BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254781002|ref|YP_003065415.1| hypothetical protein
CLIBASIA_04515 [Candidatus Liberibacter asiaticus str. psy62]
(108 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254781002|ref|YP_003065415.1| hypothetical protein CLIBASIA_04515 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 108
Score = 215 bits (547), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 108/108 (100%), Positives = 108/108 (100%)
Query: 1 MMEMIFFAFVFTCILLLWCVFIGLIACWIVDRWEYFFIRRKYVLTAILLNYQFFYSLQTI 60
MMEMIFFAFVFTCILLLWCVFIGLIACWIVDRWEYFFIRRKYVLTAILLNYQFFYSLQTI
Sbjct: 1 MMEMIFFAFVFTCILLLWCVFIGLIACWIVDRWEYFFIRRKYVLTAILLNYQFFYSLQTI 60
Query: 61 FSVEHYTNPHSIILAFVWSILSFFITFWIFVASVSMGRRVIQYFKRSR 108
FSVEHYTNPHSIILAFVWSILSFFITFWIFVASVSMGRRVIQYFKRSR
Sbjct: 61 FSVEHYTNPHSIILAFVWSILSFFITFWIFVASVSMGRRVIQYFKRSR 108
>gi|254780529|ref|YP_003064942.1| flagellar motor protein MotB [Candidatus Liberibacter asiaticus
str. psy62]
Length = 343
Score = 23.5 bits (49), Expect = 1.1, Method: Composition-based stats.
Identities = 10/30 (33%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 76 FVWSILSFFITFWIFVASVSMGRRVI-QYF 104
F+ +++FF+ WI A+ ++ I QYF
Sbjct: 40 FMTVLMAFFLVMWIINATDDDTKKAIEQYF 69
>gi|254780711|ref|YP_003065124.1| signal recognition particle protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 461
Score = 23.1 bits (48), Expect = 1.5, Method: Composition-based stats.
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 57 LQTIFSVEHYTNPHSIIL 74
+Q I ++ TNPH I+L
Sbjct: 202 MQEISEIKSLTNPHEILL 219
>gi|254781033|ref|YP_003065446.1| HemY domain-containing protein [Candidatus Liberibacter asiaticus
str. psy62]
Length = 492
Score = 21.9 bits (45), Expect = 3.0, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 11/59 (18%)
Query: 48 LLNYQFFYSLQ--TIFSVEHYTNPHSIILA---------FVWSILSFFITFWIFVASVS 95
L+ Y F SL + V HY SI + SIL FF+ WI + +VS
Sbjct: 4 LIRYFFVISLVICSFIIVSHYPEDVSITWGNRLYRTSPFVILSILYFFLFAWILLFAVS 62
>gi|254780867|ref|YP_003065280.1| NADH dehydrogenase subunit N [Candidatus Liberibacter asiaticus
str. psy62]
Length = 478
Score = 21.9 bits (45), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 22 IGLIACWIVDRWEYFFIRRKYVLTAILLNYQFF 54
IGL +I DR+ Y FI+ ++++I++ + F
Sbjct: 64 IGLGGAYISDRFSY-FIKAILLMSSIIIFIKMF 95
>gi|254780511|ref|YP_003064924.1| flagellar biosynthesis protein FliR [Candidatus Liberibacter
asiaticus str. psy62]
Length = 248
Score = 20.4 bits (41), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 6/10 (60%), Positives = 9/10 (90%)
Query: 22 IGLIACWIVD 31
IGL+A W++D
Sbjct: 131 IGLLALWVID 140
>gi|254780690|ref|YP_003065103.1| flagellar biosynthesis protein FlhB [Candidatus Liberibacter
asiaticus str. psy62]
Length = 354
Score = 20.4 bits (41), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 8/30 (26%), Positives = 18/30 (60%)
Query: 67 TNPHSIILAFVWSILSFFITFWIFVASVSM 96
NPHSI+ +++ I +F+A++++
Sbjct: 179 ANPHSILYHAFFTVRKVLIMILLFIATLTV 208
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.344 0.148 0.521
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,535
Number of Sequences: 1233
Number of extensions: 2490
Number of successful extensions: 22
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 12
Number of HSP's gapped (non-prelim): 13
length of query: 108
length of database: 328,796
effective HSP length: 62
effective length of query: 46
effective length of database: 252,350
effective search space: 11608100
effective search space used: 11608100
T: 11
A: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.6 bits)
S2: 32 (16.9 bits)