RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254781003|ref|YP_003065416.1| hypothetical protein CLIBASIA_04520 [Candidatus Liberibacter asiaticus str. psy62] (304 letters) >2ddr_A Sphingomyelin phosphodiesterase; DNAse I like folding, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.40A {Bacillus cereus} (A:) Length = 306 Score = 57.0 bits (135), Expect = 3e-09 Identities = 40/312 (12%), Positives = 93/312 (29%), Gaps = 33/312 (10%) Query: 17 TASVAQKVRLVSWNINTLSEQEGVSLWKNSVKRTTSDYTLLRQYAKNLDADIVFLQEMGS 76 + + +++++ N+ +S T L+ + D+V L E+ Sbjct: 3 STTQNDTLKVMTHNVY------MLSTNLYPNWGQTERADLIGAADYIKNQDVVILNEVFD 56 Query: 77 YNAVAKVFPKNTWCIFYSTERLINHSKRDSNNDIHTAIAVRKKNVRVLQQS--------Y 128 +A ++ T L S + + + + ++ V S Sbjct: 57 NSASDRLLGNLKKEYPNQTAVLGRSSGSEWDKTLGNYSSSTPEDGGVAIVSKWPIAEKIQ 116 Query: 129 PLLGAKDSFSRAGNRRAVELLVEINGKKIWVLDIHLKSFCFLDSLENTYSPSCSLLSQQA 188 + N+ V ++ N + + V+ HL++ DS+ SP+ +Q Sbjct: 117 YVFAKGCGPDNLSNKGFVYTKIKKNDRFVHVIGTHLQAE---DSMCGKTSPASVRTNQLK 173 Query: 189 QWLKDWITQKKESLVPFVIAGDFN--------RKINYLGNNDDFWKTIDPNDSLIRFPKE 240 + + + +I GD N + + P+ + + Sbjct: 174 EIQDFIKNKNIPNNEYVLIGGDMNVNKINAENNNDSEYASMFKTLNASVPSYTGHTATWD 233 Query: 241 KDSRCNANKNLRNKIP--IDYFVMDQNAYK------FLIQESFSEILYNEDDIKSRGKRL 292 + A N + +DY + ++ ++Q + K Sbjct: 234 ATTNSIAKYNFPDSPAEYLDYIIASKDHANPSYIENKVLQPKSPQWTVTSWFQKYTYNDY 293 Query: 293 SDHCPISIDYDF 304 SDH P+ Sbjct: 294 SDHYPVEATISM 305 >1zwx_A SMCL, sphingomyelinase-C; dnase1-like fold, beta-hairpin, hydrolase; 1.90A {Listeria ivanovii} (A:) Length = 301 Score = 56.5 bits (134), Expect = 4e-09 Identities = 34/306 (11%), Positives = 82/306 (26%), Gaps = 27/306 (8%) Query: 17 TASVAQKVRLVSWNINTLSEQEGVSLWKNSVKRTTSDYTLLRQYAKNLDADIVFLQEMGS 76 + ++ S N+ S L+ Q + D+V L E Sbjct: 4 SDEYPGNFKITSHNVY------LFSRNIYPNWGQMHRADLIAQADYMKNNDVVILNEAFD 57 Query: 77 YNAVAKVFPKNTWCIFYSTERLINHSKRDSNNDIHTAIAVRKKNVRVLQQSYPLLGAK-- 134 +A ++ + T + + + + + + +P++ Sbjct: 58 TSASHRLLNNLREMYPHQTPVIGRSKHGWDKTEGNYSNFALEDGGVAVVSQWPIVEKSQH 117 Query: 135 -----DSFSRAGNRRAVELLVEINGKKIWVLDIHLKSFCFLDSLENTYSPSCSLLSQQAQ 189 R N+ + + NGK ++ H ++ L S + + Q + Sbjct: 118 IFQRGGGADRLSNKGFAYVKIMKNGKPYHIIGTHTQADDSLISKDTSR---AIRAEQMQE 174 Query: 190 WLKDWITQKKESLVPFVIAGDFNRK-----INYLGNNDDFWKTIDPNDSLIRFPKEKDSR 244 + I GD N + + + + N + + +S Sbjct: 175 IQTFIAKKNIPKDEIIFIGGDLNVNYGTDEYHDMLKLLNVSSPANFNGQMATWDPTTNSM 234 Query: 245 CNANKNLRNKIPIDYFVMDQNAYK------FLIQESFSEILYNEDDIKSRGKRLSDHCPI 298 + +DY ++ + ++ + + SDH P+ Sbjct: 235 LKESYPKAAPEYLDYIFVENGHARPHSWHNKVLHTKSPQWSVKSWFKTYTYQDFSDHYPV 294 Query: 299 SIDYDF 304 D Sbjct: 295 VGFTDN 300 >3g6s_A Putative endonuclease/exonuclease/phosphatase family protein; alpha-beta protein, structural genomics, PSI-2; 2.50A {Bacteroides vulgatus atcc 8482} (A:) Length = 267 Score = 47.2 bits (110), Expect = 2e-06 Identities = 43/286 (15%), Positives = 79/286 (27%), Gaps = 32/286 (11%) Query: 23 KVRLVSWNINTLSEQEGVSLWKNSVKRTTSDYTLLRQYAKNLDADIVFLQEMGSYNAVAK 82 VR ++NI + Q+ ++ W+ R + Q+ K+ + DIV QE V Sbjct: 3 DVRWATFNIRYDNPQDSLNNWQYRKDR-------VCQFIKDHELDIVGXQE------VLH 49 Query: 83 VFPKNTWCIFYSTERLINHSKRDSNNDIHTAIAVRKKNVRVLQQSYPLLGAKDSFSRAGN 142 ++ + + + + RK VL + L Sbjct: 50 NQFQDLRAGLPEYDGIGVGRDDGKTAGEYAPLFYRKDKYEVLDSNTFWLAENPDSVGXXG 109 Query: 143 RRAVELLVEINGKKIWVLDIHLKSFCFLDSLENTYSPSCSLLSQQAQWLKDWITQKKESL 202 AV + + K + + +Q+ L ++ Sbjct: 110 WDAVCVRIATWAKFKDKATGKIFXAVNTH-----FDHVGEEARRQSALLIIRKIKEIVGE 164 Query: 203 VPFVIAGDFN----RKINYLGNNDDFWKTIDPNDSLIRFPKEKDSRCNANKNLRNKIPID 258 P V+ GDFN ++F + + A + ID Sbjct: 165 RPAVVTGDFNVTDASDAYETITTNEFVXKDAYKTAARVTGVDYTFHDFARIPAEDCEKID 224 Query: 259 YFVMDQNAYKFLIQESFSEILYNEDDIKSRGKRLSDHCPISIDYDF 304 + + + EI LSDH P D + Sbjct: 225 FIFVTPQ-----VLVKSCEIPAEV-----PEALLSDHNPQLADLEL 260 >1i9z_A Synaptojanin, phosphatidylinositol phosphate phosphatase; spsynaptojanin, IPP5C, IP3, IP2,, hydrolase; HET: 2IP; 1.80A {Schizosaccharomyces pombe} (A:18-321) Length = 304 Score = 45.1 bits (105), Expect = 1e-05 Identities = 39/302 (12%), Positives = 79/302 (26%), Gaps = 32/302 (10%) Query: 23 KVRLVSWNINTLSEQEGVSLWKNSVKRTTSDYTLLR-QYAKNLDADIVFLQEMGSYNAVA 81 K+ + S+N+N S + W +D ++ Q L V + Sbjct: 9 KIFVASYNLNGCSATTKLENWLFPENTPLADIYVVGFQEIVQLTPQQVISADPAKRREWE 68 Query: 82 KVFPKNTWCIFYSTERLINHSKRDSNNDIHTAIAVRKKNVRVLQQSYPLLGAKDSFSRAG 141 + S + I ++ + ++ + +G Sbjct: 69 SCVKRLLNGKCTSGPG-YVQLRSGQLVGTALMIFCKESCLPSIKNVEGTVKKTGLGGVSG 127 Query: 142 NRRAVELLVEINGKKIWVLDIHLKSFCFLDSLENTYSPSCSLLSQQAQWLKDWITQKKES 201 N+ AV + + + + HL + + A L+ + + Sbjct: 128 NKGAVAIRFDYEDTGLCFITSHLAAGYTNYDERDHD------YRTIASGLRFRRGRSIFN 181 Query: 202 LVPFVIAGDFNRKINYLGN------NDDFWKTIDPNDSLIRFPKEKDSRCNANKNLRNKI 255 V GDFN +I+ + D L + ++ Sbjct: 182 HDYVVWFGDFNYRISLTYEEVVPCIAQGKLSYLFEYDQLNKQMLTGKVFPFFSELPITFP 241 Query: 256 PIDYFVMDQNAY-------------KFLIQESFSEILYNEDDIKSRGKRLSDHCPISIDY 302 P F + + Y + L + Y + SDH PI Y Sbjct: 242 PTYKFDIGTDIYDTSDKHRVPAWTDRILYRGELVPHSYQSVPL-----YYSDHRPIYATY 296 Query: 303 DF 304 + Sbjct: 297 EA 298 >3l1w_A Uncharacterized protein; APC29019.2, conserved protein, enterococcus faecalis V583, PSI-2, MCSG, structural genomics; 1.60A {Enterococcus faecalis} (A:) Length = 257 Score = 44.5 bits (103), Expect = 2e-05 Identities = 24/283 (8%), Positives = 59/283 (20%), Gaps = 36/283 (12%) Query: 25 RLVSWNINTLSEQEGVSLWKNSVKRTTSDYTLLRQYAKNLDADIVFLQEMGSYNAVAKVF 84 ++ ++N+ +E + W + + Q D + +QE+ Sbjct: 2 KIATYNVRVDTEYDQDWQWSFRKEA-------VCQLINFHDWSLCCIQEVRPNQVRDLKA 54 Query: 85 PKNTWCIFYSTERLINHSKRDSNNDIHTAIAVRKKNVRVLQQSYPLLGAKDSFSRAGNRR 144 C + + + + L ++ Sbjct: 55 YTTFTC-LSAEREGDGQGEGLAILYNEQKVQAIDTGYFWLSETPQQPSIHPEAGCPRIAL 113 Query: 145 AVELLVEINGKKIWVLDIHLKSFCFLD---SLENTYSPSCSLLSQQAQWLKDWITQKKES 201 V+++HL ++Q L + Sbjct: 114 WGLFKETTQNTPFLVINVHLDHISAHARLAGXTVILEELHDKIAQYPTLLXGDFNAESGE 173 Query: 202 LVPFVIAGDFNRKINYLGNNDDFWKTIDPNDSLIRFPKEKDSRCNANKNLRNKIPIDYFV 261 V ++ F N + + + E+ + Sbjct: 174 EVHQLVQKKFQDSKNLATHYGPRGTFQNFTYTKPWAELEEIDYIYVKGWQVQQTASLTDS 233 Query: 262 MDQNAYKFLIQESFSEILYNEDDIKSRGKRLSDHCPISIDYDF 304 +D G+ SDH P+ + Sbjct: 234 ID-------------------------GRFPSDHFPLEAEVAG 251 >2o3h_A DNA-(apurinic or apyrimidinic site) lyase; APE, endonuclease; 1.90A {Homo sapiens} PDB: 1bix_A 1dew_A* 1de8_B* 1de9_A* 2o3c_A (A:) Length = 285 Score = 42.9 bits (99), Expect = 6e-05 Identities = 38/290 (13%), Positives = 77/290 (26%), Gaps = 36/290 (12%) Query: 21 AQKVRLVSWNINTLSEQEGVSLWKNSVKRTTSDYTLLRQYAKNLDADIVFLQEMGSYNAV 80 +++ SWN++ L K+ + K DI+ LQE Sbjct: 26 PATLKIASWNVD--------GLRAWIKKK-------GLDWVKEEAPDILCLQETKCSENK 70 Query: 81 AKVFPKNTWCIFYSTERLINHSKRDSNNDIHTAIAVRKKNVRVLQQSYPLLGAKDSFSRA 140 + + + + + S + R+ ++V ++ Sbjct: 71 LPAELQELPGLSHQYWSAPSDKEGYS----GVGLLSRQCPLKVSYGIGDEEHDQEGRVIV 126 Query: 141 GNRRAV---ELLVEINGKKIWVLDIHLKSFCFLDSLENTYSPSCSLLSQQAQWLKDWITQ 197 + V G+ + L+ + + L+ + Sbjct: 127 AEFDSFVLVTAYVPNAGRGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEID 186 Query: 198 KKESLVPFVIAGDFNRKINYLGNNDDFWKTIDPNDSLIRFPKEKDSRCNANKNLRNKIP- 256 + AG ++ G D L + N R+K Sbjct: 187 LRNPKGNKKNAGFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTFWTYMMNARSKNVG 246 Query: 257 --IDYFVMDQNAYKFLIQESFSEILYNEDDIKSRGKRLSDHCPISIDYDF 304 +DYF++ + L S+I SDHCPI++ Sbjct: 247 WRLDYFLLSHS---LLPALCDSKIR--------SKALGSDHCPITLYLAL 285 >1hd7_A DNA-(apurinic or apyrimidinic site) lyase; DNA repair, endonuclease, APE1, HAP1, REF-1; 1.95A {Homo sapiens} (A:) Length = 318 Score = 41.7 bits (96), Expect = 1e-04 Identities = 35/294 (11%), Positives = 74/294 (25%), Gaps = 44/294 (14%) Query: 21 AQKVRLVSWNINTLSEQEGVSLWKNSVKRTTSDYTLLRQYAKNLDADIVFLQEMGSYNAV 80 +++ SWN++ L + K DI+ LQE Sbjct: 59 PATLKICSWNVD--------GLR-------AWIKKKGLDWVKEEAPDILCLQETKCSENK 103 Query: 81 AKVFPKNTWCIFYSTERLINHSKRDSNNDIHTAIAVRKKNVRVLQQSYPLLGAKDSFSRA 140 + + + + + S + R+ ++V ++ Sbjct: 104 LPAELQELPGLSHQYWSAPSDKEGYSGV----GLLSRQCPLKVSYGIGDEEHDQEGRVIV 159 Query: 141 GNRRAVELLVEINGKKIWVLDIHLKSFCFLDSLENTYSPSCSLLSQQAQWLKDWITQKKE 200 + L+ L + ++ S + ++ + Sbjct: 160 AEFDSFVLVTAYVPNAGRGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEID 219 Query: 201 SLVPFVIAGD----------FNRKINYLGNNDDFWKTIDPNDSLIRFPKEKDSRCNANKN 250 P + F + + D F F + + N Sbjct: 220 LRNPKGNKKNAGFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTFWTYMMNARSKNVG 279 Query: 251 LRNKIPIDYFVMDQNAYKFLIQESFSEILYNEDDIKSRGKRLSDHCPISIDYDF 304 R +DYF++ + L S+I SDHCPI++ Sbjct: 280 WR----LDYFLLSHS---LLPALCDSKIR--------SKALGSDHCPITLYLAL 318 >1ako_A Exonuclease III; AP-endonuclease, DNA repair; 1.70A {Escherichia coli} (A:) Length = 268 Score = 37.9 bits (86), Expect = 0.002 Identities = 40/299 (13%), Positives = 77/299 (25%), Gaps = 55/299 (18%) Query: 25 RLVSWNINTLSEQEGVSLWKNSVKRTTSDYTLLRQYAKNLDADIVFLQE----------- 73 + VS+NIN + + L + D++ LQE Sbjct: 2 KFVSFNING---------LRARPHQ-------LEAIVEKHQPDVIGLQETKVHDDMFPLE 45 Query: 74 ----------MGSYNAVAKVFPKNTWCIFYSTERLINHSKRDSNNDIHTAIAVRKKNVRV 123 V + I I NV V Sbjct: 46 EVAKLGYNVFYHGQKGHYGVALLTKETPIAVRRGFPGDDEEAQRRIIMAEIPSLLGNVTV 105 Query: 124 LQQSYPLLGAKDSFSRAGNRRAVELLVEINGKKIWVLDIHLKSFCFLDSLENTYSPSCSL 183 + +P ++D + + ++ + D + + SP+ Sbjct: 106 INGYFPQGESRDHPIKFPAKAQFYQNLQNYLETELKRDNPVLIM-----GDMNISPTDLD 160 Query: 184 LSQQAQWLKDWITQKKESLVPFVIAGDFNRKINYLGNNDDFWKTIDPNDSLIRFPKEKDS 243 + + K W+ K S ++ ++ G D F + + Sbjct: 161 IGIGEENRKRWLRTGKCS--FLPEEREWMDRLMSWGLVDTFRHANPQTADRFSWFDYRSK 218 Query: 244 RCNANKNLRNKIPIDYFVMDQNAYKFLIQESFSEILYNEDDIKSRGKRLSDHCPISIDY 302 + N+ LR ID + Q + I Y ++ SDH P+ + Sbjct: 219 GFDDNRGLR----IDLLLASQP---LAECCVETGIDYEIRS----MEKPSDHAPVWATF 266 >2jc5_A Exodeoxyribonuclease; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: BCN DIO GOL; 1.50A {Neisseria meningitidis} (A:) Length = 259 Score = 37.1 bits (84), Expect = 0.003 Identities = 35/299 (11%), Positives = 81/299 (27%), Gaps = 64/299 (21%) Query: 25 RLVSWNINTLSEQEGVSLWKNSVKRTTSDYTLLRQYAKNLDADIVFLQE----------- 73 +++S N+N + K +Y ADIV +QE Sbjct: 3 KIISANVN--------GIRSAYKKG-------FYEYIAASGADIVCVQELKAQEADLSAD 47 Query: 74 -----MGSYNAVAKVFPKNTWCIFYSTERLINHSK---RDSNNDIHTAIAVRKKNVRVLQ 125 + + YS + N + + + + V+ Sbjct: 48 MKNPHGMHGHWHCAEKRGYSGVAVYSKRKPDNVQIGMGIEEFDREGRFVRCDFGRLSVIS 107 Query: 126 QSYPLLGAKDSFSRAGNRRAVELLVEINGKKIWVLDIHLKSFCFLDSLENTYSPSCSLLS 185 P + R ++ + + + + + + L Sbjct: 108 LYLP-------SGSSAEERQQVKYRFLDAFYPMLEAMKNEGRDIVVCGDWNIAHQNIDLK 160 Query: 186 QQAQWLKDWITQKKESLVPFVIAGDFNRKINYLGNNDDFWKTIDPNDSLIRFPKEKDSRC 245 K+ +E + I+ LG D + + P+ + + Sbjct: 161 NWKGNQKNSGFLPEER-------EWIGKVIHKLGWTDMWRT-LYPDVPGYTWWSNRGQAY 212 Query: 246 NANKNLRNKIPIDYFVMDQNAYKFLIQESFSEILYNEDDIKSRGKRLSDHCPISIDYDF 304 + R IDY ++ + + + + ++ SDH P+ ++YD+ Sbjct: 213 AKDVGWR----IDYQMVTPE---LAAKAVSAHVY--------KDEKFSDHAPLVVEYDY 256 >2ei9_A Non-LTR retrotransposon R1BMKS ORF2 protein; four layered alpha beta sandwich, gene regulation; 2.00A {Bombyx mori} (A:) Length = 240 Score = 36.1 bits (82), Expect = 0.006 Identities = 15/108 (13%), Positives = 34/108 (31%), Gaps = 17/108 (15%) Query: 23 KVRLVSWNINTLSEQEGVSLWKNSVKRTTSDYTLLRQYAKNLDADIVFLQEMGSYNAVAK 82 ++R+ N+ R L A++L DIV +QE S Sbjct: 7 RLRIGQINLGGA----------EDATRE------LPSIARDLGLDIVLVQEQYSMVGFLA 50 Query: 83 VFPKNTWCIFYSTERLINHSKRDSNNDIHTA-IAVRKKNVRVLQQSYP 129 + Y R++ + + H + + ++ ++ + Sbjct: 51 QCGAHPKAGVYIRNRVLPCAVLHHLSSTHITVVHIGGWDLYMVSAYFQ 98 >2jc4_A Exodeoxyribonuclease III; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: 1PE; 1.90A {Neisseria meningitidis} (A:) Length = 256 Score = 35.6 bits (80), Expect = 0.009 Identities = 35/297 (11%), Positives = 80/297 (26%), Gaps = 59/297 (19%) Query: 25 RLVSWNINTLSEQEGVSLWKNSVKRTTSDYTLLRQYAKNLDADIVFLQEM---------- 74 ++ +WN+N+ + + ++ + DI+ LQE+ Sbjct: 2 KITTWNVNS---------LNVRLPQ-------VQNLLADNPPDILVLQELKLDQDKFPAA 45 Query: 75 --GSYNAVAKVFPKNTW-----CIFYSTERLINHSKRDSNNDIHTAIAVRKKNVRVLQQS 127 + T+ + + ++ IA VRV+ Sbjct: 46 ALQMMGWHCVWSGQKTYNGVAIVSRSVPQDVHFGLPALPDDPQRRVIAATVSGVRVINVY 105 Query: 128 YPLLGAKDSFSRAGNRRAVELLVEINGKKIWVLDIHLKSFCFLDSLENTYSPSCSLLSQQ 187 A DS + L E ++ + F +P+ + Sbjct: 106 CVNGEALDSPKFKYKEQWFAALTEFVRDEMTRHGKLVLLGDF------NIAPADADCYDP 159 Query: 188 AQWLKDWITQKKESLVPFVIAGDFNRKINYLGNNDDFWKTIDPNDSLIRFPKEKDSRCNA 247 +W + E + D + + P + + + + Sbjct: 160 EKWHEKIHCSSVE---------RQWFQNLLDLGLTDSLRQVHPEGAFYTWFDYRGAMFQR 210 Query: 248 NKNLRNKIPIDYFVMDQNAYKFLIQESFSEILYNEDDIKSRGKRLSDHCPISIDYDF 304 LR ID+ ++ + +R SDH P++ ++D+ Sbjct: 211 KLGLR----IDHILVSPA---MAAALKDVRVDLETRA----LERPSDHAPVTAEFDW 256 >1wdu_A TRAS1 ORF2P; four-layered alpha/beta sandwich, RNA binding protein; 2.40A {Bombyx mori} (A:) Length = 245 Score = 35.1 bits (79), Expect = 0.011 Identities = 30/283 (10%), Positives = 60/283 (21%), Gaps = 57/283 (20%) Query: 22 QKVRLVSWNINTLSEQEGVSLWKNSVKRTTSDYTLLRQYAKNLDADIVFLQEMGSYNAVA 81 R++ N+ L A A I +QE Sbjct: 18 PPYRVLQANLQRKK----------------LATAELAIEAATRKAAIALIQEP---YVGG 58 Query: 82 KVFPKNTWCIFYSTERLINHSKRDSNNDIHTAIAVRKKNVRVLQQSYPLLGAKDSFSRAG 141 K + S + + AIAV ++ V+Q Sbjct: 59 AKSMKGFR------GVRVFQSTAQGDGTVKAAIAVFDHDLDVIQY--------------- 97 Query: 142 NRRAVELLVEINGKKIWVLDIHLKSFCFLDSLENTYSPSCSLLSQQAQWLKDWITQKKES 201 + N + + + P S L Q + + ++ Sbjct: 98 ------PQLTTNNIVVVGIRTRAWEITLVSYYFEPDKPIESYLEQIKRVERKMGPKRLIF 151 Query: 202 LVPFVIAGDFNRKINYLGNNDDFWKTIDPNDSLIRFPKEKDSRCNANKNLRNKIPIDYFV 261 + D T+ I + + R + +D Sbjct: 152 GGDANAKSTWWGSKEDDARGDQLMGTLGELGLHILNEGDVPTFDTIRGGKRYQSRVDVTF 211 Query: 262 MDQNAYKFLIQESFSEILYNEDDIKSRGKRLSDHCPISIDYDF 304 ++ L + + SDH + + Sbjct: 212 CTED---MLDLIDGWRVDEDL--------VSSDHNGMVFNIRL 243 >2j63_A AP-endonuclease; base excision repair, lyase; 2.48A {Leishmania major} (A:135-232,A:440-467) Length = 126 Score = 34.6 bits (79), Expect = 0.018 Identities = 11/53 (20%), Positives = 22/53 (41%), Gaps = 12/53 (22%) Query: 21 AQKVRLVSWNINTLSEQEGVSLWKNSVKRTTSDYTLLRQYAKNLDADIVFLQE 73 ++ + ++WN+ L L K + LR + + D++ LQE Sbjct: 13 SRMYKFITWNVAGLR-----GLLKKNASA-------LRAFMEAEKPDVLCLQE 53 >1vyb_A ORF2 contains A reverse transcriptase domain; endonuclease, APE-1 type, retrotransposition, retrotransposon, transferase; 1.8A {Homo sapiens} (A:) Length = 238 Score = 34.1 bits (76), Expect = 0.026 Identities = 32/282 (11%), Positives = 69/282 (24%), Gaps = 49/282 (17%) Query: 21 AQKVRLVSWNINTLSEQEGVSLWKNSVKRTTSDYTLLRQYAKNLDADIVFLQEMGSYNAV 80 + +++ NIN L + L + K+ D + +QE Sbjct: 5 NSHITILTLNINGL--------------NSAIKRHRLASWIKSQDPSVCCIQETHLTC-- 48 Query: 81 AKVFPKNTWCIFYSTERLINHSKRDSNNDIHTAIAVRKKNVRVLQQSYPLLGAKDSFSRA 140 + AI V K + Sbjct: 49 ------RDTHRLKIKGWRKIYQANGKQKKAGVAILVSDKTDFKPTKIKRD---------- 92 Query: 141 GNRRAVELLVEINGKKIWVLDIHLKSFCFLDSLENTYSPSCSLLSQQAQWLKDWITQKKE 200 + + I +++ +L+I+ + ++ S L + D+ T Sbjct: 93 KEGHYIMVKGSIQQEELTILNIYAPNTGAPRFIKQVLSDLQRDLDSHTLIMGDFNTPLST 152 Query: 201 SLVPFVIAGDFNRKINYLGNNDDFWKTIDPNDSLIRFPKEKDSRCNANKNLRNKIPIDYF 260 + + + + D D + + ID+ Sbjct: 153 LDRSTRQKVNKDTQ-----ELNSALHQADLIDIYRTLHPKSTEYTFFSAPHHTYSKIDHI 207 Query: 261 VMDQNAYKFLIQESFSEILYNEDDIKSRGKRLSDHCPISIDY 302 V + + +EI+ LSDH I ++ Sbjct: 208 VGSKALLSKCKR---TEIIT---------NYLSDHSAIKLEL 237 >2imq_X Salivary nitrophorin; ferrous heme, beta-sandwich, transport protein; HET: HEM; 1.30A {Cimex lectularius} (X:) Length = 282 Score = 33.9 bits (76), Expect = 0.030 Identities = 29/299 (9%), Positives = 67/299 (22%), Gaps = 43/299 (14%) Query: 23 KVRLVSWNINTLSEQEGVSLWKNSVKRTTSDYTLLRQYAKNLDADIVFLQEMGSYNAVAK 82 V VSWN + + D V +Q G Sbjct: 8 SVHTVSWNSGHERAPTNLEELLGLNSG------------ETPDVIAVAVQGFGFQTD-KP 54 Query: 83 VFPKNTWCIFYSTERLINHSKRDSNNDIHTAIAVRKKNVRVLQQSYPLLGAKDSFSRAGN 142 F S ++K + + V + Q + + Sbjct: 55 QQGPACVKNFQSLLTSKGYTKLKNTITETMGLTVYCLEKHLDQNTLKNETIIVTVDDQKK 114 Query: 143 RRAVELLVEINGKKIWVLDIHLKSFCFLDSLENTYSPSCSLLSQQAQWLKDWI--TQKKE 200 + I K+ + S + + ++K + Sbjct: 115 SGGIVTSFTIYNKRFSFTTSRM-------------SDEDVTSTNTKYAYDTRLDYSKKDD 161 Query: 201 SLVPFVIAGDFNRKINYLGNNDDFWKTIDPNDSLIRFPKEKDSRCNANKNLRNKIPID-- 258 GD N ++ + + D L+ F + K ++ + + + Sbjct: 162 PSDFLFWIGDLNVRVETNATHAKSLVDQNNIDGLMAFDQLKKAKEQKLFDGWTEPQVTFK 221 Query: 259 -----------YFVMDQNAYKFLIQESFSEILYNED-DIKSRGK-RLSDHCPISIDYDF 304 Y + ++ + S + ++H P+ + Sbjct: 222 PTYKFKPNTDEYDLSATPSWTDRALYKSGTGKTIQPLSYNSLTNYKQTEHRPVLAKFRV 280 >2voa_A AF_EXO, XTHA, exodeoxyribonuclease III; EXOIII, AP endonuclease, lyase; 1.7A {Archaeoglobus fulgidus} (A:) Length = 257 Score = 33.7 bits (75), Expect = 0.032 Identities = 29/284 (10%), Positives = 66/284 (23%), Gaps = 35/284 (12%) Query: 25 RLVSWNINTLSEQEGVSLWKNSVKRTTSDYTLLRQYAKNLDADIVFLQEMGSYNAVAKVF 84 ++ ++N+N+ ++ + + + K DI+ +QE Sbjct: 3 KIATFNVNS---------IRSRLHI-------VIPWLKENKPDILCMQE------TKVEN 40 Query: 85 PKNTWCIFYSTERLINHSKRDSNNDIHTAIAVRKKNVRVLQQSYPLLGAKDSFSRAGNRR 144 K F+ + S N + A ++V S P + ++ Sbjct: 41 RKFPEADFHRIGYHVVFSGSKGRNGVAIASLEEPEDVSFGLDSEPKDEDRLIRAKIAGID 100 Query: 145 AVELLVEINGKKIWVLDIHLKSFCFLDSLENTYSPSCSLLSQQAQWLKDWITQKKESLVP 204 + V G KI K + + + P Sbjct: 101 VINTYV-PQGFKIDSEKYQYKLQWLERLYHYLQKTVDFRSFAVWCGDMNVAPEPIDVHSP 159 Query: 205 FVIAGDFNRKINYLGNNDDFWKTI--DPNDSLIRFPKEKDSRCNANKNLRNKIP---IDY 259 + + + D + + K + D Sbjct: 160 DKLKNHVXFHEDARRAYKKILELGFVDVLRKIHPNERIYTFYDYRVKGAIERGLGWRGDA 219 Query: 260 FVMDQNAYKFLIQESFSEILYNEDDIKSRGKRLSDHCPISIDYD 303 + + ++ SDH P+ +D Sbjct: 220 ILATPP---LAERCVDCYADIKPRL----AEKPSDHLPLVAVFD 256 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} (B:1772-1800,B:1916-2006) Length = 120 Score = 28.2 bits (63), Expect = 1.2 Identities = 7/32 (21%), Positives = 12/32 (37%), Gaps = 8/32 (25%) Query: 79 AVAKVFPKNTWC--IFYSTER---LINHSKRD 105 ++A V + +FY R + RD Sbjct: 1 SLADVMSIESLVEVVFY---RGMTMQVAVPRD 29 Score = 26.7 bits (59), Expect = 3.8 Identities = 5/15 (33%), Positives = 8/15 (53%) Query: 66 ADIVFLQEMGSYNAV 80 ++VF + M AV Sbjct: 12 VEVVFYRGMTMQVAV 26 >2gdt_A Leader protein; P65 homolog; NSP1 (EC 3.4.22.-); beta-barrel, alpha-beta, replicase, structural genomics, PSI-2, protein structure initiative; NMR {Sars coronavirus} (A:) Length = 116 Score = 27.3 bits (60), Expect = 2.9 Identities = 14/61 (22%), Positives = 28/61 (45%) Query: 94 STERLINHSKRDSNNDIHTAIAVRKKNVRVLQQSYPLLGAKDSFSRAGNRRAVELLVEIN 153 S E ++ ++ N + + K + L+Q Y + D+ S + VEL+ E++ Sbjct: 23 SVEEALSEAREHLKNGTCGLVELEKGVLPQLEQPYVFIKRSDALSTNHGHKVVELVAEMD 82 Query: 154 G 154 G Sbjct: 83 G 83 >2f1n_A CDT B, cytolethal distending toxin subunit B; E.coli, DNAse I, microbatch; 1.73A {Escherichia coli} (A:) Length = 262 Score = 27.1 bits (60), Expect = 3.2 Identities = 41/211 (19%), Positives = 75/211 (35%), Gaps = 59/211 (27%) Query: 24 VRLVSWNINTLSEQEGVSLWKNSVKRTTSDYTLLRQYAKNLDADIVFLQEMGSYNAVA-- 81 R+ +WN+ S S W +V++ L+ DI+ +QE GS + A Sbjct: 16 FRVATWNLQGASATTE-SKWNINVRQ------LISGEN---AVDILAVQEAGSPPSTAVD 65 Query: 82 --KVFP-------KNTWCIFYST---ERLINHSKRDSN-NDIHTAIAVRKK--NVRVLQQ 126 +V P + W + ++ + I S D+ ++ A+ ++ V VL Sbjct: 66 TGRVIPSPGIPVRELIWNLSTNSRPQQVYIYFSAVDALGGRVNLALVSNRRADEVFVLSP 125 Query: 127 SY----PLLGAKDSFSRAGNRRAVELLVEINGKKIWVLDIHLKSFCFLDSLENTYSPSCS 182 PLLG R GN H ++ + + + Sbjct: 126 VRQGGRPLLGI-----RIGN--------------DAFFTAH--------AIAMRNNDAPA 158 Query: 183 LLSQQAQWLKDWITQKKESLVPFVIAGDFNR 213 L+ + + +D + ++I GDFNR Sbjct: 159 LVEEVYNFFRD-SRDPVHQALNWMILGDFNR 188 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.321 0.135 0.408 Gapped Lambda K H 0.267 0.0355 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 2,246,109 Number of extensions: 97610 Number of successful extensions: 286 Number of sequences better than 10.0: 1 Number of HSP's gapped: 267 Number of HSP's successfully gapped: 29 Length of query: 304 Length of database: 4,956,049 Length adjustment: 88 Effective length of query: 216 Effective length of database: 1,981,209 Effective search space: 427941144 Effective search space used: 427941144 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 54 (25.6 bits)