Query gi|254781003|ref|YP_003065416.1| hypothetical protein CLIBASIA_04520 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 304 No_of_seqs 132 out of 2576 Neff 11.2 Searched_HMMs 13730 Date Wed Jun 1 11:08:33 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781003.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1zwxa1 d.151.1.3 (A:41-333) S 100.0 1.2E-34 8.8E-39 204.9 25.6 271 21-303 2-293 (293) 2 d2ddra1 d.151.1.3 (A:7-305) Sp 100.0 2.5E-33 1.8E-37 197.7 25.4 273 21-304 1-299 (299) 3 d2a40b1 d.151.1.1 (B:1-260) De 100.0 4.2E-29 3.1E-33 174.6 17.7 246 24-303 1-260 (260) 4 d2f1na1 d.151.1.1 (A:1-250) Cy 99.9 3.9E-28 2.9E-32 169.3 10.5 234 22-301 3-249 (250) 5 d1vyba_ d.151.1.1 (A:) Endonuc 99.9 1.3E-25 9.7E-30 155.5 21.4 222 20-303 2-236 (236) 6 d2imqx1 d.151.1.2 (X:3-282) Sa 99.9 1.2E-25 9.1E-30 155.6 14.8 240 18-303 1-277 (280) 7 d1wdua_ d.151.1.1 (A:) Endonuc 99.9 1.3E-23 9.4E-28 144.6 22.7 218 23-304 2-226 (228) 8 d1sr4b_ d.151.1.1 (B:) Cytolet 99.9 2.4E-25 1.7E-29 154.1 13.7 245 22-303 3-260 (261) 9 d1hd7a_ d.151.1.1 (A:) DNA rep 99.9 2.1E-23 1.5E-27 143.5 17.2 233 19-303 14-274 (275) 10 d1akoa_ d.151.1.1 (A:) DNA-rep 99.9 1.5E-20 1.1E-24 127.8 18.7 233 24-303 1-267 (268) 11 d1i9za_ d.151.1.2 (A:) Synapto 99.9 2.3E-19 1.7E-23 121.4 22.1 141 140-304 143-315 (345) No 1 >d1zwxa1 d.151.1.3 (A:41-333) Sphingomyelin phosphodiesterase C {Listeria ivanovii [TaxId: 1638]} Probab=100.00 E-value=1.2e-34 Score=204.86 Aligned_cols=271 Identities=14% Similarity=0.028 Sum_probs=148.0 Q ss_pred CCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHCCCC--CEEEEECCCC Q ss_conf 88269999830147886676667765310188999999999860898899995078579998603334--3078621455 Q gi|254781003|r 21 AQKVRLVSWNINTLSEQEGVSLWKNSVKRTTSDYTLLRQYAKNLDADIVFLQEMGSYNAVAKVFPKNT--WCIFYSTERL 98 (304) Q Consensus 21 ~~~lrV~twNi~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~DIi~lQEv~~~~~~~~~~~~~~--~~~~~~~~~~ 98 (304) ++.||||||||++++.... +......+.+.|++.|...+|||||||||.+......+..... |......... T Consensus 2 ~~~lki~s~Nv~~~~~~~~------~~~~~~~r~~~i~~~i~~~~~DVi~LQEv~~~~~~~~l~~~~~~~~~~~~~~~~~ 75 (293) T d1zwxa1 2 PGNFKITSHNVYLFSRNIY------PNWGQMHRADLIAQADYMKNNDVVILNEAFDTSASHRLLNNLREMYPHQTPVIGR 75 (293) T ss_dssp CCSCEEEEEEEEECCTTTS------TTSCHHHHHHHHHTSGGGSSCSEEEEEEECSHHHHHHHHHHTTTTCCEECCCTTS T ss_pred CCCCEEEEEECCCCCCCCC------CCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEHHCCC T ss_conf 9977899884685765558------9827899999999999756998899984677425899998776541400000113 Q ss_pred CCCCCC------CCCCCCEEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEEEECCCCCCCCCC Q ss_conf 675432------23446315899825852676530122467655555565336999998299499999940678887752 Q gi|254781003|r 99 INHSKR------DSNNDIHTAIAVRKKNVRVLQQSYPLLGAKDSFSRAGNRRAVELLVEINGKKIWVLDIHLKSFCFLDS 172 (304) Q Consensus 99 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~v~n~Hl~~~~~~~~ 172 (304) ...... ........|+++.++.+........... .........+..+.+.+..++..++++++|++++..... T Consensus 76 ~~~~~~~~~~~~~~~~~~~~g~~ilsr~pi~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Hl~~~~~~~~ 154 (293) T d1zwxa1 76 SKHGWDKTEGNYSNFALEDGGVAVVSQWPIVEKSQHIFQR-GGGADRLSNKGFAYVKIMKNGKPYHIIGTHTQADDSLIS 154 (293) T ss_dssp CSTTCSEEEC-----CCBCCCCEEEESSCEEEEEEEECSC-CCGGGGGBCCEEEEEEEEETTEEEEEEEEECCCCCTTSC T ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEEEC-CCCCCCCCCCEEEEEEEECCCCEEEEEEEEEECCCCCCC T ss_conf 4543221114544320126626999646754421565202-454200134148999996399347999844103677530 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCCEEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCC-CCCCCCCC----- Q ss_conf 000025778999999999999986303-68980999802688877662046898752255753111-44567876----- Q gi|254781003|r 173 LENTYSPSCSLLSQQAQWLKDWITQKK-ESLVPFVIAGDFNRKINYLGNNDDFWKTIDPNDSLIRF-PKEKDSRC----- 245 (304) Q Consensus 173 ~~~~~~~~~~~~~~q~~~l~~~~~~~~-~~~~~vIi~GDfN~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~----- 245 (304) . ......+..|++.+.+++.+.. ..+.++|||||||..+........... .......... ........ T Consensus 155 ~----~~~~~~r~~~~~~~~~~~~~~~~~~~~~vil~GDfN~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 229 (293) T d1zwxa1 155 K----DTSRAIRAEQMQEIQTFIAKKNIPKDEIIFIGGDLNVNYGTDEYHDMLKL-LNVSSPANFNGQMATWDPTTNSML 229 (293) T ss_dssp H----HHHHHHHHHHHHHHHHHHHHHTCCTTSEEEEEEECCCCTTSHHHHHHHHH-HTBCCCTTCCTTSCSBCTTTCHHH T ss_pred H----HHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHHH-CCCCCHHHCCCCCCCCCCCCCCCC T ss_conf 3----57799999989886545554036889848998066989885578888753-365553230467764455324444 Q ss_pred CCCCCCCCCCCEEEEEECCCHHHCCCCCCEEEEE------ECCCCCCCCCCCCCCCCCEEEEEE Q ss_conf 5646688820147999862043100247217864------113455444555576343899984 Q gi|254781003|r 246 NANKNLRNKIPIDYFVMDQNAYKFLIQESFSEIL------YNEDDIKSRGKRLSDHCPISIDYD 303 (304) Q Consensus 246 ~~~~~~~~~~~iD~I~~s~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~SDH~PV~~~l~ 303 (304) ........+.||||||++++.............. ............+|||+||+++++ T Consensus 230 ~~~~~~~~~~~iD~I~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SDH~PV~A~~~ 293 (293) T d1zwxa1 230 KESYPKAAPEYLDYIFVENGHARPHSWHNKVLHTKSPQWSVKSWFKTYTYQDFSDHYPVVGFTD 293 (293) T ss_dssp HHHCTTSCCBCCEEEEEBTTSCCCSCEEEEECCCCCCCEEEEETTEEEEECCSSSSCCEEEEEC T ss_pred CCCCCCCCCCEEEEEEEECCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEC T ss_conf 5455789886078999846303643222047752166301134335688899488178499959 No 2 >d2ddra1 d.151.1.3 (A:7-305) Sphingomyelin phosphodiesterase C {Bacillus cereus [TaxId: 1396]} Probab=100.00 E-value=2.5e-33 Score=197.66 Aligned_cols=273 Identities=15% Similarity=0.090 Sum_probs=142.2 Q ss_pred CCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHCCC--CCEEEEECC-- Q ss_conf 8826999983014788667666776531018899999999986089889999507857999860333--430786214-- Q gi|254781003|r 21 AQKVRLVSWNINTLSEQEGVSLWKNSVKRTTSDYTLLRQYAKNLDADIVFLQEMGSYNAVAKVFPKN--TWCIFYSTE-- 96 (304) Q Consensus 21 ~~~lrV~twNi~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~DIi~lQEv~~~~~~~~~~~~~--~~~~~~~~~-- 96 (304) .++||||||||++|.... .+......+.+.|++.+...+|||||||||.+......+.... .|....... T Consensus 1 ~~tl~v~s~Nv~~~~~~~------~~~~~~~~r~~~i~~~i~~~~~DIi~LQEv~~~~~~~~~~~~l~~~~~~~~~~~~~ 74 (299) T d2ddra1 1 NDTLKVMTHNVYMLSTNL------YPNWGQTERADLIGAADYIKNQDVVILNEVFDNSASDRLLGNLKKEYPNQTAVLGR 74 (299) T ss_dssp CCEEEEEEEEEEECCTTT------CTTSCHHHHHHHHHHCSTTCSCSEEEEEEECCHHHHHHHHHHHTTTCCEECCCTTS T ss_pred CCCEEEEEEECCCCCCCC------CCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEECCC T ss_conf 996699987788465466------88727889999999998756998899992677652788888888756740332134 Q ss_pred CCCCC-----CCCCCCCCCEEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEEEECCCCCCCCC Q ss_conf 55675-----4322344631589982585267653012246765555556533699999829949999994067888775 Q gi|254781003|r 97 RLINH-----SKRDSNNDIHTAIAVRKKNVRVLQQSYPLLGAKDSFSRAGNRRAVELLVEINGKKIWVLDIHLKSFCFLD 171 (304) Q Consensus 97 ~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~v~n~Hl~~~~~~~ 171 (304) ..... ...........|+++.++.+............ ........+.++.+....++..++++|+|++++.... T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~g~~~~s~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~Hl~~~~~~~ 153 (299) T d2ddra1 75 SSGSEWDKTLGNYSSSTPEDGGVAIVSKWPIAEKIQYVFAKG-CGPDNLSNKGFVYTKIKKNDRFVHVIGTHLQAEDSMC 153 (299) T ss_dssp CCSTTSSEEEESCCTTCSSCCCCEEEESSCEEEEEEEECSCC-C----CCCCEEEEEEEEETTEEEEEEEEECCCC---- T ss_pred CCCCCCCEEEECCCCCCCCCCEEEEEEEEECCCCEEEEEECC-CCCCCCCCEEEEEEEEECCCEEEEEEECCCCCCCCCC T ss_conf 555555402301234310264169999861113134553113-5755434206999998069808999972466787753 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHH-CCCCCCCEEEEECCCCCCCCCCHHH-----HHHHHHCCCCCCCCCCCCCC--- Q ss_conf 20000257789999999999999863-0368980999802688877662046-----89875225575311144567--- Q gi|254781003|r 172 SLENTYSPSCSLLSQQAQWLKDWITQ-KKESLVPFVIAGDFNRKINYLGNND-----DFWKTIDPNDSLIRFPKEKD--- 242 (304) Q Consensus 172 ~~~~~~~~~~~~~~~q~~~l~~~~~~-~~~~~~~vIi~GDfN~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~--- 242 (304) .. ......+..|++.+...+.. ....+.|+|+|||||..+....... .....+............+. T Consensus 154 ~~----~~~~~~r~~q~~~~~~~~~~~~~~~~~~vi~~GDfN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~ 229 (299) T d2ddra1 154 GK----TSPASVRTNQLKEIQDFIKNKNIPNNEYVLIGGDMNVNKINAENNNDSEYASMFKTLNASVPSYTGHTATWDAT 229 (299) T ss_dssp -------CHHHHHHHHHHHHHHHHHHHTCCTTSCEEEEEECCCCCTTTSSCTTSHHHHHHHHHTBCCCEEEECSCSBCTT T ss_pred CH----HHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCHHHHCHHHHHHHHHHHCCCCCCCCCCCCCCCCC T ss_conf 10----24688999999987656554202566517997237888651444010456666643200122225776543433 Q ss_pred CC--CCCCCCCCCCCCEEEEEECCCHHHCCCCCCEEEEE------ECCCCCCCCCCCCCCCCCEEEEEEC Q ss_conf 87--65646688820147999862043100247217864------1134554445555763438999849 Q gi|254781003|r 243 SR--CNANKNLRNKIPIDYFVMDQNAYKFLIQESFSEIL------YNEDDIKSRGKRLSDHCPISIDYDF 304 (304) Q Consensus 243 ~~--~~~~~~~~~~~~iD~I~~s~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~SDH~PV~~~l~f 304 (304) .. ...........||||||++++.............. ............+|||+||+++|+. T Consensus 230 ~~~~~~~~~~~~~~~riDyI~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SDH~PV~a~l~L 299 (299) T d2ddra1 230 TNSIAKYNFPDSPAEYLDYIIASKDHANPSYIENKVLQPKSPQWTVTSWFQKYTYNDYSDHYPVEATISM 299 (299) T ss_dssp TCHHHHHHCTTSCCBCCEEEEEBTTSCCCSEEEEEECCCCCCCEEEEETTEEEEECCSCSSCCEEEEEEC T ss_pred CCCCCCCCCCCCCCCEEEEEEEECCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEC T ss_conf 3444454568899842568995551048632424785024332200122257788995862228999989 No 3 >d2a40b1 d.151.1.1 (B:1-260) Deoxyribonuclease I {Cow (Bos taurus) [TaxId: 9913]} Probab=99.97 E-value=4.2e-29 Score=174.56 Aligned_cols=246 Identities=15% Similarity=0.123 Sum_probs=120.5 Q ss_pred EEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCH--HHHHHHHCC----CC--CEEEEEC Q ss_conf 699998301478866766677653101889999999998608988999950785--799986033----34--3078621 Q gi|254781003|r 24 VRLVSWNINTLSEQEGVSLWKNSVKRTTSDYTLLRQYAKNLDADIVFLQEMGSY--NAVAKVFPK----NT--WCIFYST 95 (304) Q Consensus 24 lrV~twNi~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~DIi~lQEv~~~--~~~~~~~~~----~~--~~~~~~~ 95 (304) ||||||||++|+.. ..+....++.|++++ .+|||||||||.+. ..+..++.. .. +...... T Consensus 1 lrI~s~Ni~~~~~~---------~~~~~~~~~~l~~~i--~~~DIi~LQEv~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 69 (260) T d2a40b1 1 LKIAAFNIRTFGET---------KMSNATLASYIVRIV--RRYDIVLIQEVRDSHLVAVGKLLDYLNQDDPNTYHYVVSE 69 (260) T ss_dssp CEEEEEEEEEESHH---------HHHSHHHHHHHHHHH--TTCSEEEEEEECCTTSHHHHHHHHHHTSSSTTSCEEEECC T ss_pred CEEEEEECCCCCCC---------CCCCHHHHHHHHHHC--CCCCEEEEEEEECCCCHHHHHHHHHHHHCCCCCCEEEECC T ss_conf 98999968834778---------666599999999874--7999899996234774169999986431146750367415 Q ss_pred CCCCCCCCCCCCCCCEEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCEEEEEEEE---ECCEEEEEEEECCCCCCCCCC Q ss_conf 45567543223446315899825852676530122467655555565336999998---299499999940678887752 Q gi|254781003|r 96 ERLINHSKRDSNNDIHTAIAVRKKNVRVLQQSYPLLGAKDSFSRAGNRRAVELLVE---INGKKIWVLDIHLKSFCFLDS 172 (304) Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~---~~~~~~~v~n~Hl~~~~~~~~ 172 (304) ... ........+...+.........................+........ .....+.+.+.|+.... T Consensus 70 ~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 139 (260) T d2a40b1 70 PLG------RNSYKERYLFLFRPNKVSVLDTYQYDDGCESCGNDSFSREPAVVKFSSHSTKVKEFAIVALHSAPSD---- 139 (260) T ss_dssp CBC------SSSCCBEEEEEECTTTCEEEEEEECCTTSTTTHHHHCSSCCEEEEEECTTSSSSEEEEEECCCCGGG---- T ss_pred CCC------CCCCCCCEEEEECCCCCCEECCCEECCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEEEECCCCCH---- T ss_conf 677------7754310025412544201112000135556765433323102121103456247999864155430---- Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 00002577899999999999998630368980999802688877662046898752255753111445678765646688 Q gi|254781003|r 173 LENTYSPSCSLLSQQAQWLKDWITQKKESLVPFVIAGDFNRKINYLGNNDDFWKTIDPNDSLIRFPKEKDSRCNANKNLR 252 (304) Q Consensus 173 ~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~vIi~GDfN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (304) ...+..|...+.+++.+. ..+.++|+|||||..+................... ........+..... T Consensus 140 --------~~~~~~~~~~~~~~~~~~-~~~~~~iv~GDfN~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 206 (260) T d2a40b1 140 --------AVAEINSLYDVYLDVQQK-WHLNDVMLMGDFNADCSYVTSSQWSSIRLRTSSTF----QWLIPDSADTTATS 206 (260) T ss_dssp --------HHHHHHHHHHHHHHHHHH-HCCCCEEEEEECCCSTTTSCGGGGGGCHHHHSTTE----EESSCTTCCCBSSS T ss_pred --------HHHHHHHHHHHHHHHHHH-CCCCCEEECCCCCCCCCCHHHHHHHHHCCCCCCCC----CCCCCCCCCCCCCC T ss_conf --------368888899999999863-45788797665567865234555544143222111----12678887633479 Q ss_pred CCCCEEEEEECCCHHHCCC-CCCEEEEEECCCC--CCCCCCCCCCCCCEEEEEE Q ss_conf 8201479998620431002-4721786411345--5444555576343899984 Q gi|254781003|r 253 NKIPIDYFVMDQNAYKFLI-QESFSEILYNEDD--IKSRGKRLSDHCPISIDYD 303 (304) Q Consensus 253 ~~~~iD~I~~s~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~SDH~PV~~~l~ 303 (304) ...+|||||++++...... .....+..+.... .......+|||+||+++|+ T Consensus 207 ~~~~iD~i~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~SDH~PV~v~ls 260 (260) T d2a40b1 207 TNCAYDRIVVAGSLLQSSVVPGSAAPFDFQAAYGLSNEMALAISDHYPVEVTLT 260 (260) T ss_dssp CCCCCEEEEEESHHHHHHBCTTCCEECCHHHHTTCCHHHHHHHCSBCCEEEEBC T ss_pred CCCCEEEEEECCHHHCCEEECCEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEC T ss_conf 998556899684461542632501442023212556335798077426799959 No 4 >d2f1na1 d.151.1.1 (A:1-250) Cytolethal distending toxin subunit B {Escherichia coli [TaxId: 562]} Probab=99.95 E-value=3.9e-28 Score=169.26 Aligned_cols=234 Identities=15% Similarity=0.077 Sum_probs=104.8 Q ss_pred CCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHH----HCCCCCE--EEEEC Q ss_conf 82699998301478866766677653101889999999998608988999950785799986----0333430--78621 Q gi|254781003|r 22 QKVRLVSWNINTLSEQEGVSLWKNSVKRTTSDYTLLRQYAKNLDADIVFLQEMGSYNAVAKV----FPKNTWC--IFYST 95 (304) Q Consensus 22 ~~lrV~twNi~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~DIi~lQEv~~~~~~~~~----~~~~~~~--~~~~~ 95 (304) ..||||||||+++.... ..++.. .....++...+|||||||||++....... +...++. .+... T Consensus 3 ~~~rv~TwNi~~~~~~~--------~~~~~~--~~~~~~~~~~~~DVl~lQEv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (250) T d2f1na1 3 TDFRVATWNLQGASATT--------ESKWNI--NVRQLISGENAVDILAVQEAGSPPSTAVDTGRVIPSPGIPVRELIWN 72 (250) T ss_dssp GGCCEEEEEEEECTTSC--------HHHHHT--HHHHHHSSTTCCSEEEEEEECSCCTTCEECCCCCCCSSCCCEEEEEE T ss_pred CCCEEEEEECCCCCCCC--------CCCCHH--HHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHCCCCCEEEEEC T ss_conf 78899999479775765--------565559--99999986689899999826863343366765443027642002321 Q ss_pred CCCC-CCCC--C----CCCCCCEEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEEEECCCCCC Q ss_conf 4556-7543--2----2344631589982585267653012246765555556533699999829949999994067888 Q gi|254781003|r 96 ERLI-NHSK--R----DSNNDIHTAIAVRKKNVRVLQQSYPLLGAKDSFSRAGNRRAVELLVEINGKKIWVLDIHLKSFC 168 (304) Q Consensus 96 ~~~~-~~~~--~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~v~n~Hl~~~~ 168 (304) .... .... . ........+.++.++.+.......+ ......|..+.+.+ ..+.++|+|+++.. T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~g~~i~s~~~~~~~~~~~-------~~~~~~r~~~~~~~----~~~~v~n~Hl~~~~ 141 (250) T d2f1na1 73 LSTNSRPQQVYIYFSAVDALGGRVNLALVSNRRADEVFVLS-------PVRQGGRPLLGIRI----GNDAFFTAHAIAMR 141 (250) T ss_dssp CCSSSSSCEEEEEEECSCSSSCSSCEEEEESSCCSEEEEEC-------CSSTTCCCEEEEEE----TTEEEEEEECCSSS T ss_pred CCCCCCCCEEEEEEECCCCCCCCCCEEEEECCCCCEEEECC-------CCCCCCCCEEEEEE----CEEEEEEEECCCCC T ss_conf 34456763267875114544657145999887530567517-------87542211036763----20899999818999 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCC Q ss_conf 77520000257789999999999999863036898099980268887766204689875225575311144567876564 Q gi|254781003|r 169 FLDSLENTYSPSCSLLSQQAQWLKDWITQKKESLVPFVIAGDFNRKINYLGNNDDFWKTIDPNDSLIRFPKEKDSRCNAN 248 (304) Q Consensus 169 ~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~vIi~GDfN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (304) ..+. ..+..++..+.+.+........++|+|||||..+....... ...+ .........+. T Consensus 142 ~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~iv~GDfN~~p~~~~~~~--~~~~------~~~~~~~~~~~--- 201 (250) T d2f1na1 142 NNDA---------PALVEEVYNFFRDSRDPVHQALNWMILGDFNREPADLEMNL--TVPV------RRASEIISPAA--- 201 (250) T ss_dssp SCSH---------HHHHHHHHHHHHTCSSHHHHTCEEEEEEECSSCHHHHHTTS--CHHH------HHTEEEECCSS--- T ss_pred CHHH---------HHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHH--HCCC------CCEEEECCCCC--- T ss_conf 5659---------99999999999998764146886687345576871255554--2011------22123218798--- Q ss_pred CCCCCCCCEEEEEECCCHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEE Q ss_conf 66888201479998620431002472178641134554445555763438999 Q gi|254781003|r 249 KNLRNKIPIDYFVMDQNAYKFLIQESFSEILYNEDDIKSRGKRLSDHCPISID 301 (304) Q Consensus 249 ~~~~~~~~iD~I~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SDH~PV~~~ 301 (304) .+.....+|||||+++++....... ... . .........+|||+||.+. T Consensus 202 ~t~~~~~riD~i~~s~~~~~~~~~~--~~~--~-~~~~~~~~~~SDH~PV~~~ 249 (250) T d2f1na1 202 ATQTSQRTLDYAVAGNSVAFRPSPL--QAG--I-VYGARRTQISSDHFPVGVS 249 (250) T ss_dssp CSBTTSCCCEEEEEEESSCCCCCCC--EEE--E-TTTTSCCCCSCSBCCEEEE T ss_pred CCCCCCCCEEEEEEECHHHCCCCEE--EEE--E-ECCCCCCCCCCCCCCEEEE T ss_conf 8657999579999826686264136--788--7-5143589971884255876 No 5 >d1vyba_ d.151.1.1 (A:) Endonuclease domain of LINE-1 reverse transcriptase homolog {Human (Homo sapiens) [TaxId: 9606]} Probab=99.95 E-value=1.3e-25 Score=155.45 Aligned_cols=222 Identities=16% Similarity=0.174 Sum_probs=110.2 Q ss_pred CCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHCCCCCEEEEECCCCC Q ss_conf 78826999983014788667666776531018899999999986089889999507857999860333430786214556 Q gi|254781003|r 20 VAQKVRLVSWNINTLSEQEGVSLWKNSVKRTTSDYTLLRQYAKNLDADIVFLQEMGSYNAVAKVFPKNTWCIFYSTERLI 99 (304) Q Consensus 20 ~~~~lrV~twNi~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~DIi~lQEv~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (304) +..++||+|||++++. ...+.+.+.++|.+.+||||||||+.....-........+..++...... T Consensus 2 ~~~~~kv~s~Nv~g~~--------------~~~~~~~i~~~i~~~~~DIi~LQE~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (236) T d1vyba_ 2 SNSHITILTLNINGLN--------------SAIKRHRLASWIKSQDPSVCCIQETHLTCRDTHRLKIKGWRKIYQANGKQ 67 (236) T ss_dssp CCCCEEEEEEECSCCC--------------SHHHHHHHHHHHHHHCCSEEEEECCCCCTTSGGGCCCTTCCEEEEECCSS T ss_pred CCCCEEEEEEECCCCC--------------CHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHCCCCEEEEEECCC T ss_conf 9898699999928961--------------24558899999987798599998354762326345422540489751011 Q ss_pred CCCCCCCCCCCEEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEEEECCCCCCCCCCCHHHHHH Q ss_conf 75432234463158998258526765301224676555555653369999982994999999406788877520000257 Q gi|254781003|r 100 NHSKRDSNNDIHTAIAVRKKNVRVLQQSYPLLGAKDSFSRAGNRRAVELLVEINGKKIWVLDIHLKSFCFLDSLENTYSP 179 (304) Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~v~n~Hl~~~~~~~~~~~~~~~ 179 (304) ...+.++.++.+.......... + .......+.+..++..+.++++|++..... T Consensus 68 --------~~~g~~i~~k~~~~~~~~~~~~-----~-----~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~--------- 120 (236) T d1vyba_ 68 --------KKAGVAILVSDKTDFKPTKIKR-----D-----KEGHYIMVKGSIQQEELTILNIYAPNTGAP--------- 120 (236) T ss_dssp --------SSCCEEEEECTTCCCEEEEEEE-----C-----TTSSEEEEEEEETTEEEEEEEEECCSSSHH--------- T ss_pred --------CCCCEEEEEECCCCCCCCCCCC-----C-----CCCCCEEEEEEECCCCCEEEEECCCCCCCH--------- T ss_conf --------2221146760365212356421-----1-----134310013431367624677413212207--------- Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCC---------HHHHHHHHHCCCCCCCCC----CCCCCCCCC Q ss_conf 7899999999999998630368980999802688877662---------046898752255753111----445678765 Q gi|254781003|r 180 SCSLLSQQAQWLKDWITQKKESLVPFVIAGDFNRKINYLG---------NNDDFWKTIDPNDSLIRF----PKEKDSRCN 246 (304) Q Consensus 180 ~~~~~~~q~~~l~~~~~~~~~~~~~vIi~GDfN~~~~~~~---------~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 246 (304) ..+. .+...+. ...+.|+|++||||....... ........+... ..... ........+ T Consensus 121 --~~~~----~~~~~~~--~~~~~~~Il~GDfN~~~~~~d~~~~~~~~~~~~~~~~~~~~~-~~~d~~r~~~~~~~~~~~ 191 (236) T d1vyba_ 121 --RFIK----QVLSDLQ--RDLDSHTLIMGDFNTPLSTLDRSTRQKVNKDTQELNSALHQA-DLIDIYRTLHPKSTEYTF 191 (236) T ss_dssp --HHHH----HHHHHTT--TTCCTTEEEEEECSSCSSGGGBTTCCCCCHHHHHHHHHHHHT-TEEEHHHHHCTTCCCCSE T ss_pred --HHHH----HHHHHHC--CCCCCEEEEEECCCCCCCHHHHCCCCCCHHHHHHHHHHHHHH-HCCCCCCEECCCCCCCCC T ss_conf --8887----6655411--344320699630255543344135421103578899999864-123321100147864333 Q ss_pred CCCCCCCCCCEEEEEECCCHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEE Q ss_conf 646688820147999862043100247217864113455444555576343899984 Q gi|254781003|r 247 ANKNLRNKIPIDYFVMDQNAYKFLIQESFSEILYNEDDIKSRGKRLSDHCPISIDYD 303 (304) Q Consensus 247 ~~~~~~~~~~iD~I~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SDH~PV~~~l~ 303 (304) .........||||||+|+.+....... ... + ..+|||+||+++|. T Consensus 192 ~~~~~~~~~RiD~il~s~~~~~~~~~~--~i~--------~--~~~SDH~pv~~~lk 236 (236) T d1vyba_ 192 FSAPHHTYSKIDHIVGSKALLSKCKRT--EII--------T--NYLSDHSAIKLELR 236 (236) T ss_dssp EETTTTEEECCEEEEEEGGGGGGEEEE--EEE--------C--CSSSSSCEEEEEEC T ss_pred CCCCCCCCCEEEEEEECHHHHHHCEEE--EEC--------C--CCCCCCCCEEEEEC T ss_conf 278899776367999871897224089--989--------9--97998101899959 No 6 >d2imqx1 d.151.1.2 (X:3-282) Salivary nitrophorin {Bedbug (Cimex lectularius) [TaxId: 79782]} Probab=99.93 E-value=1.2e-25 Score=155.61 Aligned_cols=240 Identities=11% Similarity=0.074 Sum_probs=113.2 Q ss_pred CCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCE--EEEEECCCHH--------HHH---HHH Q ss_conf 767882699998301478866766677653101889999999998608988--9999507857--------999---860 Q gi|254781003|r 18 ASVAQKVRLVSWNINTLSEQEGVSLWKNSVKRTTSDYTLLRQYAKNLDADI--VFLQEMGSYN--------AVA---KVF 84 (304) Q Consensus 18 ~~~~~~lrV~twNi~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~DI--i~lQEv~~~~--------~~~---~~~ 84 (304) ++..-+|+|+||||++.... .++..+.+.+.+.+||| |||||+.... ... +.. T Consensus 1 p~~~~~v~I~TwNv~~~~~~--------------~~~~~~l~~i~~~~pDI~vI~lQE~~~~~~~~~~~~~~~~~~~~~~ 66 (280) T d2imqx1 1 PPAQLSVHTVSWNSGHERAP--------------TNLEELLGLNSGETPDVIAVAVQGFGFQTDKPQQGPACVKNFQSLL 66 (280) T ss_dssp CCSEEEEEEEEEEEETCCCC--------------SCCHHHHTCTTSCCCSEEEEEEEESCTTTCTTCCHHHHHHHHHHHH T ss_pred CCCCEEEEEEEECCCCCCCC--------------CCHHHHHCCCCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHH T ss_conf 99725999998888997387--------------2889885624468989899970736856113623489999999872 Q ss_pred CCCCCEEEEECCCCCCCCCCCCCCCCEEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEEEECC Q ss_conf 33343078621455675432234463158998258526765301224676555555653369999982994999999406 Q gi|254781003|r 85 PKNTWCIFYSTERLINHSKRDSNNDIHTAIAVRKKNVRVLQQSYPLLGAKDSFSRAGNRRAVELLVEINGKKIWVLDIHL 164 (304) Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~v~n~Hl 164 (304) ...+|...... .....++.+..+.......................++++.+.+...+..+.++|+|+ T Consensus 67 ~~~~y~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~~~~~~~in~hl 134 (280) T d2imqx1 67 TSKGYTKLKNT------------ITETMGLTVYCLEKHLDQNTLKNETIIVTVDDQKKSGGIVTSFTIYNKRFSFTTSRM 134 (280) T ss_dssp HHTTEEEEEEE------------ECSSEEEEEEEEGGGCCTTTCCCEEEEEECSTTSCSEEEEEEEEETTEEEEEEEEEC T ss_pred CCCCEEEEEEE------------EEECEEEEEEECCCCCCCCEECCEEEECCCCCCCCCCEEEEEEEECCEEEEEECCCC T ss_conf 44871589861------------020317999972654455400221675047755677589999999999999634567 Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCHHHHHHHH-------HCC------- Q ss_conf 788877520000257789999999999999863036898099980268887766204689875-------225------- Q gi|254781003|r 165 KSFCFLDSLENTYSPSCSLLSQQAQWLKDWITQKKESLVPFVIAGDFNRKINYLGNNDDFWKT-------IDP------- 230 (304) Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~vIi~GDfN~~~~~~~~~~~~~~~-------~~~------- 230 (304) .+............. +............++|++||||............... ... T Consensus 135 ~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~vi~~GD~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (280) T d2imqx1 135 SDEDVTSTNTKYAYD-----------TRLDYSKKDDPSDFLFWIGDLNVRVETNATHAKSLVDQNNIDGLMAFDQLKKAK 203 (280) T ss_dssp CTTCCCTTSSSSSCC-----------GGGCTTSSSSCCSEEEEEEECSCCBCSCHHHHHHHHHTTCHHHHHTTBTHHHHH T ss_pred CCCCHHHHHHHHHHH-----------HHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHH T ss_conf 866036788988777-----------766555412677726872245444455627777664213302168999998753 Q ss_pred -CCCCCCCCCCCC---------CCCCCCCCCCCCCCEEEEEECCCHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCEEE Q ss_conf -575311144567---------8765646688820147999862043100247217864113455444555576343899 Q gi|254781003|r 231 -NDSLIRFPKEKD---------SRCNANKNLRNKIPIDYFVMDQNAYKFLIQESFSEILYNEDDIKSRGKRLSDHCPISI 300 (304) Q Consensus 231 -~~~~~~~~~~~~---------~~~~~~~~~~~~~~iD~I~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SDH~PV~~ 300 (304) ...+........ .....+...+-+++|||||+++.....+. ...+.. . ....+|||+||++ T Consensus 204 ~~~~~~~~~~~~~~ft~~~~~~~~~~~~~~~Rip~~iD~Il~~~~~~~~v~-----~~~y~~--~--~~~~~SDH~PV~a 274 (280) T d2imqx1 204 EQKLFDGWTEPQVTFKPTYKFKPNTDEYDLSATPSWTDRALYKSGTGKTIQ-----PLSYNS--L--TNYKQTEHRPVLA 274 (280) T ss_dssp HTTSSTTCBCCCCCSCCCBCBCTTSSCBCTTSCCBCCEEEEEECSSSCCEE-----EEEEEE--C--TTCCSSSSCCEEE T ss_pred HCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCEE-----EEEEEE--C--CCCCCCCCHHEEE T ss_conf 212521553699998974335676556788636765777997886689518-----989788--8--9988788830699 Q ss_pred EEE Q ss_conf 984 Q gi|254781003|r 301 DYD 303 (304) Q Consensus 301 ~l~ 303 (304) +|+ T Consensus 275 ~F~ 277 (280) T d2imqx1 275 KFR 277 (280) T ss_dssp EEE T ss_pred EEE T ss_conf 999 No 7 >d1wdua_ d.151.1.1 (A:) Endonuclease domain of TRAS1 retrotransposon (ORF2) {Silkworm (Bombyx mori) [TaxId: 7091]} Probab=99.93 E-value=1.3e-23 Score=144.60 Aligned_cols=218 Identities=16% Similarity=0.122 Sum_probs=111.6 Q ss_pred CEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHCCCCCEEEEECCCCCCCC Q ss_conf 26999983014788667666776531018899999999986089889999507857999860333430786214556754 Q gi|254781003|r 23 KVRLVSWNINTLSEQEGVSLWKNSVKRTTSDYTLLRQYAKNLDADIVFLQEMGSYNAVAKVFPKNTWCIFYSTERLINHS 102 (304) Q Consensus 23 ~lrV~twNi~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~DIi~lQEv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (304) +|||||||++. ...+.+.+...+...+|||+||||+..... .......++..+..... T Consensus 2 p~rV~~~Nv~~----------------~~~~~~~l~~~i~~~~~DIi~lQE~~~~~~-~~~~~~~~~~~~~~~~~----- 59 (228) T d1wdua_ 2 PYRVLQANLQR----------------KKLATAELAIEAATRKAAIALIQEPYVGGA-KSMKGFRGVRVFQSTAQ----- 59 (228) T ss_dssp CEEEEEEECTT----------------CHHHHHHHHHHHHHHTCSEEEEESCCC-------CCCSSCEEEECCCC----- T ss_pred CEEEEEECCCC----------------CHHHHHHHHHHHHHCCCCEEEEECCCCCCC-CCCCCCCCEEEEECCCC----- T ss_conf 87899420399----------------767899999999736997899987874898-85311362378834577----- Q ss_pred CCCCCCCCEEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEEEECCCCCCCCCCCHHHHHHHHH Q ss_conf 32234463158998258526765301224676555555653369999982994999999406788877520000257789 Q gi|254781003|r 103 KRDSNNDIHTAIAVRKKNVRVLQQSYPLLGAKDSFSRAGNRRAVELLVEINGKKIWVLDIHLKSFCFLDSLENTYSPSCS 182 (304) Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~v~n~Hl~~~~~~~~~~~~~~~~~~ 182 (304) .....+.++.++.+....... +.. ..+....+.+..++..++++++|++++...+ T Consensus 60 ---~~~~~~~~~~~~~~~~~~~~~--~~~---------~~~~~~~~~i~~~~~~i~v~~~y~~~~~~~~----------- 114 (228) T d1wdua_ 60 ---GDGTVKAAIAVFDHDLDVIQY--PQL---------TTNNIVVVGIRTRAWEITLVSYYFEPDKPIE----------- 114 (228) T ss_dssp ---TTCCCCEEEEECCSSCEEEEC--TTT---------CCSSEEEEEEECSSCEEEEEEEECCTTSCSH----------- T ss_pred ---CCCCCCEEEEEECCCCCEECC--CCC---------CCCCEEEEEEECCCCCEEEEEEEECCCCCCH----------- T ss_conf ---898762599998146404504--677---------8899799999828802899999818743106----------- Q ss_pred HHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCC------CHHHHHHHHHCCCCCCCCCCCCCCCCC-CCCCCCCCCC Q ss_conf 999999999999863036898099980268887766------204689875225575311144567876-5646688820 Q gi|254781003|r 183 LLSQQAQWLKDWITQKKESLVPFVIAGDFNRKINYL------GNNDDFWKTIDPNDSLIRFPKEKDSRC-NANKNLRNKI 255 (304) Q Consensus 183 ~~~~q~~~l~~~~~~~~~~~~~vIi~GDfN~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 255 (304) . ..+.+...+.. ....++|+|||||.....- .....+...+... ............+ .......... T Consensus 115 ~---~~~~l~~~~~~--~~~~~vIi~GDfN~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 188 (228) T d1wdua_ 115 S---YLEQIKRVERK--MGPKRLIFGGDANAKSTWWGSKEDDARGDQLMGTLGEL-GLHILNEGDVPTFDTIRGGKRYQS 188 (228) T ss_dssp H---HHHHHHHHHHT--TCSSSEEEEEECCCCCGGGTCSSCCHHHHHHHHHHHHH-TCEECCCSCCCSEEC-----CCEE T ss_pred H---HHHHHHHHHHH--CCCCEEEEECCCCCCCHHHHCCCCHHHHHHHHHHHHHH-CCCCCCCCCCCCCCCCCCCCCCCC T ss_conf 8---99999999874--58953999225355756673243205789999999860-753112577322003567878885 Q ss_pred CEEEEEECCCHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEC Q ss_conf 1479998620431002472178641134554445555763438999849 Q gi|254781003|r 256 PIDYFVMDQNAYKFLIQESFSEILYNEDDIKSRGKRLSDHCPISIDYDF 304 (304) Q Consensus 256 ~iD~I~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SDH~PV~~~l~f 304 (304) ||||+|+++.+....... .+ . .....|||.||+++|+. T Consensus 189 rID~~~~s~~l~~~v~~~--~v-------~--~~~~~SDH~~v~~~l~~ 226 (228) T d1wdua_ 189 RVDVTFCTEDMLDLIDGW--RV-------D--EDLVSSDHNGMVFNIRL 226 (228) T ss_dssp CCEEEEECGGGBTTEEEE--EE-------C--TTSSSSSBCCEEEEECC T ss_pred CEEEEEECCHHHHHCEEE--EE-------C--CCCCCCCCHHEEEEEEE T ss_conf 448999780586213599--99-------8--99999993576999997 No 8 >d1sr4b_ d.151.1.1 (B:) Cytolethal distending toxin subunit B {Haemophilus ducreyi [TaxId: 730]} Probab=99.93 E-value=2.4e-25 Score=154.09 Aligned_cols=245 Identities=16% Similarity=0.095 Sum_probs=109.6 Q ss_pred CCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHH----HHHCCCCCE--EEEEC Q ss_conf 826999983014788667666776531018899999999986089889999507857999----860333430--78621 Q gi|254781003|r 22 QKVRLVSWNINTLSEQEGVSLWKNSVKRTTSDYTLLRQYAKNLDADIVFLQEMGSYNAVA----KVFPKNTWC--IFYST 95 (304) Q Consensus 22 ~~lrV~twNi~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~DIi~lQEv~~~~~~~----~~~~~~~~~--~~~~~ 95 (304) +.||||||||++++... ....+...++.++...+|||||||||....... .+....++. .+... T Consensus 3 ~~~rv~TwNi~~~~~~~----------~~~~~~~~~~~~~~~~~~DIi~LQEv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (261) T d1sr4b_ 3 SDFKVATWNLQGSSAVN----------ESKWNINVRQLLSGEQGADILMVQEAGSLPSSAVRTSRVIQHGGTPIEEYTWN 72 (261) T ss_dssp GGSCEEEEECCCCSSSS----------HHHHHHHHHHHHCSTTCCSEEEEESCCSCCTTCEECSCCCCCSSSCCEEEEEE T ss_pred CCCEEEEEECCCCCCCC----------CCCCCHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCEEEEEC T ss_conf 78889999679687875----------55544899999985579998999856754563267998876507651144311 Q ss_pred CCC-CCCCCCC------CCCCCEEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEEEECCCCCC Q ss_conf 455-6754322------344631589982585267653012246765555556533699999829949999994067888 Q gi|254781003|r 96 ERL-INHSKRD------SNNDIHTAIAVRKKNVRVLQQSYPLLGAKDSFSRAGNRRAVELLVEINGKKIWVLDIHLKSFC 168 (304) Q Consensus 96 ~~~-~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~v~n~Hl~~~~ 168 (304) ... ....... .......|.++.++.+......... .......|.+..+.+ ....++++|+.... T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~ls~~~~~~~~~~~~-----~~~~~~~r~~~~~~~----~~~~~~~~~~~~~~ 143 (261) T d1sr4b_ 73 LGTRSRPNMVYIYYSRLDVGANRVNLAIVSRRQADEAFIVHS-----DSSVLQSRPAVGIRI----GTDVFFTVHALATG 143 (261) T ss_dssp SSCSSSCCEEEEEEECCCTTTSCSCEEEEESSCCSEEEEECC-----CCCSSCCCCEEEEEE----TTEEEEEEECCTTT T ss_pred CCCCCCCCEEEEEEECCCCCCCEEEEEEEECCCCCCCEECCC-----CCCCCCCCEEEEEEE----ECCCCEEEEEEECC T ss_conf 466667753689950443345301259996887501045368-----876666522799998----41551479996147 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCC Q ss_conf 77520000257789999999999999863036898099980268887766204689875225575311144567876564 Q gi|254781003|r 169 FLDSLENTYSPSCSLLSQQAQWLKDWITQKKESLVPFVIAGDFNRKINYLGNNDDFWKTIDPNDSLIRFPKEKDSRCNAN 248 (304) Q Consensus 169 ~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~vIi~GDfN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (304) ..... .....+...+..........+.|+|+|||||..+.+.. ...+..... ......... .. T Consensus 144 ~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~iv~GDfN~~~~~~~-----~~~~~~~~~-~~~~~~~~~-~~-- 206 (261) T d1sr4b_ 144 GSDAV--------SLIRNIFTTFNSSSSPPERRVYSWMVVGDFNRAPANLE-----VALRQEPAV-SENTIIIAP-TE-- 206 (261) T ss_dssp TTTHH--------HHHHHHHHHHHC---CGGGGGCEEEEEEECSSCHHHHH-----HHHTTSHHH-HHTCEEECC-SS-- T ss_pred CCCCH--------HHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHH-----HHHHHHHCC-CCCEECCCC-CC-- T ss_conf 75127--------99999999999999986356997799633276764088-----887664102-221001589-98-- Q ss_pred CCCCCCCCEEEEEECCCHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEE Q ss_conf 6688820147999862043100247217864113455444555576343899984 Q gi|254781003|r 249 KNLRNKIPIDYFVMDQNAYKFLIQESFSEILYNEDDIKSRGKRLSDHCPISIDYD 303 (304) Q Consensus 249 ~~~~~~~~iD~I~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SDH~PV~~~l~ 303 (304) .+.....+|||||+++................ ..........+|||+||..-++ T Consensus 207 ~t~~~~~~iD~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~SDH~PV~f~~~ 260 (261) T d1sr4b_ 207 PTHRSGNILDYAILHDAHLPRREQARERIGAS-LMLNQLRSQITSDHFPVSFVRD 260 (261) T ss_dssp CSBTTSCCCEEEEEECTTSCTTCGGGCCEEEE-ECGGGCSSCCSSSBCCEEEEEC T ss_pred CCCCCCCEECEEEECCCCCCEEEECCCCEEEE-EECCCCCCCCCCCCCCEEEEEC T ss_conf 96898980366996680003254044110235-5202357996177841089868 No 9 >d1hd7a_ d.151.1.1 (A:) DNA repair endonuclease Hap1 {Human (Homo sapiens) [TaxId: 9606]} Probab=99.91 E-value=2.1e-23 Score=143.45 Aligned_cols=233 Identities=15% Similarity=0.116 Sum_probs=100.8 Q ss_pred CCCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCC--HHHHHHHHCCCCCEEEEECC Q ss_conf 6788269999830147886676667765310188999999999860898899995078--57999860333430786214 Q gi|254781003|r 19 SVAQKVRLVSWNINTLSEQEGVSLWKNSVKRTTSDYTLLRQYAKNLDADIVFLQEMGS--YNAVAKVFPKNTWCIFYSTE 96 (304) Q Consensus 19 ~~~~~lrV~twNi~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~DIi~lQEv~~--~~~~~~~~~~~~~~~~~~~~ 96 (304) ..+.++||+||||+++. . ...+.+.++|+..+||||||||+.. ......+....+|....... T Consensus 14 ~~~~~mki~S~NvnGlr--------------~-~~~~~~~~~i~~~~pDIi~LQE~k~~~~~~~~~~~~~~~~~~~~~~~ 78 (275) T d1hd7a_ 14 GKPATLKICSWNVDGLR--------------A-WIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQELPGLSHQYWSA 78 (275) T ss_dssp SCBCCEEEEEEECSSHH--------------H-HHHTTHHHHHHHHCCSEEEEECCCCCC-----------CCCEEEEEC T ss_pred CCCCCEEEEEEEECCHH--------------H-HHHCCHHHHHHHCCCCEEEEECCCCCHHHCCHHHHHCCCCCEEEEEE T ss_conf 99876799999825687--------------6-13435899997589989998822058233888787165764356643 Q ss_pred CCCCCCCCCCCCCCEEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEEEECCCCCCCCCCCHHH Q ss_conf 55675432234463158998258526765301224676555555653369999982994999999406788877520000 Q gi|254781003|r 97 RLINHSKRDSNNDIHTAIAVRKKNVRVLQQSYPLLGAKDSFSRAGNRRAVELLVEINGKKIWVLDIHLKSFCFLDSLENT 176 (304) Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~v~n~Hl~~~~~~~~~~~~ 176 (304) .... .......+.. ...+............. ... ...........+....+|........ .. T Consensus 79 ~~~~------~~~~~~~~~~-~~~~~~v~~~~~~~~~~-------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 140 (275) T d1hd7a_ 79 PSDK------EGYSGVGLLS-RQCPLKVSYGIGDEEHD-------QEG-RVIVAEFDSFVLVTAYVPNAGRGLVR---LE 140 (275) T ss_dssp C-----------CCCEEEEE-SSCCSEEEESCSCGGGS-------SSS-CEEEEECSSCEEEEEECCCCCGGGTT---HH T ss_pred ECCC------CCCCCCCEEC-CCCCEEEEECCCCCCCH-------HHH-HEEEEEECCEEEEEEEEEECCCCCCC---HH T ss_conf 2023------3334420121-56860366423345302-------232-11245531304310245404665410---13 Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCHH----------------HHHHHHHCCCCCCCCC--- Q ss_conf 257789999999999999863036898099980268887766204----------------6898752255753111--- Q gi|254781003|r 177 YSPSCSLLSQQAQWLKDWITQKKESLVPFVIAGDFNRKINYLGNN----------------DDFWKTIDPNDSLIRF--- 237 (304) Q Consensus 177 ~~~~~~~~~~q~~~l~~~~~~~~~~~~~vIi~GDfN~~~~~~~~~----------------~~~~~~~~~~~~~~~~--- 237 (304) .. .....+..........+.+++++||||..+...... ..+...+... .+.+. T Consensus 141 ~~-------~~~~~~~~~~~~~~~~~~~~~~~gd~n~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~-~~~D~~r~ 212 (275) T d1hd7a_ 141 YR-------QRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAV-PLADSFRH 212 (275) T ss_dssp HH-------HHHHHHHHHHHHHHHHHSCEEEEEECSCCCSGGGBSCHHHHTTSTTSCHHHHHHHHHHHHHT-TCEEHHHH T ss_pred HH-------HHHCCCCCCCCCCCCCCCCEEEECCCCCCCCHHHHCCCHHHHCCCCCCCCCCHHHHHHHCCC-CCCCCEEE T ss_conf 33-------33100200001001247753761122457233440451012102222221104566554036-76532024 Q ss_pred --CCCCC-CCCCCCC----CCCCCCCEEEEEECCCHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEE Q ss_conf --44567-8765646----688820147999862043100247217864113455444555576343899984 Q gi|254781003|r 238 --PKEKD-SRCNANK----NLRNKIPIDYFVMDQNAYKFLIQESFSEILYNEDDIKSRGKRLSDHCPISIDYD 303 (304) Q Consensus 238 --~~~~~-~~~~~~~----~~~~~~~iD~I~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SDH~PV~~~l~ 303 (304) +.... .++++.. ......||||||+|+++..+..... + .....+|||+||+++|+ T Consensus 213 ~~p~~~~~~t~~~~~~~~~~~~~g~RIDyi~vs~~l~~~v~~~~--i---------~~~~~~SDH~PV~v~l~ 274 (275) T d1hd7a_ 213 LYPNTPYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALCDSK--I---------RSKALGSDHCPITLYLA 274 (275) T ss_dssp HCTTCTTCCSBCCSGGGHHHHTCCBCCEEEEECGGGGGGEEEEE--E---------CTTCCSSSBCCEEEEEC T ss_pred ECCCCCCCEEECCCCCCCCCCCCCEEEEEEEECHHHHHHEEEEE--E---------CCCCCCCCCCCEEEEEE T ss_conf 03776873023233478641899767579996718861255899--8---------78999998005799997 No 10 >d1akoa_ d.151.1.1 (A:) DNA-repair enzyme exonuclease III {Escherichia coli [TaxId: 562]} Probab=99.87 E-value=1.5e-20 Score=127.81 Aligned_cols=233 Identities=16% Similarity=0.162 Sum_probs=102.5 Q ss_pred EEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCHH--HHHHHHCCCCCEEEEECCCCCCC Q ss_conf 6999983014788667666776531018899999999986089889999507857--99986033343078621455675 Q gi|254781003|r 24 VRLVSWNINTLSEQEGVSLWKNSVKRTTSDYTLLRQYAKNLDADIVFLQEMGSYN--AVAKVFPKNTWCIFYSTERLINH 101 (304) Q Consensus 24 lrV~twNi~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~DIi~lQEv~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 101 (304) +||+||||+++. .+.+.+.++|++.+|||||||||.... .....+...+|.......... T Consensus 1 Mki~S~NvnG~r----------------~r~~~i~~~i~~~~~DIi~LQEv~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 62 (268) T d1akoa_ 1 MKFVSFNINGLR----------------ARPHQLEAIVEKHQPDVIGLQETKVHDDMFPLEEVAKLGYNVFYHGQKGH-- 62 (268) T ss_dssp CEEEEEECSCGG----------------GCHHHHHHHHHHHCCSEEEEECCCCCGGGCCHHHHHHTTCEEEEEEETTE-- T ss_pred CEEEEEEECCHH----------------HHHHHHHHHHHHCCCCEEEEEEEECCHHHCCHHHHHHCCCEEEECCCCCC-- T ss_conf 989999807999----------------84998999998779988999856568111998888656962553144344-- Q ss_pred CCCCCCCCCEEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEEEECCCCCCCCCCCHHHHHHHH Q ss_conf 43223446315899825852676530122467655555565336999998299499999940678887752000025778 Q gi|254781003|r 102 SKRDSNNDIHTAIAVRKKNVRVLQQSYPLLGAKDSFSRAGNRRAVELLVEINGKKIWVLDIHLKSFCFLDSLENTYSPSC 181 (304) Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~v~n~Hl~~~~~~~~~~~~~~~~~ 181 (304) ..+................. ......................++..+...+....... ...... T Consensus 63 ---------~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 126 (268) T d1akoa_ 63 ---------YGVALLTKETPIAVRRGFPG------DDEEAQRRIIMAEIPSLLGNVTVINGYFPQGESRDHPI-KFPAKA 126 (268) T ss_dssp ---------EEEEEEESSCCSEEEESSTT------CCHHHHTTEEEEEEEETTEEEEEEEEECCCCCBTTCTT-HHHHHH T ss_pred ---------CCCCCCCCCCCHHCCCCCCC------CCCCCCCCCCEEECCCCCCCEEEEEEEECCCCCCCCHH-HHHHHH T ss_conf ---------33432112354000147400------11235432100000013687479983101578631002-316778 Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCHH----------------------HHHHHHHCCCCCCCCCCC Q ss_conf 9999999999999863036898099980268887766204----------------------689875225575311144 Q gi|254781003|r 182 SLLSQQAQWLKDWITQKKESLVPFVIAGDFNRKINYLGNN----------------------DDFWKTIDPNDSLIRFPK 239 (304) Q Consensus 182 ~~~~~q~~~l~~~~~~~~~~~~~vIi~GDfN~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~ 239 (304) .........+........+.++++++|..+...... ..+...+.. ...+... T Consensus 127 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~D~~~ 200 (268) T d1akoa_ 127 ----QFYQNLQNYLETELKRDNPVLIMGDMNISPTDLDIGIGEENRKRWLRTGKCSFLPEEREWMDRLMSW--GLVDTFR 200 (268) T ss_dssp ----HHHHHHHHHHHHHCCTTSCEEEEEECCCCCSGGGBCSCHHHHHHHHHHTBTTSCHHHHHHHHHHHHT--TEEEHHH T ss_pred ----HHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCC--CCCCEEE T ss_conf ----8999999999987623886788740113763544432231241000246667898999999999708--8733010 Q ss_pred C----CCCC-CCCCC-----CCCCCCCEEEEEECCCHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEE Q ss_conf 5----6787-65646-----688820147999862043100247217864113455444555576343899984 Q gi|254781003|r 240 E----KDSR-CNANK-----NLRNKIPIDYFVMDQNAYKFLIQESFSEILYNEDDIKSRGKRLSDHCPISIDYD 303 (304) Q Consensus 240 ~----~~~~-~~~~~-----~~~~~~~iD~I~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SDH~PV~~~l~ 303 (304) . .... .+... ......||||||+|+++........ + . ........+|||+||+++|. T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~g~RIDyI~~s~~l~~~~~~~~--i---~--~~~~~~~~~SDH~PV~a~~~ 267 (268) T d1akoa_ 201 HANPQTADRFSWFDYRSKGFDDNRGLRIDLLLASQPLAECCVETG--I---D--YEIRSMEKPSDHAPVWATFR 267 (268) T ss_dssp HHSTTCCSCCSBCCTTTTHHHHTCCBCCEEEEEEHHHHTTEEEEE--E---C--HHHHTSSSCCSBCCEEEEEC T ss_pred ECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECHHHHHHHEEEE--E---E--CCCCCCCCCCCCCCEEEEEE T ss_conf 117876665413577666531799617789996728954314999--9---4--21028999997225799997 No 11 >d1i9za_ d.151.1.2 (A:) Synaptojanin, IPP5C domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Probab=99.86 E-value=2.3e-19 Score=121.39 Aligned_cols=141 Identities=18% Similarity=0.116 Sum_probs=72.5 Q ss_pred CCCCEEEEEEEEECCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH----HHCCCCCCCEEEEECCCCCC Q ss_conf 56533699999829949999994067888775200002577899999999999998----63036898099980268887 Q gi|254781003|r 140 AGNRRAVELLVEINGKKIWVLDIHLKSFCFLDSLENTYSPSCSLLSQQAQWLKDWI----TQKKESLVPFVIAGDFNRKI 215 (304) Q Consensus 140 ~~~r~~~~~~~~~~~~~~~v~n~Hl~~~~~~~~~~~~~~~~~~~~~~q~~~l~~~~----~~~~~~~~~vIi~GDfN~~~ 215 (304) .+..+++.+.+...+..+.++|+||+++..... .+..+...+.+.+ ........++|++||||... T Consensus 143 ~gnKGaV~vr~~i~~t~l~fvn~HL~ag~~~~~----------~R~~~~~~i~~~l~~~~~~~~~~~d~v~~~GDlN~R~ 212 (345) T d1i9za_ 143 SGNKGAVAIRFDYEDTGLCFITSHLAAGYTNYD----------ERDHDYRTIASGLRFRRGRSIFNHDYVVWFGDFNYRI 212 (345) T ss_dssp --CCEEEEEEEEETTEEEEEEEEECCCCSSCHH----------HHHHHHHHHHHHCCCGGGCCTTSSSEEEEEEECCCCB T ss_pred CCCCCEEEEEEEECCEEEEEEEECCCCCCCCHH----------HHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCC T ss_conf 368864999999989999999704667663067----------7887899999861135565545675269962323134 Q ss_pred CCCCHH----------------HHHHHHHCCC--------CCCCCCCCCCCCCCCC----CCCCCCCCCEEEEEECCCHH Q ss_conf 766204----------------6898752255--------7531114456787656----46688820147999862043 Q gi|254781003|r 216 NYLGNN----------------DDFWKTIDPN--------DSLIRFPKEKDSRCNA----NKNLRNKIPIDYFVMDQNAY 267 (304) Q Consensus 216 ~~~~~~----------------~~~~~~~~~~--------~~~~~~~~~~~~~~~~----~~~~~~~~~iD~I~~s~~~~ 267 (304) ...... +......... .+..+.+......... ....+-|+.-|+||++... T Consensus 213 ~~~~~~~~~~i~~~~~~~l~~~dql~~~~~~~~~~~~~~E~~I~F~PTyk~~~~~~~yd~~~k~RiPsWcDRIL~~~~~- 291 (345) T d1i9za_ 213 SLTYEEVVPCIAQGKLSYLFEYDQLNKQMLTGKVFPFFSELPITFPPTYKFDIGTDIYDTSDKHRVPAWTDRILYRGEL- 291 (345) T ss_dssp SSCHHHHHHHHHTTCHHHHHTTBHHHHHHHTTSSSTTCBCCCCCSCCCBCBCTTSSCBCCSTTCCCCBCCEEEEEESSC- T ss_pred CCCHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCEECCCCCCEEEEECCE- T ss_conf 6751666765422426678899998765543471447403887899998077898766777881472433659863762- Q ss_pred HCCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEC Q ss_conf 1002472178641134554445555763438999849 Q gi|254781003|r 268 KFLIQESFSEILYNEDDIKSRGKRLSDHCPISIDYDF 304 (304) Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~SDH~PV~~~l~f 304 (304) ....|... ....|||+||.+.|++ T Consensus 292 --------~~~~Y~s~-----~~~~SDH~PV~a~f~v 315 (345) T d1i9za_ 292 --------VPHSYQSV-----PLYYSDHRPIYATYEA 315 (345) T ss_dssp --------EEEEEEEC-----CCCSSSBCCEEEEEEE T ss_pred --------EEEEEECC-----CCCCCCCCCEEEEEEE T ss_conf --------56466036-----8778884468999999 Done!