Query         gi|254781003|ref|YP_003065416.1| hypothetical protein CLIBASIA_04520 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 304
No_of_seqs    132 out of 2576
Neff          11.2
Searched_HMMs 13730
Date          Wed Jun  1 11:08:33 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254781003.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d1zwxa1 d.151.1.3 (A:41-333) S 100.0 1.2E-34 8.8E-39  204.9  25.6  271   21-303     2-293 (293)
  2 d2ddra1 d.151.1.3 (A:7-305) Sp 100.0 2.5E-33 1.8E-37  197.7  25.4  273   21-304     1-299 (299)
  3 d2a40b1 d.151.1.1 (B:1-260) De 100.0 4.2E-29 3.1E-33  174.6  17.7  246   24-303     1-260 (260)
  4 d2f1na1 d.151.1.1 (A:1-250) Cy  99.9 3.9E-28 2.9E-32  169.3  10.5  234   22-301     3-249 (250)
  5 d1vyba_ d.151.1.1 (A:) Endonuc  99.9 1.3E-25 9.7E-30  155.5  21.4  222   20-303     2-236 (236)
  6 d2imqx1 d.151.1.2 (X:3-282) Sa  99.9 1.2E-25 9.1E-30  155.6  14.8  240   18-303     1-277 (280)
  7 d1wdua_ d.151.1.1 (A:) Endonuc  99.9 1.3E-23 9.4E-28  144.6  22.7  218   23-304     2-226 (228)
  8 d1sr4b_ d.151.1.1 (B:) Cytolet  99.9 2.4E-25 1.7E-29  154.1  13.7  245   22-303     3-260 (261)
  9 d1hd7a_ d.151.1.1 (A:) DNA rep  99.9 2.1E-23 1.5E-27  143.5  17.2  233   19-303    14-274 (275)
 10 d1akoa_ d.151.1.1 (A:) DNA-rep  99.9 1.5E-20 1.1E-24  127.8  18.7  233   24-303     1-267 (268)
 11 d1i9za_ d.151.1.2 (A:) Synapto  99.9 2.3E-19 1.7E-23  121.4  22.1  141  140-304   143-315 (345)

No 1  
>d1zwxa1 d.151.1.3 (A:41-333) Sphingomyelin phosphodiesterase C {Listeria ivanovii [TaxId: 1638]}
Probab=100.00  E-value=1.2e-34  Score=204.86  Aligned_cols=271  Identities=14%  Similarity=0.028  Sum_probs=148.0

Q ss_pred             CCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHCCCC--CEEEEECCCC
Q ss_conf             88269999830147886676667765310188999999999860898899995078579998603334--3078621455
Q gi|254781003|r   21 AQKVRLVSWNINTLSEQEGVSLWKNSVKRTTSDYTLLRQYAKNLDADIVFLQEMGSYNAVAKVFPKNT--WCIFYSTERL   98 (304)
Q Consensus        21 ~~~lrV~twNi~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~DIi~lQEv~~~~~~~~~~~~~~--~~~~~~~~~~   98 (304)
                      ++.||||||||++++....      +......+.+.|++.|...+|||||||||.+......+.....  |.........
T Consensus         2 ~~~lki~s~Nv~~~~~~~~------~~~~~~~r~~~i~~~i~~~~~DVi~LQEv~~~~~~~~l~~~~~~~~~~~~~~~~~   75 (293)
T d1zwxa1           2 PGNFKITSHNVYLFSRNIY------PNWGQMHRADLIAQADYMKNNDVVILNEAFDTSASHRLLNNLREMYPHQTPVIGR   75 (293)
T ss_dssp             CCSCEEEEEEEEECCTTTS------TTSCHHHHHHHHHTSGGGSSCSEEEEEEECSHHHHHHHHHHTTTTCCEECCCTTS
T ss_pred             CCCCEEEEEECCCCCCCCC------CCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEHHCCC
T ss_conf             9977899884685765558------9827899999999999756998899984677425899998776541400000113


Q ss_pred             CCCCCC------CCCCCCEEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEEEECCCCCCCCCC
Q ss_conf             675432------23446315899825852676530122467655555565336999998299499999940678887752
Q gi|254781003|r   99 INHSKR------DSNNDIHTAIAVRKKNVRVLQQSYPLLGAKDSFSRAGNRRAVELLVEINGKKIWVLDIHLKSFCFLDS  172 (304)
Q Consensus        99 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~v~n~Hl~~~~~~~~  172 (304)
                      ......      ........|+++.++.+........... .........+..+.+.+..++..++++++|++++.....
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~g~~ilsr~pi~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Hl~~~~~~~~  154 (293)
T d1zwxa1          76 SKHGWDKTEGNYSNFALEDGGVAVVSQWPIVEKSQHIFQR-GGGADRLSNKGFAYVKIMKNGKPYHIIGTHTQADDSLIS  154 (293)
T ss_dssp             CSTTCSEEEC-----CCBCCCCEEEESSCEEEEEEEECSC-CCGGGGGBCCEEEEEEEEETTEEEEEEEEECCCCCTTSC
T ss_pred             CCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEEEC-CCCCCCCCCCEEEEEEEECCCCEEEEEEEEEECCCCCCC
T ss_conf             4543221114544320126626999646754421565202-454200134148999996399347999844103677530


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCCEEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCC-CCCCCCCC-----
Q ss_conf             000025778999999999999986303-68980999802688877662046898752255753111-44567876-----
Q gi|254781003|r  173 LENTYSPSCSLLSQQAQWLKDWITQKK-ESLVPFVIAGDFNRKINYLGNNDDFWKTIDPNDSLIRF-PKEKDSRC-----  245 (304)
Q Consensus       173 ~~~~~~~~~~~~~~q~~~l~~~~~~~~-~~~~~vIi~GDfN~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-----  245 (304)
                      .    ......+..|++.+.+++.+.. ..+.++|||||||..+........... .......... ........     
T Consensus       155 ~----~~~~~~r~~~~~~~~~~~~~~~~~~~~~vil~GDfN~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  229 (293)
T d1zwxa1         155 K----DTSRAIRAEQMQEIQTFIAKKNIPKDEIIFIGGDLNVNYGTDEYHDMLKL-LNVSSPANFNGQMATWDPTTNSML  229 (293)
T ss_dssp             H----HHHHHHHHHHHHHHHHHHHHHTCCTTSEEEEEEECCCCTTSHHHHHHHHH-HTBCCCTTCCTTSCSBCTTTCHHH
T ss_pred             H----HHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHHH-CCCCCHHHCCCCCCCCCCCCCCCC
T ss_conf             3----57799999989886545554036889848998066989885578888753-365553230467764455324444


Q ss_pred             CCCCCCCCCCCEEEEEECCCHHHCCCCCCEEEEE------ECCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf             5646688820147999862043100247217864------113455444555576343899984
Q gi|254781003|r  246 NANKNLRNKIPIDYFVMDQNAYKFLIQESFSEIL------YNEDDIKSRGKRLSDHCPISIDYD  303 (304)
Q Consensus       246 ~~~~~~~~~~~iD~I~~s~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~SDH~PV~~~l~  303 (304)
                      ........+.||||||++++..............      ............+|||+||+++++
T Consensus       230 ~~~~~~~~~~~iD~I~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SDH~PV~A~~~  293 (293)
T d1zwxa1         230 KESYPKAAPEYLDYIFVENGHARPHSWHNKVLHTKSPQWSVKSWFKTYTYQDFSDHYPVVGFTD  293 (293)
T ss_dssp             HHHCTTSCCBCCEEEEEBTTSCCCSCEEEEECCCCCCCEEEEETTEEEEECCSSSSCCEEEEEC
T ss_pred             CCCCCCCCCCEEEEEEEECCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEC
T ss_conf             5455789886078999846303643222047752166301134335688899488178499959


No 2  
>d2ddra1 d.151.1.3 (A:7-305) Sphingomyelin phosphodiesterase C {Bacillus cereus [TaxId: 1396]}
Probab=100.00  E-value=2.5e-33  Score=197.66  Aligned_cols=273  Identities=15%  Similarity=0.090  Sum_probs=142.2

Q ss_pred             CCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHCCC--CCEEEEECC--
Q ss_conf             8826999983014788667666776531018899999999986089889999507857999860333--430786214--
Q gi|254781003|r   21 AQKVRLVSWNINTLSEQEGVSLWKNSVKRTTSDYTLLRQYAKNLDADIVFLQEMGSYNAVAKVFPKN--TWCIFYSTE--   96 (304)
Q Consensus        21 ~~~lrV~twNi~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~DIi~lQEv~~~~~~~~~~~~~--~~~~~~~~~--   96 (304)
                      .++||||||||++|....      .+......+.+.|++.+...+|||||||||.+......+....  .|.......  
T Consensus         1 ~~tl~v~s~Nv~~~~~~~------~~~~~~~~r~~~i~~~i~~~~~DIi~LQEv~~~~~~~~~~~~l~~~~~~~~~~~~~   74 (299)
T d2ddra1           1 NDTLKVMTHNVYMLSTNL------YPNWGQTERADLIGAADYIKNQDVVILNEVFDNSASDRLLGNLKKEYPNQTAVLGR   74 (299)
T ss_dssp             CCEEEEEEEEEEECCTTT------CTTSCHHHHHHHHHHCSTTCSCSEEEEEEECCHHHHHHHHHHHTTTCCEECCCTTS
T ss_pred             CCCEEEEEEECCCCCCCC------CCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEECCC
T ss_conf             996699987788465466------88727889999999998756998899992677652788888888756740332134


Q ss_pred             CCCCC-----CCCCCCCCCEEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEEEECCCCCCCCC
Q ss_conf             55675-----4322344631589982585267653012246765555556533699999829949999994067888775
Q gi|254781003|r   97 RLINH-----SKRDSNNDIHTAIAVRKKNVRVLQQSYPLLGAKDSFSRAGNRRAVELLVEINGKKIWVLDIHLKSFCFLD  171 (304)
Q Consensus        97 ~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~v~n~Hl~~~~~~~  171 (304)
                      .....     ...........|+++.++.+............ ........+.++.+....++..++++|+|++++....
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~g~~~~s~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~Hl~~~~~~~  153 (299)
T d2ddra1          75 SSGSEWDKTLGNYSSSTPEDGGVAIVSKWPIAEKIQYVFAKG-CGPDNLSNKGFVYTKIKKNDRFVHVIGTHLQAEDSMC  153 (299)
T ss_dssp             CCSTTSSEEEESCCTTCSSCCCCEEEESSCEEEEEEEECSCC-C----CCCCEEEEEEEEETTEEEEEEEEECCCC----
T ss_pred             CCCCCCCEEEECCCCCCCCCCEEEEEEEEECCCCEEEEEECC-CCCCCCCCEEEEEEEEECCCEEEEEEECCCCCCCCCC
T ss_conf             555555402301234310264169999861113134553113-5755434206999998069808999972466787753


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHH-CCCCCCCEEEEECCCCCCCCCCHHH-----HHHHHHCCCCCCCCCCCCCC---
Q ss_conf             20000257789999999999999863-0368980999802688877662046-----89875225575311144567---
Q gi|254781003|r  172 SLENTYSPSCSLLSQQAQWLKDWITQ-KKESLVPFVIAGDFNRKINYLGNND-----DFWKTIDPNDSLIRFPKEKD---  242 (304)
Q Consensus       172 ~~~~~~~~~~~~~~~q~~~l~~~~~~-~~~~~~~vIi~GDfN~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~---  242 (304)
                      ..    ......+..|++.+...+.. ....+.|+|+|||||..+.......     .....+............+.   
T Consensus       154 ~~----~~~~~~r~~q~~~~~~~~~~~~~~~~~~vi~~GDfN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~  229 (299)
T d2ddra1         154 GK----TSPASVRTNQLKEIQDFIKNKNIPNNEYVLIGGDMNVNKINAENNNDSEYASMFKTLNASVPSYTGHTATWDAT  229 (299)
T ss_dssp             -------CHHHHHHHHHHHHHHHHHHHTCCTTSCEEEEEECCCCCTTTSSCTTSHHHHHHHHHTBCCCEEEECSCSBCTT
T ss_pred             CH----HHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCHHHHCHHHHHHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf             10----24688999999987656554202566517997237888651444010456666643200122225776543433


Q ss_pred             CC--CCCCCCCCCCCCEEEEEECCCHHHCCCCCCEEEEE------ECCCCCCCCCCCCCCCCCEEEEEEC
Q ss_conf             87--65646688820147999862043100247217864------1134554445555763438999849
Q gi|254781003|r  243 SR--CNANKNLRNKIPIDYFVMDQNAYKFLIQESFSEIL------YNEDDIKSRGKRLSDHCPISIDYDF  304 (304)
Q Consensus       243 ~~--~~~~~~~~~~~~iD~I~~s~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~SDH~PV~~~l~f  304 (304)
                      ..  ...........||||||++++..............      ............+|||+||+++|+.
T Consensus       230 ~~~~~~~~~~~~~~~riDyI~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SDH~PV~a~l~L  299 (299)
T d2ddra1         230 TNSIAKYNFPDSPAEYLDYIIASKDHANPSYIENKVLQPKSPQWTVTSWFQKYTYNDYSDHYPVEATISM  299 (299)
T ss_dssp             TCHHHHHHCTTSCCBCCEEEEEBTTSCCCSEEEEEECCCCCCCEEEEETTEEEEECCSCSSCCEEEEEEC
T ss_pred             CCCCCCCCCCCCCCCEEEEEEEECCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEC
T ss_conf             3444454568899842568995551048632424785024332200122257788995862228999989


No 3  
>d2a40b1 d.151.1.1 (B:1-260) Deoxyribonuclease I {Cow (Bos taurus) [TaxId: 9913]}
Probab=99.97  E-value=4.2e-29  Score=174.56  Aligned_cols=246  Identities=15%  Similarity=0.123  Sum_probs=120.5

Q ss_pred             EEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCH--HHHHHHHCC----CC--CEEEEEC
Q ss_conf             699998301478866766677653101889999999998608988999950785--799986033----34--3078621
Q gi|254781003|r   24 VRLVSWNINTLSEQEGVSLWKNSVKRTTSDYTLLRQYAKNLDADIVFLQEMGSY--NAVAKVFPK----NT--WCIFYST   95 (304)
Q Consensus        24 lrV~twNi~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~DIi~lQEv~~~--~~~~~~~~~----~~--~~~~~~~   95 (304)
                      ||||||||++|+..         ..+....++.|++++  .+|||||||||.+.  ..+..++..    ..  +......
T Consensus         1 lrI~s~Ni~~~~~~---------~~~~~~~~~~l~~~i--~~~DIi~LQEv~~~~~~~~~~l~~~~~~~~~~~~~~~~~~   69 (260)
T d2a40b1           1 LKIAAFNIRTFGET---------KMSNATLASYIVRIV--RRYDIVLIQEVRDSHLVAVGKLLDYLNQDDPNTYHYVVSE   69 (260)
T ss_dssp             CEEEEEEEEEESHH---------HHHSHHHHHHHHHHH--TTCSEEEEEEECCTTSHHHHHHHHHHTSSSTTSCEEEECC
T ss_pred             CEEEEEECCCCCCC---------CCCCHHHHHHHHHHC--CCCCEEEEEEEECCCCHHHHHHHHHHHHCCCCCCEEEECC
T ss_conf             98999968834778---------666599999999874--7999899996234774169999986431146750367415


Q ss_pred             CCCCCCCCCCCCCCCEEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCEEEEEEEE---ECCEEEEEEEECCCCCCCCCC
Q ss_conf             45567543223446315899825852676530122467655555565336999998---299499999940678887752
Q gi|254781003|r   96 ERLINHSKRDSNNDIHTAIAVRKKNVRVLQQSYPLLGAKDSFSRAGNRRAVELLVE---INGKKIWVLDIHLKSFCFLDS  172 (304)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~---~~~~~~~v~n~Hl~~~~~~~~  172 (304)
                      ...      ........+...+.........................+........   .....+.+.+.|+....    
T Consensus        70 ~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  139 (260)
T d2a40b1          70 PLG------RNSYKERYLFLFRPNKVSVLDTYQYDDGCESCGNDSFSREPAVVKFSSHSTKVKEFAIVALHSAPSD----  139 (260)
T ss_dssp             CBC------SSSCCBEEEEEECTTTCEEEEEEECCTTSTTTHHHHCSSCCEEEEEECTTSSSSEEEEEECCCCGGG----
T ss_pred             CCC------CCCCCCCEEEEECCCCCCEECCCEECCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEEEECCCCCH----
T ss_conf             677------7754310025412544201112000135556765433323102121103456247999864155430----


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             00002577899999999999998630368980999802688877662046898752255753111445678765646688
Q gi|254781003|r  173 LENTYSPSCSLLSQQAQWLKDWITQKKESLVPFVIAGDFNRKINYLGNNDDFWKTIDPNDSLIRFPKEKDSRCNANKNLR  252 (304)
Q Consensus       173 ~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~vIi~GDfN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (304)
                              ...+..|...+.+++.+. ..+.++|+|||||..+...................    ........+.....
T Consensus       140 --------~~~~~~~~~~~~~~~~~~-~~~~~~iv~GDfN~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~  206 (260)
T d2a40b1         140 --------AVAEINSLYDVYLDVQQK-WHLNDVMLMGDFNADCSYVTSSQWSSIRLRTSSTF----QWLIPDSADTTATS  206 (260)
T ss_dssp             --------HHHHHHHHHHHHHHHHHH-HCCCCEEEEEECCCSTTTSCGGGGGGCHHHHSTTE----EESSCTTCCCBSSS
T ss_pred             --------HHHHHHHHHHHHHHHHHH-CCCCCEEECCCCCCCCCCHHHHHHHHHCCCCCCCC----CCCCCCCCCCCCCC
T ss_conf             --------368888899999999863-45788797665567865234555544143222111----12678887633479


Q ss_pred             CCCCEEEEEECCCHHHCCC-CCCEEEEEECCCC--CCCCCCCCCCCCCEEEEEE
Q ss_conf             8201479998620431002-4721786411345--5444555576343899984
Q gi|254781003|r  253 NKIPIDYFVMDQNAYKFLI-QESFSEILYNEDD--IKSRGKRLSDHCPISIDYD  303 (304)
Q Consensus       253 ~~~~iD~I~~s~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~SDH~PV~~~l~  303 (304)
                      ...+|||||++++...... .....+..+....  .......+|||+||+++|+
T Consensus       207 ~~~~iD~i~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~SDH~PV~v~ls  260 (260)
T d2a40b1         207 TNCAYDRIVVAGSLLQSSVVPGSAAPFDFQAAYGLSNEMALAISDHYPVEVTLT  260 (260)
T ss_dssp             CCCCCEEEEEESHHHHHHBCTTCCEECCHHHHTTCCHHHHHHHCSBCCEEEEBC
T ss_pred             CCCCEEEEEECCHHHCCEEECCEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEC
T ss_conf             998556899684461542632501442023212556335798077426799959


No 4  
>d2f1na1 d.151.1.1 (A:1-250) Cytolethal distending toxin subunit B {Escherichia coli [TaxId: 562]}
Probab=99.95  E-value=3.9e-28  Score=169.26  Aligned_cols=234  Identities=15%  Similarity=0.077  Sum_probs=104.8

Q ss_pred             CCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHH----HCCCCCE--EEEEC
Q ss_conf             82699998301478866766677653101889999999998608988999950785799986----0333430--78621
Q gi|254781003|r   22 QKVRLVSWNINTLSEQEGVSLWKNSVKRTTSDYTLLRQYAKNLDADIVFLQEMGSYNAVAKV----FPKNTWC--IFYST   95 (304)
Q Consensus        22 ~~lrV~twNi~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~DIi~lQEv~~~~~~~~~----~~~~~~~--~~~~~   95 (304)
                      ..||||||||+++....        ..++..  .....++...+|||||||||++.......    +...++.  .+...
T Consensus         3 ~~~rv~TwNi~~~~~~~--------~~~~~~--~~~~~~~~~~~~DVl~lQEv~~~~~~~~~~~~~~~~~~~~~~~~~~~   72 (250)
T d2f1na1           3 TDFRVATWNLQGASATT--------ESKWNI--NVRQLISGENAVDILAVQEAGSPPSTAVDTGRVIPSPGIPVRELIWN   72 (250)
T ss_dssp             GGCCEEEEEEEECTTSC--------HHHHHT--HHHHHHSSTTCCSEEEEEEECSCCTTCEECCCCCCCSSCCCEEEEEE
T ss_pred             CCCEEEEEECCCCCCCC--------CCCCHH--HHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHCCCCCEEEEEC
T ss_conf             78899999479775765--------565559--99999986689899999826863343366765443027642002321


Q ss_pred             CCCC-CCCC--C----CCCCCCEEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEEEECCCCCC
Q ss_conf             4556-7543--2----2344631589982585267653012246765555556533699999829949999994067888
Q gi|254781003|r   96 ERLI-NHSK--R----DSNNDIHTAIAVRKKNVRVLQQSYPLLGAKDSFSRAGNRRAVELLVEINGKKIWVLDIHLKSFC  168 (304)
Q Consensus        96 ~~~~-~~~~--~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~v~n~Hl~~~~  168 (304)
                      .... ....  .    ........+.++.++.+.......+       ......|..+.+.+    ..+.++|+|+++..
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~g~~i~s~~~~~~~~~~~-------~~~~~~r~~~~~~~----~~~~v~n~Hl~~~~  141 (250)
T d2f1na1          73 LSTNSRPQQVYIYFSAVDALGGRVNLALVSNRRADEVFVLS-------PVRQGGRPLLGIRI----GNDAFFTAHAIAMR  141 (250)
T ss_dssp             CCSSSSSCEEEEEEECSCSSSCSSCEEEEESSCCSEEEEEC-------CSSTTCCCEEEEEE----TTEEEEEEECCSSS
T ss_pred             CCCCCCCCEEEEEEECCCCCCCCCCEEEEECCCCCEEEECC-------CCCCCCCCEEEEEE----CEEEEEEEECCCCC
T ss_conf             34456763267875114544657145999887530567517-------87542211036763----20899999818999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf             77520000257789999999999999863036898099980268887766204689875225575311144567876564
Q gi|254781003|r  169 FLDSLENTYSPSCSLLSQQAQWLKDWITQKKESLVPFVIAGDFNRKINYLGNNDDFWKTIDPNDSLIRFPKEKDSRCNAN  248 (304)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~vIi~GDfN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (304)
                      ..+.         ..+..++..+.+.+........++|+|||||..+.......  ...+      .........+.   
T Consensus       142 ~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~iv~GDfN~~p~~~~~~~--~~~~------~~~~~~~~~~~---  201 (250)
T d2f1na1         142 NNDA---------PALVEEVYNFFRDSRDPVHQALNWMILGDFNREPADLEMNL--TVPV------RRASEIISPAA---  201 (250)
T ss_dssp             SCSH---------HHHHHHHHHHHHTCSSHHHHTCEEEEEEECSSCHHHHHTTS--CHHH------HHTEEEECCSS---
T ss_pred             CHHH---------HHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHH--HCCC------CCEEEECCCCC---
T ss_conf             5659---------99999999999998764146886687345576871255554--2011------22123218798---


Q ss_pred             CCCCCCCCEEEEEECCCHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEE
Q ss_conf             66888201479998620431002472178641134554445555763438999
Q gi|254781003|r  249 KNLRNKIPIDYFVMDQNAYKFLIQESFSEILYNEDDIKSRGKRLSDHCPISID  301 (304)
Q Consensus       249 ~~~~~~~~iD~I~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SDH~PV~~~  301 (304)
                      .+.....+|||||+++++.......  ...  . .........+|||+||.+.
T Consensus       202 ~t~~~~~riD~i~~s~~~~~~~~~~--~~~--~-~~~~~~~~~~SDH~PV~~~  249 (250)
T d2f1na1         202 ATQTSQRTLDYAVAGNSVAFRPSPL--QAG--I-VYGARRTQISSDHFPVGVS  249 (250)
T ss_dssp             CSBTTSCCCEEEEEEESSCCCCCCC--EEE--E-TTTTSCCCCSCSBCCEEEE
T ss_pred             CCCCCCCCEEEEEEECHHHCCCCEE--EEE--E-ECCCCCCCCCCCCCCEEEE
T ss_conf             8657999579999826686264136--788--7-5143589971884255876


No 5  
>d1vyba_ d.151.1.1 (A:) Endonuclease domain of LINE-1 reverse transcriptase homolog {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.95  E-value=1.3e-25  Score=155.45  Aligned_cols=222  Identities=16%  Similarity=0.174  Sum_probs=110.2

Q ss_pred             CCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHCCCCCEEEEECCCCC
Q ss_conf             78826999983014788667666776531018899999999986089889999507857999860333430786214556
Q gi|254781003|r   20 VAQKVRLVSWNINTLSEQEGVSLWKNSVKRTTSDYTLLRQYAKNLDADIVFLQEMGSYNAVAKVFPKNTWCIFYSTERLI   99 (304)
Q Consensus        20 ~~~~lrV~twNi~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~DIi~lQEv~~~~~~~~~~~~~~~~~~~~~~~~~   99 (304)
                      +..++||+|||++++.              ...+.+.+.++|.+.+||||||||+.....-........+..++......
T Consensus         2 ~~~~~kv~s~Nv~g~~--------------~~~~~~~i~~~i~~~~~DIi~LQE~~~~~~~~~~~~~~~~~~~~~~~~~~   67 (236)
T d1vyba_           2 SNSHITILTLNINGLN--------------SAIKRHRLASWIKSQDPSVCCIQETHLTCRDTHRLKIKGWRKIYQANGKQ   67 (236)
T ss_dssp             CCCCEEEEEEECSCCC--------------SHHHHHHHHHHHHHHCCSEEEEECCCCCTTSGGGCCCTTCCEEEEECCSS
T ss_pred             CCCCEEEEEEECCCCC--------------CHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHCCCCEEEEEECCC
T ss_conf             9898699999928961--------------24558899999987798599998354762326345422540489751011


Q ss_pred             CCCCCCCCCCCEEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEEEECCCCCCCCCCCHHHHHH
Q ss_conf             75432234463158998258526765301224676555555653369999982994999999406788877520000257
Q gi|254781003|r  100 NHSKRDSNNDIHTAIAVRKKNVRVLQQSYPLLGAKDSFSRAGNRRAVELLVEINGKKIWVLDIHLKSFCFLDSLENTYSP  179 (304)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~v~n~Hl~~~~~~~~~~~~~~~  179 (304)
                              ...+.++.++.+..........     +     .......+.+..++..+.++++|++.....         
T Consensus        68 --------~~~g~~i~~k~~~~~~~~~~~~-----~-----~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~---------  120 (236)
T d1vyba_          68 --------KKAGVAILVSDKTDFKPTKIKR-----D-----KEGHYIMVKGSIQQEELTILNIYAPNTGAP---------  120 (236)
T ss_dssp             --------SSCCEEEEECTTCCCEEEEEEE-----C-----TTSSEEEEEEEETTEEEEEEEEECCSSSHH---------
T ss_pred             --------CCCCEEEEEECCCCCCCCCCCC-----C-----CCCCCEEEEEEECCCCCEEEEECCCCCCCH---------
T ss_conf             --------2221146760365212356421-----1-----134310013431367624677413212207---------


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCC---------HHHHHHHHHCCCCCCCCC----CCCCCCCCC
Q ss_conf             7899999999999998630368980999802688877662---------046898752255753111----445678765
Q gi|254781003|r  180 SCSLLSQQAQWLKDWITQKKESLVPFVIAGDFNRKINYLG---------NNDDFWKTIDPNDSLIRF----PKEKDSRCN  246 (304)
Q Consensus       180 ~~~~~~~q~~~l~~~~~~~~~~~~~vIi~GDfN~~~~~~~---------~~~~~~~~~~~~~~~~~~----~~~~~~~~~  246 (304)
                        ..+.    .+...+.  ...+.|+|++||||.......         ........+... .....    ........+
T Consensus       121 --~~~~----~~~~~~~--~~~~~~~Il~GDfN~~~~~~d~~~~~~~~~~~~~~~~~~~~~-~~~d~~r~~~~~~~~~~~  191 (236)
T d1vyba_         121 --RFIK----QVLSDLQ--RDLDSHTLIMGDFNTPLSTLDRSTRQKVNKDTQELNSALHQA-DLIDIYRTLHPKSTEYTF  191 (236)
T ss_dssp             --HHHH----HHHHHTT--TTCCTTEEEEEECSSCSSGGGBTTCCCCCHHHHHHHHHHHHT-TEEEHHHHHCTTCCCCSE
T ss_pred             --HHHH----HHHHHHC--CCCCCEEEEEECCCCCCCHHHHCCCCCCHHHHHHHHHHHHHH-HCCCCCCEECCCCCCCCC
T ss_conf             --8887----6655411--344320699630255543344135421103578899999864-123321100147864333


Q ss_pred             CCCCCCCCCCEEEEEECCCHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf             646688820147999862043100247217864113455444555576343899984
Q gi|254781003|r  247 ANKNLRNKIPIDYFVMDQNAYKFLIQESFSEILYNEDDIKSRGKRLSDHCPISIDYD  303 (304)
Q Consensus       247 ~~~~~~~~~~iD~I~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SDH~PV~~~l~  303 (304)
                      .........||||||+|+.+.......  ...        +  ..+|||+||+++|.
T Consensus       192 ~~~~~~~~~RiD~il~s~~~~~~~~~~--~i~--------~--~~~SDH~pv~~~lk  236 (236)
T d1vyba_         192 FSAPHHTYSKIDHIVGSKALLSKCKRT--EII--------T--NYLSDHSAIKLELR  236 (236)
T ss_dssp             EETTTTEEECCEEEEEEGGGGGGEEEE--EEE--------C--CSSSSSCEEEEEEC
T ss_pred             CCCCCCCCCEEEEEEECHHHHHHCEEE--EEC--------C--CCCCCCCCEEEEEC
T ss_conf             278899776367999871897224089--989--------9--97998101899959


No 6  
>d2imqx1 d.151.1.2 (X:3-282) Salivary nitrophorin {Bedbug (Cimex lectularius) [TaxId: 79782]}
Probab=99.93  E-value=1.2e-25  Score=155.61  Aligned_cols=240  Identities=11%  Similarity=0.074  Sum_probs=113.2

Q ss_pred             CCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCE--EEEEECCCHH--------HHH---HHH
Q ss_conf             767882699998301478866766677653101889999999998608988--9999507857--------999---860
Q gi|254781003|r   18 ASVAQKVRLVSWNINTLSEQEGVSLWKNSVKRTTSDYTLLRQYAKNLDADI--VFLQEMGSYN--------AVA---KVF   84 (304)
Q Consensus        18 ~~~~~~lrV~twNi~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~DI--i~lQEv~~~~--------~~~---~~~   84 (304)
                      ++..-+|+|+||||++....              .++..+.+.+.+.+|||  |||||+....        ...   +..
T Consensus         1 p~~~~~v~I~TwNv~~~~~~--------------~~~~~~l~~i~~~~pDI~vI~lQE~~~~~~~~~~~~~~~~~~~~~~   66 (280)
T d2imqx1           1 PPAQLSVHTVSWNSGHERAP--------------TNLEELLGLNSGETPDVIAVAVQGFGFQTDKPQQGPACVKNFQSLL   66 (280)
T ss_dssp             CCSEEEEEEEEEEEETCCCC--------------SCCHHHHTCTTSCCCSEEEEEEEESCTTTCTTCCHHHHHHHHHHHH
T ss_pred             CCCCEEEEEEEECCCCCCCC--------------CCHHHHHCCCCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHH
T ss_conf             99725999998888997387--------------2889885624468989899970736856113623489999999872


Q ss_pred             CCCCCEEEEECCCCCCCCCCCCCCCCEEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEEEECC
Q ss_conf             33343078621455675432234463158998258526765301224676555555653369999982994999999406
Q gi|254781003|r   85 PKNTWCIFYSTERLINHSKRDSNNDIHTAIAVRKKNVRVLQQSYPLLGAKDSFSRAGNRRAVELLVEINGKKIWVLDIHL  164 (304)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~v~n~Hl  164 (304)
                      ...+|......            .....++.+..+.......................++++.+.+...+..+.++|+|+
T Consensus        67 ~~~~y~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~~~~~~~in~hl  134 (280)
T d2imqx1          67 TSKGYTKLKNT------------ITETMGLTVYCLEKHLDQNTLKNETIIVTVDDQKKSGGIVTSFTIYNKRFSFTTSRM  134 (280)
T ss_dssp             HHTTEEEEEEE------------ECSSEEEEEEEEGGGCCTTTCCCEEEEEECSTTSCSEEEEEEEEETTEEEEEEEEEC
T ss_pred             CCCCEEEEEEE------------EEECEEEEEEECCCCCCCCEECCEEEECCCCCCCCCCEEEEEEEECCEEEEEECCCC
T ss_conf             44871589861------------020317999972654455400221675047755677589999999999999634567


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCHHHHHHHH-------HCC-------
Q ss_conf             788877520000257789999999999999863036898099980268887766204689875-------225-------
Q gi|254781003|r  165 KSFCFLDSLENTYSPSCSLLSQQAQWLKDWITQKKESLVPFVIAGDFNRKINYLGNNDDFWKT-------IDP-------  230 (304)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~vIi~GDfN~~~~~~~~~~~~~~~-------~~~-------  230 (304)
                      .+.............           +............++|++||||...............       ...       
T Consensus       135 ~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~vi~~GD~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (280)
T d2imqx1         135 SDEDVTSTNTKYAYD-----------TRLDYSKKDDPSDFLFWIGDLNVRVETNATHAKSLVDQNNIDGLMAFDQLKKAK  203 (280)
T ss_dssp             CTTCCCTTSSSSSCC-----------GGGCTTSSSSCCSEEEEEEECSCCBCSCHHHHHHHHHTTCHHHHHTTBTHHHHH
T ss_pred             CCCCHHHHHHHHHHH-----------HHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf             866036788988777-----------766555412677726872245444455627777664213302168999998753


Q ss_pred             -CCCCCCCCCCCC---------CCCCCCCCCCCCCCEEEEEECCCHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCEEE
Q ss_conf             -575311144567---------8765646688820147999862043100247217864113455444555576343899
Q gi|254781003|r  231 -NDSLIRFPKEKD---------SRCNANKNLRNKIPIDYFVMDQNAYKFLIQESFSEILYNEDDIKSRGKRLSDHCPISI  300 (304)
Q Consensus       231 -~~~~~~~~~~~~---------~~~~~~~~~~~~~~iD~I~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SDH~PV~~  300 (304)
                       ...+........         .....+...+-+++|||||+++.....+.     ...+..  .  ....+|||+||++
T Consensus       204 ~~~~~~~~~~~~~~ft~~~~~~~~~~~~~~~Rip~~iD~Il~~~~~~~~v~-----~~~y~~--~--~~~~~SDH~PV~a  274 (280)
T d2imqx1         204 EQKLFDGWTEPQVTFKPTYKFKPNTDEYDLSATPSWTDRALYKSGTGKTIQ-----PLSYNS--L--TNYKQTEHRPVLA  274 (280)
T ss_dssp             HTTSSTTCBCCCCCSCCCBCBCTTSSCBCTTSCCBCCEEEEEECSSSCCEE-----EEEEEE--C--TTCCSSSSCCEEE
T ss_pred             HCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCEE-----EEEEEE--C--CCCCCCCCHHEEE
T ss_conf             212521553699998974335676556788636765777997886689518-----989788--8--9988788830699


Q ss_pred             EEE
Q ss_conf             984
Q gi|254781003|r  301 DYD  303 (304)
Q Consensus       301 ~l~  303 (304)
                      +|+
T Consensus       275 ~F~  277 (280)
T d2imqx1         275 KFR  277 (280)
T ss_dssp             EEE
T ss_pred             EEE
T ss_conf             999


No 7  
>d1wdua_ d.151.1.1 (A:) Endonuclease domain of TRAS1 retrotransposon (ORF2) {Silkworm (Bombyx mori) [TaxId: 7091]}
Probab=99.93  E-value=1.3e-23  Score=144.60  Aligned_cols=218  Identities=16%  Similarity=0.122  Sum_probs=111.6

Q ss_pred             CEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHCCCCCEEEEECCCCCCCC
Q ss_conf             26999983014788667666776531018899999999986089889999507857999860333430786214556754
Q gi|254781003|r   23 KVRLVSWNINTLSEQEGVSLWKNSVKRTTSDYTLLRQYAKNLDADIVFLQEMGSYNAVAKVFPKNTWCIFYSTERLINHS  102 (304)
Q Consensus        23 ~lrV~twNi~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~DIi~lQEv~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (304)
                      +|||||||++.                ...+.+.+...+...+|||+||||+..... .......++..+.....     
T Consensus         2 p~rV~~~Nv~~----------------~~~~~~~l~~~i~~~~~DIi~lQE~~~~~~-~~~~~~~~~~~~~~~~~-----   59 (228)
T d1wdua_           2 PYRVLQANLQR----------------KKLATAELAIEAATRKAAIALIQEPYVGGA-KSMKGFRGVRVFQSTAQ-----   59 (228)
T ss_dssp             CEEEEEEECTT----------------CHHHHHHHHHHHHHHTCSEEEEESCCC-------CCCSSCEEEECCCC-----
T ss_pred             CEEEEEECCCC----------------CHHHHHHHHHHHHHCCCCEEEEECCCCCCC-CCCCCCCCEEEEECCCC-----
T ss_conf             87899420399----------------767899999999736997899987874898-85311362378834577-----


Q ss_pred             CCCCCCCCEEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEEEECCCCCCCCCCCHHHHHHHHH
Q ss_conf             32234463158998258526765301224676555555653369999982994999999406788877520000257789
Q gi|254781003|r  103 KRDSNNDIHTAIAVRKKNVRVLQQSYPLLGAKDSFSRAGNRRAVELLVEINGKKIWVLDIHLKSFCFLDSLENTYSPSCS  182 (304)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~v~n~Hl~~~~~~~~~~~~~~~~~~  182 (304)
                         .....+.++.++.+.......  +..         ..+....+.+..++..++++++|++++...+           
T Consensus        60 ---~~~~~~~~~~~~~~~~~~~~~--~~~---------~~~~~~~~~i~~~~~~i~v~~~y~~~~~~~~-----------  114 (228)
T d1wdua_          60 ---GDGTVKAAIAVFDHDLDVIQY--PQL---------TTNNIVVVGIRTRAWEITLVSYYFEPDKPIE-----------  114 (228)
T ss_dssp             ---TTCCCCEEEEECCSSCEEEEC--TTT---------CCSSEEEEEEECSSCEEEEEEEECCTTSCSH-----------
T ss_pred             ---CCCCCCEEEEEECCCCCEECC--CCC---------CCCCEEEEEEECCCCCEEEEEEEECCCCCCH-----------
T ss_conf             ---898762599998146404504--677---------8899799999828802899999818743106-----------


Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCC------CHHHHHHHHHCCCCCCCCCCCCCCCCC-CCCCCCCCCC
Q ss_conf             999999999999863036898099980268887766------204689875225575311144567876-5646688820
Q gi|254781003|r  183 LLSQQAQWLKDWITQKKESLVPFVIAGDFNRKINYL------GNNDDFWKTIDPNDSLIRFPKEKDSRC-NANKNLRNKI  255 (304)
Q Consensus       183 ~~~~q~~~l~~~~~~~~~~~~~vIi~GDfN~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  255 (304)
                      .   ..+.+...+..  ....++|+|||||.....-      .....+...+... ............+ ..........
T Consensus       115 ~---~~~~l~~~~~~--~~~~~vIi~GDfN~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  188 (228)
T d1wdua_         115 S---YLEQIKRVERK--MGPKRLIFGGDANAKSTWWGSKEDDARGDQLMGTLGEL-GLHILNEGDVPTFDTIRGGKRYQS  188 (228)
T ss_dssp             H---HHHHHHHHHHT--TCSSSEEEEEECCCCCGGGTCSSCCHHHHHHHHHHHHH-TCEECCCSCCCSEEC-----CCEE
T ss_pred             H---HHHHHHHHHHH--CCCCEEEEECCCCCCCHHHHCCCCHHHHHHHHHHHHHH-CCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             8---99999999874--58953999225355756673243205789999999860-753112577322003567878885


Q ss_pred             CEEEEEECCCHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEC
Q ss_conf             1479998620431002472178641134554445555763438999849
Q gi|254781003|r  256 PIDYFVMDQNAYKFLIQESFSEILYNEDDIKSRGKRLSDHCPISIDYDF  304 (304)
Q Consensus       256 ~iD~I~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SDH~PV~~~l~f  304 (304)
                      ||||+|+++.+.......  .+       .  .....|||.||+++|+.
T Consensus       189 rID~~~~s~~l~~~v~~~--~v-------~--~~~~~SDH~~v~~~l~~  226 (228)
T d1wdua_         189 RVDVTFCTEDMLDLIDGW--RV-------D--EDLVSSDHNGMVFNIRL  226 (228)
T ss_dssp             CCEEEEECGGGBTTEEEE--EE-------C--TTSSSSSBCCEEEEECC
T ss_pred             CEEEEEECCHHHHHCEEE--EE-------C--CCCCCCCCHHEEEEEEE
T ss_conf             448999780586213599--99-------8--99999993576999997


No 8  
>d1sr4b_ d.151.1.1 (B:) Cytolethal distending toxin subunit B {Haemophilus ducreyi [TaxId: 730]}
Probab=99.93  E-value=2.4e-25  Score=154.09  Aligned_cols=245  Identities=16%  Similarity=0.095  Sum_probs=109.6

Q ss_pred             CCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHH----HHHCCCCCE--EEEEC
Q ss_conf             826999983014788667666776531018899999999986089889999507857999----860333430--78621
Q gi|254781003|r   22 QKVRLVSWNINTLSEQEGVSLWKNSVKRTTSDYTLLRQYAKNLDADIVFLQEMGSYNAVA----KVFPKNTWC--IFYST   95 (304)
Q Consensus        22 ~~lrV~twNi~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~DIi~lQEv~~~~~~~----~~~~~~~~~--~~~~~   95 (304)
                      +.||||||||++++...          ....+...++.++...+|||||||||.......    .+....++.  .+...
T Consensus         3 ~~~rv~TwNi~~~~~~~----------~~~~~~~~~~~~~~~~~~DIi~LQEv~~~~~~~~~~~~~~~~~~~~~~~~~~~   72 (261)
T d1sr4b_           3 SDFKVATWNLQGSSAVN----------ESKWNINVRQLLSGEQGADILMVQEAGSLPSSAVRTSRVIQHGGTPIEEYTWN   72 (261)
T ss_dssp             GGSCEEEEECCCCSSSS----------HHHHHHHHHHHHCSTTCCSEEEEESCCSCCTTCEECSCCCCCSSSCCEEEEEE
T ss_pred             CCCEEEEEECCCCCCCC----------CCCCCHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCEEEEEC
T ss_conf             78889999679687875----------55544899999985579998999856754563267998876507651144311


Q ss_pred             CCC-CCCCCCC------CCCCCEEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEEEECCCCCC
Q ss_conf             455-6754322------344631589982585267653012246765555556533699999829949999994067888
Q gi|254781003|r   96 ERL-INHSKRD------SNNDIHTAIAVRKKNVRVLQQSYPLLGAKDSFSRAGNRRAVELLVEINGKKIWVLDIHLKSFC  168 (304)
Q Consensus        96 ~~~-~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~v~n~Hl~~~~  168 (304)
                      ... .......      .......|.++.++.+.........     .......|.+..+.+    ....++++|+....
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~ls~~~~~~~~~~~~-----~~~~~~~r~~~~~~~----~~~~~~~~~~~~~~  143 (261)
T d1sr4b_          73 LGTRSRPNMVYIYYSRLDVGANRVNLAIVSRRQADEAFIVHS-----DSSVLQSRPAVGIRI----GTDVFFTVHALATG  143 (261)
T ss_dssp             SSCSSSCCEEEEEEECCCTTTSCSCEEEEESSCCSEEEEECC-----CCCSSCCCCEEEEEE----TTEEEEEEECCTTT
T ss_pred             CCCCCCCCEEEEEEECCCCCCCEEEEEEEECCCCCCCEECCC-----CCCCCCCCEEEEEEE----ECCCCEEEEEEECC
T ss_conf             466667753689950443345301259996887501045368-----876666522799998----41551479996147


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf             77520000257789999999999999863036898099980268887766204689875225575311144567876564
Q gi|254781003|r  169 FLDSLENTYSPSCSLLSQQAQWLKDWITQKKESLVPFVIAGDFNRKINYLGNNDDFWKTIDPNDSLIRFPKEKDSRCNAN  248 (304)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~vIi~GDfN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (304)
                      .....        .....+...+..........+.|+|+|||||..+.+..     ...+..... ......... ..  
T Consensus       144 ~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~iv~GDfN~~~~~~~-----~~~~~~~~~-~~~~~~~~~-~~--  206 (261)
T d1sr4b_         144 GSDAV--------SLIRNIFTTFNSSSSPPERRVYSWMVVGDFNRAPANLE-----VALRQEPAV-SENTIIIAP-TE--  206 (261)
T ss_dssp             TTTHH--------HHHHHHHHHHHC---CGGGGGCEEEEEEECSSCHHHHH-----HHHTTSHHH-HHTCEEECC-SS--
T ss_pred             CCCCH--------HHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHH-----HHHHHHHCC-CCCEECCCC-CC--
T ss_conf             75127--------99999999999999986356997799633276764088-----887664102-221001589-98--


Q ss_pred             CCCCCCCCEEEEEECCCHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf             6688820147999862043100247217864113455444555576343899984
Q gi|254781003|r  249 KNLRNKIPIDYFVMDQNAYKFLIQESFSEILYNEDDIKSRGKRLSDHCPISIDYD  303 (304)
Q Consensus       249 ~~~~~~~~iD~I~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SDH~PV~~~l~  303 (304)
                      .+.....+|||||+++................ ..........+|||+||..-++
T Consensus       207 ~t~~~~~~iD~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~SDH~PV~f~~~  260 (261)
T d1sr4b_         207 PTHRSGNILDYAILHDAHLPRREQARERIGAS-LMLNQLRSQITSDHFPVSFVRD  260 (261)
T ss_dssp             CSBTTSCCCEEEEEECTTSCTTCGGGCCEEEE-ECGGGCSSCCSSSBCCEEEEEC
T ss_pred             CCCCCCCEECEEEECCCCCCEEEECCCCEEEE-EECCCCCCCCCCCCCCEEEEEC
T ss_conf             96898980366996680003254044110235-5202357996177841089868


No 9  
>d1hd7a_ d.151.1.1 (A:) DNA repair endonuclease Hap1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.91  E-value=2.1e-23  Score=143.45  Aligned_cols=233  Identities=15%  Similarity=0.116  Sum_probs=100.8

Q ss_pred             CCCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCC--HHHHHHHHCCCCCEEEEECC
Q ss_conf             6788269999830147886676667765310188999999999860898899995078--57999860333430786214
Q gi|254781003|r   19 SVAQKVRLVSWNINTLSEQEGVSLWKNSVKRTTSDYTLLRQYAKNLDADIVFLQEMGS--YNAVAKVFPKNTWCIFYSTE   96 (304)
Q Consensus        19 ~~~~~lrV~twNi~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~DIi~lQEv~~--~~~~~~~~~~~~~~~~~~~~   96 (304)
                      ..+.++||+||||+++.              . ...+.+.++|+..+||||||||+..  ......+....+|.......
T Consensus        14 ~~~~~mki~S~NvnGlr--------------~-~~~~~~~~~i~~~~pDIi~LQE~k~~~~~~~~~~~~~~~~~~~~~~~   78 (275)
T d1hd7a_          14 GKPATLKICSWNVDGLR--------------A-WIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQELPGLSHQYWSA   78 (275)
T ss_dssp             SCBCCEEEEEEECSSHH--------------H-HHHTTHHHHHHHHCCSEEEEECCCCCC-----------CCCEEEEEC
T ss_pred             CCCCCEEEEEEEECCHH--------------H-HHHCCHHHHHHHCCCCEEEEECCCCCHHHCCHHHHHCCCCCEEEEEE
T ss_conf             99876799999825687--------------6-13435899997589989998822058233888787165764356643


Q ss_pred             CCCCCCCCCCCCCCEEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEEEECCCCCCCCCCCHHH
Q ss_conf             55675432234463158998258526765301224676555555653369999982994999999406788877520000
Q gi|254781003|r   97 RLINHSKRDSNNDIHTAIAVRKKNVRVLQQSYPLLGAKDSFSRAGNRRAVELLVEINGKKIWVLDIHLKSFCFLDSLENT  176 (304)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~v~n~Hl~~~~~~~~~~~~  176 (304)
                      ....      .......+.. ...+.............       ... ...........+....+|........   ..
T Consensus        79 ~~~~------~~~~~~~~~~-~~~~~~v~~~~~~~~~~-------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~---~~  140 (275)
T d1hd7a_          79 PSDK------EGYSGVGLLS-RQCPLKVSYGIGDEEHD-------QEG-RVIVAEFDSFVLVTAYVPNAGRGLVR---LE  140 (275)
T ss_dssp             C-----------CCCEEEEE-SSCCSEEEESCSCGGGS-------SSS-CEEEEECSSCEEEEEECCCCCGGGTT---HH
T ss_pred             ECCC------CCCCCCCEEC-CCCCEEEEECCCCCCCH-------HHH-HEEEEEECCEEEEEEEEEECCCCCCC---HH
T ss_conf             2023------3334420121-56860366423345302-------232-11245531304310245404665410---13


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCHH----------------HHHHHHHCCCCCCCCC---
Q ss_conf             257789999999999999863036898099980268887766204----------------6898752255753111---
Q gi|254781003|r  177 YSPSCSLLSQQAQWLKDWITQKKESLVPFVIAGDFNRKINYLGNN----------------DDFWKTIDPNDSLIRF---  237 (304)
Q Consensus       177 ~~~~~~~~~~q~~~l~~~~~~~~~~~~~vIi~GDfN~~~~~~~~~----------------~~~~~~~~~~~~~~~~---  237 (304)
                      ..       .....+..........+.+++++||||..+......                ..+...+... .+.+.   
T Consensus       141 ~~-------~~~~~~~~~~~~~~~~~~~~~~~gd~n~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~-~~~D~~r~  212 (275)
T d1hd7a_         141 YR-------QRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAV-PLADSFRH  212 (275)
T ss_dssp             HH-------HHHHHHHHHHHHHHHHHSCEEEEEECSCCCSGGGBSCHHHHTTSTTSCHHHHHHHHHHHHHT-TCEEHHHH
T ss_pred             HH-------HHHCCCCCCCCCCCCCCCCEEEECCCCCCCCHHHHCCCHHHHCCCCCCCCCCHHHHHHHCCC-CCCCCEEE
T ss_conf             33-------33100200001001247753761122457233440451012102222221104566554036-76532024


Q ss_pred             --CCCCC-CCCCCCC----CCCCCCCEEEEEECCCHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf             --44567-8765646----688820147999862043100247217864113455444555576343899984
Q gi|254781003|r  238 --PKEKD-SRCNANK----NLRNKIPIDYFVMDQNAYKFLIQESFSEILYNEDDIKSRGKRLSDHCPISIDYD  303 (304)
Q Consensus       238 --~~~~~-~~~~~~~----~~~~~~~iD~I~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SDH~PV~~~l~  303 (304)
                        +.... .++++..    ......||||||+|+++..+.....  +         .....+|||+||+++|+
T Consensus       213 ~~p~~~~~~t~~~~~~~~~~~~~g~RIDyi~vs~~l~~~v~~~~--i---------~~~~~~SDH~PV~v~l~  274 (275)
T d1hd7a_         213 LYPNTPYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALCDSK--I---------RSKALGSDHCPITLYLA  274 (275)
T ss_dssp             HCTTCTTCCSBCCSGGGHHHHTCCBCCEEEEECGGGGGGEEEEE--E---------CTTCCSSSBCCEEEEEC
T ss_pred             ECCCCCCCEEECCCCCCCCCCCCCEEEEEEEECHHHHHHEEEEE--E---------CCCCCCCCCCCEEEEEE
T ss_conf             03776873023233478641899767579996718861255899--8---------78999998005799997


No 10 
>d1akoa_ d.151.1.1 (A:) DNA-repair enzyme exonuclease III {Escherichia coli [TaxId: 562]}
Probab=99.87  E-value=1.5e-20  Score=127.81  Aligned_cols=233  Identities=16%  Similarity=0.162  Sum_probs=102.5

Q ss_pred             EEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCHH--HHHHHHCCCCCEEEEECCCCCCC
Q ss_conf             6999983014788667666776531018899999999986089889999507857--99986033343078621455675
Q gi|254781003|r   24 VRLVSWNINTLSEQEGVSLWKNSVKRTTSDYTLLRQYAKNLDADIVFLQEMGSYN--AVAKVFPKNTWCIFYSTERLINH  101 (304)
Q Consensus        24 lrV~twNi~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~DIi~lQEv~~~~--~~~~~~~~~~~~~~~~~~~~~~~  101 (304)
                      +||+||||+++.                .+.+.+.++|++.+|||||||||....  .....+...+|..........  
T Consensus         1 Mki~S~NvnG~r----------------~r~~~i~~~i~~~~~DIi~LQEv~~~~~~~~~~~~~~~~~~~~~~~~~~~--   62 (268)
T d1akoa_           1 MKFVSFNINGLR----------------ARPHQLEAIVEKHQPDVIGLQETKVHDDMFPLEEVAKLGYNVFYHGQKGH--   62 (268)
T ss_dssp             CEEEEEECSCGG----------------GCHHHHHHHHHHHCCSEEEEECCCCCGGGCCHHHHHHTTCEEEEEEETTE--
T ss_pred             CEEEEEEECCHH----------------HHHHHHHHHHHHCCCCEEEEEEEECCHHHCCHHHHHHCCCEEEECCCCCC--
T ss_conf             989999807999----------------84998999998779988999856568111998888656962553144344--


Q ss_pred             CCCCCCCCCEEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEEEECCCCCCCCCCCHHHHHHHH
Q ss_conf             43223446315899825852676530122467655555565336999998299499999940678887752000025778
Q gi|254781003|r  102 SKRDSNNDIHTAIAVRKKNVRVLQQSYPLLGAKDSFSRAGNRRAVELLVEINGKKIWVLDIHLKSFCFLDSLENTYSPSC  181 (304)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~v~n~Hl~~~~~~~~~~~~~~~~~  181 (304)
                               ..+.................      ......................++..+...+....... ......
T Consensus        63 ---------~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  126 (268)
T d1akoa_          63 ---------YGVALLTKETPIAVRRGFPG------DDEEAQRRIIMAEIPSLLGNVTVINGYFPQGESRDHPI-KFPAKA  126 (268)
T ss_dssp             ---------EEEEEEESSCCSEEEESSTT------CCHHHHTTEEEEEEEETTEEEEEEEEECCCCCBTTCTT-HHHHHH
T ss_pred             ---------CCCCCCCCCCCHHCCCCCCC------CCCCCCCCCCEEECCCCCCCEEEEEEEECCCCCCCCHH-HHHHHH
T ss_conf             ---------33432112354000147400------11235432100000013687479983101578631002-316778


Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCHH----------------------HHHHHHHCCCCCCCCCCC
Q ss_conf             9999999999999863036898099980268887766204----------------------689875225575311144
Q gi|254781003|r  182 SLLSQQAQWLKDWITQKKESLVPFVIAGDFNRKINYLGNN----------------------DDFWKTIDPNDSLIRFPK  239 (304)
Q Consensus       182 ~~~~~q~~~l~~~~~~~~~~~~~vIi~GDfN~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~  239 (304)
                          .........+........+.++++++|..+......                      ..+...+..  ...+...
T Consensus       127 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~D~~~  200 (268)
T d1akoa_         127 ----QFYQNLQNYLETELKRDNPVLIMGDMNISPTDLDIGIGEENRKRWLRTGKCSFLPEEREWMDRLMSW--GLVDTFR  200 (268)
T ss_dssp             ----HHHHHHHHHHHHHCCTTSCEEEEEECCCCCSGGGBCSCHHHHHHHHHHTBTTSCHHHHHHHHHHHHT--TEEEHHH
T ss_pred             ----HHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCC--CCCCEEE
T ss_conf             ----8999999999987623886788740113763544432231241000246667898999999999708--8733010


Q ss_pred             C----CCCC-CCCCC-----CCCCCCCEEEEEECCCHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf             5----6787-65646-----688820147999862043100247217864113455444555576343899984
Q gi|254781003|r  240 E----KDSR-CNANK-----NLRNKIPIDYFVMDQNAYKFLIQESFSEILYNEDDIKSRGKRLSDHCPISIDYD  303 (304)
Q Consensus       240 ~----~~~~-~~~~~-----~~~~~~~iD~I~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SDH~PV~~~l~  303 (304)
                      .    .... .+...     ......||||||+|+++........  +   .  ........+|||+||+++|.
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~g~RIDyI~~s~~l~~~~~~~~--i---~--~~~~~~~~~SDH~PV~a~~~  267 (268)
T d1akoa_         201 HANPQTADRFSWFDYRSKGFDDNRGLRIDLLLASQPLAECCVETG--I---D--YEIRSMEKPSDHAPVWATFR  267 (268)
T ss_dssp             HHSTTCCSCCSBCCTTTTHHHHTCCBCCEEEEEEHHHHTTEEEEE--E---C--HHHHTSSSCCSBCCEEEEEC
T ss_pred             ECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECHHHHHHHEEEE--E---E--CCCCCCCCCCCCCCEEEEEE
T ss_conf             117876665413577666531799617789996728954314999--9---4--21028999997225799997


No 11 
>d1i9za_ d.151.1.2 (A:) Synaptojanin, IPP5C domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Probab=99.86  E-value=2.3e-19  Score=121.39  Aligned_cols=141  Identities=18%  Similarity=0.116  Sum_probs=72.5

Q ss_pred             CCCCEEEEEEEEECCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH----HHCCCCCCCEEEEECCCCCC
Q ss_conf             56533699999829949999994067888775200002577899999999999998----63036898099980268887
Q gi|254781003|r  140 AGNRRAVELLVEINGKKIWVLDIHLKSFCFLDSLENTYSPSCSLLSQQAQWLKDWI----TQKKESLVPFVIAGDFNRKI  215 (304)
Q Consensus       140 ~~~r~~~~~~~~~~~~~~~v~n~Hl~~~~~~~~~~~~~~~~~~~~~~q~~~l~~~~----~~~~~~~~~vIi~GDfN~~~  215 (304)
                      .+..+++.+.+...+..+.++|+||+++.....          .+..+...+.+.+    ........++|++||||...
T Consensus       143 ~gnKGaV~vr~~i~~t~l~fvn~HL~ag~~~~~----------~R~~~~~~i~~~l~~~~~~~~~~~d~v~~~GDlN~R~  212 (345)
T d1i9za_         143 SGNKGAVAIRFDYEDTGLCFITSHLAAGYTNYD----------ERDHDYRTIASGLRFRRGRSIFNHDYVVWFGDFNYRI  212 (345)
T ss_dssp             --CCEEEEEEEEETTEEEEEEEEECCCCSSCHH----------HHHHHHHHHHHHCCCGGGCCTTSSSEEEEEEECCCCB
T ss_pred             CCCCCEEEEEEEECCEEEEEEEECCCCCCCCHH----------HHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCC
T ss_conf             368864999999989999999704667663067----------7887899999861135565545675269962323134


Q ss_pred             CCCCHH----------------HHHHHHHCCC--------CCCCCCCCCCCCCCCC----CCCCCCCCCEEEEEECCCHH
Q ss_conf             766204----------------6898752255--------7531114456787656----46688820147999862043
Q gi|254781003|r  216 NYLGNN----------------DDFWKTIDPN--------DSLIRFPKEKDSRCNA----NKNLRNKIPIDYFVMDQNAY  267 (304)
Q Consensus       216 ~~~~~~----------------~~~~~~~~~~--------~~~~~~~~~~~~~~~~----~~~~~~~~~iD~I~~s~~~~  267 (304)
                      ......                +.........        .+..+.+.........    ....+-|+.-|+||++... 
T Consensus       213 ~~~~~~~~~~i~~~~~~~l~~~dql~~~~~~~~~~~~~~E~~I~F~PTyk~~~~~~~yd~~~k~RiPsWcDRIL~~~~~-  291 (345)
T d1i9za_         213 SLTYEEVVPCIAQGKLSYLFEYDQLNKQMLTGKVFPFFSELPITFPPTYKFDIGTDIYDTSDKHRVPAWTDRILYRGEL-  291 (345)
T ss_dssp             SSCHHHHHHHHHTTCHHHHHTTBHHHHHHHTTSSSTTCBCCCCCSCCCBCBCTTSSCBCCSTTCCCCBCCEEEEEESSC-
T ss_pred             CCCHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCEECCCCCCEEEEECCE-
T ss_conf             6751666765422426678899998765543471447403887899998077898766777881472433659863762-


Q ss_pred             HCCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEC
Q ss_conf             1002472178641134554445555763438999849
Q gi|254781003|r  268 KFLIQESFSEILYNEDDIKSRGKRLSDHCPISIDYDF  304 (304)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~SDH~PV~~~l~f  304 (304)
                              ....|...     ....|||+||.+.|++
T Consensus       292 --------~~~~Y~s~-----~~~~SDH~PV~a~f~v  315 (345)
T d1i9za_         292 --------VPHSYQSV-----PLYYSDHRPIYATYEA  315 (345)
T ss_dssp             --------EEEEEEEC-----CCCSSSBCCEEEEEEE
T ss_pred             --------EEEEEECC-----CCCCCCCCCEEEEEEE
T ss_conf             --------56466036-----8778884468999999


Done!