PSIBLAST alignment of GI: 254781000 and protein with PDB id: 1uwv
>gi|47169345|pdb|1UWV|A Chain A, Crystal Structure Of Ruma, The Iron-Sulfur Cluster Containing E. Coli 23s Ribosomal Rna 5-Methyluridine Methyltransferase Length = 433
Score = 241 bits (616), Expect = 1e-61, Method: Composition-based stats.
Identities = 81/368 (22%), Positives = 135/368 (36%), Gaps = 32/368 (8%)
Query: 3 GTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL-QIFRSEPIHYRMRAEFHIWH--DGDDLY 59
+ Q K + ++ ++ P YR RA + + L
Sbjct: 90 CQQQHASVDLQQRSKSA----ALARLXKHDVSEVIADVPWGYRRRARLSLNYLPKTQQLQ 145
Query: 60 HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119
+ + + + + + AL+ ++ A + R L ++ + + S +
Sbjct: 146 XGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAXRH-LGHVELVQATSG-TLX 203
Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179
L + L A RE R H+ + L + + E L
Sbjct: 204 ILRHTAPLSSADREKLERFS---HSEGLDLYLAPDSEILETVSG-----EXPWYDSNGLR 255
Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNFSLVLARHFDRVLAVE 238
F Q NAG+N + L +L+L+CG GNF+L LA V+ VE
Sbjct: 256 LTFSPRDFIQVNAGVNQKXVARALEWLDVQPEDRVLDLFCGXGNFTLPLATQAASVVGVE 315
Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298
VE + N N + NV + +E + F + +D
Sbjct: 316 GVPALVEKGQQNARLNGLQNVTFYHENLEE------------DVTKQPWAKNGFDKVLLD 363
Query: 299 PPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHM 356
P R+G +++ P I+Y+SCNP +L RD ++L +TI RLA D FP+T H+
Sbjct: 364 PARAGAAGVXQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAXLDXFPHTGHL 423
Query: 357 ECGVLLVR 364
E VL R
Sbjct: 424 ESXVLFSR 431