BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= gi|254781001|ref|YP_003065414.1| hypothetical protein
CLIBASIA_04510 [Candidatus Liberibacter asiaticus str. psy62]
(93 letters)
Database: nr
14,124,377 sequences; 4,842,793,630 total letters
Searching..................................................done
>gi|254781001|ref|YP_003065414.1| hypothetical protein CLIBASIA_04510 [Candidatus Liberibacter
asiaticus str. psy62]
gi|254040678|gb|ACT57474.1| hypothetical protein CLIBASIA_04510 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 93
Score = 181 bits (459), Expect = 3e-44, Method: Composition-based stats.
Identities = 93/93 (100%), Positives = 93/93 (100%)
Query: 1 MTISSPSLSDYLKIEHYMLHSFIEGPTKAIVIIWLSIFSMPSGSIEYRDTLDERVANSGL 60
MTISSPSLSDYLKIEHYMLHSFIEGPTKAIVIIWLSIFSMPSGSIEYRDTLDERVANSGL
Sbjct: 1 MTISSPSLSDYLKIEHYMLHSFIEGPTKAIVIIWLSIFSMPSGSIEYRDTLDERVANSGL 60
Query: 61 YMIVKKALVRSKKRKIAVPSRQVTDLYKETLFP 93
YMIVKKALVRSKKRKIAVPSRQVTDLYKETLFP
Sbjct: 61 YMIVKKALVRSKKRKIAVPSRQVTDLYKETLFP 93
>gi|238754704|ref|ZP_04616056.1| HTH-type transcriptional repressor fabR [Yersinia ruckeri ATCC
29473]
gi|238707012|gb|EEP99377.1| HTH-type transcriptional repressor fabR [Yersinia ruckeri ATCC
29473]
Length = 211
Score = 38.9 bits (89), Expect = 0.22, Method: Composition-based stats.
Identities = 30/77 (38%), Positives = 43/77 (55%), Gaps = 10/77 (12%)
Query: 8 LSDYLKIEHYMLHSFIEGPTKAIVIIWLSIFSMPSG----SIEYRDTLDERVANSGLYMI 63
L+DYL++EH+M SF E +A+V I +FS + IE R L+ER+ L MI
Sbjct: 135 LADYLELEHHMPRSFTEAQAEAMVTI---VFSAGAEVLDVDIEQRRQLEERLVLQ-LRMI 190
Query: 64 VKKAL--VRSKKRKIAV 78
K A R ++ K+AV
Sbjct: 191 SKGAYYWYRREQEKLAV 207
>gi|238750872|ref|ZP_04612370.1| HTH-type transcriptional repressor fabR [Yersinia rohdei ATCC
43380]
gi|238711016|gb|EEQ03236.1| HTH-type transcriptional repressor fabR [Yersinia rohdei ATCC
43380]
Length = 210
Score = 36.6 bits (83), Expect = 1.1, Method: Composition-based stats.
Identities = 29/77 (37%), Positives = 44/77 (57%), Gaps = 10/77 (12%)
Query: 8 LSDYLKIEHYMLHSFIEGPTKAIVIIWLSIFSMPSGS----IEYRDTLDERVANSGLYMI 63
L+DYL++E++M SF E +A+V I +FS + + IE R L+ER+ L MI
Sbjct: 135 LADYLELENHMPRSFTEAQAEAMVTI---VFSAGAEALDVDIEQRRQLEERLVLQ-LRMI 190
Query: 64 VKKAL--VRSKKRKIAV 78
K A R ++ K+AV
Sbjct: 191 SKGAYYWYRREQEKLAV 207
>gi|238794890|ref|ZP_04638489.1| HTH-type transcriptional repressor fabR [Yersinia intermedia ATCC
29909]
gi|238725765|gb|EEQ17320.1| HTH-type transcriptional repressor fabR [Yersinia intermedia ATCC
29909]
Length = 210
Score = 36.2 bits (82), Expect = 1.6, Method: Composition-based stats.
Identities = 29/77 (37%), Positives = 43/77 (55%), Gaps = 10/77 (12%)
Query: 8 LSDYLKIEHYMLHSFIEGPTKAIVIIWLSIFSMPSG----SIEYRDTLDERVANSGLYMI 63
L+DYL++E++M SF E +A+V I +FS + IE R L+ER+ L MI
Sbjct: 135 LADYLELENHMPRSFTEAQAEAMVTI---VFSAGAEVLDVDIEQRRQLEERLVLQ-LRMI 190
Query: 64 VKKAL--VRSKKRKIAV 78
K A R ++ K+AV
Sbjct: 191 SKGAYYWYRREQEKLAV 207
>gi|238789622|ref|ZP_04633406.1| HTH-type transcriptional repressor fabR [Yersinia frederiksenii
ATCC 33641]
gi|238722375|gb|EEQ14031.1| HTH-type transcriptional repressor fabR [Yersinia frederiksenii
ATCC 33641]
Length = 211
Score = 36.2 bits (82), Expect = 1.6, Method: Composition-based stats.
Identities = 29/77 (37%), Positives = 43/77 (55%), Gaps = 10/77 (12%)
Query: 8 LSDYLKIEHYMLHSFIEGPTKAIVIIWLSIFSMPSG----SIEYRDTLDERVANSGLYMI 63
L+DYL++E++M SF E +A+V I +FS + IE R L+ER+ L MI
Sbjct: 135 LADYLELENHMPRSFTEAQAEAMVTI---VFSAGAEVLDVDIEQRRQLEERLVLQ-LRMI 190
Query: 64 VKKAL--VRSKKRKIAV 78
K A R ++ K+AV
Sbjct: 191 SKGAYYWYRREQEKLAV 207
>gi|238798325|ref|ZP_04641809.1| HTH-type transcriptional repressor fabR [Yersinia mollaretii ATCC
43969]
gi|238717872|gb|EEQ09704.1| HTH-type transcriptional repressor fabR [Yersinia mollaretii ATCC
43969]
Length = 211
Score = 36.2 bits (82), Expect = 1.6, Method: Composition-based stats.
Identities = 29/77 (37%), Positives = 43/77 (55%), Gaps = 10/77 (12%)
Query: 8 LSDYLKIEHYMLHSFIEGPTKAIVIIWLSIFSMPSG----SIEYRDTLDERVANSGLYMI 63
L+DYL++E++M SF E +A+V I +FS + IE R L+ER+ L MI
Sbjct: 135 LADYLELENHMPRSFTEAQAEAMVTI---VFSAGAEVLDVDIEQRRQLEERLVLQ-LRMI 190
Query: 64 VKKAL--VRSKKRKIAV 78
K A R ++ K+AV
Sbjct: 191 SKGAYYWYRREQEKLAV 207
>gi|307128961|ref|YP_003880977.1| DNA-binding transcriptional regulatory protein FabR [Dickeya
dadantii 3937]
gi|306526490|gb|ADM96420.1| DNA-binding transcriptional regulatory protein FabR [Dickeya
dadantii 3937]
Length = 212
Score = 35.4 bits (80), Expect = 2.4, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 8/72 (11%)
Query: 8 LSDYLKIEHYMLHSFIEGPTKAIVIIWLSIFSMPSGS----IEYRDTLDERVANSGLYMI 63
L+DYL++E+++ SF E +A+VII +FS + + IE R L+ER+ L MI
Sbjct: 136 LADYLEVENHIPRSFAEAQAEAMVII---VFSAGAEALDVDIEQRRQLEERLVLQ-LRMI 191
Query: 64 VKKALVRSKKRK 75
K A +K +
Sbjct: 192 AKGAYYWYRKEQ 203
Database: nr
Posted date: May 22, 2011 12:22 AM
Number of letters in database: 999,999,966
Number of sequences in database: 2,987,313
Database: /data/usr2/db/fasta/nr.01
Posted date: May 22, 2011 12:30 AM
Number of letters in database: 999,999,796
Number of sequences in database: 2,903,041
Database: /data/usr2/db/fasta/nr.02
Posted date: May 22, 2011 12:36 AM
Number of letters in database: 999,999,281
Number of sequences in database: 2,904,016
Database: /data/usr2/db/fasta/nr.03
Posted date: May 22, 2011 12:41 AM
Number of letters in database: 999,999,960
Number of sequences in database: 2,935,328
Database: /data/usr2/db/fasta/nr.04
Posted date: May 22, 2011 12:46 AM
Number of letters in database: 842,794,627
Number of sequences in database: 2,394,679
Lambda K H
0.320 0.135 0.380
Lambda K H
0.267 0.0414 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 797,422,926
Number of Sequences: 14124377
Number of extensions: 26107240
Number of successful extensions: 51644
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 51638
Number of HSP's gapped (non-prelim): 13
length of query: 93
length of database: 4,842,793,630
effective HSP length: 63
effective length of query: 30
effective length of database: 3,952,957,879
effective search space: 118588736370
effective search space used: 118588736370
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 75 (33.5 bits)