HHsearch results for GI: 254781003 and protein with PDBid: 2voa_A
>2voa_A AF_EXO, XTHA, exodeoxyribonuclease III; EXOIII, AP endonuclease, lyase; 1.7A {Archaeoglobus fulgidus}
Probab=99.91 E-value=1.2e-22 Score=140.61 Aligned_cols=228 Identities=17% Similarity=0.135 Sum_probs=100.5
Q ss_pred EEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCH--HHHHHHHCCCCCEEEEECCCCCCC
Q ss_conf 699998301478866766677653101889999999998608988999950785--799986033343078621455675
Q gi|254781003|r 24 VRLVSWNINTLSEQEGVSLWKNSVKRTTSDYTLLRQYAKNLDADIVFLQEMGSY--NAVAKVFPKNTWCIFYSTERLINH 101 (304)
Q Consensus 24 lrV~twNi~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~DIi~lQEv~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 101 (304)
+|||||||+++. .+.+.++++|++.+|||||||||... ..........++......
T Consensus 2 mKI~T~NvnG~r----------------~r~~~~~~~i~~~~pDIi~lQEvk~~~~~~~~~~~~~~~~~~~~~~------ 59 (257)
T 2voa_A 2 LKIATFNVNSIR----------------SRLHIVIPWLKENKPDILCMQETKVENRKFPEADFHRIGYHVVFSG------ 59 (257)
T ss_dssp EEEEEEECSCGG----------------GTHHHHHHHHHHHCCSEEEEECCCCCGGGCCHHHHHTTTCEEEEEE------
T ss_pred EEEEEEEECHHH----------------HHHHHHHHHHHHCCCCEEEEEECCCCHHHCCHHHHHHCCCEEEECC------
T ss_conf 199999805299----------------8699889999868996999996766924478878731363146503------
Q ss_pred CCCCCCCCCEEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEEEECCCCCCCCCCCHHHHHHHH
Q ss_conf 43223446315899825852676530122467655555565336999998299499999940678887752000025778
Q gi|254781003|r 102 SKRDSNNDIHTAIAVRKKNVRVLQQSYPLLGAKDSFSRAGNRRAVELLVEINGKKIWVLDIHLKSFCFLDSLENTYSPSC 181 (304)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~v~n~Hl~~~~~~~~~~~~~~~~~ 181 (304)
........+..+.+........... ..+. .+. ..... ..+.++.+|+......+.....
T Consensus 60 ----~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-----~~~---~~~~~--~~~~~~~~~~~~~~~~~~~~~~----- 118 (257)
T 2voa_A 60 ----SKGRNGVAIASLEEPEDVSFGLDSE--PKDE-----DRL---IRAKI--AGIDVINTYVPQGFKIDSEKYQ----- 118 (257)
T ss_dssp ----ETTEEEEEEEESSCCEEEEESCSSS--SCCG-----GGE---EEEEE--TTEEEEEEECCCCSCTTSHHHH-----
T ss_pred ----CCCCCCCEEEECCCCEEEEECCCCC--CCCC-----CEE---EEEEE--CCEEEEEEEEECCCCCCHHHHH-----
T ss_conf ----4776661133047850588424212--3566-----458---99872--6759999983068779768888-----
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCHH---------------HHHHHHHCCCCCCCCCC-----CCC
Q ss_conf 9999999999999863036898099980268887766204---------------68987522557531114-----456
Q gi|254781003|r 182 SLLSQQAQWLKDWITQKKESLVPFVIAGDFNRKINYLGNN---------------DDFWKTIDPNDSLIRFP-----KEK 241 (304)
Q Consensus 182 ~~~~~q~~~l~~~~~~~~~~~~~vIi~GDfN~~~~~~~~~---------------~~~~~~~~~~~~~~~~~-----~~~ 241 (304)
..... ................+++++||||......... ......+.. ..+.+.. ...
T Consensus 119 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~gl~D~~r~~~~~~~ 196 (257)
T 2voa_A 119 YKLQW-LERLYHYLQKTVDFRSFAVWCGDMNVAPEPIDVHSPDKLKNHVCFHEDARRAYKKILE-LGFVDVLRKIHPNER 196 (257)
T ss_dssp HHHHH-HHHHHHHHHHHCCTTSCEEEEEECSCCCSGGGBSCGGGCTTSTTTCHHHHHHHHHHHT-TTCEEHHHHHSTTCC
T ss_pred HHHHH-HHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHCCCHHHCCCCCCCCHHHHHHHHHHHH-CCCCCHHHHHCCCCC
T ss_conf 88877-8999999998664202323333101384064335804334666578899999999987-688120154379998
Q ss_pred CCCCCCCCC-----CCCCCCEEEEEECCCHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf 787656466-----88820147999862043100247217864113455444555576343899984
Q gi|254781003|r 242 DSRCNANKN-----LRNKIPIDYFVMDQNAYKFLIQESFSEILYNEDDIKSRGKRLSDHCPISIDYD 303 (304)
Q Consensus 242 ~~~~~~~~~-----~~~~~~iD~I~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SDH~PV~~~l~ 303 (304)
...++.+.. .....||||||+|+++........ ....+..+..+|||+||+++|+
T Consensus 197 ~~~~~~~~~~~~~~~~~g~RIDyIl~s~~l~~~~~~~~-------v~~~~~~~~~~SDH~PV~~~l~ 256 (257)
T 2voa_A 197 IYTFYDYRVKGAIERGLGWRGDAILATPPLAERCVDCY-------ADIKPRLAEKPSDHLPLVAVFD 256 (257)
T ss_dssp CCSBCCTTSTTTTTTTCCBCCEEEEECHHHHTTEEEEE-------ECCHHHHSSSCCSBCCEEEEEC
T ss_pred CCCCCCCCCCCCCCCCCCEEEEEEEECHHHHHHHCEEE-------EEEEECCCCCCCCCEEEEEEEE
T ss_conf 63106765787434799677799997869986520899-------8651047999998237999998