PSIBLAST alignment of GI: 254781003 and protein with PDB id: 2jc5

gi|157883966|pdb|2JC5|A Chain A, Apurinic Apyrimidinic (Ap) Endonuclease (Nape) From Neisseria Meningitidis Length = 259

 Score = 80.8 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 37/305 (12%), Positives = 81/305 (26%), Gaps = 74/305 (24%)

Query: 24  VRLVSWNINTLSEQEGVSLWKNSVKRTTSDYTLLRQYAKNLDADIVFLQEMGSYNAVAKV 83
           ++++S N+N +        +               +Y     ADIV +QE+ +  A    
Sbjct: 2   LKIISANVNGIRSAYKKGFY---------------EYIAASGADIVCVQELKAQEADLSA 46

Query: 84  FPKNTWCIFYSTERLINHSKRDSNNDIHTAIAVRKKNVRVLQQSYPLLGAKDSFSRAGNR 143
             KN   +                   ++ +AV  K           +G          R
Sbjct: 47  DMKNPHGMHGHWHCAEKRG--------YSGVAVYSKRKP----DNVQIGMGIEEFDREGR 94

Query: 144 RAVELLVEINGKKIWVLDIHLKSFCFLDSLENTYSPSCSLLSQQAQWLKDWITQKKESLV 203
                 V  +  ++ V+ ++L S    +  +        +  +        +   K    
Sbjct: 95  F-----VRCDFGRLSVISLYLPSGSSAEERQ-------QVKYRFLDAFYPMLEAMKNEGR 142

Query: 204 PFVIAGDFNRKINYLGNNDDFWKTIDPN---------------DSLIRFPKEKDSRCNAN 248
             V+ GD+N     +   +      +                        +         
Sbjct: 143 DIVVCGDWNIAHQNIDLKNWKGNQKNSGFLPEEREWIGKVIHKLGWTDMWRTLYPDVPGY 202

Query: 249 KNLRNK---------IPIDYFVMDQNAYKFLIQESFSEILYNEDDIKSRGKRLSDHCPIS 299
               N+           IDY ++        +                + ++ SDH P+ 
Sbjct: 203 TWWSNRGQAYAKDVGWRIDYQMVTPELAAKAVSAHV-----------YKDEKFSDHAPLV 251

Query: 300 IDYDF 304
           ++YD+
Sbjct: 252 VEYDY 256