HHsearch results for GI: 254781003 and protein with PDBid: 2ei9_A
>2ei9_A Non-LTR retrotransposon R1BMKS ORF2 protein; four layered alpha beta sandwich, gene regulation; 2.00A {Bombyx mori}
Probab=99.84 E-value=3.9e-19 Score=121.41 Aligned_cols=200 Identities=16% Similarity=0.153 Sum_probs=103.0
Q ss_pred CCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHCCCCCEEEEECCCCC
Q ss_conf 78826999983014788667666776531018899999999986089889999507857999860333430786214556
Q gi|254781003|r 20 VAQKVRLVSWNINTLSEQEGVSLWKNSVKRTTSDYTLLRQYAKNLDADIVFLQEMGSYNAVAKVFPKNTWCIFYSTERLI 99 (304)
Q Consensus 20 ~~~~lrV~twNi~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~DIi~lQEv~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (304)
...+|||++||+++. ..+.+.|.++++..++|||||||.... .++..
T Consensus 4 ~~~~LrI~~~N~~~~----------------~~~~~~l~~~~~~~~~DIv~lQE~~~~---------~~~~~-------- 50 (240)
T 2ei9_A 4 IRPRLRIGQINLGGA----------------EDATRELPSIARDLGLDIVLVQEQYSM---------VGFLA-------- 50 (240)
T ss_dssp --CEEEEEEEECTTC----------------HHHHHTHHHHHHHHTCSEEEEESCCTT---------SSSEE--------
T ss_pred CCCCCEEEEEECCCC----------------HHHHHHHHHHHHHHCCCEEEEECCCCC---------CCCCC--------
T ss_conf 778368999807984----------------889999999999759999999655607---------88502--------
Q ss_pred CCCCCCCCCCCEEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEEEECCCCCCCCCCCHHHHHH
Q ss_conf 75432234463158998258526765301224676555555653369999982994999999406788877520000257
Q gi|254781003|r 100 NHSKRDSNNDIHTAIAVRKKNVRVLQQSYPLLGAKDSFSRAGNRRAVELLVEINGKKIWVLDIHLKSFCFLDSLENTYSP 179 (304)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~v~n~Hl~~~~~~~~~~~~~~~ 179 (304)
......+.++.++.+........ . .. ...+ +.+..++..+.++++|+++....+
T Consensus 51 -----~~~~~~g~ai~v~~~~~~~~~~~--~------~~---~~~~--~~~~~~~~~~~i~svY~pp~~~~~-------- 104 (240)
T 2ei9_A 51 -----QCGAHPKAGVYIRNRVLPCAVLH--H------LS---STHI--TVVHIGGWDLYMVSAYFQYSDPID-------- 104 (240)
T ss_dssp -----CCSSSCSEEEEESSTTSCEEECG--G------GC---CSSE--EEEEETTTTEEEEEEECCTTSCSH--------
T ss_pred -----EECCCCCEEEEEECCCCCCCCCC--C------CC---CCCE--EEEEECCEEEEEEEEECCCCCCHH--------
T ss_conf -----24589968999956875532101--4------78---6657--999979928999999849798558--------
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCH-----------HHH----HHHHHCCCCCCCCCCCCCCCC
Q ss_conf 78999999999999986303689809998026888776620-----------468----987522557531114456787
Q gi|254781003|r 180 SCSLLSQQAQWLKDWITQKKESLVPFVIAGDFNRKINYLGN-----------NDD----FWKTIDPNDSLIRFPKEKDSR 244 (304)
Q Consensus 180 ~~~~~~~q~~~l~~~~~~~~~~~~~vIi~GDfN~~~~~~~~-----------~~~----~~~~~~~~~~~~~~~~~~~~~ 244 (304)
.. ...+...+.. ..+.++|++||||.....-.. .+. +...... ..+..... ...
T Consensus 105 ---~~---~~~l~~~~~~--~~~~~~ii~GDfN~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~l~~~~~--~~~ 173 (240)
T 2ei9_A 105 ---PY---LHRLGNILDR--LRGARVVICADTNAHSPLWHSLPRHYVGRGQEVADRRAKMEDFIGA-RRLVVHNA--DGH 173 (240)
T ss_dssp ---HH---HHHHHHHHHH--TTTSCEEEEEECCCCCGGGTCCHHHHSSSCHHHHHHHHHHHHHHHH-TTCEECCC--TTC
T ss_pred ---HH---HHHHHHHHHH--CCCCCEEEECHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH-CCEEEECC--CCC
T ss_conf ---99---9999999986--6999669830110456000465434445555442335568876531-55177315--788
Q ss_pred CCCCCCCCCCCCEEEEEECCCHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf 65646688820147999862043100247217864113455444555576343899984
Q gi|254781003|r 245 CNANKNLRNKIPIDYFVMDQNAYKFLIQESFSEILYNEDDIKSRGKRLSDHCPISIDYD 303 (304)
Q Consensus 245 ~~~~~~~~~~~~iD~I~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SDH~PV~~~l~ 303 (304)
..++.......+|||+|+++.... . ...+. .. ..|||+||.++|.
T Consensus 174 ~~Tf~~~~~~~~ID~~~~s~~~~~--~--~~~v~-------~~---~~SDH~~I~~~l~ 218 (240)
T 2ei9_A 174 LPTFSTANGESYVDVTLSTRGVRV--S--EWRVT-------NE---SSSDHRLIVFGVG 218 (240)
T ss_dssp CCSEEETTEEECCEEEEECTTCCE--E--EEEEC-------SC---CSSSBCCEEEEEE
T ss_pred CEECCCCCCCCEECEEEECCCEEE--E--EEEEC-------CC---CCCCCHHEEEEEE
T ss_conf 201668998878464980797016--6--58966-------89---9999545699997