PSIBLAST alignment of GI: 254781003 and protein with PDB id: 2v0r
>gi|152149537|pdb|2V0R|A Chain A, Crystal Structure Of A Hairpin Exchange Variant (Ltx) Of The Targeting Line-1 Retrotransposon Endonuclease Length = 240
>gi|152149538|pdb|2V0R|B Chain B, Crystal Structure Of A Hairpin Exchange Variant (Ltx) Of The Targeting Line-1 Retrotransposon Endonuclease Length = 240
Score = 51.5 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 31/293 (10%), Positives = 72/293 (24%), Gaps = 75/293 (25%)
Query: 24 VRLVSWNINTLSEQEGVSLWKNSVKRTTSDYTLLRQYAKNLDADIVFLQEMGSYNAVAKV 83
+ +++ NIN L+ + L + K+ D + +QE
Sbjct: 8 ITILTLNINGLN--------------SAIKRHRLASWIKSQDPSVCCIQET--------- 44
Query: 84 FPKNTWCIFYSTERLINHSKRDSNNDIHTAIAVRKKNVRVLQQSYPLLGAKDSFSRAGNR 143
+ + + +A+
Sbjct: 45 -HLTCRDTHRLKIKGWRKIYQANGKQKKAGVAIL-------VSDKTDFKPTKIKRDKEGH 96
Query: 144 RAVELLVEINGKKIWVLDIHLKSFCFLDSLENTYSPSCSLLSQQAQWLKDWITQKKESLV 203
+ + I +++ +L+I+ + + Q L+ +
Sbjct: 97 YIM-VKGSIQQEELTILNIYAPNTGAP-----------RFIKQVLSDLQRDLDSH----- 139
Query: 204 PFVIAGDFNRKINYLGN------NDDFWKTIDPNDSLIRFPKEKDSRCNANKNLRNKIP- 256
+I GDFN ++ L N D + + + + ++
Sbjct: 140 -TLIMGDFNTPLSTLDRSTRQKVNKDTQELNSALHQADLIDIYRTLHPKSTEYTYVRVRD 198
Query: 257 -------IDYFVMDQNAYKFLIQESFSEILYNEDDIKSRGKRLSDHCPISIDY 302
ID+ V + + LSDH I ++
Sbjct: 199 GHVSQSKIDHIVGSKALLSKCKRTEIIT------------NYLSDHSAIKLEL 239