PSIBLAST alignment of GI: 254781000 and protein with PDB id: 2bh2
gi|62738954|pdb|2BH2|A Chain A, Crystal Structure Of E. Coli 5-Methyluridine Methyltransferase Ruma In Complex With Ribosomal Rna Substrate And S-Adenosylhomocysteine. Length = 433
>gi|62738955|pdb|2BH2|B Chain B, Crystal Structure Of E. Coli 5-Methyluridine Methyltransferase Ruma In Complex With Ribosomal Rna Substrate And S-Adenosylhomocysteine. Length = 433
Score = 253 bits (645), Expect = 4e-65, Method: Composition-based stats.
Identities = 84/367 (22%), Positives = 140/367 (38%), Gaps = 30/367 (8%)
Query: 3 GTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWH--DGDDLYH 60
+ Q K L ++M ++ P YR RA + + L
Sbjct: 90 CQQQHASVDLQQRSKSAALARLMKH---DVSEVIADVPWGYRRRARLSLNYLPKTQQLQM 146
Query: 61 IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVT 120
+ + + + + + AL+ ++ A + +R L ++ + + S ++
Sbjct: 147 GFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMRH-LGHVELVQATSGTLMI- 204
Query: 121 LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIY 180
L + L A RE R H+ + L + + E L
Sbjct: 205 LRHTAPLSSADREKLERFS---HSEGLDLYLAPDSEILETVSG-----EMPWYDSNGLRL 256
Query: 181 RQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNFSLVLARHFDRVLAVEI 239
F Q NAG+N M+ L +L+L+CG GNF+L LA V+ VE
Sbjct: 257 TFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEG 316
Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
VE + N N + NV + +E + F + +DP
Sbjct: 317 VPALVEKGQQNARLNGLQNVTFYHENLEE------------DVTKQPWAKNGFDKVLLDP 364
Query: 300 PRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHME 357
R+G +++ P I+Y+SCNP +L RD ++L +TI RLA+ D FP+T H+E
Sbjct: 365 ARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLE 424
Query: 358 CGVLLVR 364
VL R
Sbjct: 425 SMVLFSR 431