Query gi|254781002|ref|YP_003065415.1| hypothetical protein CLIBASIA_04515 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 108
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 23785
Date Tue May 31 23:18:28 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781002.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bz1_T PSII-T, PSII-TC, photos 39.5 16 0.00067 15.9 2.5 17 2-18 1-17 (32)
2 3bz1_E Cytochrome B559 subunit 8.9 86 0.0036 11.8 2.3 15 79-93 26-40 (84)
3 1nxh_A MTH396 protein; hypothe 8.6 81 0.0034 11.9 0.6 32 18-50 69-106 (126)
4 2vzc_A Alpha-parvin; membrane, 6.3 1.2E+02 0.0049 11.1 2.4 17 67-84 111-127 (131)
5 2r9r_B Paddle chimera voltage 5.8 55 0.0023 12.8 -1.4 11 53-63 380-390 (514)
6 3bkd_A Transmembrane domain of 5.8 1.2E+02 0.0052 10.9 0.7 5 28-32 20-24 (26)
7 1wjo_A T-plastin; CH domain, a 5.6 96 0.004 11.5 -0.2 16 68-84 99-114 (124)
8 2f49_C STE5 peptide, mitogen-a 5.3 50 0.0021 13.1 -1.8 18 58-75 6-23 (30)
9 1vf5_H Protein PET N; photosyn 5.0 1.4E+02 0.0059 10.6 1.7 10 71-80 10-19 (29)
10 3gxv_A Replicative DNA helicas 4.9 1.4E+02 0.0059 10.6 1.4 30 41-70 15-44 (123)
No 1
>3bz1_T PSII-T, PSII-TC, photosystem II reaction center protein T; electron transport photosystem, membrane complex, transmembrane alpha-helix; HET: CLA PHO HEM PL9 BCR DGD LHG SQD LMG LMT; 2.90A {Thermosynechococcus elongatus} PDB: 1s5l_T* 2axt_T* 3bz2_T* 3kzi_T* 3a0b_T* 3a0h_T*
Probab=39.55 E-value=16 Score=15.86 Aligned_cols=17 Identities=47% Similarity=1.110 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q ss_conf 56999999999999999
Q gi|254781002|r 2 MEMIFFAFVFTCILLLW 18 (108)
Q Consensus 2 memiffafvftcilllw 18 (108)
||.|-+.|.|.||.-|.
T Consensus 1 me~iayv~i~acii~lf 17 (32)
T 3bz1_T 1 METITYVFIFACIIALF 17 (32)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred CCEEHHHHHHHHHHHHH
T ss_conf 94213589999999999
No 2
>3bz1_E Cytochrome B559 subunit alpha; electron transport photosystem, membrane complex, transmembrane alpha-helix; HET: CLA PHO HEM PL9 BCR DGD LHG SQD LMG LMT; 2.90A {Thermosynechococcus elongatus} PDB: 1s5l_E* 1w5c_E* 2axt_E* 3bz2_E* 3kzi_E* 1izl_E* 3a0b_E* 3a0h_E*
Probab=8.94 E-value=86 Score=11.79 Aligned_cols=15 Identities=40% Similarity=0.948 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 999999999999997
Q gi|254781002|r 79 SILSFFITFWIFVAS 93 (108)
Q Consensus 79 silsffitfwifvas 93 (108)
.|-|.||.=|+||.+
T Consensus 26 TIPslFiaGwLFVst 40 (84)
T 3bz1_E 26 TIPALFIAGWLFVST 40 (84)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHEEC
T ss_conf 122898722553014
No 3
>1nxh_A MTH396 protein; hypothetical protein, disulfide bonds, homodimer, structural genomics, PSI, protein structure initiative; 2.80A {Methanothermobacterthermautotrophicus} SCOP: a.200.1.1
Probab=8.58 E-value=81 Score=11.94 Aligned_cols=32 Identities=22% Similarity=0.319 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHH
Q ss_conf 99999999999974568------9888899999999986
Q gi|254781002|r 18 WCVFIGLIACWIVDRWE------YFFIRRKYVLTAILLN 50 (108)
Q Consensus 18 wcvfigliacwivdrwe------yffirrkyvltailln 50 (108)
--|-|.|--||++|-.+ -=-||.|-|-+ |+-+
T Consensus 69 rkvdiDL~LcWl~D~~~lIs~~dAD~irkkvve~-il~~ 106 (126)
T 1nxh_A 69 EKLHSDLQLCWLVDVMEIISVDDAEALKDEITEL-VLAG 106 (126)
T ss_dssp HHHHHHTTHHHHTTTSCCSCHHHHHHHHHHHHHH-HHTT
T ss_pred HHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHH-HHHC
T ss_conf 7704344505999999981173799999999999-9807
No 4
>2vzc_A Alpha-parvin; membrane, cytoplasm, cytoskeleton, cell junction, alternative splicing, calponin homology domain, actin-binding, cell membrane; 1.05A {Homo sapiens} PDB: 2vzd_A* 2vzg_B* 2vzi_B* 2k2r_A 3kmu_B 3kmw_B*
Probab=6.30 E-value=1.2e+02 Score=11.07 Aligned_cols=17 Identities=6% Similarity=0.305 Sum_probs=12.4
Q ss_pred CCHHHHHHHHHHHHHHHH
Q ss_conf 478899999999999999
Q gi|254781002|r 67 TNPHSIILAFVWSILSFF 84 (108)
Q Consensus 67 tnphsiilafvwsilsff 84 (108)
.|+ ..||+++|++..-|
T Consensus 111 G~~-k~iL~llw~l~~~y 127 (131)
T 2vzc_A 111 CDL-KSTLRVLYNLFTKY 127 (131)
T ss_dssp TCH-HHHHHHHHHHHHHH
T ss_pred CCH-HHHHHHHHHHHHHC
T ss_conf 867-57999999999985
No 5
>2r9r_B Paddle chimera voltage gated potassium channel KV1.2-KV2.1; voltage sensor, voltage dependent, ION channel, shaker, membrane protein; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=5.76 E-value=55 Score=12.84 Aligned_cols=11 Identities=18% Similarity=0.691 Sum_probs=4.5
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999889867
Q gi|254781002|r 53 FFYSLQTIFSV 63 (108)
Q Consensus 53 ffyslqtifsv 63 (108)
++++.+|...|
T Consensus 380 ~ww~ivTmtTV 390 (514)
T 2r9r_B 380 FWWAVVSMTTV 390 (514)
T ss_dssp HHHHHHHHTTC
T ss_pred CEEEEEECCEE
T ss_conf 20421320243
No 6
>3bkd_A Transmembrane domain of matrix protein M2; proton channel, M2TM, influenza A virus M2 protein, viral protein, membrane protein; HET: MSE BOG; 2.05A {Synthetic} SCOP: j.35.1.1 PDB: 1mp6_A 1nyj_A 2kqt_A* 2kad_A* 3c9j_A*
Probab=5.76 E-value=1.2e+02 Score=10.89 Aligned_cols=5 Identities=80% Similarity=1.956 Sum_probs=0.0
Q ss_pred HHHHH
Q ss_conf 99745
Q gi|254781002|r 28 WIVDR 32 (108)
Q Consensus 28 wivdr 32 (108)
||.||
T Consensus 20 wildr 24 (26)
T 3bkd_A 20 WILDR 24 (26)
T ss_dssp HHHHH
T ss_pred HHHHH
T ss_conf 99975
No 7
>1wjo_A T-plastin; CH domain, actin binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: a.40.1.1 PDB: 2d85_A
Probab=5.56 E-value=96 Score=11.52 Aligned_cols=16 Identities=6% Similarity=0.177 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHHHH
Q ss_conf 78899999999999999
Q gi|254781002|r 68 NPHSIILAFVWSILSFF 84 (108)
Q Consensus 68 nphsiilafvwsilsff 84 (108)
||.+ ||+|+|++...+
T Consensus 99 n~k~-iL~~i~~L~~~~ 114 (124)
T 1wjo_A 99 KPKM-VMTVFACLMGRG 114 (124)
T ss_dssp CTTT-TTHHHHHHHHHS
T ss_pred CCCH-HHHHHHHHHHHH
T ss_conf 9754-899999999987
No 8
>2f49_C STE5 peptide, mitogen-activated protein kinase FUS3; protein-petide complex, transferase; 1.90A {Saccharomyces cerevisiae}
Probab=5.27 E-value=50 Score=13.07 Aligned_cols=18 Identities=44% Similarity=0.541 Sum_probs=0.0
Q ss_pred HHHHHHHHHCCHHHHHHH
Q ss_conf 889867620478899999
Q gi|254781002|r 58 QTIFSVEHYTNPHSIILA 75 (108)
Q Consensus 58 qtifsvehytnphsiila 75 (108)
|||+|-..--||.-|.-|
T Consensus 6 qtiysqapslnpnlilaa 23 (30)
T 2f49_C 6 QTIYSQAPSLNPNLILAA 23 (30)
T ss_pred HHHHHCCCCCCCCEEEEC
T ss_conf 214220877897746657
No 9
>1vf5_H Protein PET N; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.27.1 PDB: 2d2c_H* 2e74_H* 2e75_H* 2e76_H* 2zt9_H*
Probab=4.96 E-value=1.4e+02 Score=10.59 Aligned_cols=10 Identities=40% Similarity=1.198 Sum_probs=0.0
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999999
Q gi|254781002|r 71 SIILAFVWSI 80 (108)
Q Consensus 71 siilafvwsi 80 (108)
|....|.|||
T Consensus 10 ~llvvftwsi 19 (29)
T 1vf5_H 10 ALLVVFTWSI 19 (29)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHEE
T ss_conf 9889863123
No 10
>3gxv_A Replicative DNA helicase; hexameric helicase, primase, replication, ATP-binding, autocatalytic cleavage, DNA replication; 2.20A {Helicobacter pylori} PDB: 3gxv_D 3gxv_C
Probab=4.94 E-value=1.4e+02 Score=10.58 Aligned_cols=30 Identities=17% Similarity=0.366 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
Q ss_conf 999999998689999998898676204788
Q gi|254781002|r 41 KYVLTAILLNYQFFYSLQTIFSVEHYTNPH 70 (108)
Q Consensus 41 kyvltaillnyqffyslqtifsvehytnph 70 (108)
+.+|.++|.+-..+-......+.|++.+|.
T Consensus 15 ~alLg~lL~~p~~~~~v~~~l~~edF~~~~ 44 (123)
T 3gxv_A 15 RIVLSGIVLANHKIEEVHSVLEPSDFYYPP 44 (123)
T ss_dssp HHHHHHHHHSGGGHHHHHTTCCGGGCSSHH
T ss_pred HHHHHHHHCCHHHHHHHHHHCCHHHHCCHH
T ss_conf 999999996984899999468999959798
Done!