RPSBLAST alignment for GI: 254781000 and conserved domain: TIGR02143

>gnl|CDD|131198 TIGR02143, trmA_only, tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. Length = 353
 Score =  566 bits (1461), Expect = e-162
 Identities = 223/357 (62%), Positives = 269/357 (75%), Gaps = 4/357 (1%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTK 68
           QY  QLAEKV RL+ +   F  P  ++F S   HYRMRAEF IWH+GDDLY+ MFDQQTK
Sbjct: 1   QYTAQLAEKVSRLKDLFAPFDAPEPEVFESPDKHYRMRAEFRIWHEGDDLYYAMFDQQTK 60

Query: 69  ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLD 128
            ++R+D F   S LIN LM  ++A +R  P LR KLFQ+D+LT+ S +A+V+L+YH+ LD
Sbjct: 61  SKIRVDQFPAASELINRLMPALIAALRQNPALRHKLFQVDFLTTLSGEALVSLLYHKQLD 120

Query: 129 DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFT 188
           D WR+ A  L+D     K  + LIGRA K KI LD+DYVDE L VAGR  IYRQ+ENSFT
Sbjct: 121 DEWRQAAEALKDI----KLNVNLIGRARKKKIVLDQDYVDETLPVAGREFIYRQVENSFT 176

Query: 189 QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248
           QPNA +N+ MLEW    T+G +GDLLELYCGNGNFSL LA++F RVLA EIAKPSV AA+
Sbjct: 177 QPNAAVNIKMLEWACEVTQGSKGDLLELYCGNGNFSLALAQNFRRVLATEIAKPSVNAAQ 236

Query: 249 YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDAT 308
           YNIAAN+++NV+I+RMS++EFTQAM   REF RLK ID+ SY   TIFVDPPR+GLD  T
Sbjct: 237 YNIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGIDLKSYNCSTIFVDPPRAGLDPDT 296

Query: 309 VGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
             +VQAY  ILYISCNP++L  +L  LS TH +ER ALFDQFPYT HMECGVLL RK
Sbjct: 297 CKLVQAYERILYISCNPETLKANLEQLSETHRVERFALFDQFPYTHHMECGVLLERK 353