HHsearch alignment for GI: 254781003 and conserved domain: KOG3873
>KOG3873 consensus.
Probab=99.86 E-value=1.4e-20 Score=130.56 Aligned_cols=260 Identities=16% Similarity=0.146 Sum_probs=151.9
Q ss_pred CCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHCCCCCEEEEECCCCC
Q ss_conf 78826999983014788667666776531018899999999986089889999507857999860333430786214556
Q gi|254781003|r 20 VAQKVRLVSWNINTLSEQEGVSLWKNSVKRTTSDYTLLRQYAKNLDADIVFLQEMGSYNAVAKVFPKNTWCIFYSTERLI 99 (304)
Q Consensus 20 ~~~~lrV~twNi~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~DIi~lQEv~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (304)
T Consensus 5 ~a~~lriltlN~Wgip~--------~Sk~-R~~Rm~~~g~~l~~E~yDiv~LQEvWs~eD~~~L~~~~ss~yP------y 69 (422)
T KOG3873 5 LALELRILTLNIWGIPY--------VSKD-RRHRMDAIGDELASEKYDIVSLQEVWSQEDFEYLQSGCSSVYP------Y 69 (422)
T ss_pred HHHEEEEEEEECCCCCC--------CCCH-HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCC------H
T ss_conf 32201346763125643--------4301-4788987767776355211428988878789999974364574------5
Q ss_pred CCCCCCCCCCCEEEEEEECCCEEEEEEECCCCCCCCCCCCCCCC---EEEEEEEEECCEEEEEEEECCCCCCCCCCCHHH
Q ss_conf 75432234463158998258526765301224676555555653---369999982994999999406788877520000
Q gi|254781003|r 100 NHSKRDSNNDIHTAIAVRKKNVRVLQQSYPLLGAKDSFSRAGNR---RAVELLVEINGKKIWVLDIHLKSFCFLDSLENT 176 (304)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r---~~~~~~~~~~~~~~~v~n~Hl~~~~~~~~~~~~ 176 (304)
T Consensus 70 sh~FHSGimGaGL~vfSK~PI~~t~~~~y~lNG~p~~i~rGDWf~GK~Vgl~~l~~~g~~v~~yntHLHAeY~rq~D--- 146 (422)
T KOG3873 70 SHYFHSGIMGAGLCVFSKHPILETLFHRYSLNGYPHAIHRGDWFGGKGVGLTVLLVGGRMVNLYNTHLHAEYDRQND--- 146 (422)
T ss_pred HHHHHCCCCCCCEEEEECCCHHHHHHHCCCCCCCCCEEEECCCCCCCEEEEEEEEECCEEEEEEEHHCCCCCCCCCC---
T ss_conf 77640245567458765375065542001417861024305633563268999953988855120002562235676---
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCHHH-------HHHHHHCCCC----CCCCC--------
Q ss_conf 2577899999999999998630368980999802688877662046-------8987522557----53111--------
Q gi|254781003|r 177 YSPSCSLLSQQAQWLKDWITQKKESLVPFVIAGDFNRKINYLGNND-------DFWKTIDPND----SLIRF-------- 237 (304)
Q Consensus 177 ~~~~~~~~~~q~~~l~~~~~~~~~~~~~vIi~GDfN~~~~~~~~~~-------~~~~~~~~~~----~~~~~-------- 237 (304)
T Consensus 147 --~YL~HR~~QAwdlaqfi~~t~q~~~vVI~~GDLN~~P~dl~~~ll~~a~l~daw~~~h~~q~e~~~~r~s~~~~l~~g 224 (422)
T KOG3873 147 --EYLCHRVAQAWDLAQFIRATRQNADVVILAGDLNMQPQDLGHKLLLSAGLVDAWTSLHLDQCESDSFRLSEDKELVEG 224 (422)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEEECCCHHHHHHHHCHHHHCCCCCCCCHHHHHHCC
T ss_conf --114678898999999999974478689994677888666661244403004567653324312752244524455328
Q ss_pred -CCCCCCCCCCCCCC--C--CCCCEEEEEECCCHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf -44567876564668--8--820147999862043100247217864113455444555576343899984
Q gi|254781003|r 238 -PKEKDSRCNANKNL--R--NKIPIDYFVMDQNAYKFLIQESFSEILYNEDDIKSRGKRLSDHCPISIDYD 303 (304)
Q Consensus 238 -~~~~~~~~~~~~~~--~--~~~~iD~I~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SDH~PV~~~l~ 303 (304)
T Consensus 225 ~tcd~~~N~y~~aqk~~ddp~~~RiDYvl~k~~~-~~~~~a~---~~~t~~rvP~~d~s~SDH~Al~a~L~ 291 (422)
T KOG3873 225 NTCDSPLNCYTSAQKREDDPLGKRIDYVLVKPGD-CNAKIAE---VEFTEPRVPGEDCSYSDHEALMATLK 291 (422)
T ss_pred CCCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCC-EEEEEEE---EEECCCCCCCCCCCCCCHHHHEEEEE
T ss_conf 7656751036678747887543156689973761-3787305---88547878999998420243436898