>gnl|CDD|114667 pfam05958, tRNA_U5-meth_tr, tRNA (Uracil-5-)-methyltransferase. This family consists of (Uracil-5-)-methyltransferases EC:2.1.1.35 from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity. Length = 353

Score = 566 bits (1461), Expect = e-162 Identities = 223/357 (62%), Positives = 269/357 (75%), Gaps = 4/357 (1%) Query: 9 QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTK 68 QY QLAEKV RL+ + F P ++F S HYRMRAEF IWH+GDDLY+ MFDQQTK Sbjct: 1 QYTAQLAEKVSRLKDLFAPFDAPEPEVFESPDKHYRMRAEFRIWHEGDDLYYAMFDQQTK 60 Query: 69 ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLD 128 ++R+D F S LIN LM ++A +R P LR KLFQ+D+LT+ S +A+V+L+YH+ LD Sbjct: 61 SKIRVDQFPAASELINRLMPALIAALRQNPALRHKLFQVDFLTTLSGEALVSLLYHKQLD 120 Query: 129 DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFT 188 D WR+ A L+D K + LIGRA K KI LD+DYVDE L VAGR IYRQ+ENSFT Sbjct: 121 DEWRQAAEALKDI----KLNVNLIGRARKKKIVLDQDYVDETLPVAGREFIYRQVENSFT 176 Query: 189 QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248 QPNA +N+ MLEW T+G +GDLLELYCGNGNFSL LA++F RVLA EIAKPSV AA+ Sbjct: 177 QPNAAVNIKMLEWACEVTQGSKGDLLELYCGNGNFSLALAQNFRRVLATEIAKPSVNAAQ 236 Query: 249 YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDAT 308 YNIAAN+++NV+I+RMS++EFTQAM REF RLK ID+ SY TIFVDPPR+GLD T Sbjct: 237 YNIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGIDLKSYNCSTIFVDPPRAGLDPDT 296 Query: 309 VGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 +VQAY ILYISCNP++L +L LS TH +ER ALFDQFPYT HMECGVLL RK Sbjct: 297 CKLVQAYERILYISCNPETLKANLEQLSETHRVERFALFDQFPYTHHMECGVLLERK 353

RPSBLAST alignment for GI: 254781000 and conserved domain: pfam05958