HHsearch alignment for GI: 254781003 and conserved domain: TIGR00633
>TIGR00633 xth exodeoxyribonuclease III (xth); InterPro: IPR004808 All proteins in this family for which functions are known are 5' AP endonucleases that function in base excision repair and the repair of abasic sites in DNA.; GO: 0004518 nuclease activity, 0006281 DNA repair.
Probab=100.00 E-value=2.2e-33 Score=200.45 Aligned_cols=238 Identities=16% Similarity=0.245 Sum_probs=138.6
Q ss_pred EEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHH--HHHHHHHCCCEEEEEEC--CCHHHHHHHHCCCCCEEEEECCCCC
Q ss_conf 6999983014788667666776531018899999--99998608988999950--7857999860333430786214556
Q gi|254781003|r 24 VRLVSWNINTLSEQEGVSLWKNSVKRTTSDYTLL--RQYAKNLDADIVFLQEM--GSYNAVAKVFPKNTWCIFYSTERLI 99 (304)
Q Consensus 24 lrV~twNi~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~i~~~~~DIi~lQEv--~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (304)
T Consensus 1 mKiiSWNVNGlRA----------------~~~~~sfL~~l~~~~pDvLCLQETK~~~~~~p~~~~~~~GY~~~~~~~~~k 64 (279)
T TIGR00633 1 MKIISWNVNGLRA----------------RLKKLSFLDWLKEENPDVLCLQETKVADEQFPKELLEELGYHVFFHGAKKK 64 (279)
T ss_pred CCEEEEECCHHHH----------------HCCHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHCCCCCEEEEECCCC
T ss_conf 9168871123442----------------135112888986538978762200278776634666407981588414665
Q ss_pred CCCCCCCCCCCEEEEEEECCCE-EEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEEEECCCCCCCCCCC-HHHH
Q ss_conf 7543223446315899825852-6765301224676555555653369999982994999999406788877520-0002
Q gi|254781003|r 100 NHSKRDSNNDIHTAIAVRKKNV-RVLQQSYPLLGAKDSFSRAGNRRAVELLVEINGKKIWVLDIHLKSFCFLDSL-ENTY 177 (304)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~v~n~Hl~~~~~~~~~-~~~~ 177 (304)
T Consensus 65 --------k~Gy~GVA~~Sk~~P~~V~~G~g~~~~~D~eg----R~~i~~~i~a~f~~f~v~n~YvPNg~~~~~~~rl-- 130 (279)
T TIGR00633 65 --------KKGYSGVAILSKVEPLSVRYGFGVLEEHDEEG----RVIIMRVITAEFDGFYVVNVYVPNGGARGLETRL-- 130 (279)
T ss_pred --------CCCEEEEEEEECCCCCEEEECCCCCCCCCCCC----CEEEEEEEEEECCCEEEEEEEECCCCCCCCCCCH--
T ss_conf --------88513689986016320220687887210377----4653331010105479998776686113654462--
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCC--CCCEEEEECCCCCCCCCC----------------------HHHHHHHHHCCCCC
Q ss_conf 577899999999999998630368--980999802688877662----------------------04689875225575
Q gi|254781003|r 178 SPSCSLLSQQAQWLKDWITQKKES--LVPFVIAGDFNRKINYLG----------------------NNDDFWKTIDPNDS 233 (304)
Q Consensus 178 ~~~~~~~~~q~~~l~~~~~~~~~~--~~~vIi~GDfN~~~~~~~----------------------~~~~~~~~~~~~~~ 233 (304)
T Consensus 131 ----~Yk~~~w~~~~~~~~~~l~~~~~~pv~~cGD~NvAh~eiDl~~P~~NRKr~l~~~~~gF~~~ER~~~~~ll~~g-g 205 (279)
T TIGR00633 131 ----EYKLDFWEALLQYYLKELDASDGKPVIICGDLNVAHTEIDLANPKENRKRWLRKGNAGFTPEEREAFDELLEAG-G 205 (279)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCC-C
T ss_conf ----78889999999999999861799979998477889771124577502479988188987889999999998617-9
Q ss_pred CCCCCCCCCCCC-CCCCCCCC----------CCCEEEEEECCCHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEE
Q ss_conf 311144567876-56466888----------2014799986204310024721786411345544455557634389998
Q gi|254781003|r 234 LIRFPKEKDSRC-NANKNLRN----------KIPIDYFVMDQNAYKFLIQESFSEILYNEDDIKSRGKRLSDHCPISIDY 302 (304)
Q Consensus 234 ~~~~~~~~~~~~-~~~~~~~~----------~~~iD~I~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SDH~PV~~~l 302 (304)
T Consensus 206 f~DtFR~~~p~~~~~YTwW~YR~K~ar~~N~GWRiDy~l~s~~l~~~v~d~~I~~~-------~rg~ekPSDHcPi~l~~ 278 (279)
T TIGR00633 206 FVDTFRHFNPDTEGAYTWWDYRSKRARDRNRGWRIDYFLVSEPLAARVVDSYIDSE-------VRGMEKPSDHCPIVLEL 278 (279)
T ss_pred CEEEECCCCCCCCCCEEEEECCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHCCCH-------HHCCCCCCCCCCEEEEE
T ss_conf 64870365888797312540023677246734145326538689986510001303-------45278888735547775
Q ss_pred E
Q ss_conf 4
Q gi|254781003|r 303 D 303 (304)
Q Consensus 303 ~ 303 (304)
T Consensus 279 ~ 279 (279)
T TIGR00633 279 D 279 (279)
T ss_pred C
T ss_conf 9