BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254781001|ref|YP_003065414.1| hypothetical protein
CLIBASIA_04510 [Candidatus Liberibacter asiaticus str. psy62]
         (93 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254781001|ref|YP_003065414.1| hypothetical protein CLIBASIA_04510 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 93

 Score =  189 bits (480), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 93/93 (100%), Positives = 93/93 (100%)

Query: 1  MTISSPSLSDYLKIEHYMLHSFIEGPTKAIVIIWLSIFSMPSGSIEYRDTLDERVANSGL 60
          MTISSPSLSDYLKIEHYMLHSFIEGPTKAIVIIWLSIFSMPSGSIEYRDTLDERVANSGL
Sbjct: 1  MTISSPSLSDYLKIEHYMLHSFIEGPTKAIVIIWLSIFSMPSGSIEYRDTLDERVANSGL 60

Query: 61 YMIVKKALVRSKKRKIAVPSRQVTDLYKETLFP 93
          YMIVKKALVRSKKRKIAVPSRQVTDLYKETLFP
Sbjct: 61 YMIVKKALVRSKKRKIAVPSRQVTDLYKETLFP 93


>gi|254780445|ref|YP_003064858.1| isoleucyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 963

 Score = 23.1 bits (48), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 10/23 (43%), Positives = 13/23 (56%)

Query: 2   TISSPSLSDYLKIEHYMLHSFIE 24
           T + PSL+D   +E  MLH   E
Sbjct: 701 TGNEPSLADMPALEQLMLHRLTE 723


>gi|255764488|ref|YP_003065099.2| flagellar motor protein MotA [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 290

 Score = 20.8 bits (42), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 4/40 (10%)

Query: 54  RVANSGLYMIVKKALVRSKKRKIAVPSRQVTDLYKETLFP 93
           R+    LY+IVKKAL+       A+P  QV   Y   + P
Sbjct: 231 RLKQHRLYIIVKKALIAYMNG--AIP--QVAIEYGRKVLP 266


>gi|254780776|ref|YP_003065189.1| ribosome recycling factor [Candidatus Liberibacter asiaticus str.
          psy62]
          Length = 186

 Score = 20.8 bits (42), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 8/16 (50%), Positives = 11/16 (68%)

Query: 5  SPSLSDYLKIEHYMLH 20
          SPS+ D +K+E Y  H
Sbjct: 34 SPSMLDLVKVEAYGSH 49


>gi|254780682|ref|YP_003065095.1| hypothetical protein CLIBASIA_02845 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 199

 Score = 20.4 bits (41), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 8/31 (25%), Positives = 17/31 (54%)

Query: 58 SGLYMIVKKALVRSKKRKIAVPSRQVTDLYK 88
          SG+ +I+      +    I +PSR++ D ++
Sbjct: 52 SGIILILSPTDCTANTANILIPSRKIIDYHR 82


>gi|254780232|ref|YP_003064645.1| inorganic pyrophosphatase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 177

 Score = 20.4 bits (41), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 7/15 (46%), Positives = 12/15 (80%)

Query: 73  KRKIAVPSRQVTDLY 87
           ++ +AVPS+ +T LY
Sbjct: 105 EKILAVPSKNITSLY 119


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.320    0.135    0.380 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,235
Number of Sequences: 1233
Number of extensions: 1861
Number of successful extensions: 9
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of query: 93
length of database: 328,796
effective HSP length: 60
effective length of query: 33
effective length of database: 254,816
effective search space:  8408928
effective search space used:  8408928
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.4 bits)
S2: 31 (16.5 bits)