RPS-BLAST 2.2.22 [Sep-27-2009]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= gi|254781003|ref|YP_003065416.1| hypothetical protein
CLIBASIA_04520 [Candidatus Liberibacter asiaticus str. psy62]
(304 letters)
>d2f1na1 d.151.1.1 (A:1-250) Cytolethal distending toxin subunit B
{Escherichia coli [TaxId: 562]}
Length = 250
Score = 59.3 bits (142), Expect = 4e-10
Identities = 42/280 (15%), Positives = 82/280 (29%), Gaps = 37/280 (13%)
Query: 23 KVRLVSWNINTLSEQEGVSLWKNSVKRTTSDYTLLRQYAKNLDADIVFLQEMGSYNAVAK 82
R+ +WN+ ++ + + + + + DI+ +QE GS + A
Sbjct: 4 DFRVATWNLQ----------GASATTESKWNINVRQLISGENAVDILAVQEAGSPPSTAV 53
Query: 83 VFPKNTWCIFYSTERLINHSKRDSNNDIHTAI--AVRKKNVRVLQQSYPLLGAKDSFSRA 140
+ LI + +S AV RV A + F +
Sbjct: 54 DTGRVIPSPGIPVRELIWNLSTNSRPQQVYIYFSAVDALGGRVNLALVSNRRADEVFVLS 113
Query: 141 GNRRAVELLVEINGKKIWVLDIHLKSFCFLDSLENTYSPSCSLLSQQAQWLKDWITQKKE 200
R+ L+ I H + D+ L ++
Sbjct: 114 PVRQGGRPLLGIRIGNDAFFTAHAIAMRNNDAPA---------LVEEVYNFFRDSRDPVH 164
Query: 201 SLVPFVIAGDFNRKINYLGNNDDFWKTIDPNDSLIRFPKEKDSRCNANKNLRNKIPIDYF 260
+ ++I GDFNR+ L N + ++ ++ +DY
Sbjct: 165 QALNWMILGDFNREPADLEMNLTVPVR----RASEIISPAAATQ-------TSQRTLDYA 213
Query: 261 VMDQNAYKFLIQESFSEILYNEDDIKSRGKRLSDHCPISI 300
V + + S + R + SDH P+ +
Sbjct: 214 VAGNS-----VAFRPSPLQAGIVYGARRTQISSDHFPVGV 248
>d2ddra1 d.151.1.3 (A:7-305) Sphingomyelin phosphodiesterase C
{Bacillus cereus [TaxId: 1396]}
Length = 299
Score = 58.5 bits (139), Expect = 6e-10
Identities = 39/309 (12%), Positives = 90/309 (29%), Gaps = 39/309 (12%)
Query: 23 KVRLVSWNINTLSEQEGVSLWKNSVKRTTSDYTLLRQYAKNLDADIVFLQEMGSYNAVAK 82
+++++ N+ LS + + L+ + D+V L E+ +A +
Sbjct: 3 TLKVMTHNVYMLSTNLYPNWGQTERAD------LIGAADYIKNQDVVILNEVFDNSASDR 56
Query: 83 VFPKNTWCIFYSTERLINHSKRDSN-----------NDIHTAIAVRKKNVRVLQQSYPLL 131
+ T L S + + D AI + +Q +
Sbjct: 57 LLGNLKKEYPNQTAVLGRSSGSEWDKTLGNYSSSTPEDGGVAIVSKWPIAEKIQYVFAKG 116
Query: 132 GAKDSFSRAGNRRAVELLVEINGKKIWVLDIHLKSFCFLDSLENTYSPSCSLLSQQAQWL 191
D+ S + V ++ N + + V+ HL++ + + +Q +
Sbjct: 117 CGPDNLSN---KGFVYTKIKKNDRFVHVIGTHLQAEDSMCGKTSPA---SVRTNQLKEIQ 170
Query: 192 KDWITQKKESLVPFVIAGDFN--------RKINYLGNNDDFWKTIDPNDSLIRFPKEKDS 243
+ + +I GD N + + P+ + + +
Sbjct: 171 DFIKNKNIPNNEYVLIGGDMNVNKINAENNNDSEYASMFKTLNASVPSYTGHTATWDATT 230
Query: 244 RCNANKNLRNKIP--IDYFVMDQNAYK------FLIQESFSEILYNEDDIKSRGKRLSDH 295
A N + +DY + ++ ++Q + K SDH
Sbjct: 231 NSIAKYNFPDSPAEYLDYIIASKDHANPSYIENKVLQPKSPQWTVTSWFQKYTYNDYSDH 290
Query: 296 CPISIDYDF 304
P+
Sbjct: 291 YPVEATISM 299
>d1zwxa1 d.151.1.3 (A:41-333) Sphingomyelin phosphodiesterase C
{Listeria ivanovii [TaxId: 1638]}
Length = 293
Score = 56.5 bits (134), Expect = 3e-09
Identities = 37/302 (12%), Positives = 85/302 (28%), Gaps = 29/302 (9%)
Query: 21 AQKVRLVSWNINTLSEQEGVSLWKNSVKRTTSDYTLLRQYAKNLDADIVFLQEMGSYNAV 80
++ S N+ S + + R L+ Q + D+V L E +A
Sbjct: 2 PGNFKITSHNVYLFSRN--IYPNWGQMHR----ADLIAQADYMKNNDVVILNEAFDTSAS 55
Query: 81 AKVFPKNTWCIFYSTERLINH--------SKRDSNNDIHTAIAVRKKNVRVLQQSYPLLG 132
++ + T + + +AV + V + +
Sbjct: 56 HRLLNNLREMYPHQTPVIGRSKHGWDKTEGNYSNFALEDGGVAVVSQWPIVEKSQHIFQR 115
Query: 133 AKDSFSRAGNRRAVELLVEINGKKIWVLDIHLKSFCFLDSLENTYSPSCSLLSQQAQWLK 192
+ R N+ + + NGK ++ H ++ L S + + Q +
Sbjct: 116 GGGAD-RLSNKGFAYVKIMKNGKPYHIIGTHTQADDSLISKDTSR---AIRAEQMQEIQT 171
Query: 193 DWITQKKESLVPFVIAGDFN-----RKINYLGNNDDFWKTIDPNDSLIRFPKEKDSRCNA 247
+ I GD N + + + + + N + + +S
Sbjct: 172 FIAKKNIPKDEIIFIGGDLNVNYGTDEYHDMLKLLNVSSPANFNGQMATWDPTTNSMLKE 231
Query: 248 NKNLRNKIPIDYFVMDQNAYK------FLIQESFSEILYNEDDIKSRGKRLSDHCPISID 301
+ +DY ++ + ++ + + SDH P+
Sbjct: 232 SYPKAAPEYLDYIFVENGHARPHSWHNKVLHTKSPQWSVKSWFKTYTYQDFSDHYPVVGF 291
Query: 302 YD 303
D
Sbjct: 292 TD 293
>d1hd7a_ d.151.1.1 (A:) DNA repair endonuclease Hap1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 275
Score = 51.6 bits (122), Expect = 7e-08
Identities = 35/288 (12%), Positives = 76/288 (26%), Gaps = 42/288 (14%)
Query: 25 RLVSWNINTLSEQEGVSLWKNSVKRTTSDYTLLRQYAKNLDADIVFLQEMGSYNAVAKVF 84
++ SWN++ L + +K+ + K DI+ LQE
Sbjct: 20 KICSWNVDGL---------RAWIKK------KGLDWVKEEAPDILCLQET---KCSENKL 61
Query: 85 PKNTWCIFYSTERLINHSKRDSNNDIHTAIAVRKKNVRVLQQSYPLLGAKDSFSRAGNRR 144
P + + + + ++ + + A
Sbjct: 62 PAELQELPGLSHQYWSAPSDKEGYSGVGLLSRQCPLKVSYGIGDEEHDQEGRVIVAEFDS 121
Query: 145 AVELLVEINGKKIWVLDIHLKSFCFLDSL---------ENTYSPSCSLLSQQAQWLKDWI 195
V + + ++ + + + ++ + L++
Sbjct: 122 FVLVTAYVPNAGRGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPK 181
Query: 196 TQKKESLVPFVIAGDFNRKINYLGNNDDFWKTIDPNDSLIRFPKEKDSRCNANKNLRNKI 255
KK + F + + D F F + + N R
Sbjct: 182 GNKKNAGFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTFWTYMMNARSKNVGWR--- 238
Query: 256 PIDYFVMDQNAYKFLIQESFSEILYNEDDIKSRGKRLSDHCPISIDYD 303
+DYF++ + L S+I SDHCPI++
Sbjct: 239 -LDYFLLSHSLLPALCD---SKIRSKA--------LGSDHCPITLYLA 274
>d2a40b1 d.151.1.1 (B:1-260) Deoxyribonuclease I {Cow (Bos taurus)
[TaxId: 9913]}
Length = 260
Score = 50.0 bits (117), Expect = 2e-07
Identities = 41/283 (14%), Positives = 83/283 (29%), Gaps = 32/283 (11%)
Query: 25 RLVSWNINTLSEQEGVSLWKNSVKRTTSDYTLLRQYAKNL-DADIVFLQEM--GSYNAVA 81
++ ++NI T + S+ TL + + DIV +QE+ AV
Sbjct: 2 KIAAFNIRTFG------------ETKMSNATLASYIVRIVRRYDIVLIQEVRDSHLVAVG 49
Query: 82 KVFPKNTWCIFYSTERLINHSKRDSNNDIHTAIAVRKKNVRVLQQSYPLLGAKDSFSRAG 141
K+ + +++ ++ R V VL G + + +
Sbjct: 50 KLLDYLNQDDPNTYHYVVSEPLGRNSYKERYLFLFRPNKVSVLDTYQYDDGCESCGNDSF 109
Query: 142 NRRAVELLVEINGKKIWVLDIHLKSFCFLDSLENTYSPSCSLLSQQAQWLKDWITQKKES 201
+R + + K+ I + + Q+K
Sbjct: 110 SREPAVVKFSSHSTKVKEFAIVALHSAP---------SDAVAEINSLYDVYLDV-QQKWH 159
Query: 202 LVPFVIAGDFNRKINYLGNNDDFWKTIDPNDSLIRFPKEKDSRCNANKNLRNKIPIDYFV 261
L ++ GDFN +Y+ W +I S DS + D V
Sbjct: 160 LNDVMLMGDFNADCSYV--TSSQWSSIRLRTSSTFQWLIPDSADTTATSTNC--AYDRIV 215
Query: 262 MDQNAYKFLIQESFSEILYNEDDIKS---RGKRLSDHCPISID 301
+ + + + + + +SDH P+ +
Sbjct: 216 VAGSLLQSSVVPGSAAPFDFQAAYGLSNEMALAISDHYPVEVT 258
>d1sr4b_ d.151.1.1 (B:) Cytolethal distending toxin subunit B
{Haemophilus ducreyi [TaxId: 730]}
Length = 261
Score = 49.5 bits (116), Expect = 3e-07
Identities = 35/288 (12%), Positives = 86/288 (29%), Gaps = 36/288 (12%)
Query: 22 QKVRLVSWNINTLSEQEGVSLWKNSVKRTTSDYTLLRQYAKNLDADIVFLQEMGSYNA-- 79
++ +WN+ ++V + + + + + ADI+ +QE GS +
Sbjct: 3 SDFKVATWNLQ----------GSSAVNESKWNINVRQLLSGEQGADILMVQEAGSLPSSA 52
Query: 80 --VAKVFPKNTWCIFYSTERLINHSKRDSNNDIHTAIAVRKK--NVRVLQQSYPLLGAKD 135
++V I T L S+ + ++ + V N+ ++ +
Sbjct: 53 VRTSRVIQHGGTPIEEYTWNLGTRSRPNMVYIYYSRLDVGANRVNLAIVSRRQADEAFIV 112
Query: 136 SFSRAGNRRAVELLVEINGKKIWVLDIHLKSFCFLDSLENTYSPSCSLLSQQAQWLKDWI 195
+ + + + I +H + D++
Sbjct: 113 HSDSSVLQSRPAVGIRIGT--DVFFTVHALATGGSDAVSLIR--------NIFTTFNSSS 162
Query: 196 TQKKESLVPFVIAGDFNRKINYLGNNDDFWKTIDPNDSLIRFPKEKDSRCNANKNLRNKI 255
+ + + +++ GDFNR + +
Sbjct: 163 SPPERRVYSWMVVGDFNR-----APANLEVALRQEPAVSENTIIIAPTEPTHRSGNI--- 214
Query: 256 PIDYFVMDQNAYKFLIQESFSEILYNEDDIKSRGKRLSDHCPISIDYD 303
+DY ++ +++ I + + R + SDH P+S D
Sbjct: 215 -LDYAILHDAHLPR-REQARERIGASLMLNQLRSQITSDHFPVSFVRD 260
>d1wdua_ d.151.1.1 (A:) Endonuclease domain of TRAS1 retrotransposon
(ORF2) {Silkworm (Bombyx mori) [TaxId: 7091]}
Length = 228
Score = 46.2 bits (108), Expect = 4e-06
Identities = 34/285 (11%), Positives = 67/285 (23%), Gaps = 69/285 (24%)
Query: 25 RLVSWNINTLSEQEGVSLWKNSVKRTTSDYTLLRQYAKNLDADIVFLQEMGSYNAVAKVF 84
R++ N+ R L A A I +QE Y AK
Sbjct: 4 RVLQANLQ----------------RKKLATAELAIEAATRKAAIALIQEP--YVGGAKSM 45
Query: 85 PKNTWCIFYSTERLINHSKRDSNNDIHTAIAVRKKNVRVLQQSYPLLGAKDSFSRAGNRR 144
+ S + + AIAV ++ V+Q
Sbjct: 46 KGFRGVRVF-------QSTAQGDGTVKAAIAVFDHDLDVIQYPQL-----------TTNN 87
Query: 145 AVELLVEINGKKIWVLDIHLKSFCFLDSLENTYSPSCSLLSQQAQWLKDWITQKKESLVP 204
V + + +I ++ + + ++S + +
Sbjct: 88 IVVVGIRTRAWEITLVSYYFEPDKPIESYLEQIKRVERKMGPK----------------R 131
Query: 205 FVIAGDFNRK------INYLGNNDDFWKTIDPNDSLIRFPKEKDSRCNANKNLRNKIPID 258
+ GD N K D T+ I + + R + +D
Sbjct: 132 LIFGGDANAKSTWWGSKEDDARGDQLMGTLGELGLHILNEGDVPTFDTIRGGKRYQSRVD 191
Query: 259 YFVMDQNAYKFLIQESFSEILYNEDDIKSRGKRLSDHCPISIDYD 303
++ + + SDH + +
Sbjct: 192 VTFCTEDMLDLIDG---WRVD--------EDLVSSDHNGMVFNIR 225
>d1akoa_ d.151.1.1 (A:) DNA-repair enzyme exonuclease III
{Escherichia coli [TaxId: 562]}
Length = 268
Score = 41.7 bits (96), Expect = 8e-05
Identities = 38/297 (12%), Positives = 77/297 (25%), Gaps = 51/297 (17%)
Query: 25 RLVSWNINTLSEQEGVSLWKNSVKRTTSDYTLLRQYAKNLDADIVFLQEMGSYNAVAKVF 84
+ VS+NIN G+ + ++ + D++ LQE +F
Sbjct: 2 KFVSFNIN------GLRARPHQLE----------AIVEKHQPDVIGLQE---TKVHDDMF 42
Query: 85 PKN-TWCIFYSTERLINHSKRDSNNDIHTAIAVRKKNVRVLQQSYPLLGAKDSFSRAGNR 143
P + Y+ ++ +
Sbjct: 43 PLEEVAKLGYNVFYHGQKGHYGVALLTKETPIAVRRGFPGDDEEAQRRIIMAEIPSLLGN 102
Query: 144 RAVELLVEINGKKIWVLDIHLKSFCFLDSLENTYSPSCSL------------------LS 185
V G+ F +L+N +
Sbjct: 103 VTVINGYFPQGESRDHPIKFPAKAQFYQNLQNYLETELKRDNPVLIMGDMNISPTDLDIG 162
Query: 186 QQAQWLKDWITQKKESLVPFVIAGDFNRKINYLGNNDDFWKTIDPNDSLIRFPKEKDSRC 245
+ K W+ K S +P ++ ++ G D F + +
Sbjct: 163 IGEENRKRWLRTGKCSFLPEER--EWMDRLMSWGLVDTFRHANPQTADRFSWFDYRSKGF 220
Query: 246 NANKNLRNKIPIDYFVMDQNAYKFLIQESFSEILYNEDDIKSRGKRLSDHCPISIDY 302
+ N+ LR ID + Q + ++ + I Y ++ SDH P+ +
Sbjct: 221 DDNRGLR----IDLLLASQPLAECCVE---TGIDYEIRS----MEKPSDHAPVWATF 266
>d2imqx1 d.151.1.2 (X:3-282) Salivary nitrophorin {Bedbug (Cimex
lectularius) [TaxId: 79782]}
Length = 280
Score = 40.4 bits (93), Expect = 2e-04
Identities = 32/296 (10%), Positives = 67/296 (22%), Gaps = 39/296 (13%)
Query: 23 KVRLVSWNINTLSEQEGVSLWKNSVKRTTSDYTLLRQYAKNLDADIVFLQEMGSYNAVAK 82
V VSWN + + D V +Q G
Sbjct: 6 SVHTVSWNSGHERAPTNLEELLGLNSG------------ETPDVIAVAVQGFGFQTD--- 50
Query: 83 VFPKNTWCI--FYSTERLINHSKRDSNNDIHTAIAVRKKNVRVLQQSYPLLGAKDSFSRA 140
+ C+ F S ++K + + V + Q + +
Sbjct: 51 KPQQGPACVKNFQSLLTSKGYTKLKNTITETMGLTVYCLEKHLDQNTLKNETIIVTVDDQ 110
Query: 141 GNRRAVELLVEINGKKIWVLDIHLKS-----------FCFLDSLENTYSPSCSLLSQQAQ 189
+ I K+ + + PS L
Sbjct: 111 KKSGGIVTSFTIYNKRFSFTTSRMSDEDVTSTNTKYAYDTRLDYSKKDDPSDFLFWIGDL 170
Query: 190 WLKDWITQKKESLVPFVIAGDFNRKINYLGNNDDFWKTIDPNDSLIRFPKEKDSRCNANK 249
++ + D + L + + + F + N ++
Sbjct: 171 NVRVETNATHAKSLVDQNNIDGLMAFDQLKKAKEQKLFDGWTEPQVTFKPTYKFKPNTDE 230
Query: 250 NLRNKIP--IDYFVMDQNAYKFLIQESFSEILYNEDDIKSRGKRLSDHCPISIDYD 303
+ P D + K + S+ L N + ++H P+ +
Sbjct: 231 YDLSATPSWTDRALYKSGTGKTIQPLSY-NSLTNY--------KQTEHRPVLAKFR 277
>d1i9za_ d.151.1.2 (A:) Synaptojanin, IPP5C domain {Fission yeast
(Schizosaccharomyces pombe) [TaxId: 4896]}
Length = 345
Score = 35.9 bits (82), Expect = 0.004
Identities = 40/313 (12%), Positives = 83/313 (26%), Gaps = 54/313 (17%)
Query: 23 KVRLVSWNINTLSEQEGVSLWKNSVKRTTSDYTLLRQYAKNLDADIVFLQEMGSYNAVAK 82
K+ + S+N+N S + W L + D +V QE+
Sbjct: 26 KIFVASYNLNGCSATTKLENW------------LFPENTPLADIYVVGFQEIVQLTPQQV 73
Query: 83 VFPKNTWCIFYSTERLINHSKRDSNND------------IHTAIAVRKKNVRVLQQSYPL 130
+ + + + + ++ I ++ + ++
Sbjct: 74 ISADPAKRREWESCVKRLLNGKCTSGPGYVQLRSGQLVGTALMIFCKESCLPSIKNVEGT 133
Query: 131 LGAKDSFSRAGNRRAVELLVEINGKKIWVLDIHLKSFCFLDSLENTYSPSCSLLSQQAQW 190
+ +GN+ AV + + + + HL + Y A
Sbjct: 134 VKKTGLGGVSGNKGAVAIRFDYEDTGLCFITSHLAAG------YTNYDERDHDYRTIASG 187
Query: 191 LKDWITQKKESLVPFVIAGDFNRKINYLGNN------DDFWKTIDPNDSLIRFPKEKDSR 244
L+ + + V GDFN +I+ + D L +
Sbjct: 188 LRFRRGRSIFNHDYVVWFGDFNYRISLTYEEVVPCIAQGKLSYLFEYDQLNKQMLTGKVF 247
Query: 245 CNANKNLRNKIPIDYFVMDQNAY-------------KFLIQESFSEILYNEDDIKSRGKR 291
++ P F + + Y + L + Y +
Sbjct: 248 PFFSELPITFPPTYKFDIGTDIYDTSDKHRVPAWTDRILYRGELVPHSYQSVPLYY---- 303
Query: 292 LSDHCPISIDYDF 304
SDH PI Y+
Sbjct: 304 -SDHRPIYATYEA 315
>d1vyba_ d.151.1.1 (A:) Endonuclease domain of LINE-1 reverse
transcriptase homolog {Human (Homo sapiens) [TaxId:
9606]}
Length = 236
Score = 32.4 bits (72), Expect = 0.048
Identities = 31/283 (10%), Positives = 67/283 (23%), Gaps = 57/283 (20%)
Query: 23 KVRLVSWNINTLSEQEGVSLWKNSVKRTTSDYTLLRQYAKNLDADIVFLQEMGSYNAVAK 82
+ +++ NIN L + L + K+ D + +QE
Sbjct: 5 HITILTLNINGL--------------NSAIKRHRLASWIKSQDPSVCCIQETHLTCRDTH 50
Query: 83 VFPKNTWCIFYSTERLINHSKRDSNNDIHTAIAVRKKNVRVLQQSYPLLGAKDSFSRAGN 142
W Y + AI V K R
Sbjct: 51 RLKIKGWRKIYQANGKQKKA--------GVAILVSDKTDFK----------PTKIKRDKE 92
Query: 143 RRAVELLVEINGKKIWVLDIHLKSFCFLDSLENTYSPSCSLLSQQAQWLKDWITQKKESL 202
+ + I +++ +L+I+ + +++K ++ + L
Sbjct: 93 GHYIMVKGSIQQEELTILNIYAPNTGAP------------------RFIKQVLSDLQRDL 134
Query: 203 VPFVIAGDFNRKINYLGNNDDFWKTIDPNDSLIRFPKEKDSRCNANKNLRNKIPIDYFVM 262
+ + K L + D +F
Sbjct: 135 DSHTLIMGDFNTPLSTLDRSTRQKVNKDTQELNSALHQADLIDIYRTLHPKSTEYTFFSA 194
Query: 263 DQNAYK----FLIQESFSEILYNEDDIKSRGKRLSDHCPISID 301
+ Y + ++ + LSDH I ++
Sbjct: 195 PHHTYSKIDHIVGSKALLSKC---KRTEIITNYLSDHSAIKLE 234
>d1a62a2 b.40.4.5 (A:48-125) Rho termination factor, RNA-binding
domain {Escherichia coli [TaxId: 562]}
Length = 78
Score = 27.8 bits (62), Expect = 1.3
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 159 VLDIHLKSFCFLDSLENTYSPS 180
VL+I F FL S +++Y
Sbjct: 7 VLEILQDGFGFLRSADSSYLAG 28
>d1xzpa1 a.24.25.1 (A:118-211,A:372-450) TrmE connector domain
{Thermotoga maritima [TaxId: 2336]}
Length = 173
Score = 27.5 bits (60), Expect = 1.4
Identities = 15/85 (17%), Positives = 23/85 (27%), Gaps = 2/85 (2%)
Query: 86 KNTWCIFYSTERLINHSKRDSNNDIHTAIAVRKKNVRVLQQSYPLLGAKDSFSRAGNRRA 145
+ E S N + K G + RA
Sbjct: 86 DAGILLNRGQEIFERGSDSLITNLRQKQLLENVKGHLEDAIKSLKEGMPVDMASIDLERA 145
Query: 146 VELLVEINGKKIW--VLDIHLKSFC 168
+ LL E+ G+ +LD +FC
Sbjct: 146 LNLLDEVTGRSFREDLLDTIFSNFC 170
>d2gdta1 d.346.1.1 (A:2-116) Nsp1 {SARS coronavirus [TaxId: 227859]}
Length = 115
Score = 27.3 bits (60), Expect = 1.8
Identities = 14/61 (22%), Positives = 28/61 (45%)
Query: 94 STERLINHSKRDSNNDIHTAIAVRKKNVRVLQQSYPLLGAKDSFSRAGNRRAVELLVEIN 153
S E ++ ++ N + + K + L+Q Y + D+ S + VEL+ E++
Sbjct: 22 SVEEALSEAREHLKNGTCGLVELEKGVLPQLEQPYVFIKRSDALSTNHGHKVVELVAEMD 81
Query: 154 G 154
G
Sbjct: 82 G 82
>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA
methyltransferase Trm1 {Pyrococcus horikoshii [TaxId:
53953]}
Length = 375
Score = 26.5 bits (58), Expect = 2.6
Identities = 13/57 (22%), Positives = 21/57 (36%), Gaps = 11/57 (19%)
Query: 107 NNDIHTAIAVRKKNVRVLQQSYPLLGAKDSFSRAGNRRAVELLVEINGKKIWVLDIH 163
N DI + VL D+ S G R + +E +++W+ DI
Sbjct: 33 NRDIVVVLLNILNPKIVL----------DALSATGIR-GIRFALETPAEEVWLNDIS 78
>d1bwda_ d.126.1.2 (A:) L-arginine: inosamine-phosphate
amidinotransferase {Streptomyces griseus [TaxId: 1911]}
Length = 348
Score = 24.9 bits (53), Expect = 8.2
Identities = 19/92 (20%), Positives = 27/92 (29%), Gaps = 8/92 (8%)
Query: 138 SRAGNRRAVELLVEINGKKIWVLDI-------HLKS-FCFLDSLENTYSPSCSLLSQQAQ 189
S +GN + L G V H+ S L +PS
Sbjct: 195 SDSGNELGAKWLQSAVGDTYTVHPCRKLYASTHVDSTIVPLRPGLVLTNPSRVNDENMPD 254
Query: 190 WLKDWITQKKESLVPFVIAGDFNRKINYLGNN 221
+L+ W LV GD ++G N
Sbjct: 255 FLRSWENITCPELVDIGFTGDKPHCSVWIGMN 286
>d1cv8a_ d.3.1.1 (A:) Staphopain StpA {Staphylococcus aureus [TaxId:
1280]}
Length = 173
Score = 24.9 bits (54), Expect = 9.8
Identities = 14/66 (21%), Positives = 22/66 (33%), Gaps = 9/66 (13%)
Query: 59 QYAKNLDADIVFLQEMGSYNAVAKVFPKNTWCIFYSTERLINHSKRDSNNDIHT--AIAV 116
+ + L M +YN V + N I S+ +S N +H A+AV
Sbjct: 71 YFGQTQGRSPQLLNRMTTYNEVDNLTKNN-------KGIAILGSRVESRNGMHAGHAMAV 123
Query: 117 RKKNVR 122
Sbjct: 124 VGNAKL 129
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.135 0.408
Gapped
Lambda K H
0.267 0.0427 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,128,303
Number of extensions: 51343
Number of successful extensions: 172
Number of sequences better than 10.0: 1
Number of HSP's gapped: 153
Number of HSP's successfully gapped: 26
Length of query: 304
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 219
Effective length of database: 1,240,546
Effective search space: 271679574
Effective search space used: 271679574
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)