HHsearch alignment for GI: 254781003 and conserved domain: PRK11756
>PRK11756 exonuclease III; Provisional.
Probab=99.97 E-value=3.2e-29 Score=177.71 Aligned_cols=232 Identities=17% Similarity=0.184 Sum_probs=127.9
Q ss_pred EEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCHH--HHHHHHCCCCCEEEEECCCCCCC
Q ss_conf 6999983014788667666776531018899999999986089889999507857--99986033343078621455675
Q gi|254781003|r 24 VRLVSWNINTLSEQEGVSLWKNSVKRTTSDYTLLRQYAKNLDADIVFLQEMGSYN--AVAKVFPKNTWCIFYSTERLINH 101 (304)
Q Consensus 24 lrV~twNi~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~DIi~lQEv~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 101 (304)
T Consensus 1 MkI~SwNVNgiR----------------ar~~~l~~~l~~~~pDIlcLQEtK~~~~~~p~~~~~~~gY~~~~~~------ 58 (268)
T PRK11756 1 MKFVSFNINGLR----------------ARPHQLEAIIEKHQPDVIGLQETKVHDEMFPLEEVEALGYHVFYHG------ 58 (268)
T ss_pred CEEEEEEEHHHH----------------HHHHHHHHHHHHCCCCEEEEECCCCCHHHCCHHHHHHCCCEEEEEC------
T ss_conf 989999866686----------------7588899999777998999987738811289889852695899961------
Q ss_pred CCCCCCCCCEEEEEEECCCE-EEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEEEECCCCCCCCCCCHHHHHHH
Q ss_conf 43223446315899825852-67653012246765555556533699999829949999994067888775200002577
Q gi|254781003|r 102 SKRDSNNDIHTAIAVRKKNV-RVLQQSYPLLGAKDSFSRAGNRRAVELLVEINGKKIWVLDIHLKSFCFLDSLENTYSPS 180 (304)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~v~n~Hl~~~~~~~~~~~~~~~~ 180 (304)
T Consensus 59 ------~KgysGVAi~sk~~p~~v~~g~~~~----~-~d~egR-~i~~~~~~~~g~~~lin~Y~PnG~~~~~~~-----k 121 (268)
T PRK11756 59 ------QKGHYGVALLSKQTPIAVRKGFPTD----D-EEAQRR-IIMATIPTPNGNLTVINGYFPQGESRDHPT-----K 121 (268)
T ss_pred ------CCCCCCEEEEECCCCHHEEECCCCC----C-CCCCCC-EEEEEEECCCCCEEEEEEEECCCCCCCCHH-----H
T ss_conf ------6773444687236724458648888----5-444562-799999637762999998504888777256-----7
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCC----------------------HHHHHHHHHCCCCCCCCCC
Q ss_conf 899999999999998630368980999802688877662----------------------0468987522557531114
Q gi|254781003|r 181 CSLLSQQAQWLKDWITQKKESLVPFVIAGDFNRKINYLG----------------------NNDDFWKTIDPNDSLIRFP 238 (304)
Q Consensus 181 ~~~~~~q~~~l~~~~~~~~~~~~~vIi~GDfN~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~ 238 (304)
T Consensus 122 ~~~K~~f~~~l~~~l~~~~~~~k~vIi~GD~NVA~~~iDv~~~~~n~k~~~~~g~~~f~~eER~~~~~ll~--~G~vD~f 199 (268)
T PRK11756 122 FPAKRQFYQDLQNYLETELSPDNPLLIMGDMNISPTDLDIGIGEENRKRWLRTGKCSFLPEEREWLERLMD--WGLVDTF 199 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHCCCCCCCHHHHCCCCCCCCCHHHHHHHHHHCC--CCCEEEE
T ss_conf 78899999999999999764799589956434358343135740033553436865688899999862203--8968877
Q ss_pred CCCCCC-CCCCCCCC---------CCCCEEEEEECCCHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf 456787-65646688---------820147999862043100247217864113455444555576343899984
Q gi|254781003|r 239 KEKDSR-CNANKNLR---------NKIPIDYFVMDQNAYKFLIQESFSEILYNEDDIKSRGKRLSDHCPISIDYD 303 (304)
Q Consensus 239 ~~~~~~-~~~~~~~~---------~~~~iD~I~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SDH~PV~~~l~ 303 (304)
T Consensus 200 R~~~p~~~~~yTwW~yr~~a~~~n~G~RIDy~l~S~~l~~~v~~~~I~~-------~~rg~~~~SDH~PV~~~l~ 267 (268)
T PRK11756 200 RQLNPDVNDRFSWFDYRSKGFDDNRGLRIDLILATQPLAERCVETGIDY-------DIRGMEKPSDHAPIWATFK 267 (268)
T ss_pred EEECCCCCCCEEEECCCCCCCCCCCEEEEEEEEECHHHHHHHEEEEECH-------HHHCCCCCCCEEEEEEEEE
T ss_conf 2305899873687365568631487176899985999984530648518-------8827999998001899996