RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254781001|ref|YP_003065414.1| hypothetical protein
CLIBASIA_04510 [Candidatus Liberibacter asiaticus str. psy62]
         (93 letters)



>gnl|CDD|33044 COG3232, HpaF, 5-carboxymethyl-2-hydroxymuconate isomerase [Amino
          acid transport and metabolism].
          Length = 127

 Score = 24.5 bits (53), Expect = 6.1
 Identities = 13/32 (40%), Positives = 15/32 (46%)

Query: 40 MPSGSIEYRDTLDERVANSGLYMIVKKALVRS 71
          MP   +EY D L E     GL   V  AL+ S
Sbjct: 1  MPHLIMEYTDNLREEADLPGLLEKVNAALIAS 32


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.320    0.135    0.380 

Gapped
Lambda     K      H
   0.267   0.0703    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 1,088,674
Number of extensions: 48381
Number of successful extensions: 95
Number of sequences better than 10.0: 1
Number of HSP's gapped: 95
Number of HSP's successfully gapped: 6
Length of query: 93
Length of database: 6,263,737
Length adjustment: 61
Effective length of query: 32
Effective length of database: 4,945,588
Effective search space: 158258816
Effective search space used: 158258816
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.5 bits)