Query gi|254781001|ref|YP_003065414.1| hypothetical protein CLIBASIA_04510 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 93
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 33803
Date Wed Jun 1 20:07:38 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781001.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >2w6a_A ARF GTPase-activating 22.1 44 0.0013 15.9 1.6 15 60-74 14-28 (63)
2 >2k4z_A DSRR; ISCA/SUFA/HESB l 15.2 46 0.0014 15.8 0.4 14 39-52 12-25 (48)
3 >2e62_A Protein AT5G25060; CWF 11.0 1.3E+02 0.0039 13.4 2.1 28 45-72 26-53 (61)
4 >1h16_A Formate acetyltransfer 11.0 73 0.0022 14.8 0.4 18 21-38 1-18 (72)
5 >2hnh_A DNA polymerase III alp 8.1 1.7E+02 0.0052 12.8 2.0 30 53-82 56-86 (112)
6 >2wzp_R Lactococcal phage P2 O 7.7 90 0.0026 14.3 -0.2 15 35-49 17-31 (114)
7 >2i3o_A Gamma-glutamyltransfer 6.0 2.2E+02 0.0066 12.2 1.1 14 32-46 23-36 (44)
8 >2o36_A ThiMet oligopeptidase; 6.0 2.3E+02 0.0067 12.2 1.3 19 47-65 10-28 (70)
9 >1zbm_A Hypothetical protein A 5.3 29 0.00085 16.9 -3.9 13 72-84 14-26 (90)
10 >2oni_A E3 ubiquitin-protein l 5.2 1.4E+02 0.0043 13.2 -0.3 21 19-39 53-73 (84)
No 1
>>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus} (A:)
Probab=22.11 E-value=44 Score=15.92 Aligned_cols=15 Identities=40% Similarity=0.563 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 788889987641100
Q gi|254781001|r 60 LYMIVKKALVRSKKR 74 (93)
Q Consensus 60 lymivkkalvrskkr 74 (93)
-||-||+||+.|..+
T Consensus 14 EylevK~AL~aSEak 28 (63)
T 2w6a_A 14 EYLELKKALATSEAK 28 (63)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
T ss_conf 999999998752999
No 2
>>2k4z_A DSRR; ISCA/SUFA/HESB like fold, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Allochromatium vinosum} (A:42-89)
Probab=15.17 E-value=46 Score=15.82 Aligned_cols=14 Identities=50% Similarity=0.864 Sum_probs=9.9
Q ss_pred HCCCCCEEHHHHHH
Q ss_conf 07788620355677
Q gi|254781001|r 39 SMPSGSIEYRDTLD 52 (93)
Q Consensus 39 smpsgsieyrdtld 52 (93)
.-|.|||||+--.|
T Consensus 12 Rn~DGsIeY~MGFD 25 (48)
T 2k4z_A 12 RNPDGSIDYRMGFD 25 (48)
T ss_dssp ECTTSCEEEEEEEE
T ss_pred CCCCCCCEEEEEEC
T ss_conf 69989848767742
No 3
>>2e62_A Protein AT5G25060; CWF21 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Arabidopsis thaliana} (A:)
Probab=11.00 E-value=1.3e+02 Score=13.41 Aligned_cols=28 Identities=32% Similarity=0.419 Sum_probs=22.3
Q ss_pred EEHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 2035567776412637888899876411
Q gi|254781001|r 45 IEYRDTLDERVANSGLYMIVKKALVRSK 72 (93)
Q Consensus 45 ieyrdtldervansglymivkkalvrsk 72 (93)
++|+|.|.+|--.+|.-+-.+-+.-|-+
T Consensus 26 mqYqdeLE~r~~k~g~~i~~qV~~yR~k 53 (61)
T 2e62_A 26 IEYRETLEEQGMKNPEEIERKVEINRKR 53 (61)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 9999889985167899999999999999
No 4
>>1h16_A Formate acetyltransferase 1; lyase, glycyl radical enzyme, acyltransferase, acetylation; HET: COA PG4; 1.53A {Escherichia coli} (A:41-112)
Probab=10.99 E-value=73 Score=14.78 Aligned_cols=18 Identities=33% Similarity=0.770 Sum_probs=14.7
Q ss_pred HHHHCCCHHHHHHHHHHH
Q ss_conf 984086311543153665
Q gi|254781001|r 21 SFIEGPTKAIVIIWLSIF 38 (93)
Q Consensus 21 sfiegptkaiviiwlsif 38 (93)
||.+|||..---+|-.+-
T Consensus 1 SFLagpTerT~~lw~~~~ 18 (72)
T 1h16_A 1 SFLAGATEATTTLWDKVM 18 (72)
T ss_dssp GGCCCCCHHHHHHHHHHH
T ss_pred HHHCCCCHHHHHHHHHHH
T ss_conf 131394454799999999
No 5
>>2hnh_A DNA polymerase III alpha subunit; DNA replication, nucleotidyltransferase, POL beta, PHP; HET: DNA; 2.30A {Escherichia coli} PDB: 2hqa_A* (A:278-389)
Probab=8.09 E-value=1.7e+02 Score=12.79 Aligned_cols=30 Identities=27% Similarity=0.495 Sum_probs=23.7
Q ss_pred HHHHCCCHHHHHHHHHHHHHHHHCCC-CHHH
Q ss_conf 76412637888899876411000025-3257
Q gi|254781001|r 53 ERVANSGLYMIVKKALVRSKKRKIAV-PSRQ 82 (93)
Q Consensus 53 ervansglymivkkalvrskkrkiav-psrq 82 (93)
++..-++.++||....-.+|+..|.| |+|-
T Consensus 56 ~~~gf~~YFLiv~d~v~~ak~~gi~vgpgRG 86 (112)
T 2hnh_A 56 NQMGFPGYFLIVMEFIQWSKDNGVPVGPGRG 86 (112)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTTCCBCSCCT
T ss_pred HHCCCCHHHHHHHHHHHHHHHCCEEEECCCC
T ss_conf 8679729999999999998726578513677
No 6
>>2wzp_R Lactococcal phage P2 ORF16; baseplate, viral protein; 2.60A {Lactococcus phage P2} PDB: 2x53_Y (R:1-114)
Probab=7.70 E-value=90 Score=14.32 Aligned_cols=15 Identities=53% Similarity=0.758 Sum_probs=12.1
Q ss_pred HHHHHCCCCCEEHHH
Q ss_conf 366507788620355
Q gi|254781001|r 35 LSIFSMPSGSIEYRD 49 (93)
Q Consensus 35 lsifsmpsgsieyrd 49 (93)
.|-||||.|.-|-|.
T Consensus 17 isdfsmpngkkekrg 31 (114)
T 2wzp_R 17 ISDFSMPNGKKEKRG 31 (114)
T ss_dssp CCCEECTTSCEECCC
T ss_pred CHHCCCCCCCCCCCC
T ss_conf 010337887422358
No 7
>>2i3o_A Gamma-glutamyltransferase related protein; structural genomics, PSI, protein structure initiative; 2.03A {Thermoplasma acidophilum} (A:142-185)
Probab=6.03 E-value=2.2e+02 Score=12.22 Aligned_cols=14 Identities=50% Similarity=0.911 Sum_probs=9.8
Q ss_pred HHHHHHHHCCCCCEE
Q ss_conf 315366507788620
Q gi|254781001|r 32 IIWLSIFSMPSGSIE 46 (93)
Q Consensus 32 iiwlsifsmpsgsie 46 (93)
--|-|||. |.||..
T Consensus 23 rgwssif~-pngsvp 36 (44)
T 2i3o_A 23 RGWSSIFX-PNGSVP 36 (44)
T ss_dssp HHHHHHHS-TTSSCC
T ss_pred CCHHHHCC-CCCCCC
T ss_conf 32233137-799778
No 8
>>2o36_A ThiMet oligopeptidase; thermolysin-like domain, substrate-binding channel, hydrolase; 1.95A {Homo sapiens} PDB: 1s4b_P (A:270-287,A:530-581)
Probab=5.96 E-value=2.3e+02 Score=12.19 Aligned_cols=19 Identities=32% Similarity=0.718 Sum_probs=14.3
Q ss_pred HHHHHHHHHHCCCHHHHHH
Q ss_conf 3556777641263788889
Q gi|254781001|r 47 YRDTLDERVANSGLYMIVK 65 (93)
Q Consensus 47 yrdtldervansglymivk 65 (93)
+-|.|....+|+||.+.-.
T Consensus 10 ~~~~~~~~~vNsgLf~LRQ 28 (70)
T 2o36_A 10 FLDELAQKLANTGLFNLRQ 28 (70)
T ss_dssp HHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
T ss_conf 9999999866589999999
No 9
>>1zbm_A Hypothetical protein AF1704; alpha-beta protein, structural genomics, PSI, protein structure initiative; 2.30A {Archaeoglobus fulgidus dsm 4304} (A:89-178)
Probab=5.25 E-value=29 Score=16.91 Aligned_cols=13 Identities=46% Similarity=0.721 Sum_probs=6.0
Q ss_pred HHHHCCCCHHHHH
Q ss_conf 1000025325788
Q gi|254781001|r 72 KKRKIAVPSRQVT 84 (93)
Q Consensus 72 kkrkiavpsrqvt 84 (93)
+.++||||.+..|
T Consensus 14 ~~~~iAvPG~~TT 26 (90)
T 1zbm_A 14 DGKRIAVPGRYTT 26 (90)
T ss_dssp TTCEEEESCTTSH
T ss_pred CCCCEEECCCCHH
T ss_conf 7883785572508
No 10
>>2oni_A E3 ubiquitin-protein ligase NEDD4-like protein; alpha and beta protein (A + B), E3 ligase, HECT domain, UBL- conjugation pathway; HET: MSE; 2.20A {Homo sapiens} (A:126-172,A:244-280)
Probab=5.25 E-value=1.4e+02 Score=13.22 Aligned_cols=21 Identities=33% Similarity=0.570 Sum_probs=14.7
Q ss_pred HHHHHHCCCHHHHHHHHHHHH
Q ss_conf 999840863115431536650
Q gi|254781001|r 19 LHSFIEGPTKAIVIIWLSIFS 39 (93)
Q Consensus 19 lhsfiegptkaiviiwlsifs 39 (93)
+.+|.+|=..-|---|+++|+
T Consensus 53 ~~af~~Gf~~vip~~~l~~F~ 73 (84)
T 2oni_A 53 XNAFLEGFTELLPIDLIKIFD 73 (84)
T ss_dssp HHHHHHHHHHHSCHHHHTTSC
T ss_pred HHHHHHHHHHHCCHHHHHHCC
T ss_conf 999997787646688876079
Done!