RPSBLAST alignment of GI: 254781003 and protein with PDBid: 2j63

>2j63_A AP-endonuclease; base excision repair, lyase; 2.48A {Leishmania major} Length = 467
 Score = 42.9 bits (100), Expect = 1e-04
 Identities = 45/350 (12%), Positives = 90/350 (25%), Gaps = 96/350 (27%)

Query: 21  AQKVRLVSWNINTLSEQEGVSLWKNSVKRTTSDYTLLRQYAKNLDADIVFLQEMGSYNAV 80
           ++  + ++WN+  L         +  +K+  S    LR + +    D++ LQE       
Sbjct: 147 SRMYKFITWNVAGL---------RGLLKKNASA---LRAFMEAEKPDVLCLQE---TKLN 191

Query: 81  AKVFPKNTWCIFYSTERLINHSKRDSNNDIHTAIAVRKKNVRV-----LQQSYPLLGAKD 135
                 N           ++H          T   ++             + + L     
Sbjct: 192 VDEADANATLGVVDGYSFVDHPCAFKRGYSGTRTYMKNSTTVKGLHARCTRGFALPSEPQ 251

Query: 136 SFSRAGNR-----------RAVELLVEING------KKIWVLDIHLKSFC-FLDSLENTY 177
           + + AG+R           R +   +  +        +I +++ ++ +    L  L    
Sbjct: 252 ADAAAGSRVLVEGAGDEEGRVLTTFLSPDPDSASSSSRIALVNTYVANSGMGLTRLPYRV 311

Query: 178 SPSCSLLSQQAQWLKDWITQKKESLV-----------PFVIAGDFNRKINYLGNNDDFWK 226
                 + +    L  W T+                  F+ AGD N              
Sbjct: 312 QSFDPSMREYLHRLDTWATENAAVPSAAAMGSGSSPHGFIWAGDLNVAERDYDRYYAGTF 371

Query: 227 TIDPNDSLIR-----------------------FPKEK------DSRCNA---NKNLRNK 254
                 S                          +P+          R N    N   R  
Sbjct: 372 KSMQECSGFAPEERMSFRETMQRTNSVDIFRQLYPQAGPVYSFWSQRINGRPRNLGWR-- 429

Query: 255 IPIDYFVMDQNAYKFLIQESFSEILYNEDDIKSRGKRLSDHCPISIDYDF 304
             +DYFV+      +++       +             SDHCP  +    
Sbjct: 430 --LDYFVVSSRLASYVVD---CFPMPTV--------MGSDHCPFQMWMRH 466