RPSBLAST alignment of GI: 254781003 and protein with PDBid: 2j63
>2j63_A AP-endonuclease; base excision repair, lyase; 2.48A {Leishmania major} Length = 467
Score = 42.9 bits (100), Expect = 1e-04
Identities = 45/350 (12%), Positives = 90/350 (25%), Gaps = 96/350 (27%)
Query: 21 AQKVRLVSWNINTLSEQEGVSLWKNSVKRTTSDYTLLRQYAKNLDADIVFLQEMGSYNAV 80
++ + ++WN+ L + +K+ S LR + + D++ LQE
Sbjct: 147 SRMYKFITWNVAGL---------RGLLKKNASA---LRAFMEAEKPDVLCLQE---TKLN 191
Query: 81 AKVFPKNTWCIFYSTERLINHSKRDSNNDIHTAIAVRKKNVRV-----LQQSYPLLGAKD 135
N ++H T ++ + + L
Sbjct: 192 VDEADANATLGVVDGYSFVDHPCAFKRGYSGTRTYMKNSTTVKGLHARCTRGFALPSEPQ 251
Query: 136 SFSRAGNR-----------RAVELLVEING------KKIWVLDIHLKSFC-FLDSLENTY 177
+ + AG+R R + + + +I +++ ++ + L L
Sbjct: 252 ADAAAGSRVLVEGAGDEEGRVLTTFLSPDPDSASSSSRIALVNTYVANSGMGLTRLPYRV 311
Query: 178 SPSCSLLSQQAQWLKDWITQKKESLV-----------PFVIAGDFNRKINYLGNNDDFWK 226
+ + L W T+ F+ AGD N
Sbjct: 312 QSFDPSMREYLHRLDTWATENAAVPSAAAMGSGSSPHGFIWAGDLNVAERDYDRYYAGTF 371
Query: 227 TIDPNDSLIR-----------------------FPKEK------DSRCNA---NKNLRNK 254
S +P+ R N N R
Sbjct: 372 KSMQECSGFAPEERMSFRETMQRTNSVDIFRQLYPQAGPVYSFWSQRINGRPRNLGWR-- 429
Query: 255 IPIDYFVMDQNAYKFLIQESFSEILYNEDDIKSRGKRLSDHCPISIDYDF 304
+DYFV+ +++ + SDHCP +
Sbjct: 430 --LDYFVVSSRLASYVVD---CFPMPTV--------MGSDHCPFQMWMRH 466