RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254781001|ref|YP_003065414.1| hypothetical protein
CLIBASIA_04510 [Candidatus Liberibacter asiaticus str. psy62]
         (93 letters)



>1v97_A XD, xanthine dehydrogenase; molybdopterin, FYX-051, reaction
           intermediate, oxidoreductase; HET: MTE FAD FYX; 1.94A
           {Bos taurus} (A:285-540,A:1311-1332)
          Length = 278

 Score = 25.4 bits (55), Expect = 2.8
 Identities = 13/50 (26%), Positives = 19/50 (38%)

Query: 37  IFSMPSGSIEYRDTLDERVANSGLYMIVKKALVRSKKRKIAVPSRQVTDL 86
               P G IE+R TL           ++KK    SK +   +   + T L
Sbjct: 213 SPDAPGGMIEFRRTLTLSFFFKFYLTVLKKLGKDSKDKCGKLDPDKFTTL 262


>1zbm_A Hypothetical protein AF1704; alpha-beta protein,
          structural genomics, PSI, protein structure initiative;
          2.30A {Archaeoglobus fulgidus dsm 4304} (A:89-178)
          Length = 90

 Score = 24.2 bits (53), Expect = 7.0
 Identities = 8/23 (34%), Positives = 14/23 (60%)

Query: 62 MIVKKALVRSKKRKIAVPSRQVT 84
          ++V K+ +    ++IAVP R  T
Sbjct: 4  VVVAKSEISLDGKRIAVPGRYTT 26


>1xjj_A Ribonucleotide reductase, B12-dependent; 10 alpha-beta
           barrel, allosteric regulation, substrate specificity,
           protein-nucleotide complex; HET: DGT; 1.86A {Thermotoga
           maritima} PDB: 1xjf_A* 1xjg_A* 1xje_A* 1xjk_A* 1xjm_A*
           1xjn_A* (A:1-504,A:574-644)
          Length = 575

 Score = 23.9 bits (51), Expect = 7.3
 Identities = 11/82 (13%), Positives = 25/82 (30%), Gaps = 4/82 (4%)

Query: 11  YLKIEHYMLHSFIEGPTKAIVIIWLSIFSMPSGSIEYRDTLDERVANSGLYMIVKKALVR 70
            L I H  +  FI+   +      L+ F++  G    +  + +     G   +       
Sbjct: 214 ILNINHPDIEEFIDAKKENTGEAVLNFFNLSVGFPMDKKEILKLYEEDGELELSH----P 269

Query: 71  SKKRKIAVPSRQVTDLYKETLF 92
               +  V  R++        +
Sbjct: 270 RSTIRKKVKIRELFRKIATNAW 291


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.320    0.135    0.380 

Gapped
Lambda     K      H
   0.267   0.0733    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 664,501
Number of extensions: 25197
Number of successful extensions: 36
Number of sequences better than 10.0: 1
Number of HSP's gapped: 36
Number of HSP's successfully gapped: 3
Length of query: 93
Length of database: 4,956,049
Length adjustment: 54
Effective length of query: 39
Effective length of database: 3,130,579
Effective search space: 122092581
Effective search space used: 122092581
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.0 bits)