HHsearch alignment for GI: 254781003 and conserved domain: COG0708

>COG0708 XthA Exonuclease III [DNA replication, recombination, and repair].
Probab=99.96  E-value=5.9e-28  Score=170.81  Aligned_cols=230  Identities=15%  Similarity=0.203  Sum_probs=131.1

Q ss_pred             EEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCC--HHHHHHHHCCCCCEEEEECCCCCCC
Q ss_conf             69999830147886676667765310188999999999860898899995078--5799986033343078621455675
Q gi|254781003|r   24 VRLVSWNINTLSEQEGVSLWKNSVKRTTSDYTLLRQYAKNLDADIVFLQEMGS--YNAVAKVFPKNTWCIFYSTERLINH  101 (304)
Q Consensus        24 lrV~twNi~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~DIi~lQEv~~--~~~~~~~~~~~~~~~~~~~~~~~~~  101 (304)
T Consensus         1 mkI~SwNVNgi----------------Rar~~~~~~~l~~~~pDVlclQEtK~~~~~fp~~~~~~~GY~~~~~~------   58 (261)
T COG0708           1 MKIASWNVNGL----------------RARLKKLLDWLEEEQPDVLCLQETKAQDEQFPREELEALGYHHVFNH------   58 (261)
T ss_pred             CEEEEEEHHHH----------------HHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHCCCEEEEEC------
T ss_conf             90689830428----------------98999999999872999899974146766689767752795189952------


Q ss_pred             CCCCCCCCCEEEEEEECCCEEEEE-EECCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEEEECCCCCCCCCCCHHHHHHH
Q ss_conf             432234463158998258526765-3012246765555556533699999829949999994067888775200002577
Q gi|254781003|r  102 SKRDSNNDIHTAIAVRKKNVRVLQ-QSYPLLGAKDSFSRAGNRRAVELLVEINGKKIWVLDIHLKSFCFLDSLENTYSPS  180 (304)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~v~n~Hl~~~~~~~~~~~~~~~~  180 (304)
T Consensus        59 -----gqKgysGVailsr~~~~~v~~g~~~~~~~d~e-------~R~I~a~~~~--~~v~~~Y~PnG~~~~~~k------  118 (261)
T COG0708          59 -----GQKGYSGVAILSKKPPDDVRRGFPGEEEDDEE-------GRVIEAEFDG--FRVINLYFPNGSSIGLEK------  118 (261)
T ss_pred             -----CCCCCCEEEEEECCCCHHHHCCCCCCCCCCCC-------CCEEEEEECC--EEEEEEECCCCCCCCCCC------
T ss_conf             -----76773448999846830210279987665434-------7579999798--999999727999888710------


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCH-------------------HHHHHHHHCCCCCCCCCCCCC
Q ss_conf             8999999999999986303689809998026888776620-------------------468987522557531114456
Q gi|254781003|r  181 CSLLSQQAQWLKDWITQKKESLVPFVIAGDFNRKINYLGN-------------------NDDFWKTIDPNDSLIRFPKEK  241 (304)
Q Consensus       181 ~~~~~~q~~~l~~~~~~~~~~~~~vIi~GDfN~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~  241 (304)
T Consensus       119 ~~yKl~f~~~l~~~l~~l~~~~~~~vl~GD~NIap~~iDv~~~~~~~~n~~~~~f~~eeR~~~~~ll~~G--~~D~~R~~  196 (261)
T COG0708         119 FDYKLRFLDALRNYLEELLKKGKPVVLCGDFNIAPEEIDVANPKKRWLNEGNSGFLPEERAWFRRLLNAG--FVDTFRLF  196 (261)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHCC--HHHHHHHH
T ss_conf             6789999999999999987459987996663117853212572555401688898989999999998753--06456764


Q ss_pred             CCCCCCCCCCC---------CCCCEEEEEECCCHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEC
Q ss_conf             78765646688---------8201479998620431002472178641134554445555763438999849
Q gi|254781003|r  242 DSRCNANKNLR---------NKIPIDYFVMDQNAYKFLIQESFSEILYNEDDIKSRGKRLSDHCPISIDYDF  304 (304)
Q Consensus       242 ~~~~~~~~~~~---------~~~~iD~I~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SDH~PV~~~l~f  304 (304)
T Consensus       197 ~p~~~~YTwW~YR~~~~~~n~G~RID~~l~S~~L~~~~~~a~I~~-------~~rg~e~pSDHaPV~~e~~~  261 (261)
T COG0708         197 HPEPEKYTWWDYRANAARRNRGWRIDYILVSPALADRLKDAGIDR-------EVRGWEKPSDHAPVWVELDL  261 (261)
T ss_pred             CCCCCCCCCCCCCCCHHHHCCCEEEEEEEECHHHHHHHHHCCCCH-------HHHCCCCCCCCCCEEEEECC
T ss_conf             899996351256213056638606888971899998886668637-------88558888885757999629