PSIBLAST alignment of GI: 254781003 and protein with PDB id: 2v0s
>gi|152149539|pdb|2V0S|A Chain A, Crystal Structure Of A Hairpin Exchange Variant (Lr1) Of The Targeting Line-1 Retrotransposon Endonuclease Length = 236
Score = 56.9 bits (135), Expect = 4e-06, Method: Composition-based stats.
Identities = 31/289 (10%), Positives = 72/289 (24%), Gaps = 71/289 (24%)
Query: 24 VRLVSWNINTLSEQEGVSLWKNSVKRTTSDYTLLRQYAKNLDADIVFLQEMGSYNAVAKV 83
+ +++ NIN L+ + L + K+ D + +QE
Sbjct: 8 ITILTLNINGLN--------------SAIKRHRLASWIKSQDPSVCCIQET--------- 44
Query: 84 FPKNTWCIFYSTERLINHSKRDSNNDIHTAIAVRKKNVRVLQQSYPLLGAKDSFSRAGNR 143
+ + + +A+
Sbjct: 45 -HLTCRDTHRLKIKGWRKIYQANGKQKKAGVAIL-------VSDKTDFKPTKIKRDKEGH 96
Query: 144 RAVELLVEINGKKIWVLDIHLKSFCFLDSLENTYSPSCSLLSQQAQWLKDWITQKKESLV 203
+ + I +++ +L+I+ + + Q L+ +
Sbjct: 97 YIM-VKGSIQQEELTILNIYAPNTGAP-----------RFIKQVLSDLQRDLDSH----- 139
Query: 204 PFVIAGDFNRKINYLGNN---------DDFWKTIDPNDSLIRF-PKEKDSRCNANKNLRN 253
+I GDFN ++ L + + + D + + S
Sbjct: 140 -TLIMGDFNTPLSTLDRSTRQKVNKDTQELNSALHQADLIDIYRTLHPKSTEYTFSTANG 198
Query: 254 KIPIDYFVMDQNAYKFLIQESFSEILYNEDDIKSRGKRLSDHCPISIDY 302
+ ID+ V + + LSDH I ++
Sbjct: 199 ESKIDHIVGSKALLSKCKRTEIIT------------NYLSDHSAIKLEL 235