RPSBLAST alignment of GI: 254781003 and protein with PDBid: 1vyb

>1vyb_A ORF2 contains A reverse transcriptase domain; endonuclease, APE-1 type, retrotransposition, retrotransposon, transferase; 1.8A {Homo sapiens} SCOP: d.151.1.1 PDB: 2v0s_A 2v0r_A Length = 238
 Score = 37.4 bits (85), Expect = 0.004
 Identities = 31/283 (10%), Positives = 67/283 (23%), Gaps = 57/283 (20%)

Query: 23  KVRLVSWNINTLSEQEGVSLWKNSVKRTTSDYTLLRQYAKNLDADIVFLQEMGSYNAVAK 82
            + +++ NIN L               +      L  + K+ D  +  +QE         
Sbjct: 7   HITILTLNINGL--------------NSAIKRHRLASWIKSQDPSVCCIQETHLTCRDTH 52

Query: 83  VFPKNTWCIFYSTERLINHSKRDSNNDIHTAIAVRKKNVRVLQQSYPLLGAKDSFSRAGN 142
                 W   Y        +          AI V  K                   R   
Sbjct: 53  RLKIKGWRKIYQANGKQKKA--------GVAILVSDKTDFKP----------TKIKRDKE 94

Query: 143 RRAVELLVEINGKKIWVLDIHLKSFCFLDSLENTYSPSCSLLSQQAQWLKDWITQKKESL 202
              + +   I  +++ +L+I+  +                      +++K  ++  +  L
Sbjct: 95  GHYIMVKGSIQQEELTILNIYAPNTGAP------------------RFIKQVLSDLQRDL 136

Query: 203 VPFVIAGDFNRKINYLGNNDDFWKTIDPNDSLIRFPKEKDSRCNANKNLRNKIPIDYFVM 262
               +            +     K       L     + D                +F  
Sbjct: 137 DSHTLIMGDFNTPLSTLDRSTRQKVNKDTQELNSALHQADLIDIYRTLHPKSTEYTFFSA 196

Query: 263 DQNAYK----FLIQESFSEILYNEDDIKSRGKRLSDHCPISID 301
             + Y      +  ++           +     LSDH  I ++
Sbjct: 197 PHHTYSKIDHIVGSKALLSKC---KRTEIITNYLSDHSAIKLE 236