RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254781001|ref|YP_003065414.1| hypothetical protein
CLIBASIA_04510 [Candidatus Liberibacter asiaticus str. psy62]
         (93 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 23.7 bits (51), Expect = 8.7
 Identities = 13/78 (16%), Positives = 27/78 (34%), Gaps = 16/78 (20%)

Query: 3   ISSPSLSDYL-----KIEHYMLHSFIEGPTKAIVIIWLSIFSMPSGSIEYRDTLDERVAN 57
           ++SP  S  L      I   ++ + +    K I I    ++    GS + R  L   ++ 
Sbjct: 423 VASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQI---PVYDTFDGS-DLRV-LSGSISE 477

Query: 58  SGLYMIVK------KALV 69
             +  I++          
Sbjct: 478 RIVDCIIRLPVKWETTTQ 495


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.320    0.135    0.380 

Gapped
Lambda     K      H
   0.267   0.0582    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 772,123
Number of extensions: 30517
Number of successful extensions: 68
Number of sequences better than 10.0: 1
Number of HSP's gapped: 68
Number of HSP's successfully gapped: 4
Length of query: 93
Length of database: 5,693,230
Length adjustment: 60
Effective length of query: 33
Effective length of database: 4,238,590
Effective search space: 139873470
Effective search space used: 139873470
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.4 bits)