PSIBLAST alignment of GI: 254781003 and protein with PDB id: 1vyb

>gi|49259594|pdb|1VYB|A Chain A, Endonuclease Domain Of Human Line1 Orf2p Length = 238
>gi|49259595|pdb|1VYB|B Chain B, Endonuclease Domain Of Human Line1 Orf2p Length = 238
 Score = 54.2 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 31/292 (10%), Positives = 71/292 (24%), Gaps = 75/292 (25%)

Query: 24  VRLVSWNINTLSEQEGVSLWKNSVKRTTSDYTLLRQYAKNLDADIVFLQEMGSYNAVAKV 83
           + +++ NIN L+              +      L  + K+ D  +  +QE          
Sbjct: 8   ITILTLNINGLN--------------SAIKRHRLASWIKSQDPSVCCIQET--------- 44

Query: 84  FPKNTWCIFYSTERLINHSKRDSNNDIHTAIAVRKKNVRVLQQSYPLLGAKDSFSRAGNR 143
                        +      + +       +A+                           
Sbjct: 45  -HLTCRDTHRLKIKGWRKIYQANGKQKKAGVAIL-------VSDKTDFKPTKIKRDKEGH 96

Query: 144 RAVELLVEINGKKIWVLDIHLKSFCFLDSLENTYSPSCSLLSQQAQWLKDWITQKKESLV 203
             + +   I  +++ +L+I+  +                 + Q    L+  +        
Sbjct: 97  YIM-VKGSIQQEELTILNIYAPNTGAP-----------RFIKQVLSDLQRDLDSH----- 139

Query: 204 PFVIAGDFNRKI-------------NYLGNNDDFWKTIDPNDSLIRFPKEKDSRCNANKN 250
             +I GDFN  +             +    N    +    +      PK  +    +  +
Sbjct: 140 -TLIMGDFNTPLSTLDRSTRQKVNKDTQELNSALHQADLIDIYRTLHPKSTEYTFFSAPH 198

Query: 251 LRNKIPIDYFVMDQNAYKFLIQESFSEILYNEDDIKSRGKRLSDHCPISIDY 302
                 ID+ V  +       +                   LSDH  I ++ 
Sbjct: 199 HTY-SKIDHIVGSKALLSKCKRTEIIT------------NYLSDHSAIKLEL 237