PSIBLAST alignment of GI: 254781000 and protein with PDB id: 1uwv

>gi|47169345|pdb|1UWV|A Chain A, Crystal Structure Of Ruma, The Iron-Sulfur Cluster Containing E. Coli 23s Ribosomal Rna 5-Methyluridine Methyltransferase Length = 433
 Score =  241 bits (616), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 81/368 (22%), Positives = 135/368 (36%), Gaps = 32/368 (8%)

Query: 3   GTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL-QIFRSEPIHYRMRAEFHIWH--DGDDLY 59
                   + Q   K       +      ++ ++    P  YR RA   + +      L 
Sbjct: 90  CQQQHASVDLQQRSKSA----ALARLXKHDVSEVIADVPWGYRRRARLSLNYLPKTQQLQ 145

Query: 60  HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119
                  + + + +      +  + AL+ ++ A +      R  L  ++ + + S   + 
Sbjct: 146 XGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAXRH-LGHVELVQATSG-TLX 203

Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179
            L +   L  A RE   R     H+    + L   +   +         E        L 
Sbjct: 204 ILRHTAPLSSADREKLERFS---HSEGLDLYLAPDSEILETVSG-----EXPWYDSNGLR 255

Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNFSLVLARHFDRVLAVE 238
                  F Q NAG+N   +   L          +L+L+CG GNF+L LA     V+ VE
Sbjct: 256 LTFSPRDFIQVNAGVNQKXVARALEWLDVQPEDRVLDLFCGXGNFTLPLATQAASVVGVE 315

Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298
                VE  + N   N + NV     + +E             +         F  + +D
Sbjct: 316 GVPALVEKGQQNARLNGLQNVTFYHENLEE------------DVTKQPWAKNGFDKVLLD 363

Query: 299 PPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHM 356
           P R+G       +++  P  I+Y+SCNP +L RD  ++L   +TI RLA  D FP+T H+
Sbjct: 364 PARAGAAGVXQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAXLDXFPHTGHL 423

Query: 357 ECGVLLVR 364
           E  VL  R
Sbjct: 424 ESXVLFSR 431