 435 Score = 236 bits (602), Expect = 4e-60, Method: Composition-based stats. Identities = 88/370 (23%), Positives = 156/370 (42%), Gaps = 33/370 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHI 61 Y Q+ K + L + ++++ YR RA ++ G + Sbjct: 93 GCQFQHLIYPDQVEAKTEWLSGQFRKLAIGDIELLSDHSEAYRRRARLSVFTKGGEHQIG 152 Query: 62 MFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAI--- 118 + +K+ + I + + + ++ + + + E L +++ ++ L +S +I Sbjct: 153 FRARSSKDIVNIANCLVLTESLQSVFVALKERLH-ESSLTSRIGHVELLEDESGSSITIR 211 Query: 119 VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTL 178 ++ + W A + L+ ++ I A K YVD L Sbjct: 212 LSREISATDESDWMVWASEVGVNLYWQRADESRISTARKH-----YYYVD--------GL 258 Query: 179 IYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAV 237 + F Q NA +N M+E + + D +L+L+CG+GNFSL LAR VL V Sbjct: 259 NIQFHPQDFIQVNASMNEKMVEQAMRWLAPTKEDIVLDLFCGSGNFSLPLARRAGEVLGV 318 Query: 238 EIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFV 297 E + VE AR N N ++NV+ + + + + S + + + Sbjct: 319 EGLETMVEFARLNAQENDLDNVQFIAADLTKPAPKV-------------LKSKKVTKVLL 365 Query: 298 DPPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRH 355 DPPRSG + +V+ P ILY+SCN +L RD L + + + R++L + FP T H Sbjct: 366 DPPRSGAFEFLETLVKFKPEQILYVSCNASTLARDAEYLIANGYVVSRVSLMEMFPQTAH 425 Query: 356 MECGVLLVRK 365 E +LL RK Sbjct: 426 AEAMMLLQRK 435 >gi|158338369|ref|YP_001519546.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Acaryochloris marina MBIC11017] gi|158308610|gb|ABW30227.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Acaryochloris marina MBIC11017] Length = 478 Score = 236 bits (602), Expect = 4e-60, Method: Composition-based stats. Identities = 77/388 (19%), Positives = 156/388 (40%), Gaps = 44/388 (11%) Query: 9 QYEQQLAEKVDRLRQMML---AFQVPNLQ--IFRSEPIHYRMRAEFHI--WHDGDDLYHI 61 Y QL K + + Q + FQ P ++ + PI YR + + I + + + Sbjct: 106 DYAYQLVAKQNHVIQALERIGKFQSPVVEPVLAAPSPIEYRNKVTYPIVLSPNTNRVQAG 165 Query: 62 MFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEP-----------LLRAKLFQIDYL 110 + + + + + ++ N+ + E+ I+ + L+R +I Sbjct: 166 YYRKGSHKLINLNQCPVQDPHFNSFLAEIKEDIQKQDWPIYNEQNHRGLIRHLSIRIGRR 225 Query: 111 TSQSDQAIVTLIYHRLLDDAWRECAIRLRDAL--HARKYQIQLIGRANKTKICLDRD--- 165 T + ++ + ++++ L + R I L ++T D Sbjct: 226 TGEILMTLIINAKPNQSLSELVDLDAQVQEWLERYPRLVGISLNFNPHRTNRIFGHDSTC 285 Query: 166 -YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNF 223 L L ++ ++F Q + +L + + + + +++LYCG G Sbjct: 286 IAGHHYLQETFAGLTFQLRHDTFFQVHTEQAEVLLNTLFDHLQLMGSEQVVDLYCGIGTL 345 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 +L LA+ ++ +E+ +V+ A+ N N ++NV ++K A RE F Sbjct: 346 TLPLAQRVKEIIGIELQAAAVDQAQTNATLNQISNVTFAAGTAK----ACLRELPF---- 397 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILSTT--H 339 + +DPPR G + + + A I+Y+SC+ +L RDL++L + + Sbjct: 398 -------VPDLVLLDPPRKGCHQSVIEQLLALKPAQIVYVSCHSATLARDLNLLCQSGQY 450 Query: 340 TIERLALFDQFPYTRHMECGVLLVRKPS 367 + R+ D FP T H+EC L R+ S Sbjct: 451 DLTRVQPVDFFPQTSHVECVAFLNRRAS 478 >gi|325679292|ref|ZP_08158877.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Ruminococcus albus 8] gi|324108889|gb|EGC03120.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Ruminococcus albus 8] Length = 454 Score = 236 bits (602), Expect = 4e-60, Method: Composition-based stats. Identities = 72/392 (18%), Positives = 138/392 (35%), Gaps = 46/392 (11%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIH-------YRMRAEFHIWHD 54 + YE++ K + +R+ + + P YR +A++ + Sbjct: 82 GCSFRHIIYEEECRIKDNFIRESFERIGKLSPEYL---PFSGCKDIDLYRNKAQYPVAET 138 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGSLL-----------INALMIEMMATIRLEPLLRAK 103 + +++ + + +N I +RL LLR Sbjct: 139 EGKAVCGFYAKRSHRVVEFTRCRLQPKIFSDIVDKIISYVNTRHIPAYDEVRLSGLLRHI 198 Query: 104 LFQIDYLTSQSDQAIVTLIYHRL-----LDDAWRECAIRLRDALHARKYQIQLIGRANKT 158 + + + +V + L A + ++ L + + K Sbjct: 199 YLRRGANSGEIMVCLVVTSIKKAGVFDDLVPALLDSFSDIKTVLLNENPRNTNVILGEKM 258 Query: 159 KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELY 217 K + + + + SF Q N + A LL+LY Sbjct: 259 KYLYGDGSIKDTMCGNTVS----ISPLSFYQVNTHQAELLYAMAAELAGLSENMTLLDLY 314 Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277 CG G L +AR +++ VEI +P+++ A N AN + N + + + + + + Sbjct: 315 CGTGTIGLSMARQVKKLIGVEIIQPAIDNAVVNAKANGIENAEFICGDAGKIAKLLYERG 374 Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSIL 335 E R I DP R G D ++ + I+ ISCN + RD +IL Sbjct: 375 E------------RPDVIIADPARRGCDGESLEYMAKMSPDRIVMISCNHTTAARDCAIL 422 Query: 336 ST-THTIERLALFDQFPYTRHMECGVLLVRKP 366 ++ +++ FD FP T H+EC VL+ ++ Sbjct: 423 GELGYSCDKVMGFDLFPRTTHVECVVLMSKEK 454 >gi|315652265|ref|ZP_07905257.1| 23S rRNA (uracil-5-)-methyltransferase [Eubacterium saburreum DSM 3986] gi|315485388|gb|EFU75778.1| 23S rRNA (uracil-5-)-methyltransferase [Eubacterium saburreum DSM 3986] Length = 475 Score = 236 bits (602), Expect = 4e-60, Method: Composition-based stats. Identities = 89/417 (21%), Positives = 145/417 (34%), Gaps = 76/417 (18%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL---QIFRSEPIH-YRMRAEFHIW--HDG 55 T YE QL K +++++M + + I S YR + EF Sbjct: 80 GCTYQTISYENQLKLKDTQIKELMKSATDNDFLWEGIIPSPKYQAYRNKMEFSFGDEKKD 139 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRL---------------EPLL 100 +L M + + + ++ F G ++++ +++ L Sbjct: 140 GELALGMHKKGSHYDI-VNVF--GCKIVDSDFTKLLELTLNFFKERNIAYFHKNTHTGFL 196 Query: 101 RAKLFQIDYLTSQSDQAIVT------------LIYHRLLDDAWRECAIRLRD-------- 140 R L + T + +VT L +L DA D Sbjct: 197 RHLLVRRSEYTGEILVLLVTTSSFGFVEDPNVLREASILGDAEIALIREWADYIKVECNK 256 Query: 141 ---------ALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPN 191 LH + T + DY+ ERL L ++ SF Q N Sbjct: 257 GILNGSIGGILHTKNDSYADAVLNQGTTLLYGNDYITERL----NRLDFKITPFSFFQTN 312 Query: 192 AGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN 250 + + +G + +LY G G + +LA ++V VEI + +VEAA N Sbjct: 313 SKGAEVLYTVAGKYLGDTEGKSVFDLYSGTGTIAQLLAPKSEKVYGVEIVEEAVEAAIEN 372 Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310 N +NN + + LK +D + I +DPPR G+ + Sbjct: 373 AKKNGLNNCEFIAGDV---------------LKVVDTLGFNPDIIVLDPPRDGIHPKALP 417 Query: 311 MVQ--AYPHILYISCNPDSLCRDLSILS-TTHTIERLALFDQFPYTRHMECGVLLVR 364 + I+YISC P S RDL I+ + +E+ D FP T + E LL R Sbjct: 418 KILDFGADKIVYISCKPTSFVRDLKIMEAAGYKMEKCVGVDMFPNTVNCEAVALLSR 474 >gi|300361238|ref|ZP_07057415.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus gasseri JV-V03] gi|300353857|gb|EFJ69728.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus gasseri JV-V03] Length = 459 Score = 236 bits (602), Expect = 5e-60, Method: Composition-based stats. Identities = 64/387 (16%), Positives = 135/387 (34%), Gaps = 40/387 (10%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHDGDD 57 L Y +QL K + + + + + I HYR +A++ I + Sbjct: 88 LAHLSYPKQLEFKQHLILESLRKYHPRDYIKYKVKKTISAPNAWHYRNKAQYQIEFNKGK 147 Query: 58 LYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLFQ 106 ++ ++ + + + LI+ L I + R ++ + + Sbjct: 148 SKLGLYAPNSRRLIDLPEMPTQTKETQKTEREIKKLIDKLHIRIADFRRHNDGIKTIVVR 207 Query: 107 IDYLTSQSDQAIVTL---IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD 163 + + + ++T+ I L + + NKT Sbjct: 208 QSHASGEIQVTLITIGKKIRDLKLLASQIMKLPNVVSVFQNETQWQNPQVWGNKTIKLFG 267 Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGN 222 + ++ E + ++ +F Q N + L L++ Y G G Sbjct: 268 KSHIIEEILGK----KFKLSPRAFFQLNPEQTSTLYSEALKYLDLTPDQTLIDAYAGVGT 323 Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282 ++ + +V+ +E +V A+ N NHV N + ++ + ++ L Sbjct: 324 LGILASDQVRQVIGIESIPEAVIDAQENCHLNHVRNAEYIQGNVEKL------------L 371 Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLSILSTTHT 340 ++ + VDPPR+GL + + +Y+SCNP +L +DL +LS + Sbjct: 372 PELKNQGVPIDALIVDPPRTGLSKKLIKTLLEVKPETFVYVSCNPATLAKDLVLLSEAYD 431 Query: 341 IERLALFDQFPYTRHMECGVLLVRKPS 367 + + D P T E LV + + Sbjct: 432 VRVIQPVDMMPQTPRWEGVTKLVLRKN 458 >gi|116747738|ref|YP_844425.1| RNA methyltransferase [Syntrophobacter fumaroxidans MPOB] gi|116696802|gb|ABK15990.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Syntrophobacter fumaroxidans MPOB] Length = 488 Score = 236 bits (602), Expect = 5e-60, Method: Composition-based stats. Identities = 87/406 (21%), Positives = 155/406 (38%), Gaps = 55/406 (13%) Query: 2 SGTLLID-QYEQQLAEKVDRLR---QMMLAFQVPNLQ--IFRSEPIHYRMRAEF----HI 51 G D YE+QL K ++ + + Q ++ + IHYR + EF Sbjct: 95 GGCQWQDIAYEEQLKWKRVQVADSLEHLAGAQGVKIEAAVPSDRLIHYRNKMEFTFSDRR 154 Query: 52 WHDGDD-LYHIMFDQQT-----------KERMRIDYFMPGSLLINALMIEMMATIRLEPL 99 W ++ M D T + ++ + S ++ E R + Sbjct: 155 WLTPEEIDAAGMRDAYTFTLGLHVRSWFDKVFNVEDCLLESAEAVEIVKETRDWCRGSGV 214 Query: 100 L-----------RAKLFQIDYLTSQSDQAIVTL---IYHRLLDDAWRECAIR---LRDAL 142 R + + T Q+ +VT + ++ R R + + Sbjct: 215 PAYGIKSQRGFWRFLVIREGKRTGQTLLHLVTSDQPEHEAAVNTLTRHLVSRFPHITTVV 274 Query: 143 HARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWV 202 H+ + + +++++ ++ERL L +R SF Q N + + V Sbjct: 275 HSVSRKKAQVAFGDQSRVVAGPGVIEERLG----GLRFRISAESFFQTNPFSAEKLYDEV 330 Query: 203 LA-ATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261 A + +LYCG G+ +L +A RV+ E+ ++E A N N + N + Sbjct: 331 SRLAAFQGTETVWDLYCGTGSIALSVAPRVARVVGFEVVDQAIEDACVNARLNGIENARF 390 Query: 262 VRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHIL 319 + KE N + + + DPPR+G+ VG + I+ Sbjct: 391 ISGDLKE---------RINHARGPGSGEHHPDIVITDPPRAGMHPQVVGALLEMGPGRII 441 Query: 320 YISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 Y+SCNP +L RDL+ + + I + FD FP+T H+EC V + RK Sbjct: 442 YVSCNPATLARDLAFFTERYEIGTVRPFDLFPHTPHIECVVRMDRK 487 >gi|193216964|ref|YP_002000206.1| tRNA (uracil-5-)-methyltransferase related enzyme [Mycoplasma arthritidis 158L3-1] gi|193002287|gb|ACF07502.1| tRNA (uracil-5-)-methyltransferase related enzyme [Mycoplasma arthritidis 158L3-1] Length = 449 Score = 236 bits (602), Expect = 5e-60, Method: Composition-based stats. Identities = 85/375 (22%), Positives = 146/375 (38%), Gaps = 29/375 (7%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLA---FQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHI 61 L+I YE QLA K + + L F+ I+YR + H+ G Sbjct: 86 LMILSYEDQLAFKQKIVNDLFLRELNFRNVKEITPSPLEINYRNKLRVHVECQGTTFKMG 145 Query: 62 MFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTS-------QS 114 + + + + + I ++ E+ + E LL + + +TS ++ Sbjct: 146 FYVKNSHILVEQTSYDLAYKEIGNILEEIDFLCKKEVLLEDNFIKKNKITSITVKYSEKT 205 Query: 115 DQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC-LDRDYVDERLTV 173 ++ V + RL + +Q++ KTKI L E + Sbjct: 206 GESQVIFESLKQ-APFPASFIKRLIEKFDNLN-IVQIVCNEEKTKILKLIVLAGKESIEY 263 Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFD 232 L + SF Q N M + +L + + +++ + G G + LA+ Sbjct: 264 KIDKLKFNVSSQSFYQVNEKQTNKMYKTLLKSLNLTGSEFIVDAFAGVGTIGMYLAKKAK 323 Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292 +V+ VEI+K + + N N +NN++ + F R+ Sbjct: 324 QVVCVEISKKATLNGKENAKLNSLNNLEFISEDCNRFFDKECTRRQ------------NI 371 Query: 293 KTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQ 349 I DPPR GL+ T+ + ++ I YISCNP +L RDL + S + IE + FD Sbjct: 372 DVIVFDPPREGLNKTTINAIIPKSLKRIAYISCNPRTLVRDLKLFTSKGYKIEFVQPFDM 431 Query: 350 FPYTRHMECGVLLVR 364 FP T H+E LL + Sbjct: 432 FPQTYHVETLALLSK 446 >gi|260063140|ref|YP_003196220.1| RNA methyltransferase, TrmA family protein [Robiginitalea biformata HTCC2501] gi|88784709|gb|EAR15879.1| RNA methyltransferase, TrmA family protein [Robiginitalea biformata HTCC2501] Length = 509 Score = 236 bits (602), Expect = 5e-60, Method: Composition-based stats. Identities = 79/398 (19%), Positives = 137/398 (34%), Gaps = 46/398 (11%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMM---LAFQVPNLQIFRSEP--IHYRMRAEFHI----W 52 Y QL K D + Q + +P++ P +YR + EF W Sbjct: 121 GCKWQHMDYAAQLRFKQDEVVQNLVRIGKLDLPDIAPILPAPETYYYRNKMEFSFSDNRW 180 Query: 53 HDGDDLYHIMFDQQTK-----------ERMRIDYFMPGSLLINALMIEMMATIRLEPL-- 99 + ++ + + + + NA+ + + L Sbjct: 181 LEPGEIASGEPVASRNALGLHIPGMWDKILDLQECHLQADPSNAIRLAVREYAESHGLAF 240 Query: 100 -----LRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGR 154 L + + S Q +V LI D + RE + + + Sbjct: 241 FDTRKQEGLLRSLMLRNTASGQVMV-LIQFYQDDASAREGLLDFLLDRFPQITSLFYTIN 299 Query: 155 ANKTKICLDRD----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGI 209 D D + +T L +R SF Q N+ + + V A Sbjct: 300 RKGNDTLYDLDLICYHGTPYITEEMEGLAFRITPKSFYQTNSRQAYALYKKVRELAGLTG 359 Query: 210 QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269 + + +LY G G + +AR V+ +E ++EAAR N A N ++N + KE Sbjct: 360 KERVYDLYTGLGTIAQFVARQAREVIGIEAVADAIEAARVNAAENGISNTRFFAGDMKEL 419 Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDS 327 + + R + DPPR G+ V + I+Y+SCN + Sbjct: 420 FTS-----------EFLETHGRPDVVITDPPRDGMHKYVVAQLLEILPERIVYVSCNSAT 468 Query: 328 LCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 RDL+++ + + + D FP T H+E VLL R+ Sbjct: 469 QARDLALMRDAYRVAHVQPVDMFPQTHHVENIVLLERR 506 >gi|300727266|ref|ZP_07060682.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella bryantii B14] gi|299775504|gb|EFI72098.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella bryantii B14] Length = 484 Score = 236 bits (602), Expect = 5e-60, Method: Composition-based stats. Identities = 83/408 (20%), Positives = 150/408 (36%), Gaps = 70/408 (17%) Query: 9 QYEQQLAEKVDRLRQMML---AFQVPNLQIFRSEPI--HYRMRAEFHI----WH------ 53 YE+Q+ K +++ + ++P YR + EF W+ Sbjct: 96 PYEEQIKAKQKQVQDQLTRIGKIELPEFHPIMGSQKIKEYRNKLEFGCANKRWYTKEEIA 155 Query: 54 --------------DGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL 99 +G +HI + I+ L N + E+ + Sbjct: 156 ALPPKQEGETGSLTEGAIGFHITGAFD--KIYPINKCWLMDNLNNEIRNEIGQYATSHDI 213 Query: 100 -------LRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLI 152 L I + S + + +V + +H ++ E A+ L + QI + Sbjct: 214 SYYNIREQHGLLRDIMFRNSNTGEWMVLIQFHYD-EEGDHEKALGLLQHIADSFPQITSL 272 Query: 153 GRANKTK-----------ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEW 201 N K + +DY+ E + L ++ SF Q N H+ E Sbjct: 273 LYVNNQKGNDTFGDLDIEVFKGKDYIYETM----EDLKFKVGPKSFYQTNTDQAYHLYE- 327 Query: 202 VLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259 V + G+ + +LY G G + +A H +V+ +E ++E A+ N N ++N Sbjct: 328 VARNFAELNGEELVYDLYTGTGTIANFVAHHSKKVIGIEYVPEAIEDAKVNSEINGIDNT 387 Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPH 317 K+ D R I DPPR+G+ + ++ A Sbjct: 388 LFYAGDMKDILTD-----------DFIKQHGRPDVIITDPPRAGMHPDVIQVILNAAPKR 436 Query: 318 ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 I+Y+SCNP + RDL++L + + ++ D FP+T H+E V L R+ Sbjct: 437 IVYVSCNPATQARDLALLDCDYKVMQVQPVDMFPHTPHVENVVQLYRR 484 >gi|169346803|ref|ZP_02865754.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium perfringens C str. JGS1495] gi|169297085|gb|EDS79207.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium perfringens C str. JGS1495] Length = 451 Score = 236 bits (602), Expect = 5e-60, Method: Composition-based stats. Identities = 81/395 (20%), Positives = 150/395 (37%), Gaps = 53/395 (13%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI--FRSEP--IHYRMRAEFHIWHD--- 54 + YE+QL KV++++ + +VP + + P YR + E+ + Sbjct: 79 GCSSQTIPYEKQLELKVEQVKDLFKEAEVPTGEFLGIETSPIQWEYRNKMEYTFGDEEKG 138 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGSLL---INALMIEMMAT--------IRLEPLLRAK 103 G+ + ++ + +D + I ++ + LR Sbjct: 139 GELTIGMHMKGKSFGIVNVDKCVLVDEDFRNILDTTVKYFREKGLPFYKIMPRTGYLRYL 198 Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAI---------RLRDALHARKYQIQLIGR 154 + + ++++ +V L+ +D E +L+ +H + Sbjct: 199 VVRKSV---KTEEILVNLVTTTQIDFDLTEFTELIKGLNLKGKLKSIIHTESDALSEAVI 255 Query: 155 ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL 214 K I D++ E L L ++ SF Q N+ + V ++ Sbjct: 256 PEKVNILYGDDFITENLL----GLNFKISPFSFFQTNSLGAEKLYSIVRDFMGAADNKVV 311 Query: 215 -ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273 +LYCG G + A +V+ +E+ + + AA N N +NN + E + + Sbjct: 312 FDLYCGTGTIGQIAAGKASKVIGIELIEEAAMAANENAKLNGLNNCNFIAGDVAEVIKTV 371 Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRD 331 + + I +DPPRSG+ + V + P I+Y+SCNP +L D Sbjct: 372 K---------------DKPDIIILDPPRSGVHPKALDYVIKFNAPQIIYVSCNPKTLVTD 416 Query: 332 LSILS-TTHTIERLALFDQFPYTRHMECGVLLVRK 365 L +L + IE+ L D FP T H+E V L RK Sbjct: 417 LKVLEAKGYEIEKTLLMDMFPNTPHVETVVKLNRK 451 >gi|298385356|ref|ZP_06994914.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides sp. 1_1_14] gi|298261497|gb|EFI04363.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides sp. 1_1_14] Length = 472 Score = 236 bits (602), Expect = 5e-60, Method: Composition-based stats. Identities = 71/399 (17%), Positives = 142/399 (35%), Gaps = 59/399 (14%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFH------------- 50 Y +Q+ K ++ + + ++ YR + EF Sbjct: 91 PYSEQIRYKQKQVEDNLRRIGKIELPEISPILGSAKTEFYRNKLEFTFSNKRWLTNDEVR 150 Query: 51 --IWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----LRAK- 103 + +D + + + I+ + N + + LR + Sbjct: 151 QDVKYDQMNAVGFHIPGAFDKVLAIEKCWLQDDISNRIRNAVRDYAYEHGYSFINLRTQE 210 Query: 104 --LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDA-----------LHARKYQIQ 150 L + TS + + +V +I ++ +D E +L L+ + Sbjct: 211 GMLRNMIIRTSSTGELMVIVIC-KITEDHEMELFKQLLQFIADSFPEITSLLYIINNKCN 269 Query: 151 LIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ 210 + +D++ E + L ++ SF Q N+ + L + G+ Sbjct: 270 DTINDLDVHVFKGKDHMFEEM----EGLRFKVGPKSFYQTNSEQAYN-LYKIAREFAGLT 324 Query: 211 GD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268 G + +LY G G + ++R +V+ +E ++E A+ N N + N K+ Sbjct: 325 GKELVYDLYTGTGTIANFVSRQARQVIGIEYVPEAIEDAKVNAKINEIKNALFYAGDMKD 384 Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPD 326 ++ R I DPPR+G+ V ++ I+Y+SCNP Sbjct: 385 MLT-----------QEFINQHGRPDVIITDPPRAGMHQDVVDVILFAEPKRIVYVSCNPA 433 Query: 327 SLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 + RDL +L + ++ + D FP+T H+E VLL + Sbjct: 434 TQARDLQLLDGKYKVKAVQPVDMFPHTHHVENVVLLELR 472 >gi|228469545|ref|ZP_04054538.1| 23S rRNA-methyltransferase RumA [Porphyromonas uenonis 60-3] gi|228308895|gb|EEK17570.1| 23S rRNA-methyltransferase RumA [Porphyromonas uenonis 60-3] Length = 493 Score = 236 bits (601), Expect = 5e-60, Method: Composition-based stats. Identities = 84/408 (20%), Positives = 142/408 (34%), Gaps = 61/408 (14%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPNLQ-----IFRSEPIHYRMRAEFHIWHDG-------- 55 Y++QL K + M ++ + +P HYR + EF Sbjct: 91 PYDEQLRGKSQQAADAMTRIGHIAIEHTEPIVGCEDPWHYRNKVEFTFSKKRWLTEEELK 150 Query: 56 --------DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQI 107 +L + F + +D + + + E+ + L R + + Sbjct: 151 SLPEEASEQELCGVGFHKAGMFDKVLDLHGVTCQIADPIASEIRDYLNDYCLARWEEYPY 210 Query: 108 DYLTSQSDQAIVTLIYHRLLD---------DAWRECAIRLRDALHARKYQIQLIGRANKT 158 + LI L + E ++L +AL R QI + T Sbjct: 211 YDQRAHEGVMRTLLIRTTTLGGLMVLIAFAEGTEELRVQLLEALRERFPQITSLYYMVNT 270 Query: 159 K-----------ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATK 207 K + Y++E + L YR SF Q N+ + E V + Sbjct: 271 KFNDSLADLPAQLYSGAPYIEENMH----GLRYRIGPKSFYQTNSRQAERLYEKVREYAQ 326 Query: 208 GIQGDLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266 +++ +LY G G + LA+ V+ +E +VE A N N + N Sbjct: 327 LKGDEVVYDLYTGAGTIANYLAQSCRSVIGIEYVPEAVEDAFVNRDQNGITNATFYAGDM 386 Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCN 324 K D R + DPPR+G+D V ++ A I+Y+SCN Sbjct: 387 KAILTD-----------DFVAAHGRPDVLVTDPPRAGMDAPVVEVILRAAPQRIVYVSCN 435 Query: 325 PDSLCRDLSIL--STTHTIERLALFDQFPYTRHMECGVLLVRKPSGWH 370 P + RDL++L + + D FP+T H+E LL + + H Sbjct: 436 PATQARDLALLMAEGQYRAVKACAVDMFPHTHHVETVALLSKLNTEHH 483 >gi|169351042|ref|ZP_02867980.1| hypothetical protein CLOSPI_01820 [Clostridium spiroforme DSM 1552] gi|169292104|gb|EDS74237.1| hypothetical protein CLOSPI_01820 [Clostridium spiroforme DSM 1552] Length = 379 Score = 236 bits (601), Expect = 5e-60, Method: Composition-based stats. Identities = 71/388 (18%), Positives = 146/388 (37%), Gaps = 48/388 (12%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWHDGDD 57 S + Y +QL K + + ++ + ++ P YR + I Sbjct: 11 SCKYINIDYNKQLEIKTNYCKDLLKNNNLNMYKVEKIKGMQYPYEYRNKI---IVAFNQK 67 Query: 58 LYHIMFDQQTKERMRIDYFM---PGSLLI--------NALMIEMMATIRLEPLLRAKLFQ 106 +++ + + + + S LI + + R LLR L + Sbjct: 68 YEFGFYEENSHRIIPYNRCLLHEEVSDLIIKKIQSLLKRYQVSIYDEKRQRGLLRHVLIR 127 Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGR-------ANKTK 159 + DQ ++ L+ + + + L + + K + + + N+ K Sbjct: 128 RAIV---KDQTMIVLVCNDNVFKGSKNFCNELVKSFPSIKTVVLNVNKRKTSIVLGNEEK 184 Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYC 218 + + ++ + L L ++ SF Q N + + + + +++ YC Sbjct: 185 VLYGKGFIVDELC----GLTFKISPKSFYQINHEQCQALYNKAIDLLELKGDEIVIDAYC 240 Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278 G G +V A+ V+ VE+ + +++ A N N + N++ V + F + + ++ Sbjct: 241 GIGTIGMVAAKKAKEVIGVELNQDAIKDANNNARMNKIGNIRFVNDDASNFMAVLAKTKQ 300 Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILS 336 R + +DPPRSG + ++ ++YISC+P + RD+ S Sbjct: 301 ------------RVDCVIMDPPRSGSTKEFMDAIKILNPKKVVYISCDPTTQIRDIKYFS 348 Query: 337 T-THTIERLALFDQFPYTRHMECGVLLV 363 + L FD FP+T H E VLL Sbjct: 349 KLGYRGNVLYPFDMFPHTIHTETIVLLS 376 >gi|331004223|ref|ZP_08327702.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lachnospiraceae oral taxon 107 str. F0167] gi|330411496|gb|EGG90907.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lachnospiraceae oral taxon 107 str. F0167] Length = 490 Score = 236 bits (601), Expect = 5e-60, Method: Composition-based stats. Identities = 87/417 (20%), Positives = 147/417 (35%), Gaps = 76/417 (18%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL---QIFRSEPI-HYRMRAEFHIW--HDG 55 T YE QL K ++LR ++ + + S YR + EF Sbjct: 95 GCTYQTLSYENQLKLKDNQLRVLIEGATDKDFVWEGVIPSPKYLAYRNKMEFSFGDERKD 154 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRL---------------EPLL 100 +L M + + + ++ F G ++++ +++ L Sbjct: 155 GELALGMHKKGSHYDI-VNVF--GCKIVDSDFTKILELTLNFFSKRKVSYFHKNTHTGFL 211 Query: 101 RAKLFQIDYLTSQSDQAIVTL-------------------IYHRLLDDAWRECAIR---- 137 R L + + + ++VT + +L W + Sbjct: 212 RHLLIRRSEYSGEILVSLVTTSSFGFVEDPNTLLEPSVLGVDEEILIKEWADYIKEETDR 271 Query: 138 ------LRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPN 191 + LH + T + RDY+ ERL L ++ SF Q N Sbjct: 272 GILNGSIGGILHTKNDSYADAVLNQGTTLLHGRDYIIERL----NRLDFKITPFSFFQTN 327 Query: 192 AGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN 250 + + G + +LY G G + +LA ++V VEI + +VEAA N Sbjct: 328 SKGAEVLYNVAGKYLGDTAGKSVFDLYSGTGTIAQLLASESEKVYGVEIVEEAVEAAIEN 387 Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310 N +NN + + LK +D + I +DPPR G+ + Sbjct: 388 AKNNGLNNCEFIAGDV---------------LKVVDTLGFSPDIIILDPPRDGIHPKALP 432 Query: 311 MVQ--AYPHILYISCNPDSLCRDLSILS-TTHTIERLALFDQFPYTRHMECGVLLVR 364 + I+YISC P S RDL ++ + +E+ D FP T + EC VLL R Sbjct: 433 KILEFGAKRIVYISCKPTSFVRDLKVMEAAGYRMEKCVGVDMFPNTVNCECVVLLSR 489 >gi|118444301|ref|YP_878485.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium novyi NT] gi|118134757|gb|ABK61801.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium novyi NT] Length = 450 Score = 236 bits (601), Expect = 6e-60, Method: Composition-based stats. Identities = 77/391 (19%), Positives = 146/391 (37%), Gaps = 47/391 (12%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIW--HDG 55 + YE+QL K +++ ++ + + E +YR + EF G Sbjct: 79 GCSHQFLSYEKQLEIKKEQVLKLFENANISGFEFLGIQGSPEEFYYRNKMEFTFGDMEKG 138 Query: 56 DDLYHIMFDQQTK-ERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAK 103 +L M Q + D N ++ ++ R E LR Sbjct: 139 GELTLGMHAQGKSFGIISADVCKIVDSDFNLILKTVLEYFRAQGLPHYRIMSHEGYLRNL 198 Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAI------RLRDALHARKYQIQLIGRANK 157 + + T + +VT + E L LH + + +A+ Sbjct: 199 VIRKGKNTKEIMVNLVTTSQKDFDLTEFTEMLKGLNYEGELTGILHTINDSLSDVVQADS 258 Query: 158 TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-EL 216 ++ RDY+ E + L ++ SF Q N + V + ++ +L Sbjct: 259 MEVLFGRDYIMEEVL----GLKFKISPFSFFQTNTKGAEALYSIVRGFMGDAKSKVVFDL 314 Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276 YCG G + A + ++V+ +E+ + + +AA N N + N + + + + ++ Sbjct: 315 YCGTGTIGQIAAHNAEKVIGIELIEEAAKAANENAKLNGLTNCEFLAGDVAKVIKDIK-- 372 Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSI 334 + I +DPPR G+ + V + I+Y+SCNP +L DL Sbjct: 373 -------------VKPDIIILDPPRPGVHPDALKYVTKFNAKDIIYVSCNPKTLVEDLKF 419 Query: 335 L-STTHTIERLALFDQFPYTRHMECGVLLVR 364 L + E++ + D FP+T H+E V L + Sbjct: 420 LIKEGYKAEKVKVKDMFPHTPHVETVVRLTK 450 >gi|34540828|ref|NP_905307.1| RNA methyltransferase [Porphyromonas gingivalis W83] gi|50401491|sp|Q7MVG9|Y1095_PORGI RecName: Full=Uncharacterized RNA methyltransferase PG_1095 gi|34397142|gb|AAQ66206.1| RNA methyltransferase, TrmA family [Porphyromonas gingivalis W83] Length = 465 Score = 236 bits (601), Expect = 6e-60, Method: Composition-based stats. Identities = 77/408 (18%), Positives = 150/408 (36%), Gaps = 61/408 (14%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-----IFRSEPIHYRMRAEFHIWH--- 53 YE QL K ++ ++ ++ + + +YR + EF + Sbjct: 71 GCKWQHIPYEIQLRAKEQQVTDALVRLGKVEVEEMQPILGSEQTEYYRNKLEFTFSNKRW 130 Query: 54 ---------DGDDLYHIMFDQQTK------ERMRIDYFMPGSLLINALMIEMMATIRLEP 98 DGD + + + + I G+ + + + + + +P Sbjct: 131 LLPEEVQEVDGDFSPEVRYGLGFHIPGMFDKVLDIRECHLGAKVSDEIRLFIREYCMQDP 190 Query: 99 LL---------RAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQI 149 + + T+ + + +V +++ R A + + + Sbjct: 191 ERYPFFDLRNQEGLMRTLMIRTTSTGELMVVVVFFRDDVAAREALLAAVAERFPQITSLL 250 Query: 150 QLIGRA-----NKTKICL--DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWV 202 +I ++ L R+Y++E + L ++ SF Q N+ + L + Sbjct: 251 YVINTKCNDTIGDQEVLLYHGREYIEEEM----EGLKFKIGAKSFYQTNSRQA-YQLYRI 305 Query: 203 LAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK 260 G+ GD + +LY G G + +A RV+ +E ++E AR N N + N Sbjct: 306 AREFAGLTGDELVYDLYTGTGTIANFVAGQAHRVIGIEYVPEAIEDARTNSLLNGIENTL 365 Query: 261 IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHI 318 K+ D R + DPPR+G+ ++ + + A I Sbjct: 366 FYAGDMKDILT-----------NDFIEQHGRPDVVITDPPRAGMHESVIDAILFAAPRRI 414 Query: 319 LYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTRHMECGVLLVR 364 +Y+SCNP + RDL++L + + D FP+T H+E VLLVR Sbjct: 415 VYVSCNPATQARDLALLMADGRYRAVKSRPVDMFPHTHHVENVVLLVR 462 >gi|293373836|ref|ZP_06620180.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides ovatus SD CMC 3f] gi|292631235|gb|EFF49869.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides ovatus SD CMC 3f] Length = 462 Score = 236 bits (601), Expect = 6e-60, Method: Composition-based stats. Identities = 72/398 (18%), Positives = 143/398 (35%), Gaps = 57/398 (14%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFH------------- 50 Y +Q+ K ++ + + + YR + EF Sbjct: 81 PYSEQIRYKQKQVEDNLRRIGKIELPEISPILGSDKTEFYRNKLEFTFSNKRWLTNEEVR 140 Query: 51 --IWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----LRAK- 103 + +D + + + I+ + N + + LR + Sbjct: 141 QDVKYDQMNAVGFHIPGAFDKVLAIEKCWLQDNISNHIRNAVRDYAYEHDYSFINLRTQE 200 Query: 104 --LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLR---DALHARKYQIQLIGRA-NK 157 L + TS + + +V +I D + L+ D+ + +I N Sbjct: 201 GMLRNMIIRTSSTGELMVIVICKITEDHEMKLFKQLLQFVADSFPEITSLLYIINNKCND 260 Query: 158 T------KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG 211 T + +D++ E + L ++ SF Q N+ + L + + G Sbjct: 261 TINDLDVHVFKGKDHIFEEM----EGLRFKVGPKSFYQTNSEQAYN-LYKIARNFAELTG 315 Query: 212 D--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269 + + +LY G G + ++R +V+ +E ++E A+ N N + N K+ Sbjct: 316 NELVYDLYTGTGTIANFVSRQARQVIGIEYVPEAIEDAKVNAEINDIKNAIFYAGDMKDM 375 Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDS 327 +D R I DPPR+G+ + ++ I+Y+SCNP + Sbjct: 376 LT-----------QDFINQHGRPDVIITDPPRAGMHQDVIDVILFAEPKRIVYVSCNPAT 424 Query: 328 LCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 RDL +L+ + ++ + D FP+T H+E VLL + Sbjct: 425 QARDLQLLNEKYKVKAVQPVDMFPHTHHVENVVLLKLR 462 >gi|307244550|ref|ZP_07526655.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Peptostreptococcus stomatis DSM 17678] gi|306492077|gb|EFM64125.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Peptostreptococcus stomatis DSM 17678] Length = 455 Score = 236 bits (601), Expect = 6e-60, Method: Composition-based stats. Identities = 79/393 (20%), Positives = 149/393 (37%), Gaps = 50/393 (12%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHI---WHD 54 ++L YE+QL K +++ ++ + + YR + EF + D Sbjct: 79 GCSILSIPYEKQLEIKRNQILELFDKAGIKDYDFLGIQGSPSQYAYRNKMEFTFGDEYKD 138 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMI-----------EMMATIRLEPLLRAK 103 G + + + + +D +M+ T + LR Sbjct: 139 GPLSLGMHKVGRFIDIVTVDDCRIIDEDFRKIMVGTRDYFEEKGLPYYRTFNHQGYLRHL 198 Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAI------RLRDALHARKYQIQLIGRANK 157 + + T + IVT + +++ + +L LH + + ++ Sbjct: 199 VVRRGENTGEIMVNIVTSSQVDYRMEDYKDFLLGLDLENQLVGILHTINDGLADAVQCDE 258 Query: 158 TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD---LL 214 +I RDY E + L ++ SF Q N +L + G +GD + Sbjct: 259 LRILHGRDYFYEEVL----GLRFKISPFSFFQTNTKGAE-VLYTIAREFAGDKGDGKVVF 313 Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274 +LY G G ++A+ +V +E+ + +V AA +N N ++N + + + ++ Sbjct: 314 DLYSGTGTIGQLMAKTAKKVYGIELVEEAVVAANHNAGLNKLDNCEFIAGDVAKLVTSL- 372 Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDL 332 + I VDPPR+G+ V + I+Y+SCNP SL ++ Sbjct: 373 --------------PEKADLIIVDPPRAGILGNGVKDIAEFGAGEIVYVSCNPKSLVENV 418 Query: 333 SIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364 S + +++L L D FP H E LLVR Sbjct: 419 VEFESRGYKLDKLKLMDMFPSGPHCESVALLVR 451 >gi|306820250|ref|ZP_07453891.1| 23S rRNA (uracil-5-)-methyltransferase [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304551704|gb|EFM39654.1| 23S rRNA (uracil-5-)-methyltransferase [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 452 Score = 236 bits (601), Expect = 6e-60, Method: Composition-based stats. Identities = 80/392 (20%), Positives = 148/392 (37%), Gaps = 46/392 (11%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ---IFRSE-PIHYRMRAEFHIWHDGDD 57 ++L Y+ QL+ K ++L ++ ++ I S Y+ + EF ++ D Sbjct: 79 GCSMLSVDYDNQLSLKSEQLTKLFHKNGHTEVEKIDIVPSPLQKEYKNKMEFTFGNEVKD 138 Query: 58 LYHIMFDQQTK---ERMRIDYFMPGSLLIN-----------ALMIEMMATIRLEPLLRAK 103 ++ + + ++ + A + E LR Sbjct: 139 GELLIGLHKKNSPMGIVSVEDCLLVDEDYRTILKMTGEYFRAKNLPHYHIKSHEGYLRHL 198 Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLR------DALHARKYQIQLIGRANK 157 + + T Q IVT + + L+ LH + + +K Sbjct: 199 VIRKGENTKQLLINIVTTSQIDFDLSEYVQKLQALKLESTIVGILHTTNDSLSDTVKDDK 258 Query: 158 TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELY 217 + +Y + L ++ SF Q N + + + G + + +LY Sbjct: 259 VDVLFGDNYFYDILLGN----KFKISPFSFFQTNTKGAETLYKTAMEMIDGEKDIIFDLY 314 Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277 G G + L+ +V+ +EI + +VE AR N AN+V NV+ + KE Sbjct: 315 SGTGTIGISLSARAKKVIGIEIVEEAVEMARENAQANNVKNVEFIAGDVKE--------- 365 Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSIL 335 ++ + + I +DPPR+G++ + + + ILYISCNP L +DL +L Sbjct: 366 ------EVSKLTNSPQLIILDPPRAGINPKALKDIIGFNSKQILYISCNPKMLVQDLKVL 419 Query: 336 -STTHTIERLALFDQFPYTRHMECGVLLVRKP 366 + I ++ D F T H E VL+ RK Sbjct: 420 KEAGYEIAKVKGVDMFANTYHCETVVLMSRKD 451 >gi|313886024|ref|ZP_07819762.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Porphyromonas asaccharolytica PR426713P-I] gi|312924554|gb|EFR35325.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Porphyromonas asaccharolytica PR426713P-I] Length = 493 Score = 236 bits (601), Expect = 6e-60, Method: Composition-based stats. Identities = 87/408 (21%), Positives = 142/408 (34%), Gaps = 61/408 (14%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPNLQ-----IFRSEPIHYRMRAEFHIWHDG-------- 55 YE+QL K + M ++ + +P HYR + EF Sbjct: 91 PYEEQLRGKAQQAADAMTRIGHIAIEHTEPIVGCEDPWHYRNKVEFTFSKKRWLTEEELK 150 Query: 56 --------DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQI 107 +L + F + +D + + + E+ + L R + + Sbjct: 151 SLPEEASEQELCGVGFHKAGMFDKVLDLHGVTCQIADPIASEIRDYLNDYCLARWEEYPY 210 Query: 108 DYLTSQSDQAIVTLIYHRLLD---------DAWRECAIRLRDALHARKYQIQLIGRANKT 158 + LI L + E I+L +AL R QI + T Sbjct: 211 YDQRAHEGVMRTLLIRTTTLGGLMVLIAFAEGTEELRIQLLEALRMRFPQITSLYYMVNT 270 Query: 159 K-----------ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATK 207 K + Y++E + L YR SF Q N+ + E V + Sbjct: 271 KFNDSLADLPAQLYSGAPYIEEDMH----GLRYRIGPKSFYQTNSRQAERLYEKVREYAQ 326 Query: 208 GIQGDLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266 +++ +LY G G + LA+ V+ +E +VE A N N + N Sbjct: 327 LTGDEVVYDLYTGAGTIANYLAQSCRSVIGIEYVPEAVEDAFVNRDQNGITNATFYAGDM 386 Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCN 324 K D R + DPPR+G+D V ++ A I+Y+SCN Sbjct: 387 KAILTD-----------DFVAAHGRPDVLVTDPPRAGMDTPVVDVILRAAPQRIVYVSCN 435 Query: 325 PDSLCRDLSIL--STTHTIERLALFDQFPYTRHMECGVLLVRKPSGWH 370 P + RDL++L + R D FP+T H+E LL + + H Sbjct: 436 PATQARDLALLMAEGQYRAVRACAVDMFPHTHHVETVALLSKLNTEHH 483 >gi|29346053|ref|NP_809556.1| RNA methyltransferase [Bacteroides thetaiotaomicron VPI-5482] gi|50401554|sp|Q8AA22|Y643_BACTN RecName: Full=Uncharacterized RNA methyltransferase BT_0643 gi|29337947|gb|AAO75750.1| RNA methyltransferase [Bacteroides thetaiotaomicron VPI-5482] Length = 454 Score = 236 bits (601), Expect = 6e-60, Method: Composition-based stats. Identities = 71/399 (17%), Positives = 142/399 (35%), Gaps = 59/399 (14%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFH------------- 50 Y +Q+ K ++ + + ++ YR + EF Sbjct: 73 PYSEQIRYKQKQVEDNLRRIGKIELPEISPILGSAKTEFYRNKLEFTFSNKRWLTNDEVR 132 Query: 51 --IWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----LRAK- 103 + +D + + + I+ + N + + LR + Sbjct: 133 QDVKYDQMNAVGFHIPGAFDKVLAIEKCWLQDDISNRIRNAVRDYAYEHDYSFINLRTQE 192 Query: 104 --LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDA-----------LHARKYQIQ 150 L + TS + + +V +I ++ +D E +L L+ + Sbjct: 193 GMLRNLIIRTSSTGELMVIVIC-KITEDHEMELFKQLLQFIADSFPEITSLLYIINNKCN 251 Query: 151 LIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ 210 + +D++ E + L ++ SF Q N+ + L + G+ Sbjct: 252 DTINDLDVHVFKGKDHMFEEM----EGLRFKVGPKSFYQTNSEQAYN-LYKIAREFAGLT 306 Query: 211 GD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268 G + +LY G G + ++R +V+ +E ++E A+ N N + N K+ Sbjct: 307 GKELVYDLYTGTGTIANFVSRQARQVIGIEYVPEAIEDAKVNAEINEIKNALFYAGDMKD 366 Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPD 326 ++ R I DPPR+G+ V ++ I+Y+SCNP Sbjct: 367 MLT-----------QEFINQHGRPDVIITDPPRAGMHQDVVDVILFAEPKRIVYVSCNPA 415 Query: 327 SLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 + RDL +L + ++ + D FP+T H+E VLL + Sbjct: 416 TQARDLQLLDGKYKVKAVQPVDMFPHTHHVENVVLLELR 454 >gi|294674202|ref|YP_003574818.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella ruminicola 23] gi|294473371|gb|ADE82760.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella ruminicola 23] Length = 483 Score = 236 bits (601), Expect = 6e-60, Method: Composition-based stats. Identities = 79/409 (19%), Positives = 142/409 (34%), Gaps = 68/409 (16%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPNLQIFRS-----EPIHYRMRAEFHIWHDG---DDLYH 60 YE+QL K ++ + L F YR + +F + + Sbjct: 91 PYEEQLKFKQQQVYDQLHRIGKIELPEFMPILGSVHTQEYRNKLDFGCANKRYLTKEQIQ 150 Query: 61 IMFDQQTK-----------------ERMRIDYFMPGSLLINALMIEMMATIRLEPL---- 99 + + +++ + + I+ L N + E L Sbjct: 151 TLPNDESQSLKDVPAIGFHITGAFDKILPIEKCWLMDNLQNEIRNEAREYAMANGLSFFD 210 Query: 100 LRA---KLFQIDYLTSQSDQAIVTLIYHR---------LLDDAWRECAIRLRDALHARKY 147 LRA L I S S + +V +H ++ + + D Sbjct: 211 LRAQVGLLRDIIIRNSASGEWMVIFQFHYDRTSAEALAQSEEQAKGLLQHIADKFPQITS 270 Query: 148 QIQLIGRA-----NKTKICL--DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLE 200 + L + +I + D++ E + L ++ SF Q N H+ Sbjct: 271 LMYLDNQKCNDTIGDQEILVFKGIDHIYELM----EDLKFKVGPKSFYQTNTEQAYHLYS 326 Query: 201 WVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN 258 V G+ G+ + +LY G G + +A+ +V+ +E ++E A+ N N + N Sbjct: 327 -VARNFAGLTGNELVYDLYTGTGTIANFVAKKARKVIGIEYVPEAIEDAKINSEVNKIGN 385 Query: 259 VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYP 316 K+ ++ I DPPR+G+ V + A Sbjct: 386 TLFYAGDMKDILT-----------EEFIAEHGHPDVIITDPPRAGMHPDVVKTILGAAPK 434 Query: 317 HILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 I+Y+SCNP + RDL L + + + D FP+T H+E VLL R+ Sbjct: 435 RIVYVSCNPATQARDLHDLDVDYRVAAVQPVDMFPHTPHVENVVLLERR 483 >gi|115435048|ref|NP_001042282.1| Os01g0193600 [Oryza sativa Japonica Group] gi|9988445|dbj|BAB12711.1| putative RNA methyltransferase [Oryza sativa Japonica Group] gi|10934074|dbj|BAB16852.1| putative RNA methyltransferase [Oryza sativa Japonica Group] gi|113531813|dbj|BAF04196.1| Os01g0193600 [Oryza sativa Japonica Group] gi|215697095|dbj|BAG91089.1| unnamed protein product [Oryza sativa Japonica Group] Length = 557 Score = 236 bits (601), Expect = 6e-60, Method: Composition-based stats. Identities = 75/434 (17%), Positives = 150/434 (34%), Gaps = 89/434 (20%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEP--------------IHYRMRA 47 Y Q+ K ++R++++ F + + S YR + Sbjct: 139 GCKAQSLAYAAQIRHKHLQVRELLVNFGKFDPRKMESSEPDAILKPIVPCDEIFRYRNKM 198 Query: 48 EFHI---------WHDGDDLYHIM--------FDQQTK------ERMRIDYFMPGSLLIN 84 EF W + D + + + + ++ + S + Sbjct: 199 EFSFGTKRWMQREWKEEKDDEVVKEEKVEGDGYSLGLHAPGFFDKVLHVEKCLLQSEPAD 258 Query: 85 ALMIEMMATIRLEPL-------------LRAKLFQID-YLTSQSDQAIV---TLIYHRLL 127 ++ + T L L+ + + +T+ + + +V T Y L Sbjct: 259 KVLAIVQETWLDPALGLTPYDVHKHVGFLKHLMIRTGRNITTGAPEVMVNFVTSCYKPEL 318 Query: 128 DDAWRECAIRLRD---ALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + ++ + ++ + + + + E L R L ++ Sbjct: 319 LEPLVNNITKIPEVVSIMNNVNTSVGNTSVGEEEYTLYGKPTITEML----RGLTFQISA 374 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD----LLELYCGNGNFSLVLARHFDRVLAVEIA 240 NSF Q N +L ++ + G++GD +L+L+CG G L LAR V E+ Sbjct: 375 NSFFQTNTKQAD-VLYKLIGESAGLKGDGSEIILDLFCGTGTIGLTLARRAKHVYGYEVV 433 Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300 ++ A+ N N ++N V+ + + +E + I DP Sbjct: 434 PEAIADAKKNAKLNGISNATFVQGDLNKINETFGKEF------------PKPDIIISDPN 481 Query: 301 RSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTT---------HTIERLALFDQ 349 R G+ + + P I+Y+SCNP + RDL L + ++ + D Sbjct: 482 RPGMHMKLIKWLLEVKAPRIVYVSCNPATCARDLDYLCHGVEEKDLKGCYELKTVIPVDM 541 Query: 350 FPYTRHMECGVLLV 363 FP+T H+EC +L Sbjct: 542 FPHTPHIECICVLE 555 >gi|152984405|ref|YP_001349925.1| 23S rRNA 5-methyluridine methyltransferase [Pseudomonas aeruginosa PA7] gi|150959563|gb|ABR81588.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Pseudomonas aeruginosa PA7] Length = 452 Score = 236 bits (601), Expect = 6e-60, Method: Composition-based stats. Identities = 86/374 (22%), Positives = 139/374 (37%), Gaps = 36/374 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWHDGDD 57 TL + +QLA K L++ + F + YR RA + + Sbjct: 101 GCTLQHLGHAEQLALKQRTLQEQLQRFAGMEPEEWAPPLVGPEFGYRRRARIAVRWEPKS 160 Query: 58 LY--HIMFDQQTKERMRIDYFM---PGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTS 112 ++E + D + P I + ++ + ++ Sbjct: 161 RRLEVGFRASSSQEIVAFDECLVLVPALQTIAQALPALLQGFCKPEAIGHVELFHGTASA 220 Query: 113 QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLT 172 + V L E RL D + Q+ L G A++ + + L Sbjct: 221 LLLRHTVALAV---------EDRRRLEDFCAEHQAQLWLQG-ADEPRPVEPAAELGYALD 270 Query: 173 VAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHF 231 TL YR F Q NA +N M+ L G + +L+L+CG GNFSL LAR Sbjct: 271 DWKLTLAYR--PGDFVQVNAPVNRLMVRQALEWLAPGAEERVLDLFCGLGNFSLPLARQV 328 Query: 232 DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291 +V+ VE V A N AN ++N + + L + + Sbjct: 329 AQVVGVEGVAAMVGRASANALANGLDNAHFFQADLSKA------------LAEAPWAAQG 376 Query: 292 FKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSILS-TTHTIERLALFDQ 349 F + +DPPR G +A GM ++Y+SCNP +L RD ++ + ++R + D Sbjct: 377 FTAVLLDPPRDGALEAVRGMSSLGARRVVYVSCNPATLARDAGEMARQGYRLKRAGILDM 436 Query: 350 FPYTRHMECGVLLV 363 FP T H+E L Sbjct: 437 FPQTAHVEAMALFE 450 >gi|300173743|ref|YP_003772909.1| RNA m5u methyltransferase family [Leuconostoc gasicomitatum LMG 18811] gi|299888122|emb|CBL92090.1| RNA m5u methyltransferase family [Leuconostoc gasicomitatum LMG 18811] Length = 458 Score = 235 bits (600), Expect = 7e-60, Method: Composition-based stats. Identities = 72/386 (18%), Positives = 141/386 (36%), Gaps = 45/386 (11%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQV---PNLQIFRSEPIHYRMRAEFHIWHDGDDLYHI 61 L+ +Y+ QL K +++++ + I P +YR + + L Sbjct: 90 LVNLKYDAQLELKQSQIKKLFQEKNIAVAVEPTIGMENPTYYRNKTIVPVKWQEGHLTSG 149 Query: 62 MFDQQTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKLFQIDYL 110 + + + E + + + I+ +I++ + + +R + + Y Sbjct: 150 FYRRGSHELVPMTDYFVNDQAIDQAIIKVRQVLENYNITAFDPDFEKGTIRYIMIRRGYY 209 Query: 111 TSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANK-------TKICLD 163 S + +V L+ + + +E + L K + + Sbjct: 210 ---SHELMVVLVSNESALNFEKEIVKDIVAQLPEIKSLLFNFSPKKDFVLLSPNNRTLWG 266 Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGN 222 D + + L + NSF Q N + + D +++ Y G G Sbjct: 267 EDAIHDILL----GYDFIIGPNSFYQVNPQTTEVLYDLAAKKAALKPTDLVIDAYSGIGT 322 Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282 + +A +V+ VE+ +V A+ N+ AN++NN + + + + ER Sbjct: 323 IGITIANQVRQVIGVEVIPGAVADAQINVRANNINNADYILADAPKQFAKWQSER----- 377 Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDL-SILSTTH 339 R +FVDPPR GL + +YISCNP +L RD I+ + Sbjct: 378 -------LRPNVVFVDPPRRGLTRELIQATTEMGPDKFVYISCNPVTLVRDAVEIIRNGY 430 Query: 340 TIER-LALFDQFPYTRHMECGVLLVR 364 I+ + DQFP T H+E + + Sbjct: 431 HIDGPIVPVDQFPQTSHIESITIFKK 456 >gi|291543770|emb|CBL16879.1| 23S rRNA m(5)U-1939 methyltransferase [Ruminococcus sp. 18P13] Length = 451 Score = 235 bits (600), Expect = 7e-60, Method: Composition-based stats. Identities = 70/388 (18%), Positives = 124/388 (31%), Gaps = 39/388 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFR----SEPIHYRMRAEFHIWHDGDD 57 Y+ + K + + + PI YR +A++ + Sbjct: 80 GCAFRHMTYQAECNVKQQVVEDAFVRIGGLHPVFLPILGCDTPIGYRNKAQYPVGMQNGQ 139 Query: 58 LYHIMFDQQTKERMRIDYFM-----------PGSLLINALMIEMMATIRLEPLLRAKLFQ 106 + +++ + + I ++ R LLR + Sbjct: 140 AVCGFYAKRSHRIVPYTHCALQPPLFGEILEAALEHIRQQGLQPYDEQRGTGLLRHLYLR 199 Query: 107 IDYLTSQSDQAIVTLIYHR----LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162 Y + + V R L + +L + +T+ L Sbjct: 200 QGYHSGEVMLCFVVTRPAREQLMPLSQQLQHRFPQLTSICMNVNPARTNVILGKRTETLL 259 Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNG 221 + + + + + ++F Q N + A + LL+LYCG G Sbjct: 260 GQAAIRDTMC----GIRVELSPHAFYQVNTAQAERLYGIAREFAQLDGRQSLLDLYCGTG 315 Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281 L +A + VE+ +VE A N N + N Sbjct: 316 TIGLSMADGVKHLTGVEVIPQAVENAIRNARENRIENADFHVGD------------AAQW 363 Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST-T 338 + + I +DPPR G D T+ V A I+ ISCNP + RD ++L Sbjct: 364 AQQLAQRGEHPDVIVLDPPRKGCDAQTLEAVCRMAPQRIVMISCNPATAARDCALLDKMG 423 Query: 339 HTIERLALFDQFPYTRHMECGVLLVRKP 366 + +++ D FP T H+EC VL+ RK Sbjct: 424 YHAQKVQAVDLFPRTGHVECVVLMSRKK 451 >gi|253568537|ref|ZP_04845948.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|251842610|gb|EES70690.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] Length = 472 Score = 235 bits (600), Expect = 7e-60, Method: Composition-based stats. Identities = 71/399 (17%), Positives = 142/399 (35%), Gaps = 59/399 (14%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFH------------- 50 Y +Q+ K ++ + + ++ YR + EF Sbjct: 91 PYSEQIRYKQKQVEDNLRRIGKIELPEISPILGSAKTEFYRNKLEFTFSNKRWLTNDEVR 150 Query: 51 --IWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----LRAK- 103 + +D + + + I+ + N + + LR + Sbjct: 151 QDVKYDQMNAVGFHIPGAFDKVLAIEKCWLQDDISNRIRNAVRDYAYEHDYSFINLRTQE 210 Query: 104 --LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDA-----------LHARKYQIQ 150 L + TS + + +V +I ++ +D E +L L+ + Sbjct: 211 GMLRNMIIRTSSTGELMVIVIC-KITEDHEMELFKQLLQFIADSFPEITSLLYIINNKCN 269 Query: 151 LIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ 210 + +D++ E + L ++ SF Q N+ + L + G+ Sbjct: 270 DTINDLDVHVFKGKDHMFEEM----EGLRFKVGPKSFYQTNSEQAYN-LYKIAREFAGLT 324 Query: 211 GD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268 G + +LY G G + ++R +V+ +E ++E A+ N N + N K+ Sbjct: 325 GKELVYDLYTGTGTIANFVSRQARQVIGIEYVPEAIEDAKVNAEINEIKNALFYAGDMKD 384 Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPD 326 ++ R I DPPR+G+ V ++ I+Y+SCNP Sbjct: 385 MLT-----------QEFINQHGRPDVIITDPPRAGMHQDVVDVILFAEPKRIVYVSCNPA 433 Query: 327 SLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 + RDL +L + ++ + D FP+T H+E VLL + Sbjct: 434 TQARDLQLLDGKYKVKAVQPVDMFPHTHHVENVVLLELR 472 >gi|152995281|ref|YP_001340116.1| RNA methyltransferase [Marinomonas sp. MWYL1] gi|150836205|gb|ABR70181.1| RNA methyltransferase, TrmA family [Marinomonas sp. MWYL1] Length = 440 Score = 235 bits (600), Expect = 7e-60, Method: Composition-based stats. Identities = 92/363 (25%), Positives = 155/363 (42%), Gaps = 32/363 (8%) Query: 11 EQQLAEKVDRLRQMMLA-FQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69 EQQL+ K D L+ + L+ P YR RA I + + +KE Sbjct: 103 EQQLSAKADWLQGQLRNLITTQELETLSDTPTGYRRRARLAIDIKKGRMVLGFRGKASKE 162 Query: 70 RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDD 129 + ID + + + + + + + L L ++ L + + + + D+ Sbjct: 163 IISIDQCVVLTPNLQSTFLLLKLKLLEND-LAGVLGHVELLEDTKGVSALFRLTSPISDE 221 Query: 130 ---AWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS 186 AW + A + R AL+ + ++ K ++ L ++ L + Sbjct: 222 LKNAWEDWAEKGRVALYWQAPKV------GKAEVAL-----EKMRYYDLGDLRLKYHPQD 270 Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 F Q NA +N M+ + + D+ L+L+CG GNFSL LA H V+ VE+ + VE Sbjct: 271 FIQVNAAMNQKMVVQAMDWLNPSKQDVILDLFCGVGNFSLPLAVHAQAVIGVEVQETMVE 330 Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD 305 AAR N N +N+ V + N L I + +DPPR+G Sbjct: 331 AARENARVNGFDNLSFVAADLTK--------PVNNELFKQTI-----TKVLLDPPRAGAF 377 Query: 306 DATVGMVQAYP-HILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLV 363 + +++ P ILY+SCN +L RD L + + + R++L D FP T H+E +LL Sbjct: 378 EFLDSIIKIGPTQILYVSCNASTLARDAEYLVAKGYRVLRVSLMDMFPQTSHVETMMLLQ 437 Query: 364 RKP 366 +K Sbjct: 438 KKK 440 >gi|189466070|ref|ZP_03014855.1| hypothetical protein BACINT_02440 [Bacteroides intestinalis DSM 17393] gi|189434334|gb|EDV03319.1| hypothetical protein BACINT_02440 [Bacteroides intestinalis DSM 17393] Length = 476 Score = 235 bits (600), Expect = 7e-60, Method: Composition-based stats. Identities = 70/400 (17%), Positives = 140/400 (35%), Gaps = 58/400 (14%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFH------------- 50 Y +Q+ K ++ + + + YR + E+ Sbjct: 91 PYSEQIKYKQKQVTDNLTRIGKIELPEISPILGSEKTQFYRNKLEYTFSNKRWLTEEEVK 150 Query: 51 --IWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----LRAK- 103 + +D + + + I+ + N + + LR + Sbjct: 151 QNVVYDQMNAVGFHIPNAFDKVLAIEKCWLQDDISNRIRNAVRDYAYEHDYSFINLRTQE 210 Query: 104 --LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRL----RDALHARKYQIQLIGRANK 157 L + TS + + +V L+ ++ + +L D + +I Sbjct: 211 GMLRNMIIRTSTTGELMVILVAKIEEEERELQLFKQLLQYVADTFPEITSLLYIINNKRN 270 Query: 158 TKICL-------DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ 210 I +D++ E + L ++ SF Q N+ + L + G+ Sbjct: 271 DTITDLDVHTFKGKDHIFEEM----EGLRFKIGPKSFYQTNSEQAYN-LYKIARNFAGLT 325 Query: 211 GD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268 G + +LY G G + +++ +V+ +E ++E A+ N N + N K+ Sbjct: 326 GKELVYDLYTGTGTIANFVSKQARQVIGIEYVPEAIEDAKVNAEINGIENTLFFAGDMKD 385 Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPD 326 +D R I DPPR+G+ V ++ I+Y+SCNP Sbjct: 386 MLT-----------QDFINQYGRPDVIITDPPRAGMHQDVVDVILFAEPKRIVYVSCNPA 434 Query: 327 SLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRKP 366 + RDL +L + ++ + D FP+T H+E VLL + Sbjct: 435 TQARDLQLLDVKYKVKAVQPVDMFPHTHHVENVVLLELRN 474 >gi|150024827|ref|YP_001295653.1| RNA methyltransferase [Flavobacterium psychrophilum JIP02/86] gi|149771368|emb|CAL42837.1| Probable RNA methyltransferase [Flavobacterium psychrophilum JIP02/86] Length = 471 Score = 235 bits (600), Expect = 7e-60, Method: Composition-based stats. Identities = 72/403 (17%), Positives = 131/403 (32%), Gaps = 54/403 (13%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFR-----SEPIHYRMRAEFHIWH--- 53 +Y QQL K + + + + F + YR + EF + Sbjct: 85 GCKWQNMKYSQQLFYKQNEVFNNLKRIGKVEMPEFETILGSEKQFFYRNKMEFGFSNARW 144 Query: 54 ------------DGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATI------R 95 D + + + + I NA+ E+ Sbjct: 145 MTEAEIKSDQEFDDRNALGFHIPKMWDKILDITKCHLQGDPSNAIRNEIRRFAIENNLEF 204 Query: 96 LEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRA 155 P L + + + S I+ LI + RE + +Q + Sbjct: 205 FNPRNHEGLLRTLMIRTASTGEIMVLIQFFEENKVQRELIMNHLAETFPEITSLQYVING 264 Query: 156 NKTKICL--------DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATK 207 RDY+ E + L + SF Q N+ L + Sbjct: 265 KPNDTIYDQDIKLFKGRDYILEEM----EGLHFSINAKSFYQTNSEQAYE-LYKITRDFA 319 Query: 208 GIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265 G+ G+ + +LY G G + +++ +V+ VE ++ A+ N N+++N + Sbjct: 320 GLTGNELVYDLYTGTGTIAQFVSKQAKKVIGVEAVPEAIADAKENAKRNNISNCEFFVGD 379 Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISC 323 K I DPPR G+ V + ++Y+SC Sbjct: 380 MKNVFND-----------AFIAQHGHPDVIITDPPRDGMHADVVKQILSIGAEKVVYVSC 428 Query: 324 NPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRKP 366 N + RDL+++ + + R+ D FP T H+E VLL ++ Sbjct: 429 NSATQARDLALMDEMYQVTRVRPVDMFPQTHHVENVVLLEKRK 471 >gi|167772924|ref|ZP_02444977.1| hypothetical protein ANACOL_04312 [Anaerotruncus colihominis DSM 17241] gi|167664857|gb|EDS08987.1| hypothetical protein ANACOL_04312 [Anaerotruncus colihominis DSM 17241] Length = 472 Score = 235 bits (600), Expect = 8e-60, Method: Composition-based stats. Identities = 76/390 (19%), Positives = 141/390 (36%), Gaps = 41/390 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL--QIFRSEPI--HYRMRAEFHIWHDGDD 57 YE +L K ++Q + L + P+ YR +A++ + Sbjct: 99 GCVFRHISYEAELRCKQAFVQQNLRRIGKLELAAEPIEPSPVTDGYRNKAQYPVRMQKGG 158 Query: 58 LYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKLFQ 106 L F +T E + + L+ +++ + L+R + Sbjct: 159 LCAGFFAPRTHEVIDCHTCKLQPPVFGELLEAVLSYMHTYHVSAYDESLGAGLIRHVYLR 218 Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWREC----AIRLRDALHARKYQIQLIGRANKTKICL 162 + + Q +V H ++A + + L + + +++ Sbjct: 219 RGHRSGQIMVCLVVNGTHLPNENALVDLLLSRCGEIVSILLNVNERNTNVIIGEHSRVLY 278 Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGN 220 + + + L + + SF Q N+ +L V A + G LL+LYCG Sbjct: 279 GKPAISDVLC----GVRFELSAQSFYQVNSPGAE-LLYGVAAEFAALTGTETLLDLYCGA 333 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G L LA +V+ VE+ +VE A N A N + N + + + + RE Sbjct: 334 GTIGLSLAHLCRQVIGVEVVPQAVENAVANAARNGIKNARFFCADAGQAAARLARE---- 389 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDL-SILST 337 R I +DPPR G + V A ++ +SC+ ++ RD ++ + Sbjct: 390 --------GVRPDVIVLDPPRKGCAPEVLDAVAAMAPRRVVMVSCDSATMARDCAALAAA 441 Query: 338 THTIERLALFDQFPYTRHMECGVLLVRKPS 367 ++ R D FP T H+E +L R S Sbjct: 442 GYSPRRCRPVDMFPRTAHVEAVAVLSRLKS 471 >gi|158319773|ref|YP_001512280.1| RNA methyltransferase [Alkaliphilus oremlandii OhILAs] gi|158139972|gb|ABW18284.1| RNA methyltransferase, TrmA family [Alkaliphilus oremlandii OhILAs] Length = 450 Score = 235 bits (600), Expect = 8e-60, Method: Composition-based stats. Identities = 79/390 (20%), Positives = 146/390 (37%), Gaps = 46/390 (11%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQV-PNLQIFRSEPI--HYRMRAEFHIW---HDG 55 T YE +LA K ++R + + N + P YR + E+ G Sbjct: 79 GCTYQTLSYENELALKEKQIRSLFEKEGLHVNFLGIEASPSIKAYRNKMEYTFGDEERGG 138 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGSL---LIN--------ALMIEMMATIRLEPLLRAKL 104 + + E + LI + + + +LR + Sbjct: 139 PLSLGLHMKNRFYESVNTWDCNIVDEDFTLIRESIRDYFEQKKVPFYNKRQHKGVLRHLV 198 Query: 105 FQIDYLTSQSDQAIVTL----IYHRLLDDAWRECAI--RLRDALHARKYQIQLIGRANKT 158 + +S+ +VT I+H L D + R+ LH + +A++ Sbjct: 199 IRKAVSSSEILVNLVTTSQSPIHHEALKDMILSLNLSGRIAGILHTINDGLGDTVKADQM 258 Query: 159 KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELY 217 ++ RDY+ E L L ++ SF Q N+ + I + +LY Sbjct: 259 ELLYGRDYIVEELL----GLKFKISPFSFFQTNSLGAEKLYTIAREFAGDIDDKIVFDLY 314 Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277 G G + ++A +V+ +EI + +VE A+ N N ++NV+ + E ++ Sbjct: 315 SGTGTIAQIMAPVAKKVIGIEIVEEAVEMAKENAKMNGLDNVEFIAGDVLEAVNDLKE-- 372 Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSIL 335 + I +DPPR G+ + + + +Y+SCNP +L RDL + Sbjct: 373 -------------KPDLIVIDPPRDGIHPKAIHKIIDFNPDTFVYVSCNPVTLVRDLKVF 419 Query: 336 -STTHTIERLALFDQFPYTRHMECGVLLVR 364 + +E++ L D F T H+E L + Sbjct: 420 MERGYRVEKVKLMDMFARTNHVETVCKLEK 449 >gi|160915760|ref|ZP_02077968.1| hypothetical protein EUBDOL_01775 [Eubacterium dolichum DSM 3991] gi|158432236|gb|EDP10525.1| hypothetical protein EUBDOL_01775 [Eubacterium dolichum DSM 3991] Length = 451 Score = 235 bits (600), Expect = 8e-60, Method: Composition-based stats. Identities = 81/388 (20%), Positives = 147/388 (37%), Gaps = 40/388 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLA--FQVPNLQIF-RSEPIHYRMRAEFHIWHDGDDL 58 S L+ + Q K +++ ++ +P + P HYR + D Sbjct: 80 SCQLMHRKQSNQAQYKKEQVVELCKKQRLSIPVEDVLCAGNPYHYRNKMIIGFQKGRDKR 139 Query: 59 Y-HIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLFQ 106 +++ + + + + LI L IE+ R LLR L + Sbjct: 140 IKAGFYEEFSHRIIPYEACLLHPKECDDIVQSIVSLIQKLAIEIYDEDRRTGLLRHVLIR 199 Query: 107 IDYLTSQSDQAIVTLIYH----RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162 +T Q V R L + + + + + I N+ +I Sbjct: 200 YGKVTKQIMVVFVVSSNVFPARRKLVEELLKAHPNITTIVQNVNPRKTSIVLGNEERILY 259 Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNG 221 + Y+++ L L ++ SF Q N + L ++ L+ YCG G Sbjct: 260 GKGYIEDILC----GLRFKISCKSFYQINHDQCEVLYTKALDKLMLTGNEVVLDAYCGIG 315 Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281 + +A +V+ VE+ K +V+ A N N + N++ + + F + + ++ Sbjct: 316 TIGMCVASKVKQVIGVELNKDAVKDAIQNAKLNRIRNIRFLCDDAGSFMSQLAKAQQ--- 372 Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST-T 338 + +DPPRSG + P ILYISCNP++ RD+ +L Sbjct: 373 ---------TLDVLIMDPPRSGSSQEFLSSAARLRVPKILYISCNPNTQIRDIRMLQKLG 423 Query: 339 HTIE-RLALFDQFPYTRHMECGVLLVRK 365 + +E + L D FP+T +E +LVRK Sbjct: 424 YRVEGSMTLVDMFPFTNSIESVCMLVRK 451 >gi|312129534|ref|YP_003996874.1| 23S rRNA m(5)u-1939 methyltransferase [Leadbetterella byssophila DSM 17132] gi|311906080|gb|ADQ16521.1| 23S rRNA m(5)U-1939 methyltransferase [Leadbetterella byssophila DSM 17132] Length = 467 Score = 235 bits (600), Expect = 8e-60, Method: Composition-based stats. Identities = 79/397 (19%), Positives = 144/397 (36%), Gaps = 45/397 (11%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVP-----NLQIFRSEPIHYRMRAEFHIWHD-- 54 T YE QLA+K ++ + + + + +YR + EF + Sbjct: 82 GCTWQHVPYETQLAQKERQVYDQLSRIGKVTLRNTSPILGSKKTQYYRNKLEFTFSNSRW 141 Query: 55 ------------GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEP---- 98 D ++ + + I + NA+ + Sbjct: 142 FTEKEVASEAELDRDALGFHVPRRFDKVLPIHHCYLQGGPSNAVRDFFREEAKASGKPFY 201 Query: 99 ---LLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRA 155 + + + T+ + + +V + + DA + + + + Sbjct: 202 DHIVHKGFFRTLMIRTTSTGELMVLVQFAENDQDAIKSILDKFLLKFPDV-TSLSYVINT 260 Query: 156 NKTKICLDRDYVDER----LTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG 211 D + V +T L +R SF Q N+ + + V + + Sbjct: 261 KGNDTIYDLEPVYYHGLPYITEEMEGLKFRIGVKSFYQTNSEQAYELYKKVREYAQIQEN 320 Query: 212 DLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270 DL+ +LY G G + LA+ V+ VE +P+VE AR N N + N + Sbjct: 321 DLVYDLYTGTGTIANFLAKGAKHVVGVEYIEPAVEDARINSQINGITNTTFFAGDMAKVL 380 Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSL 328 ++ + R + DPPR+G+D + ++ A I+Y+SCNP + Sbjct: 381 N-----------EEFVAQNGRPDVVITDPPRAGMDKSVCEVLLKVAPRRIVYVSCNPGTQ 429 Query: 329 CRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 RDL ILS + +E +A D FP+T H+E V L+ K Sbjct: 430 ARDLEILSEKYEVEAVAPVDMFPHTFHVENIVSLILK 466 >gi|294141950|ref|YP_003557928.1| 23S rRNA (Uracil-5-)-methyltransferase RumA [Shewanella violacea DSS12] gi|293328419|dbj|BAJ03150.1| 23S rRNA (Uracil-5-)-methyltransferase RumA [Shewanella violacea DSS12] Length = 453 Score = 235 bits (600), Expect = 8e-60, Method: Composition-based stats. Identities = 82/384 (21%), Positives = 161/384 (41%), Gaps = 39/384 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRS----EPIHYRMRAEFHIWHDGDD 57 L ++Q K D L +M + + YR RA ++D Sbjct: 91 GCDLQHLSIDKQRNHKQDALVGLMAKLGQAEAETLAPALIGKEWDYRRRARLATFYDRKT 150 Query: 58 LYH--IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115 + + +K+ ++I++ + ++ L++ + + +A L ++ + + + Sbjct: 151 KHTTLGFRAKASKQVVKIEHCPVLAAPLSDLILPLSQVLNRLASKKA-LGHVELIEASNG 209 Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175 +V + + D + +LR+ A +++ LI + N++ + L D + L + Sbjct: 210 HFVVIRMTQSMAD----KDTEKLREF--ALSHKVSLIVQGNESDLTLIGDEA-KTLVIGS 262 Query: 176 RTLIY---------RQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSL 225 L Y +F Q NA IN M+ + + +L+L+CG GNFSL Sbjct: 263 NELPYYELDNGIKLSFTPGNFVQVNAEINNAMVNQAVDWLSVEPHERVLDLFCGVGNFSL 322 Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285 LA+ V+ VE V+ A+ N + ++NV + + + +E ++ Sbjct: 323 PLAKKGASVIGVEGVPEMVQQAKLNATLSQLDNVSFFH---TDLSADLSKESWLGKV--- 376 Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH-ILYISCNPDSLCRDLS-ILSTTHTIER 343 + +DP R+G ++ + + P I+Y+SC+P +L RD +L + + + Sbjct: 377 -------DKLLLDPARAGAFESLQWLKKMKPKSIVYVSCDPATLARDSEPLLKHGYKLTK 429 Query: 344 LALFDQFPYTRHMECGVLLVRKPS 367 LAL D FP T H+E L K S Sbjct: 430 LALIDMFPQTHHIEAMALFELKGS 453 >gi|315023445|gb|EFT36453.1| RNA methyltransferase [Riemerella anatipestifer RA-YM] gi|325335993|gb|ADZ12267.1| SAM-dependent methyltransferase, tRNA (uracil-5-)-methyltransferase-like protein [Riemerella anatipestifer RA-GD] Length = 469 Score = 235 bits (600), Expect = 9e-60, Method: Composition-based stats. Identities = 65/389 (16%), Positives = 131/389 (33%), Gaps = 44/389 (11%) Query: 9 QYEQQLAEKVDRLRQMMLAFQV-----PNLQIFRSEPIHYRMRAEFHI----WHDGDDLY 59 YE+QL K + + + + YR + EF W +++ Sbjct: 91 SYEKQLEFKQSEVLNNLKRIGGLTDFEALPILGSPQEYFYRNKMEFSFSNARWLTSEEIL 150 Query: 60 HIMFDQQTK-----------ERMRIDYFMPGSLLINALMIEMMATIRLEPL-------LR 101 + + + + N + + + L Sbjct: 151 NGADIDNKNALGFHIPGMWSKILDLKECFLQETPSNEIRLAVKNYADANQLEFFDVKNQE 210 Query: 102 AKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161 L + + + +V +++ + L +A K + I I Sbjct: 211 GFLRTLMLRQNSKGEWMVLFQFYKEQKEDREALFEYLLNAFPQIKTLVYAINPKPNDSIY 270 Query: 162 ---LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELY 217 ++ Y D L L ++ SF Q N + + + L +++ +LY Sbjct: 271 DLEVETYYGDGFLIEQMEDLQFKIGPKSFFQTNYQQALALYQKTLEFADLKGDEVVYDLY 330 Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277 G G + +AR +V+ +E ++ AA+ + N ++N K+ Sbjct: 331 TGTGTIAQFVARKAKQVIGIESVPEAIAAAKEHAKHNGLDNCTFYCGDMKDIFTD----- 385 Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSIL 335 + + + DPPR G+ V + A I+Y+SCN + RDL+++ Sbjct: 386 ------EFLAQHPKADVLITDPPRDGMHQKVVEQILKLAPEKIVYVSCNSATQARDLALM 439 Query: 336 STTHTIERLALFDQFPYTRHMECGVLLVR 364 + +E++ D FP T H+E LL + Sbjct: 440 KEHYRVEKILPVDMFPQTHHIENIALLKK 468 >gi|326624695|gb|EGE31040.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 437 Score = 235 bits (600), Expect = 9e-60, Method: Composition-based stats. Identities = 83/356 (23%), Positives = 138/356 (38%), Gaps = 29/356 (8%) Query: 13 QLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ-QTKERM 71 Q K L ++M + I P YR RA + D + F + + + + Sbjct: 106 QQRSKSAALARLM---KHEVNDIIAGAPWGYRRRARLSLNCPPDKPLQMGFRKAGSSDIV 162 Query: 72 RIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAW 131 ++ + + AL+ + A + R L ++ + + S ++ L + L A Sbjct: 163 NVEQCPVLAPQLAALLPRIRACLASLHGTRH-LGHVELVQAGSGTLMI-LRHTAPLSAAD 220 Query: 132 RECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPN 191 +E R H+ + L + + E L F Q N Sbjct: 221 KEKLERFS---HSEGLSLFLAPFSEILETVSG-----EAPWYDSHGLRLAFSPRDFIQVN 272 Query: 192 AGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN 250 +N M+ L D +L+L+CG GNF+L LA V+ VE VE R N Sbjct: 273 EAVNQQMVARALEWLDVRAEDRVLDLFCGMGNFTLPLATRAASVIGVEGVPALVEKGREN 332 Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310 N ++NV + +E + F + +DP R+G Sbjct: 333 AIRNGLHNVTFFHENLEE------------EVTKQPWAKNGFDKVLLDPARAGATGVMRH 380 Query: 311 MVQAYP-HILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364 +++ P I+Y+SCNP +L RD L + + + RLA+ D FP+T H+E VL R Sbjct: 381 IIKLKPIRIVYVSCNPATLARDSEALVNAGYEVTRLAMLDMFPHTGHLESMVLFER 436 >gi|83644637|ref|YP_433072.1| 23S rRNA 5-methyluridine methyltransferase [Hahella chejuensis KCTC 2396] gi|123534038|sp|Q2SL27|RUMA_HAHCH RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|83632680|gb|ABC28647.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Hahella chejuensis KCTC 2396] Length = 446 Score = 235 bits (599), Expect = 9e-60, Method: Composition-based stats. Identities = 87/364 (23%), Positives = 143/364 (39%), Gaps = 26/364 (7%) Query: 13 QLAEKVDRLRQMMLAFQVPNLQIFRSEP----IHYRMRAEFHIWH--DGDDLYHIMFDQQ 66 Q+ K L + F + YR +A + + D++ ++ Sbjct: 96 QINHKESVLLDHLRHFGDLKPEQVVPPLVGAGRGYRTKARLGVRYVAKRDEVLVGFRERY 155 Query: 67 TKERMRIDYFMPGSLLINALMIEMMATIR-LEPLLRAKLFQIDYLTSQSDQAIVTLIYHR 125 + ID + + E+ A +R L R + QI+ A+V R Sbjct: 156 SNFLTAIDECPILIESVGGRIPELKALVRSLSGYQR--IPQIEVAAGDDMCALVI----R 209 Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRT--LIYRQI 183 +D E +L I L + T L E L+ R L + Sbjct: 210 HMDPLTEEDLQKLIAFSEQTGLAIYLQPKGPDTVAKLWPKDGQELLSYQLRDYGLTMQFH 269 Query: 184 ENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 FTQ N IN ML L + G+ +L+L+CG GNF+L +AR V+ VE ++ Sbjct: 270 PMDFTQVNRDINRRMLAQALEWLQPQAGETILDLFCGLGNFTLPIARSAAHVVGVEGSED 329 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302 V N N ++NV+ A +E + L+ + + +DPPRS Sbjct: 330 MVRRGYANAELNGISNVEFHAADL-HLPLAPAKEAKHAWLR-------TYDKVLLDPPRS 381 Query: 303 GLDDATVGMVQ-AYPHILYISCNPDSLCRDLSILS-TTHTIERLALFDQFPYTRHMECGV 360 G ++ M + I+Y+SCNP +L RD IL+ + + + + D FP+T H+E Sbjct: 382 GAEELAKQMTRFGAKRIVYVSCNPATLARDAGILATQGYKLIKAGVMDMFPHTAHVESMA 441 Query: 361 LLVR 364 L + Sbjct: 442 LFEK 445 >gi|299140681|ref|ZP_07033819.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella oris C735] gi|298577647|gb|EFI49515.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella oris C735] Length = 479 Score = 235 bits (599), Expect = 9e-60, Method: Composition-based stats. Identities = 78/405 (19%), Positives = 143/405 (35%), Gaps = 64/405 (15%) Query: 9 QYEQQLAEKVDRLRQMML---AFQVPNLQIFRSE--PIHYRMRAEFHI----WHDGDDLY 59 YE+QL K ++ + +P YR + EF W+ D++ Sbjct: 91 PYEEQLKAKQQQVYDQLTRIGKIALPEFNPIMGSVKTKEYRNKLEFGCANKRWYTKDEIA 150 Query: 60 HIMFDQQTKE------------------RMRIDYFMPGSLLINALMIEMMATIRLEPL-- 99 + ++ E I+ L N + E+ + + L Sbjct: 151 AMPPREEGTEGNLNESAIGFHITGAFDKIYPIEKCWLMDDLHNQIRNEINRYAKEQDLAF 210 Query: 100 -----LRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGR 154 L + S + + ++ + +H ++ E A+ L + QI + Sbjct: 211 YDIRAQHGLLRDLMMRNSNTGEFMLLVQFHYD-EEGDEEKAMALLQHIADAFPQITSLIY 269 Query: 155 ANKTK-----------ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL 203 + K D++ E + L ++ SF Q N H+ Sbjct: 270 VDNQKGNDTFGDLELTTFKGTDFIYETM----EDLKFKVGSKSFYQTNTEQAYHLYSVAR 325 Query: 204 AATKGIQGDLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262 A +L+ +LY G G + +A +V+ +E ++E A+ N N ++N Sbjct: 326 AFAALTGKELVYDLYTGTGTIANFVAHQAKQVIGIEYVPEAIEDAKENSKVNGIDNTLFY 385 Query: 263 RMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILY 320 K D R I DPPR+G+ V ++ A ++Y Sbjct: 386 AGDMKNILTD-----------DFIHEHGRPDVIITDPPRAGMHPDVVQVILNAAPKRVVY 434 Query: 321 ISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 +SCNP + RDL ++ + + + D FP+T H+E VLL R+ Sbjct: 435 VSCNPATQARDLQLMDADYKVTAVQPVDMFPHTPHVENVVLLERR 479 >gi|89075082|ref|ZP_01161523.1| 23S rRNA (uracil-5-)-methyltransferase [Photobacterium sp. SKA34] gi|89049169|gb|EAR54734.1| 23S rRNA (uracil-5-)-methyltransferase [Photobacterium sp. SKA34] Length = 440 Score = 235 bits (599), Expect = 1e-59, Method: Composition-based stats. Identities = 81/375 (21%), Positives = 146/375 (38%), Gaps = 36/375 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQV--------PNLQIFRSEPIHYRMRAEFHIWH 53 L ++ Q+ K L ++M F + + +SE HYR A + Sbjct: 89 GCNLQHLSHQGQVIAKQQALSELMAKFAITEKDDVTQVEPIVGQSE--HYRRCARLSVRM 146 Query: 54 -DGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTS 112 + +Q+K+ + ++ + +N L+ + + + + I+ + + Sbjct: 147 LPNGKMVFGFRKKQSKDIVDVNACPVLATTLNDLLPPLRELLSNLKGRKH-VGHIELVNA 205 Query: 113 QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLT 172 + + ++ R L ++ + L +++ L E+ Sbjct: 206 DNGRVLLI----RHLQPFNDNDLAAIKAFATEHALMLFLAPSSDELDHVLG-----EQPY 256 Query: 173 VAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHF 231 + F Q N +NV M+E + Q +L+L+CG GNFSL LAR Sbjct: 257 YDIDDVRLTFSPKDFIQVNRDVNVKMVEQAINWLDIQPQDRVLDLFCGLGNFSLPLARRA 316 Query: 232 DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291 V+ VE V A N AAN + N + + E + +E + Sbjct: 317 KAVVGVEGVDEMVARATTNAAANGLGNATFYQANLDEDATKLVWAQE------------Q 364 Query: 292 FKTIFVDPPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDLS-ILSTTHTIERLALFDQ 349 F I +DP R+G +V P ++Y+SCNP +L RD +L + + RL + D Sbjct: 365 FDKILLDPARAGAAGVMQHIVNLAPSKVVYVSCNPATLARDSQMLLQQGYKLARLGMMDM 424 Query: 350 FPYTRHMECGVLLVR 364 FP+T H+E L V+ Sbjct: 425 FPHTGHLESMALFVK 439 >gi|307566456|ref|ZP_07628890.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella amnii CRIS 21A-A] gi|307344844|gb|EFN90247.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella amnii CRIS 21A-A] Length = 476 Score = 235 bits (599), Expect = 1e-59, Method: Composition-based stats. Identities = 83/403 (20%), Positives = 147/403 (36%), Gaps = 65/403 (16%) Query: 9 QYEQQLAEKVDRLRQMMLAFQ---VPNLQIFRSE--PIHYRMRAEFHI----WH------ 53 Y++QL K ++ + +P + +YR + EF W+ Sbjct: 91 PYKEQLKAKEQQVFDQLTRIGKVTLPEINPIMGSIHTENYRNKLEFGCANKRWYTTEELK 150 Query: 54 ---------DGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLL---- 100 +G +HI + I L N + + Sbjct: 151 DIPNGIGLTEGAIGFHITGAFD--KIYPIKKCWLMDNLQNDIRNSIYNYALKNKFTFYDT 208 Query: 101 ---RAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANK 157 L I S + + +V + +H +D E ++ L + QI + N Sbjct: 209 REQHGLLRSIMIRNSNTGEWMVLIQFHYD-NDNDEERSLGLMKHIANNFPQISSLLYVNN 267 Query: 158 TK----------ICL-DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAAT 206 K I +D++ E + L ++ SF Q N H+ + V Sbjct: 268 QKGNDTFNDLDLILYKGKDHIFETM----EELNFKVGPKSFYQTNTEQAYHLYD-VTRRF 322 Query: 207 KGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRM 264 + G + +LY G G + +A+ +V+ +E ++E A+ N N++ N Sbjct: 323 ANLTGKELVYDLYTGTGTIANFIAKKAKKVIGIEYVPEAIEDAKVNSKINNIENTLFYAG 382 Query: 265 SSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYIS 322 K R +E R I DPPR+G+ + ++ I+Y+S Sbjct: 383 DMKNILTD-RFVKEHGR----------PDVIITDPPRAGMHPDVINVILQARPKRIVYVS 431 Query: 323 CNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 CNP + RDLS+L+T++ I + D FP+T H+E VLL + Sbjct: 432 CNPATQARDLSLLNTSYKIIAVQPVDMFPHTPHVENVVLLEER 474 >gi|87303686|ref|ZP_01086461.1| 23S rRNA methyltransferase/RumA [Synechococcus sp. WH 5701] gi|87281791|gb|EAQ73756.1| 23S rRNA methyltransferase/RumA [Synechococcus sp. WH 5701] Length = 462 Score = 235 bits (599), Expect = 1e-59, Method: Composition-based stats. Identities = 80/379 (21%), Positives = 144/379 (37%), Gaps = 44/379 (11%) Query: 11 EQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHI-WHDGDDLYHIMFDQ 65 + QL K D ++Q + +L++ + P+ YR R + L + Sbjct: 96 QAQLVWKQDLVQQALRRIGGQSLEVEPILASATPLGYRNRTTIPLERCPDGQLRAGFYRS 155 Query: 66 QTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-----------LRAKLFQIDYLTSQS 114 T + ++ I+ L+ + + LR ++ + + + Sbjct: 156 GTHRIVNMNRCPVLDPRIDRLIAPLKRDLEQSDWPVDVDLTEGGGLRHLALRVGHHSGEV 215 Query: 115 DQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDER 170 +++ L + + W E L + +T R + Sbjct: 216 LLTLISSHSDLPDLAAMAEIWMERWPELVGVGLNIQPLPTNTLMGPRTLEIAGRPW---- 271 Query: 171 LTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLAR 229 L + L R ++F Q + ++ ++ A + G +++ YCG G FSL LA Sbjct: 272 LNDSFAGLELRIGPDTFFQVHTAQAERLVPLLIEALRPATGRRIVDAYCGIGTFSLPLAA 331 Query: 230 HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHS 289 RVL +E SVE AR N N +N + + + + A+ E Sbjct: 332 AGARVLGLEQQPSSVEQARLNAGLNGLNGLT---LEAADVALALPEALE----------- 377 Query: 290 YRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILSTTHTIE--RLA 345 + +DPPR GL + + A P + Y+SCNP +L RDL+ L+ T+ R+ Sbjct: 378 -GADGLLLDPPRKGLPERVCEAILASPPERVAYLSCNPATLARDLARLTAAGTLRLLRVQ 436 Query: 346 LFDQFPYTRHMECGVLLVR 364 D FP T+H+E +L R Sbjct: 437 PIDFFPQTQHVEALAVLER 455 >gi|251788451|ref|YP_003003172.1| 23S rRNA 5-methyluridine methyltransferase [Dickeya zeae Ech1591] gi|247537072|gb|ACT05693.1| RNA methyltransferase, TrmA family [Dickeya zeae Ech1591] Length = 444 Score = 235 bits (599), Expect = 1e-59, Method: Composition-based stats. Identities = 86/362 (23%), Positives = 141/362 (38%), Gaps = 32/362 (8%) Query: 11 EQQLAE--KVDRLRQMML---AFQVPNLQIFRSEPIHYRMRAEFHIWHDGD--DLYHIMF 63 +Q L K L+ +M VP ++ YR RA +++ L Sbjct: 96 DQSLQHRSKAAALKHLMKRETGENVPEPEVIAGAAYGYRRRARLALYYQAKTRRLQMGYR 155 Query: 64 DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIY 123 + + + I+ + AL+ + +R +R +L ++ + ++ ++ Sbjct: 156 QAGSHDLVDINACPILRPELEALLAPLRDCLRQLQAVR-RLGHVELVLAEQGPLVIL--- 211 Query: 124 HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQI 183 R LD L A+ + A+ CL D R+ L Sbjct: 212 -RHLDPLCEADRQALTAFAAAQGVALFAAPEADALS-CLYGDAPSYRIA----GLSLAFS 265 Query: 184 ENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 F Q N IN M+E LA D +L+L+CG GNF+L LA RV+ VE Sbjct: 266 PRDFIQVNDEINQRMVEQALAWLDPQPQDRVLDLFCGMGNFTLPLAERAGRVVGVEGVAA 325 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302 V+ R N N + V + +E + S F + +DP R+ Sbjct: 326 LVDKGRENATRNGLTQVTFYHHNLEE------------DVTRQPWASMGFDKVLLDPARA 373 Query: 303 GLDDATVGMVQAYP-HILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGV 360 G +V+ P ++YISCNP +L RD +L + + + RL + D FP+T H+E Sbjct: 374 GAPGVMPQIVKLAPRRVVYISCNPTTLARDSKLLMAAGYRLARLTMLDMFPHTGHLESMA 433 Query: 361 LL 362 L Sbjct: 434 LF 435 >gi|256822067|ref|YP_003146030.1| TrmA family RNA methyltransferase [Kangiella koreensis DSM 16069] gi|256795606|gb|ACV26262.1| RNA methyltransferase, TrmA family [Kangiella koreensis DSM 16069] Length = 448 Score = 235 bits (599), Expect = 1e-59, Method: Composition-based stats. Identities = 84/381 (22%), Positives = 149/381 (39%), Gaps = 38/381 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL--------QIFRSEPIHYRMRAEFHIW- 52 +L Q+A K + L + + F + + +++ + YR +A + Sbjct: 87 GCSLQHMSNSAQIAHKQNVLVEQLDHFGGHSYKTDDYELVEPLQADVLGYRRKARLGVKF 146 Query: 53 -HDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLT 111 ++++ ID + + L+ + I K Q++ Sbjct: 147 VPKKGGALVGFREKRSSFLATIDSCVVLDPRVGQLITPLKNMISELDSN-DKTAQLEVAM 205 Query: 112 SQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD----RDYV 167 A+V R L + + I L + T L RD++ Sbjct: 206 GDDQVALVV----RHLVPLTEKDQNLWIEFGKEHGLYIYLQPKGPDTVHLLYGPDTRDWL 261 Query: 168 DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLV 226 RL +++ FTQ N IN M++ + + D +L+L+CG GNF++ Sbjct: 262 SYRLEDYDVEMLFH--PMDFTQVNDSINSKMVKRAIEWLEPKADDRILDLFCGLGNFTIP 319 Query: 227 LARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNRLKDI 285 LA V+ VE ++ V+ + N N ++NV+ + +FTQ ++ FN+ Sbjct: 320 LATQVQNVVGVEGSEAMVKRGQMNAKHNGLSNVEFYATNLQDDFTQEEWAQQGFNK---- 375 Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDLSIL-STTHTIER 343 I +DPPRSG D + + P I+Y+SCNP +L RD L + + + Sbjct: 376 ---------ILIDPPRSGALDVVQNITRFNPERIVYVSCNPATLARDAGELKEKGYKLVK 426 Query: 344 LALFDQFPYTRHMECGVLLVR 364 + D FP+T H E L R Sbjct: 427 AGVMDMFPHTSHTESIALFER 447 >gi|282859473|ref|ZP_06268578.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella bivia JCVIHMP010] gi|282587701|gb|EFB92901.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella bivia JCVIHMP010] Length = 476 Score = 234 bits (598), Expect = 1e-59, Method: Composition-based stats. Identities = 77/402 (19%), Positives = 140/402 (34%), Gaps = 63/402 (15%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPNLQIFRS-----EPIHYRMRAEFHI----WH------ 53 Y +QL K ++ + L F YR + EF W+ Sbjct: 91 PYSEQLKAKQQQVFDQLTRIGKIELPEFSPIMGSVHTKAYRNKLEFGCANKRWYTAEELQ 150 Query: 54 ---------DGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLL---- 100 +G +HI + I+ L N + + L Sbjct: 151 DMPEGIGLTEGAIGFHITGAFD--KIYPIEKCWLMDNLQNEIRNSIRNYALENNLTFFDL 208 Query: 101 ---RAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRE---CAIRLRDALHARKYQIQLIGR 154 L I S + + +V + +H ++ + L D+ + + + Sbjct: 209 RQQHGLLRDIMVRNSNTGEWMVLIQFHYDVEGDEQRALGLMQHLADSFPQISSLLYVNNQ 268 Query: 155 A-----NKTKICL--DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATK 207 N + L D++ E + L ++ SF Q N H+ + V Sbjct: 269 KGNDTFNDLDLILFKGNDHIFETM----EDLRFKVGPKSFYQTNTEQAYHLYD-VARRFA 323 Query: 208 GIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265 + G+ + +LY G G + +A+ +V+ +E ++E A+ N N + N Sbjct: 324 NLTGEELVYDLYTGTGTIANFVAKRAKKVIGIEYVPEAIEDAKVNSEINKIQNTLFYAGD 383 Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISC 323 K+ + R I DPPR+G+ V ++ I+Y+SC Sbjct: 384 MKDILT-----------ESFVQEHGRPDVIITDPPRAGMHPDVVNVILGAHPKRIVYVSC 432 Query: 324 NPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 NP + RDL++L + + + D FP+T H+E VLL + Sbjct: 433 NPATQARDLALLDVDYKVVAVQPVDMFPHTPHVENVVLLEER 474 >gi|326629015|gb|EGE35358.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 437 Score = 234 bits (598), Expect = 1e-59, Method: Composition-based stats. Identities = 83/356 (23%), Positives = 138/356 (38%), Gaps = 29/356 (8%) Query: 13 QLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ-QTKERM 71 Q K L ++M + I P YR RA + D + F + + + + Sbjct: 106 QQRSKSAALARLM---KHEVNDIIAGAPWGYRRRARLSLNCPPDKPLQMGFRKAGSSDIV 162 Query: 72 RIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAW 131 ++ + + AL+ + A + R L ++ + + S ++ L + L A Sbjct: 163 NVEQCPVLAPQLAALLPRIRACLASLHGTRH-LGHVELVQAGSGTLMI-LRHTAPLSAAD 220 Query: 132 RECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPN 191 +E R H+ + L + + E L F Q N Sbjct: 221 KEKLERFS---HSEGLSLFLAPFSEILETVSG-----EAPWYDSHGLRLAFSPRDFIQVN 272 Query: 192 AGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN 250 +N M+ L D +L+L+CG GNF+L LA V+ VE VE R N Sbjct: 273 EAVNQQMVARALEWLDVRAEDRVLDLFCGMGNFTLPLATRAASVIGVEGVPALVEKGREN 332 Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310 N ++NV + +E + F + +DP R+G Sbjct: 333 AIRNGLHNVTFFHENLEE------------DVTKQPWAKNGFDKVLLDPARAGATGVMRH 380 Query: 311 MVQAYP-HILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364 +++ P I+Y+SCNP +L RD L + + + RLA+ D FP+T H+E VL R Sbjct: 381 IIKLKPIRIVYVSCNPATLARDSEALVNAGYEVTRLAMLDMFPHTGHLESMVLFER 436 >gi|323131314|gb|ADX18744.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] Length = 437 Score = 234 bits (598), Expect = 1e-59, Method: Composition-based stats. Identities = 83/356 (23%), Positives = 138/356 (38%), Gaps = 29/356 (8%) Query: 13 QLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ-QTKERM 71 Q K L ++M + I P YR RA + D + F + + + + Sbjct: 106 QQRSKSAALARLM---KHEVNDIIAGAPWGYRRRARLSLNCPPDKPLQMGFRKAGSSDIV 162 Query: 72 RIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAW 131 ++ + + AL+ + A + R L ++ + + S ++ L + L A Sbjct: 163 NVEQCPVLAPQLAALLPRIRACLASLHGTRH-LGHVELVQAGSGTLMI-LRHTAPLSAAD 220 Query: 132 RECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPN 191 +E R H+ + L + + E L F Q N Sbjct: 221 KEKLERFS---HSEGLSLFLAPFSEILETVSG-----EAPWYDSHGLRLAFSPRDFIQVN 272 Query: 192 AGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN 250 +N M+ L D +L+L+CG GNF+L LA V+ VE VE R N Sbjct: 273 EAVNQQMVARALEWLDVRAEDRVLDLFCGMGNFTLPLATRAASVIGVEGVPALVEKGREN 332 Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310 N ++NV + +E + F + +DP R+G Sbjct: 333 AIRNGLHNVTFFHENLEE------------DVTKQPWAKNGFDKVLLDPARAGATGVMRH 380 Query: 311 MVQAYP-HILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364 +++ P I+Y+SCNP +L RD L + + + RLA+ D FP+T H+E VL R Sbjct: 381 IIKLKPIRIVYVSCNPATLARDSEALVNAGYEVTRLAMLDMFPHTGHLESMVLFER 436 >gi|218281544|ref|ZP_03487973.1| hypothetical protein EUBIFOR_00538 [Eubacterium biforme DSM 3989] gi|218217333|gb|EEC90871.1| hypothetical protein EUBIFOR_00538 [Eubacterium biforme DSM 3989] Length = 457 Score = 234 bits (598), Expect = 1e-59, Method: Composition-based stats. Identities = 79/378 (20%), Positives = 147/378 (38%), Gaps = 34/378 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN----LQIFRSEPIHYRMRAEFHIWHDGDD 57 L+ +Y Q K L++ ++ + N I EP+ YR + + + Sbjct: 73 GCALMHVKYPAQCKMKEGNLKETLIKYADYNGRILPIIKNPEPLSYRNSCKLPFGEEYGE 132 Query: 58 LYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQA 117 LY M+++ T +++ S L+ ++ + + L D + Sbjct: 133 LYTGMYERDTNHFQKMERCYVHSKLLEQTRQAVL-----KIMNEHHLKMYDDKKKTGYRT 187 Query: 118 IVTLIYHRLL-------DDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYV--D 168 +V + + + E I L Q + K ++ D ++ + Sbjct: 188 LVMKEFDSKIQIIFVTGKENLSEEFIHDVTQLEGVVSIWQSVKTETKREVFGDMRFIWGE 247 Query: 169 ERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA 228 E++ + + + SF Q N +V++ V+ +E Y G G SL + Sbjct: 248 EKMHLQLEDIQLSLLPRSFFQLNTKQSVNLYN-VVKDWMPRSKTTVEAYSGIGAISLFVK 306 Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288 ++ VE + +V+ A N NH +NV + + + +E++ Sbjct: 307 DKAQEIIGVESIQDAVDNANENAMLNHADNVSFICEDAGSALAHLVQEKDV--------- 357 Query: 289 SYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILSTTHTIERLAL 346 T+ VDPPRSGLDD + ++Y+SCNP +L +DL +L + I ++ Sbjct: 358 ----DTLIVDPPRSGLDDTMKETILKSKIKTMIYVSCNPATLAKDLGVLKKEYRIVKIQP 413 Query: 347 FDQFPYTRHMECGVLLVR 364 D F T H+E LLVR Sbjct: 414 VDMFSQTPHVESVTLLVR 431 >gi|317502954|ref|ZP_07961044.1| TrmA family RNA methyltransferase [Prevotella salivae DSM 15606] gi|315665920|gb|EFV05497.1| TrmA family RNA methyltransferase [Prevotella salivae DSM 15606] Length = 479 Score = 234 bits (598), Expect = 1e-59, Method: Composition-based stats. Identities = 76/405 (18%), Positives = 148/405 (36%), Gaps = 64/405 (15%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPNLQIFRS-----EPIHYRMRAEFHI----WHDGDDLY 59 YE+QL K ++ + L F+ + YR + EF W+ +++ Sbjct: 91 PYEEQLKAKQQQVFDQLTRIGKVELPPFQPILGSVKTKEYRNKLEFGCANKRWYTKEEIA 150 Query: 60 HIMFDQQTKE------------------RMRIDYFMPGSLLINALMIEMMATIRLEPL-- 99 + ++ +E I L N + E+ + + Sbjct: 151 ALPPKEEGQEGNLSESAIGFHITGAFDKIYPIKKCWLMDDLHNEIRNEISRYAKENSISF 210 Query: 100 -----LRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGR 154 L + S + + ++ + +H ++ + A++L + QI + Sbjct: 211 YDIRAQHGLLRDLMMRNSNTGEFMLLVQFHYD-EEGDEQKAMQLLQHIADTFPQITSLIY 269 Query: 155 ANKTK-----------ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL 203 + K D++ E + L ++ SF Q N H+ Sbjct: 270 VDNQKGNDTFGDLELTTFKGTDFIYETM----EDLKFKVGPKSFYQTNTDQAYHLYCVAR 325 Query: 204 AATKGIQGDLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262 + + G+L+ +LY G G + +A +V+ +E ++E A+ N N +NN Sbjct: 326 SFAQLTGGELVYDLYTGTGTIANFVAHQAKQVIGIEYVPEAIEDAKENSHVNGINNTLFY 385 Query: 263 RMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILY 320 K+ D + I DPPR+G+ V ++ + I+Y Sbjct: 386 AGDMKDILTD-----------DFIQGHGQPDVIITDPPRAGMHADVVKVILNASPKRIVY 434 Query: 321 ISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 +SCNP + RDL ++ + + + D FP+T H+E VLL R+ Sbjct: 435 VSCNPATQARDLQLMDADYKVAAVQPVDMFPHTPHVENVVLLERR 479 >gi|198244789|ref|YP_002216931.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|197939305|gb|ACH76638.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] Length = 431 Score = 234 bits (598), Expect = 1e-59, Method: Composition-based stats. Identities = 83/356 (23%), Positives = 138/356 (38%), Gaps = 29/356 (8%) Query: 13 QLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ-QTKERM 71 Q K L ++M + I P YR RA + D + F + + + + Sbjct: 100 QQRSKSAALARLM---KHEVNDIIAGAPWGYRRRARLSLNCPPDKPLQMGFRKAGSSDIV 156 Query: 72 RIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAW 131 ++ + + AL+ + A + R L ++ + + S ++ L + L A Sbjct: 157 NVEQCPVLAPQLAALLPRIRACLASLHGTRH-LGHVELVQAGSGTLMI-LRHTAPLSAAD 214 Query: 132 RECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPN 191 +E R H+ + L + + E L F Q N Sbjct: 215 KEKLERFS---HSEGLSLFLAPFSEILETVSG-----EAPWYDSHGLRLAFSPRDFIQVN 266 Query: 192 AGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN 250 +N M+ L D +L+L+CG GNF+L LA V+ VE VE R N Sbjct: 267 EAVNQQMVARALEWLDVRAEDRVLDLFCGMGNFTLPLATRAASVIGVEGVPALVEKGREN 326 Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310 N ++NV + +E + F + +DP R+G Sbjct: 327 AIRNGLHNVTFFHENLEE------------EVTKQPWAKNGFDKVLLDPARAGATGVMRH 374 Query: 311 MVQAYP-HILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364 +++ P I+Y+SCNP +L RD L + + + RLA+ D FP+T H+E VL R Sbjct: 375 IIKLKPIRIVYVSCNPATLARDSEALVNAGYEVTRLAMLDMFPHTGHLESMVLFER 430 >gi|154249037|ref|YP_001409862.1| RNA methyltransferase [Fervidobacterium nodosum Rt17-B1] gi|154152973|gb|ABS60205.1| RNA methyltransferase, TrmA family [Fervidobacterium nodosum Rt17-B1] Length = 446 Score = 234 bits (598), Expect = 1e-59, Method: Composition-based stats. Identities = 77/386 (19%), Positives = 150/386 (38%), Gaps = 42/386 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMM---LAFQVPNLQIFRSE-PIHYRMRAEFHIWHDGDD 57 ++ Y++QL K + + + F S+ YR + E+ ++ + Sbjct: 79 GCHIMDIDYKKQLELKREVVVDQLKRIAKFDGKVSDTIESDIEFGYRNKMEYTFTYENNK 138 Query: 58 LYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-----------LRAKLFQ 106 + + + + + + ID N + E+ + + + L+ + + Sbjct: 139 VKLGLKMRNSNKVVDIDDCPISPTSFNKALQEIPEIVEISKVKIYNPKSRAGTLKHLVMR 198 Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY 166 + +Q+ VT + ++ + + I ++ +++ I L Y Sbjct: 199 YSHSNNQTMAIFVT---KTERFEEAEFIRTQILNRIPQINSIIHVMNSSDE--IVLRGPY 253 Query: 167 ----VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGI-QGDLLELYCGNG 221 L V ++ +F Q N + V M+++V ++L+LY G G Sbjct: 254 KTLYGSGVLEVEMDYEKFQIPPTAFFQNNYNVAVKMVDFVTKNLNLTGSENILDLYAGIG 313 Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281 F++ LA V+AVE + SV+A + N N++ N++ EF ++ Sbjct: 314 TFTMRLAMLSRNVVAVESSHISVKAGKANANINNLRNIRYEESDVVEFLKSYTG------ 367 Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILSTTH 339 I +DPPRSG + I YISC+ +L RD+++L + Sbjct: 368 ---------NADIIILDPPRSGAGKEVCKEILRIKPHKIAYISCDSSTLARDIALLKEDY 418 Query: 340 TIERLALFDQFPYTRHMECGVLLVRK 365 I + FD FP T H+E VL+ RK Sbjct: 419 NIIAVQPFDMFPQTYHVETVVLMERK 444 >gi|268591277|ref|ZP_06125498.1| hypothetical protein PROVRETT_07550 [Providencia rettgeri DSM 1131] gi|291313252|gb|EFE53705.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Providencia rettgeri DSM 1131] Length = 443 Score = 234 bits (598), Expect = 1e-59, Method: Composition-based stats. Identities = 84/357 (23%), Positives = 146/357 (40%), Gaps = 25/357 (7%) Query: 15 AEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQT--KERMR 72 A + L Q + + + EP YR RA + + +M +Q+ + Sbjct: 105 AHALAYLMQRETSLDISVPSVISGEPYGYRRRARLGLQYQPKSKNVVMGFRQSQSNTLVD 164 Query: 73 IDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWR 132 I S ++ L+ + I +AKL ++ + + + + ++ R L Sbjct: 165 IKNCPILSPDLDILLKPLSECINQL-SNKAKLGHVELIRADNCKIVLI----RYLTPFSL 219 Query: 133 ECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNA 192 +L D + I L G + L + VAG L + +F Q N Sbjct: 220 SDTQKLSDFENQHGVSIWLAGNDENLQ-ALSPNSPQPEYQVAGELLKFN--PLNFIQVNG 276 Query: 193 GINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251 +N M+E LA + +L+L+CG GNF+L +AR V+ VE + VE AR N Sbjct: 277 QVNQQMVEQALAWLDLNSEDRVLDLFCGMGNFTLPIARLVKSVVGVEGVENLVEQARNNA 336 Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311 N + N + + ++ + F + +DP R+G + Sbjct: 337 QLNTICNATFYNENLEA------------QIHTQPWAVHGFNKVLLDPARAGAAGVMEHL 384 Query: 312 VQAYP-HILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVLLVRKP 366 ++ P I+Y+SCNP +L RD +L + + +L + D FP T H+E L +R+P Sbjct: 385 IKLMPEKIVYVSCNPTTLARDSKVLLDGGYQLLQLRMLDMFPQTSHLESMALFIRRP 441 >gi|331085907|ref|ZP_08334990.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lachnospiraceae bacterium 9_1_43BFAA] gi|330406830|gb|EGG86335.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lachnospiraceae bacterium 9_1_43BFAA] Length = 458 Score = 234 bits (598), Expect = 1e-59, Method: Composition-based stats. Identities = 82/395 (20%), Positives = 147/395 (37%), Gaps = 51/395 (12%) Query: 2 SGTLL-IDQYEQQLAEKVDRLRQMML----AFQVPNLQIFRSE-PIHYRMRAEFHIW--- 52 G + Y+ Q+ K ++++ +M + + S YR + EF Sbjct: 81 GGCMYQTMDYQAQVKMKAEQIQSIMDAAVDGYSYTFEGVKESPKEFAYRNKMEFSFGDEY 140 Query: 53 ---------HDGDDLYHIMFDQQTKERMRIDYFMPGSLLIN---ALMIEMMATIRLEPLL 100 H Y ++ K + D S +++ + ++ L Sbjct: 141 KDGPLSLGLHKKGSTYDVLTASDCK-LVHEDMTQILSCVLDYFKERGVSYYKKMQHIGYL 199 Query: 101 RAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRL------RDALHARKYQIQLIGR 154 R L + T + +VT E + L LH + + + Sbjct: 200 RHLLLRRGDTTGEILVNLVTTTQEEHDLAPLVEKLLALPVEGKIVGILHILNDSLSDVVQ 259 Query: 155 ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG-DL 213 +++TKI +DY E++ L ++ SF QPN+ + V I + Sbjct: 260 SDETKILYGQDYFYEKIM----GLEFKITPFSFFQPNSRGAEVLYSTVREYIGDIHDMTV 315 Query: 214 LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273 +L+ G G + VLA +V+ VEI + +VEAA+ N N ++N + + + Sbjct: 316 YDLFSGTGTIAQVLAPVAKQVIGVEIIEEAVEAAKENAERNGLHNCRFIAGDVFKVL--- 372 Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRD 331 D + I +DPPR G+ + + +I+YISC SL RD Sbjct: 373 ------------DEIEEKPDVIVLDPPRDGIHPKALPKILDYGVENIVYISCKATSLARD 420 Query: 332 LSILST-THTIERLALFDQFPYTRHMECGVLLVRK 365 L ++ + + + DQF T H+E LL +K Sbjct: 421 LEMIQARGYRVVKCTAVDQFCQTVHVETVCLLKKK 455 >gi|283835447|ref|ZP_06355188.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Citrobacter youngae ATCC 29220] gi|291068628|gb|EFE06737.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Citrobacter youngae ATCC 29220] Length = 432 Score = 234 bits (598), Expect = 1e-59, Method: Composition-based stats. Identities = 86/357 (24%), Positives = 145/357 (40%), Gaps = 30/357 (8%) Query: 13 QLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHI--WHDGDDLYHIMFDQQTKER 70 Q K L ++M ++V + + P YR RA + L + + Sbjct: 100 QQRSKSAALSRLM-KYEVSD--VIADTPWGYRRRARLSLNYRPKEQKLQMGFRKSGSSDI 156 Query: 71 MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDA 130 + + + AL+ + A + LR L ++ + + S TL+ R Sbjct: 157 IDVKQCPVLVPRLEALLPHIRACLESLQGLRH-LGHVELVQAGSG----TLMILRHTAPL 211 Query: 131 WRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQP 190 + +L H++ + L ++ L+ +E L F Q Sbjct: 212 SVQDKEKLECFSHSQGLSLFLAPQSE----ILESIS-EESPWYDSNGLRLSFSPRDFIQV 266 Query: 191 NAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249 N G+N M+ L GD +L+L+CG GNF+L LAR V+ VE VE AR Sbjct: 267 NEGVNQQMVARALEWLDVQPGDRVLDLFCGMGNFTLPLARRAASVVGVEGVPALVEKARE 326 Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309 N N ++NV + +E + F + +DP R+G Sbjct: 327 NALNNGLHNVTFFHENLEE------------DVTRQPWAKNGFDKVLLDPARAGAAGVMQ 374 Query: 310 GMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 +++ P ++Y+SCNP +L RD ++L+ + I +LA+ D FP+T H+E VL R Sbjct: 375 HIIKLEPIRVVYVSCNPATLARDSDALLNAGYAIRQLAMLDMFPHTGHLESMVLFER 431 >gi|110801335|ref|YP_696793.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium perfringens ATCC 13124] gi|168208816|ref|ZP_02634441.1| 23S rRNA -methyltransferase RumA [Clostridium perfringens B str. ATCC 3626] gi|182624048|ref|ZP_02951836.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium perfringens D str. JGS1721] gi|110675982|gb|ABG84969.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium perfringens ATCC 13124] gi|170713002|gb|EDT25184.1| 23S rRNA -methyltransferase RumA [Clostridium perfringens B str. ATCC 3626] gi|177910941|gb|EDT73295.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium perfringens D str. JGS1721] Length = 451 Score = 234 bits (598), Expect = 1e-59, Method: Composition-based stats. Identities = 80/395 (20%), Positives = 150/395 (37%), Gaps = 53/395 (13%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI--FRSEP--IHYRMRAEFHIWHD--- 54 + YE+QL KV++++ + +VP + + P YR + E+ + Sbjct: 79 GCSSQTIPYEKQLELKVEQVKDLFKEAEVPTGEFLGIETSPIQWEYRNKMEYTFGDEEKG 138 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGSLL---INALMIEMMAT--------IRLEPLLRAK 103 G+ + ++ + +D + I ++ + LR Sbjct: 139 GELTLGMHMKGKSFGIVNVDKCVLVDEDFRNILDTTVKYFREKGLPFYKIMPRTGYLRYL 198 Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAI---------RLRDALHARKYQIQLIGR 154 + + ++++ +V L+ +D E +L+ +H + Sbjct: 199 VVRKSV---KTEEILVNLVTTTQIDFDLTEFTELIKGLNLKGKLKSIIHTESDALSEAVI 255 Query: 155 ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL 214 K I D++ E L L ++ SF Q N+ + V ++ Sbjct: 256 PEKVNILYGDDFITENLL----GLNFKISPFSFFQTNSLGAEKLYSIVRDFMGAADNKVV 311 Query: 215 -ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273 +LYCG G + A +V+ +E+ + + AA N N +NN + E + + Sbjct: 312 FDLYCGTGTIGQIAAGKASKVIGIELIEEAAMAANENAKLNGLNNCNFIAGDVAEVIKTV 371 Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRD 331 + + I +DPPRSG+ + V + P I+Y+SCNP +L D Sbjct: 372 K---------------DKPDIIILDPPRSGVHPKALDYVIKFNAPQIIYVSCNPKTLVTD 416 Query: 332 LSILS-TTHTIERLALFDQFPYTRHMECGVLLVRK 365 L +L + IE+ L D FP T H+E V L +K Sbjct: 417 LKVLEAKGYEIEKTLLMDMFPNTPHVETVVKLNKK 451 >gi|18311096|ref|NP_563030.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium perfringens str. 13] gi|168212849|ref|ZP_02638474.1| 23S rRNA -methyltransferase RumA [Clostridium perfringens CPE str. F4969] gi|50401771|sp|Q8XIK5|Y2114_CLOPE RecName: Full=Uncharacterized RNA methyltransferase CPE2114 gi|18145779|dbj|BAB81820.1| RNA methyltransferase-like protein [Clostridium perfringens str. 13] gi|170715477|gb|EDT27659.1| 23S rRNA -methyltransferase RumA [Clostridium perfringens CPE str. F4969] Length = 451 Score = 234 bits (598), Expect = 1e-59, Method: Composition-based stats. Identities = 80/395 (20%), Positives = 150/395 (37%), Gaps = 53/395 (13%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI--FRSEP--IHYRMRAEFHIWHD--- 54 + YE+QL KV++++ + +VP + + P YR + E+ + Sbjct: 79 GCSSQTIPYEKQLELKVEQVKDLFKEAEVPTGEFLGIETSPIQWEYRNKMEYTFGDEEKG 138 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGSLL---INALMIEMMAT--------IRLEPLLRAK 103 G+ + ++ + +D + I ++ + LR Sbjct: 139 GELTLGMHMKGKSFGIVNVDKCVLVDEDFRNILDTTVKYFREKGLPFYKIMPRTGYLRYL 198 Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAI---------RLRDALHARKYQIQLIGR 154 + + ++++ +V L+ +D E +L+ +H + Sbjct: 199 VVRKSV---KTEEILVNLVTTTQIDFDLTEFTELIKGLNLKGKLKSIIHTESDALSEAVI 255 Query: 155 ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL 214 K I D++ E L L ++ SF Q N+ + V ++ Sbjct: 256 PEKVNILYGDDFITENLL----GLNFKISPFSFFQTNSLGAEKLYSIVRDFMGAADNKVV 311 Query: 215 -ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273 +LYCG G + A +V+ +E+ + + AA N N +NN + E + + Sbjct: 312 FDLYCGTGTIGQIAAGKASKVIGIELIEEAAMAANENAKLNGLNNCNFIAGDVAEVIKTV 371 Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRD 331 + + I +DPPRSG+ + V + P I+Y+SCNP +L D Sbjct: 372 K---------------DKPDIIILDPPRSGVHPKALDYVIKFNAPQIIYVSCNPKTLVTD 416 Query: 332 LSILS-TTHTIERLALFDQFPYTRHMECGVLLVRK 365 L +L + IE+ L D FP T H+E V L +K Sbjct: 417 LKVLETKGYEIEKTLLMDMFPNTPHVETVVKLNKK 451 >gi|307825599|ref|ZP_07655817.1| RNA methyltransferase, TrmA family [Methylobacter tundripaludum SV96] gi|307733485|gb|EFO04344.1| RNA methyltransferase, TrmA family [Methylobacter tundripaludum SV96] Length = 444 Score = 234 bits (598), Expect = 1e-59, Method: Composition-based stats. Identities = 78/374 (20%), Positives = 145/374 (38%), Gaps = 28/374 (7%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL----QIFRSEPIHYRMRAEFHIWHDGDD 57 + + Q+ K D L + Q YR +A + + Sbjct: 88 GCSFQHVEASAQIRIKQDLLVDQFKRIGKTEIPELWQPLVGPHWGYRSKARMGVKYVEKK 147 Query: 58 LYHIMFDQQTKERM--RIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115 ++ ++ + I+ + ++ ++ + I ++ K+ QI+ Sbjct: 148 NRVLVGFRERRHPYLAEIESCIVMHPVVGTKLMALSEMIGGL-TIKDKIPQIEVAIGDQQ 206 Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY-VDERLTVA 174 + R+L+ R+R+ H + L + T + LD + + + Sbjct: 207 CVL----SFRVLEPPTDADKERMREFAHEHDISLCLQSKGPDTIVPLDGEPELIPTYALP 262 Query: 175 GRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDR 233 + L ++ FTQ N IN M+ VL + D +L+L+CG GNF+L +A+ Sbjct: 263 DQGLEFKFKPAMFTQVNYEINKQMINRVLETLALNENDSVLDLFCGLGNFTLPMAKFAGH 322 Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293 V+ VE +P V A+ N N + NV+ + + D + ++ Sbjct: 323 VVGVEGDQPLVNHAKENARHNGIENVEFYAADLSK------------DISDQPWANRKYN 370 Query: 294 TIFVDPPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDLSIL--STTHTIERLALFDQF 350 I +DP R+G D + P I+Y+SCNP +L RD IL + + + + D F Sbjct: 371 KIMLDPSRAGASDVLHHFKKWQPEQIVYVSCNPSTLARDAGILVNELGYKLVKAGVMDMF 430 Query: 351 PYTRHMECGVLLVR 364 P T H+E L + Sbjct: 431 PQTGHVESMALFEK 444 >gi|197247468|ref|YP_002147867.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197211171|gb|ACH48568.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Salmonella enterica subsp. enterica serovar Agona str. SL483] Length = 431 Score = 234 bits (598), Expect = 1e-59, Method: Composition-based stats. Identities = 83/356 (23%), Positives = 138/356 (38%), Gaps = 29/356 (8%) Query: 13 QLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ-QTKERM 71 Q K L ++M + I P YR RA + D + F + + + + Sbjct: 100 QQRSKSAALARLM---KHEVNDIIAGAPWGYRRRARLSLNCPSDKPLQMGFRKAGSSDIV 156 Query: 72 RIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAW 131 ++ + + AL+ + A + R L ++ + + S ++ L + L A Sbjct: 157 NVEQCPVLAPQLEALLPRIRACLASLHGTRH-LGHVELVQAGSGTLMI-LRHTAPLSAAD 214 Query: 132 RECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPN 191 +E R H+ + L + + E L F Q N Sbjct: 215 KEKLERFS---HSEGLSLFLAPFSEILETVSG-----EAPWYDSHGLRLAFSPRDFIQVN 266 Query: 192 AGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN 250 +N M+ L D +L+L+CG GNF+L LA V+ VE VE R N Sbjct: 267 EAVNQQMVARALEWLDVRAEDRVLDLFCGMGNFTLPLATRAASVIGVEGVPALVEKGREN 326 Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310 N ++NV + +E + F + +DP R+G Sbjct: 327 AIRNGLHNVTFFHENLEE------------DVTKQPWAKNGFDKVLLDPARAGATGVMRH 374 Query: 311 MVQAYP-HILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364 +++ P I+Y+SCNP +L RD L + + + RLA+ D FP+T H+E VL R Sbjct: 375 IIKLKPIRIVYVSCNPATLARDSEALVNAGYEVTRLAMLDMFPHTGHLESMVLFER 430 >gi|62181467|ref|YP_217884.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|224584748|ref|YP_002638546.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|75481161|sp|Q57KF9|RUMA_SALCH RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|62129100|gb|AAX66803.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|224469275|gb|ACN47105.1| 23S rRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|322715951|gb|EFZ07522.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 431 Score = 234 bits (598), Expect = 1e-59, Method: Composition-based stats. Identities = 84/356 (23%), Positives = 140/356 (39%), Gaps = 29/356 (8%) Query: 13 QLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ-QTKERM 71 Q K L ++M +V + I P YR RA + D + F + + + + Sbjct: 100 QQRSKSAALARLM-KHEVKD--IIAGAPWGYRRRARLSLNCPPDKPLQMGFRKAGSSDIV 156 Query: 72 RIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAW 131 ++ + + AL+ + A + R L ++ + + S ++ L + L A Sbjct: 157 NVEQCPVLAPQLAALLPRIRACLASLHGTRH-LGHVELVQAGSGTLMI-LRHTAPLSAAD 214 Query: 132 RECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPN 191 +E R H+ + L + + E L F Q N Sbjct: 215 KEKLERFS---HSEGLSLFLAPFSEILETVSG-----EAPWYDSHGLRLAFSPRDFIQVN 266 Query: 192 AGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN 250 +N M+ L D +L+L+CG GNF+L LA V+ VE VE R N Sbjct: 267 EAVNQQMVARALEWLDVRAEDRVLDLFCGMGNFTLPLATRAASVVGVEGVPALVEKGREN 326 Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310 N ++NV + +E + F + +DP R+G Sbjct: 327 AIRNGLHNVTFFHENLEE------------DVTKQPWAKNGFDKVLLDPARAGATGVMRH 374 Query: 311 MVQAYP-HILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364 +++ P I+Y+SCNP +L RD L + + + RLA+ D FP+T H+E VL R Sbjct: 375 IIKLKPIRIVYVSCNPATLARDSEALVNAGYEVTRLAMLDMFPHTGHLESMVLFER 430 >gi|261879348|ref|ZP_06005775.1| TrmA family RNA methyltransferase [Prevotella bergensis DSM 17361] gi|270333911|gb|EFA44697.1| TrmA family RNA methyltransferase [Prevotella bergensis DSM 17361] Length = 489 Score = 234 bits (597), Expect = 2e-59, Method: Composition-based stats. Identities = 78/409 (19%), Positives = 141/409 (34%), Gaps = 64/409 (15%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFHI----WHDGDDLY 59 Y +QL K ++ + + + YR + EF W ++L Sbjct: 91 PYAEQLKAKQQQVEDQLRRIGKVELPQLNPIMGSEKIYEYRNKLEFGCCSKRWFTREELD 150 Query: 60 HIMFDQQTKERMRIDYFMPG----------SLLINALMIEMMATIRLEP----------- 98 + + + I + + G L++ + E+ I Sbjct: 151 NAELNLDSGNHAAIGFHIAGAFDKIYPIRKCWLMDDVHNEIRNEIERYAKATNMTFYDVR 210 Query: 99 LLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKT 158 R L + + TS + +V + +H + E A L + R QI + + Sbjct: 211 AQRGLLRSLMFRTSNTGGWMVLVQFHYD-EPQDEEKAQALLQHIADRFPQITSLIYVDNQ 269 Query: 159 K-------ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG 211 K + L + + L ++ SF Q N H+ V Sbjct: 270 KGNDTFGDLDLITYQGTDCIYETMEDLKFKVGPKSFYQTNTDQAYHLYSVVRNMCFKGSD 329 Query: 212 D-------------LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN 258 + +LY G G + +A+ +V+ +E ++E A+ N N + N Sbjct: 330 SGDGDESGTERRPLIYDLYTGTGTIANFVAKKASQVIGIEFVPEAIEDAQVNSRINGIEN 389 Query: 259 VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYP 316 + K D I DPPR+G+ + V ++ A Sbjct: 390 TQFFAGDMKNVLTD-----------DFISEHGCPDIIITDPPRAGMHEDVVRVILNAAPA 438 Query: 317 HILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 I+Y+SCNP + RDL++L + +E + D FP+T H+E V L R+ Sbjct: 439 CIVYVSCNPATQARDLALLDQDYRVEEVQPVDMFPHTPHVENVVKLTRR 487 >gi|143582026|sp|Q0HXI0|RUMA_SHESR RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase Length = 449 Score = 234 bits (597), Expect = 2e-59, Method: Composition-based stats. Identities = 87/376 (23%), Positives = 145/376 (38%), Gaps = 34/376 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN---LQIFRSEPIHYRMRAEFHIWHDG--D 56 L Q K L +M F + E HYR RA D Sbjct: 91 GCDLQHMSLAGQREHKSAALVDIMAKFAGAEGNSVPALTGEGWHYRRRARLATLFDKNTK 150 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116 L + + + ID + + ++ L I A + + ++ L ++ + + + Sbjct: 151 QLSLGFRASSSNQVVPIDSCLVLAKPLSDL-IAPFAKLLNQLAAKSSLGHLELIDADNGH 209 Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRA------NKTKICLDRDYVDER 170 V I L D + +L + I L N T + +D++ Sbjct: 210 FAVIRITKSLND----KDMAKLAQFAEQHQIHICLQDNNGEFHGVNGTLLLPVYQLLDDK 265 Query: 171 LTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLAR 229 +L + +F Q NA IN M+ L G+ +L+L+CG GNFSL LA+ Sbjct: 266 ADATPVSLTF--TPGNFVQVNAQINKAMVAQALDWLAPQPGERILDLFCGMGNFSLPLAK 323 Query: 230 HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHS 289 V+ VE V AR N AAN ++N+ + + E ++ Sbjct: 324 LGAEVIGVEGVPEMVSQARENAAANGLSNLTFYHGD---LSADLSCEPWMGKI------- 373 Query: 290 YRFKTIFVDPPRSGLDDATVGMVQAYPH-ILYISCNPDSLCRD-LSILSTTHTIERLALF 347 + +DP R+G ++ + + P ++Y+SCNP SL RD +L + +++L L Sbjct: 374 ---DKLLLDPARAGAFESLQWLKKMKPRQVVYVSCNPASLARDSAVLLERGYKLQKLGLI 430 Query: 348 DQFPYTRHMECGVLLV 363 D FP T H+E L Sbjct: 431 DMFPQTHHIEAMALFE 446 >gi|114046682|ref|YP_737232.1| 23S rRNA 5-methyluridine methyltransferase [Shewanella sp. MR-7] gi|113888124|gb|ABI42175.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Shewanella sp. MR-7] Length = 463 Score = 234 bits (597), Expect = 2e-59, Method: Composition-based stats. Identities = 87/376 (23%), Positives = 145/376 (38%), Gaps = 34/376 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN---LQIFRSEPIHYRMRAEFHIWHDG--D 56 L Q K L +M F + E HYR RA D Sbjct: 105 GCDLQHMSLAGQREHKSAALVDIMAKFAGAEGNSVPALTGEGWHYRRRARLATLFDKNTK 164 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116 L + + + ID + + ++ L I A + + ++ L ++ + + + Sbjct: 165 QLSLGFRASSSNQVVPIDSCLVLAKPLSDL-IAPFAKLLNQLAAKSSLGHLELIDADNGH 223 Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRA------NKTKICLDRDYVDER 170 V I L D + +L + I L N T + +D++ Sbjct: 224 FAVIRITKSLND----KDMAKLAQFAEQHQIHICLQDNNGEFHGVNGTLLLPVYQLLDDK 279 Query: 171 LTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLAR 229 +L + +F Q NA IN M+ L G+ +L+L+CG GNFSL LA+ Sbjct: 280 ADATPVSLTF--TPGNFVQVNAQINKAMVAQALDWLAPQPGERILDLFCGMGNFSLPLAK 337 Query: 230 HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHS 289 V+ VE V AR N AAN ++N+ + + E ++ Sbjct: 338 LGAEVIGVEGVPEMVSQARENAAANGLSNLTFYHGD---LSADLSCEPWMGKI------- 387 Query: 290 YRFKTIFVDPPRSGLDDATVGMVQAYPH-ILYISCNPDSLCRD-LSILSTTHTIERLALF 347 + +DP R+G ++ + + P ++Y+SCNP SL RD +L + +++L L Sbjct: 388 ---DKLLLDPARAGAFESLQWLKKMKPRQVVYVSCNPASLARDSAVLLERGYKLQKLGLI 444 Query: 348 DQFPYTRHMECGVLLV 363 D FP T H+E L Sbjct: 445 DMFPQTHHIEAMALFE 460 >gi|168820323|ref|ZP_02832323.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205342808|gb|EDZ29572.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|320087382|emb|CBY97147.1| hypothetical protein SENTW_3066 [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 431 Score = 234 bits (597), Expect = 2e-59, Method: Composition-based stats. Identities = 83/356 (23%), Positives = 138/356 (38%), Gaps = 29/356 (8%) Query: 13 QLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ-QTKERM 71 Q K L ++M + I P YR RA + D + F + + + + Sbjct: 100 QQRSKSAALARLM---KHEVNDIIAGAPWGYRRRARLSLNCPPDKPLQMGFRKAGSSDIV 156 Query: 72 RIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAW 131 ++ + + AL+ + A + R L ++ + + S ++ L + L A Sbjct: 157 NVEQCPVLAPQLAALLPRIRACLASLHGTRH-LGHVELVQAGSGTLMI-LRHTAPLSAAD 214 Query: 132 RECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPN 191 +E R H+ + L + + E L F Q N Sbjct: 215 KEKLERFS---HSEGLSLFLAPFSEILETVSG-----EAPWYDSHGLRLAFSPRDFIQVN 266 Query: 192 AGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN 250 +N M+ L D +L+L+CG GNF+L LA V+ VE VE R N Sbjct: 267 EAVNQQMVARALEWLDVRAEDRVLDLFCGMGNFTLPLATRAASVVGVEGVPALVEKGREN 326 Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310 N ++NV + +E + F + +DP R+G Sbjct: 327 AIRNGLHNVTFFHENLEE------------DVTKQPWAKNGFDKVLLDPARAGATGVMRH 374 Query: 311 MVQAYP-HILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364 +++ P I+Y+SCNP +L RD L + + + RLA+ D FP+T H+E VL R Sbjct: 375 IIKLKPIRIVYVSCNPATLARDSEALVNAGYEVTRLAMLDMFPHTGHLESMVLFER 430 >gi|209695937|ref|YP_002263867.1| 23S rRNA 5-methyluridine methyltransferase [Aliivibrio salmonicida LFI1238] gi|226725377|sp|B6EKM3|RUMA_ALISL RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|208009890|emb|CAQ80203.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Aliivibrio salmonicida LFI1238] Length = 438 Score = 234 bits (597), Expect = 2e-59, Method: Composition-based stats. Identities = 91/369 (24%), Positives = 147/369 (39%), Gaps = 26/369 (7%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRS---EPIHYRMRAEFHIWHDGDDL 58 L Q+ +Q+ K D+L+++M V + YR RA + Sbjct: 90 GCNLQHLQHAEQIIAKNDKLQELMKKQGVDACDVAEPILANEHDYRRRARISLIM-NKQT 148 Query: 59 YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAI 118 + F + K+ I +L+ L + + L L+ K Q+D Sbjct: 149 NQLDFGFRKKQSKEIVNVRHCPVLVKELDQHLESLYTLLNQLKGKRHLGHVELVQADNGS 208 Query: 119 VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTL 178 V LI H + + L R + L+ ++ L+ Y +E V Sbjct: 209 VLLIRH--VAAFNEKDQQALLHYCEERDLILYLMPESD----VLNHVYGEEPYYVIDEVK 262 Query: 179 IYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAV 237 IY F Q NA IN M+ L D +L+L+CG GNFSL LA+ V+ + Sbjct: 263 IY-FTPKDFIQVNASINDSMVNQALTWLDLNADDCVLDLFCGLGNFSLPLAQKVKTVVGI 321 Query: 238 EIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFV 297 E + V+ A+ N N ++NV + + +E S +F I + Sbjct: 322 EGVEEMVKRAQSNAKRNELDNVTFYQANLEEPIDQQV------------WASTKFTKILL 369 Query: 298 DPPRSGLDDATVGMVQAYPH-ILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRH 355 DP R+G + + P ++Y+SCNP +L RD +L + + RL + D FP+T H Sbjct: 370 DPARAGAAGVMQTVAKLKPETVVYVSCNPATLARDSQLLIQRGYKLTRLGMLDMFPHTGH 429 Query: 356 MECGVLLVR 364 +E L R Sbjct: 430 LESMALFER 438 >gi|205353903|ref|YP_002227704.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205273684|emb|CAR38674.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] Length = 431 Score = 234 bits (597), Expect = 2e-59, Method: Composition-based stats. Identities = 83/356 (23%), Positives = 138/356 (38%), Gaps = 29/356 (8%) Query: 13 QLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ-QTKERM 71 Q K L ++M + I P YR RA + D + F + + + + Sbjct: 100 QQRSKSAALARLM---KHEVNDIIAGAPWGYRRRARLSLNCPPDKPLQMGFRKAGSSDIV 156 Query: 72 RIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAW 131 ++ + + AL+ + A + R L ++ + + S ++ L + L A Sbjct: 157 NVEQCPVLAPQLAALLPRIRACLASLHGTRH-LGHVELVQAGSGTLMI-LRHTAPLSAAD 214 Query: 132 RECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPN 191 +E R H+ + L + + E L F Q N Sbjct: 215 KEKLERFS---HSEGLSLFLAPFSEILETVSG-----EAPWYDSHGLRLAFSPRDFIQVN 266 Query: 192 AGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN 250 +N M+ L D +L+L+CG GNF+L LA V+ VE VE R N Sbjct: 267 EAVNQQMVARALEWLDVRAEDRVLDLFCGMGNFTLPLATRAASVIGVEGVPALVEKGREN 326 Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310 N ++NV + +E + F + +DP R+G Sbjct: 327 AIRNGLHNVTFFHENLEE------------DVTKQPWAKNGFDKVLLDPARAGATGVMRH 374 Query: 311 MVQAYP-HILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364 +++ P I+Y+SCNP +L RD L + + + RLA+ D FP+T H+E VL R Sbjct: 375 IIKLKPIRIVYVSCNPATLARDSEALVNAGYEVTRLAMLDMFPHTGHLESMVLFER 430 >gi|16766263|ref|NP_461878.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|167550177|ref|ZP_02343934.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167993449|ref|ZP_02574543.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|197265036|ref|ZP_03165110.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|207858223|ref|YP_002244874.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|20140074|sp|Q8ZME1|RUMA_SALTY RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|16421508|gb|AAL21837.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|197243291|gb|EDY25911.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|205324674|gb|EDZ12513.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205328450|gb|EDZ15214.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|206710026|emb|CAR34381.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|261248093|emb|CBG25928.1| Uracil-5--methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267995093|gb|ACY89978.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301159518|emb|CBW19037.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312913979|dbj|BAJ37953.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321225637|gb|EFX50691.1| 23S rRNA Uracil-5- -methyltransferase RumA [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|332989828|gb|AEF08811.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 431 Score = 234 bits (597), Expect = 2e-59, Method: Composition-based stats. Identities = 83/356 (23%), Positives = 138/356 (38%), Gaps = 29/356 (8%) Query: 13 QLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ-QTKERM 71 Q K L ++M + I P YR RA + D + F + + + + Sbjct: 100 QQRSKSAALARLM---KHEVNDIIAGAPWGYRRRARLSLNCPPDKPLQMGFRKAGSSDIV 156 Query: 72 RIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAW 131 ++ + + AL+ + A + R L ++ + + S ++ L + L A Sbjct: 157 NVEQCPVLAPQLAALLPRIRACLASLHGTRH-LGHVELVQAGSGTLMI-LRHTAPLSAAD 214 Query: 132 RECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPN 191 +E R H+ + L + + E L F Q N Sbjct: 215 KEKLERFS---HSEGLSLFLAPFSEILETVSG-----EAPWYDSHGLRLAFSPRDFIQVN 266 Query: 192 AGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN 250 +N M+ L D +L+L+CG GNF+L LA V+ VE VE R N Sbjct: 267 EAVNQQMVARALEWLDVRAEDRVLDLFCGMGNFTLPLATRAASVIGVEGVPALVEKGREN 326 Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310 N ++NV + +E + F + +DP R+G Sbjct: 327 AIRNGLHNVTFFHENLEE------------DVTKQPWAKNGFDKVLLDPARAGATGVMRH 374 Query: 311 MVQAYP-HILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364 +++ P I+Y+SCNP +L RD L + + + RLA+ D FP+T H+E VL R Sbjct: 375 IIKLKPIRIVYVSCNPATLARDSEALVNAGYEVTRLAMLDMFPHTGHLESMVLFER 430 >gi|34763070|ref|ZP_00144043.1| tRNA (Uracil-5-) -methyltransferase [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27887269|gb|EAA24367.1| tRNA (Uracil-5-) -methyltransferase [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 354 Score = 234 bits (597), Expect = 2e-59, Method: Composition-based stats. Identities = 70/367 (19%), Positives = 155/367 (42%), Gaps = 34/367 (9%) Query: 20 RLRQMMLAF-QVPNLQIF----RSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRID 74 + ++M + ++Q+ + +YR + + + F +++ E +D Sbjct: 1 MIEEVMKKIAGLSDIQVNDVLASEDIYNYRNKIIEPFSVYANKIITGFFKRKSHEVFEVD 60 Query: 75 YFMPGSLLINALMIEMMATIRLEPL-------LRAKLFQIDYLTSQSDQAIVTLIYHR-L 126 + S L N ++ E+ + + + L I + +++A+V LI + Sbjct: 61 ENILNSKLGNKIIKELKEILNKNKISVYDENTHKGILRNIMIRPNSNNEAMVVLIINSNK 120 Query: 127 LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR----DYVDERLTVAGRTLIYRQ 182 + + ++ +LR+ + K I + + KT + Y ++ + + + Sbjct: 121 ITENIKKILFKLRENIKEIK-SIYISLNSKKTNTVIGEKNILIYGEKSIKENINGIEFHI 179 Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAK 241 SF Q N + + ++ I +++ Y G G +++A+ +V A+EI K Sbjct: 180 SPTSFFQINVKQAKRLYDIAISFFDNIDNKYIVDAYSGTGTIGMIIAKKAKKVYAIEIVK 239 Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301 + E N + N++ + + ++ + + ++ R TI DPPR Sbjct: 240 SASEDGEKTAKENGIENIEFINGAVEK------------EIIKLINNNKRIDTIIFDPPR 287 Query: 302 SGLDDATVGMVQA--YPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMEC 358 GL+ + + V ++YISCNP + RD+ + +T+++L D FP T H+EC Sbjct: 288 KGLEASIIVTVAKLNLKEVVYISCNPSTFARDVKLFAEKGYTLKKLQAVDMFPQTSHIEC 347 Query: 359 GVLLVRK 365 L+V++ Sbjct: 348 VGLIVKE 354 >gi|227893144|ref|ZP_04010949.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus ultunensis DSM 16047] gi|227865010|gb|EEJ72431.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus ultunensis DSM 16047] Length = 460 Score = 234 bits (597), Expect = 2e-59, Method: Composition-based stats. Identities = 69/386 (17%), Positives = 141/386 (36%), Gaps = 40/386 (10%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNL-------QIFRSEPIHYRMRAEFHIWHDGDD 57 L Y++QL K + + + + + I +P HYR +A++ I + Sbjct: 91 LAHLSYDKQLEFKRNNMLESLKKYHPRGYAKYKVKKTIPAPDPWHYRNKAQYQIENVHGK 150 Query: 58 LYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLFQ 106 + +F + + + S LI L + + R P ++ + + Sbjct: 151 IKLGLFAPNSHRLIDLPKMPTQSEDTQKTEREIKVLIEKLHVPVANYRRHLPGIKTVVVR 210 Query: 107 IDYLTSQSDQAIVTLIYH-RLLDDAWRECAI--RLRDALHARKYQIQLIGRANKTKICLD 163 + ++T+ + + L +E + NKT+ L Sbjct: 211 QSEANKEIQVTLITIDHKIKNLIPLAKEIMKLDHVVSVYQNETEWQNPQVWGNKTEKLLG 270 Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGN 222 ++ + + + L +F Q N ++ L L++ Y G G Sbjct: 271 KNQIVKEILGKKFAL----SPRAFFQLNPVQTTNLYSEALKYLDLTPDQTLIDAYSGVGT 326 Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282 ++ A V+ +E +V+ A +N+ NH+ N ++ S+++ L Sbjct: 327 LGILAADRVKHVVGIETIPEAVKDAEHNVELNHIKNADYIQGSTEKV------------L 374 Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLSILSTTHT 340 ++ + VDPPR+GL + + + +YISCNP +L +DL +LS + Sbjct: 375 PELQNSGVSIDALIVDPPRTGLAKSLIKTILRVKPQTFVYISCNPSTLAQDLVLLSEAYD 434 Query: 341 IERLALFDQFPYTRHMECGVLLVRKP 366 + + D P T E L+ + Sbjct: 435 VRVIQNVDMLPQTPRCEAIAKLILRK 460 >gi|113478164|ref|YP_724225.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Trichodesmium erythraeum IMS101] gi|110169212|gb|ABG53752.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Trichodesmium erythraeum IMS101] Length = 485 Score = 234 bits (597), Expect = 2e-59, Method: Composition-based stats. Identities = 76/412 (18%), Positives = 145/412 (35%), Gaps = 76/412 (18%) Query: 10 YEQQLAEKVDRLRQMMLAFQV-----PNLQIFRSEPIHYRMRAEFHIW-HDGDDLYHIMF 63 YE QL K +++ Q + + + YR + + + + ++ + Sbjct: 92 YEYQLQAKQNQVIQALERIGGLKLPEVDPTLASVSTFGYRNKVTYPLSISNEGEVKAGYY 151 Query: 64 DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEP-----------LLRAKLFQIDYLTS 112 + + + + ++ N L+ E+ I +LR +I T Sbjct: 152 QKGSHKLINLNQCPIQDQRFNPLLKEIKQDITRRKWKIYDEHKRIGILRHLSLKIGEKTG 211 Query: 113 QSDQAIVTLIYHRLLDDA----------WRECAIRLRDALHARKYQIQLIGRANKTKICL 162 + +V + W E RL + +T Sbjct: 212 EIILTLVVNGSEENPEKLLPGITVQAQKWLEDYSRLVGVCLNYNSKATNTIFGQQTVCVA 271 Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNG 221 R YV E+ + L ++ N+F Q N ++E V+ +++ + YCG G Sbjct: 272 GRFYVREKFS----GLEFQLTPNTFFQVNTKTTEKLVEIVIQELALSNSEIIVDAYCGVG 327 Query: 222 NFSLVLARHFDRV-------------------------LAVEIAKPSVEAARYNIAANHV 256 F L LA++ +V + +E+ ++E A++N NH+ Sbjct: 328 TFCLSLAKYLQQVDINYNESLNIVTEDLSEIKLRKSMVIGLEVQGVAIEQAKFNAKINHL 387 Query: 257 NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--A 314 NV + + + + +DPPR G D + + + Sbjct: 388 TNVHFYEGKVERLLPQL---------------EVKPDIVLLDPPRKGCDRSVLETLLEIL 432 Query: 315 YPHILYISCNPDSLCRDLSILSTT--HTIERLALFDQFPYTRHMECGVLLVR 364 I+YISC P +L RDL L +T + + ++ D FP T H+EC L++ Sbjct: 433 PERIVYISCKPATLARDLKFLCSTGKYCLNKVQPVDFFPQTAHVECAAFLIK 484 >gi|56414909|ref|YP_151984.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|168261899|ref|ZP_02683872.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|197363837|ref|YP_002143474.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|81359864|sp|Q5PEJ4|RUMA_SALPA RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|56129166|gb|AAV78672.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197095314|emb|CAR60871.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|205349066|gb|EDZ35697.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] Length = 431 Score = 234 bits (597), Expect = 2e-59, Method: Composition-based stats. Identities = 83/356 (23%), Positives = 138/356 (38%), Gaps = 29/356 (8%) Query: 13 QLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ-QTKERM 71 Q K L ++M + I P YR RA + D + F + + + + Sbjct: 100 QQRSKSAALARLM---KHEVNDIIAGAPWGYRRRARLSLNCPPDKPLQMGFRKAGSSDIV 156 Query: 72 RIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAW 131 ++ + + AL+ + A + R L ++ + + S ++ L + L A Sbjct: 157 NVEQCPVLAPQLAALLPRIRACLASLHGTRH-LGHVELVQAGSGTLMI-LRHTAPLSAAD 214 Query: 132 RECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPN 191 +E R H+ + L + + E L F Q N Sbjct: 215 KEKLERFS---HSEGLSLFLAPFSEILETVSG-----EAPWYDSHGLRLAFSPRDFIQVN 266 Query: 192 AGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN 250 +N M+ L D +L+L+CG GNF+L LA V+ VE VE R N Sbjct: 267 EAVNQQMVARALEWLDVRAEDRVLDLFCGMGNFTLPLATRAASVVGVEGVPALVEKGREN 326 Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310 N ++NV + +E + F + +DP R+G Sbjct: 327 AIRNGLHNVTFFHENLEE------------DVTKQPWAKNGFDKVLLDPARAGATGVMRH 374 Query: 311 MVQAYP-HILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364 +++ P I+Y+SCNP +L RD L + + + RLA+ D FP+T H+E VL R Sbjct: 375 IIKLKPIRIVYVSCNPATLARDSEALVNAGYEVTRLAMLDMFPHTGHLESMVLFER 430 >gi|309805272|ref|ZP_07699324.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners LactinV 09V1-c] gi|308165506|gb|EFO67737.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners LactinV 09V1-c] Length = 361 Score = 234 bits (597), Expect = 2e-59, Method: Composition-based stats. Identities = 70/375 (18%), Positives = 145/375 (38%), Gaps = 40/375 (10%) Query: 16 EKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTK 68 K + ++ +L F N Q I + +YR +A++ I + + M+ +++ Sbjct: 3 FKKELIKDSLLKFHPRNYQKIKIKNTIPAPKQWYYRNKAQYQIESIKNKISLGMYAPKSQ 62 Query: 69 ERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQA 117 + + + S LI + I + + + ++ + + + T + Sbjct: 63 KIIDLPIMPTQSKNTQKIEFAIKKLIEKMHIAIADSRYKKDGIKTVVVRQSHATDEIQVT 122 Query: 118 IVTLIYHRLLDDAWRECAIRLRDAL---HARKYQIQLIGRANKTKICLDRDYVDERLTVA 174 +VT+ + D E I L + + + NKT + ++Y+ E++ Sbjct: 123 LVTIGKNIKNLDKLAEKIIELENVVSVFQNESQWNNPLVWGNKTTKLIGKNYITEQILNK 182 Query: 175 GRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFSLVLARHFDR 233 + +F Q N + L + +L + Y G G ++ + + Sbjct: 183 ----KFILSPRAFFQLNPEQTEVLYSTALNYLELNANSILVDAYAGVGTLGILASEKVKQ 238 Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293 V+ +E ++ A++N N+V N + + S ++ M+++ Sbjct: 239 VIGIESIPEAIADAQFNCRLNNVKNAEYINGSVEKILPQMQKD------------GIAID 286 Query: 294 TIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLSILSTTHTIERLALFDQFP 351 + VDPPR+GL+ V + +YISCNP +L RDL +LS + + + D P Sbjct: 287 ALIVDPPRTGLNKQLVKTLLTCKPKDFVYISCNPSTLARDLVLLSQAYDVRLIQPVDMMP 346 Query: 352 YTRHMECGVLLVRKP 366 T E LV + Sbjct: 347 QTPRWEGIAKLVLRK 361 >gi|218132418|ref|ZP_03461222.1| hypothetical protein BACPEC_00277 [Bacteroides pectinophilus ATCC 43243] gi|217992756|gb|EEC58758.1| hypothetical protein BACPEC_00277 [Bacteroides pectinophilus ATCC 43243] Length = 547 Score = 234 bits (597), Expect = 2e-59, Method: Composition-based stats. Identities = 79/391 (20%), Positives = 145/391 (37%), Gaps = 47/391 (12%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWHD-GD 56 Y +QL K ++++++ + + + YR + E+ + D Sbjct: 82 GCIFQTMDYNEQLKMKASQVKKLLDDVIRTDYEFEGIKASPDVTGYRNKMEYTFGDEFKD 141 Query: 57 DLYHIMFDQQTK--ERMRIDYFMPGSL----LINALMIEM-------MATIRLEPLLRAK 103 + +++ + + D + ++N + M + + LR Sbjct: 142 GPLALGLHKRSSMYDIVTCDGCLLVDEDYDRILNCVHEHMSRAGLPFFHKVTHKGYLRHL 201 Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRL------RDALHARKYQIQLIGRANK 157 L + T ++T DA + L LH + + + Sbjct: 202 LVRKAVKTGDILIDLITTTQMEYSLDALADELKALDLKGHITGFLHTYNDSVADAIKNER 261 Query: 158 TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLEL 216 T+I +D+ E L L +R SF Q N+ + + + +L Sbjct: 262 TEIVFGQDFFYEELL----GLTFRITPFSFFQTNSLGAEVLYSTAREYIGTTKDKTVFDL 317 Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276 Y G G + ++A +V+ VEI + +V AAR N A N + + + Sbjct: 318 YSGTGTIAQLMAPVAKKVIGVEIVEEAVVAARENAAHNGLTQCEFIAGDV---------- 367 Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSI 334 LK ID + I +DPPR G+ + + +Y HI+YISC SL RDL Sbjct: 368 -----LKVIDDIKDKPDIIILDPPRDGIHPKALPKILSYGVDHIVYISCKASSLARDLVT 422 Query: 335 LST-THTIERLALFDQFPYTRHMECGVLLVR 364 + +++E+ D FP T ++E VLL + Sbjct: 423 IQDMGYSVEKACCVDMFPMTGNVETVVLLSK 453 >gi|194445322|ref|YP_002042208.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194403985|gb|ACF64207.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Salmonella enterica subsp. enterica serovar Newport str. SL254] Length = 431 Score = 234 bits (597), Expect = 2e-59, Method: Composition-based stats. Identities = 83/356 (23%), Positives = 138/356 (38%), Gaps = 29/356 (8%) Query: 13 QLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ-QTKERM 71 Q K L ++M + I P YR RA + D + F + + + + Sbjct: 100 QQRSKSAALARLM---KHEVNDIIAGAPWGYRRRARLSLNCPPDKPLQMGFRKAGSSDIV 156 Query: 72 RIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAW 131 ++ + + AL+ + A + R L ++ + + S ++ L + L A Sbjct: 157 NVEQCPVLAPQLAALLPRIRACLASLHGTRH-LGHVELVQAGSGTLMI-LRHTAPLSAAD 214 Query: 132 RECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPN 191 +E R H+ + L + + E L F Q N Sbjct: 215 KEKLERFS---HSEGLSLFLAPFSEILETVSG-----EAPWYDSHGLRLAFSPRDFIQVN 266 Query: 192 AGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN 250 +N M+ L D +L+L+CG GNF+L LA V+ VE VE R N Sbjct: 267 EAVNQQMVARALEWLDVRAEDRVLDLFCGMGNFTLPLATRAASVVGVEGVPALVEKGREN 326 Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310 N ++NV + +E + F + +DP R+G Sbjct: 327 AIRNGLHNVTFFHENLEE------------DVTKQPWAKNGFDKVLLDPARAGATGVMRH 374 Query: 311 MVQAYP-HILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364 +++ P I+Y+SCNP +L RD L + + + RLA+ D FP+T H+E VL R Sbjct: 375 IIKLKPIRIVYVSCNPATLARDSEALVNAGYEVTRLAMLDMFPHTGHLESMVLFER 430 >gi|168231048|ref|ZP_02656106.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|194471802|ref|ZP_03077786.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194458166|gb|EDX47005.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|205334540|gb|EDZ21304.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] Length = 431 Score = 234 bits (597), Expect = 2e-59, Method: Composition-based stats. Identities = 83/356 (23%), Positives = 138/356 (38%), Gaps = 29/356 (8%) Query: 13 QLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ-QTKERM 71 Q K L ++M + I P YR RA + D + F + + + + Sbjct: 100 QQRSKSAALARLM---KHEVNDIIAGAPWGYRRRARLSLNCPPDKPLQMGFRKAGSSDIV 156 Query: 72 RIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAW 131 ++ + + AL+ + A + R L ++ + + S ++ L + L A Sbjct: 157 NVEQCPVLAPQLAALLPRIRACLASLHGTRH-LGHVELVQAGSGTLMI-LRHTAPLSAAD 214 Query: 132 RECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPN 191 +E R H+ + L + + E L F Q N Sbjct: 215 KEKLERFS---HSEGLSLFLAPFSEILETVSG-----EAPWYDSHGLRLAFSPRDFIQVN 266 Query: 192 AGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN 250 +N M+ L D +L+L+CG GNF+L LA V+ VE VE R N Sbjct: 267 EAVNQQMVARALEWLDVRAEDRVLDLFCGMGNFTLPLATRAASVVGVEGVPALVEKGREN 326 Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310 N ++NV + +E + F + +DP R+G Sbjct: 327 AIRNGLHNVTFFHENLEE------------DVTKQPWAKNGFDKVLLDPARAGATGVMRH 374 Query: 311 MVQAYP-HILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364 +++ P I+Y+SCNP +L RD L + + + RLA+ D FP+T H+E VL R Sbjct: 375 IIKLKPIRIVYVSCNPATLARDSEALINAGYEVTRLAMLDMFPHTGHLESMVLFER 430 >gi|168242718|ref|ZP_02667650.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|194447436|ref|YP_002046926.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|238909737|ref|ZP_04653574.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|194405740|gb|ACF65959.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|205338177|gb|EDZ24941.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] Length = 431 Score = 234 bits (596), Expect = 2e-59, Method: Composition-based stats. Identities = 83/356 (23%), Positives = 138/356 (38%), Gaps = 29/356 (8%) Query: 13 QLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ-QTKERM 71 Q K L ++M + I P YR RA + D + F + + + + Sbjct: 100 QQRSKSAALARLM---KHEVNDIIAGAPWGYRRRARLSLNCPPDKPLQMGFRKAGSSDIV 156 Query: 72 RIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAW 131 ++ + + AL+ + A + R L ++ + + S ++ L + L A Sbjct: 157 NVEQCPVLAPQLEALLPRIRACLASLHGTRH-LGHVELVQAGSGTLMI-LRHTAPLSAAD 214 Query: 132 RECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPN 191 +E R H+ + L + + E L F Q N Sbjct: 215 KEKLERFS---HSEGLSLFLAPFSEILETVSG-----EAPWYDSHGLRLAFSPRDFIQVN 266 Query: 192 AGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN 250 +N M+ L D +L+L+CG GNF+L LA V+ VE VE R N Sbjct: 267 EAVNQQMVARALEWLDVRAEDRVLDLFCGMGNFTLPLATRAASVIGVEGVPALVEKGREN 326 Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310 N ++NV + +E + F + +DP R+G Sbjct: 327 AIRNGLHNVTFFHENLEE------------DVTKQPWAKNGFDKVLLDPARAGATGVMRH 374 Query: 311 MVQAYP-HILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364 +++ P I+Y+SCNP +L RD L + + + RLA+ D FP+T H+E VL R Sbjct: 375 IIKLKPIRIVYVSCNPATLARDSEALVNAGYEVTRLAMLDMFPHTGHLESMVLFER 430 >gi|242278181|ref|YP_002990310.1| RNA methyltransferase, TrmA family [Desulfovibrio salexigens DSM 2638] gi|242121075|gb|ACS78771.1| RNA methyltransferase, TrmA family [Desulfovibrio salexigens DSM 2638] Length = 465 Score = 234 bits (596), Expect = 2e-59, Method: Composition-based stats. Identities = 80/392 (20%), Positives = 155/392 (39%), Gaps = 42/392 (10%) Query: 2 SGTLLID-QYEQQLAEKVDRLRQMMLAFQVPNL-------QIFRSE-PIHYRMRAEFHIW 52 G L D +Y Q K ++ + + + S YR + EF Sbjct: 85 GGCLHQDIKYPAQTFWKGRQVCETLERIGKIGPDTPGMGEEALPSPLEYGYRNKMEFSFH 144 Query: 53 HDGDDLYHIMFDQQTKERMR----IDYFMPGSLLINALMIEMMATIRLEPLL-------R 101 GD L + ++ + I AL+ + A + R Sbjct: 145 GIGDSLKLGFKRRGSETDVLNISSCPLLPEQCADIPALVRDYCAHTNIGAYRHNRGGYWR 204 Query: 102 AKLFQIDYLTSQSDQAIVT---LIYH--RLLDDAWRECAIRLRDALHARKYQIQLIGRAN 156 + + + + + ++T +H + L + +L+ +H+ + + Sbjct: 205 KLVVRFSHHSGEMMIHLLTGPARSHHTIKGLGKLLFDNIPQLKSFVHSTRKGRADLATGE 264 Query: 157 KTKICLDRDYVDERLTVAG-RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-L 214 + ++++ E LT A + YR N+F Q N+ + D+ Sbjct: 265 RLISVTGQEHITETLTHADGSEVSYRITPNAFFQTNSKGAEVLYRKSSELAAPKADDVVW 324 Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274 +L+CG+G + +A+ +++ +E+++ SV++A+ N A N + N + + + Sbjct: 325 DLFCGSGGIGMFMAKDVGKMIGIEVSEESVQSAKDNAALNGLENTQYIVGN--------- 375 Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGL-DDATVGMVQAYP-HILYISCNPDSLCRDL 332 K + + VDPPRSG+ D + +++ P ILYISCNP +L RD Sbjct: 376 ----LASEKGLPEDLPHPDMVIVDPPRSGVPDPSLQKLIELGPEKILYISCNPSTLARDA 431 Query: 333 SILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 + + + +ER A D FP+T H+E LL + Sbjct: 432 AKMEGRYKLERFAAVDMFPHTAHVESIALLTK 463 >gi|157148321|ref|YP_001455640.1| 23S rRNA 5-methyluridine methyltransferase [Citrobacter koseri ATCC BAA-895] gi|226725378|sp|A8ANZ1|RUMA_CITK8 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|157085526|gb|ABV15204.1| hypothetical protein CKO_04138 [Citrobacter koseri ATCC BAA-895] Length = 432 Score = 234 bits (596), Expect = 2e-59, Method: Composition-based stats. Identities = 84/357 (23%), Positives = 137/357 (38%), Gaps = 30/357 (8%) Query: 13 QLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWH--DGDDLYHIMFDQQTKER 70 Q K L ++M + ++ P YR RA + + L + + Sbjct: 100 QQRSKSAALSRLM---KCDVAEVIADTPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDI 156 Query: 71 MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDA 130 + + + AL+ + A + R F L + ++ L + L+ Sbjct: 157 VDVRQCPILVPQLEALLPRVRACLESLQGNRH--FGHVELVQAGNGTLMVLRHTAPLNAT 214 Query: 131 WRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQP 190 RE R H+ + L +++ + E L F Q Sbjct: 215 DREKLERFS---HSEGLSLFLAPQSDILEPLTG-----EAPWYDSNGLRLTFSPRDFIQV 266 Query: 191 NAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249 N G+N M+ L D +L+L+CG GNF+L LA V+ VE VE R Sbjct: 267 NEGVNQKMVARALEWLDIQPDDRVLDLFCGMGNFTLPLATRAASVVGVEGVPALVEKGRE 326 Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309 N N + NV + +E + F I +DP R+G Sbjct: 327 NARRNGLQNVTFFHENLEE------------DVTKQQWAKNGFDKILLDPARAGAAGVMK 374 Query: 310 GMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 +++ P I+Y+SCNP +L RD ++L+ + I+RLA+ D FP+T H+E VL R Sbjct: 375 HIIKLKPIRIVYVSCNPATLARDSDALLNAGYQIQRLAMLDMFPHTGHLESMVLFER 431 >gi|309803238|ref|ZP_07697335.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners LactinV 11V1-d] gi|308164746|gb|EFO66996.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners LactinV 11V1-d] Length = 361 Score = 234 bits (596), Expect = 2e-59, Method: Composition-based stats. Identities = 70/375 (18%), Positives = 145/375 (38%), Gaps = 40/375 (10%) Query: 16 EKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTK 68 K + ++ +L F N Q I + +YR +A++ I + + M+ +++ Sbjct: 3 FKKELIKDSLLKFHPRNYQKIKIKNTIPAPKQWYYRNKAQYQIESIKNKISLGMYAPKSQ 62 Query: 69 ERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQA 117 + + + S LI + I + + + ++ + + + T + Sbjct: 63 KIIDLPIMPTQSKNTQKVEFAIKKLIEKMHIAIADSRYKKDGIKTVVVRQSHATDEIQVT 122 Query: 118 IVTLIYHRLLDDAWRECAIRLRDAL---HARKYQIQLIGRANKTKICLDRDYVDERLTVA 174 +VT+ + D E I L + + + NKT + ++Y+ E++ Sbjct: 123 LVTIGKNIKNLDKLAEKIIELENVVSVFQNESQWNNPLVWGNKTTKLIGKNYITEQILNK 182 Query: 175 GRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFSLVLARHFDR 233 + +F Q N + L + +L + Y G G ++ + + Sbjct: 183 ----KFILSPRAFFQLNPEQTEVLYSTALNYLELNANSILVDAYAGVGTLGILASEKVKQ 238 Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293 V+ +E ++ A++N N+V N + + S ++ M+++ Sbjct: 239 VIGIESIPEAIADAQFNCRLNNVKNAEYINGSVEKILPQMQKD------------GIAID 286 Query: 294 TIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLSILSTTHTIERLALFDQFP 351 + VDPPR+GL+ V + +YISCNP +L RDL +LS + + + D P Sbjct: 287 ALIVDPPRTGLNKQLVKTLLTCKPKDFVYISCNPSTLARDLVLLSQAYDVRLIQPVDMMP 346 Query: 352 YTRHMECGVLLVRKP 366 T E LV + Sbjct: 347 QTPRWEGIAKLVLRK 361 >gi|86143081|ref|ZP_01061503.1| putative RNA methyltransferase [Leeuwenhoekiella blandensis MED217] gi|85830526|gb|EAQ48985.1| putative RNA methyltransferase [Leeuwenhoekiella blandensis MED217] Length = 457 Score = 234 bits (596), Expect = 2e-59, Method: Composition-based stats. Identities = 76/403 (18%), Positives = 136/403 (33%), Gaps = 56/403 (13%) Query: 2 SGTLLIDQYEQQLAEKVDRLR---QMMLAFQVPNLQIFRSEP--IHYRMRAEFHIW---- 52 Y+ QL K + Q + +P++ YR + EF Sbjct: 72 GCKWQNMHYDYQLEYKQREVVNNLQRLGKIDLPDITPISGSKDIYFYRNKMEFSFSDSKW 131 Query: 53 -----------HDGDDLYHIMFDQQTKERMRIDYFMPGSLLINAL-----------MIEM 90 + + + + ID NA+ I Sbjct: 132 LTLKQIQSDEIIEDRNALGFHIPGMWDKILDIDKCHLQRDPSNAIRNGVKEFATKNNIPF 191 Query: 91 MATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQ 150 E LLR + + TS + + +V + + + + L++ + Sbjct: 192 FNARNQEGLLRTLMIR----TSSTGELMVLVQFFEDAEAQRKLVLEYLKETFPEITSLLY 247 Query: 151 LIGRANKTKICLDRDYV----DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAAT 206 +I D+D + + + L ++ SF Q N+ L + Sbjct: 248 VIN-EKGNDTIYDQDIICYAGRDHIFEEMEGLKFKINAKSFYQTNSEQAYE-LYKITRDF 305 Query: 207 KGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRM 264 ++GD + +LY G G + +A+ +V+ VE ++ AA+ N N + NV+ Sbjct: 306 AELKGDETVFDLYTGTGTIAQFVAKKAKKVIGVEAVPDAIIAAKENAQLNEIENVEFYVG 365 Query: 265 SSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYIS 322 K + + DPPR G+ V + I+Y+S Sbjct: 366 DMKNVFND-----------AFIAQHGQPDVVITDPPRDGMHKDVVAQLIKIKADRIVYVS 414 Query: 323 CNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 CN + RDL++L + +ER+ D FP T H+E VLL K Sbjct: 415 CNSATQARDLALLDPYYKVERVQPVDMFPQTHHVENVVLLKLK 457 >gi|288933811|ref|YP_003437870.1| RNA methyltransferase, TrmA family [Klebsiella variicola At-22] gi|288888540|gb|ADC56858.1| RNA methyltransferase, TrmA family [Klebsiella variicola At-22] Length = 434 Score = 234 bits (596), Expect = 2e-59, Method: Composition-based stats. Identities = 82/358 (22%), Positives = 138/358 (38%), Gaps = 30/358 (8%) Query: 13 QLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQT--KER 70 Q K L ++M ++ P YR RA + + M +Q K Sbjct: 100 QQQSKRAALARLMKR---EVDEVIAGMPWGYRRRARLSLNYQPKTQQLQMGFRQANAKAI 156 Query: 71 MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDA 130 + + + + AL+ + + LR L ++ + + + +V + H A Sbjct: 157 VDVVQCPVLAPQLEALLPAVRECLSALSALRH-LGHVELVQADNGPLMV--LRHTAALPA 213 Query: 131 WRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQP 190 +L + L ++ + E L F Q Sbjct: 214 G--DREKLERFSQTHGLSLYLAPQSEILEHIHG-----EAPWYTSDGLRLVFSPRDFIQV 266 Query: 191 NAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249 N G+N M+ L D +L+L+CG GNF+L LA +V+ VE VE R Sbjct: 267 NDGVNQQMVRTALEWLDLQPEDRVLDLFCGMGNFTLPLATRAAQVVGVEGVPALVEKGRE 326 Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309 N A N ++NV + +E + F + +DP R+G Sbjct: 327 NAALNGLSNVTFFHENLEEDVTRQA------------WAKHGFDKVLLDPARAGAPGVMP 374 Query: 310 GMVQAYP-HILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 +++ P ++Y+SCNP +L RD +L + I+RLA+ D FP+T H+E VL R+ Sbjct: 375 HIIKLAPRRVVYVSCNPATLARDSETLLQAGYQIQRLAMLDMFPHTGHLESMVLFERR 432 >gi|323491189|ref|ZP_08096375.1| 23S rRNA m(5)U1939 methyltransferase [Vibrio brasiliensis LMG 20546] gi|323314557|gb|EGA67635.1| 23S rRNA m(5)U1939 methyltransferase [Vibrio brasiliensis LMG 20546] Length = 439 Score = 234 bits (596), Expect = 2e-59, Method: Composition-based stats. Identities = 81/371 (21%), Positives = 150/371 (40%), Gaps = 30/371 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRS---EPIHYRMRAEFHIWHDGDDL 58 + + Q K L Q+M F ++++ + YR RA I + Sbjct: 90 GCNMQHLSSDAQQEYKQQTLSQLMSKFAGQSIELDSPIIGDDKGYRRRARVSIKLNKKTR 149 Query: 59 Y--HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116 + +KE + + + ++AL+ + ++ + L ++ + + + Sbjct: 150 QLEFGFRKKNSKEIVNVTHCPVLDAELDALLKPLYQLLQQF-SNQENLGHVELVKGDNTK 208 Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGR 176 IV R L + L + + L+ +++ + AG Sbjct: 209 VIVL----RHLKALKPQDQQALESFAQQHQATLYLMPESDQLNRVVGESA---HYLEAGA 261 Query: 177 TLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVL 235 T+ + N+F Q N +N M+E L+ + + D +L+L+CG GNFSL +A+ V Sbjct: 262 TIPFE--PNNFIQVNQKVNQAMVEQALSWLQLTKQDRVLDLFCGLGNFSLPIAKQVTSVT 319 Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295 VE VE A YN N + N + + +E + +F I Sbjct: 320 GVEGVDAMVEKATYNAKVNQIENASFYQANLEEDVSGQL------------WAAEKFDKI 367 Query: 296 FVDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYT 353 +DP R+G + ++Y+SCNP +L RD S+LS + +++L + D FP+T Sbjct: 368 LLDPARAGASGIIEQISALGASRVVYVSCNPATLARDSQSLLSQGYKLQKLGMLDMFPHT 427 Query: 354 RHMECGVLLVR 364 H+E L V+ Sbjct: 428 SHLESMALFVK 438 >gi|262038379|ref|ZP_06011756.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Leptotrichia goodfellowii F0264] gi|261747597|gb|EEY35059.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Leptotrichia goodfellowii F0264] Length = 466 Score = 234 bits (596), Expect = 2e-59, Method: Composition-based stats. Identities = 65/395 (16%), Positives = 154/395 (38%), Gaps = 46/395 (11%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54 + +YE+QL K + L++++ N++ I +YR + ++ Sbjct: 87 GCDFGMLKYEKQLEYKNEMLKEVLEKIGEINIENIELESIIGSDIKTNYRNKTAEPVFKK 146 Query: 55 GDDLYHIMFDQQTKERMRIDYFM----PGSLLINALMIEMMA--------TIRLEPLLRA 102 + + +++ + + +IN + E+ + + E Sbjct: 147 DGKIMTGFYSKKSHDTFSASESLLKSKIAEDIINKFLKEINSFSGTKNEFKVYNEITNTG 206 Query: 103 KLFQIDYLTSQSDQAIVTLIYHRL--------LDDAWRECAIRLRDALHARKYQIQLIGR 154 L + ++ ++ ++ + + + + E L+ + K + + Sbjct: 207 FLKHVIVRNNEKNEVMLIITVSKKSQYKQLVKVLEKLYEENESLKSVYISVKKEANNVIL 266 Query: 155 ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDL 213 +T+ L +Y L + ++ +SF Q N + + + + + + + Sbjct: 267 GEETRHLLGNEY----LEEEIEEIRFKIYPDSFFQINKSQAIKLYDKAIEFLGESVHKTV 322 Query: 214 LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273 ++ + G G ++ L+ + + +E + SV AA N++ NV+ ++ + + Sbjct: 323 IDAFSGTGTIAMALSSKVKKAIGIESVESSVIAANQTAEENNIKNVEFIKGKVERVLPDV 382 Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG--MVQAYPHILYISCNPDSLCRD 331 ++ + I DPPR G+D+ + + P I+YISCNP + RD Sbjct: 383 LKK-----------EGNSVEAIIFDPPRRGIDEKALKSSVKNKIPKIVYISCNPSTFARD 431 Query: 332 LSIL-STTHTIERLALFDQFPYTRHMECGVLLVRK 365 +L +T+++++ D FP H+E LL RK Sbjct: 432 CKLLMENGYTLKKVSAVDMFPQVNHIEIVGLLERK 466 >gi|168463892|ref|ZP_02697809.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|195633311|gb|EDX51725.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Salmonella enterica subsp. enterica serovar Newport str. SL317] Length = 431 Score = 234 bits (596), Expect = 2e-59, Method: Composition-based stats. Identities = 83/356 (23%), Positives = 138/356 (38%), Gaps = 29/356 (8%) Query: 13 QLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ-QTKERM 71 Q K L ++M + I P YR RA + D + F + + + + Sbjct: 100 QQRSKSAALARLM---KHEVNDIIAGAPWGYRRRARLSLNCPPDKPLQMGFRKAGSSDIV 156 Query: 72 RIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAW 131 ++ + + AL+ + A + R L ++ + + S ++ L + L A Sbjct: 157 NVEQCPVLAPQLEALLPRIRACLASLHGTRH-LGHVELVQAGSGTLMI-LRHTAPLSAAD 214 Query: 132 RECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPN 191 +E R H+ + L + + E L F Q N Sbjct: 215 KEKLERFS---HSEGLSLFLAPFSEILETVSG-----EAPWYDSHGLRLAFSPRDFIQVN 266 Query: 192 AGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN 250 +N M+ L D +L+L+CG GNF+L LA V+ VE VE R N Sbjct: 267 EAVNQQMVARALEWLDVRAEDRVLDLFCGMGNFTLPLATRAASVVGVEGVPALVEKGREN 326 Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310 N ++NV + +E + F + +DP R+G Sbjct: 327 AIRNGLHNVTFFHENLEE------------DVTKQPWAKNGFDKVLLDPARAGATGVMRH 374 Query: 311 MVQAYP-HILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364 +++ P I+Y+SCNP +L RD L + + + RLA+ D FP+T H+E VL R Sbjct: 375 IIKLKPIRIVYVSCNPATLARDSEALVNAGYEVTRLAMLDMFPHTGHLESMVLFER 430 >gi|322614234|gb|EFY11166.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322620952|gb|EFY17810.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322624015|gb|EFY20849.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322628246|gb|EFY25035.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322633365|gb|EFY30107.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322636058|gb|EFY32766.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322639394|gb|EFY36082.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322643744|gb|EFY40295.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322648856|gb|EFY45303.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322655151|gb|EFY51461.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322658018|gb|EFY54286.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322664119|gb|EFY60318.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322667088|gb|EFY63260.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322673136|gb|EFY69243.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322677873|gb|EFY73936.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322681047|gb|EFY77080.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322685644|gb|EFY81638.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323194783|gb|EFZ79970.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323196534|gb|EFZ81682.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323205053|gb|EFZ90036.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323207746|gb|EFZ92692.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323212702|gb|EFZ97519.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323214815|gb|EFZ99563.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323222544|gb|EGA06909.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323226424|gb|EGA10632.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323230697|gb|EGA14815.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323234952|gb|EGA19038.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323238991|gb|EGA23041.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323244651|gb|EGA28657.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323247267|gb|EGA31233.1| 23S rRNA m(5)U1939 methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323251799|gb|EGA35664.1| 23S rRNA m(5)U1939 methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323257486|gb|EGA41176.1| 23S rRNA m(5)U1939 methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323263271|gb|EGA46808.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323267523|gb|EGA51007.1| 23S rRNA m(5)U1939 methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323272712|gb|EGA56118.1| 23S rRNA m(5)U1939 methyltransferase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 431 Score = 234 bits (596), Expect = 2e-59, Method: Composition-based stats. Identities = 83/356 (23%), Positives = 138/356 (38%), Gaps = 29/356 (8%) Query: 13 QLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ-QTKERM 71 Q K L ++M + I P YR RA + D + F + + + + Sbjct: 100 QQRSKSAALARLM---KHEVNDIIAGAPWGYRRRARLSLNCPPDKPLQMGFRKAGSSDIV 156 Query: 72 RIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAW 131 ++ + + AL+ + A + R L ++ + + S ++ L + L A Sbjct: 157 NVEQCPVLAPRLEALLPRIRACLASLHGTRH-LGHVELVQAGSGTLMI-LRHTAPLSAAD 214 Query: 132 RECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPN 191 +E R H+ + L + + E L F Q N Sbjct: 215 KEKLERFS---HSEGLSLFLAPFSEILETVSG-----EAPWYDSHGLRLAFSPRDFIQVN 266 Query: 192 AGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN 250 +N M+ L D +L+L+CG GNF+L LA V+ VE VE R N Sbjct: 267 EAVNQQMVARALEWLDVRAEDRVLDLFCGMGNFTLPLATRAASVVGVEGVPALVEKGREN 326 Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310 N ++NV + +E + F + +DP R+G Sbjct: 327 AIRNGLHNVTFFHENLEE------------DVTKQPWAKNGFDKVLLDPARAGATGVMRH 374 Query: 311 MVQAYP-HILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364 +++ P I+Y+SCNP +L RD L + + + RLA+ D FP+T H+E VL R Sbjct: 375 IIKLKPIRIVYVSCNPATLARDSEALVNAGYEVTRLAMLDMFPHTGHLESMVLFER 430 >gi|268319868|ref|YP_003293524.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus johnsonii FI9785] gi|262398243|emb|CAX67257.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus johnsonii FI9785] Length = 459 Score = 234 bits (596), Expect = 2e-59, Method: Composition-based stats. Identities = 63/387 (16%), Positives = 134/387 (34%), Gaps = 40/387 (10%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHDGDD 57 L Y +QL K + + + + + I +YR +A++ I + Sbjct: 88 LAHLSYPKQLEFKQHLILESLRKYHPRDYIKYKVKKTIPAPNAWNYRNKAQYQIEFNKGK 147 Query: 58 LYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLFQ 106 ++ ++ + + + LI+ L I + R ++ + Sbjct: 148 SKLGLYAPNSRRLIDLPDMPTQTKGTQKVEREIKKLIDKLHIRIADFRRHTDGIKTIAVR 207 Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDAL---HARKYQIQLIGRANKTKICLD 163 T + ++T+ ++L + + NKT Sbjct: 208 QSNATGEIQVTLITIGKKIKDLKLLASHIMKLPNVVSVFQNETQWQNPQVWGNKTIKLFG 267 Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGN 222 + ++ E + ++ +F Q N + L L++ Y G G Sbjct: 268 KSHITEEILGK----KFKLSPRAFFQLNPEQTTTLYSEALKYLDLTPDQTLIDAYAGVGT 323 Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282 ++ + +V+ +E +V A+ N NHV N + ++ + ++ L Sbjct: 324 LGILASDQVRQVIGIESIPEAVIDAQENCRLNHVRNAEYIQGNVEKL------------L 371 Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLSILSTTHT 340 ++ + VDPPR+GL + + +Y+SCNP +L +DL +LS + Sbjct: 372 PELKNQGVPINALIVDPPRTGLSKKLIKTLLEVKPETFVYVSCNPATLAKDLVLLSEAYD 431 Query: 341 IERLALFDQFPYTRHMECGVLLVRKPS 367 + + D P T E LV + + Sbjct: 432 VRVIQPVDMMPQTPRWEGVTKLVLRKN 458 >gi|206576756|ref|YP_002236864.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Klebsiella pneumoniae 342] gi|226725382|sp|B5XV15|RUMA_KLEP3 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|206565814|gb|ACI07590.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Klebsiella pneumoniae 342] Length = 434 Score = 234 bits (596), Expect = 2e-59, Method: Composition-based stats. Identities = 82/358 (22%), Positives = 137/358 (38%), Gaps = 30/358 (8%) Query: 13 QLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQT--KER 70 Q K L ++M ++ P YR RA + + M +Q K Sbjct: 100 QQQSKRAALARLMKR---EVDEVIAGVPWGYRRRARLSLNYQPKTQQLQMGFRQANAKAI 156 Query: 71 MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDA 130 + + + + AL+ + + LR L ++ + + + +V + H A Sbjct: 157 VDVVQCPVLAPQLEALLPAVRECLSALSALRH-LGHVELVQADNGPLMV--LRHTAALPA 213 Query: 131 WRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQP 190 +L + L ++ + E L F Q Sbjct: 214 G--DREKLERFSQTHGLSLYLAPQSEILEHIHG-----EAPWYTSDGLRLVFSPRDFIQV 266 Query: 191 NAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249 N G+N M+ L D +L+L+CG GNF+L LA V+ VE VE R Sbjct: 267 NDGVNQQMVRTALEWLDLQPEDRVLDLFCGMGNFTLPLATRAAHVVGVEGVPALVEKGRE 326 Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309 N A N ++NV + +E + F + +DP R+G Sbjct: 327 NAALNGLSNVTFFHENLEEDVTRQA------------WAKHGFDKVLLDPARAGAPGVMP 374 Query: 310 GMVQAYP-HILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 +++ P ++Y+SCNP +L RD +L + I+RLA+ D FP+T H+E VL R+ Sbjct: 375 HIIKLAPRRVVYVSCNPATLARDSETLLQAGYQIQRLAMLDMFPHTGHLESMVLFERR 432 >gi|225848202|ref|YP_002728365.1| 23S rRNA (uracil-5-)-methyltransferase [Sulfurihydrogenibium azorense Az-Fu1] gi|225643068|gb|ACN98118.1| 23S rRNA (uracil-5-)-methyltransferase [Sulfurihydrogenibium azorense Az-Fu1] Length = 420 Score = 234 bits (596), Expect = 2e-59, Method: Composition-based stats. Identities = 78/371 (21%), Positives = 156/371 (42%), Gaps = 33/371 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI---FRSEPIHYRMRAEFHIWHDGDDL 58 YE+Q+ K + L+ +L +L I + S+P +YR++ +F D Sbjct: 74 GCDFQHIPYEKQIEIKKEILKDQLLRIGKVDLPIEKVYPSQPFNYRIKVQFKF----DGK 129 Query: 59 YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAI 118 + Q + + + IDY N ++ + + L + Q+ ++ +Q + Sbjct: 130 NFGFYRQNSNQVIDIDYCYLLKEDFNQIIHPLKKFLFKYALSPS---QVIVFSNSKNQKL 186 Query: 119 VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTL 178 + ++ A I + + K ++ L + E + Sbjct: 187 IKFVFPDNSQIANIIPKIEIYKDEIDENIKGIGFYDKKKRQLLLGEYVIFETV----DNY 242 Query: 179 IYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNFSLVLARHFDRVLAV 237 YR +SF Q N ++++ V+ K ++ YCG G FS+ LA + VL + Sbjct: 243 KYRVSMDSFFQVNIYQIKNLIDLVVQEVKDKGYKRAVDFYCGVGTFSVPLANYVREVLGI 302 Query: 238 EIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFV 297 E + +V+ A+ N+ N++ N+K ++ +++ + ++ + + Sbjct: 303 ESNEEAVKDAKTNVRHNNLKNLKFLKAKTEKGLKY--------------AKDFKPEVVVF 348 Query: 298 DPPRSGLDDAT---VGMVQAYPHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYT 353 DPPRSGL+ + +++ I+YISCNP +L RDL ++++ D FP T Sbjct: 349 DPPRSGLNKTIIREISKIESIQKIIYISCNPSTLARDLKDFKEYGFNPLKVSMVDMFPQT 408 Query: 354 RHMECGVLLVR 364 H+E V+L + Sbjct: 409 HHIESVVVLEK 419 >gi|148981901|ref|ZP_01816559.1| 23S rRNA (uracil-5-)-methyltransferase [Vibrionales bacterium SWAT-3] gi|145960702|gb|EDK26044.1| 23S rRNA (uracil-5-)-methyltransferase [Vibrionales bacterium SWAT-3] Length = 439 Score = 234 bits (596), Expect = 2e-59, Method: Composition-based stats. Identities = 76/371 (20%), Positives = 143/371 (38%), Gaps = 30/371 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRS---EPIHYRMRAEFHIWHDGDDL 58 L Y+ Q+ K L +M ++ ++ + + YR RA ++ D Sbjct: 90 GCHLQHLGYQSQIEHKAQSLTHLMSQYKTDETEMAQPIVGDETGYRRRARISLFVD-KKT 148 Query: 59 YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAK--LFQIDYLTSQSDQ 116 + + F + K+ +I+ ++L L + + L L ++ + + Sbjct: 149 HKLQFGFRKKQSKQIENITDCAVLEPRLNVLLPKVKNLLNTFSNLTSLGHVELVLGDTGP 208 Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGR 176 +V R L L + + +K + + G Sbjct: 209 VMVL----RHLKPLIERDEQALIALAKEEGAILYSMPETDKLVRLVGDA---PSYSETGV 261 Query: 177 TLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVL 235 TL + N F Q N +N M+ + + + +L+L+CG GNFSL +A+ V+ Sbjct: 262 TLPFE--PNHFIQVNQKVNQQMVAQAIEWLEPKADERVLDLFCGLGNFSLPIAQQSAFVV 319 Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295 VE V+ A N N ++N + + + +E A +E +F I Sbjct: 320 GVEGVDEMVQQATSNAQLNQLSNTEFYQANLEEDLSAQAWAKE------------KFDKI 367 Query: 296 FVDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYT 353 +DP R+G + ++Y+SCNP +L RD L + + +L + D FP+T Sbjct: 368 LLDPARAGASGVVDQISALGAKRVVYVSCNPATLARDSESLEKQGYQLAKLGMLDMFPHT 427 Query: 354 RHMECGVLLVR 364 H+E L ++ Sbjct: 428 SHLESMALFIK 438 >gi|143581977|sp|Q0HL77|RUMA_SHESM RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase Length = 449 Score = 234 bits (596), Expect = 2e-59, Method: Composition-based stats. Identities = 87/376 (23%), Positives = 145/376 (38%), Gaps = 34/376 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN---LQIFRSEPIHYRMRAEFHIWHDG--D 56 L Q K L +M F + E HYR RA D Sbjct: 91 GCDLQHMSLAGQREHKSAALVDIMAKFAGAEGNSVPALTGEGWHYRRRARLATLFDKNTK 150 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116 L + + + ID + + ++ L I A + + ++ L ++ + + + Sbjct: 151 QLSLGFRASSSNQVVPIDSCLVLAKPLSDL-IAPFAKLLNQLAAKSSLGHLELIDADNGH 209 Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRA------NKTKICLDRDYVDER 170 V I L D + +L + I L N T + +D++ Sbjct: 210 FAVIRITKSLND----KDMAKLAQFAEHHQIHICLQDNNGEFHGVNGTLLLPVYQLLDDK 265 Query: 171 LTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLAR 229 +L + +F Q NA IN M+ L G+ +L+L+CG GNFSL LA+ Sbjct: 266 AGATPVSLTF--TPGNFVQVNAQINKAMVAQALDWLAPQPGERILDLFCGMGNFSLPLAK 323 Query: 230 HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHS 289 V+ VE V AR N AAN ++N+ + + E ++ Sbjct: 324 LGAEVIGVEGVPDMVSQARENAAANGLSNLTFYHGD---LSADLSCEPWMGKI------- 373 Query: 290 YRFKTIFVDPPRSGLDDATVGMVQAYPH-ILYISCNPDSLCRD-LSILSTTHTIERLALF 347 + +DP R+G ++ + + P ++Y+SCNP SL RD +L + +++L L Sbjct: 374 ---DKLLLDPARAGAFESLQWLKKMKPRQVVYVSCNPASLARDSAVLLERGYKLQKLGLI 430 Query: 348 DQFPYTRHMECGVLLV 363 D FP T H+E L Sbjct: 431 DMFPQTHHIEAMALFE 446 >gi|117919559|ref|YP_868751.1| 23S rRNA 5-methyluridine methyltransferase [Shewanella sp. ANA-3] gi|143581951|sp|A0KU76|RUMA_SHESA RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|117611891|gb|ABK47345.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Shewanella sp. ANA-3] Length = 449 Score = 234 bits (596), Expect = 2e-59, Method: Composition-based stats. Identities = 87/376 (23%), Positives = 145/376 (38%), Gaps = 34/376 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN---LQIFRSEPIHYRMRAEFHIWHDG--D 56 L Q K L +M F + E HYR RA D Sbjct: 91 GCDLQHMSLAGQREHKSAALVDIMAKFAGAEGNSVPALTGEGWHYRRRARLATLFDKNTK 150 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116 L + + + ID + + + L I A + + ++ L ++ + + + Sbjct: 151 QLSLGFRASSSNQVVPIDSCLVLAKPLADL-IAPFAKLLNQLAAKSSLGHVELIDADNGH 209 Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRA------NKTKICLDRDYVDER 170 V I + L+D + +L + I L N T + +D+ Sbjct: 210 FAVIRI-TKPLND---KDMAKLAQFAEQHQIHICLQDNNGEFHGVNGTLLLPVYQLLDDN 265 Query: 171 LTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLAR 229 +L + +F Q NA IN M+ L G+ +L+L+CG GNFSL LA+ Sbjct: 266 ADATPVSLTF--TPGNFVQVNAQINKTMVAQALEWLAPQPGERILDLFCGMGNFSLPLAK 323 Query: 230 HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHS 289 V+ VE V AR N AAN ++N+ + + E ++ Sbjct: 324 LGAEVIGVEGVPEMVSQARENAAANGLSNLTFYHGD---LSADLSCEPWMGKI------- 373 Query: 290 YRFKTIFVDPPRSGLDDATVGMVQAYPH-ILYISCNPDSLCRD-LSILSTTHTIERLALF 347 + +DP R+G ++ + + P ++Y+SCNP SL RD +L + +++L L Sbjct: 374 ---DKLLLDPARAGAFESLQWLKKMKPRQVVYVSCNPASLARDSAVLLERGYKLQKLGLI 430 Query: 348 DQFPYTRHMECGVLLV 363 D FP T H+E L Sbjct: 431 DMFPQTHHIEAMALFE 446 >gi|313206559|ref|YP_004045736.1| 23S rRNA m(5)u-1939 methyltransferase [Riemerella anatipestifer DSM 15868] gi|312445875|gb|ADQ82230.1| 23S rRNA m(5)U-1939 methyltransferase [Riemerella anatipestifer DSM 15868] Length = 469 Score = 234 bits (596), Expect = 2e-59, Method: Composition-based stats. Identities = 64/389 (16%), Positives = 130/389 (33%), Gaps = 44/389 (11%) Query: 9 QYEQQLAEKVDRLRQMMLAFQV-----PNLQIFRSEPIHYRMRAEFHI----WHDGDDLY 59 YE+QL K + + + + YR + EF W +++ Sbjct: 91 SYEKQLEFKQSEVLNNLKRIGGLTDFEALPILGSPQEYFYRNKMEFSFSNARWLTSEEIL 150 Query: 60 HIMFDQQTK-----------ERMRIDYFMPGSLLINALMIEMMATIRLEPL-------LR 101 + + + + N + + + L Sbjct: 151 NGADIDNKNALGFHIPGMWSKILDLKECFLQETPSNEIRLAVKNYADANQLEFFDVKNQE 210 Query: 102 AKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161 L + + + +V +++ + L + K + I I Sbjct: 211 GFLRTLMLRQNSKGEWMVLFQFYKEQKEDREALFEYLLNTFPQIKTLVYAINPKPNDSIY 270 Query: 162 ---LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELY 217 ++ Y D L L ++ SF Q N + + + L +++ +LY Sbjct: 271 DLEVETYYGDGFLIEEMEDLQFKIGPKSFFQTNYQQALALYQKTLEFADLKGDEVVYDLY 330 Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277 G G + +AR +V+ +E ++ AA+ + N ++N K+ Sbjct: 331 TGTGTIAQFVARKAKQVIGIESVPEAIAAAKEHAKHNGLDNCTFYCGDMKDIFTD----- 385 Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSIL 335 + + + DPPR G+ V + A I+Y+SCN + RDL+++ Sbjct: 386 ------EFLAQHPKADVLITDPPRDGMHQKVVEQILKLAPEKIVYVSCNSATQARDLALM 439 Query: 336 STTHTIERLALFDQFPYTRHMECGVLLVR 364 + +E++ D FP T H+E LL + Sbjct: 440 KEHYRVEKILPVDMFPQTHHIENIALLKK 468 >gi|270160130|ref|ZP_06188786.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Legionella longbeachae D-4968] gi|289165093|ref|YP_003455231.1| 23S rRNA (Uracil-5-)-methyltransferase RumA [Legionella longbeachae NSW150] gi|269988469|gb|EEZ94724.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Legionella longbeachae D-4968] gi|288858266|emb|CBJ12134.1| 23S rRNA (Uracil-5-)-methyltransferase RumA [Legionella longbeachae NSW150] Length = 444 Score = 234 bits (596), Expect = 2e-59, Method: Composition-based stats. Identities = 86/377 (22%), Positives = 153/377 (40%), Gaps = 32/377 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSE----PIHYRMRAEFHIWHDGDD 57 +L E+Q+ K D+L ++ + Q S +YR +A + + Sbjct: 85 GCSLQHLSQEEQIHFKQDQLLDLLSRYGHTKPQTVLSPLVANYWNYRNKARLSVRYVEKK 144 Query: 58 LYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLL--RAKLFQIDYLTSQSD 115 ++ ++ I +L L ++M L + + + QI+ + Sbjct: 145 QATMIGFRERNNPRYITEITQCPVLNAKLDSDIMPLRHLIDSMDNKYCIAQIEVAAGDDE 204 Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL----DRDYVDERL 171 A++ R L E ++L+ Y+I L ++ C +Y+ L Sbjct: 205 IALI----FRNLTPLTAEDELKLKKFAEEYHYKIYLQPGGPESIYCFYPADSNEYLAYHL 260 Query: 172 TVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARH 230 + + FTQ N+ +N M+ L D +L+L+CG GNFSL +A+ Sbjct: 261 PDFQISFAFH--PTDFTQINSMLNQSMVALALQLMDLKSTDIVLDLFCGLGNFSLPMAKF 318 Query: 231 FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY 290 +VL VE +K VE A N NH++NV+ + + N +K + Sbjct: 319 CSKVLGVEGSKTMVERASMNAKKNHLSNVEFYAANLDDV----------NEVKKLVQQP- 367 Query: 291 RFKTIFVDPPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDLSIL--STTHTIERLALF 347 + +DPPRSG + + P I+Y+SCNP +L RD IL + + + + Sbjct: 368 -CNKVLIDPPRSGALEIVKQIDLLNPERIVYVSCNPITLARDTDILVNQKNYILIKAGVM 426 Query: 348 DQFPYTRHMECGVLLVR 364 D FP+T H+E + + Sbjct: 427 DMFPHTAHVESIAMFEK 443 >gi|113969454|ref|YP_733247.1| 23S rRNA 5-methyluridine methyltransferase [Shewanella sp. MR-4] gi|113884138|gb|ABI38190.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Shewanella sp. MR-4] Length = 463 Score = 234 bits (596), Expect = 2e-59, Method: Composition-based stats. Identities = 87/376 (23%), Positives = 145/376 (38%), Gaps = 34/376 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN---LQIFRSEPIHYRMRAEFHIWHDG--D 56 L Q K L +M F + E HYR RA D Sbjct: 105 GCDLQHMSLAGQREHKSAALVDIMAKFAGAEGNSVPALTGEGWHYRRRARLATLFDKNTK 164 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116 L + + + ID + + ++ L I A + + ++ L ++ + + + Sbjct: 165 QLSLGFRASSSNQVVPIDSCLVLAKPLSDL-IAPFAKLLNQLAAKSSLGHLELIDADNGH 223 Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRA------NKTKICLDRDYVDER 170 V I L D + +L + I L N T + +D++ Sbjct: 224 FAVIRITKSLND----KDMAKLAQFAEHHQIHICLQDNNGEFHGVNGTLLLPVYQLLDDK 279 Query: 171 LTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLAR 229 +L + +F Q NA IN M+ L G+ +L+L+CG GNFSL LA+ Sbjct: 280 AGATPVSLTF--TPGNFVQVNAQINKAMVAQALDWLAPQPGERILDLFCGMGNFSLPLAK 337 Query: 230 HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHS 289 V+ VE V AR N AAN ++N+ + + E ++ Sbjct: 338 LGAEVIGVEGVPDMVSQARENAAANGLSNLTFYHGD---LSADLSCEPWMGKI------- 387 Query: 290 YRFKTIFVDPPRSGLDDATVGMVQAYPH-ILYISCNPDSLCRD-LSILSTTHTIERLALF 347 + +DP R+G ++ + + P ++Y+SCNP SL RD +L + +++L L Sbjct: 388 ---DKLLLDPARAGAFESLQWLKKMKPRQVVYVSCNPASLARDSAVLLERGYKLQKLGLI 444 Query: 348 DQFPYTRHMECGVLLV 363 D FP T H+E L Sbjct: 445 DMFPQTHHIEAMALFE 460 >gi|325106371|ref|YP_004276025.1| 23S rRNA m(5)U-1939 methyltransferase [Pedobacter saltans DSM 12145] gi|324975219|gb|ADY54203.1| 23S rRNA m(5)U-1939 methyltransferase [Pedobacter saltans DSM 12145] Length = 465 Score = 234 bits (596), Expect = 2e-59, Method: Composition-based stats. Identities = 76/399 (19%), Positives = 146/399 (36%), Gaps = 47/399 (11%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPI-HYRMRAEFHI----W 52 Y+ QL K + + ++ I S +YR + E+ W Sbjct: 80 GCKWQHMDYKAQLKYKQKSVVDALQRLGGVEVEHAEDILPSNETVYYRNKLEYTFSNKRW 139 Query: 53 HDGDDLYHI----MFDQQTK------ERMRIDYFMPGSLLINALMIEMMATIRLEPL--- 99 +D+ M + + +++ + N + + + Sbjct: 140 LTNEDIASGLDKEMNALGFHVPLRFDKILDVEHCYLQADPSNDIRNSIRVFALENDISFY 199 Query: 100 -LRAK---LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRA 155 LRA L + TS + +++V +++ + + + ++ + Sbjct: 200 DLRAHEGALRNLIIRTSSTGESMVIVVFAYPEEGEINLLMDYVDKTFPQITSLLYIVNQ- 258 Query: 156 NKTKICLDRDYVDER----LTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG 211 K D+D + R + L +R SF Q N+ L + G+ G Sbjct: 259 KKNDTIFDQDVITYRGNPFIYEEMEGLKFRVGPKSFYQTNSLQAYE-LYKITREFAGLSG 317 Query: 212 D--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269 + + +LY G G + +AR V+ VE ++E A+ N A N++ N K K+ Sbjct: 318 NELVYDLYTGTGTIANFVARQAREVVGVEYVPSAIEDAKVNSAINNIPNTKFYAGDMKDV 377 Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDS 327 A + + + DPPR+G+ V + ++Y+SCN + Sbjct: 378 LSA-----------EFIAEHGKPDVVITDPPRAGMHADVVARLMDMEAEKVVYVSCNAAT 426 Query: 328 LCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRKP 366 RDL+IL + + R+ D FP+T+H+E VLL + Sbjct: 427 QARDLAILKDKYDVARIKPVDMFPHTQHVENVVLLKLRK 465 >gi|168215741|ref|ZP_02641366.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium perfringens NCTC 8239] gi|182382137|gb|EDT79616.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium perfringens NCTC 8239] Length = 451 Score = 233 bits (595), Expect = 3e-59, Method: Composition-based stats. Identities = 79/395 (20%), Positives = 147/395 (37%), Gaps = 53/395 (13%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMM--LAFQVPNLQIFRSEP--IHYRMRAEFHIWHD--- 54 + YE+QL KV++++ + Q + P YR + E+ + Sbjct: 79 GCSSQTIPYEKQLELKVEQVKDLFKEAEVQTGEFLGIETSPIQWEYRNKMEYTFGDEEKG 138 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGSLL---INALMIEMMAT--------IRLEPLLRAK 103 G+ + ++ + +D + I ++ + LR Sbjct: 139 GELTLGMHMKGKSFGIVNVDKCVLVDEDFRNILDTTVKYFREKGLPFYKIMPRTGYLRYL 198 Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAI---------RLRDALHARKYQIQLIGR 154 + + ++++ +V L+ +D E +L+ +H + Sbjct: 199 VVRKSV---KTEEILVNLVTTTQIDFDLTEFTELIKGLNLKGKLKSIIHTESDALSEAVI 255 Query: 155 ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL 214 K I D++ E L L ++ SF Q N+ + V ++ Sbjct: 256 PEKVNILYGDDFITENLL----GLNFKISPFSFFQTNSLGAEKLYSIVRDFMGAADNKVV 311 Query: 215 -ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273 +LYCG G + A +V+ +E+ + + AA N N +NN + E + + Sbjct: 312 FDLYCGTGTIGQIAAGKASKVIGIELIEEAAMAANENAKLNGLNNCNFIAGDVAEVIKTV 371 Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRD 331 + + I +DPPRSG+ + V + P I+Y+SCNP +L D Sbjct: 372 K---------------DKPDIIILDPPRSGVHPKALDYVIKFNAPQIIYVSCNPKTLVTD 416 Query: 332 LSILS-TTHTIERLALFDQFPYTRHMECGVLLVRK 365 L +L + IE+ L D FP T H+E V L +K Sbjct: 417 LKVLEAKGYEIEKTLLMDMFPNTPHVETVVKLNKK 451 >gi|152971649|ref|YP_001336758.1| 23S rRNA 5-methyluridine methyltransferase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238896246|ref|YP_002920982.1| 23S rRNA 5-methyluridine methyltransferase [Klebsiella pneumoniae NTUH-K2044] gi|226725383|sp|A6TD57|RUMA_KLEP7 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|150956498|gb|ABR78528.1| 23S rRNA (uracil-5-)-methyltransferase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238548564|dbj|BAH64915.1| 23S rRNA (uracil-5-)-methyltransferase [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 434 Score = 233 bits (595), Expect = 3e-59, Method: Composition-based stats. Identities = 82/369 (22%), Positives = 135/369 (36%), Gaps = 30/369 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHI 61 Q K L ++M + P YR RA + + Sbjct: 89 GCQQQHASVPLQQQSKRAALGRLMKR---EVDDVIAGAPWGYRRRARLSLNYQPKTQQLQ 145 Query: 62 MFDQQT--KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119 M +Q K + + + AL+ + + LR L ++ + + + +V Sbjct: 146 MGFRQANAKAIVDVVQCPVLVPQLEALLPAVRECLSALSALRH-LGHVELVQADNGPLMV 204 Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179 + H A +L + L ++ + E L Sbjct: 205 --LRHTAALPAT--DREKLERFSQTHGLSLYLAPQSEILEHIHG-----EAPWYTSDGLR 255 Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVE 238 F Q N G+N M+ L D +L+L+CG GNF+L LA V+ VE Sbjct: 256 LVFSPRDFIQVNDGVNQQMVRTALEWLDLRPEDRVLDLFCGMGNFTLPLATRAAHVVGVE 315 Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298 VE R N A N ++NV + +E + F + +D Sbjct: 316 GVPALVEKGRENAARNGLSNVTFFHENLEEDVTRQA------------WAKHGFDKVLLD 363 Query: 299 PPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHM 356 P R+G +++ P ++Y+SCNP +L RD +L + I+RLA+ D FP+T H+ Sbjct: 364 PARAGAPGVMPHIIKLAPRRVVYVSCNPATLARDSETLLQAGYQIQRLAMLDMFPHTGHL 423 Query: 357 ECGVLLVRK 365 E VL R+ Sbjct: 424 ESMVLFERR 432 >gi|325280541|ref|YP_004253083.1| RNA methyltransferase, TrmA family [Odoribacter splanchnicus DSM 20712] gi|324312350|gb|ADY32903.1| RNA methyltransferase, TrmA family [Odoribacter splanchnicus DSM 20712] Length = 477 Score = 233 bits (595), Expect = 3e-59, Method: Composition-based stats. Identities = 77/398 (19%), Positives = 143/398 (35%), Gaps = 60/398 (15%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPNLQ-----IFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63 YE+QL K + + LQ I + ++YR + EF + + Sbjct: 89 PYEKQLEFKQQEINDNLQRIGKIKLQNVYPIIGSARQLYYRNKLEFTFSNKRFLTREEIS 148 Query: 64 DQQTKER---------------MRIDYFMPGSLLINALM-----------IEMMATIRLE 97 + ER + ID+ N + + + Sbjct: 149 READIERTPALGFHVPGLFDKVVDIDHCCLQGSSSNEIRNFIKTYALKKGLSFYDIRAQQ 208 Query: 98 PLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRA-- 155 LR + + T+ + + +V L + A + L + +I Sbjct: 209 GFLRTLIIR----TASTGEIMVILAFGHEDTGAREQLLETLVRQFPQITSLMYVINEKLN 264 Query: 156 ----NKTKICL-DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGI 209 ++ C RD++ E + L ++ SF Q N+ ++ A Sbjct: 265 DNLTDQDMFCFHGRDHIFEEM----EGLKFKIGPKSFYQTNSEQAYNLYSKTRELAGLTG 320 Query: 210 QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269 Q + +LY G G + +AR +V+ +E ++E A+ N A NH++N K+ Sbjct: 321 QETVYDLYTGTGTIANFIARQARKVIGIEYVPEAIEDAKVNSAINHIDNTIFYAGDMKDV 380 Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDS 327 A + I DPPR+G+ V + + I+Y+SCN + Sbjct: 381 LNA-----------SFISKHGQPDIIITDPPRAGMHPDVVQTILQASPERIVYVSCNSAT 429 Query: 328 LCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 RDL ++ + + + + D FP+T H+E VLL ++ Sbjct: 430 QARDLQMMDSAYEVIAVQPVDMFPHTHHVENIVLLRKR 467 >gi|158521596|ref|YP_001529466.1| RNA methyltransferase [Desulfococcus oleovorans Hxd3] gi|158510422|gb|ABW67389.1| RNA methyltransferase, TrmA family [Desulfococcus oleovorans Hxd3] Length = 471 Score = 233 bits (595), Expect = 3e-59, Method: Composition-based stats. Identities = 86/402 (21%), Positives = 150/402 (37%), Gaps = 58/402 (14%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ----VPNLQIFRSEP-IHYRMRAEFHIW---- 52 L I Y++QL K +++ + VP + ++P YR + EF Sbjct: 89 GCRLQILDYDKQLDCKHEQVADALRHIGLVENVPVHPVMPADPVWGYRNKMEFSFADRRW 148 Query: 53 ----------HDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLL-- 100 D + + + +D + NA++ ++ A R + Sbjct: 149 LLPEEMEMENIDTSFALGLHVPGTFHKVIDVDACLLLPEPGNAILGDVRAYARASGVPAY 208 Query: 101 ---------RAKLFQIDYLTSQSDQAIVTLIYHR----LLDDAWRECAIRLRDALHARKY 147 R + + IVT R L D + + ++ Sbjct: 209 GLKSHQGFWRFLMLRHSVAHDNWMVNIVTAAEDRRLLQPLADLLADRYPEVVSVVNNITA 268 Query: 148 QIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATK 207 + + + + ++ +RL + NSF Q N L V Sbjct: 269 RKAGVAQGEYEILLHGAPFISDRLGR----FSFDISANSFFQTNTRGAER-LYTVAREYA 323 Query: 208 GIQG--DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265 G+ G +++LYCG G ++ L+ V+ +EI + A N N+V+NV+ V Sbjct: 324 GLTGSQTVVDLYCGTGTIAIWLSGAAKEVIGLEINDSCLADAVNNCRTNNVSNVRFVAGD 383 Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISC 323 KE + R + +DPPR+G+ V V A P I+Y+SC Sbjct: 384 VKETLPRL---------------DCRADVLVIDPPRAGMHKDVVEQVLAMAPPRIVYVSC 428 Query: 324 NPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 NP +L RD+++LS +T+ + D FP+T H+EC L +K Sbjct: 429 NPATLARDVAMLSEAYTVAEVQPVDMFPHTPHIECVARLDKK 470 >gi|290511109|ref|ZP_06550478.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Klebsiella sp. 1_1_55] gi|289776102|gb|EFD84101.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Klebsiella sp. 1_1_55] Length = 434 Score = 233 bits (595), Expect = 3e-59, Method: Composition-based stats. Identities = 82/358 (22%), Positives = 136/358 (37%), Gaps = 30/358 (8%) Query: 13 QLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQT--KER 70 Q K L ++M ++ P YR RA + + M +Q K Sbjct: 100 QQQSKRAALARLMKR---EVDEVIAGVPWGYRRRARLSLNYQPKTQQLQMGFRQANAKAI 156 Query: 71 MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDA 130 + + + AL+ + + LR L ++ + + + +V + H A Sbjct: 157 VDVVQCPVLVPQLEALLPAVRECLSALSALRH-LGHVELVQADNGPLMV--LRHTAALPA 213 Query: 131 WRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQP 190 +L + L ++ + E L F Q Sbjct: 214 G--DREKLERFSQTHGLSLYLAPQSEILEHIHG-----EAPWYTSDGLRLVFSPRDFIQV 266 Query: 191 NAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249 N G+N M+ L D +L+L+CG GNF+L LA V+ VE VE R Sbjct: 267 NDGVNQQMVRTALEWLDLQPEDRVLDLFCGMGNFTLPLATRAAHVVGVEGVPALVEKGRE 326 Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309 N A N ++NV + +E + F + +DP R+G Sbjct: 327 NAALNGLSNVTFFHENLEEDVTRQA------------WAKHGFDKVLLDPARAGAPGVMP 374 Query: 310 GMVQAYP-HILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 +++ P ++Y+SCNP +L RD +L + I+RLA+ D FP+T H+E VL R+ Sbjct: 375 HIIKLAPRRVVYVSCNPATLARDSETLLQAGYQIQRLAMLDMFPHTGHLESMVLFERR 432 >gi|330997901|ref|ZP_08321735.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Paraprevotella xylaniphila YIT 11841] gi|329569505|gb|EGG51275.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Paraprevotella xylaniphila YIT 11841] Length = 491 Score = 233 bits (595), Expect = 3e-59, Method: Composition-based stats. Identities = 76/401 (18%), Positives = 142/401 (35%), Gaps = 56/401 (13%) Query: 4 TLLIDQYEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFHIW------ 52 L Y++QL K ++ + + + YR + EF Sbjct: 107 CLP---YKEQLKYKQQQVLDNLTRIGKVELNGVQPILGSVKTEEYRNKLEFGFSNKRWLT 163 Query: 53 -----------HDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLL- 100 +G +H + + I+ + N + + L Sbjct: 164 PEEIASGNAYPQNGAVGFHTCGSFD--KILPIEQCRLMDDINNRIRNAIRDYGYEHRLTF 221 Query: 101 -----RAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRA 155 A L + + + + ++ L+ + +D + A L L +I + Sbjct: 222 HDQREHAGLLRNMMIRNSNTGELMLLMQFCITNDTEKAQAEALMGYLAETFPEITSLLYV 281 Query: 156 NKTK---ICLDRDYVD----ERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKG 208 N K D D + + + + L ++ SF Q N L V G Sbjct: 282 NNLKYNDTIGDLDVITFRGNDHIYLQMENLRFKVGPKSFYQTNTDQAYE-LYKVARDFAG 340 Query: 209 IQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266 + G + +LY G G + +A +V+ +E ++E A+ N N + N Sbjct: 341 LTGTELVYDLYTGTGTIANFVAGKARKVIGIEYVPEAIEDAKINSQINGIGNTLFFAGDM 400 Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCN 324 K+ K+ + I DPPR+G+ + + A I+Y+SCN Sbjct: 401 KDILN-----------KEFIAAHGQPDVIITDPPRAGMHKDVIETILFAAPHRIVYVSCN 449 Query: 325 PDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 P + RDL++L + + I + D FP+T+H+E V+L R+ Sbjct: 450 PATQARDLALLDSQYKIMGVRPVDMFPHTQHVENVVMLERR 490 >gi|257784455|ref|YP_003179672.1| RNA methyltransferase, TrmA family [Atopobium parvulum DSM 20469] gi|257472962|gb|ACV51081.1| RNA methyltransferase, TrmA family [Atopobium parvulum DSM 20469] Length = 441 Score = 233 bits (595), Expect = 3e-59, Method: Composition-based stats. Identities = 82/372 (22%), Positives = 135/372 (36%), Gaps = 34/372 (9%) Query: 10 YEQQLAEKVDRLRQMMLAFQ---------VPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60 YEQQL EK + + + + + EP YR + E +G+ Sbjct: 86 YEQQLVEKRNSVVSALERIGHFSPDDVSELVKDIVSPGEPWGYRNKIELAFKRNGNKTLV 145 Query: 61 IMFDQQTKERMRIDYFMPGSLLINALMIEMMATI-RLEPLLRAKLFQIDYLTSQSDQAIV 119 M+ ++ +RI + + + L + +I S+ + + Sbjct: 146 GMYAPNGQDIVRIKDCPLLDKSNQKAVGAVSGALSYLSGSHELDVERIGIRVSRRTKELE 205 Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD--RDYVDERLTVAGRT 177 ++ + A L DA+ A + +K + + R + Sbjct: 206 VALWTAPSGFPRAQVARVLSDAVKATSVVRVMTKGPSKARRVVGVERLSGSGSWSELIDG 265 Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNFSLVLARHFDRVLA 236 + SF Q N ++E VL+ + ++LYCG G F+L LA+ V A Sbjct: 266 QKMQLSAPSFFQVNTKGAEKLVELVLSGLDVQPDDEAMDLYCGAGTFTLPLAKRAGFVSA 325 Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296 VE P+V R N+ ++NV V + D D I Sbjct: 326 VEAYGPAVRDLRRNLELAKLDNVDAVGGDAG------------REFPDTDA-----DVII 368 Query: 297 VDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILST--THTIERLALFDQFPY 352 VDPPR+GL + + P I Y+SC+P +L RDL ++ + D FP Sbjct: 369 VDPPRAGLAPDVIQQLSKQPARAIAYVSCDPATLARDLKRFVEIGSYKPVSVTPVDLFPQ 428 Query: 353 TRHMECGVLLVR 364 T H+E LL R Sbjct: 429 TFHVENVCLLKR 440 >gi|163783831|ref|ZP_02178812.1| RNA methyltransferase (TrmA-family) protein [Hydrogenivirga sp. 128-5-R1-1] gi|159880902|gb|EDP74425.1| RNA methyltransferase (TrmA-family) protein [Hydrogenivirga sp. 128-5-R1-1] Length = 408 Score = 233 bits (595), Expect = 3e-59, Method: Composition-based stats. Identities = 77/370 (20%), Positives = 147/370 (39%), Gaps = 42/370 (11%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWHDGDD 57 YE+Q+ K + L + + N I + P +YR R +F D Sbjct: 73 GCDFQHINYEKQVEIKKEILEETLQRIGKINKDTDKVIPSANPFNYRNRVQFKF----DG 128 Query: 58 LYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQA 117 + ++ E + I+ IN L+ + + P + +L + ++ Sbjct: 129 KNFGFYKLKSNEVVDIESCDIADKNINNLIPTLKNLAKNNPQVE-ELHIFHHPDNKPMLK 187 Query: 118 IVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRT 177 IV L + L D I NK + + R Sbjct: 188 IV-------LKENLFMNIENLLDTFAGIGVYI-----GNKRVKLEGKSFTFYR----AGK 231 Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAV 237 YR +SF Q N ++++ V++ + ++YCG G F+L ++ +V + Sbjct: 232 FNYRVSIDSFFQVNKYQLENIVDEVISEIPKDSQCIGDIYCGVGLFTLPASKKAKKVFGI 291 Query: 238 EIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFV 297 E +K +V+ A+YN+ +++ N K + ++ I Y T+ Sbjct: 292 EASKSAVKDAQYNVKVHNIGNAKFYQKVVEKSAD--------------IIFGYNPDTLIF 337 Query: 298 DPPRSGLDDATVG---MVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTR 354 DPPR+G+ + +++ I+Y+SCNP + RD+++LS ++++ L D FP T Sbjct: 338 DPPRTGIPKNIIQKLLQLKSLKRIIYVSCNPSTASRDINLLSEKFELKKVKLIDMFPQTH 397 Query: 355 HMECGVLLVR 364 H+E +L + Sbjct: 398 HIESIFVLDK 407 >gi|295426431|ref|ZP_06819081.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus amylolyticus DSM 11664] gi|295063799|gb|EFG54757.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus amylolyticus DSM 11664] Length = 461 Score = 233 bits (595), Expect = 3e-59, Method: Composition-based stats. Identities = 70/386 (18%), Positives = 138/386 (35%), Gaps = 40/386 (10%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHDGDD 57 L Y +QL K + + + F N I + HYR +A + I D Sbjct: 92 LAHLSYAKQLEFKKANVIEALRKFHPRNYDKYKVKNTIPAPDQWHYRAKASYQIERDHGK 151 Query: 58 LYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-----------LRAKLFQ 106 ++ + + + S ++ I + ++ + + Sbjct: 152 NKLGLYAPNSHRLIDLPVMPTQSEGTQKTERDIKHLIEKNHVFIADRRKHLDGIKTIVVR 211 Query: 107 IDYLTSQSDQAIVTLIYH-RLLDDAWRECAI--RLRDALHARKYQIQLIGRANKTKICLD 163 T + ++T+ + + L + +E + NKT+ L Sbjct: 212 QSEATKEIQVTLITVGHKIKNLMNLAKEIMNLPNVVSVYQNETDWRNPQVWGNKTEKLLG 271 Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGN 222 ++ + E + + +F Q N + L L++ Y G G Sbjct: 272 KNQITEVILGK----KFELSPRAFFQLNPVQTETLYSEALKFLDLTPDQTLIDAYSGVGT 327 Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282 ++ A +V+ +E +VE A++N+ NH+ N + S ++ L Sbjct: 328 LGILAADQVKQVVGIETIPEAVEDAKHNVQINHIKNADYFQGSVEKV------------L 375 Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLSILSTTHT 340 ++ + VDPPR+GL + + + +YISCNP +L +DL +L+ ++ Sbjct: 376 PELQKGGLPIDALIVDPPRTGLAKSLIKTLLRVKPQTFVYISCNPSTLAQDLILLTESYD 435 Query: 341 IERLALFDQFPYTRHMECGVLLVRKP 366 + + D P T EC V LV + Sbjct: 436 VRLIENVDMLPQTPRCECVVKLVLRK 461 >gi|225011827|ref|ZP_03702265.1| RNA methyltransferase, TrmA family [Flavobacteria bacterium MS024-2A] gi|225004330|gb|EEG42302.1| RNA methyltransferase, TrmA family [Flavobacteria bacterium MS024-2A] Length = 471 Score = 233 bits (594), Expect = 3e-59, Method: Composition-based stats. Identities = 76/400 (19%), Positives = 144/400 (36%), Gaps = 53/400 (13%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL-QIFR----SEPIHYRMRAEFHI----W 52 L YE QL K + + ++ ++ P +YR + EF W Sbjct: 84 GCKLQHLAYEGQLEFKEKGVLHNLNHIGKIDIKEVLPIARVENPYYYRNKMEFSFSNKRW 143 Query: 53 HDGDDLYHIMFDQQT----------KERMRIDYFMPGSLLINALMIEMMATIRLEPL--- 99 +++ ++ + + ID+ + NA+ + + E L Sbjct: 144 LTSEEISGGAEIERNGLGFHKPGMWDKVVDIDHCHLQAEPSNAIRNAIRSFAIQEQLEFF 203 Query: 100 ----LRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRA 155 + L + + + +V + + + + L++ + + Sbjct: 204 DTREQQGFLRTLMIRNTLGGELMVLIQFFKEDQEKRELLLNFLKEKFPQITSLLYCVNSK 263 Query: 156 N-----KTKIC--LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKG 208 I +D++ E L L ++ SF Q N +L + Sbjct: 264 GNDSLYDQNILCYYGQDFITEHLG----DLQFKITAKSFYQTNPKQAE-VLYSIGKDFAA 318 Query: 209 IQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266 ++G+ + +LY G G +L LA+ +++ VE ++EAA N N + N Sbjct: 319 LKGNEIVYDLYTGTGTIALSLAKQCAKIIGVESVPEAIEAANENATFNKIKNATFEVGDM 378 Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCN 324 K+ D + + + DPPR+G+ V + A I+YISCN Sbjct: 379 KDCFND-----------DFIKRHGKAEVVITDPPRNGMHPDVVKQLLKLAPQRIVYISCN 427 Query: 325 PDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 + RDL ++ +T+ + D FP T H+E VLL R Sbjct: 428 SSTQARDLELMKGMYTVVKSQAVDMFPQTHHVENVVLLHR 467 >gi|188534844|ref|YP_001908641.1| 23S rRNA 5-methyluridine methyltransferase [Erwinia tasmaniensis Et1/99] gi|226725381|sp|B2VFZ2|RUMA_ERWT9 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|188029886|emb|CAO97770.1| 23S rRNA (uracil-5-)-methyltransferase [Erwinia tasmaniensis Et1/99] Length = 438 Score = 233 bits (594), Expect = 3e-59, Method: Composition-based stats. Identities = 84/361 (23%), Positives = 145/361 (40%), Gaps = 30/361 (8%) Query: 13 QLAEKVDRLRQMMLAFQVPNLQ---IFRSEPIHYRMRAEFHIWHDGDDL--YHIMFDQQT 67 Q K L +++ + ++ I S P YR RA + + ++ + Sbjct: 100 QQESKAKALSRLLSKPRGETVEVDDIIASRPWGYRRRARLGLSFQPKSQTLHMGFREKSS 159 Query: 68 KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLL 127 E + I +NAL+ + A + +R +L ++ + + S +V R L Sbjct: 160 SELVNISQCPILKPELNALLQPLHAVLSSLQAVR-RLGHVELVQADSGSLLVL----RHL 214 Query: 128 DDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSF 187 D E +L H + + L ++ + L F Sbjct: 215 DALTAEDRQKLERFSHQYRLSLFLAAESDTLEQVSGGMP-----HYQSHDLTLTFSPRDF 269 Query: 188 TQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246 Q N +N M+ LA D +L+L+CG GNF+L + + V+ VE V Sbjct: 270 IQVNDDVNQQMVARALAWLDLQPEDRVLDLFCGMGNFTLPMGKFAKNVVGVEGVAALVAK 329 Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306 A YN N +NNV + + +E E F + +DP R+G Sbjct: 330 AGYNAELNCLNNVAFWQHNLEEDVSRQPWAVE------------GFNKVLLDPARAGAAG 377 Query: 307 ATVGMVQAYP-HILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 +++ P ++Y+SCNP +L RD +L++ + +ER+ + D FP+T H+E VL R Sbjct: 378 VMAHIIKIAPQRVVYVSCNPTTLARDSEILLTSGYQLERVTMLDMFPHTGHLESMVLFSR 437 Query: 365 K 365 K Sbjct: 438 K 438 >gi|168236003|ref|ZP_02661061.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194733918|ref|YP_002115909.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|194709420|gb|ACF88641.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197290826|gb|EDY30180.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] Length = 431 Score = 233 bits (594), Expect = 3e-59, Method: Composition-based stats. Identities = 84/356 (23%), Positives = 139/356 (39%), Gaps = 29/356 (8%) Query: 13 QLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ-QTKERM 71 Q K L ++M + I EP YR RA + D + F + + + + Sbjct: 100 QQRSKSAALARLM---KHEVNDIIAGEPWGYRRRARLSLNCLPDKPLQMGFRKAGSSDIV 156 Query: 72 RIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAW 131 ++ + + AL+ + A + R L ++ + + S ++ L + L A Sbjct: 157 NVEQCPVLAPQLEALLPRIRACLASLHGTRH-LGHVELVQAGSGTLMI-LRHTAPLSAAD 214 Query: 132 RECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPN 191 +E R H+ + L + + E L F Q N Sbjct: 215 KEKLERFS---HSEGLSLFLAPFSEILETVSG-----EAPWYDSHGLRLAFSPRDFIQVN 266 Query: 192 AGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN 250 +N M+ L D +L+L+CG GNF+L LA V+ VE VE R N Sbjct: 267 EVVNQQMVARALEWLDVRAEDRVLDLFCGMGNFTLPLATRAASVVGVEGVPALVEKGREN 326 Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310 N ++NV + +E + F + +DP R+G Sbjct: 327 AIRNGLHNVTFFHENLEE------------DVTKQPWAKNGFDKVLLDPARAGATGVMRH 374 Query: 311 MVQAYP-HILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364 +++ P I+Y+SCNP +L RD L + + + RLA+ D FP+T H+E VL R Sbjct: 375 IIKLKPIRIVYVSCNPATLARDSEALVNAGYEVTRLAMLDMFPHTGHLESMVLFER 430 >gi|193215656|ref|YP_001996855.1| RNA methyltransferase, TrmA family [Chloroherpeton thalassium ATCC 35110] gi|193089133|gb|ACF14408.1| RNA methyltransferase, TrmA family [Chloroherpeton thalassium ATCC 35110] Length = 475 Score = 233 bits (594), Expect = 4e-59, Method: Composition-based stats. Identities = 77/400 (19%), Positives = 144/400 (36%), Gaps = 58/400 (14%) Query: 9 QYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWH---------- 53 Y QL +K ++ +L + I +YR + +F + Sbjct: 89 SYAAQLRQKEKQVSDALLHIGGFKTFLMKPAIHAPHIFNYRNKVDFSFSNQRYLLPEEIG 148 Query: 54 --DGDDLYHIMFDQQTKER------MRIDYFMPGSLLIN---------ALMIEMMA--TI 94 +G+ F + ID S +N L ++ A T+ Sbjct: 149 VEEGELQKRTDFALGFHAPRRYDKAIDIDNCDIASPEMNTVLHIVKAFCLEKKLTAYSTV 208 Query: 95 RLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDA-----WRECAIRLRDALHARKYQI 149 E LR + + T + +VT + L +L ++ + Sbjct: 209 THEGFLRNLVIRSGENTGELMVNLVTSWHDTELMQELEYQLKEALQEKLTTFVNNISTKK 268 Query: 150 QLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGI 209 + + + + ++ E L + NSF Q N+ +++ + K Sbjct: 269 NTVAFGEEEFCVIGKGHITETLG----NYAFDISANSFFQTNSAQTLNLYQKTREFAKLS 324 Query: 210 QGDLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268 Q D++ +LYCG G+ S+ ++ +VL +E+ ++E A+ N N V N + K+ Sbjct: 325 QDDIVYDLYCGTGSISIFISDACQKVLGIELVDSAIEDAKKNAERNDVKNCAFRMLDLKD 384 Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPD 326 F + F + DPPR+G+ V M+ + I+Y+SCNP Sbjct: 385 FGKISPELEAFGL----------PDVVITDPPRAGMHPKAVQMLLRLSPKRIVYVSCNPA 434 Query: 327 SLCRDLSILSTT--HTIERLALFDQFPYTRHMECGVLLVR 364 SL RD + + + D FP+T H+E + + Sbjct: 435 SLARDGQLFCENGEYQLLEAQPVDMFPHTNHIESVAVFEK 474 >gi|222055874|ref|YP_002538236.1| RNA methyltransferase, TrmA family [Geobacter sp. FRC-32] gi|221565163|gb|ACM21135.1| RNA methyltransferase, TrmA family [Geobacter sp. FRC-32] Length = 437 Score = 233 bits (594), Expect = 4e-59, Method: Composition-based stats. Identities = 82/379 (21%), Positives = 145/379 (38%), Gaps = 34/379 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIF-----RSEPIHYRMRAEFHIWHDGD 56 +Y Q+ EK ++ + + EP YR R + + + G Sbjct: 76 GCNWQHVEYSSQIMEKTLIFADLLWRAARISPETVLPLLRAPEPYGYRSRVQLKVNYQGG 135 Query: 57 DLYHIMFDQQTKERMRI-DYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115 + ++ + + I + IN + + + P + QID + Sbjct: 136 KTRLGFYRPKSHQVVDIPGHCAITHKSINDTLESLRLLMEGCPD-PGNISQIDIARGDDE 194 Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVA- 174 V + + E ++ R+ I N T +++ R++ Sbjct: 195 SISVIVNHAGASVAEVSEYLLQHREISDLIGS--MFIRHKNSTTSIFGAEHLSYRISGNT 252 Query: 175 -----GRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVL 227 +TL + +++F+Q N N+ ++ V++ + G +L+LYCGNGNFS+ L Sbjct: 253 LPGGSEKTLFF--SKDAFSQINYQQNMQLI-RVVSDFAALTGKEKVLDLYCGNGNFSIPL 309 Query: 228 ARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDI 287 A V E +PS+ AR N N V N+ S + + RE Sbjct: 310 ADKAAHVTGFEGYEPSIADARKNAEWNGVTNISFHCSDSAAAVKKLAAARE--------- 360 Query: 288 HSYRFKTIFVDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDLSILST-THTIERLA 345 F + +DPPR+G + + I+Y+SC+P +L RDL IL + + Sbjct: 361 ---TFDVVVLDPPRNGAAEVMHHIQALNADRIIYVSCDPATLARDLGILKKNGFQVINIQ 417 Query: 346 LFDQFPYTRHMECGVLLVR 364 D FP T H+E LL + Sbjct: 418 GVDMFPQTYHLESVTLLTK 436 >gi|224539551|ref|ZP_03680090.1| hypothetical protein BACCELL_04456 [Bacteroides cellulosilyticus DSM 14838] gi|224518832|gb|EEF87937.1| hypothetical protein BACCELL_04456 [Bacteroides cellulosilyticus DSM 14838] Length = 476 Score = 233 bits (594), Expect = 4e-59, Method: Composition-based stats. Identities = 72/400 (18%), Positives = 139/400 (34%), Gaps = 58/400 (14%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFHIWHDG-------- 55 Y +Q+ K ++ + + + YR + E+ + Sbjct: 91 PYSEQIKYKQKQVTDNLTRIGKIELPEISPILGSEKTQFYRNKLEYTFSNKRWLTEEEIK 150 Query: 56 -DDLYHIMFDQQTK------ERMRIDYFMPGSLLINALMIEMMATIRLEPL----LRAK- 103 + +Y M + + I+ + N + + LR + Sbjct: 151 QNVVYEQMNAVGFHIPNAFDKVLAIEKCWLQDDISNRIRNTVRDYAYEHNYSFINLRTQE 210 Query: 104 --LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRL----RDALHARKYQIQLIGRANK 157 L + TS + + +V LI + +L D + +I Sbjct: 211 GMLRNMIIRTSTTGELMVILIAKIEEEVEELRLFKQLLQYVADTFPEITSLLYIINNKRN 270 Query: 158 TKICL-------DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ 210 I +D++ E + L ++ SF Q N+ + L + G+ Sbjct: 271 DTITDLDVYTFKGKDHIFEEM----EGLRFKIGPKSFYQTNSEQAYN-LYKIARNFAGLT 325 Query: 211 GD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268 G + +LY G G + +++ +V+ +E ++E A+ N N + N K+ Sbjct: 326 GKELVYDLYTGTGTIANFVSKQARQVIGIEYVPEAIEDAKVNAEINGIKNTLFFAGDMKD 385 Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPD 326 +D R I DPPR+G+ V ++ I+Y+SCNP Sbjct: 386 MLT-----------QDFINQYGRPDVIITDPPRAGMHQDVVDVILFAEPKRIVYVSCNPA 434 Query: 327 SLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRKP 366 + RDL +L + ++ + D FP+T H+E VLL + Sbjct: 435 TQARDLQLLDVKYKVKAIQPVDMFPHTHHVENVVLLELRN 474 >gi|210608457|ref|ZP_03287833.1| hypothetical protein CLONEX_00012 [Clostridium nexile DSM 1787] gi|210153033|gb|EEA84039.1| hypothetical protein CLONEX_00012 [Clostridium nexile DSM 1787] Length = 546 Score = 233 bits (594), Expect = 4e-59, Method: Composition-based stats. Identities = 82/391 (20%), Positives = 155/391 (39%), Gaps = 48/391 (12%) Query: 2 SGTLL-IDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHI---WH 53 G + YE+Q+ K D++++++ A + + + + YR + EF + Sbjct: 81 GGCMYQTMSYEEQMKMKGDQVKEILDAAILEDYEFEGVKASPKEFAYRNKMEFSFGDEYK 140 Query: 54 DGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLE-----------PLLRA 102 DG + T + + + +++ ++ + + LR Sbjct: 141 DGPLSLGLHKKGSTYDVLTAADCKLVHEDMTKILLCVLEYFKEKNVAYYKKMQHVGYLRH 200 Query: 103 KLFQIDYLTSQSDQAIVTLIYH----RLLDDAWRECAI--RLRDALHARKYQIQLIGRAN 156 L + T + +VT LL DA + ++ LH + + +++ Sbjct: 201 LLLRRGDQTGEILVNLVTTTQEEHDLSLLVDALLALQLEGKIVGILHILNDSLSDVVQSD 260 Query: 157 KTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG-DLLE 215 +T+I +D+ E+L + ++ SF QPN + + V I + + Sbjct: 261 ETRILYGQDFFYEKLL----DMDFKITPFSFFQPNTKGAEILYKTVRDYIGDIHNMTVFD 316 Query: 216 LYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275 L+ G G + VLA +V+ VEI + +VEAA+ N N ++N + + + Sbjct: 317 LFSGTGTIAQVLAPVAKQVIGVEIVEEAVEAAKENAEHNGLSNCRFIAGDVFKVL----- 371 Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLS 333 D + I +DPPR G+ + + I+YISC SL RDL Sbjct: 372 ----------DEIEEKPDVIVLDPPRDGIHPKALPKILDYGVDKIVYISCKVTSLARDLE 421 Query: 334 ILST-THTIERLALFDQFPYTRHMECGVLLV 363 ++ + +E+ DQF T H+E VLL Sbjct: 422 MIQARGYRVEKCTAVDQFCQTVHVETVVLLS 452 >gi|161615885|ref|YP_001589850.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|161365249|gb|ABX69017.1| hypothetical protein SPAB_03678 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] Length = 431 Score = 233 bits (594), Expect = 4e-59, Method: Composition-based stats. Identities = 83/356 (23%), Positives = 139/356 (39%), Gaps = 29/356 (8%) Query: 13 QLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ-QTKERM 71 Q K L ++M + I P YR RA + D + F + + + + Sbjct: 100 QQRSKSAALARLM---KHEVNDIIAGAPWGYRRRARLSLNCPPDKPLQMGFRKAGSSDIV 156 Query: 72 RIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAW 131 ++ + + + AL+ + A + R L ++ + + S ++ L + L A Sbjct: 157 NVEQCLVLAPQLAALLPRIRACLASLHGTRH-LGHVELVQAGSGTLMI-LRHTAPLSAAD 214 Query: 132 RECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPN 191 +E R H+ + L + + E L F Q N Sbjct: 215 KEKLERFS---HSEGLSLFLAPFSEILETVSG-----EAPWYDSHGLRLAFSPRDFIQVN 266 Query: 192 AGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN 250 +N M+ L D +L+L+CG GNF+L LA V+ VE VE R N Sbjct: 267 EAVNQQMVARALEWLDVRAEDRVLDLFCGMGNFTLPLATRAASVIGVEGVPALVEKGREN 326 Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310 N ++NV + +E + F + +DP R+G Sbjct: 327 AIRNGLHNVTFFHENLEE------------DVTKQPWAKNGFDKVLLDPARAGATGVMRH 374 Query: 311 MVQAYP-HILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364 +++ P I+Y+SCNP +L RD L + + + RLA+ D FP+T H+E VL R Sbjct: 375 IIKLKPIRIVYVSCNPATLARDSEALVNAGYEVTRLAMLDMFPHTGHLESMVLFER 430 >gi|192362323|ref|YP_001983036.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Cellvibrio japonicus Ueda107] gi|190688488|gb|ACE86166.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Cellvibrio japonicus Ueda107] Length = 485 Score = 233 bits (594), Expect = 4e-59, Method: Composition-based stats. Identities = 90/375 (24%), Positives = 157/375 (41%), Gaps = 30/375 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL----QIFRSEPIHYRMRAEFHIWHDGDD 57 L + E QL K + + + + RSE + YR RA +W++ D Sbjct: 123 GCQLQHLKPEAQLLMKQQVVLEQVHRWGGLTPKRVLPPLRSESLGYRSRARLGVWYEADS 182 Query: 58 LYHIMFDQQT-KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116 + F QQ K I+ +N L+ + ++ +A + I+ + +QS Sbjct: 183 SVTLGFRQQQRKTLTNIESCSVLLPALNRLIGPLRQWLQARVANKA-VTHIELVAAQSGP 241 Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGR 176 A++ + + L R+ L Q+ L N+ L+ VD L + Sbjct: 242 AVIVR-HTKPLVALQRQALAELAQR---ESCQVWLEPNGNQGLTDLEGSPVDPHLVLDVA 297 Query: 177 TLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVL 235 L FTQ N +N M++ L D +L+ +CG GNF+L +A RV+ Sbjct: 298 GLPLHFHPQDFTQVNPAVNGRMVQQALELLAPGTNDLVLDFFCGMGNFTLPMASRVARVI 357 Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295 +E+ +P V A+ N ++N+ EF +A + + RL+ + + I Sbjct: 358 GLEVVEPMVTRAQANATRLGLDNL--------EFLKADLSQMDSPRLRQLCSQA---SAI 406 Query: 296 FVDPPRSGLDDATVGMVQAYP-------HILYISCNPDSLCRDLSILST-THTIERLALF 347 +DPPR G + + I+Y+SCNP +L RD ++L+ + ++ L + Sbjct: 407 LLDPPRDGAKELVTQLRDLRRKGQLSAQRIVYVSCNPATLARDAALLAEAGYGLDALGVM 466 Query: 348 DQFPYTRHMECGVLL 362 D FP+T H+E L Sbjct: 467 DMFPHTSHVESMALF 481 >gi|331091394|ref|ZP_08340233.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lachnospiraceae bacterium 2_1_46FAA] gi|330404258|gb|EGG83805.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lachnospiraceae bacterium 2_1_46FAA] Length = 454 Score = 233 bits (594), Expect = 4e-59, Method: Composition-based stats. Identities = 80/395 (20%), Positives = 155/395 (39%), Gaps = 54/395 (13%) Query: 2 SGTLL-IDQYEQQLAEKVDRLRQMMLAFQVPN--LQIFRSEP--IHYRMRAEFHI---WH 53 G + Y++Q+ K ++++++ A + + + P YR + EF + Sbjct: 81 GGCMYQTMSYDEQIKMKSQQVKEILDAVVKDDYVFEGVKKSPKQFAYRNKMEFSFGDEYK 140 Query: 54 DGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEP-----------LLRA 102 DG + T + + + + ++ ++ + + LR Sbjct: 141 DGPLSLGLHKKGSTYDVLTVSDCKLVHEDMTKILNCVLTYFQEKGVGYYKKMQHIGYLRH 200 Query: 103 KLFQ---------IDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIG 153 L + I+ +T+ ++ + + RLL + ++ LH + + Sbjct: 201 LLLRRGDKTGEILINLVTTTQEEHDMQPLVDRLLA---LQLEGKIVGILHILNDSLSDVV 257 Query: 154 RANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG-D 212 +++KT + +DY E L + ++ SF QPN+ + + V I Sbjct: 258 QSDKTILLYGQDYFYEELL----GMEFKITPFSFFQPNSVGAEVLYDTVREYIGDIDNMT 313 Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + +L+ G G +LA V+ VEI + +VEAA+ N N ++N K + + Sbjct: 314 IYDLFSGTGTIGQILAPVAKEVIGVEIIEEAVEAAKENAEHNGLSNCKFIAGDVFKVL-- 371 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330 D + I +DPPR G+ + + Y I+YISC SL R Sbjct: 372 -------------DEIEEKPDVIVLDPPRDGIHPKALPKILDYQVDKIVYISCKVTSLAR 418 Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364 DL ++ + +E+ DQF T H+E LL + Sbjct: 419 DLEMIQERGYRVEKCVAVDQFANTAHVETVALLSK 453 >gi|303246914|ref|ZP_07333190.1| RNA methyltransferase, TrmA family [Desulfovibrio fructosovorans JJ] gi|302491621|gb|EFL51504.1| RNA methyltransferase, TrmA family [Desulfovibrio fructosovorans JJ] Length = 450 Score = 233 bits (594), Expect = 4e-59, Method: Composition-based stats. Identities = 81/390 (20%), Positives = 141/390 (36%), Gaps = 46/390 (11%) Query: 2 SGTLLID-QYEQQLAEKVDRLRQMMLAFQV-----PNLQIFRSEPIHYRMRAEFHIWHDG 55 G L D Y QL K ++ + + + E YR + EF G Sbjct: 80 GGCLHQDLDYAAQLFWKRQQVAETLSRLGGLRDVDVAPAVASPETYGYRNKMEFAFA--G 137 Query: 56 DDLYHIMFDQQTKERMRIDYFMP-----------GSLLINALMIEMMATIRLEPLLRAKL 104 + Q+ + I+ + A + + + R + Sbjct: 138 RLHLGLHERQRPGRVLDIEKCLLMDDRTGDILAFAREACAATGLAAYDPRTGKGVWRHLV 197 Query: 105 FQIDYLTSQSDQAIVTLIYHRLLD------DAWRECAIRLRDALHARKYQIQLIGRANKT 158 + T ++T R D +A E + +H+ + + + Sbjct: 198 VRRSLATGGRLVHLITGPSRRAGDAAHHFGEALLERFPDVSGFVHSVRRAPTTVAIGERQ 257 Query: 159 KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELY 217 L D+++ER+ + R ++F Q N + V AA L ++Y Sbjct: 258 VFALGTDHLEERIG----DVRLRISADAFAQTNTTAAEKLYAVVAQAAGTAPDRALWDVY 313 Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277 CG G +L LA F+ V VE K +V A+ + + N + Sbjct: 314 CGCGGIALALAPGFETVYGVEADKRAVADAQKSAKLSERENCVFKTGDAATVLA------ 367 Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL 335 D+ + + + +DPPR+G D T+ V A ++Y+SCNP +L RDL IL Sbjct: 368 --------DLAATKPAVVTLDPPRAGADGQTLAAVMDAAPEKLVYVSCNPATLARDLKIL 419 Query: 336 STTHTIERLALFDQFPYTRHMECGVLLVRK 365 S +T+ ++ D FP+T H+E L + Sbjct: 420 SDLYTLTQVTPVDLFPHTAHIEVVAALELR 449 >gi|330873515|gb|EGH07664.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas syringae pv. glycinea str. race 4] Length = 189 Score = 232 bits (593), Expect = 5e-59, Method: Composition-based stats. Identities = 101/189 (53%), Positives = 130/189 (68%) Query: 177 TLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLA 236 T YRQ E +FTQPN +N ML W A Q DLLELYCGNGNF+L LA +VLA Sbjct: 1 TFSYRQPEGAFTQPNGTVNGKMLNWAFDALGERQDDLLELYCGNGNFTLPLATRVRKVLA 60 Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296 EI+K SV AA N+ N V+NV +VR+S++E T+A+ R F RL +D+ SY F ++F Sbjct: 61 TEISKTSVNAALSNLDDNGVDNVTLVRLSAEELTEALNEVRPFRRLHGVDLKSYDFGSVF 120 Query: 297 VDPPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHM 356 VDPPR+G+D T + + + ILYISCNP++L +++ L TH +ER ALFDQFPYT HM Sbjct: 121 VDPPRAGMDPDTCELTRRFERILYISCNPETLAANIAQLHDTHRVERCALFDQFPYTHHM 180 Query: 357 ECGVLLVRK 365 E GVLLVR+ Sbjct: 181 ESGVLLVRR 189 >gi|200388031|ref|ZP_03214643.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|199605129|gb|EDZ03674.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Salmonella enterica subsp. enterica serovar Virchow str. SL491] Length = 431 Score = 232 bits (593), Expect = 5e-59, Method: Composition-based stats. Identities = 83/356 (23%), Positives = 138/356 (38%), Gaps = 29/356 (8%) Query: 13 QLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ-QTKERM 71 Q K L ++M + I P YR RA + D + F + + + + Sbjct: 100 QQRSKSAALARLM---KHEVNDIIAGAPWGYRRRARLSLNCPPDKPLQMGFRKAGSSDIV 156 Query: 72 RIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAW 131 ++ + + AL+ + A + R L ++ + + S ++ L + L A Sbjct: 157 NVEQCPVLAPQLAALLPRIRACLASLHGTRH-LGHVELVQAGSGTLMI-LRHTAPLSAAD 214 Query: 132 RECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPN 191 +E R H+ + L + + E L F Q N Sbjct: 215 KEKLERFS---HSEGLSLFLAPFSEILETVSG-----EAPWYDSHGLRLAFSPRDFIQIN 266 Query: 192 AGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN 250 +N M+ L D +L+L+CG GNF+L LA V+ VE VE R N Sbjct: 267 EAVNQQMVARALEWLDVRAEDRVLDLFCGMGNFTLPLATRAASVVGVEGVPALVEKGREN 326 Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310 N ++NV + +E + F + +DP R+G Sbjct: 327 AIRNGLHNVTFFHENLEE------------DVTKQPWAKNGFDKVLLDPARAGATGVMRH 374 Query: 311 MVQAYP-HILYISCNPDSLCRDLSILS-TTHTIERLALFDQFPYTRHMECGVLLVR 364 +++ P I+Y+SCNP +L RD L+ + + RLA+ D FP+T H+E VL R Sbjct: 375 IIKLKPIRIVYVSCNPATLARDSEALANAGYEVTRLAMLDMFPHTGHLESMVLFER 430 >gi|53803775|ref|YP_114333.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Methylococcus capsulatus str. Bath] gi|90126220|sp|Q606W5|RUMA_METCA RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|53757536|gb|AAU91827.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Methylococcus capsulatus str. Bath] Length = 443 Score = 232 bits (593), Expect = 5e-59, Method: Composition-based stats. Identities = 80/375 (21%), Positives = 137/375 (36%), Gaps = 30/375 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL----QIFRSEPIHYRMRAEFHIWH--DG 55 +L + Q+A K D L R YR RA + Sbjct: 87 GCSLQYLSEDAQIALKEDLLLDQFRRIGKVEPAAQFPPLRGPHWGYRSRARLGARYVAKK 146 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115 + + + + + + + I LR +L QI+ + Sbjct: 147 GRELVGFREHASAKIVDMTDCPVLHPALGERIQAFAELIEGL-SLRERLPQIEAAVGEER 205 Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDE-RLTVA 174 A+V R+L+D E RL + + + + + + + ++ Sbjct: 206 TALV----FRVLEDPTAEDFARLARFGKDQGLDVYIQREGRDSVAPVYPETAHDLSYSLP 261 Query: 175 GRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDR 233 + +R FTQ N IN M++ V+ A + +L+L+CG GNF+L LAR Sbjct: 262 EWEVTFRFGPLDFTQVNMAINRQMIDQVMQALDPQPEERVLDLFCGLGNFTLPLARRAGH 321 Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293 V VE +V A N A N + NV+ + + + Sbjct: 322 VTGVEGGAEAVARAIRNAADNGIGNVEFHVAD-------LSKPESCG-----SWAGREYH 369 Query: 294 TIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSIL--STTHTIERLALFDQ 349 + +DP RSG + + V + I+Y+SCNP +L RD IL + + + + D Sbjct: 370 KVLLDPSRSGALE-ILQCVPNWKAGRIVYVSCNPSTLARDAGILVHEYGYRLLKAGVMDM 428 Query: 350 FPYTRHMECGVLLVR 364 FP+T H+E + R Sbjct: 429 FPHTAHVESIAVFER 443 >gi|323699039|ref|ZP_08110951.1| RNA methyltransferase, TrmA family [Desulfovibrio sp. ND132] gi|323458971|gb|EGB14836.1| RNA methyltransferase, TrmA family [Desulfovibrio desulfuricans ND132] Length = 460 Score = 232 bits (593), Expect = 5e-59, Method: Composition-based stats. Identities = 82/396 (20%), Positives = 144/396 (36%), Gaps = 48/396 (12%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVP-----NLQIFRSEPIHYRMRAEFHIWHDGD 56 + Y +Q+A+K ++ + + +YR + EF D Sbjct: 81 GCAVQDLDYAEQVAQKAAQVENALRRIGGAADFVLDPPAPSPAVWNYRNKMEFAFEQGED 140 Query: 57 DLYHIM------FDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLL---------- 100 + D+ + I+ + ++ +R L Sbjct: 141 GPRLGLRATLPAGDKGLAPVLDIEECHLCASRDVDILRAARDFVRASGLSAYDPADNTGF 200 Query: 101 -RAKLFQIDYLTSQSDQAIVTLI------YHRLLDDAWRECAIRLRDALHARKYQIQLIG 153 R + + L ++ ++T L ++ + L +H+ + + L Sbjct: 201 WRHLVVRHTAL-NEIMVHLITAEAPDDYGQAEALGESLADRFPDLTSFVHSSRARRSLAA 259 Query: 154 RANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG-- 211 K L V E + RT+ Y N+F Q N + V G+ G Sbjct: 260 TGEKAVFRLGARTVTEEVAHGDRTVRYHLGPNAFFQTNTAGAGELFGTV-REFCGLTGVE 318 Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271 +L+LYCG G + LA RV+ VE+++ +V A + N + N + S Sbjct: 319 TVLDLYCGCGAIGIFLADQARRVVGVEVSEEAVSKAWASAKLNKLTNCEFTAAS------ 372 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLC 329 + L D + VDPPR+G+ ++T + A IL +SC+P +L Sbjct: 373 -LDSPAALKGLPKAD-------VLVVDPPRAGIHESTAQAILTLAPKKILAVSCDPTTLA 424 Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 RD+ S +T+ R D FP+T H+E LL RK Sbjct: 425 RDVKRFSEHYTLTRARAVDMFPHTHHIETVTLLERK 460 >gi|204928019|ref|ZP_03219219.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|204322341|gb|EDZ07538.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] Length = 431 Score = 232 bits (592), Expect = 6e-59, Method: Composition-based stats. Identities = 83/356 (23%), Positives = 138/356 (38%), Gaps = 29/356 (8%) Query: 13 QLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ-QTKERM 71 Q K L ++M + I P YR RA + D + F + + + + Sbjct: 100 QQRSKSAALARLM---KHEVNDIIAGAPWGYRRRARLSLNCPPDKPLQMGFRKAGSSDIV 156 Query: 72 RIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAW 131 ++ + + AL+ + A + R L ++ + + S ++ L + L A Sbjct: 157 NVEQCPVLAPQLAALLPRIRACLASLHGTRH-LGHVELVQAGSGTLMI-LRHTAPLSAAD 214 Query: 132 RECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPN 191 +E R H+ + L + + E L F Q N Sbjct: 215 KEKLERFS---HSEGLSLFLAPFSEILETVSG-----EAPWYDSHGLRLAFSPRDFIQVN 266 Query: 192 AGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN 250 +N M+ L D +L+L+CG GNF+L LA V+ VE VE R N Sbjct: 267 EVVNQQMVARALEWLDVRAEDRVLDLFCGMGNFTLPLATRAASVVGVEGVPALVEKGREN 326 Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310 N ++NV + +E + F + +DP R+G Sbjct: 327 AIRNGLHNVTFFHENLEE------------DVTKQPWAKNGFDKVLLDPARAGATGVMQH 374 Query: 311 MVQAYP-HILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364 +++ P I+Y+SCNP +L RD L + + + RLA+ D FP+T H+E VL R Sbjct: 375 IIKLKPIRIVYVSCNPATLARDSEALVNAGYEVTRLAMLDMFPHTGHLESMVLFER 430 >gi|325662109|ref|ZP_08150727.1| hypothetical protein HMPREF0490_01465 [Lachnospiraceae bacterium 4_1_37FAA] gi|325471558|gb|EGC74778.1| hypothetical protein HMPREF0490_01465 [Lachnospiraceae bacterium 4_1_37FAA] Length = 459 Score = 232 bits (592), Expect = 6e-59, Method: Composition-based stats. Identities = 81/394 (20%), Positives = 147/394 (37%), Gaps = 51/394 (12%) Query: 2 SGTLL-IDQYEQQLAEKVDRLRQMML----AFQVPNLQIFRSE-PIHYRMRAEFHIW--- 52 G + Y+ Q+ K ++++ +M + + S YR + EF Sbjct: 81 GGCMYQTMDYQAQVKMKAEQIQSIMDAAVDGYSYTFEGVKESPKEFAYRNKMEFSFGDEY 140 Query: 53 ---------HDGDDLYHIMFDQQTKERMRIDYFMPGSLLIN---ALMIEMMATIRLEPLL 100 H Y ++ K + D S +++ + ++ L Sbjct: 141 KDGPLSLGLHKKGSTYDVLTASDCK-LVHEDMTQILSCVLDYFKERGVSYYKKMQHIGYL 199 Query: 101 RAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRL------RDALHARKYQIQLIGR 154 R L + T + +VT E + L LH + + + Sbjct: 200 RHLLLRRGDTTGEILVNLVTTTQEEHDLAPLVEKLLALPVEGKIVGILHILNDSLSDVVQ 259 Query: 155 ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG-DL 213 +++TKI +DY E++ L ++ SF QPN+ + V I + Sbjct: 260 SDETKILYGQDYFYEKIM----GLEFKITPFSFFQPNSRGAEVLYSTVREYIGDIHDMTV 315 Query: 214 LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273 +L+ G G + VLA +V+ VEI + +VEAA+ N N ++N + + + Sbjct: 316 YDLFSGTGTIAQVLAPVAKQVIGVEIIEEAVEAAKENAERNGLHNCRFIAGDVFKVL--- 372 Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRD 331 D + I +DPPR G+ + + +I+YISC SL RD Sbjct: 373 ------------DEIEEKPDVIVLDPPRDGIHPKALPKILDYGVENIVYISCKATSLARD 420 Query: 332 LSILST-THTIERLALFDQFPYTRHMECGVLLVR 364 L ++ + + + DQF T H+E VL+ + Sbjct: 421 LEMIQARGYRVVKCTAVDQFCQTVHVETVVLMSK 454 >gi|296104454|ref|YP_003614600.1| 23S rRNA 5-methyluridine methyltransferase [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295058913|gb|ADF63651.1| 23S rRNA 5-methyluridine methyltransferase [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 432 Score = 232 bits (592), Expect = 6e-59, Method: Composition-based stats. Identities = 82/356 (23%), Positives = 144/356 (40%), Gaps = 30/356 (8%) Query: 13 QLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ--QTKER 70 Q K + L +++ I +P YR RA + + + M + + + Sbjct: 100 QQKSKSNALARLLR---HDVDDIIADQPWGYRRRARLSLSYQPKNERLEMGFRKAGSSDI 156 Query: 71 MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDA 130 + I + AL+ ++ A + +R L ++ + + + +V R Sbjct: 157 VDIRQCPILVPRLEALLPDVHACLSGLDSVRH-LGHVELVLANNGPLMVL----RHTAPL 211 Query: 131 WRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQP 190 ++ +L H+ + + L ++ L++ D A L F Q Sbjct: 212 SKKDREKLERFSHSHELALFLAPQSE----ILEQVTGDAP-WYASNGLRLTFSPRDFIQV 266 Query: 191 NAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249 N G+N M+E L +L+L+CG GNF+L LAR V+ VE V + Sbjct: 267 NDGVNQQMIETALTWLDVQPTDRVLDLFCGMGNFTLPLARKAASVVGVEGVDALVAKGQE 326 Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309 N N + NV + +E + F I +DP R+G Sbjct: 327 NAQQNGLQNVTFFHQNLEE------------DVTQQPWAKQGFDKILLDPARAGAPGVMQ 374 Query: 310 GMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHMECGVLLV 363 +++ P ++Y+SCNP +L RD ++LS + I+RLA+ D FP+T H+E VL Sbjct: 375 HIIKLAPKRVVYVSCNPATLARDSEALLSAGYQIQRLAMLDMFPHTGHLESMVLFE 430 >gi|67923770|ref|ZP_00517234.1| tRNA (uracil-5-)-methyltransferase/TrmA [Crocosphaera watsonii WH 8501] gi|67854397|gb|EAM49692.1| tRNA (uracil-5-)-methyltransferase/TrmA [Crocosphaera watsonii WH 8501] Length = 455 Score = 232 bits (592), Expect = 6e-59, Method: Composition-based stats. Identities = 74/379 (19%), Positives = 142/379 (37%), Gaps = 47/379 (12%) Query: 9 QYEQQLAEKVDRLRQMMLAFQ----VPNLQIFRSEP-IHYRMRAEFHI-WHDGDDLYHIM 62 QY QL K +++ Q + L I S + YR +A + + + Sbjct: 92 QY--QLKAKENQVIQALKRIGGFDNPSVLPILPSPDSLGYRNKATYPLKRSTTGTVQAGY 149 Query: 63 FDQQTKERMRIDYFMPGSLLINALMIEMMATIRL-------EPLLRAKLFQIDYLTSQ-S 114 + + T + + ++ +N ++ E+ I+ E KL + + + Sbjct: 150 YQRNTHQIINLNQCPIQDTRLNPILAEVKQDIQAQGWSIYNEKTGTGKLRHLGLRIGKKT 209 Query: 115 DQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKI-------CLDRDYV 167 + +TL+ ++E A KI + R ++ Sbjct: 210 GEIFLTLVSSSKKIPNFQEQAEIWLQRYPNLVGVSINYNPHQGNKIFGLETFNYVGRHHL 269 Query: 168 DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNFSLV 226 E L ++ ++F Q N +L +L + ++ L++ YCG G F+L Sbjct: 270 IEEFGQ----LHFQLSSDTFFQVNTEAAEILLSVLLEKLSLTVEKTLIDAYCGVGTFTLP 325 Query: 227 LARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDID 286 LA+ + + +E + S+ A N N ++N+K + + + Sbjct: 326 LAQKVAQAVGIENNQNSITQAENNAKINGIDNIKFYTGNVENILPFLN------------ 373 Query: 287 IHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILSTT--HTIE 342 + +DPPR G D + + ++ P I+YISC P +L RDL L + +E Sbjct: 374 ---IFPDIVVLDPPRKGCDRSVIDTLRKINPPLIIYISCQPSTLARDLKKLCQEDLYKVE 430 Query: 343 RLALFDQFPYTRHMECGVL 361 + D FP T H+E + Sbjct: 431 SIQPIDFFPQTPHVESMAV 449 >gi|168205921|ref|ZP_02631926.1| 23S rRNA -methyltransferase RumA [Clostridium perfringens E str. JGS1987] gi|170662572|gb|EDT15255.1| 23S rRNA -methyltransferase RumA [Clostridium perfringens E str. JGS1987] Length = 451 Score = 232 bits (592), Expect = 6e-59, Method: Composition-based stats. Identities = 80/395 (20%), Positives = 150/395 (37%), Gaps = 53/395 (13%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI--FRSEP--IHYRMRAEFHIWHD--- 54 + YE+QL KV++++ + +VP + + P YR + E+ + Sbjct: 79 GCSSQTIPYEKQLELKVEQVKDLFKEAEVPTGEFLGIETSPIQWEYRNKMEYTFGDEEKG 138 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGSLL---INALMIEMMAT--------IRLEPLLRAK 103 G+ + ++ + +D + I ++ + LR Sbjct: 139 GELTLGMHMKGKSFGIVNVDKCVLVDEDFRNILDTTVKYFREKGLPFYKIMPRTGYLRYL 198 Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAI---------RLRDALHARKYQIQLIGR 154 + + ++++ +V L+ +D E +L+ +H + Sbjct: 199 VVRKSV---KTEEILVNLVTTTQIDFDLTEFTEIIKGLNLKGKLKSIIHTESDALSEAVI 255 Query: 155 ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL 214 K I D++ E L L ++ SF Q N+ + V ++ Sbjct: 256 PEKVNILYGDDFITENLL----GLNFKISPFSFFQTNSLGAEKLYSIVRDFMGAADNKVV 311 Query: 215 -ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273 +LYCG G + A +V+ +E+ + + AA N N +NN + E + + Sbjct: 312 FDLYCGTGTIGQIAAGKASKVIGIELIEEAAMAANENAKLNGLNNCNFIAGDVAEVIKTV 371 Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRD 331 + + I +DPPRSG+ + V + P I+Y+SCNP +L D Sbjct: 372 K---------------DKPDIIILDPPRSGVHPKALDYVIKFNAPQIIYVSCNPKTLVTD 416 Query: 332 LSILSTT-HTIERLALFDQFPYTRHMECGVLLVRK 365 L +L + IE+ L D FP T H+E V L +K Sbjct: 417 LKVLEAKEYEIEKTLLMDMFPNTPHVETVVKLNKK 451 >gi|297171088|gb|ADI22100.1| SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [uncultured Planctomycetales bacterium HF0200_11L05] Length = 298 Score = 232 bits (592), Expect = 6e-59, Method: Composition-based stats. Identities = 104/301 (34%), Positives = 174/301 (57%), Gaps = 8/301 (2%) Query: 66 QTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHR 125 + +++ ++ IN L+ ++ + ++ KLFQ + S+S + IV+LIYH+ Sbjct: 3 EKNKKINVNELTICDAQINQLISQLKIKLLSSDEMKEKLFQTEIQVSRSGEGIVSLIYHK 62 Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIEN 185 LD W + A +L + A ++GR+ K K+ + +D+V E + + E Sbjct: 63 PLDANWIKKAKKLSSEIGA-----SIVGRSRKQKLVVGKDFVTETYDAHIKKIKVNLYEQ 117 Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 F+QPN I ML WV + +K + + EL+CG G F+++ + RVLA E ++PSV+ Sbjct: 118 CFSQPNPYICDEMLAWV-SKSKKLHHHVTELHCGVGTFTILXXXXYSRVLATENSRPSVK 176 Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD 305 A N+ N + NV+ RMS E +A+ ++REFNR+K I++ +R +F+DPPRSGLD Sbjct: 177 ALEKNMHINSIENVETARMSGLETLEALIKKREFNRMKHINLIDFRKDVLFLDPPRSGLD 236 Query: 306 DATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363 ++ +++ Y I+Y+SC SL +L L T + +++ ALFDQFPYT H+E GV+L Sbjct: 237 VDSINLIKQLKYKEIIYLSCGFKSLKSNLKELLTNYKVKKAALFDQFPYTDHIETGVILR 296 Query: 364 R 364 + Sbjct: 297 K 297 >gi|283768881|ref|ZP_06341792.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bulleidia extructa W1219] gi|283104667|gb|EFC06040.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bulleidia extructa W1219] Length = 386 Score = 232 bits (592), Expect = 7e-59, Method: Composition-based stats. Identities = 79/383 (20%), Positives = 148/383 (38%), Gaps = 39/383 (10%) Query: 2 SGTLLIDQ-YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60 G +++Q Y Q+ K L ++ + + P HYR + + ++ Sbjct: 10 GGCSMLEQPYANQIRWKQAVLERLFPK-ETVLPMLKDKNPDHYRHKIYATFGKNAQGIFL 68 Query: 61 IMFDQQTKERMRIDYFMPG-----------SLLINALMIEMMATIRLEPLLRAKLFQIDY 109 ++ + + L N + + R + LLR +I Sbjct: 69 GLYGYHNHRLVNSMDCLIQHKKGNEILRTLCELANDFHLSVYQEDRRKGLLRHVYLRI-- 126 Query: 110 LTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD---- 165 +S+ ++ ++ L+ ++ L + + I KT I L Sbjct: 127 -SSKDEKVMMVLVLGEKKFPGSKKLVKILLEKHPEIETVILNYNF-RKTSIVLGEQERVV 184 Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNFS 224 Y L L +R +SF Q N + + + A + +++ G G S Sbjct: 185 YGKGYLMDKIDGLSFRISSHSFYQVNPKQAYRLYQRAIELANLKKEMKVVDACSGTGTIS 244 Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284 L+LARH V+ +E+ +V A N N + NV+ ++ +E R Sbjct: 245 LLLARHVQSVIGIELNPQAVFDANENKKVNQIQNVQFLQGRVEEVIPRYR---------- 294 Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILSTTHTIE 342 + +F+DPPRSG+ + + P I+YISC+P++ RD+ IL + ++I Sbjct: 295 -----IQADVLFLDPPRSGMGPCFMTYLDQLKIPKIVYISCDPNTQARDIQILKSHYSIT 349 Query: 343 RLALFDQFPYTRHMECGVLLVRK 365 D FP T+++E ++L RK Sbjct: 350 VSQGVDMFPQTKNIENILVLERK 372 >gi|223986763|ref|ZP_03636748.1| hypothetical protein HOLDEFILI_04071 [Holdemania filiformis DSM 12042] gi|223961284|gb|EEF65811.1| hypothetical protein HOLDEFILI_04071 [Holdemania filiformis DSM 12042] Length = 484 Score = 232 bits (592), Expect = 7e-59, Method: Composition-based stats. Identities = 82/385 (21%), Positives = 152/385 (39%), Gaps = 33/385 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAF-----QVPNLQIFRSEPIHYRMRAEFHIWHDGD 56 L+I + E QL K + +++ ++ + I + YR + + I + Sbjct: 81 GCPLMILKPEAQLQVKRELVQEALIKYAGLSRDKVQPVIASPSGLGYRNQCKLPIREERG 140 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116 L + +F++ + M I + + + AL +++A R K + T Sbjct: 141 RLVNGLFEEGSNRVMPIAHCLIHDPDLEALRKQILALANQ---FRLKAYDPKKGTGLRTL 197 Query: 117 AIVTLIYHRL-----LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY----V 167 + +D+ + I A+ +Q I +T+ + Sbjct: 198 VLRGFEGQYQCVLVSGEDSLPKGFIEKLKAIEGMTCIMQNINPDKRTRQLFSNRWSLLAG 257 Query: 168 DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVL 227 ++RL V + SF Q N + M+ + + L+E Y G G SL+L Sbjct: 258 EDRLPVQFGDVRLSLSCASFFQLNRPQALQMMRMAASLIEPCD-TLVEAYSGVGGISLML 316 Query: 228 ARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDI 287 ++ +E +VE A+ N N NV+ V + + + + R Sbjct: 317 KEKAKTIIGIEFVPEAVENAKENARLNRAENVRFVCGDAAKEMKKIIRR----------- 365 Query: 288 HSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTTHTIERLA 345 + + VDPPR+GLD A + ++ I+YISCNP +L ++L L + ++ + Sbjct: 366 --TKIDAVVVDPPRTGLDGAMIESLRQCQPKQIVYISCNPATLGKNLKELRDLYEVKTVI 423 Query: 346 LFDQFPYTRHMECGVLLVRKPSGWH 370 FD FP T H+E VLL + + H Sbjct: 424 PFDMFPNTPHVETVVLLSKLKTKKH 448 >gi|120603103|ref|YP_967503.1| RNA methyltransferase [Desulfovibrio vulgaris DP4] gi|120563332|gb|ABM29076.1| 23S rRNA m(5)U-1939 methyltransferase [Desulfovibrio vulgaris DP4] Length = 468 Score = 232 bits (592), Expect = 7e-59, Method: Composition-based stats. Identities = 84/391 (21%), Positives = 144/391 (36%), Gaps = 41/391 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ---VPNLQIFRSEP--IHYRMRAEFHIWHDGD 56 T Y QLA K +R + PN+ P +R + EF DG Sbjct: 82 GCTWQNLPYPAQLAWKERFVRDSLQRIGRIEAPNVLPTLPSPLQQGFRNKMEFAFTTDGR 141 Query: 57 DLYH-IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL------LRAKLFQIDY 109 H + + E + + + ++ R L ++ Sbjct: 142 GALHLGLRRRGGHEVVDVTSCGLQTATTCRVVTTARDIARASGLPGWDDAAHRGFWRFLV 201 Query: 110 LT--SQSDQAIVTLI--YHRLLDDAWRECAIRLRDAL-------HARKYQIQLIGRANKT 158 + ++ Q +V I H + R LR A+ H+ + Q + + T Sbjct: 202 VREPARGGQCLVQCITAPHPEAEHVVRAFFTALRQAVPEVTGCVHSIRSQNSQVAYGDAT 261 Query: 159 KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLEL 216 + E+L + ++F Q N + V G+ G + +L Sbjct: 262 VFTEGEIVLTEKLGAIELDFGH----DTFLQTNTRATELLYGEV-ERMAGLSGREHVWDL 316 Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276 YCG G+ +L LA H + +E SVEAA+ N A + V + A+ R Sbjct: 317 YCGVGSITLWLAEHAATICGMEATPASVEAAQRNAQAAGCTHCDFVAGDVR----ALLRS 372 Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSI 334 R + ++ + DPPR+G+ + + A I+Y+SC+P ++ RD+ + Sbjct: 373 RSKGKAQEPI-----PDVVVTDPPRAGMHPDVIDALLQTAPARIVYVSCDPATMARDVGL 427 Query: 335 LSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 L +T+ D FP+T H+E VLL K Sbjct: 428 LMQRYTLHEARPVDLFPHTPHVETVVLLSNK 458 >gi|42519480|ref|NP_965410.1| hypothetical protein LJ1606 [Lactobacillus johnsonii NCC 533] gi|51316713|sp|Q74IG2|Y1606_LACJO RecName: Full=Uncharacterized RNA methyltransferase LJ_1606 gi|41583768|gb|AAS09376.1| hypothetical protein LJ_1606 [Lactobacillus johnsonii NCC 533] Length = 459 Score = 232 bits (592), Expect = 7e-59, Method: Composition-based stats. Identities = 63/387 (16%), Positives = 134/387 (34%), Gaps = 40/387 (10%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHDGDD 57 L Y +QL K + + + + + I +YR +A++ I + Sbjct: 88 LAHLSYPKQLEFKQHLILESLRKYHPRDYIKYKVKKTIPTPNAWNYRNKAQYQIEFNKGK 147 Query: 58 LYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLFQ 106 ++ ++ + + + LI+ L I + R ++ + Sbjct: 148 SKLGLYAPNSRRLIDLPDMPTQTKETQKVEREIKKLIDKLHIRIADFRRHTDGIKTIAVR 207 Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDAL---HARKYQIQLIGRANKTKICLD 163 T + ++T+ ++L + + NKT Sbjct: 208 QSNATGEIQVTLITIGKKIKDLKLLASHIMKLPNVVSVFQNETQWQNPQVWGNKTIKLFG 267 Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGN 222 + ++ E + ++ +F Q N + L L++ Y G G Sbjct: 268 KSHITEEILGK----KFKLSPRAFFQLNPEQTTTLYSEALKYLDLTPDQTLIDAYAGVGT 323 Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282 ++ + +V+ +E +V A+ N NHV N + ++ + ++ L Sbjct: 324 LGILASDQVRQVIGIESIPEAVIDAQENCRLNHVRNAEYIQGNVEKL------------L 371 Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLSILSTTHT 340 ++ + VDPPR+GL + + +Y+SCNP +L +DL +LS + Sbjct: 372 PELKNQGVPINALIVDPPRTGLSKKLIKTLLEVKPETFVYVSCNPATLAKDLVLLSDAYD 431 Query: 341 IERLALFDQFPYTRHMECGVLLVRKPS 367 + + D P T E LV + + Sbjct: 432 VRVIQPVDMMPQTPRWEGVTKLVLRKN 458 >gi|330012192|ref|ZP_08307325.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Klebsiella sp. MS 92-3] gi|328533894|gb|EGF60562.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Klebsiella sp. MS 92-3] Length = 434 Score = 232 bits (592), Expect = 7e-59, Method: Composition-based stats. Identities = 81/369 (21%), Positives = 134/369 (36%), Gaps = 30/369 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHI 61 Q K L ++M + P YR RA + + Sbjct: 89 GCQQQHASVPLQQQSKRAALGRLMKR---EVDDVIAGAPWGYRRRARLSLNYQPKTQQLQ 145 Query: 62 MFDQQT--KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119 M +Q K + + + AL+ + + LR L ++ + + + +V Sbjct: 146 MGFRQANAKAIVDVVQCPVLVPQLEALLPAVRECLSALSALRH-LGHVELVQADNGPLMV 204 Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179 + H A +L + L ++ + E L Sbjct: 205 --LRHTAALPAT--DREKLERFSQTHGLSLYLAPQSEILEHIHG-----EAPWYTSDGLR 255 Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVE 238 F Q N G+N M+ L D +L+L+CG GNF+L LA V+ VE Sbjct: 256 LVFSPRDFIQVNDGVNQQMVRTALEWLDLRPEDRVLDLFCGMGNFTLPLATRAAHVVGVE 315 Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298 VE R N A N ++NV + +E + F + + Sbjct: 316 GVPALVEKGRENAARNGLSNVTFFHENLEEDVTRQA------------WAKHGFDKVLLA 363 Query: 299 PPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHM 356 P R+G +++ P ++Y+SCNP +L RD +L + I+RLA+ D FP+T H+ Sbjct: 364 PARAGAPGVMPHIIKLAPRRVVYVSCNPATLARDSETLLQAGYQIQRLAMLDMFPHTGHL 423 Query: 357 ECGVLLVRK 365 E VL R+ Sbjct: 424 ESMVLFERR 432 >gi|323345673|ref|ZP_08085896.1| TrmA family RNA methyltransferase [Prevotella oralis ATCC 33269] gi|323093787|gb|EFZ36365.1| TrmA family RNA methyltransferase [Prevotella oralis ATCC 33269] Length = 475 Score = 232 bits (591), Expect = 7e-59, Method: Composition-based stats. Identities = 80/397 (20%), Positives = 142/397 (35%), Gaps = 55/397 (13%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPNLQIFRS-----EPIHYRMRAEFHI----WHDGDDLY 59 YE+QL K ++ + L R + YR + EF W +++ Sbjct: 91 PYEEQLKAKQQQVFDQLSRIGKVELPELRPILGSVKTSEYRNKLEFGFSNKRWLTKEEVA 150 Query: 60 HIMFDQQTK-----------ERMRIDYFMPGSLLINALMIEMMATIRLEPL------LRA 102 + I+ L N + E+ L + Sbjct: 151 SGTEFSDMNAVGFHITGAFDKIYPIEKCHLMDDLHNKIRNEIRDYALANDLSFFDIRQQT 210 Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTK--- 159 L + + + + + L+ +L R+ A L + R QI + + K Sbjct: 211 GLLRDMMIRNSNTGEWMLLLQFKLETLEDRQKAETLLQHIADRFPQITSLLYVDNHKGND 270 Query: 160 --------ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG 211 + D++ E + L ++ SF Q N H+ Sbjct: 271 TFGDLPVEVFKGNDHIFEEM----EGLRFKVGPKSFYQTNTEQAFHLYSVARELASLTGK 326 Query: 212 DLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270 +L+ +LY G G + +A +V+ +E ++E A+ N A N + N K+ Sbjct: 327 ELVYDLYTGTGTIANFVAGRAKKVIGIEYVPEAIEDAKVNSAVNRIENTLFFAGDMKDIL 386 Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSL 328 D + I DPPR+G+ + +++A P I+Y+SCNP + Sbjct: 387 TD-----------DFIREHGQPDVIITDPPRAGMHTDVIQTILRANPQRIVYVSCNPATQ 435 Query: 329 CRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 RDL+ L + ++ + D FP+T H+E VLL RK Sbjct: 436 ARDLAALDMQYKVDIVQPVDMFPHTPHVENVVLLTRK 472 >gi|283786672|ref|YP_003366537.1| 23s rRNA (uracil-5-)-methyltransferase [Citrobacter rodentium ICC168] gi|282950126|emb|CBG89762.1| 23s rRNA (uracil-5-)-methyltransferase [Citrobacter rodentium ICC168] Length = 432 Score = 232 bits (591), Expect = 7e-59, Method: Composition-based stats. Identities = 81/358 (22%), Positives = 141/358 (39%), Gaps = 30/358 (8%) Query: 13 QLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ--TKER 70 Q K L ++M + +I + P YR RA + + M ++ + + Sbjct: 100 QQRSKSAALSRLM---KCEVAEIVAAGPWGYRRRARLSLQYQSKTQQLQMGFRKAASSDI 156 Query: 71 MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDA 130 + I + + AL+ ++ A + +R L ++ + + S ++ +L Sbjct: 157 VDIRQCPILAPQLEALLPDVRACLSALQGVRH-LGHVELVQASSGTLMILRHTAQLSAG- 214 Query: 131 WRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQP 190 +L H+R+ + L + + E L F Q Sbjct: 215 ---DRQKLERFSHSRQLALYLAPTGEILERVSGQTPWYE-----SNGLRLHFSPRDFIQV 266 Query: 191 NAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249 N G+N M+ LA +L+L+CG GNF+L LA V+ VE VE + Sbjct: 267 NEGVNQQMVARALAWLEVQPTDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQE 326 Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309 N N ++NV + +E + F + +DP R+G Sbjct: 327 NARQNELHNVTFFHANLEE------------DVTRQPWAKSGFDKVLLDPARAGAAGVMQ 374 Query: 310 GMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 +++ P I+Y+SCNP +L RD +L + I+RLA+ D FP+T H+E L K Sbjct: 375 HIIKLQPRRIVYVSCNPATLARDSEQLLRAGYQIQRLAMLDMFPHTGHLESMALFEHK 432 >gi|110802049|ref|YP_699391.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium perfringens SM101] gi|110682550|gb|ABG85920.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium perfringens SM101] Length = 452 Score = 232 bits (591), Expect = 7e-59, Method: Composition-based stats. Identities = 79/394 (20%), Positives = 149/394 (37%), Gaps = 53/394 (13%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI--FRSEP--IHYRMRAEFHIWHD--- 54 + YE+QL KV++++ + +VP + + P YR + E+ + Sbjct: 79 GCSSQTIPYEKQLELKVEQVKDLFKEAEVPTGEFLGIETSPIQWEYRNKMEYTFGDEEKG 138 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGSLL---INALMIEMMAT--------IRLEPLLRAK 103 G+ + ++ + +D + I ++ + LR Sbjct: 139 GELTLGMHMKGKSFGIVNVDKCVLVDEDFRNILDTTVKYFREKGLPFYKIMPRTGYLRYL 198 Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAI---------RLRDALHARKYQIQLIGR 154 + + ++++ +V L+ +D E +L+ +H + Sbjct: 199 VVRKSV---KTEEILVNLVTTTQIDFDLTEFTELIKGLNLKGKLKSIIHTESDALSEAVI 255 Query: 155 ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL 214 K I D++ E L L ++ SF Q N+ + V ++ Sbjct: 256 PEKVNILYGDDFITENLL----GLNFKISPFSFFQTNSLGAEKLYSIVRDFMGAADNKVV 311 Query: 215 -ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273 +LYCG G + A +V+ +E+ + + AA N N +NN + E + + Sbjct: 312 FDLYCGTGTIGQIAAGKASKVIGIELIEEAAMAANENAKLNGLNNCNFIAGDVAEVIKTV 371 Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRD 331 + + I +DPPRSG+ + V + P I+Y+SCNP +L D Sbjct: 372 K---------------DKPDIIILDPPRSGVHPKALDYVIKFNAPQIIYVSCNPKTLVTD 416 Query: 332 LSILS-TTHTIERLALFDQFPYTRHMECGVLLVR 364 L +L + IE+ L D FP T H+E V L + Sbjct: 417 LKVLEAKGYEIEKTLLMDMFPNTPHVETVVKLNK 450 >gi|119358501|ref|YP_913145.1| RNA methyltransferase [Chlorobium phaeobacteroides DSM 266] gi|119355850|gb|ABL66721.1| 23S rRNA m(5)U-1939 methyltransferase [Chlorobium phaeobacteroides DSM 266] Length = 476 Score = 232 bits (591), Expect = 8e-59, Method: Composition-based stats. Identities = 87/408 (21%), Positives = 154/408 (37%), Gaps = 61/408 (14%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMM---LAFQVPNLQIFRSE--PIHYRMRAEFHIW---- 52 ++ YE Q K ++ M F+ P ++ P+HYR + EF Sbjct: 86 GCKMMHIAYEVQKELKRKKIIDAMVHIGGFENPQVKPVMGAVAPLHYRNKIEFSFSARRY 145 Query: 53 -----------HDGDDLYHIMFDQQTKERM-RIDYFMPGSLLINAL-----------MIE 89 D E++ +DY +N + + Sbjct: 146 LMPGELVLEKPLSSPDFALGFHAPGNFEKVLDVDYCYLAPSSMNEVLALTRSFCLERELS 205 Query: 90 MMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQI 149 +T LR + + + Q +V L+ + R A L A+ ++ I Sbjct: 206 AYSTRSNTGYLRNLVIRS---SEHRRQLMVNLVTSWHDSELMRSYAEVLSAAMPNQEMTI 262 Query: 150 QLIGRANKTKICLDRD--------YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEW 201 K + L + ++ ERL L + NSF Q N+ V + + Sbjct: 263 LNNVTTRKNTVALGEEEFLVAGDGFITERLG----KLDFNISANSFFQTNSAQTVLLYDE 318 Query: 202 VLA-ATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK 260 +L A I + +L+CG G +L L+ + +V+ +E+++ SV AR N A N +V Sbjct: 319 ILRVAGLDIGDTVYDLFCGTGTIALYLSDYCRQVIGLEVSESSVADARKNAALNQREHVL 378 Query: 261 IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHI 318 +++ + + D + + I DPPR+G+ + ++ A I Sbjct: 379 FMQVDLND----------HRAMVDALQRHDKPRVIVTDPPRAGMHPKALEVMVRIAPEKI 428 Query: 319 LYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVRK 365 +Y+SCNP SL RD S + + + L D FP+T H+E R+ Sbjct: 429 VYVSCNPASLARDGSEICKGGYRLTSLQPVDMFPHTSHIESVACFERE 476 >gi|148264199|ref|YP_001230905.1| RNA methyltransferase [Geobacter uraniireducens Rf4] gi|146397699|gb|ABQ26332.1| 23S rRNA m(5)U-1939 methyltransferase [Geobacter uraniireducens Rf4] Length = 439 Score = 232 bits (591), Expect = 8e-59, Method: Composition-based stats. Identities = 84/378 (22%), Positives = 144/378 (38%), Gaps = 34/378 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFHIWHDGD 56 Y Q+ EK + +++ I EP YR R + + Sbjct: 76 GCNWQHLAYSAQIKEKEEIFAELLWRAGRVERKRILPVIPAQEPYGYRSRIQLKVRFIDG 135 Query: 57 DLYHIMFDQQTKERMRI-DYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115 + F ++ + + I + IN ++ ++ ++ P + QID Sbjct: 136 KPHLGFFRTKSHDVIDIPEICAIAHADINRIISKLRQLLQHLPE-PDTVPQIDVARGDDG 194 Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVA- 174 A+V + Y + E + L I NK+ L + + E L+ Sbjct: 195 SALVIVHYTGAAHIGFSEFLLEQNKMLGFADGI--FIQGGNKSN--LGKVFGIESLSYQI 250 Query: 175 GRTLIYRQIE-------NSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLV 226 I SF+Q N N+H+++ V + + +L+LYCGNGNF++ Sbjct: 251 PENFIPGSSPKRLSFGKGSFSQVNYQQNLHLIQLVWNWAELTGKEKVLDLYCGNGNFTIP 310 Query: 227 LARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDID 286 LA ++ E S+ AR N +N+V N + + +K + Sbjct: 311 LAGFAQSMVGFEEFGQSINDARQNCESNNVTNAEFYCSDATL------------EVKKLA 358 Query: 287 IHSYRFKTIFVDPPRSGLDDATVGMVQAYPH-ILYISCNPDSLCRDLSILST-THTIERL 344 F + +DPPR G + + PH ILY+SC+P +L RD+ IL + + + Sbjct: 359 AAGESFDVVLLDPPRCGAAEVVSRIHAVSPHFILYVSCDPATLARDVDILKKSNYEVVKC 418 Query: 345 ALFDQFPYTRHMECGVLL 362 D FP T H+E LL Sbjct: 419 QPVDMFPQTYHIESVTLL 436 >gi|17231146|ref|NP_487694.1| hypothetical protein alr3654 [Nostoc sp. PCC 7120] gi|50401636|sp|Q8YR05|Y3654_ANASP RecName: Full=Uncharacterized RNA methyltransferase alr3654 gi|17132787|dbj|BAB75353.1| alr3654 [Nostoc sp. PCC 7120] Length = 460 Score = 232 bits (591), Expect = 8e-59, Method: Composition-based stats. Identities = 75/395 (18%), Positives = 146/395 (36%), Gaps = 47/395 (11%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDG- 55 YE QL K ++ Q + + + + + YR +A + + Sbjct: 84 GCQWQHIDYEYQLIAKRHQVIQALQRIGGFAQPPVDPVLVTASSLGYRNKATYPLDVSAT 143 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKL 104 + + + + + ++ +N L+ ++ I+ + +R Sbjct: 144 GQVQAGYYQKGSHHVVNLNQCPVQDPRLNPLLAQVKQDIQQRDWPIYDEKRHQGQIRHLG 203 Query: 105 FQIDYLTSQSDQAIVTLIYHRLLDD----AWRECAIRLRDALHARKYQIQLIGRANKTKI 160 +I T + +V + + W + +L R + +T+ Sbjct: 204 LRIGRRTGEILLTLVVKDGNLPGIEQQAQEWLQRYPQLVGVSLNRNPERTNAIFGRETRC 263 Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYC 218 Y+ E L ++ ++F Q +L V+ + +QG L++ YC Sbjct: 264 IAGVPYLREIFA----GLEFQVRPDTFFQVFTETAEALL-QVIESQLNLQGHETLIDAYC 318 Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278 G G +L L++ + + +E+ +V+ A N N +NNV+ + ++ M Sbjct: 319 GIGTLTLPLSKQVRQAIGLELQPEAVQQAIVNAQHNGINNVEFQVGAVEKLLPKM----- 373 Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILS 336 + +DPPR G D + + A I+Y+SC +L RDL +L Sbjct: 374 ----------GIIPDVVLLDPPRKGCDRIVIESLLASKPARIVYVSCKVATLARDLKLLC 423 Query: 337 --TTHTIERLALFDQFPYTRHMECGVLLVRKPSGW 369 T+TI+R+ D FP T H+E LV SG Sbjct: 424 TDGTYTIQRIQSADFFPQTSHVEVAAFLVLSQSGK 458 >gi|326798666|ref|YP_004316485.1| RNA methyltransferase, TrmA family [Sphingobacterium sp. 21] gi|326549430|gb|ADZ77815.1| RNA methyltransferase, TrmA family [Sphingobacterium sp. 21] Length = 476 Score = 232 bits (591), Expect = 8e-59, Method: Composition-based stats. Identities = 75/404 (18%), Positives = 148/404 (36%), Gaps = 51/404 (12%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN----LQIFRSEPI-HYRMRAEFHIWHD-- 54 Y QL K + + + +I S +YR + E+ + Sbjct: 85 GCKWQHMDYRAQLVYKQKSVDNALSRIGKIDTSSMEEILPSAHTVYYRNKLEYTFSNKRW 144 Query: 55 ------GDDLYHIMFDQQTKERMR------IDYFMPGSLLINALMIEMMATIRLEPL--- 99 H M +R I++ NA+ E+ + + Sbjct: 145 LTTEDIASGKEHEMSALGFHVPLRFDKILGIEHCYLQKDPSNAIRNELKQLTIEKGISYY 204 Query: 100 -LRAK---LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRA 155 LR L + TS + +V +++ + + L++ +I + Sbjct: 205 DLRNHEGALRNLMIRTSTTGDLMVVVVFAYPTQEQIVQVMEFLKERFPEISSLQYIINQK 264 Query: 156 N-----KTKICL--DRDYVDERLTVAGRT--LIYRQIENSFTQPNAGINVHMLEWVLAAT 206 +I +D++ E +++ R+ L ++ SF Q N+ L + Sbjct: 265 KNDTIFDQEIITYAGKDHIFEEMSLPNRSVRLRFKIGAKSFYQTNSEQAYE-LYRITKEF 323 Query: 207 KGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRM 264 ++G + +LY G G + +A +V+ +E ++E A+ N + N + N Sbjct: 324 ANLKGHELVYDLYTGAGTIANFVALDVKQVIGIEYVPSAIEDAKLNSSINGIENTLFFAG 383 Query: 265 SSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYIS 322 K+ + + I DPPR+G+ + + P I+Y+S Sbjct: 384 DMKDVLT-----------PEFTATHGKPDLIITDPPRAGMHPDVIARLLELEAPRIVYVS 432 Query: 323 CNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRKP 366 CN + RDL++L+ + ++R+ D FP+T+H+E VLL K Sbjct: 433 CNAATQARDLALLNEKYLVKRIKPVDMFPHTQHVENVVLLELKK 476 >gi|212711299|ref|ZP_03319427.1| hypothetical protein PROVALCAL_02371 [Providencia alcalifaciens DSM 30120] gi|212686028|gb|EEB45556.1| hypothetical protein PROVALCAL_02371 [Providencia alcalifaciens DSM 30120] Length = 443 Score = 232 bits (591), Expect = 9e-59, Method: Composition-based stats. Identities = 85/362 (23%), Positives = 144/362 (39%), Gaps = 28/362 (7%) Query: 13 QLAEKVDRLRQMMLA---FQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQT-- 67 Q K L+ +M +P + + + YR RA + + + +M +QT Sbjct: 100 QRESKAQALQHLMKRETGVMLPAISVIGGKEYGYRRRARLGLQYQNKSNHLMMGFRQTQT 159 Query: 68 KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLL 127 + I+ ++ L+ + + + +KL ++ + + I+ R L Sbjct: 160 NTLVDINSCPVLHTELDVLLAPLSTCLNQL-SIASKLGHVELIHGDNGNLILL----RHL 214 Query: 128 DDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSF 187 RL + + I L G N L D VAG L + +F Sbjct: 215 APVDLSDRKRLLEFAQSHGVTIWLAGD-NGQLQTLQADATLPEYQVAGEILQF--SPANF 271 Query: 188 TQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246 Q N IN M+ +A D +L+L+CG GNF+L +AR V+ VE + V Sbjct: 272 IQVNGEINQQMVAQAIAWLDLSPEDRVLDLFCGMGNFTLPIARLAKMVVGVEGVENLVTQ 331 Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306 A+ N N + N + +E ++ F + +DP R+G Sbjct: 332 AKNNAQRNSIENAAFYNENLEE------------QIHTQPWAQEGFNKVLLDPARAGAAG 379 Query: 307 ATVGMVQAYP-HILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 +++ P I+Y+SCNP +L RD +L + + +L + D FP T H+E L VR Sbjct: 380 VMEHLIKLMPEKIVYVSCNPTTLARDSKVLLEGGYQLSQLRMLDMFPQTSHLESMALFVR 439 Query: 365 KP 366 P Sbjct: 440 SP 441 >gi|238754498|ref|ZP_04615853.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Yersinia ruckeri ATCC 29473] gi|238707327|gb|EEP99689.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Yersinia ruckeri ATCC 29473] Length = 419 Score = 232 bits (591), Expect = 9e-59, Method: Composition-based stats. Identities = 79/351 (22%), Positives = 135/351 (38%), Gaps = 27/351 (7%) Query: 19 DRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ--TKERMRIDYF 76 RL I YR RA + + +M +Q + + + I+ Sbjct: 91 QRLIARETGVAPEAESIICGPEYGYRRRARLGLCYQSKQHRLVMGFRQVASHDLVAINQC 150 Query: 77 MPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAI 136 + L+ + + P ++ +L ++ + + + +V R LD+ Sbjct: 151 PVLRPELECLLAPLYRCLSALPSVK-RLGHVELVLADNGPLLVL----RHLDNLKSTDRA 205 Query: 137 RLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINV 196 L I L N L+R DE L F Q N +N Sbjct: 206 ALLAFSLQENVAIYLAPDENH----LERRVGDEPY-YQIDGLRLAFNPRDFIQVNPTVNQ 260 Query: 197 HMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH 255 M+ L +L+L+CG GNF+L LARH +V+ +E V +YN N Sbjct: 261 KMVAQALEWLDVHPDERVLDLFCGMGNFTLPLARHARQVVGIEGVATLVANGQYNAQINS 320 Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY 315 ++NV + +E + + F I +DP R+G + +V+ Sbjct: 321 LSNVSFFHENLEE------------DIDKQPWAAQGFDKILLDPARAGAAGVMLHIVKLA 368 Query: 316 P-HILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 P ++Y+SCNP +L RD +L + + R+ + D FP+T H+E L +R Sbjct: 369 PKRVVYVSCNPTTLARDSHVLLDAGYRLARVRMLDMFPHTGHLESMALFIR 419 >gi|281425818|ref|ZP_06256731.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella oris F0302] gi|281400079|gb|EFB30910.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella oris F0302] Length = 479 Score = 232 bits (591), Expect = 9e-59, Method: Composition-based stats. Identities = 77/405 (19%), Positives = 141/405 (34%), Gaps = 64/405 (15%) Query: 9 QYEQQLAEKVDRLRQMML---AFQVPNLQIFRSE--PIHYRMRAEFHI----WHDGDDLY 59 YE+QL K ++ + +P YR + EF W+ D++ Sbjct: 91 PYEEQLKAKQQQVYDQLTRIGKIALPEFNPIMGSVKTKEYRNKLEFGCANKRWYTKDEIA 150 Query: 60 HIMFDQQTKE------------------RMRIDYFMPGSLLINALMIEMMATIRLEPL-- 99 + ++ E I+ L N + E+ + + L Sbjct: 151 AMPPREEGTEGNLNESAIGFHITGAFDKIYPIEKCWLMDDLHNQIRNEINRYAKEQDLAF 210 Query: 100 -----LRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGR 154 L + S + + ++ + +H + E A+ L + QI + Sbjct: 211 YDIRAQHGLLRDLMMRNSNTGEFMLLVQFHYD-KEGDEEKAMALLQHIADAFPQITSLIY 269 Query: 155 ANKTK-----------ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL 203 + K D++ E + L ++ SF Q N H+ Sbjct: 270 VDNQKGNDTFGDLELTTFKGTDFIYETM----EDLKFKVGPKSFYQTNTEQAYHLYSVAR 325 Query: 204 AATKGIQGDLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262 A +L+ +LY G G + +A +V+ +E ++E A+ N N ++N Sbjct: 326 AFAALTGKELVYDLYTGTGTIANFVAHQAKQVIGIEYVPEAIEDAKENSKVNGIDNTLFY 385 Query: 263 RMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILY 320 K D R I DPPR+G+ V ++ A ++Y Sbjct: 386 AGDMKNILTD-----------DFIHEHGRPDVIITDPPRAGMHPDVVQVILNAAPKRVVY 434 Query: 321 ISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 +SCNP + RDL ++ + + + D FP+T H+E VL R+ Sbjct: 435 VSCNPATQARDLQLMDADYKVTAVQPVDMFPHTPHVENVVLQERR 479 >gi|268318102|ref|YP_003291821.1| RNA methyltransferase, TrmA family [Rhodothermus marinus DSM 4252] gi|262335636|gb|ACY49433.1| RNA methyltransferase, TrmA family [Rhodothermus marinus DSM 4252] Length = 466 Score = 231 bits (590), Expect = 1e-58, Method: Composition-based stats. Identities = 82/392 (20%), Positives = 136/392 (34%), Gaps = 53/392 (13%) Query: 9 QYEQQLAEKVDRLRQMM---LAFQVPNLQIFRSEP--IHYRMRAEFHIWHDG-------- 55 +YE QL K + + + F+ ++ P YR + EF D Sbjct: 87 RYEAQLEAKRQSVYEALVHHGGFEDVEVRPTLPSPRLYGYRNKMEFSFSADRWLTPEEIA 146 Query: 56 -DDLYHIMFDQQTK------ERMRIDYF----MPGSLLINALM-------IEMMATIRLE 97 F + + ++ L+N L E R E Sbjct: 147 SGRPLDRHFAVGLHVPGNFYKVIDLEECHLPEPITVRLLNELRAFFKAKGWEPWDIRRHE 206 Query: 98 PLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANK 157 LR + + +++ + +V L+ R + E L++ + I + Sbjct: 207 GYLRHLVIRTG---TRTGEVMVNLVTSRYDEARMAELGAFLQEQFPEVTTLVNTIN-SRP 262 Query: 158 TKICLDR----DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL 213 ++ + + + ++F Q N + E DL Sbjct: 263 AQVSYGEATYTIFGPGVIHDCIGPFRFEIAPDAFFQTNTEQAERLYEVARELAALRPDDL 322 Query: 214 L-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + +LYCG G S+ +A H V+ VE+ +VE AR N AAN + N V E Sbjct: 323 VYDLYCGTGTISIFIAPHVRHVVGVELVASAVENARANAAANGITNCTFVAGDLLEVLT- 381 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCR 330 R + VDPPR+G+ V + +Y+SCNP + R Sbjct: 382 ----------PAFVRTHGRPDVVIVDPPRAGMHPKVVRRIGQLRPERFVYVSCNPQTQAR 431 Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLL 362 DL +L + IE + D FP+T H+E V L Sbjct: 432 DLKLLRDLYRIEAVQPVDLFPHTDHVESVVAL 463 >gi|149910150|ref|ZP_01898796.1| RNA methyltransferase, TrmA family [Moritella sp. PE36] gi|149806736|gb|EDM66700.1| RNA methyltransferase, TrmA family [Moritella sp. PE36] Length = 444 Score = 231 bits (590), Expect = 1e-58, Method: Composition-based stats. Identities = 85/373 (22%), Positives = 144/373 (38%), Gaps = 29/373 (7%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFR----SEPIHYRMRAEFHIWHDGDD 57 +L I E Q K L ++ F + F S+P YR A + D Sbjct: 90 GCSLQILDSEVQADYKQTALFSLLQHFSKNDDINFAEPILSQPWQYRRTARLSVMFDRKA 149 Query: 58 LY--HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115 ++ +K + I+ ++ L+ + + +R L I+ + S Sbjct: 150 KQLVFGFRERNSKSLVAINECPVLEPALSVLIQPLRQLLATL-TVRRDLGHIELFSVDSG 208 Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKT-KICLDRDYVDERLTVA 174 + R+L + L+ + I L + K+ D +L Sbjct: 209 VICL----FRILKPLKDKDQDLLQAFASEHQLSIYLQPEPDSVVKLTPDIPAAWYQLADG 264 Query: 175 GRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDR 233 L + +F Q N +N M++ + + D +L+L+CG GNFSL LAR Sbjct: 265 EFKLSF--TPGNFIQVNPVVNNQMVKQAIDWLELTPEDRVLDLFCGGGNFSLPLARLCHS 322 Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293 V+ VE V A+ N AN+V N + + +F++L F Sbjct: 323 VVGVEGVDGMVRQAQANAIANNVTNAQFYQADLSS---------DFSKLP---WAKTSFD 370 Query: 294 TIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFP 351 + +DP R+G + + + I+Y+SCNP +L RD +L + + RL + D FP Sbjct: 371 KVLLDPARAGAAETVQYLHKLKVKRIVYVSCNPATLARDSKLLMEKHYKLTRLGMIDMFP 430 Query: 352 YTRHMECGVLLVR 364 T H+E L R Sbjct: 431 QTGHVESMALFER 443 >gi|16761736|ref|NP_457353.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29143220|ref|NP_806562.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213163047|ref|ZP_03348757.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213424910|ref|ZP_03357660.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213581488|ref|ZP_03363314.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213648277|ref|ZP_03378330.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|289829826|ref|ZP_06547341.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|20140067|sp|Q8Z446|RUMA_SALTI RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|25322739|pir||AH0860 probable RNA methyltransferase (EC 2.1.1.-) [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16504037|emb|CAD06071.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhi] gi|29138853|gb|AAO70422.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 431 Score = 231 bits (590), Expect = 1e-58, Method: Composition-based stats. Identities = 83/356 (23%), Positives = 141/356 (39%), Gaps = 29/356 (8%) Query: 13 QLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ-QTKERM 71 Q K L ++M +V ++ S YR RA + D + F + + + + Sbjct: 100 QQRSKSAALARLM-KHEVNDIIAGAS--WGYRRRARLSLNCPPDKPLQMGFRKAGSSDIV 156 Query: 72 RIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAW 131 ++ + + AL+ + A + R L ++ + + S ++ L + L A Sbjct: 157 NVEQCPVLAPQLEALLPRIRACLASLHGTRH-LGHVELVQAGSGTLMI-LRHTAPLSAAD 214 Query: 132 RECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPN 191 +E R H+ + L + + E L F Q N Sbjct: 215 KEKLERFS---HSEGLSLFLAPFSEILETVSG-----EAPWYDSHGLRLTFSPRDFIQVN 266 Query: 192 AGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN 250 +N M+ L D +L+L+CG GNF+L LA V+ VE + VE R N Sbjct: 267 EAVNQQMVARALEWLDVRAEDRVLDLFCGMGNFTLPLATRAASVVGVEGVQALVEKGREN 326 Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310 N ++NV + +E + F + +DP R+G Sbjct: 327 AIRNGLHNVTFFHENLEE------------DVTKQPWAKNGFDKVLLDPARAGATGVMRH 374 Query: 311 MVQAYP-HILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364 +++ P I+Y+SCNP +L RD L + + + RLA+ D FP+T H+E VL R Sbjct: 375 IIKLKPIRIVYVSCNPATLARDSEALVNAGYEVTRLAMLDMFPHTGHLESMVLFER 430 >gi|146312878|ref|YP_001177952.1| 23S rRNA 5-methyluridine methyltransferase [Enterobacter sp. 638] gi|226725379|sp|A4WDX1|RUMA_ENT38 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|145319754|gb|ABP61901.1| 23S rRNA m(5)U-1939 methyltransferase [Enterobacter sp. 638] Length = 431 Score = 231 bits (590), Expect = 1e-58, Method: Composition-based stats. Identities = 78/335 (23%), Positives = 138/335 (41%), Gaps = 27/335 (8%) Query: 34 QIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ--TKERMRIDYFMPGSLLINALMIEMM 91 +I EP YR RA + ++ M ++ + + + + + AL+ + Sbjct: 118 EIISGEPWGYRRRARLSLSYEPKTQKLAMGFRKAASSDIVDVKQCPVLVPHLEALLPHLR 177 Query: 92 ATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQL 151 + RA L ++ + + + +V L + L RE R H+ + + L Sbjct: 178 NCLSDLQGARA-LGHVELVLADNGPLMV-LRHTAPLSAPDREKLERFS---HSHELTLFL 232 Query: 152 IGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG 211 ++ + D L F Q N G+N M+ + Sbjct: 233 APQSEILERVSGDDP-----WYLSDGLRLTFSPRDFIQVNDGVNQQMVAKAIEWLDVQPD 287 Query: 212 D-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270 D +L+L+CG GNF+L LA+ V+ VE VE + N N ++NV + +E Sbjct: 288 DRVLDLFCGMGNFTLPLAQRAASVVGVEGVNALVEKGQQNAHHNALDNVTFFHENLEE-- 345 Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP-HILYISCNPDSLC 329 + + F + +DP R+G +++ P ++Y+SCNP +L Sbjct: 346 ----------DVTQQPWAQHGFDKVLLDPARAGAPGVMQHIIKLAPKRVVYVSCNPATLA 395 Query: 330 RDL-SILSTTHTIERLALFDQFPYTRHMECGVLLV 363 RD ++LS + I+RLA+ D FP+T H+E VL Sbjct: 396 RDSEALLSAGYQIQRLAMLDMFPHTGHLESMVLFQ 430 >gi|269140060|ref|YP_003296761.1| 23S rRNA 5-methyluridine methyltransferase [Edwardsiella tarda EIB202] gi|267985721|gb|ACY85550.1| 23S rRNA 5-methyluridine methyltransferase [Edwardsiella tarda EIB202] gi|304559888|gb|ADM42552.1| 23S rRNA (Uracil-5-) -methyltransferase RumA [Edwardsiella tarda FL6-60] Length = 420 Score = 231 bits (590), Expect = 1e-58, Method: Composition-based stats. Identities = 82/358 (22%), Positives = 139/358 (38%), Gaps = 30/358 (8%) Query: 13 QLAEKVDRLRQMMLAFQVPN--LQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ--TK 68 Q K L+++M Q+ EP YR RA F + + ++ +Q + Sbjct: 82 QQQSKSQALQRLMARETGVEIAPQVIAGEPYGYRRRARFGLQFNAKTQRVVLGFRQAASN 141 Query: 69 ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLD 128 + + + + + AL++ + + R +L ++ + + +V R LD Sbjct: 142 DLVALKACPVLAPALEALLLPLGECLSALRA-RRRLGHLELALADNGPLMVL----RHLD 196 Query: 129 DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFT 188 L R + L ++ + Y + F Sbjct: 197 PLALSDREALSAFARQRGLSLYLSDGGAPQRLLGEAPY------YQIDGIRLDFNPQDFI 250 Query: 189 QPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA 247 Q NA +N M+E LA +L+L+CG GNF+L LAR RV+ VE V A Sbjct: 251 QVNAAVNAQMVEQALAWLDVRADERVLDLFCGMGNFTLPLARRAQRVVGVEGVPELVATA 310 Query: 248 RYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307 + N N ++NV+ + +E + F I +DP R+G Sbjct: 311 QNNARNNGLSNVEFFHQNLEEDVTRQA------------WAAQGFDKILLDPARAGAPGV 358 Query: 308 TVGMVQAYP-HILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVLLV 363 +V P ++Y+SCNP +L RD +L + + RL + D FP+T H+E L Sbjct: 359 MQHIVCLAPRRVVYVSCNPTTLARDSKTLLQGGYRLTRLCMLDMFPHTGHLESMALFE 416 >gi|170727692|ref|YP_001761718.1| 23S rRNA 5-methyluridine methyltransferase [Shewanella woodyi ATCC 51908] gi|226725394|sp|B1KPU0|RUMA_SHEWM RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|169813039|gb|ACA87623.1| RNA methyltransferase, TrmA family [Shewanella woodyi ATCC 51908] Length = 443 Score = 231 bits (590), Expect = 1e-58, Method: Composition-based stats. Identities = 80/371 (21%), Positives = 149/371 (40%), Gaps = 29/371 (7%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRS----EPIHYRMRAEFH-IWHDGD 56 L E+Q K L +M + E HYR RA +H Sbjct: 91 GCDLQHLSLEKQRLHKESALVSLMAKLSHTEAEALVPAIIGEQWHYRRRARLATFYHQET 150 Query: 57 DLYHIMFDQQT-KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115 + F Q+ KE + I + ++ L+ + + RA L ++ + + Sbjct: 151 KRTTLGFRAQSSKEVIDISSCPVLAKSLSELISPLSKLLNQLASRRA-LGHVELIDVDNG 209 Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175 Q +V R + + +L A+++++ LI + N+ ++ + + + Sbjct: 210 QFVVV----RATKELSDKDKEKLLSF--AQEHKVNLIVQGNEGELLVIKGPKELPFYTLN 263 Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRV 234 + +F Q N IN M++ + +L+L+CG GNFSL LA+ V Sbjct: 264 SDIKLSFTPGNFVQVNGEINRAMVDQAVQWLDVKADERVLDLFCGVGNFSLPLAKSGAEV 323 Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294 + VE V AR N + +++V + + + +E ++ Sbjct: 324 IGVEGVPEMVAQARINAKQSDLSDVTFFH---TDLSADLSKEPWLGKV----------DK 370 Query: 295 IFVDPPRSGLDDATVGMVQAYPH-ILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPY 352 + +DP R+G ++ + + P I+Y+SC+P SL RD +L + +++L L D FP Sbjct: 371 LLLDPARAGAFESLQWLKKMKPKSIVYVSCDPSSLARDSEPLLKHGYKLKKLGLVDMFPQ 430 Query: 353 TRHMECGVLLV 363 T H+E L Sbjct: 431 THHIEAMALFE 441 >gi|305666421|ref|YP_003862708.1| putative RNA methyltransferase [Maribacter sp. HTCC2170] gi|88708684|gb|EAR00919.1| putative RNA methyltransferase [Maribacter sp. HTCC2170] Length = 469 Score = 231 bits (590), Expect = 1e-58, Method: Composition-based stats. Identities = 74/401 (18%), Positives = 140/401 (34%), Gaps = 54/401 (13%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ---VPNLQ--IFRSEPIHYRMRAEFHI----W 52 Y QL K + + +P L+ + E YR + EF W Sbjct: 84 GCKWQHMDYGHQLFYKQKEVENNLRRIGHLDLPELEPILGSKEQYFYRNKMEFSFSDSRW 143 Query: 53 HDGDDLYHIMFDQQTK-----------ERMRIDYFMPGSLLINALMIEMMATIRLE---- 97 D++ + ++ + + I + N + + + Sbjct: 144 LTLDEIQSDVEIKEKNALGFHIPGMWDKILDIKKCHLQADPSNEIRLAVKDFAIKNEITF 203 Query: 98 --PLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRA 155 P + + + + + S I+ LI RE + ++ +Q + Sbjct: 204 FNPRNQYGMLRTLMIRTASTGEIMVLIQFYEDSKEKRELLLNHLAKTFSQITSLQYVINQ 263 Query: 156 NKTKICL--------DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATK 207 + RD++ E + L ++ SF Q N+ L V Sbjct: 264 KQNDTIYDQEIVCFAGRDHIIEEM----EGLQFKINAKSFYQTNSEQAYE-LYKVARDFA 318 Query: 208 GIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265 GI G+ + +LY G G + +++ +V+ +E ++E A+ N A N ++NV Sbjct: 319 GITGNELVYDLYTGTGTIAQFVSKKAKKVIGIESVPEAIEDAKANAANNKIDNVDFFVGD 378 Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISC 323 K +D I DPPR G+ V + ++Y+SC Sbjct: 379 MKNVFN-----------EDFINAHGSPDIIITDPPRDGMHKDVVQQLLNIGAKKVVYVSC 427 Query: 324 NPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 N + RDL+++ + + ++ D FP T H+E VLL + Sbjct: 428 NSATQARDLALMKHMYKVSKVQAVDMFPQTHHVENVVLLEK 468 >gi|237729748|ref|ZP_04560229.1| 23S rRNA 5-methyluridine methyltransferase [Citrobacter sp. 30_2] gi|226908354|gb|EEH94272.1| 23S rRNA 5-methyluridine methyltransferase [Citrobacter sp. 30_2] Length = 432 Score = 231 bits (590), Expect = 1e-58, Method: Composition-based stats. Identities = 83/357 (23%), Positives = 142/357 (39%), Gaps = 30/357 (8%) Query: 13 QLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHI--WHDGDDLYHIMFDQQTKER 70 Q K L ++M + + P YR RA + L + + Sbjct: 100 QQRSKSAALSRLM---KCEVSDVIADAPWGYRRRARLSLNYRPKEQKLQMGFRKSGSSDI 156 Query: 71 MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDA 130 + + + AL+ + A + LR L ++ + + S ++ L + L A Sbjct: 157 IDVKQCPILVPQLEALLPHLRACLESLQGLRH-LGHVELVQAGSGTLMI-LRHTAPLSAA 214 Query: 131 WRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQP 190 +E +L H++ + L ++ L+ +E L F Q Sbjct: 215 DKE---KLECFSHSQGLSLFLAPQSE----ILESIS-EESPWYDSNGLRLTFSPRDFIQV 266 Query: 191 NAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249 N G+N M+ L + +L+L+CG GNF+L LA V+ VE VE R Sbjct: 267 NEGVNQQMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATRAASVVGVEGVPALVEKGRE 326 Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309 N N ++NV + +E + F + +DP R+G Sbjct: 327 NALNNGLHNVTFFHENLEE------------DVTRQPWAKNGFDKVLLDPARAGAAGVMQ 374 Query: 310 GMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 +++ P ++Y+SCNP +L RD ++L+ + I RLA+ D FP+T H+E VL R Sbjct: 375 HIIKLEPIRVVYVSCNPATLARDSDALLNAGYAIRRLAMLDMFPHTGHLESMVLFER 431 >gi|295099490|emb|CBK88579.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Eubacterium cylindroides T2-87] Length = 485 Score = 231 bits (589), Expect = 1e-58, Method: Composition-based stats. Identities = 80/389 (20%), Positives = 147/389 (37%), Gaps = 39/389 (10%) Query: 2 SGTLLIDQ-YEQQLAEKVDRLRQMMLAFQV---PNLQIFRSEPIHYRMRAEFHIWHDGDD 57 G + + E+Q + K ++ ++ + + HYR + + Sbjct: 10 GGCAYLSKSMEEQASIKKAQVEELAQRNHLKLRVGDVLTAKNTTHYRNKVIVGFAKNKGK 69 Query: 58 LYHIMFDQQTKERMRIDYFMPGSLLINA-----------LMIEMMATIRLEPLLRAKLFQ 106 +Y ++ ++ + M ++N + IE+ LLR L + Sbjct: 70 VYSGLYAAKSHRVVACQNCMMHPDIVNKIIVKIEELVSSMKIELYNEKTRTGLLRHVLIR 129 Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD- 165 + ++D+ +V + + + + R L K +Q + T I + Sbjct: 130 YAH---KTDEVMVVFVTSKKMFPSRRNLVNALVKEFKEIKTIVQNVNP-RNTSIVQQDET 185 Query: 166 ---YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNG 221 Y D +T L SF Q ++ + + + D +L+ YCG G Sbjct: 186 ILLYGDGMITDELCGLKISFSNRSFYQIHSEQCEVLYDMARKMCDLTKTDTVLDTYCGVG 245 Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281 L LA V VEI ++E A+ N N++ N K + M S + ++ R Sbjct: 246 TIGLTLASSCKSVTGVEINPDAIENAKLNAKQNNIKNAKFISMDSTRYMMEAKKFRN--- 302 Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSIL-STT 338 + I +DPPR+G + + ILYISC+P ++ RDL + Sbjct: 303 ---------HYDVIILDPPRAGTTKDFIEASTSLQPKKILYISCDPKTMMRDLVMFRQKG 353 Query: 339 HTIERLALFDQFPYTRHMECGVLLVRKPS 367 + ++ L D FP+T H+E VLL K + Sbjct: 354 YMTNKIELVDMFPFTEHIETVVLLSHKKA 382 >gi|297620448|ref|YP_003708585.1| 23S rRNA (Uracil-5-)-methyltransferase [Waddlia chondrophila WSU 86-1044] gi|297375749|gb|ADI37579.1| 23S rRNA (Uracil-5-)-methyltransferase [Waddlia chondrophila WSU 86-1044] Length = 482 Score = 231 bits (589), Expect = 1e-58, Method: Composition-based stats. Identities = 83/401 (20%), Positives = 149/401 (37%), Gaps = 57/401 (14%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPNLQIFR----SEPIHYRMRAEFHIWHD--GDDLYHIM 62 Y +QL EK ++ ++ +++ P +YR + EF D G+ +M Sbjct: 94 PYSKQLKEKELLIQHQFGHLLTDSVDLYQIVPCDTPWNYRNKMEFSFSTDLEGNKYLGLM 153 Query: 63 FDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-----------LRAKLFQIDYLT 111 DQ + M + + + + L LR + T Sbjct: 154 MDQGRGKVMDLQECHLTNPWFIETVSAVRDWWEESELEAYHSYKDLGSLRTLTVREGIRT 213 Query: 112 SQSDQAIVTLIYHRLLDDAWRECAIR-----LRDALHARKYQIQLIGRANKTKI------ 160 +V L D A ++ + +RDA+ +L +I Sbjct: 214 GDR---MVNLTVSGNPDFALKKHHLEGFVAFVRDAIEPVDPDKRLSIFLTIQQIKKGYPT 270 Query: 161 ------CLDRDYVDERLTV------AGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATK 207 D + E L + L++ +F QPN + L A Sbjct: 271 QFYEMHLYGADTIREELHIQMLTEGGLEPLLFHISPAAFFQPNTLQAEKLYSLALELAQI 330 Query: 208 GIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267 + + +LYCG G + A+ +V+ VE++ S AR+N N + N+ I+ + + Sbjct: 331 SKEQVVYDLYCGTGTLGICAAKRAKQVVGVELSPESAHDARHNAKENRIENLTILTGAVR 390 Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNP 325 + ++ + F + VDPPR+GLD + + P I+Y+SCNP Sbjct: 391 RVLEEIKEKELFP----------DPDVVMVDPPRAGLDPHAIKHLLELGPPKIVYVSCNP 440 Query: 326 DSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 + ++ L + ++ + DQFP T H+E VLL +K Sbjct: 441 ATQVENVKEFLKDGYVLKAVQPVDQFPQTVHIENIVLLAKK 481 >gi|114320510|ref|YP_742193.1| 23S rRNA 5-methyluridine methyltransferase [Alkalilimnicola ehrlichii MLHE-1] gi|122311777|sp|Q0A8Y4|RUMA_ALHEH RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|114226904|gb|ABI56703.1| 23S rRNA m(5)U-1939 methyltransferase [Alkalilimnicola ehrlichii MLHE-1] Length = 445 Score = 231 bits (589), Expect = 1e-58, Method: Composition-based stats. Identities = 85/376 (22%), Positives = 135/376 (35%), Gaps = 30/376 (7%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSE----PIHYRMRAEFHIWHDGDD 57 +L E+Q+ K L + + + P YR +A + H Sbjct: 85 GCSLQHLTPERQVELKQSVLMEQFHHMGGVQPERVLAPLTGAPWGYRRKARLAVKHVPRK 144 Query: 58 LYHIMFDQQTKERM--RIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115 ++ ++ +D + + E+ I + ++ QI+ Sbjct: 145 GGVLVGFREKHSPFVAEMDRCPVLDPRVGERLTELGRLIEGL-SIPDRVPQIEVALGDET 203 Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175 A+V R L RL + N+ + L D V RL A Sbjct: 204 GALV----FRNLAPLTAADLNRLAGFARDSGLAVY-QQPGNEATMALVHDPVGRRLDYAL 258 Query: 176 RTLIYR--QIENSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHFD 232 R FTQ NA IN M++ L G +L+L+CG GNF+L LAR Sbjct: 259 PGHGVRLGFRPGDFTQVNAEINRAMVDQALDLLAVEPGQRVLDLFCGLGNFTLPLARRAS 318 Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292 V+ VE A+ VE R N N ++NV+ D + F Sbjct: 319 EVVGVEGAEALVERGRENALRNGLDNVRFYGADLTLAA------------ADQPWATGGF 366 Query: 293 KTIFVDPPRSGLDDAT-VGMVQAYPHILYISCNPDSLCRDLSIL--STTHTIERLALFDQ 349 + +DPPRSG + + I+Y+SC P +L RD L + + + D Sbjct: 367 DRVLLDPPRSGAFEVLGLVAALGPKRIVYVSCGPATLARDAGELVHRHGYRLTAAGVMDM 426 Query: 350 FPYTRHMECGVLLVRK 365 FP+T H+E + R+ Sbjct: 427 FPHTAHVESMAVFQRE 442 >gi|297587406|ref|ZP_06946051.1| 23S rRNA (uracil-5-)-methyltransferase [Finegoldia magna ATCC 53516] gi|297575387|gb|EFH94106.1| 23S rRNA (uracil-5-)-methyltransferase [Finegoldia magna ATCC 53516] Length = 442 Score = 231 bits (589), Expect = 1e-58, Method: Composition-based stats. Identities = 80/387 (20%), Positives = 144/387 (37%), Gaps = 43/387 (11%) Query: 2 SGTLLID-QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSE-PIHYRMRAE--FHIWHDGDD 57 G + +Y+ + K L ++ ++ S YR + E F G Sbjct: 76 GGCIYQKLEYDVECDLKKKTLTELYKDIYDEDITFHPSPILQGYRNKMEYTFGDSVKGGP 135 Query: 58 LYHIMFDQQTK-ERMRIDYFMPGSLLINALMIEMMA-----------TIRLEPLLRAKLF 105 L + + E N + + I+ LLR + Sbjct: 136 LVLGLHTKNKFYEITDTVDCNIIDEGFNKIRQAVQEYFRDKNYEFFKKIKHTGLLRHFII 195 Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDA---WRECAIRLRDALHARKYQIQLIGRANKTKICL 162 + + + +VT ++D ++ R+ H I +K ++ Sbjct: 196 RKSFSEDEYMINLVTTSDEFDVNDFVEFAKQIDNRIVSIYHTINDNISDAVIVDKLELLY 255 Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNG 221 ++Y+ E++ L +R SF QPN + L + G ++ +LYCG G Sbjct: 256 GKEYLTEKI----NGLEFRISPFSFFQPNPAQAEQIYNRALELAGDLSGKNVYDLYCGTG 311 Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281 + + A+ + V+ VEI +VE A+ N N + N + + F + + ++ Sbjct: 312 TIAQIFAKKAESVIGVEIVAEAVEKAQENAELNGLTNTEFICDDCLNFMEKVEKK----- 366 Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCRDL-SILSTT 338 + +DPPR G+ + ++ P +YISCNP + DL + Sbjct: 367 -----------DVVVLDPPRDGIHPKAIDRLIDINPDKFIYISCNPITQRMDLDKFIEKG 415 Query: 339 HTIERLALFDQFPYTRHMECGVLLVRK 365 + I+ L FDQFP T H E VLL +K Sbjct: 416 YKIKSLEFFDQFPRTYHCEAVVLLEKK 442 >gi|254413176|ref|ZP_05026947.1| 23S rRNA (uracil-5-)-methyltransferase [Microcoleus chthonoplastes PCC 7420] gi|196179796|gb|EDX74789.1| 23S rRNA (uracil-5-)-methyltransferase [Microcoleus chthonoplastes PCC 7420] Length = 468 Score = 231 bits (589), Expect = 2e-58, Method: Composition-based stats. Identities = 74/383 (19%), Positives = 140/383 (36%), Gaps = 49/383 (12%) Query: 9 QYEQQLAEKVDRLRQMMLAFQ-VPNLQIFR----SEPIHYRMRAEFHIWHDGDDLYH-IM 62 QY++ + K + + Q + +++I P+ YR +A + + Sbjct: 105 QYQRSV--KENLIEQALTRIGGFNSIEIAPILSADSPLAYRNKATYPMRRSSSGQVQAGY 162 Query: 63 FDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-----------LRAKLFQIDYLT 111 + + T + + ++ +N L+ ++ I+ + LR +I T Sbjct: 163 YQKGTHQLINLNQCPVQDDRLNPLLAQIKQDIQQQGWSIYNERRHQGRLRHLSLRIGRRT 222 Query: 112 SQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYV 167 + +VT L W + L + +T L + Y+ Sbjct: 223 GEMLLTLVTTDANLTNLETQAQTWLDRYPNLVGVCVNVNPHRTNVIFGVQTHCVLGQPYL 282 Query: 168 DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSL 225 E L ++ ++F Q N + V+ +QG L++ YCG G F+L Sbjct: 283 GEIFA----DLEFQLRPDTFFQVNTEAAEALFN-VIRQKLALQGTEYLVDAYCGIGTFTL 337 Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285 LA+ + L +E+ +VE A+ N N + NVK + + + Sbjct: 338 PLAKQVHQALGIEVQGTAVEQAQINAQINGITNVKFETGTVETLLPQL------------ 385 Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILS--TTHTI 341 + +DPPR G + + + ++YISC P +L RDL L + + Sbjct: 386 ---GITPDIVLLDPPRQGCNPQVIDTLLSVMPQRLVYISCKPATLARDLKRLCHLGGYQL 442 Query: 342 ERLALFDQFPYTRHMECGVLLVR 364 + D F T H+EC L + Sbjct: 443 THVQPADFFSQTPHVECAAFLEK 465 >gi|298208283|ref|YP_003716462.1| putative RNA methyltransferase [Croceibacter atlanticus HTCC2559] gi|83848204|gb|EAP86074.1| putative RNA methyltransferase [Croceibacter atlanticus HTCC2559] Length = 470 Score = 231 bits (589), Expect = 2e-58, Method: Composition-based stats. Identities = 71/391 (18%), Positives = 128/391 (32%), Gaps = 48/391 (12%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFH-------------- 50 YE QLA K + + + + + YR + EF Sbjct: 93 YEHQLAFKENEVINNLKRIGKVELPEITPILGSEDIYFYRNKMEFSFSNNRWMTLDEIKS 152 Query: 51 -IWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-------LRA 102 + D + + I NA+ + L Sbjct: 153 DVEITDKDALGFHIPGMWDKILDIKKCHLQEDPSNAIRNSVKEFALKHNLDFFDVRKQEG 212 Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162 L + T+ + + +V LI D RE + +Q + Sbjct: 213 LLRTLMIRTASTGEIMV-LIQFYKDDKEQRELLLDYIAETFPEITSLQYVINDKGNDTIY 271 Query: 163 DRDYVDER----LTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLEL 216 D++ + + L ++ SF Q N+ + L + + GD + +L Sbjct: 272 DQNVICYTGRDHIFEEMEGLKFKINAKSFYQTNSKQAYN-LYKITREFADLSGDELVYDL 330 Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276 Y G G + +A+ +V+ +E ++E A+ N N +NNV K Sbjct: 331 YTGTGTIAQFVAKKAKKVVGIESVPEAIEDAKKNAQFNEINNVDFFAGDMKHVFS----- 385 Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSI 334 ++ + I DPPR G+ V + I+Y+SCN + RDL + Sbjct: 386 ------QEFIEEHGQPDIIITDPPRDGMHKDVVAQILNIKPKRIVYVSCNSATQARDLEL 439 Query: 335 LSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 ++ + + + D FP T H+E V L + Sbjct: 440 MNAYYKVTKTQAVDMFPQTHHVENVVCLELR 470 >gi|161501989|ref|YP_001569101.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160863336|gb|ABX19959.1| hypothetical protein SARI_00005 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 431 Score = 231 bits (588), Expect = 2e-58, Method: Composition-based stats. Identities = 82/356 (23%), Positives = 138/356 (38%), Gaps = 29/356 (8%) Query: 13 QLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ-QTKERM 71 Q K L ++M + I P YR RA + D + F + + + + Sbjct: 100 QQRSKSAALARLM---KHEVNDIIAGAPWGYRRRARLSLNCLSDKTLQMGFRKAGSNDIV 156 Query: 72 RIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAW 131 ++ + + AL+ + A + R L ++ + + + ++ L + L A Sbjct: 157 NVEQCPILAPQLEALLPRIRACLTSLHGTRH-LGHVELVQAGNGTLMI-LRHTAPLSAAD 214 Query: 132 RECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPN 191 +E R H+ + L + + E L F Q N Sbjct: 215 KEKLERFS---HSEGLSLFLAPFSEILESVTG-----ETPWYDSHGLRLAFSPRDFIQVN 266 Query: 192 AGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN 250 +N M+ L D +L+L+CG GNF+L LA V+ VE VE R N Sbjct: 267 EAVNQQMVARALEWLDVRAEDRVLDLFCGMGNFTLPLATSAASVVGVEGVPALVEKGREN 326 Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310 N ++NV + +E + F + +DP R+G Sbjct: 327 AIRNGLHNVTFFHENLEE------------DVTKQPWAKNGFDKVLLDPARAGATGVMRH 374 Query: 311 MVQAYP-HILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364 +++ P ++Y+SCNP +L RD L + + RLA+ D FP+T H+E VL VR Sbjct: 375 IIKLKPIRVVYVSCNPATLARDSEALVNAGYEATRLAMLDMFPHTGHLESMVLFVR 430 >gi|319937265|ref|ZP_08011672.1| hypothetical protein HMPREF9488_02507 [Coprobacillus sp. 29_1] gi|319807631|gb|EFW04224.1| hypothetical protein HMPREF9488_02507 [Coprobacillus sp. 29_1] Length = 379 Score = 231 bits (588), Expect = 2e-58, Method: Composition-based stats. Identities = 72/383 (18%), Positives = 146/383 (38%), Gaps = 39/383 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQV-PNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60 S L Y QQL +K +++ F V + I P YR + + Sbjct: 11 SCQYLDMDYSQQLIKKQKYCQKLFQKFPVQVHSVIGMQNPFEYRNKVIIAF---NQRYEY 67 Query: 61 IMFDQQTKERMRIDYFMPGS-------LLINALMIEMMATIRLEPLLRAKLFQIDYLTS- 112 ++++ + + I M L I +L+ + +I + L + + Sbjct: 68 GLYEEGSHRIVPIQQCMLHDQETHHILLKIQSLLKKYRTSIYDHQRHKGFLKHVLIRRAV 127 Query: 113 QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGR-------ANKTKICLDRD 165 Q++Q +V L+ + + L + K + + + + + K+ + Sbjct: 128 QTNQTLVALVVTEPMFKGSKNFCSELVKTCPSVKTVVLNVNKRQTSIVLSQQEKVLYGKG 187 Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFS 224 ++ + L L ++ SF Q N + + V +L+ YCG G Sbjct: 188 FIVDELC----GLTFKISAQSFYQINHEQCTRLYQKVSDLLEVKENQTVLDTYCGIGTIG 243 Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284 +++A +V+ VE+ + + + A N N +NN+ + EF + M +R Sbjct: 244 MMIASRVSQVIGVELNQEAYKDAVNNAKMNKINNIHFYNQDATEFMKDMANQR------- 296 Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLS-ILSTTHTI 341 + + +DPPR+G V + ++Y+SC+P + RDL + Sbjct: 297 -----TQIDCVIMDPPRAGSTKEFVQAIHILQPQQVIYVSCDPVTQARDLQWFWDIGYQT 351 Query: 342 ERLALFDQFPYTRHMECGVLLVR 364 + + FD FP T+ +E + L + Sbjct: 352 QDIYPFDMFPQTQAIETVICLTK 374 >gi|332521493|ref|ZP_08397947.1| RNA methyltransferase, TrmA family [Lacinutrix algicola 5H-3-7-4] gi|332042892|gb|EGI79091.1| RNA methyltransferase, TrmA family [Lacinutrix algicola 5H-3-7-4] Length = 470 Score = 231 bits (588), Expect = 2e-58, Method: Composition-based stats. Identities = 73/390 (18%), Positives = 142/390 (36%), Gaps = 46/390 (11%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFHIW------------ 52 YE QL K + ++ + +E +YR + EF Sbjct: 93 YEHQLFYKQKEVTNNLVRIGHIELPDVTPILGAAEQYYYRNKMEFSFSDSRWLTLEEIQS 152 Query: 53 -HDGDDLYHIMFDQQT--KERMRIDYFMPGSLLINALMIEMMATIRLEPL------LRAK 103 D D + F + + ++ + NA+ + A L + Sbjct: 153 DKDLGDRNALGFHIPGMWDKILDLNTCHLQADPSNAIRNSIKAFAVKNDLEFFNTRNQTG 212 Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD 163 L + + + + I+ L+ D A R+ + + +Q + D Sbjct: 213 LLRTLMIRTSTTGDIMVLVQFFKEDKAKRKLLLDFISEEFPQVTSLQYVINGKANDTIYD 272 Query: 164 RDYV----DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELY 217 ++ + ++ + L ++ SF Q N+ L + G++GD + +LY Sbjct: 273 QEVICYKGNDHIFEEMEGLKFKINAKSFYQTNSKQAYE-LYKLTRTFAGLEGDELVYDLY 331 Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277 G G + +A+ +V+ VE ++ AA+ N N ++NV K Sbjct: 332 TGTGTIAQFVAKQAKKVVGVEAVPDAITAAKENAQLNGIDNVSFFVGDMKNVFN------ 385 Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSIL 335 ++ + I DPPR G+ V + A ++Y+SCN + RDL ++ Sbjct: 386 -----QEFIETHGQPDVIITDPPRDGMHKDVVKQILNIAPQKVVYVSCNSATQARDLQLM 440 Query: 336 STTHTIERLALFDQFPYTRHMECGVLLVRK 365 + + ++ D FP T H+E VLL ++ Sbjct: 441 DAMYKVTKVQAVDMFPQTFHVENIVLLEKR 470 >gi|262041526|ref|ZP_06014723.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259041087|gb|EEW42161.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 434 Score = 231 bits (588), Expect = 2e-58, Method: Composition-based stats. Identities = 82/369 (22%), Positives = 135/369 (36%), Gaps = 30/369 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHI 61 Q K L ++M + P YR RA + + Sbjct: 89 GCQQQHASVPLQQQSKRAALGRLMKR---EIDDVIAGAPWGYRRRARLSLNYQPKTQQLQ 145 Query: 62 MFDQQT--KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119 M +Q K + + + AL+ + + LR L ++ + + + +V Sbjct: 146 MGFRQANAKAIVDVVQCPVLVPQLEALLPAVRECLSALSALRH-LGHVELVQADNGPLMV 204 Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179 + H A +L + L ++ + E L Sbjct: 205 --LRHTAALPAT--DREKLERFSQTHGLSLYLAPQSEILEHIHG-----EAPWYTSDGLR 255 Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVE 238 F Q N G+N M+ L D +L+L+CG GNF+L LA V+ VE Sbjct: 256 LVFSPRDFIQVNDGVNQQMVRTALEWLDLRPEDRVLDLFCGMGNFTLPLATRAAHVVGVE 315 Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298 VE R N A N ++NV + +E + F + +D Sbjct: 316 GVPALVEKGRENSARNGLSNVTFFHENLEEDVTRQA------------WAKHGFDKVLLD 363 Query: 299 PPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHM 356 P R+G +++ P ++Y+SCNP +L RD +L + I+RLA+ D FP+T H+ Sbjct: 364 PARAGAPGVMPHIIKLAPRRVVYVSCNPATLARDSETLLQAGYQIQRLAMLDMFPHTGHL 423 Query: 357 ECGVLLVRK 365 E VL R+ Sbjct: 424 ESMVLFERR 432 >gi|166366309|ref|YP_001658582.1| RNA methyltransferase [Microcystis aeruginosa NIES-843] gi|166088682|dbj|BAG03390.1| probable RNA methyltransferase [Microcystis aeruginosa NIES-843] Length = 455 Score = 231 bits (588), Expect = 2e-58, Method: Composition-based stats. Identities = 71/382 (18%), Positives = 148/382 (38%), Gaps = 47/382 (12%) Query: 13 QLAEKVDRLRQMMLAFQ-VPNLQIFRS----EPIHYRMRAEFHIWHDG-DDLYHIMFDQQ 66 QL K +++++++ + ++ P+ YR +A + + ++ + + Sbjct: 90 QLQVKKEQVQEVLTRIGGFTDPLVYPPLTGNSPLAYRNKATYPLGFSPTGNVQAGYYRRG 149 Query: 67 TKERMRIDYFMPGSLLINALMIEMMATIRLEPL-----------LRAKLFQIDYLTSQSD 115 + + ++ +N + E+ I+ + LR +I T + Sbjct: 150 SHHLINLNQCPIQDQALNPFLAEIKQDIQGQGWSIYDEKTHQGQLRHLSLRIGRHTGEIL 209 Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQ----LIGRANKTKICLDRDYVDERL 171 +++ + +A + + L +T RDY+ E+ Sbjct: 210 LTLISTDNNLQGIEAQAQQWLAKYANLVGVTVNYHPERGNAIFGAQTTTIAGRDYITEKF 269 Query: 172 TVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLAR 229 L Y+ ++F Q N + V+ ++G+ L++ YCG G F+L LA+ Sbjct: 270 A----GLTYQLAADTFFQVNTEAAEALFA-VICQKLDLKGEEILIDAYCGIGTFTLPLAK 324 Query: 230 HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHS 289 V+ +E S++ A+ N N++ N + + ++ + + Sbjct: 325 RVKEVIGLESYSFSLDRAKINAQLNNITNTTFILGAVEKTLPQL---------------T 369 Query: 290 YRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILSTT--HTIERLA 345 + I +DPPR G D + + + I+YISC +L RDL L T + + + Sbjct: 370 VKPDIILLDPPRKGCDRSVLDSLLRLQSQRIVYISCQSATLARDLQYLCKTGDYQLLEVQ 429 Query: 346 LFDQFPYTRHMECGVLLVRKPS 367 D FP T H+EC L +K + Sbjct: 430 TADFFPQTPHVECAAFLRQKTA 451 >gi|303234202|ref|ZP_07320848.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Finegoldia magna BVS033A4] gi|302494743|gb|EFL54503.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Finegoldia magna BVS033A4] Length = 442 Score = 231 bits (588), Expect = 2e-58, Method: Composition-based stats. Identities = 80/387 (20%), Positives = 144/387 (37%), Gaps = 43/387 (11%) Query: 2 SGTLLID-QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSE-PIHYRMRAEFHIW---HDGD 56 G + +Y+ + K L ++ ++ S YR + E+ G Sbjct: 76 GGCIYQKLEYDVECDLKKKTLTELYKDIYDEDITFHPSPILQGYRNKMEYTFGDSVKGGP 135 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMA-----------TIRLEPLLRAKLF 105 + + + E N + + I+ LLR + Sbjct: 136 LVLGLHTKNKFYEITDTVDCNIIDEGFNKIRQAVQEYFRDKNYEFFKKIKHTGLLRHFII 195 Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDA---WRECAIRLRDALHARKYQIQLIGRANKTKICL 162 + + + +VT ++D ++ R+ H I +K ++ Sbjct: 196 RKSFSEDEYMINLVTTSDKFDVNDFVEFAKQIDNRIVSIYHTINDNISDAVIVDKLELLY 255 Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNG 221 ++Y+ E++ L +R SF QPN + L + G ++ +LYCG G Sbjct: 256 GKEYLTEKI----NGLEFRISPFSFFQPNPAQAEQIYNRALELAGDLSGKNVYDLYCGTG 311 Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281 + + A+ + V+ VEI +VE A+ N N + N K + F + + ++ Sbjct: 312 TIAQIFAKKSESVIGVEIVAEAVEKAQENAKLNGLTNTKFICDDCLNFMEKVEKK----- 366 Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCRDL-SILSTT 338 + +DPPR G+ + ++ P +YISCNP + DL + Sbjct: 367 -----------DVVVLDPPRDGIHPKAIDRLIDINPDKFIYISCNPITQRMDLDKFIEKG 415 Query: 339 HTIERLALFDQFPYTRHMECGVLLVRK 365 + I+ L FDQFP T H E VLL RK Sbjct: 416 YEIKSLEFFDQFPRTYHCEAVVLLSRK 442 >gi|90412092|ref|ZP_01220099.1| 23S rRNA (uracil-5-)-methyltransferase [Photobacterium profundum 3TCK] gi|90327070|gb|EAS43449.1| 23S rRNA (uracil-5-)-methyltransferase [Photobacterium profundum 3TCK] Length = 454 Score = 231 bits (588), Expect = 2e-58, Method: Composition-based stats. Identities = 87/372 (23%), Positives = 143/372 (38%), Gaps = 33/372 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-------VPNLQIFRSEPIHYRMRAEFHIWHD 54 L ++ Q+ K L +M+ F V + + HYR A F + Sbjct: 90 GCNLQHLSHQGQVLAKQQALSDLMVKFAGDQQTTAVEQVTPIIAAEHHYRRCARFSVLLG 149 Query: 55 GDDLYHIMFDQ-QTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQ 113 D F + Q+K+ + + + +N L+ + + + R L I+ + + Sbjct: 150 KDGQLQFGFRKKQSKDIVDVKQCPVLAESLNELLPPLRSLLSTLKGQRH-LGHIELI--E 206 Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTV 173 +D V LI H L + + + + + L ++ ++ E Sbjct: 207 ADNGRVVLIRH--LKPFSDKDMTLILNFAQEQNVILFLAPTSDDAELIHG-----ETPYY 259 Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFD 232 L F Q N +N M+E D +L+L+CG GNFSL LA+H Sbjct: 260 RLDDLTLYFSPKDFIQVNRDVNKKMVEQATDWLDLQPNDRVLDLFCGLGNFSLPLAKHAK 319 Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292 V+ VE V A N N +N + + E + RE F Sbjct: 320 AVVGVEGIDEMVHRASENAMCNKQSNAAFYQANLDEDVTKLAWAREP------------F 367 Query: 293 KTIFVDPPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDLS-ILSTTHTIERLALFDQF 350 I +DP R+G +V+ P ++Y+SCNP +L RD +L + +ERL + D F Sbjct: 368 NKILLDPARAGAAGVMEHVVKLKPERVVYVSCNPATLARDSQVLLKKGYQLERLGMLDMF 427 Query: 351 PYTRHMECGVLL 362 P T H+E L Sbjct: 428 PQTGHLESMALF 439 >gi|16329997|ref|NP_440725.1| hypothetical protein sll1967 [Synechocystis sp. PCC 6803] gi|50401741|sp|P73374|Y1967_SYNY3 RecName: Full=Uncharacterized RNA methyltransferase sll1967 gi|1652483|dbj|BAA17405.1| sll1967 [Synechocystis sp. PCC 6803] Length = 463 Score = 230 bits (587), Expect = 2e-58, Method: Composition-based stats. Identities = 84/388 (21%), Positives = 147/388 (37%), Gaps = 45/388 (11%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMML---AFQVPNLQIFRSEP--IHYRMRAEFHIWH-DG 55 Y+ Q+ K ++ + F L+ P + YR +A + + Sbjct: 91 GCQWQHLDYQFQVESKQQQIIDALERIGGFTTLPLEPLLQSPASLGYRNKATYPLSRSKT 150 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMM-------ATIRLEPLLRAKLFQID 108 + + + + + I+ +N L+ E+ +I E + KL + Sbjct: 151 GQVQAGYYRKGSHRLVNINQCPVQDDRLNLLLTEVKKDIENRGWSIYDEEKKQGKLRHLS 210 Query: 109 YLTSQ-SDQAIVTLIY-HRLLDD------AWRECAIRLRDALHARKYQIQLIGRANKTKI 160 Q + + ++TLI H+ L D W E L + + ++T + Sbjct: 211 LRIGQRTGEMLLTLISAHKGLPDLEEQAGEWLERYPDLGGICLNIQPEPNNRIFGDETVV 270 Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCG 219 R E+ L + N+F Q N+G +L + A +LL + Y G Sbjct: 271 IAGRGICREKFA----DLSFSLGANTFFQVNSGAAELLLTRLQQALNLQGAELLVDAYAG 326 Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279 G F+L LAR + +A+E+ + SV + N N + NV + + + + Sbjct: 327 VGTFTLPLARQVRQAIAIEVNQDSVHQGQRNAEINQIANVDFLAGTVETVLPTL------ 380 Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCRDLSILST 337 S + +DPPR G + +++ P I YISC P +L RDL L Sbjct: 381 ---------SEIPDVLLLDPPRKGCAPEVLREIIRQRPEKIAYISCQPPTLARDLKFLCA 431 Query: 338 T--HTIERLALFDQFPYTRHMECGVLLV 363 + I + D FP T H+EC V+L Sbjct: 432 EGFYGITWVQGCDFFPQTAHVECAVILK 459 >gi|282600209|ref|ZP_05973425.2| 23S rRNA (uracil-5-)-methyltransferase RumA [Providencia rustigianii DSM 4541] gi|282566270|gb|EFB71805.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Providencia rustigianii DSM 4541] Length = 427 Score = 230 bits (587), Expect = 2e-58, Method: Composition-based stats. Identities = 87/364 (23%), Positives = 147/364 (40%), Gaps = 28/364 (7%) Query: 13 QLAEKVDRLRQMMLA---FQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ--T 67 Q K L+ +M P + E YR RA + + + +M +Q + Sbjct: 84 QRESKAQSLQHLMRRETGVTKPATPVISGEEYGYRRRARLGLQYQNKSRHLVMGFRQIQS 143 Query: 68 KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLL 127 + I ++AL+ + + + AKL ++ + +D V L+ H L Sbjct: 144 NTLVDIKSCPVLYTELDALLAPLSECLNSL-SIAAKLGHVELI--HADNGNVILLRH--L 198 Query: 128 DDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSF 187 RL + + I L G + + L+ VA +L + +F Sbjct: 199 VPVNVSDRNRLLEFAQKHQVNIWLAGDEGELQ-PLEPSTRLPEYQVADESLQFN--PLNF 255 Query: 188 TQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246 Q N IN M+ +A + +L+L+CG GNF+L +AR V+ VE + V Sbjct: 256 IQVNGEINQQMVAQAIAWLDISPEDRVLDLFCGMGNFTLPIARIAKSVVGVEGVENLVSQ 315 Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306 AR N N +NN + +E ++ F + +DP R+G Sbjct: 316 ARSNAQLNSINNASFYNANLEE------------QIHTQPWAQQGFNKVLLDPARAGAAG 363 Query: 307 ATVGMVQAYP-HILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 + + P I+Y+SCNP +L RD +L + + +L + D FP+T H+E L +R Sbjct: 364 VMEHLTKLMPEKIVYVSCNPTTLARDSKVLLEGGYQLHQLRMLDMFPHTSHLESMALFIR 423 Query: 365 KPSG 368 P G Sbjct: 424 SPEG 427 >gi|227889569|ref|ZP_04007374.1| possible tRNA (uracil-5-)-methyltransferase [Lactobacillus johnsonii ATCC 33200] gi|227849871|gb|EEJ59957.1| possible tRNA (uracil-5-)-methyltransferase [Lactobacillus johnsonii ATCC 33200] Length = 459 Score = 230 bits (587), Expect = 2e-58, Method: Composition-based stats. Identities = 62/387 (16%), Positives = 134/387 (34%), Gaps = 40/387 (10%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHDGDD 57 L Y +QL K + + + + + I +YR +A++ I + Sbjct: 88 LAHLSYPKQLEFKQHLILESLRKYHPRDYIKYKVKKTIPAPNAWNYRNKAQYQIEFNKGK 147 Query: 58 LYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLFQ 106 ++ ++ + + + L++ L I + R ++ + Sbjct: 148 SKLGLYAPNSRRLINLPDMPTQTKETQKVEREIKKLVDKLHIRIADFRRHTYGIKTIAVR 207 Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDAL---HARKYQIQLIGRANKTKICLD 163 T + ++T+ ++L + + NKT Sbjct: 208 QSNATGEIQVTLITIGKKIKDLKLLASHIMKLPNVVSVFQNETQWQNPQVWGNKTIKLFG 267 Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGN 222 + ++ E + ++ +F Q N + L L++ Y G G Sbjct: 268 KSHITEEILGK----KFKLSPRAFFQLNPEQTTTLYSEALKYLDLTPDQTLIDAYAGVGT 323 Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282 ++ + +V+ +E +V A+ N NHV N + ++ + ++ L Sbjct: 324 LGILASDQVRQVIGIESIPEAVIDAQENCRLNHVRNAEYIQGNVEKL------------L 371 Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLSILSTTHT 340 ++ + VDPPR+GL + + +Y+SCNP +L +DL +LS + Sbjct: 372 PELKNQGVPINALIVDPPRTGLSKKLIKTLLEVKPETFVYVSCNPATLAKDLVLLSEAYD 431 Query: 341 IERLALFDQFPYTRHMECGVLLVRKPS 367 + + D P T E LV + + Sbjct: 432 VRVIQPVDMMPQTPRWEGVAKLVLRKN 458 >gi|310830057|ref|YP_003962414.1| hypothetical protein ELI_4517 [Eubacterium limosum KIST612] gi|308741791|gb|ADO39451.1| hypothetical protein ELI_4517 [Eubacterium limosum KIST612] Length = 454 Score = 230 bits (587), Expect = 2e-58, Method: Composition-based stats. Identities = 76/391 (19%), Positives = 141/391 (36%), Gaps = 47/391 (12%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWHDGDD 57 T YE+QL K + + ++ + + I E YR + E+ D D Sbjct: 83 GCTYQSLPYEKQLELKANYVLSLLGKAGIDGFEFGGIIPSPEVFEYRNKMEYSFGDDVKD 142 Query: 58 L--YHIMFDQQTK-ERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAK 103 M ++ + ++ D N + ++ + E LR Sbjct: 143 GPLLLGMHERGSFYNIVKTDCCRLTDEDFNIIQRAVLGYFQEKDQTYFHKRSHEGFLRHL 202 Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAI------RLRDALHARKYQIQLIGRANK 157 + + T + +VT L + E + ++ LH + + + + Sbjct: 203 VIRKGRQTGEILVNLVTTSQSELDSADFTELLLTLELSGEIKGILHTINDGVADVVKKDD 262 Query: 158 TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLEL 216 I D + +++ L + SF Q N + V Q + +L Sbjct: 263 LHILYGEDCIHDKIL----GLEFEISTFSFFQTNTLGAEKLYSVVRDYVGDRQDKTIFDL 318 Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276 YCG G + VLA +V+ +E+ + +VEAA+ N AN ++N + Sbjct: 319 YCGTGTIAQVLAPVAKKVIGIELIEEAVEAAKINAEANGLHNCAFIAGDV---------- 368 Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLSI 334 ++ + I +DPPR G+ + + + +Y+SC SL RDL Sbjct: 369 -----MEKVAELPDNPDIIILDPPRDGIHPKAIFKIIGFKPDTFIYVSCKATSLARDLPF 423 Query: 335 L-STTHTIERLALFDQFPYTRHMECGVLLVR 364 + +E++ D FP+ H+E V L R Sbjct: 424 FKEAGYGVEKVCCVDMFPHVGHVETVVKLSR 454 >gi|329667719|gb|AEB93667.1| RNA methyltransferase, TrmA family [Lactobacillus johnsonii DPC 6026] Length = 459 Score = 230 bits (587), Expect = 3e-58, Method: Composition-based stats. Identities = 63/387 (16%), Positives = 133/387 (34%), Gaps = 40/387 (10%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHDGDD 57 L Y +QL K + + + + + I +YR +A++ I + Sbjct: 88 LAHLSYPKQLEFKQHLILESLRKYHPRDYIKYKVKKTIPAPNAWNYRNKAQYQIEFNKGK 147 Query: 58 LYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLFQ 106 ++ ++ + + + LI+ L I + R ++ + Sbjct: 148 SKLGLYAPNSRHLIDLPDMPTQTKETQKVEREIKKLIDKLHIRIADFRRHTDGIKTIAVR 207 Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDAL---HARKYQIQLIGRANKTKICLD 163 T + ++T+ ++L + + NKT Sbjct: 208 QSNATGEIQVTLITIGKKIKDLKLLASHIMKLPNVVSVFQNETQWQNPQVWGNKTIKLFG 267 Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGN 222 + ++ E + ++ +F Q N + L L++ Y G G Sbjct: 268 KSHITEEILGK----KFKLSPRAFFQLNPEQTTTLYSEALKYLDLTPDQTLIDAYAGVGT 323 Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282 ++ + V+ +E +V A+ N NHV N + ++ + ++ L Sbjct: 324 LGILASDQVRLVIGIESIPEAVIDAQENCRLNHVRNAEYIQGNVEKL------------L 371 Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLSILSTTHT 340 ++ + VDPPR+GL + + +Y+SCNP +L +DL +LS + Sbjct: 372 PELKNQGVPINALIVDPPRTGLSKKLIKTLLEVKPETFVYVSCNPATLAKDLVLLSDAYD 431 Query: 341 IERLALFDQFPYTRHMECGVLLVRKPS 367 + + D P T E LV + + Sbjct: 432 VRVIQPVDMMPQTPRWEGVTKLVLRKN 458 >gi|254507467|ref|ZP_05119601.1| 23S rRNA (uracil-5-)-methyltransferase [Vibrio parahaemolyticus 16] gi|219549537|gb|EED26528.1| 23S rRNA (uracil-5-)-methyltransferase [Vibrio parahaemolyticus 16] Length = 439 Score = 230 bits (586), Expect = 3e-58, Method: Composition-based stats. Identities = 86/375 (22%), Positives = 154/375 (41%), Gaps = 38/375 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAF--QVPNLQ-IFRSEPIHYRMRAEFHIWHDGDDL 58 + E+Q K L Q+M F Q L+ E + YR RA + D Sbjct: 90 GCNMQHLGLEKQQQHKQQTLSQLMRKFSGQTTALEAPLVGEALGYRRRARVSLKVDKKSR 149 Query: 59 Y--HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAK--LFQIDYLTSQS 114 +Q+KE + + +N LM + L R + L I+ + + Sbjct: 150 QLQFGFRKKQSKEIVNVVDCPVLDAGLNTLMSPLFE---LLKTFRHQENLGHIELVKGDN 206 Query: 115 DQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD--YVDERLT 172 + +V L + + LD+ + L ++ + L+ +++ + Y++ +T Sbjct: 207 TRVLV-LRHMKALDE---QDQAALEAFAKEQQVSLYLMPQSDVLNRVMGDQAHYLETGVT 262 Query: 173 VAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHF 231 + N+F Q N +N M+E L D +L+L+CG GNFSL +A+ Sbjct: 263 IPFE-------PNNFIQVNQDVNQKMVEQALNWLDLTAEDRVLDLFCGLGNFSLPMAKKV 315 Query: 232 DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291 V+ VE VE A +N N + N + + + ++ + + + Sbjct: 316 RSVIGVEGVDAMVEKATHNAEINQLENARFFQANLEQ------------DMSGQPWATEK 363 Query: 292 FKTIFVDPPRSGLDDATVGMV-QAYPHILYISCNPDSLCRDL-SILSTTHTIERLALFDQ 349 F I +DP R+G + ++Y+SCNP +L RD S+L+ + +L + D Sbjct: 364 FDKILLDPARAGASGIVDQLSDLGASRVVYVSCNPATLARDSQSLLNQGFQLRKLGMLDM 423 Query: 350 FPYTRHMECGVLLVR 364 FP+T H+E L V+ Sbjct: 424 FPHTSHLESMALFVK 438 >gi|225376677|ref|ZP_03753898.1| hypothetical protein ROSEINA2194_02319 [Roseburia inulinivorans DSM 16841] gi|225211560|gb|EEG93914.1| hypothetical protein ROSEINA2194_02319 [Roseburia inulinivorans DSM 16841] Length = 498 Score = 230 bits (586), Expect = 3e-58, Method: Composition-based stats. Identities = 87/433 (20%), Positives = 151/433 (34%), Gaps = 90/433 (20%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN------LQIFRSEPI-HYRMRAEFHIWHD 54 T Y++QL K ++++++M L I S YR + EF + Sbjct: 81 GCTYQTLPYDRQLEMKAEQVKKLMDDVIDQENRDYQFLGIKESPRQTGYRNKMEFSFGDE 140 Query: 55 --GDDLYHIMFDQQTK-ERMRIDYFMPGSLLINAL-----------MIEMMATIRLEPLL 100 L M + + + + ++ + I +R L Sbjct: 141 FKDGPLALGMHKRGSFYDIVTVENCQIVDEDFRKILSVTLAYFREKNITYYHKLRHTGYL 200 Query: 101 RAKLFQIDYLTSQSDQAIVTLIY-----------------------------HRLLDDAW 131 R L + T + +VT L + W Sbjct: 201 RHLLVRKAVKTGEILVDLVTTTQTDFPGIAAAQMDEVESTLNNAQENAFAGTEEELLEGW 260 Query: 132 RECAIR------LRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIEN 185 + + + LH R + T + +D+ E L L ++ Sbjct: 261 KAALLAADYKGIMTGILHTRNDNVADTVTNEGTDVLYGQDFFYEELL----GLRFKITPF 316 Query: 186 SFTQPNAGINVHMLEWVL-----AATKGIQGD-------LLELYCGNGNFSLVLARHFDR 233 SF Q N+ + + A G D + +LY G G + +L+ + Sbjct: 317 SFFQTNSLGAEVLYQTAREFIGDALPSGTDADIAEHGKIVFDLYSGTGTIAQMLSPVAKK 376 Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293 V+ VEI + +VEAA+ N N ++N + + LK ID + Sbjct: 377 VIGVEIIEEAVEAAKENAQLNGLHNCEFIAGDV---------------LKVIDSIEEKPD 421 Query: 294 TIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILST-THTIERLALFDQF 350 I +DPPR G++ + + Y P ++YISC P SL RDL +L + ++++ D F Sbjct: 422 YIVLDPPRDGINPKALEKIIRYNVPQMVYISCKPTSLARDLEVLQARGYEVKKVCCVDMF 481 Query: 351 PYTRHMECGVLLV 363 P T H+E VL+ Sbjct: 482 PSTFHVESVVLMQ 494 >gi|148239625|ref|YP_001225012.1| putative RNA methyltransferase [Synechococcus sp. WH 7803] gi|147848164|emb|CAK23715.1| Hypothetical RNA methyltransferase [Synechococcus sp. WH 7803] Length = 466 Score = 230 bits (586), Expect = 3e-58, Method: Composition-based stats. Identities = 81/394 (20%), Positives = 148/394 (37%), Gaps = 46/394 (11%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56 TL E Q K D L + L ++ + YR RA + Sbjct: 86 GCTLQHLSVEAQNRWKQDHLHATLHRIGGLTDLAAPLVSPEAQSLGYRNRALIPLQRLEG 145 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMM-----------ATIRLEPLLRAKLF 105 +L + + + + +++ ++AL+ + + +R +P LR Sbjct: 146 ELRLGYYRRGSHRIVNLNHCPVLDPRLDALIEPIKRDLSDTNWPMDSDLRGKPGLRHLGL 205 Query: 106 QIDYLTSQSDQAIVTLIYHRL----LDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161 +I T + ++V+ H L W + L+ + + +T Sbjct: 206 RIGVRTGELLISLVSATEHLPGLEQLAGQWMQRWPALKGVTLNVQPKRSNTVLGAQTLCL 265 Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGI--QGDLLELYCG 219 +D ++E L + +F Q N ++ + G+ ++++ YCG Sbjct: 266 QGQDVIEEYFC----GLTLQLGTTTFFQVNTERAEQVVTLIRDWIVGVAPSANVIDAYCG 321 Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279 G +L LA V+ +EI + SV A+ N N + + + + + Sbjct: 322 IGTIALPLAAAGLNVIGLEINRASVIQAQENARRNALRTATFIDGDVVDHLRQLL----- 376 Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLSILS- 336 + + VDPPR GL + M+ A P ++Y SC+P +L RDL L+ Sbjct: 377 ----------PIHQVLVVDPPRKGLAPDVLQMILAIPPAFLIYQSCDPATLARDLQQLAG 426 Query: 337 --TTHTIERLALFDQFPYTRHMECGVLLVRKPSG 368 + IE + D FP T H+EC V++VR S Sbjct: 427 PDGPYRIETIRPVDFFPQTSHLECLVMMVRISSE 460 >gi|330720605|gb|EGG98867.1| RNA methyltransferase2C TrmA family [gamma proteobacterium IMCC2047] Length = 418 Score = 230 bits (586), Expect = 3e-58, Method: Composition-based stats. Identities = 85/373 (22%), Positives = 140/373 (37%), Gaps = 29/373 (7%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSE----PIHYRMRAEFHIWH--DG 55 +L + Q+ K L + + F + YR +A + + Sbjct: 59 GCSLQHFDGQAQIEFKQATLMEHLHHFGEQKPETLLDPVTGPSYAYRRKARLGVRYVSKR 118 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115 D++ ++ I + + + I R L QI+ Sbjct: 119 DEVLVGFREKGNSFITDIGQCHILDERLGNKITLLREFIMGLEAYRT-LPQIEVAIGDDS 177 Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLT--V 173 A+V R ++ LRD A+ + I L T L + D+RLT + Sbjct: 178 VALV----FRHMEPLSESDTAALRDFGEAQDFHIYLQPGGPDTVSKLWPEQGDDRLTYRL 233 Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARH-F 231 + R FTQ NA IN ++ L +L+L+CG GNF++ LAR Sbjct: 234 DEFDVEMRFHPMDFTQVNADINRKVVHLALQYLDVQPDERVLDLFCGLGNFTMPLARSTG 293 Query: 232 DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291 V+ VE ++ VE N N + NV+ + + TQ + Sbjct: 294 AAVIGVEGSEAMVERGFENARHNGLENVEFF---AADLTQDF---------EHQPWSKQG 341 Query: 292 FKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSILS-TTHTIERLALFDQ 349 F I +DPPRSG + + + I+Y+SCNP +L RD L+ +T++ + D Sbjct: 342 FDKILIDPPRSGALEVIQKIARFKAKRIVYVSCNPATLARDAGELALHGYTLKAAGVLDM 401 Query: 350 FPYTRHMECGVLL 362 FP T H+E + Sbjct: 402 FPQTAHVESIAVF 414 >gi|304439171|ref|ZP_07399089.1| 23S rRNA (uracil-5-)-methyltransferase [Peptoniphilus duerdenii ATCC BAA-1640] gi|304372303|gb|EFM25891.1| 23S rRNA (uracil-5-)-methyltransferase [Peptoniphilus duerdenii ATCC BAA-1640] Length = 532 Score = 230 bits (586), Expect = 3e-58, Method: Composition-based stats. Identities = 76/392 (19%), Positives = 145/392 (36%), Gaps = 42/392 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMML--AFQVPNLQIFRSEPI-HYRMRAEFHIWHDGDDL 58 T YE ++A K + L++++ + +S YR + E+ + D Sbjct: 73 GCTYQNFSYEDEIAYKEEMLKKLLRENDIDAEEFYLIKSPKYKEYRNKMEYTFGDEEKDG 132 Query: 59 YHIMFDQQT---KERMRIDYFMPGSLLINALMIEMMA-----TIRLEPLLRAKLFQIDYL 110 + + E + +D + + + I+ + L + Sbjct: 133 PLALGLHKKGYFHEVVDMDKCLIVHPDFDKVRIKTREYFQGTSFYNRKTHEGVLRHLSLR 192 Query: 111 TSQSDQAIVTLIYHRLLDDAWRECAIR---------LRDALHARKYQIQLIGRANKTKIC 161 + S + ++ L+ + ++ LH ++ ++ I Sbjct: 193 RTISGEMLINLVTSSQEEIDIENYVKAMLELDLESEIKGILHTINDRMSDAVVKDELHIL 252 Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNG 221 RDYV E+L + ++ SF Q N + K LL+L+CG G Sbjct: 253 YGRDYVVEKLM----DMEFKIGPFSFFQTNTYSAEVLYTEAEKILKDKGDYLLDLFCGTG 308 Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281 + +L ++ L VEI + +V++AR N+ N + N+K + E + + Sbjct: 309 TITSILGKNRKEALGVEIVEEAVDSARENVELNGLKNIKFIPGDVYEVVKELEN------ 362 Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST-T 338 + I VDPPR+G+ + + +ILYISCNP + D+ Sbjct: 363 ---------MYDIIVVDPPRAGIGKKAIEKITEFGVENILYISCNPVTFVEDIKTFRECG 413 Query: 339 HTIERLALFDQFPYTRHMECGVLLVRKPSGWH 370 + + + DQFP T H+E LL + + H Sbjct: 414 YKEKSVHGVDQFPRTNHVETVALLYKLNTEHH 445 >gi|46579337|ref|YP_010145.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Desulfovibrio vulgaris str. Hildenborough] gi|51316680|sp|Q72DK5|Y924_DESVH RecName: Full=Uncharacterized RNA methyltransferase DVU_0924 gi|46448751|gb|AAS95404.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Desulfovibrio vulgaris str. Hildenborough] gi|311233164|gb|ADP86018.1| RNA methyltransferase, TrmA family [Desulfovibrio vulgaris RCH1] Length = 468 Score = 230 bits (586), Expect = 3e-58, Method: Composition-based stats. Identities = 83/391 (21%), Positives = 145/391 (37%), Gaps = 41/391 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ---VPNLQIFRSEP--IHYRMRAEFHIWHDGD 56 T Y QLA K +R + PN+ P +R + EF D Sbjct: 82 GCTWQNLPYPAQLAWKERFVRDSLQRIGRIEAPNVLPTLPSPLQQGFRNKMEFAFTTDDR 141 Query: 57 DLYH-IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL------LRAKLFQIDY 109 ++ H + + E + + + ++ R L ++ Sbjct: 142 EMLHLGLRRRGGHEVVDVTSCGLQTATTCRVVTTARDIARASGLPGWDDAAHRGFWRFLV 201 Query: 110 LT--SQSDQAIVTLI--YHRLLDDAWRECAIRLRDAL-------HARKYQIQLIGRANKT 158 + ++ Q +V I H + R LR A+ H+ + Q + + T Sbjct: 202 VREPARGGQCLVQCITAPHPEAEHVARAFFTALRQAVPEVTGCVHSIRSQNSQVAYGDAT 261 Query: 159 KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLEL 216 + E+L + ++F Q N + V G+ G + +L Sbjct: 262 VFTEGEIVLTEKLGAIELDFGH----DTFLQTNTRATELLYGEV-ERMAGLSGREHVWDL 316 Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276 YCG G+ +L LA H + +E SVEAA+ N A + V + A+ R Sbjct: 317 YCGVGSIALWLAEHAATICGMEATPASVEAAQRNAQAAGCTHCDFVAGDVR----ALLRS 372 Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSI 334 R + ++ + DPPR+G+ + + A I+Y+SC+P ++ RD+ + Sbjct: 373 RSKGKAQEPI-----PDVVVTDPPRAGMHPDVIDALLQTAPARIVYVSCDPATMARDVGL 427 Query: 335 LSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 L +T+ D FP+T H+E VLL K Sbjct: 428 LMQRYTLHEARPVDLFPHTPHVETVVLLSNK 458 >gi|260654818|ref|ZP_05860306.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Jonquetella anthropi E3_33 E1] gi|260630533|gb|EEX48727.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Jonquetella anthropi E3_33 E1] Length = 454 Score = 230 bits (586), Expect = 3e-58, Method: Composition-based stats. Identities = 83/379 (21%), Positives = 133/379 (35%), Gaps = 41/379 (10%) Query: 13 QLAEKVDRLRQMML---AFQVPNLQIFRSEP--IHYRMRAEFHIWHDGDDLYHIMFDQQT 67 QL K + + F +P P YR +A F + F T Sbjct: 85 QLELKSLIVEDSLRRLGGFDLPEKISCLPSPVQWGYRNKASFPVRRTASGETTGFFKMGT 144 Query: 68 KERMRIDYFMPGSLLINALMIEMMATI-------RLEPLLRAKLFQIDYLTSQSDQAIVT 120 + + I+ L + + E R L I S ++ Sbjct: 145 HDIVPIETCPLVCDQAAQLYGTLRGLVQDGGFSAYDEKTGRGWLRHIVVRASTYGSGLLA 204 Query: 121 L--IYHRLLDDAW---RECAIRLRDALHARKYQIQLIGRANKTKICLDRD---YVDERLT 172 L + + + R+ L+ A I + +I D +R+ Sbjct: 205 LLVVTSKPDQEGMASLRDLWRYLQSRQPALSGLALSINPSRGNRIIGDETVPVAGTDRVH 264 Query: 173 VAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD 232 SF Q N + ++ + LELYCG G+ + LAR Sbjct: 265 ECLGPFRLEYDGTSFFQVNTAQAARLFDYASSLVPDGS-RTLELYCGVGSLTAFLARKSR 323 Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292 V A EI P+VE AR N++ N++ NV++ +++ + Sbjct: 324 AVTAAEIWPPAVEMARKNMSGNNLTNVELRLSPAEKLPSDLFE---------------GQ 368 Query: 293 KTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSIL-STTHTIE--RLALF 347 + VDPPR+G D + + I+Y+SCNP +L RD + L S + + + F Sbjct: 369 DCLVVDPPRTGCDGEMLARLAGTSIKSIVYVSCNPATLARDAARLQSAGYQLVTSSVRAF 428 Query: 348 DQFPYTRHMECGVLLVRKP 366 D FP T H+E LL RK Sbjct: 429 DMFPQTSHVETVALLCRKD 447 >gi|2196421|dbj|BAA20428.1| unnamed protein product [Synechocystis sp. PCC 6803] Length = 463 Score = 230 bits (586), Expect = 3e-58, Method: Composition-based stats. Identities = 84/388 (21%), Positives = 147/388 (37%), Gaps = 45/388 (11%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMML---AFQVPNLQIFRSEP--IHYRMRAEFHIWH-DG 55 Y+ Q+ K ++ + F L+ P + YR +A + + Sbjct: 91 GCQWQHLDYQFQVESKQQQIIDALERIGGFTXLPLEPLLQSPASLGYRNKATYPLSRSKT 150 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMM-------ATIRLEPLLRAKLFQID 108 + + + + + I+ +N L+ E+ +I E + KL + Sbjct: 151 GQVQAGYYRKGSHRLVNINQCPVQDDRLNLLLTEVKKDIENRGWSIYDEEKKQGKLRHLS 210 Query: 109 YLTSQ-SDQAIVTLIY-HRLLDD------AWRECAIRLRDALHARKYQIQLIGRANKTKI 160 Q + + ++TLI H+ L D W E L + + ++T + Sbjct: 211 LRIGQRTGEMLLTLISAHKGLPDLEEQAGEWLERYPDLGGICLNIQPEPNNRIFGDETVV 270 Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCG 219 R E+ L + N+F Q N+G +L + A +LL + Y G Sbjct: 271 IAGRGICREKFA----DLSFSLGANTFFQVNSGAAELLLTRLQQALNLQGAELLVDAYAG 326 Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279 G F+L LAR + +A+E+ + SV + N N + NV + + + + Sbjct: 327 VGTFTLPLARQVRQAIAIEVNQDSVHQGQRNAEINQIANVDFLAGTVETVLPTL------ 380 Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCRDLSILST 337 S + +DPPR G + +++ P I YISC P +L RDL L Sbjct: 381 ---------SEIPDVLLLDPPRKGCAPEVLREIIRQRPEKIAYISCQPPTLARDLKFLCA 431 Query: 338 T--HTIERLALFDQFPYTRHMECGVLLV 363 + I + D FP T H+EC V+L Sbjct: 432 EGFYGITWVQGCDFFPQTAHVECAVILK 459 >gi|307155029|ref|YP_003890413.1| RNA methyltransferase, TrmA family [Cyanothece sp. PCC 7822] gi|306985257|gb|ADN17138.1| RNA methyltransferase, TrmA family [Cyanothece sp. PCC 7822] Length = 460 Score = 230 bits (586), Expect = 3e-58, Method: Composition-based stats. Identities = 70/384 (18%), Positives = 129/384 (33%), Gaps = 50/384 (13%) Query: 11 EQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSE-----PIHYRMRAEFHIWHDGDDLY- 59 E Q K + Q + + P+ YR +A + + Sbjct: 89 EYQRTAKSLMVTQTLQRIGGFCDPPVAPILGEGNRPELKPLEYRNKASYPLGISAQGTVK 148 Query: 60 HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATI-----------RLEPLLRAKLFQID 108 + +QT + ++ +N + ++ A I + LR +I Sbjct: 149 AGYYRRQTHHIVNLNQCPVQDPRLNPFLAKIKADIAERKWTIYQEKHHQGQLRHLSLRIG 208 Query: 109 YLTSQSDQAIVTLIYHRLLDDAWRECAIR----LRDALHARKYQIQLIGRANKTKICLDR 164 T + +VT H + + ++ L + +T+ R Sbjct: 209 RRTGEILLTLVTTDVHLKGIEEQAQIWLKRYPGLVGVCLNYNPSKTNVIFGEQTQTVAGR 268 Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNF 223 Y+ E L + +F Q N +++ + L++ YCG G F Sbjct: 269 PYLREIFA----ELEFELRPETFFQVNTEAAEALIDVIFDKLELQGTETLVDAYCGIGTF 324 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 +L LAR + +E+ S+ A+ N N ++NV + + + Sbjct: 325 TLPLARRVKQAFGIELHSSSIIQAQKNAQINGLSNVSFMTGAVETLLP------------ 372 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILS--TTH 339 + + +DPPR G + + P I+YISC +L RDL L ++ Sbjct: 373 ---LVDMTPDLVLLDPPRKGCPPTVIDTLLKLKPPRIVYISCQVGTLARDLKQLCDKGSY 429 Query: 340 TIERLALFDQFPYTRHMECGVLLV 363 + + D FP T H+EC L Sbjct: 430 HLTFVQPADFFPQTSHVECAAFLS 453 >gi|24374962|ref|NP_719005.1| 23S rRNA 5-methyluridine methyltransferase [Shewanella oneidensis MR-1] gi|50401580|sp|Q8EBQ3|RUMA_SHEON RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|24349686|gb|AAN56449.1|AE015782_1 RNA methyltransferase, TrmA family [Shewanella oneidensis MR-1] Length = 449 Score = 230 bits (586), Expect = 3e-58, Method: Composition-based stats. Identities = 87/376 (23%), Positives = 142/376 (37%), Gaps = 34/376 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN---LQIFRSEPIHYRMRAEFHIWHDG--D 56 L Q K L +M F E HYR RA D Sbjct: 91 GCDLQHMSLTAQREHKSAALVDIMAKFAGAEGSLAPALSGEGWHYRRRARLATLFDKNTK 150 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116 L + + I + + ++ L I A + + ++ L ++ + + + Sbjct: 151 QLSLGFRASSSSHVVSITECLVLAKPLSDL-IAPFAKLLNQLAAKSSLGHLELIAADNGH 209 Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRA------NKTKICLDRDYVDER 170 V I L D + +L + I L N T + +D++ Sbjct: 210 FAVIRITKSLND----KDMAKLAQFAEQHQIHICLQDNEGEFHGVNGTLLLPVYQLLDDK 265 Query: 171 LTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLAR 229 V +L + +F Q NA IN M+ L G+ +L+L+CG GNFSL LAR Sbjct: 266 TDVQPVSLTF--TPGNFVQVNAQINKAMVAQALDWLAPQPGERILDLFCGMGNFSLPLAR 323 Query: 230 HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHS 289 V+ VE V AR N AN ++N+ + + E ++ Sbjct: 324 MGADVIGVEGVPEMVSQARENAVANGLSNLTFYHGD---LSADLSSEPWMGKI------- 373 Query: 290 YRFKTIFVDPPRSGLDDATVGMVQAYPH-ILYISCNPDSLCRD-LSILSTTHTIERLALF 347 + +DP R+G ++ + + P ++Y+SCNP SL RD +L + +++L L Sbjct: 374 ---DKLLLDPARAGAYESLQWLKKMKPRQVVYVSCNPASLARDSAVLLERGYKLQKLGLI 430 Query: 348 DQFPYTRHMECGVLLV 363 D FP T H+E L Sbjct: 431 DMFPQTHHIEAMALFE 446 >gi|157374425|ref|YP_001473025.1| 23S rRNA 5-methyluridine methyltransferase [Shewanella sediminis HAW-EB3] gi|226725393|sp|A8FSS4|RUMA_SHESH RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|157316799|gb|ABV35897.1| RNA methyltransferase, TrmA family [Shewanella sediminis HAW-EB3] Length = 442 Score = 230 bits (586), Expect = 3e-58, Method: Composition-based stats. Identities = 81/371 (21%), Positives = 151/371 (40%), Gaps = 30/371 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRS----EPIHYRMRAEF--HIWHDG 55 L ++Q + K L +M + + YR RA H + Sbjct: 91 GCDLQHLSIDKQRSYKQSALVDLMAKLSHTEAESLAPALIGQEWDYRRRARLATHYNKES 150 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115 + +K+ + ID + ++ L I ++ + + + L ++ + + + Sbjct: 151 KQITLGFRASASKQVINIDVCPVLAKPLSDL-IAPLSLLLNQLSGKKALGHLELIDADNG 209 Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175 V L + L D + A +L + + + + G + I DR+ E A Sbjct: 210 YFAV-LRMTKALSD---KDAKKLTAFANEKSISLIVQGNEGEFTILGDRN---ELPYYAL 262 Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRV 234 + +F Q NA IN M++ + + +L+L+CG GNFSL LA+ V Sbjct: 263 DDVKLNFTPGNFIQVNAAINESMVKQAVDWLSVKPNERVLDLFCGVGNFSLPLAKSGAEV 322 Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294 + VE V+ AR N A + ++NV + + + +E ++ Sbjct: 323 IGVEGVPEMVKQARENAADSGLDNVSFFH---TDLSADLSKETWLGKV----------DK 369 Query: 295 IFVDPPRSGLDDATVGMVQAYPH-ILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPY 352 + +DP R+G ++ + + P I+Y+SC+P SL RD +L + +++L L D FP Sbjct: 370 LLLDPARAGAFESLQWLKKMKPKAIVYVSCDPSSLARDSEPLLKHGYKLKKLGLIDMFPQ 429 Query: 353 TRHMECGVLLV 363 T H+E L Sbjct: 430 THHIEAMALFE 440 >gi|218886478|ref|YP_002435799.1| RNA methyltransferase, TrmA family [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218757432|gb|ACL08331.1| RNA methyltransferase, TrmA family [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 479 Score = 230 bits (586), Expect = 4e-58, Method: Composition-based stats. Identities = 87/408 (21%), Positives = 144/408 (35%), Gaps = 60/408 (14%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ----VPNLQIFRSE-PIHYRMRAEFHIWHDGD 56 Y +QL K + + L I S +R + EF D D Sbjct: 84 GCAWQDLPYAEQLRWKERFVVDALGRIGGLRDANVLPILASPAERGFRNKMEFAFSQDRD 143 Query: 57 DLYH-IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLL-----------RAKL 104 H + + ++ + I + L ++ + R L R + Sbjct: 144 GQLHLGLRRRASRAVVDITECHLQTPLTVRIVEAVRELARESGLPGWDDSRQDGFWRFLV 203 Query: 105 FQIDYL---------------TSQSDQAIVTLIYHR---------LLDDAWRECAIRLRD 140 + L + Q ++ I R L +A R + Sbjct: 204 VREPELGRDAGADTPAEGEGQDTPGRQCLIQCITGRHPGAAQAVSRLAEALRARFPEVTG 263 Query: 141 ALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLE 200 +H+ + + I + + ERL L +SF Q N + + Sbjct: 264 VVHSLRLDPEQIAYGERVLAVDGEAVLTERLGGNDLLL----GPDSFFQTNTAAAGLLYD 319 Query: 201 WVLA-ATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259 A G + +LY G G +L LAR V EI +V AR N A N++ N Sbjct: 320 EARRMAAAGPDDTVWDLYSGVGAIALHLARAAGAVRGFEITPEAVNDARANAARNNILNC 379 Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PH 317 V + ++RRER + + VDPPR+GL + V V A+ Sbjct: 380 SFVSGDVR---ASLRRER--------PGEGVSPRIVVVDPPRAGLHEDVVEAVSAHQPER 428 Query: 318 ILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364 I+Y+SCNP ++ RD ++ + + ++ D FP++ H+EC LL R Sbjct: 429 IVYVSCNPATMARDAALFTARGYALQEARPVDLFPHSPHVECVALLTR 476 >gi|145340698|ref|XP_001415457.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144575680|gb|ABO93749.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 536 Score = 229 bits (585), Expect = 4e-58, Method: Composition-based stats. Identities = 71/410 (17%), Positives = 146/410 (35%), Gaps = 50/410 (12%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ--------IFRSEPIHYRMRAEFHI-W 52 Y+ Q+ K +R+ ++ + E YR + EF Sbjct: 130 GCAWQHVNYDAQVGHKRNRVVDVLARIYKAGEDAEAKVGACVGADETSRYRNKMEFAFAS 189 Query: 53 HDGDDLYHIMFDQQTKERMRIDY---FMPGSLLINALMIEMMATIRL------------- 96 + + + + +D + S + ++ + T+ Sbjct: 190 GTRGKTVVGLRPRGANDSV-VDLSGGCLLQSEEADRVLAAIRETLERADGRLEAFDRTSG 248 Query: 97 EPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIR-LRDALHARKYQIQLIGRA 155 E LR+ + ++A++ + + + + L D + + ++ + Sbjct: 249 EGTLRSVTIRTAGGERGGEKAVMVDLATTASPNELKTGPLAGLIDVVSKVPGVVSVVHTS 308 Query: 156 NKTKICLDRD------YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGI 209 T + + +L + + SF Q N ++ V A Sbjct: 309 GGTTTKAGSTKKVEAVFGENKLVETLNGIDFELSSASFFQTNTEQAARLVRQVREAC-AF 367 Query: 210 QGD----LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265 GD +L+L+CG G L +A RV+ E+ +V+ A+ N N++ N K R+ Sbjct: 368 SGDKSEIVLDLFCGVGTMGLSVASDCSRVMGWEVVPEAVKDAKRNAELNNITNAKFYRVD 427 Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISC 323 + + K ++ + DP R G+D A + +++ I+Y+SC Sbjct: 428 LARLNPSKGPKGLLTTPKGKELP--MPDIVITDPARPGMDSALIAILRTIGARRIVYVSC 485 Query: 324 NPDSLCRDLSILSTT--------HTIERLALFDQFPYTRHMECGVLLVRK 365 NP + RDL +L+ + ++ + D FP+T H+E +L RK Sbjct: 486 NPATQARDLLLLTAPSEGADDVAYELKTVTPVDMFPHTTHVESVAVLERK 535 >gi|282858081|ref|ZP_06267276.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Pyramidobacter piscolens W5455] gi|282584003|gb|EFB89376.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Pyramidobacter piscolens W5455] Length = 541 Score = 229 bits (585), Expect = 4e-58, Method: Composition-based stats. Identities = 81/398 (20%), Positives = 142/398 (35%), Gaps = 49/398 (12%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-----IFRSEPIHYRMRAEFHIWHDGD 56 L +Y Q K + + + YR +A F + G Sbjct: 75 GCQLQHAEYTLQCQIKAMLAADALRRIGGFEIDGEIPCVPSRNEWRYRNKASFPVRARGR 134 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATI-------RLEPLLRAKLFQIDY 109 F + + E + +D N L + I E L + Sbjct: 135 AGDVGFFKRGSHEIVPVDRCPVICDRANKLYAVVKNMINYGRFCCYDEKSNSGWLRHVVI 194 Query: 110 LTSQSDQAIVTLIYH------------RLLDDAWRECAIRLRDALHARKYQIQLIGRANK 157 +++ + ++ ++ L D +E LR + + + Sbjct: 195 RSARDGEELLLILVAAARPEGGALESLERLYDHLKERFPELRGLVVNVNPDEGNVIIGAE 254 Query: 158 TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELY 217 + + D + ERL SF Q N G + + + +G +LLELY Sbjct: 255 SVLVKGEDRLTERLG----NFRLDYDGTSFFQANPGQAEQLFAYAASLAEGQ--NLLELY 308 Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277 CG G + L+R + AVE+ +V AR N +N + + +++ +++ Sbjct: 309 CGVGALTAFLSRKAKTIRAVEVWASAVALARENGESNRIEGLTVLQGAAENVVA------ 362 Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSIL 335 + VDPPR+G D + + + A P +LYISCNP +L RD ++L Sbjct: 363 --------PADLEGIDCVVVDPPRAGCDKSLIETIAASRVPRVLYISCNPATLARDAALL 414 Query: 336 -STTHTI--ERLALFDQFPYTRHMECGVLLVRKPSGWH 370 + + + L +FD FP T H+E LL + H Sbjct: 415 RDAGYVLDMDSLKVFDMFPQTCHVETVCLLSKLHEAKH 452 >gi|154492137|ref|ZP_02031763.1| hypothetical protein PARMER_01769 [Parabacteroides merdae ATCC 43184] gi|154087362|gb|EDN86407.1| hypothetical protein PARMER_01769 [Parabacteroides merdae ATCC 43184] Length = 474 Score = 229 bits (585), Expect = 4e-58, Method: Composition-based stats. Identities = 72/402 (17%), Positives = 144/402 (35%), Gaps = 55/402 (13%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI-----FRSEPIHYRMRAEFHIWHDG- 55 YE+Q+ K ++ + ++ YR + EF + Sbjct: 84 GCKWQHLPYEEQIRYKHKQVIDNLTRIGKIEMEEILPIKGSKHTTFYRNKLEFTFSNKKW 143 Query: 56 --------DDLYHIMFDQQTK------ERMRIDYFMPGSLLINALMIEMMATIRLEP--- 98 + + M + + I + + N + + + Sbjct: 144 LTEEEVKTEAKFDCMDAVGFHIPGMFDKVLDIHKCWLQNDISNRIRLAVKEYCLTHEGYP 203 Query: 99 --LLRAKLFQIDYL---TSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIG 153 LR + + L T+ + +V L++ + + + + +I Sbjct: 204 FFDLRNQEGFVRTLMIRTASTGDLMVVLVFFYEDVERREALLSYVAEQFPEITSLMYVIN 263 Query: 154 RA-----NKTKICL--DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAAT 206 + + +D++ E + L ++ SF Q N+ L V Sbjct: 264 EKCNDTITDQDVLVFRGKDHIIEDM----EGLQFKVGPKSFYQTNSEQAYE-LYKVAREF 318 Query: 207 KGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRM 264 G+ G+ + +LY G G + ++R +V+ +E ++E A+ N + N + N Sbjct: 319 AGLTGNEMVYDLYTGTGTIANFVSRQAKKVIGIEYVPEAIEDAKVNSSLNKIENTLFYAG 378 Query: 265 SSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYIS 322 K+ +D R I DPPR+G+ D + + I+Y+S Sbjct: 379 DMKDILT-----------QDFINQHGRPDVIITDPPRAGMHDDVINTILFAEPERIVYVS 427 Query: 323 CNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 CNP + RDLS+LS + ++++ D FP+T H+E VLL + Sbjct: 428 CNPATQARDLSLLSVKYAVKKVQPVDMFPHTHHVENVVLLEK 469 >gi|309810186|ref|ZP_07704031.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners SPIN 2503V10-D] gi|315653660|ref|ZP_07906580.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus iners ATCC 55195] gi|308169458|gb|EFO71506.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners SPIN 2503V10-D] gi|315489022|gb|EFU78664.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus iners ATCC 55195] Length = 355 Score = 229 bits (585), Expect = 4e-58, Method: Composition-based stats. Identities = 69/371 (18%), Positives = 143/371 (38%), Gaps = 40/371 (10%) Query: 20 RLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMR 72 ++ +L F N Q I + +YR +A++ I + + M+ ++++ + Sbjct: 1 MIKDSLLKFHPRNYQKIKVKNTIPAPKQWYYRNKAQYQIESIKNKISLGMYAPKSQKIID 60 Query: 73 IDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTL 121 + S LI + I + + + ++ + + + T + +VT+ Sbjct: 61 LPIMPTQSKNTQKIEFAIKKLIEKMHIAIADSRYKKDGIKTVVVRQSHATDEIQVTLVTI 120 Query: 122 IYHRLLDDAWRECAIRLRDAL---HARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTL 178 + D E I L + + + NKT + ++Y+ E++ Sbjct: 121 GKNIKNLDKLAEKIIELENVVSVFQNESQWNNPLVWGNKTTKLIGKNYITEQILNK---- 176 Query: 179 IYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFSLVLARHFDRVLAV 237 + +F Q N + L + +L + Y G G ++ + +V+ + Sbjct: 177 KFILSPRAFFQLNPEQTEVLYSTALNYLELNANSVLVDAYAGVGTLGILASEKVKQVIGI 236 Query: 238 EIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFV 297 E ++ A++N N+V N + + S ++ M+++ + V Sbjct: 237 ESIPEAIADAQFNCRLNNVKNAEYINGSVEKILPQMQKD------------GIAIDALIV 284 Query: 298 DPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRH 355 DPPR+GL+ V + +YISCNP +L RDL +LS + + + D P T Sbjct: 285 DPPRTGLNKQLVKTLLTCKPKDFVYISCNPSTLARDLVLLSQAYDVRLIQPVDMMPQTPR 344 Query: 356 MECGVLLVRKP 366 E LV + Sbjct: 345 WEGIAKLVLRK 355 >gi|148242321|ref|YP_001227478.1| putative RNA methyltransferase [Synechococcus sp. RCC307] gi|147850631|emb|CAK28125.1| Hypothetical RNA methyltransferase [Synechococcus sp. RCC307] Length = 455 Score = 229 bits (585), Expect = 4e-58, Method: Composition-based stats. Identities = 76/386 (19%), Positives = 154/386 (39%), Gaps = 43/386 (11%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN--LQIFRS--EPIHYRMRAEFHIWHDGDD 57 +LL Q + Q K +L+ + ++ RS + YR RA + + Sbjct: 83 GCSLLHWQDQAQSEWKQQQLQNTLRRVGRLECLVEPIRSTQAVLGYRNRAIIPVQERDNS 142 Query: 58 LYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIR-----------LEPLLRAKLFQ 106 L F + + + + +++ ++AL+ + A ++ + LLR + + Sbjct: 143 LKAGFFQRGSHQVVNMNHCPVLDPRLDALIEPLKADLQAAGWPIYNEDTQKGLLRQLVLR 202 Query: 107 IDYLTSQSDQAIVTLIY----HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162 + + +V + L + W + L + + + K ++ Sbjct: 203 AGVSSGEVLLGVVVRDDQFQGAQELAEQWMQRWPELVGVVLNVQPKPGNTLLGPKERLLA 262 Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNG 221 R ++ E ++ +F Q + +++ + + + G++L + YCG G Sbjct: 263 GRPWLMESFA----GRRFQIGLGTFFQVHHQQAEALVDALRSELQLQSGEVLVDAYCGVG 318 Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281 L L + R++ +E ++ S+E A+ N N + + S + RR +EF Sbjct: 319 TLGLPLIQEGVRLIGIEQSRESIERAQCNALLNGLEDTDFHAGSVE------RRLQEFLP 372 Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILS--T 337 D + +DPPR GLD ++ P + Y+SCNP +L RDL++L Sbjct: 373 FTD---------VLLLDPPRKGLDARVCEAIREQPPARMAYVSCNPATLARDLALLCADQ 423 Query: 338 THTIERLALFDQFPYTRHMECGVLLV 363 + ++ FD FP T H+E +L Sbjct: 424 RFELTKVVPFDFFPQTTHIEAMAILT 449 >gi|218187673|gb|EEC70100.1| hypothetical protein OsI_00745 [Oryza sativa Indica Group] Length = 624 Score = 229 bits (584), Expect = 5e-58, Method: Composition-based stats. Identities = 73/422 (17%), Positives = 146/422 (34%), Gaps = 89/422 (21%) Query: 14 LAEKVDRLRQMMLAFQVPNLQIFRSEP--------------IHYRMRAEFHIWHD----- 54 + K ++R++++ F + + S YR + EF Sbjct: 218 IRHKHLQVRELLVNFGKFDPRKMESSEPDAILKPIVPCDEIFRYRNKMEFSFGTKRWMQR 277 Query: 55 -----------------GDDLYHIMFDQQT-KERMRIDYFMPGSLLINALMIEMMATIRL 96 GD + + + ++ + S + ++ + T Sbjct: 278 EWKEEKDVEVVKEEKVEGDGYSLGLHAPGFFDKVLHVEKCLLQSEPADKVLAIVQETWLD 337 Query: 97 EPL-------------LRAKLFQID-YLTSQSDQAIV---TLIYHRLLDDAWRECAIRLR 139 L L+ + + +T+ + + +V T Y L + ++ Sbjct: 338 PALGLTPYDVHKHVGFLKHLMIRTGRNITTGAPEVMVNFVTSCYKPELLEPLVNNITKIP 397 Query: 140 D---ALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINV 196 + ++ + + + + E L R L ++ NSF Q N Sbjct: 398 EVVSIMNNVNTSVGNTSVGEEEYTLYGKPTITEML----RGLTFQISANSFFQTNTKQAD 453 Query: 197 HMLEWVLAATKGIQGD----LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIA 252 +L ++ + G++GD +L+L+CG G L LAR V E+ ++ A+ N Sbjct: 454 -VLYKLIGESAGLKGDGSEIILDLFCGTGTIGLTLARRAKHVYGYEVVPEAIADAKKNAK 512 Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312 N ++N V+ + + +E + I DP R G+ + + Sbjct: 513 LNGISNATFVQGDLNKINETFGKEF------------PKPDIIISDPNRPGMHMKLIKWL 560 Query: 313 Q--AYPHILYISCNPDSLCRDLSILSTT---------HTIERLALFDQFPYTRHMECGVL 361 P I+Y+SCNP + RDL L + ++ + D FP+T H+EC + Sbjct: 561 LEVKAPRIVYVSCNPATCARDLDYLCHGVEEKDLKGCYELKTVIPVDMFPHTPHIECICV 620 Query: 362 LV 363 L Sbjct: 621 LE 622 >gi|226945755|ref|YP_002800828.1| 23S rRNA 5-methyluridine methyltransferase [Azotobacter vinelandii DJ] gi|226720682|gb|ACO79853.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Azotobacter vinelandii DJ] Length = 454 Score = 229 bits (584), Expect = 6e-58, Method: Composition-based stats. Identities = 92/375 (24%), Positives = 146/375 (38%), Gaps = 30/375 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWHDG-- 55 TL + +QLA K L + + F + YR RA + D Sbjct: 99 GCTLQALPHAEQLALKQRTLAEQLARFAGLAPEEWAPPLVGPEFGYRRRARIAVRWDATS 158 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115 L ++ + ID + ++ + A + RA L ++ + Sbjct: 159 GRLEVGFRAAASQAIVAIDDCPVLVRPLQPILRALPALLHGLARPRA-LGHVELF--HGN 215 Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175 + + + + L DA RLR Q+ L GR ++ + + RL G Sbjct: 216 TSAILVRHTAPLADA---DLQRLRVFCREHAAQLWLQGR-DEPRADAPEAPLGYRLEPWG 271 Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRV 234 L YR F Q NA +N M+ L + +L+L+ G GNF+L LA+ V Sbjct: 272 LELHYR--PGDFVQVNAVVNEAMVVQALEWLAPRPEERVLDLFSGLGNFALPLAQRSREV 329 Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294 +AVE P VE R N N +NN+ + + L + F Sbjct: 330 VAVEGVAPMVERGRENATRNGLNNLHFWQADLSK------------PLAGASWAAAGFAA 377 Query: 295 IFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSILST-THTIERLALFDQFPY 352 + DPPR G +A + +LY+SCNP +L RD + L+ + + R + D FP Sbjct: 378 VLCDPPRDGALEAVRQVGSLGAGRVLYVSCNPATLARDATELAGQGYRLRRAGILDMFPQ 437 Query: 353 TRHMECGVLLVRKPS 367 T H+E L R+P+ Sbjct: 438 TAHVEAMALFEREPA 452 >gi|261342212|ref|ZP_05970070.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterobacter cancerogenus ATCC 35316] gi|288315546|gb|EFC54484.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterobacter cancerogenus ATCC 35316] Length = 432 Score = 229 bits (584), Expect = 6e-58, Method: Composition-based stats. Identities = 79/335 (23%), Positives = 138/335 (41%), Gaps = 27/335 (8%) Query: 34 QIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ--TKERMRIDYFMPGSLLINALMIEMM 91 +I +P YR RA + + M ++ + + + I + AL+ ++ Sbjct: 118 EIIADQPWGYRRRARLSLSYQPKTARLEMGFRKAASSDIVDIRQCPILVPRLEALLPDVH 177 Query: 92 ATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQL 151 A + +R L ++ + + + +V R ++ +L H++ + L Sbjct: 178 ACLSTLDGVRH-LGHVELVLANNGPLMVL----RHTAALSKKDREKLERFSHSQDLALFL 232 Query: 152 IGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG 211 ++ + E A L F Q N G+N M+ LA Q Sbjct: 233 APQSEILEQVTG-----EAPWYASNGLRLTFSPRDFIQVNDGVNQQMIATALAWLDVQQS 287 Query: 212 D-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270 D +L+L+CG GNF+L LA+ V+ VE + V + N N + NV + ++ Sbjct: 288 DRVLDLFCGMGNFTLPLAQKAACVVGVEGVEALVAKGQENARENGLQNVTFFHQNLEDDV 347 Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP-HILYISCNPDSLC 329 R+ F I +DP R+G +++ P ++Y+SCNP +L Sbjct: 348 TQQPWARQ------------GFDKILLDPARAGAPGVMQHIIKLAPKRVVYVSCNPATLA 395 Query: 330 RDLSIL-STTHTIERLALFDQFPYTRHMECGVLLV 363 RD L S + I+RLA+ D FP+T H+E VL Sbjct: 396 RDSEALVSGGYQIQRLAMLDMFPHTGHLESIVLFE 430 >gi|317969858|ref|ZP_07971248.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Synechococcus sp. CB0205] Length = 458 Score = 229 bits (583), Expect = 6e-58, Method: Composition-based stats. Identities = 80/394 (20%), Positives = 138/394 (35%), Gaps = 49/394 (12%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWH-DGD 56 +L QL K D ++Q + + + YR RA + + Sbjct: 84 GCSLQHCSSAMQLELKRDLVQQSLSRLAKLETSVEAVWGCEQGFGYRNRALIPLERAEDG 143 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-----------LRAKLF 105 L + + + + + +++ I+AL+ + + LR Sbjct: 144 RLRAGYYRRGSHKIVNLNHCPVLDPRIDALIEPIKKDLEKTGWPVDVNLSAKGGLRHLAL 203 Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDA------WRECAIRLRDALHARKYQIQLIGRANKTK 159 ++ T + +V+ HR L W E + + + + +T Sbjct: 204 RVGSATGEILITLVS--SHRQLKGLESLAQRWMERWPEVVGVGLNVQPKASNVVMGPETD 261 Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATK-GIQGDLLELYC 218 + R ++ E + R ++F Q N ++E + G +++ Y Sbjct: 262 LIAGRAWLLEIF----DGIELRIAADTFFQVNTAQAQRLVEPLRQFFAAGKSATVIDAYS 317 Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278 G G +SL LAR +VL +E+ SV A N N + + Sbjct: 318 GIGTYSLPLARSGLKVLGLEVHPLSVSQATANAERNGITTAFFEQADVAAVLA------- 370 Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILS 336 RLK ++ VDPPR GL +G + + YISCNP +L RDL L Sbjct: 371 -ERLKMTG-------SLLVDPPRKGLRGEALGAILDGTPDRLAYISCNPSTLARDLQQLC 422 Query: 337 ---TTHTIERLALFDQFPYTRHMECGVLLVRKPS 367 + +E + D FP T H+E LL S Sbjct: 423 GEEGGYRLETVQPVDFFPQTSHVETLALLTHSGS 456 >gi|307132369|ref|YP_003884385.1| 23S rRNA (Uracil-5-) -methyltransferase rumA [Dickeya dadantii 3937] gi|306529898|gb|ADM99828.1| 23S rRNA (Uracil-5-) -methyltransferase rumA [Dickeya dadantii 3937] Length = 444 Score = 229 bits (583), Expect = 7e-58, Method: Composition-based stats. Identities = 83/358 (23%), Positives = 133/358 (37%), Gaps = 30/358 (8%) Query: 13 QLAEKVDRLRQMMLAFQ---VPNLQIFRSEPIHYRMRAEFHIWHDGD--DLYHIMFDQQT 67 Q K L +M P ++ YR RA +++ L + Sbjct: 100 QHRSKAAALTHLMTRETGAVPPEPEVIAGSAYAYRRRARLALYYQAKTRRLQMGYRQAGS 159 Query: 68 KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLL 127 + + I + AL++ + + +R +L ++ + ++ ++ R L Sbjct: 160 HDLVDIGACPILRPELEALLVPLRDCLGQLQAVR-RLGHVELVLAEQGPLVIL----RHL 214 Query: 128 DDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSF 187 D + L + A + CL D R+ L F Sbjct: 215 DPLRDADRLALTAFAARHGTALFAAPEAGALE-CLHGDMPSYRIA----GLSLAFSPRDF 269 Query: 188 TQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246 Q N IN M+E L D +L+L+CG GNF+L LA V+ VE VE Sbjct: 270 IQVNDDINQRMVERALTWLDPQPQDRVLDLFCGMGNFTLPLAARAGSVVGVEGVAALVEK 329 Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306 R N N + V +E + S F I +DP R+G Sbjct: 330 GRENAQRNGLTQVTFYHHDLEE------------DVTRQPWASMGFDKILLDPARAGAPG 377 Query: 307 ATVGMVQAYP-HILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLL 362 +V+ P ++YISCNP +L RD +L + + + RLA+ D FP+T H+E L Sbjct: 378 VMPQIVKLAPRRVVYISCNPTTLARDSKVLMAAGYRLARLAMLDMFPHTGHLESMALF 435 >gi|302334849|ref|YP_003800056.1| 23S rRNA m(5)U-1939 methyltransferase [Olsenella uli DSM 7084] gi|301318689|gb|ADK67176.1| 23S rRNA m(5)U-1939 methyltransferase [Olsenella uli DSM 7084] Length = 416 Score = 229 bits (583), Expect = 7e-58, Method: Composition-based stats. Identities = 82/403 (20%), Positives = 139/403 (34%), Gaps = 50/403 (12%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFHIWHD-G 55 L Y QL K + +++ + EP+ +R +A G Sbjct: 16 GCEWLAVPYPIQLRRKQSMMEELLGPVAGRDGARLGRIHGMEEPVSFRHKAATPFSPTRG 75 Query: 56 DDLYHIMFDQQTKERMRIDYFMP-----------GSLLINALMIEMMATIRLEPLLRAKL 104 + + T + D + + + + I R +LR + Sbjct: 76 GAIRSGFYAAGTHRIVDCDACLVEDPRARPILNDVACICAQVGIHAYQEDRGRGILRHAV 135 Query: 105 FQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR 164 + Y T D ++TL+ + E + + +Q + + +T L R Sbjct: 136 VRCGYAT---DDILLTLVTNGQQLPRSNELVEGIVRSHPEVTSIVQNVNQ-RRTNAILGR 191 Query: 165 D----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCG 219 + + + + SF Q N + + A G+ +L+ YCG Sbjct: 192 ECRTLFGPGVMHDKLLGCTFEIGPTSFYQTNPRQTEVLYALAVEAAGLRGGERVLDAYCG 251 Query: 220 NGNFSLVLARHFD---------RVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSKEF 269 G + A RV+ VE +V AR N AN + VR + F Sbjct: 252 TGTIGICAAAATRRRGAEVQDVRVIGVEQVGDAVACARRNATANGLGGSCSFVREDATAF 311 Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDS 327 + K RF +F+DPPR+G A + V A ++YISCNP + Sbjct: 312 MR-----------KAAGCGEGRFDVVFMDPPRAGSTPAFIHGVAGLAPHRVVYISCNPTT 360 Query: 328 LCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVRKPSGW 369 RDL + + + L D FP+T+H+E L+ R W Sbjct: 361 QARDLKEFQQLGYAVSTVELVDMFPHTKHVETIALMTRNGGEW 403 >gi|260771911|ref|ZP_05880829.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Vibrio metschnikovii CIP 69.14] gi|260613203|gb|EEX38404.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Vibrio metschnikovii CIP 69.14] Length = 440 Score = 229 bits (583), Expect = 7e-58, Method: Composition-based stats. Identities = 86/371 (23%), Positives = 144/371 (38%), Gaps = 30/371 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRS---EPIHYRMRAEFHIWHDGD-- 56 L E Q+ K L +M F + + S E YR RA +W D Sbjct: 90 GCDLQHLSREAQITHKQQTLSHLMSKFAKQAVPLSASIIDEDKGYRRRARLSLWWDKKTR 149 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116 L +Q+K + + +N + E+ + +L ++ + ++D Sbjct: 150 QLQVGFRRKQSKSIVNVTDCPVLEPHLNQCLAELKPLLSGFKQ-PEQLGHVELI--KADN 206 Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGR 176 V L+ H L RL + + + L+ + + E Sbjct: 207 TSVLLLRH--LAPLPSADKQRLSEFAQRHQLALYLLTDDHPLEHVQG-----ETPYYQET 259 Query: 177 TLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVL 235 + + F Q N IN M+ + + D +L+L+CG GNFSL LAR V+ Sbjct: 260 GVTMHFLPTHFIQVNQSINQRMVAQAIEWLEIQANDRVLDLFCGLGNFSLPLARIAHYVV 319 Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295 VE V A N N +NN + + ++ + + +F I Sbjct: 320 GVEGVDEMVSVASENAHLNQINNSAFYQANLEQ------------DMTKATWAAEKFDKI 367 Query: 296 FVDPPRSGLDDATVGMVQAY-PHILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYT 353 +DP R+G + Q I+Y+SCNP +L RD S+L+ + + +LA+ D FP+T Sbjct: 368 LLDPARAGAAGIVEQLGQLSAQRIVYVSCNPATLARDSQSLLNQGYHLAKLAMLDMFPHT 427 Query: 354 RHMECGVLLVR 364 H+E L V+ Sbjct: 428 SHLESMALFVK 438 >gi|159029832|emb|CAO90886.1| trmA [Microcystis aeruginosa PCC 7806] Length = 460 Score = 229 bits (583), Expect = 8e-58, Method: Composition-based stats. Identities = 69/381 (18%), Positives = 143/381 (37%), Gaps = 45/381 (11%) Query: 13 QLAEKVDRLRQMMLAFQ-VPNLQIFRS----EPIHYRMRAEFHIWHDG-DDLYHIMFDQQ 66 QL K +++++++ + ++ P+ YR +A + + ++ + + Sbjct: 95 QLQVKKEQVQEVLTRIGGFTDPLVYPPLTGTSPLAYRNKATYPLGFSPTGNVQAGYYRRG 154 Query: 67 TKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKLFQIDYLTSQSD 115 + + ++ +N + E+ I+ + LR +I T + Sbjct: 155 SHHLINLNQCPIQDQALNPFLAEIKQDIQGRGWSIYDEKTHQGQLRHLSLRIGRHTGEIL 214 Query: 116 QAIVTLIYHRLLDD----AWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERL 171 +++ + + W L +T RDY++E+ Sbjct: 215 LTLISTDNNLQGIETQAQQWLAKYANLVGVTLNYNPDRGNAIFGTQTTTIAGRDYINEKF 274 Query: 172 TVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFSLVLARH 230 L Y+ ++F Q N + + + ++L + YCG G F+L LA+ Sbjct: 275 A----GLTYQLAADTFFQINTEAAEALFSLICQKLELKGEEILIDAYCGIGTFTLPLAKR 330 Query: 231 FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY 290 V+ +E S++ A+ N N + N + + ++ + + Sbjct: 331 VKEVIGLESYSFSLDRAKINAQLNDITNTTFILGAVEKTLPQL---------------TV 375 Query: 291 RFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILSTT--HTIERLAL 346 + I +DPPR G D + + + I+YISC +L RDL L T + + + Sbjct: 376 KPDIILLDPPRKGCDRSVLDSLLQLQSQRIVYISCQSATLARDLQYLCKTGDYQLLEVQT 435 Query: 347 FDQFPYTRHMECGVLLVRKPS 367 D FP T H+EC L +K + Sbjct: 436 ADFFPQTPHVECAAFLRQKNT 456 >gi|167394809|ref|XP_001741107.1| RNA m5u methyltransferase [Entamoeba dispar SAW760] gi|165894444|gb|EDR22431.1| RNA m5u methyltransferase, putative [Entamoeba dispar SAW760] Length = 479 Score = 228 bits (582), Expect = 8e-58, Method: Composition-based stats. Identities = 87/393 (22%), Positives = 151/393 (38%), Gaps = 50/393 (12%) Query: 2 SGTLLIDQ-YEQQLAEKVDRLRQMMLA-FQVPNLQIFRSEPI--HYRMRA--EFHIWHDG 55 G L Y+QQL K ++ M+ + ++ PI YR R F + G Sbjct: 102 GGCLYQSMGYQQQLEMKKKQVLNMINKEIKEYQFDGIKASPINIGYRNRMDYTFGDGYIG 161 Query: 56 DD---LYHIMFDQQTKERMRIDYFMPGSLLINAL-----------MIEMMATIRLEPLLR 101 H M+ + + N L I I+ LR Sbjct: 162 GPLECGLHKMYHF--NDVVTTFDCRIVDKDFNKLLLFTRDYFRIKNIPHYNKIKHTGYLR 219 Query: 102 AKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRL------RDALHARKYQIQLIGRA 155 L + T++ ++T + + + + L +H I I Sbjct: 220 NLLIRKAKKTNEIMYCLITSSQLTIDLNELKNKLLELPLMGNLVSIIHCIFDDITDIVGY 279 Query: 156 NKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL- 214 NK +I DY+ E L L ++ SF Q N+ + + V + D++ Sbjct: 280 NKMEILYGNDYITEELL----GLHFKITPMSFFQTNSLGAEVLYQTVREYITTTKCDIIF 335 Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274 +LYCG G + +L+ +++ VE+ ++ AA+ N N + N + Sbjct: 336 DLYCGTGTITQLLSPICKKIIGVELNPDAIHAAKLNAELNKLTNCEFRTADVN------- 388 Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDL 332 E ++L++ R + I +DPPR+G+ + + Y I+Y+SC P +L RDL Sbjct: 389 --NELDQLQE-----NRPELIVLDPPRTGIHPTALSKIIKYGAQTIIYVSCMPTTLVRDL 441 Query: 333 SILST-THTIERLALFDQFPYTRHMECGVLLVR 364 IL + ++ + L D FP T H+E LL + Sbjct: 442 IILEQNGYKVKNITLVDMFPNTPHIETVCLLKK 474 >gi|255027845|ref|ZP_05299831.1| hypothetical protein LmonocytFSL_18421 [Listeria monocytogenes FSL J2-003] Length = 319 Score = 228 bits (582), Expect = 9e-58, Method: Composition-based stats. Identities = 56/331 (16%), Positives = 121/331 (36%), Gaps = 34/331 (10%) Query: 35 IFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSL-----------LI 83 + P YR +++ + L + +++ + + + + ++ Sbjct: 5 LGMENPWRYRNKSQVPVGFVNGKLTAGFYQKRSHAIIDMSTCLIHNEQGDFAVQKTREIL 64 Query: 84 NALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWREC---AIRLRD 140 E + +R + + + T Q +VT + + L Sbjct: 65 AKYGTEPYDEQTGKGDIRHIMTRFAHTTGQLMIVLVTTKERMPFKEEIVRDLVEQLELTS 124 Query: 141 ALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLE 200 + + ++TK +D +++ + + + SF Q N + + Sbjct: 125 IVQNINPHKTNVIFGDRTKTLWGKDIIEDTIH----GIRFAISARSFYQVNPLQTEVLYQ 180 Query: 201 WVL-AATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259 + AA + +++ YCG G+ SL LA+ V VEI +++ AR N N + N Sbjct: 181 QAIDAAELTGEETVIDAYCGIGSISLCLAKKAKHVYGVEIVDQAIQDARANAELNELANT 240 Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PH 317 ++E + + + VDPPR G D+ + + A Sbjct: 241 TFETGKAEEVIPSWYKA------------GIVADVLVVDPPRKGCDEKLLETILAMKPKK 288 Query: 318 ILYISCNPDSLCRDLSILS-TTHTIERLALF 347 ++Y+SCNP +L RD+ IL+ + +++ Sbjct: 289 VVYVSCNPGTLARDMKILTDGGYVAKKVQPV 319 >gi|282892425|ref|ZP_06300775.1| hypothetical protein pah_c253o052 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281497827|gb|EFB40188.1| hypothetical protein pah_c253o052 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 484 Score = 228 bits (582), Expect = 9e-58, Method: Composition-based stats. Identities = 90/399 (22%), Positives = 154/399 (38%), Gaps = 57/399 (14%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQIFR----SEPIHYRMRAEFHIWHDGDDLYH---IM 62 Y +QL K +++R + A P++Q F +P YR + EF D + IM Sbjct: 96 YAEQLRLKEEKIRALFSAILTPDVQFFPIIPCDDPWQYRNKMEFSFSTDLSQNKYLGLIM 155 Query: 63 FDQQTKERMRIDYFMPGSLLINALMI----------EMMATIRLEPLLRAKLFQIDYLTS 112 + K + + S ++AL + + R LR + T Sbjct: 156 DSSRGKVFNLTECHLTNSWFVDALKVTRNWWESSKLDAYHHYRNTGSLRTLTLREGQRTG 215 Query: 113 QSDQAIVTLIY-----HRLLDDAW------------RECAIRLRDALHARKYQIQLIGRA 155 + H+ DA+ EC + + +H + Sbjct: 216 DRMVILTVSGNPDYALHKNDLDAFVAGLRASIELDRPECRLSIFLRIHQIAKGMASQFYE 275 Query: 156 NKTKICLDRDYVDERLTVAGRT------LIYRQIENSFTQPNAGINVHMLEWVLAATKGI 209 + D + E+L + ++ L + ++F QPN + L + Sbjct: 276 ---MVLYGPDQIREKLYIQSQSEEQPVPLEFNISPSAFFQPNTRQAERLYSLALQLSSIS 332 Query: 210 QG-DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268 + +LYCG G S+ L++ V+ VEI +V AR N A N +NV + + E Sbjct: 333 TPITVYDLYCGTGTLSICLSKFAKTVVGVEICPEAVLDARSNAAKNGCSNVHFLCGAVHE 392 Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPD 326 + E F + VDPPR+GLD + +++ P ILY+SCNP Sbjct: 393 QLTKIIEENLFPL----------PDLVVVDPPRAGLDPHALQHLIKLSPKKILYVSCNPL 442 Query: 327 SLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364 + ++S L S + +E + DQFP+T H+E +L + Sbjct: 443 TQVDNISNLISQGYRLEAMQPVDQFPHTIHIENIAVLTK 481 >gi|281420423|ref|ZP_06251422.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella copri DSM 18205] gi|281405568|gb|EFB36248.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella copri DSM 18205] Length = 483 Score = 228 bits (582), Expect = 9e-58, Method: Composition-based stats. Identities = 75/410 (18%), Positives = 137/410 (33%), Gaps = 70/410 (17%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPNLQIFRS-----EPIHYRMRAEFHIWHDG-------- 55 YE+Q+ K ++ + L FR + YR + EF + Sbjct: 91 PYEEQIKAKQKQVEDQLTRIGKIELPEFRPIMGSVKTQEYRNKIEFGCSNKRWFTAEELA 150 Query: 56 ------------DDLYHIMFDQQTK------ERMRIDYFMPGSLLINALMIEMMATIRLE 97 H + I L N + + Sbjct: 151 QLPQKEDDTVTSLKERHAQNAIGFHITGAFDKIYPIRKCWLMDDLCNEIRNFVFEYADSH 210 Query: 98 PLL-------RAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQ 150 L + S + + ++ +H ++ + A+ L + + QI Sbjct: 211 DYTFYDLREQHGLLRNMMIRNSNTGEWMLVFQFHYD-EEGDEQRALELMQQVADKFPQIT 269 Query: 151 LIGRANKTK-----------ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML 199 + + K + D++ E + L ++ SF Q N H L Sbjct: 270 SLMYVDNQKGNDTINDLELSLFKGNDHIYELM----EDLKFKVGPKSFYQTNTEQAYH-L 324 Query: 200 EWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVN 257 V + GD + +LY G G + +A +V+ +E ++E A+ N N++ Sbjct: 325 YCVAREFANLTGDELVYDLYTGTGTIANFVAHKAKKVIGIEYVPEAIEDAKVNSQVNNIE 384 Query: 258 NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAY 315 N K+ D R I DPPR+G+ + ++ A Sbjct: 385 NTLFYAGDMKDILT-----------NDFIAQHGRPDVIITDPPRAGMHPDVINVILNAAP 433 Query: 316 PHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 I+Y+SCNP + RDL ++ + + + D FP+T H+E VLL ++ Sbjct: 434 KRIVYVSCNPATQARDLQLMDAEYKVAAVQPVDMFPHTPHVENVVLLEKR 483 >gi|160894134|ref|ZP_02074912.1| hypothetical protein CLOL250_01688 [Clostridium sp. L2-50] gi|156864167|gb|EDO57598.1| hypothetical protein CLOL250_01688 [Clostridium sp. L2-50] Length = 463 Score = 228 bits (582), Expect = 9e-58, Method: Composition-based stats. Identities = 89/402 (22%), Positives = 148/402 (36%), Gaps = 53/402 (13%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAF-----QVPNLQ--IFRSEPIHYRMRAEFHIWHD 54 YE QL K ++++++ + + I YR + E+ + Sbjct: 80 GCAYQTMSYEHQLELKAGQVKKLLDGVIDLEAHPYDWEGIIGSPVTTAYRNKMEYSFGDE 139 Query: 55 GDDLYHIMFDQQTKERMRID---YFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYL- 110 D ++ + I + S N ++ M R L K Q L Sbjct: 140 YKDGPLVLGLHKKNSMYDIVPVCNCVIVSEDYNRIVSYTMEFARAHGLSYHKKMQHVGLL 199 Query: 111 -------TSQSDQAIVTLIYHRLLDD-----AWRECAIRLR------DALHARKYQIQLI 152 + + +V L+ + A+ E + L LH + Sbjct: 200 RHLVLRQSKTNGGLLVNLVTSTDGLENLDLNAYVEGLLALPLDGTIIGILHTANDSLADA 259 Query: 153 GRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD 212 K + RDY++E + L ++ SF Q N + + Sbjct: 260 VVPEKVTLLYGRDYIEEEVL----GLHFQISPFSFFQTNTKSAERLYSKAREYAGDTKDK 315 Query: 213 LL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271 L+ +LY G G + +L+ +V+ VEI + +VEAAR N +N ++N + + Sbjct: 316 LIFDLYSGTGTIAQMLSPVASKVIGVEIVEEAVEAARENAKSNGLDNCEFIAGDV----- 370 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLC 329 LK ID + I +DPPR G++ + + Y I+YISC P SL Sbjct: 371 ----------LKVIDTIEEKPDLIILDPPRDGINPKALLKIINYGVDEIVYISCKPTSLA 420 Query: 330 RDLSILST-THTIERLALFDQFPYTRHMECGVLLVRKPSGWH 370 RDL L + +++ DQF T H+E VLL K S H Sbjct: 421 RDLVTLQEHGYYVKKACAVDQFVNTGHVETCVLLE-KTSATH 461 >gi|255034870|ref|YP_003085491.1| RNA methyltransferase, TrmA family [Dyadobacter fermentans DSM 18053] gi|254947626|gb|ACT92326.1| RNA methyltransferase, TrmA family [Dyadobacter fermentans DSM 18053] Length = 465 Score = 228 bits (582), Expect = 9e-58, Method: Composition-based stats. Identities = 76/388 (19%), Positives = 137/388 (35%), Gaps = 43/388 (11%) Query: 10 YEQQLAEKVDRLRQMMLAFQ-VPNLQIFR----SEPIHYRMRAEFHI----WHDGDDLYH 60 Y+ QL K ++ + N++I + +YR + EF W + L Sbjct: 89 YDHQLRFKRQQVVDHFERIGKIRNVEINEILAAPKTEYYRNKLEFTFSNWRWLTKEQLDS 148 Query: 61 IMFDQQT----------KERMRIDYFMPGSLLINALMIEMMATIRLEPL-------LRAK 103 +T + +D+ NA+ + + Sbjct: 149 GQPFAKTALGFHVPKRFDKIFTVDHCHLQPDPSNAIRNSLHRFSEEKGYPYYDVRFNVGV 208 Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHAR---KYQIQLIGRANKTKI 160 + + T+ S +V + + DD E L + Y + L G + Sbjct: 209 MRNVIIRTANSGDVMVIVQFGEQNDDIIAEVMAFLHENHPEITSLNYIVNLKGNDSYQDQ 268 Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCG 219 + D+ + L + SF Q N+ + + + + +LY G Sbjct: 269 EVIHYAGDKVIRETMEDLTFLVGPKSFYQTNSEQAYKLFSVARDYAQLTGNESVYDLYTG 328 Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279 G + +AR +V+ VE + +V+ AR N N + N + Sbjct: 329 TGTIANFVARSAKKVVGVEYVEAAVQDARINSQLNGITNTAFFAGDMRAIMN-------- 380 Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST 337 + R I DPPR+G+D + + A ++Y+SCN + RDL+++S Sbjct: 381 ---ESFLHTHGRPDVIITDPPRAGMDVPVIETILKAAPDRVVYVSCNTATQARDLALMSE 437 Query: 338 THTIERLALFDQFPYTRHMECGVLLVRK 365 + + R+ D FP T H+E LLVRK Sbjct: 438 DYEVTRVQPVDMFPNTHHVENVALLVRK 465 >gi|126654800|ref|ZP_01726334.1| 23S rRNA methyltransferase/RumA [Cyanothece sp. CCY0110] gi|126623535|gb|EAZ94239.1| 23S rRNA methyltransferase/RumA [Cyanothece sp. CCY0110] Length = 455 Score = 228 bits (582), Expect = 9e-58, Method: Composition-based stats. Identities = 78/375 (20%), Positives = 145/375 (38%), Gaps = 45/375 (12%) Query: 13 QLAEKVDRLRQMMLAFQ----VPNLQIFRSEP-IHYRMRAEFHIWH-DGDDLYHIMFDQQ 66 QL K +++ Q + P L I S + YR +A + + + + + Sbjct: 94 QLTAKENQVIQALKRLGGFENPPVLPILSSPEILGYRNKATYPLRRSTTGTVQAGYYQRN 153 Query: 67 TKERMRIDYFMPGSLLINALMIEMMATIRLEPL-----------LRAKLFQIDYLTSQSD 115 T + + ++ +N ++ E+ I+ + LR +I T + Sbjct: 154 THQLINLNQCPIQDARLNPILAEVKQDIQAQGWSIYNETTGTGKLRHLGLRIGRRTGEIL 213 Query: 116 QAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERL 171 +V+ L + + W + L +T + R Y+ E Sbjct: 214 LTLVSTSKNLTNFQQQAETWLQRYPNLVGVSINYNPHEGNKIFGEETFNYVGRPYLLEIF 273 Query: 172 TVAGRTLIYRQIENSFTQPNA-GINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARH 230 L ++ ++F Q N G + + + + + +L++ YCG G F+L LA+ Sbjct: 274 G----ELNFQLSSDTFFQVNTDGAELLLKVLLEKLSLTGEENLIDAYCGVGTFTLPLAQQ 329 Query: 231 FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY 290 + + +E K +VE A N N VNNV+ + + + + + Sbjct: 330 VTQAIGIESNKKAVEQAINNSKINGVNNVQFYQGTVETMLPFL---------------DF 374 Query: 291 RFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTT--HTIERLAL 346 + +DPPR G D + ++ P I+YISC P +L RDL L +T++ + Sbjct: 375 SPDIVVLDPPRKGCDRRVIDTLKEMGSPVIIYISCQPSTLARDLQKLCQQDLYTLQWIQP 434 Query: 347 FDQFPYTRHMECGVL 361 D FP T H+E L Sbjct: 435 IDFFPQTAHIESMAL 449 >gi|78357737|ref|YP_389186.1| RNA methyltransferase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78220142|gb|ABB39491.1| 23S rRNA m(5)U-747 methyltransferase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 457 Score = 228 bits (582), Expect = 1e-57, Method: Composition-based stats. Identities = 72/391 (18%), Positives = 131/391 (33%), Gaps = 49/391 (12%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ----VPNLQIFRSEPIHY-RMRAEFHIWHD-G 55 + Y QL K + + P L S + R + EF +D Sbjct: 85 GCSWQHMPYAMQLEWKQRLVHDAFVRIGRIAEPPVLPALASPAQRFFRNKMEFAFENDSP 144 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKL 104 + + + + + + I S ++ + E R + Sbjct: 145 QGIRLGLRARGSHDVINISECHLQSQRCVRIVDSVRRWAAQTGLTAWDVRSGEGFFRYLV 204 Query: 105 FQIDYLTSQSDQAIVTLIYH----------RLLDDAWRECAIRLRDALHARKYQIQLIGR 154 + T Q ++T R L D E + +H + Sbjct: 205 IRETLYTGQCMVQLITGPEKTGGNAGARAVRQLGDLLAESGEGITSFIHGERRSPVQAAY 264 Query: 155 ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL 214 A KT ++ E+L + ++F Q N +L A G G L Sbjct: 265 AEKTLYSTGDSHLTEQL----NGRTFTMAPHAFFQTNTA-ATEILSRTAADYAGQGGVLW 319 Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274 +LYCG G L +A V +E+++ +V+ A N V + + + Sbjct: 320 DLYCGVGTMGLGMADQVTSVTGMEVSEEAVQFATLNARNQQVPQARFLAGDVRRLL---- 375 Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDL 332 H + + DPPR+G+ + + +A I+YISC+P + RD Sbjct: 376 -----------IRHKEKPDIVITDPPRAGMHPDVLSALISRAPRKIVYISCDPATQARDA 424 Query: 333 SILSTTHTIERLALFDQFPYTRHMECGVLLV 363 + L+ ++ +E + D FP++ H+E L Sbjct: 425 AALTDSYRLEAVQPVDMFPHSAHIESVALFS 455 >gi|325684545|gb|EGD26708.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 460 Score = 228 bits (582), Expect = 1e-57, Method: Composition-based stats. Identities = 69/382 (18%), Positives = 136/382 (35%), Gaps = 40/382 (10%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHDGDDLYHI 61 Y QL K D L + + + I + HYR +A++ I + + Sbjct: 95 SYAGQLKFKKDNLVSALEKYHPRGYKNYKIKNTIPAPDQWHYRAKAQYQIERENHHVSLG 154 Query: 62 MFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLFQIDYL 110 ++ + + + + S LI L + + R P ++ + + Sbjct: 155 LYAPNSHQLIDLPEMPTQSEDTQATERAIRDLIIKLRVPIANRRRNLPGVKTIVVRQAEA 214 Query: 111 TSQSDQAIVTLIYHRLLDDAWRECAIRLRDAL---HARKYQIQLIGRANKTKICLDRDYV 167 + + ++T+ + + +RL + NKT ++ + Sbjct: 215 SQEMQVTLITVGHKLDNLLQLADEIMRLPKVVSVYQNETDWQNPQVWGNKTSKLRGKNQI 274 Query: 168 DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSLV 226 E + L SF Q N + L L++ Y G G ++ Sbjct: 275 TEEIMGKKFDL----SPRSFFQLNPVQTATLYSEALKLLSLTPDMTLIDAYSGVGTLGIL 330 Query: 227 LARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDID 286 A +V+ +E +V A++N+ NHV N + ++ S ++ ++ + Sbjct: 331 AADQVKQVVGIESIPEAVLDAQHNVELNHVRNAEYLQGSVEKLLPRLKED---------- 380 Query: 287 IHSYRFKTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLSILSTTHTIERL 344 + VDPPR+GL + + + +YISCNP +L +DL +L + + + Sbjct: 381 --GLPIDALIVDPPRTGLAKSLIKTLLRVKPASFVYISCNPSTLAQDLVLLGEAYDVRVI 438 Query: 345 ALFDQFPYTRHMECGVLLVRKP 366 D P T EC L + Sbjct: 439 ENVDMLPQTPRCECIAKLTLRK 460 >gi|308189665|ref|YP_003922596.1| RNA methyltransferase protein [Mycoplasma fermentans JER] gi|307624407|gb|ADN68712.1| RNA methyltransferase protein [Mycoplasma fermentans JER] Length = 438 Score = 228 bits (582), Expect = 1e-57, Method: Composition-based stats. Identities = 86/377 (22%), Positives = 152/377 (40%), Gaps = 33/377 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLA---FQVPNLQIFRSEPIHYRMRAEFHIWHDGDDL 58 S L I Y QL K + ++ + F + + +YR + + + Sbjct: 82 STPLAILNYADQLEFKENVVKYLFQRNIHFNETQKILPCEKQWNYRNKITVFVESSKGKI 141 Query: 59 YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAK---LFQIDYLTSQS- 114 ++++ T + + D + + IN L++ + I L QI S+S Sbjct: 142 KFGLYEKNTHKLVEQDSYDLANESINKLLMYLNKNINNYKCFIENGQFLKQIVVRYSESY 201 Query: 115 DQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVD-ERLTV 173 DQ ++ + + E + L L + +++I + K K Y + + + Sbjct: 202 DQMMLAFVQDKPF-----ELSEDLLKDLTSNFKNLKVILKEEKVKKTTYTYYSEAKNIQD 256 Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFD 232 L + NSF Q N+ ++ ++ ++++ Y G G SL +A Sbjct: 257 KISNLTFNIDYNSFFQVNSYQTNNLYNLLVDNLHLDKTMNVVDAYSGIGTISLKIAEKVK 316 Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292 +V +EI K +V A+ N N++NNV+ LK ID + Sbjct: 317 KVYGLEIVKEAVINAKQNAKLNNINNVEFYEGDV---------------LKTIDNIKEKI 361 Query: 293 KTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSI--LSTTHTIERLALFD 348 TI +DPPR+G+ + + I YISCNP +LCRD+ + LS + +E L D Sbjct: 362 DTIIIDPPRAGVSKEVLEKILKIEPKQIGYISCNPHTLCRDIDLLTLSKKYKLEFLKPCD 421 Query: 349 QFPYTRHMECGVLLVRK 365 F T H+E +L K Sbjct: 422 MFCQTHHVEIVAILKLK 438 >gi|75909839|ref|YP_324135.1| 23S rRNA methyltransferase/RumA [Anabaena variabilis ATCC 29413] gi|75703564|gb|ABA23240.1| 23S rRNA m(5)U-1939 methyltransferase [Anabaena variabilis ATCC 29413] Length = 460 Score = 228 bits (582), Expect = 1e-57, Method: Composition-based stats. Identities = 73/395 (18%), Positives = 145/395 (36%), Gaps = 47/395 (11%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDG- 55 YE QL K ++ Q + + + + + YR +A + + Sbjct: 84 GCQWQHIDYEYQLIAKRHQVIQALQRIGGFAQPPVDPLLVTASSLGYRNKATYPLDVSAT 143 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKL 104 + + + + + ++ +N L+ ++ I+ + +R Sbjct: 144 GQVQAGYYQKGSHHVVNLNQCPVQDPRLNPLLAQVKQDIQQRGWPIYDEKRHQGQIRHLG 203 Query: 105 FQIDYLTSQSDQAIVTLIYHRLLDD----AWRECAIRLRDALHARKYQIQLIGRANKTKI 160 +I T + +V + + W + +L R + +T+ Sbjct: 204 LRIGRRTGEILLTLVVKDGNLPGIEQQAQEWLQRYPQLVGVSLNRNPERTNAIFGRETRC 263 Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYC 218 Y+ E + ++ ++F Q +L V+ + +QG L++ YC Sbjct: 264 IAGVPYLREIFA----GMEFQVRPDTFFQVFTETAEALL-QVIESQLNLQGHETLIDAYC 318 Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278 G G +L L++ + + +E+ +V+ A N N +NNV+ + ++ M Sbjct: 319 GIGTLTLPLSKQVRQAIGLELQPEAVQQAIINAQHNGINNVEFQVGAVEKLLPKM----- 373 Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILS 336 + +DPPR G D + + A I+Y+SC +L RDL +L Sbjct: 374 ----------GIIPDVVLLDPPRKGCDRIVIESLLASKPARIVYVSCKVATLARDLKLLC 423 Query: 337 TT--HTIERLALFDQFPYTRHMECGVLLVRKPSGW 369 +TI+R+ D FP T H+E LV SG Sbjct: 424 ADGIYTIQRIQSADFFPQTSHVEAAAFLVLSQSGK 458 >gi|300811827|ref|ZP_07092297.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300497197|gb|EFK32249.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 460 Score = 228 bits (582), Expect = 1e-57, Method: Composition-based stats. Identities = 69/382 (18%), Positives = 136/382 (35%), Gaps = 40/382 (10%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHDGDDLYHI 61 Y QL K D L + + + I + HYR +A++ I + + Sbjct: 95 SYAGQLKFKKDNLVSALEKYHPRGYKNYKIKNTIPAPDQWHYRAKAQYQIERENHHVSLG 154 Query: 62 MFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLFQIDYL 110 ++ + + + + S LI L + + R P ++ + + Sbjct: 155 LYAPNSHQLIDLPEMPTQSEDTQATERAIRDLIIKLRVPIANRRRNLPGVKTIVVRQAEA 214 Query: 111 TSQSDQAIVTLIYHRLLDDAWRECAIRLRDAL---HARKYQIQLIGRANKTKICLDRDYV 167 + + ++T+ + + +RL + NKT ++ + Sbjct: 215 SQEMQVTLITVGHKLDNLLQLADKIMRLPKVVSVYQNETDWQNPQVWGNKTSKLRGKNQI 274 Query: 168 DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSLV 226 E + L SF Q N + L L++ Y G G ++ Sbjct: 275 TEEIMGKKFDL----SPRSFFQLNPVQTATLYSEALKLLSLTPDMTLIDAYSGVGTLGIL 330 Query: 227 LARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDID 286 A +V+ +E +V A++N+ NHV N + ++ S ++ ++ + Sbjct: 331 AADQVKQVVGIESIPEAVLDAQHNVEINHVRNAEYLQGSVEKLLPRLKED---------- 380 Query: 287 IHSYRFKTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLSILSTTHTIERL 344 + VDPPR+GL + + + +YISCNP +L +DL +L + + + Sbjct: 381 --GLPIDALIVDPPRTGLAKSLIKTLLRVKPASFVYISCNPSTLAQDLVLLGEAYDVRVI 438 Query: 345 ALFDQFPYTRHMECGVLLVRKP 366 D P T EC L + Sbjct: 439 ENVDMLPQTPRCECIAKLTLRK 460 >gi|294461082|gb|ADE76108.1| unknown [Picea sitchensis] Length = 575 Score = 228 bits (581), Expect = 1e-57, Method: Composition-based stats. Identities = 69/411 (16%), Positives = 133/411 (32%), Gaps = 69/411 (16%) Query: 10 YEQQLAEKVDRLRQMML-----AFQVPNLQIFRSE------PIHYRMRAEFHI----WHD 54 Y Q+ K ++R +++ P + +YR + EF W Sbjct: 175 YHAQVWAKEQQVRDLIIHIGRFPILGPGSVDYMKPILPCDVQFYYRNKMEFSFGTKSWRP 234 Query: 55 GD--DLYHIMFDQQT----------KERMRIDYFMPGSLLINALMIEMMATIRLEPLL-- 100 GD + ++ ++ + + I+ + + N ++ + + Sbjct: 235 GDVVQGHDSLYANKSALGLHVPGCFDKILPINNCLLQHKIANQVLAIVQDCWQHPASNVS 294 Query: 101 -------RAKLFQIDYLTSQSDQA----IVTLIYHRLLDDAWRECAIRLRDALHARKYQI 149 L + + + +V + + + ++ D + + Sbjct: 295 AYDVHTHSGFLKHLTLRAGRDQKGLPTLMVNFVTSSYKPELLQPIVWKIIDNIPEVVSIV 354 Query: 150 QLIGRANKTKICLDRDYVDE---RLTVAGRTLIYRQIENSFTQPNAGINVHML---EWVL 203 I + + +Y+ +T R L++ NSF Q N + E Sbjct: 355 NNINTSVGNTSIGEEEYILHGNSTITECLRGLVFEISANSFFQTNTYQAEKLYQLIEEAA 414 Query: 204 AATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVR 263 +L+L+CG G L LA+ V E+ +V AR N N + N K + Sbjct: 415 NLRGDGSEIVLDLFCGTGTIGLTLAKKVKNVYGYEVVPQAVADARRNAERNDIQNAKFIE 474 Query: 264 MSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYI 321 + E + DP R G+ + + I+Y+ Sbjct: 475 GDLNKIGDDFGNEF------------PCPDIVITDPNRPGMHTKLIRFLLKLRASRIIYV 522 Query: 322 SCNPDSLCRDLSILSTT---------HTIERLALFDQFPYTRHMECGVLLV 363 SCNP + RDL L + ++ + D FP+T H+EC LL Sbjct: 523 SCNPATCARDLDYLCHGLPESNMPGAYQLKGVQPVDMFPHTPHIECVCLLE 573 >gi|217077926|ref|YP_002335644.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Thermosipho africanus TCF52B] gi|217037781|gb|ACJ76303.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Thermosipho africanus TCF52B] Length = 440 Score = 228 bits (581), Expect = 1e-57, Method: Composition-based stats. Identities = 80/384 (20%), Positives = 156/384 (40%), Gaps = 38/384 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIF----RSEPIHYRMRAEFHIWHDGDD 57 L +YE+QL K + L S+ YR++ E+ I +D Sbjct: 76 GCNFLDLKYEKQLEFKKMVFMDQLERIAELKLNDLYIEKSSKEYEYRLKMEYSILNDYSF 135 Query: 58 LYHIMFDQQTKERMRIDYFMPGSLLINALMIEM-------MATIRLEPLLRAKLFQIDYL 110 + + + + + + + + + + ++ ++ I + L + Sbjct: 136 GFKM---KNSHKVVSVKNCIIAPKVFDKVLEKLSLTLSHFKIPIYNFKRKKGILKHVVLR 192 Query: 111 TSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY---- 166 S + + ++ + ++ A ++ K + ++ +K I L Y Sbjct: 193 YSPNGEVMLIFVTKSEYFKEGKKIASLIKKEFPFIKSIVHVMNSNDK--IVLRGPYKVLN 250 Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSL 225 D + ++ +F Q N + M+E++ ++ L+L+ G G FSL Sbjct: 251 GDGVINYEFSWEKFQVPPTAFFQNNFQVAEKMVEFLTKKLDLNGNEVVLDLFSGLGTFSL 310 Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285 LA V+AVE + SV+A R N N + N+K + + ++ + Sbjct: 311 RLAALSKFVIAVESSHVSVKAGRANANINGLKNIKFIEADALDYLNQVNE---------- 360 Query: 286 DIHSYRFKTIFVDPPRSGLD-DATVGMVQAYP-HILYISCNPDSLCRDLSILSTTHTIER 343 +F I +DPPR+G+ +A +++ P I Y+SCNP + RDL +L + IE Sbjct: 361 -----KFDVIVLDPPRTGIGTEAVKKILELSPQKIGYVSCNPTTFARDLKLLLEKYEIED 415 Query: 344 LALFDQFPYTRHMECGVLLVRKPS 367 + +FD FP T H+E +L RK + Sbjct: 416 IRIFDMFPQTYHIESIAILNRKNN 439 >gi|325125323|gb|ADY84653.1| RNA methyltransferase family [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 460 Score = 228 bits (581), Expect = 1e-57, Method: Composition-based stats. Identities = 71/386 (18%), Positives = 138/386 (35%), Gaps = 40/386 (10%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHDGDD 57 L Y QL K D L + + + I S+ HYR +A++ I + Sbjct: 91 LAHLSYAGQLKFKKDNLVSALEKYHPRGYKNYKIKNTIPASDQWHYRAKAQYQIERENHH 150 Query: 58 LYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLFQ 106 + ++ + + + + S LI L + + R P ++ + + Sbjct: 151 VSLGLYAPNSHQLIDLPEMPTQSEDTQATERAIRDLIIKLRVPIANRRRNLPGVKTIVVR 210 Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDAL---HARKYQIQLIGRANKTKICLD 163 + + ++T+ + + +RL + NKT Sbjct: 211 QAEASQEMQVTLITVGHKLDNLLQLADKIMRLPKVVSVYQNETDWQNPQVWGNKTSKLRG 270 Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGN 222 ++ V E + L +F Q N + L L++ Y G G Sbjct: 271 KNQVTEEIMGKKFAL----SPRAFFQLNPVQTATLYSEALKLLSLTPDMTLIDAYSGVGT 326 Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282 ++ A +V+ +E +V A++N+ NHV N + ++ S ++ ++ + Sbjct: 327 LGILAADQVKQVVGIESIPEAVLDAQHNVELNHVRNAEYLQGSVEKLLPRLKED------ 380 Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLSILSTTHT 340 + VDPPR+GL + + + +YISCNP +L +DL +L + Sbjct: 381 ------GLPIDALIVDPPRTGLAKSLIKTLLRVKPASFVYISCNPSTLAQDLVLLGEAYD 434 Query: 341 IERLALFDQFPYTRHMECGVLLVRKP 366 + + D P T EC L + Sbjct: 435 VRVIENVDMLPQTPRCECIAKLTLRK 460 >gi|261867310|ref|YP_003255232.1| 23S rRNA 5-methyluridine methyltransferase [Aggregatibacter actinomycetemcomitans D11S-1] gi|261412642|gb|ACX82013.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Aggregatibacter actinomycetemcomitans D11S-1] Length = 438 Score = 228 bits (581), Expect = 1e-57, Method: Composition-based stats. Identities = 83/364 (22%), Positives = 152/364 (41%), Gaps = 32/364 (8%) Query: 11 EQQLAEKVDRLRQMMLAFQVPNLQ---IFRSEPIHYRMRAEFHIWHDGD--DLYHIMFDQ 65 E Q + K L Q + Q +Q + + EP HYR R + D L + + Sbjct: 98 ELQRSAKQKALIQRLSRLQPEPIQFMPLLQGEPWHYRRRVRLSVGFDSKTRKLSIGLRRK 157 Query: 66 QTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHR 125 ++ + I++ +N L+ ++ A + + +L I+ + + + A++ R Sbjct: 158 NAQQIIPIEHCPVLEQPLNDLLPKLTA-LFAQWSAPQQLGHIELVAADNGVAMLL----R 212 Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIEN 185 + + L + + ++ + ++ L + Sbjct: 213 HIKNVAENDRTLLLKFAEQHNLMLFVQELD-----AIEHWHGEQPFYRLDNDLTLQFDIR 267 Query: 186 SFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 F Q NA +N M+ L + +L+L+CG GNF+L +AR + +E V Sbjct: 268 DFIQINAELNRQMINTALDWLALNEREHVLDLFCGMGNFTLPIARRVKSAVGIEGVSAMV 327 Query: 245 EAARYNIAANHVNNVKIVRMSSKE-FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 E AR N N +NV+ + + F ++ FN+ I +DPPR+G Sbjct: 328 EKARRNAERNRCHNVQFYQADLDKSFVNQGWAQQPFNK-------------ILLDPPRTG 374 Query: 304 LDDATVGMVQAY-PHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVL 361 A + Q +ILY+SCNP +L RD IL + + ++++A+ D FP+T H+E L Sbjct: 375 AAFALNALCQLQAENILYVSCNPATLVRDTEILRNAGYQLDKVAMIDMFPHTGHLESISL 434 Query: 362 LVRK 365 +K Sbjct: 435 FRKK 438 >gi|71278294|ref|YP_270771.1| 23S rRNA (Uracil-5-)-methyltransferase [Colwellia psychrerythraea 34H] gi|123631176|sp|Q47WQ1|RUMA_COLP3 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|71144034|gb|AAZ24507.1| 23S rRNA (Uracil-5-)-methyltransferase [Colwellia psychrerythraea 34H] Length = 469 Score = 228 bits (581), Expect = 1e-57, Method: Composition-based stats. Identities = 87/394 (22%), Positives = 161/394 (40%), Gaps = 49/394 (12%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAF-------------QVPNLQIFRSEPIHYRMRAE 48 L + E+QL K ++ + +P +S P HYR +A Sbjct: 90 GCDLQMLALEEQLLFKQQKITDLFSRSFSTQNITPEINTAHLPWQAAIKSSPWHYRRKAR 149 Query: 49 FHIWHDGDDLYHIMFDQQ-TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQI 107 + D + I F Q+ T + I ++A+ ++ + + +++ + I Sbjct: 150 IGVQFDKNAQATIGFRQKSTNQLAAIKSCPVLVEPLSAIFP-LLKKLLAQLTVKSAIGHI 208 Query: 108 DYLTS------------QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRA 155 + + + + +Q +V + + ++D I L R +I Sbjct: 209 EVIQADISDTSSADKIQKDNQVVVVVRQLKPMND----TDIGLWQLYAQRHCWHVIIDDG 264 Query: 156 NKTKICL---DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQG 211 NK D + + + +Y N F Q N +N M+ LA Sbjct: 265 NKQLPLADIKGGDSFELSYELTDTSKVY-FSSNDFIQINHQVNNAMISQALAWLNILATD 323 Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271 ++L+L+CG GNFSL LA+H RV+ VE + V+ A N N ++N + + Sbjct: 324 NVLDLFCGLGNFSLALAKHAKRVVGVEGMQTMVDKATQNSLVNGLDNCQFYQAD------ 377 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCR 330 + L + + F + +DP R+G + A + + P +LY+SC+P +L R Sbjct: 378 -----LNSHWLLEPWVQGQVFDKVLLDPARAGAEQAVSQIAELKIPCVLYVSCDPATLAR 432 Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMECGVLLV 363 D +IL S + +E+++L D F T+H+E +L Sbjct: 433 DSAILVSKGYKLEKISLMDMFSQTKHVETMILFT 466 >gi|255533504|ref|YP_003093876.1| TrmA family RNA methyltransferase [Pedobacter heparinus DSM 2366] gi|255346488|gb|ACU05814.1| RNA methyltransferase, TrmA family [Pedobacter heparinus DSM 2366] Length = 481 Score = 228 bits (581), Expect = 1e-57, Method: Composition-based stats. Identities = 74/399 (18%), Positives = 146/399 (36%), Gaps = 60/399 (15%) Query: 9 QYEQQLAEKVDRLRQMMLAFQV-----PNLQIFRSEPIHYRMRAEFHI----WHDGDDLY 59 +Y QL K + + + ++ +YR + E+ W + D+ Sbjct: 93 EYAAQLKFKHKNVEAALQRLAKIDTTGMEPILGSAQNKYYRNKLEYTFSNKRWLNKTDMM 152 Query: 60 HI-----------MFDQQTK------ERMRIDYFMPGSLLINALMIEMMATIRLEPL--- 99 M + + I++ + N + E+ L Sbjct: 153 EGAETGAPNPELEMNALGFHVPLRFDKILDIEHCYLQAEPSNTIRNEVRDYALKAGLSFY 212 Query: 100 -LRAK---LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRA 155 LR L + TS + + +V +++ + + L++ + ++ + Sbjct: 213 DLRNHEGSLRNLVIRTSSTGEVMVAVVFAYVEQEEIIGLMEFLKNRFPEITALLYIVNQK 272 Query: 156 NKTKI-------CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKG 208 I RD++ E + L ++ SF Q N+ H L + G Sbjct: 273 KNDTIFDQEVITYAGRDHIFEEM----EGLKFKIGVKSFYQTNSDQA-HELYKITKEFAG 327 Query: 209 IQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266 GD + +LY G G + +AR +V+ +E ++E A++N N ++N Sbjct: 328 FSGDELVYDLYTGAGTIANFVARSVKQVVGIEYVPTAIEDAKFNATLNGIDNTVFYAGDM 387 Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCN 324 K+ ++ + + DPPR+G+ V + I+Y+SCN Sbjct: 388 KDILT-----------REFIAEHGKPDVVITDPPRAGMHADVVERLLEMEAGKIVYVSCN 436 Query: 325 PDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363 + RDL++L + + R+ D FP+T+H+E VLL Sbjct: 437 AATQARDLALLKEKYEVVRIKPVDMFPHTQHVENVVLLK 475 >gi|318041410|ref|ZP_07973366.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Synechococcus sp. CB0101] Length = 453 Score = 228 bits (581), Expect = 1e-57, Method: Composition-based stats. Identities = 80/387 (20%), Positives = 138/387 (35%), Gaps = 43/387 (11%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFR----SEPIHYRMRAEFHIWHDGDD 57 +L Q K D +RQ + +++ + P+ YR RA + + Sbjct: 85 GCSLQHCSDPAQADLKTDLVRQALKRLAQLKVEVLPILQAASPLGYRNRALIPLERTPEG 144 Query: 58 L-YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-----------LRAKLF 105 + + + + + ++ I+ L+ + A + LR Sbjct: 145 QLRAGYYRRGSHKIVNMNRCPVLDPRIDGLIQPIKADLEATRWPVDVNLSQGGGLRHLSL 204 Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDA----WRECAIRLRDALHARKYQIQLIGRANKTKIC 161 ++ + + + +V+ + +A W+E + + + + T Sbjct: 205 RVGHHSGEVLITVVSSHNNLPGLEALAQQWQERWPEVVGVNLNIQPKATNVVLGPDTYQV 264 Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGN 220 R ++ ER ++F Q N ++ ++ +LE YCG Sbjct: 265 SGRSWLLERFA----GHELHIGADTFFQVNTAQAERVVPLLVDFFSEQPNTQVLEAYCGI 320 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G FSL LA VL +E+ SV AR N N + + Sbjct: 321 GTFSLPLAAAGLDVLGLELHHASVAQARANAERNALPTARFEIADVA------------- 367 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILST- 337 + H + + VDPPR GL + + P I YISCNP +L RDL +LS Sbjct: 368 --ASLAEHLVWAEALLVDPPRKGLAPEVMDAILQAPPRRIAYISCNPATLARDLGLLSEA 425 Query: 338 THTIERLALFDQFPYTRHMECGVLLVR 364 + I + D FP T H+EC LL R Sbjct: 426 GYRIRPIQPVDFFPQTSHVECLALLER 452 >gi|313123270|ref|YP_004033529.1| tRNA (uracil-5-)-methyltransferase related enzyme [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312279833|gb|ADQ60552.1| tRNA (Uracil-5-)-methyltransferase related enzyme [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 460 Score = 228 bits (581), Expect = 1e-57, Method: Composition-based stats. Identities = 69/382 (18%), Positives = 136/382 (35%), Gaps = 40/382 (10%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHDGDDLYHI 61 Y QL K D L + + + I + HYR +A++ I + + Sbjct: 95 SYAGQLKFKKDNLVSALEKYHPRGYKNYKIKNTIPAPDQWHYRAKAQYQIERENHHVSLG 154 Query: 62 MFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLFQIDYL 110 ++ + + + + S LI L + + R P ++ + + Sbjct: 155 LYAPNSHQLIDLPEMPTQSEDTQATERAIRDLIIKLRVPIANRRRNLPGVKTIVVRQAEA 214 Query: 111 TSQSDQAIVTLIYHRLLDDAWRECAIRLRDAL---HARKYQIQLIGRANKTKICLDRDYV 167 + + ++T+ + + +RL + NKT ++ + Sbjct: 215 SQEMQVTLITVGHKLDNLLQLADEIMRLPKVVSVYQNETDWQNPQVWGNKTSKLRGKNQI 274 Query: 168 DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSLV 226 E + L SF Q N + L L++ Y G G ++ Sbjct: 275 TEEIMGKKFDL----SPRSFFQLNPVQTATLYSEALKLLSLTPDMTLIDAYSGVGTLGIL 330 Query: 227 LARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDID 286 A +V+ +E +V A++N+ NHV N + ++ S ++ ++ + Sbjct: 331 AADQVKQVVGIESIPEAVLDAQHNVEINHVRNAEYLQGSVEKLLPRLKED---------- 380 Query: 287 IHSYRFKTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLSILSTTHTIERL 344 + VDPPR+GL + + + +YISCNP +L +DL +L + + + Sbjct: 381 --GLPIDALIVDPPRTGLAKSLIKTLLRVKPASFVYISCNPSTLAQDLVLLGEAYDVRVI 438 Query: 345 ALFDQFPYTRHMECGVLLVRKP 366 D P T EC L + Sbjct: 439 ENVDMLPQTPRCECIAKLTLRK 460 >gi|169824993|ref|YP_001692604.1| RNA methyltransferase [Finegoldia magna ATCC 29328] gi|167831798|dbj|BAG08714.1| RNA methyltransferase [Finegoldia magna ATCC 29328] Length = 442 Score = 228 bits (581), Expect = 1e-57, Method: Composition-based stats. Identities = 81/388 (20%), Positives = 147/388 (37%), Gaps = 45/388 (11%) Query: 2 SGTLLID-QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEP--IHYRMRAEFHIW---HDG 55 G + +Y+ + K L ++ ++ IF P YR + E+ G Sbjct: 76 GGCIYQKLEYDVECDLKKKTLTELYKDIYDEDI-IFHPSPILQGYRNKMEYTFGDSVKGG 134 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMA-----------TIRLEPLLRAKL 104 + + + E N + + I+ LLR + Sbjct: 135 PLVLGLHTKNKFYEITDTVDCNIIDEGFNKIRQAVQEYFRDKNYEFFKKIKHTGLLRHFI 194 Query: 105 FQIDYLTSQSDQAIVTLIYHRLLDDA---WRECAIRLRDALHARKYQIQLIGRANKTKIC 161 + + + +VT ++D ++ R+ H I +K ++ Sbjct: 195 IRKSFSDDEYMINLVTTSDKFDVNDFVEFAKQIDNRIVSIYHTINDNISDAVIVDKLELL 254 Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGN 220 ++Y+ E++ L +R SF QPN + L + G ++ +LYCG Sbjct: 255 HGKEYLTEKI----NGLEFRISPFSFFQPNPAQAEQIYTRALELAGDLSGKNVYDLYCGT 310 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G + + A+ + V+ VEI + +VE A+ N N + N + + F + + ++ Sbjct: 311 GTIAQIFAKKSESVIGVEIVEEAVEKAKENAELNGLTNTEFICDDCLNFMEKVEKK---- 366 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCRDL-SILST 337 + +DPPR G+ + ++ P +YISCNP + DL + Sbjct: 367 ------------DVVVLDPPRDGIHPKAIDRLIDINPDKFIYISCNPITQRMDLDKFIEK 414 Query: 338 THTIERLALFDQFPYTRHMECGVLLVRK 365 + I+ L FDQFP T H E VLL RK Sbjct: 415 GYEIKSLEFFDQFPRTYHCEAVVLLSRK 442 >gi|218440243|ref|YP_002378572.1| RNA methyltransferase, TrmA family [Cyanothece sp. PCC 7424] gi|218172971|gb|ACK71704.1| RNA methyltransferase, TrmA family [Cyanothece sp. PCC 7424] Length = 460 Score = 227 bits (580), Expect = 1e-57, Method: Composition-based stats. Identities = 74/396 (18%), Positives = 137/396 (34%), Gaps = 55/396 (13%) Query: 2 SGTL---LIDQYEQQLAEKVDRLRQMMLAFQ----VPNLQIFRS------EPIHYRMRAE 48 G + D Y Q K ++ Q + P I +HYR +A Sbjct: 79 GGCQWQHIEDDY--QRKAKHHQVIQTLERIGGFSNPPVAPIIPEGTVEGLTSLHYRNKAT 136 Query: 49 FHIWHDGDDLY-HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-------- 99 + + + + + + + + ++ +N L+ E+ I + Sbjct: 137 YPLAKSANGQVKAGYYRRHSHQLVNLNQCPVQDSRLNPLLAEIKGDIEQQGWTIYDEKPH 196 Query: 100 ---LRAKLFQIDYLTSQSDQAIVTLIYHRLLDD----AWRECAIRLRDALHARKYQIQLI 152 LR +I T + +VT + + W + L + Sbjct: 197 QGQLRHLSLRIGRRTGEILLTLVTTDENLPNIEKQAQIWSQRYPNLVGVCLNYNPHRTNV 256 Query: 153 GRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD 212 KT+ R Y+ E L ++ +F Q N +L + + + Sbjct: 257 IFGEKTRAISGRPYLREIFA----GLEFQLRPETFFQINTQAAEILLGVIFDTLELKGNE 312 Query: 213 -LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271 L++ YCG G F+L LA+ R + +E+ + S A+ N N + NV + + + Sbjct: 313 TLIDAYCGIGTFTLPLAQRVGRAIGIEVYRSSTIQAQENAKLNRLLNVSFIPGAVETVLP 372 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLC 329 + I +DPPR G D + + ++YISC P +L Sbjct: 373 QL---------------DLIPDIILLDPPRKGCDKTVIETLLKLKPSRLVYISCQPATLA 417 Query: 330 RDLSILS--TTHTIERLALFDQFPYTRHMECGVLLV 363 RDL +L ++ + + D FP T H+E + Sbjct: 418 RDLKLLCSDGSYNLTGVQPVDFFPQTSHVESVAFIS 453 >gi|117618818|ref|YP_855360.1| 23S rRNA 5-methyluridine methyltransferase [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|143580479|sp|A0KGG9|RUMA_AERHH RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|117560225|gb|ABK37173.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 440 Score = 227 bits (580), Expect = 1e-57, Method: Composition-based stats. Identities = 82/362 (22%), Positives = 143/362 (39%), Gaps = 30/362 (8%) Query: 13 QLAEKVDRLRQMMLA---FQVPNLQ-IFRSEPIHYRMRAEFHIWHDGDDL--YHIMFDQQ 66 Q A K L + Q P L+ + E YR I D + +Q Sbjct: 100 QRAAKEAGLVSLFERLGNIQPPALEPVLGGESRAYRRVCRLAIKFDKNGRCTRVGFRRRQ 159 Query: 67 TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL 126 + + + I + ++ L+ + + R +L ++ + ++ ++ R Sbjct: 160 SNDLVEIGGCPVLAEPLSVLITPLRECLNRLKSQR-ELGHVELIQAEQGILMLLRHTGRP 218 Query: 127 LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS 186 + +L + + + L A++ L + + + + L Sbjct: 219 TE----ADRAQLIEFAKTQGIDLYLQA-ADEQIEPLHQQFAP---SYSLDGLSLAFAPGD 270 Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 F Q NA +N M+E L+ + + D +L+L+CG GNF+L LAR V+ VE V Sbjct: 271 FIQVNAPVNQRMVEQALSWLEAGKDDKVLDLFCGIGNFTLPLARQAREVVGVEGELAMVA 330 Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD 305 A N N +NN + + M RE F + +DP R G Sbjct: 331 RAEENARRNGINNARFYKADLGGDIAGMSWARE------------GFDLVLLDPARPGAF 378 Query: 306 DATVGMVQAYP-HILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLV 363 + +V+ P ++Y+SCNP +L RD +L + + RL + D FP+T H+E L Sbjct: 379 EVMEHVVKLSPRRVVYVSCNPVTLARDSQVLVKGGYRLVRLGMLDMFPHTGHLESMALFE 438 Query: 364 RK 365 RK Sbjct: 439 RK 440 >gi|149278953|ref|ZP_01885087.1| putative RNA methyltransferase [Pedobacter sp. BAL39] gi|149230232|gb|EDM35617.1| putative RNA methyltransferase [Pedobacter sp. BAL39] Length = 487 Score = 227 bits (580), Expect = 2e-57, Method: Composition-based stats. Identities = 76/403 (18%), Positives = 143/403 (35%), Gaps = 57/403 (14%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWH--- 53 Y+ QL K + + + +E +YR + E+ + Sbjct: 86 GCKWQHMGYDAQLQFKHKNVEAALQRLAKIDTSAMEPILGSAENKYYRNKLEYTFSNKRW 145 Query: 54 ---------DGDDLYHIMFDQQTK------ERMRIDYFMPGSLLINALMIEMMATIRLEP 98 + D+ M + + ID+ + N L ++ A Sbjct: 146 LNKTDMATPEDGDVALEMNALGFHVPLRFDKILDIDHCYLQADPSNNLRNQVRAYALEHG 205 Query: 99 LL-------RAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQL 151 L L + TS + + +V +++ + + L+ + + Sbjct: 206 LTFYDLRNHEGNLRNLIIRTSSTGEVMVVVVFAYVEQEQIDGLMGYLKSNFPEITSLLYI 265 Query: 152 IGRANKTKI-------CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA 204 + + I RD++ E + L ++ SF Q N+ H L + Sbjct: 266 LNQKKNDTIFDQEVLTYAGRDHIFEEM----NGLKFKIGAKSFYQTNSNQA-HELYKITK 320 Query: 205 ATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262 G GD + +LY G G + +AR +V+ VE ++E A++N N + N Sbjct: 321 EFAGFSGDELVYDLYTGAGTIANFVARSVKQVVGVEYVPTAIEDAKFNSKLNGIENTIFY 380 Query: 263 RMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILY 320 K+ +D + + DPPR+G+ V + I+Y Sbjct: 381 AGDMKDILT-----------RDFIAEHGKPDVVITDPPRAGMHADVVERLLEMEAEKIVY 429 Query: 321 ISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363 +SCN + RDL++L + + R+ D FP+T+H+E VLL Sbjct: 430 VSCNAATQARDLALLKEKYEVTRIKPVDMFPHTQHVENVVLLT 472 >gi|228473017|ref|ZP_04057774.1| 23S rRNA-methyltransferase [Capnocytophaga gingivalis ATCC 33624] gi|228275599|gb|EEK14376.1| 23S rRNA-methyltransferase [Capnocytophaga gingivalis ATCC 33624] Length = 469 Score = 227 bits (580), Expect = 2e-57, Method: Composition-based stats. Identities = 71/404 (17%), Positives = 131/404 (32%), Gaps = 58/404 (14%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-----IFRSEPIHYRMRAEFHIWHDG- 55 Y+ QL K + + + I ++P YR + EF Sbjct: 84 GCQWQHMNYQSQLHYKQKEVENNLKRLGGVTPEEILPIIGCNKPYFYRNKIEFSFSETRW 143 Query: 56 ----------------DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMA------- 92 +HI + + I NA+ ++ Sbjct: 144 LTPEEITSKEEIADRQGLGFHITGAWD--KVLDIRKCHLQEDPSNAIRNKIREYALSYGY 201 Query: 93 TIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLI 152 L + S + ++ + + + + L +I Sbjct: 202 PFYNPRSHSGWLRTMMIRISSIGEIMLVIQFLEERKEPREQLLNYLLSEFPTLTSLQYII 261 Query: 153 GRA------NKTKICL-DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA 205 ++ IC R+++ E + L ++ SF Q N+ L V+ Sbjct: 262 NNKPNDTIYDQEVICYHGRNFIYEEM----EGLRFKINAKSFFQTNSTQAYE-LYKVVRD 316 Query: 206 TKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVR 263 + G+ + +LY G G + +A+ +V+ VE ++ A+ N N ++NV Sbjct: 317 FAALTGEELVYDLYTGTGTIAQFVAKKAKKVIGVEAVPEAIADAKENAQNNQISNVDFFV 376 Query: 264 MSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYI 321 K ++ I DPPR G+ V + A ++Y+ Sbjct: 377 GDMKNVFN-----------EEFITTHGLPDVIITDPPRDGMHKDVVAQILRIAPKRVVYV 425 Query: 322 SCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 SCN + RDL++L + + R+ D FP T H+E LL K Sbjct: 426 SCNSATQARDLALLQEKYKVVRICPVDMFPQTYHIENIALLEAK 469 >gi|325915832|ref|ZP_08178131.1| 23S rRNA m(5)U-1939 methyltransferase [Xanthomonas vesicatoria ATCC 35937] gi|325537953|gb|EGD09650.1| 23S rRNA m(5)U-1939 methyltransferase [Xanthomonas vesicatoria ATCC 35937] Length = 418 Score = 227 bits (580), Expect = 2e-57, Method: Composition-based stats. Identities = 81/374 (21%), Positives = 141/374 (37%), Gaps = 27/374 (7%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRS----EPIHYRMRAEFHIWH--DG 55 L + QQ+ K L + + Q + YR + F + Sbjct: 62 GCVLQHLEESQQIVAKQRVLMDNLERIGHVSPQAVLPALVGDSWGYRRKGRFSVRRVEKK 121 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115 D + + + I + ++A + + + QI+++ D Sbjct: 122 DKTLVGFRELDPRFVADLSVCYTVIPQIGEKIP-LLAALVESMDGKRDIPQIEFIAG-DD 179 Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175 +T+ + + L + R+ + H +Q G + + + RL Sbjct: 180 AVALTIRHMQPLSERDRQAWVEFAQT-HGFAIFLQPGGVDSVQPLWPQDVPLSFRLPQWD 238 Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRV 234 L +R F Q NA +N M+ LA D +L+L+CG GNF+L LAR V Sbjct: 239 VELAFR--PLDFIQVNASLNQKMIAHALALLDARPDDRVLDLFCGLGNFTLPLARTVREV 296 Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294 + VE V A+ N N ++N + + + TQ R + F Sbjct: 297 VGVEGDAGLVARAKENAQRNGLDNAQFY---AADLTQDQRNAPWMRQ---------GFDK 344 Query: 295 IFVDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDLSIL--STTHTIERLALFDQFP 351 + +DPPRSG + + ++ + I+Y+SC+P SL RD L T+ D FP Sbjct: 345 LLLDPPRSGALEVLQQLPLKKFDRIVYVSCHPGSLARDAGYLVNEQGFTLVSAGAMDMFP 404 Query: 352 YTRHMECGVLLVRK 365 +T H+E + R+ Sbjct: 405 HTAHVESIAVFERR 418 >gi|298243496|ref|ZP_06967303.1| RNA methyltransferase, TrmA family [Ktedonobacter racemifer DSM 44963] gi|297556550|gb|EFH90414.1| RNA methyltransferase, TrmA family [Ktedonobacter racemifer DSM 44963] Length = 463 Score = 227 bits (580), Expect = 2e-57, Method: Composition-based stats. Identities = 90/383 (23%), Positives = 142/383 (37%), Gaps = 44/383 (11%) Query: 10 YEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSE---PIHYRMRAEFHIWHDGDDLYHI 61 Y QL K +RQ+++ + + I P HYR A F I G+ Sbjct: 88 YPAQLTWKAHIVRQLLVRIGKQPDALVHPTIGMPPTLPPWHYRNIALFTIGPRGEIGQK- 146 Query: 62 MFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLE-PLLRAKLFQIDYLTSQSDQA--- 117 + E + ++ + + A I R ++ Q + +A Sbjct: 147 --FTDSHEVQDLPTCPLLHPALDHIYQLVRAKIIDYFGDTRGEMIQGFTIRGAIGKASSG 204 Query: 118 ----------IVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYV 167 + TL+ + E +L L A + + R +V Sbjct: 205 NPGLINTIKAVPTLLTVHARPGSMIEDPQQLAQELMAISPAMVGVIIERVGGR-YGRVFV 263 Query: 168 -DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSL 225 E L +R +SF Q N ++E LA + + ++ L+ Y G G FS Sbjct: 264 GQEFLNDVVLGRHFRVSADSFFQVNLTQTAVLVERALAMLEPQRSEVVLDGYSGVGLFST 323 Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285 LA RVLAVE +V AR + N+ NN+ + + + + RE Sbjct: 324 FLATRAARVLAVESQPSAVMDARASSTLNNQNNITSLEGTLERVLNQLHYRRE------- 376 Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTT--HTI 341 R VDPPR+G + +Q A I Y+SC+P +L RD++ L T + + Sbjct: 377 -----RIDLALVDPPRTGCHPKALQALQTMAPRAICYVSCDPSTLARDIATLCTGGRYRL 431 Query: 342 ERLALFDQFPYTRHMECGVLLVR 364 D FP T H+EC LL R Sbjct: 432 VSAQPVDMFPQTYHIECVALLAR 454 >gi|88858179|ref|ZP_01132821.1| 23S rRNA (uracil-5)-methyltransferase [Pseudoalteromonas tunicata D2] gi|88819796|gb|EAR29609.1| 23S rRNA (uracil-5)-methyltransferase [Pseudoalteromonas tunicata D2] Length = 440 Score = 227 bits (580), Expect = 2e-57, Method: Composition-based stats. Identities = 84/373 (22%), Positives = 163/373 (43%), Gaps = 30/373 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAF----QVPNLQIFRSEPIHYRMRAEFHIWHDGDD 57 +L + QQL EK + Q+ F Q+ S P+HYR A +++D Sbjct: 89 GCSLQHLELSQQLVEKQHAVTQLFNKFAKIDQLNWQPAIESAPLHYRRSARIAVFYDKVK 148 Query: 58 LYH--IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115 + +K+ + I + A+ L P L+ + Sbjct: 149 RSFNVGFRQKGSKKIVDIGQCDVLDIRYQAVF---REFSSLLPQLKNGQAITHLQLCGVE 205 Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175 A + + R + + ++ + L G+A + ++ D ++ Sbjct: 206 HAHLVV---RHIAPLAASDIAAIERVCLTHQWLLVLQGQAGEVEL---NDLAPPSYQLSE 259 Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRV 234 ++L + ++F Q NA +N ML + +L+L+CG GNFSLV+A + V Sbjct: 260 QSLRFEFGLDNFIQVNAAVNQQMLSQAINWLALDKNEKVLDLFCGIGNFSLVMATNALAV 319 Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294 + VE + SV+ A++N A N ++N + ++ +Q M + F+ + Sbjct: 320 VGVEGVESSVQMAKHNSALNQLSNTQFYC---QDLSQDMASQAWFSE---------HYDV 367 Query: 295 IFVDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDLSILST-THTIERLALFDQFPY 352 + +DP R+G + + ++ + ILY+SC+P +L RD +++ T++++AL + FP+ Sbjct: 368 LVLDPSRTGAFEILQQLKLKRFKRILYVSCDPVTLARDSQLITQAGFTLDKIALMNMFPH 427 Query: 353 TRHMECGVLLVRK 365 T H+E VL V++ Sbjct: 428 TGHIETMVLFVKR 440 >gi|227329137|ref|ZP_03833161.1| 23S rRNA 5-methyluridine methyltransferase [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 449 Score = 227 bits (580), Expect = 2e-57, Method: Composition-based stats. Identities = 78/358 (21%), Positives = 141/358 (39%), Gaps = 30/358 (8%) Query: 13 QLAEKVDRLRQMML---AFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQT-- 67 Q + K L ++M ++P + P YR RA ++ + +M +Q+ Sbjct: 105 QQSSKTAALMRLMTRETGAELPAASLIAGTPYAYRRRARLALYFQAKEQRLLMGYRQSNS 164 Query: 68 KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLL 127 + + I + AL+ + + ++ +L ++ + +++ +V R L Sbjct: 165 HDLVDIKACPVLRPELEALLQPLRDCLSRLKAVK-RLGHVELVQAENGPLLVL----RHL 219 Query: 128 DDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSF 187 D LRD + + L A+ + V L F Sbjct: 220 DPLHSSDQQALRDFAQQQGVSVYLAPDADSLTRLQGEEPV-----YHVAGLTLAFSPRDF 274 Query: 188 TQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246 Q N +N M+ LA Q +L+L+CG GNF+L LA+ V+ VE VE Sbjct: 275 IQVNDAVNQQMVAQALAWLDVQPQDRILDLFCGMGNFTLPLAQRAASVVGVEGVTALVEK 334 Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306 R N N ++NV + ++ + + F I +DP R+G Sbjct: 335 GRENAQRNGLSNVTFFHQNLED------------DVTQQPWAAQGFDKILLDPARAGAAG 382 Query: 307 ATVGMVQAYP-HILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVLL 362 + + P ++Y+SCN +L RD +L+ + + +A+ D FP+T H+E L Sbjct: 383 VMEQITRLAPERVVYVSCNATTLARDSKVLLAAGYRLANVAMLDMFPHTGHLESMALF 440 >gi|227114811|ref|ZP_03828467.1| 23S rRNA 5-methyluridine methyltransferase [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 449 Score = 227 bits (580), Expect = 2e-57, Method: Composition-based stats. Identities = 77/358 (21%), Positives = 140/358 (39%), Gaps = 30/358 (8%) Query: 13 QLAEKVDRLRQMMLA---FQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQT-- 67 Q + K L ++M ++P + P YR RA ++ + +M +Q+ Sbjct: 105 QQSSKTAALVRLMTRETGAELPEASLIAGTPYAYRRRARLALYFQAKEQRLLMGYRQSNS 164 Query: 68 KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLL 127 + + I + AL+ + + ++ +L ++ + +++ +V R L Sbjct: 165 HDLVDIKACPVLRPELEALLQPLRDCLSRLKAVK-RLGHVELVQAENGPLLVL----RHL 219 Query: 128 DDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSF 187 D LRD + + L A+ + V L F Sbjct: 220 DPLHSSDQQALRDFAQQQGVSVYLAPDADSLTCLQGEEAV-----YHVAGLTLAFSPRDF 274 Query: 188 TQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246 Q N +N M+ L Q +L+L+CG GNF+L LA+ V+ VE VE Sbjct: 275 IQVNDAVNQQMVAQALTWLDVQPQDRILDLFCGMGNFTLPLAQRAASVVGVEGVTALVEK 334 Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306 R N N ++NV + ++ + + F I +DP R+G Sbjct: 335 GRENAQRNGLSNVTFFHQNLED------------DVTQQPWAAQGFDKILLDPARAGAAG 382 Query: 307 ATVGMVQAYP-HILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVLL 362 + + P ++Y+SCN +L RD +L+ + + +A+ D FP+T H+E L Sbjct: 383 VMEQITRLAPKRVVYVSCNATTLARDSKVLLAAGYRLANVAMLDMFPHTGHLESMALF 440 >gi|150021420|ref|YP_001306774.1| RNA methyltransferase [Thermosipho melanesiensis BI429] gi|149793941|gb|ABR31389.1| RNA methyltransferase, TrmA family [Thermosipho melanesiensis BI429] Length = 435 Score = 227 bits (580), Expect = 2e-57, Method: Composition-based stats. Identities = 83/380 (21%), Positives = 155/380 (40%), Gaps = 36/380 (9%) Query: 2 SGTLLIDQYEQQLAEKVD-RLRQMML--AFQVPNLQIFRSE-PIHYRMRAEFHIWHDGDD 57 L +Y++QL K L Q++ + N++I RS +YR++ EF + + Sbjct: 76 GCDFLDLKYDKQLEIKKQVFLEQLLRISGLNIKNVEIERSNFEYNYRLKMEFSVTRNKKL 135 Query: 58 LYHIMFDQQTKERMRIDYFMPGSLLINALM---IEMMATIRLEPLL--RAKLFQIDYLTS 112 + +++ + I + +N ++ E++ + L I S Sbjct: 136 GFK---RKKSNRVVEIKKCLIAPKPMNQVLDVLPEILDAFNVSVYNGRNGVLKNIVLRYS 192 Query: 113 QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY----VD 168 + +V + ++ A L + + ++ +K + L Y + Sbjct: 193 PRGELMVVFVTKMENFKDAKKIANVLSKQVSLITSVVHVMNSNDK--VVLRGPYRILKGE 250 Query: 169 ERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVL 227 ++ ++ +F Q N + M++++ ++ L+L+ G G FS+ L Sbjct: 251 GVISYEFSWEKFQVPPTAFFQNNFYVTEKMIDYLTKNLDLNGNEVVLDLFSGLGTFSIRL 310 Query: 228 ARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDI 287 A V+AV SV+A R N N + N+K + + EF + + Sbjct: 311 ALLSKFVVAVGSNHVSVKAGRANANINGLRNIKFIESDAYEFLKNSEK------------ 358 Query: 288 HSYRFKTIFVDPPRSGLDDATVG--MVQAYPHILYISCNPDSLCRDLSILSTTHTIERLA 345 F + VDPPRSGL +++ I Y+SCNP + RDL +L + I+ + Sbjct: 359 ---NFDVLVVDPPRSGLGKEMCNEILLRKPEKIAYVSCNPSTFSRDLKMLMELYEIKSIK 415 Query: 346 LFDQFPYTRHMECGVLLVRK 365 LFD FP T H+E +L RK Sbjct: 416 LFDMFPQTYHIESIAILARK 435 >gi|47169345|pdb|1UWV|A Chain A, Crystal Structure Of Ruma, The Iron-Sulfur Cluster Containing E. Coli 23s Ribosomal Rna 5-Methyluridine Methyltransferase Length = 433 Score = 227 bits (579), Expect = 2e-57, Method: Composition-based stats. Identities = 79/336 (23%), Positives = 130/336 (38%), Gaps = 27/336 (8%) Query: 34 QIFRSEPIHYRMRAEFHIWH--DGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMM 91 ++ P YR RA + + L + + + + + + AL+ ++ Sbjct: 118 EVIADVPWGYRRRARLSLNYLPKTQQLQXGFRKAGSSDIVDVKQCPILAPQLEALLPKVR 177 Query: 92 ATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQL 151 A + R L ++ + + S + L + L A RE R H+ + L Sbjct: 178 ACLGSLQAXRH-LGHVELVQATSG-TLXILRHTAPLSSADREKLERFS---HSEGLDLYL 232 Query: 152 IGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQ 210 + + E L F Q NAG+N + L + Sbjct: 233 APDSEILETVSG-----EXPWYDSNGLRLTFSPRDFIQVNAGVNQKXVARALEWLDVQPE 287 Query: 211 GDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270 +L+L+CG GNF+L LA V+ VE VE + N N + NV + +E Sbjct: 288 DRVLDLFCGXGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEE-- 345 Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP-HILYISCNPDSLC 329 + F + +DP R+G +++ P I+Y+SCNP +L Sbjct: 346 ----------DVTKQPWAKNGFDKVLLDPARAGAAGVXQQIIKLEPIRIVYVSCNPATLA 395 Query: 330 RDL-SILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 RD ++L +TI RLA D FP+T H+E VL R Sbjct: 396 RDSEALLKAGYTIARLAXLDXFPHTGHLESXVLFSR 431 >gi|288574832|ref|ZP_06393189.1| RNA methyltransferase, TrmA family [Dethiosulfovibrio peptidovorans DSM 11002] gi|288570573|gb|EFC92130.1| RNA methyltransferase, TrmA family [Dethiosulfovibrio peptidovorans DSM 11002] Length = 454 Score = 227 bits (579), Expect = 2e-57, Method: Composition-based stats. Identities = 83/392 (21%), Positives = 141/392 (35%), Gaps = 40/392 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ--IFRSEP--IHYRMRAEFHIWHDGDD 57 L Y+ QL K +R M + + P YR +A F + + Sbjct: 78 GCQLQHGSYDLQLEIKAKSVRDAMERIGRMRVDRLVCHPSPMQWGYRNKASFPVRSENGG 137 Query: 58 LYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLE---------------PLLRA 102 F + + ID + L ++ T+ E LLR Sbjct: 138 EI-GFFRSGSHKLAPIDGCPVLMPHVEKLYVDFRDTVMPELKRNGVPFYDERRHKGLLRH 196 Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162 +F+ + S A+VT + + RL++ + + +I Sbjct: 197 MVFRGNREGSLLALAVVTSLRDCRGKELLERSLARLKETTQTSFSGVWNENSSRGNRILG 256 Query: 163 DRD---YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCG 219 +R + D +T +F Q N + + G ++ELY G Sbjct: 257 ERSSTIWGDGVITEKISNYDLSYDGTAFFQVNPFQAERLFLRASSIVAERGGAVVELYAG 316 Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279 G +++LA+ VLAVE P++E N++ N ++NVK + +++ + M Sbjct: 317 VGALTVILAKAAKTVLAVEEWAPAIERLLENVSRNGLDNVKGICNRAEDTVRTMVEA--- 373 Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRD-LSILS 336 + I VDPPR G + V + ++Y+SCNP +L RD ++S Sbjct: 374 -----------KPDVIVVDPPRGGCASEVLDAVTESSADMLVYVSCNPSTLARDGAKLVS 422 Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVRKPSG 368 + L FD FP T H+E R G Sbjct: 423 DGWELATLECFDLFPQTVHVETLASFKRTARG 454 >gi|312881712|ref|ZP_07741489.1| 23S rRNA 5-methyluridine methyltransferase [Vibrio caribbenthicus ATCC BAA-2122] gi|309370602|gb|EFP98077.1| 23S rRNA 5-methyluridine methyltransferase [Vibrio caribbenthicus ATCC BAA-2122] Length = 439 Score = 227 bits (579), Expect = 2e-57, Method: Composition-based stats. Identities = 80/373 (21%), Positives = 150/373 (40%), Gaps = 32/373 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAF--QVPNLQ-IFRSEPIHYRMRAEFHIWHDGDDL 58 QL K L ++M F V +L+ + + E YR RA I D Sbjct: 90 GCNQQHLSLTDQLRYKQKTLIELMSKFAGGVVSLEPVVQGETKGYRRRARISIKFDRKSQ 149 Query: 59 Y--HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116 + + + I + + ++AL++ + + + + ++ + + Sbjct: 150 QLNFGFRKKSSSQIANITHCPILDVSLDALLLPLYE-LFKQFTAPDSIGHLELVKGDNTT 208 Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGR 176 IV R + + L K + L+ + + ER + Sbjct: 209 VIVI----RHIKPLHPKDQGSLEAFASENKLSLYLMPDTQTIERVVG-----ERAYYSEG 259 Query: 177 TLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVL 235 + N+F Q N +N M++ L+ +L+L+CG GNFSL +A+ V+ Sbjct: 260 GVRIPFEPNNFIQVNQMVNKAMIDQALSWLDINQSDRVLDLFCGLGNFSLPIAQRVKSVI 319 Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295 VE V+ A N NH+NN + + + +E + +E +F + Sbjct: 320 GVEGIDVMVKKASENAKLNHLNNAEFFQANLEESSTKFSWAQE------------KFDKV 367 Query: 296 FVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPY 352 +DP R+G + + ++ ++Y+SCNP +L RD L + + +ERL + D FP+ Sbjct: 368 LLDPARAGAS-VIIDQISSFGASKVVYVSCNPATLARDSQSLIAQGYKLERLGMLDMFPH 426 Query: 353 TRHMECGVLLVRK 365 T H+E L V++ Sbjct: 427 TSHLESMALFVKE 439 >gi|293557121|ref|ZP_06675675.1| RNA methyltransferase, TrmA family [Enterococcus faecium E1039] gi|291600690|gb|EFF30988.1| RNA methyltransferase, TrmA family [Enterococcus faecium E1039] Length = 267 Score = 227 bits (579), Expect = 2e-57, Method: Composition-based stats. Identities = 61/276 (22%), Positives = 117/276 (42%), Gaps = 24/276 (8%) Query: 97 EPLLRAKLFQIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLI 152 E LR + + + + + +VT + + +A E + + + + Sbjct: 6 EGQLRHIIIRRGHYSHEMMVVLVTRKEKFFKSKEIAEAIHEELPEVVSVIQNINEEKTNV 65 Query: 153 GRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD 212 +K K+ RDY++++L YR SF Q N ++ + + + + D Sbjct: 66 ILGDKEKVLYGRDYIEDQLLGK----TYRISAKSFYQVNTQQAEYLYQTAIEFAELDKKD 121 Query: 213 -LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271 +++ Y G G L LA D+V +E+ ++E A++N N + NV +++ + Sbjct: 122 IVIDAYSGIGTIGLSLADRVDKVYGMEVIPEAIEDAQFNALNNKIENVHYEVGKAEKVMK 181 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLC 329 + + I VDPPR GLD + ++ P I+YISCNP + Sbjct: 182 KWQE------------KGIKPSVIVVDPPRKGLDHHFIESAIEMSPERIVYISCNPATFA 229 Query: 330 RDLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364 RD + + + ++++ D FP T H+E V+ Sbjct: 230 RDTKLFAEAGYAVKKVQPVDLFPQTHHIELVASFVK 265 >gi|300775961|ref|ZP_07085820.1| 23S rRNA (uracil-5-)-methyltransferase [Chryseobacterium gleum ATCC 35910] gi|300505094|gb|EFK36233.1| 23S rRNA (uracil-5-)-methyltransferase [Chryseobacterium gleum ATCC 35910] Length = 470 Score = 227 bits (579), Expect = 2e-57, Method: Composition-based stats. Identities = 67/398 (16%), Positives = 138/398 (34%), Gaps = 46/398 (11%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFHIWHDGD 56 YE+QL K + + + + + E YR + EF + Sbjct: 85 GCKWQNMSYEKQLDFKQEEVYNNIKRIGGIDDFETVPILGSEEQYFYRNKMEFSFSNARW 144 Query: 57 DLYHIM---FDQQTK------------ERMRIDYFMPGSLLINALMIEMMATIRLEPL-- 99 + + + +K + + + NA+ + + L Sbjct: 145 LTQYEISSEENFGSKDALGFHIPGMWSKILDLKECFLQEDPSNAIRLAVKEYGVNNGLDF 204 Query: 100 -----LRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGR 154 L + + + +V +R + + L + K + I Sbjct: 205 FDVRNQEGFLRTLMMRQNSKGEWMVLFQLYREEKENREKLFEFLLEKFPQIKTLVYAIN- 263 Query: 155 ANKTKICLDRD----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ 210 + + D D + + L L ++ SF Q N + + L Sbjct: 264 SKQNDSIYDLDINVYFGEGYLMEEMDGLQFKIGPKSFFQTNYKQALELYRKTLEFADLKG 323 Query: 211 GDLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269 +++ +LY G G + +AR+ +V+ +E + +++AA + A N + N K+ Sbjct: 324 DEVVYDLYTGTGTIAQYVARNAKQVIGIESVQEAIDAAIEHAALNGLTNTTFYCGDMKDI 383 Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDS 327 + + + + DPPR G+ V + ++Y+SCN + Sbjct: 384 FND-----------EFMANHPKADVLITDPPRDGMHQKVVEQILKLSPEKVVYVSCNSAT 432 Query: 328 LCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 RDL+++ +T+ ++ D FP T H+E LLV+K Sbjct: 433 QARDLALMKDHYTLVKILPVDMFPQTHHVENIALLVKK 470 >gi|209525609|ref|ZP_03274147.1| RNA methyltransferase, TrmA family [Arthrospira maxima CS-328] gi|209493942|gb|EDZ94259.1| RNA methyltransferase, TrmA family [Arthrospira maxima CS-328] Length = 509 Score = 227 bits (579), Expect = 2e-57, Method: Composition-based stats. Identities = 73/396 (18%), Positives = 136/396 (34%), Gaps = 53/396 (13%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLA----FQVPNLQIFRSE-PIHYRMRAEFHIWHDG- 55 Y+ QL K + + + P + S + YR + + + Sbjct: 130 GCQWQHIDYDFQLEAKRGLVVNALTKMGGFIEPPVAPVLPSPQSLAYRNKVTYPLRLSST 189 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLL-----------RAKL 104 + + + + + ++ +N L+ + I+ L R Sbjct: 190 GQVQAGYYQKGSHRLINLNQCPVQDQRLNPLLANIKQDIQNRGWLVYDEQQHTGTIRHLS 249 Query: 105 FQIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKI 160 F+I T + +V L + D W + +L T Sbjct: 250 FRIGRRTGEILLTLVVKDNKLPQLKEQADIWLQQYPQLVGVCLNINSDRTNAILGKNTHC 309 Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCG 219 + + Y+ E L R ++F Q N +L + + ++L + YCG Sbjct: 310 LIGKPYIHEIFA----DLKLRLTSDNFFQVNTEAAESLLSAISSELNLQGHEILVDAYCG 365 Query: 220 NGNFSLVLARHFD--------RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271 G F+L LA+ R + +E +VE A N N +N+V+ + ++ Sbjct: 366 IGTFTLPLAKQLGQNFPPGEIRAIGLESQAGAVEQAISNADLNDINHVEFRVGNVQKLLP 425 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLC 329 + ++ + +DPPR G D + + I+YISC P +L Sbjct: 426 EI---------------PFQPDIVVLDPPRQGCDRTVIQTLLNLQPQRIVYISCRPVTLA 470 Query: 330 RDLSILSTT--HTIERLALFDQFPYTRHMECGVLLV 363 RDL +L + + ++ D FP T H+EC L Sbjct: 471 RDLQLLCENGIYQLTKVQPADFFPQTSHVECAAFLT 506 >gi|218283356|ref|ZP_03489390.1| hypothetical protein EUBIFOR_01979 [Eubacterium biforme DSM 3989] gi|218215910|gb|EEC89448.1| hypothetical protein EUBIFOR_01979 [Eubacterium biforme DSM 3989] Length = 406 Score = 227 bits (579), Expect = 2e-57, Method: Composition-based stats. Identities = 84/386 (21%), Positives = 151/386 (39%), Gaps = 38/386 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLA--FQVPNLQIFR-SEPIHYRMRAEFHIWHDGDDL 58 +LL + Q +K + ++ +V + HYR + D + Sbjct: 11 GCSLLKLKPSMQADKKKKDVEVLVEKAHLKVRVGDVHMAKNDTHYRNKVIVGFAKDKGKV 70 Query: 59 YHIMFDQQTKERMRIDYFMPGSLLINA-----------LMIEMMATIRLEPLLRAKLFQI 107 Y ++ + ++ + + L+N + +E+ LLR L + Sbjct: 71 YSGLYASHSHRVVKTENCIMQPKLVNEIINKITELVGSMKLELYNERTGTGLLRHVLIRW 130 Query: 108 DYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD-- 165 + ++D+ +V + + + + + L K +Q I KT I L + Sbjct: 131 GH---KTDEVMVVFVTSQKMFPSRKNMVRVLTSEFPQIKTIVQNINP-RKTSIVLQDEAI 186 Query: 166 --YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGN 222 Y + + L NSF Q ++ + + D +L+ YCG G Sbjct: 187 VLYGNGMIHDELCGLDIAFSHNSFYQIHSEQCEVLYGLAKKMLDLKETDTVLDTYCGVGT 246 Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282 L + +V+ VE+ ++E A+YN N + N++ V M S EF + R+ Sbjct: 247 IGLTMTDSCKKVMGVEVNPDAIENAKYNAKQNKIKNIEFVAMDSTEFMRQARK------- 299 Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSIL-STTH 339 + R+ I +DPPR+G + A ILYISC+P + RDL+ + Sbjct: 300 -----YHNRYDAIILDPPRAGTTKDFIECATALNPRKILYISCDPRTQVRDLNQFRKQGY 354 Query: 340 TIERLALFDQFPYTRHMECGVLLVRK 365 +L L D FPYT H+E +L +K Sbjct: 355 VTNKLELVDLFPYTDHIESVCVLEKK 380 >gi|218248804|ref|YP_002374175.1| TrmA family RNA methyltransferase [Cyanothece sp. PCC 8801] gi|257061863|ref|YP_003139751.1| RNA methyltransferase, TrmA family [Cyanothece sp. PCC 8802] gi|218169282|gb|ACK68019.1| RNA methyltransferase, TrmA family [Cyanothece sp. PCC 8801] gi|256592029|gb|ACV02916.1| RNA methyltransferase, TrmA family [Cyanothece sp. PCC 8802] Length = 461 Score = 227 bits (579), Expect = 2e-57, Method: Composition-based stats. Identities = 72/397 (18%), Positives = 135/397 (34%), Gaps = 57/397 (14%) Query: 2 SGTL---LIDQYEQQLAEKVDRLRQMMLAFQ----VPNLQIFRSEP-IHYRMRAEFHIWH 53 G + D Y Q K + + Q + P + I S + YR + + + Sbjct: 82 GGCQWQHIDDSY--QRTVKQNHVIQSLERIGGFSDPPVVPILSSPEVLGYRNKVTYPLGR 139 Query: 54 DG-DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-----------LR 101 + + + + + ++ +N L+ ++ I + LR Sbjct: 140 SATGKVQGGYYRRNSHHLVNLNQCPIQDARLNPLLADIKKDIEEQGWSIYDEENHQGRLR 199 Query: 102 AKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAI----RLRDALHARKYQIQLIGRANK 157 F+I T + +V+ + + L + + Sbjct: 200 HLSFRIGRRTGEILLTLVSTSKTLQNLPEQAQTWLDRYPNLVGVALNHNPNPGNVIFGEE 259 Query: 158 TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGI-QGDLLEL 216 T R Y+ E L ++F Q N + ++ +++ Sbjct: 260 TLPIAGRPYISEIFA----GLELHLGSDTFFQINTEAAEILFNTLIEQLDLTGTETVIDA 315 Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276 YCG G FSL LA+ +V+ +E+ S+ AR N N ++NV + + + + Sbjct: 316 YCGIGTFSLPLAQRVKQVIGLEVNPNSISQARKNAQLNGIDNVSFLAGTVETLLPQL--- 372 Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDA-------TVGMVQA--YPHILYISCNPDS 327 S I +DPPR G D +++ +++YISC P + Sbjct: 373 ------------SCSPDIILLDPPRKGCDHQRRKDEATVTEILRNLQPSYLVYISCQPPT 420 Query: 328 LCRDLSILSTT--HTIERLALFDQFPYTRHMECGVLL 362 + RDL L + + + D FP T H+E LL Sbjct: 421 MARDLQKLCQGNLYDLLWVQPMDFFPQTAHVESVALL 457 >gi|293401173|ref|ZP_06645317.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291305299|gb|EFE46544.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 438 Score = 227 bits (579), Expect = 2e-57, Method: Composition-based stats. Identities = 76/377 (20%), Positives = 139/377 (36%), Gaps = 26/377 (6%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL----QIFRSEP-IHYRMRAEFHIWHDGD 56 L+I +Y +QL K D L+Q ++ + N + S YR + + + + Sbjct: 73 GCPLMIARYPRQLEYKKDVLKQSLIKYAQVNPRKIQNVLPSADIFGYRNQFKMPCAMEEN 132 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116 L +F + + I + + +M + + L Q + + + Sbjct: 133 RLGSGLFMPNSNYFIDIRRCFVHEDELEKMRARIMDILNADGYLGYDHRQKSGIRNLVVR 192 Query: 117 AIVTLIYHRLLDDAWRECAIRLRD--ALHARKYQIQLIGRANKTKICLDRDYV----DER 170 ++ + L Q I KT + ++ Sbjct: 193 GFDNRYQCTIITGEDELLPQTIDKLMRLPGMYSLWQSIHTIKKTPEIFGPKMIFLAGEKL 252 Query: 171 LTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARH 230 L + L SF Q N + + + + G ++E Y G G SL L Sbjct: 253 LPLHLDGLDLEISPRSFFQLNTKQAIQLYRTIASMISGNHEFIVEAYSGIGAISLYLKDK 312 Query: 231 FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY 290 ++ +E K +V A N N +V V + + ++R Sbjct: 313 AKEIIGIESIKDAVVNANRNAKKNGCAHVSFVCDDAANKLVYLSKKRTI----------- 361 Query: 291 RFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILSTTHTIERLALFD 348 + VDPPRSGLDDA + + I+Y+SCN +L ++L++L + + +E++ D Sbjct: 362 --DVLVVDPPRSGLDDAMLECILRSKIKEIVYVSCNAATLGKNLAVLQSCYHVEKVVPID 419 Query: 349 QFPYTRHMECGVLLVRK 365 FP+T H+E L+ RK Sbjct: 420 MFPHTPHVETVCLMSRK 436 >gi|116513673|ref|YP_812579.1| tRNA (uracil-5-)-methyltransferase related enzyme [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|116092988|gb|ABJ58141.1| 23S rRNA m(5)U-1939 methyltransferase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 460 Score = 227 bits (579), Expect = 2e-57, Method: Composition-based stats. Identities = 70/386 (18%), Positives = 137/386 (35%), Gaps = 40/386 (10%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHDGDD 57 L Y QL K D L + + + I + HYR +A++ I + Sbjct: 91 LAHLSYAGQLKFKKDNLVSALEKYHPRGYKNYKIKNTIPAPDQWHYRAKAQYQIERENHH 150 Query: 58 LYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLFQ 106 + ++ + + + + S LI L + + R P ++ + + Sbjct: 151 VSLGLYAPNSHQLIDLPEMPTQSEDTQATERAIRDLIIKLRVPIANRRRNLPGVKTIVVR 210 Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDAL---HARKYQIQLIGRANKTKICLD 163 + + ++T+ + + +RL + NKT Sbjct: 211 QAEASQEMQVTLITVGHKLNNLLQLADEIMRLPKVVSVYQNETDWQNPQVWGNKTSKLRG 270 Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGN 222 ++ V E + L +F Q N + L L++ Y G G Sbjct: 271 KNQVTEEIMGKKFAL----SPRAFFQLNPVQTATLYSEALKLLSLTPDMTLIDAYSGVGT 326 Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282 ++ A +V+ +E +V A++N+ NHV N + ++ S ++ ++ + Sbjct: 327 LGILAADQVKQVVGIESIPEAVLDAQHNVELNHVRNAEYLQGSVEKLLPRLKED------ 380 Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLSILSTTHT 340 + VDPPR+GL + + + +YISCNP +L +DL +L + Sbjct: 381 ------GLPIDALIVDPPRTGLAKSLIKTLLRVKPASFVYISCNPSTLAQDLVLLGEAYD 434 Query: 341 IERLALFDQFPYTRHMECGVLLVRKP 366 + + D P T EC L + Sbjct: 435 VRVIENVDMLPQTPRCECIAKLTLRK 460 >gi|104773677|ref|YP_618657.1| methyltransferase [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|103422758|emb|CAI97391.1| Methyltransferase [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] Length = 460 Score = 227 bits (579), Expect = 2e-57, Method: Composition-based stats. Identities = 70/386 (18%), Positives = 136/386 (35%), Gaps = 40/386 (10%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHDGDD 57 L Y QL K D L + + + I + HYR +A++ I + Sbjct: 91 LAHLSYAGQLKFKKDNLVSALEKYHPRGYKNYKIKNTIPAPDQWHYRAKAQYQIERENHH 150 Query: 58 LYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLFQ 106 + ++ + + + + S LI L + + R P ++ + + Sbjct: 151 VSLGLYAPNSHQLIDLPEMPTQSEDTQATERAIRDLIIKLRVPIANRRRNLPGVKTIVVR 210 Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDAL---HARKYQIQLIGRANKTKICLD 163 + + ++T+ + + +RL + NKT Sbjct: 211 QAEASQEMQVTLITVGHKLNNLLQLADEIMRLPKVVSVYQNETDWQNPQVWGNKTSKLRG 270 Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGN 222 ++ V E + L +F Q N + L L++ Y G G Sbjct: 271 KNQVTEEIMGKKFAL----SPRAFFQLNPVQTATLYSEALKLLSLTPDMTLIDAYSGVGT 326 Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282 ++ A +V+ +E +V A++N+ NHV N + + S ++ ++ + Sbjct: 327 LGILAADQVKQVVGIESIPEAVLDAQHNVELNHVRNAEYLHGSVEKLLPRLKED------ 380 Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLSILSTTHT 340 + VDPPR+GL + + + +YISCNP +L +DL +L + Sbjct: 381 ------GLPIDALIVDPPRTGLAKSLIKTLLRVKPASFVYISCNPSTLAQDLVLLGEAYD 434 Query: 341 IERLALFDQFPYTRHMECGVLLVRKP 366 + + D P T EC L + Sbjct: 435 VRVIENVDMLPQTPRCECIAKLTLRK 460 >gi|312888540|ref|ZP_07748110.1| 23S rRNA m(5)U-1939 methyltransferase [Mucilaginibacter paludis DSM 18603] gi|311298987|gb|EFQ76086.1| 23S rRNA m(5)U-1939 methyltransferase [Mucilaginibacter paludis DSM 18603] Length = 475 Score = 227 bits (578), Expect = 2e-57, Method: Composition-based stats. Identities = 76/393 (19%), Positives = 146/393 (37%), Gaps = 49/393 (12%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFHIW-------HDGDD 57 Y+ QL K + + + S+ ++YR + E+ + D Sbjct: 93 YDAQLVYKQKSVIDSLQRLAKVELTGLIPILPSSQTVYYRNKLEYTFSNKRWLYDGENRD 152 Query: 58 LYHIMFDQQTK------ERMRIDYFMPGSLLINALMIEMMATIRLEPL----LRAKLFQI 107 M + + +++ + N + + R L LRA + Sbjct: 153 DNVDMNALGFHVPGRFDKILEVNHCYLQADPSNQIRNRIGDYAREHQLSFYDLRAHEGAL 212 Query: 108 DYL----TSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRAN-----KT 158 L ++ + + +V +++ + + + +I + Sbjct: 213 RNLVIRTSATTGELMVIVVFAYADQEQIDHLMAFVAAEFPQISSLLYIINQKKNDTIFDQ 272 Query: 159 KICLDR--DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LL 214 ++ R +Y+ E + G+ + +R SF Q N+ + + E + G +G + Sbjct: 273 EVIAYRGPEYIHEEMPSGGKMIRFRIGAKSFYQTNSIQALRLYE-ITRDFAGFKGHELVY 331 Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274 +LY G G + +A H V+ VE ++E A+ N N + N K K+ A Sbjct: 332 DLYTGAGTIANFIAAHVKEVVGVEYVPQAIEDAKINSGINGITNTKFFAGDMKDVLVA-- 389 Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDL 332 D + I DPPR+G+ V + I+Y+SCN + RDL Sbjct: 390 ---------DFVAEHGKPDVIITDPPRAGMHPDVVNRLMEIEAEKIVYVSCNAATQARDL 440 Query: 333 SILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 +L + + ++ D FP+T+H+E VLLV K Sbjct: 441 LVLKEKYDVMKIQPVDMFPHTQHVENVVLLVLK 473 >gi|298242700|ref|ZP_06966507.1| RNA methyltransferase, TrmA family [Ktedonobacter racemifer DSM 44963] gi|297555754|gb|EFH89618.1| RNA methyltransferase, TrmA family [Ktedonobacter racemifer DSM 44963] Length = 442 Score = 227 bits (578), Expect = 3e-57, Method: Composition-based stats. Identities = 84/388 (21%), Positives = 148/388 (38%), Gaps = 75/388 (19%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAF----QVPNLQIFRSE-PIHYRMRAEFHIWHDGD 56 L QYE+QL K + + +++ Q P L+ E P +YR + F I +G Sbjct: 110 GCQLQHLQYERQLTWKREMVGELLREIGHFEQPPLLETVACEIPWNYRNQMRFSINREGQ 169 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116 + + T+ + + IN + + P + + + T Q Sbjct: 170 P---GLTARDTRRVLPLVSCPIAHERINRALTVLSQFENPRPQV---IVRYGVGTGQ--- 220 Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGR 176 + L + + + L IC DE + Sbjct: 221 --MLLQPQQPEEVQQQLQEAGLT--------------------IC------DETIEEKLG 252 Query: 177 TLIYRQIENSFTQPNAGINVHMLEWVL--------AATKGIQGDLLELYCGNGNFSLVLA 228 I+R +SF Q N M+ VL A Q +++ YCG G F+L++A Sbjct: 253 GKIFRIRPSSFFQTNTPQAEKMVRMVLDGLLAHRPAEKDPAQLTIVDAYCGVGTFALLMA 312 Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288 HF R++A+E + ++ A +N NN++I++ ++ + Sbjct: 313 HHFGRIIAIEESPSAIRDAHWN--TRDTNNIEILKGKVEDVLPGL--------------- 355 Query: 289 SYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILSTT---HTIER 343 S + +DPPR+G + + YP ++Y+SC P +L RDL +L + + Sbjct: 356 SAQVDGFVIDPPRAGCQPVVLETLLRYPVERVVYVSCEPSTLARDLDVLCHGDETYQLVS 415 Query: 344 LALFDQFPYTRHMECGVLLVRKPSGWHQ 371 + D FP T H+EC +L R H+ Sbjct: 416 VQPLDMFPQTAHIECVAVLER---NKHE 440 >gi|167623152|ref|YP_001673446.1| 23S rRNA 5-methyluridine methyltransferase [Shewanella halifaxensis HAW-EB4] gi|226725389|sp|B0TK00|RUMA_SHEHH RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|167353174|gb|ABZ75787.1| RNA methyltransferase, TrmA family [Shewanella halifaxensis HAW-EB4] Length = 445 Score = 227 bits (578), Expect = 3e-57, Method: Composition-based stats. Identities = 81/374 (21%), Positives = 140/374 (37%), Gaps = 28/374 (7%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ----VPNLQIFRSEPIHYRMRAEFHIWHDGDD 57 L + Q K L ++ F HYR RA W D + Sbjct: 91 GCDLQHLDIDAQRKHKASTLVDLVNKFAQTQAGEVCDTLSDNAWHYRRRARLATWFDKNT 150 Query: 58 LYH--IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115 + + + + I + ++AL+ ++ L L K LT + Sbjct: 151 KHISLGFRASSSSDVVEIQSCAVLAEPLSALIPDL--AFMLNQLSGKKALGHVELTQADN 208 Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175 V L + L D + RL + + + I L+ + L+ Sbjct: 209 GNFVVLRVTKALSD---KDKARLVEFANKHQV-IVLLQDDDAQCEHLNGAGEQPYYGFDD 264 Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRV 234 + +F Q NA +N M+ + + +L+L+CG GNFSL LA+ V Sbjct: 265 NQVKLNFSPGNFIQVNAQVNQAMVSQAVEWLSPKADERVLDLFCGIGNFSLPLAKDGAEV 324 Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294 + VE + VE AR N + ++ V + + +E ++ Sbjct: 325 IGVEGVQAMVEQARINAKQSGLDKVSFYHAD---LSADLSKEPWLGKV----------DK 371 Query: 295 IFVDPPRSGLDDATVGMVQAYPH-ILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPY 352 + +DP R+G ++ + + P ++Y+SCNP SL RD IL + ++++ L D FP Sbjct: 372 MLIDPARAGAYESMQSLKKLKPKALVYVSCNPASLARDSEVILKQGYQLKKIGLVDMFPQ 431 Query: 353 TRHMECGVLLVRKP 366 T H+E L K Sbjct: 432 THHLESMALFELKN 445 >gi|156932729|ref|YP_001436645.1| 23S rRNA 5-methyluridine methyltransferase [Cronobacter sakazakii ATCC BAA-894] gi|226725380|sp|A7MQZ8|RUMA_ENTS8 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|156530983|gb|ABU75809.1| hypothetical protein ESA_00518 [Cronobacter sakazakii ATCC BAA-894] Length = 432 Score = 227 bits (578), Expect = 3e-57, Method: Composition-based stats. Identities = 79/357 (22%), Positives = 135/357 (37%), Gaps = 30/357 (8%) Query: 13 QLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ--QTKER 70 Q K L +MM ++ YR RA + M + + + Sbjct: 100 QQRSKAQALCRMMKR---EVDEVISGPAWGYRRRARLSLNFTPRKPGLQMGFRKAGSNDL 156 Query: 71 MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDA 130 + + + AL+ ++ + +R L ++ + S +V R L Sbjct: 157 VDVHRCPVLVPRLEALLPKLRDCLSSLDGVRH-LGHVELVDVTSGPLMVL----RHLKPL 211 Query: 131 WRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQP 190 +L H+ + L +++ + E L F Q Sbjct: 212 SAADREKLECFSHSEGVALYLAPQSDTLEHLNG-----EMPWYESDGLRLTFSPRDFIQV 266 Query: 191 NAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249 N +N M+ L + G+ +L+L+CG GNF+L LAR + V+ VE VE Y Sbjct: 267 NDAVNQQMVARALEWLEIQPGERVLDLFCGMGNFTLPLARRAESVVGVEGVAALVEKGDY 326 Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309 N N + NV + + +E + F + +DP R+G Sbjct: 327 NAGLNALKNVTFFQHNLEE------------DVTRQPWAQQGFDKVLLDPARAGAAGVMQ 374 Query: 310 GMVQAYP-HILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 +V+ P ++Y+SCNP +L RD +L+ + RLA+ D FP+T H+E L R Sbjct: 375 HIVKLKPRRVVYVSCNPATLMRDSETLLAAGYRTVRLAMLDMFPHTGHLESMALFER 431 >gi|237755943|ref|ZP_04584532.1| 23S rRNA (uracil-5-)-methyltransferase [Sulfurihydrogenibium yellowstonense SS-5] gi|237691892|gb|EEP60911.1| 23S rRNA (uracil-5-)-methyltransferase [Sulfurihydrogenibium yellowstonense SS-5] Length = 419 Score = 227 bits (578), Expect = 3e-57, Method: Composition-based stats. Identities = 78/375 (20%), Positives = 155/375 (41%), Gaps = 40/375 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWHDGDD 57 YE QL K + L+ +L +I EP YR +A+ D Sbjct: 73 GCDFQHTTYENQLLLKKEILKDQLLRIGKIETEIEKIIPSKEPFRYRNKAQLKF----DG 128 Query: 58 LYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQA 117 + + + + + +DY + I L+ + + ++ + I ++ ++ Sbjct: 129 KNLGFYKKDSNDLVNVDYCLLLKEDIEKLLNPLKKFLIKYAIMPS---NIHIFSNTKEEK 185 Query: 118 IVTLIYHRLLDDAWRECAIRLRDALHAR-KYQIQLIGRANKTKI--CLDRDYVDERLTVA 174 ++ + LD++ + + +I+ IG K K L D V E + Sbjct: 186 LIRFEF---LDESQFSNIVYDMNIFREEIDGKIKGIGFYAKHKRYSLLGEDVVFENVG-- 240 Query: 175 GRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNFSLVLARHFDR 233 +R +SF Q N ++++ V++ K +++ YCG G ++ +++ Sbjct: 241 --DHKFRVSMDSFFQVNVYQIKNLIDEVVSEIKDEGFKKMVDFYCGVGTLTIPASKYVKE 298 Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293 L +E + +V+ A+ NI N + NVK ++ +++ + + + Sbjct: 299 ALGIESNEEAVKDAKANIKHNKLKNVKFLKAQTEKGLKY--------------AKDFLPE 344 Query: 294 TIFVDPPRSGLDDAT---VGMVQAYPHILYISCNPDSLCRDL-SILSTTHTIERLALFDQ 349 + DPPRSGL+ + +Q I+Y+SC+P +L RDL L ++++ L D Sbjct: 345 AVIFDPPRSGLNRKIVNEISQIQTVRKIIYVSCDPSTLSRDLRQFLENGFRLKKVKLIDM 404 Query: 350 FPYTRHMECGVLLVR 364 FP T H+E +L R Sbjct: 405 FPQTYHIESISVLER 419 >gi|241895890|ref|ZP_04783186.1| 23S rRNA (uracil-5-)-methyltransferase [Weissella paramesenteroides ATCC 33313] gi|241870933|gb|EER74684.1| 23S rRNA (uracil-5-)-methyltransferase [Weissella paramesenteroides ATCC 33313] Length = 458 Score = 227 bits (578), Expect = 3e-57, Method: Composition-based stats. Identities = 77/379 (20%), Positives = 136/379 (35%), Gaps = 40/379 (10%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPN---LQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ 65 +YE QL K ++ + A + I P HYR + I DGD L + Sbjct: 93 RYEAQLKLKQFQVEKFYAAAGIDANIAPTIGMENPTHYRNKTVVPIKRDGDKLVTGFIKR 152 Query: 66 QT-KERMRIDYFMPGSLLI-----------NALMIEMMATIRLEPLLRAKLFQIDYLTSQ 113 +T E + + + +I NA I + + + +R + + Y + + Sbjct: 153 RTPGEILPLSDYYVNDPVIDQTIGTVRDILNAHHISVFSDETQQGEMRYIMVRRGYYSHE 212 Query: 114 SDQAIV----TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDE 169 +V T+ + + +R + + + + + D + + Sbjct: 213 LMVVLVAQTATIKDEMAIANEIAAIVPGIRSVVLNHNPRALHLLMSGDNRTLWGADAIHD 272 Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNFSLVLA 228 L + + NSF Q N + A +++ Y G G L +A Sbjct: 273 TLL----GIEFEIGPNSFYQVNPQTTEVLYALAARKAELKPTDTVIDAYSGIGTIGLTVA 328 Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288 +VL VE+ + +V A+ N+ N V N + + ++E Sbjct: 329 SQVKQVLGVEVIERAVIDAQKNVMNNQVKNATFITADAPAQMHRWQQE------------ 376 Query: 289 SYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSIL-STTHTIE-RL 344 IFVDPPR GL + + V +Y+SCNP ++ RD L I+ + Sbjct: 377 GLHANVIFVDPPRRGLTNELLDAVTEMRPDRFVYVSCNPATMARDAKYLIEQGFHIKGDV 436 Query: 345 ALFDQFPYTRHMECGVLLV 363 DQFP T H+E + Sbjct: 437 QPLDQFPQTAHVEVVTVFE 455 >gi|221194774|ref|ZP_03567831.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Atopobium rimae ATCC 49626] gi|221185678|gb|EEE18068.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Atopobium rimae ATCC 49626] Length = 468 Score = 227 bits (578), Expect = 3e-57, Method: Composition-based stats. Identities = 91/376 (24%), Positives = 138/376 (36%), Gaps = 42/376 (11%) Query: 10 YEQQLAEKVDRLRQMMLAFQ---------VPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60 YE QL EK + + + + EP YR + E G Sbjct: 111 YESQLREKKAGVVSALERIGHFSPKETSDLVRDIVAPGEPWGYRNKIELAFKRVGRKTLV 170 Query: 61 IMFDQQTKERMRIDYFMPGSLLINALMIEMMATI-RLEPLLRAKLFQIDYLTSQSDQAIV 119 M+ ++ +RI ++ + + L + +I TS+ + + Sbjct: 171 GMYAPNGQDIVRIKDCPLLDKAHEKIVGAVSGALSYLSGSHELDIERIGIRTSRRTKDVE 230 Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGR--- 176 ++ + A L DA A + ++K + ERL+ AG Sbjct: 231 VALWTAPGGFPRAQVARVLEDATGATSIVRVMTKGSSKARRIAG----VERLSGAGSWSE 286 Query: 177 ---TLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFD 232 R SF Q N ++E VL+A D ++LYCG G F+L LAR Sbjct: 287 LIGDERMRVSAPSFFQVNTKGAEKLVELVLSALDVRDSDEAMDLYCGAGTFTLPLARRVG 346 Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292 V AVE P+V R N+ +NV + + D D Sbjct: 347 FVSAVESYGPAVRDLRRNLEDAGWSNVDAIGGDAG------------RSFPDTDA----- 389 Query: 293 KTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL--STTHTIERLALFD 348 I VDPPR+GL V + Q+ I Y+SC+P +L RDL + T + D Sbjct: 390 DVIVVDPPRAGLAPDVVKQLSEQSARAIAYVSCDPATLARDLRRFVDAGTFKPVSVTPVD 449 Query: 349 QFPYTRHMECGVLLVR 364 FP T H+E VL+ R Sbjct: 450 LFPQTFHVENVVLMSR 465 >gi|160915380|ref|ZP_02077592.1| hypothetical protein EUBDOL_01388 [Eubacterium dolichum DSM 3991] gi|158432771|gb|EDP11060.1| hypothetical protein EUBDOL_01388 [Eubacterium dolichum DSM 3991] Length = 542 Score = 227 bits (578), Expect = 3e-57, Method: Composition-based stats. Identities = 86/386 (22%), Positives = 152/386 (39%), Gaps = 39/386 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-----IFRSEPIHYRMRAEFHIW-HDG 55 L+I +Y QL K L+Q ++ + + + I E YR + + + + Sbjct: 73 GCPLMIAKYPAQLQYKRSLLKQSLIKYAQVDPRKVEKVIGSEEIFGYRNQCKLPVSLNKE 132 Query: 56 DDLYHIMFDQQTKERMRIDYFMP---GSLLINALMIEMMATIRLEPLLRAKLFQIDYLT- 111 L + + + + G I +IE++ ++P I L Sbjct: 133 GQLCSGFYLPNSNIFTEMKKCIVHDRGVERIRHEVIEVLKRFGIQPYNHHTKSGIRSLVV 192 Query: 112 ----SQSDQAIVTLIYHRLLDDAWRECAIR----LRDALHARKYQIQLIGRANKTKICLD 163 + +VT IR L ++H K ++ G K + L Sbjct: 193 RGFDGKYQCTLVTGHDELSCSLIEDILHIRGMYSLWQSIHTVKNTAEVFG---KQMVHLG 249 Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNF 223 +++L L SF Q N + + + + KG + ++E Y G G Sbjct: 250 ---GEKQLPFHFDGLDLEVSPRSFFQLNTAQAKVLYQTIASLVKGHKKRIVEAYSGIGAI 306 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 SL L D ++ +E K +V A N NH +V+ + + + + +E Sbjct: 307 SLYLRDKADEIIGIETIKDAVVNANQNAKRNHCEHVRFLCDDAASKLTYLSKNKEI---- 362 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILSTTHTI 341 + VDPPRSGLDDA + + I+Y+SCNP +L ++L++L + + Sbjct: 363 ---------DVLVVDPPRSGLDDAMLECLLRSKIKEIIYVSCNPATLGKNLAVLQEKYRV 413 Query: 342 ERLALFDQFPYTRHMECGVLLVRKPS 367 +R+ D FP T+H+E VLL K + Sbjct: 414 QRVIPIDMFPNTQHVETVVLLSHKKA 439 >gi|77460439|ref|YP_349946.1| 23S rRNA 5-methyluridine methyltransferase [Pseudomonas fluorescens Pf0-1] gi|91207809|sp|Q3K8E9|RUMA_PSEPF RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|77384442|gb|ABA75955.1| 23S rRNA m(5)U-1939 methyltransferase [Pseudomonas fluorescens Pf0-1] Length = 461 Score = 227 bits (578), Expect = 3e-57, Method: Composition-based stats. Identities = 85/371 (22%), Positives = 146/371 (39%), Gaps = 30/371 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWHD--G 55 ++ + +QLA K L + + + YR RA + D Sbjct: 99 GCSVQHLPHNEQLALKQRMLAEQLSRVAGAEPEEWAAPLTGPEFGYRRRARIAVRWDSKA 158 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115 L +++ + I + +M + +R +A L ++ + S Sbjct: 159 KKLEVGFRAAGSQDIVAISECPVLVQPLQPIMTRLPEMLRRLSKPQA-LGHVELFSGSS- 216 Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175 V L + L +A L+D + Q+ L G + D + L Sbjct: 217 -LAVLLRHMAPLSEA---DLTILKDFCAFHEAQLWLHGEGEPQPVD-DAQSLGYHLEQWD 271 Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRV 234 L YR F Q NAG+N M+ L K + +L+L+CG GNF+L LA+ V Sbjct: 272 LQLAYR--PGDFIQVNAGVNEAMVAQALEWLKPTADERVLDLFCGLGNFALPLAKAAREV 329 Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294 +AVE + V+ A N A+N+++N K + + L D + F Sbjct: 330 VAVEGVQTMVDRAAANAASNNLHNTKFFQADLSQ------------PLTDAEWIGNGFSA 377 Query: 295 IFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRD-LSILSTTHTIERLALFDQFPY 352 + +DPPR G + + ++Y+SCNP +L RD + ++ + ++R + D FP Sbjct: 378 VLLDPPRDGAFEVVRKLAALGAKRLVYVSCNPATLARDTVELIKQGYRLKRAGILDMFPQ 437 Query: 353 TRHMECGVLLV 363 T H+E L Sbjct: 438 TAHVEAMALFE 448 >gi|67469205|ref|XP_650594.1| RNA methyltransferase [Entamoeba histolytica HM-1:IMSS] gi|56467236|gb|EAL45208.1| RNA methyltransferase, putative [Entamoeba histolytica HM-1:IMSS] Length = 479 Score = 227 bits (578), Expect = 3e-57, Method: Composition-based stats. Identities = 86/396 (21%), Positives = 154/396 (38%), Gaps = 50/396 (12%) Query: 2 SGTLLIDQ-YEQQLAEKVDRLRQMMLA-FQVPNLQIFRSEPI--HYRMRA--EFHIWHDG 55 G L Y+ QL K ++ QM+ + ++ PI YR R F + G Sbjct: 102 GGCLYQSMGYQHQLEMKKTQVLQMINKEIKDYQFDGIKASPINIGYRNRMDYTFGDGYIG 161 Query: 56 DD---LYHIMFDQQTKERMRIDYFMPGSLLINAL-----------MIEMMATIRLEPLLR 101 H M+ + + N L I I+ LR Sbjct: 162 GPLECGLHKMYHF--NDVVTTIDCRIVDKDFNELLLFTRDYFRIKNIPHYNKIKHTGYLR 219 Query: 102 AKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAI------RLRDALHARKYQIQLIGRA 155 L + T++ ++T + + + + +L +H I I Sbjct: 220 NLLIRKAKKTNEIMYCLITSSQLNVDLNELKNKLLELPLMGKLVSIIHCIFDDITDIVGY 279 Query: 156 NKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL- 214 +K + DY+ E L L ++ SF Q N+ + + V I+ D++ Sbjct: 280 DKMNVLYGNDYITEELL----GLHFKITPMSFFQTNSLGAEVLYQTVRDYITTIRCDIIF 335 Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274 +LYCG G + +L+ +++ VE+ + ++ AA+ N N + N + Sbjct: 336 DLYCGTGTITQLLSPICKKIIGVELNQDAIRAAKLNAELNKLTNCEFRAADVN------- 388 Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDL 332 E ++L++ R + I +DPPR+G+ + + Y I+Y+SC P +L RDL Sbjct: 389 --IELDQLQE-----NRPELIVLDPPRTGIHPNALSKIIKYGAQTIVYVSCMPTTLIRDL 441 Query: 333 SILST-THTIERLALFDQFPYTRHMECGVLLVRKPS 367 +L + ++ + L D FP T H+E LL + S Sbjct: 442 IVLEQNGYKVKNITLVDMFPNTPHVETVCLLKKINS 477 >gi|254430408|ref|ZP_05044111.1| 23S rRNA (uracil-5-)-methyltransferase [Cyanobium sp. PCC 7001] gi|197624861|gb|EDY37420.1| 23S rRNA (uracil-5-)-methyltransferase [Cyanobium sp. PCC 7001] Length = 451 Score = 226 bits (577), Expect = 3e-57, Method: Composition-based stats. Identities = 87/395 (22%), Positives = 152/395 (38%), Gaps = 50/395 (12%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ----VPNLQIFRSEPIHYRMRAEFHI-WHDGD 56 +L + + Q K +R+++ + + + YR RA + Sbjct: 77 GCSLQHLRDDLQSRWKGERVQEALERIGGLTTPVEAVVAAPACLGYRNRAIVPLERRADG 136 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-----------LRAKLF 105 L + + T + +++ ++AL+ + + LR Sbjct: 137 SLRAGYYRRGTHRIVNMNHCPVLDPRLDALIAPLKQDLEASGWPVDRELEGQGGLRHLAL 196 Query: 106 QIDYLTSQSDQAIVTLIYHRLLD------DAWRECAIRLRDALHARKYQIQLIGRANKTK 159 ++ + T + +V+ H L+ +AWR ++ + Q T+ Sbjct: 197 RLGHHTGEVLLTLVS--SHAELEGLASRAEAWRTRWPQIVGVTLNLQPQPTNTLLGPHTE 254 Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYC 218 + R ++ ER R ++F Q N +L + A +G+ LL + YC Sbjct: 255 LVAGRSWLRERFC----GEELRIASDTFFQVNTAQAERVLPSLQHALEGLTPGLLVDAYC 310 Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV-NNVKIVRMSSKEFTQAMRRER 277 G G FSL LAR RV +E +V A N + N + Sbjct: 311 GIGTFSLPLARGGWRVHGLERNPEAVRLAALNASINGLSELASFEAGDVAALLPPWL--- 367 Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSIL 335 R + +F+DPPR GLD A + +QA P +LY+SC+P +L RDL +L Sbjct: 368 ------------PRCQALFLDPPRRGLDGAVMAALQASSPPLLLYLSCDPATLARDLGLL 415 Query: 336 ST--THTIERLALFDQFPYTRHMECGVLLVR-KPS 367 + +T+ R+ D FP T H+E +L R +PS Sbjct: 416 TRSCGYTVSRVQPLDFFPQTSHIETLAVLRRAEPS 450 >gi|315635030|ref|ZP_07890311.1| 23S rRNA (uracil-5-)-methyltransferase [Aggregatibacter segnis ATCC 33393] gi|315476292|gb|EFU67043.1| 23S rRNA (uracil-5-)-methyltransferase [Aggregatibacter segnis ATCC 33393] Length = 438 Score = 226 bits (576), Expect = 4e-57, Method: Composition-based stats. Identities = 86/364 (23%), Positives = 161/364 (44%), Gaps = 32/364 (8%) Query: 11 EQQLAEKVDRLRQMMLAFQVPNL---QIFRSEPIHYRMRAEFHIWHDGDDL--YHIMFDQ 65 E Q + K L Q + Q + + + EP HYR R + D + + + Sbjct: 98 ELQRSAKQTALVQRLSRLQPVPIHFMPLLQGEPWHYRRRVRLSVLLDSKNRKLNIGLRRK 157 Query: 66 QTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHR 125 +++ + I++ + +N L+ ++ A + + + +L I+ + + + A++ + Sbjct: 158 NSQQIIPIEHCLVLEQPLNDLLPKLTA-LFSQWSMPQQLGHIELVAADNGIAMLLRHI-K 215 Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIEN 185 + + R +R A ++Q+ L + + + ++ Y ++ G + + Sbjct: 216 NVGETDRTLLLRF-----AEQHQLMLFVQEHDS---IEHWYGEQPYYRLGDDITLQFDIR 267 Query: 186 SFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 F Q NA +N M+ L Q +L+L+CG GNF+L L+R + +E V Sbjct: 268 DFIQINAQLNRQMIATALDWLELNPQDHVLDLFCGMGNFTLPLSRKVKSAVGIEGVSAMV 327 Query: 245 EAARYNIAANHVNNVKIVRMSSKE-FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 E AR N N +NV+ R + F ++ FN+ I +DPPR+G Sbjct: 328 EKARANAERNGCHNVQFYRTDLDKPFISQAWAQQPFNK-------------ILLDPPRTG 374 Query: 304 LDDATVGMVQAYPH-ILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVL 361 A + Q ILY+SCNP +L RD IL + ++++A+ D FP T H+E L Sbjct: 375 AAFALNALCQLQAESILYVSCNPATLVRDTEILRDAGYQLDKVAMIDMFPQTGHLESISL 434 Query: 362 LVRK 365 ++ Sbjct: 435 FRKR 438 >gi|220934276|ref|YP_002513175.1| RNA methyltransferase, TrmA family [Thioalkalivibrio sp. HL-EbGR7] gi|219995586|gb|ACL72188.1| RNA methyltransferase, TrmA family [Thioalkalivibrio sp. HL-EbGR7] Length = 446 Score = 226 bits (576), Expect = 4e-57, Method: Composition-based stats. Identities = 82/377 (21%), Positives = 139/377 (36%), Gaps = 32/377 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSE----PIHYRMRAEFHIWH--DG 55 +L Q+ K + +++ YR +A + + Sbjct: 87 GCSLQHMSDAAQVHAKQQAVLEVLEHVGKVVPAHILDPLQAHAWGYRRKARLGVKYVPKK 146 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115 ++ + ++ + ++ + + R ++ Q++ D Sbjct: 147 GGALVGFRERYSHYLATLEACEVLHPSVGRRIMILRDFLSTLDA-RDRIPQVEVAVDDED 205 Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175 + T + R LD RL+ A+ Q+ L + T L + E L A Sbjct: 206 R---TALVFRNLDALSDADMERLKTFAAAQDVQVWLQPKGPDTVHPLSPEQ-PEPLYYAH 261 Query: 176 RTLIYRQI--ENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFD 232 R F Q N IN M+ + G + +L+L+CG GNFSL LAR Sbjct: 262 PDFDVRIPFGPLDFVQVNRDINRAMVPRAIELLEVGPEHRVLDLFCGLGNFSLPLARRAG 321 Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS--SKEFTQAMRREREFNRLKDIDIHSY 290 V+ VE V AR N N + NV+ +++ A F+R Sbjct: 322 HVVGVEGEAVMVARARDNAEHNGIRNVEFHAADLAARDVIDAPWARAGFDR--------- 372 Query: 291 RFKTIFVDPPRSGLDDATVGMVQAY-PHILYISCNPDSLCRDLSIL--STTHTIERLALF 347 I +DPPR+G + + P I+Y+SCNP +L RD L S + +E + Sbjct: 373 ----ILLDPPRAGAAGVMKLLGRLNVPRIVYVSCNPATLARDADTLVHSLGYRLEAAGVM 428 Query: 348 DQFPYTRHMECGVLLVR 364 D FP+T H+E + V+ Sbjct: 429 DMFPHTAHVESMAVFVK 445 >gi|121730717|ref|ZP_01682830.1| cell division protein FtsY [Vibrio cholerae V52] gi|121627713|gb|EAX60357.1| cell division protein FtsY [Vibrio cholerae V52] Length = 209 Score = 226 bits (576), Expect = 5e-57, Method: Composition-based stats. Identities = 95/202 (47%), Positives = 139/202 (68%) Query: 7 IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66 + Y+ QLA+K+ RL+ M + + +P L++F S +YRMRAEF IWH+GDD+Y+IMF+Q+ Sbjct: 8 PELYQAQLADKIARLKAMFVDYSMPELEVFESPVANYRMRAEFRIWHEGDDMYYIMFNQE 67 Query: 67 TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL 126 T+E+ R+D F S LIN LM +M ++ P+LR KLFQ+D+L++ S + +V+L+YHR Sbjct: 68 TREKYRVDQFPAASRLINDLMPLLMDAMKGSPILRHKLFQVDFLSTLSGEILVSLLYHRQ 127 Query: 127 LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS 186 L + W A L+ L+ + + LIGRA K K+ LDRDYV E L V G+ +Y+Q+ENS Sbjct: 128 LSEEWITAAQALKQRLNDEGFNLNLIGRARKMKVVLDRDYVVENLQVNGQPYVYKQVENS 187 Query: 187 FTQPNAGINVHMLEWVLAATKG 208 FTQPNA + MLEW + T+ Sbjct: 188 FTQPNAKVAEKMLEWAVDCTQE 209 >gi|172036253|ref|YP_001802754.1| putative 23S rRNA methyltransferase/RumA [Cyanothece sp. ATCC 51142] gi|171697707|gb|ACB50688.1| putative 23S rRNA methyltransferase/RumA [Cyanothece sp. ATCC 51142] Length = 455 Score = 226 bits (576), Expect = 5e-57, Method: Composition-based stats. Identities = 79/377 (20%), Positives = 150/377 (39%), Gaps = 45/377 (11%) Query: 11 EQQLAEKVDRLRQMMLAFQ----VPNLQIFRSEP-IHYRMRAEFHIWH-DGDDLYHIMFD 64 E QL K +++ Q + P L I S + YR +A + + ++ + Sbjct: 92 EYQLTAKENQVIQALKRLGGFENPPVLPILSSPEILGYRNKATYPLRRSTTGNVQAGYYQ 151 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-----------LRAKLFQIDYLTSQ 113 + T + + ++ +N ++ ++ I+ + LR +I T + Sbjct: 152 RNTHQLINLNQCPIQDPRLNPILAQVKQDIQAQGWSIYNETTGTGKLRHLGLRIGKRTGE 211 Query: 114 SDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDE 169 +V+ L + + ++W + L +T + R Y+ E Sbjct: 212 ILLTLVSTSKNLTHFQQQAESWLQRYPDLVGVSVNYNPHQGNKIFGEETFNSVGRLYLTE 271 Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNFSLVLA 228 L ++ ++F Q N +L+ +L + +L++ YCG G F+L LA Sbjct: 272 TFG----ELNFQLSSDTFFQVNTEAAEILLKVLLDKLCLTGKENLVDAYCGVGTFTLPLA 327 Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288 + + + +E K ++E + N N +NNVK + + ++ + Sbjct: 328 KKVAQAVGIESNKNAIEQGKNNADMNGINNVKFYQGTVEKILPFLN-------------- 373 Query: 289 SYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTT--HTIERL 344 I +DPPR G D + ++ + P I+YISC P +L RDL L +T+E + Sbjct: 374 -LDPDIIVLDPPRKGCDRNVIHTLKEISPPIIIYISCQPSTLARDLEKLCQQDLYTLEWI 432 Query: 345 ALFDQFPYTRHMECGVL 361 D FP T H+E L Sbjct: 433 QPIDFFPQTPHVESVAL 449 >gi|229815568|ref|ZP_04445895.1| hypothetical protein COLINT_02618 [Collinsella intestinalis DSM 13280] gi|229808798|gb|EEP44573.1| hypothetical protein COLINT_02618 [Collinsella intestinalis DSM 13280] Length = 437 Score = 226 bits (576), Expect = 5e-57, Method: Composition-based stats. Identities = 80/373 (21%), Positives = 135/373 (36%), Gaps = 34/373 (9%) Query: 9 QYEQQLAEKVDRLRQMML---AFQVPNLQIFR------SEPIHYRMRAEFHIWHDGDDLY 59 +E QLA K + LR + F + EP YR + E +G Sbjct: 81 SHESQLAAKEENLRSALTRIGKFSPEEVAELMRPIRHTKEPWGYRNKVELAPVREGGKFR 140 Query: 60 HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAK-LFQIDYLTSQSDQAI 118 M + + +++D + + + R L ++ +S+ A+ Sbjct: 141 LGMHGRDASQVIKVDSCPLFDKKHAKAIKAVTGALGFLGNSRDLELERVGIRSSRRTGAL 200 Query: 119 VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYV--DERLTVAGR 176 ++ + + L DA+ A + + + + + + T Sbjct: 201 EIALWTPTGAFPRAQVSRVLSDAVRATSVVRVMSKGEKRARRVAGVEALAGEGSWTEKIG 260 Query: 177 TLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLARHFDRVL 235 R SF Q N +++ V+ A + ++LYCG G F+L LAR D V Sbjct: 261 EENMRLSAPSFFQVNTKAAEILIDLVMEALDPQPDEFGIDLYCGAGTFTLPLARRCDFVS 320 Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295 AVE P+V R N+ ++ NV ++ + D D + Sbjct: 321 AVESYGPAVRDLRRNLDIANLTNVDVIGGDA------------VREFPDEDA-----DVL 363 Query: 296 FVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLSIL--STTHTIERLALFDQFP 351 VDPPR+GL + ++ + + Y+SC+P +L RDL T D FP Sbjct: 364 VVDPPRAGLAPEAIRLIASTSARDVAYVSCDPATLARDLRRFVEEGTFRPVWATPVDLFP 423 Query: 352 YTRHMECGVLLVR 364 T H E V L R Sbjct: 424 QTFHCETVVRLTR 436 >gi|313898679|ref|ZP_07832214.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium sp. HGF2] gi|312956563|gb|EFR38196.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium sp. HGF2] Length = 438 Score = 226 bits (576), Expect = 5e-57, Method: Composition-based stats. Identities = 82/383 (21%), Positives = 152/383 (39%), Gaps = 38/383 (9%) Query: 3 GTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIF-----RSEPIHYRMRAEFHIWHDGDD 57 L+I +Y QL K D L+Q ++ + + + + YR + + + Sbjct: 74 CPLMIARYPAQLEYKQDLLKQSLIKYAQIDPRKVARVKASEDVFGYRNQFKLPCAMEEGR 133 Query: 58 LYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQ--------IDY 109 L +F + + + + + +++M + + + Sbjct: 134 LVSGLFMPNSNYFIDVKKCWIHEDGLERVRMDIMHVLNTHDCVSYNPHDKKGIRNLVVRG 193 Query: 110 LTSQSDQAIVT---LIYHRLLDDAWRECAIR-LRDALHARKYQIQLIGRANKTKICLDRD 165 ++ IVT + RL+ D R + L ++H K ++ NK Sbjct: 194 FDNRYQCTIVTGNEELDERLISDLMRIKGLTSLWQSIHTIKKTPEV--FGNKMMHLAG-- 249 Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSL 225 + L + L R SF Q N+ V + + + K ++E Y G G SL Sbjct: 250 --ETSLAMELDGLKLRISPRSFFQLNSKQAVQLYRTIASMVKENNELIVEAYSGIGAISL 307 Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285 L ++ +E K +V A N A N +V + + + ++R Sbjct: 308 YLKDKAKEIIGIESIKDAVVNANQNAALNGCEHVSFLCDDAANKLTYLSKKRSI------ 361 Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILSTTHTIER 343 + VDPPRSGLDDA + + +I+Y+SCNP +L ++L++L + + ++R Sbjct: 362 -------DVLVVDPPRSGLDDAMLECILRSKIKNIIYVSCNPATLGKNLAVLCSRYNVDR 414 Query: 344 LALFDQFPYTRHMECGVLLVRKP 366 + D FP+T H+E VL+ RK Sbjct: 415 IQPIDIFPHTPHVESVVLMSRKN 437 >gi|325920673|ref|ZP_08182583.1| 23S rRNA m(5)U-1939 methyltransferase [Xanthomonas gardneri ATCC 19865] gi|325548863|gb|EGD19807.1| 23S rRNA m(5)U-1939 methyltransferase [Xanthomonas gardneri ATCC 19865] Length = 444 Score = 226 bits (575), Expect = 5e-57, Method: Composition-based stats. Identities = 85/376 (22%), Positives = 140/376 (37%), Gaps = 31/376 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRS----EPIHYRMRAEFHIWH--DG 55 L QQ+ K L + Q + YR + F + Sbjct: 88 GCVLQHLDESQQIVAKQRVLMDNLERIGHVTPQAILPALVGDNWGYRRKGRFSVRRVEKK 147 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115 D + + + I + + A + + + QI+++ D Sbjct: 148 DKTLVGFRELDPRFVADLSVCYTVIPQIGEKIPLLAALVEGLD-GKRDIPQIEFIAG--D 204 Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL--DRDYVDERLTV 173 +A+V I H + L + A + I L ++ L + + RL Sbjct: 205 EAVVLTIRH--MQPLSERDLQALTEFAQAHDFAIFLQPGGVESVHPLWPQQVPLSFRLPQ 262 Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFD 232 L +R F Q NA +N M+ LA D +L+L+CG GNF+L LAR Sbjct: 263 WDVELAFR--PLDFIQVNASLNQKMIAHALALLDARPEDRVLDLFCGLGNFTLPLARGVR 320 Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292 V+ VE V AR N N ++N + + + TQ R + F Sbjct: 321 EVVGVEGDAGLVARARENAQRNGLDNAQFH---AADLTQDQRHTAWMRQ---------GF 368 Query: 293 KTIFVDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDLSIL--STTHTIERLALFDQ 349 + +DPPRSG + + ++ + I+Y+SC+P SL RD L T++ D Sbjct: 369 DKLLLDPPRSGALEVLQQLPLKKFERIVYVSCHPGSLARDAGYLVNEQGFTLKAAGAMDM 428 Query: 350 FPYTRHMECGVLLVRK 365 FP+T H+E + R+ Sbjct: 429 FPHTAHVESIAVFERR 444 >gi|188996180|ref|YP_001930431.1| RNA methyltransferase, TrmA family [Sulfurihydrogenibium sp. YO3AOP1] gi|188931247|gb|ACD65877.1| RNA methyltransferase, TrmA family [Sulfurihydrogenibium sp. YO3AOP1] Length = 419 Score = 226 bits (575), Expect = 6e-57, Method: Composition-based stats. Identities = 79/375 (21%), Positives = 153/375 (40%), Gaps = 40/375 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWHDGDD 57 YE QL K + L+ +L +I EP YR RA+ D Sbjct: 73 GCDFQHTTYENQLLLKKEILKDQLLRIGKIETEIEKIIPSKEPFRYRNRAQLKF----DG 128 Query: 58 LYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQA 117 + + + + + +D + I L+ + + ++ + I ++ ++ Sbjct: 129 KNLGFYKKDSNDLVNVDNCLLLKEDIEKLLNPLKKFLIKYAIMPS---NIHIFSNTKEEK 185 Query: 118 IVTLIYHRLLDDAWRECAIRLRDALHAR-KYQIQLIGRANKTKI--CLDRDYVDERLTVA 174 ++ + LD++ I + +I+ IG K K L D V E + Sbjct: 186 LIRFEF---LDESQFSNIIYDMNIFREEIDEKIKGIGFYAKHKRYSLLGEDVVFENIG-- 240 Query: 175 GRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNFSLVLARHFDR 233 +R +SF Q N ++++ V++ K L++ YCG G ++ +++ Sbjct: 241 --DYKFRVSMDSFFQVNVYQIKNLIDEVVSEIKDKGFKKLVDFYCGVGTLTIPASKYVKE 298 Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293 L +E + +V+ A+ NI N + NVK ++ +++ + + + Sbjct: 299 ALGIESNEEAVKDAKANIKHNKLKNVKFLKTQTEKGLKY--------------AKDFLPE 344 Query: 294 TIFVDPPRSGLDDAT---VGMVQAYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQ 349 + DPPRSGL+ + +Q I+Y+SC+P +L RDL ++++ L D Sbjct: 345 VVIFDPPRSGLNRKIVNEISQIQTVRKIIYVSCDPSTLSRDLRQFVENGFKLKKVKLIDM 404 Query: 350 FPYTRHMECGVLLVR 364 FP T H+E +L R Sbjct: 405 FPQTYHIESISVLER 419 >gi|302379709|ref|ZP_07268194.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Finegoldia magna ACS-171-V-Col3] gi|302312616|gb|EFK94612.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Finegoldia magna ACS-171-V-Col3] Length = 442 Score = 226 bits (575), Expect = 6e-57, Method: Composition-based stats. Identities = 80/386 (20%), Positives = 147/386 (38%), Gaps = 43/386 (11%) Query: 2 SGTLLID-QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSE-PIHYRMRAE--FHIWHDGDD 57 G + +Y+ + K L ++ ++ S YR + E F G Sbjct: 76 GGCIYQKLEYDVECDLKKKTLTELYKDIYDKDITFHPSPFLQGYRNKMEYTFGDSVKGGP 135 Query: 58 LYHIMFDQQT----KERMRIDYFMPGSLLINALMIEMMAT--------IRLEPLLRAKLF 105 L + + + + + G I + E I+ LLR + Sbjct: 136 LVLGLHTKNKFYEITDNVDCNIIDEGFNKIRQAVQEYFRDKNYEFFKKIKHTGLLRHFII 195 Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDA---WRECAIRLRDALHARKYQIQLIGRANKTKICL 162 + + + +VT ++D ++ R+ H I +K ++ Sbjct: 196 RKSFSEDEYMINLVTTSDEFDVNDFVEFAKQIDNRIVSIYHTINDNISDAVIVDKLELLY 255 Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNG 221 ++Y+ E++ L +R SF QPN + L + G ++ +LYCG G Sbjct: 256 GKEYLTEKI----NGLEFRISPFSFFQPNPAQAEQIYTRALELAGDLSGKNVYDLYCGTG 311 Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281 + + A+ + V+ VEI + +VE A+ N N + N K + F + + ++ Sbjct: 312 TIAQIFAKKSESVIGVEIVEEAVEKAKENAKLNGLTNTKFICDDCLNFMEKVEKK----- 366 Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCRDL-SILSTT 338 + +DPPR G+ + ++ P +YISCNP + DL + Sbjct: 367 -----------DVVVLDPPRDGIHPKAIDRLIDINPDKFIYISCNPITQRMDLDKFIEKG 415 Query: 339 HTIERLALFDQFPYTRHMECGVLLVR 364 + I+ L FDQFP T H E V+L + Sbjct: 416 YKIKSLEFFDQFPRTYHCEAVVMLEK 441 >gi|54310181|ref|YP_131201.1| 23S rRNA 5-methyluridine methyltransferase [Photobacterium profundum SS9] gi|46914622|emb|CAG21399.1| putative TrmA family RNA methyltransferase [Photobacterium profundum SS9] Length = 471 Score = 226 bits (575), Expect = 6e-57, Method: Composition-based stats. Identities = 86/384 (22%), Positives = 142/384 (36%), Gaps = 45/384 (11%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-------------------VPNLQIFRSEPIH 42 L ++ Q+ K L +M+ F + + H Sbjct: 95 GCNLQHLSHQGQVLAKQQALSDLMVKFAGDQQVAVDKQRAGDQQRALFEQVTPIIAAEHH 154 Query: 43 YRMRAEFHIW-HDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLR 101 YR A F + L + +Q+K+ + + + +N L+ + + + R Sbjct: 155 YRRCARFSVLLGKDGQLQFGLRKKQSKDIVNVKQCPVLAESLNELLPPLRSLLSTLKGQR 214 Query: 102 AKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161 L I+ + ++D V LI H L + + + + + L ++ ++ Sbjct: 215 H-LGHIELI--EADNGRVVLIRH--LKPFSDKDMTLILNFAQEQNVILFLAPTSDDIELI 269 Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGN 220 E L F Q N +N M+E D +L+L+CG Sbjct: 270 HG-----ETPYYRLDDLTLHFSPKDFIQVNRDVNKKMVEQATDWLDLQPSDRVLDLFCGL 324 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 GNFSL LA+H V+ VE V A N N NN + + E + RE Sbjct: 325 GNFSLPLAKHAKAVVGVEGIDEMVHRATENAMCNKQNNATFYQANLDEDVTKLAWAREP- 383 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDLS-ILSTT 338 F I +DP R+G +V+ P ++Y+SCNP +L RD +L Sbjct: 384 -----------FNKILLDPARAGAAGVMEHVVKLKPERVVYVSCNPATLARDSQVLLKKG 432 Query: 339 HTIERLALFDQFPYTRHMECGVLL 362 + +ERL + D FP T H+E L Sbjct: 433 YQLERLGMLDMFPQTGHLESMALF 456 >gi|255074621|ref|XP_002500985.1| predicted protein [Micromonas sp. RCC299] gi|226516248|gb|ACO62243.1| predicted protein [Micromonas sp. RCC299] Length = 473 Score = 225 bits (574), Expect = 7e-57, Method: Composition-based stats. Identities = 81/413 (19%), Positives = 141/413 (34%), Gaps = 71/413 (17%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ---------IFRSEPIHYRMRAEFHIW 52 T Y QL K D++ +M + + + YR + EF Sbjct: 81 GCTWQDIAYAHQLTMKRDQVVDVMTRVAKVDQTRVQNIVGDCVPSDKTERYRNKMEFAFG 140 Query: 53 H--DGDDLYHIMFDQQTK-ERMRIDYFMPGSLLINALMIEMMATIRL------------- 96 +G + + + + I G LL + + E++ R Sbjct: 141 PGANGRGVVIGLRPSGNHSDLVEIGN-PDGCLLQHPVADEVLRGCRAHLDSNGNSSLLDA 199 Query: 97 ------EPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDA------WRECAIRLRDALHA 144 E +LR+ ++ + A V + DD E ++R + Sbjct: 200 FNRRTGEGVLRSLTVRVAVDENGETIAAVDIAAATRGDDEDAALRGLAEAIAKVRGVASS 259 Query: 145 RKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA 204 G + + L L + R + + SF Q N ++ V Sbjct: 260 GGGDADGEGWSGEDVEVLSGAA---TLPMKLRGVTFALSAPSFFQTNTDQAEKLVAAVED 316 Query: 205 ATKGIQGD----LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK 260 A G GD +L+L+CG G L +A+ V E+ +V+ A N AN + N Sbjct: 317 AC-GFSGDGTEVVLDLFCGVGTLGLCVAKKAKHVFGWEVVPEAVKDAERNAEANGITNAT 375 Query: 261 IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHI 318 R + ++ + DP R+G+D++ V +++ I Sbjct: 376 FRRGDLAKLKASLPG----------------PDIVIADPARAGMDESLVKVLRSIGAERI 419 Query: 319 LYISCNPDSLCRDLSILSTT-------HTIERLALFDQFPYTRHMECGVLLVR 364 +Y+SCNP + RDL L + + D FP+T H+E V+L R Sbjct: 420 VYVSCNPATQARDLLRLKGGDGGEGARYDVRYCTPVDMFPHTPHVETVVVLDR 472 >gi|50401424|sp|Q6LMS7|RUMA_PHOPR RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase Length = 466 Score = 225 bits (574), Expect = 8e-57, Method: Composition-based stats. Identities = 86/384 (22%), Positives = 142/384 (36%), Gaps = 45/384 (11%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-------------------VPNLQIFRSEPIH 42 L ++ Q+ K L +M+ F + + H Sbjct: 90 GCNLQHLSHQGQVLAKQQALSDLMVKFAGDQQVAVDKQRAGDQQRALFEQVTPIIAAEHH 149 Query: 43 YRMRAEFHIW-HDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLR 101 YR A F + L + +Q+K+ + + + +N L+ + + + R Sbjct: 150 YRRCARFSVLLGKDGQLQFGLRKKQSKDIVNVKQCPVLAESLNELLPPLRSLLSTLKGQR 209 Query: 102 AKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161 L I+ + ++D V LI H L + + + + + L ++ ++ Sbjct: 210 H-LGHIELI--EADNGRVVLIRH--LKPFSDKDMTLILNFAQEQNVILFLAPTSDDIELI 264 Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGN 220 E L F Q N +N M+E D +L+L+CG Sbjct: 265 HG-----ETPYYRLDDLTLHFSPKDFIQVNRDVNKKMVEQATDWLDLQPSDRVLDLFCGL 319 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 GNFSL LA+H V+ VE V A N N NN + + E + RE Sbjct: 320 GNFSLPLAKHAKAVVGVEGIDEMVHRATENAMCNKQNNATFYQANLDEDVTKLAWAREP- 378 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDLS-ILSTT 338 F I +DP R+G +V+ P ++Y+SCNP +L RD +L Sbjct: 379 -----------FNKILLDPARAGAAGVMEHVVKLKPERVVYVSCNPATLARDSQVLLKKG 427 Query: 339 HTIERLALFDQFPYTRHMECGVLL 362 + +ERL + D FP T H+E L Sbjct: 428 YQLERLGMLDMFPQTGHLESMALF 451 >gi|194366743|ref|YP_002029353.1| 23S rRNA 5-methyluridine methyltransferase [Stenotrophomonas maltophilia R551-3] gi|226725395|sp|B4SRK6|RUMA_STRM5 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|194349547|gb|ACF52670.1| RNA methyltransferase, TrmA family [Stenotrophomonas maltophilia R551-3] Length = 444 Score = 225 bits (574), Expect = 8e-57, Method: Composition-based stats. Identities = 88/376 (23%), Positives = 136/376 (36%), Gaps = 31/376 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWH--DG 55 L +QQ+ K L + E YR + F + Sbjct: 88 GCVLQHLDEDQQIVAKQRVLMDNLERIGHVKPGTVLAPLVGESWGYRRKGRFSVRRVEKK 147 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115 D +Q + + + I +E ++T + + QI+++ D Sbjct: 148 DKTLVGFREQDPRFVADLSQCLTVIPEI-GTKVEALSTFIESLDGKRDIPQIEFIAG--D 204 Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVD--ERLTV 173 QA+V + H L + I L T LD V RL Sbjct: 205 QAVVLTVRH--LQPLSDADRAAWATFGQQHGFVIYLQSGGVDTVQPLDGQGVPLSFRLAP 262 Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFD 232 L +R F Q NA +N M+ L G +L+L+CG GNF+L LAR Sbjct: 263 WDVELAFR--PLDFIQVNAKLNEKMIAHALDLLEPGEDERVLDLFCGLGNFTLPLARRVR 320 Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292 V+ VE V AR N N + N + S + TQ R + F Sbjct: 321 EVVGVEGDAGLVARARENAERNGLANAQFF---SADLTQDQRSTAWMRQ---------GF 368 Query: 293 KTIFVDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDLSIL--STTHTIERLALFDQ 349 + +DPPRSG + + ++ + I+Y+SC+P SL RD L T+ D Sbjct: 369 DKLLLDPPRSGAIEVLQQLPLKQFKRIVYVSCHPGSLARDAGYLVNEQGFTLVSAGAMDM 428 Query: 350 FPYTRHMECGVLLVRK 365 FP+T H+E + ++ Sbjct: 429 FPHTAHVESIAVFEKR 444 >gi|186681361|ref|YP_001864557.1| RNA methyltransferase [Nostoc punctiforme PCC 73102] gi|186463813|gb|ACC79614.1| RNA methyltransferase, TrmA family [Nostoc punctiforme PCC 73102] Length = 468 Score = 225 bits (574), Expect = 8e-57, Method: Composition-based stats. Identities = 70/388 (18%), Positives = 142/388 (36%), Gaps = 45/388 (11%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDG- 55 Y+ QL K +++ Q M N + + YR ++ + + Sbjct: 84 GCQWQHINYDYQLVAKQNQVIQAMERIGGFVQPPVNPVLAAPSALGYRNKSTYPLGTSAT 143 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-----------LRAKL 104 + + + + + + ++ +N L+ E+ I+ + +R Sbjct: 144 GQVQAGYYQKGSHQLINLNQCPVQDARLNPLLAEVKQDIQRQGWQIYDEQRHQGKIRHLG 203 Query: 105 FQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR 164 +I T + +V ++ + + ++ L + L +++T Sbjct: 204 LRIGRHTGEMLLTLVVKDWNLSGIETQAQEWLKRYPQL----VGVSLNRNSDRTNAIFGS 259 Query: 165 D----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCG 219 + L L ++ ++F Q +L+ + + +LL + YCG Sbjct: 260 EIRCIAGVPHLRENFAGLEFQVRPDTFFQVYTETAEALLQVIQSELNLQGHELLVDAYCG 319 Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279 G +L LA+ +E+ +VE A N N ++NV + + ++ M Sbjct: 320 IGTLTLPLAKKVRIATGLEVQPAAVEQALLNAHCNGIDNVTFLVGAVEKLLPKM------ 373 Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILS- 336 + + +DPPR G D A + ++ I+Y+SC +L RDL +L Sbjct: 374 ---------GTIPEVVILDPPRKGCDRAVIDTLRQLKPSRIVYVSCKVATLARDLKLLCQ 424 Query: 337 -TTHTIERLALFDQFPYTRHMECGVLLV 363 +TI R+ D FP T H+E LV Sbjct: 425 DGQYTITRVQPADFFPQTAHVEAAAFLV 452 >gi|325847814|ref|ZP_08170036.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325480832|gb|EGC83885.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 548 Score = 225 bits (574), Expect = 9e-57, Method: Composition-based stats. Identities = 80/402 (19%), Positives = 154/402 (38%), Gaps = 55/402 (13%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLA--FQVPNLQIFRSEP-IHYRMRAEFHI---WHDG 55 + YE +L K + +++++ V L I RS YR + E+ + DG Sbjct: 81 GCSYQKMGYETELLLKHNMMQKLLKNHHIDVKELSIVRSPKIKGYRNKMEYTFGDSYKDG 140 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLE-----------PLLRAKL 104 + + + E + + ++ + R + LLR + Sbjct: 141 PLVLGLHRQNRFYEIVDTEGCNIVDEDFESIRKHVQNYFREKNTSFYHKKAHTGLLRNLI 200 Query: 105 FQIDYLTSQSDQAIVT------------LIYHRLLDDAWRECAIRLRDALHARKYQIQLI 152 + T + +VT L H LL+ R+ H + Sbjct: 201 IRKAMHTGEIMVILVTSSDKSFDPMRRDLFAHNLLNA---RTNGRIVSIYHVINDSLSDA 257 Query: 153 GRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQG 211 + + ++ + Y++E + L ++ SF QPN + + + A Sbjct: 258 VKVDSMELLFGKKYIEENM----NDLKFQISPFSFFQPNVFTAEKIYQKAIELANVDKNK 313 Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271 ++L+LY G G + + A+ ++ + +EI + +VE A N N + N+ + Sbjct: 314 NVLDLYSGTGTITQLFAKAANKAVGIEIVEEAVEKAFDNAKENQIENINFIAGDV----- 368 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLC 329 L+ ID+ ++ + +DPPR G++ + + +YISCNP + Sbjct: 369 ----------LEKIDLVKGKYDIVVLDPPREGINPKAIKKIMDINPKEFVYISCNPKTQV 418 Query: 330 RDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRKPSGWH 370 RD+ I + +E+ FDQFP +RH+E LL + H Sbjct: 419 RDIEIFMENGYKVEKYQAFDQFPRSRHVETVALLSKLDVDKH 460 >gi|330828386|ref|YP_004391338.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Aeromonas veronii B565] gi|328803522|gb|AEB48721.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Aeromonas veronii B565] Length = 440 Score = 225 bits (573), Expect = 9e-57, Method: Composition-based stats. Identities = 80/373 (21%), Positives = 142/373 (38%), Gaps = 30/373 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLA---FQVPNLQ-IFRSEPIHYRMRAEFHIWHDGDD 57 + Q A K L + + P L+ + E YR I D + Sbjct: 89 GCSAQHMSVADQQAAKAAGLVSLFERLGNIKAPALEPVLTGEDRAYRRVCRLAIKFDKNG 148 Query: 58 L--YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115 + + + + ID + ++AL+ + + R +L + + ++ Sbjct: 149 RCTRVGFRRRNSNDLVEIDSCPVLAEPLSALIAPLRECLNRLKSQR-ELGHAELIQAEQG 207 Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175 ++ R + L + A+ + L ++ + L + + + + Sbjct: 208 IMMLLRHTGRPNE----ADRALLVEFAKAQGIDLYLQAADDRIE-ALQQQFSP---SYSL 259 Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRV 234 L F Q N IN M+E L + D +L+L+CG GNF+L LAR V Sbjct: 260 DGLSLAFAPGDFIQVNGPINQSMVEQALKWLGASKDDKVLDLFCGIGNFTLPLARQAREV 319 Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294 + VE V+ A N N + N + + + M RE F Sbjct: 320 VGVEGELAMVQRAEENARRNGITNARFYKADLSDDIVGMSWARE------------GFDL 367 Query: 295 IFVDPPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPY 352 + +DP R G + +V+ P ++Y+SCNP +L RD +L + + RL + D FP+ Sbjct: 368 VLLDPARPGALEVMGHVVKLSPKRVVYVSCNPVTLARDSQVLVKGGYRLVRLGMLDMFPH 427 Query: 353 TRHMECGVLLVRK 365 T H+E L R+ Sbjct: 428 TGHLESMALFERE 440 >gi|262170599|ref|ZP_06038277.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Vibrio mimicus MB-451] gi|261891675|gb|EEY37661.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Vibrio mimicus MB-451] Length = 440 Score = 225 bits (573), Expect = 9e-57, Method: Composition-based stats. Identities = 87/373 (23%), Positives = 152/373 (40%), Gaps = 32/373 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFR---SEPIHYRMRAEFHIWHDGDDL 58 L Q+ K L Q+M+ F +L + S+ YR RA + D + Sbjct: 90 GCDLQHLDRAGQINHKQQALSQLMVKFAGQSLALSAPVCSDDQGYRRRARLSLMWDKKNQ 149 Query: 59 Y--HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116 +Q+K + + + +NAL+ E+ A + + L ++ + + Q Sbjct: 150 QLQFGFRRKQSKAIVSVTHCPVLEPSLNALLPELNALLS-QWSQPELLGHVELVKGDNTQ 208 Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR-DYVDERLTVAG 175 +V R L + L D + + L A + + Y +E Sbjct: 209 VLVL----RHLGALAGQDQQSLTDFATQKGLTLYLTLEAGELQHVQGEAPYCEET----- 259 Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRV 234 + N F Q N +N M+E L Q +L+L+CG GNF+L L + V Sbjct: 260 -GSRLSFLPNHFIQVNRAVNQQMVEQALNWLEVNKQDRVLDLFCGLGNFTLPLTKQAQEV 318 Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294 + VE + V+ A +N N +NNV + + ++ + + +F Sbjct: 319 VGVEGVEEMVQHATHNAKLNQINNVAFYQANLEQ------------DMTNASWAQQKFAK 366 Query: 295 IFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPY 352 + +DP R+G + + ++Y+SCNP +L RD S+LS +E+L + D FP+ Sbjct: 367 VLLDPARAGAEGIVDQLAALGAERVVYVSCNPATLARDSQSLLSQGFRLEKLGMLDMFPH 426 Query: 353 TRHMECGVLLVRK 365 T H+E L V+K Sbjct: 427 TSHLESMALFVKK 439 >gi|295097348|emb|CBK86438.1| 23S rRNA m(5)U-1939 methyltransferase [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 432 Score = 225 bits (573), Expect = 1e-56, Method: Composition-based stats. Identities = 76/335 (22%), Positives = 132/335 (39%), Gaps = 27/335 (8%) Query: 34 QIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ--QTKERMRIDYFMPGSLLINALMIEMM 91 I P YR RA + + M + + + + + + AL+ ++ Sbjct: 118 DIIADRPWGYRRRARLSLSYQPKTERLEMGFRKAGSSDIVSVTQCPVLVPHLEALLPDVH 177 Query: 92 ATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQL 151 + +R+ L ++ + + S +V R + +L H+ + + L Sbjct: 178 HCLASLDGVRS-LGHVELVLANSGPLMVL----RHTAPLSKADREKLERFSHSHELALFL 232 Query: 152 IGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQ 210 ++ + E A L F Q N G+N M+ LA Sbjct: 233 APQSEILEQVSG-----EAPWYASDGLRLTFSPRDFIQVNDGVNQQMVANALAWLDVQPT 287 Query: 211 GDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270 +L+L+CG GNF+L LAR V+ VE + V + N N + NV + ++ Sbjct: 288 DRVLDLFCGMGNFTLPLARKAASVVGVEGVEALVVKGQENAQQNGLQNVTFFHQNLED-- 345 Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP-HILYISCNPDSLC 329 + F I +DP R+G +++ P ++Y+SCNP +L Sbjct: 346 ----------DVTQQPWAKQGFDKILLDPARAGAPGVMQHIIKLAPERVVYVSCNPATLA 395 Query: 330 RDL-SILSTTHTIERLALFDQFPYTRHMECGVLLV 363 RD ++LS + I RLA+ D FP+T H+E VL Sbjct: 396 RDSEALLSGGYQIRRLAMLDMFPHTGHLESMVLFE 430 >gi|289523129|ref|ZP_06439983.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503672|gb|EFD24836.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 453 Score = 225 bits (573), Expect = 1e-56, Method: Composition-based stats. Identities = 79/392 (20%), Positives = 143/392 (36%), Gaps = 48/392 (12%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQV-PNLQIFRSEP----IHYRMRAEFHIWHDGD 56 + Y+ Q+ K + ++ I P YR +A + Sbjct: 81 GCNMQHASYDHQVKVKSSLIEDAIIRIGKWKEADIAPVIPSFLVWGYRNKAIIQARYQKG 140 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATI-------RLEPLLRAKLFQIDY 109 + F + T + + + LI + + + E + Sbjct: 141 ERKLGYFARGTHDVVNLKACPILDPLIYLVYANLRNAVLQSDLSFYDEETGEGLIRNFVL 200 Query: 110 LTSQSDQAIVT-LIYHRLLDDAWRECAIRLRDALHA------------RKYQIQLIGRAN 156 +S S + I+ I+ R DD + + + L+ + Sbjct: 201 RSSFSMKKILLAWIFSREPDDRECKMISDISNGLYEDVSPFLGGVQININPSKGNFIWGS 260 Query: 157 KTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLEL 216 KT+ +D + ER + +R + F Q N M E V + + +LEL Sbjct: 261 KTQSLFGKDVLVERF----ENIKFRFGVSDFFQVNVLQAFRMFETVAELARDSKH-VLEL 315 Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276 Y G G+ + LA + ++AVE +P+ E+ N+ N +NNV + +++ + Sbjct: 316 YSGVGSMTAFLASFCNDIVAVEEWRPAYESLVSNMTNNGINNVTAICGKAEDVVKT---- 371 Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV---QAYPHILYISCNPDSLCRDLS 333 S F + VDPPR+G + + + ++Y+SCNP +L RD Sbjct: 372 ----------KVSGHFDIVVVDPPRTGCHKDVLNFIGRVISPKKVIYVSCNPATLARDSK 421 Query: 334 ILST-THTIERLALFDQFPYTRHMECGVLLVR 364 IL+ + +E D FP T H+E VLL + Sbjct: 422 ILNEYGYNMENAMPLDMFPQTSHVESVVLLEK 453 >gi|157961009|ref|YP_001501043.1| 23S rRNA 5-methyluridine methyltransferase [Shewanella pealeana ATCC 700345] gi|226725390|sp|A8H1S1|RUMA_SHEPA RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|157846009|gb|ABV86508.1| RNA methyltransferase, TrmA family [Shewanella pealeana ATCC 700345] Length = 445 Score = 225 bits (573), Expect = 1e-56, Method: Composition-based stats. Identities = 87/383 (22%), Positives = 151/383 (39%), Gaps = 52/383 (13%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAF-QVPNLQI---FRSEPIHYRMRAEFHIWHDGDD 57 L E Q K + L ++ F Q ++ + HYR RA W D + Sbjct: 91 GCDLQHLDIEAQRKHKANTLVDLVNKFAQTQASEVCAPLSGDAWHYRRRARLATWFDKNT 150 Query: 58 LYH--IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115 + + + + I + ++AL+ ++ F ++ L+ + Sbjct: 151 KHISLGFRASSSSDVVEIQSCAVLAEPLSALIPDLA-------------FMLNQLSGKKA 197 Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL---DRDYVDERLT 172 V L D +R+ L + K + +L+ ANK ++ + D D E L Sbjct: 198 LGHVELTQ----ADNGNFVVLRVTKVL-SDKDKARLVEFANKHEVIVLLQDDDAQCEHLN 252 Query: 173 VAGRTLIY---------RQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGN 222 AG Y +F Q N +N M+ + G+ +L+L+CG GN Sbjct: 253 GAGEQPFYALSGSDIKLNFSPGNFIQVNGPVNQAMVSQAVEWLSPKAGERVLDLFCGIGN 312 Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282 FSL LA+ V+ VE VE AR N + ++ V + + +E ++ Sbjct: 313 FSLPLAKDGAEVIGVEGVVAMVEQARVNAKQSGLDKVAFYHAD---LSADLSKEPWLGKV 369 Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH-ILYISCNPDSLCRDLS-ILSTTHT 340 + +DP R+G ++ + + P ++Y+SCNP SL RD IL + Sbjct: 370 ----------DKMLIDPARAGAYESMQSLKKLKPKALVYVSCNPASLARDSEVILKQGYQ 419 Query: 341 IERLALFDQFPYTRHMECGVLLV 363 ++++ L D FP T H+E L Sbjct: 420 LKKIGLIDMFPQTHHLESMALFE 442 >gi|262166494|ref|ZP_06034231.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Vibrio mimicus VM223] gi|262026210|gb|EEY44878.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Vibrio mimicus VM223] Length = 440 Score = 225 bits (573), Expect = 1e-56, Method: Composition-based stats. Identities = 88/373 (23%), Positives = 151/373 (40%), Gaps = 32/373 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFR---SEPIHYRMRAEFHIWHDGD-- 56 L Q+ K L Q+M+ F +L + S+ YR RA + D Sbjct: 90 GCDLQHLDRTAQINHKHQALSQLMVKFAGQSLALSAPVCSDDQGYRRRARLSLMWDKKTQ 149 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116 L +Q+K + + +NAL+ E+ + + L ++ + + Q Sbjct: 150 QLQFGFRRKQSKAIVSVTRCPVLEPSLNALLPEL-NVLLSQWSQPELLGHVELVKGDNTQ 208 Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR-DYVDERLTVAG 175 +V R L + L D + + L A + + Y +E Sbjct: 209 VLVL----RHLGALAEQDQQSLSDFATQKGLTLYLTLEAGELQHVQGEAPYCEET----- 259 Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRV 234 + N F Q N +N M+E L Q +L+L+CG GNF+L LA+ V Sbjct: 260 -GSRLSFLPNHFIQVNRAVNQQMVEQALNWLEVNKQDRVLDLFCGLGNFTLPLAKQAQEV 318 Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294 + VE + V+ A +N N +NNV + + ++ + + +F Sbjct: 319 VGVEGVEEMVQHATHNAKLNQINNVAFYQANLEQ------------DMTNASWAQQKFAK 366 Query: 295 IFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPY 352 + +DP R+G + + ++Y+SCNP +L RD S+LS +E+L + D FP+ Sbjct: 367 VLLDPARAGAEGIVDQLAALGAERVVYVSCNPATLARDSQSLLSQGFRLEKLGMLDMFPH 426 Query: 353 TRHMECGVLLVRK 365 T H+E L V+K Sbjct: 427 TSHLESMALFVKK 439 >gi|259909468|ref|YP_002649824.1| 23S rRNA 5-methyluridine methyltransferase [Erwinia pyrifoliae Ep1/96] gi|224965090|emb|CAX56622.1| 23S rRNA (Uracil-5-)-methyltransferase [Erwinia pyrifoliae Ep1/96] gi|283479541|emb|CAY75457.1| putative SAM-dependent methyltransferase [Erwinia pyrifoliae DSM 12163] Length = 438 Score = 225 bits (573), Expect = 1e-56, Method: Composition-based stats. Identities = 84/361 (23%), Positives = 141/361 (39%), Gaps = 30/361 (8%) Query: 13 QLAEKVDRLRQMMLAF---QVPNLQIFRSEPIHYRMRAEFHIWHDG--DDLYHIMFDQQT 67 Q K L ++ V I YR RA + L+ ++ T Sbjct: 100 QQQSKAKALGHLLSKQRGEAVAVDDIITGPTWGYRRRARLGLSFQPATQTLHMGFREKST 159 Query: 68 KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLL 127 E + I + +NAL+ + A + +R +L ++ + + + +V R L Sbjct: 160 SELVNITHCPILKPELNALLQPLRAVLSGLQAVR-RLGHVELVQADNGPLLVL----RHL 214 Query: 128 DDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSF 187 D +L H + L + + V TL + F Sbjct: 215 DALTTGDRQKLEQFSHKHHLSLYLAADGDSLEQASG---VMPHYRSGDLTLTF--SPRDF 269 Query: 188 TQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246 Q N +N M+ L D +L+LYCG GNF+L + + V+ VE V Sbjct: 270 IQVNDEVNQQMVARALTWLDLQPEDRVLDLYCGMGNFTLPMGKFAKNVVGVEGVAALVAK 329 Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306 A YN N++NNV + + +E + F + +DP R+G Sbjct: 330 AGYNAELNNLNNVTFWQHNLEEDVSR------------QPWAAQGFNKVLLDPARAGAAG 377 Query: 307 ATVGMVQAYP-HILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 + + P ++Y+SCNP +L RD +L++ + +ER+ + D FP+T H+E VL R Sbjct: 378 VMAHITKLAPQRVVYVSCNPTTLARDSEILLTSGYQLERVTMLDMFPHTGHLESMVLFSR 437 Query: 365 K 365 K Sbjct: 438 K 438 >gi|163750002|ref|ZP_02157246.1| RNA methyltransferase, TrmA family protein [Shewanella benthica KT99] gi|161330276|gb|EDQ01257.1| RNA methyltransferase, TrmA family protein [Shewanella benthica KT99] Length = 462 Score = 225 bits (573), Expect = 1e-56, Method: Composition-based stats. Identities = 79/368 (21%), Positives = 151/368 (41%), Gaps = 33/368 (8%) Query: 11 EQQLAEKVDRLRQMMLAFQVPNLQIFRS----EPIHYRMRAEFHIWHDGDDLYH--IMFD 64 ++Q + K D L +M + + YR RA ++D + + Sbjct: 111 DKQRSHKQDALVSLMARLGQAEAETLAPALIGKEWGYRRRARLATFYDRNTKHTTLGFRA 170 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 + +K+ ++I + + ++ L++ + + +A L I+ + + + +V + Sbjct: 171 KASKQVIKIAHCPVLATPLSDLILPLSKVLNQLSSKKA-LGHIELIEANNGHFVVIRMTK 229 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGR-ANKTKIC-----LDRDYVDERLTVAGRTL 178 + D + +LR+ + + + G A+ T IC LD D + + Sbjct: 230 AMSD----KDTEKLREFALSHGVSLIVQGNDADLTLICDTPKMLDLDSDELPYYELDNGV 285 Query: 179 IYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAV 237 SF Q NA IN M+ + + +L+L+CG GNFSL LA V+ V Sbjct: 286 KLSFTPGSFVQVNAEINNAMVNQAVDWLSVEANERVLDLFCGVGNFSLPLANKGAEVIGV 345 Query: 238 EIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFV 297 E V+ AR N + ++ V + + + + ++ + + Sbjct: 346 EGVPEMVQQARMNATLSGLDKVSFFH---TDLSADLSTQSWLGKV----------DKLLL 392 Query: 298 DPPRSGLDDATVGMVQAYPH-ILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRH 355 DP R+G ++ + + P I+Y+SC+P SL RD +L + + +L L D FP T H Sbjct: 393 DPARAGAFESLQWLKKMKPKSIVYVSCDPASLARDSECLLKHGYKLTKLGLIDMFPQTHH 452 Query: 356 MECGVLLV 363 +E L Sbjct: 453 IEAMALFE 460 >gi|293392822|ref|ZP_06637140.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Serratia odorifera DSM 4582] gi|291424681|gb|EFE97892.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Serratia odorifera DSM 4582] Length = 449 Score = 225 bits (573), Expect = 1e-56, Method: Composition-based stats. Identities = 71/348 (20%), Positives = 129/348 (37%), Gaps = 27/348 (7%) Query: 20 RLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ--TKERMRIDYFM 77 R+ + +VP + YR RA + M +Q + + + I + Sbjct: 113 RMIERETGVRVPPEPVIAGPQYGYRRRARLGLAWQPRRQSLTMGFRQAASNDLVPISHCP 172 Query: 78 PGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIR 137 + + L+ + A + +L + + + + +V R LD Sbjct: 173 VLAPALERLLQPLHACLSSLQA-ANRLGHAELVLADNGPLLVL----RHLDALKPADRQA 227 Query: 138 LRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVH 197 L + L + + + E L F Q N +N Sbjct: 228 LLAFAEQHTLAVFLAANSERLEKLCG-----ETPYYQVDGLRLDFSPRDFIQVNDAVNQQ 282 Query: 198 MLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV 256 M+ L + D +L+L+CG GNF+L LAR V+ +E V +YN N + Sbjct: 283 MVAQALEWLELQPNDRVLDLFCGMGNFTLPLARRAKAVVGIEGVATLVANGQYNAHKNLL 342 Query: 257 NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP 316 NN + ++ + + F + +DP R+G +V+ P Sbjct: 343 NNASFFHENLEDDVER------------QPWAAQGFDKVMLDPARAGAAGVMSHIVKLAP 390 Query: 317 -HILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVLL 362 ++Y+SCNP +L RD +L+ + + R+ + D FP+T H+E L Sbjct: 391 ERVVYVSCNPSTLARDSKVLLAAGYRLARVRMLDMFPHTGHLESMALF 438 >gi|220905833|ref|YP_002481144.1| TrmA family RNA methyltransferase [Cyanothece sp. PCC 7425] gi|219862444|gb|ACL42783.1| RNA methyltransferase, TrmA family [Cyanothece sp. PCC 7425] Length = 457 Score = 225 bits (573), Expect = 1e-56, Method: Composition-based stats. Identities = 70/362 (19%), Positives = 136/362 (37%), Gaps = 41/362 (11%) Query: 23 QMMLAFQVPN--LQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGS 80 + + F+ P + P+ YR + + + + + + + + ++ Sbjct: 111 ERIGKFKHPPVAPILAAPSPLAYRNKVTYPLRQVNHRVQAGYYRKGSHRLVNLNQCPVQD 170 Query: 81 LLINALMIEMMATIRLEP-----------LLRAKLFQIDYLTSQSDQAIVT----LIYHR 125 +N L+ ++ ++ LLR ++ T + +VT L + Sbjct: 171 DRLNPLLADVKQDLQQRGWPIYDEHTHRGLLRHLSLRVGRRTGEILLTLVTTDWQLPDFK 230 Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIEN 185 + W + L R +T+ R + E+ L + Sbjct: 231 AQAEEWLQRYPALVGVCLNRNPDRTNAIFGCETRCIAGRPVLTEQFA----GLEFEIGSE 286 Query: 186 SFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 +F Q +++ +L +++ YCG G SL +AR +V+ +EI +V Sbjct: 287 TFFQVYTEQAERLVQILLERLQLQGTERIVDAYCGIGTLSLPIARQAQQVIGLEIHPATV 346 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 A+ N N + NV ++ +L +D+ + +DPPR G Sbjct: 347 AQAKQNAIRNGLTNVSFYAGPVEQ------------QLPQLDLL---PDIVVLDPPRKGC 391 Query: 305 DDATVGMVQA--YPHILYISCNPDSLCRDLSILST--THTIERLALFDQFPYTRHMECGV 360 D + V + P I+Y+SCNP +L RDL +L + +E++ D FP T H+E Sbjct: 392 DRSVVEHLSQLRPPRIVYMSCNPATLARDLHLLCQANPYELEQIQPADFFPQTAHVETLA 451 Query: 361 LL 362 L Sbjct: 452 FL 453 >gi|304310588|ref|YP_003810186.1| 23S rRNA (Uracil-5-)-methyltransferase [gamma proteobacterium HdN1] gi|301796321|emb|CBL44529.1| 23S rRNA (Uracil-5-)-methyltransferase [gamma proteobacterium HdN1] Length = 444 Score = 225 bits (573), Expect = 1e-56, Method: Composition-based stats. Identities = 84/371 (22%), Positives = 133/371 (35%), Gaps = 24/371 (6%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQV----PNLQIFRSEPIHYRMRAEFHIWHDGDD 57 +L + E Q+A K L + L+ + YR RA + Sbjct: 86 GCSLQHMRPEAQIAFKQRILESHFVRNGKLVPSQWLEPLTGPALGYRRRARLGAKYV-LK 144 Query: 58 LYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQA 117 +M + K I L+ + + L L AK +Q D A Sbjct: 145 RETMMVGFREKRSSLIADLNQCETLVPEVGHAIQDLKILLGSLDAKGRIPQVQVAQGDDA 204 Query: 118 IVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLT--VAG 175 L H +D L +Q T + +ERL + Sbjct: 205 TALLFRH--MDPLSEADQQALLGFCQQHGFQCYFQPGGENTVHRVWPSAGEERLCYRLPE 262 Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRV 234 + + FTQ N IN M+ + + +L+L+CG GNF+L LAR D V Sbjct: 263 FNIEMKFHPMDFTQVNPYINEKMVSRAVELLAPEPSERVLDLFCGLGNFTLPLARRADVV 322 Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294 + VE + V+ R N N + NV+ + L+ F Sbjct: 323 VGVEGSDALVQRGRENALHNGLQNVEFYGADLTK------------PLEHQAWAHDGFAK 370 Query: 295 IFVDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDLSILS-TTHTIERLALFDQFPY 352 I +DPPRSG + + V I+Y+SC+P +L RD + L+ + + + D FP+ Sbjct: 371 ILIDPPRSGALELVQKITVFKPKRIVYVSCDPATLARDAAELARQGYRLVVAGVMDMFPH 430 Query: 353 TRHMECGVLLV 363 T H+E + Sbjct: 431 TTHVESIAVFE 441 >gi|189424908|ref|YP_001952085.1| RNA methyltransferase, TrmA family [Geobacter lovleyi SZ] gi|189421167|gb|ACD95565.1| RNA methyltransferase, TrmA family [Geobacter lovleyi SZ] Length = 437 Score = 225 bits (573), Expect = 1e-56, Method: Composition-based stats. Identities = 90/380 (23%), Positives = 146/380 (38%), Gaps = 36/380 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAF---QVPNLQIFRSE--PIHYRMRAEFHIWHDGD 56 Y+ Q K L + + Q P + + YR RA+F + Sbjct: 76 GCDWQHISYQAQCDAKQQILIETLQRVAHLQAPAVASTAASGLDYGYRARAQFKLHATPA 135 Query: 57 DLYHIMFDQQTKERMRIDY-FMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115 L F + ++ + + + IN M+++ I+ P L +I L+ + Sbjct: 136 GLAVGFFRRGSRYVIDLPQGCPICTEPINTAMLKLRQVIQAVPDLH----RIPQLSLEEG 191 Query: 116 QAIVTLIYHRLLDDAWRECAIR--LRDALHARKYQIQLIGRANKTKICLDRDYVDER--- 170 + V + H + D R + RD L +Q IGR + ++ Sbjct: 192 ASGVVAVVHYIGSDQQRLKQLLLQHRDQLGVSGLFLQ-IGRKEALQPVFGSGHLTYPVPR 250 Query: 171 --LTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNFSLVL 227 L+ +L Y F+Q N N M++ V A +L+LYCGNGN SL L Sbjct: 251 CDLSADAMSLGYEI--GGFSQVNRLQNQKMVKLVCGYAQPAASQRMLDLYCGNGNLSLPL 308 Query: 228 ARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDI 287 + +L +E PS+ +A N VNN + + L+ + Sbjct: 309 SGAVQELLGIEGFAPSIASAVDNARQLRVNNSTFRCNDASK------------ELRHLIA 356 Query: 288 HSYRFKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSILST--THTIERL 344 F + +DPPR+G D + Q I+Y+SC+P +L RDL+ L + + Sbjct: 357 QHAVFDLVLLDPPRAGAADVARQLAQLGAQRIVYVSCDPATLARDLAALCGAAGYRLIEA 416 Query: 345 ALFDQFPYTRHMECGVLLVR 364 D FP T H+E LL R Sbjct: 417 TPLDMFPQTGHLETVALLTR 436 >gi|319954120|ref|YP_004165387.1| 23S rRNA m(5)u-1939 methyltransferase [Cellulophaga algicola DSM 14237] gi|319422780|gb|ADV49889.1| 23S rRNA m(5)U-1939 methyltransferase [Cellulophaga algicola DSM 14237] Length = 472 Score = 225 bits (573), Expect = 1e-56, Method: Composition-based stats. Identities = 72/390 (18%), Positives = 134/390 (34%), Gaps = 46/390 (11%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFHIWHDG-DDLYHIMF 63 Y+ QL K + + + + YR + EF L I Sbjct: 94 YDHQLFYKQKEVENNLRRIGHLELPEITPILGSKKQYFYRNKMEFSFSDSRWLSLDEIKS 153 Query: 64 DQQTKER--------------MRIDYFMPGSLLINALMIEMMATI------RLEPLLRAK 103 D++ K+R + I+ NA+ +E P + Sbjct: 154 DEEIKDRNALGFHIPGMWDKILDIEKCHLQEDPSNAIRLETKDFALKNDMSFFNPRNQHG 213 Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD 163 L + + + S I+ ++ D RE + + + + D Sbjct: 214 LLRTMMIRTTSTGEIMVMVQFFENDKNKRELLLNHLQLKFPEITALLYVVNEKQNDTIYD 273 Query: 164 RDYV----DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELY 217 ++ V + + L ++ SF Q N+ L + G+ G+ + +LY Sbjct: 274 QEIVCFAGRDHIFEEMEGLKFKINAKSFYQTNSDQAYE-LYKITRDFAGLTGNELVYDLY 332 Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277 G G + +A+ +V+ +E ++E A+ N N + N K Sbjct: 333 TGTGTIAQFVAKKAKKVVGIEAVPEAIEDAKANAIFNKIENTSFFAGDMKNIFN------ 386 Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSIL 335 ++ + I DPPR G+ V + A ++Y+SCN + RDL ++ Sbjct: 387 -----EEFIRENGTPDIIITDPPRDGMHKDVVAQILAIAPQKVVYVSCNSATQARDLELM 441 Query: 336 STTHTIERLALFDQFPYTRHMECGVLLVRK 365 + I + D FP T H+E VLL ++ Sbjct: 442 KDDYKITKTQAVDMFPQTHHVENVVLLEKR 471 >gi|238920899|ref|YP_002934414.1| 23S rRNA 5-methyluridine methyltransferase [Edwardsiella ictaluri 93-146] gi|259495630|sp|C5B8X6|RUMA_EDWI9 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|238870468|gb|ACR70179.1| 23S rRNA (uracil-5-)-methyltransferase RumA, putative [Edwardsiella ictaluri 93-146] Length = 438 Score = 225 bits (573), Expect = 1e-56, Method: Composition-based stats. Identities = 81/358 (22%), Positives = 135/358 (37%), Gaps = 30/358 (8%) Query: 13 QLAEKVDRLRQMMLAFQVPN--LQIFRSEPIHYRMRAEF--HIWHDGDDLYHIMFDQQTK 68 Q K L+++M + Q+ EP YR RA F + + Sbjct: 100 QQQSKSQALQRLMARETGVDIAPQVIAGEPYGYRRRARFGLQFNVKTQRVVLGFRQAASN 159 Query: 69 ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLD 128 + + + + + AL++ + + R +L ++ + + + +V R LD Sbjct: 160 DLVALKACPVLAPALEALLLPLGECLSALRA-RRRLGHLELVLADNGPLMVL----RHLD 214 Query: 129 DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFT 188 L R + L ++ + Y F Sbjct: 215 PLSLSDREALSAFARQRGLTLYLSDGGAPQRLLGEAPY------YQIDGSRLDFNPQDFI 268 Query: 189 QPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA 247 Q NA +N M+ LA +L+L+CG GNF+L LAR RV+ VE V A Sbjct: 269 QVNAAVNAQMVGQALAWLDVRADERVLDLFCGMGNFTLPLARLALRVVGVEGVPGLVATA 328 Query: 248 RYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307 + N N ++NV+ + +E S F I +DP R+G Sbjct: 329 QNNARNNGLSNVEFFHQNLEEDVTRQA------------WASQGFDKILLDPARAGAPGV 376 Query: 308 TVGMVQAYP-HILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVLLV 363 +V+ P ++Y+SCNP +L RD +L + + RL + D FP+T H+E L Sbjct: 377 MQHIVRLAPRRVVYVSCNPTTLARDSQTLLQGGYRLTRLCMLDMFPHTGHLESMALFE 434 >gi|212697151|ref|ZP_03305279.1| hypothetical protein ANHYDRO_01717 [Anaerococcus hydrogenalis DSM 7454] gi|212675926|gb|EEB35533.1| hypothetical protein ANHYDRO_01717 [Anaerococcus hydrogenalis DSM 7454] Length = 547 Score = 225 bits (573), Expect = 1e-56, Method: Composition-based stats. Identities = 78/402 (19%), Positives = 157/402 (39%), Gaps = 55/402 (13%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLA--FQVPNLQIFRSEP-IHYRMRAEFHI---WHDG 55 + YE +L K + +++++ + L I RS YR + E+ + DG Sbjct: 81 GCSYQKMGYETELLLKHNMMQKLLKNHHIDIKELSIVRSPKIKGYRNKMEYTFGDAYKDG 140 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLE-----------PLLRAKL 104 + + + E + + ++ + R + LLR + Sbjct: 141 PLVLGLHRQNRFYEIVDTEGCNIVDKDFESIRKHVQKYFREKNTSFYHKKAHTGLLRNLI 200 Query: 105 FQIDYLTSQSDQAIVT------------LIYHRLLDDAWRECAIRLRDALHARKYQIQLI 152 + T + +VT L H LL+ + R+ H + Sbjct: 201 IRKAMHTGEIMVILVTSSEKSFDPMRRDLFAHNLLNA---KTDGRIVSIYHVINDSLSDA 257 Query: 153 GRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQG 211 + + ++ + Y++E++ L ++ SF QPN + + + A Sbjct: 258 VKVDSMELLFGKKYIEEKM----NDLKFQISPFSFFQPNVFTAEKIYQKAIELANVDKNK 313 Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271 ++L+LY G G + + A+ ++ + +EI + +VE A N N + N+ + Sbjct: 314 NILDLYSGTGTITQLFAKSANKAMGIEIVEEAVEKAFDNAKENQIENIDFIAGDV----- 368 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLC 329 L+ I++ ++ + +DPPR G++ + + +YISCNP + Sbjct: 369 ----------LEKINLVKGKYDIVVLDPPREGINPKAIKKIMDINPKEFVYISCNPKTQV 418 Query: 330 RDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRKPSGWH 370 RD+ I + +E+ FDQFP +RH+E LL + + H Sbjct: 419 RDIEIFMENGYIVEKYQAFDQFPRSRHVETVALLSKLNTEHH 460 >gi|139439227|ref|ZP_01772669.1| Hypothetical protein COLAER_01683 [Collinsella aerofaciens ATCC 25986] gi|133775251|gb|EBA39071.1| Hypothetical protein COLAER_01683 [Collinsella aerofaciens ATCC 25986] Length = 482 Score = 224 bits (572), Expect = 1e-56, Method: Composition-based stats. Identities = 81/407 (19%), Positives = 141/407 (34%), Gaps = 60/407 (14%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFR----------SEPIHYRMR 46 T L Y++QLA K + ++ + + P +R + Sbjct: 93 GCTALNRPYKKQLAAKQAAMEELFASLCEREDIAVDPIRGMGVTLGDPGKYPAPRGFRHK 152 Query: 47 A--EFHIWHDGDDLYHIMFDQQTKERMRIDYFM---PGSLLI--------NALMIEMMAT 93 A F +G F++ T + + + PG+ I L I Sbjct: 153 AATPFAPGKEGAVRC-GFFERGTHKIVAVPECPVEAPGARQILNGIAREAERLHIPAFNE 211 Query: 94 IRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIG 153 + LLR + + + T DQ +VTL+ + +E + AL+ + Sbjct: 212 DKHLGLLRYAVVRCGWRT---DQVMVTLVTAQRDLPHAQEFFEAV-AALNPHIVTVAQNI 267 Query: 154 RANKTKICLDRD----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGI 209 L + Y E + + +F Q N + + + Sbjct: 268 NGRPGNAILGEETRIVYGAECMRDQLLGCEFDISPTAFYQTNPQQTELLYQLAIDGMDLQ 327 Query: 210 QGDLL-ELYCGNGNFSLVLARHFDR------VLAVEIAKPSVEAARYNIAANHVNN-VKI 261 QGD+L + YCG+G L A+ +L VE + AR N N + Sbjct: 328 QGDVLMDAYCGSGTIGLCAAKAAQDKGVGIMLLGVERNHAGIADARRNAELNGLTRSAWF 387 Query: 262 VRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HIL 319 + + ++ D ++ R + +DPPR+G + A I Sbjct: 388 MADDATDYIL------------DAADNNERVDVLSIDPPRAGSTPEFLEAACALKPRRIT 435 Query: 320 YISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 YISCNP + RDL +L + + ++ D FP+T H E +L R+ Sbjct: 436 YISCNPVTQERDLHQLLDGGYRLLKITPVDMFPHTDHTETVAVLERR 482 >gi|261822786|ref|YP_003260892.1| 23S rRNA 5-methyluridine methyltransferase [Pectobacterium wasabiae WPP163] gi|261606799|gb|ACX89285.1| RNA methyltransferase, TrmA family [Pectobacterium wasabiae WPP163] Length = 449 Score = 224 bits (572), Expect = 1e-56, Method: Composition-based stats. Identities = 77/358 (21%), Positives = 141/358 (39%), Gaps = 30/358 (8%) Query: 13 QLAEKVDRLRQMML---AFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ--T 67 Q + K L ++M ++P + P YR RA ++ + +M +Q + Sbjct: 105 QQSSKTAALMRLMTRETGVELPAASLIAGTPYAYRRRARLALYFQAKEQRLLMGYRQPNS 164 Query: 68 KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLL 127 + + I + AL+ + + ++ +L ++ + +++ +V R L Sbjct: 165 HDLVDIKACPVLRPELEALLQPLRECLSRLKAVK-RLGHVELVQAENGPLLVL----RHL 219 Query: 128 DDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSF 187 D LRD + + L A+ + V L F Sbjct: 220 DPLHPSDEQALRDFAQQQSVSVYLAPDADSLTCLHGEEPV-----YHVAGLTLAFSPRDF 274 Query: 188 TQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246 Q N +N M+ LA Q +L+L+CG GNF+L LA+ ++ VE VE Sbjct: 275 IQVNDAVNQQMVAQALAWLDVQPQDKILDLFCGMGNFTLPLAQRAASIVGVEGVTALVEK 334 Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306 R N N ++NV + ++ + + F I +DP R+G Sbjct: 335 GRENARRNALSNVTFFHQNLED------------DVTQQPWAAQGFDKILLDPARAGAAG 382 Query: 307 ATVGMVQAYP-HILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVLL 362 + + P ++Y+SCN +L RD +L+ + + +A+ D FP+T H+E L Sbjct: 383 VMEQITRLAPKRVVYVSCNATTLARDSKVLLAAGYRLANVAMLDMFPHTGHLESMALF 440 >gi|71276134|ref|ZP_00652414.1| tRNA (uracil-5-)-methyltransferase/TrmA [Xylella fastidiosa Dixon] gi|71900087|ref|ZP_00682230.1| tRNA (uracil-5-)-methyltransferase/TrmA [Xylella fastidiosa Ann-1] gi|71163052|gb|EAO12774.1| tRNA (uracil-5-)-methyltransferase/TrmA [Xylella fastidiosa Dixon] gi|71730169|gb|EAO32257.1| tRNA (uracil-5-)-methyltransferase/TrmA [Xylella fastidiosa Ann-1] Length = 468 Score = 224 bits (572), Expect = 1e-56, Method: Composition-based stats. Identities = 79/373 (21%), Positives = 136/373 (36%), Gaps = 27/373 (7%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHI-WHDGD 56 L + Q+ K L + + + + +E YR + F + W + Sbjct: 112 GCVLQHLAEDAQVVSKQRVLLESLERIGRVSPERVLPALAAESWGYRRKGRFSVRWVEKK 171 Query: 57 DLYHIMFDQQTKERM-RIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115 + F ++ + + + I ++AT+ R + QI+++ + Sbjct: 172 GRTLVGFRERDPRFVADVSVCHTVVPHVGE-KIALLATLLDSLDGRRDVPQIEFIAGDA- 229 Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175 V + R L + L + I L ++ L D V + Sbjct: 230 ---VVALTVRHLQPLSEADRLALIEFGKEHGIAIFLQSGGVESVRLLWPDEVLLAFRLKP 286 Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRV 234 + + F Q N G+N M+ L G +L+L+CG GNF+L LAR V Sbjct: 287 WDVEFVFRPLDFIQINGGLNEKMIAHALDLLGAGFGERVLDLFCGLGNFTLPLARTVGEV 346 Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294 + VE VE AR N N + N + +D F Sbjct: 347 VGVEGDIGLVERARENARRNGLGNAEFFVADLT------------RDQRDAPWMRQGFDK 394 Query: 295 IFVDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDLSIL--STTHTIERLALFDQFP 351 + +DPPRSG + + ++ + I+Y+SC+P SL RD L + + D FP Sbjct: 395 LLLDPPRSGAIEVLKQLPLKMFERIVYVSCHPGSLARDADFLVNEQGFVLRAVGAMDMFP 454 Query: 352 YTRHMECGVLLVR 364 +T H+E + R Sbjct: 455 HTAHVESIAVFDR 467 >gi|325285147|ref|YP_004260937.1| RNA methyltransferase, TrmA family [Cellulophaga lytica DSM 7489] gi|324320601|gb|ADY28066.1| RNA methyltransferase, TrmA family [Cellulophaga lytica DSM 7489] Length = 470 Score = 224 bits (572), Expect = 1e-56, Method: Composition-based stats. Identities = 69/399 (17%), Positives = 132/399 (33%), Gaps = 48/399 (12%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIW---- 52 YE QL K + + + + YR + EF Sbjct: 84 GCKWQHMGYEHQLFYKQKEVENNLTRIGHLQLPAITPILGSEKQYFYRNKMEFSFSDSRW 143 Query: 53 -----------HDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLL- 100 + + + + I + NA+ +E + Sbjct: 144 LTLDEVKSDKEIEDRNALGFHIPGMWDKILDIKKCHLQADPSNAIRLETKEFATKNNMTF 203 Query: 101 ------RAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGR 154 +L + TS + + +V + + + L + +I + Sbjct: 204 FNPRHHTGELRTLMIRTSSTGEIMVLIQFFDDHKENREALLNHLATTFPEITALLYVINQ 263 Query: 155 ANKTKICLDRDYV----DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ 210 + D+D V + + L ++ SF Q N+ L + + Sbjct: 264 -KQNDTIYDQDIVCFAGRDHIFEEMEGLQFKINPKSFYQTNSEQAYE-LYKITRDFAELS 321 Query: 211 GD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268 GD + +LY G G + +++ +V+ +E ++E A+ N N ++N K+ Sbjct: 322 GDELVYDLYTGTGTIAQFVSKKAKKVVGIEAVPEAIEDAKANAKHNKIDNTVFYAGDMKK 381 Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPD 326 + + I DPPR G+ V + A ++Y+SCN Sbjct: 382 IFN-----------PEFIAQNGTPDVIITDPPREGMHKDVVEQILAIAPNKVVYVSCNSA 430 Query: 327 SLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 + RDL +++ + I RL D FP T H+E VLL ++ Sbjct: 431 TQARDLELMNDMYEITRLQAVDMFPQTHHVENVVLLKKR 469 >gi|257783863|ref|YP_003179080.1| RNA methyltransferase, TrmA family [Atopobium parvulum DSM 20469] gi|257472370|gb|ACV50489.1| RNA methyltransferase, TrmA family [Atopobium parvulum DSM 20469] Length = 415 Score = 224 bits (572), Expect = 1e-56, Method: Composition-based stats. Identities = 81/415 (19%), Positives = 142/415 (34%), Gaps = 69/415 (16%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIW-HDG 55 L Y QL K ++ +++ EP+ YR +A G Sbjct: 16 GCEWLSVPYPIQLKRKQAQVEELLAPLASINNVTIEPIRGMDEPLAYRHKAATPFAPGKG 75 Query: 56 DDLYHIMFDQQTKERMRIDYFMP----GSLLIN-------ALMIEMMATIRLEPLLRAKL 104 + + T + + + ++N I R + LR + Sbjct: 76 RTVRSGFYASGTHQIIASKECLVEDGRARAILNDVAYLAGQFNIHAYQEDRGKGALRHAV 135 Query: 105 FQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR 164 + Y T D ++ L+ + +E LR A H I L +T L R Sbjct: 136 VRCGYAT---DDVMLVLVVNGQRLPHEQEFIAALRKA-HPELTSIFLNVNQKRTNAILGR 191 Query: 165 D----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG--------- 211 + + ++ + SF Q N + + + Sbjct: 192 ETRLLWGSTSMSDKLLNCTFEIGPTSFYQTNPQQTEALYQLAIDGALAGSKQTGATLTEA 251 Query: 212 -------------DLLELYCGNGNFSLVLARHFDR------VLAVEIAKPSVEAARYNIA 252 +L+ YCG G L LA + + V+ + +++ AR N Sbjct: 252 STQTDASAPANNLRILDAYCGTGTIGLCLAHVAEAQGVNLLLTGVDQVENNIQMARRNAR 311 Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312 N + + + + + QA+ ++ F I +DPPR+G A + Sbjct: 312 NNKLE-AEFICDDATRYMQALAKD------------GQNFDVIILDPPRAGSTPAFLKAT 358 Query: 313 Q--AYPHILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 A I+Y+SCN + RDL +L + IER+ D FP+T+H+EC V+L R Sbjct: 359 AQLAQKKIVYVSCNVVTQARDLKVLLDSGFAIERVTPVDMFPHTKHVECVVVLSR 413 >gi|271501842|ref|YP_003334868.1| TrmA family RNA methyltransferase [Dickeya dadantii Ech586] gi|270345397|gb|ACZ78162.1| RNA methyltransferase, TrmA family [Dickeya dadantii Ech586] Length = 444 Score = 224 bits (571), Expect = 2e-56, Method: Composition-based stats. Identities = 82/358 (22%), Positives = 139/358 (38%), Gaps = 30/358 (8%) Query: 13 QLAEKVDRLRQMML---AFQVPNLQIFRSEPIHYRMRAEFHIWHDGD--DLYHIMFDQQT 67 Q K L+ +M VP ++ + YR RA +++ L + Sbjct: 100 QHRSKSAALKHLMQRETGDTVPEPEVIGAAAYGYRRRARLALYYQAKTRQLQMGYRQAGS 159 Query: 68 KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLL 127 + + I + AL++ + + R +L ++ + ++ +V R L Sbjct: 160 HDLVDIRACPILHPALEALLVPLRDCLGQLRAQR-RLGHVELVLAEQGPLVVL----RHL 214 Query: 128 DDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSF 187 + L A + +A+ + CL D R+ L F Sbjct: 215 EPLCDADRHALTAFAQACGASLFAAPQADTLE-CLHGDMPSYRIA----GLSLAFSPRDF 269 Query: 188 TQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246 Q N IN M+ L Q +L+L+CG GNF+L +A+H RV+ VE VE Sbjct: 270 IQVNDDINQRMVAQALTWLELQPQDRVLDLFCGMGNFTLPMAQHAGRVVGVEGVAALVEK 329 Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306 + N N + V + +E + S F + +DP R+G Sbjct: 330 GQENAQRNGLTQVTFYHHNLEE------------DVTRQPWASMGFDKVLLDPARAGAPG 377 Query: 307 ATVGMVQAYP-HILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLL 362 +V+ P ++YISCNP +L RD +L + + + RL + D FP+T H+E L Sbjct: 378 VMPQIVKLAPRRVVYISCNPTTLARDSKVLMAAGYRLARLTMLDMFPHTGHLESMALF 435 >gi|297206333|ref|ZP_06923728.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus jensenii JV-V16] gi|297149459|gb|EFH29757.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus jensenii JV-V16] Length = 458 Score = 224 bits (571), Expect = 2e-56, Method: Composition-based stats. Identities = 67/386 (17%), Positives = 137/386 (35%), Gaps = 40/386 (10%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHDGDD 57 L Y++QL K D + + + + Q I E HYR +A++ + Sbjct: 87 LAHLSYDKQLEFKKDIVLESLRKYHPRGYQKYKVKNTIPAKENWHYRAKAQYQLEFSKGK 146 Query: 58 LYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLFQ 106 M+ ++ + + S LI+ + + + ++ + + Sbjct: 147 TKLGMYAPNSRRLIDLPEMPTQSKNTQKTERLIKKLIDKYHLPVANWRKHFDGIKTIVVR 206 Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDAL---HARKYQIQLIGRANKTKICLD 163 T + +T+ + ++L + + NKT Sbjct: 207 EAVSTGEMQVTFITIGKKINGLKKLAQEVMKLDNVVSVFQNETDWNNPQVWGNKTVKLAG 266 Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGN 222 ++ + E + L +F Q N + + +L + Y G G Sbjct: 267 KNQIIEHILDKKFAL----SPRAFFQLNPEQTEILYSEAIKLLNLTPDQVLIDAYSGVGT 322 Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282 ++ + + +V+ +E +VE A +N+ NHV N + ++ S ++ ++ Sbjct: 323 IGIIASDYVKQVIGIESIPEAVEDAMHNVKLNHVRNTEYLQGSVEKILPQLKN------- 375 Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLSILSTTHT 340 + VDPPR+GL + + + +YISCNP +L +DL +LS + Sbjct: 376 -----SGVPIDALIVDPPRTGLAKSLIKTIMQVKPESFVYISCNPSTLAQDLVMLSEVYD 430 Query: 341 IERLALFDQFPYTRHMECGVLLVRKP 366 + + D P T E LV + Sbjct: 431 VRVIENVDMLPQTARCEAIAKLVLRK 456 >gi|332532630|ref|ZP_08408506.1| 23S rRNA (uracil-5)-methyltransferase [Pseudoalteromonas haloplanktis ANT/505] gi|332037846|gb|EGI74295.1| 23S rRNA (uracil-5)-methyltransferase [Pseudoalteromonas haloplanktis ANT/505] Length = 441 Score = 224 bits (571), Expect = 2e-56, Method: Composition-based stats. Identities = 82/374 (21%), Positives = 146/374 (39%), Gaps = 31/374 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ----VPNLQIFRSEPIHYRMRAEFHIWHDG-- 55 L + QQ+ EK + Q+ F + S+P+HYR A + D Sbjct: 89 GCQLQHLEVSQQVVEKQTAVTQLFSKFAKLNSLNWQTPLLSKPVHYRRSARIAVMFDKAA 148 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115 + +K + I+ + + I L + L Sbjct: 149 KKMRVGYRASGSKNIVSINKCAVLDEVFTDVFTLFDDLINQHKALHS--ISHLQLCQSDK 206 Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175 Q V + + + ++D + + + + + + Y+ E Sbjct: 207 QNFVVIRHTKAINDDTKALVEHITKSQQFEIVWQSESDAIEHSHLAMPFYYLKE------ 260 Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDR 233 L + +F Q NA +N ML+ A ++GD LL+L+CG GNFSLVLA+ Sbjct: 261 FDLKFEFGLGNFIQVNAQVNEAMLKQA-ANWLDLKGDENLLDLFCGIGNFSLVLAKQAKS 319 Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293 V+ VE +V A N N + N + TQ+++ F++ Sbjct: 320 VIGVEGVTSAVAMAAQNAQTNSITNAQFHCFD---LTQSIQSAPWFSK---------NLD 367 Query: 294 TIFVDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDLSILS-TTHTIERLALFDQFP 351 + +DP R+G + ++ + ILY+SC+P +L RD +I+S + ++ L + FP Sbjct: 368 VLVLDPSRTGAMAVLEQLPLKQFKTILYVSCDPVTLARDSAIISQAGFDLNKIGLMNMFP 427 Query: 352 YTRHMECGVLLVRK 365 +T H+E L R+ Sbjct: 428 HTGHIETMALFQRR 441 >gi|95929630|ref|ZP_01312372.1| RNA methyltransferase, TrmA family [Desulfuromonas acetoxidans DSM 684] gi|95134327|gb|EAT15984.1| RNA methyltransferase, TrmA family [Desulfuromonas acetoxidans DSM 684] Length = 424 Score = 224 bits (571), Expect = 2e-56, Method: Composition-based stats. Identities = 91/363 (25%), Positives = 143/363 (39%), Gaps = 27/363 (7%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPNLQIFR-----SEPIHYRMRAEFHIWHDGDDLYHIMF 63 YEQQ K + + + R + YR R +F ++ + Sbjct: 81 SYEQQCRWKQQIFVDSCVRHGRIDQGVIRDLVPAPQEFGYRSRVQFKCYNSPQGFILGFY 140 Query: 64 DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIY 123 + + + + + +L I A M + + QID SD A+ T+++ Sbjct: 141 RRGSHNVIDVRHCPVIALPIAAQMTAWRTLFDGSVY-ASGVSQIDVAVG-SDDALRTIVH 198 Query: 124 HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQI 183 +R L L A + L+ K L + VD + V + Sbjct: 199 YR--GAETEAFCAWLAGCLDAVDGAV-LVQTGRKNPQILLQGQVDLAIRVDEPPMELHYG 255 Query: 184 ENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 F Q + N ++ V+ A + D +L+LYCG GNFSL LAR V+ VE P Sbjct: 256 PGGFAQVHLEQNRQLVARVIEAAEVTAQDAVLDLYCGMGNFSLPLARRAGAVVGVEDYAP 315 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302 S+ A N + N S + F RR I +DPPRS Sbjct: 316 SISYADRNRDTLGLTNATFHACSVETFLGRWRR---------------TADVIVLDPPRS 360 Query: 303 GLDDATVGMVQAYPH-ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVL 361 G +A GM++ P I+Y+SC+ +L RDL+ L+ ++T+ + D FP T H E + Sbjct: 361 GAREAVAGMMRCRPRRIVYVSCDQQTLMRDLTALAQSYTVTSIQALDMFPQTCHTEVLAV 420 Query: 362 LVR 364 L R Sbjct: 421 LDR 423 >gi|254490826|ref|ZP_05104009.1| 23S rRNA (uracil-5-)-methyltransferase [Methylophaga thiooxidans DMS010] gi|224463998|gb|EEF80264.1| 23S rRNA (uracil-5-)-methyltransferase [Methylophaga thiooxydans DMS010] Length = 445 Score = 224 bits (571), Expect = 2e-56, Method: Composition-based stats. Identities = 86/374 (22%), Positives = 139/374 (37%), Gaps = 29/374 (7%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL----QIFRSEPIHYRMRAEFHIWHDGDD 57 +L+ E QL K L + F YR +A + + Sbjct: 87 GCSLMHMAPEAQLELKQGTLAEHFTHFGNLEPLTWLPPLTGPLWGYRRKARLGVKYVTKK 146 Query: 58 LYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRA--KLFQIDYLTSQSD 115 ++ + K I +L + + + + L A ++ QI+ S+ Sbjct: 147 E-QVLVGFREKASPFIAQLSQCDVLDPRVGLRLTELGEMIAGLDAYNRIAQIEVAMDDSN 205 Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175 A+V R LD L + I T L + +L+ A Sbjct: 206 VALV----FRNLDPLSEGDKQALIAYGQEQDLWIYEQPGGPDTVAALWPE--KPQLSYAP 259 Query: 176 R-TLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDR 233 L + FTQ NAGIN M++ L + +L+L+CG GNF+L LA+ Sbjct: 260 EAGLTLNFDPSDFTQVNAGINEKMIQRALDLLDIQPEDRILDLFCGLGNFTLPLAKRVTE 319 Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293 V+ VE V+ A+ N N + N + + + LKD F Sbjct: 320 VVGVEGDLALVKHAQNNALLNQLTNAEFEQADLTQ-----------TELKDYPWAQKGFN 368 Query: 294 TIFVDPPRSGLDDATVGMV-QAYPHILYISCNPDSLCRDLSIL--STTHTIERLALFDQF 350 I +DPPRSG + + ++Y+SCNP +L RD L +T+E + D F Sbjct: 369 KILLDPPRSGAFEVLHQLADLGAERLVYVSCNPATLARDAGELVNKHGYTMEAAGIMDMF 428 Query: 351 PYTRHMECGVLLVR 364 P+T H+E + + Sbjct: 429 PHTNHVESIAVFTK 442 >gi|78223042|ref|YP_384789.1| 23S rRNA methyltransferase/RumA [Geobacter metallireducens GS-15] gi|78194297|gb|ABB32064.1| 23S rRNA m(5)U-1939 methyltransferase [Geobacter metallireducens GS-15] Length = 440 Score = 224 bits (571), Expect = 2e-56, Method: Composition-based stats. Identities = 84/378 (22%), Positives = 144/378 (38%), Gaps = 30/378 (7%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-----IFRSEPIHYRMRAEFHIWHDGD 56 T Y+ QL K + + F + + P YR R +F + Sbjct: 76 GCTWQHLSYDDQLEAKERIVGDTLWRFGRIESERVARAVPSDSPYGYRSRVQFKVRWTAG 135 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLL---RAKLFQIDYLTSQ 113 L + + + + I G + N+ + +++A IR ++ Q+D Sbjct: 136 KLQMGFYRRGSHYVVDI---PEGCAICNSALNQVLAEIRPVISCFAEPDRIPQVDVAVGD 192 Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTV 173 + + Y D R R L A GR + D + R Sbjct: 193 DGVTLAVVHYIGDNRDRARAHFTACRSDLPAVGGLHLQCGRKESIEPLWGDDALTYRFPG 252 Query: 174 AGR----TLIYRQIENSFTQPNAGINVHMLEWV-LAATKGIQGDLLELYCGNGNFSLVLA 228 ++ F+Q N N +L V A + LL+L+CGNGNF++ L+ Sbjct: 253 DFLPKLPSMTLSFSRGGFSQVNYRQNRELLRAVHRMADLTGEERLLDLFCGNGNFAIPLS 312 Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288 R+ V+ +E PS+E AR N AAN ++ +R + + + + Sbjct: 313 RYAMAVVGIEDYGPSLEDARRNAAANGAGKIEFIRSDAAAGVRQLVSREK---------- 362 Query: 289 SYRFKTIFVDPPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDLSILST-THTIERLAL 346 + + +DPPR+G +A + P ++Y+SC+P +L RDL + + + Sbjct: 363 --HYSVVVLDPPRTGAKEAVTEVTSLRPERVVYVSCDPATLGRDLGLFRKSGYDVRECLP 420 Query: 347 FDQFPYTRHMECGVLLVR 364 D FP T H+E LL R Sbjct: 421 VDMFPQTFHIESVTLLSR 438 >gi|113460243|ref|YP_718301.1| 23S rRNA 5-methyluridine methyltransferase [Haemophilus somnus 129PT] gi|123327082|sp|Q0I127|RUMA_HAES1 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|112822286|gb|ABI24375.1| 23S rRNA m(5)U-1939 methyltransferase [Haemophilus somnus 129PT] Length = 439 Score = 224 bits (571), Expect = 2e-56, Method: Composition-based stats. Identities = 85/360 (23%), Positives = 151/360 (41%), Gaps = 30/360 (8%) Query: 13 QLAEKVDRLRQMMLAFQVPNLQ---IFRSEPIHYRMRAEFHIWHDGD--DLYHIMFDQQT 67 Q K L Q + Q ++ + E HYR R ++ D +L + + Sbjct: 100 QRETKQKALFQRLTKLQKEAIEFMPMISGEAWHYRRRVRLSLYWDAKSKNLKIGFRQKNS 159 Query: 68 KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLL 127 ++ + I L+N L+ ++ + + L I+ + + + A++ + +L Sbjct: 160 QQIVNIRQCDVLDPLLNELLPKLHELLSTWSKPKT-LGHIELVAADNGVAMLLRVTEKLA 218 Query: 128 DDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSF 187 + L D A +Q+ L + K L D +L L + F Sbjct: 219 E----HDRTLLLDF--AFNHQVMLFVQDEKEICHLQGDLPYYQLDDGSI-LHFDI--RDF 269 Query: 188 TQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246 Q N +N +M+ L + D +L+L+CG GNF+L ++R+ + +E P VE Sbjct: 270 IQVNRQLNQNMVNTALDWLDLKKKDNVLDLFCGMGNFTLPISRYVKSAVGIEGVLPMVEK 329 Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306 AR N NH +NV+ + + + + F I +DPPRSG Sbjct: 330 ARRNGERNHCHNVQFYQCDLSQ------------SFTEQEWAKVPFDKILLDPPRSGAAF 377 Query: 307 ATVGMV-QAYPHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364 A + I+Y+SCNP +L RD+ +L + ++++A+ D FP+T H+E L R Sbjct: 378 ALNALCYLMAEKIVYVSCNPATLVRDVELLLKFGYQLKKVAMIDMFPHTSHLESISLFER 437 >gi|260599136|ref|YP_003211707.1| 23S rRNA m(5)U1939 methyltransferase [Cronobacter turicensis z3032] gi|260218313|emb|CBA33301.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Cronobacter turicensis z3032] Length = 486 Score = 224 bits (571), Expect = 2e-56, Method: Composition-based stats. Identities = 80/368 (21%), Positives = 135/368 (36%), Gaps = 30/368 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHI 61 E Q K L +MM ++ YR RA + Sbjct: 143 GCQQQHASVELQQRSKAQALGRMMKR---EVDEVISGPAWGYRRRARLSLNFSPRKPGLQ 199 Query: 62 MFDQ--QTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119 M + + + + + + AL+ ++ + +R L ++ + S +V Sbjct: 200 MGFRKAGSNDLVDVHRCPVLVPRLEALLPKLRECLSSLNGVRH-LGHVELVDVTSGPLMV 258 Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179 R L +L H+ + L ++ + E L Sbjct: 259 L----RHLKPLNACDREKLECFSHSEGVALYLAPESDTLENLNG-----EMPWYEFDGLR 309 Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVE 238 F Q N +N M+ L G+ +L+L+CG GNF+L LAR + V+ VE Sbjct: 310 LTFSPRDFIQVNDAVNQQMVARALEWLDIQPGERVLDLFCGMGNFTLPLARRAESVVGVE 369 Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298 VE YN N + NV + + +E + F + +D Sbjct: 370 GVAALVEKGSYNAGLNTLKNVTFFQHNLEE------------DVTRQPWAQQGFDKVLLD 417 Query: 299 PPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHM 356 P R+G +V+ P ++Y+SCNP +L RD ++L+ + RLA+ D FP+T H+ Sbjct: 418 PARAGAAGVMQHIVKLKPRRVVYVSCNPSTLMRDSEALLAAGYRTGRLAMLDMFPHTSHL 477 Query: 357 ECGVLLVR 364 E L R Sbjct: 478 ESMALFER 485 >gi|70731793|ref|YP_261535.1| 23S rRNA 5-methyluridine methyltransferase [Pseudomonas fluorescens Pf-5] gi|91207808|sp|Q4K898|RUMA_PSEF5 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|68346092|gb|AAY93698.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Pseudomonas fluorescens Pf-5] Length = 450 Score = 224 bits (571), Expect = 2e-56, Method: Composition-based stats. Identities = 85/371 (22%), Positives = 146/371 (39%), Gaps = 30/371 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWHD--G 55 ++ +++QLA K L + + + YR RA + D G Sbjct: 99 GCSVQHLPHDEQLALKQRMLAEQLSKVAGVEPEAWAAPLSGPEFGYRRRARVAVRWDAKG 158 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115 L +++ + ID + +M + A +R +A L ++ + + Sbjct: 159 KQLEVGFRAAGSQDIVAIDDCPVLVQALQPVMNRLPAMLRRLSKPQA-LGHVELFSGSA- 216 Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175 V L + L D+ L+D + Q+ L G + + RL Sbjct: 217 -LAVLLRHMAPLSDS---DLTILKDFCDFHQAQLWLHGEGEPQPFDPSQ-ALGYRLETWD 271 Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRV 234 L YR F Q NAG+N M+ L + +L+L+CG GNF+L LAR V Sbjct: 272 LHLAYR--PGDFVQVNAGVNEAMVAQALEWLAPQADERVLDLFCGLGNFALPLARQVREV 329 Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294 +AVE V A N A+N+++N + + + L + F Sbjct: 330 VAVEGVATMVARAAENAASNNLHNTRFFQADLSQ------------PLSAAEWADEGFSA 377 Query: 295 IFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRD-LSILSTTHTIERLALFDQFPY 352 + +DPPR G + + ++Y+SCNP +L RD + ++ + ++R + D FP Sbjct: 378 VLLDPPRDGAFEVVRQLATLGAKRLVYVSCNPATLARDTVELIKQGYRLKRAGILDMFPQ 437 Query: 353 TRHMECGVLLV 363 T H+E L Sbjct: 438 TAHVEAMALFE 448 >gi|87124488|ref|ZP_01080337.1| hypothetical protein RS9917_12780 [Synechococcus sp. RS9917] gi|86168060|gb|EAQ69318.1| hypothetical protein RS9917_12780 [Synechococcus sp. RS9917] Length = 461 Score = 224 bits (571), Expect = 2e-56, Method: Composition-based stats. Identities = 94/398 (23%), Positives = 154/398 (38%), Gaps = 54/398 (13%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQV------PNLQIFRSEPIHYRMRAEFHIWHDG 55 TL Q A K DRL Q + P P+ YR RA + D Sbjct: 86 GCTLQHWDNAHQSAWKRDRLVQTLSRIGGLHHPVDPLEPSEMGPPLGYRNRALLPLQRDS 145 Query: 56 DDL-YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-LRAKLFQID----- 108 + + + + + + +++ ++ L+ + A ++ A L Q D Sbjct: 146 EGQLRLGYYKRGSHQLVNLNHCPVLDPGLDELLAPLKADLQATGWPADADLHQGDGLRHL 205 Query: 109 --YLTSQSDQAIVTLI--------YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKT 158 L ++S + ++TLI HR L W + +++ + + +T Sbjct: 206 GLRLATRSREVLITLISSTAELPGVHR-LAQGWCDRWPQVKGVTLNLQPRRTNTVLGPQT 264 Query: 159 KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML----EWVLAATKGIQGDLL 214 V+E TL +F Q N + +W+L+ I ++ Sbjct: 265 LTLAGAGTVEETFCGLQLTL----ASTTFFQVNTTEAERAVLSLSQWLLSQAGPIA--VI 318 Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274 + YCG G +L LA VL +E+ + SVE AR N N + V + + Sbjct: 319 DAYCGIGTIALPLAAAGHSVLGLEVHQASVEQARRNAEHNGLTGVCFLAGDVQH------ 372 Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDL 332 + + + + VDPPR GLD + + A P + Y+SC+P +L RDL Sbjct: 373 ---------HLAEALPQHQALVVDPPRKGLDPSVTEQILACPPRWLAYLSCDPATLARDL 423 Query: 333 SILST---THTIERLALFDQFPYTRHMECGVLLVRKPS 367 + L+ + I RL FD FP T H+EC LL R S Sbjct: 424 ARLAGPEAPYRIHRLQPFDFFPQTSHLECLALLERVSS 461 >gi|170718282|ref|YP_001785299.1| 23S rRNA 5-methyluridine methyltransferase [Haemophilus somnus 2336] gi|168826411|gb|ACA31782.1| RNA methyltransferase, TrmA family [Haemophilus somnus 2336] Length = 439 Score = 224 bits (571), Expect = 2e-56, Method: Composition-based stats. Identities = 85/360 (23%), Positives = 150/360 (41%), Gaps = 30/360 (8%) Query: 13 QLAEKVDRLRQMMLAFQVPNLQ---IFRSEPIHYRMRAEFHIWHDGD--DLYHIMFDQQT 67 Q K L Q + Q ++ + E HYR R ++ D L + + Sbjct: 100 QRETKQKALFQRLTKLQKEAIEFMPMISGEAWHYRRRVRLSLYWDAKSKKLKIGFRQKNS 159 Query: 68 KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLL 127 ++ + I L+N L+ ++ + + L I+ + + + A++ + +L Sbjct: 160 QQIVNIRQCDVLDPLLNELLPKLHELLSTCSKPKT-LGHIELVAADNGVAMLLRVTEKLA 218 Query: 128 DDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSF 187 + L D A +Q+ L + K L D +L L + F Sbjct: 219 E----HDRTLLLDF--AFNHQVMLFVQDEKEICHLQGDLPYYQLDDGSI-LHFDI--RDF 269 Query: 188 TQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246 Q N +N +M+ L + D +L+L+CG GNF+L ++R+ + +E P VE Sbjct: 270 IQVNRQLNQNMVNTALDWLDLKKKDNVLDLFCGMGNFTLPISRYVKSAVGIEGVLPMVEK 329 Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306 AR N NH +NV+ + + + + F I +DPPRSG Sbjct: 330 ARRNGERNHCHNVQFYQCDLSQ------------SFTEQEWAKVPFDKILLDPPRSGAAF 377 Query: 307 ATVGMV-QAYPHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364 A + I+Y+SCNP +L RD+ +L + ++++A+ D FP+T H+E L R Sbjct: 378 ALNALCYLMAEKIVYVSCNPATLVRDVELLLKFGYQLKKVAMIDMFPHTSHLESISLFER 437 >gi|285019297|ref|YP_003377008.1| 23s rrna (uracil-5-)-methyltransferase [Xanthomonas albilineans GPE PC73] gi|283474515|emb|CBA17016.1| probable 23s rrna (uracil-5-)-methyltransferase protein [Xanthomonas albilineans] Length = 467 Score = 224 bits (570), Expect = 2e-56, Method: Composition-based stats. Identities = 87/373 (23%), Positives = 150/373 (40%), Gaps = 27/373 (7%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWHDGDD 57 L +QQ+ K L + Q+ YR + F + Sbjct: 112 GCVLQHLAEDQQILAKQQVLTDNLERIGHVTPQVVLPALSGASWGYRRKGRFSVRRVEKK 171 Query: 58 LYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAK--LFQIDYLTSQSD 115 ++ + ++ + +I + +++ A L L AK + QI+++ + Sbjct: 172 DKTLV-GFREQDPRFVADLSVCHTVIPQVGLKVAALAELVERLDAKRDIPQIEFIAGDAT 230 Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175 A+ T + + L + ++ I A H +Q G + + + RL Sbjct: 231 VAL-TFRHMQPLSEHDQDALIAFAQA-HDFAIFLQPAGVDSVHPLYPQAAPLSFRLPQWD 288 Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRV 234 L +R F Q NA +N M+ LA GD +L+L+CG GNF+L LAR V Sbjct: 289 VELAFR--PLDFIQVNAVLNQQMIAHALALLDAQSGDRVLDLFCGLGNFTLPLARTVREV 346 Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294 + VE V AR N N ++N + + + TQ R+ + F Sbjct: 347 VGVEGDAGLVTRARENAQRNGLDNAQFF---AADLTQDQRQAPWMRQ---------GFDK 394 Query: 295 IFVDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDLSIL--STTHTIERLALFDQFP 351 + +DPPRSG + + ++ + I+Y+SC+P SL RD S L + ++ D FP Sbjct: 395 LLLDPPRSGALEVLQQLPLKQFQRIVYVSCHPGSLARDASYLVNTQGFVLKAAGAMDMFP 454 Query: 352 YTRHMECGVLLVR 364 +T H+E + R Sbjct: 455 HTAHVESIAVFER 467 >gi|325849101|ref|ZP_08170593.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325480346|gb|EGC83409.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 508 Score = 224 bits (570), Expect = 2e-56, Method: Composition-based stats. Identities = 72/375 (19%), Positives = 157/375 (41%), Gaps = 36/375 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMM---LAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDL 58 +++ Y+ Q+ K + ++ + Q+ ++++ +S+ +YR + I DG Sbjct: 76 GCSIMDINYKSQIKLKENLIKNALLKSAKIQLEDIEVLQSKEFYYRNKIRLQITKDGKLA 135 Query: 59 YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAI 118 Y+ + + + + I + + LI + ++ + + + ++ +T +++ Sbjct: 136 YNKKY---SNDLIEIKDCLLANDLIRENLGKI--ENISKEISKNYPNSLEEITIRANDEE 190 Query: 119 VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTL 178 + L + + +++ + I LI + K I +DY+ L Sbjct: 191 ILLNIKIKDEKIIPYIKKQYKNS----SFNINLINKKEKLNIS-GKDYLIYNLLDK---- 241 Query: 179 IYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVE 238 ++ N F Q N + + + G +L+L+CG+ S+ + + D V+ +E Sbjct: 242 KFKISMNDFYQVNDYMTEKLYKTA-KNFLGEDQKVLDLFCGSATSSIAI--NDDHVVGIE 298 Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298 I K +++ A+ N N + + K + ++ N + I + I VD Sbjct: 299 INKNAIKDAKENAKINGLKDYKFIAKNA-------------NYIDHKFIKKEKIDAIVVD 345 Query: 299 PPRSGLDDATVGMVQAYPHI--LYISCNPDSLCRDLSILS-TTHTIERLALFDQFPYTRH 355 PPR+GLD + + +YISCNP +L RD++ + +E++ D F T H Sbjct: 346 PPRAGLDKEIIKTIAKTKIKKIVYISCNPQTLARDINRFQNKGYKLEKIKGCDMFSQTMH 405 Query: 356 MECGVLLVRKPSGWH 370 +E LL + H Sbjct: 406 VETVALLSKLDIDKH 420 >gi|190575407|ref|YP_001973252.1| 23S rRNA 5-methyluridine methyltransferase [Stenotrophomonas maltophilia K279a] gi|226725396|sp|B2FPX2|RUMA_STRMK RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|190013329|emb|CAQ46963.1| conserved hypothetical protein [Stenotrophomonas maltophilia K279a] Length = 444 Score = 224 bits (570), Expect = 2e-56, Method: Composition-based stats. Identities = 91/377 (24%), Positives = 140/377 (37%), Gaps = 33/377 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL----QIFRSEPIHYRMRAEFHIWH--DG 55 L +QQ+ K L + E YR + F + Sbjct: 88 GCVLQHLDEDQQIVAKQRVLMDNLERIGHVKPGKVLAPLVGESWGYRRKGRFSVRRVEKK 147 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115 D +Q + + + I +E ++T + + QI+++ D Sbjct: 148 DKTLVGFREQDPRFVADLSQCLTVIPEI-GTKVEALSTFIESLDGKRDIPQIEFIAG--D 204 Query: 116 QAIVTLIYH-RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVD--ERLT 172 QA+V + H + L DA R + I L T LD V RL Sbjct: 205 QAVVLTVRHLQPLSDADRAAWAAFGQ---QHGFVIYLQSGGVDTVQPLDGQGVPLSFRLA 261 Query: 173 VAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHF 231 L +R F Q NA +N M+ L G +L+L+CG GNF+L LAR Sbjct: 262 PWDVELAFR--PLDFIQVNAKLNEKMIAHALDLLEPGEDERVLDLFCGLGNFTLPLARRV 319 Query: 232 DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291 V+ VE V AR N N + N + S + TQ R + Sbjct: 320 REVVGVEGDAGLVARARENAVRNGLANAQFF---SADLTQDQRSTPWMRQ---------G 367 Query: 292 FKTIFVDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDLSIL--STTHTIERLALFD 348 F + +DPPRSG + + ++ + I+Y+SC+P SL RD L T+ D Sbjct: 368 FDKLLLDPPRSGAIEVLQQLPLKQFKRIVYVSCHPGSLARDAGYLVNEQGFTLVSAGAMD 427 Query: 349 QFPYTRHMECGVLLVRK 365 FP+T H+E + ++ Sbjct: 428 MFPHTAHVESIAVFEKR 444 >gi|293569131|ref|ZP_06680438.1| hypothetical RNA methyltransferase [Enterococcus faecium E1071] gi|291588178|gb|EFF20019.1| hypothetical RNA methyltransferase [Enterococcus faecium E1071] Length = 245 Score = 224 bits (570), Expect = 2e-56, Method: Composition-based stats. Identities = 63/259 (24%), Positives = 112/259 (43%), Gaps = 27/259 (10%) Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGR-------ANKTKICLDRDYVDE 169 +V L+ + +E A + + L IQ I +K K+ RDY+++ Sbjct: 1 MMVVLVTRKEKFFKSKEIAEAIHEELPEVVSVIQNINEEKTNVILGDKEKVLYGRDYIED 60 Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLA 228 +L YR SF Q N ++ + + + + D +++ Y G G L LA Sbjct: 61 QLLGK----TYRISAKSFYQVNTQQAEYLYQTAIEFAELDKKDIVIDAYSGIGTIGLSLA 116 Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288 D+V +E+ ++E A++N N + NV +++ + + Sbjct: 117 DRVDKVYGMEVIPEAIEDAQFNSLNNKIENVHYEVGKAEKVMKKWQE------------K 164 Query: 289 SYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCRDLSILST-THTIERLA 345 + I VDPPR GLD + ++ P I+YISCNP + RD +L+ + ++++ Sbjct: 165 GVKPSVIVVDPPRKGLDHHFIESAIEMSPERIVYISCNPATFARDAKLLAEAGYVVKKVQ 224 Query: 346 LFDQFPYTRHMECGVLLVR 364 D FP T H+E V+ Sbjct: 225 PVDLFPQTHHIELVASFVK 243 >gi|256851520|ref|ZP_05556909.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus jensenii 27-2-CHN] gi|260660943|ref|ZP_05861858.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus jensenii 115-3-CHN] gi|282932756|ref|ZP_06338162.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus jensenii 208-1] gi|256616582|gb|EEU21770.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus jensenii 27-2-CHN] gi|260548665|gb|EEX24640.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus jensenii 115-3-CHN] gi|281303112|gb|EFA95308.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus jensenii 208-1] Length = 458 Score = 224 bits (570), Expect = 2e-56, Method: Composition-based stats. Identities = 67/386 (17%), Positives = 137/386 (35%), Gaps = 40/386 (10%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHDGDD 57 L Y++QL K D + + + + Q I E HYR +A++ + Sbjct: 87 LAHLSYDKQLEFKKDIVLESLRKYHPRGYQKYKVKNTIPAKENWHYRAKAQYQLEFSKGK 146 Query: 58 LYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLFQ 106 M+ ++ + + S LI+ + + + ++ + + Sbjct: 147 TKLGMYTPNSRRLIDLPEMPTQSKNTQKTERLIKKLIDKYHLPVANWRKHFDGIKTIVVR 206 Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDAL---HARKYQIQLIGRANKTKICLD 163 T + +T+ + ++L + + NKT Sbjct: 207 EAVSTGEMQVTFITIGKKINGLKKLAQEVMKLDNVVSVFQNETDWNNPQVWGNKTVKLAG 266 Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGN 222 ++ + E + L +F Q N + + +L + Y G G Sbjct: 267 KNQIIEHILDKKFAL----SPRAFFQLNPEQTEILYSEAIKLLNLTPDQVLIDAYSGVGT 322 Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282 ++ + + +V+ +E +VE A +N+ NHV N + ++ S ++ ++ Sbjct: 323 IGIIASDYVKQVIGIESIPEAVEDAMHNVKLNHVRNTEYLQGSVEKILPQLKN------- 375 Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLSILSTTHT 340 + VDPPR+GL + + + +YISCNP +L +DL +LS + Sbjct: 376 -----SGVPIDALIVDPPRTGLAKSLIKTIMQVKPESFVYISCNPSTLAQDLVMLSEVYD 430 Query: 341 IERLALFDQFPYTRHMECGVLLVRKP 366 + + D P T E LV + Sbjct: 431 VRVIENVDMLPQTARCEAIAKLVLRK 456 >gi|238750559|ref|ZP_04612059.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Yersinia rohdei ATCC 43380] gi|238711207|gb|EEQ03425.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Yersinia rohdei ATCC 43380] Length = 433 Score = 224 bits (570), Expect = 2e-56, Method: Composition-based stats. Identities = 74/365 (20%), Positives = 140/365 (38%), Gaps = 32/365 (8%) Query: 12 QQLAE--KVDRLRQMM---LAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66 QL + K D L+++M + YR RA +++ M Q Sbjct: 87 SQLQQGSKADSLQRLMVRETGGCPTLAPVICGPEYGYRRRARLGLFYQPKQHRLQMGFHQ 146 Query: 67 T--KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 T + + I + L+ + + +R +L ++ + + + +V Sbjct: 147 TESHDLVSITRCPVLRPELERLLQPLYQCLSTLQAVR-RLGHVELVLADNGPLLVL---- 201 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 R LD L + + + L G ++ + E L Sbjct: 202 RHLDTLKEVDRAALIEFATREQVAVYLAGDSDNLEKLFG-----EEPYYQIEGLRLAFHP 256 Query: 185 NSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 F Q N +N M+ + +L+L+CG GNF+L LA+ V+ VE Sbjct: 257 RDFIQVNDAVNQQMVAQAIEWLDVQPDERVLDLFCGMGNFTLPLAKLAREVVGVEGVAAL 316 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 V +YN +N + NV + + + + + F + +DP R+G Sbjct: 317 VANGQYNARSNTLPNVSFFHENLE------------SDISCQPWAAQGFDKVLLDPARAG 364 Query: 304 LDDATVGMVQAYP-HILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVL 361 +V+ P ++Y+SCNP +L RD +L+ + + ++ + D FP+T H+E L Sbjct: 365 ASGVMSHIVKLAPKRVVYVSCNPTTLARDSQVLLAAGYRLAQVRMLDMFPHTGHLESMAL 424 Query: 362 LVRKP 366 +++P Sbjct: 425 FMQEP 429 >gi|238854930|ref|ZP_04645260.1| 23S rRNA-methyltransferase RumA [Lactobacillus jensenii 269-3] gi|260664217|ref|ZP_05865070.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus jensenii SJ-7A-US] gi|282931642|ref|ZP_06337135.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus jensenii 208-1] gi|238832720|gb|EEQ25027.1| 23S rRNA-methyltransferase RumA [Lactobacillus jensenii 269-3] gi|260562103|gb|EEX28072.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus jensenii SJ-7A-US] gi|281304253|gb|EFA96362.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus jensenii 208-1] Length = 458 Score = 224 bits (570), Expect = 2e-56, Method: Composition-based stats. Identities = 70/388 (18%), Positives = 139/388 (35%), Gaps = 41/388 (10%) Query: 5 LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHDGDD 57 L Y++QL K D + + + + Q I E HYR +A++ + Sbjct: 87 LAHLSYDKQLEFKKDIVLESLRKYHPRGYQKYKVKNTIPAKENWHYRAKAQYQLEFSKGK 146 Query: 58 LYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLFQ 106 M+ ++ + + S LI+ + + + ++ + + Sbjct: 147 TKLGMYAPNSRRLIDLPEMPTQSKNTQKTERLIKKLIDKYHMPVANWRKHFDGIKTVVVR 206 Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDAL---HARKYQIQLIGRANKTKICLD 163 T + +T+ + ++L + + NKT Sbjct: 207 EAASTGEMQVTFITIGKKINGLKKLAQEVMKLDNVVSVFQNETDWNNPQIWGNKTIKLAG 266 Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGN 222 ++ + E + L +F Q N + + +L + Y G G Sbjct: 267 KNQIVEHILDKKFAL----SPRAFFQLNPEQTEILYSEAIKLLNLAPDQVLIDAYSGVGT 322 Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282 L+ + + +V+ +E +VE A +N+ NHV N + ++ S ++ ++ Sbjct: 323 IGLIASDYVKQVIGIESIPEAVEDAMHNVKLNHVRNAEYLQGSVEKILPQLKN------- 375 Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLSILSTTHT 340 + VDPPR+GL + + + +YISCNP +L +DL +LS + Sbjct: 376 -----SGVPIDALIVDPPRTGLAKSLIKTIMQVKPESFVYISCNPSTLAQDLVMLSEVYD 430 Query: 341 IERLALFDQFPYTRHMECGVLLV-RKPS 367 + + D P T E LV RK + Sbjct: 431 VRVIENVDMLPQTARCEAIAKLVLRKDN 458 >gi|21230734|ref|NP_636651.1| 23S rRNA 5-methyluridine methyltransferase [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66769270|ref|YP_244032.1| 23S rRNA 5-methyluridine methyltransferase [Xanthomonas campestris pv. campestris str. 8004] gi|23822130|sp|Q8PB48|RUMA_XANCP RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|81304771|sp|Q4USG1|RUMA_XANC8 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|21112328|gb|AAM40575.1| RNA methyltransferase [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66574602|gb|AAY50012.1| RNA methyltransferase [Xanthomonas campestris pv. campestris str. 8004] Length = 444 Score = 224 bits (570), Expect = 3e-56, Method: Composition-based stats. Identities = 82/376 (21%), Positives = 136/376 (36%), Gaps = 31/376 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRS----EPIHYRMRAEFHIWH--DG 55 L + QQ+ K L + Q + YR + F + Sbjct: 88 GCVLQHLEESQQIVAKQRVLMDNLERIGHVTPQTVLPALVGDTWGYRRKGRFSVRRVEKK 147 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115 D + + + I + ++ A + + + QI+++ Sbjct: 148 DKTLVGFRELDPRFVADLSVCYTVIPQIGEKIPQLAALVEGMD-GKRDIPQIEFIAGDDA 206 Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL--DRDYVDERLTV 173 A+ R L L + A + I L + L + RL Sbjct: 207 VALTI----RHLQPLSARDEQALVEFAQAHDFAIFLQPGGVDSVHPLWPQEVPLSFRLPK 262 Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFD 232 L +R F Q NA +N M+ LA D +L+L+CG GNF+L LAR Sbjct: 263 WDVELAFR--PLDFIQVNASLNQKMIAHALALLDAKPDDRVLDLFCGLGNFTLPLARTVR 320 Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292 V+ VE V AR N N ++N + + + TQ R+ + F Sbjct: 321 EVVGVEGDAGLVARARENAQRNGLDNAQFY---AADLTQDQRQTAWMRQ---------GF 368 Query: 293 KTIFVDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDLSIL--STTHTIERLALFDQ 349 + +DPPRSG D + ++ + I+Y+SC+P SL RD L ++ D Sbjct: 369 DKLLLDPPRSGAIDVLQQLPLKQFKRIVYVSCHPGSLARDAGYLVNEQGFSLLSAGAMDM 428 Query: 350 FPYTRHMECGVLLVRK 365 FP+T H+E + ++ Sbjct: 429 FPHTAHVESIAVFEKR 444 >gi|317491024|ref|ZP_07949460.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterobacteriaceae bacterium 9_2_54FAA] gi|316920571|gb|EFV41894.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterobacteriaceae bacterium 9_2_54FAA] Length = 438 Score = 223 bits (569), Expect = 3e-56, Method: Composition-based stats. Identities = 80/371 (21%), Positives = 145/371 (39%), Gaps = 32/371 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ---IFRSEPIHYRMRAEFHIWHDGDDL 58 Q K L+++++ N+ + YR RA + Sbjct: 89 GCQQQHASVPLQQQSKSASLQRLIIRETEVNIIPESVISGPEYGYRRRARLGLQFLSKQQ 148 Query: 59 YHIMFDQQ--TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116 +M +Q + + + + + +L+ + A + +R +L + + + + Sbjct: 149 QLVMGFRQAGSNDLVPVKECPILVPALASLLQPLQACLAGMKAVR-RLGHAELVQADNGC 207 Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGR-ANKTKICLDRDYVDERLTVAG 175 +V R L+ + RL D + L G K+C + + Sbjct: 208 VLVL----RHLEALKEQDLARLHDFGAQHDVMVYLQGNEGELVKLCGESPF------YQV 257 Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRV 234 L F Q N IN M+ L D +L+L+CG GNF+L LA+ +V Sbjct: 258 DELRLFFSPRDFIQVNDAINQQMVAQALEWLDVQSTDRVLDLFCGMGNFTLPLAKRAKQV 317 Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294 + VE VE YN N +NNV+ + + ++ + F+ Sbjct: 318 VGVEGVATLVENGLYNAHINALNNVEFFQHNLED------------DVTRQPWAKLGFEK 365 Query: 295 IFVDPPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPY 352 + +DP R+G +V+ P ++Y+SCNP +L RD +L + + +ER+ + D FP+ Sbjct: 366 VLLDPARAGAAGVMTHIVKLAPEKVVYVSCNPTTLARDSKVLIAAGYRMERVRMLDMFPH 425 Query: 353 TRHMECGVLLV 363 T H+E L V Sbjct: 426 TGHLESMALFV 436 >gi|188992421|ref|YP_001904431.1| 23S rRNA 5-methyluridine methyltransferase [Xanthomonas campestris pv. campestris str. B100] gi|167734181|emb|CAP52389.1| RNA methyltransferase [Xanthomonas campestris pv. campestris] Length = 470 Score = 223 bits (569), Expect = 3e-56, Method: Composition-based stats. Identities = 82/376 (21%), Positives = 136/376 (36%), Gaps = 31/376 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRS----EPIHYRMRAEFHIWH--DG 55 L + QQ+ K L + Q + YR + F + Sbjct: 114 GCVLQHLEESQQIVAKQRVLMDNLERIGHVTPQTVLPALVGDTWGYRRKGRFSVRRVEKK 173 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115 D + + + I + ++ A + + + QI+++ Sbjct: 174 DKTLVGFRELDPRFVADLSVCYTVIPQIGEKIPQLAALVEGMD-GKRDIPQIEFIAGDDA 232 Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL--DRDYVDERLTV 173 A+ R L L + A + I L + L + RL Sbjct: 233 VALTI----RHLQPLSARDEQALVEFAQAHDFAIFLQPGGVDSVHPLWPQEVPLSFRLPK 288 Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFD 232 L +R F Q NA +N M+ LA D +L+L+CG GNF+L LAR Sbjct: 289 WDVELAFR--PLDFIQVNASLNQKMIAHALALLDAKPDDRVLDLFCGLGNFTLPLARTVR 346 Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292 V+ VE V AR N N ++N + + + TQ R+ + F Sbjct: 347 EVVGVEGDAGLVARARENAQRNGLDNAQFY---AADLTQDQRQTAWMRQ---------GF 394 Query: 293 KTIFVDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDLSIL--STTHTIERLALFDQ 349 + +DPPRSG D + ++ + I+Y+SC+P SL RD L ++ D Sbjct: 395 DKLLLDPPRSGAIDVLQQLPLKQFKRIVYVSCHPGSLARDAGYLVNEQGFSLLSAGAMDM 454 Query: 350 FPYTRHMECGVLLVRK 365 FP+T H+E + ++ Sbjct: 455 FPHTAHVESIAVFEKR 470 >gi|319776825|ref|YP_004136476.1| tRNA (uracil-5-)-methyltransferase related enzyme [Mycoplasma fermentans M64] gi|318037900|gb|ADV34099.1| tRNA (Uracil-5-)-methyltransferase related enzyme [Mycoplasma fermentans M64] Length = 438 Score = 223 bits (569), Expect = 3e-56, Method: Composition-based stats. Identities = 85/377 (22%), Positives = 151/377 (40%), Gaps = 33/377 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLA---FQVPNLQIFRSEPIHYRMRAEFHIWHDGDDL 58 S L I Y QL K + ++ + F + + +YR + + + Sbjct: 82 STPLAILNYADQLEFKENVVKYLFQRNIHFNETQKILPCEKQWNYRNKITVFVESSKGKI 141 Query: 59 YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAK---LFQIDYLTSQS- 114 ++++ T + + D + + IN L++ + I L QI S+S Sbjct: 142 KFGLYEKNTHKLVEQDSYDLANESINKLLMYLNKNINNYKCFIENGQFLKQIVVRYSESY 201 Query: 115 DQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVD-ERLTV 173 DQ ++ + + E + L L + +++I + K K Y + + + Sbjct: 202 DQMMLAFVQDKPF-----ELSEDLLKDLTSNFKNLKVILKEEKVKKTTYTYYSEAKNIQD 256 Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAATK-GIQGDLLELYCGNGNFSLVLARHFD 232 L + NSF Q N+ ++ ++ ++++ Y G G SL +A Sbjct: 257 KISNLTFNIDYNSFFQVNSYQTNNLYNLLVNNLHLDKTMNVVDAYSGIGTISLKIAEKVK 316 Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292 +V +EI K +V A+ N N++NN + LK ID + Sbjct: 317 KVYGLEIVKEAVINAKQNAKLNNINNTEFYEGDV---------------LKTIDNIKEKI 361 Query: 293 KTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSI--LSTTHTIERLALFD 348 TI +DPPR+G+ + + I YISCNP +LCRD+ + LS + +E L D Sbjct: 362 DTIIIDPPRAGVSKEVLEKILKIEPKQIGYISCNPHTLCRDIDLLTLSKKYKLEFLKPCD 421 Query: 349 QFPYTRHMECGVLLVRK 365 F T H+E +L K Sbjct: 422 MFCQTHHVETVAILKLK 438 >gi|238809600|dbj|BAH69390.1| hypothetical protein [Mycoplasma fermentans PG18] Length = 441 Score = 223 bits (569), Expect = 3e-56, Method: Composition-based stats. Identities = 85/377 (22%), Positives = 151/377 (40%), Gaps = 33/377 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLA---FQVPNLQIFRSEPIHYRMRAEFHIWHDGDDL 58 S L I Y QL K + ++ + F + + +YR + + + Sbjct: 85 STPLAILNYADQLEFKENVVKYLFQRNIHFNETQKILPCEKQWNYRNKITVFVESSKGKI 144 Query: 59 YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAK---LFQIDYLTSQS- 114 ++++ T + + D + + IN L++ + I L QI S+S Sbjct: 145 KFGLYEKNTHKLVEQDSYDLANESINKLLMYLNKNINNYKCFIENGQFLKQIVVRYSESY 204 Query: 115 DQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVD-ERLTV 173 DQ ++ + + E + L L + +++I + K K Y + + + Sbjct: 205 DQMMLAFVQDKPF-----ELSEDLLKDLTSNFKNLKVILKEEKVKKTTYTYYSEAKNIQD 259 Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAATK-GIQGDLLELYCGNGNFSLVLARHFD 232 L + NSF Q N+ ++ ++ ++++ Y G G SL +A Sbjct: 260 KISNLTFNIDYNSFFQVNSYQTNNLYNLLVNNLHLDKTMNVVDAYSGIGTISLKIAEKVK 319 Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292 +V +EI K +V A+ N N++NN + LK ID + Sbjct: 320 KVYGLEIVKEAVINAKQNAKLNNINNTEFYEGDV---------------LKTIDNIKEKI 364 Query: 293 KTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSI--LSTTHTIERLALFD 348 TI +DPPR+G+ + + I YISCNP +LCRD+ + LS + +E L D Sbjct: 365 DTIIIDPPRAGVSKEVLEKILKIEPKQIGYISCNPHTLCRDIDLLTLSKKYKLEFLKPCD 424 Query: 349 QFPYTRHMECGVLLVRK 365 F T H+E +L K Sbjct: 425 MFCQTHHVETVAILKLK 441 >gi|189501475|ref|YP_001957192.1| TrmA family RNA methyltransferase [Candidatus Amoebophilus asiaticus 5a2] gi|189496916|gb|ACE05463.1| RNA methyltransferase, TrmA family [Candidatus Amoebophilus asiaticus 5a2] Length = 468 Score = 223 bits (569), Expect = 3e-56, Method: Composition-based stats. Identities = 70/399 (17%), Positives = 146/399 (36%), Gaps = 51/399 (12%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLA----FQVPNLQIFRSEP-IHYRMRAEFH------ 50 Y QLA K +++ ++ P +I ++P +YR + E+ Sbjct: 83 GCQWQHIDYSAQLAAKEQLVKEKLIRLGRIVNPPVAKILAADPNQYYRNKLEYTFSNKRW 142 Query: 51 -----IWHDGDDLYHIMFDQQT---KERMRIDYFMPGSLLINALMIEMMATIRLEPL--- 99 I D + + + + + I + + NA+ + + R Sbjct: 143 LTQQEIQSDQPLDRYALGFHKPGYFDKVVDIQHCYLQAEPSNAIRLAVGQFAREHGYSFY 202 Query: 100 ----LRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRA 155 + L + T+ + + +V + + + ++ ++ Sbjct: 203 DFRSHQGLLRNLIVRTTSTGEVMVIVQFGENQEGPIVHIMDFIQKKFPTLTSLQYIVNTK 262 Query: 156 ------NKTKICL-DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKG 208 + C + ++ E + L ++ SF Q N+ + + V Sbjct: 263 YNETFYDLEVHCYAGQPFITEVI----DGLQWQIGPKSFFQTNSTQAKVLYQTVADLANL 318 Query: 209 IQGDLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267 +L+ +LY G G + LAR +V+ +E+ + +++ A+ N N ++NV K Sbjct: 319 QGHELVYDLYTGVGTIAHFLARKARQVVGIEMIESAIKDAQINAQLNQLSNVSFWLGDMK 378 Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNP 325 + +++ R I DPPR+G+ V + A I+Y+SCNP Sbjct: 379 DIFN-----------EELLKECGRPDIIVTDPPRAGMHPDVVQQLLQVAPEKIIYVSCNP 427 Query: 326 DSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 + RD+ L + + D FP+T H+E +LV+ Sbjct: 428 ATQARDIHDLQDRYVLTHAQPIDMFPHTSHVENVAVLVK 466 >gi|310766625|gb|ADP11575.1| 23S rRNA 5-methyluridine methyltransferase [Erwinia sp. Ejp617] Length = 438 Score = 223 bits (569), Expect = 3e-56, Method: Composition-based stats. Identities = 85/361 (23%), Positives = 143/361 (39%), Gaps = 30/361 (8%) Query: 13 QLAEKVDRLRQMMLAF---QVPNLQIFRSEPIHYRMRAEFHIWHDG--DDLYHIMFDQQT 67 Q K L ++ V I YR RA + L+ ++ T Sbjct: 100 QQQSKAKALGHLLSKQRGEAVAVDDIITGPIWGYRRRARLGLSFQPATQTLHMGFREKST 159 Query: 68 KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLL 127 E + I + +NAL+ + A + +R +L ++ + + + +V R L Sbjct: 160 SELVNITHCPILKPELNALLQPLHAVLSGLQAVR-RLGHVELVQADNGPLLVL----RHL 214 Query: 128 DDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSF 187 D +L H + L ++ + V TL + F Sbjct: 215 DALTTGDRQKLEQFSHKHHLSLYLAADSDSLEQVSG---VMPHYRSGDLTLTF--SPRDF 269 Query: 188 TQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246 Q N +N M+ LA D +L+LYCG GNF+L + + V+ VE V Sbjct: 270 IQVNDEVNQQMVARALAWLDLQPEDRVLDLYCGMGNFTLPMGKFAKNVVGVEGVAALVAK 329 Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306 A YN N++NNV + + +E + F + +DP R+G Sbjct: 330 AGYNAELNNLNNVTYWQHNLEEDVSR------------QPWAAQGFNKVLLDPARAGAAG 377 Query: 307 ATVGMVQAYP-HILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 + + P ++Y+SCNP +L RD +L++ + +ER+ + D FP+T H+E VL R Sbjct: 378 VMAHITKLAPQRVVYVSCNPTTLARDSEILLTSGYQLERVTMLDMFPHTGHLESMVLFSR 437 Query: 365 K 365 K Sbjct: 438 K 438 >gi|238791235|ref|ZP_04634874.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Yersinia intermedia ATCC 29909] gi|238729368|gb|EEQ20883.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Yersinia intermedia ATCC 29909] Length = 425 Score = 223 bits (569), Expect = 3e-56, Method: Composition-based stats. Identities = 77/365 (21%), Positives = 142/365 (38%), Gaps = 32/365 (8%) Query: 12 QQLAE--KVDRLRQMM--LAFQVPNL-QIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66 QL + K D LR+++ P L + YR RA + + M Q Sbjct: 79 SQLQQDSKADSLRRLLVNATGACPALGPVICGPEYGYRRRARLGLLYQPKQQRLQMGFHQ 138 Query: 67 T--KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 T + + + + + L+ + + +R +L ++ + + + +V Sbjct: 139 TESHDLVSVKHCPVLRPELERLLQPLYQCLSALQAVR-RLGHVELVLADNGPLLVL---- 193 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 R LD L D + + L + + + D L Sbjct: 194 RHLDTLNDVDRAALTDFAQRERVAVYLAADSENLEKLIGEDP-----YYQIDGLRLAFHP 248 Query: 185 NSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 F Q N +N M+ LA +L+L+CG GNF+L LA+ V+ VE Sbjct: 249 RDFIQVNDTVNQQMVAQALAWLDVQPDERVLDLFCGMGNFTLPLAKRAREVVGVEGVAEL 308 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 V +YN +N + NV + + + + + F + +DP R+G Sbjct: 309 VANGQYNAQSNALANVSFFHENLE------------SDISRQPWATQGFDKVLLDPARAG 356 Query: 304 LDDATVGMVQAYP-HILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVL 361 +V+ P ++Y+SCNP +L RD +L+ + + ++ + D FP+T H+E L Sbjct: 357 AAGVMSHIVKLAPKRVVYVSCNPTTLARDSQVLLAAGYRLAQVRMLDMFPHTGHLESMAL 416 Query: 362 LVRKP 366 +++P Sbjct: 417 FMQEP 421 >gi|148654529|ref|YP_001274734.1| RNA methyltransferase [Roseiflexus sp. RS-1] gi|148566639|gb|ABQ88784.1| RNA methyltransferase, TrmA family [Roseiflexus sp. RS-1] Length = 434 Score = 223 bits (569), Expect = 3e-56, Method: Composition-based stats. Identities = 85/364 (23%), Positives = 133/364 (36%), Gaps = 42/364 (11%) Query: 12 QQLAEKVDRLRQMMLAFQVPNLQIFR-----SEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66 Q + L + F ++ S+P YR A H + + Sbjct: 101 AQQRFRRQILADQLAKFAGVAPELVEATAPASKPWAYRSSARLHC----ERRRVGYYAAD 156 Query: 67 TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI---Y 123 T+ +D +N + + + EP L ++ I + Sbjct: 157 TRLITELDRDPLLHPTLNQALAALRDALAGEPDDDQPLDVTLRVSEAHGYCIAAMRGRGE 216 Query: 124 HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQI 183 R L + WR L + + T L L + Sbjct: 217 RRRLAERWRSLCPPLAGVVFTVPPPHTVPPVGVDT------------LVEELDDLTFLLR 264 Query: 184 ENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242 +F Q N +L + A G LL+LYCG G F+L LAR +V+ VE Sbjct: 265 PTTFFQVNVAAATTLLNLIRAGLGDEAGGRLLDLYCGAGTFTLPLARAAIQVVGVEEYPG 324 Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302 +V A + A NHV+NV+ V ++ ++ + F I +DPPR Sbjct: 325 AVADAERSAAVNHVSNVRFVVGRAEAVLSSLEGD---------------FDAIVLDPPRR 369 Query: 303 GLDDATVGMV--QAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360 G + +A I+Y+SC+P +L RDL L ++T+ER D FP T H+E V Sbjct: 370 GCHPQVRQALLERAPRRIVYVSCHPATLARDLHTLIGSYTVERATPVDLFPQTPHVESVV 429 Query: 361 LLVR 364 +LVR Sbjct: 430 VLVR 433 >gi|260771269|ref|ZP_05880196.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Vibrio furnissii CIP 102972] gi|260613866|gb|EEX39058.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Vibrio furnissii CIP 102972] Length = 440 Score = 223 bits (569), Expect = 3e-56, Method: Composition-based stats. Identities = 83/373 (22%), Positives = 148/373 (39%), Gaps = 34/373 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEP-----IHYRMRAEFHIWHDGD 56 L + Q+ K L Q+M F L + S P YR RA + D Sbjct: 90 GCDLQHLAHAAQIEHKQQALSQLMAKFAGQQLAL--SPPVSACDTGYRRRARLSLLWD-K 146 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRA--KLFQIDYLTSQS 114 + F + K+ I ++L +L + A L +L ++ + + + Sbjct: 147 KTQQLQFGFRRKQSKSIVTVTDCAVLEPSLNALLPALHALLSGFAHPEQLGHVELVKADN 206 Query: 115 DQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVA 174 + +V R L + L + + + + V + V Sbjct: 207 TRVLVL----RHLAPLAAKDQSALEAFAAQHDLTLYRMPSSESLEHVCGEGAVYGEVGV- 261 Query: 175 GRTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDR 233 T+ + + ++F Q N +N M+ LA + +L+L+CG GNFSL LA+ + Sbjct: 262 --TIPF--LPSNFIQVNQPVNQAMVAQALAWLAVTPEERVLDLFCGLGNFSLPLAKLAKQ 317 Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293 V+ VE VE A+ N N ++NV + + ++ + + +F Sbjct: 318 VVGVEGIDDMVERAKANATRNDLHNVSFYQANLEQ------------DMTGETWAAEKFD 365 Query: 294 TIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDL-SILSTTHTIERLALFDQFP 351 + +DP R+G + ++Y+SCNP +L RD S+LS + +L + D FP Sbjct: 366 KVLLDPARAGAAGIVDQLAALGAKRVVYVSCNPATLARDSQSLLSQGFQLVKLGMLDMFP 425 Query: 352 YTRHMECGVLLVR 364 +T H+E L V+ Sbjct: 426 HTSHLESMALFVK 438 >gi|292492481|ref|YP_003527920.1| RNA methyltransferase, TrmA family [Nitrosococcus halophilus Nc4] gi|291581076|gb|ADE15533.1| RNA methyltransferase, TrmA family [Nitrosococcus halophilus Nc4] Length = 446 Score = 223 bits (569), Expect = 3e-56, Method: Composition-based stats. Identities = 85/376 (22%), Positives = 131/376 (34%), Gaps = 27/376 (7%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSE----PIHYRMRAEFHI-WHDGD 56 +L QL K + L + F + + + YR +A + + Sbjct: 87 GCSLQHLSPGAQLQLKQETLTEQFRHFGGVEPEQWLTPLTGTDWGYRRKARLGVKFVKKK 146 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116 D + F ++ + L++ + + ++ QI+ + Sbjct: 147 DRVLVGFREKGGRLIAALECCEVLHPSVGLLLPELGELIASLSCYDRIPQIEVAVGDNAT 206 Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGR 176 +V R L +L D A QI L G +T L + E Sbjct: 207 GLV----FRHLVPLTTADMEQLADFGRAHGLQIYLQGGGIETLCLLWPESA-ELSYSQFE 261 Query: 177 TLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVL 235 L + F Q N +N M++ VLA + D +L+L+CG GNF+L LA V+ Sbjct: 262 NLEMVFLPTDFMQVNREVNSKMVQQVLALLELKSHDRVLDLFCGVGNFTLPLASSGAEVV 321 Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295 VE + V A N N + NV E F Sbjct: 322 GVEGSAGLVARATANAKHNQLGNVNFEVADLNEL-----------DWVRHAWAQNGFSKA 370 Query: 296 FVDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPY 352 +DPPRSG A M I+Y+SCNP +L RD L + + + D FP+ Sbjct: 371 VLDPPRSGALTAVQQMSALQVQRIVYVSCNPATLARDAGELVNRQGYHLRYAGVMDMFPH 430 Query: 353 TRHMECGVLLV--RKP 366 T H+E L RK Sbjct: 431 TPHVETIALFEQARKN 446 >gi|310658499|ref|YP_003936220.1| RNA methyltransferase [Clostridium sticklandii DSM 519] gi|308825277|emb|CBH21315.1| Uncharacterized RNA methyltransferase CTC_01941 [Clostridium sticklandii] Length = 449 Score = 223 bits (568), Expect = 3e-56, Method: Composition-based stats. Identities = 76/390 (19%), Positives = 147/390 (37%), Gaps = 46/390 (11%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ---VPNLQIFRSE-PIHYRMRAEFHIW--HDG 55 ++L Y++Q++ K +++ ++ V +L++ +S P Y+ + EF G Sbjct: 79 GCSMLSVPYDEQISIKKNQIIELFNEAGHTEVADLEVLKSPSPYEYKNKMEFTFGDKEKG 138 Query: 56 DDLYHIMFDQQTKERMR-IDYFMPGSLLINALMIE-----------MMATIRLEPLLRAK 103 +L M + + + + M +++ + E LR Sbjct: 139 GELMLGMHAKNSPMSIEYVHSCMIVDEDYRKILVATTEFFRNANLPHYRVLAHEGYLRHL 198 Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRL------RDALHARKYQIQLIGRANK 157 + + T IVT D + +L + LH + K Sbjct: 199 VLRKGKNTGDIQVNIVTTTQLEFDMDTYANMLTKLTLNGEIKGILHTFNDSLSDAVIPEK 258 Query: 158 TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELY 217 + ++ L + SF Q N + V + + +LY Sbjct: 259 INLLYGVTDFEDILLDK----RFNISPFSFFQTNTHGAEVLYSAVKDMIGDKKDIIFDLY 314 Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277 G G + ++ ++++ +EI + +VEAA+ NI N++ N + + Sbjct: 315 SGTGTIGITVSDKANKIVGIEIIEEAVEAAKENIKKNNITNCEFIAGDVA---------- 364 Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSIL 335 ++ S + I +DPPR+G+ +G + ++ ILYISCNP +L DL +L Sbjct: 365 -----TEVSKISENPELILLDPPRAGIHPKAMGDIISFNSKEILYISCNPKALMHDLKVL 419 Query: 336 -STTHTIERLALFDQFPYTRHMECGVLLVR 364 S + I+ + D F T H E V L + Sbjct: 420 KSAGYKIKEVVGVDLFANTPHCETIVKLQK 449 >gi|253689752|ref|YP_003018942.1| RNA methyltransferase, TrmA family [Pectobacterium carotovorum subsp. carotovorum PC1] gi|259495631|sp|C6DDJ9|RUMA_PECCP RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|251756330|gb|ACT14406.1| RNA methyltransferase, TrmA family [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 449 Score = 223 bits (568), Expect = 3e-56, Method: Composition-based stats. Identities = 85/358 (23%), Positives = 150/358 (41%), Gaps = 30/358 (8%) Query: 13 QLAEKVDRLRQMML---AFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQT-- 67 Q + K L ++M ++P+ + P YR RA ++ + +M +Q+ Sbjct: 105 QQSSKTAALMRLMTRETGAELPDASLIAGTPYAYRRRARLALYFQAKEQRLLMGYRQSNS 164 Query: 68 KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLL 127 + + I + AL+ + + ++ +L ++ + +++ +V R L Sbjct: 165 HDLVDIKACPVLRPELEALLQPLRDCLSRLKAVK-RLGHVELVQAENGPLLVL----RHL 219 Query: 128 DDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSF 187 D LRD + + L A+ + CL D + VAG TL + F Sbjct: 220 DPLHPADEQALRDFAEQQGVSVYLAPDAD-SLTCLHGD--EPVYLVAGLTLAF--SPRDF 274 Query: 188 TQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246 Q N +N M+ LA Q +L+L+CG GNF+L LA+ V+ VE VE Sbjct: 275 IQVNDAVNQQMVAQALAWLDVQPQDRILDLFCGMGNFTLPLAQRAASVVGVEGVTALVEK 334 Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306 R N N ++NV + ++ + + F I +DP R+G Sbjct: 335 GRENARRNALSNVTFFHQNLED------------DVTQQPWVAQGFDKILLDPARAGAAG 382 Query: 307 ATVGMVQAYP-HILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVLL 362 + + P ++Y+SCN +L RD +L+ T+ +A+ D FP+T H+E L Sbjct: 383 VMEQITRLAPKRVVYVSCNATTLARDSKVLLAAGFTLVNVAMLDMFPHTGHLESMALF 440 >gi|319789139|ref|YP_004150772.1| RNA methyltransferase, TrmA family [Thermovibrio ammonificans HB-1] gi|317113641|gb|ADU96131.1| RNA methyltransferase, TrmA family [Thermovibrio ammonificans HB-1] Length = 428 Score = 223 bits (568), Expect = 4e-56, Method: Composition-based stats. Identities = 76/376 (20%), Positives = 144/376 (38%), Gaps = 38/376 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQV---PNL-QIFRSE-PIHYRMRAEFHIWHDGD 56 Y +Q+ K + + + PN+ ++ S P +YR R + + Sbjct: 76 GCDWQHISYRKQVEFKRAVVEENLQKIGKIKRPNIDEVIPSPSPWNYRNRVQVKV----K 131 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116 F + + + ++ + + + L P L + + +S D+ Sbjct: 132 GGKVGFFAKNSHSVVEVERCPLLKEDLEGIFPRLKE---LLPKLPTEPAEFHLYSSSKDE 188 Query: 117 AIVTLIYHRLLDDAWRECAIRLRDA-LHARKYQIQLIGRANKTKIC--LDRDYVDERLTV 173 ++ +++ R E ++ + I G + + RD+ E + Sbjct: 189 VLLKIVFPRQFKRVELELEELKELLGVNLVGFGIYRQGSSGYPERIKFFGRDFTYELVG- 247 Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFSLVLARHFD 232 +R +SF Q N ++++ V Q L +LYCG G ++ +AR+ Sbjct: 248 ---KFKFRVSADSFFQVNRFQVGNLIDRVARGAMEHQYMLAGDLYCGVGTLTIPVARYVH 304 Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292 R VE +V A YN N + NV ++E + +R Sbjct: 305 RAFGVEANFSAVADALYNKDINGLRNVNFYCRETEEALKIIRE--------------NGP 350 Query: 293 KTIFVDPPRSGLDDATVGMVQAYP---HILYISCNPDSLCRDLSILST-THTIERLALFD 348 + VDPPRSGL++ + + P ++Y+SCNP +L RD+++ +ER + D Sbjct: 351 DLVVVDPPRSGLNEKIIRTIATLPRLRRVIYVSCNPATLARDVALFYKYGVHMERAKVLD 410 Query: 349 QFPYTRHMECGVLLVR 364 FP T H+E L + Sbjct: 411 MFPQTYHVETICFLRK 426 >gi|170730638|ref|YP_001776071.1| 23S rRNA 5-methyluridine methyltransferase [Xylella fastidiosa M12] gi|167965431|gb|ACA12441.1| RNA methyltransferase [Xylella fastidiosa M12] Length = 443 Score = 223 bits (568), Expect = 4e-56, Method: Composition-based stats. Identities = 80/373 (21%), Positives = 136/373 (36%), Gaps = 27/373 (7%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRS----EPIHYRMRAEFHI-WHDGD 56 L + Q+ K L + + + + S E YR + F + W + Sbjct: 87 GCVLQHLAEDAQVVSKQRVLLESLERIGRVSPERVLSALAAESWGYRRKGRFSVRWVEKK 146 Query: 57 DLYHIMFDQQTKERM-RIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115 + F ++ + + + I ++AT+ R + QI+++ + Sbjct: 147 GRTLVGFRERDPRFVADVSVCHTVVPHVGE-KIALLATLLDSLDGRRDVPQIEFIAGDA- 204 Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175 V + R L + L + I L ++ L D V + Sbjct: 205 ---VVALTVRHLQPLSEADRLALIEFGKEHGIAIFLQSGGVESVRLLWPDEVLLAFRLKP 261 Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRV 234 + + F Q N G+N M+ L G +L+L+CG GNF+L LAR V Sbjct: 262 WDVEFVFRPLDFIQINGGLNEKMIAHALDLLGAGFGERVLDLFCGLGNFTLPLARTVGEV 321 Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294 + VE VE AR N N + N + +D F Sbjct: 322 VGVEGDIGLVERARENARRNGLGNAEFFVADLT------------RDQRDAPWMRQGFDK 369 Query: 295 IFVDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDLSIL--STTHTIERLALFDQFP 351 + +DPPRSG + + ++ + I+Y+SC+P SL RD L + + D FP Sbjct: 370 LLLDPPRSGAIEVLKQLPLKMFERIVYVSCHPGSLARDADFLVNEQGFVLRAVGAMDMFP 429 Query: 352 YTRHMECGVLLVR 364 +T H+E + R Sbjct: 430 HTAHVESIAVFDR 442 >gi|242238299|ref|YP_002986480.1| 23S rRNA 5-methyluridine methyltransferase [Dickeya dadantii Ech703] gi|242130356|gb|ACS84658.1| RNA methyltransferase, TrmA family [Dickeya dadantii Ech703] Length = 442 Score = 223 bits (568), Expect = 4e-56, Method: Composition-based stats. Identities = 80/358 (22%), Positives = 131/358 (36%), Gaps = 30/358 (8%) Query: 13 QLAEKVDRLRQMML---AFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF--DQQT 67 Q K LR +M ++P + YR RA + + +M + + Sbjct: 100 QQRSKAAALRHLMRRETGVEMPEPVVIDGPDYGYRRRARLALLYQPKTRQLLMGYRREGS 159 Query: 68 KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLL 127 + I + AL+ + + + +L ++ + ++ +V R L Sbjct: 160 HDLADIHVCPVLHPALEALLTPLRDCLAGLKAAK-RLGHVELVMAEQGPLVVL----RHL 214 Query: 128 DDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSF 187 D L D + L A + L F Sbjct: 215 DVLQEADRQALNDFGARVGCALFLAPEAGALACLRGAAP-----SYRIDGLSLAFSPRDF 269 Query: 188 TQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246 Q N +N M+ L + +L+L+CG GNF+L LAR V+ VE VE Sbjct: 270 IQVNDEVNQRMVAQALEWLDPQPHERVLDLFCGMGNFTLPLARRAASVVGVEGVAALVEK 329 Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306 R N N NV + +E + + F I +DP R+G Sbjct: 330 GRENAERNAFGNVTFFHQNLEE------------DVTRQPWAAQGFDKILLDPARAGAPG 377 Query: 307 ATVGMVQAYP-HILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVLL 362 +V+ P ++YISCNP +L RD +L+ + +E+LA+ D FP+T H+E L Sbjct: 378 VMSQIVKLTPGRVVYISCNPTTLARDSRVLLAAGYRLEKLAMLDMFPHTGHLESMALF 435 >gi|283768823|ref|ZP_06341734.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bulleidia extructa W1219] gi|283104609|gb|EFC05982.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bulleidia extructa W1219] Length = 436 Score = 223 bits (568), Expect = 4e-56, Method: Composition-based stats. Identities = 76/373 (20%), Positives = 155/373 (41%), Gaps = 35/373 (9%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPNL----QIFRSE-PIHYRMRAEFHIWHDGDDLYHIMF 63 +YE+QL K+D L + + + +I SE YR + + I L +F Sbjct: 79 EYEKQLTFKLDLLTEALWKYAKVKRHWVRKINPSENEFSYRNQCKLPIQERQGKLVCGLF 138 Query: 64 DQQTKERMRIDYFMPGSLLINALMIEMMATIRL----------EPLLRAKLFQIDYLTSQ 113 + + + +F+ + + E++A + + LR + + + SQ Sbjct: 139 SPNSNQFQVVHHFLTHDPEVERIRKELLAILNQHHFPAYSHKTKQGLRYIVIRCIHGISQ 198 Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTV 173 + ++ L D +++ + L +TK+ + + L + Sbjct: 199 ATLITGKDTLNKCLIDDFKKIPHLHSLHQSWNTSKQSLQFFGERTKLLFGKKH----LLI 254 Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDR 233 ++ +F Q N + + ++ L+E YCG G SL+ + ++ Sbjct: 255 PFSSIYLHVSPEAFFQLNTKQAEALYHYAVSKVDPC-HILVEAYCGIGVMSLLASSKAEQ 313 Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293 V +E+ +++ A+ N NH++N + + + +++ + Sbjct: 314 VYGIELNPHAIQDAKRNAELNHLDNCHFECADAADGLYKIAKKQ-------------KID 360 Query: 294 TIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFP 351 T+ +DPPRSGLD+A + + I+YISCNP +L +++++L + I + FD FP Sbjct: 361 TLLIDPPRSGLDEAMLEAILKSQPDRIIYISCNPATLAKNIAVLKWKYQILTIQAFDLFP 420 Query: 352 YTRHMECGVLLVR 364 T H+EC LL + Sbjct: 421 QTPHVECLCLLSK 433 >gi|47097757|ref|ZP_00235248.1| RNA methyltransferase, TrmA family [Listeria monocytogenes str. 1/2a F6854] gi|47013868|gb|EAL04910.1| RNA methyltransferase, TrmA family [Listeria monocytogenes str. 1/2a F6854] Length = 351 Score = 223 bits (568), Expect = 4e-56, Method: Composition-based stats. Identities = 70/360 (19%), Positives = 129/360 (35%), Gaps = 40/360 (11%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54 L Y QL K D + Q + + I +P YR +++F Sbjct: 7 GCQLQHVAYSAQLELKRDIVIQSIEKHTKIDPTKLKIRPTIGMEDPWRYRNKSQFQTRMV 66 Query: 55 GDDLYH-IMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRA 102 G +F + + + I+ + L+ + + ++R Sbjct: 67 GSGQVETGLFGANSHQLVPIEDCIVQQPVTIKVTNFVRDLLEKYGVPIYDEKAGSGIVRT 126 Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162 + + T ++ +T + L RE + AL +Q + +A + I Sbjct: 127 IVVRTGVKTGETQLVFITN--SKKL-PKKREMLAEIEAALPEVTSIMQNVNQAKSSLIFG 183 Query: 163 DRDYV---DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYC 218 D ++ E + L + +F Q N + + V A + L++ YC Sbjct: 184 DETFLLAGKESIEEKLMELEFDLSARAFFQLNPFQTERLYQEVEKALVLTGSETLVDAYC 243 Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278 G G A V ++I S+E A+ N N + NV +++ +E Sbjct: 244 GVGTIGQAFAGKVKEVRGMDIIPESIEDAKRNAEKNGIENVYYEVGKAEDVLPKWVKE-- 301 Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILS 336 +R + VDPPRSG D + + ++Y+SCNP +L RDL++L+ Sbjct: 302 ----------GFRPDAVIVDPPRSGCDQGLIKSLLDVEAKQLVYVSCNPSTLARDLALLA 351 >gi|260775202|ref|ZP_05884100.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Vibrio coralliilyticus ATCC BAA-450] gi|260608903|gb|EEX35065.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Vibrio coralliilyticus ATCC BAA-450] Length = 439 Score = 223 bits (568), Expect = 4e-56, Method: Composition-based stats. Identities = 80/373 (21%), Positives = 151/373 (40%), Gaps = 34/373 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAF-----QVPNLQIFRSEPIHYRMRAEFHIWHDGD 56 + E Q K L Q+M F + + SE YR RA + D Sbjct: 90 GCNMQHLSSEHQQMHKQQTLSQLMSKFAGQSLNLEAPIVGESE--GYRRRARISVMVDKK 147 Query: 57 --DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQS 114 L +Q+K+ + + + + ++ L+ ++ A + + + ++ + + + Sbjct: 148 TRQLKFGFRKKQSKDIVTLTHCPVLAPELDELLPDLYALLSRF-SQQENIGHVELVKADN 206 Query: 115 DQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVA 174 + +V R L + L + + + L+ + + V + V Sbjct: 207 TRILVL----RHLKPLNNKDHDALLEFAKLNQITLYLMPNNEQLMLETGEAGVYQETGVN 262 Query: 175 GRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDR 233 + + N+F Q N +N M+ L + D +L+L+CG GNFSL +A+ Sbjct: 263 ---IPFE--PNNFIQVNQQVNAQMVTQALDWLALSEQDRVLDLFCGLGNFSLPIAKQVKS 317 Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293 V+ VE V A +N N ++N + + + ++ RE +F Sbjct: 318 VIGVEGVDEMVSKATHNAQVNQIDNAQFYQANLEQDMSGQLWARE------------KFD 365 Query: 294 TIFVDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDL-SILSTTHTIERLALFDQFP 351 I +DP R+G + ++Y+SCNP +L RD S+LS +++L + D FP Sbjct: 366 KILLDPARAGASGIVEQVSALGATRVVYVSCNPATLARDSQSLLSQGFELKKLGMLDMFP 425 Query: 352 YTRHMECGVLLVR 364 +T H+E L V+ Sbjct: 426 HTSHLESMALFVK 438 >gi|269928597|ref|YP_003320918.1| RNA methyltransferase, TrmA family [Sphaerobacter thermophilus DSM 20745] gi|269787954|gb|ACZ40096.1| RNA methyltransferase, TrmA family [Sphaerobacter thermophilus DSM 20745] Length = 400 Score = 223 bits (568), Expect = 4e-56, Method: Composition-based stats. Identities = 76/364 (20%), Positives = 136/364 (37%), Gaps = 67/364 (18%) Query: 10 YEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 YE+QL K +R+ + + + S+P YR A F GD + Sbjct: 94 YEKQLEFKQHIVREQLRRIGKFDDPPVSPTVPCSKPYGYRNNARFSTSRQGDLGFITRPG 153 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 + + RID + IN + ++ + + Q V + Y Sbjct: 154 TGYRFQ-RIDRCLIMVPQINEALAKLQG-------------------TGAGQHQVVIRYG 193 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + + +R R ++ + Y E L +R Sbjct: 194 ENTGEMLIQPDLRHRQP-----------------EVESGQKYFHEALL----GRRFRISG 232 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 SF Q N ++E V +++ + Y G G F+++LA RV+A+E + + Sbjct: 233 PSFFQTNTEQAERLVELVRERLALTGNEVVVDAYAGVGTFAILLASEARRVIAIEESPSA 292 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 V A+ N+ ++NV+ V + + + I +DPPR+G Sbjct: 293 VADAQPNLE--GISNVEYVTGKVERVLPRL---------------EIQADAIILDPPRAG 335 Query: 304 LDDATVGM-VQAYP-HILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGV 360 + ++ +P ++Y+SC+P +L RDL IL + + + D FP T H+EC Sbjct: 336 CHPRALEAVLEMHPQRLVYVSCDPSTLARDLRILVDGGYRLLDVTPVDMFPQTYHIECVA 395 Query: 361 LLVR 364 L R Sbjct: 396 ALER 399 >gi|319787470|ref|YP_004146945.1| RNA methyltransferase, TrmA family [Pseudoxanthomonas suwonensis 11-1] gi|317465982|gb|ADV27714.1| RNA methyltransferase, TrmA family [Pseudoxanthomonas suwonensis 11-1] Length = 449 Score = 222 bits (567), Expect = 5e-56, Method: Composition-based stats. Identities = 82/375 (21%), Positives = 134/375 (35%), Gaps = 31/375 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSE----PIHYRMRAEFHIWH--DG 55 L +Q+ K L + + + YR + F + Sbjct: 94 GCVLQHLDEARQIGAKQQVLLENLERIGKVHPGEVLPPLTAGSWGYRRKGRFSVRRVNKK 153 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115 D +Q + + I ++ + A + R + QI+++ D Sbjct: 154 DKTLVGFREQDPRFVADLQECHTTIPEIGMKVVALSALVDGLQA-RESIPQIEFIAG--D 210 Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVD--ERLTV 173 AI + H L L + I L + + L+ + RL Sbjct: 211 DAIALTVRH--LVPLPEADRAALAAFGREHGFSIFLQPKGLDSVHPLEEPAPELSFRLPQ 268 Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFD 232 L ++ F Q NA +N M+ L +L+L+CG GNF+L LAR Sbjct: 269 WNVELAFQ--PLDFIQVNARLNEKMIARALEMLDTSPDHRVLDLFCGLGNFTLPLARQVR 326 Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292 V+ VE V AR N N + N + + + TQ R + F Sbjct: 327 EVVGVEGDPGLVARARANAERNGLANARFF---AADLTQDQRGTPWMRQ---------GF 374 Query: 293 KTIFVDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDLSIL--STTHTIERLALFDQ 349 + +DPPRSG ++ + +Q I+Y+SC+P SL RD L + + + D Sbjct: 375 DRLLLDPPRSGAEEVLKQLPLQDIDRIVYVSCHPGSLARDAGFLVNERGYRLVSAGVMDM 434 Query: 350 FPYTRHMECGVLLVR 364 FP+T H+E L R Sbjct: 435 FPHTAHVESIALFER 449 >gi|326335854|ref|ZP_08202033.1| 23S rRNA (uracil-5-)-methyltransferase [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325691998|gb|EGD33958.1| 23S rRNA (uracil-5-)-methyltransferase [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 469 Score = 222 bits (567), Expect = 5e-56, Method: Composition-based stats. Identities = 67/402 (16%), Positives = 128/402 (31%), Gaps = 53/402 (13%) Query: 2 SGTLLID-QYEQQLAEKVDRLRQMMLAFQVPNLQ-----IFRSEPIHYRMRAEFHIWHD- 54 G D Y+ QL K + + + + + YR + EF Sbjct: 83 GGCQWQDMNYQSQLFYKQKEVVNNLKRLGGIVPEEILPILGSEKEYFYRNKIEFSFSESR 142 Query: 55 ----------------GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEP 98 +HI + + I NA+ + Sbjct: 143 WLTSEEIESKEEINNRNGLGFHIAGAWD--KVLDIHKCYLQEDPSNAIRNAIKEYANTHG 200 Query: 99 LL-------RAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQL 151 L + + + ++ + + + +E L +Q Sbjct: 201 YTFYNPCSHSGWLRTMMIRITSIGEIMLVIQFLEERKEERKELLDYLLVQFPQI-TSLQY 259 Query: 152 IGRANKTKICLDRD----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATK 207 I + D++ + E + L ++ SF Q N+ + + L V Sbjct: 260 IINSKPNDTIYDQEVICYHGREFIHEEMEDLRFKINAKSFFQTNS-LQAYQLYKVTRDFA 318 Query: 208 GIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265 + G + +LY G G + +A+ +V+ VE ++ A+ N N + NV Sbjct: 319 ALTGKELVYDLYTGTGTIAQFIAKGAKKVIGVESVPEAIADAKENAHTNQIYNVDFFVGD 378 Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISC 323 K ++ I DPPR G+ + + A ++Y+SC Sbjct: 379 MKNIFN-----------EEFITKHGTPDVIITDPPRDGMHKDVIAQILRIAPKRVVYVSC 427 Query: 324 NPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 N + RDL+++ + + ++ D FP T H+E LL K Sbjct: 428 NSATQARDLALMDPMYKVVKIRPVDMFPQTYHIENVALLELK 469 >gi|119774169|ref|YP_926909.1| 23S rRNA 5-methyluridine methyltransferase [Shewanella amazonensis SB2B] gi|143581857|sp|A1S4D3|RUMA_SHEAM RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|119766669|gb|ABL99239.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Shewanella amazonensis SB2B] Length = 443 Score = 222 bits (567), Expect = 5e-56, Method: Composition-based stats. Identities = 80/371 (21%), Positives = 140/371 (37%), Gaps = 30/371 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFH--IWHDG 55 L +QL K L ++ + + + HYR RA + + Sbjct: 91 GCDLQHLSLPRQLEYKRQALGDIVSRSAAQTVTVNTDEVSGDSWHYRRRARLATLLDKET 150 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115 + L ++ +K + ID + ++ L I AT+ + +L ++ + + Sbjct: 151 NQLALGFREEGSKSVVGIDSCAVLARPLSEL-ISPFATLLNRLKGKQRLGHLELTQAANG 209 Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175 V R+ + L R+ + L G + + E Sbjct: 210 LFAVL----RVTAPLAQSDKKLLSAFADERQIALLLQGNEGELEFL---SSGHELPYYQL 262 Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRV 234 L +F Q N +N M+ + G+ +L+L+CG GNFSL LA+ V Sbjct: 263 DGLKLAFAPGNFIQVNGEVNQAMVAQAMNWLDVHAGERVLDLFCGVGNFSLPLAKQGAEV 322 Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294 + VE V A+ N A N ++N+ ++ + E ++ Sbjct: 323 VGVEGVPEMVAQAKQNAAINGLDNLSFYCAD---LSEDLAAEPWLGKI----------DK 369 Query: 295 IFVDPPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPY 352 + +DP R+G ++ + + P +LY+SCNP SL RD +L + + RL L D FP Sbjct: 370 LLLDPARAGAYESLKWLKKMKPAKVLYVSCNPASLARDSVLLFEAGYQLTRLGLVDMFPQ 429 Query: 353 TRHMECGVLLV 363 T H E L Sbjct: 430 THHSEGMALFE 440 >gi|254428372|ref|ZP_05042079.1| 23S rRNA (uracil-5-)-methyltransferase [Alcanivorax sp. DG881] gi|196194541|gb|EDX89500.1| 23S rRNA (uracil-5-)-methyltransferase [Alcanivorax sp. DG881] Length = 445 Score = 222 bits (567), Expect = 5e-56, Method: Composition-based stats. Identities = 81/380 (21%), Positives = 142/380 (37%), Gaps = 40/380 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWHDGDD 57 +L Q+A K LR+ + F + YR +A + + Sbjct: 85 GCSLQHMSPAVQVARKEAVLREQLQHFGGLEPEEWLPPLTGPVTGYRSKARLGVKYVEAK 144 Query: 58 LYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLL--RAKLFQIDYLTSQSD 115 ++ + K I +LI + + L L R+++ QI+ D Sbjct: 145 GETLV-GFREKRNSFIAQLRTCEVLIPDVGHRLSELRTLMHSLESRSRIPQIELAAGDDD 203 Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175 A++ R LD L + L T + + ++RL + Sbjct: 204 VALII----RHLDPLPEADQQALVGFCQNLGWHCYLQPGNESTVHRVWPEDGEQRLYYSH 259 Query: 176 ----RTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARH 230 L + FTQ NA IN M+ L + +L+L+CG GNF++ A+ Sbjct: 260 PSAGVELAFH--PTDFTQVNAEINRKMVPLALDLLDISPEHTVLDLFCGLGNFTIPAAKR 317 Query: 231 FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY 290 +V+ VE+++ VE N N + N++ + R+ Sbjct: 318 AGKVVGVEVSQAMVERGYENARRNGLENLEFHAWDLSQDVSGQAWARQA----------- 366 Query: 291 RFKTIFVDPPRSGLDDATVGMVQAYP-----HILYISCNPDSLCRDLSILST-THTIERL 344 + I +DPPR+G + MV+ P I+Y+SCNP +L RD L + ++ Sbjct: 367 -YDRILIDPPRTG----ALEMVKLMPRLGASRIVYVSCNPATLARDAGELMALGYRLKAA 421 Query: 345 ALFDQFPYTRHMECGVLLVR 364 + D FP+T H+E + + Sbjct: 422 GVMDMFPHTTHVESIAVFEK 441 >gi|71898365|ref|ZP_00680538.1| tRNA (uracil-5-)-methyltransferase/TrmA [Xylella fastidiosa Ann-1] gi|182681995|ref|YP_001830155.1| 23S rRNA 5-methyluridine methyltransferase [Xylella fastidiosa M23] gi|71731888|gb|EAO33946.1| tRNA (uracil-5-)-methyltransferase/TrmA [Xylella fastidiosa Ann-1] gi|182632105|gb|ACB92881.1| RNA methyltransferase, TrmA family [Xylella fastidiosa M23] Length = 468 Score = 222 bits (567), Expect = 5e-56, Method: Composition-based stats. Identities = 77/373 (20%), Positives = 135/373 (36%), Gaps = 27/373 (7%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWHDGDD 57 L + Q+ K L + + + + +E YR + F + Sbjct: 112 GCVLQHLAEDAQVVSKQRVLLESLERIGCVSPERVLPALAAESWGYRRKGRFSVRWVEKK 171 Query: 58 LYHIMFDQQTKERMRIDYFMPGSLLINAL--MIEMMATIRLEPLLRAKLFQIDYLTSQSD 115 ++ + + + ++ + I ++AT+ R + QI+++ + Sbjct: 172 GRTLV-GFREHDPRFVADVSVCHTVVPQVGEKIALLATLLDSLDGRCDVPQIEFIAGDA- 229 Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175 V + R L + L + I L ++ L D V + Sbjct: 230 ---VVALTVRHLQPLSEADRLALIEFGKEHGIAIFLQSGGVESVRLLWPDEVLLAFRLKP 286 Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRV 234 + + F Q N G+N M+ L G +L+L+CG GNF+L LAR V Sbjct: 287 WDVEFVFRPLDFIQINGGLNEKMIAHALDLLGAGFGERVLDLFCGLGNFTLPLARTVGEV 346 Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294 + VE VE AR N N + N + +D F Sbjct: 347 VGVEGDIGLVERARENARRNGLGNAEFFVADLT------------RDQRDAPWMRQGFDK 394 Query: 295 IFVDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDLSIL--STTHTIERLALFDQFP 351 + +DPPRSG + + ++ + I+Y+SC+P SL RD L + + D FP Sbjct: 395 LLLDPPRSGAIEVLKQLPLKMFERIVYVSCHPGSLARDADFLVNEQGFVLRAVGAMDMFP 454 Query: 352 YTRHMECGVLLVR 364 +T H+E + R Sbjct: 455 HTAHVESIAVFDR 467 >gi|94967169|ref|YP_589217.1| (Uracil-5)-methyltransferase [Candidatus Koribacter versatilis Ellin345] gi|94549219|gb|ABF39143.1| 23S rRNA m(5)U-1939 methyltransferase [Candidatus Koribacter versatilis Ellin345] Length = 441 Score = 222 bits (567), Expect = 5e-56, Method: Composition-based stats. Identities = 93/384 (24%), Positives = 158/384 (41%), Gaps = 42/384 (10%) Query: 2 SGTLL-IDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWHDGD 56 G QY +Q+ K L + + L+ +EP+ YR R + H Sbjct: 79 GGCQYQHLQYAEQVKAKAQILEETLSRTAKLKLEQPIQTHAAEPLGYRNRTRMRVSHVPQ 138 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116 + + + ++ S LIN ++ + A R E + R ++ ++ + + D Sbjct: 139 -FAIGYYRFGSHSLLPVEQCPISSPLINRVLQGLWAAGREERIAR-EVREVQFFANHDDS 196 Query: 117 AIVTL--IYHRLLDDAWRECAIRLRDALHAR----KYQIQLIGRANKTKICLDRD----- 165 ++ I H DA + LR + ++ + + L R Sbjct: 197 RLLLELYIDHHAEPDALQPMIETLRGKMPEIAGVAVFRGAPADDSEDQRAPLTRAKASPG 256 Query: 166 --YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNF 223 + + L + Y+ +F Q N + M E V G L+LY G G F Sbjct: 257 VFFGERSLRYKTKRHEYQVSAGAFFQTNRFLLDEMAETVTRGHSGKLA--LDLYSGGGFF 314 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 SL LA F++V+AVE + S + N + NVK VR ++EF + R+ Sbjct: 315 SLPLADQFEKVIAVEASGHSQADLKTNA----LRNVKAVRSGTEEFLRGEGRQL------ 364 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STTHT 340 R + VDPPR+GL + T ++ + + Y+SC+P +L RD+ +L + Sbjct: 365 -------RPDLVVVDPPRAGLGEKTSHLIGRMSVGRVTYVSCDPATLSRDMKVLVESGFR 417 Query: 341 IERLALFDQFPYTRHMECGVLLVR 364 +E + LFD FP T H+E + LVR Sbjct: 418 VEEVHLFDLFPQTYHLESVLHLVR 441 >gi|238786792|ref|ZP_04630593.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Yersinia frederiksenii ATCC 33641] gi|238725160|gb|EEQ16799.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Yersinia frederiksenii ATCC 33641] Length = 425 Score = 222 bits (567), Expect = 5e-56, Method: Composition-based stats. Identities = 72/365 (19%), Positives = 140/365 (38%), Gaps = 32/365 (8%) Query: 12 QQLAE--KVDRLRQMM---LAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66 QL + K D L+++M + + YR RA + + M +Q Sbjct: 79 SQLQQQSKADSLQRLMVREMGVCPELDPVICGPEYGYRRRARLGLLYQPKRQQLQMGFRQ 138 Query: 67 T--KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 T + + + Y + L+ + + +R +L + + + + +V Sbjct: 139 TESHDLVCVKYCPVLRPELERLLSPLYQCLSALQAVR-RLGHAELVLADNGPLLVL---- 193 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 R LD + L + + + L ++K + D L Sbjct: 194 RHLDTLKEVDRVALTEFAKREQVAVYLAADSDKLEKLFGEDP-----YYQIEGLRLAFHP 248 Query: 185 NSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 F Q N +N M+ + +L+L+CG GNF+L LA+ V+ VE Sbjct: 249 RDFIQVNDAVNQQMVAQAIVWLDVQPDERVLDLFCGMGNFTLPLAKLAREVVGVEGVAAL 308 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 V +YN N + N + + + + + F + +DP R+G Sbjct: 309 VANGQYNAFNNALPNASFFHENLE------------SDISCQPWATQGFDKVLLDPARAG 356 Query: 304 LDDATVGMVQAYP-HILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVL 361 +++ P ++Y+SCNP +L RD +L+ + + ++ + D FP+T H+E L Sbjct: 357 AAGVMSHIIKLAPKRVVYVSCNPTTLARDSQVLLAAGYRLAQVRMLDMFPHTGHLESMAL 416 Query: 362 LVRKP 366 +++P Sbjct: 417 FIQEP 421 >gi|119944302|ref|YP_941982.1| RNA methyltransferase, TrmA family protein [Psychromonas ingrahamii 37] gi|143581743|sp|A1SSB8|RUMA_PSYIN RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|119862906|gb|ABM02383.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Psychromonas ingrahamii 37] Length = 444 Score = 222 bits (567), Expect = 5e-56, Method: Composition-based stats. Identities = 86/371 (23%), Positives = 142/371 (38%), Gaps = 27/371 (7%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSE----PIHYRMRAEFHIWHDGDD 57 L Q+ K D L + F Q YR A F + D + Sbjct: 91 GCDLQHLNQAAQIQIKSDGLLSLFQRFAKKVPQQLEKPIIDKAWEYRRTARFGLQFDKKN 150 Query: 58 LYHIMF--DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115 M Q+ E + + L+ + + +A L ++ L +D Sbjct: 151 KQLKMGLRRAQSNELIDQKVCPVLLPELECLIPPLKILLNSLQ-CKAHLGHVELL--YAD 207 Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175 Q V L+ H + I AL + Q +N++ + RL Sbjct: 208 QGAVVLLRHMKTLTSPDLQLITAFSALQKVNFFGQ--ASSNQSVCLAGEANLSYRLPEWD 265 Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRV 234 +L + F Q N+ IN M+ + + D +L+L+CG GNF+L +AR + V Sbjct: 266 CSLSF--TPTDFLQVNSDINKKMVSQAMQWLALEKNDSVLDLFCGLGNFTLPIARQVESV 323 Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294 + +E + V+ A N N++ N + + L + + + F Sbjct: 324 VGIEGVQQMVDRATANAQLNNLQNARFYQAD-----------LSGENLIEQEWANQNFNK 372 Query: 295 IFVDPPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPY 352 + +DP R+G D + Q P HILY+SC+P +L RD +L + +++L L D FP Sbjct: 373 VLLDPARAGALDCLAFIAQKKPSHILYVSCDPLTLARDSQVLLDKGYKLDKLGLLDMFPQ 432 Query: 353 TRHMECGVLLV 363 T HME L Sbjct: 433 TAHMESMALFT 443 >gi|197284125|ref|YP_002149997.1| 23S rRNA 5-methyluridine methyltransferase [Proteus mirabilis HI4320] gi|227358009|ref|ZP_03842351.1| 23S rRNA (uracil-5-)-methyltransferase [Proteus mirabilis ATCC 29906] gi|226725384|sp|B4EUF2|RUMA_PROMH RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|194681612|emb|CAR40617.1| 23S rRNA (uracil-5-)-methyltransferase [Proteus mirabilis HI4320] gi|227161744|gb|EEI46776.1| 23S rRNA (uracil-5-)-methyltransferase [Proteus mirabilis ATCC 29906] Length = 441 Score = 222 bits (567), Expect = 6e-56, Method: Composition-based stats. Identities = 79/360 (21%), Positives = 144/360 (40%), Gaps = 27/360 (7%) Query: 13 QLAEKVDRLRQMMLAFQVPNL---QIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ-TK 68 Q K + L ++ + + YR RA + + + F Q + Sbjct: 102 QRTTKAEVLSHLIKRETNVVISAQPVIAGAEYGYRRRARLGLRYHPKKGLVMGFRQALSN 161 Query: 69 ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLD 128 + + + +N L++ + ++ ++R L ++ + + + +V L + L Sbjct: 162 DLVMVTQCPVLKPQLNVLLLPLWQCLKQLSVVRD-LGHVELVLADNG-PLVILRHLSPLS 219 Query: 129 DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFT 188 + ++ L D H + I L G + +++ L F Sbjct: 220 EGDKQL---LDDFSHHAQVMIYLAGDNGE---IAQLTTIEKEPFYQIEGLKLHFAPTDFI 273 Query: 189 QPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA 247 Q N IN M+ +A D +L+L+CG GNF+L +A+ D+V+ VE V A Sbjct: 274 QVNDEINHKMVAQAIAWLDLSPNDRVLDLFCGMGNFTLPMAKRVDKVVGVEGVPALVAMA 333 Query: 248 RYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307 + N N ++NV+ AM +E F + +DP R+G Sbjct: 334 KKNAELNQLDNVQFWHADLSADFSAMPWAQE------------GFNKVLLDPARAGAAQV 381 Query: 308 TVGMVQAY-PHILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 +V I+Y+SCNP +L RD +L + + + +L + D FP T H+E L +RK Sbjct: 382 MSHIVTLSAEKIVYVSCNPTTLARDSKILLDSGYQLTQLRMLDMFPQTGHLESMALFIRK 441 >gi|213962114|ref|ZP_03390378.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Capnocytophaga sputigena Capno] gi|213955120|gb|EEB66438.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Capnocytophaga sputigena Capno] Length = 470 Score = 222 bits (567), Expect = 6e-56, Method: Composition-based stats. Identities = 79/403 (19%), Positives = 141/403 (34%), Gaps = 55/403 (13%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQ---MMLAFQVPN--LQIFRSEPIHYRMRAEFHI----W 52 YE QL K + + +P + YR + EF W Sbjct: 83 GCKWQDMNYESQLFYKQKEVENNLVRLGKITIPELMPIVASENIYFYRNKMEFSFSDMRW 142 Query: 53 HDGDDLYHIMFDQQTK-----------ERMRIDYFMPGSLLINALMIEM----------- 90 +++ + +Q + + ID NA+ +E+ Sbjct: 143 LTPEEIQNADTIEQRNGLGFHIAGAWDKILDIDKCYLQEDPSNAIRLEIKRFALENNIAF 202 Query: 91 MATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL---LDDAWRECAIRLRDALHARKY 147 + + +LR+ + +I T + I + L + + ++ + Sbjct: 203 YSPRQQTGVLRSMMIRISS-TGEIMLVIQFFSDSKKCNLLLEHIAQTFPQITSLQYCINS 261 Query: 148 QIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATK 207 + KI D + E + L ++ SF Q N+ H L + Sbjct: 262 KGNDAIYDQDLKIYKGTDCIYEEM----EGLRFKINAKSFYQTNSKQA-HKLYQITRDFA 316 Query: 208 GIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265 ++GD + +LY G G + +AR +V+ VE ++ A+ N AN + NV Sbjct: 317 DLKGDELVYDLYTGTGTIAQFVARKAKKVVGVEAVPEAIADAKANAKANGIENVSFYVGD 376 Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISC 323 K + I DPPR G+ V + A P I+Y+SC Sbjct: 377 MKNVFNDT-----------FIKANGTPDVIITDPPRDGMHKDVVEQILQIAPPKIVYVSC 425 Query: 324 NPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRKP 366 N + RDL++L + + ++ D FP T H+E VLL ++ Sbjct: 426 NSATQARDLALLDEMYKVTKVQPVDMFPQTYHVENVVLLEKRN 468 >gi|238923775|ref|YP_002937291.1| tRNA (uracil-5-) -methyltransferase [Eubacterium rectale ATCC 33656] gi|238875450|gb|ACR75157.1| tRNA (uracil-5-) -methyltransferase [Eubacterium rectale ATCC 33656] Length = 470 Score = 222 bits (567), Expect = 6e-56, Method: Composition-based stats. Identities = 83/410 (20%), Positives = 148/410 (36%), Gaps = 61/410 (14%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIF--------RSEPIHYRMRAEFHIW- 52 T YE+QL K+ ++++++ + + YR + EF Sbjct: 80 GCTYQTVPYEKQLDMKLTQVKKLISDAIGTEKESGYEFIGIHGSPKKSEYRNKMEFSFGD 139 Query: 53 -HDGDDLYHIMFDQQTK-ERMRIDYFMPGSLLINALMIEMMATIRLE-----------PL 99 + L M + + + + + ++ + Sbjct: 140 EYKDGPLALGMHKRGSFYDLVTVSDCQIVDEDFRTILKATLDYFSKNNIPYFHRATHKGY 199 Query: 100 LRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAW-----------RECAIRLRDALHARKYQ 148 LR L + T + +VT ++ R R + LH + Sbjct: 200 LRHLLVRKATKTGEIIVDLVTTTQTEGFNEEELLAGFRYALLTRHYDGRFKGVLHTKNDS 259 Query: 149 IQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKG 208 + + + T++ Y E+L L ++ SF Q N+ + E G Sbjct: 260 VADVVKNEGTEVLYGDSYFYEKLL----GLKFKITPFSFFQTNSLGAEVLYETAREFILG 315 Query: 209 IQGD------LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262 D + +LY G G + ++A V+ VEI + +V AA+ N A N ++N K + Sbjct: 316 DNKDSLNGKTVYDLYSGTGTIAQLMAPVCKEVVGVEIVEEAVCAAKENAALNGLDNCKFI 375 Query: 263 RMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILY 320 LK +D + I +DPPR G+ +G + Y +++Y Sbjct: 376 AGDV---------------LKVLDEIEEKPDYIILDPPRDGIHPKAIGKIIEYGVENMVY 420 Query: 321 ISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRKPSGW 369 ISC P SL RDL I + +E++ D FP T H+E VL+ + G Sbjct: 421 ISCKPTSLARDLQIFMDRGYRVEKICCVDMFPNTYHVETVVLMSKVNPGK 470 >gi|50122491|ref|YP_051658.1| 23S rRNA 5-methyluridine methyltransferase [Pectobacterium atrosepticum SCRI1043] gi|115298496|sp|Q6D178|RUMA_ERWCT RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|49613017|emb|CAG76468.1| 23S rRNA (uracil-5-)-methyltransferase [Pectobacterium atrosepticum SCRI1043] Length = 450 Score = 222 bits (566), Expect = 6e-56, Method: Composition-based stats. Identities = 78/358 (21%), Positives = 139/358 (38%), Gaps = 30/358 (8%) Query: 13 QLAEKVDRLRQMML---AFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQT-- 67 Q + K L +MM ++ + P YR RA ++ + +M +Q+ Sbjct: 105 QQSSKTAALMRMMTRETGIELSAASLIAGTPYAYRRRARLALYFQAKEQRLLMGYRQSNS 164 Query: 68 KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLL 127 + + I + AL+ + + ++ +L ++ + +++ +V R L Sbjct: 165 HDLVDIKACPVLRPELEALLQPLRDCLSQLSAVK-RLGHVELVQAENGPLLVL----RHL 219 Query: 128 DDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSF 187 D LRD + + L A + V L F Sbjct: 220 DPLHPADEQALRDFAQRQGVSVYLAPDAESLTCLHGEEPV-----YHVAGLTLAFSPRDF 274 Query: 188 TQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246 Q N +N M+ LA Q +L+L+CG GNF+L LA+ V+ VE VE Sbjct: 275 IQVNDAVNQQMVAQALAWLDVQSQDRILDLFCGMGNFTLPLAQRAASVVGVEGVTALVEK 334 Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306 R N N ++NV + ++ + + F I +DP R+G Sbjct: 335 GRENARRNALSNVTFFHQNLED------------DVTQQPWAAQGFDKILLDPARAGAAG 382 Query: 307 ATVGMVQAYP-HILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVLL 362 + + P ++Y+SCN +L RD +L+ + + +A+ D FP+T H+E L Sbjct: 383 VMEQITRLAPKRVVYVSCNATTLARDSKVLLAAGYRLANVAMLDMFPHTGHLESMALF 440 >gi|325295665|ref|YP_004282179.1| RNA methyltransferase, TrmA family [Desulfurobacterium thermolithotrophum DSM 11699] gi|325066113|gb|ADY74120.1| RNA methyltransferase, TrmA family [Desulfurobacterium thermolithotrophum DSM 11699] Length = 432 Score = 222 bits (566), Expect = 6e-56, Method: Composition-based stats. Identities = 79/377 (20%), Positives = 150/377 (39%), Gaps = 40/377 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ---VPNL-QIFRSEP-IHYRMRAEFHIWHDGD 56 +YE Q+ K + L + + PN+ ++ SE +YR RA+ + Sbjct: 80 GCDWQHIEYEAQVKFKRNILEENLQKIGRIKKPNIDEVIPSESGWNYRNRAQLKV----K 135 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116 + F + + + + I+ I +M ++ + P + + +S ++ Sbjct: 136 NGKVGFFAKGSHQVVDIERCFLLKEDIQDIMPKLKRLLEELPTEPS---EFHIYSSSKNE 192 Query: 117 AIVTLIYH-RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC--LDRDYVDERLTV 173 ++ ++Y + +R ++ + I + + RD+ E + Sbjct: 193 VLLKIVYSGKFKKVNLTTEDVRKILEVNLVGFGIYKVCSDGYPERIKFFGRDFTYETVG- 251 Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFSLVLARHFD 232 +R +SF Q N ++++ V A Q +L +LYCG G ++ + R+ Sbjct: 252 ---KFKFRVSADSFFQVNRFQVFNLIDKVSKAAMEHQYNLAGDLYCGVGTLTIPVGRYVH 308 Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292 R VE ++ A YN N + +V ++E + ++ Sbjct: 309 RAFGVEANFSAISDALYNKDINGLRSVNFYCRETEEGLD--------------IVKNHNP 354 Query: 293 KTIFVDPPRSGLDDATVGMVQAYPH---ILYISCNPDSLCRDLSILSTTHTI--ERLALF 347 + VDPPRSGL V + P I+Y+SCNP +L RD+++ + I ER L Sbjct: 355 DFVVVDPPRSGLSQRVVRELANLPRLKKIVYVSCNPSTLARDIALFHQ-YGINMERAKLI 413 Query: 348 DQFPYTRHMECGVLLVR 364 D FP T H+E L + Sbjct: 414 DMFPQTYHVETIAFLRK 430 >gi|315179124|gb|ADT86038.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio furnissii NCTC 11218] Length = 443 Score = 222 bits (566), Expect = 6e-56, Method: Composition-based stats. Identities = 84/376 (22%), Positives = 148/376 (39%), Gaps = 37/376 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEP-----IHYRMRAEFHIWHDGD 56 L + Q+ K L Q+M F L + S P YR RA + D Sbjct: 90 GCDLQHLAHAAQIEHKQQALSQLMAKFAGQQLAL--SPPVSACDTGYRRRARLSLLWD-K 146 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRA--KLFQIDYLTSQS 114 + F + K+ I ++L +L + A L +L ++ + + + Sbjct: 147 KTQQLQFGFRRKQSKSIVTVTDCAVLEPSLNALLPALHALLSGFAHPEQLGHVELVKADN 206 Query: 115 DQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVA 174 + +V R L + L + + + + V A Sbjct: 207 TRVLVL----RHLAPLAAKDQSALAAFAAQHDLTLYRMPSSESLEHVCGDGAV---YGEA 259 Query: 175 GRTLIYRQIENSFTQPNAGINVHMLEWVLAA----TKGIQGDLLELYCGNGNFSLVLARH 230 G T+ + + ++F Q N +N M+ LA + +L+L+CG GNFSL LA+ Sbjct: 260 GVTIPF--LPSNFIQVNQQVNQAMVAQALAWLAVTPDTPEERVLDLFCGLGNFSLPLAKL 317 Query: 231 FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY 290 +V+ VE VE A+ N N ++NV + + ++ + + Sbjct: 318 AKQVVGVEGIDDMVERAKANATRNDLHNVSFYQANLEQ------------DMTGETWAAE 365 Query: 291 RFKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDL-SILSTTHTIERLALFD 348 +F + +DP R+G + ++Y+SCNP +L RD S+LS + +L + D Sbjct: 366 KFDKVLLDPARAGAAGIVDQLAALGAKRVVYVSCNPATLARDSQSLLSQGFQLVKLGMLD 425 Query: 349 QFPYTRHMECGVLLVR 364 FP+T H+E L V+ Sbjct: 426 MFPHTSHLESMALFVK 441 >gi|308272258|emb|CBX28864.1| Uncharacterized RNA methyltransferase CT0009 [uncultured Desulfobacterium sp.] Length = 470 Score = 222 bits (566), Expect = 6e-56, Method: Composition-based stats. Identities = 75/394 (19%), Positives = 135/394 (34%), Gaps = 56/394 (14%) Query: 9 QYEQQLAEKVDRLRQMMLAFQV-----PNLQIFRSEPIHYRMRAEFHIWHDG-------- 55 Y++QL K +++ + + + I YR + EF Sbjct: 94 NYDRQLYYKQQHVKEALEHIGLLQGVLVHPVIASESIFAYRNKMEFSCSDKKWVLPSEFV 153 Query: 56 DDLYHIMFDQQTK------ERMRIDYFM----PGSLLINAL-------MIEMMATIRLEP 98 F + + I + G+L++N + I + E Sbjct: 154 PGEKTAGFALGLHVPGTFDKVLDIKSCLLQPDTGNLILNDVKDFIKNSDIPVYGLRSHEG 213 Query: 99 LLRAKLFQIDYLTSQSDQAIVTLIYH----RLLDDAWRECAIRLRDALHARKYQIQLIGR 154 R + + + I+T + + L D E + ++ + Sbjct: 214 FWRFLMLRNSAAYGKWMVNIITSVQENKIVKPLSDMLMEKYPDVVSVINNITSSKAGVAI 273 Query: 155 ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDL 213 + + ++L V + NSF Q N + V A + + Sbjct: 274 GEYENVLAGYSCITDKLGV----FEFEISANSFFQTNTKGAQILYNKVKEFAQLSGKETV 329 Query: 214 LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273 ++LY G G + L+ + +EI + SV A+ N N ++N + K Sbjct: 330 IDLYSGTGTIPIFLSEDASEISGIEICESSVSDAKKNCIINGISNCTFITGDIK------ 383 Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRD 331 N ID + I +DPPR G+ V V + I+Y+SCNP +L RD Sbjct: 384 ------NSFSKIDK---KPDVIIIDPPRVGMHKDVVKQVVDISAERIVYVSCNPATLARD 434 Query: 332 LSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 L +L + + + D FP+T H+E L +K Sbjct: 435 LLVLKDYYDVMEVQPVDMFPHTFHIESVARLEKK 468 >gi|300721894|ref|YP_003711172.1| 23S rRNA m5U1939 methyltransferase [Xenorhabdus nematophila ATCC 19061] gi|297628389|emb|CBJ88954.1| 23S rRNA m5U1939 methyltransferase [Xenorhabdus nematophila ATCC 19061] Length = 451 Score = 222 bits (566), Expect = 7e-56, Method: Composition-based stats. Identities = 75/352 (21%), Positives = 139/352 (39%), Gaps = 25/352 (7%) Query: 19 DRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ--TKERMRIDYF 76 + L Q ++ I +S YR RA + ++ +M +Q T + + I Sbjct: 109 EHLIQRETGIKMSAHPIIQSPEYGYRRRARLGLQYNVKQRTLLMGFRQNQTNDLINIKRC 168 Query: 77 MPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAI 136 + L+ + + ++ +L ++ + + + I+ R LD E Sbjct: 169 PVMRPELEQLLQPLFQCLNGLNAVK-RLGHVELVLADNGPLIIL----RHLDPLKHEDRA 223 Query: 137 RLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINV 196 L ++ L G + L + + V G L++ F Q N +N Sbjct: 224 ALSIFSVQYNVKVYLAGDEKSLE-SLTKGQAEPWYQVDGLKLVF--SPRDFIQVNDEVNQ 280 Query: 197 HMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH 255 M+ L D +L+L+CG GNF+L +A V+ VE V + +YN N Sbjct: 281 QMVAQALMWLDLQPTDRVLDLFCGMGNFTLPMATKVQAVVGVEGVAALVSSGQYNARLNE 340 Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY 315 + NV + + + + + F + +DP R+G +V+ Sbjct: 341 LKNVDFFHENLE------------SDIHQQPWAALGFNKVLLDPARAGAAGVMSHIVKLA 388 Query: 316 P-HILYISCNPDSLCRDLSI-LSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 P ++Y+SCNP +L RD + L + + + + D FP+T H+E L R+ Sbjct: 389 PDKVVYVSCNPTTLARDSKVMLEAGYHLVSVRMLDMFPHTGHLESMALFSRE 440 >gi|292487220|ref|YP_003530092.1| putative SAM-dependent methyltransferase [Erwinia amylovora CFBP1430] gi|292900405|ref|YP_003539774.1| 23S_rRNA (uracil-5-)-methyltransferase [Erwinia amylovora ATCC 49946] gi|291200253|emb|CBJ47381.1| 23s rRNA (uracil-5-)-methyltransferase [Erwinia amylovora ATCC 49946] gi|291552639|emb|CBA19684.1| putative SAM-dependent methyltransferase [Erwinia amylovora CFBP1430] gi|312171321|emb|CBX79580.1| putative SAM-dependent methyltransferase [Erwinia amylovora ATCC BAA-2158] Length = 438 Score = 222 bits (566), Expect = 7e-56, Method: Composition-based stats. Identities = 76/337 (22%), Positives = 133/337 (39%), Gaps = 27/337 (8%) Query: 34 QIFRSEPIHYRMRAEFHIWHDG--DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMM 91 + YR RA + L+ ++ T+E + I + +NAL+ + Sbjct: 124 DVITGPAWGYRRRARLGLSFQPATQTLHMGFREKSTRELVNITHCPILKPELNALLQPLH 183 Query: 92 ATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQL 151 A + +R +L ++ + + + +V R LD +L H + L Sbjct: 184 AVLSGLQAVR-RLGHVELVQADNGPLLVL----RHLDALTTGDRQKLEQFSHKYNVSLYL 238 Query: 152 IGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG 211 ++ + L F Q N +N M+ L Sbjct: 239 AADSDSLEQVSGSMP-----HYRSDDLTLTFSPRDFIQVNDEVNQKMVARALVWLDLQPE 293 Query: 212 D-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270 D +L+L+CG GNF+L + + V+ VE V A YN N++NNV + + +E Sbjct: 294 DRVLDLFCGMGNFTLPIGKFAKNVVGVEGVAALVAKAGYNAELNNLNNVTFWQHNLEEDV 353 Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP-HILYISCNPDSLC 329 + F + +DP R+G + + P ++Y+SCNP +L Sbjct: 354 SR------------QPWAAQGFNKVLLDPARAGAAGVMAHIARLAPQRVVYVSCNPTTLA 401 Query: 330 RDLS-ILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 RD +L + + +ER+ + D FP+T H+E VL RK Sbjct: 402 RDSEILLGSGYQLERVTMLDMFPHTGHLESMVLFSRK 438 >gi|89095077|ref|ZP_01168004.1| 23S rRNA (uracil-5-)-methyltransferase [Oceanospirillum sp. MED92] gi|89080638|gb|EAR59883.1| 23S rRNA (uracil-5-)-methyltransferase [Oceanospirillum sp. MED92] Length = 449 Score = 222 bits (566), Expect = 7e-56, Method: Composition-based stats. Identities = 77/372 (20%), Positives = 134/372 (36%), Gaps = 29/372 (7%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSE----PIHYRMRAEFHIWH--DG 55 L ++ +Q+ K + + N + YR I Sbjct: 98 GCDLQHLEHSEQIKAKESLVLDQLQRLGKFNPESTTPPLSGSDQEYRRSCRIGINQLMRD 157 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115 + + + +++D IN ++ ++ A + + L+ Sbjct: 158 GTPIIGFRRRGSSKLLQVDNCPILINPINKILGKLKAVLSEADSCKE--ITHAELSMGDQ 215 Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175 Q +TL + L ++ +L + R Y N +I D D + Sbjct: 216 QGAMTLRIKKPLPESLSSSLQKLAEDNEFRLY------FDNGQQINAFGDEADLSYQLEK 269 Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRV 234 F Q NA +N M+ + D +L+L+ G GNFSL LA V Sbjct: 270 SETQIGFKPGDFIQVNASVNTQMINRAMDWLDLKDNDRVLDLFSGVGNFSLPLATKAGSV 329 Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294 + VE + V+ A+ N +NN + R + LK + + F Sbjct: 330 IGVEGVEDMVQRAQNNAKQAGLNNCEFYRADLSK------------DLKALPWYKQGFSK 377 Query: 295 IFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRD-LSILSTTHTIERLALFDQFPY 352 I +DPPR+G + + Q ILY+SCNP +L RD ++ + + + D FP+ Sbjct: 378 ILIDPPRTGALEVIKQLEQHQCDQILYVSCNPSALARDGAELIRQGYKASKFCVMDMFPH 437 Query: 353 TRHMECGVLLVR 364 T H+E VL + Sbjct: 438 TSHVESLVLFEK 449 >gi|308535284|ref|YP_002138867.2| RNA methyltransferase, TrmA family [Geobacter bemidjiensis Bem] gi|308052629|gb|ACH39071.2| RNA methyltransferase, TrmA family [Geobacter bemidjiensis Bem] Length = 444 Score = 222 bits (566), Expect = 7e-56, Method: Composition-based stats. Identities = 82/375 (21%), Positives = 143/375 (38%), Gaps = 25/375 (6%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIF-----RSEPIHYRMRAEFHIWHDGD 56 Y +QL +K + + ++ E YR R + + G Sbjct: 82 GCDWQHLPYAEQLKQKGEIFADTLARIGKVPRELVLPVSPSPECFGYRSRIQLKVARKGG 141 Query: 57 DLYHIMFDQQTKERMRIDY-FMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115 F + + + + + + L+N + E+ + P L + Q+D Sbjct: 142 IPTLGFFKRGSHDVVDLAAGCALAAPLLNQALAEVRGILPRLPQLEG-ITQVDLAMGDDG 200 Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDER----L 171 ++I Y + +C + R L + G + D + L Sbjct: 201 ESIAVFHYRGKDAASLLDCLLAARPELPSVTGAYVKTGEKGEMSAVFGVDSLSYGVPAGL 260 Query: 172 TVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARH 230 R + R F+Q N N+ +++ V +G +L+LYCGNGN S+ +A Sbjct: 261 FPGSREVRLRFSRGGFSQVNYRQNLELIKTVGEWGALREGARVLDLYCGNGNISVPIAPL 320 Query: 231 FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY 290 V+ VE PS+ A N AN N + + + + + + +E Sbjct: 321 VGEVVGVEGYAPSIVDAAANAEANGALNARYLVGDAALSVRRLAKRKE------------ 368 Query: 291 RFKTIFVDPPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILST-THTIERLALFDQ 349 +F + +DPPR+G + A + A ILY+SC+P +L RDL L + + R D Sbjct: 369 KFDLVVLDPPRAGAEAAGELAILAPERILYVSCDPATLARDLGQLCGAGYRVARSKPVDM 428 Query: 350 FPYTRHMECGVLLVR 364 FP T H+E L+R Sbjct: 429 FPQTYHLESVTELIR 443 >gi|308187944|ref|YP_003932075.1| enzyme [Pantoea vagans C9-1] gi|308058454|gb|ADO10626.1| putative enzyme [Pantoea vagans C9-1] Length = 456 Score = 222 bits (565), Expect = 8e-56, Method: Composition-based stats. Identities = 85/368 (23%), Positives = 158/368 (42%), Gaps = 46/368 (12%) Query: 13 QLAEKVDRLRQMMLAFQVPNL---QIFRSEPIHYRMRAEFHI-WHDGDDLYHIMFDQQ-T 67 Q K L +M+ N+ ++ +P YR RA + W + + F Q+ + Sbjct: 118 QQQSKAQALSRMLSRAAAQNVAVDEVIAGQPWGYRRRARLGLQWQNKAQRLQMGFRQEAS 177 Query: 68 KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLL 127 + + I + + + AL++ + + +R +L ++ + + + ++ Sbjct: 178 NDLVDIQHCPILAPELEALLVPLHQCLSALRAVR-RLGHVELVLADNGPLMI-------- 228 Query: 128 DDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIY------- 180 +R DALHA + +L ++K ++ L D +E L ++ + Sbjct: 229 --------LRHLDALHADDRE-KLEQFSHKHQLMLFLDAGEEELNALNESVPFYHSHQLK 279 Query: 181 -RQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVE 238 F Q N +N M+ +A D +L+L+CG GNF+L + V+ VE Sbjct: 280 LTFSPQDFIQVNDAVNQQMVAKAIAWLDLQPEDRVLDLFCGMGNFTLPVGIFVQNVVGVE 339 Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298 V A YN N++ NV + + +E + + F + +D Sbjct: 340 GIAALVRQAAYNADLNNLKNVSFFQHNLEE------------EVSRQPWAAQGFNKVLLD 387 Query: 299 PPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHM 356 P R+G +V+ P ++Y+SCNP +L RD +LS + +ER+A+ D FP+TRH+ Sbjct: 388 PARAGAAGVMAHVVKLAPERVVYVSCNPTTLARDSQTLLSAGYQLERVAMLDMFPHTRHL 447 Query: 357 ECGVLLVR 364 E VL + Sbjct: 448 ESMVLFRK 455 >gi|257066182|ref|YP_003152438.1| RNA methyltransferase, TrmA family [Anaerococcus prevotii DSM 20548] gi|256798062|gb|ACV28717.1| RNA methyltransferase, TrmA family [Anaerococcus prevotii DSM 20548] Length = 415 Score = 222 bits (565), Expect = 8e-56, Method: Composition-based stats. Identities = 70/369 (18%), Positives = 156/369 (42%), Gaps = 36/369 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLA---FQVPNLQIFRSEPIHYRMRAEFHIWHDGDDL 58 T++ Y++Q+ K + + + + ++ +L+I SE + YR + + G Sbjct: 76 GCTIMDINYDEQIKLKKNLITKAIKKTCAIEIDDLEIITSETLSYRNKIRLQVDKKGRLS 135 Query: 59 YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAI 118 Y+ + + + + I + + I + ++ + + + + S S + I Sbjct: 136 YN---KKSSNDLVEIKDCLLANEHIIENLGKIQNLVTTIVKDLGNIIREISIRSNSCE-I 191 Query: 119 VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTL 178 + IY + + ++ +D + + + L +D+ L + Sbjct: 192 LLNIYSKEEEKLYKYLKENHKDLPYNINIINKKKIK------TLGKDH----LIFKVKDK 241 Query: 179 IYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVE 238 ++ ++ F Q N ++ + LL+L+CG+G S+ L + D ++ +E Sbjct: 242 SFKVSKDDFYQVNDYQIENLYQNA-RKYLEKNKKLLDLFCGSGISSIAL--NDDNIVGIE 298 Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298 I K +++ A+ N N++ + K + ++ Q I + +T+ VD Sbjct: 299 INKSAIKDAKENAKINNLTDYKFIDKNANYIDQKF-------------IEKEKIQTVTVD 345 Query: 299 PPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRH 355 PPR+GLD + + +I+YISCNP +L RD+ + + ++ + D FP T H Sbjct: 346 PPRAGLDKEIIKTLAKTKIKNIIYISCNPQTLARDIKRFMDRGYELKEIKAVDMFPQTMH 405 Query: 356 MECGVLLVR 364 +E L+ + Sbjct: 406 VEAIALIQK 414 >gi|156740571|ref|YP_001430700.1| RNA methyltransferase [Roseiflexus castenholzii DSM 13941] gi|156231899|gb|ABU56682.1| RNA methyltransferase, TrmA family [Roseiflexus castenholzii DSM 13941] Length = 439 Score = 222 bits (565), Expect = 8e-56, Method: Composition-based stats. Identities = 84/372 (22%), Positives = 138/372 (37%), Gaps = 45/372 (12%) Query: 11 EQQLAEKVDRLRQMMLAFQVPNLQI-----FRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ 65 + Q + L + F + + F S+P YR H D ++ Sbjct: 99 DAQQRLRRQILADQLAKFAGVDPAVVEATAFASKPWEYRNNTRLHC----DGRRIGYYES 154 Query: 66 QTKERMRIDYFMPGSLLINALMIEMM----ATIRLEPLLRAKLFQIDYLTSQSDQAIVTL 121 T+ +D+ ++N + + + P L L ++ A+ Sbjct: 155 NTRSIAELDHDPLLHPVLNEALAALRSALADELDDAPPLEVTL-RVSEAYGYCIAALRGR 213 Query: 122 IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYR 181 R L WR L + L L D + E L L + Sbjct: 214 GDRRSLAARWRARCPVLAGVVFTVPPPHMLPP--------LGADTLVEELA----DLTFL 261 Query: 182 QIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240 +F Q N +L + A +G LL+LYCG G F+L LAR+ ++ VE Sbjct: 262 LRPTTFFQVNVAAAATLLNLIRAGLGDEARGRLLDLYCGAGAFTLPLARNAIEIVGVEEY 321 Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300 +V A + A NH++NV+ + S++ + F + +DPP Sbjct: 322 AGAVADAERSAAVNHISNVRFITGSAEAVLANLDGP---------------FDAVVLDPP 366 Query: 301 RSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHME 357 R G + + +A I+Y+SC+P +L RDL L + + + R D FP T H+E Sbjct: 367 RRGCHPRVLHALIERAPRRIVYVSCHPATLARDLKTLIAGGYAVVRATPVDLFPQTPHIE 426 Query: 358 CGVLLVRKPSGW 369 V L+R S Sbjct: 427 SVVALMRAGSAQ 438 >gi|269216883|ref|ZP_06160737.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Slackia exigua ATCC 700122] gi|269129690|gb|EEZ60774.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Slackia exigua ATCC 700122] Length = 442 Score = 222 bits (565), Expect = 8e-56, Method: Composition-based stats. Identities = 86/376 (22%), Positives = 139/376 (36%), Gaps = 41/376 (10%) Query: 10 YEQQLAEKVDRLRQMMLAFQVPNLQ---------IFRSEPIHYRMRAEFHIWHDGDDLYH 60 YE+QL EK D + ++ + + I P YR + EF D Sbjct: 88 YERQLVEKRDNIVAQLVKVAHVDAERAQSIVAPCIPSDRPWGYRNKLEFACATDASGFTM 147 Query: 61 IMFDQQTKERMRIDYFMPGSLLINALMIEMMATI-RLEPLLRAKLFQIDYLTSQSDQAIV 119 + + F GS + + + L ++++ S +++ Sbjct: 148 GYHRKGADGIVSPKEFPLGSHALAKAPKAVRGALRFLAGSNDLGIYRVGIRGSMRTKSLE 207 Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGR---ANKTK---ICLDRDYVDERLTV 173 ++ + A L AL A G A K K + Y ERL Sbjct: 208 VALWTEGGNFPRVAVAGTLARALKASSIVRVATGGPQGARKVKGVEVLHGTGYWKERLCQ 267 Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFD 232 ++ SF Q N ++E L A +GD + +LYCG G F++ LAR Sbjct: 268 Q----SFKITAPSFFQVNTEQAERLVETTLEALDVREGDEVADLYCGVGTFTIPLARTGA 323 Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292 V VE SV R ++ + ++ + RE L +D Sbjct: 324 HVYGVESYSSSVRDLRRVAEETELD-IDVIGGDAA---------RELPMLGHLDA----- 368 Query: 293 KTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILS-TTHTIERLALFDQ 349 + VDPPR+GLD + V + + Y+SC+P + RD++ + + R D Sbjct: 369 --VLVDPPRAGLDASLVKSIAEAGPTKVAYVSCDPATWARDVARFEAQGYELTRATPVDL 426 Query: 350 FPYTRHMECGVLLVRK 365 FP T H+E LL+RK Sbjct: 427 FPQTYHVETTSLLIRK 442 >gi|332881940|ref|ZP_08449582.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332680175|gb|EGJ53130.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 467 Score = 222 bits (565), Expect = 8e-56, Method: Composition-based stats. Identities = 74/391 (18%), Positives = 141/391 (36%), Gaps = 49/391 (12%) Query: 10 YEQQLAEKVDRLRQ---MMLAFQVPN--LQIFRSEPIHYRMRAEFHI----WHDGDDLYH 60 YE+QL K + + +P I + YR + EF W +++ Sbjct: 91 YERQLYYKQKEVENNLVRLGRIAIPQLMPIIGSDDIYFYRNKMEFSFSDMRWLTPEEIKK 150 Query: 61 IMFDQQTK-----------ERMRIDYFMPGSLLINALMIEMMATIRLEPL-------LRA 102 + + I ++ NA+ +E+ + + Sbjct: 151 ADEITDRNGLGFHIAGAWDKVLDIKKCYLQAVPSNAIRLEIKRFALENEMSFYSPRMQQG 210 Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162 L + S + + +V + + +D E + +Q + Sbjct: 211 LLRSMIIRLSSTGELMVVIQFFS--EDEKIELLLAHLANHFPEITSLQYCINSKGNDALY 268 Query: 163 DRDYV----DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLEL 216 D+D + + + L ++ SF Q N+ + E V ++GD + +L Sbjct: 269 DQDIICYKGQDCIYEEMEGLRFKINAKSFYQTNSKQAQRLYE-VARDFADLKGDELVYDL 327 Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276 Y G G + +A+ RV+ VE ++ A+ N AAN ++NV K Sbjct: 328 YTGTGTIAQFVAKRAKRVVGVEAVPEAIADAKANAAANGIDNVSFYVGDMKNVFN----- 382 Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSI 334 + + I DPPR G+ V + A ++Y+SCN + RDL++ Sbjct: 383 ------EAFIAANGVPDVIITDPPRDGMHKDVVAQILHIAPAKVVYVSCNSATQARDLAL 436 Query: 335 LSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 + + + ++ D FP T H+E VLL ++ Sbjct: 437 MDEQYKVTKVQPVDMFPQTYHVENVVLLEKR 467 >gi|330811210|ref|YP_004355672.1| 23S rRNA (uracil-5-)-methyltransferase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327379318|gb|AEA70668.1| 23S rRNA (uracil-5-)-methyltransferase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 456 Score = 222 bits (565), Expect = 8e-56, Method: Composition-based stats. Identities = 84/371 (22%), Positives = 145/371 (39%), Gaps = 30/371 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWHD--G 55 ++ +++QLA K L + + + YR RA + D Sbjct: 99 GCSVQHLPHDEQLALKQRMLAEQLSRVAGVVPEEWAAPLSGPEFGYRRRARVAVRWDQKA 158 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115 L +++ + I + +M + +R +A L ++ S Sbjct: 159 KKLEVGFRAVGSQDIVAIGDCPVLVQPLQPIMSRLPEMLRRLSKPQA-LGHVELFAGSS- 216 Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175 V L + L +A L+D + Q+ L G + + + RL Sbjct: 217 -LAVLLRHMAPLSEA---DLTILKDFCAFHEAQLWLHGEGEPQPVEPGQ-ALGFRLDAWD 271 Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRV 234 L YR F Q NAG+N M+ L + +L+L+CG GNF+L LA+ +V Sbjct: 272 LELAYR--PGDFIQVNAGVNEAMIAQALQWLAPQAEERVLDLFCGLGNFALPLAKSVRQV 329 Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294 +AVE + VE A N +N++NN + + L D + F Sbjct: 330 VAVEGVQTMVERAAANAVSNNLNNTAFFQADLSQ------------PLADAEWIGEGFSA 377 Query: 295 IFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRD-LSILSTTHTIERLALFDQFPY 352 + +DPPR G + + ++Y+SCNP +L RD + ++ + ++R + D FP Sbjct: 378 VLLDPPRDGAFEVVRKLSSLGAKRLVYVSCNPATLARDTVELIKQGYRLKRAGILDMFPQ 437 Query: 353 TRHMECGVLLV 363 T H+E L Sbjct: 438 TAHVEAMALFE 448 >gi|163782302|ref|ZP_02177300.1| RNA methyltransferase (TrmA-family) protein [Hydrogenivirga sp. 128-5-R1-1] gi|159882335|gb|EDP75841.1| RNA methyltransferase (TrmA-family) protein [Hydrogenivirga sp. 128-5-R1-1] Length = 425 Score = 222 bits (565), Expect = 8e-56, Method: Composition-based stats. Identities = 80/371 (21%), Positives = 144/371 (38%), Gaps = 38/371 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56 L Y Q+ K L + + I + YR+R +F + Sbjct: 79 GCQLQHIDYVTQVESKESILVETLQRIGKIKSVPLGEPIQSGQEFGYRVRVQFKV----K 134 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116 F E + ID IN L+ + ++ +R + D+ Sbjct: 135 SGKLGFFRWDEHEVVDIDNCPVAHPRINELIPSLKECVKH---IRELQEIHVNYSPSEDK 191 Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY--VDERLTVA 174 +V + +D RE L++ + +G ++ + L+R + E L V Sbjct: 192 FLVKFVTPTEMD---RELLSNLKEDCLPED--VVGVGDYSRLRTILNRRFWIGKEYLFVE 246 Query: 175 GRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRV 234 + +R +SF Q N I +E V + ++L+CG G F++ L+ + + Sbjct: 247 VSSWKFRVSADSFFQVNWTIWKSFIEAVSDVKSYRKA--IDLHCGVGFFTIPLSEKGNFI 304 Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294 + ++ A YN N +NV +R + ++ E Sbjct: 305 EGSDSNPSAINDAEYNAKLNGRDNVVFMRSDAYRHLKSRGGE--------------VLDL 350 Query: 295 IFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFP 351 + +DPPRSGL+ + ++ +I+Y+SCNP +L RDL +L +T+E++ L D FP Sbjct: 351 VVLDPPRSGLEKNEMELLVKNKPENIVYVSCNPSTLARDLKTLLRNGYTLEKIRLVDMFP 410 Query: 352 YTRHMECGVLL 362 T H+E L Sbjct: 411 QTYHIESVSFL 421 >gi|332637541|ref|ZP_08416404.1| 23S rRNA (uracil-5-)-methyltransferase [Weissella cibaria KACC 11862] Length = 459 Score = 222 bits (565), Expect = 9e-56, Method: Composition-based stats. Identities = 74/378 (19%), Positives = 143/378 (37%), Gaps = 40/378 (10%) Query: 10 YEQQLAEKVDRLRQMMLAFQV---PNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66 Y+ QL K +++++ A + I P HYR + + + L ++ Sbjct: 94 YDAQLRLKQQQVQKLYKAVGIDVDVAPTIGMDNPTHYRNKTVVPVKYVDGKLTTGFIKKR 153 Query: 67 T-KERMRIDYFMPGSLLINAL-----------MIEMMATIRLEPLLRAKLFQIDYLTSQS 114 T + + +D + I+ + + + E +R + + Y + + Sbjct: 154 TPGDIVPLDDYFVNDEKIDQIIGIVRDILDAHKVSVFDDDTQEGEMRYIMVRRGYYSHEV 213 Query: 115 DQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDER 170 +VT L + ++ + + + + + D + ++ Sbjct: 214 MVVLVTQTPTLTDEDAIAADIAAAVSGIKSIILNHNPRSLHVLTSGDNRTLWGADAIHDK 273 Query: 171 LTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLAR 229 L + + NSF Q N + + + + D +++ Y G G L +A Sbjct: 274 LL----DIDFEIGPNSFYQVNPQTTEVLYDMAATKGELKESDTVIDAYSGIGTIGLTVAD 329 Query: 230 HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHS 289 D+VL VE+ + +V A+ N+A N+V N + V + E Q + Sbjct: 330 RVDKVLGVEVIERAVIDAQKNVANNNVQNAEFVTADAPEQMQKWKD------------GG 377 Query: 290 YRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSIL-STTHTIE-RLA 345 + IFVDPPR GL + + V +Y+SCNP+++ RD L I+ + Sbjct: 378 LKPDVIFVDPPRRGLTEELLDAVADMNPDRFVYVSCNPETMARDARYLIDKGFRIKGDIQ 437 Query: 346 LFDQFPYTRHMECGVLLV 363 DQFP T H+E + Sbjct: 438 PLDQFPQTAHVEAVAVFE 455 >gi|227873615|ref|ZP_03991853.1| TrmA family RNA methyltransferase [Oribacterium sinus F0268] gi|227840533|gb|EEJ50925.1| TrmA family RNA methyltransferase [Oribacterium sinus F0268] Length = 422 Score = 222 bits (565), Expect = 9e-56, Method: Composition-based stats. Identities = 84/411 (20%), Positives = 147/411 (35%), Gaps = 62/411 (15%) Query: 2 SGTLLID-QYEQQLAEKVDRLRQMMLAFQVPNL----QIFRSEPIHYRMRAEFHIWHDGD 56 G + YE+++A+K +R + N I + YR + EF Sbjct: 29 GGCFYQEIPYEEEVAKKEREIRDLFDPVIQGNYLFEGIISSPKKEAYRNKMEFSFGDQEK 88 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATI--------------RLEPLLRA 102 D + Q + I L + ++AT R E LR Sbjct: 89 DGPLCLGLHQKRSFFNILNTEDCRLPHPDMGEILLATRLYFQEKSLRYYHKKRHEGYLRH 148 Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAI-----RL-------------RDALHA 144 L + ++ + +++L++ L E + RL LH Sbjct: 149 LLIR---RAEKTGEILLSLVHSTQLPAEEEEKILSGWRDRLLSLEKEGKLEGSYAGILHT 205 Query: 145 RKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA 204 + + + T+ +DY E L L ++ SF Q N + V Sbjct: 206 KNDSLADAVINDGTETLFGKDYFYEELL----GLNFKITPFSFFQTNTLGAEKLYAKVQE 261 Query: 205 -----ATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259 + + +LY G G + ++++ + + VEI + +VEAA+ N N V N Sbjct: 262 YSSFSENAEEKPVIYDLYSGTGTITQLMSKVAKQAIGVEIVEEAVEAAKENAKENKVENC 321 Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PH 317 + +A + E I VDPPR G+ + + +Y Sbjct: 322 IFYAGDVLKVLEAGQGATELPY----------PDFIIVDPPRDGMHKKALEKIISYGVKR 371 Query: 318 ILYISCNPDSLCRDLSILS-TTHTIERLALFDQFPYTRHMECGVLLVRKPS 367 ++Y++C P SL RDL L + +++L D FP T + E LL ++ S Sbjct: 372 LVYVACKPKSLARDLEALQNAGYKVQKLCAVDMFPRTNNCEVVALLEKEES 422 >gi|308048558|ref|YP_003912124.1| RNA methyltransferase, TrmA family [Ferrimonas balearica DSM 9799] gi|307630748|gb|ADN75050.1| RNA methyltransferase, TrmA family [Ferrimonas balearica DSM 9799] Length = 447 Score = 222 bits (565), Expect = 9e-56, Method: Composition-based stats. Identities = 83/367 (22%), Positives = 138/367 (37%), Gaps = 45/367 (12%) Query: 13 QLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTK 68 Q K L Q++ + HYR RA +D +L + + Sbjct: 102 QRDLKQQALAQVVSKLSGLTPEQWAEPLLGPDWHYRRRARLGCRYDAGELVLGFRQEGSN 161 Query: 69 ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLD 128 ID+ + ++ L+ + + L R L S+ +V L+ R L Sbjct: 162 RLTAIDHCPVLAEPLSELITPLQQLLAPLKLARHVGHLDLMLASEGPVVVVRLL--RPLR 219 Query: 129 DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ------ 182 + RE G++ ++ + D + + A L Y Sbjct: 220 EEEREALAAF--------------GQSRGVQMLIQGDALTDLSGQAVAPLHYDIGEGRPQ 265 Query: 183 ---IENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLARHFDRVLAVE 238 + F Q N +N M+ + + G+ L+L+CG GNF+L LA ++ VE Sbjct: 266 PAFLPGDFFQVNGVVNQAMISQAIEWLQPQPGEKGLDLFCGGGNFTLALAGQSAEIIGVE 325 Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298 VE AR A + ++ E+ + LKD+D + +D Sbjct: 326 GVPAMVERARARAAELGLEQLRF------EYADLNGEAPKAQWLKDVDW-------VLLD 372 Query: 299 PPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDLSILS-TTHTIERLALFDQFPYTRHM 356 P R+G + + P ILY++CNP SL RD +L+ + + RL L D FP+T H+ Sbjct: 373 PARAGAPGVMEWLAKLRPSRILYVACNPASLGRDGKVLAQQGYRLSRLGLVDMFPHTHHL 432 Query: 357 ECGVLLV 363 E L Sbjct: 433 ESMALFE 439 >gi|299143365|ref|ZP_07036445.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298517850|gb|EFI41589.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 444 Score = 222 bits (565), Expect = 9e-56, Method: Composition-based stats. Identities = 93/394 (23%), Positives = 151/394 (38%), Gaps = 53/394 (13%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMML--AFQVPNLQIFRSEPIH--YRMRAEFHI---WHD 54 T YE +L K + + ++ + L+ F S P+H YR + E+ + D Sbjct: 75 GCTYQTMSYECELEYKKNLITKLFKENDIEFEKLE-FISSPVHKAYRNKMEYTFSDEYKD 133 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGSL---LINALMIE-------MMATIRLEPLLRAKL 104 G + + E + D + +I +E +R +LR L Sbjct: 134 GPLSLGLHKKNRFYEVVNTDECNIVNEDFNIIRKFTLEYFKDKLKPYNRMRHTGILRHLL 193 Query: 105 FQIDYLTSQSDQAIVTLIYHR--LLDDAWRECAIRL------RDALHARKYQIQLIGRAN 156 + S + +V L+ D + E ++L +H Sbjct: 194 IR----RSSIGEVLVNLVTASSDFNFDEYFEELLKLGLSGKVVGIMHTINDSFSDAIVPE 249 Query: 157 KTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLE 215 K DY++E L L ++ SF Q N + + LL+ Sbjct: 250 KIIQYYGVDYINEELL----GLKFKVSCFSFFQTNTESAKVLYTLASNMLGDLDNKILLD 305 Query: 216 LYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275 LY G G + +L R L +EI K +VE+AR N N++NNVK + + + + Sbjct: 306 LYSGTGTITQILGRKAKSALGIEIVKDAVESARKNAEINNLNNVKFICDDVFKAVKEL-- 363 Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLS 333 Y+ I +DPPR G++ + + ++ LYISCNP + RDL Sbjct: 364 -------------EYKADVIVLDPPREGINPKAIDKIISFRPEKFLYISCNPITFVRDLK 410 Query: 334 I-LSTTHTIERLALFDQFPYTRHMECGVLLVRKP 366 I L + + I L DQFP T H+E LL R+ Sbjct: 411 IFLESGYEIIELKALDQFPRTNHIEIISLLSRQN 444 >gi|212224662|ref|YP_002307898.1| 23S rRNA (uracil-5-)-methyltransferase [Thermococcus onnurineus NA1] gi|212009619|gb|ACJ17001.1| 23S rRNA (uracil-5-)-methyltransferase [Thermococcus onnurineus NA1] Length = 419 Score = 222 bits (565), Expect = 9e-56, Method: Composition-based stats. Identities = 81/375 (21%), Positives = 145/375 (38%), Gaps = 42/375 (11%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEP-IHYRMRAEFHIWHDGDDLYH 60 L Y++QL K D+L +++ F ++++ S +R R + I +G Sbjct: 73 GCLLQHLPYDEQLKFKSDKLSEIL-GF---DVEVIPSPKIYGHRNRIDVVISTNGIGFRR 128 Query: 61 IMFDQQTKERMRIDYFMPGS--------LLINALMIEMMATIRLEPLLRAKLFQIDYLTS 112 + F S I + + LR + + T Sbjct: 129 RGTWWDVVDIEECPVFGKASGKVLRSLREFIEDHKPSLYEIGKNRGFLRYVVIREGKFTD 188 Query: 113 QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLT 172 + +VT L + + + + + + ++ ++++ ERL Sbjct: 189 ELMVNLVTAEGE--LPEEFPDYFDYADSIYWSVNRTPSDVSYGDVERV-WKKEFIRERL- 244 Query: 173 VAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD 232 + Y NSF Q N+ V+++ V +G + +L+LY G G F + LA+ Sbjct: 245 ---DDVAYLIHPNSFFQTNSYQAVNLVREVSRLVEGEK--VLDLYSGVGTFGVYLAKRGF 299 Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292 V +EI +VE A N N ++ V K+ + ++ Sbjct: 300 TVEGIEINPFAVEMANRNAELNGIDAV-FSVGEDKDV-----------------KNLAKY 341 Query: 293 KTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLSILSTTHTIERLALFDQF 350 TI +DPPR+GL V + I+Y+SCNP +L +L+ LS +++E D F Sbjct: 342 DTIILDPPRAGLHPKLVKKILKDEPQTIVYVSCNPKTLKLNLNELSGKYSVEEAVGLDMF 401 Query: 351 PYTRHMECGVLLVRK 365 P+T H+E V L K Sbjct: 402 PHTPHIEVVVKLKHK 416 >gi|50086080|ref|YP_047590.1| 23S rRNA 5-methyluridine methyltransferase [Acinetobacter sp. ADP1] gi|90126208|sp|Q6F847|RUMA_ACIAD RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|49532056|emb|CAG69768.1| 23S rRNA (Uracil-5-)-methyltransferase(23S rRNA(M-5-U1939)-methyltransferase) [Acinetobacter sp. ADP1] Length = 463 Score = 221 bits (564), Expect = 1e-55, Method: Composition-based stats. Identities = 89/367 (24%), Positives = 156/367 (42%), Gaps = 31/367 (8%) Query: 12 QQLAEKVDRLRQMMLAFQ----VPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ-- 65 QQ+ K L + F L RS YR RA + + IM + Sbjct: 108 QQIQIKQHVLASHLQHFAGLTVNEWLTPVRSLRADYRRRARVGVRYIPAKQKLIMGFREH 167 Query: 66 QTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHR 125 + I ++ + E+ + + +A++ I+ + +++ R Sbjct: 168 GSNRLTPIQSCAVLDQRLSQALPELYDVLNRL-VAKAEIGHIELAMGDDEVSLLV----R 222 Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLT--VAGRTLIYRQI 183 L+ +L D + +Q+ L + + + +DR + RL V L + Sbjct: 223 HLNTLPDSDITQLCDYAQHKNWQLYLQAKGSDSLKRVDRSGAEMRLHYAVPAFNLNFAFS 282 Query: 184 ENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFD---RVLAVEI 239 FTQ NA +N ML+ K +G+ +L+L+CG GNFSL LAR RV+ VE Sbjct: 283 PLDFTQVNATVNQQMLKLACDLLKLQKGEHVLDLFCGLGNFSLPLARCVGDTGRVVGVEG 342 Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299 ++ V+ A N A N ++NV+ S++ T+ N+ F + +DP Sbjct: 343 SEEMVQRAFENAAQNALHNVEFY---SQDLTKDFSHHSWANQ---------GFDALLIDP 390 Query: 300 PRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHME 357 PRSG + + I+Y+SCNP +L RD +L+ + ++++ + D F +T H+E Sbjct: 391 PRSGAFEIMHYIANFEAKRIVYVSCNPATLARDAGVLAQHGYQLKKVGVMDMFTHTEHVE 450 Query: 358 CGVLLVR 364 L + Sbjct: 451 SIALFEK 457 >gi|261253890|ref|ZP_05946463.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Vibrio orientalis CIP 102891] gi|260937281|gb|EEX93270.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Vibrio orientalis CIP 102891] Length = 439 Score = 221 bits (564), Expect = 1e-55, Method: Composition-based stats. Identities = 79/371 (21%), Positives = 158/371 (42%), Gaps = 30/371 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRS---EPIHYRMRAEFHIWHDGDDL 58 + E Q K L Q+M F +++ + YR RA + + Sbjct: 90 GCNMQHLAIEPQQEHKQQTLGQLMSKFAGQRIKLEAPVVGDSKGYRRRARVSLKLNKKTR 149 Query: 59 Y--HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116 +Q+K+ + + + ++AL+ + + E + L ++ + + + Sbjct: 150 QLEFGFRKKQSKDIVTVTHCPVLDRDLDALLAPL-HQLLSEFSNQESLGHVELVKGDNTK 208 Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGR 176 IV L + + L ++ ++ L + L+ +++ + + AG Sbjct: 209 VIV-LRHLKALQESEQQGLETLAK---QHNATLYLMPESDQLNRVVGESA---NYSEAGV 261 Query: 177 TLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVL 235 T+ + N+F Q N +N M+ L + + D +L+L+CG GNFSL +A+ +V+ Sbjct: 262 TIPFE--PNNFIQVNQKVNQSMVAQALDWLELDEHDCVLDLFCGLGNFSLPMAQKVKQVI 319 Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295 VE V+ A+ N N ++N + + ++ +E +F I Sbjct: 320 GVEGVDAMVDKAQDNATVNGISNAAFHQANLEQDFSGQLWAQE------------KFDKI 367 Query: 296 FVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYT 353 +DP R+G + Q ++Y+SCNP +L RD S+L+ + +++L + D FP+T Sbjct: 368 LLDPARAGASGIIEHISQLGASRVVYVSCNPATLARDSQSLLNQGYKLQKLGMLDMFPHT 427 Query: 354 RHMECGVLLVR 364 H+E L V+ Sbjct: 428 SHLESMALFVK 438 >gi|57642070|ref|YP_184548.1| 23S rRNA (uracil-5-)-methyltransferase [Thermococcus kodakarensis KOD1] gi|57160394|dbj|BAD86324.1| 23S rRNA (uracil-5-)-methyltransferase [Thermococcus kodakarensis KOD1] Length = 417 Score = 221 bits (564), Expect = 1e-55, Method: Composition-based stats. Identities = 80/375 (21%), Positives = 142/375 (37%), Gaps = 44/375 (11%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEP-IHYRMRAEFHIWHDGDDLYH 60 L YE+Q+ K ++ + + ++ + S +R R + I G Sbjct: 74 GCLLQHLPYEKQIEFKSEK----LSRYIGTDVDVIPSPVIYGHRNRIDVVISTGGIGFRR 129 Query: 61 IMFDQQTKERMRIDYFMPGSLL--------INALMIEMMATIRLEPLLRAKLFQIDYLTS 112 + F S I + + LR + + T Sbjct: 130 YGTWWDAVDIEECPVFGKTSRKVLKSLREFIEDEKPTLYEIRKNAGFLRYIVMREGKFTG 189 Query: 113 QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLT 172 + +VT L +++ E + + + + ++ E+L Sbjct: 190 ELMVNLVT--SEGKLPESFPEYFPYATSIYWSVNRTESDVSYGDVER-YWGEPFIREKL- 245 Query: 173 VAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD 232 + Y NSF Q N+ V+++ V +G + +L+LY G G F + LA+ Sbjct: 246 ---DDVTYLIHPNSFFQTNSYQAVNLVRKVAELVEGEK--VLDLYSGVGTFGIYLAKRGF 300 Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY-R 291 +V +EI +VE A+ N N V+ EF +D D++S Sbjct: 301 KVEGIEINPFAVEMAKKNAQINGVD-------------------AEFRVGEDKDVNSLSE 341 Query: 292 FKTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLSILSTTHTIERLALFDQ 349 + T+ VDPPR+GL V + ++Y+SCNP +L ++L LS + IE D Sbjct: 342 YDTVVVDPPRAGLHPKLVRKILKDRPETLVYVSCNPKTLSQNLKELSEGYKIEEAVGLDM 401 Query: 350 FPYTRHMECGVLLVR 364 FP+T H+E + L + Sbjct: 402 FPHTPHVEAVLKLRK 416 >gi|255994151|ref|ZP_05427286.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Eubacterium saphenum ATCC 49989] gi|255993819|gb|EEU03908.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Eubacterium saphenum ATCC 49989] Length = 399 Score = 221 bits (564), Expect = 1e-55, Method: Composition-based stats. Identities = 81/392 (20%), Positives = 146/392 (37%), Gaps = 50/392 (12%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPNLQI--FRSEP--IHYRMRAEFHIW---HDGDDLYHI 61 YE QL K + ++ ++ + + P YR + EF +G+ Sbjct: 24 SYE-QLKIKDELVKTLIDKKGLKVDTLLPIEKSPNMYRYRNKMEFTFGNSEREGELKLGF 82 Query: 62 MFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-----------LRAKLFQIDYL 110 + + I N ++ + LR + + Sbjct: 83 HEKGNYRNIVDIHSCQLVDTDYNEILNAVRQFAFQNNYDFYNKKKHNGFLRHLVIRSGIR 142 Query: 111 TSQSDQAIVTLIYHRLLDDAWR--------ECAIRLRDALHARKYQIQLIGRANKTKICL 162 TS+ +VT + + L LH +IQ +I Sbjct: 143 TSEIIVNLVTSSSDLANFNTESFVNLLTSLKLNNELVGILHTVNDKIQDTANGEDIRILY 202 Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNG 221 RDY ER+ L ++ SF Q N ++ + + + +Q ++ +L+CG G Sbjct: 203 GRDYYMERIM----DLDFKVRMGSFFQTNVQAAENLYRYAINSIDNVQDKVIFDLFCGTG 258 Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281 + LA +V+ V+I+ ++++A N N +NNV R E + + Sbjct: 259 TITQSLAGAAKKVIGVDISDDAIKSAIENTKLNKINNVSFYRGDVFEVIRNINE------ 312 Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCRDLSILS-TT 338 + I +DPPR+G++ + +V+ P I+YISCNP +L +L Sbjct: 313 ---------KPDVIVLDPPRAGVNAKALEKIVEFSPREIVYISCNPKTLIDNLYFFEYNR 363 Query: 339 HTIERLALFDQFPYTRHMECGVLLVRKPSGWH 370 + I+ L FD F +T H+E LL + + H Sbjct: 364 YNIKSLKAFDNFFFTSHVEAVALLSKLNTDKH 395 >gi|257126196|ref|YP_003164310.1| (uracil-5)-methyltransferase [Leptotrichia buccalis C-1013-b] gi|257050135|gb|ACV39319.1| (Uracil-5)-methyltransferase [Leptotrichia buccalis C-1013-b] Length = 476 Score = 221 bits (564), Expect = 1e-55, Method: Composition-based stats. Identities = 71/395 (17%), Positives = 144/395 (36%), Gaps = 56/395 (14%) Query: 10 YEQQLAEKVDRLRQMMLAF----QVPNLQIFRSEPIHYRMRAEFHIWH--DGDDLYHIMF 63 Y++QL K + +++ + + + +P YR + EF + G + + Sbjct: 95 YDEQLEIKTEHIKKELDRIIKYDYIFEEPVRSVKPDKYRNKMEFSFGNAAKGGPIILGLH 154 Query: 64 DQQT-KERMRID-----------YFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLT 111 Q + + + +D ++ + + + R + + T Sbjct: 155 KQNSFHDIVEVDGLKLMDDNFNKIYVFCNEFCKKTGFDFYHRLDHIGFFRNLVIRKAEFT 214 Query: 112 SQSDQAIVTLIYHRLLDDAWRE-------------CAIRLRDALHARKYQIQLIGRANKT 158 Q IVT ++ + ++ LH + + Sbjct: 215 KQILVNIVTTTQISEMEKEKFQKEFKEGLLALNLDDNFKITGILHTFNDNFSDMVISESE 274 Query: 159 KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ------GD 212 I Y + LT L ++ SF Q N+ + VL + I+ Sbjct: 275 TIL----YGERDLTEEIFGLKFKISPYSFFQTNSQTVEKLYGKVLTYLEEIENIKIDEAT 330 Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + +L+ G G ++++ +V +E+ +VE A N N++ N + Sbjct: 331 VFDLFSGTGTIGQIVSKKAKQVYGIELVPEAVEKANENAKLNNIQNAHFIAGDV------ 384 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330 F +L + D + + +DPPR+G+ + T+ + Y +I+Y+SCNP +L Sbjct: 385 ------FAKLDEFDNDGIKPDILILDPPRAGVGEKTITKLVKYNTKNIIYVSCNPKTLMT 438 Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364 DL + + R ++ D FP T H+E LL + Sbjct: 439 DLIKFGEFGYRLVRCSVVDMFPVTPHLEVVCLLEK 473 >gi|312880126|ref|ZP_07739926.1| RNA methyltransferase, TrmA family [Aminomonas paucivorans DSM 12260] gi|310783417|gb|EFQ23815.1| RNA methyltransferase, TrmA family [Aminomonas paucivorans DSM 12260] Length = 458 Score = 221 bits (564), Expect = 1e-55, Method: Composition-based stats. Identities = 84/394 (21%), Positives = 139/394 (35%), Gaps = 50/394 (12%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHI-WHDG 55 L Y QL K + LR + + + YR + + W Sbjct: 82 GCQLQHASYPFQLRAKEEALRDALRRLGGLDDSAVEPCVPSPRVLGYRNKVVLPVRWTPE 141 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGSL-------------LINALMIEMMATIRLEPLLRA 102 + +++ + + + P L + ++ R LR Sbjct: 142 GGSALGFYQRRSHQVVPLVSGCPVLEERLHSLLSLALPFLKDPILQPYREGTRPSGFLRE 201 Query: 103 KLFQIDYLTSQSDQAIVTL-IYHRLLDDAWRECAIRLRDALHA-------RKYQIQLIGR 154 + + T +S +V R + + L + L Q Sbjct: 202 VVARCGSRTGESALCLVVRRTPERREETFLKALHHHLSETLPGFRGTALHIAPQPGNFIW 261 Query: 155 ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDL 213 + T+ L + E L + + SF Q N+ + E VL + QG L Sbjct: 262 SGTTRPFLGATDLHESLGPYR--IRFEVS--SFFQVNSLQAELLYEDVLESLGEEAQGHL 317 Query: 214 LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVN-NVKIVRMSSKEFTQA 272 LELY G G+ SL LA V AVE P+ E+ + N AA+ + + ++ +++ + Sbjct: 318 LELYSGVGSLSLFLASRARSVQAVEEWLPATESLQANAAAHGLEQRLSVLSGKAEDVLEK 377 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCR 330 + R+ F + +DPPR G + + ++Y+SCNP +L R Sbjct: 378 LARD--------------SFDGVVLDPPRGGCHPKVLERILDLDPKKVVYVSCNPATLAR 423 Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMECGVLLV 363 DL IL I L FD FP T H+E LL Sbjct: 424 DLRILVDGGFRIRSLRPFDLFPQTAHVETRALLT 457 >gi|225574546|ref|ZP_03783156.1| hypothetical protein RUMHYD_02623 [Blautia hydrogenotrophica DSM 10507] gi|225038233|gb|EEG48479.1| hypothetical protein RUMHYD_02623 [Blautia hydrogenotrophica DSM 10507] Length = 452 Score = 221 bits (564), Expect = 1e-55, Method: Composition-based stats. Identities = 87/393 (22%), Positives = 149/393 (37%), Gaps = 48/393 (12%) Query: 2 SGTLL-IDQYEQQLAEKVDRLRQMMLAFQVPNLQ---IFRSE-PIHYRMRAEFHIW---H 53 G + YE+QL K ++++++ + + I+ S HYR + EF Sbjct: 79 GGCMYQTMPYEEQLKMKQAQVKEILDRAVLGEYEYENIYGSPQEFHYRNKMEFSFGDAEK 138 Query: 54 DGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEP-----------LLRA 102 DG + T + + + ++ + R LR Sbjct: 139 DGPLTLGLHKKGSTYDVLTAGDCQLVHQDMTKILTCVWEYFRDRKVSYYKKMQHMGYLRH 198 Query: 103 KLFQIDYLTSQSDQAIVTLIYHRL-LDDAWREC-----AIRLRDALHARKYQIQLIGRAN 156 L + T + +VT L +E ++ +H + + +++ Sbjct: 199 LLLRRGTTTGEILVHLVTTSQEEHDLTPLKQELLGLGLEGKIVGIMHIINDSLSDVVKSD 258 Query: 157 KTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-E 215 +T+I +DY E L L ++ SF QPN + V + + ++ + Sbjct: 259 ETRILYGQDYFYETLM----GLKFKISTFSFFQPNTLAAEVLYNIVRSYVGETKDKVVFD 314 Query: 216 LYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275 LY G G S +LA V+ VEI + +VEAAR N N + N + + Sbjct: 315 LYSGTGTISQILAEVSKEVVGVEIVEEAVEAARENARMNGLKNCRFIAGDV--------- 365 Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLS 333 L+ +D + I +DPPR G+ + + I+YISC SL RDL Sbjct: 366 ------LRVLDELEEKPDMIVLDPPRDGIHPKALPKILDYGVDRIVYISCKVTSLARDLE 419 Query: 334 ILST-THTIERLALFDQFPYTRHMECGVLLVRK 365 + + +E+ DQF T H+E LL RK Sbjct: 420 LFQERGYRVEKCTAVDQFCQTVHVETICLLERK 452 >gi|15838949|ref|NP_299637.1| 23S rRNA 5-methyluridine methyltransferase [Xylella fastidiosa 9a5c] gi|20140309|sp|Q9PAY7|RUMA_XYLFA RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|9107532|gb|AAF85157.1|AE004045_15 RNA methyltransferase [Xylella fastidiosa 9a5c] Length = 443 Score = 221 bits (564), Expect = 1e-55, Method: Composition-based stats. Identities = 78/373 (20%), Positives = 136/373 (36%), Gaps = 27/373 (7%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWHDGDD 57 L + Q+ K L + + + + +E YR + F + Sbjct: 87 GCVLQHLAEDAQVVSKQRVLLESLERIGRVSPERVLPALAAESWGYRRKGRFSVRWVEKK 146 Query: 58 LYHIMFDQQTKERMRIDYFMPGSLLINAL--MIEMMATIRLEPLLRAKLFQIDYLTSQSD 115 ++ + + + ++ + I ++AT+ R + QI+++ + Sbjct: 147 GRTLV-GFREHDPRFVADVSVCHTVVPQVGEKIALLATLLNSLDGRRDVPQIEFIAGDA- 204 Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175 V + R L + L + I L ++ L D V + Sbjct: 205 ---VVALTVRHLQPLSEADRLALIEFGKEHGIAIFLQSGGVESVRLLWPDEVLLAFRLKP 261 Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRV 234 + + F Q N G+N M+ L G +L+L+CG GNF+L LAR D V Sbjct: 262 WDVEFVFRPLDFIQINGGLNEKMIAHALDLLGAGFGERVLDLFCGLGNFTLPLARTVDEV 321 Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294 + VE VE AR N N + N + +D F Sbjct: 322 VGVEGDIGLVERARENARRNGLGNAEFFVADLT------------RDQRDAPWMRQGFDK 369 Query: 295 IFVDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDLSIL--STTHTIERLALFDQFP 351 + +DPPRSG + + ++ + I+Y+SC+P SL RD L + + D FP Sbjct: 370 LLLDPPRSGAIEVLKQLPLKMFERIVYVSCHPGSLARDADFLVNEQGFVLRAVGAMDMFP 429 Query: 352 YTRHMECGVLLVR 364 +T H+E + R Sbjct: 430 HTAHVESIAVFDR 442 >gi|313905584|ref|ZP_07838946.1| Methyltransferase type 11 [Eubacterium cellulosolvens 6] gi|313469531|gb|EFR64871.1| Methyltransferase type 11 [Eubacterium cellulosolvens 6] Length = 570 Score = 221 bits (564), Expect = 1e-55, Method: Composition-based stats. Identities = 87/409 (21%), Positives = 144/409 (35%), Gaps = 80/409 (19%) Query: 15 AEKVDRLRQMMLAFQVPNLQIFRSEPI--HYRMRAEFHIW---HDGDDLYHIMFDQQTKE 69 A K + ++ ++ + + P+ YR + E+ DG + T + Sbjct: 155 AYKEEAVKTSVVPDYT--FEGVKGSPVNNGYRNKMEYSFGDDQKDGPLTLGLHKKASTYD 212 Query: 70 RMRIDYFMPGSLLINALMIEMMATIRLE-----------PLLRAKLFQIDYLTSQSDQAI 118 + D N ++ ++ + LR L + +T + + Sbjct: 213 ILTADDCQIVHEDFNRILRCVLDFCTEKNWPYLRKMTHVGYLRHLLVRRAVMTGEILVDL 272 Query: 119 VTLIYH----------RLLDDAWR-----------------------------ECAIRLR 139 VT + + L E + Sbjct: 273 VTTSQYEMDLSEGNPRKQLTGEEMSRTREMRTEESLTAEQGDLMELTARIQALELEGEIT 332 Query: 140 DALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML 199 LH + + + + T I RDY E L L ++ SF Q N+ + Sbjct: 333 GILHTVNDSLADVVQNDHTDILAGRDYFYEELL----GLKFKITPFSFFQTNSKGAEVLY 388 Query: 200 EWVLAATKGIQG-DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN 258 I + +LY G G + +LA V+ VEI + +VEAA+ N A N ++N Sbjct: 389 RTAREFLGDIDNQTVFDLYSGTGTIAQMLAPVAKNVVGVEIVEEAVEAAKENAALNGLDN 448 Query: 259 VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--P 316 + + LK +D + + TI +DPPR G+ + + AY Sbjct: 449 CRFIAGDV---------------LKVLDELTEKPDTIVLDPPRDGIHPKALPKIVAYGVE 493 Query: 317 HILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 I+YISC P SL RDL L + +ER+ D FP T H+E LL R Sbjct: 494 KIIYISCKPSSLARDLPYFLRHGYRLERMCCVDMFPGTVHVEVVSLLQR 542 >gi|195020688|ref|XP_001985248.1| GH16956 [Drosophila grimshawi] gi|193898730|gb|EDV97596.1| GH16956 [Drosophila grimshawi] Length = 613 Score = 221 bits (564), Expect = 1e-55, Method: Composition-based stats. Identities = 81/423 (19%), Positives = 159/423 (37%), Gaps = 68/423 (16%) Query: 3 GTLLIDQYEQQLAEKVDRLRQMMLAF----------QVPNLQIFR-----SEP--IHYRM 45 L YEQQL +K + + ++ + P+L F+ P YR Sbjct: 160 CPLAEMPYEQQLEQKTEEMSALLKKYTQELRRLNADAKPHLDKFQFNGVLPSPIVQGYRN 219 Query: 46 RAEFHIWHDGDDLYHIMFDQQT--------KERMRIDYFMPGSLLINALMIEMMATIRLE 97 + EF + + + + F + E ++ + + +++ + + Sbjct: 220 KNEFTVGKNAEGEIVVGFRLGSYSDGSVEVAEVQQLPHLPAQAKWAAQSFQQLVRQSKFQ 279 Query: 98 PLL------RAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWR-ECAIRLRDALHARKYQIQ 150 P + + ++ + +V IY L +A + E L++ + + Sbjct: 280 PFNPVGNVGHFRQLMVRSSSATGELMLVAGIYSSNLSEAEQLELQQELKNFYEQAEQNAE 339 Query: 151 LIGRA---------------NKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGIN 195 + N L ++ + + + L +R +F Q N Sbjct: 340 HKCTSLYYQDVKHREAGQMVNPVTHLLGSTHITDTI----QELQFRISPLAFFQINTAGA 395 Query: 196 VHMLEWVLA-ATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAAN 254 + + + A +L++ CG G +L ARH +VL VEI +++ A YN +AN Sbjct: 396 NVLYQQAIDLAAPSKDTTMLDICCGTGTIALAFARHCKQVLGVEIVPDAIKDAEYNASAN 455 Query: 255 HVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ- 313 + N K ++ +F ++M RE + + + VDPPR+GL + ++ ++ Sbjct: 456 GITNCKFFAGNADDFIKSMVREALYGQEPGKPVDL----IAVVDPPRAGLHNRSIAAIRS 511 Query: 314 --AYPHILYISCNPDSLCRDLSIL---------STTHTIERLALFDQFPYTRHMECGVLL 362 A ++Y+SCNP S R+ L + D FP+T H E +L Sbjct: 512 ASAIKRLVYVSCNPHSAKRNFIELARPESKQYKGEPFYSKSAVAVDMFPHTTHTELVILF 571 Query: 363 VRK 365 R+ Sbjct: 572 ERE 574 >gi|254523364|ref|ZP_05135419.1| 23S rRNA (uracil-5-)-methyltransferase [Stenotrophomonas sp. SKA14] gi|219720955|gb|EED39480.1| 23S rRNA (uracil-5-)-methyltransferase [Stenotrophomonas sp. SKA14] Length = 444 Score = 221 bits (563), Expect = 1e-55, Method: Composition-based stats. Identities = 89/377 (23%), Positives = 138/377 (36%), Gaps = 33/377 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWH--DG 55 L QQ+ K L + E YR + F + Sbjct: 88 GCVLQHLDEGQQIVAKQRVLMDNLERIGHVKPGTVLAPLVGESWGYRRKGRFSVRRVEKK 147 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115 D +Q + + + I +E ++ + + QI+++ D Sbjct: 148 DKTLVGFREQDPRFVADLSQCLTVIPEI-GTKVEALSLFIESLDGKRDIPQIEFIAG--D 204 Query: 116 QAIVTLIYH-RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVD--ERLT 172 QA+V + H + L DA R + I L T L+ V RL Sbjct: 205 QAVVLTVRHLQPLSDADRASWAAFGQ---QHGFVIYLQSGGVDTVQPLEGQGVPLSFRLA 261 Query: 173 VAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHF 231 L +R F Q NA +N M+ L G +L+L+CG GNF+L LAR Sbjct: 262 PWDVELAFR--PLDFIQVNAKLNEKMIAHALDLLEPGEDERVLDLFCGLGNFTLPLARRV 319 Query: 232 DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291 V+ VE V AR N N + N + S + TQ R + Sbjct: 320 REVVGVEGDAGLVARARENAERNGLANAQFF---SADLTQDQRSTAWMRQ---------G 367 Query: 292 FKTIFVDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDLSIL--STTHTIERLALFD 348 F + +DPPRSG + + ++ + I+Y+SC+P SL RD L T+ D Sbjct: 368 FDKLLLDPPRSGAIEVLQQLPLKQFKRIVYVSCHPGSLARDAGYLVNEQGFTLVSAGAMD 427 Query: 349 QFPYTRHMECGVLLVRK 365 FP+T H+E + ++ Sbjct: 428 MFPHTAHVESIAVFEKR 444 >gi|308798929|ref|XP_003074244.1| RNA methyltransferase family protein (ISS) [Ostreococcus tauri] gi|116000416|emb|CAL50096.1| RNA methyltransferase family protein (ISS) [Ostreococcus tauri] Length = 1009 Score = 221 bits (563), Expect = 1e-55, Method: Composition-based stats. Identities = 79/434 (18%), Positives = 145/434 (33%), Gaps = 84/434 (19%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-------VPNLQIFRSEPIHYRMRAEFHIWHD 54 YE Q K +R+ + + + + E YR + EF D Sbjct: 586 GCAWQHVDYETQRERKGRTVREALTRVGRFVDGDDLTSACVGTKETTRYRNKMEFAFGSD 645 Query: 55 G-DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLE-PLLRAKLFQIDYLTS 112 + + + T + + F G LL + ++++ +R +R ++ D T Sbjct: 646 ASGGVVVGLRPRGTNDSIVDLEF--GCLLQSEAADDVLSAVRASLKRVRGRIDAFDRTTG 703 Query: 113 QS-------------------DQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIG 153 + + T + L I A + Sbjct: 704 KGTLRSVTIRTATSGDGKRSLMVDLATTASEKELTSGALAELIADITKHEAVTSVVHTTV 763 Query: 154 RA-------------------------NKTKICLDRDYVDERLTVAGRTLIYRQIENSFT 188 A K + + E L + + SF Sbjct: 764 PAEAELRRAGVGRSAKFVKGGKKPISKRKVVTLYGENKIVETLH----GVKFELSSASFF 819 Query: 189 QPNAGINVHMLEWVLAATK---GIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 Q N ++ V+A +L+L+CG G L +A + RV+ E+ +VE Sbjct: 820 QTNTEQAARLVREVVAGCGFAGDRSETVLDLFCGVGTMGLSVASNAKRVIGWEVVPEAVE 879 Query: 246 AARYNIAANHVNNVKIVRMSSKEF-----TQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300 AR N N + N R+ T+A+ + + L DI + DP Sbjct: 880 DARRNAEINGITNADFYRVDLSRLNPSKGTKALLTTPQGDVLPMPDI-------VITDPA 932 Query: 301 RSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTT--------HTIERLALFDQF 350 R G+D + + +++ I+Y+SCNP + RDL++++ + ++ D F Sbjct: 933 RPGMDASLIAILRTIGARRIVYVSCNPATQARDLALITAPSQGSQDAAYVLKLCTPVDMF 992 Query: 351 PYTRHMECGVLLVR 364 P+T H+E +L R Sbjct: 993 PHTAHVESVAVLDR 1006 >gi|160903249|ref|YP_001568830.1| RNA methyltransferase [Petrotoga mobilis SJ95] gi|160360893|gb|ABX32507.1| RNA methyltransferase, TrmA family [Petrotoga mobilis SJ95] Length = 446 Score = 221 bits (563), Expect = 1e-55, Method: Composition-based stats. Identities = 83/389 (21%), Positives = 157/389 (40%), Gaps = 46/389 (11%) Query: 2 SGTLLID-QYEQQLAEKVDRLRQMMLAFQVPNL----QIFRSEP-IHYRMRAEFHIWHDG 55 G +D Y+ QL K + +++ + + I S+ YR R E+ + Sbjct: 77 GGCQWLDYDYKSQLKSKTEIVKEQLERIGKLDSSVVNDIIESDLIWGYRNRMEYTF-QEN 135 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGS-----------LLINALMIEMMATIRLEPLLRAKL 104 + L + + + I L+N L IE+ + +L+ + Sbjct: 136 NKLKLGLNIANSNNVLDIYSCPISPNLFDNIRNKFRELVNKLNIEIYDKKTKKGILKHLV 195 Query: 105 FQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLR---DALHARKYQIQLIGRANKTKIC 161 + + +Q+ IVT + ++ ++ + +H ++ R K Sbjct: 196 IRRSFSKNQTMVIIVTNTEYLPYEEEIKQFFQQNFHPYSLIHLMNSSDSVVLRGP-YKTL 254 Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKG---IQGDLLELYC 218 L ++E ++ SF Q N + +L +L K +L+LY Sbjct: 255 LGEGVLNEEF----DDFKFQIPPTSFFQNNYNVTQKLLRHILEYFKSNAQKDATMLDLYS 310 Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278 G G FS+ + F + +VE +K SV+AA N N NV + SSK + Sbjct: 311 GVGLFSIYFSPLFKHIESVETSKVSVKAAIANSHINFTKNVNFILASSKPYL-------- 362 Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLSILS 336 + S RF + +DPPR GL+ + ++ + I+Y+SC+P + RDL++ + Sbjct: 363 ------MKNSSKRFDYVILDPPRKGLEKKEIQLLSSMAKKGIIYVSCDPSTFARDLNLFT 416 Query: 337 T-THTIERLALFDQFPYTRHMECGVLLVR 364 T++ + FD FP++ H+E +L + Sbjct: 417 KNGFTLKSVQPFDMFPHSYHIENVGILEK 445 >gi|28199269|ref|NP_779583.1| 23S rRNA 5-methyluridine methyltransferase [Xylella fastidiosa Temecula1] gi|32130010|sp|Q87BR3|RUMA_XYLFT RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|28057375|gb|AAO29232.1| RNA methyltransferase [Xylella fastidiosa Temecula1] gi|307578259|gb|ADN62228.1| 23S rRNA 5-methyluridine methyltransferase [Xylella fastidiosa subsp. fastidiosa GB514] Length = 443 Score = 221 bits (563), Expect = 1e-55, Method: Composition-based stats. Identities = 77/373 (20%), Positives = 135/373 (36%), Gaps = 27/373 (7%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWHDGDD 57 L + Q+ K L + + + + +E YR + F + Sbjct: 87 GCVLQHLAEDAQVVSKQRVLLESLERIGCVSPERVLPALAAESWGYRRKGRFSVRWVEKK 146 Query: 58 LYHIMFDQQTKERMRIDYFMPGSLLINAL--MIEMMATIRLEPLLRAKLFQIDYLTSQSD 115 ++ + + + ++ + I ++AT+ R + QI+++ + Sbjct: 147 GRTLV-GFREHDPRFVADVSVCHTVVPQVGEKIALLATLLDSLDGRCDVPQIEFIAGDA- 204 Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175 V + R L + L + I L ++ L D V + Sbjct: 205 ---VVALTVRHLQPLSEADRLALIEFGKEHGIAIFLQSGGVESVRLLWPDEVLLAFRLKP 261 Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRV 234 + + F Q N G+N M+ L G +L+L+CG GNF+L LAR V Sbjct: 262 WDVEFVFRPLDFIQINGGLNEKMIAHALDLLGAGFGERVLDLFCGLGNFTLPLARTVGEV 321 Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294 + VE VE AR N N + N + +D F Sbjct: 322 VGVEGDIGLVERARENARRNGLGNAEFFVADLT------------RDQRDAPWMRQGFDK 369 Query: 295 IFVDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDLSIL--STTHTIERLALFDQFP 351 + +DPPRSG + + ++ + I+Y+SC+P SL RD L + + D FP Sbjct: 370 LLLDPPRSGAIEVLKQLPLKMFERIVYVSCHPGSLARDADFLVNEQGFVLRAVGAMDMFP 429 Query: 352 YTRHMECGVLLVR 364 +T H+E + R Sbjct: 430 HTAHVESIAVFDR 442 >gi|291459844|ref|ZP_06599234.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Oribacterium sp. oral taxon 078 str. F0262] gi|291417634|gb|EFE91353.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Oribacterium sp. oral taxon 078 str. F0262] Length = 466 Score = 221 bits (563), Expect = 2e-55, Method: Composition-based stats. Identities = 81/444 (18%), Positives = 146/444 (32%), Gaps = 88/444 (19%) Query: 2 SGTLL-IDQYEQQLAEKVDRLRQMMLAFQVPNL---QIFRSE-PIHYRMRAEFHIW---- 52 G YE+QLA K +R+++L + I S YR + EF Sbjct: 24 GGCFYQGVPYEEQLAIKEREIRELLLPAALGEYRFENILPSPKESAYRNKMEFSFGDQEK 83 Query: 53 --------HDGDDLYHI------------------------------MFDQQTKER---- 70 H ++I + +++ Sbjct: 84 GGPLCLGLHQKRSFFNILNADDCRLPDPDFGVLLRLTREYFASLSIDYYHKKSHGGYLRH 143 Query: 71 -----------MRID-----YFMPGSL--LINALMIEMMATIRLEPLLRAKLFQIDYLTS 112 + +D F G+ L + + + P + ++ Sbjct: 144 LLIRRAVKTGEILVDLVSSSDFPKGAEPALSPGAVPSIREEVGGAPEKKDVKEDGSGISD 203 Query: 113 QSDQAIVTLIYHRLLD-DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERL 171 +++ ++ LL + + R+R LH R + T+I D++ E L Sbjct: 204 AAEREMLLGWSALLLRAEEEGKLRGRIRGILHTRNDALSDAVIDEGTEILWGEDFICEEL 263 Query: 172 TVAGRTLIYRQIENSFTQPNAGINVHML-----EWVLAATKGIQGD---LLELYCGNGNF 223 L +R SF Q N+ + L+ G G + +LY G G Sbjct: 264 L----GLRFRISPFSFFQTNSLGAEKLYSKIRDYAALSLPAGRGGQKPVIYDLYSGTGTI 319 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 + +++ + +E+ +V AAR N N + N + + E R Sbjct: 320 TQLMSLAASLSIGIELVPEAVRAARENARDNGITNCAFFAGD---VLKVISEGEELIRED 376 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSIL-STTHT 340 + I +DPPR G+ + + AY P ++Y++C P S RDL L + Sbjct: 377 GSRYPAPHPDLIILDPPRDGIHPKALRKIIAYASPALIYVACKPKSFARDLLPLQEAGYR 436 Query: 341 IERLALFDQFPYTRHMECGVLLVR 364 ++ D FP T + E LL + Sbjct: 437 LQSCCPVDMFPQTNNCELVALLSK 460 >gi|256544972|ref|ZP_05472341.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Anaerococcus vaginalis ATCC 51170] gi|256399339|gb|EEU12947.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Anaerococcus vaginalis ATCC 51170] Length = 455 Score = 221 bits (563), Expect = 2e-55, Method: Composition-based stats. Identities = 80/396 (20%), Positives = 154/396 (38%), Gaps = 55/396 (13%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLA--FQVPNLQIFRSEP-IHYRMRAEFHI---WHDG 55 + YE +L K D +++++ + +L I RS YR + E+ + DG Sbjct: 81 GCSYQKMGYETELLLKYDMIKKLLKNSHIDIADLSIIRSPKIKEYRNKMEYTFGDSYKDG 140 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGS---LLINALMIEMMATIRLE--------PLLRAKL 104 + + + E + D I + + LLR + Sbjct: 141 PLVLGLHRQNRFYEIVDTDGCNIVDSDFETIRKHVQKYFREKNTSFYHKKAHTGLLRNLI 200 Query: 105 FQIDYLTSQSDQAIVT------------LIYHRLLDDAWRECAIRLRDALHARKYQIQLI 152 + T + +VT L H LL+ + R+ H + Sbjct: 201 VRKALHTGEIMVVLVTSSDKSFDPMRRDLFAHNLLNAKTK---GRIVSIYHVINDSLSDA 257 Query: 153 GRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQG 211 + + ++ + Y++E++ L ++ SF QPN + + + A Sbjct: 258 VKVDSIELLFGKKYIEEKM----NDLKFQISPFSFFQPNVYTAEKIYQKAIELANVDKNK 313 Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271 ++L+LY G G + + A+ ++ + +EI + +VE A N N + N+ + Sbjct: 314 NVLDLYSGTGTITQLFAKSANKAMGIEIIEEAVEKAFDNAKENEIENINFIAGDV----- 368 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLC 329 L+ ID+ ++ + +DPPR G+ + + + +YISCNP + Sbjct: 369 ----------LEKIDLVKGKYDIVVIDPPREGIHPKAIKKIIDISPEEFVYISCNPKTQV 418 Query: 330 RDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364 RDL I + I++ FDQFP +RH+E L+ + Sbjct: 419 RDLEIFIKNGYKIKKYQAFDQFPRSRHVETIALIQK 454 >gi|293390947|ref|ZP_06635281.1| RNA methyltransferase [Aggregatibacter actinomycetemcomitans D7S-1] gi|290951481|gb|EFE01600.1| RNA methyltransferase [Aggregatibacter actinomycetemcomitans D7S-1] Length = 438 Score = 221 bits (562), Expect = 2e-55, Method: Composition-based stats. Identities = 86/364 (23%), Positives = 157/364 (43%), Gaps = 32/364 (8%) Query: 11 EQQLAEKVDRLRQMMLAFQVPNLQI---FRSEPIHYRMRAEFHIWHDGD--DLYHIMFDQ 65 E Q + K L Q + Q +Q+ + EP HYR R + D L + + Sbjct: 98 ELQRSAKQKALIQRLSRLQPEPIQLMPLLQGEPWHYRRRVRLSMGFDSKTRKLSIGLRRK 157 Query: 66 QTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHR 125 ++ + +++ +N L+ ++ A + + +L I+ + + A++ R Sbjct: 158 NAQQIIPLEHCPVLEQPLNDLLPKLTA-LFAQWSAPQQLGHIELAAADNGIAMLL----R 212 Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIEN 185 + + L A ++ + L + T ++ + + L + + Sbjct: 213 HIKNVAENDRTLLLKF--AERHHLMLFVQEQDT---IEHWHGGQPFYRLDNDLTLQFDIS 267 Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 F Q NA +N M+ L + D +L+L+CG GNF+L +AR + +E V Sbjct: 268 DFIQINAALNRQMINTALDWLALNERDHVLDLFCGMGNFTLPIARRVKSAVGIEGVSAMV 327 Query: 245 EAARYNIAANHVNNVKIVRMSSKE-FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 E AR N N +NV+ + + F ++ FN+ I +DPPR+G Sbjct: 328 EKARRNAERNRCHNVQFDQADLDKSFVNQGWAQQPFNK-------------ILLDPPRTG 374 Query: 304 LDDATVGMVQAY-PHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVL 361 A + Q +ILY+SCNP +L RD IL + + ++++A+ D FP+T H+E L Sbjct: 375 AAFALNALCQLQAENILYVSCNPATLVRDTEILHNAGYQLDKVAMIDMFPHTGHLESISL 434 Query: 362 LVRK 365 +K Sbjct: 435 FRKK 438 >gi|194707300|gb|ACF87734.1| unknown [Zea mays] Length = 360 Score = 221 bits (562), Expect = 2e-55, Method: Composition-based stats. Identities = 66/336 (19%), Positives = 124/336 (36%), Gaps = 48/336 (14%) Query: 61 IMFDQQTKERMRIDYFMPGSLLINALMIEMMA-TIRLEPL--------LRAKLFQID-YL 110 FD+ + P ++ + M I L P L+ + + + Sbjct: 42 GFFDKVLHVQKCFLQSEPADKVLAVVQETWMDPAIGLTPYDVHKHVGFLKHLMIRTGRNI 101 Query: 111 TSQSDQAIVTLIYHRLLDDAWRECAIRLRDA------LHARKYQIQLIGRANKTKICLDR 164 ++ + + +V + D ++ ++ + + + Sbjct: 102 STGTPEVMVNFVTSCYKPDVLMPLVDKITKIPEVVSVINNVNSSVGNSSVGEQEYTLYGK 161 Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD----LLELYCGN 220 + E L R L ++ NSF Q N +L ++ + G++GD +L+L+CG Sbjct: 162 PNITEML----RGLAFQISANSFFQTNTKQAD-VLYKLIEDSAGLKGDGSEIVLDLFCGT 216 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 G L AR + E+ ++E AR N N +NN V+ + ++ +E Sbjct: 217 GTIGLTFARRAKHIYGYEVVPEAIEDARKNAKLNGINNATFVQGDLNKINESFGKEF--- 273 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTT 338 + I DP R G+ + + P I+Y+SCNP + RDL L Sbjct: 274 ---------PKPDIIISDPNRPGMHMKLIKWLLEVKAPRIVYVSCNPATCARDLDYLCHG 324 Query: 339 ---------HTIERLALFDQFPYTRHMECGVLLVRK 365 + ++ + D FP+T H+EC LL + Sbjct: 325 VEEKDLRGFYELKSVIPVDMFPHTPHIECVCLLELR 360 >gi|269120866|ref|YP_003309043.1| RNA methyltransferase, TrmA family [Sebaldella termitidis ATCC 33386] gi|268614744|gb|ACZ09112.1| RNA methyltransferase, TrmA family [Sebaldella termitidis ATCC 33386] Length = 456 Score = 221 bits (562), Expect = 2e-55, Method: Composition-based stats. Identities = 73/392 (18%), Positives = 138/392 (35%), Gaps = 46/392 (11%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLA--FQVPNL--QIFRSEPIHYRMRAEFHIW----- 52 T Y QL K ++R++ N + + YR + E Sbjct: 80 GCTYQHLSYNDQLELKTGQIRELFGGKQIDFENFLGIVPAKQQFGYRNKMELTFGNAEKD 139 Query: 53 -------HDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIE---MMATIRLEPLLRA 102 H Y I+ + K M D+ + I+ E ++ LR Sbjct: 140 GPLTLGLHKRGSFYDIITIRDCK-LMDEDFNKITNFTIDFFKKENLSFYHKMKHTGFLRN 198 Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWR------ECAIRLRDALHARKYQIQLIGRAN 156 + + T + ++T + WR E + ++ L I + Sbjct: 199 LVIRKGEFTGELLINLITTSQSDYDMNEWRNGILSLELSKKIIGLLWTINDNISDAVNSE 258 Query: 157 KTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-E 215 KI E+L ++ SF Q N+ + VL + ++ + Sbjct: 259 SEKILYGEKDFHEKLLGHD----FKISPYSFFQTNSSGAELLYSKVLEFLPDTEDKIIFD 314 Query: 216 LYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275 L+ G G +++++ V +E+ + +VE A N N++ N K + Sbjct: 315 LFSGTGTIGQIVSKNARYVYGIELVEEAVEKANENAELNNIKNCKFIAGDV--------- 365 Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLS 333 F + +++ R + DPPR+G+ + + + I+Y+SCNP + +D+ Sbjct: 366 ---FKKAEELREADIRPDIVIFDPPRAGVGQKALEKILEFDMNEIIYVSCNPKTFIQDVE 422 Query: 334 ILST-THTIERLALFDQFPYTRHMECGVLLVR 364 IL + + D FP T H+E LL + Sbjct: 423 ILKKSGFELVKSVCVDMFPNTPHVEVVSLLEK 454 >gi|291547098|emb|CBL20206.1| 23S rRNA m(5)U-1939 methyltransferase [Ruminococcus sp. SR1/5] Length = 484 Score = 221 bits (562), Expect = 2e-55, Method: Composition-based stats. Identities = 84/411 (20%), Positives = 148/411 (36%), Gaps = 68/411 (16%) Query: 2 SGTLL-IDQYEQQLAEKVDRLRQMM-------------LAFQVPNLQ----------IFR 37 G + YE Q K ++R+++ + I+ Sbjct: 37 GGCMYQTMSYEAQKEMKERQVRELLDGAVKESLAKIGKNGDGTEEAEAADHLYHWDGIYG 96 Query: 38 SE-PIHYRMRAEFHI---WHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMA- 92 S YR + EF + DG + T + + D + +++ + Sbjct: 97 SPIEFGYRNKMEFSFGDEYKDGPLSLGLHKKGSTYDILNTDDCKLVHPDMTKILVCVREF 156 Query: 93 ----------TIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRL---- 138 ++ LR L + + + +VT + +E + L Sbjct: 157 FLERNASFYKKLQHVGYLRHLLLRRGVTSGEILVHVVTTTQEEYDLEPLKEQLLALPLEG 216 Query: 139 --RDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINV 196 +H + + ++++TKI +DY E L L ++ SF QPN+ Sbjct: 217 KIVGIMHILNDSLSDVVQSDETKILYGKDYFYEELL----GLKFKISTFSFFQPNSLAAE 272 Query: 197 HMLEWVLAATKGIQGDLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH 255 + V + ++ +LY G G + + A V+ VEI + +V+AAR N A N Sbjct: 273 ILYSKVREYVGDTRDKVVFDLYSGTGTIAQLAASVASEVIGVEIVEDAVKAARENAALNG 332 Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY 315 ++N + + LK +D + I +DPPR G+ + + AY Sbjct: 333 IDNCRFIAGDV---------------LKVLDEVPEKPDMIILDPPRDGVHPKALPKILAY 377 Query: 316 P--HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHMECGVLLV 363 I+YISC SL RDL + + + DQF H+E VLL Sbjct: 378 GVDQIVYISCKVTSLVRDLPAFYEAGYEMTHACAVDQFCQGVHVETIVLLS 428 >gi|239905414|ref|YP_002952153.1| 23S rRNA (uracil-5-)-methyltransferase [Desulfovibrio magneticus RS-1] gi|239795278|dbj|BAH74267.1| 23S rRNA (uracil-5-)-methyltransferase [Desulfovibrio magneticus RS-1] Length = 450 Score = 221 bits (562), Expect = 2e-55, Method: Composition-based stats. Identities = 77/384 (20%), Positives = 138/384 (35%), Gaps = 49/384 (12%) Query: 9 QYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63 Y QL K +++ + + + E YR + EF L+ + Sbjct: 88 DYPAQLFWKREQVAETLARLGGLPDVPVADTVASPEVYGYRNKMEFAF---AGRLHLGLR 144 Query: 64 DQQTKERM-RIDYFM-----------PGSLLINALMIEMMATIRLEPLLRAKLFQIDYLT 111 +++ R+ ID L + + + R + + Sbjct: 145 ERRNPARVLDIDTCPLMAPWAGEVVNAVRELCRETGLAAYDPRTGKGVWRHLVLRDSRHD 204 Query: 112 SQSDQAIVTLIYHRLLDDAWRECAI-------RLRDALHARKYQIQLIGRANKTKICLDR 164 I+T R DA L +H+ + + + I L R Sbjct: 205 GSRLAHIITG-PSRAAGDAVHTLGKTLLARFPELTGFVHSVRRAPTPVAHGERQSIVLGR 263 Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWV-LAATKGIQGDLLELYCGNGNF 223 ++ E++ A R + ++F Q N G + E V A+ G L+LYCG+G Sbjct: 264 GHLTEKMGQA----TLRVLPDAFAQTNTGAAQSLYEIVTREASSDPAGTALDLYCGSGGL 319 Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 +L LA F V ++I S+E+A+ + + +N E Sbjct: 320 ALNLAPAFAEVRGLDIDPRSIESAKASAKLSEAHNCVF--------------EAADAADA 365 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILSTTHTI 341 D+ + +DPPR+G + + A ++Y+SCNP +L RDL L+ + + Sbjct: 366 LDDLAGDPPTVVVLDPPRAGAAPEVIAAILRTAPGRVVYVSCNPATLARDLKRLAEAYDV 425 Query: 342 ERLALFDQFPYTRHMECGVLLVRK 365 + D FP+T H+E L + Sbjct: 426 TSVTPVDLFPHTAHIEAVASLTLR 449 >gi|229846419|ref|ZP_04466527.1| 23S rRNA 5-methyluridine methyltransferase [Haemophilus influenzae 7P49H1] gi|229810512|gb|EEP46230.1| 23S rRNA 5-methyluridine methyltransferase [Haemophilus influenzae 7P49H1] gi|309972509|gb|ADO95710.1| 23S rRNA m5U1939 methyltransferase [Haemophilus influenzae R2846] Length = 530 Score = 221 bits (562), Expect = 2e-55, Method: Composition-based stats. Identities = 88/369 (23%), Positives = 154/369 (41%), Gaps = 32/369 (8%) Query: 11 EQQLAEKVDRLRQMMLAFQVPNLQIFRS----EPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66 E Q K L + + Q F+ + YR R +W + + M +Q Sbjct: 98 EMQRKAKESALFKRLSKLQS-EPISFQPMICGDAWAYRRRVRLSLWFNPNTKQIDMGFRQ 156 Query: 67 --TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 T + + + IN L+ ++ A + + +L I+ + + + A++ L Y Sbjct: 157 KNTNDLIPVQSCEVAEPAINYLLPKLTALLEKFSAPK-QLGHIELVAADNGVAML-LRYT 214 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + L + R ++ A + ++ L +++K +++ Y D + Sbjct: 215 KNLAEIDRTLLLKF-----AEQEKLMLFLQSDKG---IEQIYGDAPYYQFSDGIKLHFDI 266 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 F Q N +N M+ L + Q D +L+L+CG GNF+L LA+ + +E Sbjct: 267 RDFIQVNRALNERMVNTALDWLELSQQDCVLDLFCGMGNFTLPLAKRVKSAVGIEGVFEM 326 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 V+ A N A N + N++ + + + + F I +DPPRSG Sbjct: 327 VQKAAQNAARNQIKNIEFFQADLDQ------------SFVEQPWDNQSFNKILLDPPRSG 374 Query: 304 LDDATVGMVQAY-PHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVL 361 A + + ILY+SCNP +L RD IL + IE+ A+ D FP+T H+E VL Sbjct: 375 AAFALNALCELKAEKILYVSCNPATLVRDAEILCDFGYKIEKSAVIDMFPHTGHLETVVL 434 Query: 362 LVRKPSGWH 370 L + H Sbjct: 435 LSKLDVDKH 443 >gi|77919151|ref|YP_356966.1| RNA methyltransferase [Pelobacter carbinolicus DSM 2380] gi|77545234|gb|ABA88796.1| 23S rRNA m(5)U-1939 methyltransferase [Pelobacter carbinolicus DSM 2380] Length = 434 Score = 221 bits (562), Expect = 2e-55, Method: Composition-based stats. Identities = 89/371 (23%), Positives = 139/371 (37%), Gaps = 26/371 (7%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLA-----FQVPNLQIFRSEPIHYRMRAEFHIWHDGD 56 L Y +Q K R ++ ++ + + YR R + + Sbjct: 81 GCQWLHLPYAEQCHWKETIFRDFLVRKLDVDSELVRPIVPSPQQWGYRSRVQLKCLNTPK 140 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116 + + + + +D+ L+N + + I + QID DQ Sbjct: 141 GFLVGFYRRGSHYVIPVDHCPILHPLLNQAKDLLRSWIENTRW-SQFVSQIDLAV--DDQ 197 Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGR 176 V + H L +D + L+ + + + K + V+ + V Sbjct: 198 ERVRAVVHCLANDV-DDFVTHLKPGALSANMGL-FVQTGRKHNLQHVCGPVELLIEVDTP 255 Query: 177 TLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVL 235 L F Q N N M+ E V G +L+L+CG GNFSL +AR V+ Sbjct: 256 ELRLGYGPGGFAQINLPQNRAMVREVVGTLVSNPPGRVLDLFCGMGNFSLPVARLAQEVV 315 Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295 VE S+E AR N N + NV +A E+ ID+ + Sbjct: 316 GVEAYLQSIEMARLNARLNEIENVSFFA------REAYGAATEYGADGAIDL-------V 362 Query: 296 FVDPPRSGLDDATVGMVQAYP-HILYISCNPDSLCRD-LSILSTTHTIERLALFDQFPYT 353 +DPPRSG D +V P ILY+SC+P +L RD L +L + + FD FP+T Sbjct: 363 IMDPPRSGAYDVARELVTVRPARILYVSCDPPTLVRDLLPLLHNGYRLVWSRPFDLFPHT 422 Query: 354 RHMECGVLLVR 364 H E L R Sbjct: 423 HHTESITFLER 433 >gi|299782720|gb|ADJ40718.1| 23S rRNA (Uracil-5-)-methyltransferase RumA [Lactobacillus fermentum CECT 5716] Length = 312 Score = 221 bits (562), Expect = 2e-55, Method: Composition-based stats. Identities = 70/327 (21%), Positives = 118/327 (36%), Gaps = 40/327 (12%) Query: 58 LYHIMFDQQTKERMRIDYFMPG-----------SLLINALMIEMMATIRLEPLLRAKLFQ 106 + ++ + + + LI L I + +++ + Sbjct: 1 MVAGLYQANSHTVVDMQTCAVQMPGTMKVINTLVKLIEELAIPVYNEANQSGIIKTLAVR 60 Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIG-------RANKTK 159 T Q AI+T + A + + D L +Q + ++T Sbjct: 61 ESLATGQIQVAIITNTAKLIKKHA---LLVAIEDQLPEVTSVVQNVNPGDTPLVWGDETT 117 Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYC 218 + +DY+ E L L +R SF Q N + E A + D L++ Y Sbjct: 118 LLYGQDYITESLM----GLDFRLSARSFLQLNPEQTEVLYEEAAKALDLSKDDTLIDAYA 173 Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278 G G L LA +V+ +E +V+ A N N V N + ++E R Sbjct: 174 GIGTIGLSLANRVKQVIGMETIADAVQDANNNATLNGVTNARYEVGPAEELLPKWRS--- 230 Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILS 336 F + VDPPR+GLD+A + + + Y+SCN +L R+L+ L Sbjct: 231 ---------QGQHFDALVVDPPRTGLDNALIDTILQEKPAKFAYVSCNMATLARNLARLV 281 Query: 337 TTHTIERLALFDQFPYTRHMECGVLLV 363 T+ + + D P T E V LV Sbjct: 282 PTYRVAYIQPVDMLPQTPRCEAVVKLV 308 >gi|110834485|ref|YP_693344.1| RNA methyltransferase [Alcanivorax borkumensis SK2] gi|123050449|sp|Q0VP26|RUMA_ALCBS RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|110647596|emb|CAL17072.1| RNA methyltransferase, TrmA family [Alcanivorax borkumensis SK2] Length = 445 Score = 221 bits (562), Expect = 2e-55, Method: Composition-based stats. Identities = 76/380 (20%), Positives = 139/380 (36%), Gaps = 40/380 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWH--DG 55 +L E Q++ K LR+ + F + YR +A + + Sbjct: 85 GCSLQHMSPEVQVSRKQAVLREQLAHFGGLEPEEWLAPLTGPVTGYRSKARMGVKYVEAK 144 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115 + +++ ++ + + E+ + R+++ QI+ D Sbjct: 145 GETLVGFREKRNSFIAQLHTCEVLIPDVGHRIDELRTLMHGLES-RSRIPQIELAAGDDD 203 Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175 A++ R LD L + L T + ++RL Sbjct: 204 VALII----RHLDPLSEADQQALLGFCQNLGWHCYLQPGNESTVHRIWPQEGEQRLYYKH 259 Query: 176 ----RTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARH 230 L + FTQ NA IN M+ L +L+L+CG GNF++ A+ Sbjct: 260 PSAGVELAFH--PTDFTQVNAEINRKMVPLALDLLDISPDHTVLDLFCGLGNFTIPAAKR 317 Query: 231 FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY 290 +V+ VE+++ VE N N + N++ + R+ Sbjct: 318 AGKVVGVEVSQAMVERGYENARRNSLENLEFHAWDLSQDVSGQAWARQ------------ 365 Query: 291 RFKTIFVDPPRSGLDDATVGMVQAYPH-----ILYISCNPDSLCRDLSILST-THTIERL 344 + I +DPPR+G + MV+ P I+Y+SCNP +L RD L + ++ Sbjct: 366 TYDRILIDPPRTG----ALEMVKLMPRLGASKIVYVSCNPATLARDAGELMALGYRLKAA 421 Query: 345 ALFDQFPYTRHMECGVLLVR 364 + D FP+T H+E + + Sbjct: 422 GVMDMFPHTTHVESIAVFEK 441 >gi|254361966|ref|ZP_04978097.1| tRNA (uracil-5-)-methyltransferase [Mannheimia haemolytica PHL213] gi|261493685|ref|ZP_05990204.1| 23S rRNA 5-methyluridine methyltransferase [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261494352|ref|ZP_05990846.1| 23S rRNA 5-methyluridine methyltransferase [Mannheimia haemolytica serotype A2 str. OVINE] gi|153093513|gb|EDN74493.1| tRNA (uracil-5-)-methyltransferase [Mannheimia haemolytica PHL213] gi|261310001|gb|EEY11210.1| 23S rRNA 5-methyluridine methyltransferase [Mannheimia haemolytica serotype A2 str. OVINE] gi|261310685|gb|EEY11869.1| 23S rRNA 5-methyluridine methyltransferase [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 439 Score = 221 bits (562), Expect = 2e-55, Method: Composition-based stats. Identities = 83/370 (22%), Positives = 143/370 (38%), Gaps = 29/370 (7%) Query: 2 SGTLL-IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFR---SEPIHYRMRAEFHIWHDGDD 57 G + E Q K L Q + Q + + HYR RA+ I Sbjct: 91 GGCQMQHISLELQRKAKQQALFQRLQKLQTHAIDVQPMIIGNDKHYRRRAKLSIAIQQGK 150 Query: 58 LYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQA 117 Q + + + + + + L+ ++ I + KL I+ +++ + A Sbjct: 151 AVIGFRLQNSNQIIPLAHCEVLVEPLANLLPKLKHLIENWQQPK-KLGHIELVSADNTIA 209 Query: 118 IVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRT 177 + + R L + LR + + ++ N + ER + Sbjct: 210 L----FFRHLGALSAQDNHNLRQFATQEQLSLFVMTSENHIEHLCG-----ERPYYQIQG 260 Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLA 236 L F Q NA +N M+E L Q +L+L+CG GNF+L +A V+ Sbjct: 261 LKLHFSIRDFIQVNATLNEKMVEKALEWLELSNQDRVLDLFCGMGNFTLPIAERAKSVVG 320 Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296 VE +P V+ AR N + + NV+ + + E D F + Sbjct: 321 VEGVEPMVQQARENAVTSGLKNVEFYQTNLDE------------PFSDKPWAKEPFNKVL 368 Query: 297 VDPPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTR 354 +DP R+G + P I+Y+SCNP +L RD +L + +E+ A+ D FP+T Sbjct: 369 LDPARNGALFCLDHLTSLNPERIVYVSCNPATLVRDAEKLLQLGYRLEKAAMIDMFPHTG 428 Query: 355 HMECGVLLVR 364 H+E L ++ Sbjct: 429 HLESISLFLK 438 >gi|125977774|ref|XP_001352920.1| GA17699 [Drosophila pseudoobscura pseudoobscura] gi|54641671|gb|EAL30421.1| GA17699 [Drosophila pseudoobscura pseudoobscura] Length = 631 Score = 221 bits (562), Expect = 2e-55, Method: Composition-based stats. Identities = 80/423 (18%), Positives = 158/423 (37%), Gaps = 66/423 (15%) Query: 3 GTLLIDQYEQQLAEKVDRLRQMMLAF----------QVPNL------QIFRSEPI-HYRM 45 L Y+ QL +K + + ++ + P+L ++ S + YR Sbjct: 158 CPLAGITYDDQLKQKSEEMSTLLKKYTQELRKINPQAKPHLDSFKFNEVLPSPTVNGYRN 217 Query: 46 RAEFHIWHDGDDLYHIMFDQQT--------KERMRIDYFMPGSLLINALMIEMMATIRLE 97 + EF + + + + F + E + + + +++ + + Sbjct: 218 KNEFTVGKNSEGEVVVGFRLGSYSDGSVEVAEVQDLPHLPDQAKWAAQSFQKLVRQSKFQ 277 Query: 98 PL--------LRAKLFQIDYLTSQSDQAIVTLIYHRLL-DDAWRECAIRLRDALHARKYQ 148 P R + + T + +V IY L +D +E L+ Q Sbjct: 278 PFNPDGNVGHFRQLMVRCSSATGE--LMLVAGIYSSNLSEDEQQELKQELKSFYEHASEQ 335 Query: 149 -----------IQLIGRANKTKICLDRDYVDER--LTVAGRTLIYRQIENSFTQPNAGIN 195 Q + ++ D++ +T + L +R +F Q N Sbjct: 336 DDATFKCTSLYYQDVKHREAGQMVNPVDHILGTTHITDTIQGLQFRISPLAFFQINTEGA 395 Query: 196 VHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAAN 254 + + + + +L++ CG G +L A+H RVL VEI +++ A++N AN Sbjct: 396 NVLYQQAIDLVAPTKDTTMLDICCGTGTIALAFAKHCKRVLGVEIVPDAIKDAQFNAEAN 455 Query: 255 HVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ- 313 + N K ++ +F ++M RE + + + VDPPR+GL + ++ ++ Sbjct: 456 GIKNCKFFTGNADDFIKSMVREAMYEQEPGKPVDL----IAVVDPPRAGLHNRSIAAIRS 511 Query: 314 --AYPHILYISCNPDSLCRDLSIL---------STTHTIERLALFDQFPYTRHMECGVLL 362 A ++Y+SCNP S R+ L + D FP+T H E +L Sbjct: 512 ASAINRLVYVSCNPHSAKRNFIELARPESKHYKGEPFYPKSAVAVDMFPHTTHTELVILF 571 Query: 363 VRK 365 R+ Sbjct: 572 ERE 574 >gi|328676686|gb|AEB27556.1| 23S rRNA (uracil-5-) -methyltransferase RumA [Francisella cf. novicida Fx1] Length = 449 Score = 220 bits (561), Expect = 2e-55, Method: Composition-based stats. Identities = 76/380 (20%), Positives = 153/380 (40%), Gaps = 35/380 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQV---PN---LQIFRSEPIHYRMRAEFHIWH-- 53 +L + Q+ K L + P + S YR +A + + Sbjct: 87 GCSLQHMSTDAQIEHKQQTLINQLKYIGNGVEPENILPPLRTSNTEGYRNKARLGVRYVS 146 Query: 54 DGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQ 113 + ++ + ID + + L+ + E+ + I + + + Q++ Sbjct: 147 KKGKILVGFRERNGRFLADIDKCIVLNPLVGDKITEISSFIETLSIYQH-IAQLEIAIDD 205 Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKT--KICLDRDYVDERL 171 + A++ R L+ E +LR Y I L + T ++ D ++L Sbjct: 206 TRSAMIV----RHLEPFTNEDLEKLRSFAQENNYWIYLQSKGPDTIFRLYPQGDVEPKKL 261 Query: 172 TVAGRTLI---YRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVL 227 + I + N FTQ N IN M++ + + D +++L+CG GNF+L + Sbjct: 262 SYQPAAGIDIGFE--PNDFTQVNNDINKKMIQRAIELLDISENDSIIDLFCGLGNFTLPI 319 Query: 228 ARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDI 287 ++H V+ VE V+ A+ A N++ NV + ++ + FN Sbjct: 320 SQHAKTVIGVEGEPTMVKRAKETAADNNIVNVNFY---AANLFESFEDKEWFN------- 369 Query: 288 HSYRFKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSIL--STTHTIERL 344 ++ + + +DPPR+G + + + I+Y+SC+ +L RD IL + + + Sbjct: 370 -NFEYNKMLLDPPRAGAQEVCNNIEKFNVKRIVYVSCDTATLARDAGILVNTKGYKLISA 428 Query: 345 ALFDQFPYTRHMECGVLLVR 364 + D FP+T H+E + + Sbjct: 429 GVMDMFPHTMHVESIAVFEK 448 >gi|261856076|ref|YP_003263359.1| RNA methyltransferase, TrmA family [Halothiobacillus neapolitanus c2] gi|261836545|gb|ACX96312.1| RNA methyltransferase, TrmA family [Halothiobacillus neapolitanus c2] Length = 442 Score = 220 bits (561), Expect = 2e-55, Method: Composition-based stats. Identities = 80/374 (21%), Positives = 139/374 (37%), Gaps = 28/374 (7%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSE----PIHYRMRAEFHIWH--DG 55 ++ E+QLA K L + + YR +A + + Sbjct: 83 GCSMQHLTSEKQLATKEQALLDQLQRIGKVSPATVLPALARANWGYRRKARLGVKYVQKK 142 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115 + ++ T + + + E+ I R ++ QI+ Sbjct: 143 GRVIVGFRERHTHFLSDLQNCRVLDPRVGERLTEIGEIIHSLEA-RERIPQIEVACGDDR 201 Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYV-DERLTVA 174 A+V R LD + +LR+ + I L +N + LD+ +V Sbjct: 202 VALV----FRNLDPLSQSDKEKLRNFGTQEGFDIYLQPGSNDSVHPLDKAHVAPLTYAHP 257 Query: 175 GRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDR 233 + F Q N +N M+ L GD +L+L+ G GNF+L +AR + Sbjct: 258 SFDVSIEFTPLDFIQINTDVNRAMIVQALEWLDVQPGDHVLDLFAGLGNFTLPIARKAAK 317 Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293 V AVE+ + V+ + AAN + N + V + F + Sbjct: 318 VTAVELDEHMVKRGAQSAAANGITNTEHVIGN------------LFEPDPTHLWMQQTYD 365 Query: 294 TIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSIL--STTHTIERLALFDQF 350 + +DPPR+G + + + A I+Y+SC+P SL RD IL + + + D F Sbjct: 366 RVLLDPPRAGAEAMMPHIARFAPERIVYVSCHPGSLARDAHILVREHGYRLIAAGVMDMF 425 Query: 351 PYTRHMECGVLLVR 364 P+T H+E + R Sbjct: 426 PHTSHIESMAVFER 439 >gi|313678801|ref|YP_004056541.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Mycoplasma bovis PG45] gi|312950249|gb|ADR24844.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Mycoplasma bovis PG45] Length = 440 Score = 220 bits (561), Expect = 2e-55, Method: Composition-based stats. Identities = 80/378 (21%), Positives = 148/378 (39%), Gaps = 31/378 (8%) Query: 2 SGTLLIDQ--YEQQLAEKVDRLRQMMLA--FQVPNLQIFRSE-PIHYRMRAEFHIWHDGD 56 SG+ + Y QL K + ++Q+ L I +S YR + + + Sbjct: 80 SGSAPLANISYNDQLEFKENFVKQLFKRNLHYSNILPILKSGYEWRYRNKLLLFTKNIQN 139 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEP---LLRAKLFQIDYLTSQ 113 + ++++ T + D + S +++ + I ++ L I S Sbjct: 140 IIKIGLYEKNTHNLIEQDSYDLVSEYSEKVLLWLSKNINDYDCFKNVKNSLISISIRESN 199 Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTV 173 ++ I+ D ++ + + ++ K Y+ E++ Sbjct: 200 FNKEIMLYFTASKSFDLSKQFFSDIASEFKNIVSILIIVNDKVVNKYLSQNTYLIEKVG- 258 Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFD 232 ++ NSF Q N+ ++ ++ + +++ YCG G SL LA+ Sbjct: 259 ---NFTFKYNWNSFFQINSEQTENLYSLLINNLSLDKNKTVIDAYCGIGTISLFLAQKSK 315 Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292 +V +EI +V A+ N +N +NNV + +K ID + Sbjct: 316 KVYGLEIVNEAVINAKENAISNDINNVDFIAGDV---------------IKSIDKIKEKV 360 Query: 293 KTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILST-THTIERLALFDQ 349 + VDPPRSGL D + + + I YISCNP ++CRD++ LS + I L D Sbjct: 361 DILVVDPPRSGLSDEFLSKILSIRPKEIGYISCNPHTMCRDINTLSKSGYEISYLRPCDM 420 Query: 350 FPYTRHMECGVLLVRKPS 367 F T H+E +L K + Sbjct: 421 FCQTYHIEVVAVLRLKEN 438 >gi|328954670|ref|YP_004372003.1| RNA methyltransferase, TrmA family [Coriobacterium glomerans PW2] gi|328454994|gb|AEB06188.1| RNA methyltransferase, TrmA family [Coriobacterium glomerans PW2] Length = 411 Score = 220 bits (561), Expect = 2e-55, Method: Composition-based stats. Identities = 82/405 (20%), Positives = 133/405 (32%), Gaps = 60/405 (14%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQV-------PNLQIFRS----------EPIHYR 44 L Y +QL K L ++ + P +R Sbjct: 18 GCAWLGIPYLKQLRRKHAALTELFEPLARRHEISICIDPVRGMGADSDSDTRILPPRGFR 77 Query: 45 MRAEFHIWHDG-DDLYHIMFDQQTKERMRIDYFM---PGSLLI--------NALMIEMMA 92 +A L F + T E + + + PG+ I + Sbjct: 78 FKAATPFAPGMCGSLRSGFFARGTHEIIESEDCIVEAPGARRILHAVAVAAERSGVSAYD 137 Query: 93 TIRLEPLLRAKLFQIDYLTSQSDQAIVT---LIYHRLLD-DAWRECAIRLRDALHARKYQ 148 R LR + ++ + + IVT I H D R+ R+R + Sbjct: 138 EDRRRGALRHAVVRLGRRSDEGMLTIVTSGREIAHLAAFVDRLRDIDPRVRTVAQNVNLR 197 Query: 149 IQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKG 208 ++T+I + + +RL + +F Q N + + Sbjct: 198 ATNAILGSETRILVGPPRMRDRLLECD----FEISPTAFFQTNPEQTEVLYRVAIEHMAL 253 Query: 209 IQGDL-LELYCGNGNFSLVLARHFD------RVLAVEIAKPSVEAARYNIAANHVN-NVK 260 GD+ L+ YCG+G L A H RV+ VE V AR N N ++ + Sbjct: 254 DDGDVVLDAYCGSGTIGLSCAAHMRASGRPIRVIGVERNPAGVRDARRNAEINGLDAMAR 313 Query: 261 IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHI 318 V + + R + +DPPR+G + A I Sbjct: 314 FVEQDATAYIAG------------AADAGDRVDVLVLDPPRAGASPELLAAAVRLAPRRI 361 Query: 319 LYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHMECGVLL 362 +YISCNP + RDL S+L + R+ D FP+T H+E +L Sbjct: 362 VYISCNPVTQARDLDSVLDAGFRLMRVTPVDMFPHTSHIETVAVL 406 >gi|113954400|ref|YP_730547.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Synechococcus sp. CC9311] gi|113881751|gb|ABI46709.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Synechococcus sp. CC9311] Length = 464 Score = 220 bits (561), Expect = 2e-55, Method: Composition-based stats. Identities = 87/391 (22%), Positives = 139/391 (35%), Gaps = 48/391 (12%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRS-----EPIHYRMRAEFHIWHDGD 56 +L + Q K RL Q + N+Q E + YR RA + D Sbjct: 87 GCSLQHLEESIQAEWKRSRLEQTLKRIGGINIQSPAPINNDLEHLGYRNRALIPLLRKED 146 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-----------LRAKLF 105 + + + + + + I+AL+ + + LR Sbjct: 147 QMRLGYYRRGSHRIVNLSRCPVLDPRIDALIKPLKQDLEGSGWPADADLHGELGLRHLGL 206 Query: 106 QIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161 ++ T + +V+ L + L W + + + T Sbjct: 207 RVGVRTGELLITLVSATAELNGMKDLAVEWMNRWPAVTGVTLNLQPRRSNTILGAITHTL 266 Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD---LLELYC 218 RD + ER L +F Q N ++ VL +GD L++ YC Sbjct: 267 AGRDCISERFC----NLQLLLGTTTFFQINTDRAEQIV-MVLRNWLLQRGDCKRLIDAYC 321 Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278 G G SL +A V+ +EI SV+ AR N A N + + K Sbjct: 322 GIGTISLPVAAAGIGVVGLEINPASVQQARQNAALNGLTDAKFEAGDVASLLS------- 374 Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSIL- 335 + L D D + VDPPR GL + + P + Y+SC+ +L RDL L Sbjct: 375 -DYLPDHDA-------LVVDPPRKGLASDVLDAILNCPPKRLAYLSCDSATLARDLKRLV 426 Query: 336 --STTHTIERLALFDQFPYTRHMECGVLLVR 364 + + I+R+ D FP T H+EC VL+ R Sbjct: 427 SDNGPYAIDRIQPVDFFPQTTHLECLVLMER 457 >gi|183600076|ref|ZP_02961569.1| hypothetical protein PROSTU_03609 [Providencia stuartii ATCC 25827] gi|188022362|gb|EDU60402.1| hypothetical protein PROSTU_03609 [Providencia stuartii ATCC 25827] Length = 443 Score = 220 bits (560), Expect = 3e-55, Method: Composition-based stats. Identities = 85/364 (23%), Positives = 147/364 (40%), Gaps = 28/364 (7%) Query: 13 QLAEKVDRLRQMML---AFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQT-- 67 Q K + L+ ++ Q I E YR RA + + + +M +QT Sbjct: 100 QRESKANALQHLIARETGVQKEAKPIIFGEAYGYRRRARLGLQYQNKSKHLLMGFRQTQS 159 Query: 68 KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLL 127 + I + L+ + + KL ++ + ++D +++ L+ H L Sbjct: 160 NTLVDIKQCPVLHHDLERLIQPLSDCLNQLKAAP-KLGHVELI--RADNSLIVLLRH--L 214 Query: 128 DDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSF 187 L+ + + L G + + L V VAG L + +F Sbjct: 215 VPLAPSDQQLLKSFEQQHEVCVWLAGDEH-SLHPLSASTVIPEYQVAGEMLQF--SPLNF 271 Query: 188 TQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246 Q N+ IN M+ L D +L+L+CG GNF+L +AR V+ VE + V+ Sbjct: 272 IQVNSDINQKMVAQALEWLDLHPHDRVLDLFCGMGNFTLPIARRVKAVVGVEGVENLVKQ 331 Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306 AR N N + N + + ++ + F + +DP R+G Sbjct: 332 ARNNAQRNSIGNATFYNENLEA------------QIHTQPWAAEGFNKVLLDPARAGAAG 379 Query: 307 ATVGMVQAYP-HILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 +V+ P I+Y+SCNP +L RD +L + + +L + D FP+T H+E VL + Sbjct: 380 VMEHLVKLMPEKIVYVSCNPTTLARDSKILLQAGYQLVQLRMLDMFPHTSHLESMVLFIN 439 Query: 365 KPSG 368 P G Sbjct: 440 SPEG 443 >gi|229591917|ref|YP_002874036.1| 23S rRNA 5-methyluridine methyltransferase [Pseudomonas fluorescens SBW25] gi|229363783|emb|CAY51209.1| 23s rRNA (uracil-5-)-methyltransferase [Pseudomonas fluorescens SBW25] Length = 450 Score = 220 bits (560), Expect = 3e-55, Method: Composition-based stats. Identities = 85/372 (22%), Positives = 142/372 (38%), Gaps = 32/372 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWHDGDD 57 ++ + +QLA K L + + Q YR RA + D Sbjct: 99 GCSVQHLPHAEQLALKQRMLAEQLSRVAGVEPQEWAAPLSGPEFGYRRRARVAVRWDAKA 158 Query: 58 LYHIMFDQQ--TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115 + + + +++ + ID + +M + +R +A L ++ + S Sbjct: 159 KHLAVGFRAVASQDIVAIDDCPVLVQALQPIMQRLPNMLRRLSKPQA-LGHVEVFSGTS- 216 Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDE-RLTVA 174 V L + L +A + QL +D D V RL Sbjct: 217 -IAVLLRHMAPLSEADLHILKEFCTF-----HDAQLWLHGEGQPEPVDADAVLGFRLEQW 270 Query: 175 GRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDR 233 L YR F Q NAG+N M+ L + +L+L+CG GNF+L LAR Sbjct: 271 DLELAYR--PGDFVQVNAGVNAAMVAQALEWLAPQPDERVLDLFCGLGNFALPLARQVRE 328 Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293 V+AVE + V+ A N +N+++N + + + L D + F Sbjct: 329 VVAVEGVQTMVDRAAVNAVSNNLHNAQFFQADLSQ------------PLTDAEWAKQGFS 376 Query: 294 TIFVDPPRSGLDDATVGMVQAY-PHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFP 351 + +DPPR G + + ++Y+SCNP +L RD L + ++R + D FP Sbjct: 377 AVLLDPPRDGALEVVRKLATLKAKRLVYVSCNPATLARDTVELVKQGYRLKRAGILDMFP 436 Query: 352 YTRHMECGVLLV 363 T H+E L Sbjct: 437 QTAHVEAMALFE 448 >gi|322831386|ref|YP_004211413.1| RNA methyltransferase, TrmA family [Rahnella sp. Y9602] gi|321166587|gb|ADW72286.1| RNA methyltransferase, TrmA family [Rahnella sp. Y9602] Length = 456 Score = 220 bits (560), Expect = 3e-55, Method: Composition-based stats. Identities = 71/357 (19%), Positives = 125/357 (35%), Gaps = 36/357 (10%) Query: 20 RLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDG-----------DDLYHIMFDQQTK 68 RL L + YR RA + G L + + Sbjct: 110 RLISRETGILADPLPVIAGPQYGYRRRARLGLQIAGVKPGRKAGAVSGPLVMGFRQEGSN 169 Query: 69 ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLD 128 + + I + L++ + + + +L ++ + + + +V R LD Sbjct: 170 DLVAITRCPVLRPELEQLLVPVQECLSSLSAAK-RLGHLEMVLADNGPLLVL----RHLD 224 Query: 129 DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFT 188 RL + I L + E L + F Sbjct: 225 PLSEADRARLTAFAAQHQLTIFLAPDSETLAPLCG-----EPPYYQIDGLNLKFGPRDFI 279 Query: 189 QPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA 247 Q N +N M+ L + D +L+L+CG GNF+L LA+ ++V+ VE V Sbjct: 280 QVNDAVNQQMVAQALDWLELTPEDRVLDLFCGMGNFTLPLAKRANQVVGVEGVATLVANG 339 Query: 248 RYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307 + N N + NV + ++ + + F I +DP R G Sbjct: 340 QDNARNNGLENVSFFHENLED------------DVSKQPWAAQGFNKILLDPARGGAAGV 387 Query: 308 TVGMVQAYP-HILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVLL 362 +V+ P ++Y+SCNP +L RD +L + + + + D FP+T H+E L Sbjct: 388 MTHIVKLAPARVVYVSCNPTTLARDSKILLEAGYRLAGVRMLDMFPHTGHLESMALF 444 >gi|302784258|ref|XP_002973901.1| hypothetical protein SELMODRAFT_100133 [Selaginella moellendorffii] gi|300158233|gb|EFJ24856.1| hypothetical protein SELMODRAFT_100133 [Selaginella moellendorffii] Length = 536 Score = 220 bits (560), Expect = 3e-55, Method: Composition-based stats. Identities = 84/418 (20%), Positives = 142/418 (33%), Gaps = 79/418 (18%) Query: 9 QYEQQLAEKVDRLRQMMLA---FQVPNL--------QIFR-SEPIHYRMRAEFHIWH--- 53 YE QLA K D++ Q++ F IF + HYR + EF Sbjct: 132 SYEAQLAAKEDQVHQLISRVGRFGRSEESGSGSYLKPIFPCANQYHYRNKMEFSFGTRWL 191 Query: 54 -------------DGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEM---------- 90 D + + + I + + N +++++ Sbjct: 192 PPNEFVKNQSPDIKEDFALGLHVPGSYDKILDIRECLLQHDVANQILLDVHTFCETHRND 251 Query: 91 ---MATIRLEPLLRAKLFQ--IDYLTS--QSDQAIVTLIYHRLLDDAWRECAI---RLRD 140 T LR + D T Q IVT ++H + E + + Sbjct: 252 LSAYDTKTHSGFLRHLTLRSGHDEHTGKLQVMVNIVTSVHHPRMIKPLIEKLVTYSEVTS 311 Query: 141 ALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLE 200 ++ + G K + + ERL R L++ NSF Q N + E Sbjct: 312 IVNNVTSSMANTGVGEKQYLLYGAPAITERL----RGLVFEISANSFFQTNTSQAEVLYE 367 Query: 201 WVLAATKGIQG----DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV 256 V A + ++L+L+CG G L +A + V E+ + +V AR N N++ Sbjct: 368 VVEKACNLTEASSEMNMLDLFCGTGTIGLSMANKVNHVYGYELVQEAVANARRNANRNNI 427 Query: 257 NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP 316 N ++ + T R I DP R G+ + + Sbjct: 428 LNATFIQGDLNKLTSGFGGNF------------PRPDIIITDPNRPGMHPKLLQFILKSG 475 Query: 317 --HILYISCNPDSLCRDLSILS---------TTHTIERLALFDQFPYTRHMECGVLLV 363 ++Y+SCNP + RDL +L + + + D FP+T H+EC L Sbjct: 476 AARVVYVSCNPATCARDLDVLCHSKDGSDLAGGYRLLSVQPIDMFPHTPHVECVCALE 533 >gi|254372579|ref|ZP_04988068.1| RNA methyltransferase [Francisella tularensis subsp. novicida GA99-3549] gi|151570306|gb|EDN35960.1| RNA methyltransferase [Francisella novicida GA99-3549] Length = 449 Score = 220 bits (560), Expect = 3e-55, Method: Composition-based stats. Identities = 76/380 (20%), Positives = 153/380 (40%), Gaps = 35/380 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQV---PN---LQIFRSEPIHYRMRAEFHIWH-- 53 +L + Q+ K L + P + S YR +A + + Sbjct: 87 GCSLQHMSTDAQIEHKQQTLINQLKYIGNGVEPENILPPLRTSNTEGYRNKARLGVRYVS 146 Query: 54 DGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQ 113 + ++ + ID + + L+ + E+ + I + + + Q++ Sbjct: 147 KKGKILVGFRERNGRFLADIDKCIVLNPLVGDKITEISSFIETLSIYQH-IAQLEIAIDD 205 Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKT--KICLDRDYVDERL 171 + A++ R L+ E +LR Y I L + T ++ D ++L Sbjct: 206 TRPAMIV----RHLEPFTNEDLEKLRSFAQENNYWIYLQSKGPDTIFRLYPQDDVEPKKL 261 Query: 172 TVAGRTLI---YRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVL 227 + I + N FTQ N IN M++ + + D +++L+CG GNF+L + Sbjct: 262 SYQPTAGIDIGFE--PNDFTQVNNDINKKMIKRAIELLDISENDSIIDLFCGLGNFTLPI 319 Query: 228 ARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDI 287 ++H V+ VE V+ A+ A N++ NV + ++ + FN Sbjct: 320 SQHAKTVIGVEGEPTMVKRAKETAADNNIVNVNFY---AANLFESFEDKEWFN------- 369 Query: 288 HSYRFKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSIL--STTHTIERL 344 ++ + + +DPPR+G + + + I+Y+SC+ +L RD IL + + + Sbjct: 370 -NFEYNKMLLDPPRAGAQEVCNNIEKFNVKRIVYVSCDTATLARDAGILVNTKGYKLISA 428 Query: 345 ALFDQFPYTRHMECGVLLVR 364 + D FP+T H+E + + Sbjct: 429 GVMDMFPHTMHVESIAVFEK 448 >gi|315231713|ref|YP_004072149.1| tRNA (Uracil54-C5-)-methyltransferase [Thermococcus barophilus MP] gi|315184741|gb|ADT84926.1| tRNA (Uracil54-C5-)-methyltransferase [Thermococcus barophilus MP] Length = 417 Score = 220 bits (560), Expect = 3e-55, Method: Composition-based stats. Identities = 83/375 (22%), Positives = 146/375 (38%), Gaps = 46/375 (12%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHI 61 L Y +Q+ K ++L ++ I + +R R + I +G Sbjct: 73 GCVLQHLPYSEQIKFKAEKLENLL---GYAVDVIPSPKIYGHRNRIDVVISTEGIGFRRR 129 Query: 62 MFDQQTKERMRIDYFMP-----------GSLLINALMIEMMATIRLEPLLRAKLFQIDYL 110 + I+ + I ++ + E +R + + Sbjct: 130 GTWWD---VVDIEKCIVFGEKSGRALKSLREFIEDFKLQPWNLRKSEGFMRYIVMREGKF 186 Query: 111 TSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDER 170 T + +VT Y L D +E + + K +R+++ ER Sbjct: 187 TGELMINLVT--YEGSLPDEVQEYFSFADSIYWSVNSSKSDVSYGEPRKF-WNREFIKER 243 Query: 171 LTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARH 230 L ++Y NSF Q N+ V++++ V +G + +L+LY G G F + LA+ Sbjct: 244 L----DDVVYLIHPNSFFQTNSYQAVNLVKKVAEFAEGKK--VLDLYSGVGTFGIYLAKK 297 Query: 231 FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY 290 V +EI +VE AR N N+V+ K K + Sbjct: 298 GFEVEGIEINPFAVEMARKNAEINNVD-AKFYVGEDKSV-----------------GNLG 339 Query: 291 RFKTIFVDPPRSGLDDATV-GMVQAYPHI-LYISCNPDSLCRDLSILSTTHTIERLALFD 348 ++ TI VDPPR+GL + M++ P I +Y+SCNP +L ++L L + + +E + D Sbjct: 340 KYDTIVVDPPRAGLHPKLIRKMLKDAPEIIVYVSCNPKTLAKNLEELKSIYKVEEIIGLD 399 Query: 349 QFPYTRHMECGVLLV 363 FP+T H+E L Sbjct: 400 MFPHTPHVEVVTKLK 414 >gi|312962346|ref|ZP_07776837.1| 23S rRNA (uracil-5-)-methyltransferase [Pseudomonas fluorescens WH6] gi|311283273|gb|EFQ61863.1| 23S rRNA (uracil-5-)-methyltransferase [Pseudomonas fluorescens WH6] Length = 450 Score = 220 bits (560), Expect = 3e-55, Method: Composition-based stats. Identities = 89/371 (23%), Positives = 148/371 (39%), Gaps = 30/371 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWHDGD- 56 ++ +++QLA K L + + Q + YR RA + D Sbjct: 99 GCSVQHLPHDEQLALKQRMLAEQLSRVAGVEPQEWAPPLSGPELGYRRRARVAVRWDAKA 158 Query: 57 -DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115 L +++ + ID + +M + +R +A L ++ + S Sbjct: 159 KKLEVGFRAVASQDIVAIDDCPVLVQALQPIMQRLPNMLRRLSKPQA-LGHVELFSGSS- 216 Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175 V L + L DA L++ + Q+ L G + D+ + RL Sbjct: 217 -IAVLLRHMAPLSDA---DLQVLQEFCAFHEAQLWLHGEGQPQPVEPDQ-ALGFRLEAWD 271 Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRV 234 L YR F Q NAG+N M+ L D +L+L+CG GNF+L LA+ V Sbjct: 272 LALAYR--PGDFVQVNAGVNEAMVTQALEWLAPQPDDRVLDLFCGLGNFALPLAKQVREV 329 Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294 +AVE + VE A N +N+++NV+ + + L D + F Sbjct: 330 VAVEGVQTMVERAALNAVSNNLDNVQFFQADLSQ------------PLTDAEWAKQGFSA 377 Query: 295 IFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPY 352 + +DPPR G + + ++Y+SCNP +L RD L + ++R + D FP Sbjct: 378 VLLDPPRDGAQEVVRKLATLGARRLVYVSCNPATLARDTVELVKQGYRLKRAGILDMFPQ 437 Query: 353 TRHMECGVLLV 363 T H+E L Sbjct: 438 TAHVEAMALFE 448 >gi|298492165|ref|YP_003722342.1| TrmA family RNA methyltransferase ['Nostoc azollae' 0708] gi|298234083|gb|ADI65219.1| RNA methyltransferase, TrmA family ['Nostoc azollae' 0708] Length = 455 Score = 220 bits (560), Expect = 4e-55, Method: Composition-based stats. Identities = 71/393 (18%), Positives = 144/393 (36%), Gaps = 52/393 (13%) Query: 2 SGTL---LIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWH 53 G + D Y QL K +++ Q + + + + YR + + + Sbjct: 83 GGCQWQHIDDDY--QLTAKQNQVIQALERIGRFANPPVDPVLVADSSLAYRNKVTYPLGI 140 Query: 54 DG-DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIE-----------MMATIRLEPLLR 101 + + + + + + ++ +N L+ E + R + +R Sbjct: 141 SPTGQVQAGYYQKGSHQLINLNQCPVQDSRLNPLLAEVKLDIQKRGWSIYDETRHQGSIR 200 Query: 102 AKLFQIDYLTSQSDQAIVTLIYHRLLDD----AWRECAIRLRDALHARKYQIQLIGRANK 157 +I T + +V + + W + L R + N+ Sbjct: 201 HLGLRIGRRTGEMLLTLVVKDKNLPGIETQAQEWLQRYPHLMGVCLNRNSDRTNVIFGNE 260 Query: 158 TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLE 215 T ++ E+ + ++ +F Q +L V+ + QG+ L++ Sbjct: 261 TVCIAGIPHLREKFA----DIEFQVRPETFFQVYTETAEALL-QVIQSELNFQGNEILVD 315 Query: 216 LYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275 YCG G +L LA+ +V+ +E+ +VE A +N N +NNV + + Sbjct: 316 AYCGIGTLTLPLAKQSHQVIGLEVQSAAVEQAIFNAQHNGINNVTFQVGAVE-------- 367 Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLS 333 K++ + +DPPR G + + + + I+Y++C +L RDL Sbjct: 368 -------KNLPNLGIIPDIVLLDPPRKGCEANVIKSLLSLKPSRIVYVTCKVATLSRDLK 420 Query: 334 ILSTT--HTIERLALFDQFPYTRHMECGVLLVR 364 +L + + R+ D FP T H+E LVR Sbjct: 421 LLCEHGLYKLTRVQPADFFPQTAHVESAAFLVR 453 >gi|254374038|ref|ZP_04989520.1| RNA methyltransferase [Francisella novicida GA99-3548] gi|151571758|gb|EDN37412.1| RNA methyltransferase [Francisella novicida GA99-3548] Length = 449 Score = 219 bits (559), Expect = 4e-55, Method: Composition-based stats. Identities = 76/380 (20%), Positives = 152/380 (40%), Gaps = 35/380 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQV---PN---LQIFRSEPIHYRMRAEFHIWH-- 53 +L + Q+ K L + P + S YR +A + + Sbjct: 87 GCSLQHMSTDAQIEHKQQTLINQLKYIGNGVEPENILPPLRTSNTEGYRNKARLGVRYVS 146 Query: 54 DGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQ 113 + ++ + ID + + L+ + E+ + I + + + Q++ Sbjct: 147 KKGKILVGFRERNGRFLADIDKCIVLNPLVGDKITEISSFIETLSIYQH-IAQLEIAIDD 205 Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKT--KICLDRDYVDERL 171 + A++ R L+ E RLR Y I L + T ++ D ++L Sbjct: 206 TRPAMIV----RHLEPFTNEDLERLRSFAQENNYWIYLQSKGPDTIFRLYPQDDVEPKKL 261 Query: 172 TVAGRTLI---YRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVL 227 + I + N FTQ N IN M++ + + D +++L+CG GNF+L + Sbjct: 262 SYQPAAGINIGFE--PNDFTQVNNDINKKMIKRAIELLDISENDSIIDLFCGLGNFTLPI 319 Query: 228 ARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDI 287 ++H V+ VE V+ A+ N++ NV + ++ + FN Sbjct: 320 SQHAKTVIGVEGEPTMVKRAKETADNNNITNVNFY---AANLFESFEDKEWFN------- 369 Query: 288 HSYRFKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSIL--STTHTIERL 344 ++ + + +DPPR+G + + + I+Y+SC+ +L RD IL + + + Sbjct: 370 -NFEYNKMLLDPPRAGAQEVCNNIEKFNVKRIVYVSCDTATLARDAGILVNTKGYKLISA 428 Query: 345 ALFDQFPYTRHMECGVLLVR 364 + D FP+T H+E + + Sbjct: 429 GVMDMFPHTMHVESIAVFEK 448 >gi|302771483|ref|XP_002969160.1| hypothetical protein SELMODRAFT_170457 [Selaginella moellendorffii] gi|300163665|gb|EFJ30276.1| hypothetical protein SELMODRAFT_170457 [Selaginella moellendorffii] Length = 536 Score = 219 bits (559), Expect = 4e-55, Method: Composition-based stats. Identities = 81/418 (19%), Positives = 141/418 (33%), Gaps = 79/418 (18%) Query: 9 QYEQQLAEKVDRLRQMMLAFQV------------PNLQIFRSEPIHYRMRAEFHIWH--- 53 YE QLA K D++ Q++ + + HYR + EF Sbjct: 132 SYEAQLAAKEDQVHQLISRVGRFGRSEESGSGSYLKPILPCANQYHYRNKMEFSFGTRWL 191 Query: 54 -------------DGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEM---------- 90 D + + + I + + N +++++ Sbjct: 192 PPNEFVKNQSPDIKEDFALGLHVPGSYDKILDIRECLLQHDVANQILLDVHTFCETHRND 251 Query: 91 ---MATIRLEPLLRAKLFQ--IDYLTS--QSDQAIVTLIYHRLLDDAWRECAI---RLRD 140 T LR + D T Q IVT ++H + E + + Sbjct: 252 LSAYDTKTHSGFLRHLTLRSGHDEHTGKLQVMVNIVTSVHHPRVIKPLIEKLVTYSEVTS 311 Query: 141 ALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLE 200 ++ + G K + + ERL R L++ NSF Q N + E Sbjct: 312 IVNNVTSSMANTGVGEKQYLLYGAPAITERL----RGLVFEISANSFFQTNTSQAEVLYE 367 Query: 201 WVLAATKGIQG----DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV 256 V A + ++L+L+CG G L +A + V E+ + +V AR N N++ Sbjct: 368 VVEKACNLTEASSEMNMLDLFCGTGTIGLSMANKVNHVYGYELVQEAVANARRNANRNNI 427 Query: 257 NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP 316 N ++ + T + R I DP R G+ + + Sbjct: 428 LNATFIQGDLNKLTSGF------------GANFPRPDIIIADPNRPGMHPKLLQFILKSG 475 Query: 317 --HILYISCNPDSLCRDLSILS---------TTHTIERLALFDQFPYTRHMECGVLLV 363 ++Y+SCNP + RDL +L + + + D FP+T H+EC L Sbjct: 476 AARVVYVSCNPATCARDLDVLCHSKDGSDLAGGYRLLSVQPIDMFPHTPHVECVCALE 533 >gi|290476632|ref|YP_003469537.1| 23S rRNA m5U1939 methyltransferase [Xenorhabdus bovienii SS-2004] gi|289175970|emb|CBJ82773.1| 23S rRNA m5U1939 methyltransferase [Xenorhabdus bovienii SS-2004] Length = 450 Score = 219 bits (559), Expect = 4e-55, Method: Composition-based stats. Identities = 77/368 (20%), Positives = 134/368 (36%), Gaps = 35/368 (9%) Query: 14 LAEKV-----DRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHD-------GDDLYHI 61 L K + L Q + I S YR R + +D L Sbjct: 99 LQAKTKASVLEHLIQRETGISISAHPIIHSPEYGYRRRVRLGLQYDVKKNPGRQQKLLMG 158 Query: 62 MFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTL 121 QT + + + + + L+ + + ++ +L ++ + + + +V Sbjct: 159 FRQSQTNDLVAVAHCPVMRPELEQLLQPLSQCLNSLSAVK-RLGHVELVLADNGPLMVL- 216 Query: 122 IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYR 181 R L E +LR K + L G + + L + Sbjct: 217 ---RHLAPLKHEDREKLRTFSVQHKAAVYLAGDEKILEPLTEGQTAP---WYQVDGLKLK 270 Query: 182 QIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIA 240 F Q N +N M+ LA D +L+L+CG GNF+L +A V+ VE Sbjct: 271 FSPWDFIQINDEVNQKMVVQALAWLDLQPTDRVLDLFCGMGNFTLPMATKAQTVVGVEGV 330 Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300 V +YN N +NNV + + + + F + +DP Sbjct: 331 AALVANGQYNAQLNELNNVDFFHENLE------------SDIHQQPWAVLGFNKVLLDPA 378 Query: 301 RSGLDDATVGMVQAYP-HILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMEC 358 R+G +V+ P ++Y+SCNP +L RD +L + + + + D FP+T H+E Sbjct: 379 RAGAAGVMSHIVKLAPERVVYVSCNPTTLARDSKILLEAGYHLVSVRMLDMFPHTGHLES 438 Query: 359 GVLLVRKP 366 L R+P Sbjct: 439 MALFSREP 446 >gi|208779007|ref|ZP_03246353.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Francisella novicida FTG] gi|208744807|gb|EDZ91105.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Francisella novicida FTG] Length = 449 Score = 219 bits (559), Expect = 4e-55, Method: Composition-based stats. Identities = 75/380 (19%), Positives = 152/380 (40%), Gaps = 35/380 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQV---PN---LQIFRSEPIHYRMRAEFHIWH-- 53 +L + Q+ K L + P + S YR +A + + Sbjct: 87 GCSLQHMSTDAQIEHKQQTLINQLKYIGNGVEPENILPPLRTSNTEGYRNKARLGVRYVS 146 Query: 54 DGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQ 113 + ++ + ID + + L+ + E+ + I + + + Q++ Sbjct: 147 KKGKILVGFRERNGRFLADIDKCIVLNPLVGDKITEISSFIETLSIYQH-IAQLEIAIDD 205 Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKT--KICLDRDYVDERL 171 + A++ R L+ E +LR Y I L + T ++ D ++L Sbjct: 206 TRPAMIV----RHLEPFTNEDLEKLRSFAQENNYWIYLQSKGPDTIFRLYPQGDVEPKKL 261 Query: 172 TVAGRTLI---YRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVL 227 + I + N FTQ N IN M++ + + D +++L+CG GNF+L + Sbjct: 262 SYQPAAGIDIGFE--PNDFTQVNNDINKKMIQRAIELLDISENDSIIDLFCGLGNFTLPI 319 Query: 228 ARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDI 287 ++H V+ VE V+ A+ N++ NV + ++ + FN Sbjct: 320 SQHAKTVIGVEGEPTMVKRAKETADNNNITNVNFY---AANLFESFEDKEWFN------- 369 Query: 288 HSYRFKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSIL--STTHTIERL 344 ++ + + +DPPR+G + + + I+Y+SC+ +L RD IL + + + Sbjct: 370 -NFEYNKMLLDPPRAGAQEVCNNIEKFNVKRIVYVSCDTATLARDAGILVNTKGYKLISA 428 Query: 345 ALFDQFPYTRHMECGVLLVR 364 + D FP+T H+E + + Sbjct: 429 GVMDMFPHTMHVESIAVFEK 448 >gi|308176099|ref|YP_003915505.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Arthrobacter arilaitensis Re117] gi|307743562|emb|CBT74534.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Arthrobacter arilaitensis Re117] Length = 376 Score = 219 bits (559), Expect = 4e-55, Method: Composition-based stats. Identities = 78/382 (20%), Positives = 137/382 (35%), Gaps = 34/382 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFR---SEPIHYRMRAEFHIWHDGDDL 58 S TL+ Y QQL KV+ ++++ F P+L+ S +R +A+ I D Sbjct: 13 SCTLMTVPYAQQLQSKVEDCKRLLADF--PDLEFLPAQASSEQGFRNKAKMVISGTTDKP 70 Query: 59 YHIMFDQQTKER------MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTS 112 + D + + + D LI + E+ P + +L + S Sbjct: 71 TIGILDAEGRGIDLRNCGVVADQLRAVFPLIERFIHELKLIPYDVPKRKGELKHVILTVS 130 Query: 113 QSDQAIVTLI-YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDER- 170 + +V + + A R+ + + L +K + + + + R Sbjct: 131 DTGSVMVRWVLRTKKHFVALRDSLPQFLEQLPRHSVVSVNFLPEHKAVLEGEEEIILTRR 190 Query: 171 --LTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVL 227 L + F Q N+ + + + + +LY G G F+L Sbjct: 191 TTLEFGLNGVPMHLRPQGFFQTNSEVAAALYRQARQWINDANPESVWDLYSGVGGFALHC 250 Query: 228 ARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDI 287 A V +E + +VEAA + A ++++ + EF Sbjct: 251 AAEDRTVYGIETSTEAVEAAETSAKAMELDDIHFKAQDATEFALG--------------- 295 Query: 288 HSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILSTTHTIERLA 345 + + + V+PPR G+ + I+Y SCN SL RDL L +T Sbjct: 296 AGWAPEAVIVNPPRRGITADLSTWLNGSDVQQIIYSSCNAKSLARDLERLEN-YTPTLAR 354 Query: 346 LFDQFPYTRHMECGVLLVRKPS 367 + D FP T H E V L RK + Sbjct: 355 VMDMFPQTNHYEVIVKLERKAA 376 >gi|119471910|ref|ZP_01614218.1| 23S rRNA (uracil-5)-methyltransferase [Alteromonadales bacterium TW-7] gi|119445283|gb|EAW26573.1| 23S rRNA (uracil-5)-methyltransferase [Alteromonadales bacterium TW-7] Length = 441 Score = 219 bits (559), Expect = 4e-55, Method: Composition-based stats. Identities = 81/373 (21%), Positives = 141/373 (37%), Gaps = 29/373 (7%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAF----QVPNLQIFRSEPIHYRMRAEFHIWHDG-- 55 L QQ+ EK + Q+ F + S HYR A + D Sbjct: 89 GCQLQHLDVNQQVVEKQAAVEQLFEKFAKQTNLNWQAPLLSSSTHYRRSARIAVMFDKAA 148 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115 + +K + I+ + + I L + L Sbjct: 149 KKMRIGYRASGSKNIVSINKCAVLTDAYETVFTLFDELINHNKSLHS--ISHLQLCQSET 206 Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175 V + + + + D + I+ + T I + Y+DE Sbjct: 207 HNFVVIRHTKAISDEAKAVVIKACTPYKYSVIWQSESDVIDHTNITMPYYYLDE------ 260 Query: 176 RTLIYRQIENSFTQPNAGINVHMLEW-VLAATKGIQGDLLELYCGNGNFSLVLARHFDRV 234 L + ++F Q NA +N ML+ V ++L+L+CG GNFSLVLA+ V Sbjct: 261 FKLKFGFGLDNFIQVNAQVNQAMLKQSVDWLGLSGNENILDLFCGIGNFSLVLAKQAKTV 320 Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294 + +E +V A N N ++N + TQ ++ + FN+ Sbjct: 321 IGIEGVASAVAMAEQNAQTNSISNAQFHCFD---LTQKIQNAQWFNK---------NLDV 368 Query: 295 IFVDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDLSILST-THTIERLALFDQFPY 352 + +DP R+G + ++ + ILY+SC+P +L RD +I+S + ++ L + FP+ Sbjct: 369 LVLDPSRTGAMAILEQLPLKQFKTILYVSCDPVTLARDSAIISQAGFELNKIGLMNMFPH 428 Query: 353 TRHMECGVLLVRK 365 T H+E L R+ Sbjct: 429 TGHIETMALFQRR 441 >gi|226328919|ref|ZP_03804437.1| hypothetical protein PROPEN_02821 [Proteus penneri ATCC 35198] gi|225202105|gb|EEG84459.1| hypothetical protein PROPEN_02821 [Proteus penneri ATCC 35198] Length = 441 Score = 219 bits (559), Expect = 4e-55, Method: Composition-based stats. Identities = 72/336 (21%), Positives = 128/336 (38%), Gaps = 24/336 (7%) Query: 34 QIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ-QTKERMRIDYFMPGSLLINALMIEMMA 92 + YR RA + + + + F Q ++ + + I +N L+ + Sbjct: 126 PVIAGAEYGYRRRARLGLRYQSEKGLVMGFRQERSNDLVMIKKCPVLKPQLNDLLSPLWT 185 Query: 93 TIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLI 152 + R L ++ + + + +++ R L LRD + + L Sbjct: 186 CLNKLTSARD-LGHVEMVLADNGPSVIL----RHLSPLSEHDKQSLRDFSQTYQVTMYLA 240 Query: 153 GRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD 212 G ++ +++ L R F Q N IN M+ + D Sbjct: 241 GGNSEIARLTS---IEQEPFYQIEGLNLRFAPTDFIQVNDEINSQMVAQAIEWLDLSPED 297 Query: 213 -LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271 +L+L+CG GNF+L +A+ V+ +E VE A+ N N + N Sbjct: 298 RVLDLFCGMGNFTLPIAKRVSEVVGIEGVPALVEMAKKNAKLNQLGNAHFWHADLSADFS 357 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY-PHILYISCNPDSLCR 330 AM +E F + +DP R+G + +V+ I+Y+SCNP +L R Sbjct: 358 AMSWSKE------------GFNKVLLDPARAGALEVMSHIVKLSAEKIVYVSCNPTTLAR 405 Query: 331 DLS-ILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 D +L + + + L + D FP T H+E RK Sbjct: 406 DSKILLDSGYQLTGLKMLDMFPQTGHLESMAQFSRK 441 >gi|262404764|ref|ZP_06081319.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Vibrio sp. RC586] gi|262349796|gb|EEY98934.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Vibrio sp. RC586] Length = 440 Score = 219 bits (559), Expect = 5e-55, Method: Composition-based stats. Identities = 87/372 (23%), Positives = 153/372 (41%), Gaps = 30/372 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFR---SEPIHYRMRAEFHIWHDGD-- 56 L Q+ K L Q+M+ F +L + S+ YR RA + D Sbjct: 90 GCDLQHLDRAGQINHKQQALSQLMVKFAGQSLALSAPVCSDDQGYRRRARLSLMWDKKTQ 149 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116 L +Q+K + + + +NAL+ E+ T+ + +L ++ + + + Sbjct: 150 QLQFGFRRKQSKAIVNVTHCPVLEPSLNALLPEL-NTLLSQWCQPEQLGHVELVKGDNAR 208 Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGR 176 + R + + RL D + + L A + E G Sbjct: 209 VLAL----RHVGALTEQDQQRLTDFASQNQLTLYLALEAGTLQHVQGEPPYCEE---TGS 261 Query: 177 TLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVL 235 L + + + F Q N +N M+E L Q +L+L+CG GNF+L LA+ V+ Sbjct: 262 RLSF--LPSHFIQVNRAVNQKMVEQALHWLEVSEQDRVLDLFCGLGNFTLPLAKQAQEVV 319 Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295 VE + V+ A +N N +NNV + + ++ + +F + Sbjct: 320 GVEGVEEMVQHATHNAKLNQINNVTFYQANLEQ------------DMTTASWAQQKFAKV 367 Query: 296 FVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYT 353 +DP R+G + + ++Y+SCNP +L RD S+LS +E+L + D FP+T Sbjct: 368 LLDPARAGAEGIVEQLAALGAERVVYVSCNPATLARDSQSLLSQGFCLEKLGMLDMFPHT 427 Query: 354 RHMECGVLLVRK 365 H+E L V+K Sbjct: 428 SHLESMALFVKK 439 >gi|238758179|ref|ZP_04619358.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Yersinia aldovae ATCC 35236] gi|238703509|gb|EEP96047.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Yersinia aldovae ATCC 35236] Length = 425 Score = 219 bits (559), Expect = 5e-55, Method: Composition-based stats. Identities = 73/365 (20%), Positives = 139/365 (38%), Gaps = 32/365 (8%) Query: 12 QQLAE--KVDRLRQMMLAFQVPNL---QIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66 QL K D L +++ ++ + YR RA + + M + Sbjct: 79 AQLQRNSKADALTRLVARETGAHVKLEPVICGPEYGYRRRARLALMYQPKQQRLQMGFHR 138 Query: 67 T--KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 T + I + + L+ + + +R +L ++ + + + +V Sbjct: 139 TESHNVVSIKHCPVLRPELEHLLQPLYQCLSELKAVR-RLGHVELVLADNGPLLVL---- 193 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 R LD L + + + L ++ + + D L Sbjct: 194 RHLDTLNEVDRKALTEFAKREQIAVYLAANSDSLEKLIGEDP-----YYQIDGLRLAFHP 248 Query: 185 NSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 F Q N +N M+ V+ +L+L+CG GNF+L LAR V+ VE Sbjct: 249 RDFIQVNDVVNQQMVAQVIEWLEVEPHERVLDLFCGMGNFTLPLARRARNVVGVEGVAAL 308 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 V +YN N + NV + + + + + F + +DP R+G Sbjct: 309 VANGQYNALTNGLANVSFFHENLE------------SDISRQPWAAQGFDKVLLDPARAG 356 Query: 304 LDDATVGMVQAYP-HILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVL 361 +V+ P ++Y+SCNP +L RD +L+ + + ++ + D FP+T H+E L Sbjct: 357 AAGVMSHIVKLAPKRVVYVSCNPTTLARDSQVLLAAGYRLAQVRMLDMFPHTGHLESMAL 416 Query: 362 LVRKP 366 +++P Sbjct: 417 FMQEP 421 >gi|14590965|ref|NP_143040.1| RNA methyltransferase [Pyrococcus horikoshii OT3] gi|50401321|sp|O58864|Y1137_PYRHO RecName: Full=Uncharacterized RNA methyltransferase PH1137 gi|3257554|dbj|BAA30237.1| 407aa long hypothetical RNA methyltransferase [Pyrococcus horikoshii OT3] Length = 407 Score = 219 bits (558), Expect = 5e-55, Method: Composition-based stats. Identities = 80/380 (21%), Positives = 150/380 (39%), Gaps = 62/380 (16%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEP-IHYRMRAEFHIWHDGDDLYH 60 +L Y+ QL K +R+R+++ ++++ S +R R + + +G Sbjct: 69 GCSLQHLSYDYQLEFKGERIRRLLG----VDVEVIPSPRIFGHRNRIDLAVTVEG----- 119 Query: 61 IMFDQQTK--ERMRIDYFMP-----------GSLLINALMIEMMATIRLEPLLRAKLFQI 107 I F ++ K + + I I I + + E LR + + Sbjct: 120 IGFRERGKWWKIVDIQECPVFGKTSRKAIERLREFIEEERISVWNVKKDEGFLRYMVLRE 179 Query: 108 DYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRA---NKTKICLDR 164 T + +VT + + D + + + + + R Sbjct: 180 GKFTGEVMVNLVT-------KEGKLPDPSKYFDFATSIYWSVNRTKSDVSYGEVESVWGR 232 Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFS 224 +++ E+L +IY NSF Q N+ V++++ V +G +L++Y G G F Sbjct: 233 EFITEKL----DDVIYLIHPNSFFQTNSYQAVNLVKKVSELVEGE--RVLDMYSGVGTFG 286 Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284 + LA+ +V+ + + ++E AR N N V+ V F+ D Sbjct: 287 IYLAKRGFKVVGFDSNEFAIEMARKNAKINKVDAV-------------------FDVATD 327 Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLSILSTTHTIE 342 ++ F T+ VDPPR GL + + I+Y+SCNP + RD+ L + I+ Sbjct: 328 REVEVNGFDTVIVDPPRVGLHPKLIKKLNREKPEVIVYVSCNPKTFARDIEKLE--YKID 385 Query: 343 RLALFDQFPYTRHMECGVLL 362 + D FP+T H+E L Sbjct: 386 EIVALDMFPHTPHLELVAKL 405 >gi|221632250|ref|YP_002521471.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Thermomicrobium roseum DSM 5159] gi|221157158|gb|ACM06285.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Thermomicrobium roseum DSM 5159] Length = 406 Score = 219 bits (558), Expect = 5e-55, Method: Composition-based stats. Identities = 71/371 (19%), Positives = 130/371 (35%), Gaps = 67/371 (18%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMML---AFQVPN--LQIFRSEPIHYRMRAEFHIWHDGD 56 +YE QL K +RQ + F P + +P YR A F + G+ Sbjct: 88 GCQWQHIRYEYQLVLKQAVVRQQLRRIGKFDDPPVLPTVPSPQPYGYRNHARFSVDGKGN 147 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116 Y +RID + IN ++ + ++ + + T + Sbjct: 148 LGYISRPGHGY-RFLRIDRCLIMHPAINEVLRRLQERAHVK---HQLMVRYGVNTGE--- 200 Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGR 176 ++ +D I + E L Sbjct: 201 -LLVHPDVSAIDP-----------------------------TIPSGQPAYHESLL---- 226 Query: 177 TLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFSLVLARHFDRVL 235 +R +SF Q N + +++ VL +++ + Y G G F+ LA RV+ Sbjct: 227 GHRFRISASSFFQTNTAVAERLIQLVLERIAPTGNEVVVDAYAGVGTFAAFLAPRVARVI 286 Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295 +E + +V A+ N+ + +NV+ V+ + + + R + Sbjct: 287 GIEESPSAVSDAQVNL--DPFDNVEYVQAKVEHVLGKL---------------AVRPDVV 329 Query: 296 FVDPPRSGLDDATVG--MVQAYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPY 352 +DPPR G + ++ P ++Y+SC+P +L RDL L + + + D FP Sbjct: 330 ILDPPRVGCAPEALTGVLMLRPPRLIYVSCDPATLARDLRKLVDGGYRLLDVTPLDMFPQ 389 Query: 353 TRHMECGVLLV 363 T H+E L Sbjct: 390 TYHIESVATLE 400 >gi|304399230|ref|ZP_07381097.1| RNA methyltransferase, TrmA family [Pantoea sp. aB] gi|304353284|gb|EFM17664.1| RNA methyltransferase, TrmA family [Pantoea sp. aB] Length = 438 Score = 219 bits (558), Expect = 6e-55, Method: Composition-based stats. Identities = 87/368 (23%), Positives = 158/368 (42%), Gaps = 46/368 (12%) Query: 13 QLAEKVDRLRQMM---LAFQVPNLQIFRSEPIHYRMRAEFHI-WHDGDDLYHIMFDQQ-T 67 Q K L +M+ + V ++ +P YR RA + W + + F Q+ + Sbjct: 100 QQQSKAQALSRMLSQAASQSVAVDEVIAGQPWGYRRRARLGLQWQNKAQRLQMGFRQEAS 159 Query: 68 KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLL 127 + + I + + AL++ + + +R +L ++ + + + ++ Sbjct: 160 NDLVDIQHCPVLVPELEALLVPLHQCLSDLRAVR-RLGHVELVLADNGPLMI-------- 210 Query: 128 DDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQI---- 183 +R DALH + +L ++K ++ L D DE LT ++ + Sbjct: 211 --------LRHLDALHTDDRE-KLEQFSHKHQLMLFLDAGDENLTALSESMPFYHSHQLK 261 Query: 184 ----ENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVE 238 F Q N G+N M+ +A D +L+L+CG GNF+L + V+ VE Sbjct: 262 LTFNPQDFIQVNDGVNQQMVAKAIAWLDLQPEDRVLDLFCGMGNFTLPVGIFVQNVVGVE 321 Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298 V A YN N++ NV + + +E + + F + +D Sbjct: 322 GIAALVRQAAYNADLNNLKNVSFFQHNLEE------------EVSRQPWATQGFNKVLLD 369 Query: 299 PPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHM 356 P R+G +V+ P ++Y+SCNP +L RD +LS + +ER+A+ D FP+TRH+ Sbjct: 370 PARAGAAGVMAHVVKLAPERVVYVSCNPTTLARDSQILLSAGYQLERVAMLDMFPHTRHL 429 Query: 357 ECGVLLVR 364 E VL + Sbjct: 430 ESMVLFRK 437 >gi|83719402|ref|YP_442750.1| 23S rRNA 5-methyluridine methyltransferase [Burkholderia thailandensis E264] gi|83653227|gb|ABC37290.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia thailandensis E264] Length = 498 Score = 219 bits (557), Expect = 7e-55, Method: Composition-based stats. Identities = 79/380 (20%), Positives = 136/380 (35%), Gaps = 33/380 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWH--DG 55 ++ Q+A K L + + YR RA + H Sbjct: 134 GCSMQHLDMRAQVAIKQRVLEDNLWHLAKLRAEAMFAPIHGPSWGYRYRARLTVRHVAKK 193 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115 + ++++ + ++A+++ + + +R ++ QI+ Sbjct: 194 GGVLVGFHEKKSSYVADMTSCEVLPPHVSAMLVPLRRLVEQL-SIRDRMPQIELAVGSQV 252 Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175 A+V R+L+ LR+ A + Q L + T V T+ Sbjct: 253 TALVL----RVLEPINAADETLLREFADAHRVQFWLQPKGPDTVAPFYPLDVQLDYTLPE 308 Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRV 234 + FTQ N IN ++ L +GD +L+L+CG GNF+L LAR V Sbjct: 309 FGIRMPFKPTDFTQVNHQINRVLVGRALRLLAPERGDRVLDLFCGIGNFTLPLARLAREV 368 Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294 + +E ++ A N N V+ + F D F Sbjct: 369 VGIEGSETLTSRALANAKENGVDGHT-----------SFASRNLFEVTADDLHALGAFDK 417 Query: 295 IFVDPPRSGL---DDATVGMVQAYP-----HILYISCNPDSLCRDLSIL--STTHTIERL 344 VDPPR G A + Q+ I+Y+SCNP +L RD +L + ++ Sbjct: 418 FLVDPPREGALAVSKALAEIAQSGEGPLPARIVYVSCNPSTLARDAGLLVHEAGYRLKGA 477 Query: 345 ALFDQFPYTRHMECGVLLVR 364 + + FP+T H+E L R Sbjct: 478 GVVNMFPHTSHVESIALFER 497 >gi|309774722|ref|ZP_07669745.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Erysipelotrichaceae bacterium 3_1_53] gi|308917495|gb|EFP63212.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Erysipelotrichaceae bacterium 3_1_53] Length = 436 Score = 219 bits (557), Expect = 7e-55, Method: Composition-based stats. Identities = 77/380 (20%), Positives = 149/380 (39%), Gaps = 34/380 (8%) Query: 3 GTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL----QIFRSEP-IHYRMRAEFHIWHDGDD 57 L+I +Y QL K D L+Q ++ + + ++ SE YR + + + Sbjct: 74 CPLMIARYPAQLEYKQDLLKQSLIKYAQIDPRKVAKVKASEQVFGYRNQFKLPCAMEEGR 133 Query: 58 LYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRL------EPLLRAKLFQIDYLT 111 L +F + + + + + +++M + +P + + + Sbjct: 134 LVSGLFMPNSNYFIDVKRCWIHEDGLERIRMDIMRVLNAHGCESYQPHDKKGIRNLVVRG 193 Query: 112 SQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYV---- 167 + + + L+++ +R++ Q I KT + Sbjct: 194 FEGRYQCTIVTGNDELNESLIADLMRIKGVC----SLWQSIHTVKKTPEVFGNKMIHLAG 249 Query: 168 DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVL 227 D L + L + SF Q N+ V + + + K ++E Y G G SL L Sbjct: 250 DTSLALTFDGLQLQISPRSFFQLNSAQAVQLYRTIASMVKEGNELIVEAYSGIGAISLYL 309 Query: 228 ARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDI 287 ++ +E K +V A N N +V + + + ++R Sbjct: 310 KDKAKEIIGIESIKDAVVNANQNAKLNGCGHVSFLCDDAASKLTYLSKKRAI-------- 361 Query: 288 HSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILSTTHTIERLA 345 + VDPPRSGLDDA + + +I+Y+SCNP +L ++L++L + +E++ Sbjct: 362 -----DVLVVDPPRSGLDDAMLDCILRSKIKNIVYVSCNPATLGKNLAVLGYRYNVEKIQ 416 Query: 346 LFDQFPYTRHMECGVLLVRK 365 D FP+T ++E V L RK Sbjct: 417 PIDMFPHTPYVEAVVSLKRK 436 >gi|242398439|ref|YP_002993863.1| 23S rRNA (Uracil-5-)-methyltransferase [Thermococcus sibiricus MM 739] gi|242264832|gb|ACS89514.1| 23S rRNA (Uracil-5-)-methyltransferase [Thermococcus sibiricus MM 739] Length = 419 Score = 219 bits (557), Expect = 7e-55, Method: Composition-based stats. Identities = 81/376 (21%), Positives = 140/376 (37%), Gaps = 42/376 (11%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIH-YRMRAEFHIWHDGDDLYH 60 L YE+QL K +L +++ N+++ S I+ YR R + I G Sbjct: 73 GCLLQHIPYEEQLKFKEQKLSELLE----MNVEVLPSPKIYDYRNRIDVAITTGGIGFRR 128 Query: 61 IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL--------LRAKLFQIDYLTS 112 + F S + +++ + L P LR + + T Sbjct: 129 RGTWWDVIDVKNCRIFGDKSEKALRSVKDLIEDLNLVPWDLKKSNGFLRYVVLREGKFTG 188 Query: 113 QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLT 172 + +VT L E + + + +++ E++ Sbjct: 189 EFMVNLVT--SEGTLSKEVTEYFDFATSLYWSVNSTKSDVSYGAP-RRFWGAEFIREKI- 244 Query: 173 VAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD 232 + Y NSF Q N+ V++++ V +G + +L+LY G G F + LAR Sbjct: 245 ---DDVTYLIHPNSFFQTNSYQAVNLVKKVGDFVEGEK--VLDLYSGVGTFGIYLARRGF 299 Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292 +V +E+ +VE A N N V N + +E + Sbjct: 300 KVEGIEVNPFAVEMANRNARINEV-NAEFKVGEDREVRDL-----------------GVY 341 Query: 293 KTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLSILSTTHTIERLALFDQF 350 T+ VDPPR+GL + + P ++Y+SCNP + +L L + IE + D F Sbjct: 342 DTLIVDPPRAGLHPKLIKKLLKDPPETLVYVSCNPRTFSENLKKLKEGYAIEEIVALDMF 401 Query: 351 PYTRHMECGVLLVRKP 366 P+T H+E L K Sbjct: 402 PHTPHIEIVAKLDLKN 417 >gi|195953997|ref|YP_002122287.1| RNA methyltransferase, TrmA family [Hydrogenobaculum sp. Y04AAS1] gi|195933609|gb|ACG58309.1| RNA methyltransferase, TrmA family [Hydrogenobaculum sp. Y04AAS1] Length = 415 Score = 219 bits (557), Expect = 7e-55, Method: Composition-based stats. Identities = 88/373 (23%), Positives = 148/373 (39%), Gaps = 43/373 (11%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWHDGDD 57 Y +QL +K + L++ + ++ I EP HYR R +F + + Sbjct: 73 GCHFQHIDYTEQLTQKSNILKETLKKIGNIEIENLNGIIYDEPYHYRNRVKFKVRNKELG 132 Query: 58 LYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMA-TIRLEPLLRAKLFQIDYLTSQSDQ 116 + D +++++ S IN LM + P + + + + Sbjct: 133 FVGVDEDF-----VKVEHCPISSKAINDLMPFLKEFAKHFNPSWISVFY-----SDTQKE 182 Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANK--TKICL--DRDYVDERLT 172 +V + +D +E + ++ L + + + +K KI L + L Sbjct: 183 YMVKFASYDYID---KEKLKKFKEHLTPKNVVGITLVKDDKREDKIILSIGTPFTFIELL 239 Query: 173 VAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD 232 + YR NSF Q N + +L+ +L +L+ Y G G F L LAR Sbjct: 240 ----KIKYRISVNSFFQVNIKVAQKLLQTLLEKENYFD-RVLDDYGGVGLFGLHLARRSG 294 Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292 V +I K S+ A Y+ N++NNV +S F + + Sbjct: 295 SVDIADINKSSINDAEYSAKINNINNVSFYVQNSYVFLKKSLYK--------------HA 340 Query: 293 KTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLSILSTTHTIERLALFDQF 350 + +DPPRSGL +G++ I YISC P SL RDL +L + I+ + + D F Sbjct: 341 NLLVLDPPRSGLSKEEIGLILLGKPDYIWYISCEPSSLARDLKLLGKKYQIKEIYMADMF 400 Query: 351 PYTRHMECGVLLV 363 P T H+E V L Sbjct: 401 PQTYHIETAVKLE 413 >gi|261856300|ref|YP_003263583.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Halothiobacillus neapolitanus c2] gi|261836769|gb|ACX96536.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Halothiobacillus neapolitanus c2] Length = 379 Score = 219 bits (557), Expect = 7e-55, Method: Composition-based stats. Identities = 87/392 (22%), Positives = 144/392 (36%), Gaps = 56/392 (14%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHI 61 S L D Y QL K+ R + + L I S +R +A+ + D Sbjct: 13 SCGWLADPYADQLQRKMARCQSALTGLGGVWLPIVPSAETAFRNKAKMVVCGDASSPCLG 72 Query: 62 MFDQQTKERMRIDYFM-----------PGSLLINALMIEMMATIRLEPLLRAKLFQIDYL 110 + D + + + P +I L I + + L+ L + Sbjct: 73 ILDADD-DGIDLSNCPLYPTAITEAFEPLKQMIRRLGIPPYDVKKRQGELKYLLITV--- 128 Query: 111 TSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHA--------------RKYQIQLIGRAN 156 S+ D +++ + R D W E RLR L + Q I Sbjct: 129 -SEDDDSLMVRLVLR--SDIWIE---RLRADLSTLTADLPHLAVLSVNIQPVHQAILEGE 182 Query: 157 KTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG-DLLE 215 + I DR E LTV L + SF Q N + + + + + + Sbjct: 183 QEVILTDR----ETLTVHLNGLPFHLRPKSFFQTNTRVAEQLYATARSWVAEVAPVHMWD 238 Query: 216 LYCGNGNFSLVLARHF-DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274 L+CG G F+L A +V +EI+ ++ +A+ + + NV + + EF Sbjct: 239 LFCGVGGFALHCADVIPGQVTGIEISAEAIASAQQSALELGLKNVSFHALGANEFIDQAV 298 Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDL 332 + L + V+PPR GL + ++Y SCNP+SL RDL Sbjct: 299 SLPQMPAL------------VVVNPPRRGLGVGLCAFLDESVVQTVIYSSCNPESLARDL 346 Query: 333 SILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 ++ + + +FD FP+T H E +LVR Sbjct: 347 VMM-PGFELVKAQVFDLFPHTAHSEVLAMLVR 377 >gi|91792550|ref|YP_562201.1| 23S rRNA 5-methyluridine methyltransferase [Shewanella denitrificans OS217] gi|123166314|sp|Q12PZ8|RUMA_SHEDO RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|91714552|gb|ABE54478.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Shewanella denitrificans OS217] Length = 468 Score = 219 bits (557), Expect = 8e-55, Method: Composition-based stats. Identities = 87/394 (22%), Positives = 159/394 (40%), Gaps = 51/394 (12%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ---VPNLQI----FRSEPIHYRMRAEFHIWHD 54 L + Q K L ++M+ F V + Q+ S P HYR RA + + Sbjct: 91 GCDLQHLALDAQQNHKQQSLNELMVKFSGSPVIDPQVQAAPLVSPPWHYRRRARLATYFN 150 Query: 55 GDDLYH--IMFDQQTKERMRIDYFM----PGSLLINALMIEMMATIRLEPLLRAKLFQID 108 +D +K+ + I P S LIN + + L +L Q D Sbjct: 151 NNDKSLKLGFRALSSKQIVPIKQCPVLAEPLSALINPFSLLLARLKAKASLGHLELTQAD 210 Query: 109 YLT-----------SQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANK 157 T + +A+ + + ++ ++ + L D + + + + + Sbjct: 211 NGTFAVLRVTKVLPAADIRALASFALTQGINLLLQDDSGALTDVMTMAPAEDEGATQVEQ 270 Query: 158 TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLEL 216 + + L + L+ + + +F Q NA +N M+E + G+ +L+L Sbjct: 271 SALTLP----EYALSQGQVSCQF--TPGNFVQVNAEVNQRMVEQAVNWLDLQVGERVLDL 324 Query: 217 YCGNGNFSLVLARHFD-----RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271 +CG GNFSL LA V+ VE V+ AR N N++ N+ + Sbjct: 325 FCGVGNFSLALANRGQNLDGLEVIGVEGVPEMVQQARENAKRNNLANLSFYHAD---LSA 381 Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH-ILYISCNPDSLCR 330 + E+ ++ + +DP R+G ++ + + P ++Y+SCNP SL R Sbjct: 382 DLSNEKWLGKI----------DKLLLDPARAGAFESLQWLQKMKPKKVVYVSCNPASLAR 431 Query: 331 DLS-ILSTTHTIERLALFDQFPYTRHMECGVLLV 363 D S +LS + +++L++ D FP T H+E L Sbjct: 432 DSSVLLSQGYQLKQLSMIDMFPQTHHIEAMALFE 465 >gi|186475730|ref|YP_001857200.1| 23S rRNA 5-methyluridine methyltransferase [Burkholderia phymatum STM815] gi|184192189|gb|ACC70154.1| RNA methyltransferase, TrmA family [Burkholderia phymatum STM815] Length = 473 Score = 219 bits (557), Expect = 8e-55, Method: Composition-based stats. Identities = 83/383 (21%), Positives = 146/383 (38%), Gaps = 39/383 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-IFRS---EPIHYRMRAEFHIWH--DG 55 ++ Q+A K L ++ + +FR YR RA + H Sbjct: 109 GCSMQHLDVRAQIAVKGRVLEDNLMHLARLRPETVFRPIHGPSWGYRYRARLTVRHVAKK 168 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115 + ++++ + ++ +++ + + +R ++ QI+ S Sbjct: 169 GGVLVGFHERKSSYVADMTSCEVLPPHVSDMLVPLRHMVEAL-SIRDRMPQIELAVGASV 227 Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDA--LHARKYQIQLIGRANKTKICLDRDYVDERLTV 173 A+V R+L+ LRD LH ++ +Q G + +D L Sbjct: 228 TALVL----RILEPINAADEQLLRDFADLHNVQFWLQPKGPDSVYPFYPLDRQLDYTLPE 283 Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFD 232 G + +R FTQ N IN ++ L + D +L+L+CG GNF+L LAR Sbjct: 284 FGIRMPFR--PTDFTQVNHQINRVLVGRALRLLAPAKTDRVLDLFCGIGNFTLPLARISR 341 Query: 233 RVLAVEIAKPSVEAARYNIAANHVN-NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291 V+ +E ++ A N N V+ + + E T R Sbjct: 342 EVVGIEGSEVLTSRALDNAKENGVDSHTSFACRNLFEVTADDIRAL------------GH 389 Query: 292 FKTIFVDPPRSGL---DDATVGMVQAYP-----HILYISCNPDSLCRDLSIL--STTHTI 341 F +DPPR G A + Q+ I+Y+SCNP +L RD +L + + Sbjct: 390 FDKYLIDPPREGALAVSKALADIAQSGEGRLPTRIVYVSCNPATLARDAGLLVHEAGYRL 449 Query: 342 ERLALFDQFPYTRHMECGVLLVR 364 + + + FP+T H+E L R Sbjct: 450 KGAGVVNMFPHTSHVESIALFER 472 >gi|260890184|ref|ZP_05901447.1| hypothetical protein GCWU000323_01346 [Leptotrichia hofstadii F0254] gi|260860207|gb|EEX74707.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Leptotrichia hofstadii F0254] Length = 476 Score = 219 bits (557), Expect = 8e-55, Method: Composition-based stats. Identities = 66/402 (16%), Positives = 156/402 (38%), Gaps = 58/402 (14%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL-------QIFRSEPIHYRMRAEFHIWHD 54 + +YE+QL K L +++ +L I + I+YR + + Sbjct: 87 GCDFGMLKYEKQLEYKDKMLEEVLTKIAEIDLKKVKISKIIGSDKKINYRNKTAEPFFKK 146 Query: 55 GDDLYHIMFDQQTKERMRIDYFM----PGSLLINALMIEMMATIRLEPLLR--------A 102 + + +++ + ++I+ + ++ + + + Sbjct: 147 NGIIQTGFYSRKSHNVFSAKESLLKSEIAKIIIDKFLQKVNSFAGTKKEFKVFNEVNNTG 206 Query: 103 KLFQIDYLTSQSDQAIVTLIYHRL---------LDDAWRECAIRLRDALHARKYQIQLIG 153 L QI ++ D+ ++ ++ ++ L++ + E ++ + K + + Sbjct: 207 FLKQIMIRNNEKDEVMIVVVVNKNSQYNQLSKVLEEMYDENDC-IKSIYISVKTEQNNVI 265 Query: 154 RANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD- 212 K Y++E + L ++ NSF Q N + + + + + Sbjct: 266 LG-KNVHLFGSQYLEEEM----EGLKFKIYPNSFFQINKKQALKLYDVAINFLNEENKNT 320 Query: 213 -------LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265 +++ + G G +++L+++ +V+ +E + S AA+ N + NV+ V Sbjct: 321 DKIYEKTVIDAFSGTGTIAMMLSKNIKKVIGIESVESSTLAAKLTSYENSIQNVEFVNGK 380 Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISC 323 ++ + + + I DPPR G++++ + V I+YISC Sbjct: 381 VEKELPKILKREDVG-------------AIVFDPPRRGIEESALKSVVQNKIEKIVYISC 427 Query: 324 NPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364 NP + RD+ IL+ + + ++ D FP T H+E LL + Sbjct: 428 NPATFARDVKILAENGYVLTKVTPVDMFPQTPHIEVVGLLYK 469 >gi|116074874|ref|ZP_01472135.1| 23S rRNA methyltransferase/RumA [Synechococcus sp. RS9916] gi|116068096|gb|EAU73849.1| 23S rRNA methyltransferase/RumA [Synechococcus sp. RS9916] Length = 458 Score = 219 bits (557), Expect = 8e-55, Method: Composition-based stats. Identities = 82/391 (20%), Positives = 141/391 (36%), Gaps = 47/391 (12%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFR-----SEPIHYRMRAEFHIWHDG- 55 TL Q A K +L++ + + ++P+ YR RA + D Sbjct: 86 GCTLQHLADASQTAWKQQQLQKALSRIGGIEAPVGALLKSDAKPLGYRNRALIPLHRDAE 145 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-----------LRAKL 104 L + + + + +++ ++AL+ + ++ LR Sbjct: 146 GKLRMGYYRRGSHRIVNLNHCPVLDPRLDALLEPIKHDLQASEWPADADLHSGEGLRHLG 205 Query: 105 FQIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKI 160 ++ T + +V+ L L W E +R + Q + T++ Sbjct: 206 LRLGARTGEVLITLVSSTADLPGLHALAKQWCERWSEVRGVTLNLQPQRNNRVLGDDTQL 265 Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYC 218 ++ER L +F Q N ++ + G +++ YC Sbjct: 266 LSGEGQIEERFADVSLML----GTTTFFQINTLQAEAAVKHLSQWLLDRAGTTTVIDAYC 321 Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278 G G +L LA +VL +E+ K SV+ R N A N + V+ K E Sbjct: 322 GIGTIALPLAAQGHQVLGLELHKASVDQGRLNAARNRLEQVRFKAGDVKALLADALPSHE 381 Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILS 336 + VDPPR GLD V + P + Y+SC+P +L RDL L Sbjct: 382 ---------------ALVVDPPRKGLDADVVDQILECPPRWMAYLSCDPATLSRDLKRLC 426 Query: 337 ---TTHTIERLALFDQFPYTRHMECGVLLVR 364 + +E + D FP T H+E VL+ R Sbjct: 427 VPQGPYEVEGIHPVDFFPQTTHLESLVLMKR 457 >gi|222100448|ref|YP_002535016.1| RNA methyltransferase, TrmA family [Thermotoga neapolitana DSM 4359] gi|221572838|gb|ACM23650.1| RNA methyltransferase, TrmA family [Thermotoga neapolitana DSM 4359] Length = 439 Score = 218 bits (556), Expect = 9e-55, Method: Composition-based stats. Identities = 74/385 (19%), Positives = 154/385 (40%), Gaps = 46/385 (11%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEP----IHYRMRAEFHIWHDGDD 57 + +YE+QL K + + + ++ ++++ EP HYR + EFH+ Sbjct: 76 GCHWMDIRYEKQLLYKKEIVEDLFERMKL-DVEVEDVEPSDLVFHYRTKMEFHL----QG 130 Query: 58 LYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLFQ 106 + + + + I + L I + + + +L+ + + Sbjct: 131 KRLGLKRRGSDFVIDIRSCEVAPEGTGEILEIVRKAVQVLNIPVYNRLTRKGVLKHVVIR 190 Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD- 165 + T Q VT + W + ++ + + I + + + + Sbjct: 191 YAFSTDQLMVIFVT----KTESFPWGKSLVQAILKDIPKVHSIIHVMNSKDSVVLRGPYR 246 Query: 166 --YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGN 222 Y + + ++ +F Q N + +++ V ++ L+LY G G Sbjct: 247 TLYGEGVIVEEFDWEKFQIPPTAFFQSNYSVTSKLIDHVYRELDLQGNEVVLDLYAGIGT 306 Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282 FS+ + RV+AVE ++ +V+A + N N N++ + +F ++ + Sbjct: 307 FSMRTSYSSARVIAVESSRVAVKAGKANANVNGRRNIEYIESDVLDFLKSYQG------- 359 Query: 283 KDIDIHSYRFKTIFVDPPRSGLD-DATVGMVQAYP-HILYISCNPDSLCRDLSILS-TTH 339 R + +DPPRSG D +++ P ++Y+SC P +L RD+ L + Sbjct: 360 --------RADKVILDPPRSGAGLDVMKEILRLSPERVVYVSCEPSTLVRDVQFLQNEGY 411 Query: 340 TIERLALFDQFPYTRHMECGVLLVR 364 ++ R+ FD FP T H+E V LV+ Sbjct: 412 SVVRVKPFDMFPQTYHVETVVTLVK 436 >gi|121996838|ref|YP_001001625.1| 23S rRNA 5-methyluridine methyltransferase [Halorhodospira halophila SL1] gi|121588243|gb|ABM60823.1| 23S rRNA m(5)U-1939 methyltransferase [Halorhodospira halophila SL1] Length = 434 Score = 218 bits (556), Expect = 9e-55, Method: Composition-based stats. Identities = 85/376 (22%), Positives = 137/376 (36%), Gaps = 34/376 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWHDGDD 57 L E Q+A K L + + + YR +A + H Sbjct: 79 GCALQHLPAEAQIAHKERVLAEQLQRIGGVEPEQWLAPLTGPAWGYRRKARLAVKHVPKK 138 Query: 58 LYHIMFDQQTKERM--RIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115 ++ ++ + ++Y + M + A + + ++ QI+ Sbjct: 139 GGVLVGFREKHSPLVAPVEYCPVLDPRVGERMQGL-AELVGSLSIPDRIPQIEVACGDKH 197 Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD---RDYVDERLT 172 A+V R L + RL D A I T + + L+ Sbjct: 198 AALV----FRHLAPLTEDDLDRLSDFAEATGLTILRQPGDESTVTPVAPQPAPQLSYALS 253 Query: 173 VAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHF 231 G + + + FTQ NA IN+ M+E L + G +L+L+CG GNF+L LAR Sbjct: 254 PYGVEVAF--LPTDFTQVNASINMAMVERALEWLQPQSGRRILDLFCGVGNFTLPLAREG 311 Query: 232 DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291 V +E VE A N AAN ++ +F A E R + Sbjct: 312 ATVTGIEGDPRLVERAEENAAANGLH---------ADFAVADLATEEGTRR-----VAGG 357 Query: 292 FKTIFVDPPRSGLDDATVGMV-QAYPHILYISCNPDSLCRDLSIL--STTHTIERLALFD 348 F + +DPPRSG + + ++Y SC P +L RD IL + + D Sbjct: 358 FDAVLLDPPRSGAQEVLSAVAGTGARRVVYCSCGPATLARDAGILVAEHGFRLNAAGIMD 417 Query: 349 QFPYTRHMECGVLLVR 364 FP+T H+E + R Sbjct: 418 MFPHTAHVESFAVFDR 433 >gi|260889091|ref|ZP_05900354.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Leptotrichia hofstadii F0254] gi|260861151|gb|EEX75651.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Leptotrichia hofstadii F0254] Length = 476 Score = 218 bits (556), Expect = 9e-55, Method: Composition-based stats. Identities = 71/395 (17%), Positives = 142/395 (35%), Gaps = 56/395 (14%) Query: 10 YEQQLAEKVDRLRQMMLAF----QVPNLQIFRSEPIHYRMRAEFHIW--HDGDDLYHIMF 63 Y++QL K +++ + + + +P YR + EF G + + Sbjct: 95 YDEQLEIKAGHIKKELDKIIKYDYIFEEPVRSVKPNKYRNKMEFSFGNATKGGPIILGLH 154 Query: 64 DQQT-KERMRID-----------YFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLT 111 Q + + + +D ++ + + + R + + T Sbjct: 155 KQNSFHDIVEVDGLKLMDDNFNKIYVFCNEFCKKTGFDFYHRLDHIGFFRNLVIRKAEFT 214 Query: 112 SQSDQAIVTLIYHRLLDDAWRE-------------CAIRLRDALHARKYQIQLIGRANKT 158 Q IVT ++ + ++ LH + + Sbjct: 215 KQILVNIVTTTQISEMEKEKFQKEFKEGLLALNLDDNFKIIGILHTFNDNFSDMVISESE 274 Query: 159 KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG------D 212 I Y + LT L ++ SF Q N+ + VL + I+ Sbjct: 275 TIL----YGERDLTEEIFGLKFKISPYSFFQTNSQTVEKLYGKVLTYLEEIENIKIHEVT 330 Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 + +L+ G G ++++ +V +E+ +VE A N N++ N + Sbjct: 331 VFDLFSGTGTIGQIVSKKAKQVYGIELVPEAVEKANENAKLNNIQNAHFIAGDV------ 384 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330 F +L + D + + +DPPR+G+ + T+ + Y +I+Y+SCNP +L Sbjct: 385 ------FAKLDEFDNNGINPDILILDPPRAGVGEKTITKLVKYNTKNIIYVSCNPKTLMT 438 Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364 DL + + R ++ D FP T H+E LL + Sbjct: 439 DLMKFEEFGYRLVRCSVVDMFPVTPHLEVVCLLEK 473 >gi|167619816|ref|ZP_02388447.1| 23S rRNA 5-methyluridine methyltransferase [Burkholderia thailandensis Bt4] gi|257138961|ref|ZP_05587223.1| 23S rRNA 5-methyluridine methyltransferase [Burkholderia thailandensis E264] gi|143580771|sp|Q2SWE9|RUMA_BURTA RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase Length = 465 Score = 218 bits (556), Expect = 1e-54, Method: Composition-based stats. Identities = 79/380 (20%), Positives = 136/380 (35%), Gaps = 33/380 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWH--DG 55 ++ Q+A K L + + YR RA + H Sbjct: 101 GCSMQHLDMRAQVAIKQRVLEDNLWHLAKLRAEAMFAPIHGPSWGYRYRARLTVRHVAKK 160 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115 + ++++ + ++A+++ + + +R ++ QI+ Sbjct: 161 GGVLVGFHEKKSSYVADMTSCEVLPPHVSAMLVPLRRLVEQL-SIRDRMPQIELAVGSQV 219 Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175 A+V R+L+ LR+ A + Q L + T V T+ Sbjct: 220 TALVL----RVLEPINAADETLLREFADAHRVQFWLQPKGPDTVAPFYPLDVQLDYTLPE 275 Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRV 234 + FTQ N IN ++ L +GD +L+L+CG GNF+L LAR V Sbjct: 276 FGIRMPFKPTDFTQVNHQINRVLVGRALRLLAPERGDRVLDLFCGIGNFTLPLARLAREV 335 Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294 + +E ++ A N N V+ + F D F Sbjct: 336 VGIEGSETLTSRALANAKENGVDGHT-----------SFASRNLFEVTADDLHALGAFDK 384 Query: 295 IFVDPPRSGL---DDATVGMVQAYP-----HILYISCNPDSLCRDLSIL--STTHTIERL 344 VDPPR G A + Q+ I+Y+SCNP +L RD +L + ++ Sbjct: 385 FLVDPPREGALAVSKALAEIAQSGEGPLPARIVYVSCNPSTLARDAGLLVHEAGYRLKGA 444 Query: 345 ALFDQFPYTRHMECGVLLVR 364 + + FP+T H+E L R Sbjct: 445 GVVNMFPHTSHVESIALFER 464 >gi|15643851|ref|NP_228900.1| RNA methyltransferase, putative [Thermotoga maritima MSB8] gi|50401706|sp|Q9X0H9|Y1094_THEMA RecName: Full=Uncharacterized RNA methyltransferase TM_1094 gi|4981638|gb|AAD36170.1|AE001768_19 RNA methyltransferase, putative [Thermotoga maritima MSB8] Length = 439 Score = 218 bits (556), Expect = 1e-54, Method: Composition-based stats. Identities = 79/385 (20%), Positives = 147/385 (38%), Gaps = 46/385 (11%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEP----IHYRMRAEFHIWHDGDD 57 + +YE QL K + L + + +++ EP HYR + EFH Sbjct: 76 GCHWMDVKYETQLRYKKEVLIDLFERSNLK-VEVEDVEPSDLVFHYRTKMEFHF----QG 130 Query: 58 LYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLFQ 106 + + + + I + L + + + +L+ + + Sbjct: 131 RKLGLKKRNSDFVIDIKDCEVAPEGTGEILNTVKEAVQVLNVPVYNWETRKGVLKHLVIR 190 Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD- 165 + T Q VT + W +R + + I + + + + Sbjct: 191 YAFSTDQFMVIFVT----KTESFPWGRDLVRAVLKRFPKIHSIIHVMNSKDSVVLRGPYK 246 Query: 166 --YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGN 222 Y + + ++ +F Q N I +++ V ++ L+LY G G Sbjct: 247 TLYGEGVIVEEFDWERFQIPPTAFFQSNYSITSKLIDHVYREQALQGNEVVLDLYAGIGT 306 Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282 FS+ + RV++VE ++ +V+A + N N N++ V +F + Sbjct: 307 FSVRTSFSAARVISVESSRVAVKAGKANANINSRKNIEYVEQDVLDFLKNY--------- 357 Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSIL-STTH 339 S R I +DPPRSG + + + I+Y+SC+P +L RDL +L + Sbjct: 358 ------SGRADRIILDPPRSGAGPEVMKEIARLSPERIVYVSCDPSTLVRDLKVLVENGY 411 Query: 340 TIERLALFDQFPYTRHMECGVLLVR 364 +I R+ FD FP T H+E V LV+ Sbjct: 412 SIVRVKPFDMFPQTYHVETAVTLVK 436 >gi|148270770|ref|YP_001245230.1| RNA methyltransferase [Thermotoga petrophila RKU-1] gi|147736314|gb|ABQ47654.1| RNA methyltransferase, TrmA family [Thermotoga petrophila RKU-1] Length = 439 Score = 218 bits (555), Expect = 1e-54, Method: Composition-based stats. Identities = 79/385 (20%), Positives = 146/385 (37%), Gaps = 46/385 (11%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEP----IHYRMRAEFHIWHDGDD 57 + +YE QL K + L + + ++ EP HYR + EFH Sbjct: 76 GCHWMDVKYETQLRYKKEVLLDLFERSNLKA-EVEDVEPSDLVFHYRTKMEFHF----QG 130 Query: 58 LYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLFQ 106 + + + + I + L + + + +L+ + + Sbjct: 131 RKLGLKKRDSDFVIDIKDCEVAPEGTGEILNTVKEAVQVLNVPVYNWETKKGVLKHLVIR 190 Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD- 165 + T Q VT + W + +R + + I + + + + Sbjct: 191 YAFSTDQFMVIFVT----KTESFPWEKDLVRAVLKRFPKIHSIIHVMNSKDSVVLRGPYR 246 Query: 166 --YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGN 222 Y + + ++ +F Q N + +++ V ++L +LY G G Sbjct: 247 TLYGEGVIVEEFDWERFQIPPTAFFQSNYSVTSKLIDHVYRELALQGNEVLLDLYAGIGT 306 Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282 FS+ + RV++VE ++ +V+A + N N N++ V +F + Sbjct: 307 FSVRASFSAARVISVESSRVAVKAGKANANINSRRNIEYVEQDVLDFLKNY--------- 357 Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STTH 339 S R I +DPPRSG V + + I+Y+SC P +L RDL +L + Sbjct: 358 ------SGRADRIILDPPRSGAGPEVVKEIVRLSPERIVYVSCEPSTLARDLKVLVENGY 411 Query: 340 TIERLALFDQFPYTRHMECGVLLVR 364 +I R+ FD FP T H+E V LV+ Sbjct: 412 SILRVKPFDMFPQTYHVETAVTLVK 436 >gi|124266449|ref|YP_001020453.1| 23S rRNA 5-methyluridine methyltransferase [Methylibium petroleiphilum PM1] gi|124259224|gb|ABM94218.1| putative 23S rRNA (uracil-5-)-methyltransferase [Methylibium petroleiphilum PM1] Length = 454 Score = 218 bits (555), Expect = 1e-54, Method: Composition-based stats. Identities = 86/380 (22%), Positives = 147/380 (38%), Gaps = 39/380 (10%) Query: 12 QQLAEKVDRLRQMMLAFQVPN----LQIFRSEPIHYRMRAEFHIWH--DGDDLYHIMFDQ 65 Q+A K L + L+ YR RA + H + ++ Sbjct: 89 AQVAVKQRVLEDNLWHLGKVKAGQMLRPIEGPTWGYRYRARLSVRHVVKKGKVLIGFHER 148 Query: 66 QTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHR 125 ++ + ++A+++ + A I R +L QI+ ++ +VT + R Sbjct: 149 KSSYVADMSRCEILPPHLSAMLLPLRALIAAMD-GRDRLPQIEVAIGEAPDGLVTALVLR 207 Query: 126 LLDDAWRECAIRLR--DALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQI 183 L+ + RLR A H ++ +Q G ++ + L G + ++ Sbjct: 208 HLEPLSADDLQRLRAFGAEHGVQWWLQPKGPDTVQRLDDGGPQLAYTLPEYGVVMPFK-- 265 Query: 184 ENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAK 241 FTQ N IN ++ L +QGD +++ +CG GNF+L LA VL +E ++ Sbjct: 266 PTDFTQVNHAINRALVVRALRL-LAVQGDERVIDWFCGLGNFTLPLATQAREVLGIEGSE 324 Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301 V +R N A N +++ R ++ F L + VDPPR Sbjct: 325 ALVARSRDNAALNGLSHKT--RFDARNL---------FELLPADLVAYGSATKWLVDPPR 373 Query: 302 SG---LDDATVGMVQAYP---------HILYISCNPDSLCRDLSIL--STTHTIERLALF 347 G L A VQ I+Y+SCNP +L RD +L + + Sbjct: 374 EGAFALAKAVADAVQDPGQAPGWVPPARIVYVSCNPATLARDAGLLVHQAGYRCVQAGAV 433 Query: 348 DQFPYTRHMECGVLLVRKPS 367 + FP+T H+E + R S Sbjct: 434 NMFPHTAHVESIAVFDRNAS 453 >gi|41614849|ref|NP_963347.1| hypothetical protein NEQ053 [Nanoarchaeum equitans Kin4-M] gi|51316718|sp|Q74N58|Y053_NANEQ RecName: Full=Uncharacterized RNA methyltransferase NEQ053 gi|40068573|gb|AAR38908.1| NEQ053 [Nanoarchaeum equitans Kin4-M] Length = 447 Score = 218 bits (555), Expect = 1e-54, Method: Composition-based stats. Identities = 82/381 (21%), Positives = 161/381 (42%), Gaps = 50/381 (13%) Query: 2 SGTLL-IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIW-----HDG 55 G L + Y+ QL K + + F I + I+YR R ++ I+ + Sbjct: 94 GGCLWGLMDYQYQLEFKKKVIENL---FGYDKDIIPSPKTIYYRNRMDYPIYNKVSLKEP 150 Query: 56 DDLYHIMFDQQTK-----ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYL 110 Y + ++ K + I+ F + I I T++ LR + + Sbjct: 151 GKWYGYIPIKECKMLSKEAEIIINEF---NKFIEKYKIPSWDTVKHTGFLRYLVIREGKF 207 Query: 111 TSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQ----LIGRANKTKICLDRDY 166 T + I+T + ++ W + ++D + + + I+ + + K + Sbjct: 208 TKERMIHIIT-YKRKKFEELW-DFIENIKDLVTSVYWGIREDLGDVSISEKLYHYYGSKF 265 Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSL 225 + ER+ + Y NSF Q N+ V++++ V + + D+ L+LY G G FSL Sbjct: 266 LRERIL----DIEYYISPNSFFQTNSYQAVNLVKIVKEFLEPSENDVVLDLYSGVGLFSL 321 Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285 +A +V+ +EI + +VE A+ N + N+++ + + ++ Sbjct: 322 QIANEVKKVIGIEIVEEAVEMAKLNASINNID-AEFIASPVEK----------------- 363 Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILSTTHTIER 343 + I VDPPR+GL + + ++ I+Y+SCNP + RD++ L + I Sbjct: 364 -APIIKANKIIVDPPRAGLTNKAIEYIEKINPDTIVYVSCNPYTQKRDINKL-KGYKIID 421 Query: 344 LALFDQFPYTRHMECGVLLVR 364 + D FP T H+E +L+ + Sbjct: 422 MQPLDMFPNTPHIENVILMKK 442 >gi|241662749|ref|YP_002981109.1| 23S rRNA 5-methyluridine methyltransferase [Ralstonia pickettii 12D] gi|240864776|gb|ACS62437.1| RNA methyltransferase, TrmA family [Ralstonia pickettii 12D] Length = 496 Score = 218 bits (555), Expect = 1e-54, Method: Composition-based stats. Identities = 79/386 (20%), Positives = 136/386 (35%), Gaps = 42/386 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWH--DG 55 ++ Q+A K L + + YR RA + H Sbjct: 129 GCSMQHLDSRAQVAIKQRVLEDDLWHLAKLRPDVVFRPIAGPDWGYRYRARLTVRHVAAK 188 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115 + ++++ + ++AL++ + + ++ ++ QI+ Q Sbjct: 189 GGVLVGFHERKSSYVADMTSCEVLPPHVSALLVPLRELVGRLSIV-QRMPQIELAVGQDV 247 Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC---LDRDYVDERLT 172 A+V R L+ E LR Q L + T LDR + L Sbjct: 248 TALVL----RNLEPITAEDEAELRAFADHHNIQFWLQPKGPDTVYPFYPLDR-TLTYTLP 302 Query: 173 VAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHF 231 G T+ ++ FTQ N IN ++ L GD LL+L+CG GNF+L +A Sbjct: 303 EFGITMPFK--PTDFTQVNHQINRVLMSRALKLLDAQPGDRLLDLFCGIGNFTLPMATRA 360 Query: 232 DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291 V+ +E ++ A N N + + F D + Sbjct: 361 REVMGIEGSEALTTRALANAQHNGL-----------DAKTKFACRNLFEVTADDIAALGK 409 Query: 292 FKTIFVDPPRSGLDDATVGMVQ-----------AYPHILYISCNPDSLCRDLSIL--STT 338 F VDPPR G + + + I+Y+SCNP +L RD +L Sbjct: 410 FDRWLVDPPREGALAVSKALAELSQRGGEEADLLPKRIVYVSCNPATLARDAGLLVHEAG 469 Query: 339 HTIERLALFDQFPYTRHMECGVLLVR 364 + + + + FP+T H+E + R Sbjct: 470 YRLAGAGVVNMFPHTSHVESMAVFER 495 >gi|68248938|ref|YP_248050.1| 23S rRNA 5-methyluridine methyltransferase [Haemophilus influenzae 86-028NP] gi|81336651|sp|Q4QNK7|RUMA_HAEI8 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|68057137|gb|AAX87390.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Haemophilus influenzae 86-028NP] Length = 438 Score = 218 bits (555), Expect = 1e-54, Method: Composition-based stats. Identities = 88/364 (24%), Positives = 154/364 (42%), Gaps = 32/364 (8%) Query: 11 EQQLAEKVDRLRQMMLAFQVPNLQIFRS----EPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66 E Q K L + + Q F+ + YR R +W + + M +Q Sbjct: 98 EMQRKAKQSALFKRLSKLQS-EPISFQPMICGDAWAYRRRVRLSLWFNPNTKQIDMGFRQ 156 Query: 67 --TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 T + + + IN L+ ++ A + + +L I+ + + + A++ L Y Sbjct: 157 KNTNDLIPVQSCEVAEPAINYLLPKLTALLEKFSTPK-QLGHIELVAADNGVAML-LRYT 214 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + L + R ++ A + ++ L +++K +++ Y D + Sbjct: 215 KNLAEIDRTLLLKF-----AEQEKLMLFLQSDKG---IEQIYGDAPYYQFSDGIKLHFDI 266 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 F Q N+ +N M+ L + Q D +L+L+CG GNF+L LA+ + +E Sbjct: 267 RDFIQVNSALNERMINTALDWLELSQQDCVLDLFCGMGNFTLPLAKRVKSAVGIEGVFEM 326 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 V+ A N A N + N++ + Q+ + N+ F I +DPPRSG Sbjct: 327 VQKAAQNAARNQIKNIEFFQAD---LDQSFVEQPWANQ---------SFNKILLDPPRSG 374 Query: 304 LDDATVGMVQAY-PHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVL 361 A + + ILY+SCNP +L RD IL + IE+ A+ D FP+T H+E L Sbjct: 375 AAFALNALCELKAEKILYVSCNPATLVRDAEILCDFGYKIEKSAVIDMFPHTGHLESITL 434 Query: 362 LVRK 365 K Sbjct: 435 FTTK 438 >gi|328675743|gb|AEB28418.1| RNA methyltransferase, trmA family [Francisella cf. novicida 3523] Length = 449 Score = 218 bits (555), Expect = 1e-54, Method: Composition-based stats. Identities = 77/380 (20%), Positives = 153/380 (40%), Gaps = 35/380 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQV-PNLQIF-----RSEPIHYRMRAEFHIWH-- 53 +L + Q+ K L + + S YR +A + + Sbjct: 87 GCSLQHMSTDAQIEHKQQTLLNQLKYIGNGVEPESILPPLRTSNTEGYRNKARLGVRYVS 146 Query: 54 DGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQ 113 + ++ + ID + + L+ + E+ + I + + + Q++ Sbjct: 147 KKGKILVGFRERNGRYLADIDKCIVLNPLVGEKITEISSFIETLSIYQH-IAQLEIAIDD 205 Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKT--KICLDRDYVDERL 171 + AI+ R L+ E +L+ Y I L + T ++ D ++L Sbjct: 206 TRPAIIV----RHLEPFTNEDLEKLKAFGLKNNYWIYLQSKGPDTIFRLYPQDDVEPKKL 261 Query: 172 ---TVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVL 227 VAG + + N FTQ N IN M++ + + D +++L+CG GNF+L + Sbjct: 262 NYQPVAGIDIGFE--PNDFTQVNNDINRKMIKRAIKLLDISENDSIIDLFCGLGNFTLPI 319 Query: 228 ARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDI 287 ++H V+ VE V+ A+ N++ NV + ++ + FN Sbjct: 320 SQHAKTVIGVEGEPTMVKRAKETADNNNITNVNFY---AANLFESFEDKEWFN------- 369 Query: 288 HSYRFKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSIL--STTHTIERL 344 ++ + + +DPPR+G + + + I+Y+SC+ +L RD IL S + + Sbjct: 370 -NFEYNKMLLDPPRAGAQEVCSNIEKFNVKRIVYVSCDTATLARDAGILVKSKGYKLISA 428 Query: 345 ALFDQFPYTRHMECGVLLVR 364 + D FP+T H+E + + Sbjct: 429 GVMDMFPHTMHVESIAVFEK 448 >gi|1717750|sp|P55134|TRMA_NEIGO RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT gi|551910|gb|AAA63404.1| ORF [Neisseria gonorrhoeae] Length = 225 Score = 218 bits (555), Expect = 1e-54, Method: Composition-based stats. Identities = 111/230 (48%), Positives = 147/230 (63%), Gaps = 7/230 (3%) Query: 71 MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDA 130 +R D F S +N LM E++A LR + +++L++ S + +VT+IYH+ LDD Sbjct: 1 IRCDRFDAASEAVNCLMPELIAVAAQSAELRNHWYAVEFLSTLSGEMLVTMIYHKRLDDE 60 Query: 131 WRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQP 190 W + A L+ L I +IGR+ KI L +DYV E L V R YRQIE SFTQP Sbjct: 61 WMKAAQALQQQL-----DISVIGRSRGQKIVLKQDYVTETLRVGDRDFHYRQIEGSFTQP 115 Query: 191 NAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN 250 NA + MLEW A K GDLLELYCGNGNF+L L+R+F +VLA EI+K SV AA++N Sbjct: 116 NAAVCRKMLEWACARRKAWGGDLLELYCGNGNFTLPLSRYFRQVLATEISKTSVSAAQWN 175 Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVD 298 I AN + N+KI R+S++EFT+A +REF RLK+ I + Y F TIFVD Sbjct: 176 IEANWIGNIKIARLSAEEFTEAYTGKREFTRLKESGIVLTDYAFSTIFVD 225 >gi|332289405|ref|YP_004420257.1| 23S rRNA 5-methyluridine methyltransferase [Gallibacterium anatis UMN179] gi|330432301|gb|AEC17360.1| 23S rRNA 5-methyluridine methyltransferase [Gallibacterium anatis UMN179] Length = 435 Score = 218 bits (555), Expect = 1e-54, Method: Composition-based stats. Identities = 92/373 (24%), Positives = 154/373 (41%), Gaps = 34/373 (9%) Query: 2 SGTLL-IDQYEQQLAEKVDRLRQMMLAFQVPNLQI---FRSEPIHYRMRAEFHIWH--DG 55 G + E Q K L + + P ++I E HYR RA + + Sbjct: 87 GGCQMQHIPIEMQRRAKEQALMRQLQKIA-PEVKIEAMISGEQWHYRRRARLSLQYVATT 145 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115 + +Q+ + + I ++AL+ ++ ++ R KL I+ + + + Sbjct: 146 KQIKLGFRQKQSNQLVEISQCPVLVPALSALLPALIQLLQQWQQPR-KLGHIELVAADNG 204 Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175 A+ R L A +L+ L ++YQ+ L + ++ + + Sbjct: 205 IALFL----RHLGALNAVDAEKLQ--LFGQQYQLMLFVSEQEQQVSAWTE-ARPYYHIGA 257 Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRV 234 L + F Q N IN M++ L D +L+L+CG GNF+L LA+ RV Sbjct: 258 LKLFFDI--RDFIQVNRQINEKMVQTALNWLDPQADDQILDLFCGMGNFTLPLAQQSKRV 315 Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNRLKDIDIHSYRFK 293 + +E VE ARYN N + N + S F + + +FN+ Sbjct: 316 VGIEGVAQMVEKARYNAQQNGITNALFHQADLSVPFANQIWAQEKFNK------------ 363 Query: 294 TIFVDPPRSGLDDATVGMVQAY-PHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFP 351 I +DPPRSG +++ ILY+SCNP +L RD IL + +E+ A+ D FP Sbjct: 364 -ILLDPPRSGAAFVLNHLIELQAEKILYVSCNPATLVRDAKILVENGYHLEKSAMIDMFP 422 Query: 352 YTRHMECGVLLVR 364 T H+E L + Sbjct: 423 QTGHLESITLFSK 435 >gi|251793349|ref|YP_003008077.1| 23S rRNA 5-methyluridine methyltransferase [Aggregatibacter aphrophilus NJ8700] gi|247534744|gb|ACS97990.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Aggregatibacter aphrophilus NJ8700] Length = 438 Score = 218 bits (555), Expect = 1e-54, Method: Composition-based stats. Identities = 85/364 (23%), Positives = 158/364 (43%), Gaps = 32/364 (8%) Query: 11 EQQLAEKVDRLRQMMLAFQVPNLQ---IFRSEPIHYRMRAEFHIWHDGD--DLYHIMFDQ 65 E Q + K L Q + Q +Q + + + YR R I DG L + + Sbjct: 98 ELQRSAKQKALMQRLSRLQSTPIQFMPLLQGDEWGYRRRVRLSIGFDGKTRKLQIGLRRK 157 Query: 66 QTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHR 125 +++ + I+ + + +N L+ ++ A + + + +L I+ +++ + A++ R Sbjct: 158 NSQQIITIERCLVLAQPLNNLLPKLTA-LFAQWSMPQQLGHIELVSADNGVAMLL----R 212 Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIEN 185 + + + L + + + + + Y L + L + Sbjct: 213 HVKNIAKNDRTLLLNFAEQHQLMLFVQEHDAIEHWRGAQPY--YGLNDGSQ-LQFDI--R 267 Query: 186 SFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 F Q NA +N M+ L + Q +L+L+CG GNF+L L+R + +E V Sbjct: 268 DFIQINADLNRQMITTALDWLSLNSQDHVLDLFCGMGNFTLPLSRKVKSAVGIEGVSAMV 327 Query: 245 EAARYNIAANHVNNVKIVRMSSKE-FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 E AR N N NV+ + ++ F ++ FN+ I +DPPR+G Sbjct: 328 EKARANAERNRCANVQFYQADLEQPFISQPWAQQPFNK-------------ILLDPPRTG 374 Query: 304 LDDATVGMVQ-AYPHILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVL 361 A + Q A ILY+SCNP +L RD +L+ + ++++A+ D FP+T H+E L Sbjct: 375 AAFALQALCQLAAEKILYVSCNPATLVRDTEILLNAGYQLDKVAMIDMFPHTGHLESISL 434 Query: 362 LVRK 365 +K Sbjct: 435 YQKK 438 >gi|167581700|ref|ZP_02374574.1| 23S rRNA 5-methyluridine methyltransferase [Burkholderia thailandensis TXDOH] Length = 465 Score = 218 bits (555), Expect = 1e-54, Method: Composition-based stats. Identities = 79/380 (20%), Positives = 136/380 (35%), Gaps = 33/380 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWH--DG 55 ++ Q+A K L + + YR RA + H Sbjct: 101 GCSMQHLDMRAQVAIKQRVLEDNLWHLAKLRAEAMFAPIHGPSWGYRYRARLTVRHVAKK 160 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115 + ++++ + ++A+++ + + +R ++ QI+ Sbjct: 161 GGVLVGFHEKKSSYVADMTSCEVLPPHVSAMLVPLRRLVEQL-SIRDRMPQIELAVGSQV 219 Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175 A+V R+L+ LR+ A + Q L + T V T+ Sbjct: 220 TALVL----RVLEPINATDETLLREFADAHRVQFWLQPKGPDTVAPFYPLDVQLDYTLPE 275 Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRV 234 + FTQ N IN ++ L +GD +L+L+CG GNF+L LAR V Sbjct: 276 FGIRMPFKPTDFTQVNHQINRVLVGRALRLLAPERGDRVLDLFCGIGNFTLPLARLAREV 335 Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294 + +E ++ A N N V+ + F D F Sbjct: 336 VGIEGSETLTSRALANAKENGVDGHT-----------SFASRNLFEVTADDLRALGAFDK 384 Query: 295 IFVDPPRSGL---DDATVGMVQAYP-----HILYISCNPDSLCRDLSIL--STTHTIERL 344 VDPPR G A + Q+ I+Y+SCNP +L RD +L + ++ Sbjct: 385 FLVDPPREGALAVSKALAEIAQSGEGPLPARIVYVSCNPSTLARDAGLLVHEAGYRLKGA 444 Query: 345 ALFDQFPYTRHMECGVLLVR 364 + + FP+T H+E L R Sbjct: 445 GVVNMFPHTSHVESIALFER 464 >gi|114562226|ref|YP_749739.1| 23S rRNA 5-methyluridine methyltransferase [Shewanella frigidimarina NCIMB 400] gi|122300475|sp|Q086B4|RUMA_SHEFN RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|114333519|gb|ABI70901.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Shewanella frigidimarina NCIMB 400] Length = 455 Score = 217 bits (554), Expect = 2e-54, Method: Composition-based stats. Identities = 81/381 (21%), Positives = 144/381 (37%), Gaps = 38/381 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ---------VPNLQIFRSEPIHYRMRAEFHIW 52 L Q K L ++ V + + + HYR RA Sbjct: 91 GCDLQHMDTNAQREHKQTALVDLISKLSSAKAIDADIVADPIVGEA--WHYRRRARLATL 148 Query: 53 HDGD--DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYL 110 D + L + + + I S ++AL+ + A + +A L ++ Sbjct: 149 FDKNTQRLQLGFRAGNSNKIVSIQQCPVLSESLSALITPLAANLNQLKA-KASLGHVE-- 205 Query: 111 TSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDER 170 +Q+D ++ + A + H +Q T++ DE Sbjct: 206 LTQADNGNFAVLRVTKVLPASDIRWLTGFAEKHQLNLLLQD-DAGQLTQLFPLLPAGDEA 264 Query: 171 LTVAGRTLIYR-----QIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFS 224 + + L +F Q N IN M++ + G+ +L+L+CG GNFS Sbjct: 265 IALPYYHLAQEAVRCSFTPGNFVQVNGAINQAMVDQAIEWLDPQSGERILDLFCGVGNFS 324 Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284 L LA V+ VE V+ A+ N N ++NV + + + ++ Sbjct: 325 LPLALKAAEVIGVEGVPEMVQQAKQNAIDNQLDNVTFYHAD---LSADLSTQTWLGKI-- 379 Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDLS-ILSTTHTIE 342 + +DP R+G ++ + + P ++Y+SCNP SL RD S +L++ + I Sbjct: 380 --------DKLLLDPARAGAFESLQWLQKMQPKKVVYVSCNPASLARDSSVLLASGYRIA 431 Query: 343 RLALFDQFPYTRHMECGVLLV 363 ++ L D FP T H+E VL Sbjct: 432 QVGLVDMFPQTHHIEAMVLFE 452 >gi|294637605|ref|ZP_06715885.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Edwardsiella tarda ATCC 23685] gi|291089235|gb|EFE21796.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Edwardsiella tarda ATCC 23685] Length = 440 Score = 217 bits (554), Expect = 2e-54, Method: Composition-based stats. Identities = 78/359 (21%), Positives = 136/359 (37%), Gaps = 30/359 (8%) Query: 13 QLAEKVDRLRQMMLAFQVPNLQ---IFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ--T 67 Q K L+++M + + E YR RA F + D I+ +Q + Sbjct: 100 QQQSKSQMLQRLMARETGVTITPSALIAGEAYGYRRRARFGLQFDAKRQRVILGFRQAAS 159 Query: 68 KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLL 127 + + + + + AL++ + + R +L ++ + + + +V R L Sbjct: 160 NDLVALRACPVLAPPLEALLLPLGDCLSALRA-RRRLGHLELVLADNGPLMVL----RHL 214 Query: 128 DDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSF 187 D L + L + L E + F Sbjct: 215 DPLHSADQAALEAFARQHGLALYLSDGQGAPRRLLG-----EAPYYQVADVRLAFDPQDF 269 Query: 188 TQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246 Q N +N M+ L + +L+L+CG GNF+L LAR V+ VE + V Sbjct: 270 IQVNGQVNQQMVARALDWLDARADERVLDLFCGMGNFTLPLARQAQWVVGVEGVRELVAR 329 Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306 A+ N N ++NV+ + +E + + F + +DP R+G Sbjct: 330 AQNNARHNGLSNVEFFHQNLEE------------DVTCQPWAAQGFDKVLLDPARAGAPG 377 Query: 307 ATVGMVQAYP-HILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVLLV 363 +V P ++Y+SCNP +L RD +L + + RL L D FP+T H+E L Sbjct: 378 VMQHIVHLAPRRVVYVSCNPATLARDSRVLLQGGYQLTRLCLLDMFPHTGHLESMALFE 436 >gi|145628685|ref|ZP_01784485.1| 23S rRNA (uracil-5-)-methyltransferase [Haemophilus influenzae 22.1-21] gi|145638756|ref|ZP_01794365.1| molybdenum cofactor biosynthesis protein [Haemophilus influenzae PittII] gi|144979155|gb|EDJ88841.1| 23S rRNA (uracil-5-)-methyltransferase [Haemophilus influenzae 22.1-21] gi|145272351|gb|EDK12259.1| molybdenum cofactor biosynthesis protein [Haemophilus influenzae PittII] gi|309750246|gb|ADO80230.1| 23S rRNA m5U1939 methyltransferase [Haemophilus influenzae R2866] Length = 438 Score = 217 bits (554), Expect = 2e-54, Method: Composition-based stats. Identities = 89/364 (24%), Positives = 154/364 (42%), Gaps = 32/364 (8%) Query: 11 EQQLAEKVDRLRQMMLAFQVPNLQIFRS----EPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66 E Q K L + + Q F+ + YR R +W + + M +Q Sbjct: 98 EMQRKAKESALFKRLSKLQS-EPISFQPMICGDAWAYRRRVRLSLWFNPNTKQIDMGFRQ 156 Query: 67 --TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 T + + I IN L+ ++ A + + +L I+ + + + A++ L Y Sbjct: 157 KNTNDLIPIQSCEVAEPAINYLLPKLTALLEKFSAPK-QLGHIELVAADNGVAML-LRYT 214 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + L + R ++ A + ++ L ++++T +++ Y D + Sbjct: 215 KNLAEIDRTLLLKF-----AEQEKLMLFLQSDET---IEQIYGDAPYYQFSDGIKLHFDI 266 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 F Q N +N M+ L + Q D +L+L+CG GNF+L LA+ + +E Sbjct: 267 RDFIQVNRALNERMVNTALDWLELSQQDCVLDLFCGMGNFTLPLAKRVKSAVGIEGVFEM 326 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 V+ A N A N + N++ + Q+ + N+ F I +DPPRSG Sbjct: 327 VQKAAQNAARNQIKNIEFFQAD---LDQSFVEQPWANQ---------SFNKILLDPPRSG 374 Query: 304 LDDATVGMVQAY-PHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVL 361 A + + ILY+SCNP +L RD IL + IE+ A+ D FP+T H+E L Sbjct: 375 AAFALNALCELKAEKILYVSCNPATLVRDAEILCDFGYKIEKSAVIDMFPHTGHLESITL 434 Query: 362 LVRK 365 K Sbjct: 435 FTTK 438 >gi|240103955|ref|YP_002960264.1| 23S rRNA (uracil-5-)-methyltransferase (rumA) [Thermococcus gammatolerans EJ3] gi|239911509|gb|ACS34400.1| 23S rRNA (uracil-5-)-methyltransferase (rumA) [Thermococcus gammatolerans EJ3] Length = 421 Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats. Identities = 87/378 (23%), Positives = 141/378 (37%), Gaps = 50/378 (13%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEP-IHYRMRAEFHIWHDGDDLYH 60 L Y QL K +L ++ +++I S +R R + I G Sbjct: 75 GCLLQHLDYRDQLEFKRFKLNAILNE----DVEIIPSPKIFGHRNRIDVVISTRGIGFRR 130 Query: 61 IMFDQQTKERMRIDYFMP-----------GSLLINALMIEMMATIRLEPLLRAKLFQIDY 109 + I++ I + + + E LLR + + Sbjct: 131 YGTWWD---VVDIEWCPVFGPSSKRVLKSLREFIEDHEVSLYEIGKNEGLLRYIVIREGK 187 Query: 110 LTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDE 169 T +VT L + + + + + + ++++ E Sbjct: 188 FTGDLMVNLVTGPGE--LPEDFPQYFDYAESIYWSVNRTPSDVSYGEIERF-WGKEFIKE 244 Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLAR 229 L +Y NSF Q N+ V +L V +G G +L+LY G G F + LAR Sbjct: 245 EL----DGTVYLIHPNSFFQTNSYGAVELLREVAKRAEG--GRVLDLYSGVGTFGVYLAR 298 Query: 230 HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHS 289 V +EI +VE A N N V E F D D+ S Sbjct: 299 KGFSVEGIEINPFAVEMANRNAEINGV-------------------EARFRVGADKDVGS 339 Query: 290 YR-FKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILSTTHTIERLAL 346 + + T+ VDPPR+GL V + + ++Y+SCNP +L RDL+ L + +T+ + Sbjct: 340 LQAYDTVIVDPPRAGLHPKLVKRLVQKGPEKLIYVSCNPKTLARDLNELKSVYTVGGIIG 399 Query: 347 FDQFPYTRHMECGVLLVR 364 D FP+T H+E V L R Sbjct: 400 LDMFPHTPHVEVVVELRR 417 >gi|299135646|ref|ZP_07028830.1| (Uracil-5)-methyltransferase [Acidobacterium sp. MP5ACTX8] gi|298601770|gb|EFI57924.1| (Uracil-5)-methyltransferase [Acidobacterium sp. MP5ACTX8] Length = 433 Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats. Identities = 88/378 (23%), Positives = 142/378 (37%), Gaps = 30/378 (7%) Query: 2 SGTLL-IDQYEQQLAEKVDRLRQMMLAFQV---PNLQIFRSEPIHYRMRAEFHIWHDGDD 57 G +Y Q+ K D LR+ M V P + EP YR R F + Sbjct: 72 GGCQYQHAEYATQVEIKRDILRETMQRAGVNTLPEIASHTGEPWGYRNRVRFRLGKVEGL 131 Query: 58 LYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKL---FQIDYLTSQS 114 + T + I + L+ + ++ + L ++++ + Sbjct: 132 FRVGYSVRGTNAFLPITQCPIAAPLLWKAAVALLQLSENNIEAKLWLEAANEVEFFCNAD 191 Query: 115 DQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQ----LIGRANKTKICLDRDYVDER 170 + + A + RL +AL ++ L G A + Sbjct: 192 LSRLQMTLLCARAKPAKKNSFARLCEALQQGVPELSGAGVLTGDARGGNTNFTEGWGIAG 251 Query: 171 LTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLAR 229 L Y F Q N + +L V G GD+ +L+ G G FS VLAR Sbjct: 252 LAYRVADENYWVSRGGFFQVNRFLVEKLLPLV---CVGRSGDIAWDLFAGVGLFSRVLAR 308 Query: 230 HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHS 289 F +V AVE + R ++ + V+ S+ EF + +RE Sbjct: 309 SFAQVTAVEANPSAANDLRISLGKLGSQHRS-VQASTLEFLRGAVVQRE----------- 356 Query: 290 YRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTIERLALF 347 R I +DPPR+G ++ A P ++Y+SC+P +L RDL +L + I + L Sbjct: 357 -RPALIVLDPPRAGAGVEACELLLKLAAPAVVYVSCDPTTLARDLVVLQRDYRIAEIHLV 415 Query: 348 DQFPYTRHMECGVLLVRK 365 D FP T H+E V+L R+ Sbjct: 416 DLFPQTFHLETVVMLARR 433 >gi|210632813|ref|ZP_03297546.1| hypothetical protein COLSTE_01449 [Collinsella stercoris DSM 13279] gi|210159372|gb|EEA90343.1| hypothetical protein COLSTE_01449 [Collinsella stercoris DSM 13279] Length = 437 Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats. Identities = 77/373 (20%), Positives = 134/373 (35%), Gaps = 34/373 (9%) Query: 9 QYEQQLAEKVDRLRQMML---AFQVPNLQIFR------SEPIHYRMRAEFHIWHDGDDLY 59 +E QL K + LR + F + + YR + E H+ Sbjct: 81 SHEAQLQAKEENLRSALARIGKFSPKEVDDLMRPIRHAKDAWGYRNKIELAPVHENGKFR 140 Query: 60 HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAK-LFQIDYLTSQSDQAI 118 M + + +++D + + + R L ++ +S+ A+ Sbjct: 141 LGMHGRDASQIIKVDACPLFEKKHAKAVKAVAGALGFLGNSRDLQLERVAIRSSRRTGAL 200 Query: 119 VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYV--DERLTVAGR 176 ++ + + L DA+ A + + + + + + T Sbjct: 201 EVALWTPTGAFPRAQVSRVLGDAVRATSVVRVMSKGEKRARRVSGVEALAGEGSWTEKIG 260 Query: 177 TLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLARHFDRVL 235 R SF Q N +++ V+ A +L ++LYCG G F+L LAR + V Sbjct: 261 DETMRLSAPSFFQVNTRAAEILIDLVMEALDPQPHELGIDLYCGAGTFTLPLARRCEFVS 320 Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295 AVE P+V R N+ ++ NV ++ + D D + Sbjct: 321 AVESYGPAVRDLRRNLDIANITNVDVIGGDA------------VREFPDEDA-----DVL 363 Query: 296 FVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLSIL--STTHTIERLALFDQFP 351 VDPPR+GL + ++ + + Y+SC+P +L RDL T D FP Sbjct: 364 VVDPPRAGLAPEAIDLIASTSARDVAYVSCDPATLARDLRRFVEEGTFRPVWATPVDLFP 423 Query: 352 YTRHMECGVLLVR 364 T H E V L R Sbjct: 424 QTFHCETVVRLTR 436 >gi|229816581|ref|ZP_04446880.1| hypothetical protein COLINT_03639 [Collinsella intestinalis DSM 13280] gi|229807916|gb|EEP43719.1| hypothetical protein COLINT_03639 [Collinsella intestinalis DSM 13280] Length = 421 Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats. Identities = 85/413 (20%), Positives = 133/413 (32%), Gaps = 66/413 (15%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAF-------QVPNLQIFRSE--------------- 39 T L Y +QLA K +R++ + Sbjct: 24 GCTWLGLPYRKQLARKHTAMRELFEPLIAQFDWDARVEPVLGMGSSRESGPVTVTDTPLA 83 Query: 40 -PIHYRMRAEFHIWHDGDDL-YHIMFDQQTKERMRIDYF----MPGSLLIN-------AL 86 P +R +A D F + T + + L+N L Sbjct: 84 APRAFRHKAATPFAPAADGSVRGGFFARGTHDIVDCPACAVEAPGARELLNDVAHLATEL 143 Query: 87 MIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVT--LIYHRLLDDAWR--ECAIRLRDAL 142 I R LR + + + T +S +VT L RL + A R E L Sbjct: 144 GIPAYDEDRRCGQLRYAVLRCGWRTDESMLTLVTRSLEVDRLDELACRLIESHPELVTVA 203 Query: 143 HARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWV 202 ++ +T+I R ER+T + SF Q N + + Sbjct: 204 QNVNPRVTNAILGGQTRILAGR----ERMTDRLLDCTFEISPVSFYQVNPQQTEVLYQLA 259 Query: 203 LAATKGIQGD-LLELYCGNGNFSLVLARHFDR------VLAVEIAKPSVEAARYNIAANH 255 + D +L+ YCG+G L A + + VE V A N N Sbjct: 260 IDGMDLTGSDAVLDTYCGSGTIGLAAAAAARKQGFDIALTGVERNPEGVRDAVRNAELND 319 Query: 256 VNNVK-IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ- 313 ++ + + E+ + + +DPPR+G + Sbjct: 320 LDATSSFIARDATEYML------------EAAHRGDHVDVLVMDPPRAGSTPEFLDAASS 367 Query: 314 -AYPHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364 A I+YISCNP + RDL L + +ERL D FP+T H+E +L R Sbjct: 368 LAPRRIVYISCNPHTQVRDLEHLGRTGYRLERLTPVDLFPHTEHVETVAILTR 420 >gi|145640279|ref|ZP_01795863.1| 23S rRNA (uracil-5-)-methyltransferase [Haemophilus influenzae R3021] gi|145274865|gb|EDK14727.1| 23S rRNA (uracil-5-)-methyltransferase [Haemophilus influenzae 22.4-21] Length = 404 Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats. Identities = 89/364 (24%), Positives = 153/364 (42%), Gaps = 32/364 (8%) Query: 11 EQQLAEKVDRLRQMMLAFQVPNLQIFRS----EPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66 E Q K L + + Q F+ + YR R +W + + M +Q Sbjct: 64 EMQRKAKESALFKRLSKLQS-EPISFQPMICGDAWAYRRRVRLSLWFNPNTKQIDMGFRQ 122 Query: 67 --TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 T + + I IN L+ ++ A + + +L I+ + + + A++ L Y Sbjct: 123 KNTNDLIPIQSCEVAEPAINYLLPKLTALLEKFSAPK-QLGHIELVAADNGVAML-LRYT 180 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + L + R ++ A + ++ L +++K +++ Y D + Sbjct: 181 KNLAEIDRTLLLKF-----AEQEKLMLFLQSDKG---IEQIYGDAPYYQFSDGIKLHFDI 232 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 F Q N +N M+ L + Q D +L+L+CG GNF+L LA+ + +E Sbjct: 233 RDFIQVNRALNERMVNTALDWLELSQQDCVLDLFCGMGNFTLPLAKRVKSAVGIEGVFEM 292 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 V+ A N A N + N++ + Q+ + N+ F I +DPPRSG Sbjct: 293 VQKAAQNAARNQIKNIEFFQAD---LDQSFVEQPWANQ---------SFNKILLDPPRSG 340 Query: 304 LDDATVGMVQAY-PHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVL 361 A + + ILY+SCNP +L RD IL + IE+ A+ D FP+T H+E L Sbjct: 341 AAFALNALCELKAEKILYVSCNPATLVRDAEILCDFGYKIEKSAVIDMFPHTGHLESITL 400 Query: 362 LVRK 365 K Sbjct: 401 FTTK 404 >gi|300691812|ref|YP_003752807.1| 23S rRNA (Uracil-5-)-methyltransferase rumA (23S rRNA(M-5-U1939)-methyltransferase) [Ralstonia solanacearum PSI07] gi|299078872|emb|CBJ51533.2| 23S rRNA (Uracil-5-)-methyltransferase rumA (23S rRNA(M-5-U1939)-methyltransferase) [Ralstonia solanacearum PSI07] Length = 494 Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats. Identities = 79/385 (20%), Positives = 137/385 (35%), Gaps = 40/385 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWH--DG 55 ++ QLA K L + + YR RA + H Sbjct: 127 GCSMQHLDSRAQLAIKQRVLEDDLWHLAKLRPDVVFRPIAGPDWGYRYRARLTVRHVAAK 186 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115 + ++++ + ++AL++ + + ++ ++ QI+ Q Sbjct: 187 GGVLVGFHERKSSYVADMTSCEVLPPHVSALLVPLRELVGRLSIV-QRMPQIELAVGQDV 245 Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDAL--HARKYQIQLIGRANKTKICLDRDYVDERLTV 173 A+V R+L+ LR HA ++ +Q G + L Sbjct: 246 TALVL----RILEPLTPADEAELRAFADRHAVQFWLQPKGPDTVYPFYPLDRALTYTLPE 301 Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFD 232 G T+ ++ FTQ N IN ++ VL GD LL+L+CG GNF+L +A Sbjct: 302 FGITMPFK--PTDFTQVNHQINRVLMSRVLKLLDAQPGDRLLDLFCGIGNFTLPMATRGR 359 Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292 V+ +E ++ A N N + + F D RF Sbjct: 360 EVMGIEGSETLTTRALANAQHNGL-----------DAKTTFACRNLFEVTADDIAELGRF 408 Query: 293 KTIFVDPPRSGLDDATVGMVQ-----------AYPHILYISCNPDSLCRDLSIL--STTH 339 VDPPR G + + + I+Y+SCNP +L RD +L + Sbjct: 409 DRWLVDPPREGALAVSKALAELSQRGGEAAALLPGRIVYVSCNPATLARDAGLLVHEAGY 468 Query: 340 TIERLALFDQFPYTRHMECGVLLVR 364 + + + FP+T H+E + R Sbjct: 469 RLAGAGVVNMFPHTSHVESIAVFER 493 >gi|326563434|gb|EGE13699.1| 23S rRNA 5-methyluridine methyltransferase [Moraxella catarrhalis 12P80B1] Length = 497 Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats. Identities = 82/391 (20%), Positives = 153/391 (39%), Gaps = 39/391 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWH--DG 55 +L Q + Q+ K L+++++ I + + YR +A + + Sbjct: 115 GCSLQHWQADAQIDFKQSVLKELLIHQAGIEPDIWLKPLVGDRLGYRTKARMGVRYVAKK 174 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQS- 114 D ++ + ++ I +E + + + R + Q++ Q+ Sbjct: 175 DSALVGFRERASNFLAELNECHILDKRI-GFELENLKALITDLNARDSIPQLEIAMGQTL 233 Query: 115 ----DQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDER 170 D + R + + E +LR AR +Q+ L + + +D + Sbjct: 234 PHVPDSIKSVAVIVRHMQELDDEDLAKLRQFFAARNWQLFLQPKGADSVHRIDTEDARPT 293 Query: 171 -----------LTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYC 218 + L Y FTQ N +N M++ + +G+ +L+L+C Sbjct: 294 SLTVPPTGGLFYHLPNFELTYEFSPLDFTQVNLSVNQKMMDLASSLLNLQKGERVLDLFC 353 Query: 219 GNGNFSLVLARHFDR---VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275 G GNFSLVLAR V+ VE ++ E A+ N AN + + + +K+ TQ + Sbjct: 354 GLGNFSLVLARQVGESGFVVGVEGSEQMTERAKMNACANGIAHTEFY---AKDLTQDLSD 410 Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSI 334 + + RF + +DPPRSG + + + I+Y+SCNP +L RD Sbjct: 411 -------QPWATGNNRFDALLIDPPRSGAWEVMAYLPKFNAKRIVYVSCNPVTLARDTKA 463 Query: 335 L-STTHTIERLALFDQFPYTRHMECGVLLVR 364 L + + + D F +T H+E R Sbjct: 464 LIEAGYRLTHAGVMDMFSHTGHVESIARFER 494 >gi|254172832|ref|ZP_04879506.1| 23S rRNA (uracil-5-)-methyltransferase [Thermococcus sp. AM4] gi|214032988|gb|EEB73816.1| 23S rRNA (uracil-5-)-methyltransferase [Thermococcus sp. AM4] Length = 418 Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats. Identities = 85/377 (22%), Positives = 139/377 (36%), Gaps = 48/377 (12%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEP-IHYRMRAEFHIWHDGDDLYH 60 L Y QL K +L ++ N+ + S +R R + I G Sbjct: 75 GCLLQHLDYGDQLEFKKSKLSSILNE----NVDVIPSPKIFGHRNRIDVVISTKGIGFRR 130 Query: 61 IMFDQQTKERMRIDYFMP-----------GSLLINALMIEMMATIRLEPLLRAKLFQIDY 109 + I++ I + + + E LR + + Sbjct: 131 YGTWWD---VVDIEWCPVFGRSSKRVLKSLREFIEDHDVSLYEIGKNEGFLRYIVIREGK 187 Query: 110 LTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDE 169 T + +VT L + + E + + + +++ E Sbjct: 188 FTGELMVNLVTAPG--KLPEDFPEYFAYADSLYWSVNRTPSDVSYGEIERF-WGGEFIRE 244 Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLAR 229 L +Y NSF Q N+ V +L V G +L+LY G G F + LA+ Sbjct: 245 EL----DGTLYLIHPNSFFQTNSYGAVELLREVAKRVDGE--RVLDLYSGVGTFGVYLAK 298 Query: 230 HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHS 289 RV +EI +V+ A N N V N + ++ +++R Sbjct: 299 RGFRVEGIEINPFAVKMANRNAELNGV-NASFRVGADRDV-ESLRA-------------- 342 Query: 290 YRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCRDLSILSTTHTIERLALF 347 + T+ VDPPR+GL V +VQ P ++Y+SCNP +L RDL L +T+ + Sbjct: 343 --YDTVIVDPPRAGLHPKLVERLVQNGPEQLVYVSCNPKTLARDLDKLKRVYTVSDIIGL 400 Query: 348 DQFPYTRHMECGVLLVR 364 D FP+T H+E V L R Sbjct: 401 DMFPHTPHVEAVVELKR 417 >gi|145300354|ref|YP_001143195.1| 23S rRNA 5-methyluridine methyltransferase [Aeromonas salmonicida subsp. salmonicida A449] gi|189045732|sp|A4SRC5|RUMA_AERS4 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|142853126|gb|ABO91447.1| 23S rRNA (uracil-5-)-methyltransferase [Aeromonas salmonicida subsp. salmonicida A449] Length = 439 Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats. Identities = 85/362 (23%), Positives = 142/362 (39%), Gaps = 31/362 (8%) Query: 11 EQQLAEKVDRLRQMMLA---FQVPNLQ-IFRSEPIHYRMRAEFHIWHDGDDL--YHIMFD 64 +QQ A K L + + P L+ + E YR I D + Sbjct: 99 DQQ-AAKEAGLVSLFERLGQIKAPVLEPVLTGESRAYRRVCRLAIKFDKNGRCTRVGFRR 157 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 +Q+ + + I+ + ++AL+ + + R +L + + ++ ++ Sbjct: 158 RQSNDLVEIEGCPVLAEPLSALIAPLRECLNRLKSQR-ELGHAELIQAEQGIMMLLRHTG 216 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 R E L A A+ I L +A +I ++ G +L + Sbjct: 217 RP-----NEADRALLVAF-AKSQGIDLYLQAADERIEPLHQVFQPSYSLDGLSLAF--AP 268 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 F Q N IN M+ LA + D +L+L+CG GNF+L LAR V+ VE Sbjct: 269 GDFIQVNGPINQSMVAQALAWLGASKDDKVLDLFCGIGNFTLPLARQAREVVGVEGDLAM 328 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 V A N N ++N + + M RE F + +DP R G Sbjct: 329 VARAEENARRNGIDNARFYKADLSGDIVGMSWARE------------GFDLVLLDPARPG 376 Query: 304 LDDATVGMVQAYP-HILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVL 361 + +V+ P ++Y+SCNP +L RD +L + + RL + D FP+T H+E L Sbjct: 377 ALEVMGHVVKLSPKRVVYVSCNPVTLARDSQVLVKGGYRLVRLGMLDMFPHTGHLESMAL 436 Query: 362 LV 363 Sbjct: 437 FE 438 >gi|291165734|gb|EFE27782.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Filifactor alocis ATCC 35896] Length = 547 Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats. Identities = 78/404 (19%), Positives = 134/404 (33%), Gaps = 57/404 (14%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIW---HD 54 +LL YE+QL K L + Q I + Y+ + EF D Sbjct: 79 GCSLLPISYEKQLELKQHALSDWFVKKGHEEFQEIEVIGSPDSREYKNKMEFTFGNEQKD 138 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIE-----------MMATIRLEPLLRAK 103 G + ++ + ++ ++ +R E LR Sbjct: 139 GQLTLGMHMTNRSNSIVFVEDCRIVDEDYRQILKATVSYFRKHNLPFYHIMRREGYLRHL 198 Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAI---------RLRDALHARKYQIQLIGR 154 + + T +V L+ LD +E R+ LH Sbjct: 199 VLRKGKNTG---DILVNLVTTTQLDFDLKEYCSLLLDLSLDGRITGILHTENDSFSDAVI 255 Query: 155 ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA-----TKGI 209 K Y E + ++ SF Q N + V Sbjct: 256 PEKINCL----YGTELFEDKVLGMNFKISSFSFFQTNTKGAEILYSKVREMVKKVLEHRQ 311 Query: 210 QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269 + + +LY G G ++++ +V+A+E+ + +VE A+ N N V NV+ + Sbjct: 312 EETIFDLYSGTGTIGILVSTIAKKVIAIELIEEAVEMAKENAKMNGVENVEFIAGDVA-- 369 Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDS 327 K++ + I +DPPRSG+ +G V + +I+Y+SCNP Sbjct: 370 -------------KEVGKREEKPYLIILDPPRSGMHPKAIGDVLNFEAENIIYVSCNPKI 416 Query: 328 LCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRKPSGWH 370 +L + + + DQFP T H E LL + H Sbjct: 417 FAEELHLFKEKGYQVMDKVGVDQFPNTNHCETVALLSKLDVDKH 460 >gi|124002028|ref|ZP_01686882.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Microscilla marina ATCC 23134] gi|123992494|gb|EAY31839.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Microscilla marina ATCC 23134] Length = 481 Score = 217 bits (552), Expect = 2e-54, Method: Composition-based stats. Identities = 77/381 (20%), Positives = 134/381 (35%), Gaps = 50/381 (13%) Query: 23 QMMLAFQVPN--LQIFRSEPIHYRMRAEF----HIWHDGD-----------DLYHIMFDQ 65 + + +P + + +YR + EF W + + + Sbjct: 108 ERIGKLDLPEVKPILGSAHTQYYRNKLEFTFSNRRWMTKEEIATEEKIQDPNALGFHIPK 167 Query: 66 QTKERMRIDYFMPGSLLINALMIEMMATIRLEPLL-------RAKLFQIDYLTSQSDQAI 118 + + + ID+ N + + + L L + + S + Sbjct: 168 RFDKILDIDHCYLQPDPSNKIRLTLKKYAVDNELTFFDQKNNEGFLRNVVIRNANSGDLM 227 Query: 119 VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANK-------TKICLDRDYVDER- 170 V +I+ + L + +I K+ ++ E Sbjct: 228 VIMIFFYDDQNLIVPLLEHLHSEVPEITSLQYIINPKQNDAYQDLPVKLFAGEPHITETM 287 Query: 171 --LTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLV 226 L TL +R SF Q NA L V ++GD + +LY G G + Sbjct: 288 PSLDEGKPTLKFRVGAKSFYQTNASQAYE-LYKVAGEMADLKGDEVVYDLYTGTGTIANF 346 Query: 227 LARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDID 286 +A +V+ +E ++E A+ N N ++N + EF L Sbjct: 347 IAHKAKKVIGLEYVPMAIENAKVNSEINSIDNTSFFAGDIQHLLD-----EEFVEL---- 397 Query: 287 IHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILSTTHTIERL 344 I DPPRSG+ V M++ I+Y+SCNP + RDL++L+ + I + Sbjct: 398 --HGHPNVIITDPPRSGMHADVVEMLKKASPDKIVYVSCNPATQARDLAMLADEYDITAV 455 Query: 345 ALFDQFPYTRHMECGVLLVRK 365 D FP+T H+E VLL RK Sbjct: 456 QPVDMFPHTHHVENVVLLERK 476 >gi|255320868|ref|ZP_05362042.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Acinetobacter radioresistens SK82] gi|262380239|ref|ZP_06073394.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Acinetobacter radioresistens SH164] gi|255302037|gb|EET81280.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Acinetobacter radioresistens SK82] gi|262298433|gb|EEY86347.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Acinetobacter radioresistens SH164] Length = 463 Score = 217 bits (552), Expect = 3e-54, Method: Composition-based stats. Identities = 84/379 (22%), Positives = 151/379 (39%), Gaps = 35/379 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWH--DG 55 +L ++Q+ K D L + F + RS YR +A + Sbjct: 98 GCSLQHMHPDEQIRFKQDVLASHLKHFAAIEPEEWLPALRSTREDYRRKARIGVRFLAKE 157 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115 L ++QT + I + + E+ + +A + I+ D Sbjct: 158 QKLKFGFRERQTNHLVSIQTCKVLDRAMAGHLNEL-QLLLESLTAKAAIGHIELAMGDHD 216 Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD----YVDERL 171 A+V R ++ + +L +R++Q+ L ++ +D+ Y+ RL Sbjct: 217 IALVI----RNIEKLPQVDVNQLTQYALSRQWQLYLQPAGPESLYRVDQPDASKYLHYRL 272 Query: 172 TVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARH 230 + FTQ N+ +N M+ G+ +L+L+CG GNFSL LAR Sbjct: 273 EEFDIDFAF--SPLDFTQVNSTVNSQMVSLACNLLNLQPGERVLDLFCGLGNFSLPLARC 330 Query: 231 FDR---VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDI 287 V+AVE ++ V+ N +N + NV+ S++ T+ Sbjct: 331 VGETGQVIAVEGSEDMVKRGTENARSNKLLNVRFY---SQDLTKDFSSH---------SW 378 Query: 288 HSYRFKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSIL-STTHTIERLA 345 F + +DPPR+G ++ + I+Y+SCNP +L RD IL + +++ Sbjct: 379 AKQGFDALLIDPPRAGAEEVMHYLPNFNAKRIVYVSCNPATLARDAGILVEHGYRLKKAG 438 Query: 346 LFDQFPYTRHMECGVLLVR 364 + D F +T H+E VL + Sbjct: 439 VMDMFTHTGHVESIVLFEK 457 >gi|325577293|ref|ZP_08147777.1| 23S rRNA (uracil-5-)-methyltransferase [Haemophilus parainfluenzae ATCC 33392] gi|325160875|gb|EGC72996.1| 23S rRNA (uracil-5-)-methyltransferase [Haemophilus parainfluenzae ATCC 33392] Length = 436 Score = 217 bits (552), Expect = 3e-54, Method: Composition-based stats. Identities = 89/362 (24%), Positives = 153/362 (42%), Gaps = 31/362 (8%) Query: 11 EQQLAEKVDRLRQMMLAFQVPNLQIFR---SEPIHYRMRAEFHI-WHDGDDLYHIMFDQQ 66 E Q K L + Q +Q+ E YR R + W+ + + F Q+ Sbjct: 98 EMQRKAKEKALFSRLSKLQAEPIQLMPMICGEQWGYRRRVRLSLLWNAKNKTIEMGFRQK 157 Query: 67 -TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHR 125 + + + I + IN L+ ++ A + + +L ++ +++++ A++ L Y Sbjct: 158 NSNQLVSIQQCLVAEPAINDLIPKLTALWAQYSVPK-QLGHVELVSAENGVAML-LRYKG 215 Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIEN 185 L + R + ++A +Q + I L + R L + Sbjct: 216 NLAETDRTLLLEF-ARVNAVNLFLQ-----DDQCIQLAHGEMPYYSLDDIR-LSFDI--R 266 Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 F Q N +N+ M+E L Q D +L+L+CG GNF+L LA+ + +E V Sbjct: 267 DFIQVNTHLNLQMVETALDWLDLNQDDHVLDLFCGMGNFTLPLAKRVKSAVGIEGVFDMV 326 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 + A+ N NH+ NV+ + QA + F I +DPPRSG Sbjct: 327 QKAQTNAQFNHIENVEFYQAD---LDQAFS---------EQPWAKQHFNKILLDPPRSGA 374 Query: 305 DDATVGMVQAY-PHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLL 362 A + + ILY+SCNP +L RD IL + + I + A+ D FP+T H+E L Sbjct: 375 AFALNALCELCAEKILYVSCNPATLVRDAEILRSFGYRIIKTAMIDMFPHTSHLESVTLF 434 Query: 363 VR 364 ++ Sbjct: 435 IK 436 >gi|291528120|emb|CBK93706.1| 23S rRNA m(5)U-1939 methyltransferase [Eubacterium rectale M104/1] Length = 468 Score = 217 bits (552), Expect = 3e-54, Method: Composition-based stats. Identities = 83/405 (20%), Positives = 145/405 (35%), Gaps = 61/405 (15%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIF--------RSEPIHYRMRAEFHIW- 52 T YE+QL K+ ++++++ + + YR + EF Sbjct: 80 GCTYQTVPYEKQLDMKLTQVKKLISDAIGTEKESGYEFIGIHGSPKKSEYRNKMEFSFGD 139 Query: 53 -HDGDDLYHIMFDQQTK-ERMRIDYFMPGSLLINALMIEMMATIRLE-----------PL 99 + L M + + + + + ++ + Sbjct: 140 EYKDGPLALGMHKRGSFYDLVTVSDCQIVDEDFRTILKATLDYFSKNNIPYFHRATHKGY 199 Query: 100 LRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAW-----------RECAIRLRDALHARKYQ 148 LR L + T + +VT ++ R R + LH + Sbjct: 200 LRHLLVRKATKTGEIIVDLVTTTQTEGFNEEELLAGFRYALLTRHYDGRFKGVLHTQNDS 259 Query: 149 IQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKG 208 + + + T + Y E L L ++ SF Q N+ + E G Sbjct: 260 VADVVKNEGTDVLYGDSYFYEELL----GLKFKITPFSFFQTNSLGAEVLYETAREFILG 315 Query: 209 IQGD------LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262 D + +LY G G + ++A V+ VEI + +V AA+ N A N ++N K + Sbjct: 316 DDKDSLNGKTVYDLYSGTGTIAQLMAPVCKEVVGVEIVEEAVCAAKENAALNGLDNCKFI 375 Query: 263 RMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILY 320 LK +D + I +DPPR G+ +G + Y +++Y Sbjct: 376 AGDV---------------LKVLDEIEEKPDYIILDPPRDGIHPKAIGKIIEYGVENMVY 420 Query: 321 ISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364 ISC P SL RDL I + + +E++ D FP T H+E V L R Sbjct: 421 ISCKPTSLARDLQIFMARGYRVEKICCVDMFPNTYHIETIVALHR 465 >gi|253988311|ref|YP_003039667.1| 23S rRNA 5-methyluridine methyltransferase [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253779761|emb|CAQ82922.1| 23S rRNA (uracil-5-)-methyltransferase [Photorhabdus asymbiotica] Length = 443 Score = 217 bits (552), Expect = 3e-54, Method: Composition-based stats. Identities = 79/364 (21%), Positives = 143/364 (39%), Gaps = 29/364 (7%) Query: 13 QLAEKVDRLRQMM---LAFQVPNLQIFRSEPIHYRMRAEFHI-WHDGDDLYHIMFDQ-QT 67 Q K L ++ V + S YR RA + +H + F Q Q+ Sbjct: 100 QRESKASVLEHLIWRETGVTVSAKPVILSPEYGYRRRARLGLQYHMKQRQLVMGFRQNQS 159 Query: 68 KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLL 127 E + + + L+ + + + +L ++ + + + I+ R L Sbjct: 160 NEIVAVKRCPVLQPELEQLLQPLSQCLSNLKAAK-RLGHVELVLADNGPLIIL----RHL 214 Query: 128 DDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSF 187 D E +L A ++ + A++T + + + V G L++ F Sbjct: 215 DPLKGEDKEKLCTF--AVQHHAAVYLMADETTLEPLNNSPEPWYQVDGLKLVF--SPRDF 270 Query: 188 TQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246 Q N +N M+ + D +L+L+CG GNF+L +AR V+ VE V Sbjct: 271 IQVNETVNQQMVAQAMEWLDLQPNDRVLDLFCGMGNFTLPIARKVQAVVGVEGVATLVAN 330 Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306 +YN N+++N+ + + + F + +DP R+G Sbjct: 331 GQYNAKLNNLDNISFYHENLEA------------NIHQQPWAKLGFNKVLLDPARAGAAG 378 Query: 307 ATVGMVQAYP-HILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 +V+ P ++Y+SCNP +L RD +L + I + + D FP+T H+E VL R Sbjct: 379 VMSHIVKLAPEKVVYVSCNPTTLARDSKTLLEAGYHIISVRMLDMFPHTGHLESMVLFSR 438 Query: 365 KPSG 368 G Sbjct: 439 IDCG 442 >gi|309782327|ref|ZP_07677054.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Ralstonia sp. 5_7_47FAA] gi|308918945|gb|EFP64615.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Ralstonia sp. 5_7_47FAA] Length = 448 Score = 217 bits (552), Expect = 3e-54, Method: Composition-based stats. Identities = 79/386 (20%), Positives = 136/386 (35%), Gaps = 42/386 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWH--DG 55 ++ Q+A K L + + YR RA + H Sbjct: 81 GCSMQHLDSRAQVAIKQRVLEDDLWHLAKLRPDVVFRPIAGPDWGYRYRARLTVRHVAAK 140 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115 + ++++ + ++AL++ + + ++ ++ QI+ Q Sbjct: 141 GGVLVGFHERKSSYVADMTSCEVLPPHVSALLVPLRELVGRLSIV-QRMPQIELAVGQDV 199 Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC---LDRDYVDERLT 172 A+V R L+ E LR Q L + T LDR + L Sbjct: 200 TALVL----RNLEPITAEDEAELRAFADHHNIQFWLQPKGPDTVYPFYPLDR-TLTYTLP 254 Query: 173 VAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHF 231 G T+ ++ FTQ N IN ++ L GD LL+L+CG GNF+L +A Sbjct: 255 EFGITMPFK--PTDFTQVNHQINRVLMSRALKLLDAQPGDRLLDLFCGIGNFTLPMATRA 312 Query: 232 DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291 V+ +E ++ A N N + + F D + Sbjct: 313 REVMGIEGSEALTTRALANAQHNGL-----------DAKTKFACRNLFEVTADDIAALGK 361 Query: 292 FKTIFVDPPRSGLDDATVGMVQ-----------AYPHILYISCNPDSLCRDLSIL--STT 338 F VDPPR G + + + I+Y+SCNP +L RD +L Sbjct: 362 FDRWLVDPPREGALAVSKALAELSQRGGEEADLLPKRIVYVSCNPATLARDAGLLVHEAG 421 Query: 339 HTIERLALFDQFPYTRHMECGVLLVR 364 + + + + FP+T H+E + R Sbjct: 422 YRLAGAGVVNMFPHTSHVESMAVFER 447 >gi|330445809|ref|ZP_08309461.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328490000|dbj|GAA03958.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 380 Score = 217 bits (552), Expect = 3e-54, Method: Composition-based stats. Identities = 85/388 (21%), Positives = 144/388 (37%), Gaps = 46/388 (11%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVP-NLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60 S L Y QQ+ +K D LR + L S YR +A+ + + Sbjct: 13 SCPLASTSYAQQIKQKDDALRSLFSEHHPQQWLAPVESAETGYRNKAKMVVLGAAHEPCL 72 Query: 61 IMFDQQT--KERMRIDYF----MPGS---------LLINALMIEMMATIRLEPLLRAKLF 105 + Q K + P I I ++ + L+ L Sbjct: 73 GIQTQSALEKTIKPVSLCRCSLYPADMQDLLLYIEQWIRRAGIPPYNLVKKKGELKFVLL 132 Query: 106 QIDYLTSQSDQAIVTLIYHRLLD--DAWRECAIRLRDALHARKYQIQLIGRAN---KTKI 160 T + V H ++ + + A+ IQ + A + +I Sbjct: 133 TRSENTGEFMLRFVMR-SHTAIERIENNLADLLAAFPAIKVVSVNIQPVHMARLEGEEEI 191 Query: 161 CL-DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYC 218 L D Y+ E+ + SF Q N + + ++ + +L+C Sbjct: 192 FLTDAHYLLEQFNHVPLVVR----PKSFFQTNPKVAERLYATAKNWVSEVKPASMWDLFC 247 Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278 G G F+L A ++V +EI ++ +A+ + VNN+ + S FTQ+ E Sbjct: 248 GVGGFALHCAEEVEQVTGIEIEPEAIASAKRSAEMMGVNNLDFAALDSTSFTQSNEAAPE 307 Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILS 336 + V+PPR G+ +A + A HI+Y SCNP +L +DL+ L+ Sbjct: 308 L---------------VLVNPPRRGIGEALCQQLNTFAPKHIIYSSCNPQTLEKDLTRLT 352 Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVR 364 + + + FD FP+T H+E VLL R Sbjct: 353 -GYKVMKFQWFDMFPHTDHVEAMVLLER 379 >gi|237809485|ref|YP_002893925.1| 23S rRNA 5-methyluridine methyltransferase [Tolumonas auensis DSM 9187] gi|237501746|gb|ACQ94339.1| RNA methyltransferase, TrmA family [Tolumonas auensis DSM 9187] Length = 440 Score = 217 bits (552), Expect = 3e-54, Method: Composition-based stats. Identities = 71/361 (19%), Positives = 133/361 (36%), Gaps = 28/361 (7%) Query: 13 QLAEKVDRLRQMM---LAFQVPNLQ-IFRSEPIHYRMRAEFHIWHDGDDL--YHIMFDQQ 66 Q K ++++ +P I S P YR + +D + +Q Sbjct: 100 QCQAKQQGVQRLFRQLAKIDLPAPLWIESSAPQAYRRVCRLAVKYDKNKRCVLVGFRQKQ 159 Query: 67 TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL 126 ++ + I+ + ++AL++ + I R + I+ ++S A++ R Sbjct: 160 SQALVEINSCPVLTAALSALIVPLRTLINELSSARD-VGHIELYETESGLAMLLRHNGRP 218 Query: 127 LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS 186 + L + L + + L Sbjct: 219 P----VKDKELLLAFALQHDCALYLQTTGYPEPLADVKPSF-----YQLDGLRLYFQPGD 269 Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245 F Q N +N ++ +V D +L+L+CG GNF+L LAR V +E V+ Sbjct: 270 FLQVNPQVNQRLVNYVREWLAPTATDNVLDLFCGIGNFTLPLAREAASVTGIEGVDEMVQ 329 Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD 305 A +N N + N R + + + + + +DP R+G + Sbjct: 330 RATHNAEQNQLVNTGFHRADLTKMAE----------YANAGWQQQCYDLVLLDPGRTGAE 379 Query: 306 DATVGMVQ-AYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 + + I+Y+SCNP + RD ++L +T+++ L D FP+T H+E L R Sbjct: 380 AVMPWLAKSGARRIVYVSCNPVTAARDCALLQPGYTLKQWGLLDMFPHTGHVESLFLFER 439 Query: 365 K 365 K Sbjct: 440 K 440 >gi|225024584|ref|ZP_03713776.1| hypothetical protein EIKCOROL_01461 [Eikenella corrodens ATCC 23834] gi|224942735|gb|EEG23944.1| hypothetical protein EIKCOROL_01461 [Eikenella corrodens ATCC 23834] Length = 430 Score = 217 bits (552), Expect = 3e-54, Method: Composition-based stats. Identities = 78/370 (21%), Positives = 130/370 (35%), Gaps = 25/370 (6%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSE----PIHYRMRAEFHIWHDGDD 57 TL Q+A K L + Q YR RA H Sbjct: 74 GCTLQHVHSNVQVAYKQRILEDQLQRLGKVRPQYLLPPIYGQAWGYRYRARLSAHHSQGR 133 Query: 58 LYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQA 117 + + + I + + + A ++ L + I+ S + + Sbjct: 134 TTLGFQSRSSHRIVDIRQCPILAPQLANQLSNTRALLQQLNRLHTPVRTIELHHSPAANS 193 Query: 118 IVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRT 177 + H L A R I+ +L A + + D + L T Sbjct: 194 LTLHTEH--LPKAARAHLIQHAQSLPANWHIWLQTPHRPAQPLLPDSPQLSYSLPEYALT 251 Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLA 236 L YR FTQ N N+ ++ + + G+ + +L+CG GNFSL +A +V+ Sbjct: 252 LPYR--PGDFTQVNPTANILLVARAIQLLQPQPGERIADLFCGLGNFSLPIAAAGAQVIG 309 Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR-FKTI 295 +E + E A N NH+ + + S + Q + + + F I Sbjct: 310 IEGSPELTERASQNARLNHL--AERAQFHSADLFQT----------TEHTVAGWGYFDKI 357 Query: 296 FVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPY 352 +DPPRSG + Y I+Y+SCNP + RD ++L S + + + FP Sbjct: 358 LLDPPRSGAYALVQALHAPYLPRRIVYVSCNPATFARDAAVLVSKGYRFRNAGIVNMFPQ 417 Query: 353 TRHMECGVLL 362 T H+E Sbjct: 418 TAHVETVGCF 427 >gi|167902391|ref|ZP_02489596.1| 23S rRNA 5-methyluridine methyltransferase [Burkholderia pseudomallei NCTC 13177] Length = 465 Score = 217 bits (552), Expect = 3e-54, Method: Composition-based stats. Identities = 80/383 (20%), Positives = 138/383 (36%), Gaps = 39/383 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWH--DG 55 ++ Q+A K L + + YR RA + H Sbjct: 101 GCSMQHLDMRAQVAIKQRVLEDNLWHLAKLRAEAMFAPIHGPSWGYRYRARLTVRHVAKK 160 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115 + ++++ + ++A+++ + + +R ++ QI+ Sbjct: 161 GGVLVGFHEKKSSYVADMTSCEVLPPHVSAMLVPLRRLVEQL-SIRDRMPQIELAVGARV 219 Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD--RDYVDERLTV 173 A+V R+L+ LR+ + Q L + T +D L Sbjct: 220 TALVL----RVLEPINAADEALLREFADTHRVQFWLQPKGPDTVAPFYPLDAQLDYTLPE 275 Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFD 232 G + ++ FTQ N IN ++ L +GD +L+L+CG GNF+L LAR Sbjct: 276 FGIRMPFK--PTDFTQVNHQINRVLVGRALRLLAPERGDRVLDLFCGIGNFTLPLARLAR 333 Query: 233 RVLAVEIAKPSVEAARYNIAANHVN-NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291 V+ +E + A N N V+ + + E T R Sbjct: 334 EVVGIEGSDALTARALENAKENGVDGHTSFACRNLFEVTADDLRAL------------GA 381 Query: 292 FKTIFVDPPRSGL---DDATVGMVQ-----AYPHILYISCNPDSLCRDLSIL--STTHTI 341 F VDPPR G A + Q I+Y+SCNP +L RD +L + + Sbjct: 382 FDKFLVDPPREGALAVSKALAEIAQSGAGPLPARIVYVSCNPSTLARDAGLLVHEAGYRL 441 Query: 342 ERLALFDQFPYTRHMECGVLLVR 364 + + + FP+T H+E L R Sbjct: 442 KGAGVVNMFPHTSHVESIALFER 464 >gi|167562543|ref|ZP_02355459.1| 23S rRNA 5-methyluridine methyltransferase [Burkholderia oklahomensis EO147] gi|167569726|ref|ZP_02362600.1| 23S rRNA 5-methyluridine methyltransferase [Burkholderia oklahomensis C6786] Length = 465 Score = 217 bits (552), Expect = 3e-54, Method: Composition-based stats. Identities = 80/383 (20%), Positives = 140/383 (36%), Gaps = 39/383 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWH--DG 55 ++ Q+A K L + + YR RA + H Sbjct: 101 GCSMQHLDMRAQVAIKQRVLEDNLWHLAKLRAEAMFAPIHGPSWGYRYRARLTVRHVAKK 160 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115 + ++++ + ++A+++ + + +R ++ QI+ Sbjct: 161 GGVLVGFHEKKSSYVADMTSCEVLPPHVSAMLVPLRRLVEQL-SIRDRMPQIELAVGSQV 219 Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYV--DERLTV 173 A+V R+L+ LR+ + Q L + T V D L Sbjct: 220 TALVL----RVLEPINAADEALLREFADTHRVQFWLQPKGPDTVAPFYPLDVRLDYTLPE 275 Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFD 232 G + ++ FTQ N IN ++ L +GD +L+L+CG GNF+L LAR Sbjct: 276 YGIRMPFK--PTDFTQVNHQINRVLVGRALRLLAPSRGDRVLDLFCGIGNFTLPLARLAR 333 Query: 233 RVLAVEIAKPSVEAARYNIAANHVN-NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291 V+ +E ++ A N N V+ + + E T R Sbjct: 334 EVVGIEGSETLTSRALENAKENGVDGHTSFACRNLFEVTADDLRAL------------GA 381 Query: 292 FKTIFVDPPRSGL---DDATVGMVQ-----AYPHILYISCNPDSLCRDLSIL--STTHTI 341 F + +DPPR G A + Q I+Y+SCNP +L RD +L + + Sbjct: 382 FDKVLIDPPREGALAVSKALAEIAQSGVGPLPARIVYVSCNPSTLARDAGLLVHEAGYRL 441 Query: 342 ERLALFDQFPYTRHMECGVLLVR 364 + + + FP+T H+E L R Sbjct: 442 KGAGVVNMFPHTSHVESIALFER 464 >gi|262374293|ref|ZP_06067569.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Acinetobacter junii SH205] gi|262310851|gb|EEY91939.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Acinetobacter junii SH205] Length = 469 Score = 217 bits (552), Expect = 3e-54, Method: Composition-based stats. Identities = 82/377 (21%), Positives = 153/377 (40%), Gaps = 31/377 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWHDGDD 57 +L +QQ+ K + L+ + F + RS YR RA + + Sbjct: 98 GCSLQHIHPDQQIVLKQNVLKSHLEHFAGLQPEEWLAPIRSVKTDYRRRARIGVRYIPKQ 157 Query: 58 LYHIMFDQQTK--ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115 +M ++ I +++ ++E+ T+ +A + I+ + Sbjct: 158 NRLVMGFREHHSNHLTDIQQCKVLDQVLSDSLVELK-TLLESLTGKAHIGHIELAMGDDE 216 Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175 +++ R LD+ +LR + +Q+ + + +D ++ RL + Sbjct: 217 VSLLI----RHLDELNVSDVNQLRQFTLLKGWQLYFQSKGIDSLHRVDDEHAPMRLHYSL 272 Query: 176 RTLI--YRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFD 232 + FTQ N+ +N M++ +G+ +L+L+CG GNFSL LAR Sbjct: 273 EDFKVKFAFSPLDFTQVNSHVNARMVQLACELLDLKEGERVLDLFCGLGNFSLPLARCVG 332 Query: 233 ---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHS 289 RV+ VE + VE A N AN++ S++ T+ Sbjct: 333 ETGRVIGVEASDEMVERATENAQANYLTQASFF---SQDLTKDFS---------HHSWAK 380 Query: 290 YRFKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSILST-THTIERLALF 347 F + +DPPRSG + + I+Y+SCNP +L RD +L+ + +++ A+ Sbjct: 381 QGFDALLIDPPRSGAYEVMQYVPNFGAKRIVYVSCNPSTLARDAGVLAQYGYQLKKAAVM 440 Query: 348 DQFPYTRHMECGVLLVR 364 D F +T H+E L + Sbjct: 441 DMFTHTEHVESIALFEK 457 >gi|284009169|emb|CBA76214.1| 23S rRNA (uracil-5-)-methyltransferase [Arsenophonus nasoniae] Length = 466 Score = 217 bits (552), Expect = 3e-54, Method: Composition-based stats. Identities = 75/363 (20%), Positives = 141/363 (38%), Gaps = 25/363 (6%) Query: 13 QLAEKVDRLRQMML---AFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69 Q A KV RL + V +L + YR RA F + + + M +Q + Sbjct: 120 QRAAKVSRLEYLFQCETGRAVKSLPVIAGSEYGYRRRARFGLHYQHAERRLRMGFRQNQS 179 Query: 70 RMRIDY--FMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLL 127 + ++ + L++ + + ++ L ++ + + + +++ R L Sbjct: 180 NVLVELKMCPVLQPELEKLLLPVADCLNKLAAVKH-LGHVELVNADNGVSVIL----RHL 234 Query: 128 DDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSF 187 + + L + + L+ + K + D + + +F Sbjct: 235 KPLATDDKMLLTAFARSYNLNVYLVDNSAKQLKLVSSASNDSDPYYSIENVKLTFDPQNF 294 Query: 188 TQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246 Q N IN M+ L D +L+L+CG GNF+L +A H V+ VE V Sbjct: 295 IQVNPEINKKMVAQALDWLALEPKDRVLDLFCGMGNFTLPIACHVHSVVGVEGVTELVAQ 354 Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306 RYN + N + N + + + F I +DP R+G Sbjct: 355 GRYNASLNRLTNAEFYQADLELAID------------CQPWAKMGFNKILLDPARAGAIG 402 Query: 307 ATVGMVQAYP-HILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 +++ P ++YISCNP +L +D +L+ ++ + + + D FP+T H+E L R Sbjct: 403 VMSHIIKLKPERVVYISCNPTTLVKDSKQLLTASYQLMSVRMLDMFPHTSHLESMALFCR 462 Query: 365 KPS 367 S Sbjct: 463 DSS 465 >gi|326578005|gb|EGE27869.1| 23S rRNA 5-methyluridine methyltransferase [Moraxella catarrhalis O35E] Length = 497 Score = 216 bits (551), Expect = 3e-54, Method: Composition-based stats. Identities = 82/391 (20%), Positives = 153/391 (39%), Gaps = 39/391 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWH--DG 55 +L Q + Q+ K L+++++ I + + YR +A + + Sbjct: 115 GCSLQHWQADAQIDFKQSVLKELLIHQAGIEPDIWLKPLVGDRLGYRTKARMGVRYVAKK 174 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQS- 114 D ++ + ++ I +E + + + R + Q++ Q+ Sbjct: 175 DSALVGFRERASNFLAELNECHILDKRI-GFELENLKALITDLNARDSIPQLEIAMGQTL 233 Query: 115 ----DQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDER 170 D + R + + E +LR AR +Q+ L + + +D + Sbjct: 234 PHVPDSIKSVAVIVRHMQELDDEDLAKLRQFFAARNWQLFLQPKGVDSVHRIDTEDARPT 293 Query: 171 -----------LTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYC 218 + L Y FTQ N +N M++ + +G+ +L+L+C Sbjct: 294 SLTVPPTGGLFYHLPNFDLTYEFSPLDFTQVNLSVNQKMMDLASSLLNLQKGERVLDLFC 353 Query: 219 GNGNFSLVLARHFDR---VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275 G GNFSLVLAR V+ VE ++ E A+ N AN + + + +K+ TQ + Sbjct: 354 GLGNFSLVLARQVGESGFVVGVEGSEQMTERAKMNACANGIAHTEFY---AKDLTQDLSD 410 Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSI 334 + + RF + +DPPRSG + + + I+Y+SCNP +L RD Sbjct: 411 -------QPWATGNNRFDALLIDPPRSGAWEVMAYLPKFNAKRIVYVSCNPVTLARDTKA 463 Query: 335 L-STTHTIERLALFDQFPYTRHMECGVLLVR 364 L + + + D F +T H+E R Sbjct: 464 LIEAGYRLTHAGVMDMFSHTGHVESIARFER 494 >gi|53719142|ref|YP_108128.1| 23S rRNA 5-methyluridine methyltransferase [Burkholderia pseudomallei K96243] gi|53723555|ref|YP_103010.1| 23S rRNA 5-methyluridine methyltransferase [Burkholderia mallei ATCC 23344] gi|124385031|ref|YP_001026066.1| 23S rRNA 5-methyluridine methyltransferase [Burkholderia mallei NCTC 10229] gi|126448076|ref|YP_001080666.1| 23S rRNA 5-methyluridine methyltransferase [Burkholderia mallei NCTC 10247] gi|162210058|ref|YP_333755.2| 23S rRNA 5-methyluridine methyltransferase [Burkholderia pseudomallei 1710b] gi|167738259|ref|ZP_02411033.1| 23S rRNA 5-methyluridine methyltransferase [Burkholderia pseudomallei 14] gi|167815449|ref|ZP_02447129.1| 23S rRNA 5-methyluridine methyltransferase [Burkholderia pseudomallei 91] gi|167845400|ref|ZP_02470908.1| 23S rRNA 5-methyluridine methyltransferase [Burkholderia pseudomallei B7210] gi|167910633|ref|ZP_02497724.1| 23S rRNA 5-methyluridine methyltransferase [Burkholderia pseudomallei 112] gi|254178072|ref|ZP_04884727.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia mallei ATCC 10399] gi|254189063|ref|ZP_04895574.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia pseudomallei Pasteur 52237] gi|254297423|ref|ZP_04964876.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia pseudomallei 406e] gi|254358296|ref|ZP_04974569.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia mallei 2002721280] gi|90126210|sp|Q62JV9|RUMA_BURMA RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|91207803|sp|Q3JRP8|RUMA_BURP1 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|97273505|sp|Q63UT8|RUMA_BURPS RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|52209556|emb|CAH35509.1| putative 23S rRNA (uracil-5-)-methyltransferase [Burkholderia pseudomallei K96243] gi|52426978|gb|AAU47571.1| ribosomal RNA large subunit (uracil-5-)-methyltransferase [Burkholderia mallei ATCC 23344] gi|124293051|gb|ABN02320.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia mallei NCTC 10229] gi|126240946|gb|ABO04039.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia mallei NCTC 10247] gi|148027423|gb|EDK85444.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia mallei 2002721280] gi|157807232|gb|EDO84402.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia pseudomallei 406e] gi|157936742|gb|EDO92412.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia pseudomallei Pasteur 52237] gi|160699111|gb|EDP89081.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia mallei ATCC 10399] Length = 465 Score = 216 bits (551), Expect = 3e-54, Method: Composition-based stats. Identities = 80/383 (20%), Positives = 138/383 (36%), Gaps = 39/383 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWH--DG 55 ++ Q+A K L + + YR RA + H Sbjct: 101 GCSMQHLDMRAQVAIKQRVLEDNLWHLAKLRAEAMFAPIHGPSWGYRYRARLTVRHVAKK 160 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115 + ++++ + ++A+++ + + +R ++ QI+ Sbjct: 161 GGVLVGFHEKKSSYVADMTSCEVLPPHVSAMLVPLRRLVEQL-SIRDRMPQIELAVGARV 219 Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD--RDYVDERLTV 173 A+V R+L+ LR+ + Q L + T +D L Sbjct: 220 TALVL----RVLEPINAADEALLREFADTHRVQFWLQPKGPDTVAPFYPLDAQLDYTLPE 275 Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFD 232 G + ++ FTQ N IN ++ L +GD +L+L+CG GNF+L LAR Sbjct: 276 FGIRMPFK--PTDFTQVNHQINRVLVGRALRLLAPERGDRVLDLFCGIGNFTLPLARLAR 333 Query: 233 RVLAVEIAKPSVEAARYNIAANHVN-NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291 V+ +E + A N N V+ + + E T R Sbjct: 334 EVVGIEGSDALTARALENAKENGVDGHTSFACRNLFEVTADDLRAL------------GA 381 Query: 292 FKTIFVDPPRSGL---DDATVGMVQ-----AYPHILYISCNPDSLCRDLSIL--STTHTI 341 F VDPPR G A + Q I+Y+SCNP +L RD +L + + Sbjct: 382 FDKFLVDPPREGALAVSKALAEIAQSGAGPLPARIVYVSCNPSTLARDAGLLVHEAGYRL 441 Query: 342 ERLALFDQFPYTRHMECGVLLVR 364 + + + FP+T H+E L R Sbjct: 442 KGAGVVNMFPHTSHVESIALFER 464 >gi|206896070|ref|YP_002247852.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Coprothermobacter proteolyticus DSM 5265] gi|206738687|gb|ACI17765.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Coprothermobacter proteolyticus DSM 5265] Length = 438 Score = 216 bits (551), Expect = 3e-54, Method: Composition-based stats. Identities = 87/385 (22%), Positives = 150/385 (38%), Gaps = 42/385 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAF---QVPNLQIFRSEP-IHYRMRAEFHIWHDGDD 57 L Y++QL K + Q + +V N+ I S+ YR +A F + + Sbjct: 75 GCQLQHISYQEQLQWKSNFASQNLWKLAREKVDNVHIVPSDLLYGYRAKAHFTFGEENNI 134 Query: 58 LYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL---------LRAKLFQID 108 L F + K + + ++++ +R L LR ++ Sbjct: 135 LNIGYFSKSDK-WFALTTCPILKETLWVTAQDVLSVLRKHDLKSYFTSNGTLRHLQVRVS 193 Query: 109 YLTSQSDQAIVTLIYHRLLDDAWRECAIRL---RDALHARKYQIQLIGRANKTKICLDRD 165 LT + Q +VT + E + ALH Q + Sbjct: 194 LLTGEK-QVLVTFTQFPKNFENVAEEILSAGISSLALHQNTAQ-NKTVIGKGATLYNGNQ 251 Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFS 224 YV E+L +Y SF Q N + L + D + E Y G G F+ Sbjct: 252 YVQEQLMGK----VYNITPVSFFQINPVQAEKLFSIALDYLEPQPEDIVFEGYSGVGAFT 307 Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284 L+ A+ V+A E + +V+ A N A N+V+NV+ + +E ++++ Sbjct: 308 LLYAQKVKTVIAAEGVEEAVQQACKNAALNNVDNVQFLAKPVEEAAGSLQQ--------- 358 Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST-THTI 341 + + VDPPR+G+ + V I+YISC+P +L RD+S +++ Sbjct: 359 ------KINKVVVDPPRNGMTQEALNAVARLQPERIVYISCDPSTLARDISRFQPFGYSL 412 Query: 342 ERLALFDQFPYTRHMECGVLLVRKP 366 + D FP T H+EC LL+++ Sbjct: 413 NHIQAIDMFPQTTHVECVALLIKEK 437 >gi|121599752|ref|YP_993159.1| 23S rRNA 5-methyluridine methyltransferase [Burkholderia mallei SAVP1] gi|251767657|ref|ZP_02268038.2| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia mallei PRL-20] gi|254197594|ref|ZP_04904016.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia pseudomallei S13] gi|254261237|ref|ZP_04952291.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia pseudomallei 1710a] gi|121228562|gb|ABM51080.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia mallei SAVP1] gi|169654335|gb|EDS87028.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia pseudomallei S13] gi|243062065|gb|EES44251.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia mallei PRL-20] gi|254219926|gb|EET09310.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia pseudomallei 1710a] Length = 485 Score = 216 bits (551), Expect = 3e-54, Method: Composition-based stats. Identities = 80/383 (20%), Positives = 138/383 (36%), Gaps = 39/383 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWH--DG 55 ++ Q+A K L + + YR RA + H Sbjct: 121 GCSMQHLDMRAQVAIKQRVLEDNLWHLAKLRAEAMFAPIHGPSWGYRYRARLTVRHVAKK 180 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115 + ++++ + ++A+++ + + +R ++ QI+ Sbjct: 181 GGVLVGFHEKKSSYVADMTSCEVLPPHVSAMLVPLRRLVEQL-SIRDRMPQIELAVGARV 239 Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD--RDYVDERLTV 173 A+V R+L+ LR+ + Q L + T +D L Sbjct: 240 TALVL----RVLEPINAADEALLREFADTHRVQFWLQPKGPDTVAPFYPLDAQLDYTLPE 295 Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFD 232 G + ++ FTQ N IN ++ L +GD +L+L+CG GNF+L LAR Sbjct: 296 FGIRMPFK--PTDFTQVNHQINRVLVGRALRLLAPERGDRVLDLFCGIGNFTLPLARLAR 353 Query: 233 RVLAVEIAKPSVEAARYNIAANHVN-NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291 V+ +E + A N N V+ + + E T R Sbjct: 354 EVVGIEGSDALTARALENAKENGVDGHTSFACRNLFEVTADDLRAL------------GA 401 Query: 292 FKTIFVDPPRSGL---DDATVGMVQ-----AYPHILYISCNPDSLCRDLSIL--STTHTI 341 F VDPPR G A + Q I+Y+SCNP +L RD +L + + Sbjct: 402 FDKFLVDPPREGALAVSKALAEIAQSGAGPLPARIVYVSCNPSTLARDAGLLVHEAGYRL 461 Query: 342 ERLALFDQFPYTRHMECGVLLVR 364 + + + FP+T H+E L R Sbjct: 462 KGAGVVNMFPHTSHVESIALFER 484 >gi|126455291|ref|YP_001066497.1| 23S rRNA 5-methyluridine methyltransferase [Burkholderia pseudomallei 1106a] gi|126228933|gb|ABN92473.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia pseudomallei 1106a] Length = 465 Score = 216 bits (551), Expect = 3e-54, Method: Composition-based stats. Identities = 80/383 (20%), Positives = 138/383 (36%), Gaps = 39/383 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWH--DG 55 ++ Q+A K L + + YR RA + H Sbjct: 101 GCSMQHLDMRAQVAIKQRVLEDNLWHLAKLRAEAMFAPIHGPSWGYRYRARLTVRHVEKK 160 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115 + ++++ + ++A+++ + + +R ++ QI+ Sbjct: 161 GGVLVGFHEKKSSYVADMTSCEVLPPHVSAMLVPLRRLVEQL-SIRDRMPQIELAVGARV 219 Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD--RDYVDERLTV 173 A+V R+L+ LR+ + Q L + T +D L Sbjct: 220 TALVL----RVLEPINAADEALLREFADTHRVQFWLQPKGPDTVAPFYPLDAQLDYTLPE 275 Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFD 232 G + ++ FTQ N IN ++ L +GD +L+L+CG GNF+L LAR Sbjct: 276 FGIRMPFK--PTDFTQVNHQINRVLVGRALRLLAPERGDRVLDLFCGIGNFTLPLARLAR 333 Query: 233 RVLAVEIAKPSVEAARYNIAANHVN-NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291 V+ +E + A N N V+ + + E T R Sbjct: 334 EVVGIEGSDALTARALENAKENGVDGHTSFACRNLFEVTADDLRAL------------GA 381 Query: 292 FKTIFVDPPRSGL---DDATVGMVQ-----AYPHILYISCNPDSLCRDLSIL--STTHTI 341 F VDPPR G A + Q I+Y+SCNP +L RD +L + + Sbjct: 382 FDKFLVDPPREGALAVSKALAEIAQSGAGPLPARIVYVSCNPSTLARDAGLLVHEAGYRL 441 Query: 342 ERLALFDQFPYTRHMECGVLLVR 364 + + + FP+T H+E L R Sbjct: 442 KGAGVVNMFPHTSHVESIALFER 464 >gi|242316213|ref|ZP_04815229.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia pseudomallei 1106b] gi|242139452|gb|EES25854.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia pseudomallei 1106b] Length = 485 Score = 216 bits (551), Expect = 4e-54, Method: Composition-based stats. Identities = 80/383 (20%), Positives = 138/383 (36%), Gaps = 39/383 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWH--DG 55 ++ Q+A K L + + YR RA + H Sbjct: 121 GCSMQHLDMRAQVAIKQRVLEDNLWHLAKLRAEAMFAPIHGPSWGYRYRARLTVRHVEKK 180 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115 + ++++ + ++A+++ + + +R ++ QI+ Sbjct: 181 GGVLVGFHEKKSSYVADMTSCEVLPPHVSAMLVPLRRLVEQL-SIRDRMPQIELAVGARV 239 Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD--RDYVDERLTV 173 A+V R+L+ LR+ + Q L + T +D L Sbjct: 240 TALVL----RVLEPINAADEALLREFADTHRVQFWLQPKGPDTVAPFYPLDAQLDYTLPE 295 Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFD 232 G + ++ FTQ N IN ++ L +GD +L+L+CG GNF+L LAR Sbjct: 296 FGIRMPFK--PTDFTQVNHQINRVLVGRALRLLAPERGDRVLDLFCGIGNFTLPLARLAR 353 Query: 233 RVLAVEIAKPSVEAARYNIAANHVN-NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291 V+ +E + A N N V+ + + E T R Sbjct: 354 EVVGIEGSDALTARALENAKENGVDGHTSFACRNLFEVTADDLRAL------------GA 401 Query: 292 FKTIFVDPPRSGL---DDATVGMVQ-----AYPHILYISCNPDSLCRDLSIL--STTHTI 341 F VDPPR G A + Q I+Y+SCNP +L RD +L + + Sbjct: 402 FDKFLVDPPREGALAVSKALAEIAQSGAGPLPARIVYVSCNPSTLARDAGLLVHEAGYRL 461 Query: 342 ERLALFDQFPYTRHMECGVLLVR 364 + + + FP+T H+E L R Sbjct: 462 KGAGVVNMFPHTSHVESIALFER 484 >gi|332159394|ref|YP_004424673.1| putative RNA methyltransferase [Pyrococcus sp. NA2] gi|331034857|gb|AEC52669.1| putative RNA methyltransferase [Pyrococcus sp. NA2] Length = 408 Score = 216 bits (551), Expect = 4e-54, Method: Composition-based stats. Identities = 84/379 (22%), Positives = 149/379 (39%), Gaps = 56/379 (14%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEP-IHYRMRAEFHIWHDGDDLYH 60 L Y+ QL K + LR+++ F + I S +R R + I +G Sbjct: 69 GCILQHIAYDYQLEFKREILRRIL-GF---EVDIIPSPRIFGHRNRIDVAITSEG----- 119 Query: 61 IMFDQQTK--ERMRIDYFMP-----------GSLLINALMIEMMATIRLEPLLRAKLFQI 107 I F ++ K + + ID I IE+ + LR + + Sbjct: 120 IGFRERGKWWKVVDIDECPVFGKTSKKALERLREFIEEEKIEVWKIKEDKGFLRYLVLRE 179 Query: 108 DYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYV 167 T + +V + + E + + + + K ++++ Sbjct: 180 GKFTG---EVMVNFVTKEGELPSPVEYFDFADSIYWSINRTMSDVSYGDVEK-WWGKEFI 235 Query: 168 DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVL 227 ER+ + Y NSF Q N+ ++++ V +G + +L++Y G G F + L Sbjct: 236 TERI----DDVKYLIHPNSFFQTNSYQAINLVRKVSEFVEGEK--ILDMYSGVGTFGIYL 289 Query: 228 ARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDI 287 A+ +V+ + + ++E AR N+ N V E EF D + Sbjct: 290 AKRGMKVVGFDSNEFAIEMARRNVEINEV-------------------EAEFFVGTDRAV 330 Query: 288 HSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILSTTHTIERLA 345 F T+ VDPPR+GL V + + I+Y+SCNP + RD+ +L + IE + Sbjct: 331 EVKGFDTVIVDPPRAGLHPKLVRRLNREKPDAIVYVSCNPKTFARDIKMLK--YKIEDII 388 Query: 346 LFDQFPYTRHMECGVLLVR 364 D FP+T H+E L + Sbjct: 389 ALDMFPHTPHVELVAKLSK 407 >gi|254433797|ref|ZP_05047305.1| 23S rRNA (uracil-5-)-methyltransferase [Nitrosococcus oceani AFC27] gi|207090130|gb|EDZ67401.1| 23S rRNA (uracil-5-)-methyltransferase [Nitrosococcus oceani AFC27] Length = 447 Score = 216 bits (551), Expect = 4e-54, Method: Composition-based stats. Identities = 81/378 (21%), Positives = 130/378 (34%), Gaps = 32/378 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSE-----PIHYRMRAEFHIW--HD 54 +L QL K +R+ F + + YR +A + Sbjct: 87 GCSLQHLSTAAQLQLKQVTVREQFRHFGGVEPEQWLPPLVGGGYWGYRYKARLGVKFVKK 146 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQS 114 D + ++ + ++ + L+ + + ++ QI+ Sbjct: 147 KDRVLVGFREKGSSLIAALEGCEVPHPSVGYLLPAL-GELIASLSCYDRIPQIEVAAGDQ 205 Query: 115 DQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVA 174 +V R L +L A K QI L G +T L + Sbjct: 206 STGLV----FRHLVPLTTADTEQLVAFGQAHKLQIYLQGGGAETVRLLWPAGARLSYSQF 261 Query: 175 GR-TLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFD 232 G+ +I+ + FTQ N +N M+ VL + G+ +L+L+CG GNF+L LA Sbjct: 262 GKLEMIF--LPTDFTQVNREVNTKMVRRVLELLEIKSGERVLDLFCGIGNFTLPLAIAGA 319 Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292 V+ +E V A N N + N F Sbjct: 320 EVVGIEGNAGLVARAVANATHNRLENAYFEMAD-----------LNGAEWTHYVWAREGF 368 Query: 293 KTIFVDPPRSGLDDATVGMVQAY-PHILYISCNPDSLCRDLSIL--STTHTIERLALFDQ 349 +DPPRSG A M + I+Y+SCNP +L RD L + + + D Sbjct: 369 SKALLDPPRSGALLAVQQMSKLRVQRIVYVSCNPATLARDAGELVNRQGYRLRYAGVIDM 428 Query: 350 FPYTRHMECGVLLV--RK 365 FP+T H+E L RK Sbjct: 429 FPHTTHVETLALFEQTRK 446 >gi|167893942|ref|ZP_02481344.1| 23S rRNA 5-methyluridine methyltransferase [Burkholderia pseudomallei 7894] gi|167918662|ref|ZP_02505753.1| 23S rRNA 5-methyluridine methyltransferase [Burkholderia pseudomallei BCC215] Length = 465 Score = 216 bits (551), Expect = 4e-54, Method: Composition-based stats. Identities = 80/383 (20%), Positives = 139/383 (36%), Gaps = 39/383 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWH--DG 55 ++ Q+A K L + + YR RA + H Sbjct: 101 GCSMQHLDMRAQVAIKQRVLEDNLWHLAKLRAEAMFAPIHGPSWGYRYRARLTVRHVAKK 160 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115 + ++++ + ++A+++ + + +R ++ QI+ Sbjct: 161 GGVLVGFHEKKSSYVADMTSCEVLPPHVSAMLVPLRRLVEQL-SIRDRMPQIELAVGARV 219 Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD--RDYVDERLTV 173 A+V R+L+ LR+ + Q L + T +D L Sbjct: 220 TALVL----RVLEPINAADEALLREFADTHRVQFWLQPKGPDTVAPFYPLDAQLDYTLPE 275 Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFD 232 G + ++ FTQ N IN ++ L +GD +L+L+CG GNF+L LAR Sbjct: 276 FGIRMPFK--PTDFTQVNHQINRVLVGRALRLLAPERGDRVLDLFCGIGNFTLPLARLAR 333 Query: 233 RVLAVEIAKPSVEAARYNIAANHVN-NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291 V+ +E + A N N V+ + + E T R Sbjct: 334 EVVGIEGSDALTARALENAKENGVDGHTSFACRNLFEVTADDLRAL------------GA 381 Query: 292 FKTIFVDPPRSGL---DDATVGMVQAYP-----HILYISCNPDSLCRDLSIL--STTHTI 341 F VDPPR G A + Q+ I+Y+SCNP +L RD +L + + Sbjct: 382 FDKFLVDPPREGALAVSKALAEIAQSGAGPLPTRIVYVSCNPSTLARDAGLLVHEAGYRL 441 Query: 342 ERLALFDQFPYTRHMECGVLLVR 364 + + + FP+T H+E L R Sbjct: 442 KGAGVVNMFPHTSHVESIALFER 464 >gi|269123421|ref|YP_003305998.1| RNA methyltransferase, TrmA family [Streptobacillus moniliformis DSM 12112] gi|268314747|gb|ACZ01121.1| RNA methyltransferase, TrmA family [Streptobacillus moniliformis DSM 12112] Length = 466 Score = 216 bits (551), Expect = 4e-54, Method: Composition-based stats. Identities = 79/401 (19%), Positives = 158/401 (39%), Gaps = 51/401 (12%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMM-LAFQVPNLQ----IFRSEPIHYRMRAEFHIWHDGD 56 + YE+Q K + + +++ + + N + + YR + EF ++ Sbjct: 82 GCSFQYLSYEKQAELKANLVYKLIDNSIKNKNYEKLPIVTMGNDKEYRNKMEFSFGNEYK 141 Query: 57 D--LYHIMFDQQT-KERMRIDYFMPGSLLINAL-----------MIEMMATIRLEPLLRA 102 D + + + + + + ++ + I + LR Sbjct: 142 DGPIILGLHKKNSFHDIVNVNECRLMDENFRKIVRFTNDFFSKKDISFYHRLTHIGFLRN 201 Query: 103 KLFQIDYLTSQSDQAIVTL--IYHRLLDDAWRECAI------RLRDALHARKYQIQLIGR 154 + + T + IVT I + + D ++E + L+ +H R Sbjct: 202 LVIRKGEKTKELGVNIVTTSQIENYDIIDEYKEKLLCLDLSMGLKSIIHTINDNKSDSVR 261 Query: 155 ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA-----TKGI 209 A+K I + + ERL L + SF Q N+ + + V+ Sbjct: 262 ADKEIILYGKRDITERL----FDLSFNVSPYSFFQTNSFGVEKLYQEVINNLLFITKNDE 317 Query: 210 QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269 + + +L+ G G +++++ V +E+ + +V A N N + N K + Sbjct: 318 KPIVFDLFSGTGTIGQIVSKYSKEVYGIELIEEAVIKANENAIKNGITNAKFIAGDV--- 374 Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDS 327 F +L++ D + + + +DPPRSG+ + T+ + Y +I+Y+SCNP + Sbjct: 375 ---------FEKLREFDKENIKPDILILDPPRSGVGEKTILKLLEYNVNYIIYVSCNPKT 425 Query: 328 LCRDLSILS-TTHTIERLALFDQFPYTRHMECGVLLVRKPS 367 L DL I ++ ++R+ D F YT H+EC VL+ R S Sbjct: 426 LAEDLKIFEYNSYILKRVVCVDMFGYTPHVECIVLIQRVKS 466 >gi|288576123|ref|ZP_05978225.2| 23S rRNA (uracil-5-)-methyltransferase RumA [Neisseria mucosa ATCC 25996] gi|288566282|gb|EFC87842.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Neisseria mucosa ATCC 25996] Length = 458 Score = 216 bits (551), Expect = 4e-54, Method: Composition-based stats. Identities = 82/374 (21%), Positives = 145/374 (38%), Gaps = 28/374 (7%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSE----PIHYRMRAEFHIWHDGDD 57 ++ Q+A K + + + + P HYR RA I D Sbjct: 94 GCSIQHIDPTAQIAFKQRIMEEQLERIGKIRPEQILPAIYGTPWHYRDRARLSISKDAGG 153 Query: 58 LYHIMF-DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116 I F +++ E + +D M I+ + ++ L+ L+ L I++ S+ Sbjct: 154 RLKIGFKAKKSHEVIDVDSCMVLPAHISEKLPKIKQ--MLQSLIDLDLLFIEFFNSEKLT 211 Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKT--KICLDRD--YVDERLT 172 + + R+ L K Q Q+ +A + + +D + L Sbjct: 212 VLNICSRKKPPSQKLRQLEKWFDTILGCEKKQWQIWLQAGRQEAQPFYPKDCQPLGYALP 271 Query: 173 VAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHF 231 + Y+ FTQ NAG+N M+ L + +L+CG GNFS+ +A+ Sbjct: 272 EFEVEMPYK--PGDFTQINAGLNGVMVGRALKLLDIQKNERIADLFCGLGNFSIPMAKSG 329 Query: 232 DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291 V+ +E VE AR N +AN F++A E + L + Sbjct: 330 AEVVGIEGEGSLVERARNNASANG-------CFDRVSFSEADLFETDETVLASWG----Q 378 Query: 292 FKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSIL-STTHTIERLALFD 348 F + +DPPRSG + Y I+Y+SCNP + RD +L + + ++ + + + Sbjct: 379 FDKMLLDPPRSGAYAVVKSLHAPYLPVKIVYVSCNPATFARDAEVLVNKGYRLKFVGVMN 438 Query: 349 QFPYTRHMECGVLL 362 F T H+E + Sbjct: 439 MFAQTSHVESIGVF 452 >gi|217421778|ref|ZP_03453282.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia pseudomallei 576] gi|226197424|ref|ZP_03793001.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia pseudomallei Pakistan 9] gi|217395520|gb|EEC35538.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia pseudomallei 576] gi|225930803|gb|EEH26813.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia pseudomallei Pakistan 9] Length = 485 Score = 216 bits (551), Expect = 4e-54, Method: Composition-based stats. Identities = 80/383 (20%), Positives = 139/383 (36%), Gaps = 39/383 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWH--DG 55 ++ Q+A K L + + YR RA + H Sbjct: 121 GCSMQHLDMRAQVAIKQRVLEDNLWHLAKLRAEAMFAPIHGPSWGYRYRARLTVRHVAKK 180 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115 + ++++ + ++A+++ + + +R ++ QI+ Sbjct: 181 GGVLVGFHEKKSSYVADMTSCEVLPPHVSAMLVPLRRLVEQL-SIRDRMPQIELAVGARV 239 Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD--RDYVDERLTV 173 A+V R+L+ LR+ + Q L + T +D L Sbjct: 240 TALVL----RVLEPINAADEALLREFADTHRVQFWLQPKGPDTVAPFYPLDAQLDYTLPE 295 Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFD 232 G + ++ FTQ N IN ++ L +GD +L+L+CG GNF+L LAR Sbjct: 296 FGIRMPFK--PTDFTQVNHQINRVLVGRALRLLAPERGDRVLDLFCGIGNFTLPLARLAR 353 Query: 233 RVLAVEIAKPSVEAARYNIAANHVN-NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291 V+ +E + A N N V+ + + E T R Sbjct: 354 EVVGIEGSDALTARALENAKENGVDGHTSFACRNLFEVTADDLRAL------------GA 401 Query: 292 FKTIFVDPPRSGL---DDATVGMVQAYP-----HILYISCNPDSLCRDLSIL--STTHTI 341 F VDPPR G A + Q+ I+Y+SCNP +L RD +L + + Sbjct: 402 FDKFLVDPPREGALAVSKALAEIAQSGAGPLPTRIVYVSCNPSTLARDAGLLVHEAGYRL 461 Query: 342 ERLALFDQFPYTRHMECGVLLVR 364 + + + FP+T H+E L R Sbjct: 462 KGAGVVNMFPHTSHVESIALFER 484 >gi|240948983|ref|ZP_04753337.1| 23S rRNA 5-methyluridine methyltransferase [Actinobacillus minor NM305] gi|240296570|gb|EER47188.1| 23S rRNA 5-methyluridine methyltransferase [Actinobacillus minor NM305] Length = 440 Score = 216 bits (551), Expect = 4e-54, Method: Composition-based stats. Identities = 80/370 (21%), Positives = 148/370 (40%), Gaps = 29/370 (7%) Query: 2 SGTLL-IDQYEQQLAEKVDRLRQMMLAFQVPNLQI---FRSEPIHYRMRAEFHIWHDGDD 57 G + E Q K L Q + Q + + + YR R + + + Sbjct: 91 GGCQMQHISLEVQRETKQQALFQRLQKLQSSPITLEPMLVGQAKGYRRRTKLSVALQNGN 150 Query: 58 LYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQA 117 + Q + + + ++ + ++AL++ + + + L I+ + + + A Sbjct: 151 VVMGFRMQNSNQIIPLEQCEILTPALSALLLPLQNLLLNWKQKKH-LGHIELVEADNTVA 209 Query: 118 IVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRT 177 ++ R + + + +L K + L+ A + + E+ Sbjct: 210 MLL----RYMGELAQSDLAQLLAFAKETKLSLFLMNDAQQIEHICG-----EKPYYKLND 260 Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLA 236 L F Q NA N M+ L + D +L+L+CG GNF+L LA+ V+ Sbjct: 261 LTLHFSIRDFIQVNAEQNQKMVAQALNWLALEKSDRVLDLFCGMGNFTLPLAQQAGYVVG 320 Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296 VE + V AR N N ++NV + + E R D + F + Sbjct: 321 VEGVEEMVATARQNAVENQLDNVAFYQTNLDE------------RFVDQPWATEAFNKVL 368 Query: 297 VDPPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTR 354 +DP R G A + + P I+Y+SCNP +L RD L + +++ ++A+ D FP+T Sbjct: 369 LDPARHGAYFALDHLCELNPERIVYVSCNPATLVRDAEKLIKSGYSLAKVAVIDMFPHTG 428 Query: 355 HMECGVLLVR 364 H+E L V+ Sbjct: 429 HLESISLFVK 438 >gi|195352293|ref|XP_002042647.1| GM14902 [Drosophila sechellia] gi|194124531|gb|EDW46574.1| GM14902 [Drosophila sechellia] Length = 615 Score = 216 bits (551), Expect = 4e-54, Method: Composition-based stats. Identities = 80/422 (18%), Positives = 154/422 (36%), Gaps = 64/422 (15%) Query: 3 GTLLIDQYEQQLAEKVDRLRQMMLAF----------QVPNL------QIFRSEPI-HYRM 45 L Y+QQL +K + + ++ + P+L ++ S + YR Sbjct: 165 CPLSHIAYDQQLKQKSEEMSALLAKYTQELRKVNPRAKPHLDKFQFHEVLPSPTVNGYRN 224 Query: 46 RAEFHIWHDGDD-----LYHIMFDQQTKERMRI---DYFMPGSLLINALMIEMMATIRLE 97 + EF + + + + E + + + +++ + Sbjct: 225 KNEFTVGKNSAGEVVVGFRLGCYSDGSVEVAEVADLPHLPEQAKWAARSFQDLVRKSKFL 284 Query: 98 PL--------LRAKLFQIDYLTSQSDQAIVTLIYHRLL-DDAWRECAIRLRDALHARK-- 146 P R + + T + +V IY L +D E L+ Sbjct: 285 PFNPDGNVGHFRQLMVRCSSATGE--LMLVAGIYSSNLSEDEQAELKEELKSFYEELGKD 342 Query: 147 ---------YQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVH 197 YQ A +T ++ +T + L +R +F Q N Sbjct: 343 APYKCTSLYYQDVKHREAGQTINPVEHISGSTHITDTIQGLQFRISPLAFFQINTEGANV 402 Query: 198 MLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV 256 + + + + +L++ CG G +L A+H +V+ VEI +++ A +N AN + Sbjct: 403 LYQKAIDLVAPTKDTTMLDICCGTGTITLAFAKHCKKVMGVEIVPDAIKDAEFNAEANGI 462 Query: 257 NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--- 313 N K ++ +F ++M RE +++ + VDPPR+GL ++ ++ Sbjct: 463 KNAKFFTGNADDFIKSMVREALYDQEPGKPLDL----IAVVDPPRAGLHHRSIAAIRSAD 518 Query: 314 AYPHILYISCNPDSLCRDLSIL---------STTHTIERLALFDQFPYTRHMECGVLLVR 364 A ++Y+SCNP S R+ L + D FP+T H E +L R Sbjct: 519 AINRLVYVSCNPHSAKRNFIELARPESKQYKGEPFYPKSAVAVDMFPHTMHTELVILFER 578 Query: 365 KP 366 +P Sbjct: 579 EP 580 >gi|126442107|ref|YP_001059230.1| 23S rRNA 5-methyluridine methyltransferase [Burkholderia pseudomallei 668] gi|126221600|gb|ABN85106.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia pseudomallei 668] Length = 485 Score = 216 bits (551), Expect = 4e-54, Method: Composition-based stats. Identities = 80/383 (20%), Positives = 138/383 (36%), Gaps = 39/383 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWH--DG 55 ++ Q+A K L + + YR RA + H Sbjct: 121 GCSMQHLDMRAQVAIKQRVLEDNLWHLAKLRAEAMFAPIHGPSWGYRYRARLTVRHVAKK 180 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115 + ++++ + ++A+++ + + +R ++ QI+ Sbjct: 181 GGVLVGFHEKKSSYVADMTSCEVLPPHVSAMLVPLRRLVEQL-SIRDRMPQIELAVGARV 239 Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD--RDYVDERLTV 173 A+V R+L+ LR+ + Q L + T +D L Sbjct: 240 TALVL----RVLEPINAADEALLREFADTHRVQFWLQPKGPDTVAPFYPLDAQLDYTLPE 295 Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFD 232 G + ++ FTQ N IN ++ L +GD +L+L+CG GNF+L LAR Sbjct: 296 FGIRMPFK--PTDFTQVNHQINRVLVGRALRLLAPERGDRVLDLFCGIGNFTLPLARLAR 353 Query: 233 RVLAVEIAKPSVEAARYNIAANHVN-NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291 V+ +E + A N N V+ + + E T R Sbjct: 354 EVVGIEGSDALTARALENAKENGVDGHTSFACRNLFEVTADDLRAL------------GA 401 Query: 292 FKTIFVDPPRSGL---DDATVGMVQ-----AYPHILYISCNPDSLCRDLSIL--STTHTI 341 F VDPPR G A + Q I+Y+SCNP +L RD +L + + Sbjct: 402 FDKFLVDPPREGALAVSKALAEIAQSGAGPLPARIVYVSCNPSTLARDAGLLVHEAGYRL 461 Query: 342 ERLALFDQFPYTRHMECGVLLVR 364 + + + FP+T H+E L R Sbjct: 462 KGAGVVNMFPHTSHVESIALFER 484 >gi|89256815|ref|YP_514177.1| 23S rRNA 5-methyluridine methyltransferase [Francisella tularensis subsp. holarctica LVS] gi|115315201|ref|YP_763924.1| 23S rRNA 5-methyluridine methyltransferase [Francisella tularensis subsp. holarctica OSU18] gi|156502981|ref|YP_001429046.1| 23S rRNA 5-methyluridine methyltransferase [Francisella tularensis subsp. holarctica FTNF002-00] gi|167009854|ref|ZP_02274785.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Francisella tularensis subsp. holarctica FSC200] gi|254368098|ref|ZP_04984118.1| 23S rRNA (uracil-5-)-methyltransferase [Francisella tularensis subsp. holarctica 257] gi|290953511|ref|ZP_06558132.1| 23S rRNA 5-methyluridine methyltransferase [Francisella tularensis subsp. holarctica URFT1] gi|295313203|ref|ZP_06803862.1| 23S rRNA 5-methyluridine methyltransferase [Francisella tularensis subsp. holarctica URFT1] gi|122324802|sp|Q0BKU7|RUMA_FRATO RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|122500404|sp|Q2A275|RUMA_FRATH RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|89144646|emb|CAJ79970.1| 23S rRNA (Uracil-5-)-methyltransferase [Francisella tularensis subsp. holarctica LVS] gi|115130100|gb|ABI83287.1| 23S rRNA (uracil-5-)-methyltransferase [Francisella tularensis subsp. holarctica OSU18] gi|134253908|gb|EBA53002.1| 23S rRNA (uracil-5-)-methyltransferase [Francisella tularensis subsp. holarctica 257] gi|156253584|gb|ABU62090.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Francisella tularensis subsp. holarctica FTNF002-00] Length = 449 Score = 216 bits (551), Expect = 4e-54, Method: Composition-based stats. Identities = 75/380 (19%), Positives = 152/380 (40%), Gaps = 35/380 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQV---PN---LQIFRSEPIHYRMRAEFHIWH-- 53 +L + Q+ K L + P + S YR +A + + Sbjct: 87 GCSLQHMSTDAQIEHKQQTLINQLKYIGNGVEPENILPPLRTSNTEGYRNKARLGVRYVS 146 Query: 54 DGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQ 113 + ++ + ID + + L+ + E+ + I + + + Q++ Sbjct: 147 KKGKILVGFRERNGRFLADIDKCIVLNPLVGDKITEISSFIETLSIYQH-IAQLEIAIDD 205 Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKT--KICLDRDYVDERL 171 + A++ R L+ E +LR Y I L + T ++ D ++L Sbjct: 206 TRPAMIV----RHLEPFTNEDLEKLRSFAQENNYWIYLQSKGPDTIFRLYPQGDVEPKKL 261 Query: 172 TVAGRTLI---YRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVL 227 + I + N FTQ N IN M++ + + D +++L+CG GNF+L + Sbjct: 262 SYQPAAGIDIGFE--PNDFTQVNNDINKKMIKRAIELLDISENDSIIDLFCGLGNFTLPI 319 Query: 228 ARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDI 287 ++H V+ VE V+ A+ N++ NV + ++ + FN Sbjct: 320 SQHAKTVIGVEGEPTMVKRAKETADNNNITNVNFY---AANLFESFEDKEWFN------- 369 Query: 288 HSYRFKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSIL--STTHTIERL 344 ++ + + +DPPR+G + + + I+Y+SC+ +L RD IL + + + Sbjct: 370 -NFEYNKMLLDPPRAGAQEVCNNIEKFNVKRIVYVSCDTAALARDAGILVNTKGYKLISA 428 Query: 345 ALFDQFPYTRHMECGVLLVR 364 + D FP+T H+E + + Sbjct: 429 GVMDMFPHTMHVESIAVFEK 448 >gi|326561885|gb|EGE12220.1| 23S rRNA 5-methyluridine methyltransferase [Moraxella catarrhalis 7169] gi|326563319|gb|EGE13586.1| 23S rRNA 5-methyluridine methyltransferase [Moraxella catarrhalis 46P47B1] gi|326565973|gb|EGE16134.1| 23S rRNA 5-methyluridine methyltransferase [Moraxella catarrhalis 103P14B1] gi|326568893|gb|EGE18962.1| 23S rRNA 5-methyluridine methyltransferase [Moraxella catarrhalis BC1] gi|326575378|gb|EGE25303.1| 23S rRNA 5-methyluridine methyltransferase [Moraxella catarrhalis 101P30B1] Length = 497 Score = 216 bits (551), Expect = 4e-54, Method: Composition-based stats. Identities = 82/391 (20%), Positives = 153/391 (39%), Gaps = 39/391 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWH--DG 55 +L Q + Q+ K L+++++ I + + YR +A + + Sbjct: 115 GCSLQHWQADAQIDFKQSVLKELLIHQAGIEPDIWLKPLVGDRLGYRTKARMGVRYVAKK 174 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQS- 114 D ++ + ++ I +E + + + R + Q++ Q+ Sbjct: 175 DSALVGFRERASNFLAELNECHILDKRI-GFELENLKALITDLNARDSIPQLEIAMGQTL 233 Query: 115 ----DQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDER 170 D + R + + E +LR AR +Q+ L + + +D + Sbjct: 234 PHVPDSIKSVAVIVRHMQELDDEDLAKLRQFFAARNWQLFLQPKGVDSVHRIDTEDARPT 293 Query: 171 -----------LTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYC 218 + L Y FTQ N +N M++ + +G+ +L+L+C Sbjct: 294 SLTVPPTGGLFYHLPNFDLTYEFSPLDFTQVNLSVNQKMMDLASSLLNLQKGERVLDLFC 353 Query: 219 GNGNFSLVLARHFDR---VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275 G GNFSLVLAR V+ VE ++ E A+ N AN + + + +K+ TQ + Sbjct: 354 GLGNFSLVLARQVGESGFVVGVEGSEQMTERAKMNACANGIAHTEFY---AKDLTQDLSD 410 Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSI 334 + + RF + +DPPRSG + + + I+Y+SCNP +L RD Sbjct: 411 -------QPWATGNNRFDALLIDPPRSGAWEVMAYLPKFNAKRIVYVSCNPVTLARDTKA 463 Query: 335 L-STTHTIERLALFDQFPYTRHMECGVLLVR 364 L + + + D F +T H+E R Sbjct: 464 LIEAGYRLTHAGVMDMFSHTGHVESIARFER 494 >gi|54112953|gb|AAV29110.1| NT02FT0992 [synthetic construct] Length = 449 Score = 216 bits (551), Expect = 4e-54, Method: Composition-based stats. Identities = 75/380 (19%), Positives = 152/380 (40%), Gaps = 35/380 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQV---PN---LQIFRSEPIHYRMRAEFHIWH-- 53 +L + Q+ K L + P + S YR +A + + Sbjct: 87 GCSLQHMSTDAQIEHKQQTLINQLKYIGNGVEPENILPPLRTSNTEGYRNKARLGVRYVS 146 Query: 54 DGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQ 113 + ++ + ID + + L+ + E+ + I + + + Q++ Sbjct: 147 KKGKILVGFRERNGRFLADIDKCIVLNPLVGDKITEISSFIETLSIYQH-IAQLEIAIDD 205 Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKT--KICLDRDYVDERL 171 + A++ R L+ E +LR Y I L + T ++ D ++L Sbjct: 206 TRPAMIV----RHLEPFTNEDLEKLRSFAQENNYWIYLQSKGPDTIFRLYPQGDVEPKKL 261 Query: 172 TVAGRTLI---YRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVL 227 + I + N FTQ N IN M++ + + D +++L+CG GNF+L + Sbjct: 262 SYQPAAGIDIGFE--PNDFTQVNNDINKKMIKRAIELLDISENDSIIDLFCGLGNFTLPI 319 Query: 228 ARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDI 287 ++H V+ VE V+ A+ N++ NV + ++ + FN Sbjct: 320 SQHAKTVIGVEGEPTMVKRAKETADNNNITNVNFY---AANLFESFEDKEWFN------- 369 Query: 288 HSYRFKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSIL--STTHTIERL 344 ++ + + +DPPR+G + + + I+Y+SC+ +L RD IL + + + Sbjct: 370 -NFEYNKMLLDPPRAGAQEVCNNIEKFNVKRIVYVSCDTAALARDAGILVNTKGYKLISA 428 Query: 345 ALFDQFPYTRHMECGVLLVR 364 + D FP+T H+E + + Sbjct: 429 GVMDMFPHTMHVESIAVFEK 448 >gi|224456895|ref|ZP_03665368.1| 23S rRNA 5-methyluridine methyltransferase [Francisella tularensis subsp. tularensis MA00-2987] gi|254370321|ref|ZP_04986326.1| hypothetical protein [Francisella tularensis subsp. tularensis FSC033] gi|254874638|ref|ZP_05247348.1| rumA, 23S rRNA (uracil-5-)-methyltransferase [Francisella tularensis subsp. tularensis MA00-2987] gi|151568564|gb|EDN34218.1| hypothetical protein FTBG_00076 [Francisella tularensis subsp. tularensis FSC033] gi|254840637|gb|EET19073.1| rumA, 23S rRNA (uracil-5-)-methyltransferase [Francisella tularensis subsp. tularensis MA00-2987] Length = 449 Score = 216 bits (551), Expect = 4e-54, Method: Composition-based stats. Identities = 75/380 (19%), Positives = 152/380 (40%), Gaps = 35/380 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQV---PN---LQIFRSEPIHYRMRAEFHIWH-- 53 +L + Q+ K L + P + S YR +A + + Sbjct: 87 GCSLQHMSTDAQIEHKQQTLINQLKYIGNGVEPENILPPLRTSNTEGYRNKARLGVRYVS 146 Query: 54 DGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQ 113 + ++ + ID + + L+ + E+ + I + + + Q++ Sbjct: 147 KKGKILVGFRERNGRFLADIDKCIVLNPLVGDKITEISSFIETLSIYQH-IAQLEIAIDD 205 Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKT--KICLDRDYVDERL 171 + A++ R L+ E +LR Y I L + T ++ D ++L Sbjct: 206 TRPAMIV----RHLEPFTNEDLEKLRSFAQENNYWIYLQSKGPDTIFRLYPQGDVEPKKL 261 Query: 172 TVAGRTLI---YRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVL 227 + I + N FTQ N IN M++ + + D +++L+CG GNF+L + Sbjct: 262 SYQPAAGIDIGFE--PNDFTQVNNDINKKMIKRAIELLDISENDSIIDLFCGLGNFTLPI 319 Query: 228 ARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDI 287 ++H V+ VE V+ A+ N++ NV + ++ + FN Sbjct: 320 SQHAKTVIGVEGEPTMVKRAKETADNNNITNVNFY---AANLFESFEDKEWFN------- 369 Query: 288 HSYRFKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSIL--STTHTIERL 344 ++ + + +DPPR+G + + + I+Y+SC+ +L RD IL + + + Sbjct: 370 -NFEYNKMLLDPPRAGAQEVCNNIEKFNVKRIVYVSCDTAALARDAGILVNTKGYKLISA 428 Query: 345 ALFDQFPYTRHMECGVLLVR 364 + D FP+T H+E + + Sbjct: 429 GVMDMFPHTMHVESIAVFEK 448 >gi|194873870|ref|XP_001973294.1| GG13433 [Drosophila erecta] gi|190655077|gb|EDV52320.1| GG13433 [Drosophila erecta] Length = 615 Score = 216 bits (551), Expect = 4e-54, Method: Composition-based stats. Identities = 80/422 (18%), Positives = 154/422 (36%), Gaps = 64/422 (15%) Query: 3 GTLLIDQYEQQLAEKVDRLRQMMLAF----------QVPNL------QIFRSEPI-HYRM 45 L YEQQL +K + + ++ + P+L ++ S + YR Sbjct: 165 CPLSHIAYEQQLKQKSEDMSALLAKYTQELRKVNPRAKPHLDKFQFQEVLPSPTVNGYRN 224 Query: 46 RAEFHIWHDGDD-----LYHIMFDQQTKERMRI---DYFMPGSLLINALMIEMMATIRLE 97 + EF + + + + E + + + +++ R Sbjct: 225 KNEFTVGKNSAGEVVVGFRLGCYSDGSVEVAEVADLPHLPEQAKWAARSFQDLVRKSRFL 284 Query: 98 PL--------LRAKLFQIDYLTSQSDQAIVTLIYHRLL-DDAWRECAIRLRDALHAR--- 145 P R + + T + +V IY L DD E L+ Sbjct: 285 PFNPDGNVGHFRQLMVRCSSATGE--LMLVAGIYSSNLSDDEQGELKQELKSFYEELAKD 342 Query: 146 ------KYQIQLIGRANKTKIC--LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVH 197 Q + ++ ++ + +T + L +R +F Q N Sbjct: 343 APYKCTSLYYQDVKHREAGQMINPVEHIWGSTHITDTIQGLQFRISPLAFFQINTEGANV 402 Query: 198 MLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV 256 + + + + +L++ CG G +L A+H +V+ VEI +++ A +N AN + Sbjct: 403 LYQKAIDLVAPTKDTTMLDICCGTGTITLAFAKHCRKVMGVEIVPDAIKDAEFNAEANGI 462 Query: 257 NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--- 313 N K ++ +F ++M RE +++ + VDPPR+GL ++ ++ Sbjct: 463 KNAKFFTGNANDFIKSMVREALYDQEPGKPVDL----IAVVDPPRAGLHHRSIAAIRSAD 518 Query: 314 AYPHILYISCNPDSLCRDLSIL---------STTHTIERLALFDQFPYTRHMECGVLLVR 364 A ++Y+SCNP S R+ L + D FP+T H E +L R Sbjct: 519 AINRLVYVSCNPHSAKRNFIELARPESKQYKGEPFYPKSAVAVDMFPHTMHTELVILFER 578 Query: 365 KP 366 +P Sbjct: 579 EP 580 >gi|326576535|gb|EGE26443.1| 23S rRNA 5-methyluridine methyltransferase [Moraxella catarrhalis CO72] Length = 473 Score = 216 bits (550), Expect = 4e-54, Method: Composition-based stats. Identities = 82/391 (20%), Positives = 153/391 (39%), Gaps = 39/391 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWH--DG 55 +L Q + Q+ K L+++++ I + + YR +A + + Sbjct: 91 GCSLQHWQADAQIDFKQSVLKELLIHQAGIEPDIWLKPLVGDRLGYRTKARMGVRYVAKK 150 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQS- 114 D ++ + ++ I +E + + + R + Q++ Q+ Sbjct: 151 DSALVGFRERASNFLAELNECHILDKRI-GFELENLKALITDLNARDSIPQLEIAMGQTL 209 Query: 115 ----DQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDER 170 D + R + + E +LR AR +Q+ L + + +D + Sbjct: 210 PHVPDSIKSVAVIVRHMQELDDEDLAKLRQFFAARNWQLFLQPKGVDSVHRIDTEDARPT 269 Query: 171 -----------LTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYC 218 + L Y FTQ N +N M++ + +G+ +L+L+C Sbjct: 270 SLTVPPTGGLFYHLPNFDLTYEFSPLDFTQVNLSVNQKMMDLASSLLNLQKGERVLDLFC 329 Query: 219 GNGNFSLVLARHFDR---VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275 G GNFSLVLAR V+ VE ++ E A+ N AN + + + +K+ TQ + Sbjct: 330 GLGNFSLVLARQVGESGFVVGVEGSEQMTERAKMNACANGIAHTEFY---AKDLTQDLSD 386 Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSI 334 + + RF + +DPPRSG + + + I+Y+SCNP +L RD Sbjct: 387 -------QPWATGNNRFDALLIDPPRSGAWEVMAYLPKFNAKRIVYVSCNPVTLARDTKA 439 Query: 335 L-STTHTIERLALFDQFPYTRHMECGVLLVR 364 L + + + D F +T H+E R Sbjct: 440 LIEAGYRLTHAGVMDMFSHTGHVESIARFER 470 >gi|88812357|ref|ZP_01127607.1| 23S rRNA methyltransferase/RumA [Nitrococcus mobilis Nb-231] gi|88790364|gb|EAR21481.1| 23S rRNA methyltransferase/RumA [Nitrococcus mobilis Nb-231] Length = 450 Score = 216 bits (550), Expect = 4e-54, Method: Composition-based stats. Identities = 86/380 (22%), Positives = 140/380 (36%), Gaps = 31/380 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHI-WHDGD 56 L +QQL K +R+ + S YR +A + + G Sbjct: 86 GCALQHLTPQQQLTFKETVVREKLRHMGGVEPSTWLAPLGSPAWGYRRKARLAVKYVAGK 145 Query: 57 DLYHIMFDQQTKERMRIDY--FMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQS 114 D ++ ++T + D I A + ++ TIR + ++ QI+ Sbjct: 146 DDRVLVGFRETHSTLVADLASCRVLDPRIGAHIPQLAETIRCLSIF-DRVPQIEVAAGDQ 204 Query: 115 DQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQI--QLIGRANKTKICLDRDYVDERLT 172 +V R L E L + + Q +A+ I + L Sbjct: 205 AVGLV----FRNLAPFTVEDYRLLSAFARQYDFYVYEQPGDKASVRPIWPRAPQLSYALP 260 Query: 173 VAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHF 231 ++ + FTQ N +N ++E +A Q +L+LYCG GNF+ +AR Sbjct: 261 DHAVSVFFE--PTDFTQVNPAVNHALVERAIALLALQPQDRVLDLYCGLGNFAFCIARQV 318 Query: 232 DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291 V+ +E VE AR N A N + NV R + + Sbjct: 319 ASVVGLEGDDALVERARENAARNAITNVVFQRADLSRGIAELAH-----------LQRDG 367 Query: 292 FKTIFVDPPRSGLDDATVGMVQAY-PHILYISCNPDSLCRDLSIL--STTHTIERLALFD 348 + +DPPRSG + + I+Y+SC P +L RD L + + + D Sbjct: 368 VSRVLLDPPRSGAAEVLADIAALRAERIVYVSCGPSTLARDAGRLVHEYGYRLAAAGVMD 427 Query: 349 QFPYTRHMECGVLLVRKPSG 368 FP+T H+EC L VR +G Sbjct: 428 MFPHTAHVECITLFVRDQAG 447 >gi|77164319|ref|YP_342844.1| 23S rRNA methyltransferase/RumA [Nitrosococcus oceani ATCC 19707] gi|91207806|sp|Q3JCY2|RUMA_NITOC RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|76882633|gb|ABA57314.1| 23S rRNA m(5)U-1939 methyltransferase [Nitrosococcus oceani ATCC 19707] Length = 447 Score = 216 bits (550), Expect = 4e-54, Method: Composition-based stats. Identities = 81/378 (21%), Positives = 130/378 (34%), Gaps = 32/378 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSE-----PIHYRMRAEFHIW--HD 54 +L QL K +R+ F + + YR +A + Sbjct: 87 GCSLQHLSTAAQLQLKQVTVREQFRHFGGVEPEQWLPPLVGGGYWGYRYKARLGVKFVKK 146 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQS 114 D + ++ + ++ + L+ + + ++ QI+ Sbjct: 147 KDRVLVGFREKGSSLIAALEGCEVLHPSVGYLLPAL-GELIASLSCYDRIPQIEVAAGDQ 205 Query: 115 DQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVA 174 +V R L +L A K QI L G +T L + Sbjct: 206 STGLV----FRHLVPLTTADTEQLVAFGQAHKLQIYLQGGGAETVRLLWPAGARLSYSQF 261 Query: 175 GR-TLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFD 232 G+ +I+ + FTQ N +N M+ VL + G+ +L+L+CG GNF+L LA Sbjct: 262 GKLEMIF--LPTDFTQVNREVNTKMVRRVLELLEIKSGERVLDLFCGIGNFTLPLAIAGA 319 Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292 V+ +E V A N N + N F Sbjct: 320 EVVGIEGNAGLVARAVANATHNRLENAYFEMAD-----------LNGAEWTHYVWAREGF 368 Query: 293 KTIFVDPPRSGLDDATVGMVQAY-PHILYISCNPDSLCRDLSIL--STTHTIERLALFDQ 349 +DPPRSG A M + I+Y+SCNP +L RD L + + + D Sbjct: 369 SKALLDPPRSGALLAVQQMSKLRVQRIVYVSCNPATLARDAGELVNRQGYRLRYAGVIDM 428 Query: 350 FPYTRHMECGVLLV--RK 365 FP+T H+E L RK Sbjct: 429 FPHTTHVETLALFEQTRK 446 >gi|134277323|ref|ZP_01764038.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia pseudomallei 305] gi|134250973|gb|EBA51052.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia pseudomallei 305] Length = 485 Score = 216 bits (550), Expect = 5e-54, Method: Composition-based stats. Identities = 80/383 (20%), Positives = 139/383 (36%), Gaps = 39/383 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWH--DG 55 ++ Q+A K L + + YR RA + H Sbjct: 121 GCSMQHLDMRAQVAIKQRVLEDNLWHLAKLRAEAMFAPIHGPSWGYRYRARLTVRHVAKK 180 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115 + ++++ + ++A+++ + + +R ++ QI+ Sbjct: 181 GGVLVGFHEKKSSYVADMTSCEVLPPHVSAMLVPLRRLVEQL-SIRDRMPQIELAVGARV 239 Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD--RDYVDERLTV 173 A+V R+L+ LR+ + Q L + T +D L Sbjct: 240 TALVL----RVLEPINAADEALLREFADTHRVQFWLQPKGPDTVAPFYPLDAQLDYTLPE 295 Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFD 232 G + ++ FTQ N IN ++ L +GD +L+L+CG GNF+L LAR Sbjct: 296 FGIRMPFK--PTDFTQVNHQINRVLVGRALRLLAPERGDRVLDLFCGIGNFTLPLARLAR 353 Query: 233 RVLAVEIAKPSVEAARYNIAANHVN-NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291 V+ +E + A N N V+ + + E T R Sbjct: 354 EVVGIEGSDALTARALENAKENGVDGHTSFACRNLFEVTSDDLRAL------------GA 401 Query: 292 FKTIFVDPPRSGL---DDATVGMVQAYP-----HILYISCNPDSLCRDLSIL--STTHTI 341 F VDPPR G A + Q+ I+Y+SCNP +L RD +L + + Sbjct: 402 FDKFLVDPPREGALAVSKALAEIAQSGAGPLPTRIVYVSCNPSTLARDAGLLVHEAGYRL 461 Query: 342 ERLALFDQFPYTRHMECGVLLVR 364 + + + FP+T H+E L R Sbjct: 462 KGAGVVNMFPHTSHVESIALFER 484 >gi|77359689|ref|YP_339264.1| 23S rRNA (uracil-5)-methyltransferase, responsible for modification at position U1939, SAM-dependent [Pseudoalteromonas haloplanktis TAC125] gi|123587143|sp|Q3IDM6|RUMA_PSEHT RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|76874600|emb|CAI85821.1| 23S rRNA (uracil-5)-methyltransferase, responsible for modification at position U1939, SAM-dependent [Pseudoalteromonas haloplanktis TAC125] Length = 441 Score = 216 bits (550), Expect = 5e-54, Method: Composition-based stats. Identities = 83/378 (21%), Positives = 147/378 (38%), Gaps = 39/378 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL----QIFRSEPIHYRMRAEFHIWHDGD- 56 L QQ+ EK + ++ F + S+ HYR A + D Sbjct: 89 GCQLQHLDSSQQVVEKQIAVSKLFEKFAKLDELNWQAPLLSKATHYRRSARLAVMFDKKA 148 Query: 57 -DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115 ++ +K + I+ S + + I L + L + Sbjct: 149 KKMHVGYRASGSKSIISINECPVLSEVFANVFTVFDNLINQHKALHS--VSHLQLCQGDE 206 Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD----YVDERL 171 Q V + + + + + + + A + Q QL+ ++ I Y E L Sbjct: 207 QNFVIIRHTKPISEDIKALVAQ-----SAAEQQWQLVWQSESEVIEHSHLAMPFYALEEL 261 Query: 172 TVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLAR 229 L + N+F Q NA +N ML+ ++GD +L+L+CG GNFSLVLA+ Sbjct: 262 -----GLKFEFGLNNFIQVNASVNQAMLKQA-QNWLALKGDENVLDLFCGIGNFSLVLAK 315 Query: 230 HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHS 289 V+ VE +V A N N + N + N+++ + Sbjct: 316 QAKTVIGVEGVASAVAMATQNAHTNSITNAQFNCFDLT------------NKIETASWFN 363 Query: 290 YRFKTIFVDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDLSILST-THTIERLALF 347 + +DP R+G + ++ + ILY+SC+P +L RD +I+S + ++ L Sbjct: 364 KNLDVLVLDPSRTGAITVLEQLPLKQFKTILYVSCDPVTLARDSAIISQAGFELHKIGLM 423 Query: 348 DQFPYTRHMECGVLLVRK 365 + FP+T H+E L R+ Sbjct: 424 NMFPHTGHIETMALFQRR 441 >gi|218289362|ref|ZP_03493596.1| RNA methyltransferase, TrmA family [Alicyclobacillus acidocaldarius LAA1] gi|218240468|gb|EED07649.1| RNA methyltransferase, TrmA family [Alicyclobacillus acidocaldarius LAA1] Length = 449 Score = 216 bits (550), Expect = 5e-54, Method: Composition-based stats. Identities = 76/378 (20%), Positives = 141/378 (37%), Gaps = 31/378 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSE----PIHYRMRAEFHIWHDGDD 57 + Y Q A K R+R+M + + E P YR + + + + Sbjct: 87 GCQVQHMAYAAQAAWKEARIRRMAERLGLDASIVRPIEISRTPYRYRNQVQMPVRWNAAA 146 Query: 58 LYHIM--FDQQTKERMRIDYFMPGSLLINALMIEMMATIR----LEPLLRAKLFQIDYLT 111 M F + + + + ++ ++ + + + + +T Sbjct: 147 QRVEMGFFALGSHDMAVTETCLLVPEAMDDVLRRARWFLTSLGSTAQFVHHVIVRQSRVT 206 Query: 112 SQSDQAI-VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDER 170 + V + R+ R A ++ + + N ++ R +++E Sbjct: 207 GEMAVVFAVAVDDPRVKRSVGRFHAPQVAQVAVTVQPRAHGPVWGNAVEVFKGRTHLEEI 266 Query: 171 LTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLAR 229 + L R SF Q + M E V+ A + + D+ ++ YCG G +L+LA Sbjct: 267 MC----GLRVRWSPRSFLQVQTDMAERMYEHVVRAAEVRETDVVIDAYCGIGVITLLLAE 322 Query: 230 HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHS 289 R + VE + ++ AR N N + N + V + + E Sbjct: 323 RAARAVGVEEVEDAITDARANAKLNRLRNTEFVVDRVERWLPRFVEE------------G 370 Query: 290 YRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSIL-STTHTIERLAL 346 R + DPPR G+D A + ++Y+SCNP +L RDL +L + + + Sbjct: 371 NRADVLVFDPPRKGVDRAAIEAAAEANVERLVYVSCNPATLERDLRLLMTRGFYVADIQP 430 Query: 347 FDQFPYTRHMECGVLLVR 364 FD FP T H+EC V + R Sbjct: 431 FDMFPQTSHVECVVAMRR 448 >gi|301169038|emb|CBW28635.1| 23S rRNA (uracil-5)-methyltransferase [Haemophilus influenzae 10810] Length = 438 Score = 216 bits (550), Expect = 5e-54, Method: Composition-based stats. Identities = 88/364 (24%), Positives = 153/364 (42%), Gaps = 32/364 (8%) Query: 11 EQQLAEKVDRLRQMMLAFQVPNLQIFRS----EPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66 E Q K L + + Q F+ + YR R +W + M +Q Sbjct: 98 EMQRKAKQSALFKRLSKLQS-EPISFQPMICGDAWAYRRRVRLSLWFNPSTKQIDMGFRQ 156 Query: 67 --TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 T + + + IN L+ ++ A + + +L I+ + + + A++ L Y Sbjct: 157 KNTNDLIPVQSCEVAEPAINYLLPKLTALLEKFSAPK-QLGHIELVAADNGVAML-LRYT 214 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + L + R ++ A + ++ L +++K +++ Y D + Sbjct: 215 KNLAEIDRTLLLKF-----AEQEKLMLFLQSDKG---IEQIYGDAPYYQFSDGIKLHFDI 266 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 F Q N+ +N M+ L + Q D +L+L+CG GNF+L LA+ + +E Sbjct: 267 RDFIQVNSALNERMVNTALDWLELSQQDCVLDLFCGMGNFTLPLAKRVKSAVGIEGVFEM 326 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 V+ A N A N + N++ + Q+ + N+ F I +DPPRSG Sbjct: 327 VQKAAQNAARNQIKNIEFFQAD---LDQSFVEQPWANQ---------SFNKILLDPPRSG 374 Query: 304 LDDATVGMVQAY-PHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVL 361 A + + ILY+SCNP +L RD IL + IE+ A+ D FP+T H+E L Sbjct: 375 AAFALNALCELKAEKILYVSCNPATLVRDAEILRDFGYKIEKSAVIDMFPHTGHLESITL 434 Query: 362 LVRK 365 K Sbjct: 435 FTTK 438 >gi|254252252|ref|ZP_04945570.1| tRNA (uracil-5-)-methyltransferase [Burkholderia dolosa AUO158] gi|124894861|gb|EAY68741.1| tRNA (uracil-5-)-methyltransferase [Burkholderia dolosa AUO158] Length = 465 Score = 216 bits (550), Expect = 5e-54, Method: Composition-based stats. Identities = 77/380 (20%), Positives = 139/380 (36%), Gaps = 33/380 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWH--DG 55 ++ Q+A K L + + YR RA + + Sbjct: 101 GCSMQHLDMRAQVAIKQRVLEDNLWHLAKLRAETMFAPIHGPSWGYRYRARLTVRNVVKK 160 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115 + ++++ + ++A+++ + + +R ++ QI+ S Sbjct: 161 GGVLVGFHEKKSSYVADMTSCEVLPPHVSAMLVPLRRLVEAL-SIRDRMPQIELAVGSSV 219 Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175 A+V + + +A E +R H ++ +Q G T +D L G Sbjct: 220 TALVLRVLEPI--NAADEALLRAFADEHQVQFWLQPKGPDTVTPFYPLDVSLDYTLPEFG 277 Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRV 234 + ++ FTQ N IN ++ L + D +L+L+CG GNF+L LAR V Sbjct: 278 IRMPFK--PTDFTQVNHQINRVLVGRALRLLAPSRDDRVLDLFCGIGNFTLPLARLAREV 335 Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294 + +E ++ A N N V+ F D F Sbjct: 336 MGIEGSETLTTRALANARENGVDGHTTFAC-----------RNLFEVTADDIRALGAFDK 384 Query: 295 IFVDPPRSGL---DDATVGMVQAYP-----HILYISCNPDSLCRDLSIL--STTHTIERL 344 +DPPR G A + Q+ I+Y+SCNP +L RD +L + ++ Sbjct: 385 FLIDPPREGALAVSKALAEIAQSGEGPLPMRIVYVSCNPSTLARDAGLLVHEAGYRLKGA 444 Query: 345 ALFDQFPYTRHMECGVLLVR 364 + + FP+T H+E L R Sbjct: 445 GVVNMFPHTSHVESIALFER 464 >gi|56707825|ref|YP_169721.1| 23S rRNA 5-methyluridine methyltransferase [Francisella tularensis subsp. tularensis SCHU S4] gi|110670296|ref|YP_666853.1| 23S rRNA 5-methyluridine methyltransferase [Francisella tularensis subsp. tularensis FSC198] gi|81597688|sp|Q5NGX1|RUMA_FRATT RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|122970996|sp|Q14IC3|RUMA_FRAT1 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|56604317|emb|CAG45338.1| 23S rRNA (Uracil-5-)-methyltransferase [Francisella tularensis subsp. tularensis SCHU S4] gi|110320629|emb|CAL08721.1| 23S rRNA (Uracil-5-)-methyltransferase [Francisella tularensis subsp. tularensis FSC198] gi|282159001|gb|ADA78392.1| 23S rRNA 5-methyluridine methyltransferase [Francisella tularensis subsp. tularensis NE061598] Length = 449 Score = 216 bits (550), Expect = 5e-54, Method: Composition-based stats. Identities = 75/380 (19%), Positives = 152/380 (40%), Gaps = 35/380 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQV---PN---LQIFRSEPIHYRMRAEFHIWH-- 53 +L + Q+ K L + P + S YR +A + + Sbjct: 87 GCSLQHMSTDAQIEHKQQTLINQLKYIGNGVEPENILPPLRTSNTEGYRNKARLGVRYVS 146 Query: 54 DGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQ 113 + ++ + ID + + L+ + E+ + I + + + Q++ Sbjct: 147 KKGKILVGFRERNGRFLADIDKCIVLNPLVGDKITEISSFIETLSIYQH-IAQLEIAIDD 205 Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKT--KICLDRDYVDERL 171 + A++ R L+ E +LR Y I L + T ++ D ++L Sbjct: 206 TRPAMIV----RHLEPFTNEDLEKLRSFAQENNYWIYLQSKGPDTIFRLYPQGDVEPKKL 261 Query: 172 TVAGRTLI---YRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVL 227 + I + N FTQ N IN M++ + + D +++L+CG GNF+L + Sbjct: 262 SYQPAAGIDIGFE--PNDFTQVNNDINKKMIKRAIELLDISENDSIIDLFCGLGNFTLPI 319 Query: 228 ARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDI 287 ++H V+ VE V+ A+ N++ NV + ++ + FN Sbjct: 320 SQHAKTVIGVEGEPTMVKRAKETADNNNITNVNFY---AANLFESFEDKEWFN------- 369 Query: 288 HSYRFKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSIL--STTHTIERL 344 ++ + + +DPPR+G + + + I+Y+SC+ +L RD IL + + + Sbjct: 370 -NFEYNKMLLDPPRAGAQEVCNNIEKFNVKRIVYVSCDTAALARDAGILVNTKGYKLISA 428 Query: 345 ALFDQFPYTRHMECGVLLVR 364 + D FP+T H+E + + Sbjct: 429 GVMDMFPHTMHVESIAVFEK 448 >gi|90415716|ref|ZP_01223650.1| RNA methyltransferase, TrmA family protein [marine gamma proteobacterium HTCC2207] gi|90333039|gb|EAS48209.1| RNA methyltransferase, TrmA family protein [marine gamma proteobacterium HTCC2207] Length = 439 Score = 216 bits (550), Expect = 5e-54, Method: Composition-based stats. Identities = 84/374 (22%), Positives = 142/374 (37%), Gaps = 31/374 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRS---EPIHYRMRAEFHIWHDGDDL 58 TL + Q+A K +L + + I + YR RA + D Sbjct: 86 GCTLQHLDHGAQIAFKQQQLLDSLQRVDLSPEIILPALSAPQWGYRRRARLAVQRAKDGQ 145 Query: 59 YHIMFDQQTKERM-RIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQA 117 + F R+ I + + ++ + + P +L +I+ L++ + A Sbjct: 146 IIVGFRNAGSRRIEPITECHVLAEPLPEIVAALPGWMVNFPS-GIRLSEIELLSADNAVA 204 Query: 118 IVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRT 177 I L QL + K D D+ L V Sbjct: 205 IAIEASRVPSASEREAMLAELT------FTDAQLWWKTEKQTAFKRIDGGDQALHVVLND 258 Query: 178 LIY-RQIENSFTQPNAGINVHMLEWVLAATKGIQGD----LLELYCGNGNFSLVLARHFD 232 I + F Q N+ IN M++ VL + + ++L+CG+GNFSL LA FD Sbjct: 259 RIELQVEPGQFVQVNSEINRQMIDQVLDLVRTPNSERASVAVDLFCGSGNFSLPLAAQFD 318 Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292 RV+ +E V A+ N N+V+N + V + + + Sbjct: 319 RVIGIEGLSELVGKAQENAQRNNVSNAEFVVSD-------------LSNWTGMRKIKGKV 365 Query: 293 KTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQF 350 + +DPPRSG +V+ ++YISC+P ++ RDL +L + + + D F Sbjct: 366 DLVLLDPPRSGAAGVMPWVVKTKAKQVVYISCHPSTMVRDLKVLVEAGYKMIAAGVMDMF 425 Query: 351 PYTRHMECGVLLVR 364 P+T H+E LL + Sbjct: 426 PHTAHVEAIALLEK 439 >gi|238786284|ref|ZP_04630226.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Yersinia bercovieri ATCC 43970] gi|238712807|gb|EEQ04877.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Yersinia bercovieri ATCC 43970] Length = 425 Score = 216 bits (550), Expect = 5e-54, Method: Composition-based stats. Identities = 73/361 (20%), Positives = 134/361 (37%), Gaps = 32/361 (8%) Query: 12 QQLAE--KVDRLRQMML---AFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66 QL + K D L +++ + YR RA + + M +Q Sbjct: 79 SQLQQTSKADSLSRLIAHATGLCPKLEPVICGPEYGYRRRARLGLLYQPKQHRLQMGFRQ 138 Query: 67 T--KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 T + + + + + L+ + + + +L ++ + + + +V Sbjct: 139 TESHDLVSVKHCPVLRPELERLLQPLYQCLSALQAV-QRLGHVELVLADNGPLLVL---- 193 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 R LD + L D + L G + + E L Sbjct: 194 RHLDTLKQVDRTALIDFAKREQVTFYLAGDGENLEKLIG-----EEPYYQIDGLRLAFHP 248 Query: 185 NSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 F Q N +N M+ +A Q +L+L+CG GNF+L LA+ V+ VE Sbjct: 249 RDFIQVNDVVNQKMVAQAIAWLDVQPQERVLDLFCGMGNFTLPLAKRAREVVGVEGVAAL 308 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 V +YN N + NV + + + + F + +DP R+G Sbjct: 309 VANGQYNARNNTLPNVSFFHENLE------------SDISCQPWAVQGFDKVLLDPARAG 356 Query: 304 LDDATVGMVQAYP-HILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVL 361 +V+ P ++Y+SCNP +L RD +L+ + + ++ + D FP+T H+E L Sbjct: 357 AAGVMSHIVKLAPKRVVYVSCNPTTLARDSQVLLAAGYRLAQVRMLDMFPHTGHLESMAL 416 Query: 362 L 362 Sbjct: 417 F 417 >gi|326571866|gb|EGE21871.1| 23S rRNA 5-methyluridine methyltransferase [Moraxella catarrhalis BC8] Length = 497 Score = 216 bits (550), Expect = 5e-54, Method: Composition-based stats. Identities = 81/391 (20%), Positives = 153/391 (39%), Gaps = 39/391 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWH--DG 55 +L Q + Q+ K L+++++ I + + YR +A + + Sbjct: 115 GCSLQHWQADAQIDFKQSVLKELLIHQAGIEPDIWLKPLVGDRLGYRTKARMGVRYVAKK 174 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQS- 114 D ++ + ++ I ++ + + + R + Q++ Q+ Sbjct: 175 DSALVGFRERASNFLAELNECHILDKRI-GFELKNLKALITDLNARDSIPQLEIAMGQTL 233 Query: 115 ----DQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDER 170 D + R + + E +LR AR +Q+ L + + +D + Sbjct: 234 PHVPDSIKSVAVIVRHMQELDDEDLAKLRQFFAARNWQLLLQPKGVDSVHRIDTEDARPT 293 Query: 171 -----------LTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYC 218 + L Y FTQ N +N M++ + +G+ +L+L+C Sbjct: 294 SLTVPPTGGLFYHLPNFDLTYEFSPLDFTQVNLSVNQKMMDLASSLLNLQKGERVLDLFC 353 Query: 219 GNGNFSLVLARHFDR---VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275 G GNFSLVLAR V+ VE ++ E A+ N AN + + + +K+ TQ + Sbjct: 354 GLGNFSLVLARQVGESGFVVGVEGSEQMTERAKMNACANGIAHTEFY---AKDLTQDLSD 410 Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSI 334 + + RF + +DPPRSG + + + I+Y+SCNP +L RD Sbjct: 411 -------QPWATGNNRFDALLIDPPRSGAWEVMAYLPKFNAKRIVYVSCNPVTLARDTKA 463 Query: 335 L-STTHTIERLALFDQFPYTRHMECGVLLVR 364 L + + + D F +T H+E R Sbjct: 464 LIEAGYRLTHAGVMDMFSHTGHVESIARFER 494 >gi|325954001|ref|YP_004237661.1| RNA methyltransferase, TrmA family [Weeksella virosa DSM 16922] gi|323436619|gb|ADX67083.1| RNA methyltransferase, TrmA family [Weeksella virosa DSM 16922] Length = 471 Score = 216 bits (550), Expect = 5e-54, Method: Composition-based stats. Identities = 77/403 (19%), Positives = 134/403 (33%), Gaps = 56/403 (13%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ------VPNLQIFRSEPIH-YRMRAEFHIWH- 53 Y+ QL K + + ++ L I SE + YR + EF + Sbjct: 84 GCKWQDMHYDAQLRYKQEEVLNNLIRIGGFANLSAELLPILGSEQAYWYRNKLEFTFSNA 143 Query: 54 --------------DGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL 99 + + Q + + I NA+ IE L Sbjct: 144 RWLTLEEINSTDEFNDRNALGFHIPGQWSKVLDIHRCHLQRDPSNAIRIEAKRFAIENKL 203 Query: 100 -------LRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLI 152 L + TSQ+ Q +V + + R + L D + I Sbjct: 204 DFFDLYKQEGFLRTLMIRTSQNGQVMVLVQFFREEKENREAFLQNLHDKFPEITSLLYAI 263 Query: 153 GRANKTKIC-------LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA 205 + D++ E++ L ++ SF Q N L + Sbjct: 264 NPKQNDSVYDLDIHVFAGEDHIVEQM----EDLHFKIGPKSFYQTNPQQAYE-LYKLTRD 318 Query: 206 TKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVR 263 G+ G + +LY G G + +++ +V+ VE ++ AA+ N + N + Sbjct: 319 FAGLTGKELVYDLYTGTGTIAQFVSKKARKVVGVESVAEAIYAAKAAAELNKITNCEFFC 378 Query: 264 MSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG--MVQAYPHILYI 321 K+ +D + DPPR G+ V ++ I+Y+ Sbjct: 379 GDMKDVLN-----------EDFIQQHGIPDVLITDPPRDGMHKKVVENILLMNPKKIVYV 427 Query: 322 SCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 SCN + RDL ++ + I ++ D FP T H+E VLL R Sbjct: 428 SCNSATQARDLELMKEQYKIIKVQPVDMFPQTHHVENIVLLER 470 >gi|189350615|ref|YP_001946243.1| 23S rRNA 5-methyluridine methyltransferase [Burkholderia multivorans ATCC 17616] gi|189334637|dbj|BAG43707.1| SAM-dependent methyltransferase [Burkholderia multivorans ATCC 17616] Length = 465 Score = 216 bits (549), Expect = 5e-54, Method: Composition-based stats. Identities = 79/380 (20%), Positives = 138/380 (36%), Gaps = 33/380 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-IFRS---EPIHYRMRAEFHIWH--DG 55 ++ Q+A K L + + IF YR RA + H Sbjct: 101 GCSMQHLDMRAQVAIKQRVLEDNLWHLAKLRAESIFAPIHGPSWGYRYRARLTVRHVAKK 160 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115 + ++++ + ++A+++ + + +R ++ QI+ Sbjct: 161 GGVLVGFHEKKSSYVADMTSCEVLPPHVSAMLVPLRRLVEGL-SIRDRMPQIELAVGSQV 219 Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175 A+V + + +A E +R H ++ +Q G T +D L G Sbjct: 220 TALVLRVLEPI--NANDEALLRAFADEHKVQFWLQPKGPDTVTPFYPLDVSLDYTLPEFG 277 Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRV 234 + ++ FTQ N IN ++ L + D +L+L+CG GNF+L LAR V Sbjct: 278 IRMPFK--PTDFTQVNHQINRVLVGRALRLLAPARDDRVLDLFCGIGNFTLPLARLAREV 335 Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294 + +E ++ A N N V+ F D F Sbjct: 336 VGIEGSETLTTRALANARENGVDGHTTFAC-----------RNLFEVTADDIRALGAFDK 384 Query: 295 IFVDPPRSGL---DDATVGMVQ-----AYPHILYISCNPDSLCRDLSIL--STTHTIERL 344 +DPPR G A + Q I+Y+SCNP +L RD +L + ++ Sbjct: 385 FLIDPPREGALAVSKALADIAQSGEGPLPKRIVYVSCNPSTLARDAGLLVHEAGYRLKGA 444 Query: 345 ALFDQFPYTRHMECGVLLVR 364 + + FP T H+E L R Sbjct: 445 GVVNMFPNTSHVESIALFER 464 >gi|222110633|ref|YP_002552897.1| 23S rRNA 5-methyluridine methyltransferase [Acidovorax ebreus TPSY] gi|221730077|gb|ACM32897.1| RNA methyltransferase, TrmA family [Acidovorax ebreus TPSY] Length = 482 Score = 216 bits (549), Expect = 6e-54, Method: Composition-based stats. Identities = 75/394 (19%), Positives = 135/394 (34%), Gaps = 40/394 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIF----RSEPIHYRMRAEFHIWH--DG 55 + Q+A K L + + YR RA + + Sbjct: 97 GCKMQHLHVAAQVAVKQRVLEDNLWHLGKVKAETILRPIEGPAWGYRYRARLSVRYVPKK 156 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115 D + +++++ ++ ++A+++ + A I R QI+ + Sbjct: 157 DKVLVGFHERKSRYIADMETCKILPPHVDAMLMPLRALIGSMAA-RDTCPQIELACGDTV 215 Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175 A+V R L+ E +LR A Q L + T LD + Sbjct: 216 TALVL----RHLEPLSPEDKDKLRAFAAAHGVQWWLQPKGPDTVHLLDEGGEPLAYGLPD 271 Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRV 234 + FTQ N IN ++ L + + +++ +CG GNF+L +A V Sbjct: 272 FGITMPFKPTDFTQVNPHINRVLVTRALRLLDARKDERVIDWFCGLGNFTLPIATQAREV 331 Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294 L +E ++ V +R N +N +++ F F ++ I Sbjct: 332 LGIEGSEALVARSRENYQSNQAQRQDGSALAATSFV----ARNLFEMTPEMLIADGASDK 387 Query: 295 IFVDPPRSGLDDATVGMV----------------------QAYPHILYISCNPDSLCRDL 332 VDPPR G + + Q I+Y+SCNP +L RD Sbjct: 388 WLVDPPREGAFALSKALADIHQARIGAEDAPPLPAGHEGWQPPRRIVYVSCNPATLARDA 447 Query: 333 SIL--STTHTIERLALFDQFPYTRHMECGVLLVR 364 +L + + + FP+T H+E + R Sbjct: 448 GLLVHQAGYRCVAAGVVNMFPHTAHVESMAVFER 481 >gi|296112377|ref|YP_003626315.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Moraxella catarrhalis RH4] gi|295920071|gb|ADG60422.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Moraxella catarrhalis RH4] gi|326569193|gb|EGE19254.1| 23S rRNA 5-methyluridine methyltransferase [Moraxella catarrhalis BC7] Length = 497 Score = 216 bits (549), Expect = 6e-54, Method: Composition-based stats. Identities = 82/391 (20%), Positives = 153/391 (39%), Gaps = 39/391 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWH--DG 55 +L Q + Q+ K L+++++ I + + YR +A + + Sbjct: 115 GCSLQHWQADAQIDFKQSVLKELLIHQAGIEPDIWLEPLVGDRLGYRTKARMGVRYVAKK 174 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQS- 114 D ++ + ++ I +E + + + R + Q++ Q+ Sbjct: 175 DSALVGFRERASNFLAELNECHILDKRI-GFELENLKALITDLNARDSIPQLEIAMGQTL 233 Query: 115 ----DQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDER 170 D + R + + E +LR AR +Q+ L + + +D + Sbjct: 234 PHVPDSIKSVAVIVRHMQELDDEDLAKLRQFFAARNWQLLLQPKGVDSVHRIDTEDARPT 293 Query: 171 -----------LTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYC 218 + L Y FTQ N +N M++ + +G+ +L+L+C Sbjct: 294 SLTVPPTGGLFYHLPNFELTYEFSPLDFTQVNLSVNQKMMDLASSLLNLQKGERVLDLFC 353 Query: 219 GNGNFSLVLARHFDR---VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275 G GNFSLVLAR V+ VE ++ E A+ N AN + + + +K+ TQ + Sbjct: 354 GLGNFSLVLARQVGESGFVVGVEGSEQMTERAKMNACANGIAHTEFY---AKDLTQDLSD 410 Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSI 334 + + RF + +DPPRSG + + + I+Y+SCNP +L RD Sbjct: 411 -------QPWATGNNRFDALLIDPPRSGAWEVMAYLPKFNAKRIVYVSCNPVTLARDTKA 463 Query: 335 L-STTHTIERLALFDQFPYTRHMECGVLLVR 364 L + + + D F +T H+E R Sbjct: 464 LIEAGYRLTHAGVMDMFSHTGHVESIARFER 494 >gi|187932009|ref|YP_001891994.1| 23S rRNA 5-methyluridine methyltransferase [Francisella tularensis subsp. mediasiatica FSC147] gi|187712918|gb|ACD31215.1| RNA methyltransferase, trmA family [Francisella tularensis subsp. mediasiatica FSC147] Length = 449 Score = 216 bits (549), Expect = 6e-54, Method: Composition-based stats. Identities = 75/380 (19%), Positives = 152/380 (40%), Gaps = 35/380 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQV---PN---LQIFRSEPIHYRMRAEFHIWH-- 53 +L + Q+ K L + P + S YR +A + + Sbjct: 87 GCSLQHMSTDAQIEHKQQTLINQLKYIGNGVEPENILPPLRTSNTEGYRNKARLGVRYVS 146 Query: 54 DGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQ 113 + ++ + ID + + L+ + E+ + I + + + Q++ Sbjct: 147 KKGKILVGFRERNGRFLADIDKCIVLNPLVGDKITEISSFIETLSIYQH-IAQLEIAIDD 205 Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKT--KICLDRDYVDERL 171 + A++ R L+ E +LR Y I L + T ++ D ++L Sbjct: 206 TRPAMIV----RHLEPFTNEDLEKLRSFAQENNYWIYLQSKGPDTIFRLYPQGDVEPKKL 261 Query: 172 TVAGRTLI---YRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVL 227 + I + N FTQ N IN M++ + + D +++L+CG GNF+L + Sbjct: 262 SYQPAAGIDIGFE--PNDFTQVNNDINKKMIKRAIELLDISENDSIIDLFCGLGNFTLPI 319 Query: 228 ARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDI 287 ++H V+ VE V+ A+ N++ NV + ++ + FN Sbjct: 320 SQHAKTVIGVEGEPTMVKRAKETADNNNITNVNFY---AANLFESFEDKEWFN------- 369 Query: 288 HSYRFKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSIL--STTHTIERL 344 ++ + + +DPPR+G + + + I+Y+SC+ +L RD IL + + + Sbjct: 370 -NFEYNKMLLDPPRAGAQEVCNNIEKFNVKRIVYVSCDTAALARDAGILVNTKGYKLISA 428 Query: 345 ALFDQFPYTRHMECGVLLVR 364 + D FP+T H+E + + Sbjct: 429 GVMDMFPHTMHVESIAIFEK 448 >gi|291618632|ref|YP_003521374.1| RumA [Pantoea ananatis LMG 20103] gi|291153662|gb|ADD78246.1| RumA [Pantoea ananatis LMG 20103] Length = 467 Score = 216 bits (549), Expect = 6e-54, Method: Composition-based stats. Identities = 80/343 (23%), Positives = 141/343 (41%), Gaps = 30/343 (8%) Query: 34 QIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ--TKERMRIDYFMPGSLLINALMIEMM 91 +I YR R + +M +Q T + + I + AL+I + Sbjct: 124 EIIAGPAWGYRRRVRLGLQWQNKTQQLLMGFRQAATNDLVDIQQCPIMVPQLEALIIPLR 183 Query: 92 ATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQL 151 + + ++ +L ++ + + + ++ R LD + +L H + + L Sbjct: 184 NCLTMLNAVK-RLGHVELVLADNGPVLLL----RHLDALSSDDIAKLERFSHQHQLMLFL 238 Query: 152 IGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG 211 + + DR LI+ F Q N +N M+ +A Sbjct: 239 DDGSETLRASGDR---QPFYHSHQLELIF--SPKDFIQVNDTVNQQMVAKAIAWLDLQPE 293 Query: 212 D-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270 D +L+L+CG GNF+L + + + VE V+ A YN N + NVK + + +E Sbjct: 294 DRVLDLFCGMGNFTLPVGKSVQSAVGVEGVAALVQQAEYNADVNALKNVKFFQHNLEEDV 353 Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH-ILYISCNPDSLC 329 F + +DP R+G +V+ P ++Y+SCNP +L Sbjct: 354 SR------------QPWAMQGFNKVLLDPARAGAAGVMAHVVKLSPECVVYVSCNPVTLA 401 Query: 330 RDLS-ILSTTHTIERLALFDQFPYTRHMECGVLLVRK---PSG 368 RD +LS + +ER+A+ D FP+TRH+E VL +K P+G Sbjct: 402 RDSETLLSAGYQLERVAMLDMFPHTRHLESMVLFRKKYKCPAG 444 >gi|118497214|ref|YP_898264.1| 23S rRNA 5-methyluridine methyltransferase [Francisella tularensis subsp. novicida U112] gi|194323513|ref|ZP_03057290.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Francisella tularensis subsp. novicida FTE] gi|143581148|sp|A0Q5J5|RUMA_FRATN RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|118423120|gb|ABK89510.1| RNA methyltransferase, trmA family [Francisella novicida U112] gi|194322368|gb|EDX19849.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Francisella tularensis subsp. novicida FTE] Length = 449 Score = 216 bits (549), Expect = 6e-54, Method: Composition-based stats. Identities = 75/380 (19%), Positives = 152/380 (40%), Gaps = 35/380 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQV---PN---LQIFRSEPIHYRMRAEFHIWH-- 53 +L + Q+ K L + P + S YR +A + + Sbjct: 87 GCSLQHMSTDAQIEHKQQTLINQLKYIGNGVEPENILPPLRTSNTEGYRNKARLGVRYVS 146 Query: 54 DGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQ 113 + ++ + ID + + L+ + E+ + I + + + Q++ Sbjct: 147 KKGKILVGFRERNGRFLADIDKCIVLNPLVGDKITEISSFIETLSIYQH-IAQLEIAIDD 205 Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKT--KICLDRDYVDERL 171 + A++ R L+ E +LR Y I L + T ++ D ++L Sbjct: 206 TRPAMIV----RHLEPFTNEDLEKLRSFAQQNNYWIYLQSKGPDTIFRLYPQGDVEPKKL 261 Query: 172 TVAGRTLI---YRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVL 227 + I + N FTQ N IN M++ + + D +++L+CG GNF+L + Sbjct: 262 SYQPAAGIDIGFE--PNDFTQVNNDINKKMIKRAIELLDISENDSIIDLFCGLGNFTLPI 319 Query: 228 ARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDI 287 ++H V+ VE V+ A+ N++ NV + ++ + FN Sbjct: 320 SQHAKTVIGVEGEPTMVKRAKETADNNNITNVNFY---AANLFESFEDKEWFN------- 369 Query: 288 HSYRFKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSIL--STTHTIERL 344 ++ + + +DPPR+G + + + I+Y+SC+ +L RD IL + + + Sbjct: 370 -NFEYNKMLLDPPRAGAQEVCNNIEKFNVKRIVYVSCDTATLARDAGILVNNKDYKLISA 428 Query: 345 ALFDQFPYTRHMECGVLLVR 364 + D FP+T H+E + + Sbjct: 429 GVMDMFPHTMHVESIAVFEK 448 >gi|262038996|ref|ZP_06012331.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Leptotrichia goodfellowii F0264] gi|261746988|gb|EEY34492.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Leptotrichia goodfellowii F0264] Length = 483 Score = 216 bits (549), Expect = 6e-54, Method: Composition-based stats. Identities = 68/417 (16%), Positives = 145/417 (34%), Gaps = 70/417 (16%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWHD--G 55 T Y Q K + ++ + I + YR + EF ++ Sbjct: 80 GCTFQNMNYGDQTELKSSLVLNILKRAANYEFEYEKIIKSPKEFEYRNKMEFSFGNEIID 139 Query: 56 DDLYHIMFDQQT-KERMRIDYFMPGS---------------LLINALMIEMMATIRLEPL 99 L M + + + + ++ + I+ Sbjct: 140 GPLTLGMHKKGSFHDIITVNECKLMDIDFRKILTATADYFRKKEEEGELSFYHRIQHIGY 199 Query: 100 LRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLR------DALHARKYQIQLIG 153 LR + + T + ++T W+E + L +H + Sbjct: 200 LRNFVIRKGEKTGEISINLITTSQIDFDLSEWKEIMLNLELKNKIYGIIHTINDNLSDSV 259 Query: 154 RANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD- 212 ++++ I ++ER+ L ++ SF Q N+ + V+ I + Sbjct: 260 QSDEENILYGNRDINERI----FDLNFKISPYSFFQTNSDGVELLYGKVMEYIDVISENE 315 Query: 213 ----------------------LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN 250 + +L+ G G ++++ +V +E+ + +V+ A Sbjct: 316 ELNNSSIAITVIKNPQNVKDCVVFDLFSGTGTIGQIVSKKAKQVYGIELIEEAVKKANET 375 Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310 N++ N + + F +L +++ + I +DPPR G+ + T+ Sbjct: 376 AKFNNIKNAEFIAGDV------------FEKLDELEERDVKPDIIILDPPRPGVGEKTIT 423 Query: 311 MVQAY--PHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364 + Y +I+Y+SCNP +L +DL+I + + + + D FP T H+E LLV+ Sbjct: 424 KLLKYNVSNIIYVSCNPKTLAQDLAIFHNNGYRLVKSCPVDMFPQTPHVEVVNLLVK 480 >gi|87118650|ref|ZP_01074549.1| 23S rRNA (uracil-5-)-methyltransferase [Marinomonas sp. MED121] gi|86166284|gb|EAQ67550.1| 23S rRNA (uracil-5-)-methyltransferase [Marinomonas sp. MED121] Length = 441 Score = 216 bits (549), Expect = 6e-54, Method: Composition-based stats. Identities = 88/376 (23%), Positives = 152/376 (40%), Gaps = 41/376 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQV-PNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60 + Y +Q+ K L + L+I + YR RA + D Sbjct: 94 GCCFMHLDYPEQIQAKHVWLGGQLRKLNYDGELEILSDSALAYRRRARLSVKQQKDASVK 153 Query: 61 IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVT 120 + F + K I I + + L P L+A + ++ L +QS+Q Sbjct: 154 MGF--RGKASTDI--------------IAIENCLVLMPALQAVIPHLNGLLAQSEQPQHI 197 Query: 121 LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIY 180 L DD +RL L + ++ +D +++ +L + Sbjct: 198 GHIELLEDDLGCSVLLRLTRQLSDNDQALWHEKALSQKWDLYLQDPAQDKVKCETDSLRH 257 Query: 181 RQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHF 231 Q+EN F Q N +NV M+ L + D +L+L+CG GNFSL +A+ Sbjct: 258 YQVENLTIHYHPQDFIQVNQRMNVKMVAQALQWLALSEQDKVLDLFCGAGNFSLAMAKTA 317 Query: 232 DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291 ++V+ VE+ V A N N + NV + T+ +R E Sbjct: 318 EKVVGVEVQAQMVRNAERNAERNGLKNVTFIGAD---LTKTVRNE----------ALKKG 364 Query: 292 FKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQ 349 F +DPPR+G + +++ ILY+SC+ +L RD L + + ++R+++ + Sbjct: 365 FSKALLDPPRAGAFEFLPSLIKLKIDTILYVSCDAATLARDAEFLVAHGYQVKRVSMMEM 424 Query: 350 FPYTRHMECGVLLVRK 365 FP T H+E +LL +K Sbjct: 425 FPQTAHVETMMLLQKK 440 >gi|161524629|ref|YP_001579641.1| 23S rRNA 5-methyluridine methyltransferase [Burkholderia multivorans ATCC 17616] gi|160342058|gb|ABX15144.1| RNA methyltransferase, TrmA family [Burkholderia multivorans ATCC 17616] Length = 487 Score = 216 bits (549), Expect = 6e-54, Method: Composition-based stats. Identities = 79/380 (20%), Positives = 138/380 (36%), Gaps = 33/380 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-IFRS---EPIHYRMRAEFHIWH--DG 55 ++ Q+A K L + + IF YR RA + H Sbjct: 123 GCSMQHLDMRAQVAIKQRVLEDNLWHLAKLRAESIFAPIHGPSWGYRYRARLTVRHVAKK 182 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115 + ++++ + ++A+++ + + +R ++ QI+ Sbjct: 183 GGVLVGFHEKKSSYVADMTSCEVLPPHVSAMLVPLRRLVEGL-SIRDRMPQIELAVGSQV 241 Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175 A+V + + +A E +R H ++ +Q G T +D L G Sbjct: 242 TALVLRVLEPI--NANDEALLRAFADEHKVQFWLQPKGPDTVTPFYPLDVSLDYTLPEFG 299 Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRV 234 + ++ FTQ N IN ++ L + D +L+L+CG GNF+L LAR V Sbjct: 300 IRMPFK--PTDFTQVNHQINRVLVGRALRLLAPARDDRVLDLFCGIGNFTLPLARLAREV 357 Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294 + +E ++ A N N V+ F D F Sbjct: 358 VGIEGSETLTTRALANARENGVDGHTTFAC-----------RNLFEVTADDIRALGAFDK 406 Query: 295 IFVDPPRSGL---DDATVGMVQ-----AYPHILYISCNPDSLCRDLSIL--STTHTIERL 344 +DPPR G A + Q I+Y+SCNP +L RD +L + ++ Sbjct: 407 FLIDPPREGALAVSKALADIAQSGEGPLPKRIVYVSCNPSTLARDAGLLVHEAGYRLKGA 466 Query: 345 ALFDQFPYTRHMECGVLLVR 364 + + FP T H+E L R Sbjct: 467 GVVNMFPNTSHVESIALFER 486 >gi|163846809|ref|YP_001634853.1| RNA methyltransferase [Chloroflexus aurantiacus J-10-fl] gi|222524630|ref|YP_002569101.1| RNA methyltransferase, TrmA family [Chloroflexus sp. Y-400-fl] gi|163668098|gb|ABY34464.1| RNA methyltransferase, TrmA family [Chloroflexus aurantiacus J-10-fl] gi|222448509|gb|ACM52775.1| RNA methyltransferase, TrmA family [Chloroflexus sp. Y-400-fl] Length = 416 Score = 216 bits (549), Expect = 6e-54, Method: Composition-based stats. Identities = 91/361 (25%), Positives = 149/361 (41%), Gaps = 40/361 (11%) Query: 10 YEQQLAEK----VDRLRQMMLAFQVPNLQIFRSE-PIHYRMRAEFHIWHDGDDLYHIMFD 64 Y Q+ K D+LR+ + +P + + P YR A H+ D Sbjct: 82 YPAQVRYKGIIVADQLRKFLPDITIPIQPVIAAPHPWGYRNSARLHV----DGATLGYHA 137 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 TK + + LL+ AL + + RL + ++ S + + Sbjct: 138 AGTKTVVDL---ADDPLLLPALRDTLRSLRRL--AFAGLIKEVTLRASATYGYAAARL-- 190 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 DA R RL A A + + ++ + +V + L +I+R Sbjct: 191 SPTPDAERHALWRLATAWKASTPVLAGVTLEDE--PFVGTPFVYDELA----GVIFRLSL 244 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 SF Q N M+ V A G LL+ Y G G+F+L LAR +D V+AVE +P+V Sbjct: 245 GSFFQVNHAQAERMVAVVRDALAPHGGRLLDAYSGVGSFALPLARCYDEVIAVEAYQPAV 304 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 E R + N + NV+ + +++ + S F + +DPPR G Sbjct: 305 EDGRQSAIDNQITNVQFINGAAEHTVAHL---------------SGPFHAVILDPPRRGC 349 Query: 305 DDATVGMVQAY--PHILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVL 361 A + + A+ P I+YISC+P + RDL+ +L+ + I + D FP T H+E + Sbjct: 350 HPALIEAIIAHAPPQIVYISCHPGLIGRDLAPLLAAGYQITFVQPVDLFPQTPHIETIIH 409 Query: 362 L 362 L Sbjct: 410 L 410 >gi|221212764|ref|ZP_03585740.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia multivorans CGD1] gi|221166977|gb|EED99447.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia multivorans CGD1] Length = 487 Score = 216 bits (549), Expect = 6e-54, Method: Composition-based stats. Identities = 79/380 (20%), Positives = 138/380 (36%), Gaps = 33/380 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-IFRS---EPIHYRMRAEFHIWH--DG 55 ++ Q+A K L + + IF YR RA + H Sbjct: 123 GCSMQHLDMRAQVAIKQRVLEDNLWHLAKLRAESIFAPIHGPSWGYRYRARLTVRHVAKK 182 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115 + ++++ + ++A+++ + + +R ++ QI+ Sbjct: 183 GGVLVGFHEKKSSYVADMTSCEVLPPHVSAMLVPLRRLVEGL-SIRDRMPQIELAVGSQV 241 Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175 A+V + + +A E +R H ++ +Q G T +D L G Sbjct: 242 TALVLRVLEPI--NANDEALLRAFADEHKVQFWLQPKGPDTVTPFYPLDVSLDYTLPEFG 299 Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRV 234 + ++ FTQ N IN ++ L + D +L+L+CG GNF+L LAR V Sbjct: 300 IRMPFK--PTDFTQVNHQINRVLVGRALRLLAPARDDRVLDLFCGIGNFTLPLARLAREV 357 Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294 + +E ++ A N N V+ F D F Sbjct: 358 VGIEGSETLTTRALANARENGVDGHTTFAC-----------RNLFEVTADDIRALGAFDK 406 Query: 295 IFVDPPRSGL---DDATVGMVQ-----AYPHILYISCNPDSLCRDLSIL--STTHTIERL 344 +DPPR G A + Q I+Y+SCNP +L RD +L + ++ Sbjct: 407 FLIDPPREGALAVSKALADIAQSGEGPLPKRIVYVSCNPSTLARDAGLLVHEAGYRLKGA 466 Query: 345 ALFDQFPYTRHMECGVLLVR 364 + + FP T H+E L R Sbjct: 467 GVVNMFPNTSHVESIALFER 486 >gi|194290012|ref|YP_002005919.1| 23S rRNA 5-methyluridine methyltransferase [Cupriavidus taiwanensis LMG 19424] gi|193223847|emb|CAQ69856.1| 23S rRNA (Uracil-5-)-methyltransferase rumA (23S rRNA(M-5-U1939)-methyltransferase) [Cupriavidus taiwanensis LMG 19424] Length = 487 Score = 216 bits (549), Expect = 6e-54, Method: Composition-based stats. Identities = 80/380 (21%), Positives = 133/380 (35%), Gaps = 33/380 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWH--DG 55 ++ QLA K L + + YR RA + H Sbjct: 123 GCSMQHLDSRAQLAIKQRVLEDNLWHLSKVKPDVVFRPIAGPDWGYRYRARLTVRHVVKK 182 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115 + ++++ + ++A+++ + + +R ++ QI+ Sbjct: 183 GGVLVGFHERKSSYVADMTRCEILPPHVSAMLVPLRELVAGL-SIRDRMPQIELAVGHEV 241 Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175 A+V R+L+ LR K Q L + T V+ T+ Sbjct: 242 TALVL----RILEPLTDADKDLLRAFADQYKVQFWLQPKGPDTVYPFYPTDVELAYTLPE 297 Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRV 234 + FTQ N IN ++ L GD LL+L+CG GNF+L LA V Sbjct: 298 FGIRMPFKPTDFTQVNHQINRVLIGRALRLLDAQPGDRLLDLFCGIGNFTLPLATQGKSV 357 Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294 + +E ++ A N N + + EF F D RF Sbjct: 358 MGIEGSEALTTRALANAEYNGL-------AAKTEFAC----RNLFEVTADDIAALGRFDR 406 Query: 295 IFVDPPRSGL---DDATVGMVQ-----AYPHILYISCNPDSLCRDLSIL--STTHTIERL 344 VDPPR G A + Q I+Y+SC+P +L RD +L + + Sbjct: 407 WLVDPPREGALAVSKALGELAQQGSDVLPRRIVYVSCSPATLARDAGLLVHEAGYRLSGA 466 Query: 345 ALFDQFPYTRHMECGVLLVR 364 + + FP+T H+E + R Sbjct: 467 GVVNMFPHTSHVESIAVFDR 486 >gi|167719262|ref|ZP_02402498.1| 23S rRNA 5-methyluridine methyltransferase [Burkholderia pseudomallei DM98] gi|254179546|ref|ZP_04886145.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia pseudomallei 1655] gi|184210086|gb|EDU07129.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia pseudomallei 1655] Length = 465 Score = 216 bits (549), Expect = 6e-54, Method: Composition-based stats. Identities = 80/383 (20%), Positives = 138/383 (36%), Gaps = 39/383 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWH--DG 55 ++ Q+A K L + + YR RA + H Sbjct: 101 GCSMQHLDMRAQVAIKQRVLEDNLWHLAKLRAEAMFAPIHGPSWGYRYRARLTVRHVAKK 160 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115 + ++++ + ++A+++ + + +R ++ QI+ Sbjct: 161 GGVLVGFHEKKSSYVADMTSCEVLPPHVSAMLVPLRRLVEQL-SIRDRMPQIELAVGARV 219 Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD--RDYVDERLTV 173 A+V R+L+ LR+ + Q L + T +D L Sbjct: 220 TALVL----RVLEPINAADEALLREFADTHRVQFWLQPKGPDTVAPFYPLDAQLDYTLPE 275 Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFD 232 G + ++ FTQ N IN ++ L +GD +L+L+CG GNF+L LAR Sbjct: 276 FGIRMPFK--PTDFTQVNHQINRVLVGRALRLLAPERGDRMLDLFCGIGNFTLPLARLAR 333 Query: 233 RVLAVEIAKPSVEAARYNIAANHVN-NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291 V+ +E + A N N V+ + + E T R Sbjct: 334 EVVGIEGSDALTARALENAKENGVDGHTSFACRNLFEVTADDLRAL------------GA 381 Query: 292 FKTIFVDPPRSGL---DDATVGMVQ-----AYPHILYISCNPDSLCRDLSIL--STTHTI 341 F VDPPR G A + Q I+Y+SCNP +L RD +L + + Sbjct: 382 FDKFLVDPPREGALAVSKALAEIAQSGAGPLPARIVYVSCNPSTLARDAGLLVHEAGYRL 441 Query: 342 ERLALFDQFPYTRHMECGVLLVR 364 + + + FP+T H+E L R Sbjct: 442 KGAGVVNMFPHTSHVESIALFER 464 >gi|197121913|ref|YP_002133864.1| (uracil-5)-methyltransferase [Anaeromyxobacter sp. K] gi|196171762|gb|ACG72735.1| (Uracil-5)-methyltransferase [Anaeromyxobacter sp. K] Length = 438 Score = 216 bits (549), Expect = 6e-54, Method: Composition-based stats. Identities = 88/374 (23%), Positives = 140/374 (37%), Gaps = 30/374 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-------VPNLQIFRSEPIHYRMRAEFHIWHD 54 L Y QLA K L + + + P+ YR RA+FH HD Sbjct: 84 GCEWLHVAYPAQLAAKERSLHEALRRIGKLEPGSYPARPIVPSPSPLRYRARAKFH--HD 141 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQS 114 + F +++ E +R+ S ++AL + + L + +++ + Sbjct: 142 RAAGRLVFFRRRSHEPVRLRECHLLSPGLDALREAVGPALAAAK-LSPREVALEWSDAAE 200 Query: 115 DQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYV--DERLT 172 A L L + R L A L+ +A + D V R Sbjct: 201 RGAAWLL-----LPEVTAPVRARAEALLRAVPSLQGLVLQAEGGQPVTAGDPVLRQARAP 255 Query: 173 VAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD 232 R + F Q N G N ++E L ++LEL+CG GNF+ L+ Sbjct: 256 GRPEAGTQRSRPDVFQQANRGANARLVETALELLAPAGEEVLELHCGAGNFTGPLSERAR 315 Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292 V AVE+ P+++ AR A NV+ + +A RE + RF Sbjct: 316 SVSAVEVQGPALDLAR---ADLGGRNVRFFAGDALALARAFGRE--------AGPGARRF 364 Query: 293 KTIFVDPPRSGLDDATVGMV-QAYPHILYISCNPDSLCRDL-SILSTTHTIERLALFDQF 350 +DPPR G + P +Y+SC+P + RDL + + + + + D F Sbjct: 365 GAALLDPPREGARGIGPALRDLGVPRAVYVSCDPATFARDLRACVEAGYRVAAVVPVDMF 424 Query: 351 PYTRHMECGVLLVR 364 P T H+E LL R Sbjct: 425 PQTHHVEGVALLER 438 >gi|237812554|ref|YP_002897005.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia pseudomallei MSHR346] gi|237504204|gb|ACQ96522.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia pseudomallei MSHR346] Length = 485 Score = 216 bits (549), Expect = 6e-54, Method: Composition-based stats. Identities = 80/383 (20%), Positives = 138/383 (36%), Gaps = 39/383 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWH--DG 55 ++ Q+A K L + + YR RA + H Sbjct: 121 GCSMQHLDMRAQVAIKQRVLEDNLWHLAKLRAEAMFAPIHGPSWGYRYRARLTVRHVAKK 180 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115 + ++++ + ++A+++ + + +R ++ QI+ Sbjct: 181 GGVLVGFHEKKSSYVADMTSCEVLPPHVSAMLVPLRRLVEQL-SIRDRMPQIELAVGARV 239 Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD--RDYVDERLTV 173 A+V R+L+ LR+ + Q L + T +D L Sbjct: 240 TALVL----RVLEPINAADEALLREFADTHRVQFWLQPKGPDTVAPFYPLDAQLDYTLPE 295 Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFD 232 G + ++ FTQ N IN ++ L +GD +L+L+CG GNF+L LAR Sbjct: 296 FGIRMPFK--PTDFTQVNHQINRVLVGRALRLLAPERGDRMLDLFCGIGNFTLPLARLAR 353 Query: 233 RVLAVEIAKPSVEAARYNIAANHVN-NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291 V+ +E + A N N V+ + + E T R Sbjct: 354 EVVGIEGSDALTARALENAKENGVDGHTSFACRNLFEVTADDLRAL------------GA 401 Query: 292 FKTIFVDPPRSGL---DDATVGMVQ-----AYPHILYISCNPDSLCRDLSIL--STTHTI 341 F VDPPR G A + Q I+Y+SCNP +L RD +L + + Sbjct: 402 FDKFLVDPPREGALAVSKALAEIAQSGAGPLPARIVYVSCNPSTLARDAGLLVHEAGYRL 461 Query: 342 ERLALFDQFPYTRHMECGVLLVR 364 + + + FP+T H+E L R Sbjct: 462 KGAGVVNMFPHTSHVESIALFER 484 >gi|255536105|ref|YP_003096476.1| RNA methyltransferase, TrmA family [Flavobacteriaceae bacterium 3519-10] gi|255342301|gb|ACU08414.1| RNA methyltransferase, TrmA family [Flavobacteriaceae bacterium 3519-10] Length = 469 Score = 216 bits (549), Expect = 7e-54, Method: Composition-based stats. Identities = 65/393 (16%), Positives = 137/393 (34%), Gaps = 52/393 (13%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63 YE+QL K D + + + E YR + EF + + + Sbjct: 91 SYEKQLDIKQDEVFNHIKRIGGFEDFETMPILGSDEQYFYRNKMEFSFSNARWLTQYEIS 150 Query: 64 DQQT---------------KERMRIDYFMPGSLLINALMIEMMATIRLEPL-------LR 101 ++ + + + N + + + L Sbjct: 151 SEENFGNRNALGFHIPGMWSKILDLKECWLQEDPSNYIRLAVNQYAVANGLEFFDVRNQE 210 Query: 102 AKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGR---ANKT 158 L + + + +V L +E ++L D L QI+ + + + Sbjct: 211 GFLRTLMLRQNSKGEWMVLF----QLFRDEQENRVKLFDFLLKEFPQIKSLVYCINSKQN 266 Query: 159 KICLDR----DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL 214 D+ + + L L ++ SF Q N + + L +++ Sbjct: 267 DSIYDQHVVTYFGEGFLMEEMDGLQFKIGPKSFFQTNYKQALQLYRKTLEFADLKGDEVV 326 Query: 215 -ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273 +LY G G + +A++ +V+ +E + ++ AA+ + N ++N K+ Sbjct: 327 YDLYTGTGTIAQYVAKNAKKVIGIESVQEAINAAKEHAKLNGLDNCTFYCGDMKDIFND- 385 Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRD 331 + + + + DPPR G+ V + A I+Y+SCN + RD Sbjct: 386 ----------EFLANHPKADVLITDPPRDGMHQKVVEQILKLAPEKIVYVSCNSATQARD 435 Query: 332 LSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 ++++ + + ++ D FP T H+E LLV+ Sbjct: 436 MALMKDHYRLVKILPVDMFPQTHHVENIALLVK 468 >gi|67639889|ref|ZP_00438718.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia mallei GB8 horse 4] gi|254199956|ref|ZP_04906322.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia mallei FMH] gi|254206289|ref|ZP_04912641.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia mallei JHU] gi|76580093|gb|ABA49568.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia pseudomallei 1710b] gi|147749552|gb|EDK56626.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia mallei FMH] gi|147753732|gb|EDK60797.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia mallei JHU] gi|238520500|gb|EEP83959.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia mallei GB8 horse 4] Length = 434 Score = 216 bits (549), Expect = 7e-54, Method: Composition-based stats. Identities = 80/383 (20%), Positives = 138/383 (36%), Gaps = 39/383 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWH--DG 55 ++ Q+A K L + + YR RA + H Sbjct: 70 GCSMQHLDMRAQVAIKQRVLEDNLWHLAKLRAEAMFAPIHGPSWGYRYRARLTVRHVAKK 129 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115 + ++++ + ++A+++ + + +R ++ QI+ Sbjct: 130 GGVLVGFHEKKSSYVADMTSCEVLPPHVSAMLVPLRRLVEQL-SIRDRMPQIELAVGARV 188 Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD--RDYVDERLTV 173 A+V R+L+ LR+ + Q L + T +D L Sbjct: 189 TALVL----RVLEPINAADEALLREFADTHRVQFWLQPKGPDTVAPFYPLDAQLDYTLPE 244 Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFD 232 G + ++ FTQ N IN ++ L +GD +L+L+CG GNF+L LAR Sbjct: 245 FGIRMPFK--PTDFTQVNHQINRVLVGRALRLLAPERGDRVLDLFCGIGNFTLPLARLAR 302 Query: 233 RVLAVEIAKPSVEAARYNIAANHVN-NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291 V+ +E + A N N V+ + + E T R Sbjct: 303 EVVGIEGSDALTARALENAKENGVDGHTSFACRNLFEVTADDLRAL------------GA 350 Query: 292 FKTIFVDPPRSGL---DDATVGMVQ-----AYPHILYISCNPDSLCRDLSIL--STTHTI 341 F VDPPR G A + Q I+Y+SCNP +L RD +L + + Sbjct: 351 FDKFLVDPPREGALAVSKALAEIAQSGAGPLPARIVYVSCNPSTLARDAGLLVHEAGYRL 410 Query: 342 ERLALFDQFPYTRHMECGVLLVR 364 + + + FP+T H+E L R Sbjct: 411 KGAGVVNMFPHTSHVESIALFER 433 >gi|171058602|ref|YP_001790951.1| 23S rRNA 5-methyluridine methyltransferase [Leptothrix cholodnii SP-6] gi|170776047|gb|ACB34186.1| RNA methyltransferase, TrmA family [Leptothrix cholodnii SP-6] Length = 498 Score = 216 bits (549), Expect = 7e-54, Method: Composition-based stats. Identities = 85/386 (22%), Positives = 138/386 (35%), Gaps = 43/386 (11%) Query: 12 QQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQT 67 Q+A K L + + YR RA + + ++ + Sbjct: 93 AQVAVKQRTLEDNLWHLGKVRTERVLRPVEGPTWGYRYRARLSVRYVAKKGVVLVGFHER 152 Query: 68 KERMRID--YFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQS----DQAIVTL 121 K R D I+A+++ + I R +L QI+ +S + +V Sbjct: 153 KSRYVADMRSCAVLPPHISAMLLPLRDLIDSMEA-RERLPQIELAVGESSQGLENVLVNA 211 Query: 122 IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVD---ERLTVAGRTL 178 + R L+ A RLRD Q L + +T LD L G T+ Sbjct: 212 LVLRNLEPLSAADAQRLRDFAAIHPVQWWLQPKGPETVHLLDEGVGPKLAYSLPEYGVTM 271 Query: 179 IYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAV 237 ++ FTQ N IN ++ L +++ +CG GNF+L LA VL + Sbjct: 272 PFK--PTDFTQVNHHINRVLVGKALGLLKVQGNERVIDWFCGLGNFTLPLATQAREVLGI 329 Query: 238 EIAKPSVEAARYNIAANHV-NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296 E ++ V+ +R N N + +N + E + A Sbjct: 330 EGSETLVQRSRENAQLNGLAHNATFAARNLFELSPADLAAY------------GSADRWL 377 Query: 297 VDPPRSGLDD--ATVGMVQAYP--------HILYISCNPDSLCRDLSIL--STTHTIERL 344 +DPPR G + V+ P I+Y+SCNP +L RD +L + Sbjct: 378 IDPPREGAFALSKALAEVRQQPIDGYTPPQRIVYVSCNPSTLARDAGLLVHQAGYRCTAA 437 Query: 345 ALFDQFPYTRHMECGVLLVRKPSGWH 370 + FP+T H+E + R GW Sbjct: 438 GAVNMFPHTAHVESIAVFERID-GWQ 462 >gi|221198086|ref|ZP_03571132.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia multivorans CGD2M] gi|221204355|ref|ZP_03577372.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia multivorans CGD2] gi|221175212|gb|EEE07642.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia multivorans CGD2] gi|221182018|gb|EEE14419.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia multivorans CGD2M] Length = 503 Score = 216 bits (549), Expect = 7e-54, Method: Composition-based stats. Identities = 79/380 (20%), Positives = 138/380 (36%), Gaps = 33/380 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-IFRS---EPIHYRMRAEFHIWH--DG 55 ++ Q+A K L + + IF YR RA + H Sbjct: 139 GCSMQHLDMRAQVAIKQRVLEDNLWHLAKLRAESIFSPIHGPSWGYRYRARLTVRHVAKK 198 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115 + ++++ + ++A+++ + + +R ++ QI+ Sbjct: 199 GGVLVGFHEKKSSYVADMTSCEVLPPHVSAMLVPLRRLVERL-SIRDRMPQIELAVGSQV 257 Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175 A+V + + +A E +R H ++ +Q G T +D L G Sbjct: 258 TALVLRVLEPI--NANDEALLRAFADEHKVQFWLQPKGPDTVTPFYPLDVSLDYTLPEFG 315 Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRV 234 + ++ FTQ N IN ++ L + D +L+L+CG GNF+L LAR V Sbjct: 316 IRMPFK--PTDFTQVNHQINRVLVGRALRLLAPARDDRVLDLFCGIGNFTLPLARLAREV 373 Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294 + +E ++ A N N V+ F D F Sbjct: 374 VGIEGSETLTTRALANARENGVDGHTTFAC-----------RNLFEVTADDIRALGAFDK 422 Query: 295 IFVDPPRSGL---DDATVGMVQ-----AYPHILYISCNPDSLCRDLSIL--STTHTIERL 344 +DPPR G A + Q I+Y+SCNP +L RD +L + ++ Sbjct: 423 FLIDPPREGALAVSKALADIAQSGEGPLPKRIVYVSCNPSTLARDAGLLVHEAGYRLKGA 482 Query: 345 ALFDQFPYTRHMECGVLLVR 364 + + FP T H+E L R Sbjct: 483 GVVNMFPNTSHVESIALFER 502 >gi|217972409|ref|YP_002357160.1| 23S rRNA 5-methyluridine methyltransferase [Shewanella baltica OS223] gi|254766921|sp|B8E8S1|RUMA_SHEB2 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|217497544|gb|ACK45737.1| RNA methyltransferase, TrmA family [Shewanella baltica OS223] Length = 450 Score = 215 bits (548), Expect = 8e-54, Method: Composition-based stats. Identities = 78/377 (20%), Positives = 139/377 (36%), Gaps = 35/377 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRS----EPIHYRMRAEFHIWHDGDD 57 L Q K L +M F E HYR RA D + Sbjct: 91 GCDLQHMSLSGQREHKEAALLDIMAKFAGAEGGTLSPALTGEGWHYRRRARLATLFDKNT 150 Query: 58 LYH--IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115 + + + I + ++ L++ A + + +A L ++ + + + Sbjct: 151 KHLSLGFRAASSSNVVPISQCQVLAKPLSDLIVP-FAKLLNQLSAKASLGHLELIAADNG 209 Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANK------TKICLDRDYVDE 169 V I L D + +L + I L + + +D+ Sbjct: 210 HFAVLRITKALND----KDLAKLSAFAEQHQIHICLQDNEGQFQGVGAELVLPVYQLLDD 265 Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLA 228 + +L + +F Q N IN M+ + + +L+L+CG GNFSL LA Sbjct: 266 KAESDAVSLSF--TPGNFVQVNGQINKAMVAQAMDWLAPAPDERILDLFCGMGNFSLPLA 323 Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288 + V+ VE V AR N AN+++ + + + E ++ Sbjct: 324 KMGADVIGVEGVAEMVTQARVNAKANNLDKLTFYHGD---LSADLSLEPWMGKI------ 374 Query: 289 SYRFKTIFVDPPRSGLDDATVGMVQAYPH-ILYISCNPDSLCRD-LSILSTTHTIERLAL 346 + +DP R+G ++ + + P ++Y+SCNP SL RD +L + +++L L Sbjct: 375 ----DKLLLDPARAGAFESLQWLKKMKPRKVVYVSCNPASLARDSAVLLERGYRLQQLGL 430 Query: 347 FDQFPYTRHMECGVLLV 363 D FP T H+E L Sbjct: 431 IDMFPQTHHIEAMALFE 447 >gi|319775797|ref|YP_004138285.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Haemophilus influenzae F3047] gi|317450388|emb|CBY86604.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Haemophilus influenzae F3047] Length = 438 Score = 215 bits (548), Expect = 8e-54, Method: Composition-based stats. Identities = 85/364 (23%), Positives = 148/364 (40%), Gaps = 32/364 (8%) Query: 11 EQQLAEKVDRLRQMMLAFQVPNLQIFRS----EPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66 E Q K L + + Q F+ + YR R +W + + M +Q Sbjct: 98 EMQRKAKESALFKRLSKLQS-EPISFQPMICGDAWAYRRRVRLSLWFNPNTKQIEMGFRQ 156 Query: 67 TK--ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 + + I IN L+ ++ A + + +L I+ + + + A++ L Y Sbjct: 157 KNANDLIPIQSCEVAEPAINHLLPKLTALLEQFSAPK-QLGHIELVAADNGVAML-LRYT 214 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + L + R ++ A + ++ L ++++ ++++Y D + Sbjct: 215 KKLAEIDRTLLLKF-----AEQEKLMLFLQSDEG---IEQNYGDAPYYQFSDGIKLHFDI 266 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 F Q N +N M+ L + Q D +L+L+CG GNF+L LA+ + +E Sbjct: 267 RDFIQVNRALNERMVNTALDWLELNQQDCVLDLFCGMGNFTLPLAKRVKSAVGIEGVFEM 326 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 V+ A N N + N+ + + D F I +DPPRSG Sbjct: 327 VQKAAQNAERNQIKNITFFQADLGQ------------SFVDQPWSHQSFNKILLDPPRSG 374 Query: 304 LDDATVGMVQAY-PHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVL 361 A + + ILY+SCNP +L RD IL + IE+ A+ D FP+T H+E L Sbjct: 375 AAFALNALCELNAEKILYVSCNPATLVRDAEILRDFGYKIEKSAVIDMFPHTGHLESITL 434 Query: 362 LVRK 365 K Sbjct: 435 FTTK 438 >gi|120598069|ref|YP_962643.1| 23S rRNA 5-methyluridine methyltransferase [Shewanella sp. W3-18-1] gi|143582575|sp|A1RHE4|RUMA_SHESW RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|120558162|gb|ABM24089.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Shewanella sp. W3-18-1] Length = 450 Score = 215 bits (548), Expect = 9e-54, Method: Composition-based stats. Identities = 81/377 (21%), Positives = 139/377 (36%), Gaps = 35/377 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN----LQIFRSEPIHYRMRAEFHIWHDGDD 57 L Q K L +M F E HYR RA D + Sbjct: 91 GCDLQHMSLSGQREHKEAALLDIMAKFAGTEGGALSPALTGEGWHYRRRARLATLFDKNT 150 Query: 58 LYH--IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115 + + + I + ++ L++ A + + +A L ++ + + + Sbjct: 151 KHLSLGFRAASSSNVVPISQCQVLAKPLSDLIVP-FAKLLNQLSAKASLGHLELIAADNG 209 Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANK------TKICLDRDYVDE 169 V I L D + +L + I L + + +DE Sbjct: 210 HFAVLRITKALND----KDLAKLSAFAEQHQIYICLQDNEGQFQGVGVELVLPVYQLLDE 265 Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLA 228 +L + +F Q N+ IN M+ + + +L+L+CG GNFSL LA Sbjct: 266 NAQSDAVSLSF--TPGNFVQVNSQINKAMVAQAMDWLAPAPDERILDLFCGMGNFSLPLA 323 Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288 + V+ VE V AR N AN+++ + + + E ++ Sbjct: 324 KMGADVIGVEGVAEMVSQARVNAKANNLDKLTFYHGD---LSADLSLEPWMGKI------ 374 Query: 289 SYRFKTIFVDPPRSGLDDATVGMVQAYPH-ILYISCNPDSLCRD-LSILSTTHTIERLAL 346 + +DP R+G ++ + + P +LY+SCNP SL RD +L + ++RL L Sbjct: 375 ----DKLLLDPARAGAFESLQWLKKMKPRKVLYVSCNPASLARDSAVLLERGYRLQRLGL 430 Query: 347 FDQFPYTRHMECGVLLV 363 D FP T H+E L Sbjct: 431 IDMFPQTHHIEAMALFE 447 >gi|288941731|ref|YP_003443971.1| TrmA family RNA methyltransferase [Allochromatium vinosum DSM 180] gi|288897103|gb|ADC62939.1| RNA methyltransferase, TrmA family [Allochromatium vinosum DSM 180] Length = 440 Score = 215 bits (548), Expect = 9e-54, Method: Composition-based stats. Identities = 79/373 (21%), Positives = 130/373 (34%), Gaps = 26/373 (6%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWH--DG 55 L E Q+ K D L + + +E YR +A + H Sbjct: 84 GCALQHLNPEAQIRVKHDSLADVFERIGKVTPERWLDPLTAESWGYRRKARLGVRHVVKK 143 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115 +++ + + + + ATI +R + QI+ Sbjct: 144 GRTLVGFRERRNSFLADLRRCEVLHPQVGERLETLAATIETL-SIRDHVPQIEMAMGDGP 202 Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175 +V R++ E RL + + I L + L V ++ Sbjct: 203 CVLV----FRVMQTPTPEDEARLLELGQREGFHIYLQDGGIDSIRPLPGQEVALSYSLPN 258 Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRV 234 + + + FTQ N +N M++ L D +L+L+CG GNF+L LAR V Sbjct: 259 HGVEIGFLPSDFTQVNLELNRRMVDQALDLLAPESDDAVLDLFCGLGNFTLPLARRSAEV 318 Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294 + VE VE A N N + NV+ + RF Sbjct: 319 VGVEGDAGLVERACANAERNGLTNVQFHVAD-----------LQAELSTAAPWTQQRFTK 367 Query: 295 IFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSIL--STTHTIERLALFDQFP 351 +DPPRSG + + + ++Y+SC P +L RD L + + + D FP Sbjct: 368 ALIDPPRSGAWEVLDWLPRLGVERLVYVSCYPTTLARDADRLVNELGYRLRAAGVMDMFP 427 Query: 352 YTRHMECGVLLVR 364 +T H+E L R Sbjct: 428 HTSHVESMALFER 440 >gi|291320650|ref|YP_003515915.1| hypothetical protein MAGa7590 [Mycoplasma agalactiae] gi|290752986|emb|CBH40962.1| Hypothetical RNA methyltransferase [Mycoplasma agalactiae] Length = 446 Score = 215 bits (548), Expect = 9e-54, Method: Composition-based stats. Identities = 76/378 (20%), Positives = 149/378 (39%), Gaps = 31/378 (8%) Query: 2 SGTLLIDQ--YEQQLAEKVDRLRQMMLA--FQVPNLQIFRSE-PIHYRMRAEFHIWHDGD 56 SG+ + Y QL K + ++Q+ L I +S+ YR + + + Sbjct: 80 SGSAPLANISYSNQLEFKENFVKQLFKRNIHYTDILPILKSDYEWRYRNKLLLFTKNVQN 139 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLT---SQ 113 + ++++ + + D + S ++I + I + + +T S Sbjct: 140 TIKIGLYEKNSHNLIEQDSYDLVSNEAENVLIWLSKNINKYDCFKNVKNALTGITLRESY 199 Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTV 173 +++ I+ D ++ + + + ++ ++ Y+ +++ Sbjct: 200 ANKNIMLYFTTSKAFDLSKQFVNDIAKEFDHIETIMVIVNDKVVYSYLSEKPYLIDKIG- 258 Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLARHFD 232 ++ NSF Q N+ + +L + + L+ YCG G SL LA+ Sbjct: 259 ---KFSFKYNWNSFFQINSNQTEKLYSLLLDNLNLDKSKVVLDAYCGIGTISLFLAQKAK 315 Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292 +V +EI K +V A+ N N ++N + + +K ID + + Sbjct: 316 KVYGLEIVKEAVINAKENALDNSIHNTEFISGDV---------------IKTIDSINEKI 360 Query: 293 KTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQ 349 T+ VDPPRSGL + + I YISCNP ++CRD+ L + + L D Sbjct: 361 DTVVVDPPRSGLSSEFLNKIIDIKPEEIGYISCNPHTMCRDIDQLIKAGYELSFLRPCDM 420 Query: 350 FPYTRHMECGVLLVRKPS 367 F T H+E +L K + Sbjct: 421 FSQTYHIEMVAVLKLKDT 438 >gi|187928146|ref|YP_001898633.1| 23S rRNA 5-methyluridine methyltransferase [Ralstonia pickettii 12J] gi|226725385|sp|B2U9U3|RUMA_RALPJ RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|187725036|gb|ACD26201.1| RNA methyltransferase, TrmA family [Ralstonia pickettii 12J] Length = 450 Score = 215 bits (547), Expect = 9e-54, Method: Composition-based stats. Identities = 78/386 (20%), Positives = 137/386 (35%), Gaps = 42/386 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWH--DG 55 ++ Q+A K L + + YR RA + H Sbjct: 83 GCSMQHLDSRAQVAIKQRVLEDDLWHLAKLRPDVVFRPIAGPDWGYRYRARLTVRHVAAK 142 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115 + ++++ + ++AL++ + + ++ ++ QI+ Q Sbjct: 143 GGVLVGFHERKSSYVADMTSCEVLPPHVSALLVPLRELVGRLSIV-QRMPQIELAVGQDV 201 Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC---LDRDYVDERLT 172 A+V R L+ E LR Q L + T LDR + L Sbjct: 202 TALVL----RNLEPITAEDEAELRAFADHHNIQFWLQPKGPDTVYPFYPLDR-TLTYTLP 256 Query: 173 VAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHF 231 G T+ ++ FTQ N IN ++ L GD LL+L+CG GNF+L +A Sbjct: 257 EFGITMPFK--PTDFTQVNHQINRVLMSRALKLLDAQPGDRLLDLFCGIGNFTLPMATRA 314 Query: 232 DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291 V+ +E ++ A N N ++ + F D + Sbjct: 315 REVMGIEGSEALTTRALANAQHNGLHT-----------KTSFACRNLFEVSADDVAALGK 363 Query: 292 FKTIFVDPPRSGLDDATVGMVQ-----------AYPHILYISCNPDSLCRDLSIL--STT 338 F +DPPR G + + + I+Y+SCNP +L RD +L Sbjct: 364 FDRWLIDPPREGALAVSKALAELSQSGGDAADLLPKRIIYVSCNPATLARDAGLLVHEAG 423 Query: 339 HTIERLALFDQFPYTRHMECGVLLVR 364 + + + + FP+T H+E + R Sbjct: 424 YRLAGAGVVNMFPHTSHVESMAVFER 449 >gi|319427232|gb|ADV55306.1| RNA methyltransferase, TrmA family [Shewanella putrefaciens 200] Length = 450 Score = 215 bits (547), Expect = 1e-53, Method: Composition-based stats. Identities = 79/377 (20%), Positives = 138/377 (36%), Gaps = 35/377 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN----LQIFRSEPIHYRMRAEFHIWHDGDD 57 L Q K L +M F E +YR RA D + Sbjct: 91 GCDLQHMSLSGQREHKEAALLDIMAKFAGTEGGALSPALTGEGWYYRRRARLATLFDKNT 150 Query: 58 LYH--IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115 + + + I + ++ L++ A + + +A L ++ + + + Sbjct: 151 KHLSLGFRAASSSNVVPISQCQVLAKPLSDLIVP-FAKLLNQLSAKASLGHLELIAADNG 209 Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANK------TKICLDRDYVDE 169 V I L D + +L + I L + + +DE Sbjct: 210 HFAVLRITKALND----KDLTKLSAFAEQHQIHICLQDNEGQFQGVGVELVLPVYQLLDE 265 Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLA 228 +L + +F Q N IN M+ + + +L+L+CG GNFSL LA Sbjct: 266 NAQSDAVSLSF--TPGNFVQVNGQINKAMVAQAMDWLAPAPDERILDLFCGMGNFSLPLA 323 Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288 + V+ VE V AR N AN+++ + + + E ++ Sbjct: 324 KMGAEVIGVEGVAEMVSQARVNAKANNLDKLTFYHGD---LSADLSLEPWMGKI------ 374 Query: 289 SYRFKTIFVDPPRSGLDDATVGMVQAYPH-ILYISCNPDSLCRD-LSILSTTHTIERLAL 346 + +DP R+G ++ + + P ++Y+SCNP SL RD +L + ++RL L Sbjct: 375 ----DKLLLDPARAGAFESLQWLKKMKPRKVVYVSCNPASLARDSAVLLERGYRLQRLGL 430 Query: 347 FDQFPYTRHMECGVLLV 363 D FP T H+E L Sbjct: 431 IDMFPQTHHIEAMALFE 447 >gi|329123639|ref|ZP_08252199.1| 23S rRNA (uracil-5-)-methyltransferase [Haemophilus aegyptius ATCC 11116] gi|327469838|gb|EGF15303.1| 23S rRNA (uracil-5-)-methyltransferase [Haemophilus aegyptius ATCC 11116] Length = 438 Score = 215 bits (547), Expect = 1e-53, Method: Composition-based stats. Identities = 87/364 (23%), Positives = 152/364 (41%), Gaps = 32/364 (8%) Query: 11 EQQLAEKVDRLRQMMLAFQVPNLQIFRS----EPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66 E Q K L + + Q F+ + YR R +W + M +Q Sbjct: 98 EMQRKAKESALFKRLSKLQS-EPISFQPMICGDAWAYRRRVRLSLWFNPSTKQIDMGFRQ 156 Query: 67 --TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 T + + + IN L+ ++ A + + +L I+ + + + A++ L Y Sbjct: 157 KNTNDLIPVQSCEVAEPAINYLLPKLTALLEKFSAPK-QLGHIELVAADNGVAML-LRYT 214 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + L + R ++ A + ++ L +++K +++ Y D + Sbjct: 215 KNLAEIDRTLLLKF-----AEQEKLMLFLQSDKG---IEQIYGDAPYYQFSDGIKLHFDI 266 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 F Q N+ +N M+ L + Q D +L+L+CG GNF+L LA+ + +E Sbjct: 267 RDFIQVNSALNEPMVNTALDWLELSQQDCVLDLFCGMGNFTLPLAKRVKSAVGIEGVFEM 326 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 V+ A N N + N++ + Q+ + N+ F I +DPPRSG Sbjct: 327 VQKAAQNAERNQIKNIEFFQAD---LDQSFVEQPWANQ---------SFNKILLDPPRSG 374 Query: 304 LDDATVGMVQAY-PHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVL 361 A + + ILY+SCNP +L RD IL + IE+ A+ D FP+T H+E L Sbjct: 375 AAFALNALCELKAEKILYVSCNPATLVRDAEILCDFGYKIEKSAVIDMFPHTGHLESITL 434 Query: 362 LVRK 365 K Sbjct: 435 FTTK 438 >gi|126175348|ref|YP_001051497.1| 23S rRNA 5-methyluridine methyltransferase [Shewanella baltica OS155] gi|226725386|sp|A3D7B5|RUMA_SHEB5 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|125998553|gb|ABN62628.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Shewanella baltica OS155] Length = 450 Score = 215 bits (547), Expect = 1e-53, Method: Composition-based stats. Identities = 78/377 (20%), Positives = 139/377 (36%), Gaps = 35/377 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEP----IHYRMRAEFHIWHDGDD 57 L Q K L +M F E HYR RA D + Sbjct: 91 GCDLQHMSLSGQREHKEAALLDIMAKFAGAEGGTLSPELTGEGWHYRRRARLATLFDKNT 150 Query: 58 LYH--IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115 + + + I + ++ L++ A + + +A L ++ + + + Sbjct: 151 KHLSLGFRAASSSNVVPISQCQVLAKPLSDLIVP-FAKLLNQLTAKASLGHLELIAADNG 209 Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANK------TKICLDRDYVDE 169 V I L D + +L + I L + + +D+ Sbjct: 210 HFAVLRITKALND----KDLAKLSAFAEQHQIHICLQDNEGQFQGVGAELVLPVYQLLDD 265 Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLA 228 + +L + +F Q N IN M+ + + +L+L+CG GNFSL LA Sbjct: 266 KAESDAVSLSF--TPGNFVQVNGQINKAMVAQAMDWLAPALDERILDLFCGMGNFSLPLA 323 Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288 + V+ VE V AR N AN+++ + + + E ++ Sbjct: 324 KMGADVIGVEGVAEMVTQARVNAKANNLDKLTFFHGD---LSADLSLEPWMGKI------ 374 Query: 289 SYRFKTIFVDPPRSGLDDATVGMVQAYPH-ILYISCNPDSLCRD-LSILSTTHTIERLAL 346 + +DP R+G ++ + + P ++Y+SCNP SL RD +L + +++L L Sbjct: 375 ----DKLLLDPARAGAFESLQWLKKMKPRKVVYVSCNPASLARDSAVLLERGYRLQQLGL 430 Query: 347 FDQFPYTRHMECGVLLV 363 D FP T H+E L Sbjct: 431 IDMFPQTHHIEAMALFE 447 >gi|304410178|ref|ZP_07391797.1| RNA methyltransferase, TrmA family [Shewanella baltica OS183] gi|307302111|ref|ZP_07581869.1| RNA methyltransferase, TrmA family [Shewanella baltica BA175] gi|304351587|gb|EFM15986.1| RNA methyltransferase, TrmA family [Shewanella baltica OS183] gi|306914149|gb|EFN44570.1| RNA methyltransferase, TrmA family [Shewanella baltica BA175] Length = 450 Score = 215 bits (547), Expect = 1e-53, Method: Composition-based stats. Identities = 78/377 (20%), Positives = 139/377 (36%), Gaps = 35/377 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN----LQIFRSEPIHYRMRAEFHIWHDGDD 57 L Q K L +M F E HYR RA D + Sbjct: 91 GCDLQHMSLSGQREHKEAALLDIMAKFAGAEGGALSPALTGEGWHYRRRARLATLFDKNT 150 Query: 58 LYH--IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115 + + + I + ++ L++ A + + +A L ++ + + + Sbjct: 151 KHLSLGFRAASSSNVVPISQCQVLAKPLSDLIVP-FAKLLNQLSAKASLGHLELIAADNG 209 Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANK------TKICLDRDYVDE 169 V I L D + +L + I L + + +D+ Sbjct: 210 HFAVLRITKALND----KDLAKLSAFAEQHQIHICLQDNEGQFQGVGAELVLPVYQLLDD 265 Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLA 228 + +L + +F Q N IN M+ + + +L+L+CG GNFSL LA Sbjct: 266 KAESDAVSLSF--TPGNFVQVNGQINKAMVAQAMDWLAPAPDERILDLFCGMGNFSLPLA 323 Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288 + V+ VE V AR N AN+++ + + + E ++ Sbjct: 324 KMGADVIGVEGVAEMVTQARVNAKANNLDKLTFYHGD---LSADLSLEPWMGKI------ 374 Query: 289 SYRFKTIFVDPPRSGLDDATVGMVQAYPH-ILYISCNPDSLCRD-LSILSTTHTIERLAL 346 + +DP R+G ++ + + P ++Y+SCNP SL RD +L + +++L L Sbjct: 375 ----DKLLLDPARAGAFESLQWLKKMKPRKVVYVSCNPASLARDSAVLLERGYRLQQLGL 430 Query: 347 FDQFPYTRHMECGVLLV 363 D FP T H+E L Sbjct: 431 IDMFPQTHHIEAMALFE 447 >gi|16272285|ref|NP_438497.1| 23S rRNA 5-methyluridine methyltransferase [Haemophilus influenzae Rd KW20] gi|260581201|ref|ZP_05849020.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Haemophilus influenzae RdAW] gi|1723812|sp|P44643|RUMA_HAEIN RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|1573302|gb|AAC21995.1| RNA methyltransferase, putative [Haemophilus influenzae Rd KW20] gi|260092126|gb|EEW76070.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Haemophilus influenzae RdAW] Length = 438 Score = 215 bits (547), Expect = 1e-53, Method: Composition-based stats. Identities = 87/364 (23%), Positives = 152/364 (41%), Gaps = 32/364 (8%) Query: 11 EQQLAEKVDRLRQMMLAFQVPNLQIFRS----EPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66 E Q K L + + Q F+ + YR R +W + M +Q Sbjct: 98 EMQRKAKESALFKRLSKLQS-EPISFQPMICGDAWAYRRRVRLSLWFNPSTKQIEMGFRQ 156 Query: 67 --TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 T + + + IN L+ ++ A + + +L I+ + + + A++ L Y Sbjct: 157 KNTNDLIPVQSCEVAEPAINYLLPKLTALLEKFSAPK-QLGHIELVAADNGVAML-LRYT 214 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + L + R ++ A + ++ L +++K +++ Y D + Sbjct: 215 KNLAEIDRTLLLKF-----AEQEKLMLFLQSDKG---IEQIYGDAPYYQFSDGIKLHFDI 266 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 F Q N+ +N M+ L + Q D +L+L+CG GNF+L LA+ + +E Sbjct: 267 RDFIQVNSALNEPMVNTALDWLELSQQDCVLDLFCGMGNFTLPLAKRVKSAVGIEGVFEM 326 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 V+ A N N + N++ + Q+ + N+ F I +DPPRSG Sbjct: 327 VQKAAQNAERNQIKNIEFFQAD---LDQSFVEQPWANQ---------SFNKILLDPPRSG 374 Query: 304 LDDATVGMVQAY-PHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVL 361 A + + ILY+SCNP +L RD IL + IE+ A+ D FP+T H+E L Sbjct: 375 AAFALNALCELKAEKILYVSCNPATLVRDAEILCNFGYKIEKSAVIDMFPHTGHLESITL 434 Query: 362 LVRK 365 K Sbjct: 435 FTTK 438 >gi|167587043|ref|ZP_02379431.1| RNA methyltransferase, TrmA family protein [Burkholderia ubonensis Bu] Length = 451 Score = 215 bits (547), Expect = 1e-53, Method: Composition-based stats. Identities = 77/380 (20%), Positives = 138/380 (36%), Gaps = 33/380 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWH--DG 55 ++ Q+A K L +L + YR RA + + Sbjct: 87 GCSMQHLDMRAQVAIKQRVLEDNLLHLAKLRAETMFAPIHGPSWGYRYRARLTVRNVVKK 146 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115 + ++++ + ++A+++ + + +R ++ QI+ Sbjct: 147 GGVLVGFHERKSSYVADMTSCEVLPPHVSAMLVPLRRLVEGL-SIRDRMPQIELAVGSQV 205 Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175 A+V + + +A E +R H ++ +Q G T +D L G Sbjct: 206 TALVLRVLEPI--NAADEALLRAFADEHKVQFWLQPKGPDTVTPFYPLDVPLDYTLPEFG 263 Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRV 234 + ++ FTQ N IN ++ L + D +L+L+CG GNF+L LAR V Sbjct: 264 IRMPFK--PTDFTQVNHQINRVLVGRALRLLAPSRDDRVLDLFCGIGNFTLPLARLAREV 321 Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294 + +E ++ A N N V+ F D F Sbjct: 322 MGIEGSETLTTRALANARENGVDGHTTFAC-----------RNLFEVTADDIRALGAFDK 370 Query: 295 IFVDPPRSGL---DDATVGMVQ-----AYPHILYISCNPDSLCRDLSIL--STTHTIERL 344 +DPPR G A + Q I+Y+SCNP +L RD +L + ++ Sbjct: 371 FLIDPPREGALAVSKALADIAQSGEGPLPRRIVYVSCNPSTLARDAGLLVHEAGYRLKGA 430 Query: 345 ALFDQFPYTRHMECGVLLVR 364 + + FP+T H+E L R Sbjct: 431 GVVNMFPHTSHVESIALFER 450 >gi|160876396|ref|YP_001555712.1| 23S rRNA 5-methyluridine methyltransferase [Shewanella baltica OS195] gi|226725388|sp|A9KYI1|RUMA_SHEB9 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|160861918|gb|ABX50452.1| RNA methyltransferase, TrmA family [Shewanella baltica OS195] gi|315268586|gb|ADT95439.1| RNA methyltransferase, TrmA family [Shewanella baltica OS678] Length = 450 Score = 215 bits (547), Expect = 1e-53, Method: Composition-based stats. Identities = 78/377 (20%), Positives = 139/377 (36%), Gaps = 35/377 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN----LQIFRSEPIHYRMRAEFHIWHDGDD 57 L Q K L +M F E HYR RA D + Sbjct: 91 GCDLQHMSLSGQREHKEAALLDIMAKFAGAEGGALSPALTGEGWHYRRRARLATLFDKNT 150 Query: 58 LYH--IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115 + + + I + ++ L++ A + + +A L ++ + + + Sbjct: 151 KHLSLGFRAASSSNVVPISQCQVLAKPLSDLIVP-FAKLLNQLSAKASLGHLELIAADNG 209 Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANK------TKICLDRDYVDE 169 V I L D + +L + I L + + +D+ Sbjct: 210 HFAVLRITKALND----KDLAKLSAFAEQHQIHICLQDNEGQFQGVGAELVLPVYQLLDD 265 Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLA 228 + +L + +F Q N IN M+ + + +L+L+CG GNFSL LA Sbjct: 266 KAESDAVSLSF--TPGNFVQVNGQINKAMVAQAMDWLAPAPDERILDLFCGMGNFSLPLA 323 Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288 + V+ VE V AR N AN+++ + + + E ++ Sbjct: 324 KMGADVIGVEGVAEMVTQARVNAKANNLDKLTFYHGD---LSADLSLEPWMGKI------ 374 Query: 289 SYRFKTIFVDPPRSGLDDATVGMVQAYPH-ILYISCNPDSLCRD-LSILSTTHTIERLAL 346 + +DP R+G ++ + + P ++Y+SCNP SL RD +L + +++L L Sbjct: 375 ----DKLLLDPARAGAFESLQWLKKMKPRKVVYVSCNPASLARDSAVLLERGYRLQQLGL 430 Query: 347 FDQFPYTRHMECGVLLV 363 D FP T H+E L Sbjct: 431 IDMFPQTHHIEAMALFE 447 >gi|327395011|dbj|BAK12433.1| 23S rRNA 5-methyluridine methyltransferase RumA [Pantoea ananatis AJ13355] Length = 439 Score = 215 bits (547), Expect = 1e-53, Method: Composition-based stats. Identities = 78/337 (23%), Positives = 138/337 (40%), Gaps = 27/337 (8%) Query: 34 QIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ--TKERMRIDYFMPGSLLINALMIEMM 91 +I YR R + +M +Q T + + I + AL+I + Sbjct: 124 EIIAGPAWGYRRRVRLGLQWQNKTQQLLMGFRQAATNDLVDIQQCPIMVPQLEALIIPLR 183 Query: 92 ATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQL 151 + + ++ +L ++ + + + ++ R LD + +L H + + L Sbjct: 184 NCLTMLNAVK-RLGHVELVLADNGPVLLL----RHLDALSTDDIAKLERFSHQHQLMLFL 238 Query: 152 IGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG 211 + + DR LI+ F Q N +N M+ +A Sbjct: 239 DDGSETLRASGDR---QPFYHSHQLELIF--SPKDFIQVNDTVNQQMVAKAIAWLDLQPE 293 Query: 212 D-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270 D +L+L+CG GNF+L + + + VE V+ A YN N + NVK + + +E Sbjct: 294 DRVLDLFCGMGNFTLPVGKSVQSAVGVEGVAALVQQAEYNADVNALKNVKFFQHNLEEDV 353 Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH-ILYISCNPDSLC 329 F + +DP R+G +V+ P ++Y+SCNP +L Sbjct: 354 SR------------QPWAMQGFNKVLLDPARAGAAGVMAHVVKLSPECVVYVSCNPVTLA 401 Query: 330 RDLS-ILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 RD +LS + +ER+A+ D FP+TRH+E VL +K Sbjct: 402 RDSETLLSAGYQLERVAMLDMFPHTRHLESMVLFRKK 438 >gi|330960598|gb|EGH60858.1| 23S rRNA m(5)U1939 methyltransferase [Pseudomonas syringae pv. maculicola str. ES4326] Length = 451 Score = 214 bits (546), Expect = 1e-53, Method: Composition-based stats. Identities = 85/371 (22%), Positives = 141/371 (38%), Gaps = 30/371 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWHDGDD 57 ++ +E+QLA K L + +L + YR RA + D Sbjct: 99 GCSVQHVPHEEQLALKQRMLAEQLLRVANVTPDEWAAPLSGAELAYRRRARVAVRWDAKA 158 Query: 58 LY--HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115 +++ + ID + +M ++ ++ L ++ + S Sbjct: 159 KRLDVGFRAAASQDIVSIDECPVLVQALQPIMRQLPTMLKSFSK-PQVLGHVELFSGSS- 216 Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175 + V L + L DA L+ Q+ L G D + L Sbjct: 217 -SAVLLRHTAPLADA---DLATLQAFCSTHGAQLWLHGEGEPQPASPG-DTLGYWLEPWN 271 Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRV 234 L +R F Q NA +N M+E L G +++L+CG GNF+L LA V Sbjct: 272 LQLAWR--PGDFIQVNAAVNTAMIEQALQWLAPGPDERVMDLFCGLGNFALPLAGLAKEV 329 Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294 +AVE VE A N +N ++NV+ + + L D + F Sbjct: 330 VAVEGVATMVERAAANAMSNDLHNVQFFQADLSQ------------PLTHADWAAEGFSA 377 Query: 295 IFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPY 352 + +DPPR G + + + +LY+SCNP +L RD L + + ++R + D FP Sbjct: 378 VLLDPPRDGAFEVVRQIRKTGARRLLYVSCNPATLARDTVELVNQGYRLKRAGILDMFPQ 437 Query: 353 TRHMECGVLLV 363 T H+E L Sbjct: 438 TAHVEAMALFE 448 >gi|148827480|ref|YP_001292233.1| 23S rRNA 5-methyluridine methyltransferase [Haemophilus influenzae PittGG] gi|148718722|gb|ABQ99849.1| 23S rRNA (uracil-5-)-methyltransferase [Haemophilus influenzae PittGG] Length = 438 Score = 214 bits (546), Expect = 1e-53, Method: Composition-based stats. Identities = 87/364 (23%), Positives = 152/364 (41%), Gaps = 32/364 (8%) Query: 11 EQQLAEKVDRLRQMMLAFQVPNLQIFRS----EPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66 E Q K L + + Q F+ + YR R +W + M +Q Sbjct: 98 EMQRKAKESALFKRLSKLQS-EPISFQPMICGDAWAYRRRVRLSLWFNPSTKQIDMGFRQ 156 Query: 67 --TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 T + + + IN L+ ++ A + + +L I+ + + + A++ L Y Sbjct: 157 KNTNDLIPVQSCEVAEPAINYLLPKLTALLEKFSAPK-QLGHIELVAADNGVAML-LRYT 214 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + L + R ++ A + ++ L +++K +++ Y D + Sbjct: 215 KNLAEIDRTLLLKF-----AEQEKLMLFLQSDKG---IEQIYGDAPYYQFSDGIKLHFDI 266 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 F Q N+ +N M+ L + Q D +L+L+CG GNF+L LA+ + +E Sbjct: 267 RDFIQVNSALNEPMVNTALDWLELSQQDCVLDLFCGMGNFTLPLAKRVKSAVGIEGVFEM 326 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 V+ A N N + N++ + Q+ + N+ F I +DPPRSG Sbjct: 327 VQKAAQNAERNQIKNIEFFQAD---LDQSFVEQPWANQ---------SFNKILLDPPRSG 374 Query: 304 LDDATVGMVQAY-PHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVL 361 A + + ILY+SCNP +L RD IL + IE+ A+ D FP+T H+E L Sbjct: 375 AAFALNALCELKAEKILYVSCNPATLVRDAEILCDFGYKIEKSAVIDMFPHTGHLESITL 434 Query: 362 LVRK 365 K Sbjct: 435 FTTK 438 >gi|257126314|ref|YP_003164428.1| RNA methyltransferase, TrmA family [Leptotrichia buccalis C-1013-b] gi|257050253|gb|ACV39437.1| RNA methyltransferase, TrmA family [Leptotrichia buccalis C-1013-b] Length = 474 Score = 214 bits (546), Expect = 1e-53, Method: Composition-based stats. Identities = 66/402 (16%), Positives = 157/402 (39%), Gaps = 58/402 (14%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL-------QIFRSEPIHYRMRAEFHIWHD 54 + +YE+QL K L +++ +L I + I+YR + + Sbjct: 87 GCDFGMLKYEKQLEYKDKMLEEVLTKIAEIDLKKVKISKIIGSDKKINYRNKTAEPFFKK 146 Query: 55 GDDLYHIMFDQQTKERMRIDYFM----PGSLLINALMIEMMATIRLEPLLR--------A 102 + + +++ + ++I+ + ++ + + + Sbjct: 147 NGIIQTGFYSRKSHNVFSAKESLLKSEIAKIIIDKFLQKVNSFAGTKKEFKVFNEVNNTG 206 Query: 103 KLFQIDYLTSQSDQAIVTLIYHRL---------LDDAWRECAIRLRDALHARKYQIQLIG 153 L QI ++ D+ ++ ++ ++ L++ + E ++ + K + + Sbjct: 207 FLKQIMIRNNEKDEVMIVVVVNKNSQYNQLSKVLEEMYDENDC-IKSIYISVKTEQNNVI 265 Query: 154 RANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD- 212 K Y++E + L ++ NSF Q N + + + + + Sbjct: 266 LG-KNVHLFGSQYLEEEM----EGLKFKIYPNSFFQINKKQALKLYDAAINFLNEENKNI 320 Query: 213 -------LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265 +++ + G G +++L+++ +V+ +E + S AA+ N + NV+ V Sbjct: 321 DKIYEKTVIDAFSGTGTIAMMLSKNIKKVIGIESIESSTLAAKLTSYENSIQNVEFVNGK 380 Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISC 323 ++ + + + I DPPR G++++ + V I+YISC Sbjct: 381 VEKELPKILKREDVG-------------AIVFDPPRRGIEESALKSVVKNKIEKIVYISC 427 Query: 324 NPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364 NP + RD+ IL+ + + ++A D FP T H+E ++ R Sbjct: 428 NPATFARDVKILAENGYVLRKVAPVDMFPQTGHIEVVGMIQR 469 >gi|83747940|ref|ZP_00944971.1| 23S rRNA m(5)U 1939 methyltransferase [Ralstonia solanacearum UW551] gi|83725358|gb|EAP72505.1| 23S rRNA m(5)U 1939 methyltransferase [Ralstonia solanacearum UW551] Length = 502 Score = 214 bits (546), Expect = 1e-53, Method: Composition-based stats. Identities = 78/385 (20%), Positives = 137/385 (35%), Gaps = 40/385 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWH--DG 55 ++ QLA K L + + YR RA + H Sbjct: 135 GCSMQHLDSRAQLAIKQRVLEDDLWHLAKLRPDVVFRPIAGPDWGYRYRARLTVRHVAAK 194 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115 + ++++ + ++AL++ + + ++ ++ Q++ Q Sbjct: 195 GGVLVGFHERKSSYVADMTSCEVLPPHVSALLVPLRELVGRLSIV-QRMPQVEVAVGQDV 253 Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDAL--HARKYQIQLIGRANKTKICLDRDYVDERLTV 173 A+V R+L+ LR HA ++ +Q G + L Sbjct: 254 TALVL----RILEPLTPADEAELRAFADRHAVQFWLQPKGPDTVYPFYPLDRALTYTLPE 309 Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFD 232 G T+ ++ FTQ N IN ++ VL GD LL+L+CG GNF+L +A Sbjct: 310 FGITMPFK--PTDFTQVNHQINRVLMSRVLKLLDARPGDRLLDLFCGIGNFTLPMATRGR 367 Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292 V+ +E ++ A N N + + F D RF Sbjct: 368 EVMGIEGSETLTTRALANAQHNGL-----------DAKTTFACRNLFEVSADDIAALGRF 416 Query: 293 KTIFVDPPRSGLDDATVGMVQ-----------AYPHILYISCNPDSLCRDLSIL--STTH 339 VDPPR G + + + I+Y+SCNP +L RD +L + Sbjct: 417 DRWLVDPPREGALAVSKALAELSQRGGEAAALLPGRIVYVSCNPATLARDAGLLVHEAGY 476 Query: 340 TIERLALFDQFPYTRHMECGVLLVR 364 + + + FP+T H+E + R Sbjct: 477 RLSGAGVVNMFPHTSHVESIAVFDR 501 >gi|269839722|ref|YP_003324414.1| RNA methyltransferase, TrmA family [Thermobaculum terrenum ATCC BAA-798] gi|269791452|gb|ACZ43592.1| RNA methyltransferase, TrmA family [Thermobaculum terrenum ATCC BAA-798] Length = 397 Score = 214 bits (546), Expect = 1e-53, Method: Composition-based stats. Identities = 81/363 (22%), Positives = 138/363 (38%), Gaps = 67/363 (18%) Query: 10 YEQQLAEKVDRLRQMMLA---FQVPNLQ--IFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64 YE QL K + + F+ P + + +P YR A F I +G Y Sbjct: 91 YEHQLELKRKLVIDQLAKRGGFESPPVTATLPSPQPYGYRNHARFSIDEEGRLGYVSRPG 150 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 + M+I+ + IN + L + +A Sbjct: 151 SG-RRFMQIERCLILHPWIN-----------------------EALRTFQGKAA------ 180 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 +++R +H +Y + A + I + + E L +R + Sbjct: 181 -------GHHQVQVRYGVHTGEYLVFPDLNAVEPSIPSGQRFYHEELL----GHRFRISD 229 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 +SF Q N M + V+ + +++ + Y G G F+++LA RV+A+E + + Sbjct: 230 SSFFQTNTLQAERMAQLVIERCQLRGEEVVVDAYAGVGTFAVLLAPRARRVIAIEESAAA 289 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 V A NI V N++ VR ++E M + + + +DPPR G Sbjct: 290 VADAMVNIE--GVPNIEYVRGKTEEVLGEMAE---------------QPEVLILDPPRVG 332 Query: 304 LDDATVGMV--QAYPHILYISCNPDSLCRDLSILS-TTHTIERLALFDQFPYTRHMECGV 360 + V A ++Y+SC+P SL RDL L + + + D FP T H+EC Sbjct: 333 CHPKALQAVVSLAPARVVYVSCDPGSLARDLRKLCDGGYQLVEVTPVDMFPQTHHIECVA 392 Query: 361 LLV 363 LV Sbjct: 393 TLV 395 >gi|207743450|ref|YP_002259842.1| rna methyltransferase protein [Ralstonia solanacearum IPO1609] gi|206594847|emb|CAQ61774.1| rna methyltransferase protein [Ralstonia solanacearum IPO1609] Length = 448 Score = 214 bits (546), Expect = 1e-53, Method: Composition-based stats. Identities = 78/385 (20%), Positives = 137/385 (35%), Gaps = 40/385 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWH--DG 55 ++ QLA K L + + YR RA + H Sbjct: 81 GCSMQHLDSRAQLAIKQRVLEDDLWHLAKLRPDVVFRPIAGPDWGYRYRARLTVRHVAAK 140 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115 + ++++ + ++AL++ + + ++ ++ Q++ Q Sbjct: 141 GGVLVGFHERKSSYVADMTSCEVLPPHVSALLVPLRELVGRLSIV-QRMPQVEVAVGQDV 199 Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDAL--HARKYQIQLIGRANKTKICLDRDYVDERLTV 173 A+V R+L+ LR HA ++ +Q G + L Sbjct: 200 TALVL----RILEPLTPADEAELRAFADRHAVQFWLQPKGPDTVYPFYPLDRALTYTLPE 255 Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFD 232 G T+ ++ FTQ N IN ++ VL GD LL+L+CG GNF+L +A Sbjct: 256 FGITMPFK--PTDFTQVNHQINRVLMSRVLKLLDARPGDRLLDLFCGIGNFTLPMATRGR 313 Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292 V+ +E ++ A N N + + F D RF Sbjct: 314 EVMGIEGSETLTTRALANAQHNGL-----------DAKTTFACRNLFEVSADDIAALGRF 362 Query: 293 KTIFVDPPRSGLDDATVGMVQ-----------AYPHILYISCNPDSLCRDLSIL--STTH 339 VDPPR G + + + I+Y+SCNP +L RD +L + Sbjct: 363 DRWLVDPPREGALAVSKALAELSQRGGEAAALLPGRIVYVSCNPATLARDAGLLVHEAGY 422 Query: 340 TIERLALFDQFPYTRHMECGVLLVR 364 + + + FP+T H+E + R Sbjct: 423 RLSGAGVVNMFPHTSHVESIAVFDR 447 >gi|262377436|ref|ZP_06070659.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Acinetobacter lwoffii SH145] gi|262307666|gb|EEY88806.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Acinetobacter lwoffii SH145] Length = 462 Score = 214 bits (546), Expect = 1e-53, Method: Composition-based stats. Identities = 89/375 (23%), Positives = 151/375 (40%), Gaps = 42/375 (11%) Query: 11 EQQLAEKVDRLRQMMLAFQV----PNLQIFRSEPIHYRMRAEFHIWH--DGDDLYHIMFD 64 + Q+ K + L+ + F L RS+ YR +A + + D L + Sbjct: 107 DAQIELKQNVLKSHLQHFAGIQPDQWLPPLRSQREDYRRKARIGVRYLPSKDQLVVGFRE 166 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLL-----RAKLFQIDYLTSQSDQAIV 119 Q+ + ID M L E + L+ LL +A + I+ D A++ Sbjct: 167 NQSNKLTSIDRCMI-------LDREFGSVTGLKQLLQGLNGKADIGHIELAMGDQDIALL 219 Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTL- 178 +L D +LR+ + +Q+ L +T +D RL Sbjct: 220 VRETAKLSAD----DVNQLREFTLQKGWQLYLQPAGKETLSRIDDPEASARLHYGLDDFD 275 Query: 179 -IYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFD---R 233 + FTQ N+ IN M+ + QG+ +L+L+CG GNFSL LAR + Sbjct: 276 VKFGFNPLDFTQVNSSINPQMVRLACDLLQLQQGERVLDLFCGLGNFSLPLARCVGASGQ 335 Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293 V+AVE + V N N + + S++ T+ N+ F Sbjct: 336 VIAVEGSDEMVRRGAENAKNNGIAQISFY---SQDLTKDFSHHTWANQ---------GFD 383 Query: 294 TIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFP 351 + +DPPR+G ++ + Q I+Y+SCNP +L RD +L + + + + D F Sbjct: 384 ALLIDPPRAGAEEVMHYIPQFGAKRIVYVSCNPATLARDAGLLVQQGYRLTQAGVMDMFT 443 Query: 352 YTRHMECGVLLVRKP 366 +T H+E L ++ Sbjct: 444 HTGHVESIALFEKEN 458 >gi|291525750|emb|CBK91337.1| 23S rRNA m(5)U-1939 methyltransferase [Eubacterium rectale DSM 17629] Length = 471 Score = 214 bits (546), Expect = 1e-53, Method: Composition-based stats. Identities = 80/404 (19%), Positives = 145/404 (35%), Gaps = 61/404 (15%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIF--------RSEPIHYRMRAEFHIW- 52 T YE+QL K+ ++++++ + + YR + EF Sbjct: 80 GCTYQTVPYEKQLDMKLTQVKKLISDAIGTEEESGYEFIGIHGSPKKSEYRNKMEFSFGD 139 Query: 53 -HDGDDLYHIMFDQQTK-ERMRIDYFMPGSLLINALMIEMMATIRLE-----------PL 99 + L M + + + + + ++ + Sbjct: 140 EYKDGPLALGMHKRGSFYDLVTVSDCQIVDEDFRTILKATLDYFSKNNIPYFHRATHKGY 199 Query: 100 LRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAW-----------RECAIRLRDALHARKYQ 148 LR L + T + +VT ++ R + LH + Sbjct: 200 LRHLLVRKATKTGEIIVDLVTTTQTEGFNEEELLAGFRYALLTRHYDGIFKGVLHTKNDS 259 Query: 149 IQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKG 208 + + + T++ Y E L L ++ SF Q N+ + E G Sbjct: 260 VADVVKNEGTEVLYGDSYFYEELL----GLKFKITPFSFFQTNSLGAEVLYETAREFILG 315 Query: 209 IQGD------LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262 D + +LY G G + ++A V+ VEI + +V AA+ N A N ++N K + Sbjct: 316 DDKDSLNGKTVYDLYSGTGTIAQLMAPVCKEVVGVEIVEEAVCAAKENAALNGLDNCKFI 375 Query: 263 RMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILY 320 LK +D + I +DPPR G+ +G + Y +++Y Sbjct: 376 AGDV---------------LKVLDEIEEKPDYIILDPPRDGIHPKAIGKIIEYGVENMVY 420 Query: 321 ISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLV 363 ISC P SL RDL I + +E++ D FP T H+EC +++ Sbjct: 421 ISCKPTSLARDLQIFMDRGYRVEKICCVDMFPNTYHVECVIMMQ 464 >gi|325479240|gb|EGC82336.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA [Anaerococcus prevotii ACS-065-V-Col13] Length = 455 Score = 214 bits (546), Expect = 1e-53, Method: Composition-based stats. Identities = 80/386 (20%), Positives = 146/386 (37%), Gaps = 50/386 (12%) Query: 10 YEQQLAEKVDRLRQMMLA---FQVPNLQIFRSEPIH-YRMRAEFHIWHDGDDLYHIMFDQ 65 YE +L KVD +++M +++I +S YR + E+ ++ Sbjct: 89 YETELMLKVDMIKKMFEENDISYQGDIKINQSPKTRAYRNKMEYTFGDREKGGELVLGLH 148 Query: 66 QTKERMRIDYFMPGSLLINALMI--------------EMMATIRLEPLLRAKLFQIDYLT 111 + I +++ N I E E LLR + + + T Sbjct: 149 RQNRFYEIVSTKDCNIVDNDFNIIRSNVEEYFRDKKTEFYHKTTNEGLLRHLIVRKAHRT 208 Query: 112 SQSDQAIVTLIYHRLLDDAWRECAIRLRDA---------LHARKYQIQLIGRANKTKICL 162 S+ +VT D +L D+ H + K + Sbjct: 209 SELMVILVTTSDTSFDDIRKNLFLNKLLDSKVEGKIVSVFHVINDSVADAVIPQKINLLY 268 Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNG 221 +D++ E + L ++ SF QPN + + A Q D+L+LY G G Sbjct: 269 GKDHIVEEML----GLNFKISPFSFFQPNIYTAEKLYQKAFDLAKIDGQMDILDLYSGTG 324 Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281 + V+A +EI + +V+ A N N + N+ + Sbjct: 325 TITQVMATQAKSATGIEIVREAVDKAWENSKLNDIKNIDFLCGDV--------------- 369 Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSIL-STT 338 L++I+ ++ + +DPPR+G+ ++ + +YISCNP + ++ S+ Sbjct: 370 LEEIEKVGNKYDVVILDPPRAGISSNSLEKILKIDTKKFIYISCNPKTQVENIKEFTSSG 429 Query: 339 HTIERLALFDQFPYTRHMECGVLLVR 364 + I+ LFDQFP +RH+E LL + Sbjct: 430 YKIKDYELFDQFPRSRHLEAIALLEK 455 >gi|121594754|ref|YP_986650.1| 23S rRNA 5-methyluridine methyltransferase [Acidovorax sp. JS42] gi|143580440|sp|A1W8J9|RUMA_ACISJ RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|120606834|gb|ABM42574.1| 23S rRNA m(5)U-1939 methyltransferase [Acidovorax sp. JS42] Length = 482 Score = 214 bits (546), Expect = 1e-53, Method: Composition-based stats. Identities = 74/394 (18%), Positives = 135/394 (34%), Gaps = 40/394 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIF----RSEPIHYRMRAEFHIWH--DG 55 + Q+A K L + + YR RA + + Sbjct: 97 GCKMQHLHVAAQVAVKQRVLEDNLWHLGKVKAETILRPIEGPAWGYRYRARLSVRYVPKK 156 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115 D + +++++ ++ ++A+++ + A I R QI+ + Sbjct: 157 DKVLVGFHERKSRYIADMETCKILPPHVDAMLMPLRALIGSMAA-RDTCPQIELACGDTV 215 Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175 A+V R L+ E +LR Q L + +T LD + Sbjct: 216 TALVL----RHLEPLSPEDKDKLRAFAAVHGVQWWLQPKGPETVHLLDEGGEPLAYGLPD 271 Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRV 234 + FTQ N IN ++ L + + +++ +CG GNF+L +A V Sbjct: 272 FGITMPFKPTDFTQVNPHINRVLVTRALRLLDARKDERVIDWFCGLGNFTLPIATQAREV 331 Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294 L +E ++ V +R N +N +++ F F ++ I Sbjct: 332 LGIEGSEALVARSRENYQSNQAQRQDGSALAATSFV----ARNLFEMTPEMLIADGASDK 387 Query: 295 IFVDPPRSGLDDATVGMV----------------------QAYPHILYISCNPDSLCRDL 332 VDPPR G + + Q I+Y+SCNP +L RD Sbjct: 388 WLVDPPREGAFALSKALADIHQARIGAEDAPPLPAGHEGWQPPRRIVYVSCNPATLARDA 447 Query: 333 SIL--STTHTIERLALFDQFPYTRHMECGVLLVR 364 +L + + + FP+T H+E + R Sbjct: 448 GLLVHQAGYRCVAAGVVNMFPHTAHVESMAVFER 481 >gi|146293860|ref|YP_001184284.1| 23S rRNA 5-methyluridine methyltransferase [Shewanella putrefaciens CN-32] gi|226725391|sp|A4Y952|RUMA_SHEPC RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|145565550|gb|ABP76485.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Shewanella putrefaciens CN-32] Length = 450 Score = 214 bits (546), Expect = 1e-53, Method: Composition-based stats. Identities = 81/377 (21%), Positives = 139/377 (36%), Gaps = 35/377 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN----LQIFRSEPIHYRMRAEFHIWHDGDD 57 L Q K L +M F E HYR RA D + Sbjct: 91 GCDLQHMSLSGQREHKEAALLDIMAKFAGTEGGALSPALTGEGWHYRRRARLATLFDKNT 150 Query: 58 LYH--IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115 + + + I + ++ L++ A + + +A L ++ + + + Sbjct: 151 KHLSLGFRAASSSNVVPISQCQVLAKPLSDLIVP-FAKLLNQLSAKASLGHLELIAADNG 209 Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANK------TKICLDRDYVDE 169 V I L D + +L + I L + + +DE Sbjct: 210 HFAVLRITKALND----KDLAKLSAFAEQHQIYICLQDNEGQFQGVGVELVLPVYQLLDE 265 Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLA 228 +L + +F Q N+ IN M+ + + +L+L+CG GNFSL LA Sbjct: 266 NAQSDAVSLSF--TPGNFVQVNSQINKAMVAQAMDWLAPAPDERILDLFCGMGNFSLPLA 323 Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288 + V+ VE V AR N AN+++ + + + E ++ Sbjct: 324 KMGADVIGVEGVAEMVSQARVNAKANNLDKLTFYHGD---LSADLSLEPWMGKI------ 374 Query: 289 SYRFKTIFVDPPRSGLDDATVGMVQAYPH-ILYISCNPDSLCRD-LSILSTTHTIERLAL 346 + +DP R+G ++ + + P +LY+SCNP SL RD +L + ++RL L Sbjct: 375 ----DKLLLDPARAGAFESLQWLKKMKPRKVLYVSCNPASLARDSTVLLERGYRLQRLGL 430 Query: 347 FDQFPYTRHMECGVLLV 363 D FP T H+E L Sbjct: 431 IDMFPQTHHIEAMALFE 447 >gi|299067260|emb|CBJ38457.1| 23S rRNA (Uracil-5-)-methyltransferase rumA (23S rRNA(M-5-U1939)-methyltransferase) [Ralstonia solanacearum CMR15] Length = 482 Score = 214 bits (546), Expect = 1e-53, Method: Composition-based stats. Identities = 79/386 (20%), Positives = 135/386 (34%), Gaps = 42/386 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWH--DG 55 ++ QLA K + + + YR RA + H Sbjct: 115 GCSMQHLDSRAQLAIKQRVMEDDLWHLAKLRPDVVFRPIAGPDWGYRYRARLTVRHVAAK 174 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115 + ++++ + + ++AL++ + + + ++ QI+ + Sbjct: 175 GGVLVGFHERKSSYVVDMTSCEVLPPHVSALLVPLRELVGRLSIF-QRMPQIEVAVGEDV 233 Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC---LDRDYVDERLT 172 A+V R+L+ LR Q L + T LDR + L Sbjct: 234 TALVL----RILEPLTSADEAELRTFADQHAVQFWLQPKGPDTVYPFYPLDR-ALTYTLP 288 Query: 173 VAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHF 231 G T+ ++ FTQ N IN ++ L GD LL+L+CG GNF+L +A Sbjct: 289 EFGITMPFK--PTDFTQVNHQINRVLMSRALKLLDARPGDRLLDLFCGIGNFTLPMATRG 346 Query: 232 DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291 V+ +E ++ A N N + + F D R Sbjct: 347 CEVMGIEGSETLTTRALANAQHNGL-----------DAKVTFACRNLFEVSADDIAALGR 395 Query: 292 FKTIFVDPPRSGL---DDATVGM--------VQAYPHILYISCNPDSLCRDLSIL--STT 338 F VDPPR G A + I+Y+SCNP +L RD +L Sbjct: 396 FDRWLVDPPREGALAVSKAVAELSQRGGEAAALLPGRIVYVSCNPATLARDAGLLVHEAG 455 Query: 339 HTIERLALFDQFPYTRHMECGVLLVR 364 + + + + FP+T H+E + R Sbjct: 456 YRLAGAGVVNMFPHTSHVESIAVFER 481 >gi|134302402|ref|YP_001122372.1| 23S rRNA 5-methyluridine methyltransferase [Francisella tularensis subsp. tularensis WY96-3418] gi|134050179|gb|ABO47250.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Francisella tularensis subsp. tularensis WY96-3418] Length = 449 Score = 214 bits (546), Expect = 1e-53, Method: Composition-based stats. Identities = 75/380 (19%), Positives = 152/380 (40%), Gaps = 35/380 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQV---PN---LQIFRSEPIHYRMRAEFHIWH-- 53 +L + Q+ K L + P + S YR +A + + Sbjct: 87 GCSLQHMSTDAQIEHKQQTLINQLKYIGNGVEPENILPPLRTSNTEGYRNKARLGVRYVS 146 Query: 54 DGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQ 113 + ++ + ID + + L+ + E+ + I + + + Q++ Sbjct: 147 KKGKILVGFRERNGRFLADIDKCIVLNPLVGDKITEISSFIETLSIYQH-IAQLEIAIDD 205 Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKT--KICLDRDYVDERL 171 + A++ R L+ E +LR Y I L + T ++ D ++L Sbjct: 206 TRPAMIV----RHLEPFTNEDLEKLRSFAQENNYWIYLQSKGPDTIFRLYPQGDVEPKKL 261 Query: 172 TVAGRTLI---YRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVL 227 + I + N FTQ N IN M++ + + D +++L+CG GNF+L + Sbjct: 262 SYQPAAGIDIGFE--PNDFTQVNNDINKKMIKRAIELLDISENDSIIDLFCGLGNFTLPI 319 Query: 228 ARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDI 287 ++H V+ VE V+ A+ N++ NV + ++ + FN Sbjct: 320 SQHAKTVIGVEGELTMVKRAKETADNNNITNVNFY---AANLFESFEDKEWFN------- 369 Query: 288 HSYRFKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSIL--STTHTIERL 344 ++ + + +DPPR+G + + + I+Y+SC+ +L RD IL + + + Sbjct: 370 -NFEYNKMLLDPPRAGAQEVCNNIEKFNVKRIVYVSCDTAALARDAGILVNTKGYKLISA 428 Query: 345 ALFDQFPYTRHMECGVLLVR 364 + D FP+T H+E + + Sbjct: 429 GVMDMFPHTMHVESIAVFEK 448 >gi|270284909|ref|ZP_06194303.1| rRNA methyltransferase [Chlamydia muridarum Nigg] gi|270288937|ref|ZP_06195239.1| rRNA methyltransferase [Chlamydia muridarum Weiss] gi|14195332|sp|P58106|Y118_CHLMU RecName: Full=Uncharacterized RNA methyltransferase TC_0118 Length = 397 Score = 214 bits (546), Expect = 1e-53, Method: Composition-based stats. Identities = 85/399 (21%), Positives = 161/399 (40%), Gaps = 56/399 (14%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFR----SEPIHYRMRAEFHIWH--DG 55 + +YE L K L + +P+ +I S + R + EF + DG Sbjct: 16 GCSSPQTEYELSLKAKELALHNLFSPL-IPSQKILPVIPCSPILRGRNKMEFSFYQTVDG 74 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGSL----LIN------ALMIEMMATIR--LEPLLRAK 103 + + + K+ + I + ++N A E+ A + L Sbjct: 75 EKTLGFISPSKPKKGIPITECLMIDERAIDILNYTRSWWATHPELSAYYPPLNKGSLCTL 134 Query: 104 LFQIDYLTSQSD--------------QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQI 149 +I +++ +++ LLD +I + L AR Sbjct: 135 TVRIGNVSNDFMIILTTSGREEFAVPLSVIQEWQKTLLDSGLPITSIFWEEKLSARNSPT 194 Query: 150 QLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGI 209 +T ++ ++L++ GR+ I+ SF QP + +++ + Sbjct: 195 TF-----RTTHLYGEQFLKQQLSIEGRSNIFHVRPRSFFQPQSRQAEKIIQTIKDFISPT 249 Query: 210 -QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268 + LL+LYCG G + L+ + +++ VE+ +V +A+ NI N N+++ +K+ Sbjct: 250 GEETLLDLYCGAGTIGISLSPYVKKIIGVELVPDAVASAQENIQLNSA-NMEVFLEDAKQ 308 Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPD 326 F R L +DI + +DPPR G+ + + + I+Y+SCNP Sbjct: 309 FC------RRHEHLPPLDI-------VVIDPPRCGMQNKALKYLLRMSPKKIIYVSCNPL 355 Query: 327 SLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364 + + SIL + ++R+ DQFP+T H+E VLL R Sbjct: 356 TQISECSILVEHGYQLQRMQPIDQFPHTHHLENVVLLER 394 >gi|33240415|ref|NP_875357.1| SAM-dependent methyltransferase related to tRNA (uracil-5-)-methyltransferase [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|50401517|sp|Q7VBX7|Y965_PROMA RecName: Full=Uncharacterized RNA methyltransferase Pro_0965 gi|33237942|gb|AAQ00010.1| SAM-dependent methyltransferase related to tRNA (uracil-5-)-methyltransferase [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 419 Score = 214 bits (546), Expect = 1e-53, Method: Composition-based stats. Identities = 77/393 (19%), Positives = 149/393 (37%), Gaps = 51/393 (12%) Query: 2 SGTLLID---QYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWH 53 G + + Y Q A K L + + I S+ HYR ++ F +++ Sbjct: 45 GGCSMQEIEPHY--QFAIKKKLLINALSRIGKLNDFPEPISITPSQFFHYRNKSTFPVYN 102 Query: 54 DG-DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLL-------RAKLF 105 + + + + + + + ID IN + ++ ++ + + L Sbjct: 103 ESYGNTIIGYYQRNSHKIVDIDNCPVLDHKINKALSDIRLILKDNHINADHDIRRKGGLR 162 Query: 106 QIDYLTS-QSDQAIVTLI----YHRLLDDAWRECA---IRLRDALHARKYQIQLIGRANK 157 I + +++ ++T + +LL + + L+ + + Sbjct: 163 HISIRSGINTNEVLITFVSNFSIKKLLFPITNKLNGSESNVVGILNNIQPKPNNKIFGAT 222 Query: 158 TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG--DLLE 215 T+I RDY+ ++ SF Q N + + +++ Sbjct: 223 TEILTGRDYIYDKFCHMDI----LIGSTSFFQVNLVEAEKAINCIRNIISNTNKIVRIID 278 Query: 216 LYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275 Y G G S+ LA RV+ +EI + E A N N++ + ++ + Sbjct: 279 AYSGIGTMSIPLASDGYRVIGIEINNEAHEIAIRNAEINNIKTITFENQDVTKYLPKILL 338 Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYP-HILYISCNPDSLCRDLS 333 +F + +DPPR GLD + + ++ + P HI Y+SCNP +L RDLS Sbjct: 339 PNDF---------------LILDPPRKGLDPSLIDVITKLMPIHICYLSCNPATLARDLS 383 Query: 334 IL--STTHTIERLALFDQFPYTRHMECGVLLVR 364 ++ ++I + FD FP T H+E V L R Sbjct: 384 LILREHKYSIISITAFDFFPQTTHLETLVYLKR 416 >gi|237747678|ref|ZP_04578158.1| 23S rRNA 5-methyluridine methyltransferase [Oxalobacter formigenes OXCC13] gi|229379040|gb|EEO29131.1| 23S rRNA 5-methyluridine methyltransferase [Oxalobacter formigenes OXCC13] Length = 464 Score = 214 bits (546), Expect = 1e-53, Method: Composition-based stats. Identities = 71/381 (18%), Positives = 140/381 (36%), Gaps = 33/381 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWH--DG 55 ++ + Q+A K L + + YR RA + + Sbjct: 95 GCSMQHVEPSAQVAMKQRVLEDNLWHIGRVRPERMLRPIYGPYWGYRFRARLSVNYVPKK 154 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115 + ++Q++ + + I+ +++ + I ++R ++ QI+ Sbjct: 155 GGILVGFRERQSRYVVDMKECHVLPRHISDMLVPLRQLIESLSIMR-EVPQIEVAIGSDG 213 Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL--DRDYVDERLTV 173 ++T + R++ + +L+ K Q L + T +++ + L Sbjct: 214 DQLITALLLRIMAPLTADDESKLKRFADEYKVQWWLQTKGPDTIALFYPEKNALKYVLPE 273 Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFD 232 + ++ N FTQ N IN ++ L G + +L+CG GNFSL +AR Sbjct: 274 FSVEMPFK--PNDFTQVNHHINQVLVSRALRLLDIGEDERIADLFCGLGNFSLPIARQAK 331 Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292 V+ +E + + A N N + + S F + + +F Sbjct: 332 EVVGIEGSDILTQRAEENAVLNGLEDKTKFACS-----------NLFEMTAENWVALGKF 380 Query: 293 KTIFVDPPRSGLDDATVGMVQ--------AYPHILYISCNPDSLCRDLSIL--STTHTIE 342 I +DPPR G + I+Y+SCNP +L RD IL + ++ Sbjct: 381 DRILIDPPRDGAAAVCQAIANLDEKHAQFKPKRIVYVSCNPSTLARDAGILVTEGGYKLD 440 Query: 343 RLALFDQFPYTRHMECGVLLV 363 + + FP+T H+E + Sbjct: 441 MAGVINMFPHTSHVESMAVFE 461 >gi|237745481|ref|ZP_04575961.1| 23S rRNA 5-methyluridine methyltransferase [Oxalobacter formigenes HOxBLS] gi|229376832|gb|EEO26923.1| 23S rRNA 5-methyluridine methyltransferase [Oxalobacter formigenes HOxBLS] Length = 451 Score = 214 bits (546), Expect = 2e-53, Method: Composition-based stats. Identities = 74/382 (19%), Positives = 137/382 (35%), Gaps = 33/382 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHI--WHDG 55 ++ Q+A K L + + YR RA + Sbjct: 82 GCSMQHLDPAAQVAIKQRVLEDNLRHIGKVKAERMLRPIYGPYWGYRFRARLSVNDVPKK 141 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115 + ++Q++ + I+ +++ + I +R ++ QI+ Sbjct: 142 GGILVGFREKQSRYVADMTQCSVMPRHISEMLVPLRELIGSL-SIRQQVPQIEVAIGNDR 200 Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD--RDYVDERLTV 173 +VT + R++ +E RL+ Q L + T + + RL Sbjct: 201 DGLVTALLLRIMAPLTKEDENRLKRFADDHDIQWWLQSKGPDTITLFYPAGNKLKYRLPE 260 Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFD 232 + ++ FTQ N IN ++ + + + D + +L+CG GNFSL +ARH Sbjct: 261 FNVEMPFK--PGDFTQVNHHINPVLVSRAIRLLEIEKNDRIADLFCGLGNFSLPIARHAA 318 Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292 V+ +E ++ E A+ + N + E F I F Sbjct: 319 EVVGIEGSEILTERAKESALLNGL-----------EEKTRFETRNLFEMTVKDWIGLGPF 367 Query: 293 KTIFVDPPRSGLDDATVGMVQAYP--------HILYISCNPDSLCRDLSIL--STTHTIE 342 + +DPPR G + + I+Y+SCNP +L RD IL + + Sbjct: 368 DKVLIDPPRDGAAAVCQSIAELGKHQEALRPRRIVYVSCNPSTLARDAGILVTEGGYRLH 427 Query: 343 RLALFDQFPYTRHMECGVLLVR 364 + + FP+T H+E + R Sbjct: 428 LAGVVNMFPHTSHVESMAVFER 449 >gi|300704420|ref|YP_003746023.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Ralstonia solanacearum CFBP2957] gi|299072084|emb|CBJ43416.1| 23S rRNA (Uracil-5-)-methyltransferase rumA (23S rRNA(M-5-U1939)-methyltransferase) [Ralstonia solanacearum CFBP2957] Length = 448 Score = 214 bits (546), Expect = 2e-53, Method: Composition-based stats. Identities = 78/385 (20%), Positives = 137/385 (35%), Gaps = 40/385 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWH--DG 55 ++ QLA K L + + YR RA + H Sbjct: 81 GCSMQHLDSRAQLAIKQRVLEDDLWHLAKLRPDVVFRPIAGPDWGYRYRARLTVRHVAAK 140 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115 + ++++ + ++AL++ + + ++ ++ Q++ Q Sbjct: 141 GGVLVGFHERKSSYVADMTSCEVLPPHVSALLVPLRELVGRLSIV-QRMPQVEVAVGQDV 199 Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDAL--HARKYQIQLIGRANKTKICLDRDYVDERLTV 173 A+V R+L+ LR HA ++ +Q G + L Sbjct: 200 TALVL----RILEPLTPADEAELRAFADRHAVQFWLQPKGPDTVYPFYPLDRALTYTLPE 255 Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFD 232 G T+ ++ FTQ N IN ++ VL GD LL+L+CG GNF+L +A Sbjct: 256 FGITMPFK--PTDFTQVNHQINRVLMSRVLKLLDARPGDRLLDLFCGIGNFTLPMATRGR 313 Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292 V+ +E ++ A N N + + F D RF Sbjct: 314 EVMGIEGSEALTTRALANAQHNGL-----------DAKTTFACRNLFEVSADDIAALGRF 362 Query: 293 KTIFVDPPRSGLDDATVGMVQ-----------AYPHILYISCNPDSLCRDLSIL--STTH 339 VDPPR G + + + I+Y+SCNP +L RD +L + Sbjct: 363 DRWLVDPPREGALAVSKALAELSQSGSEAAALLPGRIVYVSCNPATLARDAGLLVHEAGY 422 Query: 340 TIERLALFDQFPYTRHMECGVLLVR 364 + + + FP+T H+E + R Sbjct: 423 RLSGAGVVNMFPHTSHVESIAVFDR 447 >gi|119475990|ref|ZP_01616342.1| hypothetical protein GP2143_05355 [marine gamma proteobacterium HTCC2143] gi|119450617|gb|EAW31851.1| hypothetical protein GP2143_05355 [marine gamma proteobacterium HTCC2143] Length = 458 Score = 214 bits (546), Expect = 2e-53, Method: Composition-based stats. Identities = 79/373 (21%), Positives = 139/373 (37%), Gaps = 31/373 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRS----EPIHYRMRAEFHIWHDGDD 57 L Y Q K DRL Q+ + + ++ +P YR RA F + Sbjct: 98 GCDLQHLDYPSQTQHKWDRLSQLFSPWLDNDDRLVMGSITGDPWSYRHRARFAVDASKHS 157 Query: 58 LYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQA 117 ++ + + I IN + + ++ R+ + ++ S Sbjct: 158 CNIGFRQARSHKVVDITRCSIVFDGINDALATVRRLVKSLK-NRSVINEVSITEDSSGNI 216 Query: 118 IVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD---YVDERLTVA 174 + + R L + + + I++ A T+ D + L Sbjct: 217 GIAIFCTRPLSAS---DIAAVSEHAITHDCHIEVRSSATATQCMFPEDRSVALSYTLDSY 273 Query: 175 GRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFSLVLARHFDR 233 + Y + FTQ N IN ++ + + + D++ + +CG GNFSL ++ R Sbjct: 274 DVVIPYTV--DDFTQVNPAINHRLVALTIKWLQLGEKDIVADFFCGIGNFSLPISTFVAR 331 Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293 + E V+ AR N NH++N + + D + F Sbjct: 332 TVGFEWVASMVDKARSNAVFNHIDNCEFKVIDLT---------------ADRLVIDEDFN 376 Query: 294 TIFVDPPRSGLDDATVGMVQAY-PHILYISCNPDSLCRDLSILSTT-HTIERLALFDQFP 351 +DPPR+G + + ++ I+YISCNP +L RD IL+ + + L+L D FP Sbjct: 377 KALLDPPRAGAEKICKQLAESKLERIVYISCNPRTLARDSKILTQGNYQLTELSLADMFP 436 Query: 352 YTRHMECGVLLVR 364 T H E L R Sbjct: 437 QTVHSEVVALFTR 449 >gi|220916705|ref|YP_002492009.1| (uracil-5)-methyltransferase [Anaeromyxobacter dehalogenans 2CP-1] gi|219954559|gb|ACL64943.1| (Uracil-5)-methyltransferase [Anaeromyxobacter dehalogenans 2CP-1] Length = 438 Score = 214 bits (545), Expect = 2e-53, Method: Composition-based stats. Identities = 88/374 (23%), Positives = 139/374 (37%), Gaps = 30/374 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-------VPNLQIFRSEPIHYRMRAEFHIWHD 54 L Y QLA K L + + + P+ YR RA+FH HD Sbjct: 84 GCEWLHVAYPAQLAAKERSLHEALRRIGKLEPGSYPARPIVPSPSPLRYRARAKFH--HD 141 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQS 114 + F +++ E +R+ S ++AL + + L + +++ + Sbjct: 142 RAAGRLVFFRRRSHEPVRLRECHLLSPGLDALREAVGPALAA-ARLSPREVALEWSDAAG 200 Query: 115 DQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDE--RLT 172 A L L + R L L+ +A + D V R Sbjct: 201 RGAAWLL-----LPEVTAPVRARAEALLRDVPSLQGLVLQAEGGQPVTAGDPVLRHARAP 255 Query: 173 VAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD 232 R + F Q N G N ++E L D+LEL+CG GNF+ L+ Sbjct: 256 GRPEAGTQRSRPDVFQQANRGANARLVETALELLAPAGEDVLELHCGAGNFTGPLSEQAR 315 Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292 V AVE+ P+++ AR A NV+ + +A RE + RF Sbjct: 316 SVSAVEVQGPALDLAR---ADLGGRNVRFFAGDALALARAFGRE--------AGPGARRF 364 Query: 293 KTIFVDPPRSGLDDATVGMV-QAYPHILYISCNPDSLCRDL-SILSTTHTIERLALFDQF 350 +DPPR G + P +Y+SC+P + RDL + + + + + D F Sbjct: 365 GAALLDPPREGARGIGPALRDLGVPRAVYVSCDPATFARDLRACVEAGYRVAAVVPVDMF 424 Query: 351 PYTRHMECGVLLVR 364 P T H+E LL R Sbjct: 425 PQTHHVEGVALLER 438 >gi|226954324|ref|ZP_03824788.1| 23S rRNA (uracil-5-)-methyltransferase(23S rRNA(M-5-U1939)-methyltransferase) [Acinetobacter sp. ATCC 27244] gi|226834902|gb|EEH67285.1| 23S rRNA (uracil-5-)-methyltransferase(23S rRNA(M-5-U1939)-methyltransferase) [Acinetobacter sp. ATCC 27244] Length = 463 Score = 214 bits (545), Expect = 2e-53, Method: Composition-based stats. Identities = 84/383 (21%), Positives = 153/383 (39%), Gaps = 33/383 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWHDGDD 57 +L ++Q+ K + L+ + F + RS I YR RA + + Sbjct: 98 GCSLQHIHPDEQILLKQNVLQSHLQHFAGLQPEQWLTPIRSSKIDYRRRARIGVRYIPRQ 157 Query: 58 LYHIMFDQQTK--ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115 +M ++ I ++ + E+ + +A + ++ + Sbjct: 158 DRLVMGFREHHSNHLTTIHQCKVLDQTLSDAIPELRKCLEGLMA-KAHIGHVELAMGDHE 216 Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175 A++ R L++ LR R++Q+ L R + +D RL Sbjct: 217 VALLI----RHLEELNVSDVNHLRQFALQRQWQLYLQPRGADSLHRVDDVQAPMRLHYHL 272 Query: 176 RTL--IYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFD 232 + FTQ N+ +N M++ + +G+ +L+L+CG GNFSL LAR Sbjct: 273 DDFDIRFAFSPLDFTQVNSAVNARMIQLACELLQLKEGERVLDLFCGLGNFSLPLARCVG 332 Query: 233 ---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHS 289 +V+ VE + V A N AN +N S++ T+ Sbjct: 333 DTGQVIGVEASDEMVLRATENAKANSLNQAIFF---SQDLTKDFS---------HHPWAK 380 Query: 290 YRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILST-THTIERLAL 346 F + +DPPRSG + + V ++ I+Y+SCNP +L RD +L+ + +++ A+ Sbjct: 381 QGFDALLIDPPRSGAFE-VMQYVPSFGANRIVYVSCNPSTLARDAGVLAQHGYQLKKAAV 439 Query: 347 FDQFPYTRHMECGVLLVRKPSGW 369 D F +T H+E L + S Sbjct: 440 MDMFTHTEHVESIALFEKNESDK 462 >gi|120611974|ref|YP_971652.1| 23S rRNA 5-methyluridine methyltransferase [Acidovorax citrulli AAC00-1] gi|143580423|sp|A1TSE0|RUMA_ACIAC RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|120590438|gb|ABM33878.1| 23S rRNA m(5)U-1939 methyltransferase [Acidovorax citrulli AAC00-1] Length = 491 Score = 214 bits (545), Expect = 2e-53, Method: Composition-based stats. Identities = 76/396 (19%), Positives = 135/396 (34%), Gaps = 44/396 (11%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWH--DG 55 + Q+A K L + + YR RA + H Sbjct: 106 GCKMQHLHVGAQVAVKQRVLEDNLWHLGKVKAETVLRPIEGPAWGYRYRARLAVRHVEKK 165 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115 + +++++ ++ ++A+++ + A I R QI+ Sbjct: 166 GKVLVGFHERKSRYIADMEVCPVLPPHVSAMLLPLRALIASMDA-RDTCPQIELACGDDV 224 Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL--DRDYVDERLTV 173 A+V R L+ RLR A Q L + T L ++ L Sbjct: 225 TALVL----RHLEPLSEADLGRLRSFAAAHGVQWWLQPKGPDTVHLLDEGGPQLNYALPD 280 Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFD 232 G T+ ++ FTQ N IN ++ L G +++ +CG GNF+L +A Sbjct: 281 FGITMPFK--PTDFTQVNPHINRVLVTRALRLLDAGRTDRVIDWFCGLGNFTLPIATQAR 338 Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292 V+ +E ++ V +R N N + + ++ F F ++ I Sbjct: 339 EVVGIEGSEALVARSRENYRKNQDDRPQGQALAPATFV----ARNLFEMTPEMLIADGVA 394 Query: 293 KTIFVDPPRSGLDDATVGMVQAY----------------------PHILYISCNPDSLCR 330 VDPPR G + + I+Y+SCNP +L R Sbjct: 395 DKWLVDPPREGAFALAKALADIHQARIGAEDAPALPASAEGWTPPQRIVYVSCNPATLAR 454 Query: 331 DLSIL--STTHTIERLALFDQFPYTRHMECGVLLVR 364 D +L + + + FP+T H+E + R Sbjct: 455 DAGLLVHQAGYRCVAAGVVNMFPHTAHVESMAVFER 490 >gi|283851428|ref|ZP_06368709.1| RNA methyltransferase, TrmA family [Desulfovibrio sp. FW1012B] gi|283573166|gb|EFC21145.1| RNA methyltransferase, TrmA family [Desulfovibrio sp. FW1012B] Length = 449 Score = 214 bits (545), Expect = 2e-53, Method: Composition-based stats. Identities = 73/382 (19%), Positives = 137/382 (35%), Gaps = 45/382 (11%) Query: 9 QYEQQLAEKVDRLRQMMLAF-QVPNLQIFRSEP----IHYRMRAEFHIWHDGDDLYHIMF 63 Y Q K +++ + + +P++ + + P YR + EF G + Sbjct: 88 DYGAQRFWKREQVAETLARLAGLPDVPVAETVPSPKTYEYRNKMEFAFA--GKLHLGLHE 145 Query: 64 DQQTKERMRIDYFMPGSLLINAL-----------MIEMMATIRLEPLLRAKLFQIDYLTS 112 ++ + I ++ + + + + R + + T Sbjct: 146 RRRPGRVLDIATCRLMPPWVSQVLAFVRDRCAATGLAAFDARSGKGVWRHLVLRQSAATG 205 Query: 113 QSDQAIVTLIY------HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY 166 ++T + +A + +H+ + I + + L DY Sbjct: 206 ARLAHLITGPARGAGDAAHQIGEALLAAFPEVTGFVHSVRRAPAAIAQGERQVFALGVDY 265 Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSL 225 ++E++ + ++F Q N + V AA + +LYCG G +L Sbjct: 266 LEEQVGPS----RLHVSADAFAQTNTEAAAGLYALVAAAAGSAPDGVAWDLYCGCGGITL 321 Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285 LA HF V +E K +V A + ++V N + Sbjct: 322 ALAPHFGTVFGLESDKRAVADAVKSAELSNVANCIFKAGDAATALS-------------- 367 Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILSTTHTIER 343 D+ + + +DPPRSG + + A I+Y+SCNP +L RDL IL + + R Sbjct: 368 DLAATHPAVVVLDPPRSGAAPEVLSALLDAAPKKIVYVSCNPGTLARDLKILGDLYAVTR 427 Query: 344 LALFDQFPYTRHMECGVLLVRK 365 + D FP T H+E L R+ Sbjct: 428 VTPVDMFPQTAHIEAVAELERR 449 >gi|160872624|ref|ZP_02062756.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Rickettsiella grylli] gi|159121423|gb|EDP46761.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Rickettsiella grylli] Length = 443 Score = 214 bits (545), Expect = 2e-53, Method: Composition-based stats. Identities = 85/375 (22%), Positives = 136/375 (36%), Gaps = 30/375 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEP----IHYRMRAEFHIWHDGDD 57 L ++ QL K L + + YR RA + + Sbjct: 85 GCNLQHLNHQAQLQHKEKILVNQLTHVAKTKPTSLLAPVMATGWGYRRRARLGVKYVAKK 144 Query: 58 L--YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115 ++ +I ++ L+I + I+ + QI+ Sbjct: 145 QAVLVGFREKNGHYLAQIQTCKTLDFRVDRLLIPLQQLIQSLNAFHD-IPQIEVALGDEI 203 Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY---VDERL- 171 +V R L + L++ Q+ L KT C+ + + RL Sbjct: 204 LGLV----FRHLVPLNNSDVLALKNFAKKYSVQLYLQPGNEKTTHCIWPENPQLLSYRLQ 259 Query: 172 TVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKG-IQGDLLELYCGNGNFSLVLARH 230 A R+L + + F Q NA IN M++ + +L+L+CG GNFSL LA Sbjct: 260 NKAHRSLEFFFEPHHFIQINATINQAMIQHAIELLSPHFSDRILDLFCGLGNFSLPLALR 319 Query: 231 FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY 290 V+ +E VE A+ N N +NN + + LK++ Sbjct: 320 CQSVVGIEGHSALVEQAKINARHNAINNTQFYTAD-----------LTGSILKEVWAQQT 368 Query: 291 RFKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSIL-STTHTIERLALFD 348 F I +DPPRSG + + + ++YISCNP +L RD L + +ER + D Sbjct: 369 -FNKILLDPPRSGALEVIQQIARWKVEKMVYISCNPATLARDSEELIKQGYHLERAGIMD 427 Query: 349 QFPYTRHMECGVLLV 363 FP T H E L Sbjct: 428 MFPQTHHSEAICLFT 442 >gi|313200748|ref|YP_004039406.1| TrmA family RNA methyltransferase [Methylovorus sp. MP688] gi|312440064|gb|ADQ84170.1| RNA methyltransferase, TrmA family [Methylovorus sp. MP688] Length = 454 Score = 214 bits (545), Expect = 2e-53, Method: Composition-based stats. Identities = 79/392 (20%), Positives = 139/392 (35%), Gaps = 48/392 (12%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSE----PIHYRMRAEFHIWH--DG 55 L + Q+A K L + + YR +A + H Sbjct: 77 GCALQHMDFSGQVAAKQRLLEGNLWHIGKVKAETMLPPIYGPAWGYRHKARLRVRHVPKK 136 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115 + ++ + +D ++AL++ + I +R +L QI+ + Sbjct: 137 GGVLVGFNEKASSFVAHMDSCEVLPPHVSALIVPLQHMIAQL-SVRERLPQIEVAVGEQA 195 Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC---LDRDYVDERLT 172 +V R+L+ E L+ QI + T + L+ + L Sbjct: 196 TVLVL----RILEALRPEDGPILKAFADTHGVQIWTQTKGPDTVMPFYPLNGPALTYSLP 251 Query: 173 VAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHF 231 T ++ E FTQ N IN ML + D + + +CG GNF+L +AR Sbjct: 252 EFQLTYPFKPTE--FTQVNPHINRVMLRRAMQLLGAQPQDRIADFFCGLGNFTLPIARSG 309 Query: 232 DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291 VL +E + V A + + N + + Q RE + ++ + S Sbjct: 310 ATVLGMEGSAALVARAVESASLNGLAD------------QVEYREADLFKMTPEALQSLG 357 Query: 292 -FKTIFVDPPRSGLDDATVGM----------------VQAYPHILYISCNPDSLCRDLSI 334 F +DPPR G + + V I+Y+SCNP +L RD + Sbjct: 358 YFDKWLIDPPRDGALELIKSLADVGRGEDGAMPVAPKVAGPERIVYVSCNPATLARDAGV 417 Query: 335 LS--TTHTIERLALFDQFPYTRHMECGVLLVR 364 L + + + + FP+T H+E L + Sbjct: 418 LVNLKGYRLLAAGVINMFPHTSHVESIALFEK 449 >gi|134094485|ref|YP_001099560.1| 23S rRNA 5-methyluridine methyltransferase [Herminiimonas arsenicoxydans] gi|133738388|emb|CAL61433.1| 23S rRNA (Uracil-5-)-methyltransferase rumA (23S rRNA(M-5-U1939)-methyltransferase) [Herminiimonas arsenicoxydans] Length = 461 Score = 214 bits (545), Expect = 2e-53, Method: Composition-based stats. Identities = 73/385 (18%), Positives = 141/385 (36%), Gaps = 33/385 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWH--DG 55 ++ + Q+A K L + + YR RA + + Sbjct: 82 GCSMQHLEPTAQVAMKQRILEDNLKHIGKVKAETMLRPIHGPTWGYRYRARISVRNVPKK 141 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115 + ++++ + ++A+++ + I ++ L QI+ Q + Sbjct: 142 GGVLVGFHERKSSFITDMKTCEILPANVSAMLVPLRHLIGSLSIIDH-LPQIELAIGQGE 200 Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKT--KICLDRDYVDERLTV 173 Q +T + R++ E ++L+ K Q L + + + + + L Sbjct: 201 QDKITALVLRIMAPLSAEDDVKLKAFADEYKVQWWLQPAGPDSAYQFYPEDENLHYSLPE 260 Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFD 232 G + ++ FTQ N IN ++ L D + +L+CG GNF+L +A Sbjct: 261 FGIKMPFK--PTDFTQVNHQINRVLVARALRLLDAQATDRIADLFCGLGNFTLPIATQAG 318 Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292 V+ +E + E A N AN + A F D I +F Sbjct: 319 EVVGIEGSTTLTERALENAVANGLAG-----------KTAFYSRNLFEAKTDDFIALGKF 367 Query: 293 KTIFVDPPRSGLDDATVGMV--------QAYPHILYISCNPDSLCRDLSIL--STTHTIE 342 + +DPPR G + I+Y+SCNP +L RD ++L + ++ Sbjct: 368 DRMLIDPPRDGALAVCEALAGLNAVRPDLLPSRIVYVSCNPSTLARDAAVLVNEGPYVLK 427 Query: 343 RLALFDQFPYTRHMECGVLLVRKPS 367 + + FP+T H+E + K + Sbjct: 428 NAGVVNMFPHTSHVESMAVFELKET 452 >gi|15618794|ref|NP_225080.1| rRNA methyltransferse [Chlamydophila pneumoniae CWL029] gi|4377204|gb|AAD19023.1| rRNA Methyltransferse [Chlamydophila pneumoniae CWL029] Length = 401 Score = 214 bits (545), Expect = 2e-53, Method: Composition-based stats. Identities = 79/396 (19%), Positives = 147/396 (37%), Gaps = 44/396 (11%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN---LQIFRSEPIHYRMRAEFHIW--HDGD 56 + Y L +K + L Q+ + I S + R + EF + ++G+ Sbjct: 15 GCSFPQSNYSDSLKKKEELLHQLFAPLVPSDMIAPIIPCSPSLRGRNKMEFSFFQTYEGE 74 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLL--------RAKLFQID 108 + + K+ + + + ++ P L + L + Sbjct: 75 KSLGFISSTKPKKGIPVTTCLLIHEQTMDILKLTREWWDKHPELMAYFPPKNKGSLCTLT 134 Query: 109 YLTSQSDQ--AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANK--------- 157 T Q ++ C ++ L + I I K Sbjct: 135 VRTGSPQQNFMVILTTSGTPEYRVNEACIDEWKEILLSSSLNIASIYWEEKVAARGISTY 194 Query: 158 --TKICLDRDYVDERLTVAG--RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD- 212 TK+ + ++L++ + + SF QP ++E + Sbjct: 195 YETKLLYGAPSIQQKLSLPSDGNSASFSLRPRSFFQPQITQAAKIIETAKEFINPEGSET 254 Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 LL+LYCG G ++L+ + V+ VEI +V +A+ NI AN+ + V + E +A Sbjct: 255 LLDLYCGAGTIGIMLSPYVKNVIGVEIIPDAVASAQENIKANNKEDCVEVYL---EDAKA 311 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDS-LC 329 + E + D I +DPPR G+ + + P I+YISCNP + Sbjct: 312 FCKRNENCKAPD---------VIIIDPPRCGMQSKVLKYILRIGSPKIVYISCNPKTQFQ 362 Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 ++S + I+++ DQFPY+ H+E +LL R+ Sbjct: 363 ECADLISGGYRIKKMQPIDQFPYSTHLENIILLERE 398 >gi|15836418|ref|NP_300942.1| rRNA methyltransferse [Chlamydophila pneumoniae J138] gi|16752151|ref|NP_445518.1| RNA methyltransferase [Chlamydophila pneumoniae AR39] gi|33242245|ref|NP_877186.1| protein Hom1 [Chlamydophila pneumoniae TW-183] gi|12644494|sp|Q9Z721|Y885_CHLPN RecName: Full=Uncharacterized RNA methyltransferase CPn_0885/CP_0981/CPj0885/CpB0914 gi|8163534|gb|AAF73721.1| RNA methyltransferase, TrmA family [Chlamydophila pneumoniae AR39] gi|8979259|dbj|BAA99093.1| rRNA methyltransferse [Chlamydophila pneumoniae J138] gi|33236756|gb|AAP98843.1| protein Hom1 [Chlamydophila pneumoniae TW-183] Length = 401 Score = 214 bits (545), Expect = 2e-53, Method: Composition-based stats. Identities = 79/396 (19%), Positives = 147/396 (37%), Gaps = 44/396 (11%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN---LQIFRSEPIHYRMRAEFHIW--HDGD 56 + Y L +K + L Q+ + I S + R + EF + ++G+ Sbjct: 15 GCSFPQSNYSDSLKKKEELLHQLFAPLVPSDMIAPIIPCSPSLRGRNKMEFSFFQTYEGE 74 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLL--------RAKLFQID 108 + + K+ + + + ++ P L + L + Sbjct: 75 KSLGFISSTKPKKGIPVTTCLLIHEQTMDILKLTREWWDKHPELMAYFPPKNKGSLCTLT 134 Query: 109 YLTSQSDQ--AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANK--------- 157 T Q ++ C ++ L + I I K Sbjct: 135 VRTGSPQQNFMVILTTSGTPEYRVNEACIDEWKEILLSSSLNIASIYWEEKVAARGISTY 194 Query: 158 --TKICLDRDYVDERLTVAG--RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD- 212 TK+ + ++L++ + + SF QP ++E + Sbjct: 195 YETKLLYGAPSIQQKLSLPSDGNSASFSLRPRSFFQPQITQAAKIIETAKEFINPEGSET 254 Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 LL+LYCG G ++L+ + V+ VEI +V +A+ NI AN+ + V + E +A Sbjct: 255 LLDLYCGAGTIGIMLSPYVKNVIGVEIIPDAVASAQENIKANNKEDCVEVYL---EDAKA 311 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDS-LC 329 + E + D I +DPPR G+ + + P I+YISCNP + Sbjct: 312 FCKRNENCKAPD---------VIIIDPPRCGMQSKVLKYILRIGSPKIVYISCNPKTQFQ 362 Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 ++S + I+++ DQFPY+ H+E +LL R+ Sbjct: 363 ECADLISGGYRIKKMQPIDQFPYSTHLENIILLERE 398 >gi|207723158|ref|YP_002253557.1| rna methyltransferase protein [Ralstonia solanacearum MolK2] gi|206588352|emb|CAQ35315.1| rna methyltransferase protein [Ralstonia solanacearum MolK2] Length = 482 Score = 214 bits (545), Expect = 2e-53, Method: Composition-based stats. Identities = 78/385 (20%), Positives = 137/385 (35%), Gaps = 40/385 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWH--DG 55 ++ QLA K L + + YR RA + H Sbjct: 115 GCSMQHLDSRAQLAIKQRVLEDDLWHLAKLRPDVVFRPIAGPDWGYRYRARLTVRHVAAK 174 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115 + ++++ + ++AL++ + + ++ ++ Q++ Q Sbjct: 175 GGVLVGFHERKSSYVADMTSCEVLPPHVSALLVPLRELVGRLSIV-QRMPQVEVAVGQDV 233 Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDAL--HARKYQIQLIGRANKTKICLDRDYVDERLTV 173 A+V R+L+ LR HA ++ +Q G + L Sbjct: 234 TALVL----RILEPLTPADEAELRAFADRHAVQFWLQPKGPDTVYPFYPLDRALTYTLPE 289 Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFD 232 G T+ ++ FTQ N IN ++ VL GD LL+L+CG GNF+L +A Sbjct: 290 FGITMPFK--PTDFTQVNHQINRVLMSRVLKLLDARPGDRLLDLFCGIGNFTLPMATRGR 347 Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292 V+ +E ++ A N N + + F D RF Sbjct: 348 EVMGIEGSETLTTRALANAQHNGL-----------DAKTTFACRNLFEVSADDIAALGRF 396 Query: 293 KTIFVDPPRSGLDDATVGMVQ-----------AYPHILYISCNPDSLCRDLSIL--STTH 339 VDPPR G + + + I+Y+SCNP +L RD +L + Sbjct: 397 DRWLVDPPREGALAVSKALAELSQRGGEAAALLPGRIVYVSCNPATLARDAGLLVHEAGY 456 Query: 340 TIERLALFDQFPYTRHMECGVLLVR 364 + + + FP+T H+E + R Sbjct: 457 RLSGAGVVNMFPHTSHVESIAVFDR 481 >gi|78184707|ref|YP_377142.1| 23S rRNA methyltransferase/RumA [Synechococcus sp. CC9902] gi|78169001|gb|ABB26098.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Synechococcus sp. CC9902] Length = 469 Score = 214 bits (545), Expect = 2e-53, Method: Composition-based stats. Identities = 75/396 (18%), Positives = 145/396 (36%), Gaps = 48/396 (12%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIF-----RSEPIHYRMRAEFHIWHDGD 56 TL Q + KV L+Q M + S + YR RA + +GD Sbjct: 90 GCTLQSLNESAQNSWKVSSLQQTMQRIGGIDDTPLPLLADESRGLGYRNRALIPLNREGD 149 Query: 57 DL-YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIR------LEPLLRAK-LFQID 108 + ++ + +++ ++ L+ + + L+ AK L + Sbjct: 150 GRLRAGYYRPRSHRIVNLNHCPVLDPRLDQLIEPIKQDLDSTGWAADHDLIHAKGLRHLG 209 Query: 109 YLTSQ-SDQAIVTLIYHR-------LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKI 160 S + ++TLI L + W + ++ + + + +T + Sbjct: 210 LRLGHHSGEVLITLISSHDRYPGLLELAEEWMDRWHMVKGVCLNLQPKPNNLVLGAQTFL 269 Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGI--QGDLLELYC 218 D + E + + +F Q N ++ + K +G +++ YC Sbjct: 270 VAGSDTIAEEFC----GIHLQLSSTTFFQINTPQAERIVHVLCDWLKTELGEGTVVDAYC 325 Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV-NNVKIVRMSSKEFTQAMRRER 277 G G SL LA V+ +E+ + SV+ A N N++ + + ++ Sbjct: 326 GIGTISLPLAAQGFEVIGLELHQGSVDQALLNAMRNNLSKGCRFRAGDVVDLLES----- 380 Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSIL 335 + + +DPPR GLD + + P + Y+SC+P + RDL +L Sbjct: 381 ----------ALFGADALVLDPPRRGLDARVIQTILDNPPKRLAYLSCDPATQARDLKLL 430 Query: 336 ---STTHTIERLALFDQFPYTRHMECGVLLVRKPSG 368 + + +++ D FP T H+E LL R S Sbjct: 431 MQPAGPYRLKKHQPIDFFPQTTHLESLALLERVNSE 466 >gi|300742321|ref|ZP_07072342.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Rothia dentocariosa M567] gi|300381506|gb|EFJ78068.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Rothia dentocariosa M567] Length = 376 Score = 214 bits (545), Expect = 2e-53, Method: Composition-based stats. Identities = 84/383 (21%), Positives = 147/383 (38%), Gaps = 40/383 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAF-QVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60 S T + Y QLA K R+++ A+ + L+ S+ H+R +A+ + Sbjct: 13 SCTNIETPYPAQLAAKQADARRLLAAYPHLTWLEPVASDEAHFRNKAKLVAGGSAQNPSL 72 Query: 61 IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLE-------PLLRAKLFQIDYLTSQ 113 + D ++ + I + + I+ P R +L I S+ Sbjct: 73 GIVDYRSGRATDLSECPLYIEPIERAIPVLHELIQRADLTPYDIPARRGELKNILVTASE 132 Query: 114 SDQAIVTLI-YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLT 172 + + +V + + L R L++ L K + + + ++ D +E + Sbjct: 133 TGELMVRFVLRSKKLLVPIRRQLGWLQERLP--KLAVLSVNLLREHVALIEGD--EEIIL 188 Query: 173 VAGRTLIYRQ-------IENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFS 224 +TL R SF Q N I M E +Q L +LYCG G F+ Sbjct: 189 TERQTLPMRVNGMSLHLRPQSFFQTNTQIAQAMYEQGREWVSQVQPRTLWDLYCGVGGFA 248 Query: 225 LVLARHF-DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 L A+ V +EI+ ++ +A+ +A + VK + EF R E Sbjct: 249 LHAAQVMHGEVTGIEISVEAIRSAQRTVAEQGLKGVKFAAGDATEFAVNARETPEM---- 304 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILSTTHTI 341 + V+PPR G+ + V+ H++Y SCN +L DL+ + + + Sbjct: 305 -----------LVVNPPRRGIGERLCAWVEGSGIEHVIYSSCNAKTLAADLARMPS-YRP 352 Query: 342 ERLALFDQFPYTRHMECGVLLVR 364 + D FP+T H E LL R Sbjct: 353 IAARVLDMFPHTNHYEVMTLLKR 375 >gi|194476527|ref|YP_002048706.1| 23S rRNA methyltransferase/RumA [Paulinella chromatophora] gi|171191534|gb|ACB42496.1| 23S rRNA methyltransferase/RumA [Paulinella chromatophora] Length = 448 Score = 214 bits (545), Expect = 2e-53, Method: Composition-based stats. Identities = 81/385 (21%), Positives = 147/385 (38%), Gaps = 42/385 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFR----SEPIHYRMRAEFHIWHDGDD 57 +L + Q+A K + + + +++ +EPI YR +A + Sbjct: 81 GCSLQSINEQAQVAWKQHYVSETLNRLSGIEVKVLPLLITNEPIKYRNKALIPLEQTSSG 140 Query: 58 -LYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLE--PLLRAKLFQIDYLT--- 111 L + + + + + +D I+ L+ + A + P+ L I +L Sbjct: 141 WLRAGFYRRASHQIVNMDNCPLLDPRIDTLVEPIKADLETSHWPIDIHSLNGIRHLCLKV 200 Query: 112 -SQSDQAIVTLIYH-------RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD 163 +++ I+TL+ L W + ++ + + + + TK Sbjct: 201 GILTNEIIITLVSSHDRMPGISKLAQHWMQRWPQVVGVCLNLQPNLDNVAIGSSTKTIAG 260 Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGN 222 R ++ ER L R ++F Q N + ++ + G +L+ Y G G Sbjct: 261 RPWLIERFC----NLNLRIASDTFFQINTLQAERAVNFLASILNVSTGPKILDAYSGVGT 316 Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282 SL LA VL +E+ SV AR N N + + + + E Sbjct: 317 LSLPLAAAGANVLGLELRYSSVIHARLNAKLNSITSARFEHVDVAEALA----------- 365 Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSI--LSTT 338 +H + VDPPR GL+ + + A P +Y+SCNP +L RDL + L+ Sbjct: 366 ----LHLPSSDALIVDPPRKGLELEVIKQIIANPADQTVYLSCNPSTLARDLRLLTLAGN 421 Query: 339 HTIERLALFDQFPYTRHMECGVLLV 363 + + D FP T H+EC +L Sbjct: 422 IKVTFIQPIDFFPKTTHVECLTILE 446 >gi|195591421|ref|XP_002085439.1| GD12311 [Drosophila simulans] gi|194197448|gb|EDX11024.1| GD12311 [Drosophila simulans] Length = 605 Score = 214 bits (544), Expect = 2e-53, Method: Composition-based stats. Identities = 81/422 (19%), Positives = 153/422 (36%), Gaps = 64/422 (15%) Query: 3 GTLLIDQYEQQLAEKVDRLRQMMLAF----------QVPNLQIFR-----SEPI--HYRM 45 L Y+QQL +K + + ++ + P+L F+ P YR Sbjct: 165 CPLSHIAYDQQLKQKSEEMSALLAKYTQELRRVNPRAKPHLDKFQFHGVLPSPTVNGYRN 224 Query: 46 RAEFHIWHDGDD-----LYHIMFDQQTKERMRI---DYFMPGSLLINALMIEMMATIRLE 97 + EF + + + + E + + + +++ + Sbjct: 225 KNEFTVGKNSAGEVVVGFRLGCYSDGSVEVAEVADLPHLPEQAKWAARSFQDLVRKSKFL 284 Query: 98 PL--------LRAKLFQIDYLTSQSDQAIVTLIYHRLL-DDAWRECAIRLRDALHARK-- 146 P R + + T + +V IY L +D E L+ Sbjct: 285 PFNPDGNVGHFRQLMVRCSSATGE--LMLVAGIYSSNLSEDEQVELKQELKSFYEELGKD 342 Query: 147 ---------YQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVH 197 YQ A +T ++ +T + L +R +F Q N Sbjct: 343 APYKCTSLYYQDVKHREAGQTINPVEHISGSTHITDTIQGLQFRISPLAFFQINTEGANV 402 Query: 198 MLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV 256 + + + + +L++ CG G +L A+H +V+ VEI +++ A +N AN + Sbjct: 403 LYQKAIDLVAPTKDTTMLDICCGTGTITLAFAKHCKKVMGVEIVPDAIKDAEFNAEANGI 462 Query: 257 NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--- 313 N K ++ +F ++M RE +++ + VDPPR+GL ++ ++ Sbjct: 463 KNAKFFTGNADDFIKSMVREALYDQEPVKPLDL----IAVVDPPRAGLHHRSIAAIRSAD 518 Query: 314 AYPHILYISCNPDSLCRDLSIL---------STTHTIERLALFDQFPYTRHMECGVLLVR 364 A ++Y+SCNP S R+ L + D FP+T H E +L R Sbjct: 519 AINRLVYVSCNPHSAKRNFIELARPESKQYKGEPFYPKSAVAVDMFPHTMHTELVILFER 578 Query: 365 KP 366 +P Sbjct: 579 EP 580 >gi|123441098|ref|YP_001005087.1| 23S rRNA 5-methyluridine methyltransferase [Yersinia enterocolitica subsp. enterocolitica 8081] gi|226725400|sp|A1JJR0|RUMA_YERE8 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|122088059|emb|CAL10847.1| 23s rRNA (uracil-5-)-methyltransferase [Yersinia enterocolitica subsp. enterocolitica 8081] gi|330859216|emb|CBX69567.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Yersinia enterocolitica W22703] Length = 443 Score = 214 bits (544), Expect = 2e-53, Method: Composition-based stats. Identities = 76/365 (20%), Positives = 145/365 (39%), Gaps = 32/365 (8%) Query: 12 QQLAE--KVDRLRQMMLAFQVPNLQ---IFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66 QL + K D L+++++ Q + YR RA + + M +Q Sbjct: 97 SQLQQMSKADSLQRLIMREAGACPQLDPVICGSEYGYRRRARLGLLYQPKQHRLQMGFRQ 156 Query: 67 T--KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 T + + I + + L++ + + +R +L ++ + + + +V Sbjct: 157 TESHDLVCIKHCPVLRPELERLLLPLYQCLSGLQAVR-RLGHVELVLADNGPLMVL---- 211 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 R LD L D + + L G ++ + + E L Sbjct: 212 RHLDTLKEVDRAALIDFAKREQVAVYLAGDSDNVEKLIG-----EEPYYQIEGLRLAFHP 266 Query: 185 NSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 F Q N +N M+ +A +L+L+CG GNF+L LA+ V+ VE Sbjct: 267 RDFIQVNDTVNQQMVAQAIAWLDVQPDERVLDLFCGMGNFTLPLAKLAREVVGVEGVAAL 326 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 V +YN N + NV + + + + + F + +DP R+G Sbjct: 327 VANGQYNALNNALPNVSFFHENLE------------SDISRQPWATQGFDKVLLDPARAG 374 Query: 304 LDDATVGMVQAYP-HILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVL 361 +V+ P ++Y+SCNP +L RD +L+ + + ++ + D FP+T H+E L Sbjct: 375 AAGVMSHIVKLAPKRVVYVSCNPTTLARDSQVLLAAGYRLAQVRMLDMFPHTGHLESMAL 434 Query: 362 LVRKP 366 +++P Sbjct: 435 FMQEP 439 >gi|113868344|ref|YP_726833.1| 23S rRNA 5-methyluridine methyltransferase [Ralstonia eutropha H16] gi|122946761|sp|Q0K956|RUMA_CUPNH RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|113527120|emb|CAJ93465.1| tRNA (Uracil-5-)-methyltransferase [Ralstonia eutropha H16] Length = 441 Score = 214 bits (544), Expect = 2e-53, Method: Composition-based stats. Identities = 76/380 (20%), Positives = 131/380 (34%), Gaps = 33/380 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWH--DG 55 ++ QLA K L + + YR RA + H Sbjct: 77 GCSMQHLDSRAQLAIKQRVLEDNLWHLSKVKPDVVFRPIAGPDWGYRYRARLTVRHVAKK 136 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115 + ++++ + ++A+++ + + +R ++ QI+ Q Sbjct: 137 GGVLVGFHERKSSYVADMTRCEILPPHVSAMLVPLRELVGGL-SIRDRMPQIELAVGQEV 195 Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175 A+V R+L+ LR K Q L + T + T+ Sbjct: 196 TALVL----RILEPLTDADKDLLRAFADQHKVQFWLQPKGPDTVYPFYPADAELAYTLPE 251 Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRV 234 + FTQ N IN ++ L D LL+L+CG GNF+L LA V Sbjct: 252 FGIRMPFKPTDFTQVNHQINRVLIGRALRLLDAQPQDRLLDLFCGIGNFTLPLATQGKSV 311 Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294 + +E ++ A N N + + EF F + RF Sbjct: 312 MGIEGSEALTTRALANAEYNGL-------AARTEFAC----RNLFEVTAEDIAALGRFDR 360 Query: 295 IFVDPPRSGLDDATVGMVQ--------AYPHILYISCNPDSLCRDLSIL--STTHTIERL 344 VDPPR G + + I+Y+SC+P +L RD +L + + Sbjct: 361 WLVDPPREGALAVCKALGELAQQGSNVLPQRIVYVSCSPATLARDAGLLVHGAGYRLAGA 420 Query: 345 ALFDQFPYTRHMECGVLLVR 364 + + FP+T H+E + R Sbjct: 421 GVVNMFPHTSHVESIAVFER 440 >gi|229825365|ref|ZP_04451434.1| hypothetical protein GCWU000182_00719 [Abiotrophia defectiva ATCC 49176] gi|229790737|gb|EEP26851.1| hypothetical protein GCWU000182_00719 [Abiotrophia defectiva ATCC 49176] Length = 514 Score = 214 bits (544), Expect = 2e-53, Method: Composition-based stats. Identities = 76/426 (17%), Positives = 143/426 (33%), Gaps = 82/426 (19%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAE--FHIWHDG 55 + YE+QL K ++++M+ + + + R + E F + G Sbjct: 82 GCSYHTLPYEEQLKLKSTQVKKMLDRVITTDYEYEEILGSPNEWETRNKMEYAFGDSYKG 141 Query: 56 DDLYHIMFDQQT-KERMRIDYFMPGS-----------LLINALMIEMMATIRLEPLLRAK 103 + + + + + D + N I LR Sbjct: 142 GPMSLGLHKRGHFHDILYTDDCKIVNDDFNKVLRCVFEHFNEAEISFYNKAMHRGYLRHL 201 Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDAL--------------------- 142 L + T + A+ T + L++ L Sbjct: 202 LVRRAAKTGEILVALETSSDFITKSEKNAMEMDSLKEFLASSNAVYDKDKEQSQAEKNIL 261 Query: 143 --------------------HARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182 H ++ +A + +I RDY++E L L ++ Sbjct: 262 AKMVEKLRKVSLEGEIVGIIHLINNEVSDDVKAERQEILFGRDYINEELL----GLKFKI 317 Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFSLVLARHFDRVLAVEIAK 241 SF Q N+ + V +G+++ +LY G G +++ +V+ +EI + Sbjct: 318 TTFSFFQTNSLGAEVLYSKVREYVGNNEGNVVYDLYSGTGTIGQIISPVAKKVIGIEIVE 377 Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301 +V AA N N + N + + + D + I +DPPR Sbjct: 378 EAVIAANENAKLNGLTNTEFLAGDVFKVL---------------DEVKEKPDFIILDPPR 422 Query: 302 SGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMEC 358 G+ + V +Y I+YI+C P SL RD+ + ++++ L D FP T H+E Sbjct: 423 DGVSPKALKRVLSYGVRDIVYIACKPTSLVRDIPEFEAVGYRVKKVCLCDMFPETLHVET 482 Query: 359 GVLLVR 364 LL + Sbjct: 483 VCLLSK 488 >gi|326316746|ref|YP_004234418.1| TrmA family RNA methyltransferase [Acidovorax avenae subsp. avenae ATCC 19860] gi|323373582|gb|ADX45851.1| RNA methyltransferase, TrmA family [Acidovorax avenae subsp. avenae ATCC 19860] Length = 490 Score = 214 bits (544), Expect = 2e-53, Method: Composition-based stats. Identities = 78/396 (19%), Positives = 135/396 (34%), Gaps = 44/396 (11%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFR----SEPIHYRMRAEFHIWH--DG 55 + Q+A K L + + YR RA + H Sbjct: 105 GCKMQHLHVGAQVAVKQRVLEDNLWHLGKVKAETVMRPIEGPAWGYRYRARLAVRHVAKK 164 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115 + +++++ ++ ++AL++ M A I R QI+ Sbjct: 165 GKVLVGFHERKSRYIADMEVCPVLPPHVSALLMPMRALIASMDA-RDTCPQIELACGDDV 223 Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL--DRDYVDERLTV 173 A+V R L+ RLR A Q L + T L ++ L Sbjct: 224 TALVL----RHLEPLSEADLDRLRAFAAAHGVQWWLQPKGPDTVHLLEEGGPQLNYALPD 279 Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFD 232 G T+ ++ FTQ N IN ++ L G +++ +CG GNF+L +A Sbjct: 280 FGITMPFK--PTDFTQVNPHINRVLVTRALRLLDAGRADRVIDWFCGLGNFTLPIATQAR 337 Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292 V+ +E ++ V +R N N + + ++ F F ++ I Sbjct: 338 EVVGIEGSEALVARSRENYRKNQDDRPQGQALAPTTFV----ARNLFEMTPEMLIADGVA 393 Query: 293 KTIFVDPPRSGLDDATVGMVQAY----------------------PHILYISCNPDSLCR 330 VDPPR G + + I+Y+SCNP +L R Sbjct: 394 DKWLVDPPREGAFALAKALADIHQARIGTEDAPALPASAEGWTPPQRIVYVSCNPATLAR 453 Query: 331 DLSIL--STTHTIERLALFDQFPYTRHMECGVLLVR 364 D +L + + + FP+T H+E + R Sbjct: 454 DAGLLVHQAGYRCVAAGVVNMFPHTAHVESMAVFER 489 >gi|153001658|ref|YP_001367339.1| 23S rRNA 5-methyluridine methyltransferase [Shewanella baltica OS185] gi|226725387|sp|A6WR37|RUMA_SHEB8 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|151366276|gb|ABS09276.1| RNA methyltransferase, TrmA family [Shewanella baltica OS185] Length = 450 Score = 214 bits (544), Expect = 2e-53, Method: Composition-based stats. Identities = 79/374 (21%), Positives = 137/374 (36%), Gaps = 29/374 (7%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRS----EPIHYRMRAEFHIWHDGDD 57 L Q K L +M F E HYR RA D + Sbjct: 91 GCDLQHMSLSGQREHKEAALLDIMAKFAGAEGGTLSPALTGEGWHYRRRARLATLFDKNT 150 Query: 58 LYH--IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115 + + + I + ++ L++ A + + +A L ++ + + + Sbjct: 151 KHLSLGFRAASSSNVVPISQCQVLAKPLSDLIVP-FAKLLNQLSAKASLGHLELIAADNG 209 Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQL-IGRANKTKICLDRDYVDERLTVA 174 V I L D + + L Q + ++ L V + L Sbjct: 210 HFAVLRITKALNDKDLAKLSAFAEQHLIHICLQDNEGQFQGVGAELVL---PVYQLLGDK 266 Query: 175 GRT--LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHF 231 + + +F Q N IN M+ L + +L+L+CG GNFSL LA+ Sbjct: 267 AESDAVSLSFTPGNFVQVNGQINKAMVAQALDWLAPAPDERILDLFCGMGNFSLPLAKMG 326 Query: 232 DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291 V+ VE V AR N AN+++ + + + E ++ Sbjct: 327 ADVIGVEGVAEMVTQARVNAKANNLDKLTFYHGD---LSADLSLEPWMGKI--------- 374 Query: 292 FKTIFVDPPRSGLDDATVGMVQAYPH-ILYISCNPDSLCRD-LSILSTTHTIERLALFDQ 349 + +DP R+G ++ + + P ++Y+SCNP SL RD +L + +++L L D Sbjct: 375 -DKLLLDPARAGAFESLQWLKKMKPRKVVYVSCNPASLARDSAVLLERGYRLQQLGLIDM 433 Query: 350 FPYTRHMECGVLLV 363 FP T H+E L Sbjct: 434 FPQTHHIEAMALFE 447 >gi|311112240|ref|YP_003983462.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Rothia dentocariosa ATCC 17931] gi|310943734|gb|ADP40028.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Rothia dentocariosa ATCC 17931] Length = 376 Score = 214 bits (544), Expect = 3e-53, Method: Composition-based stats. Identities = 82/383 (21%), Positives = 146/383 (38%), Gaps = 40/383 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAF-QVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60 S T + Y Q+A K R+++ A+ + L+ S+ H+R +A+ + + Sbjct: 13 SCTSIETPYPAQIAAKQADARRLLAAYPHLTWLEPVASDEAHFRNKAKLVVGGSAQNPSL 72 Query: 61 IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLE-------PLLRAKLFQIDYLTSQ 113 + D ++ + I + + I+ P R +L I S Sbjct: 73 GIVDYRSGRATDLSECPLYIEPIERAIPVLHELIQRADLTPYDIPARRGELKNILVTASD 132 Query: 114 SDQAIVTLI-YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLT 172 + + +V + + L R L++ L K + + + ++ D +E + Sbjct: 133 TGELMVRFVLRSKKLLVPIRRQLGWLQERLP--KLAVLSVNLLREHVALIEGD--EEIIL 188 Query: 173 VAGRTLIYRQ-------IENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFS 224 +TL R SF Q N I M +Q L +LYCG G F+ Sbjct: 189 TDRQTLPMRVNGMSLHLRPQSFFQTNTQIAQAMYAQGREWVAQVQPRTLWDLYCGVGGFA 248 Query: 225 LVLARHF-DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283 L A+ V +EI+ ++ +A+ +A + VK + EF R E Sbjct: 249 LHAAQVMHGEVTGIEISAEAIRSAQRTVAEQGLEGVKFAAGDATEFAVNARETPEM---- 304 Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILSTTHTI 341 + V+PPR G+ + V+ H++Y SCN +L DL+ + + + Sbjct: 305 -----------LVVNPPRRGIGERLCAWVEGSEIEHVIYSSCNAKTLASDLARMPS-YKP 352 Query: 342 ERLALFDQFPYTRHMECGVLLVR 364 + D FP+T H E LL R Sbjct: 353 VAARVLDMFPHTNHYEVMTLLRR 375 >gi|24212992|ref|NP_710473.1| tRNA (uracil-5-)-methyltransferase [Leptospira interrogans serovar Lai str. 56601] gi|45656154|ref|YP_000240.1| RNA methyltransferase [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|50401584|sp|Q8F9A3|Y292_LEPIN RecName: Full=Uncharacterized RNA methyltransferase LA_0292 gi|51316691|sp|Q72VP7|Y249_LEPIC RecName: Full=Uncharacterized RNA methyltransferase LIC_10249 gi|24193673|gb|AAN47491.1| tRNA (uracil-5-)-methyltransferase [Leptospira interrogans serovar Lai str. 56601] gi|45599387|gb|AAS68877.1| RNA methyltransferase [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 393 Score = 214 bits (544), Expect = 3e-53, Method: Composition-based stats. Identities = 79/396 (19%), Positives = 145/396 (36%), Gaps = 52/396 (13%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL-QIFRSE-PIHYRMRAEFHIWH----DG 55 L YE+QL K + + + F+ + QI +S YR + + H Sbjct: 17 GCDRLHIGYEKQLQHKQEEIEKRFKGFKGLEIRQIIKSPKDQMYRHKVQLPFGHRKIGKK 76 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLE-----------PLLRAKL 104 L + +++ + + + + R E LLR + Sbjct: 77 SVLTLGLHNKENTFIIDQKECRIQDEDLTTVAAAIRHWARNENLEPYHEKKGSGLLRHIV 136 Query: 105 FQIDYLTSQSDQAIVTLIYH----RLLDD---------AWRECAIR-LRDALHARKYQIQ 150 + T + IVT + L D ++E + + L + Sbjct: 137 LRKANATQEILVGIVTNESEIPGRKKLTDRLYSYIQQFLYKENSKADVVGILQNVNRKNT 196 Query: 151 LIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ 210 + K R +V E++ L ++ ++F Q N ++ +L Sbjct: 197 KVVLGEKEVTWYGRHFVKEKIG----KLDFQIGLSTFFQVNPFQIENLYNLILE-DLPEN 251 Query: 211 GDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270 +++ YCG G SL +A +V+ +E S+ +A AN + NV ++ + Sbjct: 252 KCVVDAYCGIGTISLYIASKSKKVIGLEENSSSIRSAIGASKANGIENVHFIKGKVLDTL 311 Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSL 328 +A E + +DPPR GLD T ++ ILY+SCNP++L Sbjct: 312 RAALNE--------------NSDVVVLDPPREGLDAETKSILLNSKVNQILYVSCNPETL 357 Query: 329 CRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 RD L+ + E++ D FP+T H+E + + Sbjct: 358 LRDAIELTKSFKYEKITPVDLFPHTSHLESVSVFTK 393 >gi|269302671|gb|ACZ32771.1| RNA methyltransferase family protein [Chlamydophila pneumoniae LPCoLN] Length = 401 Score = 214 bits (544), Expect = 3e-53, Method: Composition-based stats. Identities = 79/396 (19%), Positives = 146/396 (36%), Gaps = 44/396 (11%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN---LQIFRSEPIHYRMRAEFHIW--HDGD 56 + Y L +K + L Q+ + I S + R + EF + ++G+ Sbjct: 15 GCSFPQSNYSDSLKKKEELLHQLFAPLVPSDMIAPIIPCSPSLRGRNKMEFSFFQTYEGE 74 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLL--------RAKLFQID 108 + + K+ + + + ++ P L + L + Sbjct: 75 KSLGFISSTKPKKGIPVTTCLLIHEQTMDILKLTREWWDKHPELMAYFPPKNKGSLCTLT 134 Query: 109 YLTSQSDQ--AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANK--------- 157 T Q ++ C ++ L + I I K Sbjct: 135 VRTGSPQQNFMVILTTSGTPEYRVNEACIDEWKEILLSSSLNIASIYWEEKVAARGISTY 194 Query: 158 --TKICLDRDYVDERLTVAGRT--LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD- 212 TK+ + ++L++ + SF QP ++E + Sbjct: 195 YETKLLYGAPSIQQKLSLPSDDNSASFSLRPRSFFQPQITQAAKIIETAKEFINPEGSET 254 Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 LL+LYCG G ++L+ + V+ VEI +V +A+ NI AN+ + V + E +A Sbjct: 255 LLDLYCGAGTIGIMLSPYVKNVIGVEIIPDAVASAQENIKANNKEDCVEVYL---EDAKA 311 Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDS-LC 329 + E + D I +DPPR G+ + + P I+YISCNP + Sbjct: 312 FCKRNENCKAPD---------VIVIDPPRCGMQSKVLKYILRIESPKIVYISCNPKTQFQ 362 Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 ++S + I+++ DQFPY+ H+E +LL R+ Sbjct: 363 ECADLISGGYRIKKMQPIDQFPYSTHLENIILLERE 398 >gi|331005378|ref|ZP_08328762.1| RNA methyltransferase, TrmA family [gamma proteobacterium IMCC1989] gi|330420832|gb|EGG95114.1| RNA methyltransferase, TrmA family [gamma proteobacterium IMCC1989] Length = 493 Score = 214 bits (544), Expect = 3e-53, Method: Composition-based stats. Identities = 85/402 (21%), Positives = 154/402 (38%), Gaps = 48/402 (11%) Query: 9 QY---EQQLAEKVDRLRQMMLAFQ--VPN--LQIFRSEPIHYRMRAEFHIWHDGDDLYHI 61 QY E+Q+A K D + + + P+ L + YR R + + + Sbjct: 53 QYMSAEEQVAFKQDAVLSQLSRWSQITPDTLLPVLTDTEYGYRQRVRLAVDYTKTGELLL 112 Query: 62 MFDQ-QTKERMRIDYFMPGSLLINALM---IEMMATIRLEPLLRAKLFQIDY----LTSQ 113 F + ++ + ID M + + L+ + ++ I+ + +L + + Sbjct: 113 GFREVDSRAIVNIDSCMVLNPNLQKLIHPLRQWLSYIKAHVVSHVELVNTTHSAAPASGD 172 Query: 114 SDQAIVTLIYH-RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVD---- 168 +A+ ++ H RLL A R + + L ++ K + D + ++ Sbjct: 173 GTEAVGIVVRHTRLLASADRLQLQQCMSTFKKAGLTVNLWFQSQKKGVLEDSNNIEVDPR 232 Query: 169 -ERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLV 226 E + L++R F Q N IN M+E +A + +++LYCG GNFSL Sbjct: 233 LEYVLPLASPLLFRFHPQDFIQSNPSINQKMVEQAIALLAPQSHEIVMDLYCGIGNFSLP 292 Query: 227 LARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS--------------------- 265 LA H VLAVE + A N N +NNV + Sbjct: 293 LALHAKHVLAVEGVEAMTIRAADNAHCNGINNVTFITQDLSQPKLLRASVSAYCQKQDAF 352 Query: 266 ---SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP-HILYI 321 ++ TQ++ + + + +DPPR+G + + P I+Y+ Sbjct: 353 QSAAQPITQSITSTAQVDSSTKKPAKQGVIDALLLDPPRAGAKTICENIAELLPQRIVYV 412 Query: 322 SCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLL 362 SC+ + RD +L + + L + D FP T H+E Sbjct: 413 SCDSSTFARDAGLLVDNGYRLSTLGIMDMFPQTSHVEIMASF 454 >gi|152977878|ref|YP_001343507.1| 23S rRNA 5-methyluridine methyltransferase [Actinobacillus succinogenes 130Z] gi|150839601|gb|ABR73572.1| RNA methyltransferase, TrmA family [Actinobacillus succinogenes 130Z] Length = 439 Score = 214 bits (544), Expect = 3e-53, Method: Composition-based stats. Identities = 84/360 (23%), Positives = 143/360 (39%), Gaps = 32/360 (8%) Query: 13 QLAEKVDRLRQMMLAFQVPNLQIFR---SEPIHYRMRAEFHIWHDGDDLYHIMF--DQQT 67 Q K L Q + Q +++ EP YR RA + DG M + + Sbjct: 104 QRNAKQQALFQRLQKLQ-KDIEFMPMMTGEPWQYRRRARLSLLFDGKTRQLEMGFRGKGS 162 Query: 68 KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLL 127 + + +D +N L+ + A + A L ++ + + + A++ + L+ Sbjct: 163 AQIVAVDRCEVLEPALNNLLPNLTA-LFARFSQPASLGHVELVAADNGVAVLLRVTQNLV 221 Query: 128 DDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSF 187 + L A Y + L + N++ L + + + L + F Sbjct: 222 ES----DRTLLLGF--AESYGVNLFVQDNQSIRLLHGEPPYYEI----QGLRLQFDIRDF 271 Query: 188 TQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246 Q NA +N M+ D +L+L+CG GNF+L ++R + +E V Sbjct: 272 IQVNADLNRKMVATASDWLALKPTDRVLDLFCGMGNFTLPISRLVKSAVGIEGVSAMVTK 331 Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306 A N NH NV+ + + D + F I +DPPRSG Sbjct: 332 ATKNAEQNHCENVEFYQTDLD------------SSFVDKPWANRPFDKILLDPPRSGAAF 379 Query: 307 ATVGMVQAYP-HILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 A ++ P ILY+SCNP +L RD +L + + R+A+ D FP+T H+E L + Sbjct: 380 ALSALIGLQPEKILYVSCNPATLIRDAENLLRAGYRLRRVAMIDMFPHTGHLESISLFEK 439 >gi|195377591|ref|XP_002047572.1| GJ13518 [Drosophila virilis] gi|194154730|gb|EDW69914.1| GJ13518 [Drosophila virilis] Length = 603 Score = 214 bits (544), Expect = 3e-53, Method: Composition-based stats. Identities = 82/419 (19%), Positives = 155/419 (36%), Gaps = 60/419 (14%) Query: 3 GTLLIDQYEQQLAEKVDRLRQMMLAF----------QVPNLQIFR-----SEPI--HYRM 45 L YE+QL +K + + ++ + P+L F+ P YR Sbjct: 159 CPLAEMPYEKQLEQKTEEMATLLRKYTQELRRLNADAKPHLDKFQFKGVLPSPTVDGYRN 218 Query: 46 RAEFHIWHDGDDLYHIMFDQQT--------KERMRIDYFMPGSLLINALMIEMMATIRLE 97 + EF + + D + F + E ++ + + +++ + + Sbjct: 219 KNEFTVGKNSDGEIVVGFRLGSYSDGSVEVAEVQQLPHLPAQAKWAAQSFQQLVRQSKFQ 278 Query: 98 PLL------RAKLFQIDYLTSQSDQAIVTLIYHRLLDD-AWRECAIRLRDALHARK---- 146 P + + T+ + +V IY L + +E LR + Sbjct: 279 PFNPVGNVGHFRQLMVRSSTATGELMLVAGIYSSNLSETEQQELQTELRTFYEQPEQNNT 338 Query: 147 -------YQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML 199 YQ A + + +T + L +R +F Q N + Sbjct: 339 HKCTSLYYQDVKHREAGQMVNPVTHLSGSTHITDTIQGLQFRVSPLAFFQINTAGANVLY 398 Query: 200 EWVLA-ATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN 258 + + A +L++ CG G +L A+H +VL VEI +++ A YN N + N Sbjct: 399 QQAIDLAAPSRDTTMLDICCGTGTIALAFAKHCKQVLGVEIVPDAIKDAEYNAQENDIKN 458 Query: 259 VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ---AY 315 K ++ +F ++M RE + + + VDPPR+GL + ++ ++ A Sbjct: 459 CKFFAGNADDFIKSMVREALYGQEPGKPVDL----IAVVDPPRAGLHNRSIAAIRSASAI 514 Query: 316 PHILYISCNPDSLCRDLSIL---------STTHTIERLALFDQFPYTRHMECGVLLVRK 365 ++Y+SCNP+S R+ L + D FP+T H E +L R+ Sbjct: 515 NRLVYVSCNPNSAKRNFIELARPESKQYKGEPFYPKTAVAVDMFPHTTHTELVILFERE 573 >gi|269925291|ref|YP_003321914.1| RNA methyltransferase, TrmA family [Thermobaculum terrenum ATCC BAA-798] gi|269788951|gb|ACZ41092.1| RNA methyltransferase, TrmA family [Thermobaculum terrenum ATCC BAA-798] Length = 405 Score = 214 bits (544), Expect = 3e-53, Method: Composition-based stats. Identities = 70/373 (18%), Positives = 137/373 (36%), Gaps = 75/373 (20%) Query: 2 SGTLL-IDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDG 55 G +Y++QL K + ++ I +YR A F G Sbjct: 95 GGCHYQHIRYDRQLEIKRHIVESLLSRIGGFRDIKVLPTIPSPREYYYRNSARFLCGQQG 154 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115 D D ++ +++D IN ++ + +R + + Q D Sbjct: 155 DL---GFTDWRSNSFIKVDTCPIMDEKINEVLQHIQGHGLPGENVRVR------YSRQKD 205 Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175 + ++ W + ++ L T++ L R+ Sbjct: 206 ELVI-----------WPKLSVDLETGQQFH------------TQVLLGRE---------- 232 Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRV 234 +R SF Q N +++ L + ++G +++ YCG G F+ +A + Sbjct: 233 ----FRVSATSFFQVNTLQAENLIRIALDELEPLEGKTVVDAYCGVGTFTRFIAERAELT 288 Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294 + +E + + RYN+ ++ R E+E RL + Sbjct: 289 IGIEESPSATADFRYNMQGLKAKLIE------------GRAEKELGRLPN------NIDR 330 Query: 295 IFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTT--HTIERLALFDQF 350 + +DPPR+G + + + A I+Y+SC+P +L RDL +L +T + ++++ D F Sbjct: 331 LLLDPPRTGCEPEALETILELAPEKIVYVSCDPATLARDLKVLCSTGAYRLKKVQPVDMF 390 Query: 351 PYTRHMECGVLLV 363 P T H+E L Sbjct: 391 PQTFHIETIASLE 403 >gi|227874094|ref|ZP_03992301.1| TrmA family RNA methyltransferase [Oribacterium sinus F0268] gi|227840071|gb|EEJ50494.1| TrmA family RNA methyltransferase [Oribacterium sinus F0268] Length = 400 Score = 213 bits (543), Expect = 3e-53, Method: Composition-based stats. Identities = 74/382 (19%), Positives = 133/382 (34%), Gaps = 68/382 (17%) Query: 45 MRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGS---LLINALMIEMMATIRL----- 96 + E DL + + + + S LI + E ++ Sbjct: 28 NKIE--AKEKSSDLSMGFYGFHSHRIIETKDCLINSAENPLILNCIKEWAREYKISGYEE 85 Query: 97 ---EPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDAL-HARKYQIQ-- 150 + LLR + + T + ++ L+ + +E L+ L A + +Q Sbjct: 86 ETGKGLLRHIFLRKGFSTG---EILLCLVLNGKSLPHGKELWENLQGLLLSAEEGDLQRE 142 Query: 151 ---------------------------------------LIGRANKTKICLDRDYVDERL 171 +T +D +++++ Sbjct: 143 EDVSCGMDAQSQEDVYCGKNGTVQGSIVGLCVNINEGSGNAILGRETLCLYGKDSIEDKI 202 Query: 172 TVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNFSLVLARH 230 L + SF Q N + L A + + + YCG G SL LA+ Sbjct: 203 G----ELSFSISVPSFYQVNPVQTEKIYGKALEYAALTGEETVWDCYCGIGTISLFLAQK 258 Query: 231 FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE--REFNRLKDIDIH 288 +V +EI ++E A+ N N + N + +++E E RE + Sbjct: 259 AKQVYGLEIVPEAIENAKKNAEKNGLQNAEFFVGAAEEVLPKWVEEQKRELSAKGADCGI 318 Query: 289 SYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STTHTIERLA 345 + +DPPR G D+A + V + I+Y+SC+P SL RD+ L + +E+ Sbjct: 319 GDMVDVVSLDPPRKGCDEACLSAVLELSPKRIVYVSCDPGSLARDIKYLGEGGYVLEKWV 378 Query: 346 LFDQFPYTRHMECGVLLVRKPS 367 D FP T H+E LL ++ S Sbjct: 379 GIDNFPRTGHVETIALLQKEES 400 >gi|73541780|ref|YP_296300.1| 23S rRNA 5-methyluridine methyltransferase [Ralstonia eutropha JMP134] gi|91207810|sp|Q46ZH7|RUMA_CUPPJ RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName: Full=23S rRNA(M-5-U1939)-methyltransferase gi|72119193|gb|AAZ61456.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Ralstonia eutropha JMP134] Length = 463 Score = 213 bits (543), Expect = 3e-53, Method: Composition-based stats. Identities = 77/384 (20%), Positives = 136/384 (35%), Gaps = 39/384 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWH--DG 55 ++ QLA K L + ++ YR RA + + Sbjct: 99 GCSMQHLDSRAQLAIKQRVLEDNLWHLSKVRPEVMFRPIAGPDWGYRYRARLTVRYVAKK 158 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115 + ++++ + I+A+++ + + +R ++ QI+ Sbjct: 159 GGVLVGFHERKSSYVADMTSCEILPPHISAMLVPLRELVTGL-SIRDRMPQIELAVGHEV 217 Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC---LDRDYVDERLT 172 A+V R+L+ LR Q L + T + LDR+ L Sbjct: 218 TALVL----RILEPLTDADKDLLRAFADQHNVQFWLQPKGPDTVVPFYPLDRELA-YTLP 272 Query: 173 VAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHF 231 G + ++ FTQ N IN ++ L Q LL+L+CG GNF+L LA Sbjct: 273 EFGIRMPFK--PTDFTQVNHHINRVLIGRALRLLDVQPQDRLLDLFCGIGNFTLPLATQG 330 Query: 232 DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291 V+ +E ++ A N N + EF F + R Sbjct: 331 RSVMGIEGSEALTTRALANAGYNGL-------AEKTEFAC----RNLFEVTAEDIAALGR 379 Query: 292 FKTIFVDPPRSGLDDATVGMVQ--------AYPHILYISCNPDSLCRDLSIL--STTHTI 341 F +DPPR G + + I+Y+SC+P +L RD +L + + Sbjct: 380 FDRWLIDPPREGALAVCKALGELSQQGSDVLPQRIVYVSCSPATLARDAGLLVHEAGYRL 439 Query: 342 ERLALFDQFPYTRHMECGVLLVRK 365 + + FP+T H+E + R+ Sbjct: 440 AGAGVVNMFPHTSHVESIAVFERR 463 >gi|332160480|ref|YP_004297057.1| 23S rRNA 5-methyluridine methyltransferase [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325664710|gb|ADZ41354.1| 23S rRNA 5-methyluridine methyltransferase [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 425 Score = 213 bits (543), Expect = 3e-53, Method: Composition-based stats. Identities = 76/365 (20%), Positives = 145/365 (39%), Gaps = 32/365 (8%) Query: 12 QQLAE--KVDRLRQMMLAFQVPNLQ---IFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66 QL + K D L+++++ Q + YR RA + + M +Q Sbjct: 79 SQLQQMSKADSLQRLIMREAGACPQLDPVICGSEYGYRRRARLGLLYQPKQHRLQMGFRQ 138 Query: 67 T--KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 T + + I + + L++ + + +R +L ++ + + + +V Sbjct: 139 TESHDLVCIKHCPVLRPELERLLLPLYQCLSGLQAVR-RLGHVELVLADNGPLMVL---- 193 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 R LD L D + + L G ++ + + E L Sbjct: 194 RHLDTLKEVDRAALIDFAKREQVAVYLAGDSDNVEKLIG-----EEPYYQIEGLRLAFHP 248 Query: 185 NSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 F Q N +N M+ +A +L+L+CG GNF+L LA+ V+ VE Sbjct: 249 RDFIQVNDTVNQQMVAQAIAWLDVQPDERVLDLFCGMGNFTLPLAKLAREVVGVEGVAAL 308 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 V +YN N + NV + + + + + F + +DP R+G Sbjct: 309 VANGQYNALNNALPNVSFFHENLE------------SDISRQPWATQGFDKVLLDPARAG 356 Query: 304 LDDATVGMVQAYP-HILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVL 361 +V+ P ++Y+SCNP +L RD +L+ + + ++ + D FP+T H+E L Sbjct: 357 AAGVMSHIVKLAPKRVVYVSCNPTTLARDSQVLLAAGYRLAQVRMLDMFPHTGHLESMAL 416 Query: 362 LVRKP 366 +++P Sbjct: 417 FMQEP 421 >gi|253998673|ref|YP_003050736.1| 23S rRNA 5-methyluridine methyltransferase [Methylovorus sp. SIP3-4] gi|253985352|gb|ACT50209.1| RNA methyltransferase, TrmA family [Methylovorus sp. SIP3-4] Length = 457 Score = 213 bits (543), Expect = 3e-53, Method: Composition-based stats. Identities = 79/392 (20%), Positives = 139/392 (35%), Gaps = 48/392 (12%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSE----PIHYRMRAEFHIWH--DG 55 L + Q+A K L + + YR +A + H Sbjct: 80 GCALQHLDFSGQVAAKQRLLEGNLWHIGKVKAETMLPPIYGPAWGYRHKARLRVRHVPKK 139 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115 + ++ + +D ++AL++ + I +R +L QI+ + Sbjct: 140 GGVLVGFNEKASSFVAHMDSCEVLPPHVSALIVPLQHMIAQL-SVRERLPQIEVAVGEQA 198 Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC---LDRDYVDERLT 172 +V R+L+ E L+ QI + T + L+ + L Sbjct: 199 TVLVL----RILEALRPEDGPILKAFADTHGVQIWTQTKGPDTVMPFYPLNGPALTYSLP 254 Query: 173 VAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHF 231 T ++ E FTQ N IN ML + D + + +CG GNF+L +AR Sbjct: 255 EFQLTYPFKPTE--FTQVNPHINRVMLRRAMQLLGAQPQDRIADFFCGLGNFTLPIARSG 312 Query: 232 DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291 VL +E + V A + + N + + Q RE + ++ + S Sbjct: 313 ATVLGMEGSAALVARAVESASLNGLAD------------QVEYREADLFKMTPEALQSLG 360 Query: 292 -FKTIFVDPPRSGLDDATVGM----------------VQAYPHILYISCNPDSLCRDLSI 334 F +DPPR G + + V I+Y+SCNP +L RD + Sbjct: 361 YFDKWLIDPPRDGALELIKSLADVGRGEDGAMPVAPKVAGPERIVYVSCNPATLARDAGV 420 Query: 335 LS--TTHTIERLALFDQFPYTRHMECGVLLVR 364 L + + + + FP+T H+E L + Sbjct: 421 LVNLKGYRLLAAGVINMFPHTSHVESIALFEK 452 >gi|170289500|ref|YP_001739738.1| RNA methyltransferase [Thermotoga sp. RQ2] gi|170177003|gb|ACB10055.1| RNA methyltransferase, TrmA family [Thermotoga sp. RQ2] Length = 439 Score = 213 bits (543), Expect = 3e-53, Method: Composition-based stats. Identities = 79/385 (20%), Positives = 145/385 (37%), Gaps = 46/385 (11%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEP----IHYRMRAEFHIWHDGDD 57 + +YE QL K + L + + +++ EP HYR + EFH Sbjct: 76 GCHWMDVKYETQLRYKKEVLIDLFERSNLK-VEVEDVEPSDLVFHYRTKMEFHF----QG 130 Query: 58 LYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLFQ 106 + + + + I + L I + + +L+ + + Sbjct: 131 RKLGLKKRNSDFVIDIKDCEVAPEGTGEILNTVKEAVQVLNIPVYNWETRKGVLKHLVIR 190 Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD- 165 + T Q VT + W +R + + I + + + + Sbjct: 191 YAFSTDQFMVIFVT----KTESFPWGRDLVRAVLKRFPKIHSIIHVMNSKDSVVLRGPYR 246 Query: 166 --YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGN 222 Y + + ++ +F Q N I +++ V ++ L+LY G G Sbjct: 247 TLYGEGVIVEEFDWERFQIPPTAFFQSNYSITSKLIDHVYRELALQGNEVVLDLYAGIGT 306 Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282 FS+ + RV++VE ++ +V+A + N N N++ V +F + Sbjct: 307 FSVRTSFSAARVISVESSRVAVKAGKANANINSRRNIEYVEQDVLDFLKNY--------- 357 Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSIL-STTH 339 S R I +DPPRSG + + + I+Y+SC P +L RDL +L + Sbjct: 358 ------SGRADRIILDPPRSGAGPEAMKEIARLSPERIVYVSCEPSTLVRDLKVLVENGY 411 Query: 340 TIERLALFDQFPYTRHMECGVLLVR 364 +I + FD FP T H+E V LV+ Sbjct: 412 SIVGVKPFDMFPQTYHVETAVTLVK 436 >gi|116330374|ref|YP_800092.1| tRNA (uracil-5-)-methyltransferase [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116124063|gb|ABJ75334.1| tRNA (uracil-5-)-methyltransferase [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 393 Score = 213 bits (543), Expect = 3e-53, Method: Composition-based stats. Identities = 80/396 (20%), Positives = 137/396 (34%), Gaps = 52/396 (13%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN--LQIFRSEPIHYRMRAEFHIWHD--GDD 57 L YE+QL K + + + + FQ I + YR + + H G Sbjct: 17 GCDRLHISYEKQLQHKQEGVEKRFVGFQELEIRPIIKSPKEQMYRHKVQLPFGHRKIGKK 76 Query: 58 LYHIMFDQQTKERMRIDY--FMPGSLLINALMIEMMATIRLE-----------PLLRAKL 104 + + ID + + + R E LLR + Sbjct: 77 TVLTLGLHNKENVYIIDQKECRIQDADLTTVAAAIRHWARTENVIPYNEKNGSGLLRHIV 136 Query: 105 FQIDYLTSQSDQAIVTLIYH----RLLDDAWRECAIRL----------RDALHARKYQIQ 150 + + + IVT + L D + L + Sbjct: 137 LRKANASQEILVGIVTNATEIPGRKKLADRLHSYIQQFLCNEKSKAEVVGILQNVNQRNT 196 Query: 151 LIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ 210 + K R +V E++ L ++ ++F Q N ++ + VL Sbjct: 197 KVVLGEKETTWYGRHFVKEKIG----DLDFQIGLSTFFQVNPFQIKNLYDLVLQE-LPSD 251 Query: 211 GDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270 ++++ YCG G SL +A +V+ +E S+ +A AN + NV + Sbjct: 252 SNVVDAYCGIGTISLYVASKSKKVVGLEENPNSIRSAVGAAKANGIVNVAFTKGKVLRTL 311 Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSL 328 QA E + + +DPPR GLD T ++ ILY+SCNP++L Sbjct: 312 QAALNE--------------KSDVVILDPPREGLDPETKKILLNSKIHKILYVSCNPETL 357 Query: 329 CRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 RD L+ ++ D FP+T H+E + R Sbjct: 358 LRDAVALTKVFKYTKMTPVDLFPHTSHLESVSVFTR 393 >gi|145636398|ref|ZP_01792067.1| 23S rRNA (uracil-5-)-methyltransferase [Haemophilus influenzae PittHH] gi|145270563|gb|EDK10497.1| 23S rRNA (uracil-5-)-methyltransferase [Haemophilus influenzae PittHH] Length = 354 Score = 213 bits (543), Expect = 3e-53, Method: Composition-based stats. Identities = 88/364 (24%), Positives = 146/364 (40%), Gaps = 32/364 (8%) Query: 11 EQQLAEKVDRLRQMMLAFQVPNLQIFRS----EPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66 E Q K L + + Q F+ + YR R +W + + M +Q Sbjct: 14 EMQRKAKESALFKRLSKLQS-EPISFQPMICGDAWAYRRRVRLSLWFNPNTKQIDMGFRQ 72 Query: 67 --TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 T + + + IN L+ ++ A + + +L I+ + + + A++ L Y Sbjct: 73 KNTNDLIPVQSCEVAEPAINYLLPKLTALLEKFSAPK-QLGHIELVAADNGVAML-LRYT 130 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + L + L K + L +I D Y + L + Sbjct: 131 KNLAE---IDRTLLLKFAEQEKLMLFLQSDEGIEQIYGDAPYYQFSDGIK---LHFDI-- 182 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 F Q N+ +N M+ L + Q D +L+L+CG GNF+L A+ + +E Sbjct: 183 RDFIQVNSALNERMVNTALDWLELSQQDCVLDLFCGMGNFTLPFAKRVKSAVGIEGVFEM 242 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 V+ A N A N + N++ + Q+ + N+ F I +DPPRSG Sbjct: 243 VQKAAQNAARNQIKNIEFFQAD---LDQSFVEQPWANQ---------SFNKILLDPPRSG 290 Query: 304 LDDATVGMVQAY-PHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVL 361 A + + ILY+SCNP +L RD IL + IE+ A+ D FP+T H+E L Sbjct: 291 AAFALNALCELKAEKILYVSCNPATLVRDAEILCDFGYKIEKSAVIDMFPHTGHLESITL 350 Query: 362 LVRK 365 K Sbjct: 351 FTTK 354 >gi|281413076|ref|YP_003347155.1| RNA methyltransferase, TrmA family [Thermotoga naphthophila RKU-10] gi|281374179|gb|ADA67741.1| RNA methyltransferase, TrmA family [Thermotoga naphthophila RKU-10] Length = 439 Score = 213 bits (543), Expect = 3e-53, Method: Composition-based stats. Identities = 81/385 (21%), Positives = 148/385 (38%), Gaps = 46/385 (11%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEP----IHYRMRAEFHIWHDGDD 57 + +YE QL K + L + + +++ EP HYR + EFH Sbjct: 76 GCHWMDVKYETQLRYKKEVLIDLFERSNLK-VEVEDVEPSDLVFHYRTKMEFHF----QG 130 Query: 58 LYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLFQ 106 + + + + I + L + + + +L+ + + Sbjct: 131 RKLGLKKRNSDFVIDIKDCEVAPEGTGEILNTVKEAVQVLNVPVYNWETRKGVLKHLVIR 190 Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD- 165 + T Q VT + W +R + + I + + + + Sbjct: 191 YAFSTDQFMVIFVT----KTESFPWGRDLVRAVLKRFPKIHSIIHVMNSKDSVVLRGPYR 246 Query: 166 --YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGN 222 Y + + ++ +F Q N I +++ V ++ L+LY G G Sbjct: 247 TLYGEGVIVEEFDWERFQIPPTAFFQSNYSITSKLIDHVYRELALQGNEVVLDLYAGIGT 306 Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282 FS+ + RV++VE ++ +V+A + N N N++ V +F + Sbjct: 307 FSVRTSFSAARVISVESSRVAVKAGKANANINSRRNIEYVEQDVLDFLKNY--------- 357 Query: 283 KDIDIHSYRFKTIFVDPPRSGLD-DATVGMVQAYP-HILYISCNPDSLCRDLSIL-STTH 339 S R I +DPPRSG +A +V+ P I+Y+SC P +L RDL +L + Sbjct: 358 ------SGRADRIILDPPRSGAGPEAMKEIVRLSPERIVYVSCEPSTLVRDLKVLVENGY 411 Query: 340 TIERLALFDQFPYTRHMECGVLLVR 364 +I + FD FP T H+E V LV+ Sbjct: 412 SIVGVKPFDMFPQTYHVETAVTLVK 436 >gi|294649349|ref|ZP_06726781.1| 23S rRNA (uracil-5-)-methyltransferase [Acinetobacter haemolyticus ATCC 19194] gi|292824789|gb|EFF83560.1| 23S rRNA (uracil-5-)-methyltransferase [Acinetobacter haemolyticus ATCC 19194] Length = 463 Score = 213 bits (543), Expect = 3e-53, Method: Composition-based stats. Identities = 84/383 (21%), Positives = 152/383 (39%), Gaps = 33/383 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWHDGDD 57 +L ++Q+ K + L+ + F + RS I YR RA + + Sbjct: 98 GCSLQHIHPDEQILLKQNVLQSHLQHFAGLQPEQWLTPIRSNKIDYRRRARIGVRYIPRQ 157 Query: 58 LYHIMFDQQTK--ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115 +M ++ I ++ + E+ + +A + ++ + Sbjct: 158 DRLVMGFREHHSNHLTTIHQCKVLDQTLSDAIPELRKCLEGLMA-KAHIGHVELAMGDHE 216 Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175 A++ R L++ LR R++Q+ L R + +D RL Sbjct: 217 VALLI----RHLEELNVSDVNHLRQFALQRQWQLYLQPRGADSLHRVDDVQAPMRLHYHL 272 Query: 176 RTL--IYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFD 232 + FTQ N+ +N M++ + +G+ +L+L+CG GNFSL LAR Sbjct: 273 DDFDIRFAFSPLDFTQVNSAVNARMIQLACELLQLKEGERVLDLFCGLGNFSLPLARCVG 332 Query: 233 ---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHS 289 +V+ VE + V A N AN +N S++ T+ Sbjct: 333 DTGQVIGVEASDEMVLRATENAKANSLNQAIFF---SQDLTKDFS---------HHPWAK 380 Query: 290 YRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILST-THTIERLAL 346 F + +DPPRSG + + V + I+Y+SCNP +L RD +L+ + +++ A+ Sbjct: 381 QGFDALLIDPPRSGAFE-VMQYVPNFGANRIVYVSCNPSTLARDAGVLAQHGYQLKKAAV 439 Query: 347 FDQFPYTRHMECGVLLVRKPSGW 369 D F +T H+E L + S Sbjct: 440 LDMFTHTEHVESIALFEKNESDK 462 >gi|254369699|ref|ZP_04985709.1| 23S rRNA (Uracil-5-)-methyltransferase [Francisella tularensis subsp. holarctica FSC022] gi|157122658|gb|EDO66787.1| 23S rRNA (Uracil-5-)-methyltransferase [Francisella tularensis subsp. holarctica FSC022] Length = 449 Score = 213 bits (543), Expect = 3e-53, Method: Composition-based stats. Identities = 75/380 (19%), Positives = 152/380 (40%), Gaps = 35/380 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQV---PN---LQIFRSEPIHYRMRAEFHIWH-- 53 +L + Q+ K L + P + S YR +A + + Sbjct: 87 GCSLQHMSTDAQIEHKQQTLINQLKYIGNGVEPENILPPLRTSNTEGYRNKARLGVRYVS 146 Query: 54 DGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQ 113 + ++ + ID + + L+ + E+ + I + + + Q++ Sbjct: 147 KKGKILVGFRERNGRFLADIDKCIVLNPLVGDKITEISSFIETLSIYQH-IAQLEIAIDD 205 Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKT--KICLDRDYVDERL 171 + A++ R L+ E +LR Y I L + T ++ D ++L Sbjct: 206 TRPAMIV----RHLEPFTNEDLEKLRSFAQENNYWIYLQSKGPDTIFRLYPQGDVEPKKL 261 Query: 172 TVAGRTLI---YRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVL 227 + I + N FTQ N IN M++ + + D +++L+CG GNF+L + Sbjct: 262 SYQPAAGIDIGFE--PNDFTQVNNDINKKMIKRAIELLDISENDSIIDLFCGLGNFTLPI 319 Query: 228 ARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDI 287 ++H V+ VE V+ A+ N++ NV + ++ + FN Sbjct: 320 SQHAKTVIGVEGEPTMVKRAKETADNNNITNVNFY---AANLFESFEDKEWFN------- 369 Query: 288 HSYRFKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSIL--STTHTIERL 344 ++ + + +DPPR+G + + + I+Y+SC+ +L RD IL + + + Sbjct: 370 -NFEYNKMLLDPPRAGAQEVCNNIEKFNVKRIVYVSCDTAALARDAGILVNTKDYKLISA 428 Query: 345 ALFDQFPYTRHMECGVLLVR 364 + D FP+T H+E + + Sbjct: 429 GVMDMFPHTMHVESIAVFEK 448 >gi|289548942|ref|YP_003473930.1| RNA methyltransferase, TrmA family [Thermocrinis albus DSM 14484] gi|289182559|gb|ADC89803.1| RNA methyltransferase, TrmA family [Thermocrinis albus DSM 14484] Length = 424 Score = 213 bits (543), Expect = 3e-53, Method: Composition-based stats. Identities = 82/375 (21%), Positives = 153/375 (40%), Gaps = 43/375 (11%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVP-----NLQIFRSEPIHYRMRAEFHIWHDGD 56 + Y QL K D L + + HYR+R +F + + Sbjct: 78 GCQIQHMDYSAQLEAKNDILLDNLKRIGKLQSVNLGPPVVSGSEFHYRLRVQFKV----E 133 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD- 115 D F T + + I+ + IN ++ + R LR +I L S + Sbjct: 134 DGKVGFFAWGTHQLVDIEECLLVHRDINQIIPTLRELSRQVKDLR----EIHVLYSPWEK 189 Query: 116 QAIVTLIYHRLLDDAWRECAIRLRD-ALHARKYQIQLIGRANKTKI---CLDRDYVDERL 171 + ++ L+ +D ++ +L++ + + + T + L RD+ Sbjct: 190 EFLLKLVTVSPID---KDRLRKLKELYIPPQVVGVGNYTMLRDTPVRRYFLGRDFT---- 242 Query: 172 TVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF 231 + YR +SF Q N + + VL + ++ +E++CG G FSL L++ Sbjct: 243 FIQVGPYRYRVSADSFLQVNYTLYEEFVNAVLEKVQRVR-KAVEIHCGIGFFSLPLSQRA 301 Query: 232 DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291 + + A ++ + +V A+Y+ N V+ V V + + + + E Sbjct: 302 EFLYASDVNQVAVRDAQYSARINSVDKVVFVHERAVDTLKNLAGE--------------V 347 Query: 292 FKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILS-TTHTIERLALFD 348 + VDPPR GL + ++ +I+Y+SCNP +L RDL +LS ++++ + L D Sbjct: 348 IDLLVVDPPREGLSEGETQLILSNKPKNIVYVSCNPSTLARDLKVLSKGGYSLKVIRLVD 407 Query: 349 QFPYTRHMECGVLLV 363 FP T H+E L Sbjct: 408 NFPQTYHVESVSFLE 422 >gi|318607054|emb|CBY28552.1| 23s rRNA (Uracil-5-)-methyltransferase RumA [Yersinia enterocolitica subsp. palearctica Y11] Length = 425 Score = 213 bits (543), Expect = 3e-53, Method: Composition-based stats. Identities = 75/365 (20%), Positives = 144/365 (39%), Gaps = 32/365 (8%) Query: 12 QQLAE--KVDRLRQMMLAFQVPNLQ---IFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66 QL + K D L+++++ Q + YR RA + + M +Q Sbjct: 79 SQLQQMSKADSLQRLIMREAGACPQLDPVICGSEYGYRRRARLGLLYQPKQHRLQMGFRQ 138 Query: 67 T--KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 T + + I + + L++ + + +R +L ++ + + + +V Sbjct: 139 TESHDLVCIKHCPVLRPELERLLLPLYQCLSGLQAVR-RLGHVELVLADNGPLMVL---- 193 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 R LD L D + + G ++ + + E L Sbjct: 194 RHLDTLKEVDRAALIDFAKREQVAVYPAGDSDNVEKLIG-----EEPYYQIEGLRLAFHP 248 Query: 185 NSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 F Q N +N M+ +A +L+L+CG GNF+L LA+ V+ VE Sbjct: 249 RDFIQVNDTVNQQMVAQAIAWLDVQPDERVLDLFCGMGNFTLPLAKLAREVVGVEGVAAL 308 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 V +YN N + NV + + + + + F + +DP R+G Sbjct: 309 VANGQYNALNNALPNVSFFHENLE------------SDISRQPWATQGFDKVLLDPARAG 356 Query: 304 LDDATVGMVQAYP-HILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVL 361 +V+ P ++Y+SCNP +L RD +L+ + + ++ + D FP+T H+E L Sbjct: 357 AAGVMSHIVKLAPKRVVYVSCNPTTLARDSQVLLAAGYRLAQVRMLDMFPHTGHLESMAL 416 Query: 362 LVRKP 366 +++P Sbjct: 417 FMQEP 421 >gi|262369859|ref|ZP_06063186.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Acinetobacter johnsonii SH046] gi|262314898|gb|EEY95938.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Acinetobacter johnsonii SH046] Length = 462 Score = 213 bits (543), Expect = 3e-53, Method: Composition-based stats. Identities = 85/381 (22%), Positives = 153/381 (40%), Gaps = 40/381 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIH-----YRMRAEFHIWH--D 54 + ++Q+ K D L+ + F + + P+ YR +A + + Sbjct: 98 GCNMQHIHPDEQIRLKQDVLKSHLQHFAGIQPEQWL-PPLRSLREDYRRKARIGVRYLPH 156 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGSLL---INALMIEMMATIRLEPLLRAKLFQIDYLT 111 D L ++QT + ID + I L + + +A + I+ Sbjct: 157 KDQLVVGFRERQTNKLTSIDRCLVLDQAFGSITRLKQLLQSLTA-----KAAIGHIELAM 211 Query: 112 SQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERL 171 D A+ +L E RL+ R +Q+ L + +D ++ + RL Sbjct: 212 GDCDIALTVRHTEKLNT----EDVNRLKQFALDRGWQLYLQAAGPDSLKRMDDEHAEMRL 267 Query: 172 T--VAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLA 228 + + + + FTQ N+ IN M++ QG+ +L+L+CG GNFSL LA Sbjct: 268 HYRLNDFDVAFGFNPHDFTQVNSTINPQMVKLACDLLDLKQGERVLDLFCGLGNFSLPLA 327 Query: 229 RHFDR---VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285 R V+ VE ++ V+ N N + +K S++ T+ N+ Sbjct: 328 RCVGETGQVVGVEGSEEMVQRGAENAERNALGQLKFF---SQDLTKDFSHHSWANQ---- 380 Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSIL-STTHTIER 343 F + +DPPR+G ++ M I+Y+SCNP +L RD +L + + + Sbjct: 381 -----GFDALLIDPPRAGAEEIMHYMPNFGAKRIVYVSCNPATLARDAGLLVQQGYRLVK 435 Query: 344 LALFDQFPYTRHMECGVLLVR 364 + D F +T H+E L + Sbjct: 436 AGVMDMFTHTGHVESIALFEK 456 >gi|260582573|ref|ZP_05850363.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Haemophilus influenzae NT127] gi|260094384|gb|EEW78282.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Haemophilus influenzae NT127] Length = 438 Score = 213 bits (543), Expect = 3e-53, Method: Composition-based stats. Identities = 88/364 (24%), Positives = 145/364 (39%), Gaps = 32/364 (8%) Query: 11 EQQLAEKVDRLRQMMLAFQVPNLQIFRS----EPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66 E Q K L + + Q F+ + YR R +W + M +Q Sbjct: 98 EMQRKAKESALFKRLSKLQS-EPISFQPMICGDAWAYRRRVRLSLWFNPSTKQIDMGFRQ 156 Query: 67 --TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 T + + + IN L+ ++ A + + +L I+ + + + A++ L Y Sbjct: 157 KNTNDLIPVQSCEVAEPAINYLLPKLTALLEKFSAPK-QLGHIELVAADNGVAML-LRYT 214 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + L + L K + L +I D Y + L + Sbjct: 215 KNLAE---IDRTLLLKFAEQEKLMLFLQSDEGIEQIYGDAPYYQFSDGIK---LHFDI-- 266 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 F Q N+ +N M+ L + Q D +L+L+CG GNF+L LA+ + +E Sbjct: 267 RDFIQVNSALNEPMVNTALDWLELSQQDCVLDLFCGMGNFTLPLAKRVKSAVGIEGVFEM 326 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 V+ A N N + N++ + Q+ + N+ F I +DPPRSG Sbjct: 327 VQKAAQNAERNQIKNIEFFQAD---LDQSFVEQPWANQ---------SFNKILLDPPRSG 374 Query: 304 LDDATVGMVQAY-PHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVL 361 A + + ILY+SCNP +L RD IL + IE+ A+ D FP+T H+E L Sbjct: 375 AAFALNALCELKAEKILYVSCNPATLVRDAEILCDFGYKIEKSAVIDMFPHTGHLESITL 434 Query: 362 LVRK 365 K Sbjct: 435 FTTK 438 >gi|257066487|ref|YP_003152743.1| RNA methyltransferase, TrmA family [Anaerococcus prevotii DSM 20548] gi|256798367|gb|ACV29022.1| RNA methyltransferase, TrmA family [Anaerococcus prevotii DSM 20548] Length = 457 Score = 213 bits (543), Expect = 3e-53, Method: Composition-based stats. Identities = 82/400 (20%), Positives = 150/400 (37%), Gaps = 57/400 (14%) Query: 2 SGTLLID-QYEQQLAEKVDRLRQMMLAFQV---PNLQIFRSE-PIHYRMRAE--FHIWHD 54 G YE +L KVD ++ + + +++I +S YR + E F Sbjct: 80 GGCAYQKLAYETELMLKVDMIKNLFKDNSIDYSGDIKINQSPKTKAYRNKMEYTFGDSKK 139 Query: 55 GDDLYHIMFDQQTK-ERMRIDYFMPGSLLINALMIEMMATIR-----------LEPLLRA 102 G DL + Q E + N + + A R E LLR Sbjct: 140 GGDLVLGLHRQNRFYEIVDTTNCNIIDGDFNTIRESVQAYFREKKTDFYHKRTREGLLRH 199 Query: 103 KLFQIDYLTSQSDQAIVT------------LIYHRLLDDAWRECAIRLRDALHARKYQIQ 150 + + + T + +VT L ++LL + ++ H Sbjct: 200 LIIRKAHRTGEIMVILVTTSDESFDSLRINLFLNKLLS---IDLVGKIVSVYHVINDSPA 256 Query: 151 LIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGI 209 K + ++++ E + L + SF QPN + + A Sbjct: 257 DAVIVEKLNLIYGKEFIKEEML----GLTFNISPFSFFQPNIYTAEKLYQKAFDLANINQ 312 Query: 210 QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269 D+L+LY G G + V+A+ +EI + +++ A N N ++N+ + Sbjct: 313 SMDVLDLYSGTGTITQVMAQRARTATGIEIVEEAIDKAWENAKINEIDNINFLCGDV--- 369 Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDS 327 L++I+ ++ I +DPPR+G+ ++ + +YISCNP + Sbjct: 370 ------------LEEIEKVGDKYDVIILDPPRAGISPKSLEKILKIDTEKFIYISCNPKT 417 Query: 328 LCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVLLVRKP 366 +L ++ I+ ++DQFP +RH+E LL RK Sbjct: 418 QVENLKEFINQGFEIKDYEIYDQFPKSRHLEAIALLTRKK 457 >gi|51245295|ref|YP_065179.1| RNA-methyltransferase [Desulfotalea psychrophila LSv54] gi|50876332|emb|CAG36172.1| related to RNA-methyltransferase [Desulfotalea psychrophila LSv54] Length = 444 Score = 213 bits (543), Expect = 3e-53, Method: Composition-based stats. Identities = 85/384 (22%), Positives = 144/384 (37%), Gaps = 40/384 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL---------QIFRSEPIHYRMRAEFHIW 52 L E QL K +++ + P L I + YR R HI Sbjct: 75 GCNLQHATAELQLEIKEAIVKESLTRSGKPELAKASALIQAPIASPQDFFYRQRIRLHI- 133 Query: 53 HDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTS 112 + Q+ + + I + S IN ++ + + + L Sbjct: 134 --DEYGRMGFRQHQSHDIIAIKKCLLASPQINEVLTALEEHEEHGEICQLASQLELILNP 191 Query: 113 QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARK----------YQIQLIGRANKTKICL 162 ++Q + + R A A RL + + + Q + K+ L Sbjct: 192 ATEQVQLVYLLKRKSRPADTNRAKRLGEKIASVDCIYFIGENFPLQSAYCKTPEEGKV-L 250 Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNG 221 DY + L ++ + N F Q N NV M+E VLA A + +L+L+CG G Sbjct: 251 SLDYKPQALAGKKISMQWEV--NGFCQVNIKQNVQMIETVLAFADIRDEESVLDLFCGMG 308 Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281 NFS+ LA V E ++ +A+ N N ++N + + Sbjct: 309 NFSIPLACQAKAVTGFEGQGSAIRSAKKNALNNGLDNCSFYQ------------KPVHKA 356 Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY-PHILYISCNPDSLCRDLSILST-TH 339 ++ + + +DPPR G + + + ++YISC+P +L RDL+ LS Sbjct: 357 CAELIADKRVYDCVIIDPPRQGAPELAGQLAKLCQKRLIYISCDPATLTRDLAELSKQGF 416 Query: 340 TIERLALFDQFPYTRHMECGVLLV 363 I+++ D FP T H+E VLL Sbjct: 417 QIKKIQPIDMFPQTYHIENVVLLE 440 >gi|139437219|ref|ZP_01771379.1| Hypothetical protein COLAER_00358 [Collinsella aerofaciens ATCC 25986] gi|133776866|gb|EBA40686.1| Hypothetical protein COLAER_00358 [Collinsella aerofaciens ATCC 25986] Length = 442 Score = 213 bits (543), Expect = 3e-53, Method: Composition-based stats. Identities = 79/370 (21%), Positives = 133/370 (35%), Gaps = 34/370 (9%) Query: 12 QQLAEKVDRLRQMMLAFQVPNLQIFRS---------EPIHYRMRAEFHIWHDGDDLYHIM 62 QLA K LR + + + YR + E + M Sbjct: 89 AQLAAKEQNLRSTLERIGKFAPEQVDELVQPICHTKDDWGYRNKIELEPTVVNGRVRLGM 148 Query: 63 FDQQTKERMRIDYFMPGSLLINALMIEMMATI-RLEPLLRAKLFQIDYLTSQSDQAIVTL 121 + + +D + ++ + L L ++ S+ +A+ Sbjct: 149 HGVDPSKIVAVDSCPLFDKRFPKALKSVVGALNYLSGSHNLGLERVGIRASRRTKALEVA 208 Query: 122 IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC--LDRDYVDERLTVAGRTLI 179 ++ + + L DA H + K + ++ + T Sbjct: 209 LWTPTGSFPRSQVSRVLADAAHPTSIVRVMSKGEKKARRVSKVEMLAGEGSWTENIAEGQ 268 Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLARHFDRVLAVE 238 R SF Q N ++E V+ A + +L ++LYCG G F+L LAR D V AVE Sbjct: 269 MRLSAPSFFQVNTKGAEILIELVMEALDPQEDELAVDLYCGAGTFTLPLARRCDFVAAVE 328 Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298 P+V R N+ N ++NV ++ + D D + VD Sbjct: 329 AYGPAVRDLRRNLEINKLDNVDVIGGDA------------VREFPDQDA-----DVLVVD 371 Query: 299 PPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTR 354 PPR+GL + ++ + + Y+SC+P +L RDL T + ++ D FP T Sbjct: 372 PPRAGLAPEAIDLIASTSAHDVAYVSCDPATLARDLKRFVEEGTFSPVKITPVDLFPQTF 431 Query: 355 HMECGVLLVR 364 H E V L R Sbjct: 432 HCETVVHLKR 441 >gi|223042058|ref|ZP_03612234.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Actinobacillus minor 202] gi|223017133|gb|EEF15569.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Actinobacillus minor 202] Length = 440 Score = 213 bits (542), Expect = 4e-53, Method: Composition-based stats. Identities = 79/370 (21%), Positives = 146/370 (39%), Gaps = 29/370 (7%) Query: 2 SGTLL-IDQYEQQLAEKVDRLRQMMLAFQVPNL---QIFRSEPIHYRMRAEFHIWHDGDD 57 G + E Q K L Q + Q + + + YR R + + + Sbjct: 91 GGCQMQHVSLEVQRETKQQALFQRLQKLQSSPIALEPMLVGQAKGYRRRTKLSVALQNGN 150 Query: 58 LYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQA 117 + Q + + + ++ + + ++ + + L + L I+ + + + A Sbjct: 151 VVMGFRMQNSNQIIPLEQCEILTPA-LSALLLPLQNLLLNWTQKKHLGHIELVEADNTVA 209 Query: 118 IVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRT 177 ++ R + + + +L K + L+ A + + E+ Sbjct: 210 MLL----RYMGELAQSDLAQLLAFAKETKLSLFLMNDAQQIEHICG-----EKPYYKLND 260 Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLA 236 L F Q NA N M+ L + D +L+L+CG GNF+L LA+ V+ Sbjct: 261 LTLHFSIRDFIQVNAEQNQKMVAQALNWLALEKSDRVLDLFCGMGNFTLPLAQQAGYVVG 320 Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296 VE + V AR N N ++NV + + E R D + F + Sbjct: 321 VEGVEEMVVTARQNAVENQLDNVAFYQTNLDE------------RFVDQPWATEAFNKVL 368 Query: 297 VDPPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTR 354 +DP R G A + + P I+Y+SCNP +L RD L + +++ ++A+ D FP+T Sbjct: 369 LDPARHGAYFALDHLCELNPERIVYVSCNPATLVRDAEKLIKSGYSLAKVAVIDMFPHTG 428 Query: 355 HMECGVLLVR 364 H+E L V+ Sbjct: 429 HLESISLFVK 438 >gi|302335620|ref|YP_003800827.1| 23S rRNA m(5)U-1939 methyltransferase [Olsenella uli DSM 7084] gi|301319460|gb|ADK67947.1| 23S rRNA m(5)U-1939 methyltransferase [Olsenella uli DSM 7084] Length = 446 Score = 213 bits (542), Expect = 4e-53, Method: Composition-based stats. Identities = 81/371 (21%), Positives = 126/371 (33%), Gaps = 34/371 (9%) Query: 9 QYEQQLAEKVDRLRQMMLAFQ---------VPNLQIFRSEPIHYRMRAEFHIWHDGDDLY 59 Y QLA K + + + +P YR + E G Sbjct: 90 SYSVQLAAKRANVVDALARIGRLPAKEAERLVGPCAVAGDPWGYRNKVELAFARRGGRAL 149 Query: 60 HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAK-LFQIDYLTSQSDQAI 118 M + +++D + + + A + +I S+ + Sbjct: 150 VGMHGAGGQGVIKVDRCPLLDKRYERMTKSVAGAVSYLANSHALDIERIGIRASRRTGEV 209 Query: 119 VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD--RDYVDERLTVAGR 176 ++ + A L DA L K + R Sbjct: 210 EVALWTEPGPFPRAQVAKVLGDACRTTSVVRVLTKGPQKARRVTGVERLAGRGHWGELVG 269 Query: 177 TLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVL 235 + SF Q N ++ VL + + D ++LYCG G F+L LAR V Sbjct: 270 SERMSVSAPSFFQVNTRGAERLVSLVLEGLRPTEDDGAMDLYCGAGTFTLPLARRCAWVS 329 Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295 AVE P+V R+N+ ++NV + +REF + I Sbjct: 330 AVESYGPAVRDLRHNLDVARLDNVDAQGGDA---------DREFPQ--------SDADVI 372 Query: 296 FVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILST--THTIERLALFDQFP 351 VDPPR+GL A V + A I Y+SC+P +L RDL+ IE + D FP Sbjct: 373 VVDPPRAGLGGAVVDKLSAQDARAIAYVSCDPATLARDLARFRERAAFAIESVVPVDLFP 432 Query: 352 YTRHMECGVLL 362 T H+E +L Sbjct: 433 QTFHVETVTIL 443 >gi|269213835|ref|ZP_06158206.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Neisseria cinerea ATCC 14685] gi|269145156|gb|EEZ71574.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Neisseria cinerea ATCC 14685] Length = 461 Score = 213 bits (542), Expect = 4e-53, Method: Composition-based stats. Identities = 76/373 (20%), Positives = 143/373 (38%), Gaps = 25/373 (6%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSE----PIHYRMRAEFHIWHDG-D 56 +L Q+A K + + + + HYR RA F + D Sbjct: 89 GCSLQHISPTAQVAFKQRIMEEQLERIGKVKPKQILPPIYGHVWHYRDRARFSVSLDKSC 148 Query: 57 DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116 L ++T + + I M ++ + + ++ + ++ S+ Sbjct: 149 RLKLGFQAKKTNDVVGISSCMLIPKPVSDKLPAIRELLQDLAEGGSIARFAEFYRG-SEI 207 Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL-DRDYV-DERLTVA 174 ++ + + L + D+ + +QI L ++ +D + L Sbjct: 208 TVLNIAFKSKLRQNDESRIRQWFDSELSDDWQIWLQIEGKVSEPFYPQKDTILKYTLPEF 267 Query: 175 GRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDR 233 G + +R FTQ N N M+ + QG+ + +L+CG GNFSL +A+ Sbjct: 268 GIEMPFR--PGDFTQINTDTNRLMVSRAIKMLDIRQGERVADLFCGLGNFSLPIAKSGAS 325 Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293 V+ VE A+ V AR N N +F A F+ ++ +F Sbjct: 326 VVGVEGAENLVGRARQNARLNG-------CGGQTDFIAA----NLFDCTENTVASWGKFD 374 Query: 294 TIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSIL-STTHTIERLALFDQF 350 + +DPPRSG + + Y I+Y+SCNP +L RD +L + + ++ + + F Sbjct: 375 KMLIDPPRSGAYEVVRSLKPPYLPKKIVYVSCNPSTLARDAGVLVEKGYILGQVGIMNMF 434 Query: 351 PYTRHMECGVLLV 363 +T H+E + Sbjct: 435 AHTSHVESIAVFE 447 >gi|145631421|ref|ZP_01787191.1| molybdenum cofactor biosynthesis protein [Haemophilus influenzae R3021] gi|144982958|gb|EDJ90467.1| molybdenum cofactor biosynthesis protein [Haemophilus influenzae R3021] Length = 438 Score = 213 bits (542), Expect = 4e-53, Method: Composition-based stats. Identities = 89/364 (24%), Positives = 144/364 (39%), Gaps = 32/364 (8%) Query: 11 EQQLAEKVDRLRQMMLAFQVPNLQIFRS----EPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66 E Q K L + + Q F+ YR R +W + M +Q Sbjct: 98 EMQRKAKESALFKRLSKLQS-EPISFQPMICGNAWAYRRRVRLSLWFNPSTKQIDMGFRQ 156 Query: 67 --TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 T + + + IN L+ ++ A + + +L I+ + + + A++ L Y Sbjct: 157 KNTNDLIPVQSCEVAEPAINYLLPKLTALLEKFSAPK-QLGHIELVAADNGVAML-LRYT 214 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + L + L K + L +I D Y + L + Sbjct: 215 KNLAE---IDRTLLLKFAEQEKLMLFLQSDEGIEQIYGDAPYYQFSDGIK---LHFDI-- 266 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 F Q N +N M+ L + Q D +L+L+CG GNF+L LA+ + +E Sbjct: 267 RDFIQVNRALNEPMVNTALDWLELSQQDCVLDLFCGMGNFTLPLAKRVKSAVGIEGVFEM 326 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 V+ A N A N + N++ + Q+ + N+ F I +DPPRSG Sbjct: 327 VQKAAQNAARNQIKNIEFFQAD---LDQSFVEQPWANQ---------SFNKILLDPPRSG 374 Query: 304 LDDATVGMVQAY-PHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVL 361 A + + ILY+SCNP +L RD IL + IE+ A+ D FP+T H+E L Sbjct: 375 AAFALNALCELKAEKILYVSCNPATLVRDAEILCDFGYKIEKSAVIDMFPHTGHLESITL 434 Query: 362 LVRK 365 K Sbjct: 435 FTTK 438 >gi|86158782|ref|YP_465567.1| (Uracil-5)-methyltransferase [Anaeromyxobacter dehalogenans 2CP-C] gi|85775293|gb|ABC82130.1| 23S rRNA m(5)U-1939 methyltransferase [Anaeromyxobacter dehalogenans 2CP-C] Length = 438 Score = 213 bits (542), Expect = 5e-53, Method: Composition-based stats. Identities = 87/374 (23%), Positives = 138/374 (36%), Gaps = 30/374 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-------VPNLQIFRSEPIHYRMRAEFHIWHD 54 L Y QLA K L + + + P+ YR RA+FH HD Sbjct: 84 GCEWLHVAYPVQLAAKERALHEALRRIGKLEPGSYPARPIVPSPSPLRYRARAKFH--HD 141 Query: 55 GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQS 114 + F +++ E +R+ ++AL + + L + +++ + Sbjct: 142 RAAGRLVFFRRRSHEPVRLRECHLLEPGLDALREAVGPALAA-ARLSPREVALEWSEAAG 200 Query: 115 DQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDE--RLT 172 A L L + R L L+ +A + D V R Sbjct: 201 RGAAWLL-----LPEVTSPVRTRAEALLREVPALQGLVLQAEGGQPVTAGDPVLRHARAP 255 Query: 173 VAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD 232 R + F Q N G N ++E L D+LELYCG GNF+ L+ Sbjct: 256 GRPEAGTQRSRPDVFQQANRGANARLVETALDLLAPEGEDVLELYCGAGNFTGPLSDRAR 315 Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292 V A+E+ P+++ AR A NV+ + +A RE + RF Sbjct: 316 SVSAIEVQGPALDLAR---ADLGGRNVRFFAGDALALARAFGRESGPG--------ARRF 364 Query: 293 KTIFVDPPRSGLDDATVGMV-QAYPHILYISCNPDSLCRDL-SILSTTHTIERLALFDQF 350 +DPPR G + P +Y+SC+P + RDL + + + + + D F Sbjct: 365 GAALLDPPREGARGIGPALRDLGVPRAVYVSCDPATFARDLRACVEAGYRVAAVVPVDMF 424 Query: 351 PYTRHMECGVLLVR 364 P T H+E LL R Sbjct: 425 PQTHHVEGVALLER 438 >gi|302879059|ref|YP_003847623.1| RNA methyltransferase, TrmA family [Gallionella capsiferriformans ES-2] gi|302581848|gb|ADL55859.1| RNA methyltransferase, TrmA family [Gallionella capsiferriformans ES-2] Length = 435 Score = 212 bits (541), Expect = 5e-53, Method: Composition-based stats. Identities = 77/363 (21%), Positives = 141/363 (38%), Gaps = 27/363 (7%) Query: 13 QLAEKVDRLRQMMLAFQVPNLQIFRS----EPIHYRMRAEFHIWH--DGDDLYHIMFDQQ 66 Q+A K L + + + YR RA + + + +++ Sbjct: 88 QVAVKQRILEDSLARIGKVKPESILPAIYGQAWGYRERARISAKYVIKKEKMLVGFHEKR 147 Query: 67 TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL 126 + + + +L IE +AT+ +R KL QI+ + +V R+ Sbjct: 148 SSFVADMQSCEILEPKVASL-IEPLATLLAGLSIRDKLPQIEVAVGEHVYVLVL----RI 202 Query: 127 LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR-DYVDERLTVAGRTLIYRQIEN 185 + E LR Q L + +T + D + ++ ++ Sbjct: 203 MAPLSCEDEAALRAFADQHVVQFWLQTKGPETVVPFYPLDAPELTYSLPEFGVVMPFAPG 262 Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244 FTQ N+ +N M+ + +G+ +++ +CG GNF+L +AR +V +E + V Sbjct: 263 EFTQVNSQLNRVMISRAMRLLNPQKGERIVDFFCGLGNFTLPIARSGAQVTGIEGSDALV 322 Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304 + A N A+NH++ A F + RF +DPPR G Sbjct: 323 KRAAQNAASNHLS-----------VNTAFSARNLFEMDEAALAALGRFDKWLIDPPRDGA 371 Query: 305 DDATVGMVQ--AYPHILYISCNPDSLCRDLSILS-TTHTIERLALFDQFPYTRHMECGVL 361 + + A I+Y+SCNP +L RD + L + ++ + + FP T H+E + Sbjct: 372 MELVKSITPEIAPDLIVYVSCNPATLARDAAELVLRGYVLKSAGVMNMFPQTSHVESIAV 431 Query: 362 LVR 364 VR Sbjct: 432 FVR 434 >gi|224826668|ref|ZP_03699769.1| RNA methyltransferase, TrmA family [Lutiella nitroferrum 2002] gi|224601269|gb|EEG07451.1| RNA methyltransferase, TrmA family [Lutiella nitroferrum 2002] Length = 516 Score = 212 bits (541), Expect = 5e-53, Method: Composition-based stats. Identities = 76/379 (20%), Positives = 141/379 (37%), Gaps = 31/379 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEF--HIWHDG 55 ++ ++ Q+A K L + + + YR RA + Sbjct: 78 GCSMQHVEFSAQVAIKQRVLEDSLKHIGKVSAERMLTPIAGPAWGYRHRARLSARLVEKK 137 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115 + ++++ + I+AL++ + I +R ++ QI+ + Sbjct: 138 GGVLVGFHEKRSSYIAEMSECHILPPHISALIVPLREMIYTL-SIRDRMPQIEVAVGEKL 196 Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC-----LDRDYVDER 170 +V + A R D +Q+ + C LD + Sbjct: 197 DILV-FRNMDAISAADETILRRFSDTHSQPGRPLQIWLQPKGPDTCYPLYPLDAPKLTYT 255 Query: 171 LTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLAR 229 L + Y E FTQ N IN M+ L G+ + +++CG GNF+L +AR Sbjct: 256 LRDFSVEMPYYPTE--FTQVNPEINNVMVTRALRLLDPQPGERIADMFCGIGNFTLPIAR 313 Query: 230 HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHS 289 V +E ++ V+ A N + N + + M+ F+ ++ Sbjct: 314 SGADVHGMEGSEALVKRAVENASHNRLEHKVSYEMA-----------NLFDVTEESFAAL 362 Query: 290 YRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL--STTHTIERLA 345 +F + VDPPR G + A I+Y+SCNP +L RD IL + +T++ Sbjct: 363 GKFDKMLVDPPRDGAVQLLKALTDDTAPQRIVYVSCNPATLARDAGILVNTKGYTLKAAG 422 Query: 346 LFDQFPYTRHMECGVLLVR 364 + + FP+T H+E + Sbjct: 423 IINMFPHTAHVESVAWFEK 441 >gi|168334686|ref|ZP_02692826.1| RNA methyltransferase, TrmA family protein [Epulopiscium sp. 'N.t. morphotype B'] Length = 454 Score = 212 bits (541), Expect = 5e-53, Method: Composition-based stats. Identities = 77/386 (19%), Positives = 139/386 (36%), Gaps = 45/386 (11%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPI-HYRMRAEFHIW---HDGDD 57 L YE+QL K+ + Q++ +I S YR + E+ DG Sbjct: 81 GCALQNLPYEKQLERKLRWVNQIL---NFEVAEILGSPKWFQYRNKMEYTFGDTVKDGPL 137 Query: 58 LYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMA--TIRLEPLLRAKLFQ------IDY 109 + + T + + +D NA++ + + P + Q + Sbjct: 138 ALGLHKKRTTFDIVTVDDCKIVDDGFNAILRATLXFFAVXNXPYYKKVSHQGFLKFLVVR 197 Query: 110 LTSQSDQAIVTLIYHRLLD-------DAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162 + + +V ++ + +A + ++ LH + + ++ Sbjct: 198 RSETTGXFLVNIVTSSQIAYDFTAFVEAIKNTGFKIAGVLHTISDSPSDAIKPDSVELLY 257 Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNG 221 +Y+ E + L ++ SF Q N + LA ++ + +LY G G Sbjct: 258 GLNYIYEEIL----GLKFKISPFSFFQTNTKGAEVLYANALALLSDLEDKTVFDLYSGTG 313 Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281 + ++A +V+ +EI +V AA+ N N + N + + Sbjct: 314 TIAQIMALKAKKVVGIEIVAEAVAAAKENAKLNGLENCEFIAGDV--------------- 358 Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSIL-STT 338 L ID I VDPPR G+ + + + ILYISC SL RDL Sbjct: 359 LTQIDNADVGPDVIVVDPPRDGIHRKALEKIINFGVAEILYISCKATSLARDLVAFAEGG 418 Query: 339 HTIERLALFDQFPYTRHMECGVLLVR 364 + + + D F T H+E VLL R Sbjct: 419 YHVAQSLCVDMFAQTYHVETVVLLKR 444 >gi|312796086|ref|YP_004029008.1| 23S rRNA m(5)U 1939 methyltransferase [Burkholderia rhizoxinica HKI 454] gi|312167861|emb|CBW74864.1| 23S rRNA m(5)U 1939 methyltransferase (EC 2.1.1.-) [Burkholderia rhizoxinica HKI 454] Length = 507 Score = 212 bits (541), Expect = 5e-53, Method: Composition-based stats. Identities = 73/381 (19%), Positives = 134/381 (35%), Gaps = 34/381 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-IFRS---EPIHYRMRAEFHIWH--DG 55 ++ Q+A K L + + I+R YR RA + + Sbjct: 142 GCSMQHLDTRAQIAVKQRVLEDNLSHLAKLRAEQIYRPIGGPSWGYRYRARLTVRNVVKK 201 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115 + ++++ + ++AL++ + + +R ++ QI+ + Sbjct: 202 GGVLVGFHEKKSSYVADMTRCEVLPPHVSALLVPLRRLVESL-SIRDRMPQIELAIGDAL 260 Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175 A+V R+L+ + LR Q L + + V+ T+ Sbjct: 261 TALVL----RVLEPLTEQDEALLRAFADQHGVQFWLQPKGPDSVTPFYPVDVELAYTLPE 316 Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRV 234 + FTQ N IN ++ + + D +L+L+CG GNF+L LAR V Sbjct: 317 FDIRMPFKPTDFTQVNHQINRVLVGRAVRLLAPARTDRVLDLFCGLGNFTLPLARRAREV 376 Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294 + +E + + A+ N N + E + F RF Sbjct: 377 VGIEGSDALTQRAQANARVNGL-----------EARTSFAMRNLFEVGAADLRALGRFDK 425 Query: 295 IFVDPPRSGLDDATVGM---------VQAYPHILYISCNPDSLCRDLSIL--STTHTIER 343 +DPPR G + I+Y+SCNP +L RD +L + + Sbjct: 426 FLIDPPREGALAVAKALGELAQTGDAACLPGRIVYVSCNPATLARDAGLLVHEAGYRLVG 485 Query: 344 LALFDQFPYTRHMECGVLLVR 364 + + FP+T H+E R Sbjct: 486 AGVVNMFPHTSHVESVACFER 506 >gi|195927220|pdb|2JJQ|A Chain A, The Crystal Structure Of Pyrococcus Abyssi Trna (Uracil-54, C5)-Methyltransferase In Complex With S-Adenosyl-L- Homocysteine Length = 425 Score = 212 bits (541), Expect = 5e-53, Method: Composition-based stats. Identities = 83/378 (21%), Positives = 150/378 (39%), Gaps = 57/378 (15%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEP-IHYRMRAEFHIWHDGDDLYH 60 TL Y+ QL K +L++++ F +++ S +R R + I DG Sbjct: 89 GCTLQHLNYDYQLEFKRKKLKRIL-GF---EVEVVPSPKIFGHRNRIDLAITKDG----- 139 Query: 61 IMFDQQTK--ERMRIDYFMPGSLLINALMIEMMATIRLEPL-----------LRAKLFQI 107 I F ++ K + + ID + + I E + LR + + Sbjct: 140 IGFRERGKWWKIVDIDECPVFGKTSREAIERLKEFIEEEKISVWNIKKDEGFLRYMVLRE 199 Query: 108 DYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYV 167 T + VT + + + + + + + ++++ Sbjct: 200 GKFTEEVMVNFVTKEGNLPDPTNYFDFDSIYW----SVNRSKSDVSYGDIERF-WGKEFI 254 Query: 168 DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVL 227 ERL + Y NSF Q N+ V+++ V +G + +L++Y G G F + L Sbjct: 255 RERL----DDVDYLIHPNSFFQTNSYQAVNLVRKVSELVEGEK--ILDMYSGVGTFGIYL 308 Query: 228 ARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDI 287 A+ V + + ++E AR N+ N+V+ EF D ++ Sbjct: 309 AKRGFNVKGFDSNEFAIEMARRNVEINNVD-------------------AEFEVASDREV 349 Query: 288 HSYRFKTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLSILSTTHTIERLA 345 F T+ VDPPR+GL V + I+Y+SCNP++ RD+ +L + I+ + Sbjct: 350 SVKGFDTVIVDPPRAGLHPRLVKRLNREKPGVIVYVSCNPETFARDVKMLD--YRIDEIV 407 Query: 346 LFDQFPYTRHMECGVLLV 363 D FP+T H+E LV Sbjct: 408 ALDMFPHTPHVELVAKLV 425 >gi|260913270|ref|ZP_05919752.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Pasteurella dagmatis ATCC 43325] gi|260632857|gb|EEX51026.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Pasteurella dagmatis ATCC 43325] Length = 436 Score = 212 bits (541), Expect = 5e-53, Method: Composition-based stats. Identities = 79/359 (22%), Positives = 145/359 (40%), Gaps = 30/359 (8%) Query: 13 QLAEKVDRLRQMMLAFQVPN--LQIFRSEPIHYRMRAEFH--IWHDGDDLYHIMFDQQTK 68 Q A K L Q + Q + + E HYR R L ++++ Sbjct: 100 QRATKQKALLQRLSKLQPDVQLMPMLTGEAWHYRRRVRLSMLFNLKTKKLDIGFRQKKSQ 159 Query: 69 ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLD 128 + + I + ++ ++ ++ A + + +L I+ + + D I L+ H + Sbjct: 160 QIVNIQHCNILEPKLSQILPKLTA-LFTQWSTPKQLGHIELV--KVDNGIAMLLRH--IG 214 Query: 129 DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFT 188 + L + K + L + ++ + + L + F Sbjct: 215 NLTDNDRTLLLEFALQEKLMLFLQQQDEIIQLSGEAPF------YQIGDLKLQFDIRDFI 268 Query: 189 QPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA 247 Q NA +N+ M+ L ++L+L+CG GNF+L L+R V+ +E + V+ A Sbjct: 269 QVNADLNLKMIATALDWLELNSTDNVLDLFCGMGNFTLPLSRKVKSVIGIEGVQEMVQKA 328 Query: 248 RYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307 + N N NV+ + + + R D F I +DPPR+G A Sbjct: 329 QKNAEQNQCANVQFYQTNLDQ------------RFSDQAWAKLPFDKILLDPPRTGAAFA 376 Query: 308 TVGMVQ-AYPHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364 + + ILY+SCNP +L RD IL+ + + ++A+ D FP+T H+E L + Sbjct: 377 LNALCELGAQKILYVSCNPATLIRDTEILADFGYRLSKVAMIDMFPHTGHLESISLFEK 435 >gi|213971908|ref|ZP_03400008.1| RNA methyltransferase, TrmA family [Pseudomonas syringae pv. tomato T1] gi|301384478|ref|ZP_07232896.1| 23S rRNA 5-methyluridine methyltransferase [Pseudomonas syringae pv. tomato Max13] gi|302060512|ref|ZP_07252053.1| 23S rRNA 5-methyluridine methyltransferase [Pseudomonas syringae pv. tomato K40] gi|302132004|ref|ZP_07257994.1| 23S rRNA 5-methyluridine methyltransferase [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213923333|gb|EEB56928.1| RNA methyltransferase, TrmA family [Pseudomonas syringae pv. tomato T1] Length = 451 Score = 212 bits (541), Expect = 5e-53, Method: Composition-based stats. Identities = 85/371 (22%), Positives = 140/371 (37%), Gaps = 30/371 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWHDGDD 57 ++ +E+QLA K L + +L + YR RA + D Sbjct: 99 GCSVQHVPHEEQLALKQRMLAEQLLRVANVVPDEWAAPLSGAELAYRRRARVAVRWDAKA 158 Query: 58 LY--HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115 ++ + I+ + +M ++ A I L ++ + S Sbjct: 159 KRLDVGFRAAASQHIVSIEECPVLVQALQPIMSQLPA-ILKSFSKPQVLGHVELFSGSS- 216 Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175 V L + L +A L+ Q+ L G D + RL Sbjct: 217 -TAVLLRHTAPLAEA---DLATLQAFCKTHGAQLWLHGEGEPQPASPG-DTLGYRLEPWD 271 Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRV 234 L +R F Q NA +N M+E L + +++L+CG GNF+L LA V Sbjct: 272 LQLAWR--PGDFIQVNAAVNTAMIEQALHWLAPAADERVMDLFCGLGNFALPLASLAKEV 329 Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294 +AVE VE A N +N ++NV+ + + L +D + F Sbjct: 330 VAVEGVATMVERAAVNAMSNDLHNVRFFQADLSQ------------PLTHVDWAAEGFSA 377 Query: 295 IFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPY 352 + +DPPR G + + + +LY+SCNP +L RD L + ++R + D FP Sbjct: 378 VLLDPPRDGAFEVVRQIRKTGAQRLLYVSCNPATLARDTVELVKQGYRLKRAGILDMFPQ 437 Query: 353 TRHMECGVLLV 363 T H+E L Sbjct: 438 TAHVEAMALFE 448 >gi|195496369|ref|XP_002095665.1| GE22531 [Drosophila yakuba] gi|194181766|gb|EDW95377.1| GE22531 [Drosophila yakuba] Length = 615 Score = 212 bits (541), Expect = 5e-53, Method: Composition-based stats. Identities = 78/422 (18%), Positives = 151/422 (35%), Gaps = 64/422 (15%) Query: 3 GTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFR---------------SEPI--HYRM 45 L Y+QQL +K + + ++ + ++ P YR Sbjct: 165 CPLSHIAYDQQLKQKSEEMAALLAKYTQELRKVNPRAKANLDKFQFHGVLPSPTVNGYRN 224 Query: 46 RAEFHIWHDGDD-----LYHIMFDQQTKERMRI---DYFMPGSLLINALMIEMMATIRLE 97 + EF + + + + E + + + +++ + Sbjct: 225 KNEFTVGKNSAGEVVVGFRLGCYSDGSVEVAEVADLPHLPEQAKWAARSFQDLVRRSKFL 284 Query: 98 PL--------LRAKLFQIDYLTSQSDQAIVTLIYHRLL-DDAWRECAIRLRDA------- 141 P R + + T + +V IY L +D E L+ Sbjct: 285 PFNPDGNVGHFRQLMVRCSSATGE--LMLVAGIYSSNLSEDEQVELKQELKSFYEELAKD 342 Query: 142 ----LHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVH 197 + YQ A +T ++ +T + L +R +F Q N Sbjct: 343 APYKCTSLYYQDVKHREAGQTINPVEHISGSTHITDTIQGLQFRISPLAFFQINTEGANV 402 Query: 198 MLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV 256 + + + + +L++ CG G +L A+H +V+ VEI +++ A +N AN + Sbjct: 403 LYQKAIDLVAPTEDTTMLDICCGTGTITLAFAKHCKKVMGVEIVPDAIKDAEFNAEANGI 462 Query: 257 NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--- 313 N K ++ +F ++M RE +++ + VDPPR+GL ++ ++ Sbjct: 463 KNAKFFTGNADDFIKSMVREALYDQEPGKPLDL----IAVVDPPRAGLHHRSIAAIRSAD 518 Query: 314 AYPHILYISCNPDSLCRDLSIL---------STTHTIERLALFDQFPYTRHMECGVLLVR 364 A ++Y+SCNP S R+ L + D FP+T H E +L R Sbjct: 519 AVNRLVYVSCNPHSAKRNFIELARPESKQYKGEPFYPKSAVAVDMFPHTMHTELVILFER 578 Query: 365 KP 366 +P Sbjct: 579 EP 580 >gi|319896666|ref|YP_004134859.1| 23S rRNA (uracil-5-)-methyltransferase ruma [Haemophilus influenzae F3031] gi|317432168|emb|CBY80519.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Haemophilus influenzae F3031] Length = 438 Score = 212 bits (541), Expect = 5e-53, Method: Composition-based stats. Identities = 85/364 (23%), Positives = 152/364 (41%), Gaps = 32/364 (8%) Query: 11 EQQLAEKVDRLRQMMLAFQVPNLQIFRS----EPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66 E Q K L + + Q F+ + YR R +W + + M +Q Sbjct: 98 EMQRKAKESALFKRLSKLQS-EPISFQPMICGDAWAYRRRVRLSLWFNPNTKQIEMGFRQ 156 Query: 67 TK--ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124 + + + IN L+ ++ A + + +L I+ + + + A++ L Y Sbjct: 157 KNANDLIPVQSCEVVEPAINHLLPKLTALLEQFSAPK-QLGHIELVAADNGVAML-LRYT 214 Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184 + L + R ++ A + ++ L ++++ ++++Y D + Sbjct: 215 KKLAEIDRTLLLKF-----AEQEKLMLFLQSDEG---IEQNYGDAPYYQFSDGIKLHFDI 266 Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243 F Q N +N M+ L + Q D +L+L+CG GNF+L LA+ + +E Sbjct: 267 RDFIQVNRVLNERMVNTALDWLELNQQDCVLDLFCGMGNFTLPLAKRVKSAVGIEGVFEM 326 Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 V+ A N N + N++ + Q+ + N+ F I +DPPRSG Sbjct: 327 VQKAAQNAERNQIKNIEFFQAD---LDQSFVEQPWANQ---------SFNKILLDPPRSG 374 Query: 304 LDDATVGMVQAY-PHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVL 361 A + + ILY+SCNP +L RD IL + IE+ A+ D FP+T H+E L Sbjct: 375 AAFALNALCELKAEKILYVSCNPATLVRDAGILCDFGYKIEKSAVIDMFPHTGHLESITL 434 Query: 362 LVRK 365 K Sbjct: 435 FTTK 438 >gi|284929759|ref|YP_003422281.1| 23S rRNA m(5)U-1939 methyltransferase [cyanobacterium UCYN-A] gi|284810203|gb|ADB95900.1| 23S rRNA m(5)U-1939 methyltransferase [cyanobacterium UCYN-A] Length = 448 Score = 212 bits (541), Expect = 5e-53, Method: Composition-based stats. Identities = 70/367 (19%), Positives = 145/367 (39%), Gaps = 45/367 (12%) Query: 11 EQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDG-DDLYHIMFD 64 E QL K +++ Q + + S+ YR +A + + + ++ + Sbjct: 90 EYQLYIKQNKIIQSLQRIGRFKDVFVLPILSSSQIFGYRNKATYPLGYSKFGNVNAGYYQ 149 Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-----------LRAKLFQIDYLTSQ 113 + + + + ++ +N+ + E+ I + LR +I + + Sbjct: 150 RYSHKLINLNQCPIQDSRLNSFLAEIKVDIEKQGWSIYNEKTYQGHLRHLALRIGQNSGE 209 Query: 114 SDQAIVTLIYH----RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDE 169 +++ + + W E L L + + N+T + + ++ E Sbjct: 210 VLLTLISTTGNITKIKEQAKLWLERYPNLVGVLVNKNSEKNNKIFGNQTFSIVGKPFLKE 269 Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLA 228 R + ++ ++F Q NA +L +L + +++ YCG G F+L LA Sbjct: 270 RF----FNIDFKLRPDTFFQVNAQSAETLLHSLLDNLILTGKEKIVDAYCGIGTFTLPLA 325 Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288 + + +EI+ S+E A+ N N++NNV+ + + K+ + Sbjct: 326 KRISHAIGIEISHDSIEQAKANAELNNINNVEFYQGAVKDILPTLN-------------- 371 Query: 289 SYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILS--TTHTIERL 344 + +DPPR G DD+ + ++ P I+YISC P +L RDL + + I + Sbjct: 372 -IFPDIVLLDPPRKGCDDSVIETLREICPPLIIYISCQPSTLARDLKKICYQNLYKILWV 430 Query: 345 ALFDQFP 351 D FP Sbjct: 431 QPVDFFP 437 >gi|317049303|ref|YP_004116951.1| TrmA family RNA methyltransferase [Pantoea sp. At-9b] gi|316950920|gb|ADU70395.1| RNA methyltransferase, TrmA family [Pantoea sp. At-9b] Length = 438 Score = 212 bits (541), Expect = 5e-53, Method: Composition-based stats. Identities = 76/356 (21%), Positives = 143/356 (40%), Gaps = 30/356 (8%) Query: 17 KVDRLRQMMLAFQVPNL---QIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ--TKERM 71 K L +M+ + +I YR RA + M ++ + + + Sbjct: 104 KAQALARMLSRDAPLPVRVDEIISGHAWGYRRRARLGLQWQPKQQRLQMGFRKAASNDLV 163 Query: 72 RIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAW 131 + + + AL++ + + ++ +L ++ + + + +V R LD Sbjct: 164 ELTQCPILAPELEALLLPLHRCLSDLNTVK-RLGHVELVLADNGPLMVL----RHLDALS 218 Query: 132 RECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPN 191 + +L H + L ++ L D R L F Q N Sbjct: 219 ADDRAKLERFSHEHDVMLYLADGSDDL-TALQSDTPFYR----SFDLQLTFSPQDFIQVN 273 Query: 192 AGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN 250 G+N M+ + D +L+L+CG GNF+L + + + + VE V A YN Sbjct: 274 DGVNQQMVAKAIDWLDLQPEDRVLDLFCGMGNFTLPIGKFVENAVGVEGVAALVRQAAYN 333 Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310 N++ NV+ + + +E + + F + +DP R+G Sbjct: 334 ADLNNLKNVRFFQHNLEE------------DVARQPWAAQGFNKVLLDPARAGAAGVMSH 381 Query: 311 MVQAYP-HILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 +V+ P ++Y+SCNP +L RD +LS + +ER+A+ D FP+T H+E VL + Sbjct: 382 IVKLAPQRVVYVSCNPTTLARDSQTLLSAGYHLERVAMLDMFPHTSHLESMVLFSK 437 >gi|149922893|ref|ZP_01911315.1| RNA methyltransferase, TrmA family protein [Plesiocystis pacifica SIR-1] gi|149816281|gb|EDM75786.1| RNA methyltransferase, TrmA family protein [Plesiocystis pacifica SIR-1] Length = 466 Score = 212 bits (541), Expect = 5e-53, Method: Composition-based stats. Identities = 94/390 (24%), Positives = 152/390 (38%), Gaps = 42/390 (10%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVP---NLQIFRSEPIHYRMRAEFHI-WHDGDD 57 +L+ ++Q+A K L + L+ R+EP YR RA W G D Sbjct: 91 GCSLMHLDPDEQVALKQRWLASDFEGHGLAPERWLEPLRAEPWAYRRRARLGAKWVAGKD 150 Query: 58 LYHIMFDQQTKERMRIDYFMPGSLLIN-----ALMIEMMATIRLEPLLRAKLFQIDYLTS 112 + F +Q K + + G ++ AL+ ++ I L K+ Q++ + Sbjct: 151 KVVVGFREQDKRFI---ANLEGCEVLAGRHGGALIPKLSELIAGL-SLATKIPQVEVSVA 206 Query: 113 QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL--DRDYVDER 170 VT + R+L+ E RLR A ++ L + T +R + Sbjct: 207 DDTDGAVTALVFRVLEPPTDEDRERLRAFAAAEGLRVFLQSKGLDTVALFADERGQTEGE 266 Query: 171 LTVAGRTLIY---------RQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGN 220 R L Y R F Q NA IN M+ + + +L+L+CG Sbjct: 267 GFEDARELSYALPEFELDLRFRPTDFVQVNAAINRSMIARAVELLALEPEHRVLDLFCGL 326 Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280 GNFSL LAR V VE V A N N ++N + E + E Sbjct: 327 GNFSLALARRAGAVFGVEGDAGLVARAAANAERNGLSNARF------EVRDLYTQVGELE 380 Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGM----VQAYPHILYISCNPDSLCRDLSIL- 335 L + + +DPPRSG + P ++Y++C+P++L RD ++L Sbjct: 381 WLGGQPV-----DRVLLDPPRSGALAIVEHIDRIAWAGKPRLVYVACSPETLARDAAVLV 435 Query: 336 -STTHTIERLALFDQFPYTRHMECGVLLVR 364 + + + + D FP+T H+E L R Sbjct: 436 GTHGYRLSAAGVMDMFPHTAHVESIALFER 465 >gi|209522218|ref|ZP_03270855.1| RNA methyltransferase, TrmA family [Burkholderia sp. H160] gi|209497347|gb|EDZ97565.1| RNA methyltransferase, TrmA family [Burkholderia sp. H160] Length = 476 Score = 212 bits (541), Expect = 6e-53, Method: Composition-based stats. Identities = 79/382 (20%), Positives = 138/382 (36%), Gaps = 37/382 (9%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-IFRS---EPIHYRMRAEFHIWH--DG 55 ++ Q+A K L + + +FR YR RA + + + Sbjct: 112 GCSMQHLDMRAQVAVKQRVLEDNLQHLAKLRPETVFRPIHGPSWGYRYRARLAVRYLPER 171 Query: 56 DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115 + ++++ + ++A+++ + +R + ++ QI+ S Sbjct: 172 GGMRIGFHEKKSSYIADMKTCEVLPPHVSAMLMPLRFMVRKLSIY-DRMPQIELAVGSSV 230 Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD--RDYVDERLTV 173 A+V R L+ E LR+ K Q + T L +D L Sbjct: 231 TALVV----RNLEPLTAEDEQVLREFADEHKVQFWIQPGGPDTVTPLYPLDVQLDYTLPE 286 Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFD 232 G + ++ FTQ N IN ++ L + D +L+L+CG GNF+L LAR Sbjct: 287 YGIRMPFK--PTDFTQVNHAINRVLVSRALRLLAPARTDRVLDLFCGIGNFTLPLARISR 344 Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292 V+ +E ++ + A N N V + F D F Sbjct: 345 EVVGIEGSEVLTQRALANAELNGVAGHT-----------SFASRNLFEVTADDLRALGHF 393 Query: 293 KTIFVDPPRSGLDDATVGMVQ--------AYPHILYISCNPDSLCRDLSIL--STTHTIE 342 VDPPR G + + I+Y+SC P +L RD +L + + Sbjct: 394 DKFLVDPPREGALAIAKALAEIAQSGNGPLPKRIVYVSCAPATLARDAGLLVHEAGYRLV 453 Query: 343 RLALFDQFPYTRHMECGVLLVR 364 + + FP+T H+E L R Sbjct: 454 GAGVVNMFPHTSHVESIALFER 475 >gi|24666579|ref|NP_649083.2| CG3808 [Drosophila melanogaster] gi|23093152|gb|AAF49200.3| CG3808 [Drosophila melanogaster] Length = 615 Score = 212 bits (541), Expect = 6e-53, Method: Composition-based stats. Identities = 79/422 (18%), Positives = 155/422 (36%), Gaps = 64/422 (15%) Query: 3 GTLLIDQYEQQLAEKVDRLRQMMLAF----------QVPNL------QIFRSEPI-HYRM 45 L Y+QQ+ +K + + ++ + P+L ++ S + YR Sbjct: 165 CPLSHIAYDQQIKQKSEEMSALLAKYTQELRKVNPRAKPHLDKFQFHEVLPSPTVNGYRN 224 Query: 46 RAEFHIWHDGDD-----LYHIMFDQQTKERMRI---DYFMPGSLLINALMIEMMATIRLE 97 + EF + + + + E + + + +++ + Sbjct: 225 KNEFTVGKNSVGEVVVGFRLGCYSDGSVEVAEVADLPHLPEQAKWAARSFQDLVRKSKFL 284 Query: 98 PL--------LRAKLFQIDYLTSQSDQAIVTLIYHRLL-DDAWRECAIRLRDA------- 141 P R + + T + +V IY L +D E L+ Sbjct: 285 PFNPDGNIGHFRQLMVRCSSATGE--LMLVAGIYSSNLSEDEQVELKQELKSFYEDLAND 342 Query: 142 ----LHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVH 197 + YQ A +T ++ +T + L +R +F Q N Sbjct: 343 APYKCSSLYYQDVKHREAGQTINPVEHISGSTHITDTIQGLQFRISPLAFFQINTEGANV 402 Query: 198 MLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV 256 + + + + +L++ CG G +L A+H +V+ VEI +++ A +N AN + Sbjct: 403 LYQKAIDLVAPTKDTTMLDICCGTGTITLAFAKHCKKVMGVEIVPDAIKDAEFNAEANGI 462 Query: 257 NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--- 313 N K ++ +F ++M RE +++ + VDPPR+GL ++ ++ Sbjct: 463 KNAKFFTGNADDFIKSMVREALYDQEPGKPLDL----IAVVDPPRAGLHHRSIAAIRSAD 518 Query: 314 AYPHILYISCNPDSLCRDLSIL---------STTHTIERLALFDQFPYTRHMECGVLLVR 364 A ++Y+SCNP S R+ L + D FP+T H E +L R Sbjct: 519 AINRLVYVSCNPHSAKRNFIELARPESKQYKGEPFYPKSAVAVDMFPHTMHTELVILFER 578 Query: 365 KP 366 +P Sbjct: 579 EP 580 >gi|201065699|gb|ACH92259.1| FI05218p [Drosophila melanogaster] Length = 640 Score = 212 bits (541), Expect = 6e-53, Method: Composition-based stats. Identities = 79/422 (18%), Positives = 155/422 (36%), Gaps = 64/422 (15%) Query: 3 GTLLIDQYEQQLAEKVDRLRQMMLAF----------QVPNL------QIFRSEPI-HYRM 45 L Y+QQ+ +K + + ++ + P+L ++ S + YR Sbjct: 190 CPLSHIAYDQQIKQKSEEMSALLAKYTQELRKVNPRAKPHLDKFQFHEVLPSPTVNGYRN 249 Query: 46 RAEFHIWHDGDD-----LYHIMFDQQTKERMRI---DYFMPGSLLINALMIEMMATIRLE 97 + EF + + + + E + + + +++ + Sbjct: 250 KNEFTVGKNSVGEVVVGFRLGCYSDGSVEVAEVADLPHLPEQAKWAARSFQDLVRKSKFL 309 Query: 98 PL--------LRAKLFQIDYLTSQSDQAIVTLIYHRLL-DDAWRECAIRLRDA------- 141 P R + + T + +V IY L +D E L+ Sbjct: 310 PFNPDGNIGHFRQLMVRCSSATGE--LMLVAGIYSSNLSEDEQVELKQELKSFYEDLAND 367 Query: 142 ----LHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVH 197 + YQ A +T ++ +T + L +R +F Q N Sbjct: 368 APYKCSSLYYQDVKHREAGQTINPVEHISGSTHITDTIQGLQFRISPLAFFQINTEGANV 427 Query: 198 MLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV 256 + + + + +L++ CG G +L A+H +V+ VEI +++ A +N AN + Sbjct: 428 LYQKAIDLVAPTKDTTMLDICCGTGTITLAFAKHCKKVMGVEIVPDAIKDAEFNAEANGI 487 Query: 257 NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--- 313 N K ++ +F ++M RE +++ + VDPPR+GL ++ ++ Sbjct: 488 KNAKFFTGNADDFIKSMVREALYDQEPGKPLDL----IAVVDPPRAGLHHRSIAAIRSAD 543 Query: 314 AYPHILYISCNPDSLCRDLSIL---------STTHTIERLALFDQFPYTRHMECGVLLVR 364 A ++Y+SCNP S R+ L + D FP+T H E +L R Sbjct: 544 AINRLVYVSCNPHSAKRNFIELARPESKQYKGEPFYPKSAVAVDMFPHTMHTELVILFER 603 Query: 365 KP 366 +P Sbjct: 604 EP 605 >gi|330877092|gb|EGH11241.1| 23S rRNA m(5)U1939 methyltransferase [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 451 Score = 212 bits (541), Expect = 6e-53, Method: Composition-based stats. Identities = 84/371 (22%), Positives = 141/371 (38%), Gaps = 30/371 (8%) Query: 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWHDGDD 57 ++ +E+QLA K L + +L + YR RA + D Sbjct: 99 GCSVQHVPHEEQLALKQRMLAEQLLRVANVVPDEWAAPLSGAELAYRRRARVAVRWDAKA 158 Query: 58 LY--HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115 +++ + I+ + +M ++ A ++ L ++ + S Sbjct: 159 KRLDVGFRAAASQDIVSIEECPVLVQALQPIMSQLPAMLKSFSK-PQVLGHVELFSGSS- 216 Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175 V L + L +A L+ Q+ L G D + RL Sbjct: 217 -TAVLLRHTAPLAEA---DLATLQAFCATHGAQLWLHGEGEPQPASPG-DTLGYRLEPWN 271 Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRV 234 L +R F Q NA +N M+E L + +++L+CG GNF+L LA V Sbjct: 272 LQLAWR--PGDFIQVNAAVNTAMIEQALHWLAPAADERVMDLFCGLGNFALPLASLAKEV 329 Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294 +AVE VE A N +N ++NV+ + + L D + F Sbjct: 330 VAVEGVATMVERAAINAMSNDLHNVRFFQADLSQ------------PLTHADWAAEGFSA 377 Query: 295 IFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPY 352 + +DPPR G + + + +LY+SCNP +L RD L + ++R + D