HHsearch results for GI: 254781003 and protein with PDBid: 3i41_A
>3i41_A Beta-hemolysin; beta toxin, sphingomyelinase, toxin; 1.75A {Staphylococcus aureus RN4220} PDB: 3i46_A 3i48_A
Probab=100.00 E-value=1.2e-34 Score=206.15 Aligned_cols=272 Identities=17% Similarity=0.081 Sum_probs=144.2
Q ss_pred CCCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHCCCC--CEEEEE--
Q ss_conf 6788269999830147886676667765310188999999999860898899995078579998603334--307862--
Q gi|254781003|r 19 SVAQKVRLVSWNINTLSEQEGVSLWKNSVKRTTSDYTLLRQYAKNLDADIVFLQEMGSYNAVAKVFPKNT--WCIFYS-- 94 (304)
Q Consensus 19 ~~~~~lrV~twNi~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~DIi~lQEv~~~~~~~~~~~~~~--~~~~~~-- 94 (304)
.....||||||||+.++... ........+.+.|++.|...+|||||||||.+......+..... |.....
T Consensus 25 ~~~~~lrv~syNi~~~~~~~------~~~~~~~~R~~~i~~~i~~~~~DII~LQEV~~~~~~~~l~~~l~~~~~~~~~~~ 98 (317)
T 3i41_A 25 KDDTDLKLVSHNVYMLSTVL------YPNWGQYKRADLIGQSSYIKNNDVVIFNEAFDNGASDKLLSNVKKEYPYQTPVL 98 (317)
T ss_dssp ---CCCCEEEEEEEECCTTT------STTSCHHHHHHHHHHCSTTSSCSEEEEEEECSHHHHHHHHHHTTTTCCEECCCT
T ss_pred CCCCCEEEEEEECCCCCCCC------CCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEE
T ss_conf 88996899985288876666------787068899999999997669998999867673549999998886589467760
Q ss_pred CCCCCCCC----CCCCCCCCEEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEEEECCCCCCCC
Q ss_conf 14556754----32234463158998258526765301224676555555653369999982994999999406788877
Q gi|254781003|r 95 TERLINHS----KRDSNNDIHTAIAVRKKNVRVLQQSYPLLGAKDSFSRAGNRRAVELLVEINGKKIWVLDIHLKSFCFL 170 (304)
Q Consensus 95 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~v~n~Hl~~~~~~ 170 (304)
........ ..........|+++.++.+........... .........|.+..+.+..++..++++|+||.++...
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~g~~ilSr~pi~~~~~~~~~~-~~~~~~~~~r~~~~~~~~~~~~~~~v~ntHl~~~~~~ 177 (317)
T 3i41_A 99 GRSQSGWDKTEGSYSSTVAEDGGVAIVSKYPIKEKIQHVFKS-GCGFDNDSNKGFVYTKIEKNGKNVHVIGTHTQSEDSR 177 (317)
T ss_dssp TSCSTTCSEEEESCCSSCSBCCCCEEEESSCEEEEEEEECSC-CCSSGGGBCCEEEEEEEEETTEEEEEEEEECCCCCSS
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEEEEECCC-CCCCCCCCCCCEEEEEEECCCEEEEEEEECCCCCCCC
T ss_conf 466543333224445554247737999858830058897367-8884101474469999962997999997435556775
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCCEEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCC-C---
Q ss_conf 52000025778999999999999986303-689809998026888776620468987522557531114456787-6---
Q gi|254781003|r 171 DSLENTYSPSCSLLSQQAQWLKDWITQKK-ESLVPFVIAGDFNRKINYLGNNDDFWKTIDPNDSLIRFPKEKDSR-C--- 245 (304)
Q Consensus 171 ~~~~~~~~~~~~~~~~q~~~l~~~~~~~~-~~~~~vIi~GDfN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--- 245 (304)
... ......+..|++.+..++.... ..+.++|+|||||..+.......... .................. .
T Consensus 178 ~~~----~~~~~~R~~q~~~i~~~~~~~~~~~~~~vil~GDfN~~~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~~~~~~ 252 (317)
T 3i41_A 178 CGA----GHDRKIRAEQMKEISDFVKKKNIPKDETVYIGGDLNVNKGTPEFKDMLK-NLNVNDVLYAGHNSTWDPQSNSI 252 (317)
T ss_dssp SCT----THHHHHHHHHHHHHHHHHHHHTCCTTSCEEEEEECCCCTTSHHHHHHHH-HHTBCCCEEEECSCSBCTTTCHH
T ss_pred CHH----HHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCHHHHHHHH-HCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 205----6789999999999998665540146675798444788988779999998-66986530014776545765765
Q ss_pred -CCCCCCCCCCCEEEEEECCCHHHCCCCCCEEEEE------ECCCCCCCCCCCCCCCCCEEEEE
Q ss_conf -5646688820147999862043100247217864------11345544455557634389998
Q gi|254781003|r 246 -NANKNLRNKIPIDYFVMDQNAYKFLIQESFSEIL------YNEDDIKSRGKRLSDHCPISIDY 302 (304)
Q Consensus 246 -~~~~~~~~~~~iD~I~~s~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~SDH~PV~~~l 302 (304)
........+.||||||++++.............. ............+|||+||++-+
T Consensus 253 ~~~~~~~~~~~riDyI~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SDH~PV~A~~ 316 (317)
T 3i41_A 253 AKYNYPNGKPEHLDYIFTDKDHKQPKQLVNEVVTEKPKPWDVYAAAYYYVYNDFSDHYPIKAYS 316 (317)
T ss_dssp HHHHCTTCCCBCCEEEEEBTTSCCCSSEEEEECCCCCSCEEEEETTEEEEECCSSSBCCEEEEE
T ss_pred CCCCCCCCCCCEEEEEEEECCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEE
T ss_conf 5656578987148899975740264311004886236631012444567789967610648993