RPSBLAST alignment of GI: 254781003 and protein with PDBid: 1sr4

>1sr4_B CDT B, cytolethal distending toxin protein B; bacterial, virulence, DNA damage, genotoxin, cytotoxins, cell cycle, apoptosis, lectin; 2.00A {Haemophilus ducreyi} SCOP: d.151.1.1 PDB: 2f2f_B Length = 261

 Score = 56.7 bits (135), Expect = 6e-09
 Identities = 35/288 (12%), Positives = 85/288 (29%), Gaps = 34/288 (11%)

Query: 21  AQKVRLVSWNINTLSEQEGVSLWKNSVKRTTSDYTLLRQYAKNLDADIVFLQEMGSYNAV 80
               ++ +WN+             ++V  +  +  + +  +    ADI+ +QE GS  + 
Sbjct: 2   LSDFKVATWNLQ----------GSSAVNESKWNINVRQLLSGEQGADILMVQEAGSLPSS 51

Query: 81  AKVFPKNTWCIFYSTERLINHSKRDSNNDIHTAIAVRKKNVRVLQQSYPLL---GAKDSF 137
           A    +         E    +     +      I   + +V   + +  ++    A ++F
Sbjct: 52  AVRTSRVIQHGGTPIEEYTWN-LGTRSRPNMVYIYYSRLDVGANRVNLAIVSRRQADEAF 110

Query: 138 SRAGNRRAVEL--LVEINGKKIWVLDIHLKSFCFLDSLENTYSPSCSLLSQQAQWLKDWI 195
               +   ++    V I         +H  +    D++                      
Sbjct: 111 IVHSDSSVLQSRPAVGIRIGTDVFFTVHALATGGSDAVSLIR--------NIFTTFNSSS 162

Query: 196 TQKKESLVPFVIAGDFNRKINYLGNNDDFWKTIDPNDSLIRFPKEKDSRCNANKNLRNKI 255
           +  +  +  +++ GDFNR        +                    +            
Sbjct: 163 SPPERRVYSWMVVGDFNR-----APANLEVALRQEPAVSENTIIIAPTEPTHRSGNI--- 214

Query: 256 PIDYFVMDQNAYKFLIQESFSEILYNEDDIKSRGKRLSDHCPISIDYD 303
            +DY ++         +++   I  +    + R +  SDH P+S   D
Sbjct: 215 -LDYAILHDAHLPR-REQARERIGASLMLNQLRSQITSDHFPVSFVRD 260