HHsearch alignment for GI: 254781003 and conserved domain: COG0708
>COG0708 XthA Exonuclease III [DNA replication, recombination, and repair].
Probab=99.96 E-value=5.9e-28 Score=170.81 Aligned_cols=230 Identities=15% Similarity=0.203 Sum_probs=131.1
Q ss_pred EEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCC--HHHHHHHHCCCCCEEEEECCCCCCC
Q ss_conf 69999830147886676667765310188999999999860898899995078--5799986033343078621455675
Q gi|254781003|r 24 VRLVSWNINTLSEQEGVSLWKNSVKRTTSDYTLLRQYAKNLDADIVFLQEMGS--YNAVAKVFPKNTWCIFYSTERLINH 101 (304)
Q Consensus 24 lrV~twNi~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~DIi~lQEv~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (304)
T Consensus 1 mkI~SwNVNgi----------------Rar~~~~~~~l~~~~pDVlclQEtK~~~~~fp~~~~~~~GY~~~~~~------ 58 (261)
T COG0708 1 MKIASWNVNGL----------------RARLKKLLDWLEEEQPDVLCLQETKAQDEQFPREELEALGYHHVFNH------ 58 (261)
T ss_pred CEEEEEEHHHH----------------HHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHCCCEEEEEC------
T ss_conf 90689830428----------------98999999999872999899974146766689767752795189952------
Q ss_pred CCCCCCCCCEEEEEEECCCEEEEE-EECCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEEEECCCCCCCCCCCHHHHHHH
Q ss_conf 432234463158998258526765-3012246765555556533699999829949999994067888775200002577
Q gi|254781003|r 102 SKRDSNNDIHTAIAVRKKNVRVLQ-QSYPLLGAKDSFSRAGNRRAVELLVEINGKKIWVLDIHLKSFCFLDSLENTYSPS 180 (304)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~v~n~Hl~~~~~~~~~~~~~~~~ 180 (304)
T Consensus 59 -----gqKgysGVailsr~~~~~v~~g~~~~~~~d~e-------~R~I~a~~~~--~~v~~~Y~PnG~~~~~~k------ 118 (261)
T COG0708 59 -----GQKGYSGVAILSKKPPDDVRRGFPGEEEDDEE-------GRVIEAEFDG--FRVINLYFPNGSSIGLEK------ 118 (261)
T ss_pred -----CCCCCCEEEEEECCCCHHHHCCCCCCCCCCCC-------CCEEEEEECC--EEEEEEECCCCCCCCCCC------
T ss_conf -----76773448999846830210279987665434-------7579999798--999999727999888710------
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCH-------------------HHHHHHHHCCCCCCCCCCCCC
Q ss_conf 8999999999999986303689809998026888776620-------------------468987522557531114456
Q gi|254781003|r 181 CSLLSQQAQWLKDWITQKKESLVPFVIAGDFNRKINYLGN-------------------NDDFWKTIDPNDSLIRFPKEK 241 (304)
Q Consensus 181 ~~~~~~q~~~l~~~~~~~~~~~~~vIi~GDfN~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~ 241 (304)
T Consensus 119 ~~yKl~f~~~l~~~l~~l~~~~~~~vl~GD~NIap~~iDv~~~~~~~~n~~~~~f~~eeR~~~~~ll~~G--~~D~~R~~ 196 (261)
T COG0708 119 FDYKLRFLDALRNYLEELLKKGKPVVLCGDFNIAPEEIDVANPKKRWLNEGNSGFLPEERAWFRRLLNAG--FVDTFRLF 196 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHCC--HHHHHHHH
T ss_conf 6789999999999999987459987996663117853212572555401688898989999999998753--06456764
Q ss_pred CCCCCCCCCCC---------CCCCEEEEEECCCHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEC
Q ss_conf 78765646688---------8201479998620431002472178641134554445555763438999849
Q gi|254781003|r 242 DSRCNANKNLR---------NKIPIDYFVMDQNAYKFLIQESFSEILYNEDDIKSRGKRLSDHCPISIDYDF 304 (304)
Q Consensus 242 ~~~~~~~~~~~---------~~~~iD~I~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SDH~PV~~~l~f 304 (304)
T Consensus 197 ~p~~~~YTwW~YR~~~~~~n~G~RID~~l~S~~L~~~~~~a~I~~-------~~rg~e~pSDHaPV~~e~~~ 261 (261)
T COG0708 197 HPEPEKYTWWDYRANAARRNRGWRIDYILVSPALADRLKDAGIDR-------EVRGWEKPSDHAPVWVELDL 261 (261)
T ss_pred CCCCCCCCCCCCCCCHHHHCCCEEEEEEEECHHHHHHHHHCCCCH-------HHHCCCCCCCCCCEEEEECC
T ss_conf 899996351256213056638606888971899998886668637-------88558888885757999629