RPSBLAST alignment of GI: 254781003 and protein with PDBid: 1vyb
>1vyb_A ORF2 contains A reverse transcriptase domain; endonuclease, APE-1 type, retrotransposition, retrotransposon, transferase; 1.8A {Homo sapiens} SCOP: d.151.1.1 PDB: 2v0s_A 2v0r_A Length = 238
Score = 37.4 bits (85), Expect = 0.004
Identities = 31/283 (10%), Positives = 67/283 (23%), Gaps = 57/283 (20%)
Query: 23 KVRLVSWNINTLSEQEGVSLWKNSVKRTTSDYTLLRQYAKNLDADIVFLQEMGSYNAVAK 82
+ +++ NIN L + L + K+ D + +QE
Sbjct: 7 HITILTLNINGL--------------NSAIKRHRLASWIKSQDPSVCCIQETHLTCRDTH 52
Query: 83 VFPKNTWCIFYSTERLINHSKRDSNNDIHTAIAVRKKNVRVLQQSYPLLGAKDSFSRAGN 142
W Y + AI V K R
Sbjct: 53 RLKIKGWRKIYQANGKQKKA--------GVAILVSDKTDFKP----------TKIKRDKE 94
Query: 143 RRAVELLVEINGKKIWVLDIHLKSFCFLDSLENTYSPSCSLLSQQAQWLKDWITQKKESL 202
+ + I +++ +L+I+ + +++K ++ + L
Sbjct: 95 GHYIMVKGSIQQEELTILNIYAPNTGAP------------------RFIKQVLSDLQRDL 136
Query: 203 VPFVIAGDFNRKINYLGNNDDFWKTIDPNDSLIRFPKEKDSRCNANKNLRNKIPIDYFVM 262
+ + K L + D +F
Sbjct: 137 DSHTLIMGDFNTPLSTLDRSTRQKVNKDTQELNSALHQADLIDIYRTLHPKSTEYTFFSA 196
Query: 263 DQNAYK----FLIQESFSEILYNEDDIKSRGKRLSDHCPISID 301
+ Y + ++ + LSDH I ++
Sbjct: 197 PHHTYSKIDHIVGSKALLSKC---KRTEIITNYLSDHSAIKLE 236