RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|254781003|ref|YP_003065416.1| hypothetical protein
CLIBASIA_04520 [Candidatus Liberibacter asiaticus str. psy62]
(304 letters)
>2ddr_A Sphingomyelin phosphodiesterase; DNAse I like folding, riken
structural genomics/proteomics initiative, RSGI,
structural genomics, hydrolase; 1.40A {Bacillus cereus}
(A:)
Length = 306
Score = 57.0 bits (135), Expect = 3e-09
Identities = 40/312 (12%), Positives = 93/312 (29%), Gaps = 33/312 (10%)
Query: 17 TASVAQKVRLVSWNINTLSEQEGVSLWKNSVKRTTSDYTLLRQYAKNLDADIVFLQEMGS 76
+ + +++++ N+ +S T L+ + D+V L E+
Sbjct: 3 STTQNDTLKVMTHNVY------MLSTNLYPNWGQTERADLIGAADYIKNQDVVILNEVFD 56
Query: 77 YNAVAKVFPKNTWCIFYSTERLINHSKRDSNNDIHTAIAVRKKNVRVLQQS--------Y 128
+A ++ T L S + + + + ++ V S
Sbjct: 57 NSASDRLLGNLKKEYPNQTAVLGRSSGSEWDKTLGNYSSSTPEDGGVAIVSKWPIAEKIQ 116
Query: 129 PLLGAKDSFSRAGNRRAVELLVEINGKKIWVLDIHLKSFCFLDSLENTYSPSCSLLSQQA 188
+ N+ V ++ N + + V+ HL++ DS+ SP+ +Q
Sbjct: 117 YVFAKGCGPDNLSNKGFVYTKIKKNDRFVHVIGTHLQAE---DSMCGKTSPASVRTNQLK 173
Query: 189 QWLKDWITQKKESLVPFVIAGDFN--------RKINYLGNNDDFWKTIDPNDSLIRFPKE 240
+ + + +I GD N + + P+ + +
Sbjct: 174 EIQDFIKNKNIPNNEYVLIGGDMNVNKINAENNNDSEYASMFKTLNASVPSYTGHTATWD 233
Query: 241 KDSRCNANKNLRNKIP--IDYFVMDQNAYK------FLIQESFSEILYNEDDIKSRGKRL 292
+ A N + +DY + ++ ++Q + K
Sbjct: 234 ATTNSIAKYNFPDSPAEYLDYIIASKDHANPSYIENKVLQPKSPQWTVTSWFQKYTYNDY 293
Query: 293 SDHCPISIDYDF 304
SDH P+
Sbjct: 294 SDHYPVEATISM 305
>1zwx_A SMCL, sphingomyelinase-C; dnase1-like fold, beta-hairpin,
hydrolase; 1.90A {Listeria ivanovii} (A:)
Length = 301
Score = 56.5 bits (134), Expect = 4e-09
Identities = 34/306 (11%), Positives = 82/306 (26%), Gaps = 27/306 (8%)
Query: 17 TASVAQKVRLVSWNINTLSEQEGVSLWKNSVKRTTSDYTLLRQYAKNLDADIVFLQEMGS 76
+ ++ S N+ S L+ Q + D+V L E
Sbjct: 4 SDEYPGNFKITSHNVY------LFSRNIYPNWGQMHRADLIAQADYMKNNDVVILNEAFD 57
Query: 77 YNAVAKVFPKNTWCIFYSTERLINHSKRDSNNDIHTAIAVRKKNVRVLQQSYPLLGAK-- 134
+A ++ + T + + + + + + +P++
Sbjct: 58 TSASHRLLNNLREMYPHQTPVIGRSKHGWDKTEGNYSNFALEDGGVAVVSQWPIVEKSQH 117
Query: 135 -----DSFSRAGNRRAVELLVEINGKKIWVLDIHLKSFCFLDSLENTYSPSCSLLSQQAQ 189
R N+ + + NGK ++ H ++ L S + + Q +
Sbjct: 118 IFQRGGGADRLSNKGFAYVKIMKNGKPYHIIGTHTQADDSLISKDTSR---AIRAEQMQE 174
Query: 190 WLKDWITQKKESLVPFVIAGDFNRK-----INYLGNNDDFWKTIDPNDSLIRFPKEKDSR 244
+ I GD N + + + + N + + +S
Sbjct: 175 IQTFIAKKNIPKDEIIFIGGDLNVNYGTDEYHDMLKLLNVSSPANFNGQMATWDPTTNSM 234
Query: 245 CNANKNLRNKIPIDYFVMDQNAYK------FLIQESFSEILYNEDDIKSRGKRLSDHCPI 298
+ +DY ++ + ++ + + SDH P+
Sbjct: 235 LKESYPKAAPEYLDYIFVENGHARPHSWHNKVLHTKSPQWSVKSWFKTYTYQDFSDHYPV 294
Query: 299 SIDYDF 304
D
Sbjct: 295 VGFTDN 300
>3g6s_A Putative endonuclease/exonuclease/phosphatase family
protein; alpha-beta protein, structural genomics, PSI-2;
2.50A {Bacteroides vulgatus atcc 8482} (A:)
Length = 267
Score = 47.2 bits (110), Expect = 2e-06
Identities = 43/286 (15%), Positives = 79/286 (27%), Gaps = 32/286 (11%)
Query: 23 KVRLVSWNINTLSEQEGVSLWKNSVKRTTSDYTLLRQYAKNLDADIVFLQEMGSYNAVAK 82
VR ++NI + Q+ ++ W+ R + Q+ K+ + DIV QE V
Sbjct: 3 DVRWATFNIRYDNPQDSLNNWQYRKDR-------VCQFIKDHELDIVGXQE------VLH 49
Query: 83 VFPKNTWCIFYSTERLINHSKRDSNNDIHTAIAVRKKNVRVLQQSYPLLGAKDSFSRAGN 142
++ + + + + RK VL + L
Sbjct: 50 NQFQDLRAGLPEYDGIGVGRDDGKTAGEYAPLFYRKDKYEVLDSNTFWLAENPDSVGXXG 109
Query: 143 RRAVELLVEINGKKIWVLDIHLKSFCFLDSLENTYSPSCSLLSQQAQWLKDWITQKKESL 202
AV + + K + + +Q+ L ++
Sbjct: 110 WDAVCVRIATWAKFKDKATGKIFXAVNTH-----FDHVGEEARRQSALLIIRKIKEIVGE 164
Query: 203 VPFVIAGDFN----RKINYLGNNDDFWKTIDPNDSLIRFPKEKDSRCNANKNLRNKIPID 258
P V+ GDFN ++F + + A + ID
Sbjct: 165 RPAVVTGDFNVTDASDAYETITTNEFVXKDAYKTAARVTGVDYTFHDFARIPAEDCEKID 224
Query: 259 YFVMDQNAYKFLIQESFSEILYNEDDIKSRGKRLSDHCPISIDYDF 304
+ + + EI LSDH P D +
Sbjct: 225 FIFVTPQ-----VLVKSCEIPAEV-----PEALLSDHNPQLADLEL 260
>1i9z_A Synaptojanin, phosphatidylinositol phosphate phosphatase;
spsynaptojanin, IPP5C, IP3, IP2,, hydrolase; HET: 2IP;
1.80A {Schizosaccharomyces pombe} (A:18-321)
Length = 304
Score = 45.1 bits (105), Expect = 1e-05
Identities = 39/302 (12%), Positives = 79/302 (26%), Gaps = 32/302 (10%)
Query: 23 KVRLVSWNINTLSEQEGVSLWKNSVKRTTSDYTLLR-QYAKNLDADIVFLQEMGSYNAVA 81
K+ + S+N+N S + W +D ++ Q L V +
Sbjct: 9 KIFVASYNLNGCSATTKLENWLFPENTPLADIYVVGFQEIVQLTPQQVISADPAKRREWE 68
Query: 82 KVFPKNTWCIFYSTERLINHSKRDSNNDIHTAIAVRKKNVRVLQQSYPLLGAKDSFSRAG 141
+ S + I ++ + ++ + +G
Sbjct: 69 SCVKRLLNGKCTSGPG-YVQLRSGQLVGTALMIFCKESCLPSIKNVEGTVKKTGLGGVSG 127
Query: 142 NRRAVELLVEINGKKIWVLDIHLKSFCFLDSLENTYSPSCSLLSQQAQWLKDWITQKKES 201
N+ AV + + + + HL + + A L+ + +
Sbjct: 128 NKGAVAIRFDYEDTGLCFITSHLAAGYTNYDERDHD------YRTIASGLRFRRGRSIFN 181
Query: 202 LVPFVIAGDFNRKINYLGN------NDDFWKTIDPNDSLIRFPKEKDSRCNANKNLRNKI 255
V GDFN +I+ + D L + ++
Sbjct: 182 HDYVVWFGDFNYRISLTYEEVVPCIAQGKLSYLFEYDQLNKQMLTGKVFPFFSELPITFP 241
Query: 256 PIDYFVMDQNAY-------------KFLIQESFSEILYNEDDIKSRGKRLSDHCPISIDY 302
P F + + Y + L + Y + SDH PI Y
Sbjct: 242 PTYKFDIGTDIYDTSDKHRVPAWTDRILYRGELVPHSYQSVPL-----YYSDHRPIYATY 296
Query: 303 DF 304
+
Sbjct: 297 EA 298
>3l1w_A Uncharacterized protein; APC29019.2, conserved protein,
enterococcus faecalis V583, PSI-2, MCSG, structural
genomics; 1.60A {Enterococcus faecalis} (A:)
Length = 257
Score = 44.5 bits (103), Expect = 2e-05
Identities = 24/283 (8%), Positives = 59/283 (20%), Gaps = 36/283 (12%)
Query: 25 RLVSWNINTLSEQEGVSLWKNSVKRTTSDYTLLRQYAKNLDADIVFLQEMGSYNAVAKVF 84
++ ++N+ +E + W + + Q D + +QE+
Sbjct: 2 KIATYNVRVDTEYDQDWQWSFRKEA-------VCQLINFHDWSLCCIQEVRPNQVRDLKA 54
Query: 85 PKNTWCIFYSTERLINHSKRDSNNDIHTAIAVRKKNVRVLQQSYPLLGAKDSFSRAGNRR 144
C + + + + L ++
Sbjct: 55 YTTFTC-LSAEREGDGQGEGLAILYNEQKVQAIDTGYFWLSETPQQPSIHPEAGCPRIAL 113
Query: 145 AVELLVEINGKKIWVLDIHLKSFCFLD---SLENTYSPSCSLLSQQAQWLKDWITQKKES 201
V+++HL ++Q L +
Sbjct: 114 WGLFKETTQNTPFLVINVHLDHISAHARLAGXTVILEELHDKIAQYPTLLXGDFNAESGE 173
Query: 202 LVPFVIAGDFNRKINYLGNNDDFWKTIDPNDSLIRFPKEKDSRCNANKNLRNKIPIDYFV 261
V ++ F N + + + E+ +
Sbjct: 174 EVHQLVQKKFQDSKNLATHYGPRGTFQNFTYTKPWAELEEIDYIYVKGWQVQQTASLTDS 233
Query: 262 MDQNAYKFLIQESFSEILYNEDDIKSRGKRLSDHCPISIDYDF 304
+D G+ SDH P+ +
Sbjct: 234 ID-------------------------GRFPSDHFPLEAEVAG 251
>2o3h_A DNA-(apurinic or apyrimidinic site) lyase; APE,
endonuclease; 1.90A {Homo sapiens} PDB: 1bix_A 1dew_A*
1de8_B* 1de9_A* 2o3c_A (A:)
Length = 285
Score = 42.9 bits (99), Expect = 6e-05
Identities = 38/290 (13%), Positives = 77/290 (26%), Gaps = 36/290 (12%)
Query: 21 AQKVRLVSWNINTLSEQEGVSLWKNSVKRTTSDYTLLRQYAKNLDADIVFLQEMGSYNAV 80
+++ SWN++ L K+ + K DI+ LQE
Sbjct: 26 PATLKIASWNVD--------GLRAWIKKK-------GLDWVKEEAPDILCLQETKCSENK 70
Query: 81 AKVFPKNTWCIFYSTERLINHSKRDSNNDIHTAIAVRKKNVRVLQQSYPLLGAKDSFSRA 140
+ + + + + S + R+ ++V ++
Sbjct: 71 LPAELQELPGLSHQYWSAPSDKEGYS----GVGLLSRQCPLKVSYGIGDEEHDQEGRVIV 126
Query: 141 GNRRAV---ELLVEINGKKIWVLDIHLKSFCFLDSLENTYSPSCSLLSQQAQWLKDWITQ 197
+ V G+ + L+ + + L+ +
Sbjct: 127 AEFDSFVLVTAYVPNAGRGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEID 186
Query: 198 KKESLVPFVIAGDFNRKINYLGNNDDFWKTIDPNDSLIRFPKEKDSRCNANKNLRNKIP- 256
+ AG ++ G D L + N R+K
Sbjct: 187 LRNPKGNKKNAGFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTFWTYMMNARSKNVG 246
Query: 257 --IDYFVMDQNAYKFLIQESFSEILYNEDDIKSRGKRLSDHCPISIDYDF 304
+DYF++ + L S+I SDHCPI++
Sbjct: 247 WRLDYFLLSHS---LLPALCDSKIR--------SKALGSDHCPITLYLAL 285
>1hd7_A DNA-(apurinic or apyrimidinic site) lyase; DNA repair,
endonuclease, APE1, HAP1, REF-1; 1.95A {Homo sapiens}
(A:)
Length = 318
Score = 41.7 bits (96), Expect = 1e-04
Identities = 35/294 (11%), Positives = 74/294 (25%), Gaps = 44/294 (14%)
Query: 21 AQKVRLVSWNINTLSEQEGVSLWKNSVKRTTSDYTLLRQYAKNLDADIVFLQEMGSYNAV 80
+++ SWN++ L + K DI+ LQE
Sbjct: 59 PATLKICSWNVD--------GLR-------AWIKKKGLDWVKEEAPDILCLQETKCSENK 103
Query: 81 AKVFPKNTWCIFYSTERLINHSKRDSNNDIHTAIAVRKKNVRVLQQSYPLLGAKDSFSRA 140
+ + + + + S + R+ ++V ++
Sbjct: 104 LPAELQELPGLSHQYWSAPSDKEGYSGV----GLLSRQCPLKVSYGIGDEEHDQEGRVIV 159
Query: 141 GNRRAVELLVEINGKKIWVLDIHLKSFCFLDSLENTYSPSCSLLSQQAQWLKDWITQKKE 200
+ L+ L + ++ S + ++ +
Sbjct: 160 AEFDSFVLVTAYVPNAGRGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEID 219
Query: 201 SLVPFVIAGD----------FNRKINYLGNNDDFWKTIDPNDSLIRFPKEKDSRCNANKN 250
P + F + + D F F + + N
Sbjct: 220 LRNPKGNKKNAGFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTFWTYMMNARSKNVG 279
Query: 251 LRNKIPIDYFVMDQNAYKFLIQESFSEILYNEDDIKSRGKRLSDHCPISIDYDF 304
R +DYF++ + L S+I SDHCPI++
Sbjct: 280 WR----LDYFLLSHS---LLPALCDSKIR--------SKALGSDHCPITLYLAL 318
>1ako_A Exonuclease III; AP-endonuclease, DNA repair; 1.70A
{Escherichia coli} (A:)
Length = 268
Score = 37.9 bits (86), Expect = 0.002
Identities = 40/299 (13%), Positives = 77/299 (25%), Gaps = 55/299 (18%)
Query: 25 RLVSWNINTLSEQEGVSLWKNSVKRTTSDYTLLRQYAKNLDADIVFLQE----------- 73
+ VS+NIN + + L + D++ LQE
Sbjct: 2 KFVSFNING---------LRARPHQ-------LEAIVEKHQPDVIGLQETKVHDDMFPLE 45
Query: 74 ----------MGSYNAVAKVFPKNTWCIFYSTERLINHSKRDSNNDIHTAIAVRKKNVRV 123
V + I I NV V
Sbjct: 46 EVAKLGYNVFYHGQKGHYGVALLTKETPIAVRRGFPGDDEEAQRRIIMAEIPSLLGNVTV 105
Query: 124 LQQSYPLLGAKDSFSRAGNRRAVELLVEINGKKIWVLDIHLKSFCFLDSLENTYSPSCSL 183
+ +P ++D + + ++ + D + + SP+
Sbjct: 106 INGYFPQGESRDHPIKFPAKAQFYQNLQNYLETELKRDNPVLIM-----GDMNISPTDLD 160
Query: 184 LSQQAQWLKDWITQKKESLVPFVIAGDFNRKINYLGNNDDFWKTIDPNDSLIRFPKEKDS 243
+ + K W+ K S ++ ++ G D F + +
Sbjct: 161 IGIGEENRKRWLRTGKCS--FLPEEREWMDRLMSWGLVDTFRHANPQTADRFSWFDYRSK 218
Query: 244 RCNANKNLRNKIPIDYFVMDQNAYKFLIQESFSEILYNEDDIKSRGKRLSDHCPISIDY 302
+ N+ LR ID + Q + I Y ++ SDH P+ +
Sbjct: 219 GFDDNRGLR----IDLLLASQP---LAECCVETGIDYEIRS----MEKPSDHAPVWATF 266
>2jc5_A Exodeoxyribonuclease; hydrolase, repair phosphodiesterase,
DNA repair, exonuclease, endonuclease; HET: BCN DIO GOL;
1.50A {Neisseria meningitidis} (A:)
Length = 259
Score = 37.1 bits (84), Expect = 0.003
Identities = 35/299 (11%), Positives = 81/299 (27%), Gaps = 64/299 (21%)
Query: 25 RLVSWNINTLSEQEGVSLWKNSVKRTTSDYTLLRQYAKNLDADIVFLQE----------- 73
+++S N+N + K +Y ADIV +QE
Sbjct: 3 KIISANVN--------GIRSAYKKG-------FYEYIAASGADIVCVQELKAQEADLSAD 47
Query: 74 -----MGSYNAVAKVFPKNTWCIFYSTERLINHSK---RDSNNDIHTAIAVRKKNVRVLQ 125
+ + YS + N + + + + V+
Sbjct: 48 MKNPHGMHGHWHCAEKRGYSGVAVYSKRKPDNVQIGMGIEEFDREGRFVRCDFGRLSVIS 107
Query: 126 QSYPLLGAKDSFSRAGNRRAVELLVEINGKKIWVLDIHLKSFCFLDSLENTYSPSCSLLS 185
P + R ++ + + + + + + L
Sbjct: 108 LYLP-------SGSSAEERQQVKYRFLDAFYPMLEAMKNEGRDIVVCGDWNIAHQNIDLK 160
Query: 186 QQAQWLKDWITQKKESLVPFVIAGDFNRKINYLGNNDDFWKTIDPNDSLIRFPKEKDSRC 245
K+ +E + I+ LG D + + P+ + +
Sbjct: 161 NWKGNQKNSGFLPEER-------EWIGKVIHKLGWTDMWRT-LYPDVPGYTWWSNRGQAY 212
Query: 246 NANKNLRNKIPIDYFVMDQNAYKFLIQESFSEILYNEDDIKSRGKRLSDHCPISIDYDF 304
+ R IDY ++ + + + + ++ SDH P+ ++YD+
Sbjct: 213 AKDVGWR----IDYQMVTPE---LAAKAVSAHVY--------KDEKFSDHAPLVVEYDY 256
>2ei9_A Non-LTR retrotransposon R1BMKS ORF2 protein; four layered
alpha beta sandwich, gene regulation; 2.00A {Bombyx
mori} (A:)
Length = 240
Score = 36.1 bits (82), Expect = 0.006
Identities = 15/108 (13%), Positives = 34/108 (31%), Gaps = 17/108 (15%)
Query: 23 KVRLVSWNINTLSEQEGVSLWKNSVKRTTSDYTLLRQYAKNLDADIVFLQEMGSYNAVAK 82
++R+ N+ R L A++L DIV +QE S
Sbjct: 7 RLRIGQINLGGA----------EDATRE------LPSIARDLGLDIVLVQEQYSMVGFLA 50
Query: 83 VFPKNTWCIFYSTERLINHSKRDSNNDIHTA-IAVRKKNVRVLQQSYP 129
+ Y R++ + + H + + ++ ++ +
Sbjct: 51 QCGAHPKAGVYIRNRVLPCAVLHHLSSTHITVVHIGGWDLYMVSAYFQ 98
>2jc4_A Exodeoxyribonuclease III; hydrolase, repair
phosphodiesterase, DNA repair, exonuclease,
endonuclease; HET: 1PE; 1.90A {Neisseria meningitidis}
(A:)
Length = 256
Score = 35.6 bits (80), Expect = 0.009
Identities = 35/297 (11%), Positives = 80/297 (26%), Gaps = 59/297 (19%)
Query: 25 RLVSWNINTLSEQEGVSLWKNSVKRTTSDYTLLRQYAKNLDADIVFLQEM---------- 74
++ +WN+N+ + + ++ + DI+ LQE+
Sbjct: 2 KITTWNVNS---------LNVRLPQ-------VQNLLADNPPDILVLQELKLDQDKFPAA 45
Query: 75 --GSYNAVAKVFPKNTW-----CIFYSTERLINHSKRDSNNDIHTAIAVRKKNVRVLQQS 127
+ T+ + + ++ IA VRV+
Sbjct: 46 ALQMMGWHCVWSGQKTYNGVAIVSRSVPQDVHFGLPALPDDPQRRVIAATVSGVRVINVY 105
Query: 128 YPLLGAKDSFSRAGNRRAVELLVEINGKKIWVLDIHLKSFCFLDSLENTYSPSCSLLSQQ 187
A DS + L E ++ + F +P+ +
Sbjct: 106 CVNGEALDSPKFKYKEQWFAALTEFVRDEMTRHGKLVLLGDF------NIAPADADCYDP 159
Query: 188 AQWLKDWITQKKESLVPFVIAGDFNRKINYLGNNDDFWKTIDPNDSLIRFPKEKDSRCNA 247
+W + E + D + + P + + + +
Sbjct: 160 EKWHEKIHCSSVE---------RQWFQNLLDLGLTDSLRQVHPEGAFYTWFDYRGAMFQR 210
Query: 248 NKNLRNKIPIDYFVMDQNAYKFLIQESFSEILYNEDDIKSRGKRLSDHCPISIDYDF 304
LR ID+ ++ + +R SDH P++ ++D+
Sbjct: 211 KLGLR----IDHILVSPA---MAAALKDVRVDLETRA----LERPSDHAPVTAEFDW 256
>1wdu_A TRAS1 ORF2P; four-layered alpha/beta sandwich, RNA binding
protein; 2.40A {Bombyx mori} (A:)
Length = 245
Score = 35.1 bits (79), Expect = 0.011
Identities = 30/283 (10%), Positives = 60/283 (21%), Gaps = 57/283 (20%)
Query: 22 QKVRLVSWNINTLSEQEGVSLWKNSVKRTTSDYTLLRQYAKNLDADIVFLQEMGSYNAVA 81
R++ N+ L A A I +QE
Sbjct: 18 PPYRVLQANLQRKK----------------LATAELAIEAATRKAAIALIQEP---YVGG 58
Query: 82 KVFPKNTWCIFYSTERLINHSKRDSNNDIHTAIAVRKKNVRVLQQSYPLLGAKDSFSRAG 141
K + S + + AIAV ++ V+Q
Sbjct: 59 AKSMKGFR------GVRVFQSTAQGDGTVKAAIAVFDHDLDVIQY--------------- 97
Query: 142 NRRAVELLVEINGKKIWVLDIHLKSFCFLDSLENTYSPSCSLLSQQAQWLKDWITQKKES 201
+ N + + + P S L Q + + ++
Sbjct: 98 ------PQLTTNNIVVVGIRTRAWEITLVSYYFEPDKPIESYLEQIKRVERKMGPKRLIF 151
Query: 202 LVPFVIAGDFNRKINYLGNNDDFWKTIDPNDSLIRFPKEKDSRCNANKNLRNKIPIDYFV 261
+ D T+ I + + R + +D
Sbjct: 152 GGDANAKSTWWGSKEDDARGDQLMGTLGELGLHILNEGDVPTFDTIRGGKRYQSRVDVTF 211
Query: 262 MDQNAYKFLIQESFSEILYNEDDIKSRGKRLSDHCPISIDYDF 304
++ L + + SDH + +
Sbjct: 212 CTED---MLDLIDGWRVDEDL--------VSSDHNGMVFNIRL 243
>2j63_A AP-endonuclease; base excision repair, lyase; 2.48A
{Leishmania major} (A:135-232,A:440-467)
Length = 126
Score = 34.6 bits (79), Expect = 0.018
Identities = 11/53 (20%), Positives = 22/53 (41%), Gaps = 12/53 (22%)
Query: 21 AQKVRLVSWNINTLSEQEGVSLWKNSVKRTTSDYTLLRQYAKNLDADIVFLQE 73
++ + ++WN+ L L K + LR + + D++ LQE
Sbjct: 13 SRMYKFITWNVAGLR-----GLLKKNASA-------LRAFMEAEKPDVLCLQE 53
>1vyb_A ORF2 contains A reverse transcriptase domain; endonuclease,
APE-1 type, retrotransposition, retrotransposon,
transferase; 1.8A {Homo sapiens} (A:)
Length = 238
Score = 34.1 bits (76), Expect = 0.026
Identities = 32/282 (11%), Positives = 69/282 (24%), Gaps = 49/282 (17%)
Query: 21 AQKVRLVSWNINTLSEQEGVSLWKNSVKRTTSDYTLLRQYAKNLDADIVFLQEMGSYNAV 80
+ +++ NIN L + L + K+ D + +QE
Sbjct: 5 NSHITILTLNINGL--------------NSAIKRHRLASWIKSQDPSVCCIQETHLTC-- 48
Query: 81 AKVFPKNTWCIFYSTERLINHSKRDSNNDIHTAIAVRKKNVRVLQQSYPLLGAKDSFSRA 140
+ AI V K +
Sbjct: 49 ------RDTHRLKIKGWRKIYQANGKQKKAGVAILVSDKTDFKPTKIKRD---------- 92
Query: 141 GNRRAVELLVEINGKKIWVLDIHLKSFCFLDSLENTYSPSCSLLSQQAQWLKDWITQKKE 200
+ + I +++ +L+I+ + ++ S L + D+ T
Sbjct: 93 KEGHYIMVKGSIQQEELTILNIYAPNTGAPRFIKQVLSDLQRDLDSHTLIMGDFNTPLST 152
Query: 201 SLVPFVIAGDFNRKINYLGNNDDFWKTIDPNDSLIRFPKEKDSRCNANKNLRNKIPIDYF 260
+ + + + D D + + ID+
Sbjct: 153 LDRSTRQKVNKDTQ-----ELNSALHQADLIDIYRTLHPKSTEYTFFSAPHHTYSKIDHI 207
Query: 261 VMDQNAYKFLIQESFSEILYNEDDIKSRGKRLSDHCPISIDY 302
V + + +EI+ LSDH I ++
Sbjct: 208 VGSKALLSKCKR---TEIIT---------NYLSDHSAIKLEL 237
>2imq_X Salivary nitrophorin; ferrous heme, beta-sandwich, transport
protein; HET: HEM; 1.30A {Cimex lectularius} (X:)
Length = 282
Score = 33.9 bits (76), Expect = 0.030
Identities = 29/299 (9%), Positives = 67/299 (22%), Gaps = 43/299 (14%)
Query: 23 KVRLVSWNINTLSEQEGVSLWKNSVKRTTSDYTLLRQYAKNLDADIVFLQEMGSYNAVAK 82
V VSWN + + D V +Q G
Sbjct: 8 SVHTVSWNSGHERAPTNLEELLGLNSG------------ETPDVIAVAVQGFGFQTD-KP 54
Query: 83 VFPKNTWCIFYSTERLINHSKRDSNNDIHTAIAVRKKNVRVLQQSYPLLGAKDSFSRAGN 142
F S ++K + + V + Q + +
Sbjct: 55 QQGPACVKNFQSLLTSKGYTKLKNTITETMGLTVYCLEKHLDQNTLKNETIIVTVDDQKK 114
Query: 143 RRAVELLVEINGKKIWVLDIHLKSFCFLDSLENTYSPSCSLLSQQAQWLKDWI--TQKKE 200
+ I K+ + S + + ++K +
Sbjct: 115 SGGIVTSFTIYNKRFSFTTSRM-------------SDEDVTSTNTKYAYDTRLDYSKKDD 161
Query: 201 SLVPFVIAGDFNRKINYLGNNDDFWKTIDPNDSLIRFPKEKDSRCNANKNLRNKIPID-- 258
GD N ++ + + D L+ F + K ++ + + +
Sbjct: 162 PSDFLFWIGDLNVRVETNATHAKSLVDQNNIDGLMAFDQLKKAKEQKLFDGWTEPQVTFK 221
Query: 259 -----------YFVMDQNAYKFLIQESFSEILYNED-DIKSRGK-RLSDHCPISIDYDF 304
Y + ++ + S + ++H P+ +
Sbjct: 222 PTYKFKPNTDEYDLSATPSWTDRALYKSGTGKTIQPLSYNSLTNYKQTEHRPVLAKFRV 280
>2voa_A AF_EXO, XTHA, exodeoxyribonuclease III; EXOIII, AP
endonuclease, lyase; 1.7A {Archaeoglobus fulgidus} (A:)
Length = 257
Score = 33.7 bits (75), Expect = 0.032
Identities = 29/284 (10%), Positives = 66/284 (23%), Gaps = 35/284 (12%)
Query: 25 RLVSWNINTLSEQEGVSLWKNSVKRTTSDYTLLRQYAKNLDADIVFLQEMGSYNAVAKVF 84
++ ++N+N+ ++ + + + K DI+ +QE
Sbjct: 3 KIATFNVNS---------IRSRLHI-------VIPWLKENKPDILCMQE------TKVEN 40
Query: 85 PKNTWCIFYSTERLINHSKRDSNNDIHTAIAVRKKNVRVLQQSYPLLGAKDSFSRAGNRR 144
K F+ + S N + A ++V S P + ++
Sbjct: 41 RKFPEADFHRIGYHVVFSGSKGRNGVAIASLEEPEDVSFGLDSEPKDEDRLIRAKIAGID 100
Query: 145 AVELLVEINGKKIWVLDIHLKSFCFLDSLENTYSPSCSLLSQQAQWLKDWITQKKESLVP 204
+ V G KI K + + + P
Sbjct: 101 VINTYV-PQGFKIDSEKYQYKLQWLERLYHYLQKTVDFRSFAVWCGDMNVAPEPIDVHSP 159
Query: 205 FVIAGDFNRKINYLGNNDDFWKTI--DPNDSLIRFPKEKDSRCNANKNLRNKIP---IDY 259
+ + + D + + K + D
Sbjct: 160 DKLKNHVXFHEDARRAYKKILELGFVDVLRKIHPNERIYTFYDYRVKGAIERGLGWRGDA 219
Query: 260 FVMDQNAYKFLIQESFSEILYNEDDIKSRGKRLSDHCPISIDYD 303
+ + ++ SDH P+ +D
Sbjct: 220 ILATPP---LAERCVDCYADIKPRL----AEKPSDHLPLVAVFD 256
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae} (B:1772-1800,B:1916-2006)
Length = 120
Score = 28.2 bits (63), Expect = 1.2
Identities = 7/32 (21%), Positives = 12/32 (37%), Gaps = 8/32 (25%)
Query: 79 AVAKVFPKNTWC--IFYSTER---LINHSKRD 105
++A V + +FY R + RD
Sbjct: 1 SLADVMSIESLVEVVFY---RGMTMQVAVPRD 29
Score = 26.7 bits (59), Expect = 3.8
Identities = 5/15 (33%), Positives = 8/15 (53%)
Query: 66 ADIVFLQEMGSYNAV 80
++VF + M AV
Sbjct: 12 VEVVFYRGMTMQVAV 26
>2gdt_A Leader protein; P65 homolog; NSP1 (EC 3.4.22.-);
beta-barrel, alpha-beta, replicase, structural genomics,
PSI-2, protein structure initiative; NMR {Sars
coronavirus} (A:)
Length = 116
Score = 27.3 bits (60), Expect = 2.9
Identities = 14/61 (22%), Positives = 28/61 (45%)
Query: 94 STERLINHSKRDSNNDIHTAIAVRKKNVRVLQQSYPLLGAKDSFSRAGNRRAVELLVEIN 153
S E ++ ++ N + + K + L+Q Y + D+ S + VEL+ E++
Sbjct: 23 SVEEALSEAREHLKNGTCGLVELEKGVLPQLEQPYVFIKRSDALSTNHGHKVVELVAEMD 82
Query: 154 G 154
G
Sbjct: 83 G 83
>2f1n_A CDT B, cytolethal distending toxin subunit B; E.coli, DNAse
I, microbatch; 1.73A {Escherichia coli} (A:)
Length = 262
Score = 27.1 bits (60), Expect = 3.2
Identities = 41/211 (19%), Positives = 75/211 (35%), Gaps = 59/211 (27%)
Query: 24 VRLVSWNINTLSEQEGVSLWKNSVKRTTSDYTLLRQYAKNLDADIVFLQEMGSYNAVA-- 81
R+ +WN+ S S W +V++ L+ DI+ +QE GS + A
Sbjct: 16 FRVATWNLQGASATTE-SKWNINVRQ------LISGEN---AVDILAVQEAGSPPSTAVD 65
Query: 82 --KVFP-------KNTWCIFYST---ERLINHSKRDSN-NDIHTAIAVRKK--NVRVLQQ 126
+V P + W + ++ + I S D+ ++ A+ ++ V VL
Sbjct: 66 TGRVIPSPGIPVRELIWNLSTNSRPQQVYIYFSAVDALGGRVNLALVSNRRADEVFVLSP 125
Query: 127 SY----PLLGAKDSFSRAGNRRAVELLVEINGKKIWVLDIHLKSFCFLDSLENTYSPSCS 182
PLLG R GN H ++ + + +
Sbjct: 126 VRQGGRPLLGI-----RIGN--------------DAFFTAH--------AIAMRNNDAPA 158
Query: 183 LLSQQAQWLKDWITQKKESLVPFVIAGDFNR 213
L+ + + +D + ++I GDFNR
Sbjct: 159 LVEEVYNFFRD-SRDPVHQALNWMILGDFNR 188
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.321 0.135 0.408
Gapped
Lambda K H
0.267 0.0355 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 2,246,109
Number of extensions: 97610
Number of successful extensions: 286
Number of sequences better than 10.0: 1
Number of HSP's gapped: 267
Number of HSP's successfully gapped: 29
Length of query: 304
Length of database: 4,956,049
Length adjustment: 88
Effective length of query: 216
Effective length of database: 1,981,209
Effective search space: 427941144
Effective search space used: 427941144
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.6 bits)