BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= gi|254781002|ref|YP_003065415.1| hypothetical protein
CLIBASIA_04515 [Candidatus Liberibacter asiaticus str. psy62]
(108 letters)
Database: nr
14,124,377 sequences; 4,842,793,630 total letters
Searching..................................................done
Results from round 1
>gi|254781002|ref|YP_003065415.1| hypothetical protein CLIBASIA_04515 [Candidatus Liberibacter
asiaticus str. psy62]
gi|254040679|gb|ACT57475.1| hypothetical protein CLIBASIA_04515 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 108
Score = 215 bits (547), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 108/108 (100%), Positives = 108/108 (100%)
Query: 1 MMEMIFFAFVFTCILLLWCVFIGLIACWIVDRWEYFFIRRKYVLTAILLNYQFFYSLQTI 60
MMEMIFFAFVFTCILLLWCVFIGLIACWIVDRWEYFFIRRKYVLTAILLNYQFFYSLQTI
Sbjct: 1 MMEMIFFAFVFTCILLLWCVFIGLIACWIVDRWEYFFIRRKYVLTAILLNYQFFYSLQTI 60
Query: 61 FSVEHYTNPHSIILAFVWSILSFFITFWIFVASVSMGRRVIQYFKRSR 108
FSVEHYTNPHSIILAFVWSILSFFITFWIFVASVSMGRRVIQYFKRSR
Sbjct: 61 FSVEHYTNPHSIILAFVWSILSFFITFWIFVASVSMGRRVIQYFKRSR 108
>gi|195554718|ref|XP_002076949.1| GD24543 [Drosophila simulans]
gi|194202967|gb|EDX16543.1| GD24543 [Drosophila simulans]
Length = 344
Score = 36.2 bits (82), Expect = 1.6, Method: Composition-based stats.
Identities = 22/95 (23%), Positives = 45/95 (47%), Gaps = 14/95 (14%)
Query: 15 LLLW------CVFIGLIACWIVDRWEYFFIRRKYVLTAILLNYQFFYSLQTIFSVEHYTN 68
L+LW + GL ++ W ++++ +L +++ L +FSV + +
Sbjct: 124 LVLWRRPLQTTKYCGLELFTLLRTWSTRLVQQRVLLATLIV-------LSIVFSVIYKID 176
Query: 69 -PHSIILAFVWSILSFFITFWIFVASVSMGRRVIQ 102
PH + FV++ F + FW F + +G+ VI+
Sbjct: 177 GPHQFAIEFVFTCGHFLVPFWTFFGATLIGKAVIK 211
>gi|311029778|ref|ZP_07707868.1| hypothetical protein Bm3-1_04349 [Bacillus sp. m3-13]
Length = 110
Score = 33.5 bits (75), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 16 LLWCVFIGLIACWIVDRWEYFFIRRKYVLT-AILLNYQFFYSLQTIFSVEHYTNPHSIIL 74
L+ V IG++ +IV+R++ F RR+Y++ I Y TI +++ P +I
Sbjct: 28 LIVAVMIGIMFAFIVERFQLFDKRRQYLVAIGITSPTILLYFPLTILAIKETPAPTDVIA 87
Query: 75 AFVWSI 80
+WSI
Sbjct: 88 ILLWSI 93
>gi|305664907|ref|YP_003861194.1| hypothetical protein FB2170_01347 [Maribacter sp. HTCC2170]
gi|88707737|gb|EAQ99977.1| hypothetical protein FB2170_01347 [Maribacter sp. HTCC2170]
Length = 570
Score = 33.5 bits (75), Expect = 8.8, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 6/63 (9%)
Query: 36 FFIRRKYVLTAILLNYQFFYSLQTIFSVEHYTNPHSIILAFVWSILSFFITF--WIFVAS 93
+ ++ +LT L YQ F +T FSV N H +IL + ++L FIT ++ ++S
Sbjct: 7 YLLKASGILTIFYLAYQVFLKRETFFSV----NRHFLILGILTALLLPFITITNYVEISS 62
Query: 94 VSM 96
V M
Sbjct: 63 VPM 65
Searching..................................................done
Results from round 2
CONVERGED!
>gi|254781002|ref|YP_003065415.1| hypothetical protein CLIBASIA_04515 [Candidatus Liberibacter
asiaticus str. psy62]
gi|254040679|gb|ACT57475.1| hypothetical protein CLIBASIA_04515 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 108
Score = 136 bits (344), Expect = 8e-31, Method: Composition-based stats.
Identities = 108/108 (100%), Positives = 108/108 (100%)
Query: 1 MMEMIFFAFVFTCILLLWCVFIGLIACWIVDRWEYFFIRRKYVLTAILLNYQFFYSLQTI 60
MMEMIFFAFVFTCILLLWCVFIGLIACWIVDRWEYFFIRRKYVLTAILLNYQFFYSLQTI
Sbjct: 1 MMEMIFFAFVFTCILLLWCVFIGLIACWIVDRWEYFFIRRKYVLTAILLNYQFFYSLQTI 60
Query: 61 FSVEHYTNPHSIILAFVWSILSFFITFWIFVASVSMGRRVIQYFKRSR 108
FSVEHYTNPHSIILAFVWSILSFFITFWIFVASVSMGRRVIQYFKRSR
Sbjct: 61 FSVEHYTNPHSIILAFVWSILSFFITFWIFVASVSMGRRVIQYFKRSR 108
Database: nr
Posted date: May 22, 2011 12:22 AM
Number of letters in database: 999,999,966
Number of sequences in database: 2,987,313
Database: /data/usr2/db/fasta/nr.01
Posted date: May 22, 2011 12:30 AM
Number of letters in database: 999,999,796
Number of sequences in database: 2,903,041
Database: /data/usr2/db/fasta/nr.02
Posted date: May 22, 2011 12:36 AM
Number of letters in database: 999,999,281
Number of sequences in database: 2,904,016
Database: /data/usr2/db/fasta/nr.03
Posted date: May 22, 2011 12:41 AM
Number of letters in database: 999,999,960
Number of sequences in database: 2,935,328
Database: /data/usr2/db/fasta/nr.04
Posted date: May 22, 2011 12:46 AM
Number of letters in database: 842,794,627
Number of sequences in database: 2,394,679
Lambda K H
0.344 0.148 0.521
Lambda K H
0.267 0.0474 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,652,701,650
Number of Sequences: 14124377
Number of extensions: 131059012
Number of successful extensions: 869001
Number of sequences better than 10.0: 502
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 558
Number of HSP's that attempted gapping in prelim test: 868527
Number of HSP's gapped (non-prelim): 837
length of query: 108
length of database: 4,842,793,630
effective HSP length: 76
effective length of query: 32
effective length of database: 3,769,340,978
effective search space: 120618911296
effective search space used: 120618911296
T: 11
A: 40
X1: 16 ( 7.9 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.6 bits)
S2: 76 (33.7 bits)