HHsearch alignment for GI: 254781003 and conserved domain: COG5239
>COG5239 CCR4 mRNA deadenylase, exonuclease subunit and related nucleases [RNA processing and modification].
Probab=99.86 E-value=9.2e-21 Score=131.50 Aligned_cols=275 Identities=18% Similarity=0.116 Sum_probs=143.6
Q ss_pred CEEEEEEEC--CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCHH---HHHHHHCCCCCEEEEECCC
Q ss_conf 269999830--14788667666776531018899999999986089889999507857---9998603334307862145
Q gi|254781003|r 23 KVRLVSWNI--NTLSEQEGVSLWKNSVKRTTSDYTLLRQYAKNLDADIVFLQEMGSYN---AVAKVFPKNTWCIFYSTER 97 (304)
Q Consensus 23 ~lrV~twNi--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~DIi~lQEv~~~~---~~~~~~~~~~~~~~~~~~~ 97 (304)
T Consensus 30 ~ftimTYN~Laq~y~~r~~y~~s-~~aL~W~~R~~~L~~EL~~Yn~Di~CLQEvd~~~~~~fw~~~l~~~gY~~if~~k~ 108 (378)
T COG5239 30 DFTIMTYNVLAQTYATRKMYPYS-GWALKWSYRSRLLLQELLYYNADILCLQEVDAEDFEDFWKDQLGKLGYDGIFIPKE 108 (378)
T ss_pred EEEEEEHHHHHHHHCCCCCCCCC-HHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHCCCCCCEEEECCC
T ss_conf 36998613534665333124775-55522378889999987403786566211336678888888733556432882589
Q ss_pred CCCCCCCC--CCCCCEEEEEEEC----CCEEEEEEECCCCCCCCCC--------------CCCCCCE----EEEEEEEEC
Q ss_conf 56754322--3446315899825----8526765301224676555--------------5556533----699999829
Q gi|254781003|r 98 LINHSKRD--SNNDIHTAIAVRK----KNVRVLQQSYPLLGAKDSF--------------SRAGNRR----AVELLVEIN 153 (304)
Q Consensus 98 ~~~~~~~~--~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~--------------~~~~~r~----~~~~~~~~~ 153 (304)
T Consensus 109 ~k~~~m~~~d~t~~dGc~if~k~~~~~sk~~li~~~~~~f~~p~~~~er~r~t~~~lnri~e~~~~~w~~l~~~l~n~e~ 188 (378)
T COG5239 109 RKVKWMIDYDTTKVDGCAIFLKRFIDSSKLGLILAVTHLFWHPYGYYERFRQTYILLNRIGEKDNIAWVCLFVGLFNKEP 188 (378)
T ss_pred CCCCCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHCCHHHEEEEECCCCC
T ss_conf 84442443334323038999875266101124324167640620010134677999999865431031320333215799
Q ss_pred CEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC-----------CCCCEEEEECCCCCCCCCCHHH
Q ss_conf 94999999406788877520000257789999999999999863036-----------8980999802688877662046
Q gi|254781003|r 154 GKKIWVLDIHLKSFCFLDSLENTYSPSCSLLSQQAQWLKDWITQKKE-----------SLVPFVIAGDFNRKINYLGNND 222 (304)
Q Consensus 154 ~~~~~v~n~Hl~~~~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~-----------~~~~vIi~GDfN~~~~~~~~~~ 222 (304)
T Consensus 189 gd~~~va~Th~~w~~~~~dvk~---iq~s~l~~~---~k~~~~e~~~~d~~~~d~k~~~~~~~l~~gd~ns~~~s~vy~~ 262 (378)
T COG5239 189 GDTPYVANTHLPWDPKYRDVKL---IQCSLLYRE---LKKVLKEELNDDKEEGDIKSYPEVDILITGDFNSLRASLVYKF 262 (378)
T ss_pred CCCEEEEECCCCCCCCCCCHHE---EHHHHHHHH---HHHHHHHCCCCCHHCCCCCCCCCCCCCCCCCCCCEECCEEHHH
T ss_conf 9830677011245677771210---024679999---9998642077410014545676554235787100003300145
Q ss_pred HHHHHHCCC--------------CCCCC---C--CCCCCCCCCCCCCCCCCCCEEEEEECCCHHHC-CCCCCEEEEEECC
Q ss_conf 898752255--------------75311---1--44567876564668882014799986204310-0247217864113
Q gi|254781003|r 223 DFWKTIDPN--------------DSLIR---F--PKEKDSRCNANKNLRNKIPIDYFVMDQNAYKF-LIQESFSEILYNE 282 (304)
Q Consensus 223 ~~~~~~~~~--------------~~~~~---~--~~~~~~~~~~~~~~~~~~~iD~I~~s~~~~~~-~~~~~~~~~~~~~ 282 (304)
T Consensus 263 l~~~~~q~H~~~~~~~~~lysvg~~~~h~~n~~~~~~~~~~~fTN~t~~~kG~iDYIfy~~~~~~~~~~~l~~ve~e~~~ 342 (378)
T COG5239 263 LVTSQIQLHESLNGRDFSLYSVGYKFVHPENLKSDNSKGELGFTNWTPGFKGVIDYIFYHGGLLTRQTGLLGVVEGEYAS 342 (378)
T ss_pred HHHHHHHHHHCCCCCCHHHHCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCEEEECCCCCCCCCHHH
T ss_conf 44079886410354432220155455584231557876876501356654542579998468610440455554510233
Q ss_pred C-CCCCCCCCCCCCCCEEEEEEC
Q ss_conf 4-554445555763438999849
Q gi|254781003|r 283 D-DIKSRGKRLSDHCPISIDYDF 304 (304)
Q Consensus 283 ~-~~~~~~~~~SDH~PV~~~l~f 304 (304)
T Consensus 343 k~~G~pn~~~pSdhipl~~ef~~ 365 (378)
T COG5239 343 KVIGLPNMPFPSDHIPLLAEFAS 365 (378)
T ss_pred HHCCCCCCCCCCCCCCCHHCCCC
T ss_conf 11056789995124400101344