HHsearch alignment for GI: 254781003 and conserved domain: PRK11756

>PRK11756 exonuclease III; Provisional.
Probab=99.97  E-value=3.2e-29  Score=177.71  Aligned_cols=232  Identities=17%  Similarity=0.184  Sum_probs=127.9

Q ss_pred             EEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCHH--HHHHHHCCCCCEEEEECCCCCCC
Q ss_conf             6999983014788667666776531018899999999986089889999507857--99986033343078621455675
Q gi|254781003|r   24 VRLVSWNINTLSEQEGVSLWKNSVKRTTSDYTLLRQYAKNLDADIVFLQEMGSYN--AVAKVFPKNTWCIFYSTERLINH  101 (304)
Q Consensus        24 lrV~twNi~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~DIi~lQEv~~~~--~~~~~~~~~~~~~~~~~~~~~~~  101 (304)
T Consensus         1 MkI~SwNVNgiR----------------ar~~~l~~~l~~~~pDIlcLQEtK~~~~~~p~~~~~~~gY~~~~~~------   58 (268)
T PRK11756          1 MKFVSFNINGLR----------------ARPHQLEAIIEKHQPDVIGLQETKVHDEMFPLEEVEALGYHVFYHG------   58 (268)
T ss_pred             CEEEEEEEHHHH----------------HHHHHHHHHHHHCCCCEEEEECCCCCHHHCCHHHHHHCCCEEEEEC------
T ss_conf             989999866686----------------7588899999777998999987738811289889852695899961------


Q ss_pred             CCCCCCCCCEEEEEEECCCE-EEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEEEECCCCCCCCCCCHHHHHHH
Q ss_conf             43223446315899825852-67653012246765555556533699999829949999994067888775200002577
Q gi|254781003|r  102 SKRDSNNDIHTAIAVRKKNV-RVLQQSYPLLGAKDSFSRAGNRRAVELLVEINGKKIWVLDIHLKSFCFLDSLENTYSPS  180 (304)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~v~n~Hl~~~~~~~~~~~~~~~~  180 (304)
T Consensus        59 ------~KgysGVAi~sk~~p~~v~~g~~~~----~-~d~egR-~i~~~~~~~~g~~~lin~Y~PnG~~~~~~~-----k  121 (268)
T PRK11756         59 ------QKGHYGVALLSKQTPIAVRKGFPTD----D-EEAQRR-IIMATIPTPNGNLTVINGYFPQGESRDHPT-----K  121 (268)
T ss_pred             ------CCCCCCEEEEECCCCHHEEECCCCC----C-CCCCCC-EEEEEEECCCCCEEEEEEEECCCCCCCCHH-----H
T ss_conf             ------6773444687236724458648888----5-444562-799999637762999998504888777256-----7


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCC----------------------HHHHHHHHHCCCCCCCCCC
Q ss_conf             899999999999998630368980999802688877662----------------------0468987522557531114
Q gi|254781003|r  181 CSLLSQQAQWLKDWITQKKESLVPFVIAGDFNRKINYLG----------------------NNDDFWKTIDPNDSLIRFP  238 (304)
Q Consensus       181 ~~~~~~q~~~l~~~~~~~~~~~~~vIi~GDfN~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~  238 (304)
T Consensus       122 ~~~K~~f~~~l~~~l~~~~~~~k~vIi~GD~NVA~~~iDv~~~~~n~k~~~~~g~~~f~~eER~~~~~ll~--~G~vD~f  199 (268)
T PRK11756        122 FPAKRQFYQDLQNYLETELSPDNPLLIMGDMNISPTDLDIGIGEENRKRWLRTGKCSFLPEEREWLERLMD--WGLVDTF  199 (268)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHCCCCCCCHHHHCCCCCCCCCHHHHHHHHHHCC--CCCEEEE
T ss_conf             78899999999999999764799589956434358343135740033553436865688899999862203--8968877


Q ss_pred             CCCCCC-CCCCCCCC---------CCCCEEEEEECCCHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf             456787-65646688---------820147999862043100247217864113455444555576343899984
Q gi|254781003|r  239 KEKDSR-CNANKNLR---------NKIPIDYFVMDQNAYKFLIQESFSEILYNEDDIKSRGKRLSDHCPISIDYD  303 (304)
Q Consensus       239 ~~~~~~-~~~~~~~~---------~~~~iD~I~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SDH~PV~~~l~  303 (304)
T Consensus       200 R~~~p~~~~~yTwW~yr~~a~~~n~G~RIDy~l~S~~l~~~v~~~~I~~-------~~rg~~~~SDH~PV~~~l~  267 (268)
T PRK11756        200 RQLNPDVNDRFSWFDYRSKGFDDNRGLRIDLILATQPLAERCVETGIDY-------DIRGMEKPSDHAPIWATFK  267 (268)
T ss_pred             EEECCCCCCCEEEECCCCCCCCCCCEEEEEEEEECHHHHHHHEEEEECH-------HHHCCCCCCCEEEEEEEEE
T ss_conf             2305899873687365568631487176899985999984530648518-------8827999998001899996