254781004
threonyl-tRNA synthetase
| GeneID in NCBI database: | 8210026 | Locus tag: | CLIBASIA_04525 |
| Protein GI in NCBI database: | 254781004 | Protein Accession: | YP_003065417.1 |
| Gene range: | -(1000849, 1002807) | Protein Length: | 652aa |
| Gene description: | threonyl-tRNA synthetase | ||
| COG prediction: | [J] Threonyl-tRNA synthetase | ||
| KEGG prediction: | thrS; threonyl-tRNA synthetase (EC:6.1.1.3); K01868 threonyl-tRNA synthetase [EC:6.1.1.3] | ||
| SEED prediction: | Threonyl-tRNA synthetase (EC 6.1.1.3) | ||
| Pathway involved in KEGG: | Aminoacyl-tRNA biosynthesis [PATH:las00970] | ||
| Subsystem involved in SEED: | tRNA aminoacylation, Thr | ||
| sequence | sequence profile | ||
Prediction of Local Sequence Properties
| Source | Summary | Result |
|---|
|
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Close Homologs Detected by BLAST or PSI-BLAST
Homolog within the Genome Detected by BLAST
Original result of BLAST against C. L. asiaticus genome
| Identity | Alignment graph | Length | Definition | E-value | |
| Target | 652 | threonyl-tRNA synthetase [Candidatus Liberibacter asiat | |||
| 254780870 | 449 | prolyl-tRNA synthetase [Candidatus Liberibacter as | 2e-07 | ||
| 254780191 | 898 | alanyl-tRNA synthetase [Candidatus Liberibacter as | 4e-07 |
| >gi|254780870|ref|YP_003065283.1| prolyl-tRNA synthetase [Candidatus Liberibacter asiaticus str. psy62] Length = 449 | Back alignment |
|---|
Score = 49.3 bits (116), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 76/183 (41%), Gaps = 11/183 (6%)
Query: 258 IAEDGSGVIFWHRKGWKIFQTLISYMRR-KIKDDYEEINTPQVLDQHLWQQSGHWDSYRA 316
I + G+ W G K + + +R + + E++ P + LW +SG +DSY
Sbjct: 32 IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
Query: 317 NMFAVKCADDTIKDLRTFALKPMNCPGHVAVFNHGLKSYRELPVRLAEFGSVYRNEPSGS 376
M + +D + P + +F +KSYR LP + +R+E
Sbjct: 92 EMLRLADRND-----KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
Query: 377 LHGLMRVRGFTQDDAHVF-CTKEQMFNECLKIHNLIISIYKDFGFEKIMVKLSTRPEKRV 435
G+MR R F DA+ F T E + K+ + I+ G + I ++ + P +
Sbjct: 147 F-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---I 202
Query: 436 GSD 438
G D
Sbjct: 203 GGD 205
|
| >gi|254780191|ref|YP_003064604.1| alanyl-tRNA synthetase [Candidatus Liberibacter asiaticus str. psy62] Length = 898 | Back alignment |
|---|
Score = 48.1 bits (113), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 75/183 (40%), Gaps = 10/183 (5%)
Query: 22 TGSDVAESISRSLA---KKAVAVAINGKVCDLSDPVREGSIEIITPEDPRSLAVIRHSCA 78
TG + + I + KKA + ++ + + E S+ + R I HS
Sbjct: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
Query: 79 HIMAEAVQSIW-PEVQVAIGPIIEDGFYYDFDKEQPFSSDELAQIEKKMQEIIARDSPFL 137
H++ A+ +I V I DG +D +P +S EL IE + +IIA++ P +
Sbjct: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
Query: 138 KQYLSHEKARELFESKKEAYKVEILESIPAKENVTLYRQGEWFD--LCRGPHVRSTGQVK 195
+ ++ E A + K + + E Y G LC G HV STG++
Sbjct: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVE----YEDGGVHSSALCGGTHVSSTGEIM 706
Query: 196 KFF 198
+
Sbjct: 707 LLY 709
|
Close Homologs Detected BLAST or PSI-BLAST in the First 2 Iterations
Original result of PSI-BLAST first 2 iterations
| Identity | Alignment graph | Length | Definition | Round | E-value |
| Target | 652 | threonyl-tRNA synthetase [Candidatus Liberibacter asiat | |||
| 315122407 | 653 | threonyl-tRNA synthetase [Candidatus Liberibacter solan | 1 | 0.0 | |
| 227821825 | 661 | threonyl-tRNA synthetase [Sinorhizobium fredii NGR234] | 1 | 0.0 | |
| 86357812 | 668 | threonyl-tRNA synthetase [Rhizobium etli CFN 42] Length | 1 | 0.0 | |
| 15965178 | 661 | threonyl-tRNA synthetase [Sinorhizobium meliloti 1021] | 1 | 0.0 | |
| 150396275 | 660 | threonyl-tRNA synthetase [Sinorhizobium medicae WSM419] | 1 | 0.0 | |
| 307321522 | 660 | threonyl-tRNA synthetase [Sinorhizobium meliloti AK83] | 1 | 0.0 | |
| 190891876 | 668 | threonyl-tRNA synthetase [Rhizobium etli CIAT 652] Leng | 1 | 0.0 | |
| 327188321 | 668 | threonyl-tRNA synthetase protein [Rhizobium etli CNPAF5 | 1 | 0.0 | |
| 222086050 | 662 | threonyl-tRNA synthetase [Agrobacterium radiobacter K84 | 1 | 0.0 | |
| 307309192 | 660 | threonyl-tRNA synthetase [Sinorhizobium meliloti BL225C | 1 | 0.0 |
| >gi|315122407|ref|YP_004062896.1| threonyl-tRNA synthetase [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 653 | Back alignment and organism information |
|---|
Score = 1163 bits (3008), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 537/652 (82%), Positives = 599/652 (91%)
Query: 1 MPSDIKLTFPDGSIKNFPVHATGSDVAESISRSLAKKAVAVAINGKVCDLSDPVREGSIE 60
MPS+I LTFPDG IKNFP H TG DVAESIS+S+AKKA+AVAING +CDLSD ++ GSIE
Sbjct: 1 MPSNITLTFPDGLIKNFPAHTTGYDVAESISKSIAKKAIAVAINGTICDLSDTIQTGSIE 60
Query: 61 IITPEDPRSLAVIRHSCAHIMAEAVQSIWPEVQVAIGPIIEDGFYYDFDKEQPFSSDELA 120
IITPEDPRSL VIRHSCAHIMAEAVQSIWP+ QVAIGP+IE+GFYYDF++E+PFSSD+ A
Sbjct: 61 IITPEDPRSLVVIRHSCAHIMAEAVQSIWPKTQVAIGPVIENGFYYDFNREEPFSSDDFA 120
Query: 121 QIEKKMQEIIARDSPFLKQYLSHEKARELFESKKEAYKVEILESIPAKENVTLYRQGEWF 180
+IEKKM EI+ RDSPF K+ LS E+AR+LFESK E YK+EILE IPA+++VT+Y QGEW
Sbjct: 121 KIEKKMHEIVTRDSPFCKKRLSREQARKLFESKNETYKLEILEKIPAEQDVTIYNQGEWL 180
Query: 181 DLCRGPHVRSTGQVKKFFKLMKVAGAYWRGDSNRPMLSRIYGTAWNTQQELTQYLYFLEE 240
DLCRGPHV+STGQ+KKFFKLMKVAGAYWRGD+ RPMLSRIYGTAWN+QQELTQYL F+ E
Sbjct: 181 DLCRGPHVQSTGQIKKFFKLMKVAGAYWRGDNTRPMLSRIYGTAWNSQQELTQYLDFIVE 240
Query: 241 SEKRDHRKLAREMDLFHIAEDGSGVIFWHRKGWKIFQTLISYMRRKIKDDYEEINTPQVL 300
SEKRDHRK+AREMDLFH AEDGSGVIFWH+KGWK FQTLISYMRRKIKDDYEEINTPQVL
Sbjct: 241 SEKRDHRKIAREMDLFHTAEDGSGVIFWHQKGWKTFQTLISYMRRKIKDDYEEINTPQVL 300
Query: 301 DQHLWQQSGHWDSYRANMFAVKCADDTIKDLRTFALKPMNCPGHVAVFNHGLKSYRELPV 360
DQ+LW+QSGHWD YRANMFAV+CAD+TIKDLR+FALKPMNCPGHV +F HGLKSYRELPV
Sbjct: 301 DQNLWKQSGHWDWYRANMFAVQCADETIKDLRSFALKPMNCPGHVEIFKHGLKSYRELPV 360
Query: 361 RLAEFGSVYRNEPSGSLHGLMRVRGFTQDDAHVFCTKEQMFNECLKIHNLIISIYKDFGF 420
RLAEFGSVYRNEPSGSLHGLMRVRGFTQDDAHVFCTKEQMF ECLKIHNLI+SIYKDFGF
Sbjct: 361 RLAEFGSVYRNEPSGSLHGLMRVRGFTQDDAHVFCTKEQMFEECLKIHNLIVSIYKDFGF 420
Query: 421 EKIMVKLSTRPEKRVGSDALWDDAENIMKGVLDTIKNSSQDRINTGVLLGEGAFYGPKFE 480
E I VKLSTRPEKRVGSDALWDDAE+IM+ VL+TIK SSQ +INTG+L GEGAFYGPKFE
Sbjct: 421 ENITVKLSTRPEKRVGSDALWDDAESIMQTVLNTIKTSSQSKINTGILPGEGAFYGPKFE 480
Query: 481 YILKDAIGRDWQCGTIQVDFNLPSRFNAFYVNSHSEKCHPVMIHRAVFGSIERFIGIMIE 540
YILKDAIGR+WQCGT Q+DFNLP RFNAFY+NS SEKCHPVMIHRAVFGSIERFIGIMIE
Sbjct: 481 YILKDAIGREWQCGTTQIDFNLPHRFNAFYINSQSEKCHPVMIHRAVFGSIERFIGIMIE 540
Query: 541 NFKGNLPLWLSPIQAIVTTITSSAVEYAQEIANLLKSHHLSIETDFRNETINYKIREHSI 600
NFKG+LPLWLSP+QA+VTTITSS++EYAQE+ LLKS+ LSIETDFRNE INYKIREHS
Sbjct: 541 NFKGHLPLWLSPVQAVVTTITSSSIEYAQEVTALLKSNDLSIETDFRNEKINYKIREHSS 600
Query: 601 KKIPIIIICGDKEASERSIGIRRFGSTTTQKVSLLDAIPILTKESLPPDCQK 652
KKIP+IIICGDKE ERSI IRR GS T+Q +++LDA+ ++T+ESLPPD K
Sbjct: 601 KKIPLIIICGDKETQERSIVIRRLGSKTSQSLNILDAVQMITQESLPPDMIK 652
|
Species: Candidatus Liberibacter solanacearum Genus: Candidatus Liberibacter Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|227821825|ref|YP_002825795.1| threonyl-tRNA synthetase [Sinorhizobium fredii NGR234] Length = 661 | Back alignment and organism information |
|---|
Score = 941 bits (2433), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 416/652 (63%), Positives = 534/652 (81%)
Query: 1 MPSDIKLTFPDGSIKNFPVHATGSDVAESISRSLAKKAVAVAINGKVCDLSDPVREGSIE 60
M + LTFPDGS++ F TG DVAESIS+SLAKKAVA+A++G++ DLSDP+ +G IE
Sbjct: 1 MSHSVSLTFPDGSVREFAAGTTGRDVAESISKSLAKKAVAIALDGELRDLSDPIADGKIE 60
Query: 61 IITPEDPRSLAVIRHSCAHIMAEAVQSIWPEVQVAIGPIIEDGFYYDFDKEQPFSSDELA 120
I+T ED R+L +IRH AH+MAEAVQ +WP QV IGP+I++GFYYDF K +PF+ D+L
Sbjct: 61 IVTREDKRALELIRHDAAHVMAEAVQELWPGTQVTIGPVIDNGFYYDFAKNEPFTPDDLP 120
Query: 121 QIEKKMQEIIARDSPFLKQYLSHEKARELFESKKEAYKVEILESIPAKENVTLYRQGEWF 180
IEKKM+EIIAR++PF K+ S +KA+E+F +K E+YKVE++++IP +++ +Y QG+WF
Sbjct: 121 VIEKKMKEIIARNNPFSKEVWSRDKAKEVFAAKGESYKVELVDAIPEGQDLKIYYQGDWF 180
Query: 181 DLCRGPHVRSTGQVKKFFKLMKVAGAYWRGDSNRPMLSRIYGTAWNTQQELTQYLYFLEE 240
DLCRGPH+ STGQ+ FKLMKVAGAYWRGDSN PML+RIYGTAW+TQ+EL QYL+ L E
Sbjct: 181 DLCRGPHMASTGQIGTAFKLMKVAGAYWRGDSNNPMLTRIYGTAWHTQEELDQYLHVLAE 240
Query: 241 SEKRDHRKLAREMDLFHIAEDGSGVIFWHRKGWKIFQTLISYMRRKIKDDYEEINTPQVL 300
+EKRDHR+L REMDLFH E+G GV+FWH KGW++FQ+L++YMRR+++ DY+E+N PQVL
Sbjct: 241 AEKRDHRRLGREMDLFHFQEEGPGVVFWHGKGWRVFQSLVAYMRRRLEVDYQEVNAPQVL 300
Query: 301 DQHLWQQSGHWDSYRANMFAVKCADDTIKDLRTFALKPMNCPGHVAVFNHGLKSYRELPV 360
D+ LW+ SGHW YR NMF V A D D R FALKPMNCPGH+ +F HGLKSYRELPV
Sbjct: 301 DKSLWETSGHWGWYRDNMFKVTVAGDETDDDRVFALKPMNCPGHIQIFKHGLKSYRELPV 360
Query: 361 RLAEFGSVYRNEPSGSLHGLMRVRGFTQDDAHVFCTKEQMFNECLKIHNLIISIYKDFGF 420
R+AEFG+V+R EPSG+LHGLMRVRGFTQDDAH+FCT EQM ECLKI++LI+S+Y+DFGF
Sbjct: 361 RMAEFGAVHRYEPSGALHGLMRVRGFTQDDAHIFCTDEQMAAECLKINDLILSVYEDFGF 420
Query: 421 EKIMVKLSTRPEKRVGSDALWDDAENIMKGVLDTIKNSSQDRINTGVLLGEGAFYGPKFE 480
++I+VKLSTRP+KRVGSDALWD AE +M VL+TI+ S+ RI TG+L GEGAFYGPKFE
Sbjct: 421 KEIVVKLSTRPDKRVGSDALWDRAEAVMTDVLNTIEAQSEGRIKTGILPGEGAFYGPKFE 480
Query: 481 YILKDAIGRDWQCGTIQVDFNLPSRFNAFYVNSHSEKCHPVMIHRAVFGSIERFIGIMIE 540
Y LKDAIGR+WQCGT QVDFNLP RF AFY++ SEK PVMIHRA+ GS+ERF+GI++E
Sbjct: 481 YTLKDAIGREWQCGTTQVDFNLPERFGAFYIDKDSEKRQPVMIHRAICGSMERFLGILLE 540
Query: 541 NFKGNLPLWLSPIQAIVTTITSSAVEYAQEIANLLKSHHLSIETDFRNETINYKIREHSI 600
N+ G++PLW+SP+Q +V TITS A +Y +E+A L+ L++ETDFRNE INYKIREHS+
Sbjct: 541 NYAGHMPLWISPLQVVVATITSDADDYGREVAARLREAGLTVETDFRNEKINYKIREHSV 600
Query: 601 KKIPIIIICGDKEASERSIGIRRFGSTTTQKVSLLDAIPILTKESLPPDCQK 652
K+P+I++CG +EA ERS+ IRR GS +SL +A+ L+ E++ PD ++
Sbjct: 601 TKVPVIVVCGKREAEERSVNIRRLGSQAQTAMSLEEAVAALSSEAMAPDLKR 652
|
Species: Sinorhizobium fredii Genus: Sinorhizobium Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|86357812|ref|YP_469704.1| threonyl-tRNA synthetase [Rhizobium etli CFN 42] Length = 668 | Back alignment and organism information |
|---|
Score = 941 bits (2432), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 432/658 (65%), Positives = 525/658 (79%), Gaps = 6/658 (0%)
Query: 1 MPSDIKLTFPDGSIKNFPVHATGSDVAESISRSLAKKAVAVAINGKVCDLSDPVREGSIE 60
M + LTFPDGS+++FP ATG DVAESIS+SLAK AVA+AI+G V DLSD V +G IE
Sbjct: 1 MSQSVSLTFPDGSVRSFPAGATGRDVAESISKSLAKSAVAIAIDGGVRDLSDAVTDGKIE 60
Query: 61 IITPEDPRSLAVIRHSCAHIMAEAVQSIWPEVQVAIGPIIEDGFYYDFDKEQPFSSDELA 120
IIT +DPR+L +IRH AH+MAEAVQ +WP QV IGP+IE+GFYYDF K +PF+ D+L
Sbjct: 61 IITRKDPRALELIRHDAAHVMAEAVQELWPGTQVTIGPVIENGFYYDFAKNEPFTPDDLP 120
Query: 121 QIEKKMQEIIARDSPFLKQYLSHEKARELFESKKEAYKVEILESIPAKENVTLYRQGEWF 180
+IEKKM+EIIAR++PF KQ S EKA+E+F +K E YKVE++++IP +++ +Y QGEWF
Sbjct: 121 KIEKKMKEIIARNAPFTKQIWSREKAKEVFAAKGEQYKVELVDAIPEGQDLKIYHQGEWF 180
Query: 181 DLCRGPHVRSTGQVKKFFKLMKVAGAYWRGDSNRPMLSRIYGTAWNTQQELTQYLYFLEE 240
DLCRGPH+ STGQV FKLMKVAGAYWRGDSN MLSRIYGTAW Q +L YL+ L E
Sbjct: 181 DLCRGPHMASTGQVGTAFKLMKVAGAYWRGDSNNAMLSRIYGTAWADQADLDNYLHMLAE 240
Query: 241 SEKRDHRKLAREMDLFHIAEDGSGVIFWHRKGWKIFQTLISYMRRKIKDDYEEINTPQVL 300
+EKRDHRKL REMDLFH E+G GV+FWH KGW+IFQTL++YMRR++ DYEE+N PQVL
Sbjct: 241 AEKRDHRKLGREMDLFHFQEEGPGVVFWHGKGWRIFQTLVAYMRRRLAIDYEEVNAPQVL 300
Query: 301 DQHLWQQSGHWDSYRANMFAVKCA------DDTIKDLRTFALKPMNCPGHVAVFNHGLKS 354
D LW+ SGHW Y+ NMF VK A DD D R FALKPMNCPGHV +F HGLKS
Sbjct: 301 DTSLWETSGHWGWYQENMFGVKSAHAMTHPDDKEADNRVFALKPMNCPGHVQIFKHGLKS 360
Query: 355 YRELPVRLAEFGSVYRNEPSGSLHGLMRVRGFTQDDAHVFCTKEQMFNECLKIHNLIISI 414
YRELP+RLAEFG V+R EPSG+LHGLMRVRGFTQDDAH+FCT EQM ECLKI++LI+S+
Sbjct: 361 YRELPIRLAEFGLVHRYEPSGALHGLMRVRGFTQDDAHIFCTDEQMAAECLKINDLILSV 420
Query: 415 YKDFGFEKIMVKLSTRPEKRVGSDALWDDAENIMKGVLDTIKNSSQDRINTGVLLGEGAF 474
Y+DFGF++I+VKLSTRPEKRVGSDALWD AE +M VL TI+ S+ RI TG+L GEGAF
Sbjct: 421 YEDFGFKEIVVKLSTRPEKRVGSDALWDRAEAVMTDVLKTIEAQSEGRIKTGILPGEGAF 480
Query: 475 YGPKFEYILKDAIGRDWQCGTIQVDFNLPSRFNAFYVNSHSEKCHPVMIHRAVFGSIERF 534
YGPKFEY LKDAIGR+WQCGT QVDFNLP RF AFY++S+SEK PVMIHRA+ GS+ERF
Sbjct: 481 YGPKFEYTLKDAIGREWQCGTTQVDFNLPERFGAFYIDSNSEKTQPVMIHRAICGSMERF 540
Query: 535 IGIMIENFKGNLPLWLSPIQAIVTTITSSAVEYAQEIANLLKSHHLSIETDFRNETINYK 594
+GI+IENF G++PLW+SP+Q +V TITS A Y E+A L+ L++ETDFRNE INYK
Sbjct: 541 LGILIENFAGHMPLWVSPLQVVVATITSEADAYGLEVAEALREAGLNVETDFRNEKINYK 600
Query: 595 IREHSIKKIPIIIICGDKEASERSIGIRRFGSTTTQKVSLLDAIPILTKESLPPDCQK 652
IREHS+ K+P+II+CG KEA +R++ IRR GS + L A+ L E+ PPD ++
Sbjct: 601 IREHSVTKVPVIIVCGRKEAEDRTVNIRRLGSQDQVSMGLDTAVESLALEATPPDVRR 658
|
Species: Rhizobium etli Genus: Rhizobium Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|15965178|ref|NP_385531.1| threonyl-tRNA synthetase [Sinorhizobium meliloti 1021] Length = 661 | Back alignment and organism information |
|---|
Score = 940 bits (2430), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 419/652 (64%), Positives = 530/652 (81%)
Query: 1 MPSDIKLTFPDGSIKNFPVHATGSDVAESISRSLAKKAVAVAINGKVCDLSDPVREGSIE 60
M + LTFPDGS++ F TG DVAESIS+SLAKKAVA+AI+G++ DLSD V EG IE
Sbjct: 2 MSHSVSLTFPDGSVREFAAGTTGRDVAESISKSLAKKAVAIAISGELRDLSDAVTEGRIE 61
Query: 61 IITPEDPRSLAVIRHSCAHIMAEAVQSIWPEVQVAIGPIIEDGFYYDFDKEQPFSSDELA 120
I+T ED R+L +IRH AH+MAEAVQ +WP QV IGP+I++GFYYDF K +PF+ D+L
Sbjct: 62 IVTREDKRALELIRHDAAHVMAEAVQELWPGTQVTIGPVIDNGFYYDFAKNEPFTPDDLP 121
Query: 121 QIEKKMQEIIARDSPFLKQYLSHEKARELFESKKEAYKVEILESIPAKENVTLYRQGEWF 180
IEKKM+EIIAR+ PF K+ S ++A+E+F +K E YKVE++++IP +++ +Y QG+WF
Sbjct: 122 VIEKKMREIIARNKPFTKEVWSRDRAKEVFAAKGENYKVELVDAIPEGQDLKIYYQGDWF 181
Query: 181 DLCRGPHVRSTGQVKKFFKLMKVAGAYWRGDSNRPMLSRIYGTAWNTQQELTQYLYFLEE 240
DLCRGPH+ STGQ+ FKLMKVAGAYWRGDSN PML+RIYGTAW+TQ+EL QYL+ L E
Sbjct: 182 DLCRGPHMASTGQIGTAFKLMKVAGAYWRGDSNNPMLTRIYGTAWHTQEELDQYLHVLAE 241
Query: 241 SEKRDHRKLAREMDLFHIAEDGSGVIFWHRKGWKIFQTLISYMRRKIKDDYEEINTPQVL 300
+EKRDHR+L REMDLFH E+G GV+FWH KGW+IFQ+L++YMRR+++ DY+E+N PQVL
Sbjct: 242 AEKRDHRRLGREMDLFHFQEEGPGVVFWHGKGWRIFQSLVAYMRRRLEGDYQEVNAPQVL 301
Query: 301 DQHLWQQSGHWDSYRANMFAVKCADDTIKDLRTFALKPMNCPGHVAVFNHGLKSYRELPV 360
D+ LW+ SGHW YR NMF V A D D R FALKPMNCPGH+ +F HGLKSYRELPV
Sbjct: 302 DKSLWETSGHWGWYRDNMFKVTVAGDDTDDDRVFALKPMNCPGHIQIFKHGLKSYRELPV 361
Query: 361 RLAEFGSVYRNEPSGSLHGLMRVRGFTQDDAHVFCTKEQMFNECLKIHNLIISIYKDFGF 420
RLAEFG+V+R EPSG+LHGLMRVRGFTQDDAH+FCT EQM ECLKI++LI+S+Y+DFGF
Sbjct: 362 RLAEFGAVHRYEPSGALHGLMRVRGFTQDDAHIFCTDEQMAAECLKINDLILSVYEDFGF 421
Query: 421 EKIMVKLSTRPEKRVGSDALWDDAENIMKGVLDTIKNSSQDRINTGVLLGEGAFYGPKFE 480
++I+VKLSTRPEKRVGSD LWD AE +M VL TI+ S+ RI TG+L GEGAFYGPKFE
Sbjct: 422 KEIVVKLSTRPEKRVGSDELWDRAEAVMTEVLQTIEEQSEGRIKTGILPGEGAFYGPKFE 481
Query: 481 YILKDAIGRDWQCGTIQVDFNLPSRFNAFYVNSHSEKCHPVMIHRAVFGSIERFIGIMIE 540
Y LKDAIGR+WQCGT QVDFNLP RF AFY++S SEK PVMIHRA+ GS+ERF+GI++E
Sbjct: 482 YTLKDAIGREWQCGTTQVDFNLPERFGAFYIDSESEKRQPVMIHRAICGSMERFLGILLE 541
Query: 541 NFKGNLPLWLSPIQAIVTTITSSAVEYAQEIANLLKSHHLSIETDFRNETINYKIREHSI 600
N+ G++PLW+SP+Q +V TITS A +Y +E+A L+ L++ETDFRNE INYK+REHS+
Sbjct: 542 NYAGHMPLWISPLQVVVATITSEADDYGREVAERLRDAGLTVETDFRNEKINYKVREHSV 601
Query: 601 KKIPIIIICGDKEASERSIGIRRFGSTTTQKVSLLDAIPILTKESLPPDCQK 652
K+P+I++CG +EA ERS+ IRR GS +SL +A+ L+ E++ PD ++
Sbjct: 602 TKVPVIVVCGRREAEERSVNIRRLGSQAQTAMSLDEAVASLSAEAMAPDLKR 653
|
Species: Sinorhizobium meliloti Genus: Sinorhizobium Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|150396275|ref|YP_001326742.1| threonyl-tRNA synthetase [Sinorhizobium medicae WSM419] Length = 660 | Back alignment and organism information |
|---|
Score = 940 bits (2429), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 420/652 (64%), Positives = 530/652 (81%)
Query: 1 MPSDIKLTFPDGSIKNFPVHATGSDVAESISRSLAKKAVAVAINGKVCDLSDPVREGSIE 60
M + LTFPDGS++ F TG DVAESIS+SLAKK+VA+AI+G++ DLSDPV EG IE
Sbjct: 1 MSHSVSLTFPDGSVREFAPGTTGRDVAESISKSLAKKSVAIAIDGELRDLSDPVTEGRIE 60
Query: 61 IITPEDPRSLAVIRHSCAHIMAEAVQSIWPEVQVAIGPIIEDGFYYDFDKEQPFSSDELA 120
I+T ED R+L +IRH AH+MAEAVQ +WP QV IGP+I++GFYYDF K +PF+ D+L
Sbjct: 61 IVTREDKRALELIRHDAAHVMAEAVQELWPGTQVTIGPVIDNGFYYDFAKNEPFTPDDLP 120
Query: 121 QIEKKMQEIIARDSPFLKQYLSHEKARELFESKKEAYKVEILESIPAKENVTLYRQGEWF 180
IEK+M+EIIAR+ PF K+ S +KA+E+F K E+YKVE++++IP +++ +Y QG+WF
Sbjct: 121 VIEKRMREIIARNKPFTKEVWSRDKAKEVFAVKGESYKVELVDAIPEGQDLKIYYQGDWF 180
Query: 181 DLCRGPHVRSTGQVKKFFKLMKVAGAYWRGDSNRPMLSRIYGTAWNTQQELTQYLYFLEE 240
DLCRGPH+ STGQ+ FKLMKVAGAYWRGDSN PML+RIYGTAW+TQ+EL QYL+ L E
Sbjct: 181 DLCRGPHMASTGQIGTAFKLMKVAGAYWRGDSNNPMLTRIYGTAWHTQEELDQYLHVLAE 240
Query: 241 SEKRDHRKLAREMDLFHIAEDGSGVIFWHRKGWKIFQTLISYMRRKIKDDYEEINTPQVL 300
+EKRDHR+L REMDLFH E+G GV+FWH KGW+IFQ+L++YMRR+++ DY+E+N PQVL
Sbjct: 241 AEKRDHRRLGREMDLFHFQEEGPGVVFWHGKGWRIFQSLVAYMRRRLEGDYQEVNAPQVL 300
Query: 301 DQHLWQQSGHWDSYRANMFAVKCADDTIKDLRTFALKPMNCPGHVAVFNHGLKSYRELPV 360
D+ LW+ SGHW YR NMF V A D D R FALKPMNCPGH+ +F HGLKSYRELPV
Sbjct: 301 DKSLWETSGHWGWYRDNMFKVTVAGDDTDDDRVFALKPMNCPGHIQIFKHGLKSYRELPV 360
Query: 361 RLAEFGSVYRNEPSGSLHGLMRVRGFTQDDAHVFCTKEQMFNECLKIHNLIISIYKDFGF 420
RLAEFG+V+R EPSG+LHGLMRVRGFTQDDAH+FCT EQM ECLKI++LI+S+Y+DFGF
Sbjct: 361 RLAEFGAVHRYEPSGALHGLMRVRGFTQDDAHIFCTDEQMAAECLKINDLILSVYEDFGF 420
Query: 421 EKIMVKLSTRPEKRVGSDALWDDAENIMKGVLDTIKNSSQDRINTGVLLGEGAFYGPKFE 480
++I+VKLSTRPEKRVGSD LWD AE +M VL TI+ S+ RI TG+L GEGAFYGPKFE
Sbjct: 421 KEIVVKLSTRPEKRVGSDELWDRAEAVMTEVLKTIEAQSEGRIKTGILPGEGAFYGPKFE 480
Query: 481 YILKDAIGRDWQCGTIQVDFNLPSRFNAFYVNSHSEKCHPVMIHRAVFGSIERFIGIMIE 540
Y LKDAIGR+WQCGT QVDFNLP RF AFY++S SEK PVMIHRA+ GS+ERF+GI++E
Sbjct: 481 YTLKDAIGREWQCGTTQVDFNLPERFGAFYIDSESEKRQPVMIHRAICGSMERFLGILLE 540
Query: 541 NFKGNLPLWLSPIQAIVTTITSSAVEYAQEIANLLKSHHLSIETDFRNETINYKIREHSI 600
NF G++PLW+SP+Q +V TITS A +Y +E+A L+ L++ETDFRNE INYK+REHS+
Sbjct: 541 NFAGHMPLWISPLQVVVATITSEADDYGREVAERLRDAGLTVETDFRNEKINYKVREHSV 600
Query: 601 KKIPIIIICGDKEASERSIGIRRFGSTTTQKVSLLDAIPILTKESLPPDCQK 652
K+P+I++CG +EA ERS+ IRR GS +SL +A+ L+ E+ PD ++
Sbjct: 601 TKVPVIVVCGKREAEERSVNIRRLGSQAQTAMSLDEAVASLSAEATAPDLKR 652
|
Species: Sinorhizobium medicae Genus: Sinorhizobium Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|307321522|ref|ZP_07600917.1| threonyl-tRNA synthetase [Sinorhizobium meliloti AK83] Length = 660 | Back alignment and organism information |
|---|
Score = 940 bits (2429), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 419/652 (64%), Positives = 530/652 (81%)
Query: 1 MPSDIKLTFPDGSIKNFPVHATGSDVAESISRSLAKKAVAVAINGKVCDLSDPVREGSIE 60
M + LTFPDGS++ F TG DVAESIS+SLAKKAVA+AI+G++ DLSD V EG IE
Sbjct: 1 MSHSVSLTFPDGSVREFAAGTTGRDVAESISKSLAKKAVAIAISGELRDLSDAVTEGRIE 60
Query: 61 IITPEDPRSLAVIRHSCAHIMAEAVQSIWPEVQVAIGPIIEDGFYYDFDKEQPFSSDELA 120
I+T ED R+L +IRH AH+MAEAVQ +WP QV IGP+I++GFYYDF K +PF+ D+L
Sbjct: 61 IVTREDKRALELIRHDAAHVMAEAVQELWPGTQVTIGPVIDNGFYYDFAKNEPFTPDDLP 120
Query: 121 QIEKKMQEIIARDSPFLKQYLSHEKARELFESKKEAYKVEILESIPAKENVTLYRQGEWF 180
IEKKM+EIIAR+ PF K+ S ++A+E+F +K E YKVE++++IP +++ +Y QG+WF
Sbjct: 121 VIEKKMREIIARNKPFTKEVWSRDRAKEVFAAKGENYKVELVDAIPEGQDLKIYYQGDWF 180
Query: 181 DLCRGPHVRSTGQVKKFFKLMKVAGAYWRGDSNRPMLSRIYGTAWNTQQELTQYLYFLEE 240
DLCRGPH+ STGQ+ FKLMKVAGAYWRGDSN PML+RIYGTAW+TQ+EL QYL+ L E
Sbjct: 181 DLCRGPHMASTGQIGTAFKLMKVAGAYWRGDSNNPMLTRIYGTAWHTQEELDQYLHVLAE 240
Query: 241 SEKRDHRKLAREMDLFHIAEDGSGVIFWHRKGWKIFQTLISYMRRKIKDDYEEINTPQVL 300
+EKRDHR+L REMDLFH E+G GV+FWH KGW+IFQ+L++YMRR+++ DY+E+N PQVL
Sbjct: 241 AEKRDHRRLGREMDLFHFQEEGPGVVFWHGKGWRIFQSLVAYMRRRLEGDYQEVNAPQVL 300
Query: 301 DQHLWQQSGHWDSYRANMFAVKCADDTIKDLRTFALKPMNCPGHVAVFNHGLKSYRELPV 360
D+ LW+ SGHW YR NMF V A D D R FALKPMNCPGH+ +F HGLKSYRELPV
Sbjct: 301 DKSLWETSGHWGWYRDNMFKVTVAGDDTDDDRVFALKPMNCPGHIQIFKHGLKSYRELPV 360
Query: 361 RLAEFGSVYRNEPSGSLHGLMRVRGFTQDDAHVFCTKEQMFNECLKIHNLIISIYKDFGF 420
RLAEFG+V+R EPSG+LHGLMRVRGFTQDDAH+FCT EQM ECLKI++LI+S+Y+DFGF
Sbjct: 361 RLAEFGAVHRYEPSGALHGLMRVRGFTQDDAHIFCTDEQMAAECLKINDLILSVYEDFGF 420
Query: 421 EKIMVKLSTRPEKRVGSDALWDDAENIMKGVLDTIKNSSQDRINTGVLLGEGAFYGPKFE 480
++I+VKLSTRPEKRVGSD LWD AE +M VL TI+ S+ RI TG+L GEGAFYGPKFE
Sbjct: 421 KEIVVKLSTRPEKRVGSDELWDRAEAVMTEVLQTIEEQSEGRIKTGILPGEGAFYGPKFE 480
Query: 481 YILKDAIGRDWQCGTIQVDFNLPSRFNAFYVNSHSEKCHPVMIHRAVFGSIERFIGIMIE 540
Y LKDAIGR+WQCGT QVDFNLP RF AFY++S SEK PVMIHRA+ GS+ERF+GI++E
Sbjct: 481 YTLKDAIGREWQCGTTQVDFNLPERFGAFYIDSESEKRQPVMIHRAICGSMERFLGILLE 540
Query: 541 NFKGNLPLWLSPIQAIVTTITSSAVEYAQEIANLLKSHHLSIETDFRNETINYKIREHSI 600
N+ G++PLW+SP+Q +V TITS A +Y +E+A L+ L++ETDFRNE INYK+REHS+
Sbjct: 541 NYAGHMPLWISPLQVVVATITSEADDYGREVAERLRDAGLTVETDFRNEKINYKVREHSV 600
Query: 601 KKIPIIIICGDKEASERSIGIRRFGSTTTQKVSLLDAIPILTKESLPPDCQK 652
K+P+I++CG +EA ERS+ IRR GS +SL +A+ L+ E++ PD ++
Sbjct: 601 TKVPVIVVCGRREAEERSVNIRRLGSQAQTAMSLDEAVASLSAEAMAPDLKR 652
|
Species: Sinorhizobium meliloti Genus: Sinorhizobium Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|190891876|ref|YP_001978418.1| threonyl-tRNA synthetase [Rhizobium etli CIAT 652] Length = 668 | Back alignment and organism information |
|---|
Score = 939 bits (2427), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 432/658 (65%), Positives = 526/658 (79%), Gaps = 6/658 (0%)
Query: 1 MPSDIKLTFPDGSIKNFPVHATGSDVAESISRSLAKKAVAVAINGKVCDLSDPVREGSIE 60
M I LTFPDGS+++FP ATG DVAESIS+SLAK AVA+AI+G V DLSD V +G IE
Sbjct: 1 MSQAISLTFPDGSVRSFPAGATGKDVAESISKSLAKSAVAIAIDGAVRDLSDAVTDGKIE 60
Query: 61 IITPEDPRSLAVIRHSCAHIMAEAVQSIWPEVQVAIGPIIEDGFYYDFDKEQPFSSDELA 120
IIT +D R+L +IRH AH+MAEAVQ +WP QV IGP+IE+GFYYDF K +PF+ D+L
Sbjct: 61 IITRKDGRALELIRHDAAHVMAEAVQELWPGTQVTIGPVIENGFYYDFAKNEPFTPDDLP 120
Query: 121 QIEKKMQEIIARDSPFLKQYLSHEKARELFESKKEAYKVEILESIPAKENVTLYRQGEWF 180
+IEKKM+EIIAR++PF KQ S EKA+E+F +K E YKVE++++IP +++ +Y QG+WF
Sbjct: 121 KIEKKMKEIIARNAPFTKQIWSREKAKEVFAAKGEQYKVELVDAIPEGQDLKIYHQGDWF 180
Query: 181 DLCRGPHVRSTGQVKKFFKLMKVAGAYWRGDSNRPMLSRIYGTAWNTQQELTQYLYFLEE 240
DLCRGPH+ STGQV FKLMKVAGAYWRGDSN MLSRIYGTAW Q +L YL+ L E
Sbjct: 181 DLCRGPHMASTGQVGTAFKLMKVAGAYWRGDSNNAMLSRIYGTAWADQADLDNYLHMLAE 240
Query: 241 SEKRDHRKLAREMDLFHIAEDGSGVIFWHRKGWKIFQTLISYMRRKIKDDYEEINTPQVL 300
+EKRDHRKL REMDLFH E+G GV+FWH KGW+IFQTL++YMRR++ DY+E+N PQVL
Sbjct: 241 AEKRDHRKLGREMDLFHFQEEGPGVVFWHGKGWRIFQTLVAYMRRRLAADYQEVNAPQVL 300
Query: 301 DQHLWQQSGHWDSYRANMFAVKCA------DDTIKDLRTFALKPMNCPGHVAVFNHGLKS 354
D LW+ SGHW Y+ NMFAVK A +D D R FALKPMNCPGHV +F HGLKS
Sbjct: 301 DTSLWETSGHWGWYQENMFAVKSAHAMTHPEDKEADNRVFALKPMNCPGHVQIFKHGLKS 360
Query: 355 YRELPVRLAEFGSVYRNEPSGSLHGLMRVRGFTQDDAHVFCTKEQMFNECLKIHNLIISI 414
YRELP+RLAEFG V+R EPSG+LHGLMRVRGFTQDDAH+FCT EQM ECLKI++LI+S+
Sbjct: 361 YRELPIRLAEFGLVHRYEPSGALHGLMRVRGFTQDDAHIFCTDEQMAAECLKINDLILSV 420
Query: 415 YKDFGFEKIMVKLSTRPEKRVGSDALWDDAENIMKGVLDTIKNSSQDRINTGVLLGEGAF 474
Y+DFGF++I+VKLSTRPEKRVGSDALWD AE +M VL TI+ S+ RI TG+L GEGAF
Sbjct: 421 YEDFGFKEIVVKLSTRPEKRVGSDALWDRAEAVMTDVLKTIEAQSEGRIKTGILPGEGAF 480
Query: 475 YGPKFEYILKDAIGRDWQCGTIQVDFNLPSRFNAFYVNSHSEKCHPVMIHRAVFGSIERF 534
YGPKFEY LKDAIGR+WQCGT QVDFNLP RF AFY++S+SEK PVMIHRA+ GS+ERF
Sbjct: 481 YGPKFEYTLKDAIGREWQCGTTQVDFNLPERFGAFYIDSNSEKTQPVMIHRAICGSMERF 540
Query: 535 IGIMIENFKGNLPLWLSPIQAIVTTITSSAVEYAQEIANLLKSHHLSIETDFRNETINYK 594
+GI+IENF G++PLW+SP+Q +V TITS A Y E+A L+ L++ETDFRNE INYK
Sbjct: 541 LGILIENFAGHMPLWVSPLQVVVATITSEADAYGLEVAEALRDAGLNVETDFRNEKINYK 600
Query: 595 IREHSIKKIPIIIICGDKEASERSIGIRRFGSTTTQKVSLLDAIPILTKESLPPDCQK 652
IREHS+ K+P+II+CG KEA ER++ IRR GS + L A+ LT E+ PPD ++
Sbjct: 601 IREHSVTKVPVIIVCGRKEAEERTVNIRRLGSQDQVSMGLDAAVESLTLEATPPDIRR 658
|
Species: Rhizobium etli Genus: Rhizobium Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|327188321|gb|EGE55539.1| threonyl-tRNA synthetase protein [Rhizobium etli CNPAF512] Length = 668 | Back alignment and organism information |
|---|
Score = 938 bits (2424), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 432/655 (65%), Positives = 524/655 (80%), Gaps = 6/655 (0%)
Query: 1 MPSDIKLTFPDGSIKNFPVHATGSDVAESISRSLAKKAVAVAINGKVCDLSDPVREGSIE 60
M I LTFPDGS+++FP ATG DVAESIS+SLAK AVA+AI+G V DLSD V +G IE
Sbjct: 1 MSQAISLTFPDGSVRSFPAGATGKDVAESISKSLAKSAVAIAIDGAVRDLSDAVTDGKIE 60
Query: 61 IITPEDPRSLAVIRHSCAHIMAEAVQSIWPEVQVAIGPIIEDGFYYDFDKEQPFSSDELA 120
IIT +D R+L +IRH AH+MAEAVQ +WP QV IGP+IE+GFYYDF K +PF+ D+L
Sbjct: 61 IITRKDGRALELIRHDAAHVMAEAVQELWPGTQVTIGPVIENGFYYDFAKNEPFTPDDLP 120
Query: 121 QIEKKMQEIIARDSPFLKQYLSHEKARELFESKKEAYKVEILESIPAKENVTLYRQGEWF 180
+IEKKM+EIIAR++PF KQ S EKA+E+F +K E YKVE++++IP +++ +Y QG+WF
Sbjct: 121 KIEKKMKEIIARNAPFTKQIWSREKAKEVFAAKGEQYKVELVDAIPEGQDLKIYHQGDWF 180
Query: 181 DLCRGPHVRSTGQVKKFFKLMKVAGAYWRGDSNRPMLSRIYGTAWNTQQELTQYLYFLEE 240
DLCRGPH+ STGQV FKLMKVAGAYWRGDSN MLSRIYGTAW Q +L YL+ L E
Sbjct: 181 DLCRGPHMASTGQVGTAFKLMKVAGAYWRGDSNNAMLSRIYGTAWADQADLDNYLHMLAE 240
Query: 241 SEKRDHRKLAREMDLFHIAEDGSGVIFWHRKGWKIFQTLISYMRRKIKDDYEEINTPQVL 300
+EKRDHRKL REMDLFH E+G GV+FWH KGW+IFQTL++YMRR++ DY+E+N PQVL
Sbjct: 241 AEKRDHRKLGREMDLFHFQEEGPGVVFWHGKGWRIFQTLVAYMRRRLAADYQEVNAPQVL 300
Query: 301 DQHLWQQSGHWDSYRANMFAVKCA------DDTIKDLRTFALKPMNCPGHVAVFNHGLKS 354
D LW+ SGHW Y+ NMFAVK A +D D R FALKPMNCPGHV +F HGLKS
Sbjct: 301 DTSLWETSGHWGWYQENMFAVKSAHAMTHPEDKEADNRVFALKPMNCPGHVQIFKHGLKS 360
Query: 355 YRELPVRLAEFGSVYRNEPSGSLHGLMRVRGFTQDDAHVFCTKEQMFNECLKIHNLIISI 414
YRELP+RLAEFG V+R EPSG+LHGLMRVRGFTQDDAH+FCT EQM ECLKI++LI+S+
Sbjct: 361 YRELPIRLAEFGLVHRYEPSGALHGLMRVRGFTQDDAHIFCTDEQMAAECLKINDLILSV 420
Query: 415 YKDFGFEKIMVKLSTRPEKRVGSDALWDDAENIMKGVLDTIKNSSQDRINTGVLLGEGAF 474
Y+DFGF++I+VKLSTRPEKRVGSDALWD AE +M VL TI+ S+ RI TG+L GEGAF
Sbjct: 421 YEDFGFKEIVVKLSTRPEKRVGSDALWDRAEAVMTDVLKTIEAQSEGRIKTGILPGEGAF 480
Query: 475 YGPKFEYILKDAIGRDWQCGTIQVDFNLPSRFNAFYVNSHSEKCHPVMIHRAVFGSIERF 534
YGPKFEY LKDAIGR+WQCGT QVDFNLP RF AFY++S+SEK PVMIHRA+ GS+ERF
Sbjct: 481 YGPKFEYTLKDAIGREWQCGTTQVDFNLPERFGAFYIDSNSEKTQPVMIHRAICGSMERF 540
Query: 535 IGIMIENFKGNLPLWLSPIQAIVTTITSSAVEYAQEIANLLKSHHLSIETDFRNETINYK 594
+GI+IENF G++PLW+SP+Q +V TITS A Y E+A L+ L++ETDFRNE INYK
Sbjct: 541 LGILIENFAGHMPLWVSPLQVVVATITSEADAYGLEVAEALRDAGLNVETDFRNEKINYK 600
Query: 595 IREHSIKKIPIIIICGDKEASERSIGIRRFGSTTTQKVSLLDAIPILTKESLPPD 649
IREHS+ K+P+II+CG KEA ER++ IRR GS + L A+ LT E+ PPD
Sbjct: 601 IREHSVTKVPVIIVCGRKEAEERTVNIRRLGSQDQVSMELDAAVESLTLEATPPD 655
|
Species: Rhizobium etli Genus: Rhizobium Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|222086050|ref|YP_002544582.1| threonyl-tRNA synthetase [Agrobacterium radiobacter K84] Length = 662 | Back alignment and organism information |
|---|
Score = 937 bits (2423), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 424/650 (65%), Positives = 522/650 (80%)
Query: 1 MPSDIKLTFPDGSIKNFPVHATGSDVAESISRSLAKKAVAVAINGKVCDLSDPVREGSIE 60
M + LTFPDGS++++ ATG DVAESIS+SLAKKAVA+AI+G V DLS+PV +G IE
Sbjct: 1 MSQSVSLTFPDGSVRSYDAGATGRDVAESISKSLAKKAVAIAIDGTVRDLSEPVADGKIE 60
Query: 61 IITPEDPRSLAVIRHSCAHIMAEAVQSIWPEVQVAIGPIIEDGFYYDFDKEQPFSSDELA 120
IIT D R+L +IRH AH+MAEAVQ +WP QV IGP+IE+GFYYDF K +PF+ D+L
Sbjct: 61 IITRNDDRALELIRHDAAHVMAEAVQELWPGTQVTIGPVIENGFYYDFAKNEPFTPDDLP 120
Query: 121 QIEKKMQEIIARDSPFLKQYLSHEKARELFESKKEAYKVEILESIPAKENVTLYRQGEWF 180
IEKKM+EII R+ PF +Q S EKA+++F K E YKVE++++IP +++ +Y QG+WF
Sbjct: 121 VIEKKMREIIQRNKPFTRQIWSREKAKQVFADKGERYKVELVDAIPEGQDLKIYYQGDWF 180
Query: 181 DLCRGPHVRSTGQVKKFFKLMKVAGAYWRGDSNRPMLSRIYGTAWNTQQELTQYLYFLEE 240
DLCRGPH+ STGQ+ FKLMKVAGAYWRGDSN PML+RIYGTA+ Q +L YL+ L E
Sbjct: 181 DLCRGPHMASTGQIGTAFKLMKVAGAYWRGDSNNPMLTRIYGTAFAEQADLDNYLHILAE 240
Query: 241 SEKRDHRKLAREMDLFHIAEDGSGVIFWHRKGWKIFQTLISYMRRKIKDDYEEINTPQVL 300
+EKRDHR+L REMDLFH E+G GV+FWH KGW+IFQTL+SYMRR+++ DY+E+N PQVL
Sbjct: 241 AEKRDHRRLGREMDLFHFQEEGPGVVFWHGKGWRIFQTLVSYMRRRLEGDYQEVNAPQVL 300
Query: 301 DQHLWQQSGHWDSYRANMFAVKCADDTIKDLRTFALKPMNCPGHVAVFNHGLKSYRELPV 360
D+ LW+ SGHW YR NMF V A D D R FALKPMNCPGH+ +F HGLKSYRELP+
Sbjct: 301 DKSLWETSGHWGWYRDNMFKVTVAGDDTDDDRVFALKPMNCPGHIQIFKHGLKSYRELPI 360
Query: 361 RLAEFGSVYRNEPSGSLHGLMRVRGFTQDDAHVFCTKEQMFNECLKIHNLIISIYKDFGF 420
RLAEFG+V+R EPSG+LHGLMRVRGFTQDDAH+FCT EQM ECLKI++LI+S+Y+DFGF
Sbjct: 361 RLAEFGNVHRYEPSGALHGLMRVRGFTQDDAHIFCTDEQMAAECLKINDLILSVYEDFGF 420
Query: 421 EKIMVKLSTRPEKRVGSDALWDDAENIMKGVLDTIKNSSQDRINTGVLLGEGAFYGPKFE 480
E+++VKLSTRPEKRVG DALWD AE++M VL TI+ S RI TG+L GEGAFYGPKFE
Sbjct: 421 EEVVVKLSTRPEKRVGDDALWDRAESVMMEVLKTIEAQSGGRIKTGILPGEGAFYGPKFE 480
Query: 481 YILKDAIGRDWQCGTIQVDFNLPSRFNAFYVNSHSEKCHPVMIHRAVFGSIERFIGIMIE 540
Y LKDAIGR+WQCGT QVDFNLP RF AFY++ HSEK PVMIHRA+ GS+ERF+GI+IE
Sbjct: 481 YTLKDAIGREWQCGTTQVDFNLPERFGAFYIDQHSEKTQPVMIHRAICGSMERFLGILIE 540
Query: 541 NFKGNLPLWLSPIQAIVTTITSSAVEYAQEIANLLKSHHLSIETDFRNETINYKIREHSI 600
NF G++PLW+SP+Q +V TITS A Y +E+A L+ L++ETDFRNE INYKIREHS+
Sbjct: 541 NFAGHMPLWVSPLQVVVATITSEADGYGEEVAEALRDAGLTVETDFRNEKINYKIREHSV 600
Query: 601 KKIPIIIICGDKEASERSIGIRRFGSTTTQKVSLLDAIPILTKESLPPDC 650
K+P+II+CG KEA ERS+ IRR GS +SL +AI L+ E+ PPD
Sbjct: 601 TKVPVIIVCGKKEAEERSVNIRRLGSQAQTAMSLDEAIASLSLEATPPDV 650
|
Species: Agrobacterium tumefaciens Genus: Agrobacterium Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|307309192|ref|ZP_07588863.1| threonyl-tRNA synthetase [Sinorhizobium meliloti BL225C] Length = 660 | Back alignment and organism information |
|---|
Score = 937 bits (2422), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 418/652 (64%), Positives = 529/652 (81%)
Query: 1 MPSDIKLTFPDGSIKNFPVHATGSDVAESISRSLAKKAVAVAINGKVCDLSDPVREGSIE 60
M + LTFPDGS++ F TG DVAESIS+SLAKKAVA+AI+G++ DLSD V EG IE
Sbjct: 1 MSHSVSLTFPDGSVREFAAGTTGRDVAESISKSLAKKAVAIAISGELRDLSDAVTEGRIE 60
Query: 61 IITPEDPRSLAVIRHSCAHIMAEAVQSIWPEVQVAIGPIIEDGFYYDFDKEQPFSSDELA 120
I+T ED R+L +IRH AH+MAEAVQ +WP QV IGP+I++GFYYDF K +PF+ D+L
Sbjct: 61 IVTREDKRALELIRHDAAHVMAEAVQELWPGTQVTIGPVIDNGFYYDFAKNEPFTPDDLP 120
Query: 121 QIEKKMQEIIARDSPFLKQYLSHEKARELFESKKEAYKVEILESIPAKENVTLYRQGEWF 180
IEKKM+EIIAR+ PF K+ S ++A+E+F +K E YKVE++++IP +++ +Y QG+WF
Sbjct: 121 VIEKKMREIIARNKPFTKEVWSRDRAKEVFAAKGENYKVELVDAIPEGQDLKIYYQGDWF 180
Query: 181 DLCRGPHVRSTGQVKKFFKLMKVAGAYWRGDSNRPMLSRIYGTAWNTQQELTQYLYFLEE 240
DLCRGPH+ STGQ+ FKLMKVAGAYWRGDSN ML+RIYGTAW+TQ+EL QYL+ L E
Sbjct: 181 DLCRGPHMASTGQIGTAFKLMKVAGAYWRGDSNNTMLTRIYGTAWHTQEELDQYLHVLAE 240
Query: 241 SEKRDHRKLAREMDLFHIAEDGSGVIFWHRKGWKIFQTLISYMRRKIKDDYEEINTPQVL 300
+EKRDHR+L REMDLFH E+G GV+FWH KGW+IFQ+L++YMRR+++ DY+E+N PQVL
Sbjct: 241 AEKRDHRRLGREMDLFHFQEEGPGVVFWHGKGWRIFQSLVAYMRRRLEGDYQEVNAPQVL 300
Query: 301 DQHLWQQSGHWDSYRANMFAVKCADDTIKDLRTFALKPMNCPGHVAVFNHGLKSYRELPV 360
D+ LW+ SGHW YR NMF V A D D R FALKPMNCPGH+ +F HGLKSYRELPV
Sbjct: 301 DKSLWETSGHWGWYRDNMFKVTVAGDDTDDDRVFALKPMNCPGHIQIFKHGLKSYRELPV 360
Query: 361 RLAEFGSVYRNEPSGSLHGLMRVRGFTQDDAHVFCTKEQMFNECLKIHNLIISIYKDFGF 420
RLAEFG+V+R EPSG+LHGLMRVRGFTQDDAH+FCT EQM ECLKI++LI+S+Y+DFGF
Sbjct: 361 RLAEFGAVHRYEPSGALHGLMRVRGFTQDDAHIFCTDEQMAAECLKINDLILSVYEDFGF 420
Query: 421 EKIMVKLSTRPEKRVGSDALWDDAENIMKGVLDTIKNSSQDRINTGVLLGEGAFYGPKFE 480
++I+VKLSTRPEKRVGSD LWD AE +M VL TI+ S+ RI TG+L GEGAFYGPKFE
Sbjct: 421 KEIVVKLSTRPEKRVGSDELWDRAEAVMTEVLQTIEEQSEGRIKTGILPGEGAFYGPKFE 480
Query: 481 YILKDAIGRDWQCGTIQVDFNLPSRFNAFYVNSHSEKCHPVMIHRAVFGSIERFIGIMIE 540
Y LKDAIGR+WQCGT QVDFNLP RF AFY++S SEK PVMIHRA+ GS+ERF+GI++E
Sbjct: 481 YTLKDAIGREWQCGTTQVDFNLPERFGAFYIDSESEKRQPVMIHRAICGSMERFLGILLE 540
Query: 541 NFKGNLPLWLSPIQAIVTTITSSAVEYAQEIANLLKSHHLSIETDFRNETINYKIREHSI 600
N+ G++PLW+SP+Q +V TITS A +Y +E+A L+ L++ETDFRNE INYK+REHS+
Sbjct: 541 NYAGHMPLWISPLQVVVATITSEADDYGREVAERLRDAGLTVETDFRNEKINYKVREHSV 600
Query: 601 KKIPIIIICGDKEASERSIGIRRFGSTTTQKVSLLDAIPILTKESLPPDCQK 652
K+P+I++CG +EA ERS+ IRR GS +SL +A+ L+ E++ PD ++
Sbjct: 601 TKVPVIVVCGRREAEERSVNIRRLGSQAQTAMSLDEAVASLSAEAMAPDLKR 652
|
Species: Sinorhizobium meliloti Genus: Sinorhizobium Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
Conserved Domains in CDD Database
Detected by RPS-BLAST and HHsearch
Conserved Domains in CDD Database Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
Original result of RPS-BLASTagainst CDD database part II
| Identity | Alignment graph | Length | Definition | E-value |
| Target | 652 | threonyl-tRNA synthetase [Candidatus Liberibacter asiat | ||
| PRK00413 | 638 | PRK00413, thrS, threonyl-tRNA synthetase; Reviewed | 0.0 | |
| PRK12444 | 639 | PRK12444, PRK12444, threonyl-tRNA synthetase; Reviewed | 0.0 | |
| PLN02908 | 686 | PLN02908, PLN02908, threonyl-tRNA synthetase | 1e-145 | |
| PRK12305 | 575 | PRK12305, thrS, threonyl-tRNA synthetase; Reviewed | 0.0 | |
| TIGR00418 | 563 | TIGR00418, thrS, threonyl-tRNA synthetase | 0.0 | |
| PLN02837 | 614 | PLN02837, PLN02837, threonine-tRNA ligase | 1e-164 | |
| COG0441 | 589 | COG0441, ThrS, Threonyl-tRNA synthetase [Translation, r | 0.0 | |
| cd00771 | 298 | cd00771, ThrRS_core, Threonyl-tRNA synthetase (ThrRS) c | 1e-116 | |
| cd00670 | 235 | cd00670, Gly_His_Pro_Ser_Thr_tRS_core, Gly_His_Pro_Ser_ | 2e-32 | |
| cd00778 | 261 | cd00778, ProRS_core_arch_euk, Prolyl-tRNA synthetase (P | 6e-08 | |
| KOG1637 | 560 | KOG1637, KOG1637, KOG1637, Threonyl-tRNA synthetase [Tr | 1e-105 | |
| PRK14799 | 545 | PRK14799, thrS, threonyl-tRNA synthetase; Provisional | 2e-99 | |
| pfam00587 | 170 | pfam00587, tRNA-synt_2b, tRNA synthetase class II core | 3e-37 | |
| TIGR00409 | 568 | TIGR00409, proS_fam_II, prolyl-tRNA synthetase, family | 2e-11 | |
| cd00772 | 264 | cd00772, ProRS_core, Prolyl-tRNA synthetase (ProRS) cla | 9e-08 | |
| cd00773 | 261 | cd00773, HisRS-like_core, Class II Histidinyl-tRNA synt | 4e-04 | |
| PRK12325 | 439 | PRK12325, PRK12325, prolyl-tRNA synthetase; Provisional | 0.002 | |
| PRK03991 | 613 | PRK03991, PRK03991, threonyl-tRNA synthetase; Validated | 5e-35 | |
| PRK08661 | 477 | PRK08661, PRK08661, prolyl-tRNA synthetase; Provisional | 1e-07 | |
| KOG4163 | 551 | KOG4163, KOG4163, KOG4163, Prolyl-tRNA synthetase [Tran | 0.003 | |
| cd00860 | 91 | cd00860, ThrRS_anticodon, ThrRS Threonyl-anticodon bind | 9e-20 | |
| pfam03129 | 93 | pfam03129, HGTP_anticodon, Anticodon binding domain | 8e-12 | |
| cd00738 | 94 | cd00738, HGTP_anticodon, HGTP anticodon binding domain, | 3e-07 | |
| PRK14938 | 387 | PRK14938, PRK14938, Ser-tRNA(Thr) hydrolase; Provisiona | 3e-06 | |
| TIGR00442 | 397 | TIGR00442, hisS, histidyl-tRNA synthetase | 1e-05 | |
| PRK00037 | 412 | PRK00037, hisS, histidyl-tRNA synthetase; Reviewed | 0.004 | |
| COG0442 | 500 | COG0442, ProS, Prolyl-tRNA synthetase [Translation, rib | 3e-17 | |
| TIGR00408 | 472 | TIGR00408, proS_fam_I, prolyl-tRNA synthetase, family I | 6e-12 | |
| COG0124 | 429 | COG0124, HisS, Histidyl-tRNA synthetase [Translation, r | 3e-07 | |
| cd01667 | 61 | cd01667, TGS_ThrRS_N, TGS _ThrRS_N: ThrRS (threonyl-tRN | 1e-15 | |
| pfam02824 | 60 | pfam02824, TGS, TGS domain | 3e-08 | |
| cd01668 | 60 | cd01668, TGS_RelA_SpoT, TGS_RelA_SpoT: The RelA (SpoT) | 3e-04 | |
| cd00768 | 211 | cd00768, class_II_aaRS-like_core, Class II tRNA amino-a | 1e-14 | |
| KOG1637 | 560 | KOG1637, KOG1637, KOG1637, Threonyl-tRNA synthetase [Tr | 5e-14 | |
| cd00779 | 255 | cd00779, ProRS_core_prok, Prolyl-tRNA synthetase (ProRS | 4e-12 | |
| cd00770 | 297 | cd00770, SerRS_core, Seryl-tRNA synthetase (SerRS) clas | 1e-05 | |
| COG0172 | 429 | COG0172, SerS, Seryl-tRNA synthetase [Translation, ribo | 3e-05 | |
| smart00863 | 44 | smart00863, tRNA_SAD, Threonyl and Alanyl tRNA syntheta | 2e-10 | |
| pfam07973 | 44 | pfam07973, tRNA_SAD, Threonyl and Alanyl tRNA synthetas | 9e-10 | |
| KOG2324 | 457 | KOG2324, KOG2324, KOG2324, Prolyl-tRNA synthetase [Tran | 4e-09 | |
| PRK01584 | 594 | PRK01584, PRK01584, alanyl-tRNA synthetase; Provisional | 5e-07 | |
| COG2872 | 241 | COG2872, COG2872, Predicted metal-dependent hydrolases | 1e-05 | |
| COG0013 | 879 | COG0013, AlaS, Alanyl-tRNA synthetase [Translation, rib | 2e-05 | |
| KOG0188 | 895 | KOG0188, KOG0188, KOG0188, Alanyl-tRNA synthetase [Tran | 3e-05 | |
| PRK09194 | 565 | PRK09194, PRK09194, prolyl-tRNA synthetase; Provisional | 4e-06 | |
| PRK00252 | 865 | PRK00252, alaS, alanyl-tRNA synthetase; Reviewed | 0.001 |
| >gnl|CDD|179011 PRK00413, thrS, threonyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 1085 bits (2808), Expect = 0.0
Identities = 350/647 (54%), Positives = 466/647 (72%), Gaps = 14/647 (2%)
Query: 5 IKLTFPDGSIKNFPVHATGSDVAESISRSLAKKAVAVAINGKVCDLSDPVRE-GSIEIIT 63
IK+T PDGS++ F T +DVA SIS LAK AVA +NG++ DLS P+ E S+EIIT
Sbjct: 2 IKITLPDGSVREFEAGVTVADVAASISPGLAKAAVAGKVNGELVDLSTPIEEDASLEIIT 61
Query: 64 PEDPRSLAVIRHSCAHIMAEAVQSIWPEVQVAIGPIIEDGFYYDFDKEQPFSSDELAQIE 123
+D L +IRHS AH++A+AV+ ++P+ ++ IGP+IE+GFYYDFD+E+PF+ ++L IE
Sbjct: 62 AKDEEGLEIIRHSAAHLLAQAVKRLYPDAKLTIGPVIENGFYYDFDRERPFTPEDLEAIE 121
Query: 124 KKMQEIIARDSPFLKQYLSHEKARELFESKKEAYKVEILESIPAKENVTLYRQGEWFDLC 183
K+M+EII + P ++ +S E+A ELF+ + E YKVE++E IP E ++LYRQGE+ DLC
Sbjct: 122 KEMKEIIKENYPIEREVVSREEAIELFKDRGEPYKVELIEEIPEDEEISLYRQGEFVDLC 181
Query: 184 RGPHVRSTGQVKKFFKLMKVAGAYWRGDSNRPMLSRIYGTAWNTQQELTQYLYFLEESEK 243
RGPHV STG++K FKL+KVAGAYWRGDS ML RIYGTA+ ++EL YL+ LEE++K
Sbjct: 182 RGPHVPSTGKIK-AFKLLKVAGAYWRGDSKNKMLQRIYGTAFADKKELDAYLHRLEEAKK 240
Query: 244 RDHRKLAREMDLFHIAEDGSGVIFWHRKGWKIFQTLISYMRRK-IKDDYEEINTPQVLDQ 302
RDHRKL +E+DLFH E+ G+ FWH KGW I + L Y+RRK K Y+E+ TPQ+LD+
Sbjct: 241 RDHRKLGKELDLFHFQEEAPGLPFWHPKGWTIRRELERYIRRKLRKAGYQEVKTPQILDR 300
Query: 303 HLWQQSGHWDSYRANMFAVKCADDTIKDLRTFALKPMNCPGHVAVFNHGLKSYRELPVRL 362
LW+ SGHWD YR NMF +D +ALKPMNCPGHV ++ GL+SYR+LP+RL
Sbjct: 301 ELWETSGHWDHYRENMFPTTESDG-----EEYALKPMNCPGHVQIYKQGLRSYRDLPLRL 355
Query: 363 AEFGSVYRNEPSGSLHGLMRVRGFTQDDAHVFCTKEQMFNECLKIHNLIISIYKDFGFEK 422
AEFG+V+R EPSG+LHGLMRVRGFTQDDAH+FCT EQ+ E K+ +LI+ +YKDFGFE
Sbjct: 356 AEFGTVHRYEPSGALHGLMRVRGFTQDDAHIFCTPEQIEEEVKKVIDLILDVYKDFGFED 415
Query: 423 IMVKLSTRPEKRVGSDALWDDAENIMKGVLDTIKNSSQDRINTGVLLGEGAFYGPKFEYI 482
VKLSTRPEKR+GSD +WD AE +K LD + ++ + GEGAFYGPK ++
Sbjct: 416 YEVKLSTRPEKRIGSDEMWDKAEAALKEALDELG------LDYEIAPGEGAFYGPKIDFQ 469
Query: 483 LKDAIGRDWQCGTIQVDFNLPSRFNAFYVNSHSEKCHPVMIHRAVFGSIERFIGIMIENF 542
LKDA+GR+WQCGTIQ+DFNLP RF+ YV EK PVMIHRA+ GS+ERFIGI+IE++
Sbjct: 470 LKDALGREWQCGTIQLDFNLPERFDLTYVGEDGEKHRPVMIHRAILGSMERFIGILIEHY 529
Query: 543 KGNLPLWLSPIQAIVTTITSSAVEYAQEIANLLKSHHLSIETDFRNETINYKIREHSIKK 602
G P WL+P+Q +V IT +YA+E+A LK+ + +E D RNE I YKIRE ++K
Sbjct: 530 AGAFPTWLAPVQVVVLPITDKHADYAKEVAKKLKAAGIRVEVDLRNEKIGYKIREAQLQK 589
Query: 603 IPIIIICGDKEASERSIGIRRFGSTTTQKVSLLDAIPILTKESLPPD 649
+P +++ GDKE ++ +RR G +SL + I L +E
Sbjct: 590 VPYMLVVGDKEVEAGTVSVRRRGGKDLGTMSLDEFIERLLEEIASRS 636
|
Length = 638 |
| >gnl|CDD|183530 PRK12444, PRK12444, threonyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 688 bits (1778), Expect = 0.0
Identities = 285/643 (44%), Positives = 440/643 (68%), Gaps = 17/643 (2%)
Query: 5 IKLTFPDGSIKNFPVHATGSDVAESISRSLAKKAVAVAINGKVCDLSDPVREGS-IEIIT 63
I++ FPDGS+K F T ++A SIS SL KKAVA +N K+ DL + E + +EIIT
Sbjct: 6 IEIKFPDGSVKEFVKGITLEEIAGSISSSLKKKAVAGKVNDKLYDLRRNLEEDAEVEIIT 65
Query: 64 PEDPRSLAVIRHSCAHIMAEAVQSIWPEVQVAIGPIIEDGFYYDFDKEQPFSSDELAQIE 123
+ + + RHS AHI+A+AV+ ++ +V + +GP+IE+GFYYD D + ++L +IE
Sbjct: 66 IDSNEGVEIARHSAAHILAQAVKRLYGDVNLGVGPVIENGFYYDMDLPSSVNVEDLRKIE 125
Query: 124 KKMQEIIARDSPFLKQYLSHEKARELFESKKEAYKVEILESIPAKENVTLYRQGEWFDLC 183
K+M++II + + +S E+A +LF+ + K+E+LE+IP+ E++TLY+QGE+ DLC
Sbjct: 126 KEMKKIINENIKIERVEVSREEAAKLFQEMNDRLKLELLEAIPSGESITLYKQGEFVDLC 185
Query: 184 RGPHVRSTGQVKKFFKLMKVAGAYWRGDSNRPMLSRIYGTAWNTQQELTQYLYFLEESEK 243
RGPH+ STG +K F+L V+GAYWRGDSN +L RIYG A+++Q+EL +YL+F+EE+ K
Sbjct: 186 RGPHLPSTGYLKA-FQLTHVSGAYWRGDSNNQVLQRIYGVAFSSQKELEEYLHFVEEAAK 244
Query: 244 RDHRKLAREMDLFHIAEDGSGVIFWHRKGWKIFQTLISYMRR-KIKDDYEEINTPQVLDQ 302
R+HRKL +E++LF +E+ G+ F+ KG I L +++R + + +Y+E+ TP +++Q
Sbjct: 245 RNHRKLGKELELFMFSEEAPGMPFYLPKGQIIRNELEAFLREIQKEYNYQEVRTPFMMNQ 304
Query: 303 HLWQQSGHWDSYRANMFAVKCADDTIKDLRTFALKPMNCPGHVAVFNHGLKSYRELPVRL 362
LW++SGHWD Y+ NM+ + D+ +FALKPMNCPGH+ +F + L SYRELP+R+
Sbjct: 305 ELWERSGHWDHYKDNMYFSE-VDNK-----SFALKPMNCPGHMLMFKNKLHSYRELPIRM 358
Query: 363 AEFGSVYRNEPSGSLHGLMRVRGFTQDDAHVFCTKEQMFNECLKIHNLIISIYKDFGFEK 422
EFG V+R+E SG+L+GL+RVR F QDDAH+F T +Q+ +E + I +YK FGFE
Sbjct: 359 CEFGQVHRHEFSGALNGLLRVRTFCQDDAHLFVTPDQIEDEIKSVMAQIDYVYKTFGFE- 417
Query: 423 IMVKLSTRPEKRVGSDALWDDAENIMKGVLDTIKNSSQDRINTGVLLGEGAFYGPKFEYI 482
V+LSTRPE +G D LW+ AE ++ VL ++ R+N G+GAFYGPK ++
Sbjct: 418 YEVELSTRPEDSMGDDELWEQAEASLENVLQSLNYKY--RLNE----GDGAFYGPKIDFH 471
Query: 483 LKDAIGRDWQCGTIQVDFNLPSRFNAFYVNSHSEKCHPVMIHRAVFGSIERFIGIMIENF 542
+KDA+ R QCGTIQ+DF +P +F+ Y++ +EK PV+IHRAV GS++RF+ I+IE+F
Sbjct: 472 IKDALNRSHQCGTIQLDFQMPEKFDLNYIDEKNEKRRPVVIHRAVLGSLDRFLAILIEHF 531
Query: 543 KGNLPLWLSPIQAIVTTITSSA-VEYAQEIANLLKSHHLSIETDFRNETINYKIREHSIK 601
G P WL+P+Q V ++++ V+YA E+A+ L + +E D R+E + YKIRE ++
Sbjct: 532 GGAFPAWLAPVQVKVIPVSNAVHVQYADEVADKLAQAGIRVERDERDEKLGYKIREAQMQ 591
Query: 602 KIPIIIICGDKEASERSIGIRRFGSTTTQKVSLLDAIPILTKE 644
KIP +++ GDKE ++ +R++G ++ + L + + +E
Sbjct: 592 KIPYVLVIGDKEMENGAVNVRKYGEEKSEVIELDMFVESIKEE 634
|
Length = 639 |
| >gnl|CDD|178496 PLN02908, PLN02908, threonyl-tRNA synthetase | Back alignment and domain information |
|---|
Score = 509 bits (1313), Expect = e-145
Identities = 234/629 (37%), Positives = 370/629 (58%), Gaps = 26/629 (4%)
Query: 2 PSDIKLTFPDGSIKNFPVHATGS-DVAESISRSLAKKAVAVAINGKVCDLSDPVREG--S 58
IK+T PDG++K+ T D+A+ IS+ LA A+ ++G + D++ P+ EG
Sbjct: 49 GDPIKVTLPDGAVKDGKKWVTTPMDIAKEISKGLANSALIAQVDGVLWDMTRPL-EGDCK 107
Query: 59 IEIITPEDPRSLAVIRHSCAHIMAEAVQSIWPEVQVAIGPIIE--DGFYYD-FDKEQPFS 115
+++ +D HS AHI+ EA++ + ++ IGP +GFYYD F ++ +
Sbjct: 108 LKLFKFDDDEGRDTFWHSSAHILGEALELEY-GCKLCIGPCTTRGEGFYYDAFYGDRTLN 166
Query: 116 SDELAQIEKKMQEIIARDSPFLKQYLSHEKARELFESKKEAYKVEILESIPAKENVTLYR 175
++ IE + ++ + PF + ++ E+A E+F K +KVEI+ +P +T+YR
Sbjct: 167 EEDFKPIEARAEKAVKEKQPFERIEVTREEALEMFSENK--FKVEIINDLPEDATITVYR 224
Query: 176 QGEWFDLCRGPHVRSTGQVKKFFKLMKVAGAYWRGDSNRPMLSRIYGTAWNTQQELTQYL 235
G DLCRGPH+ +T VK F +K + AYWRGD +R L R+YG ++ ++ L +Y
Sbjct: 225 CGPLVDLCRGPHIPNTSFVKAF-ACLKASSAYWRGDVDRESLQRVYGISFPDKKLLKEYK 283
Query: 236 YFLEESEKRDHRKLAREMDLFHIAEDGSGVIFWHRKGWKIFQTLISYMRRKI-KDDYEEI 294
+ +EE++KRDHR L ++ +LF E G F+ G +I+ L+ ++R + + Y+E+
Sbjct: 284 HRIEEAKKRDHRLLGQKQELFFFHELSPGSCFFLPHGARIYNKLMDFIREQYWERGYDEV 343
Query: 295 NTPQVLDQHLWQQSGHWDSYRANMFAVKCADDTIKDLRTFALKPMNCPGHVAVFNHGLKS 354
TP + + LW+ SGH Y+ NMF + + + F LKPMNCPGH +F H ++S
Sbjct: 344 ITPNIYNMDLWETSGHAAHYKENMFVFEI------EKQEFGLKPMNCPGHCLMFAHRVRS 397
Query: 355 YRELPVRLAEFGSVYRNEPSGSLHGLMRVRGFTQDDAHVFCTKEQMFNECLKIHNLIISI 414
YRELP+RLA+FG ++RNE SG+L GL RVR F QDDAH+FC ++Q+ +E + + + +
Sbjct: 398 YRELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCREDQIKDEVKGVLDFLDYV 457
Query: 415 YKDFGFEKIMVKLSTRPEKRVGSDALWDDAENIMKGVLDTIKNSSQDRINTGVLLGEGAF 474
Y+ FGF + KLSTRPEK +G WD AE + L+ Q +N G+GAF
Sbjct: 458 YEVFGFTYEL-KLSTRPEKYLGDLETWDKAEAALTEALNAFGKPWQ--LNE----GDGAF 510
Query: 475 YGPKFEYILKDAIGRDWQCGTIQVDFNLPSRFNAFYV-NSHSEKCHPVMIHRAVFGSIER 533
YGPK + + DA+ R +QC T+Q+DF LP RF Y ++ PVMIHRA+ GS+ER
Sbjct: 511 YGPKIDITVSDALKRKFQCATVQLDFQLPIRFKLSYSAEDEAKIERPVMIHRAILGSVER 570
Query: 534 FIGIMIENFKGNLPLWLSPIQAIVTTITSSAVEYAQEIANLLKSHHLSIETDFRNETINY 593
I++E++ G P WLSP QAIV I+ + +YA+E+ L + ++ D + I
Sbjct: 571 MFAILLEHYAGKWPFWLSPRQAIVVPISEKSQDYAEEVRAQLHAAGFYVDVDVTDRKIQK 630
Query: 594 KIREHSIKKIPIIIICGDKEASERSIGIR 622
K+RE + + I++ G+ EA+ ++ +R
Sbjct: 631 KVREAQLAQYNYILVVGEAEAATGTVNVR 659
|
Length = 686 |
| >gnl|CDD|183422 PRK12305, thrS, threonyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 839 bits (2171), Expect = 0.0
Identities = 271/584 (46%), Positives = 390/584 (66%), Gaps = 20/584 (3%)
Query: 65 EDPRSLAVIRHSCAHIMAEAVQSIWPEVQVAIGPIIEDGFYYDFDKEQPFSSDELAQIEK 124
+ P L VIRHS AH++A+AVQ ++P+ ++ IGP IEDGFYYDFD +PF+ ++L +IEK
Sbjct: 1 DSPDGLEVIRHSAAHVLAQAVQELFPDAKLGIGPPIEDGFYYDFDVPEPFTPEDLKKIEK 60
Query: 125 KMQEIIARDSPFLKQYLSHEKARELFESKKEAYKVEILESIPAKENVTLYRQGEWFDLCR 184
KM++II R PF ++ +S E+ARE F E YK+E+++ IP +E +T+Y G++ DLCR
Sbjct: 61 KMKKIIKRGLPFEREEVSREEAREEF--ANEPYKLELIDDIP-EEGITIYDNGDFEDLCR 117
Query: 185 GPHVRSTGQVKKFFKLMKVAGAYWRGDSNRPMLSRIYGTAWNTQQELTQYLYFLEESEKR 244
GPHV +T +K FKL VAGAYWRGD P L RIYGTAW T++EL +YL LEE++KR
Sbjct: 118 GPHVPNTKFIK-AFKLTSVAGAYWRGDEKNPQLQRIYGTAWETKEELKEYLKRLEEAKKR 176
Query: 245 DHRKLAREMDLFHIAED-GSGVIFWHRKGWKIFQTLISYMRRK-IKDDYEEINTPQVLDQ 302
DHRKL +E+DLF ++ G G+ WH KG I + + Y+R++ +K YE + TP +
Sbjct: 177 DHRKLGKELDLFSFPDEIGPGLPVWHPKGAIIRREIEDYLRKEHLKRGYEFVYTPHIGKS 236
Query: 303 HLWQQSGHWDSYRANMFAVKCADDTIK-DLRTFALKPMNCPGHVAVFNHGLKSYRELPVR 361
LW+ SGH D+Y+ NMF ++ D + LKPMNCPGH+ ++ L+SYR+LP+R
Sbjct: 237 DLWKTSGHLDNYKENMF------PPMEIDEEEYYLKPMNCPGHILIYKSRLRSYRDLPLR 290
Query: 362 LAEFGSVYRNEPSGSLHGLMRVRGFTQDDAHVFCTKEQMFNECLKIHNLIISIYKDFGFE 421
LAEFG+VYR E SG LHGL RVRGFTQDDAH+FCT +Q+ +E LK+ + ++ + KDFGF+
Sbjct: 291 LAEFGTVYRYEKSGVLHGLTRVRGFTQDDAHIFCTPDQIEDEILKVLDFVLELLKDFGFK 350
Query: 422 KIMVKLSTR-PEKRVGSDALWDDAENIMKGVLDTIKNSSQDRINTGVLLGEGAFYGPKFE 480
++LSTR PEK VG D +W+ A ++ L+ + + G AFYGPK +
Sbjct: 351 DYYLELSTREPEKYVGDDEVWEKATEALREALEELG------LEYVEDPGGAAFYGPKID 404
Query: 481 YILKDAIGRDWQCGTIQVDFNLPSRFNAFYVNSHSEKCHPVMIHRAVFGSIERFIGIMIE 540
+KDA+GR+WQ TIQ+DFNLP RF+ Y ++ PVMIHRA+FGSIERFIGI+ E
Sbjct: 405 VQIKDALGREWQMSTIQLDFNLPERFDLEYTAEDGKRQRPVMIHRALFGSIERFIGILTE 464
Query: 541 NFKGNLPLWLSPIQAIVTTITSSAVEYAQEIANLLKSHHLSIETDFRNETINYKIREHSI 600
++ G P WL+P+Q ++ + + EYA+E+A L++ + +E D NE +N KIR
Sbjct: 465 HYAGAFPFWLAPVQVVIIPVADAHNEYAEEVAKKLRAAGIRVEVDTSNERLNKKIRNAQK 524
Query: 601 KKIPIIIICGDKEASERSIGIRRFGSTTTQKVSLLDAIPILTKE 644
+KIP +++ GDKE ++ +R + L + I ++ ++
Sbjct: 525 QKIPYMLVVGDKEVEAGTVSVRTRDGEQLNGMPLDEFIELIKEK 568
|
Length = 575 |
| >gnl|CDD|161870 TIGR00418, thrS, threonyl-tRNA synthetase | Back alignment and domain information |
|---|
Score = 655 bits (1691), Expect = 0.0
Identities = 269/575 (46%), Positives = 377/575 (65%), Gaps = 17/575 (2%)
Query: 74 RHSCAHIMAEAVQSIWPEVQVAIGPIIEDGFYYDFDKEQPFSSDELAQIEKKMQEIIARD 133
RHS AH++AEA++ ++P+V++AIGP++EDGFYYDF+ ++ F+ ++L +IEK M+EI ++
Sbjct: 1 RHSIAHLLAEALKQLYPDVKLAIGPVVEDGFYYDFELDRSFTQEDLEKIEKDMKEIAKKN 60
Query: 134 SPFLKQYLSHEKARELFESKKEAYKVEILESIPAKENVTLYRQGE-WFDLCRGPHVRSTG 192
P K +S E+A E F+ E YK+E+L+ IP T Y G+ + DLC+GPH+ +T
Sbjct: 61 YPVAKLSVSLEEALEAFK-VLEPYKLELLDEIPNGVKRTPYGWGKAFVDLCKGPHLPNTS 119
Query: 193 QVKKFFKLMKVAGAYWRGDSNRPMLSRIYGTAWNTQQELTQYLYFLEESEKRDHRKLARE 252
+K F KL KVAGAYWRGDS ML RIYGTAW +++L YL LEE++KRDHRKL +E
Sbjct: 120 FIKAF-KLEKVAGAYWRGDSKNKMLQRIYGTAWADKKQLAAYLLRLEEAKKRDHRKLGKE 178
Query: 253 MDLFHIA-EDGSGVIFWHRKGWKIFQTLISYMRRK-IKDDYEEINTPQVLDQHLWQQSGH 310
++LF E G G+ FW KG I L ++R+K IK Y E+ TP + D LW+ SGH
Sbjct: 179 LELFSFEPEIGPGLPFWLPKGATIRNLLEDFVRQKQIKYGYMEVETPIMYDLELWEISGH 238
Query: 311 WDSYRANMFAVKCADDTIKDLRTFALKPMNCPGHVAVFNHGLKSYRELPVRLAEFGSVYR 370
WD+Y+ MF D+ R F LKPMNCPGH +F L+SYR+LP+R+AE G +R
Sbjct: 239 WDNYKERMFPFTELDN-----REFMLKPMNCPGHFLIFKSSLRSYRDLPLRIAELGYSHR 293
Query: 371 NEPSGSLHGLMRVRGFTQDDAHVFCTKEQMFNECLKIHNLIISIYKDFGFEKIMVKLSTR 430
E SG LHGLMRVRGFTQDDAH+FCT++Q+ E LI +Y DFGF +LSTR
Sbjct: 294 YEQSGELHGLMRVRGFTQDDAHIFCTEDQIKEEFKNQFRLIQKVYSDFGFSFDKYELSTR 353
Query: 431 -PEKRVGSDALWDDAENIMKGVLDTIKNSSQDRINTGVLLGEGAFYGPKFEYILKDAIGR 489
PE +G D LW+ AE ++ L + + + G GAFYGPK ++ KDA+GR
Sbjct: 354 DPEDFIGEDELWEKAEAALEEALKEL------GVPYEIDPGRGAFYGPKIDFAFKDALGR 407
Query: 490 DWQCGTIQVDFNLPSRFNAFYVNSHSEKCHPVMIHRAVFGSIERFIGIMIENFKGNLPLW 549
+WQC T+Q+DF LP RF+ YV+ +E+ PVMIHRA+ GSIERFI I++E + GN PLW
Sbjct: 408 EWQCATVQLDFELPERFDLTYVDEDNEEKRPVMIHRAILGSIERFIAILLEKYAGNFPLW 467
Query: 550 LSPIQAIVTTITSSAVEYAQEIANLLKSHHLSIETDFRNETINYKIREHSIKKIPIIIIC 609
L+P+Q +V + ++YA+++A LK + ++ D RNE + KIRE +KIP +++
Sbjct: 468 LAPVQVVVIPVNERHLDYAKKVAQKLKKAGIRVDVDDRNERLGKKIREAQKQKIPYMLVV 527
Query: 610 GDKEASERSIGIRRFGSTTTQKVSLLDAIPILTKE 644
GDKE ++ +R +K+SL + + L KE
Sbjct: 528 GDKEMESLAVNVRTRKGQKLEKMSLDEFLEKLRKE 562
|
This model represents the threonyl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. Note that B. subtilis has closely related isozymes thrS and thrZ. The N-terminal regions are quite dissimilar between archaeal and eubacterial forms, while some eukaryotic forms are missing sequence there altogether.. Length = 563 |
| >gnl|CDD|178431 PLN02837, PLN02837, threonine-tRNA ligase | Back alignment and domain information |
|---|
Score = 574 bits (1481), Expect = e-164
Identities = 266/569 (46%), Positives = 374/569 (65%), Gaps = 21/569 (3%)
Query: 63 TPEDPRSLAVIRHSCAHIMAEAVQSIWPEVQVAIGPIIEDGFYYDFDKEQPFSSDELAQI 122
T E L IRH+CAH+MA AVQ ++P+ +V IGP IE+GFYYDFD E P + +L +I
Sbjct: 36 TNESSEKLLKIRHTCAHVMAMAVQKLFPDAKVTIGPWIENGFYYDFDME-PLTDKDLKRI 94
Query: 123 EKKMQEIIARDSPFLKQYLSHEKARELFESKKEAYKVEILESIPAKENVTLYRQG-EWFD 181
+K+M II+R+ P +++ +S E+A++ + E YK+EILE I +E +T+Y G EW+D
Sbjct: 95 KKEMDRIISRNLPLVREEVSREEAQKRIMAINEPYKLEILEGI-KEEPITIYHIGEEWWD 153
Query: 182 LCRGPHVRSTGQV-KKFFKLMKVAGAYWRGDSNRPMLSRIYGTAWNTQQELTQYLYFLEE 240
LC GPHV TG++ KK +L VAGAYWRGD ML RIYGTAW ++++L YL+F EE
Sbjct: 154 LCAGPHVERTGKINKKAVELESVAGAYWRGDEKNQMLQRIYGTAWESEEQLKAYLHFKEE 213
Query: 241 SEKRDHRKLAREMDLFHIAED-GSGVIFWHRKGWKIFQTLISYMRR-KIKDDYEEINTPQ 298
+++RDHR+L +++DLF I +D G G++FWH KG + + ++ + Y+ + TP
Sbjct: 214 AKRRDHRRLGQDLDLFSIQDDAGGGLVFWHPKGAIVRHIIEDSWKKMHFEHGYDLLYTPH 273
Query: 299 VLDQHLWQQSGHWDSYRANMFAVKCADDTIKDLRTFALKPMNCPGHVAVFNHGLKSYREL 358
V LW+ SGH D Y+ NM+ +D + LR PMNCP H+ V+ L SYR+L
Sbjct: 274 VAKADLWKTSGHLDFYKENMYDQMDIEDELYQLR-----PMNCPYHILVYKRKLHSYRDL 328
Query: 359 PVRLAEFGSVYRNEPSGSLHGLMRVRGFTQDDAHVFCTKEQMFNECLKIHNLIISIYKDF 418
P+R+AE G+VYR E SGSLHGL RVRGFTQDDAH+FC ++Q+ +E + +L I K F
Sbjct: 329 PIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIFCLEDQIKDEIRGVLDLTEEILKQF 388
Query: 419 GFEKIMVKLSTRPEKRVGSDALWDDAENIMKGVLDTIKNSSQDR-INTGVLLGEGAFYGP 477
GF K + LSTRPEK VGSD +W+ A ++ LD D+ V G GAFYGP
Sbjct: 389 GFSKYEINLSTRPEKSVGSDDIWEKATTALRDALD-------DKGWEYKVDEGGGAFYGP 441
Query: 478 KFEYILKDAIGRDWQCGTIQVDFNLPSRFNAFYVNSHSEKCHPVMIHRAVFGSIERFIGI 537
K + ++DA+GR WQC TIQVDFNLP RF+ YV+S+SEK P+MIHRA+ GS+ERF G+
Sbjct: 442 KIDLKIEDALGRKWQCSTIQVDFNLPERFDITYVDSNSEKKRPIMIHRAILGSLERFFGV 501
Query: 538 MIENFKGNLPLWLSPIQAIVTTITSSAVEYAQEIANLLKSHHLSIETDFRNETINYKIRE 597
+IE++ G+ PLWL+P+QA V +T + +EY +E+ LK+ + E E + IR
Sbjct: 502 LIEHYAGDFPLWLAPVQARVLPVTDNELEYCKEVVAKLKAKGIRAEVCH-GERLPKLIRN 560
Query: 598 HSIKKIPIIIICGDKEASERSIGIR-RFG 625
+KIP++ + G KE R++ +R R G
Sbjct: 561 AETQKIPLMAVVGPKEVETRTLTVRSRHG 589
|
Length = 614 |
| >gnl|CDD|30790 COG0441, ThrS, Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 701 bits (1811), Expect = 0.0
Identities = 301/610 (49%), Positives = 411/610 (67%), Gaps = 33/610 (5%)
Query: 37 KAVAVAINGKVCDLSDPVREGSIEIITPEDPRSLAVIRHSCAHIMAEAVQSIWPEVQVAI 96
KA+A+ ++G++ DL D EIIT ED L +IRHSCAH++A+AV+ ++P+V I
Sbjct: 1 KALAIHVDGEL-DLKD-------EIITAEDEEGLEIIRHSCAHVLAQAVKRLYPDV--TI 50
Query: 97 GPIIEDGFYYDFDKEQPFSSDELAQIEKKMQEIIARDSPFLKQYLSHEKARELFESKKEA 156
GP+IE+GFYYDFD ++P + ++L +IEK+M+EI + P ++ +S E+AR F
Sbjct: 51 GPVIEEGFYYDFDVKEPITPEDLLKIEKEMKEIAKENLPIEREVVSREEARAPFGP---- 106
Query: 157 YKVEILESIPAKENVTLYRQGEWFDLCRGPHVRSTGQVKKFFKLMKVAGAYWRGDSNRPM 216
YK E+++ ++ Y QGE+ DLCRGPHV STG++ FKL+K+AGAYWRGD N M
Sbjct: 107 YKAELIDCKG--HPLSEYSQGEFVDLCRGPHVPSTGKI--AFKLLKLAGAYWRGDENNEM 162
Query: 217 LSRIYGTAWNTQQELTQYLYFLEESEKRDHRKLAREMDLFHI-AEDGSGVIFWHRKGWKI 275
L RIYGTA+ ++EL YL LEE++KRDHRKL +E+DLF E+G G+ FWH KG I
Sbjct: 163 LQRIYGTAFADKKELEAYLKRLEEAKKRDHRKLGKELDLFSFSPEEGPGLPFWHPKGATI 222
Query: 276 FQTLISYMRRK-IKDDYEEINTPQVLDQHLWQQSGHWDSYRANMFAVKCADDTIKDLRTF 334
L Y+R K Y+E+ TP + D LW+ SGHWD+Y+ +MF T D R +
Sbjct: 223 RNLLEDYVRTKLRSYGYQEVKTPVLADLELWELSGHWDNYKEDMFL------TESDDREY 276
Query: 335 ALKPMNCPGHVAVFNHGLKSYRELPVRLAEFGSVYRNEPSGSLHGLMRVRGFTQDDAHVF 394
ALKPMNCPGH+ +F GL+SYRELP+RLAEFG VYR E SG+LHGLMRVRGFTQDDAH+F
Sbjct: 277 ALKPMNCPGHILIFKSGLRSYRELPLRLAEFGYVYRYEKSGALHGLMRVRGFTQDDAHIF 336
Query: 395 CTKEQMFNECLKIHNLIISIYKDFGFEKIMVKLSTRPEKRVGSDALWDDAENIMKGVLDT 454
CT +Q+ +E I LI+ +YKDFGF VKLSTRP K +GSD +WD AE ++ L
Sbjct: 337 CTPDQIKDEFKGILELILEVYKDFGFTDYEVKLSTRP-KFIGSDEMWDKAEAALREALKE 395
Query: 455 IKNSSQDRINTGVLLGEGAFYGPKFEYILKDAIGRDWQCGTIQVDFNLPSRFNAFYVNSH 514
I + GEGAFYGPK ++ +KDA+GR+WQ GTIQ+DFNLP RF+ YV+
Sbjct: 396 I------GVEYVEEPGEGAFYGPKIDFQVKDALGREWQLGTIQLDFNLPERFDLEYVDED 449
Query: 515 SEKCHPVMIHRAVFGSIERFIGIMIENFKGNLPLWLSPIQAIVTTITSSAVEYAQEIANL 574
EK PV+IHRA+ GSIERFIGI++E++ G LP WL+P+Q V + ++YA+E+A
Sbjct: 450 GEKKRPVIIHRAILGSIERFIGILLEHYAGALPTWLAPVQVRVIPVADEHLDYAKEVAEK 509
Query: 575 LKSHHLSIETDFRNETINYKIREHSIKKIPIIIICGDKEASERSIGIRRFGSTTTQKVSL 634
L+ + ++ D RNE + KIRE +KIP +I+ GDKE ++ +RR G + ++L
Sbjct: 510 LRKAGIRVDIDDRNEKLGKKIREAGTQKIPYVIVVGDKEVETGTVVVRRRGGKQQKSMTL 569
Query: 635 LDAIPILTKE 644
+ + L KE
Sbjct: 570 EELVEELKKE 579
|
Length = 589 |
| >gnl|CDD|29816 cd00771, ThrRS_core, Threonyl-tRNA synthetase (ThrRS) class II core catalytic domain | Back alignment and domain information |
|---|
Score = 414 bits (1067), Expect = e-116
Identities = 153/310 (49%), Positives = 199/310 (64%), Gaps = 13/310 (4%)
Query: 244 RDHRKLAREMDLFHIAEDGSGVIFWHRKGWKIFQTLISYMRRK-IKDDYEEINTPQVLDQ 302
R F E G G+ FW KG I L ++R K Y+E+ TP + ++
Sbjct: 1 DHRRLGGELELFFFFDEAGPGLPFWLPKGAIIRNELEDFLRELQRKRGYQEVETPIIYNK 60
Query: 303 HLWQQSGHWDSYRANMFAVKCADDTIKDLRTFALKPMNCPGHVAVFNHGLKSYRELPVRL 362
LW+ SGHWD YR NMF + D + LKPMNCPGH +F +SYR+LP+RL
Sbjct: 61 ELWETSGHWDHYRENMFPFEEED------EEYGLKPMNCPGHCLIFKSKPRSYRDLPLRL 114
Query: 363 AEFGSVYRNEPSGSLHGLMRVRGFTQDDAHVFCTKEQMFNECLKIHNLIISIYKDFGFEK 422
AEFG+V+R E SG+LHGL RVRGFTQDDAH+FCT +Q+ E + +LI +Y DFGF
Sbjct: 115 AEFGTVHRYEQSGALHGLTRVRGFTQDDAHIFCTPDQIKEEIKGVLDLIKEVYSDFGFFD 174
Query: 423 IMVKLSTRPEKRVGSDALWDDAENIMKGVLDTIKNSSQDRINTGVLLGEGAFYGPKFEYI 482
V+LSTRPEK +GSD +W+ AE ++ L+ I + + GEGAFYGPK ++
Sbjct: 175 YKVELSTRPEKFIGSDEVWEKAEAALREALEEI------GLPYEINEGEGAFYGPKIDFH 228
Query: 483 LKDAIGRDWQCGTIQVDFNLPSRFNAFYVNSHSEKCHPVMIHRAVFGSIERFIGIMIENF 542
+KDA+GR+WQC TIQ+DFNLP RF+ Y+ EK PVMIHRA+ GSIERFIGI+IE++
Sbjct: 229 VKDALGREWQCSTIQLDFNLPERFDLTYIGEDGEKKRPVMIHRAILGSIERFIGILIEHY 288
Query: 543 KGNLPLWLSP 552
G PLWL+P
Sbjct: 289 AGKFPLWLAP 298
|
ThrRS is a homodimer. It is responsible for the attachment of threonine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain.. Length = 298 |
| >gnl|CDD|29810 cd00670, Gly_His_Pro_Ser_Thr_tRS_core, Gly_His_Pro_Ser_Thr_tRNA synthetase class II core domain | Back alignment and domain information |
|---|
Score = 136 bits (344), Expect = 2e-32
Identities = 56/273 (20%), Positives = 101/273 (36%), Gaps = 43/273 (15%)
Query: 272 GWKIFQTLISYMRRKIKDD-YEEINTPQVLDQHLWQQSGHWDSYRANMFAVKCADDTIKD 330
G +++ L ++ ++ + Y+EI P + L+ + GH D YR M+ + ++D
Sbjct: 1 GTALWRALERFLDDRMAEYGYQEILFPFLAPTVLFFKGGHLDGYRKEMYTFEDKGRELRD 60
Query: 331 LRTFALKPMNCPGHVAVFNHGLKSYRELPVRLAEFGSVYRNEPSGSLHGLMRVRGFTQDD 390
L+P C +F+ + SYR LP+RL + G +R+EPSG GLMRVR F Q +
Sbjct: 61 -TDLVLRPAACEPIYQIFSGEILSYRALPLRLDQIGPCFRHEPSGR-RGLMRVREFRQVE 118
Query: 391 AHVFCTKEQMFNECLKIHNLIISIYKDFG---FEKIMVKLSTRPEKRVGSDALWDDAENI 447
VF E+ + + + ++ + V ++ P G
Sbjct: 119 YVVFGEPEEA----EEERREWLELAEEIARELGLPVRVVVADDPFFGRGGK--------- 165
Query: 448 MKGVLDTIKNSSQDRINTGVLLGEGAFYGPKFEYILKDAI-GRDWQCGTIQVDFNLPSRF 506
G A E+ L + GR + + +L
Sbjct: 166 ---------------------RGLDAGRETVVEFELLLPLPGRAKETAVGSANVHLDHFG 204
Query: 507 NAFYVNSHSEKCHPVMIHRAVFGSIERFIGIMI 539
+F ++ G ER + ++
Sbjct: 205 ASFKIDEDGGGRAHTGCGG--AGGEERLVLALL 235
|
This domain is the core catalytic domain of tRNA synthetases of the subgroup containing glycyl, histidyl, prolyl, seryl and threonyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. These enzymes belong to class II aminoacyl-tRNA synthetases (aaRS) based upon their structure and the presence of three characteristic sequence motifs in the core domain. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ and the accessory subunit of mitochondrial polymerase gamma (Pol gamma b) . Most class II tRNA synthetases are dimers, with this subgroup consisting of mostly homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.. Length = 235 |
| >gnl|CDD|29823 cd00778, ProRS_core_arch_euk, Prolyl-tRNA synthetase (ProRS) class II core catalytic domain | Back alignment and domain information |
|---|
Score = 55.2 bits (133), Expect = 6e-08
Identities = 56/281 (19%), Positives = 112/281 (39%), Gaps = 47/281 (16%)
Query: 263 SGVIFWHRKGWKIFQTLISYMRRKIKD-DYEEINTPQVLDQHLWQ-QSGHWDSYRANMFA 320
G + + G+ I++ + + ++IK+ +E + P ++ + + + H + + +
Sbjct: 22 KGCMVFRPYGYAIWENIQKILDKEIKETGHENVYFPLLIPESELEKEKEHIEGFAPEVAW 81
Query: 321 VKCADDTIKDLRTFALKPMNCPGHVAVFNHGLKSYRELPVRLAEFGSVYRNEPSGSLHGL 380
V + AL+P + +F+ ++SYR+LP+++ ++ +V+R E +
Sbjct: 82 VTHGGLEELEEP-LALRPTSETAIYPMFSKWIRSYRDLPLKINQWVNVFRWETKTT-RPF 139
Query: 381 MRVRGFTQDDAH-VFCTKEQMFNECLKIHNLIISIYKDFGFEKIMVKLSTRPEKRVGSDA 439
+R R F + H T+E+ E L+I +L Y+D I V + E
Sbjct: 140 LRTREFLWQEGHTAHATEEEAEEEVLQILDLYKEFYED--LLAIPVVKGRKTEW------ 191
Query: 440 LWDDAENIMKGVLDTIKNSSQDRINTGVLLGEGAFYGPKFEYILKDAIGRDWQCGTI-QV 498
++ GA Y E ++ D GR Q GT +
Sbjct: 192 ---------------------EKF-------AGADYTYTIEAMMPD--GRALQSGTSHNL 221
Query: 499 DFNLPSRFNAFYVNSHSEKCHPVMIHRAVFGSIERFIGIMI 539
N F+ Y + +K + H+ +G R IG +I
Sbjct: 222 GQNFSKAFDIKYQDKDGQKEYV---HQTSWGISTRLIGAII 259
|
ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from archaea, the cytoplasm of eukaryotes and some bacteria.. Length = 261 |
| >gnl|CDD|36850 KOG1637, KOG1637, KOG1637, Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 378 bits (973), Expect = e-105
Identities = 192/526 (36%), Positives = 285/526 (54%), Gaps = 41/526 (7%)
Query: 102 DGFYYDFDKEQPFSSDELAQIEKKMQEIIARDSPFLKQYLSHEKARELFESKKEAYKVEI 161
+G +D D+ P D L E++ D K H A L E+ ++ Y +
Sbjct: 40 NGVLWDLDR--PLEGDCL--------ELLKFDDDEGKDVFWHSSAHVLGEALEQEYGAHL 89
Query: 162 LESIPAKENV--TLYRQ--GEWFDLCRGPHVRSTGQVKKFFKLMKVAGAYWRGDSNRPML 217
P +E + + F PH+R TG++K F K++K + AYW GDS
Sbjct: 90 CIGPPIEEGFYYDMLDEISSNDFPSIEAPHIRHTGKIKAF-KILKNSSAYWEGDS----- 143
Query: 218 SRIYGTAWNTQQELTQYLYFLEESEKRDHRKLAREMDLFHIAEDGSGVIFWHRKGWKIFQ 277
+ ++L ++ F EE++KRDHRK+ +E +LF E G F+ G +I+
Sbjct: 144 -------FPDPKQLKEWEKFQEEAKKRDHRKIGKEQELFFFHELSPGSCFFLPHGTRIYN 196
Query: 278 TLISYMRRKI-KDDYEEINTPQVLDQHLWQQSGHWDSYRANMFAVKCADDTIKDLRTFAL 336
TL+ ++R + K + E+ TP + ++ LW+ SGHW +Y NMF + + FAL
Sbjct: 197 TLVDFIRAEYRKRGFTEVITPNIYNKKLWETSGHWQNYSENMFKFEVEKEE------FAL 250
Query: 337 KPMNCPGHVAVFNHGLKSYRELPVRLAEFGSVYRNEPSGSLHGLMRVRGFTQDDAHVFCT 396
KPMNCPGH +F H +SYRELP+R A+FG ++RNE SG+L GL RVR F QDDAH+FCT
Sbjct: 251 KPMNCPGHCLMFAHRDRSYRELPLRFADFGVLHRNEASGALSGLTRVRRFQQDDAHIFCT 310
Query: 397 KEQMFNECLKIHNLIISIYKDFGFEKIMVKLSTRPEKRVGSDALWDDAENIMKGVLDTIK 456
+Q+ E + + +Y FGF + LSTRPEK +G WD+AE ++ L+ +
Sbjct: 311 PDQVKEEIKGCLDFLDYVYGVFGF-TFKLNLSTRPEKFLGDLETWDEAEFKLEEALN--E 367
Query: 457 NSSQDRINTGVLLGEGAFYGPKFEYILKDAIGRDWQCGTIQVDFNLPSRFNAFYVNSHSE 516
+ +N G +GAFYGPK + L DA+GR QC TIQ+DF LP RF+ Y +
Sbjct: 368 SGEPWVLNPG----DGAFYGPKIDITLDDALGRKHQCATIQLDFQLPIRFDLEYETEDGD 423
Query: 517 KCHPVMIHRAVFGSIERFIGIMIENFKGNLPLWLSPIQAIVTTITSSAVEYAQEIANLLK 576
PVMIHRA+ GS+ER I I++E++ G P WLSP QA+V ++ ++YA + L+
Sbjct: 424 LERPVMIHRAILGSVERMIAILLESYGGKWPFWLSPRQAVVIPVSEGPLDYATSVQKQLE 483
Query: 577 SHHLSIETDFRNETINYKIREHSIKKIPIIIICGDKEASERSIGIR 622
++ D + T+ KIR + I + GDKE + +R
Sbjct: 484 EAGFYVDLDPTDSTLRKKIRNAQLAHYNFIFVVGDKEVETGRVNVR 529
|
Length = 560 |
| >gnl|CDD|184826 PRK14799, thrS, threonyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 358 bits (921), Expect = 2e-99
Identities = 181/501 (36%), Positives = 287/501 (57%), Gaps = 23/501 (4%)
Query: 149 LFESKKEAYKVEILESIPAKENVTLYRQGEWFDLCRGPHVRSTGQVKKFFKLMKVAGAYW 208
L E KK +L ++ + N +Y+ G + ST K+F+++ ++ +
Sbjct: 48 LDEVKKAI-NENVLANVSIENNQIVYK-GNKVSIIEDKVSISTNLNPKYFEILNISTHH- 104
Query: 209 RGDSNRPMLSRIYGTAWNTQQELTQYLYFLEESEKRDHRKLAREMDLFHIAED-GSGVIF 267
+ RI G A+ T+++L YL +LE++E+ DHR + ++DLF E+ GSG++
Sbjct: 105 --PNPNEQYVRIRGVAFETEEQLKDYLTWLEKAEETDHRLIGEKLDLFSFHEEAGSGLVL 162
Query: 268 WHRKGWKIFQTLISYMRRKIKDD--YEEINTPQVLDQHLWQQSGHWDSYRANMFAVKCAD 325
+H KG I LI++MR +I D Y+E+ T V +W+ SGH+ YR +
Sbjct: 163 FHPKGQTIRNELIAFMR-EINDSMGYQEVYTSHVFKTDIWKISGHYTLYRDKLIVFNMEG 221
Query: 326 DTIKDLRTFALKPMNCPGHVAVFNHGLKSYRELPVRLAEFGSVYRNEPSGSLHGLMRVRG 385
D + +KPMNCP H+ ++ ++YR+LP+R +EFG VYR E G L+GL+RVRG
Sbjct: 222 DE------YGVKPMNCPAHILIYKSKPRTYRDLPIRFSEFGHVYRWEKKGELYGLLRVRG 275
Query: 386 FTQDDAHVFCTKEQMFNECLKIHNLIISIYKDFGF--EKIMVKLSTRPEKRVGSDALWDD 443
F QDD H+F ++Q+ E + + + ++ FGF + I LSTRP++ +GSD LW+
Sbjct: 276 FVQDDGHIFLREDQLREEIKMLISKTVEVWHKFGFKDDDIKPYLSTRPDESIGSDELWEK 335
Query: 444 AENIMKGVLDTIKNSSQDRINTGVLLGEGAFYGPKFEYILKDAIGRDWQCGTIQVDFNLP 503
A N + L + G+ EGAFYGPK ++ ++D++GR WQ TIQVDFNLP
Sbjct: 336 ATNALISALQESG------LKFGIKEKEGAFYGPKIDFEIRDSLGRWWQLSTIQVDFNLP 389
Query: 504 SRFNAFYVNSHSEKCHPVMIHRAVFGSIERFIGIMIENFKGNLPLWLSPIQAIVTTITSS 563
RF Y++ K PVM+HRA++GSI+RF+ I++E+FKG LP WLS +Q V IT
Sbjct: 390 ERFKLEYIDKDGIKKRPVMVHRAIYGSIDRFVAILLEHFKGKLPTWLSSVQVRVLPITDE 449
Query: 564 AVEYAQEIANLLKSHHLSIETDFRNETINYKIREHSIKKIPIIIICGDKEASERSIGIRR 623
EYA+++ N ++ + E D+ ET++ +I+ + +P I+I G KEASE ++ +R
Sbjct: 450 VNEYAEKVLNDMRKRRIRAEIDYAGETLSKRIKNAYDQGVPYILIVGKKEASEGTVTVRA 509
Query: 624 FGSTTTQKVSLLDAIPILTKE 644
G+ + V + +L E
Sbjct: 510 RGNIEVRNVKFEKFLELLITE 530
|
Length = 545 |
| >gnl|CDD|144252 pfam00587, tRNA-synt_2b, tRNA synthetase class II core domain (G, H, P, S and T) | Back alignment and domain information |
|---|
Score = 152 bits (386), Expect = 3e-37
Identities = 53/170 (31%), Positives = 83/170 (48%), Gaps = 8/170 (4%)
Query: 275 IFQTLISYMRRK-IKDDYEEINTPQVLDQHLWQQSGHWDSYRANMFAVKCADDTIKDLRT 333
+ L +++R + Y+E++TP + + LW+ SGHWD Y M+ + D +
Sbjct: 1 LRNALENFIRDLFKRYGYQEVDTPILEPKELWEGSGHWDDYFDEMY--RFKD---RGGEE 55
Query: 334 FALKPMNCPGHVAVFNHGLKSYRELPVRLAEFGSVYRNEPSGSLHGLMRVRGFTQDDAHV 393
L+P G +F + + SYR+LP++L + G +R E GL RVR FTQ DA +
Sbjct: 56 LYLRPTAEVGITRLFKNEILSYRDLPLKLYQIGPCFRYEA-RPRRGLGRVREFTQVDAEI 114
Query: 394 FCTKEQMFNECLKIHNLIISIYKDFGFEKIMVKLSTRPEKRVGSDALWDD 443
F T EQ E ++ L I +D G V L+TR + + D
Sbjct: 115 FGTPEQSEEEDEELLKLAEEILQDLGL-PYRVVLNTRGDLGGYASKTGDL 163
|
Other tRNA synthetase sub-families are too dissimilar to be included. This domain is the core catalytic domain of tRNA synthetases and includes glycyl, histidyl, prolyl, seryl and threonyl tRNA synthetases. Length = 170 |
| >gnl|CDD|161864 TIGR00409, proS_fam_II, prolyl-tRNA synthetase, family II | Back alignment and domain information |
|---|
Score = 66.8 bits (163), Expect = 2e-11
Identities = 46/166 (27%), Positives = 80/166 (48%), Gaps = 12/166 (7%)
Query: 258 IAEDGSGVIFWHRKGWKIFQTLISYMRRKI-KDDYEEINTPQVLDQHLWQQSGHWDSYRA 316
I GSG+ W G ++ + + + +R ++ KD E+ P + LWQ+SG WD+Y
Sbjct: 32 IRRLGSGLYNWLPLGLRVLKKVENIVREEMNKDGAIEVLLPALQPAELWQESGRWDTYGP 91
Query: 317 NMFAVKCADDTIKDLRTFALKPMNCPGHVAVFNHGLKSYRELPVRLAEFGSVYRNE--PS 374
+ +K R F L P + + + +KSY++LP+ L + + +R+E P
Sbjct: 92 ELLRLKDRKG-----REFVLGPTHEEVITDLARNEIKSYKQLPLNLYQIQTKFRDEIRPR 146
Query: 375 GSLHGLMRVRGFTQDDAHVFCT-KEQMFNECLKIHNLIISIYKDFG 419
GLMR R F DA+ F + +E + K++ +I+ G
Sbjct: 147 F---GLMRGREFIMKDAYSFHSDEESLDATYQKMYQAYSNIFSRLG 189
|
Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent groups. This group includes enzymes from Escherichia coli, Bacillus subtilis, Aquifex aeolicus, the spirochete Treponema pallidum, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae. The other group includes the Pro-specific domain of a human multifunctional tRNA ligase and the prolyl-tRNA synthetases from the Archaea, the Mycoplasmas, and the spirochete Borrelia burgdorferi. Length = 568 |
| >gnl|CDD|58340 cd00772, ProRS_core, Prolyl-tRNA synthetase (ProRS) class II core catalytic domain | Back alignment and domain information |
|---|
Score = 54.7 bits (131), Expect = 9e-08
Identities = 34/178 (19%), Positives = 65/178 (36%), Gaps = 3/178 (1%)
Query: 262 GSGVIFWHRKGWKIFQTLISYMRRKIKDD-YEEINTPQVLDQHLWQQSGHWDSYRANMFA 320
G G+I + I + + + + K+ + P + ++ D + A
Sbjct: 21 GRGIINFLPLAKAILDKIENVLDKMFKEHGAQNALFPFFILASFLEKEAEHDEGFSKELA 80
Query: 321 VKCADDTIKDLRTFALKPMNCPGHVAVFNHGLKSYRELPVRLAEFGSVYRNEPSGSLHGL 380
V + FAL+P + +KS+++LP L + G+ +R+E G
Sbjct: 81 VFKDAGDEELEEDFALRPTLEENIGEIAAKFIKSWKDLPQHLNQIGNKFRDEIR-PRFGF 139
Query: 381 MRVRGFTQDDAHVF-CTKEQMFNECLKIHNLIISIYKDFGFEKIMVKLSTRPEKRVGS 437
+R R F D H E+ E L + + I +D + + K G+
Sbjct: 140 LRAREFIMKDGHSAHADAEEADEEFLNMLSAYAEIARDLAAIDFIEGEADEGAKFAGA 197
|
ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain.. Length = 264 |
| >gnl|CDD|73226 cd00773, HisRS-like_core, Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 4e-04
Identities = 35/166 (21%), Positives = 55/166 (33%), Gaps = 34/166 (20%)
Query: 274 KIFQTLISYMRRKIKDDYEEINTPQVLDQHLWQQSGHWDSYRANMFAVKCADDTIKDL-- 331
I TL R YEEI+TP +F K D+ K++
Sbjct: 7 YIEDTLREVFERY---GYEEIDTPVF--------------EYTELFLRKSGDEVSKEMYR 49
Query: 332 ------RTFALKPMNCPGHVAVFNHGLKSYRELPVRLAEFGSVYRNEPSGSLHGLMRVRG 385
R AL+P LP++L G V+R E R R
Sbjct: 50 FKDKGGRDLALRPDLTAPVARAVAEN-LLSLPLPLKLYYIGPVFRYERPQKG----RYRE 104
Query: 386 FTQDDAHVFCTKEQMFN-ECLKIHNLIISIYKDFGFEKIMVKLSTR 430
F Q + + + + E + L + I + G + +K++ R
Sbjct: 105 FYQVGVEIIGSDSPLADAEVIA---LAVEILEALGLKDFQIKINHR 147
|
HisRS is a homodimer. It is responsible for the attachment of histidine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ. HisZ along with HisG catalyze the first reaction in histidine biosynthesis. HisZ is found only in a subset of bacteria and differs from HisRS in lacking a C-terminal anti-codon binding domain.. Length = 261 |
| >gnl|CDD|183440 PRK12325, PRK12325, prolyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 39.8 bits (94), Expect = 0.002
Identities = 42/151 (27%), Positives = 63/151 (41%), Gaps = 29/151 (19%)
Query: 293 EINTPQVLDQHLWQQSGHWDSYRANMFAVKCADDTIKDL--RTFALKPMNCPGHVAVFNH 350
EI P + LW++SG +D+Y M IKD R P N +F
Sbjct: 68 EILMPTIQPADLWRESGRYDAYGKEML-------RIKDRHDREMLYGPTNEEMITDIFRS 120
Query: 351 GLKSYRELPVRLAEFGSVYRNE--PSGSLHGLMRVRGFTQDDAHVF-CTKE-------QM 400
+KSY++LP+ L +R+E P G+MR R F DA+ F +E +M
Sbjct: 121 YVKSYKDLPLNLYHIQWKFRDEIRPR---FGVMRGREFLMKDAYSFDLDEEGARHSYNRM 177
Query: 401 FNECLKIHNLIISIYKDFGFEKIMVKLSTRP 431
F L+ + G + I ++ T P
Sbjct: 178 FVAYLR-------TFARLGLKAIPMRADTGP 201
|
Length = 439 |
| >gnl|CDD|179698 PRK03991, PRK03991, threonyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
Score = 145 bits (367), Expect = 5e-35
Identities = 85/307 (27%), Positives = 150/307 (48%), Gaps = 34/307 (11%)
Query: 354 SYRELPVRLAEFGSV-YRNEPSGSLHGLMRVRGFTQDDAHVFCTK-EQMFNECLKIHNLI 411
SY+ LP+++ E + +R E G L GL R+R FT D H C EQ E K + +I
Sbjct: 303 SYKNLPLKMYELSTYSFRLEQRGELVGLKRLRAFTMPDMHTLCKDMEQAMEEFEKQYEMI 362
Query: 412 ISIYKDFG--FEKIMVKLSTRPEKRVGSDALWDDAENIMKGVLDTIKNSSQDRINTGVL- 468
+ +D G +E + R D +++ ++ + ++ R VL
Sbjct: 363 LETGEDLGRDYEVAI---------RFTED-FYEENKDWIVELVK--------REGKPVLL 404
Query: 469 --LGEGAFYGP-KFEYILKDAIGRDWQCGTIQVDFNLPSRFNAFYVNSHSEKCHPVMIHR 525
L E Y K E+ D++GR + T+Q+D RF YV+ + E+ +P+++H
Sbjct: 405 EILPERKHYWVLKVEFAFIDSLGRPIENPTVQIDVENAERFGIKYVDENGEEKYPIILHC 464
Query: 526 AVFGSIERFI-----GIMIENFKGN---LPLWLSPIQAIVTTITSSAVEYAQEIANLLKS 577
+ GSIER I E +G LP WLSP Q V ++ ++YA+E+A+ L++
Sbjct: 465 SPTGSIERVIYALLEKAAKEEEEGKVPMLPTWLSPTQVRVIPVSERHLDYAEEVADKLEA 524
Query: 578 HHLSIETDFRNETINYKIREHSIKKIPIIIICGDKEASERSIGIRRFGSTTTQKVSLLDA 637
+ ++ D R+E++ KIR+ + IP +++ GDKE + + + +++L +
Sbjct: 525 AGIRVDVDDRDESLGKKIRDAGKEWIPYVVVIGDKEMESGKLTVTIREESEKVEMTLEEL 584
Query: 638 IPILTKE 644
I + +E
Sbjct: 585 IERIKEE 591
|
Length = 613 |
| >gnl|CDD|181528 PRK08661, PRK08661, prolyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 54.0 bits (131), Expect = 1e-07
Identities = 70/301 (23%), Positives = 119/301 (39%), Gaps = 87/301 (28%)
Query: 352 LKSYRELPVRLAEFGSVYRNE----PSGSLHGLMRVRGFTQDDAH-VFCTKEQMFNECLK 406
++SYR+LP+ ++ +V R E P +R R F + H T+E+ E L+
Sbjct: 124 IQSYRDLPLLYNQWVNVVRWETKTRP------FLRTREFLWQEGHTAHATEEEAEEETLE 177
Query: 407 IHNLIISIYKDFGFEKIM---VKLSTRPEKRVGSDALWDDAENIMK--GVLDTIKNSSQD 461
+ IYK+F FE + V + + E W+ K G T
Sbjct: 178 MLE----IYKEF-FEDYLAIPVIIGKKTE--------WE------KFAGADYTYT----- 213
Query: 462 RINTGVLLGEGAFYGPKFEYILKDAIGRDWQCGTIQVDFNLPSRF-NAF---YVNSHSEK 517
E ++ D G+ Q GT L F AF + + +
Sbjct: 214 -----------------IEAMMPD--GKALQAGTSH---YLGQNFAKAFDIKFQDKDGKL 251
Query: 518 CHPVMIHRAVFGSIERFIG--IMIENFKGN-----LPLWLSPIQAIVTTITSSA------ 564
+ H+ +G R IG IM G+ LP ++PIQ ++ I
Sbjct: 252 EYV---HQTSWGVSTRLIGALIMTH---GDDKGLVLPPKIAPIQVVIVPIFKKEEKKEEV 305
Query: 565 VEYAQEIANLLKSHHLSIETD-FRNETINYKIREHSIKKIPIIIICGDKEASERSIGI-R 622
+EYA+E+A LK + ++ D ++T +K E +K +P+ I G ++ ++ + R
Sbjct: 306 LEYAKELAEELKKAGIRVKLDDRSDKTPGWKFNEWELKGVPLRIEIGPRDLENNTVVLVR 365
Query: 623 R 623
R
Sbjct: 366 R 366
|
Length = 477 |
| >gnl|CDD|39365 KOG4163, KOG4163, KOG4163, Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 39.6 bits (92), Expect = 0.003
Identities = 60/291 (20%), Positives = 109/291 (37%), Gaps = 60/291 (20%)
Query: 352 LKSYRELPVRLAEFGSVYRNEPSGSLHGLMRVRGFTQDDAH-VFCTKEQMFNECLKIHNL 410
++S+R+LP++L ++ +V R E +R R F + H F T E+ E L+I +L
Sbjct: 178 IQSHRDLPLKLNQWCNVVRWEFKHPQ-PFLRTREFLWQEGHTAFATPEEAEEEVLQILDL 236
Query: 411 IISIYKDFGFEKIMVKLSTRPEKRVGSDALWDDAENIMKGVLDTIKNSSQDRINTGVLLG 470
+Y++ ++ + EK G D T++
Sbjct: 237 YARVYEELLAIPVVKGRKSEKEKFAGGD------------YTTTVE-------------- 270
Query: 471 EGAFYGPKFEYILKDAIGRDWQCGTIQVDFNLPSRFN-AFYVNSHSEKCHP-VMIHRAVF 528
AF GR Q T +L F+ F + + + +
Sbjct: 271 --AFIP---------CSGRGIQGAT---SHHLGQNFSKMFEIVFEDPGEGEKEFVWQNSW 316
Query: 529 GSIERFIGIMIENFKGN----LPLWLSPIQAIVTTI----------TSSAVEYAQEIANL 574
G R IG+MI + LP ++P+Q +V + ++ + +
Sbjct: 317 GLSTRTIGVMIMTHGDDKGLVLPPRVAPVQVVVVPVGITDATSEEDKQELLDACSAVESR 376
Query: 575 LKSHHLSIETDFR-NETINYKIREHSIKKIPIIIICGDKE-ASERSIGIRR 623
L + E D R N T +K +K +P+ I G ++ AS + + +RR
Sbjct: 377 LLGAGIRAEADLRDNYTPGWKFNHWELKGVPLRIEIGPRDLASNQVVAVRR 427
|
Length = 551 |
| >gnl|CDD|29800 cd00860, ThrRS_anticodon, ThrRS Threonyl-anticodon binding domain | Back alignment and domain information |
|---|
Score = 94.4 bits (235), Expect = 9e-20
Identities = 30/87 (34%), Positives = 49/87 (56%)
Query: 552 PIQAIVTTITSSAVEYAQEIANLLKSHHLSIETDFRNETINYKIREHSIKKIPIIIICGD 611
P+Q +V +T ++YA+E+A L + +E D RNE + KIRE ++KIP I++ GD
Sbjct: 1 PVQVVVIPVTDEHLDYAKEVAKKLSDAGIRVEVDLRNEKLGKKIREAQLQKIPYILVVGD 60
Query: 612 KEASERSIGIRRFGSTTTQKVSLLDAI 638
KE ++ +R +SL + I
Sbjct: 61 KEVETGTVSVRTRDGGDLGSMSLDEFI 87
|
ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.. Length = 91 |
| >gnl|CDD|145985 pfam03129, HGTP_anticodon, Anticodon binding domain | Back alignment and domain information |
|---|
Score = 68.0 bits (167), Expect = 8e-12
Identities = 23/89 (25%), Positives = 44/89 (49%)
Query: 556 IVTTITSSAVEYAQEIANLLKSHHLSIETDFRNETINYKIREHSIKKIPIIIICGDKEAS 615
I +YAQ++A L+ + +E D RNE++ K R+ + IP ++ G+KE
Sbjct: 5 IPLGEKDELEDYAQKLAEELREAGIRVELDDRNESLGKKFRDADLIGIPFRLVVGEKELE 64
Query: 616 ERSIGIRRFGSTTTQKVSLLDAIPILTKE 644
++ +R + + VSL + + L +
Sbjct: 65 NGTVTVRDRDTGEKETVSLEELVEKLKEL 93
|
This domain is found in histidyl, glycyl, threonyl and prolyl tRNA synthetases it is probably the anticodon binding domain. Length = 93 |
| >gnl|CDD|29797 cd00738, HGTP_anticodon, HGTP anticodon binding domain, as found at the C-terminus of histidyl, glycyl, threonyl and prolyl tRNA synthetases, which are classified as a group of class II aminoacyl-tRNA synthetases (aaRS) | Back alignment and domain information |
|---|
Score = 52.6 bits (126), Expect = 3e-07
Identities = 23/92 (25%), Positives = 44/92 (47%), Gaps = 6/92 (6%)
Query: 552 PIQAIVTTIT---SSAVEYAQEIANLLKSHHLSIETDFRNETINYKIREHSIKKIPIIII 608
PI + +T A EYAQ++ N L ++ + + D R I K RE ++ +P ++
Sbjct: 1 PIDVAIVPLTDPRVEAREYAQKLLNALLANGIRVLYDDRERKIGKKFREADLRGVPFAVV 60
Query: 609 CGDKEASERSIGIRRFGSTTTQKVSL-LDAIP 639
G+ E + ++ T + +L +D +P
Sbjct: 61 VGEDELENGKVTVKS--RDTGESETLHVDELP 90
|
In aaRSs, the anticodon binding domain is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only. This domain is also found in the accessory subunit of mitochondrial polymerase gamma (Pol gamma b).. Length = 94 |
| >gnl|CDD|184902 PRK14938, PRK14938, Ser-tRNA(Thr) hydrolase; Provisional | Back alignment and domain information |
|---|
Score = 49.5 bits (118), Expect = 3e-06
Identities = 19/77 (24%), Positives = 43/77 (55%)
Query: 546 LPLWLSPIQAIVTTITSSAVEYAQEIANLLKSHHLSIETDFRNETINYKIREHSIKKIPI 605
LP WL+PIQ + + ++++ ++A L+ + + D ++++ KIR + IP
Sbjct: 268 LPDWLNPIQVRILPVKKDFLDFSIQVAERLRKEGIRVNVDDLDDSLGNKIRRAGTEWIPF 327
Query: 606 IIICGDKEASERSIGIR 622
+II G++E ++ ++
Sbjct: 328 VIIIGEREVKTSTLTVK 344
|
Length = 387 |
| >gnl|CDD|161881 TIGR00442, hisS, histidyl-tRNA synthetase | Back alignment and domain information |
|---|
Score = 47.1 bits (113), Expect = 1e-05
Identities = 17/92 (18%), Positives = 37/92 (40%), Gaps = 2/92 (2%)
Query: 531 IERFIGIMIENFKGNLPLWLSPIQAIVTTITSSAVEYAQEIANLLKSHHLSIETDFRNET 590
IER + ++ E G P S V + A A ++A L+ + +E D
Sbjct: 303 IERLLLLLEE--LGLEPPEESSPDVYVVPLGEEAELEALKLAQKLRKAGIRVEVDLGGRK 360
Query: 591 INYKIREHSIKKIPIIIICGDKEASERSIGIR 622
+ +++ +I G+ E + ++ ++
Sbjct: 361 LKKQLKYADKLGARFAVILGEDELANGTVTLK 392
|
This model finds a histidyl-tRNA synthetase in every completed genome. Apparent second copies from Bacillus subtilis, Synechocystis sp., and Aquifex aeolicus are slightly shorter, more closely related to each other than to other hisS proteins, and actually serve as regulatory subunits for an enzyme of histidine biosynthesis. They were excluded from the seed alignment and score much lower than do single copy histidyl-tRNA synthetases of other genomes not included in the seed alignment. These putative second copies of HisS score below the trusted cutoff. The regulatory protein kinase GCN2 of Saccharomyces cerevisiae (YDR283c), and related proteins from other species designated eIF-2 alpha kinase, have a domain closely related to histidyl-tRNA synthetase that may serve to detect and respond to uncharged tRNA(his), an indicator of amino acid starvation; these regulatory proteins are not orthologous and so score below the noise cutoff. Length = 397 |
| >gnl|CDD|178812 PRK00037, hisS, histidyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 39.0 bits (92), Expect = 0.004
Identities = 17/102 (16%), Positives = 39/102 (38%), Gaps = 18/102 (17%)
Query: 551 SPIQAIVTTITSSAVEYAQEIANLLKSHHLSIETDFRNETINYKIREHSIKK-------- 602
P+ V + A A ++A L++ + +E D+ +KK
Sbjct: 317 EPVDVYVVPLGEDAELAALKLAEKLRAAGIRVELDYGG---------RKLKKQFKYADKS 367
Query: 603 -IPIIIICGDKEASERSIGIRRFGSTTTQKVSLLDAIPILTK 643
++I G+ E + ++ ++ + Q V L + + L +
Sbjct: 368 GARFVLILGEDELANGTVTVKDLRTGEQQTVPLDELVEALKE 409
|
Length = 412 |
| >gnl|CDD|30791 COG0442, ProS, Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 85.7 bits (212), Expect = 3e-17
Identities = 77/383 (20%), Positives = 144/383 (37%), Gaps = 67/383 (17%)
Query: 258 IAEDGSGVIFWHRKGWKIFQTLISYMRRKI-KDDYEEINTPQVLDQHLWQQSGHWDSYRA 316
I + G+ W G ++ + + + +R ++ K +E+ P ++ LW++SG W+ +
Sbjct: 32 IRKPVKGLYVWLPLGLRVLEKIENIIREEMDKIGAQEVLFPTLIPAELWKESGRWEGFGP 91
Query: 317 NMFAVKCADDTIKDLRTFALKPMNCPGHVAVFNHGLKSYRELPVRLAEFGSVYRNEPSGS 376
+F VK D R AL+P + +F ++SY++LP++L + S +R+E
Sbjct: 92 ELFRVKDRGD-----RPLALRPTSEEVITDMFRKWIRSYKDLPLKLYQIQSKFRDEKRPR 146
Query: 377 LHGLMRVRGFTQDDAHVF-CTKEQMFNECLKIHNLIISIYKDFGFEKIMVKLSTRPEKRV 435
GL+R R F DA+ F +E K+ + I+ V
Sbjct: 147 -FGLLRGREFLMKDAYSFHADEEDAEETYEKMLDAYSRIFLRLPLIFGPV---------- 195
Query: 436 GSDALWDDAENIMKGVLDTIKNSSQDRINTGVLLGEGAFYGPKFEYILKDAIGRDWQCGT 495
D I G Y +FE ++ D G + Q T
Sbjct: 196 -----PADEGFI------------------------GGSYSHEFEALMPD--GGEDQIAT 224
Query: 496 IQVDFNLPSRFNAFYVNSHSEKCHP---VMIHRAVFGSIERFIGIMI----ENFKGNLPL 548
+ + F +++ E +H +G R IG I +N LP
Sbjct: 225 SH---HYGANFEKAFIDIKFEDEEEGELEYVHTTSYGISTRIIGAAILIHGDNEGLVLPP 281
Query: 549 WLSPIQAIVTTITSSA-------VEYAQEIANLLKSHHLSIETDFR-NETINYKIREHSI 600
++ IQ ++ I V Y +++A L+ + +E D R + +K+
Sbjct: 282 IVADIQVVIVPIFIKGANEHYKVVNYGRDVAEPLEKLGIRVEGDDRSPDGPGFKLNIWEG 341
Query: 601 KKIPIIIICGDKEASERSIGIRR 623
++ I G K + + +
Sbjct: 342 IEVGHIFELGTKYSEAMNATVLD 364
|
Length = 500 |
| >gnl|CDD|161863 TIGR00408, proS_fam_I, prolyl-tRNA synthetase, family I | Back alignment and domain information |
|---|
Score = 68.2 bits (167), Expect = 6e-12
Identities = 79/377 (20%), Positives = 145/377 (38%), Gaps = 61/377 (16%)
Query: 263 SGVIFWHRKGWKIFQTLISYMRRKIKD-DYEEINTPQVLDQHLWQQSG-HWDSYRANMFA 320
G W G+KI++ + +R + + +EE+ P ++ + + H + ++
Sbjct: 28 KGCYVWLPYGFKIWKNIQKILRNILDEIGHEEVYFPMLIPESELAKEKDHIKGFEPEVYW 87
Query: 321 VKCADDTIKDLRTFALKPMNCPGHVAVFNHGLKSYRELPVRLAEFGSVYRNEPSGSLHGL 380
+ + D AL+P + +F +KSY +LP+++ ++ +V+R E +
Sbjct: 88 ITHGGLSKLD-EPLALRPTSETAMYPMFKKWVKSYTDLPLKINQWVNVFRYETKHT-RPF 145
Query: 381 MRVRGFTQDDAH-VFCTKEQMFNECLKIHNLIISIYKDFGFEK--IMVKLSTRPEKRVGS 437
+R R FT +AH T E+ + L+ + IYK+F I + +PE
Sbjct: 146 LRTREFTWQEAHTAHATAEEAEEQVLRA----LDIYKEFIENSLAIPYFVGRKPEW---- 197
Query: 438 DALWDDAENIMKGVLDTIKNSSQDRINTGVLLGEGAFYGPKFEYILKDAIGRDWQCGTIQ 497
++ GA Y FE I+ D GR Q T
Sbjct: 198 -----------------------EKF-------AGAEYTWAFETIMPD--GRTLQIATSH 225
Query: 498 -VDFNLPSRFNAFYVNSHSEKCHPVMIHRAVFGSIERFIGIMI----ENFKGNLPLWLSP 552
+ N F + +K + ++ +G R IG +I + LP ++P
Sbjct: 226 NLGQNFAKTFEIKFETPTGDKEYA---YQTSYGISTRVIGALIAIHSDEKGLVLPPRVAP 282
Query: 553 IQAIVT------TITSSAVEYAQEIANLLKSHHLSIETDFRNETINYKIREHSIKKIPII 606
IQ ++ +E A+E+ + LK + D R+ K + IK IP+
Sbjct: 283 IQVVIIPIIFKKKENEKVMEAAREVRSRLKKAGFRVHIDDRDNRPGRKFYQWEIKGIPLR 342
Query: 607 IICGDKEASERSIGIRR 623
I G + + I R
Sbjct: 343 IEVGPNDIEKNIAVISR 359
|
Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent families. This family includes the archaeal enzyme, the Pro-specific domain of a human multifunctional tRNA ligase, and the enzyme from the spirochete Borrelia burgdorferi. The other family includes enzymes from Escherichia coli, Bacillus subtilis, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae. Length = 472 |
| >gnl|CDD|30473 COG0124, HisS, Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 3e-07
Identities = 76/440 (17%), Positives = 144/440 (32%), Gaps = 100/440 (22%)
Query: 274 KIFQTLISYMRRKIKD-DYEEINTPQVLDQHLWQQSG--HWDSYRANMFAVKCADDTIKD 330
+ + + S +R+ + + EI TP L+ + D M+ K D K
Sbjct: 19 ALREYIESTIRKVFESYGFSEIRTPIFEYTELFARKSGEETDVVEKEMYTFK---D--KG 73
Query: 331 LRTFALKPMNCPGHV-AVFNHGLKSYRELPVRLAEFGSVYRNEPSGSLHGLMRVRGFTQD 389
R+ AL+P AV + L P++L FG V+R E R R F Q
Sbjct: 74 GRSLALRPELTAPVARAVAENKL--DLPKPLKLYYFGPVFRYERPQKG----RYRQFYQF 127
Query: 390 DAHVFCTKEQMFN-ECLKIHNLIISIYKDFGFEKIMVKLSTR--PEKRVGS------DAL 440
V + + E + L + I + G +++++R E R+ +AL
Sbjct: 128 GVEVIGSDSPDADAEVIA---LAVEILEALGIGGFTLEINSRGILEGRLEYLGIDQREAL 184
Query: 441 WDDAENIMKGVLDTIKNSSQDRINTGVL-----------------------LGEGAF--- 474
+ + K + S+ R+ T L L E +
Sbjct: 185 LRYLDKLDKIGKLELDEDSKRRLKTNPLRVLDSKKDSDQELLKNAPELLDYLDEESLEHL 244
Query: 475 ---------YGPKFEYILKDAIGRDWQCGTIQVDFNLPSRFNAFYVNSHSEKCHPVMIHR 525
G +E G D+ GT+ F A ++
Sbjct: 245 EELLALLDALGISYEIDPSLVRGLDYYTGTV---------FEAVTDGLGAQG-------- 287
Query: 526 AVFGS------IERFIG---------------IMIENFKGNLPLWLSPIQAIVTTITSSA 564
+V G +E F G I+ +G + + V + A
Sbjct: 288 SVCGGGRYDGLVEEFGGKPTPAVGFAIGVERLILALEEEGKEDPVETRVDVYVVPLGEDA 347
Query: 565 VEYAQEIANLLKSHHLSIETDFRNETINYKIREHSIKKIPIIIICGDKEASERSIGIRRF 624
A ++A L++ +S+E D+ + + + +I G+ E + + ++
Sbjct: 348 EPEALKLAQKLRAAGISVEVDYSGRKLKKQFKYADKLGARFAVILGEDELANGVVTVKDL 407
Query: 625 GSTTTQKVSLLDAIPILTKE 644
+ ++V L + + L +
Sbjct: 408 ATGEQEEVPLDELVEELKEL 427
|
Length = 429 |
| >gnl|CDD|133437 cd01667, TGS_ThrRS_N, TGS _ThrRS_N: ThrRS (threonyl-tRNA Synthetase) is a class II tRNA synthetase that couples threonine to its cognate tRNA | Back alignment and domain information |
|---|
Score = 80.6 bits (200), Expect = 1e-15
Identities = 34/60 (56%), Positives = 43/60 (71%), Gaps = 1/60 (1%)
Query: 5 IKLTFPDGSIKNFPVHATGSDVAESISRSLAKKAVAVAINGKVCDLSDPVRE-GSIEIIT 63
IK+T PDGS+K FP T D+A+SIS LAKKAVA +NG++ DLS P+ E +EIIT
Sbjct: 1 IKITLPDGSVKEFPKGTTPLDIAKSISPGLAKKAVAAKVNGELVDLSRPLEEDCELEIIT 60
|
In addition to its catalytic and anticodon-binding domains, ThrRS has an N-terminal TGS domain, named after the ThrRS, GTPase, and SpoT proteins where it occurs. The TGS domain is thought to interact with the tRNA acceptor arm along with an adjacent N-terminal domain. The specific function of TGS is not well understood. Length = 61 |
| >gnl|CDD|145794 pfam02824, TGS, TGS domain | Back alignment and domain information |
|---|
Score = 56.0 bits (136), Expect = 3e-08
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 5 IKLTFPDGSIKNFPVHATGSDVAESISRSLAKKAVAVAINGKVCDLSDPVREG-SIEIIT 63
I++ PDG + P +T D A +I L KK + +NG+ L + +G +EI+T
Sbjct: 1 IRVYTPDGKVPELPRGSTPEDFAYAIHTDLGKKFIGAKVNGQRVGLDHVLEDGDVVEIVT 60
|
The TGS domain is named after ThrRS, GTPase, and SpoT. Interestingly, TGS domain was detected also at the amino terminus of the uridine kinase from the spirochaete Treponema pallidum (but not any other organism, including the related spirochaete Borrelia burgdorferi). TGS is a small domain that consists of ~50 amino acid residues and is predicted to possess a predominantly beta-sheet structure. There is no direct information on the functions of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role. Length = 60 |
| >gnl|CDD|133438 cd01668, TGS_RelA_SpoT, TGS_RelA_SpoT: The RelA (SpoT) protein, also referred to as ppGpp hydrolase/synthetase, is a ribosome-associated protein that is activated during amino acid starvation and thought to mediate the stringent response | Back alignment and domain information |
|---|
Score = 42.9 bits (102), Expect = 3e-04
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 10 PDGSIKNFPVHATGSDVAESISRSLAKKAVAVAINGKVCDLSDPVREG-SIEIIT 63
P G I P AT D A +I + + V +NGK+ LS +++G +EIIT
Sbjct: 6 PKGEIIELPAGATVLDFAYAIHTEIGNRCVGAKVNGKLVPLSTVLKDGDIVEIIT 60
|
RelA contains a TGS domain, named after the Threonyl-tRNA Synthetase, GTPase, and SpoT proteins where it occurs. The function of the TGS domain is unknown. Length = 60 |
| >gnl|CDD|29813 cd00768, class_II_aaRS-like_core, Class II tRNA amino-acyl synthetase-like catalytic core domain | Back alignment and domain information |
|---|
Score = 77.0 bits (189), Expect = 1e-14
Identities = 58/267 (21%), Positives = 94/267 (35%), Gaps = 63/267 (23%)
Query: 275 IFQTLISYMRRKIKD-DYEEINTPQVLDQHLWQQSGHWDSYRANMFAVKCADDTIKDLRT 333
I + +RR + + ++E+ TP V + L +++GH + A D
Sbjct: 1 IRSKIEQKLRRFMAELGFQEVETPIVEREPLLEKAGHEPKDLLPVGAENEED-------- 52
Query: 334 FALKPMNCPGHVAVFNHGLKSYRELPVRLAEFGSVYRNEPSGSLHGLMRVRGFTQDDAHV 393
L+P PG V +F + R+LP+RLAE G +RNE GL RVR FTQ + V
Sbjct: 53 LYLRPTLEPGLVRLFVSHI---RKLPLRLAEIGPAFRNEGGRR--GLRRVREFTQLEGEV 107
Query: 394 FCTKEQMFNECLKIHNLIISIYKD-----FGFEKIMVKLSTRPEKRVGSDALWDDAENIM 448
F E +I + ++ I+ T E G
Sbjct: 108 FGEDG----EEASEFEELIELTEELLRALGIKLDIVFVEKTPGEFSPG------------ 151
Query: 449 KGVLDTIKNSSQDRINTGVLLGEGAFYGPKFEYILKDAIGRDWQCGTIQVDFNLPSR-FN 507
GP FE + GR + G+ + +R +
Sbjct: 152 -------------------------GAGPGFEIEVDHPEGRGLEIGSGGYRQDEQARAAD 186
Query: 508 AFYVNSHSEKCHPVMIHRAVFGSIERF 534
++++ E +P I +ER
Sbjct: 187 LYFLDEALEYRYPPTIGFG--LGLERL 211
|
Class II amino acyl-tRNA synthetases (aaRS) share a common fold and generally attach an amino acid to the 3' OH of ribose of the appropriate tRNA. PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. These enzymes are usually homodimers. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. The substrate specificity of this reaction is further determined by additional domains. Intererestingly, this domain is also found is asparagine synthase A (AsnA), in the accessory subunit of mitochondrial polymerase gamma and in the bacterial ATP phosphoribosyltransferase regulatory subunit HisZ.. Length = 211 |
| >gnl|CDD|36850 KOG1637, KOG1637, KOG1637, Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 75.4 bits (185), Expect = 5e-14
Identities = 52/201 (25%), Positives = 86/201 (42%), Gaps = 18/201 (8%)
Query: 5 IKLTFPDGSIKNFPV-HATGSDVAESISRSLAKKAVAVAINGKVCDLSDPVREGSIEIIT 63
I + PDG + T D+A S+ LA AV +NG + DL P+ +E++
Sbjct: 1 IIIVLPDGKVVEGVSWETTPYDIACQ-SKGLADDAVIAKVNGVLWDLDRPLEGDCLELLK 59
Query: 64 PEDPRSLAVIRHSCAHIMAEAVQSIWPEVQVAIGPIIEDGFYYDFDKEQPFSSDELAQIE 123
+D V HS AH++ EA++ + + IGP IE+GFYYD E SS++ IE
Sbjct: 60 FDDDEGKDVFWHSSAHVLGEALEQEYG-AHLCIGPPIEEGFYYDMLDE--ISSNDFPSIE 116
Query: 124 ----------KKMQEIIARDSPFLKQYLSHEKARELFESKKEAYKVEILESIPAKENVTL 173
K + + + + K + +E +E K I ++ +
Sbjct: 117 APHIRHTGKIKAFKILKNSSAYWEGDSFPDPKQLKEWEKFQEEAKKRDHRKIGKEQELFF 176
Query: 174 YRQ---GEWFDLCRGPHVRST 191
+ + G F L G + +T
Sbjct: 177 FHELSPGSCFFLPHGTRIYNT 197
|
Length = 560 |
| >gnl|CDD|73229 cd00779, ProRS_core_prok, Prolyl-tRNA synthetase (ProRS) class II core catalytic domain | Back alignment and domain information |
|---|
Score = 69.0 bits (169), Expect = 4e-12
Identities = 48/189 (25%), Positives = 88/189 (46%), Gaps = 11/189 (5%)
Query: 240 ESEKRDHRKLAREMDLFHIAEDGSGVIFWHRKGWKIFQTLISYMRRKI-KDDYEEINTPQ 298
++E H+ L R I + SG+ W G ++ + + + +R ++ K +EI P
Sbjct: 1 DAEIISHKLLLR---AGFIRQTSSGLYSWLPLGLRVLKKIENIIREEMNKIGAQEILMPI 57
Query: 299 VLDQHLWQQSGHWDSYRANMFAVKCADDTIKDLRTFALKPMNCPGHVAVFNHGLKSYREL 358
+ LW++SG WD+Y + +K + F L P + + + +KSY++L
Sbjct: 58 LQPAELWKESGRWDAYGPELLRLKDRHG-----KEFLLGPTHEEVITDLVANEIKSYKQL 112
Query: 359 PVRLAEFGSVYRNEPSGSLHGLMRVRGFTQDDAHVFCT-KEQMFNECLKIHNLIISIYKD 417
P+ L + + +R+E GLMR R F DA+ F +E + K++ I+K
Sbjct: 113 PLNLYQIQTKFRDEIR-PRFGLMRGREFLMKDAYSFDIDEESLEETYEKMYQAYSRIFKR 171
Query: 418 FGFEKIMVK 426
G + V+
Sbjct: 172 LGLPFVKVE 180
|
ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from prokaryotes and from the mitochondria of eukaryotes.. Length = 255 |
| >gnl|CDD|29815 cd00770, SerRS_core, Seryl-tRNA synthetase (SerRS) class II core catalytic domain | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 1e-05
Identities = 39/189 (20%), Positives = 80/189 (42%), Gaps = 18/189 (9%)
Query: 240 ESEKRDHRKLAREMDL--FHIAEDGSGVIFWHRKGWKIF--QTLISYMRRK-IKDDYEEI 294
+ + +DH +L ++D+ F SG F++ KG + LI++ K + +
Sbjct: 15 DFKPKDHVELGEKLDILDFERGAKVSGSRFYYLKGDGALLERALINFALDFLTKRGFTPV 74
Query: 295 NTPQVLDQHLWQQSGHWDSYRANMFAVKCADDTIKDLRTFALKPMNCPGHVAVFNHGLKS 354
P ++ + + + +G + ++ V + L A P+ A+ +
Sbjct: 75 IPPFLVRKEVMEGTGQLPKFDEQLYKV---EGEDLYLIATAEVPLA-----ALHRDEILE 126
Query: 355 YRELPVRLAEFGSVYRNEPSGS----LHGLMRVRGFTQDDAHVFCTKEQMFNECLKIHNL 410
ELP++ A + +R E +GS GL RV F + + VF E+ + E ++ +
Sbjct: 127 EEELPLKYAGYSPCFRKE-AGSAGRDTRGLFRVHQFEKVEQFVFTKPEESWEELEELISN 185
Query: 411 IISIYKDFG 419
I ++ G
Sbjct: 186 AEEILQELG 194
|
SerRS is responsible for the attachment of serine to the 3' OH group of ribose of the appropriate tRNA. This domain It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. SerRS synthetase is a homodimer.. Length = 297 |
| >gnl|CDD|30521 COG0172, SerS, Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 3e-05
Identities = 38/198 (19%), Positives = 77/198 (38%), Gaps = 16/198 (8%)
Query: 240 ESEKRDHRKLAREMDL--FHIAEDGSGVIFWHRKGW--KIFQTLISYM-RRKIKDDYEEI 294
+ E +DH +L ++ L F A SG F+ KG ++ + LI +M K + E+
Sbjct: 137 DFEPKDHVELGEKLGLLDFERAAKVSGSRFYFYKGKGARLERALIQFMLDLHTKHGFTEV 196
Query: 295 NTPQVLDQHLWQQSGHWDSYRANMFAVKCADDTIKDLRTFALKPMNCPGHVAVFNHGLKS 354
P +++ +G + +++ V D L P + +
Sbjct: 197 LPPYLVNLESMFGTGQLPKFEEDLYKV-EDPD-------LYLIPTAEVPLTNLHRDEILD 248
Query: 355 YRELPVRLAEFGSVYRNEPSGS---LHGLMRVRGFTQDDAHVFCTKEQMFNECLKIHNLI 411
+LP++ + +R+E + GL+RV F + + V E+ E ++
Sbjct: 249 EEDLPIKYTAYSPCFRSEAGSAGKDTRGLIRVHQFDKVELVVITKPEESEEELEEMLGNA 308
Query: 412 ISIYKDFGFEKIMVKLST 429
+ ++ +V L T
Sbjct: 309 EEVLQELELPYRVVNLCT 326
|
Length = 429 |
| >gnl|CDD|129096 smart00863, tRNA_SAD, Threonyl and Alanyl tRNA synthetase second additional domain | Back alignment and domain information |
|---|
Score = 63.2 bits (155), Expect = 2e-10
Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 9/52 (17%)
Query: 171 VTLYRQGEWF-DLCRGPHVRSTGQVKKFFKLMKVAGAYWRGDSNRPMLSRIY 221
V + G++ +LC G HV +TG++ FK++ V+GAYW L RIY
Sbjct: 1 VRVVSIGDFDVELCGGTHVPNTGEI-GAFKILSVSGAYWG-------LQRIY 44
|
The catalytically active form of threonyl/alanyl tRNA synthetase is a dimer. Within the tRNA synthetase class II dimer, the bound tRNA interacts with both monomers making specific interactions with the catalytic domain, the C-terminal domain, and this SAD domain (the second additional domain). The second additional domain is comprised of a pair of perpendicularly orientated antiparallel beta sheets, of four and three strands, respectively, that surround a central alpha helix that forms the core of the domain. Length = 44 |
| >gnl|CDD|149189 pfam07973, tRNA_SAD, Threonyl and Alanyl tRNA synthetase second additional domain | Back alignment and domain information |
|---|
Score = 60.9 bits (149), Expect = 9e-10
Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 9/52 (17%)
Query: 171 VTLYRQGEWF-DLCRGPHVRSTGQVKKFFKLMKVAGAYWRGDSNRPMLSRIY 221
V + R G++ DLC G HV +TG++ FK++K GDS L RIY
Sbjct: 1 VRVVRIGDFDVDLCGGTHVPNTGEI-GAFKILK-------GDSKNKGLQRIY 44
|
The catalytically active from of threonyl/alanyl tRNA synthetase is a dimer. Within the tRNA synthetase class II dimer, the bound tRNA interacts with both monomers making specific interactions with the catalytic domain, the C-terminal domain, and this domain (the second additional domain). The second additional domain is comprised of a pair of perpendicularly orientated antiparallel beta sheets, of four and three strands, respectively, that surround a central alpha helix that forms the core of the domain. Length = 44 |
| >gnl|CDD|37535 KOG2324, KOG2324, KOG2324, Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 59.2 bits (143), Expect = 4e-09
Identities = 70/359 (19%), Positives = 133/359 (37%), Gaps = 60/359 (16%)
Query: 293 EINTPQVLDQHLWQQSGHWDSYRANMFAVKCADDTIKDLRTFALKPMNCPGHVAVF-NHG 351
+I+ P + + LW+++G WD+ + +F + + L P + A+ +
Sbjct: 73 KISLPILSSKELWEKTGRWDAMGSELFRLHDRKG-----KQMCLTPTHEEDITALMATYI 127
Query: 352 LKSYRELPVRLAEFGSVYRNEPSGSLHGLMRVRGFTQDDAHVFCTKE----QMFNECLKI 407
SY++LP+R+ + G +R+E GL+R R F D + F + E Q + +
Sbjct: 128 PLSYKQLPIRVYQIGRKFRDELRPRF-GLLRGREFLMKDMYSFDSDEETAQQTYQLVDQA 186
Query: 408 HNLIISIYKDFGFEKIMVKLSTRPEKRVGSDALWDDAENIMKGVLD----TIKNSSQDRI 463
++ I+K G + V + + G + I +D +
Sbjct: 187 YD---RIFKQLGLPFVKVWADS----------------GDIGGEVSHEFHLIHPVGEDTL 227
Query: 464 NT----GVLLGEGAFYGPKFEYILKDAIGRDWQCGTIQVD--FNL----PSRFNAFYVNS 513
+ G K K GR + +I+V F L NA +VN
Sbjct: 228 MSCPSCGYSKNSEDLDLSKIASCPKCNEGRLTKTKSIEVGHTFLLGTKYSKPLNAKFVNV 287
Query: 514 HSEKCHPVMIHRAVFG-SIERFIGIMIENFKGN----LPLWLSPIQAIVTTITSS----- 563
+ P +H +G + R + E + P ++P + +
Sbjct: 288 EGK---PEFLHMGCYGIGVTRLLAAAAEVLSDDKGLRWPSLIAPYKVCLIGPKKGSKSQR 344
Query: 564 AVEYAQEI--ANLLKSHHLSIETDFRNE-TINYKIREHSIKKIPIIIICGDKEASERSI 619
A E E+ + + H I D R E TI +I++ + IP +I+ G+ + +
Sbjct: 345 AQEVISELLNDEAVGNLHGEILLDDREELTIGKRIKDANRLGIPFVIVVGNSASWDNPE 403
|
Length = 457 |
| >gnl|CDD|179306 PRK01584, PRK01584, alanyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 52.1 bits (125), Expect = 5e-07
Identities = 32/130 (24%), Positives = 60/130 (46%), Gaps = 20/130 (15%)
Query: 75 HSCAHIMAEAVQSIWPE-VQVAIGPIIEDGFYYDFDKEQPFSSDELAQIEKKMQEIIARD 133
H+ H++ +A++ + + V+ I + +DF + + DE+ ++E + I D
Sbjct: 457 HTATHLLHKALRLVLGDHVRQKGSNITAERLRFDFSHPEKMTDDEIKKVEDIVNLQIKND 516
Query: 134 SPFLKQYLSHEKARE-----LFESKKEAYKVEILESIPAKENVTLYRQGEW-FDLCRGPH 187
K+ +S E+ARE LF K E + V +Y + ++C GPH
Sbjct: 517 LSVKKEVMSLEEAREKGAMALFGEKYE-------------DIVKVYEIDGFSKEVCGGPH 563
Query: 188 VRSTGQVKKF 197
V +TG++ F
Sbjct: 564 VENTGELGTF 573
|
Length = 594 |
| >gnl|CDD|32699 COG2872, COG2872, Predicted metal-dependent hydrolases related to alanyl-tRNA synthetase HxxxH domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 47.3 bits (112), Expect = 1e-05
Identities = 29/140 (20%), Positives = 56/140 (40%), Gaps = 12/140 (8%)
Query: 74 RHSCAHIMAEAVQSIWPEVQVAIGPIIEDGFYYDFDKEQPFSSDELAQIEKKMQEIIARD 133
H+ H+++ + ++ I ED DFD + DE+ ++E E++ +
Sbjct: 98 MHTALHLLSAVLYKVYG-ALTTGFEIGEDYARIDFD--GEDTEDEIEEVEALANELVKEN 154
Query: 134 SPFLKQYLSHEKARELFESKKEAYKVEILESIPAKENVTLYRQGEWFDL--CRGPHVRST 191
P + ++ E+A +L K + P E + D+ C G HV++T
Sbjct: 155 LPVIIYFIPREEAEKLPGLVKLK-----NKVPPDVEGKIRIVEIGDIDVQPCGGTHVKNT 209
Query: 192 GQVKKFF--KLMKVAGAYWR 209
G++ + K K R
Sbjct: 210 GEIGEIKILKTEKKGKGNRR 229
|
Length = 241 |
| >gnl|CDD|30363 COG0013, AlaS, Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 2e-05
Identities = 34/148 (22%), Positives = 67/148 (45%), Gaps = 21/148 (14%)
Query: 65 EDPRSLAVIRHSCAHIMAEAVQSIW-PEVQVAIGPIIEDGFYYDFDKEQPFSSDELAQIE 123
E+ R + H+ H++ A++ + V A + + +DF + +++EL +IE
Sbjct: 557 EERRRRLMRNHTATHLLHAALRKVLGDHVWQAGSLVDPEKLRFDFSHYKALTAEELKEIE 616
Query: 124 KKMQEIIARDSPFLKQYLSHEKARE-----LFESKKEAYKVEILESIPAKENVTLYRQGE 178
+ + EII + P + + ++A+ LF E Y + V + G+
Sbjct: 617 RLVNEIIRENLPVKTEEMDLDEAKAKGAMALFG---EKY----------GDEVRVVEIGD 663
Query: 179 W-FDLCRGPHVRSTGQVKKFFKLMKVAG 205
+ +LC G HV +TG + FK++ G
Sbjct: 664 FSVELCGGTHVSNTGDI-GLFKIISEEG 690
|
Length = 879 |
| >gnl|CDD|35409 KOG0188, KOG0188, KOG0188, Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 46.1 bits (109), Expect = 3e-05
Identities = 29/159 (18%), Positives = 66/159 (41%), Gaps = 18/159 (11%)
Query: 47 VCDLSDPVREG-SIEIITPEDPRSLAVIRHSCAHIMAEAVQSIWPEVQVAIGPIIEDGFY 105
+ L + G +E+ E+ R L + H+ H++ A++ + + D
Sbjct: 542 IGVLEGDLSVGDQVELHVDEERRQLIMRNHTATHLLNFALRQVLKGTDQKGSLVAPDKLR 601
Query: 106 YDFDKEQPFSSDELAQIEKKMQEIIARDSPFLKQYLSHEKARELFESKKEAYKVEILESI 165
+DF + + ++L ++E K+ E I +++P + L +A+ K+ L ++
Sbjct: 602 FDFSTKGALTKEQLKKVEDKINEFIQKNAPVYAKELPLAEAK----------KIPGLRAV 651
Query: 166 PAK---ENVTLYRQGEW----FDLCRGPHVRSTGQVKKF 197
+ + V + G + C G H+ +T + F
Sbjct: 652 FDEVYPDPVRVVSVGAGQLTSVEFCGGTHLTNTSHIGDF 690
|
Length = 895 |
| >gnl|CDD|181689 PRK09194, PRK09194, prolyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 48.9 bits (118), Expect = 4e-06
Identities = 35/110 (31%), Positives = 50/110 (45%), Gaps = 22/110 (20%)
Query: 293 EINTPQVLDQHLWQQSGHWDSYRANMFAVKCADDTIKDL--RTFALKPMNCPGHVAVFNH 350
E+ P + LWQ+SG W+ Y + +KD R F L P H V
Sbjct: 68 EVLMPALQPAELWQESGRWEEYGPELL-------RLKDRHGRDFVLGPT----HEEVITD 116
Query: 351 ----GLKSYRELPVRLAEFGSVYRNE--PSGSLHGLMRVRGFTQDDAHVF 394
+KSY++LP+ L + + +R+E P GLMR R F DA+ F
Sbjct: 117 LVRNEIKSYKQLPLNLYQIQTKFRDEIRPRF---GLMRGREFIMKDAYSF 163
|
Length = 565 |
| >gnl|CDD|178947 PRK00252, alaS, alanyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 40.5 bits (96), Expect = 0.001
Identities = 29/110 (26%), Positives = 49/110 (44%), Gaps = 30/110 (27%)
Query: 107 DFDKEQPFSSDELAQIEKKMQEIIARDSPFLKQYLSHEKARE-----LFESKKEAY--KV 159
DF + + +EL +IE + E I + P + +S E+A++ LF E Y +V
Sbjct: 586 DFSHFEALTPEELRKIEDLVNEKIRENLPVETEEMSIEEAKKMGAMALFG---EKYGDEV 642
Query: 160 EILE----SIPAKENVTLYRQGEWFDLCRGPHVRSTGQVKKFFKLMKVAG 205
++ SI +LC G HV +TG + FK++ +G
Sbjct: 643 RVVSIGDFSI---------------ELCGGTHVSNTGDI-GLFKIVSESG 676
|
Length = 865 |
Conserved Domains in CDD Database Detected by HHsearch
Original result of HHsearch against CDD database
| Identity | Alignment graph | Length | Definition | Probability |
| Target | 652 | threonyl-tRNA synthetase [Candidatus Liberibacter asiat | ||
| PRK12444 | 639 | threonyl-tRNA synthetase; Reviewed | 100.0 | |
| PRK04483 | 634 | threonyl-tRNA synthetase; Validated | 100.0 | |
| PRK03772 | 642 | threonyl-tRNA synthetase; Validated | 100.0 | |
| PRK00413 | 639 | thrS threonyl-tRNA synthetase; Reviewed | 100.0 | |
| KOG1637 | 560 | consensus | 100.0 | |
| PRK12304 | 604 | thrS threonyl-tRNA synthetase; Reviewed | 100.0 | |
| COG0441 | 589 | ThrS Threonyl-tRNA synthetase [Translation, ribosomal s | 100.0 | |
| PRK03991 | 613 | threonyl-tRNA synthetase; Validated | 100.0 | |
| PRK12305 | 576 | thrS threonyl-tRNA synthetase; Reviewed | 100.0 | |
| TIGR00418 | 595 | thrS threonyl-tRNA synthetase; InterPro: IPR002320 The | 100.0 | |
| cd00771 | 298 | ThrRS_core Threonyl-tRNA synthetase (ThrRS) class II co | 100.0 | |
| cd00778 | 261 | ProRS_core_arch_euk Prolyl-tRNA synthetase (ProRS) clas | 100.0 | |
| cd00779 | 255 | ProRS_core_prok Prolyl-tRNA synthetase (ProRS) class II | 100.0 | |
| cd00772 | 264 | ProRS_core Prolyl-tRNA synthetase (ProRS) class II core | 100.0 | |
| cd00770 | 297 | SerRS_core Seryl-tRNA synthetase (SerRS) class II core | 100.0 | |
| PRK05431 | 422 | seryl-tRNA synthetase; Provisional | 99.89 | |
| PRK00960 | 516 | seryl-tRNA synthetase; Provisional | 99.28 | |
| TIGR00414 | 460 | serS seryl-tRNA synthetase; InterPro: IPR002317 The ami | 99.2 | |
| PRK07080 | 318 | hypothetical protein; Validated | 98.1 | |
| PRK12325 | 438 | prolyl-tRNA synthetase; Provisional | 100.0 | |
| PRK09194 | 570 | prolyl-tRNA synthetase; Provisional | 100.0 | |
| TIGR00409 | 620 | proS_fam_II prolyl-tRNA synthetase; InterPro: IPR004500 | 100.0 | |
| PRK08661 | 478 | prolyl-tRNA synthetase; Provisional | 100.0 | |
| COG0442 | 500 | ProS Prolyl-tRNA synthetase [Translation, ribosomal str | 100.0 | |
| TIGR00408 | 533 | proS_fam_I prolyl-tRNA synthetase; InterPro: IPR004499 | 100.0 | |
| KOG2324 | 457 | consensus | 100.0 | |
| PRK04173 | 460 | glycyl-tRNA synthetase; Provisional | 100.0 | |
| PRK00037 | 417 | hisS histidyl-tRNA synthetase; Reviewed | 100.0 | |
| TIGR00389 | 606 | glyS_dimeric glycyl-tRNA synthetase; InterPro: IPR00231 | 100.0 | |
| COG0423 | 558 | GRS1 Glycyl-tRNA synthetase (class II) [Translation, ri | 100.0 | |
| KOG2298 | 599 | consensus | 100.0 | |
| CHL00201 | 424 | syh histidine-tRNA synthetase; Provisional | 99.95 | |
| COG0124 | 429 | HisS Histidyl-tRNA synthetase [Translation, ribosomal s | 99.94 | |
| PRK12420 | 421 | histidyl-tRNA synthetase; Provisional | 99.91 | |
| TIGR00442 | 446 | hisS histidyl-tRNA synthetase; InterPro: IPR015807 The | 99.48 | |
| KOG4163 | 551 | consensus | 100.0 | |
| KOG1936 | 518 | consensus | 99.6 | |
| cd00670 | 235 | Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_tRNA s | 100.0 | |
| cd00768 | 211 | class_II_aaRS-like_core Class II tRNA amino-acyl synthe | 100.0 | |
| pfam00587 | 170 | tRNA-synt_2b tRNA synthetase class II core domain (G, H | 100.0 | |
| cd00774 | 254 | GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-like cla | 99.79 | |
| PRK12421 | 391 | ATP phosphoribosyltransferase regulatory subunit; Provi | 99.03 | |
| cd00773 | 261 | HisRS-like_core Class II Histidinyl-tRNA synthetase (Hi | 98.96 | |
| PRK12293 | 281 | hisZ ATP phosphoribosyltransferase regulatory subunit; | 98.91 | |
| PRK12295 | 373 | hisZ ATP phosphoribosyltransferase regulatory subunit; | 98.85 | |
| TIGR00459 | 653 | aspS_bact aspartyl-tRNA synthetase; InterPro: IPR004524 | 98.43 | |
| COG0173 | 585 | AspS Aspartyl-tRNA synthetase [Translation, ribosomal s | 98.41 | |
| TIGR00415 | 520 | serS_MJ seryl-tRNA synthetase; InterPro: IPR004503 The | 98.3 | |
| COG3705 | 390 | HisZ ATP phosphoribosyltransferase involved in histidin | 97.89 | |
| PRK04172 | 501 | pheS phenylalanyl-tRNA synthetase subunit alpha; Provis | 96.74 | |
| PTZ00326 | 505 | phenylalanyl-tRNA synthetase; Provisional | 96.6 | |
| cd00496 | 218 | PheRS_alpha_core Phenylalanyl-tRNA synthetase (PheRS) a | 95.51 | |
| cd00858 | 121 | GlyRS_anticodon GlyRS Glycyl-anticodon binding domain. | 99.95 | |
| cd00862 | 202 | ProRS_anticodon_zinc ProRS Prolyl-anticodon binding dom | 99.9 | |
| cd00861 | 94 | ProRS_anticodon_short ProRS Prolyl-anticodon binding do | 99.9 | |
| cd00860 | 91 | ThrRS_anticodon ThrRS Threonyl-anticodon binding domain | 99.9 | |
| cd00738 | 94 | HGTP_anticodon HGTP anticodon binding domain, as found | 99.89 | |
| cd02426 | 128 | Pol_gamma_b_Cterm C-terminal domain of mitochondrial DN | 99.8 | |
| pfam03129 | 93 | HGTP_anticodon Anticodon binding domain. This domain is | 99.8 | |
| cd00859 | 91 | HisRS_anticodon HisRS Histidyl-anticodon binding domain | 99.66 | |
| COG0172 | 429 | SerS Seryl-tRNA synthetase [Translation, ribosomal stru | 99.85 | |
| KOG2509 | 455 | consensus | 99.54 | |
| PRK12292 | 388 | hisZ ATP phosphoribosyltransferase regulatory subunit; | 99.63 | |
| COG0442 | 500 | ProS Prolyl-tRNA synthetase [Translation, ribosomal str | 99.6 | |
| PRK00252 | 864 | alaS alanyl-tRNA synthetase; Reviewed | 99.59 | |
| PRK13902 | 898 | alaS lanyl-tRNA synthetase; Provisional | 99.56 | |
| PRK01584 | 593 | alanyl-tRNA synthetase; Provisional | 99.53 | |
| COG2872 | 241 | Predicted metal-dependent hydrolases related to alanyl- | 98.99 | |
| TIGR00344 | 914 | alaS alanyl-tRNA synthetase; InterPro: IPR002318 The am | 97.94 | |
| KOG2105 | 415 | consensus | 96.15 | |
| COG0013 | 879 | AlaS Alanyl-tRNA synthetase [Translation, ribosomal str | 99.56 | |
| KOG0188 | 895 | consensus | 99.0 | |
| cd01667 | 61 | TGS_ThrRS_N TGS _ThrRS_N: ThrRS (threonyl-tRNA Syntheta | 99.53 | |
| pfam02824 | 60 | TGS TGS domain. The TGS domain is named after ThrRS, GT | 98.96 | |
| cd01616 | 60 | TGS The TGS domain, named after the ThrRS, GTPase, and | 98.87 | |
| cd01668 | 60 | TGS_RelA_SpoT TGS_RelA_SpoT: The RelA (SpoT) protein, a | 98.22 | |
| TIGR00691 | 741 | spoT_relA RelA/SpoT family protein; InterPro: IPR004811 | 97.57 | |
| PRK07440 | 70 | hypothetical protein; Provisional | 97.19 | |
| COG2104 | 68 | ThiS Sulfur transfer protein involved in thiamine biosy | 95.89 | |
| PRK05659 | 66 | sulfur carrier protein ThiS; Validated | 95.37 | |
| cd01669 | 76 | TGS_Ygr210_C TGS_Ygr210_C: The C-terminal TGS domain of | 95.34 | |
| PRK07696 | 67 | sulfur carrier protein ThiS; Provisional | 95.18 | |
| PRK06083 | 69 | sulfur carrier protein ThiS; Provisional | 94.94 | |
| PRK07569 | 236 | bidirectional hydrogenase complex protein HoxU; Validat | 94.68 | |
| PRK11840 | 327 | bifunctional sulfur carrier protein/thiazole synthase p | 94.29 | |
| PRK05863 | 65 | sulfur carrier protein ThiS; Provisional | 94.19 | |
| PRK06944 | 65 | sulfur carrier protein ThiS; Provisional | 94.02 | |
| PRK08053 | 66 | sulfur carrier protein ThiS; Provisional | 93.09 | |
| pfam02597 | 70 | ThiS ThiS family. ThiS (thiaminS) is a 66 aa protein in | 93.01 | |
| cd00565 | 65 | ThiS ThiS (ThiaminS) is a sulfur carrier protein involv | 92.87 | |
| PRK06488 | 65 | sulfur carrier protein ThiS; Validated | 92.82 | |
| TIGR01683 | 65 | thiS thiamine biosynthesis protein ThiS; InterPro: IPR0 | 91.64 | |
| smart00863 | 44 | tRNA_SAD Threonyl and Alanyl tRNA synthetase second add | 98.49 | |
| pfam07973 | 44 | tRNA_SAD Threonyl and Alanyl tRNA synthetase second add | 98.46 | |
| PRK12820 | 706 | bifunctional aspartyl-tRNA synthetase/aspartyl/glutamyl | 98.46 | |
| PRK09537 | 420 | pylS pyrolysyl-tRNA synthetase; Reviewed | 98.41 | |
| PRK00484 | 491 | lysS lysyl-tRNA synthetase; Reviewed | 98.41 | |
| PRK09350 | 325 | lysyl-tRNA synthetase; Provisional | 98.4 | |
| PRK05159 | 434 | aspC aspartyl-tRNA synthetase; Provisional | 98.2 | |
| cd00775 | 329 | LysRS_core Lys_tRNA synthetase (LysRS) class II core do | 98.16 | |
| PRK03932 | 462 | asnC asparaginyl-tRNA synthetase; Validated | 98.16 | |
| KOG2411 | 628 | consensus | 98.12 | |
| pfam00152 | 341 | tRNA-synt_2 tRNA synthetases class II (D, K and N). | 98.12 | |
| PRK02983 | 1099 | lysS lysyl-tRNA synthetase; Provisional | 98.08 | |
| PRK00476 | 587 | aspS aspartyl-tRNA synthetase; Validated | 98.05 | |
| PRK12445 | 505 | lysyl-tRNA synthetase; Reviewed | 98.03 | |
| cd00776 | 322 | AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class II c | 97.93 | |
| cd00669 | 269 | Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase class I | 97.91 | |
| cd00777 | 280 | AspRS_core Asp tRNA synthetase (aspRS) class II core do | 97.88 | |
| COG2269 | 322 | Truncated, possibly inactive, lysyl-tRNA synthetase (cl | 97.69 | |
| TIGR02367 | 453 | PylS pyrrolysyl-tRNA synthetase; InterPro: IPR012739 Py | 97.58 | |
| COG1190 | 502 | LysU Lysyl-tRNA synthetase (class II) [Translation, rib | 96.84 | |
| COG0017 | 435 | AsnS Aspartyl/asparaginyl-tRNA synthetases [Translation | 96.73 | |
| KOG1885 | 560 | consensus | 96.24 | |
| TIGR00462 | 330 | genX lysyl-tRNA synthetase homolog GenX; InterPro: IPR0 | 94.98 | |
| TIGR00471 | 605 | pheT_arch phenylalanyl-tRNA synthetase, beta subunit; I | 93.84 | |
| pfam01409 | 243 | tRNA-synt_2d tRNA synthetases class II core domain (F). | 91.07 | |
| PRK10872 | 743 | relA GDP/GTP pyrophosphokinase; Provisional | 98.18 | |
| PRK11092 | 702 | bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bi | 98.13 | |
| COG0317 | 701 | SpoT Guanosine polyphosphate pyrophosphohydrolases/synt | 98.04 | |
| PRK06462 | 332 | asparagine synthetase A; Reviewed | 97.79 | |
| COG0016 | 335 | PheS Phenylalanyl-tRNA synthetase alpha subunit [Transl | 95.98 | |
| PRK06253 | 527 | O-phosphoseryl-tRNA synthetase; Reviewed | 95.64 | |
| TIGR00457 | 495 | asnS asparaginyl-tRNA synthetase; InterPro: IPR004522 T | 95.52 | |
| cd00769 | 198 | PheRS_beta_core Phenylalanyl-tRNA synthetase (PheRS) be | 92.29 | |
| PRK09616 | 546 | pheT phenylalanyl-tRNA synthetase subunit beta; Reviewe | 91.45 |
| >PRK12444 threonyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=0 Score=1706.12 Aligned_cols=632 Identities=45% Similarity=0.830 Sum_probs=618.6 Q ss_pred CCC-CEEEECCCCCEEECCCCCCHHHHHHHHCCCCCCCEEEEEECCEEEECCEEEC-CCEEEEECCCCHHHHHHHHHHHH Q ss_conf 988-7089928998874189888999998636110112899998988997745303-67079862899999999999899 Q gi|254781004|r 1 MPS-DIKLTFPDGSIKNFPVHATGSDVAESISRSLAKKAVAVAINGKVCDLSDPVR-EGSIEIITPEDPRSLAVIRHSCA 78 (652) Q Consensus 1 M~~-~i~I~lpDG~~~~~~~g~t~~dia~~i~~~~~~~~vaa~vng~l~dL~~~l~-d~~i~~i~~~~~eg~~i~~hS~a 78 (652) T Consensus 1 m~~~mi~ItLpDGs~~e~~~~~t~~~iA~~I~~~Lak~avaa~vng~l~Dl~~~i~~d~~le~it~~~~eg~~v~rHS~A 80 (639) T PRK12444 1 MKEQMIEIKFPDGSVKEFVKGITLEEIAGSISSSLKKKAVAGKVNDELYDLRRNIEENAEVEIITIDSNEGVEIARHSAA 80 (639) T ss_pred CCCCCEEEECCCCCEEECCCCCCHHHHHHHHCHHHHHHEEEEEECCEEEECCCCCCCCCEEEEECCCCHHHHHHHHHHHH T ss_conf 98776079828998456789999999999877666656289998999972785168997899955899778999988899 Q ss_pred HHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCCCHHH Q ss_conf 99999999977998899724358855788408888889899999999999996699804853276785445441671135 Q gi|254781004|r 79 HIMAEAVQSIWPEVQVAIGPIIEDGFYYDFDKEQPFSSDELAQIEKKMQEIIARDSPFLKQYLSHEKARELFESKKEAYK 158 (652) Q Consensus 79 hlL~~Av~~l~p~~kl~igp~i~~GfYyD~~~~~~it~~dl~~Ie~~M~~ii~~~~pi~r~~vs~~eA~~~F~~~~~~~K 158 (652) T Consensus 81 Hvla~Av~~l~p~~kl~iGP~ie~GFYYDf~~~~~~t~~Dl~~IE~~M~~iik~~~~f~r~~~s~~eA~~~f~~~~~~yK 160 (639) T PRK12444 81 HILAQAVKRLYGDVNLGVGPVIENGFYYDMDLPSSVNVEDLRKIEKEMKKIINENIKIERVEVSREEAAKLFQEMNDRLK 160 (639) T ss_pred HHHHHHHHHHCCCCEEEECCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHCCCHHH T ss_conf 99999999977996388789888832475346999998999999999999873789749998589999999986384777 Q ss_pred HHHHHHCCCCCCCEEECCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEECCHHHHHHHHHHH Q ss_conf 56654203455421302575201000235521444222333333211101577564206899999837988999999999 Q gi|254781004|r 159 VEILESIPAKENVTLYRQGEWFDLCRGPHVRSTGQVKKFFKLMKVAGAYWRGDSNRPMLSRIYGTAWNTQQELTQYLYFL 238 (652) Q Consensus 159 ~~li~~~~~~~~v~~y~~g~~~Dlc~GphvpsTg~ik~~fkL~~~sgayw~gd~~~~~l~Riyg~af~~~~~l~~~~~~~ 238 (652) T Consensus 161 ~eli~~~~~~~~is~Y~~g~f~DLCrGPHv~~t~~ika-fkL~~vsgAYWrGd~~n~~LqRIYG~af~~k~~L~~yl~~l 239 (639) T PRK12444 161 LELLEAIPSGESVTLYKQGEFVDLCRGPHLPSTGYLKA-FQLTHVSGAYWRGDSNNQVLQRIYGVAFSSQKELEEYLHFV 239 (639) T ss_pred HHHHHCCCCCCCEEEEEECCEEEECCCCCCCCCCCCEE-EEEEEEECCEECCCCCCCCEEEEEEEEECCHHHHHHHHHHH T ss_conf 78875178998432899489889668877787454407-89734002142788768221689999858857799999999 Q ss_pred HHHHHHHHHHHHHHCCEEEECCCCCCEEEEECCHHHHHHHHHHHHHHHH-HCCCEEEECCCCCCCCCCCCCCCCCCCCCC Q ss_conf 9753200887541144044226787435650107899999999999887-689638555432443100011210012555 Q gi|254781004|r 239 EESEKRDHRKLAREMDLFHIAEDGSGVIFWHRKGWKIFQTLISYMRRKI-KDDYEEINTPQVLDQHLWQQSGHWDSYRAN 317 (652) Q Consensus 239 eea~~rdHr~lg~~~~lf~~~~~~~G~~~wlP~G~~i~~~ie~~ir~~~-~~G~~eV~tP~l~~~~Lw~~SGh~~~y~~~ 317 (652) T Consensus 240 eEakkRDHRklGkel~LF~f~~~~pG~~fwlP~G~~i~~~le~~~r~~~~~~GY~eV~TP~i~~~~Lw~~SGH~~~Y~e~ 319 (639) T PRK12444 240 EEAAKRNHRKLGNELELFMFSEEAPGMPFYLPKGQIIRNELEAFLREIQKEYNYQEVRTPFMMNQELWERSGHWGHYKDN 319 (639) T ss_pred HHHHHCCHHHHHHHCCEEEECCCCCCCEEEECCHHHHHHHHHHHHHHHHHHCCCEEECCCEEEHHHHHHHCCHHHHHHHC T ss_conf 99886478876532272882277897447846786999999999999999839878228666215687616604333302 Q ss_pred CCEEECCCCCCCCCCEEEECCCCHHHHHHHHHHCCCCHHHCCHHHHHHEEEECCCCCCCCEEEEECCCCCCCCCEEECCH Q ss_conf 42010014567778237743431257777652012222310432000100012787645200010563533442101053 Q gi|254781004|r 318 MFAVKCADDTIKDLRTFALKPMNCPGHVAVFNHGLKSYRELPVRLAEFGSVYRNEPSGSLHGLMRVRGFTQDDAHVFCTK 397 (652) Q Consensus 318 mf~~~~~~~~~~~~~~~~LkPmncp~h~~i~~~~~~SYrdLPlrl~e~~~~~R~E~sg~l~GL~R~ReF~~~Dah~F~~~ 397 (652) T Consensus 320 Mf~~~------~d~~~~~lKPMNCP~H~~if~~~~rSYRdLPlR~aEfg~vhR~E~SG~L~GL~RVR~FtqDDAHIFct~ 393 (639) T PRK12444 320 MYFSE------VDNKSFALKPMNCPGHMLMFKNKLHSYRELPIRMCEFGQVHRHEFSGALNGLLRVRTFCQDDAHLFVTP 393 (639) T ss_pred CCCCC------CCCCEEECCCCCCHHHHHHHHCCCCCHHHCCHHHHHCCCEECCCCCCCCCCCCCCCCCCCCCCEEECCH T ss_conf 75545------454033126768588999986056214436522243364633778766457677889987982465388 Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 76788789999998876655213321000146531125860357789999999998502121256675205555554554 Q gi|254781004|r 398 EQMFNECLKIHNLIISIYKDFGFEKIMVKLSTRPEKRVGSDALWDDAENIMKGVLDTIKNSSQDRINTGVLLGEGAFYGP 477 (652) Q Consensus 398 eq~~~e~~~~~~~~~~v~~~~g~~~~~~~ls~~~~~~~g~~~~~~~ae~~l~~~l~~~~~~~~~~~~~~~~~g~~afygp 477 (652) T Consensus 394 dQi~~Ei~~~~~~~~~vy~~fGf~-~~~~LStrpek~~G~de~W~~Ae~~L~~aL~~~g------~~y~~~~GegAFYGP 466 (639) T PRK12444 394 EQIEDEIKSVMAQIDYVYKTFGFE-YEVELSTRPEDSMGDDKLWEQAEAALENVLQSLN------YKYRLNEGDGAFYGP 466 (639) T ss_pred HHHHHHHHHHHHHHHHHHHHCCCE-EEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCC------CCEEECCCCCCCCCC T ss_conf 999999999999999999747972-9998167863345888999999999999999749------975867686364032 Q ss_pred CCCCCHHHHCCCCCCCCCCCHHHHCCCCCCCEEEEECCCEEEEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEE Q ss_conf 32110021103310012110111022346741673179721379964034103789999999973870887337808999 Q gi|254781004|r 478 KFEYILKDAIGRDWQCGTIQVDFNLPSRFNAFYVNSHSEKCHPVMIHRAVFGSIERFIGIMIENFKGNLPLWLSPIQAIV 557 (652) Q Consensus 478 kid~~~~d~~gr~~~~~tiq~df~~p~~f~l~y~~~dg~~~~pvmihr~~~Gs~eR~ia~liE~~~g~~P~wLAP~QV~I 557 (652) T Consensus 467 KiD~~v~DalgR~wq~~TIQlDF~lPeRF~l~Y~~~dg~~~rPVmIHRAilGS~ERFigiLiEh~~G~fP~WLaP~Qv~I 546 (639) T PRK12444 467 KIDFHIKDALNRSHQCGTIQLDFQMPEKFDLNYIDEKNEKVRPVVIHRAVLGSLDRFLAILIEHFGGAFPAWVAPVQVKV 546 (639) T ss_pred EEEEEEEECCCCEEECCEEEEEECCHHHCCCEEECCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCEEEE T ss_conf 65689980788724512345520566335877787899825988999578777899999999972798985657200699 Q ss_pred EECCHH-HHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHCCCCEEEEECHHHHHCCCEEEEECCCCCEEEECHHH Q ss_conf 857966-8999999999999879889997589663676665543489889998742532581899988988663342999 Q gi|254781004|r 558 TTITSS-AVEYAQEIANLLKSHHLSIETDFRNETINYKIREHSIKKIPIIIICGDKEASERSIGIRRFGSTTTQKVSLLD 636 (652) Q Consensus 558 ipi~e~-~~eya~~i~~~L~~~girV~~Ddr~~~~G~Kir~a~l~giP~~ivIG~ke~e~~~Vtir~R~~~~~~~i~lee 636 (652) T Consensus 547 ipi~~~~~~~Ya~~v~~~L~~~giRv~vD~~~e~l~~KIR~a~~~kiPy~lVVGdkE~e~~~VsvR~r~~~~~~~~~~~~ 626 (639) T PRK12444 547 IPVSNAVHVQYADEVADKLAQAGVRVERDERDEKLGYKIREAQMQKIPYVLVIGDKEMENGAVNVRKYGEEKSEVVELDM 626 (639) T ss_pred EECCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEEEHHHHHCCEEEEEECCCCCCCEEEHHH T ss_conf 95377027999999999999789889998999977599998743389989998415653595899977887347067999 Q ss_pred HHHHHHHHCC Q ss_conf 9999987314 Q gi|254781004|r 637 AIPILTKESL 646 (652) Q Consensus 637 ~i~~l~~e~~ 646 (652) T Consensus 627 fi~~l~~ei~ 636 (639) T PRK12444 627 FVESIKEEIK 636 (639) T ss_pred HHHHHHHHHH T ss_conf 9999999997 |
|
| >PRK04483 threonyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=0 Score=1698.99 Aligned_cols=630 Identities=46% Similarity=0.899 Sum_probs=616.2 Q ss_pred CEEEECCCCCEEECCCCCCHHHHHHHHCCCCCCCEEEEEECCEEEECCEEEC-CCEEEEECCCCHHHHHHHHHHHHHHHH Q ss_conf 7089928998874189888999998636110112899998988997745303-670798628999999999998999999 Q gi|254781004|r 4 DIKLTFPDGSIKNFPVHATGSDVAESISRSLAKKAVAVAINGKVCDLSDPVR-EGSIEIITPEDPRSLAVIRHSCAHIMA 82 (652) Q Consensus 4 ~i~I~lpDG~~~~~~~g~t~~dia~~i~~~~~~~~vaa~vng~l~dL~~~l~-d~~i~~i~~~~~eg~~i~~hS~ahlL~ 82 (652) T Consensus 1 MI~ItLPDGs~ke~~~g~T~~dIA~~Is~~Lak~avaa~VNG~l~DL~~pL~~D~~leiiT~~d~egl~v~rHS~AHvla 80 (634) T PRK04483 1 MITITLPDGSRREFESPVSVMQVAQSIGAGLAKATIAGQVDGQLVDASDLIEHDASLRIITAKDAEGVEIIRHSCAHLVG 80 (634) T ss_pred CCEEECCCCCEEECCCCCCHHHHHHHHCHHHHHHHEEEEECCEEEECCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHH T ss_conf 96799089984777899999999998675666661899989999707850689978999569997899999999999999 Q ss_pred HHHHHHCCCCEEEEECCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCCCHHHHHHH Q ss_conf 99999779988997243588557884088888898999999999999966998048532767854454416711355665 Q gi|254781004|r 83 EAVQSIWPEVQVAIGPIIEDGFYYDFDKEQPFSSDELAQIEKKMQEIIARDSPFLKQYLSHEKARELFESKKEAYKVEIL 162 (652) Q Consensus 83 ~Av~~l~p~~kl~igp~i~~GfYyD~~~~~~it~~dl~~Ie~~M~~ii~~~~pi~r~~vs~~eA~~~F~~~~~~~K~~li 162 (652) T Consensus 81 ~Av~~l~p~~kl~iGP~ie~GFYYDf~~~~~~t~~Dl~~IE~~M~~iik~~~~~~r~~~s~~eA~~~f~~~~~~yK~eli 160 (634) T PRK04483 81 HAVKQLYPEVKMVIGPVIAEGFYYDIYSERPFTPEDMAAIEQRMQELIAQDYDVIKKVTPRAEVIEVFAQRGEEYKLRLI 160 (634) T ss_pred HHHHHHCCCCEEEECCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHCCCHHHHHHH T ss_conf 99999779975887897788445732689989988999999999998607787599980799999999876977878798 Q ss_pred HHCCCC-CCCEEECCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEECCHHHHHHHHHHHHHH Q ss_conf 420345-5421302575201000235521444222333333211101577564206899999837988999999999975 Q gi|254781004|r 163 ESIPAK-ENVTLYRQGEWFDLCRGPHVRSTGQVKKFFKLMKVAGAYWRGDSNRPMLSRIYGTAWNTQQELTQYLYFLEES 241 (652) Q Consensus 163 ~~~~~~-~~v~~y~~g~~~Dlc~GphvpsTg~ik~~fkL~~~sgayw~gd~~~~~l~Riyg~af~~~~~l~~~~~~~eea 241 (652) T Consensus 161 ~~~~~~~~~is~Y~~g~f~DLCrGPHv~~T~~ika-fkL~~vsgaYWrGd~~n~~LqRIYG~af~~k~~L~~yl~~~eEa 239 (634) T PRK04483 161 EDMSDDITAMGLYYHQEYVDMCRGPHVPNTRFLKA-FKLTRISGAYWRGDAKNEQLQRIYGTAWADKKQLDAYILRMEEA 239 (634) T ss_pred HHCCCCCCEEEEEECCCEEEECCCCCCCCCCCCCH-HEEEEHHHHEECCCCCCCCEEEEEEEEECCHHHHHHHHHHHHHH T ss_conf 64488873588997388758379998897111311-12301102112688757102899999508989999999999998 Q ss_pred HHHHHHHHHHHCCEEEECCCCCCEEEEECCHHHHHHHHHHHHHHHH-HCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCE Q ss_conf 3200887541144044226787435650107899999999999887-689638555432443100011210012555420 Q gi|254781004|r 242 EKRDHRKLAREMDLFHIAEDGSGVIFWHRKGWKIFQTLISYMRRKI-KDDYEEINTPQVLDQHLWQQSGHWDSYRANMFA 320 (652) Q Consensus 242 ~~rdHr~lg~~~~lf~~~~~~~G~~~wlP~G~~i~~~ie~~ir~~~-~~G~~eV~tP~l~~~~Lw~~SGh~~~y~~~mf~ 320 (652) T Consensus 240 kkRDHRklGkel~LF~f~~~~pG~~~wlP~G~~i~~~le~~~r~~~~~~Gy~eV~tP~i~~~~Lw~~SGH~~~Y~e~Mf~ 319 (634) T PRK04483 240 DKRDHRKIGKAQDLFHLQEEAPGLVFWHPKGWSLWQVVEQYMRKVYRDSGYGEVRCPQILDVSLWQKSGHWDNYQDAMFF 319 (634) T ss_pred HHCCHHHHHHHCCEEEECCCCCCCEEECCCHHHHHHHHHHHHHHHHHHCCCEEEECCEECCHHHHHHCCCHHHHHHCCCE T ss_conf 86588887542110673377886438816689999999999999999829959988625137787625616455303713 Q ss_pred EECCCCCCCCCCEEEECCCCHHHHHHHHHHCCCCHHHCCHHHHHHEEEECCCCCCCCEEEEECCCCCCCCCEEECCHHHH Q ss_conf 10014567778237743431257777652012222310432000100012787645200010563533442101053767 Q gi|254781004|r 321 VKCADDTIKDLRTFALKPMNCPGHVAVFNHGLKSYRELPVRLAEFGSVYRNEPSGSLHGLMRVRGFTQDDAHVFCTKEQM 400 (652) Q Consensus 321 ~~~~~~~~~~~~~~~LkPmncp~h~~i~~~~~~SYrdLPlrl~e~~~~~R~E~sg~l~GL~R~ReF~~~Dah~F~~~eq~ 400 (652) T Consensus 320 ~------~~~~~~~~lKPMNCP~H~~if~~~~rSYRdLPlR~aE~g~~~R~E~SG~L~GL~RvR~FtqdDaHIFc~~dQi 393 (634) T PRK04483 320 T------ESEKRTYAVKPMNCPGHVQVFNQGLHSYRDLPIRYGEFGACHRNEPSGALHGILRVRGFTQDDGHVFCLESQI 393 (634) T ss_pred E------CCCCCEEEECCCCCHHHHHHHHCCCCCHHHCCHHHHHCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCHHHH T ss_conf 4------2554035515768564879987177444434366554330220567765457456889988983356389999 Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 88789999998876655213321000146531125860357789999999998502121256675205555554554321 Q gi|254781004|r 401 FNECLKIHNLIISIYKDFGFEKIMVKLSTRPEKRVGSDALWDDAENIMKGVLDTIKNSSQDRINTGVLLGEGAFYGPKFE 480 (652) Q Consensus 401 ~~e~~~~~~~~~~v~~~~g~~~~~~~ls~~~~~~~g~~~~~~~ae~~l~~~l~~~~~~~~~~~~~~~~~g~~afygpkid 480 (652) T Consensus 394 ~~Ei~~~l~~~~~vy~~fGf~~~~~~lStrpek~~G~~~~W~~AE~~L~~al~~~g------~~y~~~~GegAFYGPKID 467 (634) T PRK04483 394 EAEVTAFHQQALAVYTAFGFDDIQIKIALRPEKRLGDDATWDKAEAALRSALGVCG------VEWQELPGEGAFYGPKIE 467 (634) T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCC------CCCEECCCCCCEECCCEE T ss_conf 99999999999999986399538999635762345875568899999999999749------870776797010566228 Q ss_pred CCHHHHCCCCCCCCCCCHHHHCCCCCCCEEEEECCCEEEEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEC Q ss_conf 10021103310012110111022346741673179721379964034103789999999973870887337808999857 Q gi|254781004|r 481 YILKDAIGRDWQCGTIQVDFNLPSRFNAFYVNSHSEKCHPVMIHRAVFGSIERFIGIMIENFKGNLPLWLSPIQAIVTTI 560 (652) Q Consensus 481 ~~~~d~~gr~~~~~tiq~df~~p~~f~l~y~~~dg~~~~pvmihr~~~Gs~eR~ia~liE~~~g~~P~wLAP~QV~Iipi 560 (652) T Consensus 468 ~~v~DalgR~~q~~TiQlDf~lP~rF~l~Y~~~dg~~~rPvmIHRAilGS~ERfi~iLiEh~~G~fP~WLaP~Qv~iipv 547 (634) T PRK04483 468 YHLKDAIGRTWQLGTMQVDFMMPGRLGAEYVDENSQKKHPVMLHRAIVGSMERFIGILIEHHAGAFPAWLAPVQVVVANI 547 (634) T ss_pred EEEEECCCCEEECCEEEEECCCCCCCCCEEECCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCEEEEEEC T ss_conf 99992799867411457621453436778985689838608999457677899999999973798985768735899955 Q ss_pred CHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHCCCCEEEEECHHHHHCCCEEEEECCCCCEEEECHHHHHHH Q ss_conf 96689999999999998798899975896636766655434898899987425325818999889886633429999999 Q gi|254781004|r 561 TSSAVEYAQEIANLLKSHHLSIETDFRNETINYKIREHSIKKIPIIIICGDKEASERSIGIRRFGSTTTQKVSLLDAIPI 640 (652) Q Consensus 561 ~e~~~eya~~i~~~L~~~girV~~Ddr~~~~G~Kir~a~l~giP~~ivIG~ke~e~~~Vtir~R~~~~~~~i~lee~i~~ 640 (652) T Consensus 548 ~~~~~~ya~~v~~~L~~~g~rv~vD~~~e~lg~KIR~a~~~kiPy~lVvG~kE~e~~~VsvR~r~~~~~~~~~~~~fi~~ 627 (634) T PRK04483 548 TDAQAEYVDSVRKTLANQGFRVSADLRNEKIGYKIREHTLQRVPYLLVVGDREKENGAVAVRTRSGEDLGTMTVSAFIER 627 (634) T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECHHHHHCCEEEEEECCCCCCCEEEHHHHHHH T ss_conf 80489999999999997897899978998574999987433899899981256645978999778974571569999999 Q ss_pred HHHHCC Q ss_conf 987314 Q gi|254781004|r 641 LTKESL 646 (652) Q Consensus 641 l~~e~~ 646 (652) T Consensus 628 l~~e~a 633 (634) T PRK04483 628 LQAEQA 633 (634) T ss_pred HHHHHC T ss_conf 998762 |
|
| >PRK03772 threonyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=0 Score=1696.90 Aligned_cols=636 Identities=47% Similarity=0.903 Sum_probs=620.4 Q ss_pred CEEEECCCCCEEECCCCCCHHHHHHHHCCCCCCCEEEEEECCEEEECCEEEC-CCEEEEECCCCHHHHHHHHHHHHHHHH Q ss_conf 7089928998874189888999998636110112899998988997745303-670798628999999999998999999 Q gi|254781004|r 4 DIKLTFPDGSIKNFPVHATGSDVAESISRSLAKKAVAVAINGKVCDLSDPVR-EGSIEIITPEDPRSLAVIRHSCAHIMA 82 (652) Q Consensus 4 ~i~I~lpDG~~~~~~~g~t~~dia~~i~~~~~~~~vaa~vng~l~dL~~~l~-d~~i~~i~~~~~eg~~i~~hS~ahlL~ 82 (652) T Consensus 1 M~~ItLPDGs~~~~~~~~t~~dIA~~Is~~Lak~avaa~vng~l~Dl~~~i~~d~~le~it~~d~eg~~v~rHS~AHvla 80 (642) T PRK03772 1 MPVITLPDGSQRHFDHPVSPMDVALDIGPGLAKACIAGRVNGELVDACDLIENDAQLSIITAKDEEGLEIIRHSCAHLLG 80 (642) T ss_pred CCEEECCCCCEEECCCCCCHHHHHHHHCHHHHHHHEEEEECCEEEECCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHH T ss_conf 97798789983567899999999999786776662899989999866861579977999358997899999888999999 Q ss_pred HHHHHHCCCCEEEEECCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCCCHHHHHHH Q ss_conf 99999779988997243588557884088888898999999999999966998048532767854454416711355665 Q gi|254781004|r 83 EAVQSIWPEVQVAIGPIIEDGFYYDFDKEQPFSSDELAQIEKKMQEIIARDSPFLKQYLSHEKARELFESKKEAYKVEIL 162 (652) Q Consensus 83 ~Av~~l~p~~kl~igp~i~~GfYyD~~~~~~it~~dl~~Ie~~M~~ii~~~~pi~r~~vs~~eA~~~F~~~~~~~K~~li 162 (652) T Consensus 81 ~Av~~l~p~~kl~iGP~ie~GFYYDf~~~~~~t~~Dl~~IE~~M~~iik~~~~~~r~~~s~~eA~~~f~~~~~~yK~eli 160 (642) T PRK03772 81 HAIKQLWPHTKMAIGPVIDNGFYYDVDLDRTLTQEDLEALEKRMHELAKTNYDVIKKKVSWQEARDTFAARGESYKVAIL 160 (642) T ss_pred HHHHHHCCCCEEEECCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHCCCHHHHHHH T ss_conf 99999769967845786577157722479999989999999999999846998499996889999999852863554555 Q ss_pred H-HCCCCCCCEEECCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEECCHHHHHHHHHHHHHH Q ss_conf 4-203455421302575201000235521444222333333211101577564206899999837988999999999975 Q gi|254781004|r 163 E-SIPAKENVTLYRQGEWFDLCRGPHVRSTGQVKKFFKLMKVAGAYWRGDSNRPMLSRIYGTAWNTQQELTQYLYFLEES 241 (652) Q Consensus 163 ~-~~~~~~~v~~y~~g~~~Dlc~GphvpsTg~ik~~fkL~~~sgayw~gd~~~~~l~Riyg~af~~~~~l~~~~~~~eea 241 (652) T Consensus 161 ~e~~~~~~~is~Y~~g~f~DLCrGPHvp~t~~ika-fkl~~vagAYWrGd~~n~~LqRIYG~af~~k~~L~~~l~~~eEa 239 (642) T PRK03772 161 DENISHDDKPGLYHHEEYVDMCRGPHVPNMRFCHH-FKLMKTAGAYWRGDSNNKMLQRIYGTAWADKKALNAYLQRLEEA 239 (642) T ss_pred HHCCCCCCCEEEEECCCEEEECCCCCCCCCCCCCE-EEEEECCHHEECCCCCCCHHEEEEEEECCCHHHHHHHHHHHHHH T ss_conf 42277888267993598789558887787555532-57731232114777657000799998618989999999999999 Q ss_pred HHHHHHHHHHHCCEEEECCCCCCEEEEECCHHHHHHHHHHHHHHHH-HCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCE Q ss_conf 3200887541144044226787435650107899999999999887-689638555432443100011210012555420 Q gi|254781004|r 242 EKRDHRKLAREMDLFHIAEDGSGVIFWHRKGWKIFQTLISYMRRKI-KDDYEEINTPQVLDQHLWQQSGHWDSYRANMFA 320 (652) Q Consensus 242 ~~rdHr~lg~~~~lf~~~~~~~G~~~wlP~G~~i~~~ie~~ir~~~-~~G~~eV~tP~l~~~~Lw~~SGh~~~y~~~mf~ 320 (652) T Consensus 240 kkRDHRklGkel~LF~f~~~~pG~~fwlP~G~~i~~~le~~~r~~~~~~Gy~eV~TP~i~~~~Lw~~SGH~~~Y~e~Mf~ 319 (642) T PRK03772 240 AKRDHRKIGKQLDLYHMQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYADAMFT 319 (642) T ss_pred HHCCHHHHHHHCCCEEECCCCCCCEEECCCHHHHHHHHHHHHHHHHHHCCCEEEECCHHCCHHHHHHCCHHHHHHCCCCC T ss_conf 86588888775220475465887636658588999999999999999869859855432137788734447664103422 Q ss_pred EECCCCCCCCCCEEEECCCCHHHHHHHHHHCCCCHHHCCHHHHHHEEEECCCCCCCCEEEEECCCCCCCCCEEECCHHHH Q ss_conf 10014567778237743431257777652012222310432000100012787645200010563533442101053767 Q gi|254781004|r 321 VKCADDTIKDLRTFALKPMNCPGHVAVFNHGLKSYRELPVRLAEFGSVYRNEPSGSLHGLMRVRGFTQDDAHVFCTKEQM 400 (652) Q Consensus 321 ~~~~~~~~~~~~~~~LkPmncp~h~~i~~~~~~SYrdLPlrl~e~~~~~R~E~sg~l~GL~R~ReF~~~Dah~F~~~eq~ 400 (652) T Consensus 320 ~~~------e~~ey~lKPMNCP~H~~iy~~~~rSYRdLPlR~aEfg~~~R~E~SG~L~GL~RVR~FtqdDaHIFC~~dQi 393 (642) T PRK03772 320 TSS------ENREYAIKPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCTEEQI 393 (642) T ss_pred CCC------CHHHHCCCCCCCHHHHHHHHCCCCCHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEECCHHHH T ss_conf 342------01443046778734889986166434436545554113431666655347456889987884355378999 Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 88789999998876655213321000146531125860357789999999998502121256675205555554554321 Q gi|254781004|r 401 FNECLKIHNLIISIYKDFGFEKIMVKLSTRPEKRVGSDALWDDAENIMKGVLDTIKNSSQDRINTGVLLGEGAFYGPKFE 480 (652) Q Consensus 401 ~~e~~~~~~~~~~v~~~~g~~~~~~~ls~~~~~~~g~~~~~~~ae~~l~~~l~~~~~~~~~~~~~~~~~g~~afygpkid 480 (652) T Consensus 394 ~~Ei~~~l~~~~~vy~~fGf~~~~~~LStrpek~~G~~e~W~~AE~~L~~aL~~~g------~~y~~~~GegAFYGPKID 467 (642) T PRK03772 394 RDEVNSCIKMVYDMYSTFGFEKIVVKLSTRPEKRIGSDEMWDRAEADLAVALEENN------IPFEYQPGEGAFYGPKIE 467 (642) T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHCCCCHHHHHHHHHHHHHHHHHCC------CCEEECCCCCCCCCCCCC T ss_conf 99999999999999997398638999626822025888899999999999999739------970455676344455302 Q ss_pred CCHHHHCCCCCCCCCCCHHHHCCCCCCCEEEEECCCEEEEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEC Q ss_conf 10021103310012110111022346741673179721379964034103789999999973870887337808999857 Q gi|254781004|r 481 YILKDAIGRDWQCGTIQVDFNLPSRFNAFYVNSHSEKCHPVMIHRAVFGSIERFIGIMIENFKGNLPLWLSPIQAIVTTI 560 (652) Q Consensus 481 ~~~~d~~gr~~~~~tiq~df~~p~~f~l~y~~~dg~~~~pvmihr~~~Gs~eR~ia~liE~~~g~~P~wLAP~QV~Iipi 560 (652) T Consensus 468 ~~v~DalgR~wq~~TiQlDF~lP~RF~l~Y~~~dg~~~~PVmIHRAilGS~ERfiaiLiEh~~G~~P~WLaP~Qv~VipI 547 (642) T PRK03772 468 FTLYDCLDRAWQCGTVQLDFSLPGRLSASYVGEDNERKVPVMIHRAILGSMERFIGILTEEYAGFFPTWLAPVQVVVMNI 547 (642) T ss_pred EEEECCCCCEEEECCCEEECCCHHHCCCEEECCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCEEEEEEC T ss_conf 59970789768802324300135442888887899857858999246477899999999980799985647604799954 Q ss_pred CHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHCCCCEEEEECHHHHHCCCEEEEECCCCCEEEECHHHHHHH Q ss_conf 96689999999999998798899975896636766655434898899987425325818999889886633429999999 Q gi|254781004|r 561 TSSAVEYAQEIANLLKSHHLSIETDFRNETINYKIREHSIKKIPIIIICGDKEASERSIGIRRFGSTTTQKVSLLDAIPI 640 (652) Q Consensus 561 ~e~~~eya~~i~~~L~~~girV~~Ddr~~~~G~Kir~a~l~giP~~ivIG~ke~e~~~Vtir~R~~~~~~~i~lee~i~~ 640 (652) T Consensus 548 s~~~~~YA~~v~~~L~~~giRv~vD~~~e~l~~KIR~a~~~kiPy~lVvGdkE~~~~~VsvR~r~~~~~~~~~l~~fi~~ 627 (642) T PRK03772 548 TDSQSDYVQEVTKKLQNAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVEAGKVAVRTRRGKDLGSMDVNDFIEK 627 (642) T ss_pred CCHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEEEHHHHHCCEEEEEECCCCCCCEEEHHHHHHH T ss_conf 81589999999999997897899978998187999998761799899980246525958999778973571679999999 Q ss_pred HHHHCCCHHHCC Q ss_conf 987314356229 Q gi|254781004|r 641 LTKESLPPDCQK 652 (652) Q Consensus 641 l~~e~~~~d~~~ 652 (652) T Consensus 628 l~~ei~~r~l~~ 639 (642) T PRK03772 628 LQQEIRSRSLKQ 639 (642) T ss_pred HHHHHHHHHHHH T ss_conf 999998602544 |
|
| >PRK00413 thrS threonyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=0 Score=1691.63 Aligned_cols=631 Identities=54% Similarity=0.997 Sum_probs=618.4 Q ss_pred EEECCCCCEEECCCCCCHHHHHHHHCCCCCCCEEEEEECCEEEECCEEE-CCCEEEEECCCCHHHHHHHHHHHHHHHHHH Q ss_conf 8992899887418988899999863611011289999898899774530-367079862899999999999899999999 Q gi|254781004|r 6 KLTFPDGSIKNFPVHATGSDVAESISRSLAKKAVAVAINGKVCDLSDPV-REGSIEIITPEDPRSLAVIRHSCAHIMAEA 84 (652) Q Consensus 6 ~I~lpDG~~~~~~~g~t~~dia~~i~~~~~~~~vaa~vng~l~dL~~~l-~d~~i~~i~~~~~eg~~i~~hS~ahlL~~A 84 (652) T Consensus 1 tItlPDGs~~~~~~~~t~~~iA~~Is~~Lak~avaa~vng~l~Dl~~~l~~d~~leiit~~d~egl~v~rHS~AHvla~A 80 (639) T PRK00413 1 SITFPDGSVREFPKGVTAAEVAASISPSLAKKAVAGKVNGELVDLSTPIEEDATVEIVTADDEDGLEIIRHSAAHVLAQA 80 (639) T ss_pred CEECCCCCEEECCCCCCHHHHHHHHCHHHHHHHEEEEECCEEEECCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHH T ss_conf 96799998246789999999999979676656089998999974686058997899946999789999888899999999 Q ss_pred HHHHCCCCEEEEECCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCCCHHHHHHHHH Q ss_conf 99977998899724358855788408888889899999999999996699804853276785445441671135566542 Q gi|254781004|r 85 VQSIWPEVQVAIGPIIEDGFYYDFDKEQPFSSDELAQIEKKMQEIIARDSPFLKQYLSHEKARELFESKKEAYKVEILES 164 (652) Q Consensus 85 v~~l~p~~kl~igp~i~~GfYyD~~~~~~it~~dl~~Ie~~M~~ii~~~~pi~r~~vs~~eA~~~F~~~~~~~K~~li~~ 164 (652) T Consensus 81 v~~l~p~~kl~iGP~ie~GFYYDf~~~~~it~~Dl~~IEk~M~~iik~~~~~~r~~vs~~eA~~~F~~~~~~yK~eli~~ 160 (639) T PRK00413 81 VQRLFPDAKLGIGPVIENGFYYDFDVEEPFTPEDLPAIEKEMKKIIKENLPFTREVVSREEALELFADIGEPYKLELIED 160 (639) T ss_pred HHHHCCCCEEEECCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCCCHHHHHHHHH T ss_conf 99977997787789757703672126998998999999999999984799849999189999999986186689999863 Q ss_pred CCCCCCCEEECCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEECCHHHHHHHHHHHHHHHHH Q ss_conf 03455421302575201000235521444222333333211101577564206899999837988999999999975320 Q gi|254781004|r 165 IPAKENVTLYRQGEWFDLCRGPHVRSTGQVKKFFKLMKVAGAYWRGDSNRPMLSRIYGTAWNTQQELTQYLYFLEESEKR 244 (652) Q Consensus 165 ~~~~~~v~~y~~g~~~Dlc~GphvpsTg~ik~~fkL~~~sgayw~gd~~~~~l~Riyg~af~~~~~l~~~~~~~eea~~r 244 (652) T Consensus 161 ~~~~~~is~Y~~g~f~DLCrGPHv~~t~~ika-fKL~~vsgaYWrGd~~n~~LqRIYG~af~~k~~L~~~l~~~eEakkR 239 (639) T PRK00413 161 IPEGEEITIYRQGEFVDLCRGPHVPSTGKIKA-FKLLKVAGAYWRGDSKNEMLQRIYGTAWADKEDLDAYLHRLEEAEKR 239 (639) T ss_pred CCCCCCEEEEEECCEEEECCCCCCCCCCCCCE-EEEEECCHHHCCCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHC T ss_conf 67998579999155789668887765220445-78753141110788667303899998519989999999999998852 Q ss_pred HHHHHHHHCCEEEECCCCCCEEEEECCHHHHHHHHHHHHHHHH-HCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEC Q ss_conf 0887541144044226787435650107899999999999887-689638555432443100011210012555420100 Q gi|254781004|r 245 DHRKLAREMDLFHIAEDGSGVIFWHRKGWKIFQTLISYMRRKI-KDDYEEINTPQVLDQHLWQQSGHWDSYRANMFAVKC 323 (652) Q Consensus 245 dHr~lg~~~~lf~~~~~~~G~~~wlP~G~~i~~~ie~~ir~~~-~~G~~eV~tP~l~~~~Lw~~SGh~~~y~~~mf~~~~ 323 (652) T Consensus 240 DHRklGkel~LF~f~~~~pGl~~w~P~G~~i~~~le~~~r~~~~~~Gy~eV~TP~i~~~~Lw~~SGHw~~Y~e~Mf~~~~ 319 (639) T PRK00413 240 DHRKLGKELDLFSFQEEGPGLPFWHPKGWIIRNELEDYMRRRHLKAGYQEVNTPHILDRSLWETSGHWDHYRENMFPTMS 319 (639) T ss_pred CHHHHHHHCCCEEECCCCCCCEEECCCHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHCCCHHHHCCCCCCCEE T ss_conf 88888774351570366887646637689999999999999999869859836413468899654742232254223240 Q ss_pred CCCCCCCCCEEEECCCCHHHHHHHHHHCCCCHHHCCHHHHHHEEEECCCCCCCCEEEEECCCCCCCCCEEECCHHHHHHH Q ss_conf 14567778237743431257777652012222310432000100012787645200010563533442101053767887 Q gi|254781004|r 324 ADDTIKDLRTFALKPMNCPGHVAVFNHGLKSYRELPVRLAEFGSVYRNEPSGSLHGLMRVRGFTQDDAHVFCTKEQMFNE 403 (652) Q Consensus 324 ~~~~~~~~~~~~LkPmncp~h~~i~~~~~~SYrdLPlrl~e~~~~~R~E~sg~l~GL~R~ReF~~~Dah~F~~~eq~~~e 403 (652) T Consensus 320 -----~~~~~~~lKPMNCP~H~~if~~~~~SYRdLPlR~aEfg~~~R~E~SG~L~GL~RvR~FtqdDaHIFc~~dQi~~E 394 (639) T PRK00413 320 -----DDGEDYALKPMNCPGHILIFKSGLRSYRELPLRLAEFGTVHRYEKSGALHGLMRVRGFTQDDAHIFCTPEQIKDE 394 (639) T ss_pred -----CCCCEEEECCCCCCCHHHHHHCCCCCHHHCCHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCEEECCHHHHHHH T ss_conf -----152103204668700335644355355547556664113205677874456423300001584132478999999 Q ss_pred HHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCH Q ss_conf 89999998876655213321000146531125860357789999999998502121256675205555554554321100 Q gi|254781004|r 404 CLKIHNLIISIYKDFGFEKIMVKLSTRPEKRVGSDALWDDAENIMKGVLDTIKNSSQDRINTGVLLGEGAFYGPKFEYIL 483 (652) Q Consensus 404 ~~~~~~~~~~v~~~~g~~~~~~~ls~~~~~~~g~~~~~~~ae~~l~~~l~~~~~~~~~~~~~~~~~g~~afygpkid~~~ 483 (652) T Consensus 395 i~~~l~~~~~vy~~fGf~~~~~~lStrpek~~g~~e~W~~Ae~~L~~al~~~g------~~y~~~~GegAFYGPKID~~~ 468 (639) T PRK00413 395 LLSVLDLILSVYKDFGLTDYYLELSTRPEKRVGSDELWEKATEALREALEESG------LEYVENPGEGAFYGPKIDVQL 468 (639) T ss_pred HHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCC------CCEEECCCCCCEECCEEEEEE T ss_conf 99999999999997499803899964751135888999999999999999749------980878886111101667785 Q ss_pred HHHCCCCCCCCCCCHHHHCCCCCCCEEEEECCCEEEEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCHH Q ss_conf 21103310012110111022346741673179721379964034103789999999973870887337808999857966 Q gi|254781004|r 484 KDAIGRDWQCGTIQVDFNLPSRFNAFYVNSHSEKCHPVMIHRAVFGSIERFIGIMIENFKGNLPLWLSPIQAIVTTITSS 563 (652) Q Consensus 484 ~d~~gr~~~~~tiq~df~~p~~f~l~y~~~dg~~~~pvmihr~~~Gs~eR~ia~liE~~~g~~P~wLAP~QV~Iipi~e~ 563 (652) T Consensus 469 ~DalgR~wq~~TiQlDf~lPerF~l~Y~~~dg~~~~PVmIHRAi~GS~ERfiaiLiEh~~G~~P~WLaP~Qv~IipV~~~ 548 (639) T PRK00413 469 KDAIGRTWQCGTIQLDFNLPERFDLEYIAADGEKHRPVMIHRAIFGSIERFIGILIEHYAGAFPLWLAPVQVVVIPITDE 548 (639) T ss_pred ECCCCCEEECCHHHHHHCCHHHCCCEEECCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCHH T ss_conf 14468713200233222245424888998889816308999525565899999999980898873657615899961847 Q ss_pred HHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHCCCCEEEEECHHHHHCCCEEEEECCCCCEEEECHHHHHHHHHH Q ss_conf 89999999999998798899975896636766655434898899987425325818999889886633429999999987 Q gi|254781004|r 564 AVEYAQEIANLLKSHHLSIETDFRNETINYKIREHSIKKIPIIIICGDKEASERSIGIRRFGSTTTQKVSLLDAIPILTK 643 (652) Q Consensus 564 ~~eya~~i~~~L~~~girV~~Ddr~~~~G~Kir~a~l~giP~~ivIG~ke~e~~~Vtir~R~~~~~~~i~lee~i~~l~~ 643 (652) T Consensus 549 ~~~ya~~v~~~l~~~giRv~vD~~~e~l~~KIR~a~~~kiPy~~VvGdkE~~~~~VsvR~r~~~~~~~~~~~efi~~l~~ 628 (639) T PRK00413 549 HADYAKEVAKALRDAGIRVEVDLRNEKIGYKIREAQLQKVPYMLVVGDKEVEAGTVSVRRRGGGDLGTMPVDEFVEKIKE 628 (639) T ss_pred HHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEEEHHHHHCCEEEEEECCCCCCCEEEHHHHHHHHHH T ss_conf 89999999999997898899978998575999998653799899980036535958999778972465689999999999 Q ss_pred HCCCH Q ss_conf 31435 Q gi|254781004|r 644 ESLPP 648 (652) Q Consensus 644 e~~~~ 648 (652) T Consensus 629 ei~~r 633 (639) T PRK00413 629 EIARR 633 (639) T ss_pred HHHHH T ss_conf 99875 |
|
| >KOG1637 consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=0 Score=1142.08 Aligned_cols=546 Identities=39% Similarity=0.737 Sum_probs=524.1 Q ss_pred EEECCCCCEEE-CCCCCCHHHHHHHHCCCCCCCEEEEEECCEEEECCEEEC-CCEEEEECCCCHHHHHHHHHHHHHHHHH Q ss_conf 89928998874-189888999998636110112899998988997745303-6707986289999999999989999999 Q gi|254781004|r 6 KLTFPDGSIKN-FPVHATGSDVAESISRSLAKKAVAVAINGKVCDLSDPVR-EGSIEIITPEDPRSLAVIRHSCAHIMAE 83 (652) Q Consensus 6 ~I~lpDG~~~~-~~~g~t~~dia~~i~~~~~~~~vaa~vng~l~dL~~~l~-d~~i~~i~~~~~eg~~i~~hS~ahlL~~ 83 (652) T Consensus 2 ~~~Lpdg~~~~~~~w~ttp~~ia~~-s~~la~~~~~~~vn~~~~Dl~rp~e~~~-lell~f~~~~~k~vfwhssahvlg~ 79 (560) T KOG1637 2 IIVLPDGKVVEGVSWETTPYDIACQ-SKGLADDAVIAKVNGVLWDLDRPLEGDC-LELLKFDDDEGKDVFWHSSAHVLGE 79 (560) T ss_pred EEECCCCCEEEEEECCCCHHHHHHH-CCCHHHHHHHHHHCCCEECCCCCCHHHH-HHHCCCCCCCCCEEEEEHHHHHHHH T ss_conf 0556885565112336784677641-0221666587762681312578550557-8870678723301244255667668 Q ss_pred HHHHHCCCCEEEEECCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCCCHHHHHHHH Q ss_conf 99997799889972435885578840888888989999999999999669980485327678544544167113556654 Q gi|254781004|r 84 AVQSIWPEVQVAIGPIIEDGFYYDFDKEQPFSSDELAQIEKKMQEIIARDSPFLKQYLSHEKARELFESKKEAYKVEILE 163 (652) Q Consensus 84 Av~~l~p~~kl~igp~i~~GfYyD~~~~~~it~~dl~~Ie~~M~~ii~~~~pi~r~~vs~~eA~~~F~~~~~~~K~~li~ 163 (652) T Consensus 80 a~e~~~g-~~lc~Gpp~~~gf~yd~-~-~~i~~~d~~~~e~--------------------------------------- 117 (560) T KOG1637 80 ALEQEYG-AHLCIGPPIEEGFYYDM-L-DEISSNDFPSIEA--------------------------------------- 117 (560) T ss_pred HHHHHCC-EEEEECCCCCCCEEHHH-H-CCCCCCCCCCCCC--------------------------------------- T ss_conf 8887608-46750798767530000-0-3335222542235--------------------------------------- Q ss_pred HCCCCCCCEEECCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEECCHHHHHHHHHHHHHHHH Q ss_conf 20345542130257520100023552144422233333321110157756420689999983798899999999997532 Q gi|254781004|r 164 SIPAKENVTLYRQGEWFDLCRGPHVRSTGQVKKFFKLMKVAGAYWRGDSNRPMLSRIYGTAWNTQQELTQYLYFLEESEK 243 (652) Q Consensus 164 ~~~~~~~v~~y~~g~~~Dlc~GphvpsTg~ik~~fkL~~~sgayw~gd~~~~~l~Riyg~af~~~~~l~~~~~~~eea~~ 243 (652) T Consensus 118 ----------------------phi~~tg~ika-~k~~~nss~yw~~~------------sfp~~k~~k~~~~~~~Ea~~ 162 (560) T KOG1637 118 ----------------------PHIRHTGKIKA-FKILKNSSAYWEGD------------SFPDPKQLKEWEKFQEEAKK 162 (560) T ss_pred ----------------------CCCCCCCEEEE-EEEECCCHHHHCCC------------CCCCHHHHHHHHHHCHHHHH T ss_conf ----------------------55554340121-23303522333166------------68987899999864555441 Q ss_pred HHHHHHHHHCCEEEECCCCCCEEEEECCHHHHHHHHHHHHHHHHH-CCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEE Q ss_conf 008875411440442267874356501078999999999998876-8963855543244310001121001255542010 Q gi|254781004|r 244 RDHRKLAREMDLFHIAEDGSGVIFWHRKGWKIFQTLISYMRRKIK-DDYEEINTPQVLDQHLWQQSGHWDSYRANMFAVK 322 (652) Q Consensus 244 rdHr~lg~~~~lf~~~~~~~G~~~wlP~G~~i~~~ie~~ir~~~~-~G~~eV~tP~l~~~~Lw~~SGh~~~y~~~mf~~~ 322 (652) T Consensus 163 rdHRkig~~qeLfff~~lSPGS~FflP~G~~iyN~Lv~fir~ey~~rGf~EVitPniy~~~LWe~SGHwqnY~enmF~~e 242 (560) T KOG1637 163 RDHRKIGKEQELFFFHELSPGSCFFLPHGTRIYNTLVDFIRAEYRKRGFTEVITPNIYNKKLWETSGHWQNYSENMFKFE 242 (560) T ss_pred HHHHHHHHHHHHEEECCCCCCCEEECCCCCHHHHHHHHHHHHHHHHCCCCEECCCCHHHHHHHHHCCCHHHHHHHCEEEE T ss_conf 00555402222024135798624531486427889999999998753874322722121566653252555443101231 Q ss_pred CCCCCCCCCCEEEECCCCHHHHHHHHHHCCCCHHHCCHHHHHHEEEECCCCCCCCEEEEECCCCCCCCCEEECCHHHHHH Q ss_conf 01456777823774343125777765201222231043200010001278764520001056353344210105376788 Q gi|254781004|r 323 CADDTIKDLRTFALKPMNCPGHVAVFNHGLKSYRELPVRLAEFGSVYRNEPSGSLHGLMRVRGFTQDDAHVFCTKEQMFN 402 (652) Q Consensus 323 ~~~~~~~~~~~~~LkPmncp~h~~i~~~~~~SYrdLPlrl~e~~~~~R~E~sg~l~GL~R~ReF~~~Dah~F~~~eq~~~ 402 (652) T Consensus 243 ~------eke~~~LKPMNCPgHcLmf~~r~rS~reLPlR~aDFg~LHRnE~SGaLsGLTRvRrFqQDDaHIFCt~~Qi~~ 316 (560) T KOG1637 243 V------EKEEFALKPMNCPGHCLMFAHRDRSYRELPLRFADFGVLHRNEASGALSGLTRVRRFQQDDAHIFCTPDQVKE 316 (560) T ss_pred E------CHHHHCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCEEEECCCCCCCCCCCEEEEECCCCCEEEECCCCHHH T ss_conf 0------1033225866897530133667742744784226752253054564232210110110157158855763799 Q ss_pred HHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 78999999887665521332100014653112586035778999999999850212125667520555555455432110 Q gi|254781004|r 403 ECLKIHNLIISIYKDFGFEKIMVKLSTRPEKRVGSDALWDDAENIMKGVLDTIKNSSQDRINTGVLLGEGAFYGPKFEYI 482 (652) Q Consensus 403 e~~~~~~~~~~v~~~~g~~~~~~~ls~~~~~~~g~~~~~~~ae~~l~~~l~~~~~~~~~~~~~~~~~g~~afygpkid~~ 482 (652) T Consensus 317 Eik~~l~fl~~vY~~fgf~-f~l~lSTRPe~~lG~l~~Wd~AE~~L~~al~e~g~------pw~lN~GDGAFYGPKIDi~ 389 (560) T KOG1637 317 EIKGCLDFLDYVYGVFGFT-FKLNLSTRPEKFLGDLETWDEAEFKLEEALNESGE------PWVLNPGDGAFYGPKIDIT 389 (560) T ss_pred HHHHHHHHHHHHHHHCCCC-CEEEECCCHHHHCCCHHHHHHHHHHHHHHHHHHCC------CCEECCCCCCEECCEEEEE T ss_conf 9987999999998612542-02574167587665788899999999999997099------7142289853026433257 Q ss_pred HHHHCCCCCCCCCCCHHHHCCCCCCCEEEEECCCEEEEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCH Q ss_conf 02110331001211011102234674167317972137996403410378999999997387088733780899985796 Q gi|254781004|r 483 LKDAIGRDWQCGTIQVDFNLPSRFNAFYVNSHSEKCHPVMIHRAVFGSIERFIGIMIENFKGNLPLWLSPIQAIVTTITS 562 (652) Q Consensus 483 ~~d~~gr~~~~~tiq~df~~p~~f~l~y~~~dg~~~~pvmihr~~~Gs~eR~ia~liE~~~g~~P~wLAP~QV~Iipi~e 562 (652) T Consensus 390 l~Dal~r~hQcaTIQLDFqLP~rFdL~y~~~~g~~erPVmIHRAIlGSvERmiaiL~E~~~gkwPFWlSPRq~~vIpVse 469 (560) T KOG1637 390 LDDALGRKHQCATIQLDFQLPIRFDLEYETEDGDLERPVMIHRAILGSVERMIAILLESYGGKWPFWLSPRQAVVIPVSE 469 (560) T ss_pred HHHHCCCCCCEEEEEECCCCHHHCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCEEEEEECCC T ss_conf 24332761010256631367333175110466652312358998752199999999997079998445462389997787 Q ss_pred HHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHCCCCEEEEECHHHHHCCCEEEEECCCCC---EEEECHHHHHH Q ss_conf 689999999999998798899975896636766655434898899987425325818999889886---63342999999 Q gi|254781004|r 563 SAVEYAQEIANLLKSHHLSIETDFRNETINYKIREHSIKKIPIIIICGDKEASERSIGIRRFGSTT---TQKVSLLDAIP 639 (652) Q Consensus 563 ~~~eya~~i~~~L~~~girV~~Ddr~~~~G~Kir~a~l~giP~~ivIG~ke~e~~~Vtir~R~~~~---~~~i~lee~i~ 639 (652) T Consensus 470 ~~~~ya~~V~~ql~~a~f~~Dld~t~~tl~kkir~Aqla~yn~i~VVGdkE~~~~~vnVr~Rd~~~~~~~~~~tie~~~~ 549 (560) T KOG1637 470 GPLDYATSVQKQLEEAGFYVDLDPTDSTLRKKIRNAQLAHYNFIFVVGDKEVETGRVNVRTRDNRDNKTESEMTIEELSD 549 (560) T ss_pred CHHHHHHHHHHHHHHHHCEEECCCCCCHHHHHHHHHHHCCCEEEEEECHHHHHCCCEEEEECCCCCCCCCHHEEHHHHHH T ss_conf 40338999999998620066147763568888866232250299997545653274789943575543210232999999 Q ss_pred HHHH Q ss_conf 9987 Q gi|254781004|r 640 ILTK 643 (652) Q Consensus 640 ~l~~ 643 (652) T Consensus 550 ~~~~ 553 (560) T KOG1637 550 EFKE 553 (560) T ss_pred HHHH T ss_conf 9998 |
|
| >PRK12304 thrS threonyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=0 Score=1595.41 Aligned_cols=598 Identities=40% Similarity=0.761 Sum_probs=580.3 Q ss_pred CCCCEEEEEECCEEEECCEEE-CCCEEEEECCC-CHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECC Q ss_conf 011289999898899774530-36707986289-9999999999899999999999779988997243588557884088 Q gi|254781004|r 34 LAKKAVAVAINGKVCDLSDPV-REGSIEIITPE-DPRSLAVIRHSCAHIMAEAVQSIWPEVQVAIGPIIEDGFYYDFDKE 111 (652) Q Consensus 34 ~~~~~vaa~vng~l~dL~~~l-~d~~i~~i~~~-~~eg~~i~~hS~ahlL~~Av~~l~p~~kl~igp~i~~GfYyD~~~~ 111 (652) T Consensus 1 Lak~~va~~vng~l~Dl~~~~~~d~~~~~i~~~~s~eg~~v~rHS~AHvla~Av~~l~p~~k~~iGP~ie~GFYYDf~~~ 80 (604) T PRK12304 1 MSSELIAYKKDEQIIDLQSAKVLGNGGEPIYFDNSPEALEVIRHSCAHLMAQAIKSLYPDAKFFVGPVVEEGFYYDFRVE 80 (604) T ss_pred CCHHCEEEEECCEEEECCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCEEEEEECCC T ss_conf 93250899989999717876678964899826999789999998799999999999779976987897588115851569 Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCCCHHHHHHHHHCCCCCCCEEECCCCCEEECCCCCCCHH Q ss_conf 88889899999999999996699804853276785445441671135566542034554213025752010002355214 Q gi|254781004|r 112 QPFSSDELAQIEKKMQEIIARDSPFLKQYLSHEKARELFESKKEAYKVEILESIPAKENVTLYRQGEWFDLCRGPHVRST 191 (652) Q Consensus 112 ~~it~~dl~~Ie~~M~~ii~~~~pi~r~~vs~~eA~~~F~~~~~~~K~~li~~~~~~~~v~~y~~g~~~Dlc~GphvpsT 191 (652) T Consensus 81 ~~~t~~Dl~~IE~~M~~iik~~~~f~r~~~~~~eA~~~f~~--~~yK~eli~~~~~-~~is~Y~~g~f~DLCrGPHv~~T 157 (604) T PRK12304 81 SKIGEEDLPKIEKKMKELAKAKLEITKYEITKEEALEKFKN--DDLKQAVLSRIPD-DAVSIYKQGEFEDLCRGPHLPNT 157 (604) T ss_pred CCCCHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHCC--CCCCHHHHHCCCC-CCEEEEEECCEEEECCCCCCCCC T ss_conf 98998999999999999996899859999779999998605--8404588843678-85699984896686588766772 Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCC-CCCEEEEEC Q ss_conf 4422233333321110157756420689999983798899999999997532008875411440442267-874356501 Q gi|254781004|r 192 GQVKKFFKLMKVAGAYWRGDSNRPMLSRIYGTAWNTQQELTQYLYFLEESEKRDHRKLAREMDLFHIAED-GSGVIFWHR 270 (652) Q Consensus 192 g~ik~~fkL~~~sgayw~gd~~~~~l~Riyg~af~~~~~l~~~~~~~eea~~rdHr~lg~~~~lf~~~~~-~~G~~~wlP 270 (652) T Consensus 158 ~~ika-fKL~~vsgaYWrGd~~n~~LqRIYG~af~~k~~L~~~l~~~eEakkRDHRklGkel~LF~f~~~~g~G~~~wlP 236 (604) T PRK12304 158 KFLRF-FKLTRVAGAYLGGDEKNEMLTRIYGIAFADKESLKDYLFIIEEAKKRDHRKLGVEMKLFTFDDEIGAGLPIWLP 236 (604) T ss_pred CCCCE-EEEEECCCEEECCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCCHHHHHHHCCCEECCCCCCCCCEEECC T ss_conf 22626-79853375177578867103899998419999999999999999866788887745515625545887536837 Q ss_pred CHHHHHHHHHHHHHHHH-HCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCEEEECCCCHHHHHHHHH Q ss_conf 07899999999999887-68963855543244310001121001255542010014567778237743431257777652 Q gi|254781004|r 271 KGWKIFQTLISYMRRKI-KDDYEEINTPQVLDQHLWQQSGHWDSYRANMFAVKCADDTIKDLRTFALKPMNCPGHVAVFN 349 (652) Q Consensus 271 ~G~~i~~~ie~~ir~~~-~~G~~eV~tP~l~~~~Lw~~SGh~~~y~~~mf~~~~~~~~~~~~~~~~LkPmncp~h~~i~~ 349 (652) T Consensus 237 ~G~~i~~~le~~~r~~~~~~Gy~eV~TP~i~~~~Lw~~SGH~~~Y~e~Mf~~~------~d~~~y~lKPMNCP~H~~if~ 310 (604) T PRK12304 237 KGARLRSKLEHLLYKAHRLRGYEPVRGPEILKSDVWKISGHYANYKENMYFTT------IDEQEYGIKPMNCVGHIKVYQ 310 (604) T ss_pred CHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCHHHHHCCCHHHHHCCCCCEEE------CCCCEEECCCCCCHHHHHHHH T ss_conf 75499999999999999982996803865455888730551532105764450------577433036779574999986 Q ss_pred HCCCCHHHCCHHHHHHEEEECCCCCCCCEEEEECCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCC Q ss_conf 01222231043200010001278764520001056353344210105376788789999998876655213321000146 Q gi|254781004|r 350 HGLKSYRELPVRLAEFGSVYRNEPSGSLHGLMRVRGFTQDDAHVFCTKEQMFNECLKIHNLIISIYKDFGFEKIMVKLST 429 (652) Q Consensus 350 ~~~~SYrdLPlrl~e~~~~~R~E~sg~l~GL~R~ReF~~~Dah~F~~~eq~~~e~~~~~~~~~~v~~~~g~~~~~~~ls~ 429 (652) T Consensus 311 ~~~rSYRdLPlR~aEfg~~hR~E~SG~L~GL~RvR~FtqDDaHIFc~~dQi~~Ei~~~l~~~~~vy~~fGf~-~~~~lst 389 (604) T PRK12304 311 SDLRSYRDLPLKFFEYGVVHRHEKSGVLHGLFRVREFTQDDAHIFCMPSQIKEEVLEILDFVDKIMKAFDFS-YEMEIST 389 (604) T ss_pred CCCCCHHHCCHHHHHCCCEECCCCCCCCCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHCCCE-EEEEECC T ss_conf 277444435555454353202677766346455778977884465489999999999999999999745961-9999768 Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCHHHHCCCCCCCE Q ss_conf 53112586035778999999999850212125667520555555455432110021103310012110111022346741 Q gi|254781004|r 430 RPEKRVGSDALWDDAENIMKGVLDTIKNSSQDRINTGVLLGEGAFYGPKFEYILKDAIGRDWQCGTIQVDFNLPSRFNAF 509 (652) Q Consensus 430 ~~~~~~g~~~~~~~ae~~l~~~l~~~~~~~~~~~~~~~~~g~~afygpkid~~~~d~~gr~~~~~tiq~df~~p~~f~l~ 509 (652) T Consensus 390 rpek~~G~de~W~~Ae~~L~~aL~~~g------~~y~~~~GegAFYGPKID~~v~DalgR~wq~~TIQlDf~lPeRF~l~ 463 (604) T PRK12304 390 KPAKAIGDDEVWEKATKALKEALDENG------LKYGIDEGGGAFYGPKIDIKITDALKRKWQCGTIQVDFNLPERFKLE 463 (604) T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHCC------CCCCCCCCCCCCEECCEEEEEECCCCCHHHHHHHHHHHHCHHHCCCE T ss_conf 863347988999999999999999649------98665748552032110179862248898877888876364315738 Q ss_pred EEEECCCEEEEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHCCCEEEEECCCC Q ss_conf 67317972137996403410378999999997387088733780899985796689999999999998798899975896 Q gi|254781004|r 510 YVNSHSEKCHPVMIHRAVFGSIERFIGIMIENFKGNLPLWLSPIQAIVTTITSSAVEYAQEIANLLKSHHLSIETDFRNE 589 (652) Q Consensus 510 y~~~dg~~~~pvmihr~~~Gs~eR~ia~liE~~~g~~P~wLAP~QV~Iipi~e~~~eya~~i~~~L~~~girV~~Ddr~~ 589 (652) T Consensus 464 Y~~~dg~~~rPVmIHRAilGS~ERfiaiLiEh~~G~~P~WLaP~Qv~IipV~~~~~~YA~~v~~~L~~~girv~~D~~~e 543 (604) T PRK12304 464 YTDENNEKKQPVMIHRAILGSFERFIGILTEHFAGEFPFFIAPTQVAIVPINEAHHVYAKELQKELLKLDIDSEVYDKNE 543 (604) T ss_pred EECCCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCEEEEECCCC T ss_conf 98889983677899720357789999999998089998575761689996077789999999999998898799738999 Q ss_pred CCCHHHHHHHHCCCCEEEEECHHHHHCCCEEEEECCCCCEEEECHHHHHHHHHHHCCCH Q ss_conf 63676665543489889998742532581899988988663342999999998731435 Q gi|254781004|r 590 TINYKIREHSIKKIPIIIICGDKEASERSIGIRRFGSTTTQKVSLLDAIPILTKESLPP 648 (652) Q Consensus 590 ~~G~Kir~a~l~giP~~ivIG~ke~e~~~Vtir~R~~~~~~~i~lee~i~~l~~e~~~~ 648 (652) T Consensus 544 ~l~~KIR~a~~~kiPy~lVvGdkE~~~~~vsvR~r~~~~~~~~~~~efi~~l~~eI~~~ 602 (604) T PRK12304 544 SLNKKIRTAEKQRVPMILVLGDEEVENRSVAIRDRRAREQYNLSLDEFLNLVKEKMSEV 602 (604) T ss_pred CHHHHHHHHHHCCCCEEEEEEHHHHHCCEEEEEECCCCCCCEEEHHHHHHHHHHHHHHC T ss_conf 77699999764389989998446765596889977887457062999999999997442 |
|
| >COG0441 ThrS Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=0 Score=1289.10 Aligned_cols=583 Identities=51% Similarity=0.935 Sum_probs=560.6 Q ss_pred CEEEEEECCEEEECCEEECCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCCCH Q ss_conf 28999989889977453036707986289999999999989999999999977998899724358855788408888889 Q gi|254781004|r 37 KAVAVAINGKVCDLSDPVREGSIEIITPEDPRSLAVIRHSCAHIMAEAVQSIWPEVQVAIGPIIEDGFYYDFDKEQPFSS 116 (652) Q Consensus 37 ~~vaa~vng~l~dL~~~l~d~~i~~i~~~~~eg~~i~~hS~ahlL~~Av~~l~p~~kl~igp~i~~GfYyD~~~~~~it~ 116 (652) T Consensus 1 ~~~~~~~~~-~~~~~~-------~~~~~~~~~~~~~~rhs~ah~l~~av~~l~p~--~~~gp~ie~gfyyd~~~~~~~~~ 70 (589) T COG0441 1 KALAIHVDG-ELDLKD-------EIITAEDEEGLEIIRHSCAHVLAQAVKRLYPD--VTIGPVIEEGFYYDFDVKEPITP 70 (589) T ss_pred CEEEEECCC-CEECCC-------CCCCCCCCCCHHHEEHHHHHHHHHHHHHHCCC--CCCCCCCCCEEEEEECCCCCCCH T ss_conf 905897266-142220-------42576674213430066889999999975888--65467613405884025888898 Q ss_pred HHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCCCHHHHHHHHHCCCCCCCEEECCCCCEEECCCCCCCHHHHHHH Q ss_conf 89999999999999669980485327678544544167113556654203455421302575201000235521444222 Q gi|254781004|r 117 DELAQIEKKMQEIIARDSPFLKQYLSHEKARELFESKKEAYKVEILESIPAKENVTLYRQGEWFDLCRGPHVRSTGQVKK 196 (652) Q Consensus 117 ~dl~~Ie~~M~~ii~~~~pi~r~~vs~~eA~~~F~~~~~~~K~~li~~~~~~~~v~~y~~g~~~Dlc~GphvpsTg~ik~ 196 (652) T Consensus 71 ~dl~~ie~~m~~i~~~~~~~~~~~~~~e~a~~~f~----~yK~~~i~~~~--~~~s~y~~~~~~dlc~gph~~~t~~i-~ 143 (589) T COG0441 71 EDLLKIEKEMKEIAKENLPIEREVVSREEARAPFG----PYKAELIDCKG--HPLSEYSQGEFVDLCRGPHVPSTGKI-A 143 (589) T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHH----HHHHHHHHCCC--CCCCEEECCCCCCCCCCCCCCCCCEE-E T ss_conf 89999999999999835772899804999987766----65799986279--87506735760003678888765337-8 Q ss_pred HHHHHHHHHHCCCCCCCCCEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECC-CCCCEEEEECCHHHH Q ss_conf 3333332111015775642068999998379889999999999753200887541144044226-787435650107899 Q gi|254781004|r 197 FFKLMKVAGAYWRGDSNRPMLSRIYGTAWNTQQELTQYLYFLEESEKRDHRKLAREMDLFHIAE-DGSGVIFWHRKGWKI 275 (652) Q Consensus 197 ~fkL~~~sgayw~gd~~~~~l~Riyg~af~~~~~l~~~~~~~eea~~rdHr~lg~~~~lf~~~~-~~~G~~~wlP~G~~i 275 (652) T Consensus 144 -fkl~~~~~ayw~gd~~~~~l~riygta~~~~~~l~~~l~~~eea~krdHrklg~el~LF~~~~~~~~G~~~~~pkG~~i 222 (589) T COG0441 144 -FKLLKLAGAYWRGDENNEMLQRIYGTAFADKKELEAYLKRLEEAKKRDHRKLGKELDLFSFSPEEGPGLPFWHPKGATI 222 (589) T ss_pred -EEEEEECCHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCEEECCCCCCCCEEECCCCCCH T ss_conf -8988812453336877721067733355788999999766665027864768776214341444588506987884669 Q ss_pred HHHHHHHHHHHH-HCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCEEEECCCCHHHHHHHHHHCCCC Q ss_conf 999999999887-6896385554324431000112100125554201001456777823774343125777765201222 Q gi|254781004|r 276 FQTLISYMRRKI-KDDYEEINTPQVLDQHLWQQSGHWDSYRANMFAVKCADDTIKDLRTFALKPMNCPGHVAVFNHGLKS 354 (652) Q Consensus 276 ~~~ie~~ir~~~-~~G~~eV~tP~l~~~~Lw~~SGh~~~y~~~mf~~~~~~~~~~~~~~~~LkPmncp~h~~i~~~~~~S 354 (652) T Consensus 223 r~~le~y~~~~~~~~Gy~~V~TP~~~~~~l~~~SGH~~~y~e~mf~~~~~------~~~~~lKpmNCpgh~~ifk~~~~S 296 (589) T COG0441 223 RNLLEDYVRTKLRSYGYQEVKTPVLADLELWELSGHWDNYKEDMFLTESD------DREYALKPMNCPGHILIFKSGLRS 296 (589) T ss_pred HHHHHHHHHHHHHHCCCEEECCCEEEECCCCHHCCCHHHCCCCCEEECCC------CHHHEEEECCCHHHHHHHHCCCCC T ss_conf 99999999989875585271287363000010112045513660662137------723306410787689998537861 Q ss_pred HHHCCHHHHHHEEEECCCCCCCCEEEEECCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCC Q ss_conf 23104320001000127876452000105635334421010537678878999999887665521332100014653112 Q gi|254781004|r 355 YRELPVRLAEFGSVYRNEPSGSLHGLMRVRGFTQDDAHVFCTKEQMFNECLKIHNLIISIYKDFGFEKIMVKLSTRPEKR 434 (652) Q Consensus 355 YrdLPlrl~e~~~~~R~E~sg~l~GL~R~ReF~~~Dah~F~~~eq~~~e~~~~~~~~~~v~~~~g~~~~~~~ls~~~~~~ 434 (652) T Consensus 297 YR~LP~r~~E~g~v~R~E~SGal~GL~RvR~ftqdD~Hifc~~dQi~~E~~~~~~~i~~v~~~fg~~~y~~~ls~r~-k~ 375 (589) T COG0441 297 YRELPLRLAEFGYVYRYEKSGALHGLMRVRGFTQDDAHIFCTPDQIKDEFKGILELILEVYKDFGFTDYEVKLSTRP-KF 375 (589) T ss_pred EECCCHHHHHCCEEECCCCCCHHHCCCCCCCEEECCCCEECCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCC-CC T ss_conf 10044043314422115676422224001132245620140467889999999999999998469753799996477-64 Q ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCHHHHCCCCCCCEEEEEC Q ss_conf 58603577899999999985021212566752055555545543211002110331001211011102234674167317 Q gi|254781004|r 435 VGSDALWDDAENIMKGVLDTIKNSSQDRINTGVLLGEGAFYGPKFEYILKDAIGRDWQCGTIQVDFNLPSRFNAFYVNSH 514 (652) Q Consensus 435 ~g~~~~~~~ae~~l~~~l~~~~~~~~~~~~~~~~~g~~afygpkid~~~~d~~gr~~~~~tiq~df~~p~~f~l~y~~~d 514 (652) T Consensus 376 ig~d~~W~~a~~~l~~al~~~~------~~~~~~~G~gaFyGPKid~~v~Dalgr~~q~~TIQlDf~lpeRF~l~Yv~~d 449 (589) T COG0441 376 IGSDEMWDKAEAALREALKEIG------VEYVEEPGEGAFYGPKIDFQVKDALGREWQLGTIQLDFNLPERFDLEYVDED 449 (589) T ss_pred CCCHHHHHHHHHHHHHHHHHHC------CEEEECCCCEEEECCCCCEEEEECCCCCEECCEEEEECCCHHHCEEEEECCC T ss_conf 6873556778899998887608------6036468735797766424887356861005617870377242147998577 Q ss_pred CCEEEEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHH Q ss_conf 97213799640341037899999999738708873378089998579668999999999999879889997589663676 Q gi|254781004|r 515 SEKCHPVMIHRAVFGSIERFIGIMIENFKGNLPLWLSPIQAIVTTITSSAVEYAQEIANLLKSHHLSIETDFRNETINYK 594 (652) Q Consensus 515 g~~~~pvmihr~~~Gs~eR~ia~liE~~~g~~P~wLAP~QV~Iipi~e~~~eya~~i~~~L~~~girV~~Ddr~~~~G~K 594 (652) T Consensus 450 ~~~~~PvmiHrai~GSiERfi~iLiE~~~G~~P~WLaPvQv~VipV~~~~~~ya~~v~~~L~~~giRvdvD~~~e~l~kK 529 (589) T COG0441 450 GEKKRPVIIHRAILGSIERFIGILLEHYAGALPTWLAPVQVRVIPVADEHLDYAKEVAEKLRKAGIRVDIDDRNEKLGKK 529 (589) T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHH T ss_conf 87538789992464148999999998646988765785179999937377789999999999729702412566606899 Q ss_pred HHHHHHCCCCEEEEECHHHHHCCCEEEEECCCCCEEEECHHHHHHHHHHHCCCHHH Q ss_conf 66554348988999874253258189998898866334299999999873143562 Q gi|254781004|r 595 IREHSIKKIPIIIICGDKEASERSIGIRRFGSTTTQKVSLLDAIPILTKESLPPDC 650 (652) Q Consensus 595 ir~a~l~giP~~ivIG~ke~e~~~Vtir~R~~~~~~~i~lee~i~~l~~e~~~~d~ 650 (652) T Consensus 530 IR~a~~~kipyiiVvG~kE~e~~~v~vR~r~~~~~~~~~l~e~i~~ik~e~~~~~~ 585 (589) T COG0441 530 IREAGTQKIPYVIVVGDKEVETGTVVVRRRGGKQQKSMTLEELVEELKKEIEGRPN 585 (589) T ss_pred HHHHHHCCCCEEEEECHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCC T ss_conf 99877628787999731432038717997267755634699999999987644557 |
|
| >PRK03991 threonyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=0 Score=846.79 Aligned_cols=539 Identities=22% Similarity=0.374 Sum_probs=416.5 Q ss_pred ECCCEEEEECCCCHHH---HHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHH Q ss_conf 0367079862899999---9999998999999999997799889972435885578840888888989999999999999 Q gi|254781004|r 54 VREGSIEIITPEDPRS---LAVIRHSCAHIMAEAVQSIWPEVQVAIGPIIEDGFYYDFDKEQPFSSDELAQIEKKMQEII 130 (652) Q Consensus 54 l~d~~i~~i~~~~~eg---~~i~~hS~ahlL~~Av~~l~p~~kl~igp~i~~GfYyD~~~~~~it~~dl~~Ie~~M~~ii 130 (652) T Consensus 34 ~e~~lv~F~aVE~~De~~p~~v~~~av~ei~~~~-~~v-k~~~ivlYP------yAHLSs~L-a~P~~A~~vL~~le~~L 104 (613) T PRK03991 34 LEEALVVFTAVEKGDESNPEEVVEKAVEEIIKVA-EKV-KAENIVLYP------YAHLSSDL-ASPKVAVEVLKKLEEEL 104 (613) T ss_pred CCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHH-HHC-CCCEEEEEC------CCCCCCCC-CCHHHHHHHHHHHHHHH T ss_conf 3321899998716887898999999999999999-855-987799945------10025876-89689999999999998 Q ss_pred -HCCCCEEEEECCHHHHHHHHHHCCCHHHHHHHHHCCCCCCCEEECCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCC Q ss_conf -6699804853276785445441671135566542034554213025752010002355214442223333332111015 Q gi|254781004|r 131 -ARDSPFLKQYLSHEKARELFESKKEAYKVEILESIPAKENVTLYRQGEWFDLCRGPHVRSTGQVKKFFKLMKVAGAYWR 209 (652) Q Consensus 131 -~~~~pi~r~~vs~~eA~~~F~~~~~~~K~~li~~~~~~~~v~~y~~g~~~Dlc~GphvpsTg~ik~~fkL~~~sgayw~ 209 (652) T Consensus 105 ~~~~~eV~rAPFGwyK~F~i~-ckGHPL-sElSR~i~~~~~~~~---------------~~~~~~~----------~~~~ 157 (613) T PRK03991 105 KSEGYEVYRAPFGWYKAFKIS-CKGHPL-SELSRTITPEEEEVV---------------KEEEEIR----------SYWY 157 (613) T ss_pred HHCCCEEEECCCCCCEEEEEE-ECCCCC-HHHCCCCCCCCCHHH---------------HHHHHCC----------CEEE T ss_conf 647954997176420225777-357440-896420366610222---------------3133134----------4079 Q ss_pred CCCCCCEEEEEEEEEECCHHHHHHHHH-----HHHHHHHHHHHHHHHHCCEEEECCCC-CCEEEEECCHHHHHHHHHHHH Q ss_conf 775642068999998379889999999-----99975320088754114404422678-743565010789999999999 Q gi|254781004|r 210 GDSNRPMLSRIYGTAWNTQQELTQYLY-----FLEESEKRDHRKLAREMDLFHIAEDG-SGVIFWHRKGWKIFQTLISYM 283 (652) Q Consensus 210 gd~~~~~l~Riyg~af~~~~~l~~~~~-----~~eea~~rdHr~lg~~~~lf~~~~~~-~G~~~wlP~G~~i~~~ie~~i 283 (652) T Consensus 158 il~pdg~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~epphv~~mr~~~~~dyEp~Sd~G~~rw~PkG~~i~~lle~Yv 237 (613) T PRK03991 158 ILTPDGELHDVEDFDFTGYEDLKALVDKEVFKKELVGGEPPHVELMRKKELADYEPGSDVGHMRYYPKGRLMKDLLEDYV 237 (613) T ss_pred EECCCCCCCCHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHH T ss_conf 98899875464462311357799999987413445778983889998717655574787775123554789999999999 Q ss_pred HHHH-HCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCEEEECCCCHHHHHHHHHHCCCCHHHCCHHH Q ss_conf 9887-689638555432443100011210012555420100145677782377434312577776520122223104320 Q gi|254781004|r 284 RRKI-KDDYEEINTPQVLDQHLWQQSGHWDSYRANMFAVKCADDTIKDLRTFALKPMNCPGHVAVFNHGLKSYRELPVRL 362 (652) Q Consensus 284 r~~~-~~G~~eV~tP~l~~~~Lw~~SGh~~~y~~~mf~~~~~~~~~~~~~~~~LkPmncp~h~~i~~~~~~SYrdLPlrl 362 (652) T Consensus 238 ~~~~~~~G~~eV~TP~m~d~~~~~~sgH~~~f~e~my~~~~------d~~~~~LrpmnCpgh~~i~~~~~~SYRdLPlRl 311 (613) T PRK03991 238 YNLVKELGAMPVETPNMYDLSHPAIREHADKFGERQYRVKS------DKKDLMLRFAACFGQFAMLKDMTISYKNLPLKM 311 (613) T ss_pred HHHHHHCCCEEEECCCEEECCCCHHHHHHHHHCCCCEEEEC------CCHHHCCCCCCCCCCEEEECCCCCCHHHCCHHH T ss_conf 99998639668457616405540255688761113425632------763323044578631235102445743264677 Q ss_pred HHHEEE-ECCCCCCCCEEEEECCCCCCCCCEEECCH-HHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCHHH Q ss_conf 001000-12787645200010563533442101053-7678878999999887665521332100014653112586035 Q gi|254781004|r 363 AEFGSV-YRNEPSGSLHGLMRVRGFTQDDAHVFCTK-EQMFNECLKIHNLIISIYKDFGFEKIMVKLSTRPEKRVGSDAL 440 (652) Q Consensus 363 ~e~~~~-~R~E~sg~l~GL~R~ReF~~~Dah~F~~~-eq~~~e~~~~~~~~~~v~~~~g~~~~~~~ls~~~~~~~g~~~~ 440 (652) T Consensus 312 ~E~g~~syR~E~SG~L~GL~RVR~FTqdDaHIFC~~~dQi~~E~~~~~~li~~v~~~fG~~y-~~~~r~-------t~e~ 383 (613) T PRK03991 312 YELSDYSFRLEQRGELVGLKRLRAFTMPDMHTLCKDMDEAMEEFEKQHKLILETGRDLGRDY-EVAFRF-------TEDF 383 (613) T ss_pred HHHCCCEEECCCCCCEECEEEEECCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCE-EEEECC-------CHHH T ss_conf 65224202125677444401332356686113168778999999999999999998639763-799707-------8888 Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCHHHHCCCCCCCEEEEECCCEEEE Q ss_conf 77899999999985021212566752055555545543211002110331001211011102234674167317972137 Q gi|254781004|r 441 WDDAENIMKGVLDTIKNSSQDRINTGVLLGEGAFYGPKFEYILKDAIGRDWQCGTIQVDFNLPSRFNAFYVNSHSEKCHP 520 (652) Q Consensus 441 ~~~ae~~l~~~l~~~~~~~~~~~~~~~~~g~~afygpkid~~~~d~~gr~~~~~tiq~df~~p~~f~l~y~~~dg~~~~p 520 (652) T Consensus 384 w~~ae~~l~~~~~~~g~~~----~~e~~~g~~~fyGPKIDf~v~DalGR~wq~~TiQlDf~lp~RF~l~Yv~edg~~~~P 459 (613) T PRK03991 384 YEENKDWIVELAKREGKPV----LVEILPERKHYWVLKVEFAIIDSLGRPIENPTVQIDVENAERFGIKYVDENGKEKYP 459 (613) T ss_pred HHHHHHHHHHHHHHCCCCC----EEEECCCCCCEECCCEEEEEEECCCCCEEEEEEEEECCCHHHCCCEEECCCCCCCCC T ss_conf 8899999999999729971----476658763143141689998468972450158983278322687899899989588 Q ss_pred EEEEECCCHHHHHHHHHHHHHHCC--------CCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCC Q ss_conf 996403410378999999997387--------088733780899985796689999999999998798899975896636 Q gi|254781004|r 521 VMIHRAVFGSIERFIGIMIENFKG--------NLPLWLSPIQAIVTTITSSAVEYAQEIANLLKSHHLSIETDFRNETIN 592 (652) Q Consensus 521 vmihr~~~Gs~eR~ia~liE~~~g--------~~P~wLAP~QV~Iipi~e~~~eya~~i~~~L~~~girV~~Ddr~~~~G 592 (652) T Consensus 460 vmiHrAi~GS~ERfi~~LiE~~ag~~~~Gk~p~~P~WLaP~Qv~iiPVs~~~~~ya~~v~~~L~~~giRv~vD~r~e~lg 539 (613) T PRK03991 460 VILHCSPTGSIERVIYALLEKAAKEEKEGKVPMLPTWLSPVQVRVIPVSEEHLDYAEEVADKLEAAGIRVDVDDRDESLG 539 (613) T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHCCCEEEEECCCCCHH T ss_conf 58972665639999999999850101247878888787860379997073689999999999997798899877888561 Q ss_pred HHHHHHHHCCCCEEEEECHHHHHCCCEEEEECCCCCEEEECHHHHHHHHHHHCC Q ss_conf 766655434898899987425325818999889886633429999999987314 Q gi|254781004|r 593 YKIREHSIKKIPIIIICGDKEASERSIGIRRFGSTTTQKVSLLDAIPILTKESL 646 (652) Q Consensus 593 ~Kir~a~l~giP~~ivIG~ke~e~~~Vtir~R~~~~~~~i~lee~i~~l~~e~~ 646 (652) T Consensus 540 kKIR~A~~~kiPyi~VvGdkE~e~gtvsVR~R~~~~~~~msleeli~~i~~ev~ 593 (613) T PRK03991 540 KKIRDAGKEWVPYVVVIGDKEMESGKLTVTVREESEKEEMTLEELIERIKEETK 593 (613) T ss_pred HHHHHHHHCCCCEEEEEEHHHHHCCEEEEEECCCCCCCCCCHHHHHHHHHHHHC T ss_conf 899987543588899993135424937999877886161229999999999971 |
|
| >PRK12305 thrS threonyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=0 Score=1484.98 Aligned_cols=557 Identities=39% Similarity=0.721 Sum_probs=534.5 Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHH Q ss_conf 99999989999999999977998899724358855788408888889899999999999996699804853276785445 Q gi|254781004|r 70 LAVIRHSCAHIMAEAVQSIWPEVQVAIGPIIEDGFYYDFDKEQPFSSDELAQIEKKMQEIIARDSPFLKQYLSHEKAREL 149 (652) Q Consensus 70 ~~i~~hS~ahlL~~Av~~l~p~~kl~igp~i~~GfYyD~~~~~~it~~dl~~Ie~~M~~ii~~~~pi~r~~vs~~eA~~~ 149 (652) T Consensus 4 ~~~lRHS~AHila~Av~~l~p~~kl~iGP~ie~GFYYDf~~~~~~t~~Dl~~IE~~m~~iik~~~~~~r~~~~~----~~ 79 (576) T PRK12305 4 DKKLNHSTSHLLAAAILKLYPNVKLGIGPAIDEGFYYDFDFEDPLSESDLLKIEKLMKKLASQNLKMVKVDGAN----YD 79 (576) T ss_pred CCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEHHHH----HH T ss_conf 52003359999999999977997699789868866686246999998999999999999985899879833507----86 Q ss_pred HHHCCCHHHHHHHHHCCC-CCCCEEECCCC------CEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEE Q ss_conf 441671135566542034-55421302575------20100023552144422233333321110157756420689999 Q gi|254781004|r 150 FESKKEAYKVEILESIPA-KENVTLYRQGE------WFDLCRGPHVRSTGQVKKFFKLMKVAGAYWRGDSNRPMLSRIYG 222 (652) Q Consensus 150 F~~~~~~~K~~li~~~~~-~~~v~~y~~g~------~~Dlc~GphvpsTg~ik~~fkL~~~sgayw~gd~~~~~l~Riyg 222 (652) T Consensus 80 f~--~~~yK~eli~~~~~~~~~i~~y~~~~~~~~~~f~DLCrGpHv~~t~~ika-fkL~~vsgaYWrGd~~n~~LqRIYG 156 (576) T PRK12305 80 FK--NQPYKKELYEELKKKGEEITFYSIVDPKNKELFFDLCAGNHVESTKEIKN-FKLLSIAGAYWRGDSKNKQLTRIYG 156 (576) T ss_pred HC--CCCHHHHHHHHCCCCCCEEEEEECCCCCCCCCEEECCCCCCCCCCCCCCE-EEEEECCCCEECCCCCCCEEEEEEE T ss_conf 75--89079999852734696488996367666772658789988897232424-6886436630357875810089999 Q ss_pred EEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCC-CCCEEEEECCHHHHHHHHHHHHHHHH-HCCCEEEECCCCC Q ss_conf 983798899999999997532008875411440442267-87435650107899999999999887-6896385554324 Q gi|254781004|r 223 TAWNTQQELTQYLYFLEESEKRDHRKLAREMDLFHIAED-GSGVIFWHRKGWKIFQTLISYMRRKI-KDDYEEINTPQVL 300 (652) Q Consensus 223 ~af~~~~~l~~~~~~~eea~~rdHr~lg~~~~lf~~~~~-~~G~~~wlP~G~~i~~~ie~~ir~~~-~~G~~eV~tP~l~ 300 (652) T Consensus 157 ~af~~k~~L~~yl~~~eEakkRDHRklGkel~LF~f~~~~gpG~~~wlP~G~~i~~~le~~~r~~~~~~Gy~eV~TP~i~ 236 (576) T PRK12305 157 TSWESKEELDKYLAILQERKERDHRKIGKDLKLFTFSSLAGQGFPIWLENGMIIKNAIRKFILELDRKYGFDEVLTPHFG 236 (576) T ss_pred EEECCHHHHHHHHHHHHHHHHCCHHHHHHHCCEEEECCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHCCCEEEECCCCC T ss_conf 97179889999999999998657787642156587234468876467476789999999999999998699898464214 Q ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCEEEECCCCHHHHHHHHHHCCCCHHHCCHHHHHHEEEECCCCCCCCEEE Q ss_conf 43100011210012555420100145677782377434312577776520122223104320001000127876452000 Q gi|254781004|r 301 DQHLWQQSGHWDSYRANMFAVKCADDTIKDLRTFALKPMNCPGHVAVFNHGLKSYRELPVRLAEFGSVYRNEPSGSLHGL 380 (652) Q Consensus 301 ~~~Lw~~SGh~~~y~~~mf~~~~~~~~~~~~~~~~LkPmncp~h~~i~~~~~~SYrdLPlrl~e~~~~~R~E~sg~l~GL 380 (652) T Consensus 237 ~~~Lw~~SGH~~~Y~e~Mf~~~~-----~~~e~~~lKPMNCP~H~~if~~~~rSYRdLPlR~aEfg~~~R~E~SG~L~GL 311 (576) T PRK12305 237 EKKLYKTSGHLDHYKDDMFKPLK-----IENEELIPRPMTCPHHIILYSNELRSYRDLPIRLSEQSRLYRYEKSGALTGL 311 (576) T ss_pred CHHHHHHCCCHHHHHHHCCCCEE-----CCCCEEEECCCCCHHHHHHHHCCCCCHHHCCHHHHCCCCEECCCCCCCCCCC T ss_conf 28899766646556642573063-----1564165357786326777642775444324220004435447888655575 Q ss_pred EECCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCC----CCCCCCCHHHHHHHHHHHHHHHHHHC Q ss_conf 10563533442101053767887899999988766552133210001465----31125860357789999999998502 Q gi|254781004|r 381 MRVRGFTQDDAHVFCTKEQMFNECLKIHNLIISIYKDFGFEKIMVKLSTR----PEKRVGSDALWDDAENIMKGVLDTIK 456 (652) Q Consensus 381 ~R~ReF~~~Dah~F~~~eq~~~e~~~~~~~~~~v~~~~g~~~~~~~ls~~----~~~~~g~~~~~~~ae~~l~~~l~~~~ 456 (652) T Consensus 312 ~RvR~FtqDDAHIFct~dQi~~Ei~~~l~~i~~vy~~fGf~~~~~~lS~r~~~~~ek~~g~de~W~~Ae~~L~~al~~~g 391 (576) T PRK12305 312 ERVRAMDLTEGHIFVRKDQIESEVKHLFKMIQEALSIFKIKIFYISLSLRDPNDKEKFFDDDQMWEQAEADLKKMLKDNK 391 (576) T ss_pred CCCCCCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCC T ss_conf 54668876871212089999999999999999999853987315899943898875345972769999999999999749 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCHHHHCCCCCCCEEEEECCCEEEEEEEEECCCHHHHHHHH Q ss_conf 12125667520555555455432110021103310012110111022346741673179721379964034103789999 Q gi|254781004|r 457 NSSQDRINTGVLLGEGAFYGPKFEYILKDAIGRDWQCGTIQVDFNLPSRFNAFYVNSHSEKCHPVMIHRAVFGSIERFIG 536 (652) Q Consensus 457 ~~~~~~~~~~~~~g~~afygpkid~~~~d~~gr~~~~~tiq~df~~p~~f~l~y~~~dg~~~~pvmihr~~~Gs~eR~ia 536 (652) T Consensus 392 ------~~y~~~~GegAFYGPKID~~v~DalgR~wq~~TIQlDf~lPeRF~l~Y~~~dg~~~rPVmIHRAilGS~ERfig 465 (576) T PRK12305 392 ------INYKEMIGEAAFYGPKIDFQVKTVLNKEITVSTIQLDFLLPEKFNISYINENNEKETPVLIHRGLIGTYERFIA 465 (576) T ss_pred ------CCCEECCCCCCEECCCCCEEEECCCCCEEEEEEEEEEECCHHHCCCEEECCCCCCCCCEEEEECCCCCHHHHHH T ss_conf ------97142306501056763469850678678742456663458557988877888767875987335474899999 Q ss_pred HHHHHHCCCCCCCCCCEEEEEEECCHH-HHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHCCCCEEEEECHHHHH Q ss_conf 999973870887337808999857966-8999999999999879889997589663676665543489889998742532 Q gi|254781004|r 537 IMIENFKGNLPLWLSPIQAIVTTITSS-AVEYAQEIANLLKSHHLSIETDFRNETINYKIREHSIKKIPIIIICGDKEAS 615 (652) Q Consensus 537 ~liE~~~g~~P~wLAP~QV~Iipi~e~-~~eya~~i~~~L~~~girV~~Ddr~~~~G~Kir~a~l~giP~~ivIG~ke~e 615 (652) T Consensus 466 iLiEh~~G~~P~WLaP~Qv~IipV~e~~~~~ya~~v~~~L~~~giRv~vD~~~e~lg~KIR~a~~~kiPy~lVvGdkE~~ 545 (576) T PRK12305 466 ILLEQTKGNLPFWLSPKQVIIIPVNENLNTDYAKELNKKLFKLGFRSEIDLRNERLSKKIREAQISKIKFQIIIGDEEIK 545 (576) T ss_pred HHHHHCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEEEHHHHH T ss_conf 99997079998362730379995386035999999999999789879997899967699999753499989998003554 Q ss_pred CCCEEEEECCCCCEEEECHHHHHHHHHHH Q ss_conf 58189998898866334299999999873 Q gi|254781004|r 616 ERSIGIRRFGSTTTQKVSLLDAIPILTKE 644 (652) Q Consensus 616 ~~~Vtir~R~~~~~~~i~lee~i~~l~~e 644 (652) T Consensus 546 ~~~VsvR~r~~~~~~~~~l~efi~~l~~l 574 (576) T PRK12305 546 NNTITYRKYGSEETTTVSIEDFIKMLKNL 574 (576) T ss_pred CCEEEEEECCCCCCCEEEHHHHHHHHHHH T ss_conf 59689997788855546899999999973 |
|
| >TIGR00418 thrS threonyl-tRNA synthetase; InterPro: IPR002320 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=100.00 E-value=0 Score=1445.19 Aligned_cols=561 Identities=48% Similarity=0.900 Sum_probs=545.1 Q ss_pred HHHHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHC Q ss_conf 99899999999999779988997243588557884088888898999999999999966998048532767854454416 Q gi|254781004|r 74 RHSCAHIMAEAVQSIWPEVQVAIGPIIEDGFYYDFDKEQPFSSDELAQIEKKMQEIIARDSPFLKQYLSHEKARELFESK 153 (652) Q Consensus 74 ~hS~ahlL~~Av~~l~p~~kl~igp~i~~GfYyD~~~~~~it~~dl~~Ie~~M~~ii~~~~pi~r~~vs~~eA~~~F~~~ 153 (652) T Consensus 1 rh~~Ah~l~~a~k~~~~~~~~~~gp~~e~GFyyD~~~~~~~~~~dl~~ie~~m~~~~~~~~~~~~~~~s~~~A~~~f~~~ 80 (595) T TIGR00418 1 RHSIAHLLAEAVKQLYPDVKLAVGPVIEDGFYYDFEVDKSITEEDLEKIEKEMKEIIKKNYPIARLSVSLEEALEAFKEV 80 (595) T ss_pred CCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHCCHHHHHHHHHHHHHHHHHHCCEEEEEECHHHHHHHHHHH T ss_conf 95012463899970478718998255478754552000002778999999999999864057025772478999999862 Q ss_pred CCHHHHHHHHH-CCCCCCCEEECCCC-CEEECCCCCCCHHHHHH---HHHHHHHHHHHCCCCCCCCCEEEEEEE----EE Q ss_conf 71135566542-03455421302575-20100023552144422---233333321110157756420689999----98 Q gi|254781004|r 154 KEAYKVEILES-IPAKENVTLYRQGE-WFDLCRGPHVRSTGQVK---KFFKLMKVAGAYWRGDSNRPMLSRIYG----TA 224 (652) Q Consensus 154 ~~~~K~~li~~-~~~~~~v~~y~~g~-~~Dlc~GphvpsTg~ik---~~fkL~~~sgayw~gd~~~~~l~Riyg----~a 224 (652) T Consensus 81 ~~~~k~~l~~~~~~~~~~~~~y~~~~~f~dlC~GpHlp~~~~~~~~~~~fkL~~~~gaYw~Gd~~n~~LqRiyGn~~~~~ 160 (595) T TIGR00418 81 GEPLKLELLDEIIPNGEAVTVYGQGEAFVDLCRGPHLPNTSRIKPAQKAFKLEKVAGAYWRGDSKNEMLQRIYGNIDITA 160 (595) T ss_pred CCHHHHHHHHHCCCCCCCEEEECCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCEEEEC T ss_conf 13122677851045666420422521345615797683235667640345665432331026889853788857254501 Q ss_pred ECCHHHHHHHHHHHHHHHHH--HHHHHHHHCCEEEECC-CCCCEEEEECCHHHHHHHHHHHHHHHH-HCCCEEEECCCCC Q ss_conf 37988999999999975320--0887541144044226-787435650107899999999999887-6896385554324 Q gi|254781004|r 225 WNTQQELTQYLYFLEESEKR--DHRKLAREMDLFHIAE-DGSGVIFWHRKGWKIFQTLISYMRRKI-KDDYEEINTPQVL 300 (652) Q Consensus 225 f~~~~~l~~~~~~~eea~~r--dHr~lg~~~~lf~~~~-~~~G~~~wlP~G~~i~~~ie~~ir~~~-~~G~~eV~tP~l~ 300 (652) T Consensus 161 ~~~k~~L~~yl~~~eEa~~r~PDHRklGKeL~Lf~f~~~~gpG~~~WlPkG~~ir~~ledf~~~~~~~~Gy~~V~TP~m~ 240 (595) T TIGR00418 161 FADKKQLAEYLKRLEEAKKREPDHRKLGKELELFSFEPEIGPGLPFWLPKGALIRNLLEDFVREKQIKRGYEEVETPIMY 240 (595) T ss_pred CCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEC T ss_conf 45878999999999997426857256754531234583204874146576467899999999999987588641574121 Q ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCEEEECCCCHHHHHHHHHHCCCCHHHCCHHHHHHE-EEECCCCCCCCEE Q ss_conf 431000112100125554201001456777823774343125777765201222231043200010-0012787645200 Q gi|254781004|r 301 DQHLWQQSGHWDSYRANMFAVKCADDTIKDLRTFALKPMNCPGHVAVFNHGLKSYRELPVRLAEFG-SVYRNEPSGSLHG 379 (652) Q Consensus 301 ~~~Lw~~SGh~~~y~~~mf~~~~~~~~~~~~~~~~LkPmncp~h~~i~~~~~~SYrdLPlrl~e~~-~~~R~E~sg~l~G 379 (652) T Consensus 241 ~~~l~~~sGH~~~Y~e~Mf~~~~~-----~~~~~~LkPMnCpgH~~i~k~~~~SYR~LP~R~aE~g~~~hR~E~sG~L~G 315 (595) T TIGR00418 241 DSELWEISGHWDHYKERMFPFTEE-----DNQEFMLKPMNCPGHILIFKSSLRSYRDLPLRIAELGTTVHRYEKSGALHG 315 (595) T ss_pred CCCCHHHHHHHHHCCCCCCCCEEE-----CCCCCCCCCCCCHHHHHHHCCCCCCHHHCCCHHHHCCCEEEEEECCCCCCH T ss_conf 565424530545034235401010-----353033456775445330017777732335034331860478842542101 Q ss_pred EEECCCCCCCCCEEECC-HHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCC-CC-C--CCCCHHHHHHHHHHHHHHHHH Q ss_conf 01056353344210105-3767887899999988766552133210001465-31-1--258603577899999999985 Q gi|254781004|r 380 LMRVRGFTQDDAHVFCT-KEQMFNECLKIHNLIISIYKDFGFEKIMVKLSTR-PE-K--RVGSDALWDDAENIMKGVLDT 454 (652) Q Consensus 380 L~R~ReF~~~Dah~F~~-~eq~~~e~~~~~~~~~~v~~~~g~~~~~~~ls~~-~~-~--~~g~~~~~~~ae~~l~~~l~~ 454 (652) T Consensus 316 L~RvR~FT~dDaHifc~d~dQi~~E~~~~~~l~~~v~~~fgf~~~~~~LS~R~Pe~~~Ky~g~d~~W~~~~~~l~~~l~~ 395 (595) T TIGR00418 316 LKRVRGFTQDDAHIFCTDEDQIKSEIKNQFRLIQKVYSKFGFSNYKYELSTRDPENDKKYIGEDELWEKAESALEEALKE 395 (595) T ss_pred HHHHHHCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHC T ss_conf 01644306998524537867799999999999999988728842168998717775455458878999999999999850 Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCHHHHCCCCCCCEEEEEC--CCEEEEEEEEECCCHHHH Q ss_conf 021212566752055555545543211002110331001211011102234674167317--972137996403410378 Q gi|254781004|r 455 IKNSSQDRINTGVLLGEGAFYGPKFEYILKDAIGRDWQCGTIQVDFNLPSRFNAFYVNSH--SEKCHPVMIHRAVFGSIE 532 (652) Q Consensus 455 ~~~~~~~~~~~~~~~g~~afygpkid~~~~d~~gr~~~~~tiq~df~~p~~f~l~y~~~d--g~~~~pvmihr~~~Gs~e 532 (652) T Consensus 396 ~~------~~yei~~G~~AFYGPKiDf~~~DaL~R~~q~~TvQlDf~lPeRF~l~Y~~~dqd~~~~~Pv~IHra~~GS~E 469 (595) T TIGR00418 396 LG------VDYEIDEGEGAFYGPKIDFQIKDALGREWQCATVQLDFELPERFDLTYINEDQDNKEKRPVMIHRAILGSIE 469 (595) T ss_pred CC------CCEEEECCCCEEECCEEEEEEEECCCCHHHCCCEEEECCCCCCCCCEEEEECCCCCCCCCEEEECCCCHHHH T ss_conf 79------840550788113022268887510176425881488715887203148420367870067789804400589 Q ss_pred HHHHHHHHHHCCCC-------CCCCCCEEEEEEECC-HHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHCCCC Q ss_conf 99999999738708-------873378089998579-6689999999999998798899975896636766655434898 Q gi|254781004|r 533 RFIGIMIENFKGNL-------PLWLSPIQAIVTTIT-SSAVEYAQEIANLLKSHHLSIETDFRNETINYKIREHSIKKIP 604 (652) Q Consensus 533 R~ia~liE~~~g~~-------P~wLAP~QV~Iipi~-e~~~eya~~i~~~L~~~girV~~Ddr~~~~G~Kir~a~l~giP 604 (652) T Consensus 470 Rfi~iL~E~~~G~fde~~PMLP~WLaP~QV~viPV~i~~h~~yA~kv~~~L~~~giRv~~D~r~e~lgkKIR~a~~~kiP 549 (595) T TIGR00418 470 RFIAILLEKYAGAFDERLPMLPLWLAPVQVVVIPVSIEKHLDYAKKVAEKLKKEGIRVDVDDRNERLGKKIREAQKQKIP 549 (595) T ss_pred HHHHHHHHHHHHHHHCCCCCCCEECCCEEEEEEECCHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHCCCCC T ss_conf 99999998752221146898854217623899705778899999999999985797798838888013320220132206 Q ss_pred EEEEECHHHHHC--CCEEEEECC---CCCEEEECHHHHHHHHHHHC Q ss_conf 899987425325--818999889---88663342999999998731 Q gi|254781004|r 605 IIIICGDKEASE--RSIGIRRFG---STTTQKVSLLDAIPILTKES 645 (652) Q Consensus 605 ~~ivIG~ke~e~--~~Vtir~R~---~~~~~~i~lee~i~~l~~e~ 645 (652) T Consensus 550 y~~V~Gd~E~e~~K~~v~vR~~~t~k~~~~~~m~~~E~~~~~~~~~ 595 (595) T TIGR00418 550 YMLVVGDKEMEELKEAVNVRTRKTLKGQKLEKMSLDEFLEKVRKEV 595 (595) T ss_pred EEEEECCHHHHCCCCEEEECCHHHHCCCCEEEECHHHHHHHHHHCC T ss_conf 7999873023138966852240210463101430999999997339 |
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases . Threonyl-tRNA synthetase (6.1.1.3 from EC) exists as a monomer and belongs to class IIa. The enzyme from Escherichia coli represses the translation of its own mRNA. The crystal structure of the complex between tRNA(Thr) and ThrRS show structural features that reveal novel strategies for providing specificity in tRNA selection. These include an amino-terminal domain containing a novel protein fold that makes minor groove contacts with the tRNA acceptor stem. The enzyme induces a large deformation of the anticodon loop, resulting in an interaction between two adjacent anticodon bases, which accounts for their prominent role in tRNA identity and translational regulation. A zinc ion found in the active site is implicated in amino acid recognition/discrimination . The zinc ion may act to ensure that only amino acids that possess a hydroxyl group attached to the beta-position are activated .; GO: 0004829 threonine-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006435 threonyl-tRNA aminoacylation, 0005737 cytoplasm. |
| >cd00771 ThrRS_core Threonyl-tRNA synthetase (ThrRS) class II core catalytic domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=0 Score=781.67 Aligned_cols=296 Identities=53% Similarity=1.008 Sum_probs=287.9 Q ss_pred HHHHHHHHCCEEEECC-CCCCEEEEECCHHHHHHHHHHHHHHHH-HCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEE Q ss_conf 0887541144044226-787435650107899999999999887-68963855543244310001121001255542010 Q gi|254781004|r 245 DHRKLAREMDLFHIAE-DGSGVIFWHRKGWKIFQTLISYMRRKI-KDDYEEINTPQVLDQHLWQQSGHWDSYRANMFAVK 322 (652) Q Consensus 245 dHr~lg~~~~lf~~~~-~~~G~~~wlP~G~~i~~~ie~~ir~~~-~~G~~eV~tP~l~~~~Lw~~SGh~~~y~~~mf~~~ 322 (652) T Consensus 1 dHrklg~el~lf~~~~~~g~G~~~w~P~G~~i~~~L~~~ir~~~~~~Gy~eV~tP~i~~~~Lw~~SGH~~~y~e~mf~~~ 80 (298) T cd00771 1 DHRRLGGELELFFFFDEAGPGLPFWLPKGAIIRNELEDFLRELQRKRGYQEVETPIIYNKELWETSGHWDHYRENMFPFE 80 (298) T ss_pred CHHHHCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHCCCCCCCCCCEEEEE T ss_conf 94574401157511777667657883888999999999999999986998998861266556754776311368568888 Q ss_pred CCCCCCCCCCEEEECCCCHHHHHHHHHHCCCCHHHCCHHHHHHEEEECCCCCCCCEEEEECCCCCCCCCEEECCHHHHHH Q ss_conf 01456777823774343125777765201222231043200010001278764520001056353344210105376788 Q gi|254781004|r 323 CADDTIKDLRTFALKPMNCPGHVAVFNHGLKSYRELPVRLAEFGSVYRNEPSGSLHGLMRVRGFTQDDAHVFCTKEQMFN 402 (652) Q Consensus 323 ~~~~~~~~~~~~~LkPmncp~h~~i~~~~~~SYrdLPlrl~e~~~~~R~E~sg~l~GL~R~ReF~~~Dah~F~~~eq~~~ 402 (652) T Consensus 81 ~------~~~~~~LkPmnCp~h~~i~~~~~~SYrdLPlR~~E~g~~~R~E~sG~L~GL~RvR~FtqdDaHiFc~~eQ~~~ 154 (298) T cd00771 81 E------EDEEYGLKPMNCPGHCLIFKSKPRSYRDLPLRLAEFGTVHRYEQSGALHGLTRVRGFTQDDAHIFCTPDQIKE 154 (298) T ss_pred E------CCCCEEEECCCCHHHHHHHHCCCCCHHHCCHHHHCCCCEECCCCCCCCCCCCCCCCCCCCCCEEECCHHHHHH T ss_conf 6------2541688506868899998635567343467652075055476776755744555674576324416889999 Q ss_pred HHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 78999999887665521332100014653112586035778999999999850212125667520555555455432110 Q gi|254781004|r 403 ECLKIHNLIISIYKDFGFEKIMVKLSTRPEKRVGSDALWDDAENIMKGVLDTIKNSSQDRINTGVLLGEGAFYGPKFEYI 482 (652) Q Consensus 403 e~~~~~~~~~~v~~~~g~~~~~~~ls~~~~~~~g~~~~~~~ae~~l~~~l~~~~~~~~~~~~~~~~~g~~afygpkid~~ 482 (652) T Consensus 155 E~~~~~~~~~~vy~~fG~~~~~~~ls~r~ek~~g~~e~W~~ae~~l~~~l~~~~------~~~~~~~ge~AFyGPKiD~~ 228 (298) T cd00771 155 EIKGVLDLIKEVYSDFGFFDYKVELSTRPEKFIGSDEVWEKAEAALREALEEIG------LPYEINEGEGAFYGPKIDFH 228 (298) T ss_pred HHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCC------CCCEECCCCCEEEEEEEEEE T ss_conf 999999999999998288732489964787677998999999999999999759------98575788600130058999 Q ss_pred HHHHCCCCCCCCCCCHHHHCCCCCCCEEEEECCCEEEEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCC Q ss_conf 0211033100121101110223467416731797213799640341037899999999738708873378 Q gi|254781004|r 483 LKDAIGRDWQCGTIQVDFNLPSRFNAFYVNSHSEKCHPVMIHRAVFGSIERFIGIMIENFKGNLPLWLSP 552 (652) Q Consensus 483 ~~d~~gr~~~~~tiq~df~~p~~f~l~y~~~dg~~~~pvmihr~~~Gs~eR~ia~liE~~~g~~P~wLAP 552 (652) T Consensus 229 ~~D~lgR~~q~~TiQlDf~lp~rF~l~Y~~~dg~~~~Pv~iHrai~GS~ERfia~LiE~~~G~~P~WLaP 298 (298) T cd00771 229 VKDALGREWQCSTIQLDFNLPERFDLTYIGEDGEKKRPVMIHRAILGSIERFIGILIEHYAGKFPLWLAP 298 (298) T ss_pred EEECCCCEEEEEEEEEEECCHHHCCCEEECCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCC T ss_conf 8606897687014688506743269889989998648989995576709999999998607998866593 |
ThrRS is a homodimer. It is responsible for the attachment of threonine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. |
| >cd00778 ProRS_core_arch_euk Prolyl-tRNA synthetase (ProRS) class II core catalytic domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=0 Score=506.78 Aligned_cols=245 Identities=23% Similarity=0.407 Sum_probs=213.8 Q ss_pred HCCEEEECCCCCCEEEEECCHHHHHHHHHHHHHHHHH-CCCEEEECCCCCCCCCC-CCCCCCCCCCCCCCEEECCCCCCC Q ss_conf 1440442267874356501078999999999998876-89638555432443100-011210012555420100145677 Q gi|254781004|r 252 EMDLFHIAEDGSGVIFWHRKGWKIFQTLISYMRRKIK-DDYEEINTPQVLDQHLW-QQSGHWDSYRANMFAVKCADDTIK 329 (652) Q Consensus 252 ~~~lf~~~~~~~G~~~wlP~G~~i~~~ie~~ir~~~~-~G~~eV~tP~l~~~~Lw-~~SGh~~~y~~~mf~~~~~~~~~~ 329 (652) T Consensus 12 ~~~l~d~~-pv~G~~~~lP~G~~i~~~l~~~~r~~~~~~G~~ev~~P~l~~~~~~~k~sgh~~~y~~emf~v~~-~g~~~ 89 (261) T cd00778 12 KAELIDYG-PVKGCMVFRPYGYAIWENIQKILDKEIKETGHENVYFPLLIPESELEKEKEHIEGFAPEVAWVTH-GGLEE 89 (261) T ss_pred HHCCCCCC-CCCCEEEECCCHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHCHHHCCCCCCEEEEC-CCCCC T ss_conf 81772247-99830888632899999999999999998699699883327889999742814305765335521-68520 Q ss_pred CCCEEEECCCCHHHHHHHHHHCCCCHHHCCHHHHHHEEEECCCCCCCCEEEEECCCCCCCCCE-EECCHHHHHHHHHHHH Q ss_conf 782377434312577776520122223104320001000127876452000105635334421-0105376788789999 Q gi|254781004|r 330 DLRTFALKPMNCPGHVAVFNHGLKSYRELPVRLAEFGSVYRNEPSGSLHGLMRVRGFTQDDAH-VFCTKEQMFNECLKIH 408 (652) Q Consensus 330 ~~~~~~LkPmncp~h~~i~~~~~~SYrdLPlrl~e~~~~~R~E~sg~l~GL~R~ReF~~~Dah-~F~~~eq~~~e~~~~~ 408 (652) T Consensus 90 ~d~~y~LkPmne~~~~~i~~~~~~SYRdLPlrl~q~g~~~R~E~s~-~~gL~RvReF~~dDahs~~~t~eq~~~e~~~~~ 168 (261) T cd00778 90 LEEPLALRPTSETAIYPMFSKWIRSYRDLPLKINQWVNVFRWETKT-TRPFLRTREFLWQEGHTAHATEEEAEEEVLQIL 168 (261) T ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHCCCEECCCCCC-CCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHH T ss_conf 1356034788869999999735054022782555304224377888-876532542523423365589999999999999 Q ss_pred HHHHHHHHHHCCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCC Q ss_conf 99887665521332100014653112586035778999999999850212125667520555555455432110021103 Q gi|254781004|r 409 NLIISIYKDFGFEKIMVKLSTRPEKRVGSDALWDDAENIMKGVLDTIKNSSQDRINTGVLLGEGAFYGPKFEYILKDAIG 488 (652) Q Consensus 409 ~~~~~v~~~~g~~~~~~~ls~~~~~~~g~~~~~~~ae~~l~~~l~~~~~~~~~~~~~~~~~g~~afygpkid~~~~d~~g 488 (652) T Consensus 169 ~~y~~i~~~l~~~--~~~~~~~~~--------~d--------------------------k~~Ga~y~~~id~~~~d--g 210 (261) T cd00778 169 DLYKEFYEDLLAI--PVVKGRKTE--------WE--------------------------KFAGADYTYTIEAMMPD--G 210 (261) T ss_pred HHHHHHHHHHCCE--EEEEECCCH--------HC--------------------------CCCCCCCCEEEEEECCC--C T ss_conf 9999999984781--578605652--------11--------------------------16785100014787478--8 Q ss_pred CCCCCCCC-CHHHHCCCCCCCEEEEECCCEEEEEEEEECCCHHHHHHHHHHHH Q ss_conf 31001211-01110223467416731797213799640341037899999999 Q gi|254781004|r 489 RDWQCGTI-QVDFNLPSRFNAFYVNSHSEKCHPVMIHRAVFGSIERFIGIMIE 540 (652) Q Consensus 489 r~~~~~ti-q~df~~p~~f~l~y~~~dg~~~~pvmihr~~~Gs~eR~ia~liE 540 (652) T Consensus 211 r~~q~gti~~l~~~~s~~f~l~y~~~dg~~~~p---hr~~~G~~eR~ig~lI~ 260 (261) T cd00778 211 RALQSGTSHNLGQNFSKAFDIKYQDKDGQKEYV---HQTSWGISTRLIGAIIM 260 (261) T ss_pred CEEEEEHHHHCCCCHHHHCCCEEECCCCCCCCC---EEEEEEHHHHHHHHHHC T ss_conf 704675102027653563798999999998085---57412499899889734 |
ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from archaea, the cytoplasm of eukaryotes and some bacteria. |
| >cd00779 ProRS_core_prok Prolyl-tRNA synthetase (ProRS) class II core catalytic domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=0 Score=432.20 Aligned_cols=250 Identities=23% Similarity=0.392 Sum_probs=209.1 Q ss_pred HHHHHHHHHHHHCCEEEECCCCCCEEEEECCHHHHHHHHHHHHHHHHH-CCCEEEECCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 532008875411440442267874356501078999999999998876-8963855543244310001121001255542 Q gi|254781004|r 241 SEKRDHRKLAREMDLFHIAEDGSGVIFWHRKGWKIFQTLISYMRRKIK-DDYEEINTPQVLDQHLWQQSGHWDSYRANMF 319 (652) Q Consensus 241 a~~rdHr~lg~~~~lf~~~~~~~G~~~wlP~G~~i~~~ie~~ir~~~~-~G~~eV~tP~l~~~~Lw~~SGh~~~y~~~mf 319 (652) T Consensus 2 ~~~~s~~ll~-~a--g~i~~~~~G~~~~lP~G~~i~~~i~~~i~~~~~~~G~~ev~~P~l~~~~l~~~sg~~~~f~~emf 78 (255) T cd00779 2 AEIISHKLLL-RA--GFIRQTSSGLYSWLPLGLRVLKKIENIIREEMNKIGAQEILMPILQPAELWKESGRWDAYGPELL 78 (255) T ss_pred CCHHHHHHHH-HC--CCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHCCCCCCCCCEE T ss_conf 4256799998-75--88765788627885029999999999999999985998997653473888744253013687315 Q ss_pred EEECCCCCCCCCCEEEECCCCHHHHHHHHHHCCCCHHHCCHHHHHHEEEECCCCCCCCEEEEECCCCCCCCCEEECC-HH Q ss_conf 01001456777823774343125777765201222231043200010001278764520001056353344210105-37 Q gi|254781004|r 320 AVKCADDTIKDLRTFALKPMNCPGHVAVFNHGLKSYRELPVRLAEFGSVYRNEPSGSLHGLMRVRGFTQDDAHVFCT-KE 398 (652) Q Consensus 320 ~~~~~~~~~~~~~~~~LkPmncp~h~~i~~~~~~SYrdLPlrl~e~~~~~R~E~sg~l~GL~R~ReF~~~Dah~F~~-~e 398 (652) T Consensus 79 ~v~-----d~~~~~~~L~PT~E~~~~~~~~~~i~SyrdLPl~~~q~~~~fR~E~r~-~~GllR~rEF~~~d~hsf~~~~e 152 (255) T cd00779 79 RLK-----DRHGKEFLLGPTHEEVITDLVANEIKSYKQLPLNLYQIQTKFRDEIRP-RFGLMRGREFLMKDAYSFDIDEE 152 (255) T ss_pred EEE-----CCCCCEEEECCCCHHHHHHHHHHHCCCHHHCCEEEECCCCEECCCCCC-CCCCCEEEEEEEEHHHCCCCCHH T ss_conf 445-----378877731688748899999865036122574541353354256678-86632431377002203569989 Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 67887899999988766552133210001465311258603577899999999985021212566752055555545543 Q gi|254781004|r 399 QMFNECLKIHNLIISIYKDFGFEKIMVKLSTRPEKRVGSDALWDDAENIMKGVLDTIKNSSQDRINTGVLLGEGAFYGPK 478 (652) Q Consensus 399 q~~~e~~~~~~~~~~v~~~~g~~~~~~~ls~~~~~~~g~~~~~~~ae~~l~~~l~~~~~~~~~~~~~~~~~g~~afygpk 478 (652) T Consensus 153 ~a~~~~~~~~~~y~~i~~~Lglp~~~v~~~~g~~g~~~s~ef~~~~~--------------------------------- 199 (255) T cd00779 153 SLEETYEKMYQAYSRIFKRLGLPFVKVEADSGAIGGSLSHEFHVLSP--------------------------------- 199 (255) T ss_pred HHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEEEEEC--------------------------------- T ss_conf 99999999999999999983998799854766778874579999824--------------------------------- Q ss_pred CCCCHHHHCCCCCCCC-CCCHHHHCCCCCCCEEEEECCCEEEEEEEEECCCH-HHHHHHHHHHHH Q ss_conf 2110021103310012-11011102234674167317972137996403410-378999999997 Q gi|254781004|r 479 FEYILKDAIGRDWQCG-TIQVDFNLPSRFNAFYVNSHSEKCHPVMIHRAVFG-SIERFIGIMIEN 541 (652) Q Consensus 479 id~~~~d~~gr~~~~~-tiq~df~~p~~f~l~y~~~dg~~~~pvmihr~~~G-s~eR~ia~liE~ 541 (652) T Consensus 200 ----l--~~~~~lEvg~~~~lG~~~s~~~~i~y~d~dg~~~~~~m---~s~Gi~i~R~i~AliEq 255 (255) T cd00779 200 ----L--KITKGIEVGHIFQLGTKYSKALGATFLDENGKPKPLEM---GCYGIGVSRLLAAIIEQ 255 (255) T ss_pred ----C--CCCCEEEEEEEECCCCHHHHHCCCEEECCCCCEEEEEE---ECCCCHHHHHHHHHCCC T ss_conf ----7--77756899745505625578559999999999884697---06504898888884049 |
ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from prokaryotes and from the mitochondria of eukaryotes. |
| >cd00772 ProRS_core Prolyl-tRNA synthetase (ProRS) class II core catalytic domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=0 Score=424.30 Aligned_cols=241 Identities=19% Similarity=0.250 Sum_probs=202.1 Q ss_pred CCCCEEEEECCHHHHHHHHHHHHHHHHHC-CCEEEECCCCCCCCCCCCCCCCCCCCC-CCCEEECCCCCCCCCCEEEECC Q ss_conf 78743565010789999999999988768-963855543244310001121001255-5420100145677782377434 Q gi|254781004|r 261 DGSGVIFWHRKGWKIFQTLISYMRRKIKD-DYEEINTPQVLDQHLWQQSGHWDSYRA-NMFAVKCADDTIKDLRTFALKP 338 (652) Q Consensus 261 ~~~G~~~wlP~G~~i~~~ie~~ir~~~~~-G~~eV~tP~l~~~~Lw~~SGh~~~y~~-~mf~~~~~~~~~~~~~~~~LkP 338 (652) T Consensus 20 ~~~G~~~~lP~G~~i~~ki~~~i~~e~~~~G~qev~~P~l~p~~lw~ksgr~~~~~~~e~~~~~~-~~~~~~e~~~~L~P 98 (264) T cd00772 20 PGRGIINFLPLAKAILDKIENVLDKMFKEHGAQNALFPFFILASFLEKEAEHDEGFSKELAVFKD-AGDEELEEDFALRP 98 (264) T ss_pred CCCCEEEECHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHCCCHHHCCCCCEEEEEE-CCCCCCCCCCCCCC T ss_conf 98875888905999999999999999998299498125679989999769844437852379973-48742123520167 Q ss_pred CCHHHHHHHHHHCCCCHHHCCHHHHHHEEEECCCCCCCCEEEEECCCCCCCCCEEE-CCHHHHHHHHHHHHHHHHHHHHH Q ss_conf 31257777652012222310432000100012787645200010563533442101-05376788789999998876655 Q gi|254781004|r 339 MNCPGHVAVFNHGLKSYRELPVRLAEFGSVYRNEPSGSLHGLMRVRGFTQDDAHVF-CTKEQMFNECLKIHNLIISIYKD 417 (652) Q Consensus 339 mncp~h~~i~~~~~~SYrdLPlrl~e~~~~~R~E~sg~l~GL~R~ReF~~~Dah~F-~~~eq~~~e~~~~~~~~~~v~~~ 417 (652) T Consensus 99 T~Ee~~~~~~~~~i~SyrdLPl~lyQ~~~~fR~E~r~-r~GllR~REFlmkDahsf~~t~e~a~~~y~~~~~~Y~~if~~ 177 (264) T cd00772 99 TLEENIGEIAAKFIKSWKDLPQHLNQIGNKFRDEIRP-RFGFLRAREFIMKDGHSAHADAEEADEEFLNMLSAYAEIARD 177 (264) T ss_pred CCCHHHHHHHHHHCCCHHHCCHHHHHHHHHHHCCCCC-CCCCHHHEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHH T ss_conf 7868999999864076655797787655786057885-543323204341103532599999999999999999999999 Q ss_pred HCCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCC Q ss_conf 21332100014653112586035778999999999850212125667520555555455432110021103310012110 Q gi|254781004|r 418 FGFEKIMVKLSTRPEKRVGSDALWDDAENIMKGVLDTIKNSSQDRINTGVLLGEGAFYGPKFEYILKDAIGRDWQCGTIQ 497 (652) Q Consensus 418 ~g~~~~~~~ls~~~~~~~g~~~~~~~ae~~l~~~l~~~~~~~~~~~~~~~~~g~~afygpkid~~~~d~~gr~~~~~tiq 497 (652) T Consensus 178 lg~lp~~~~~~~~g~kf~Ga~~s~ef--------------------~~~~~~G~~---------------~~~ev~H~f~ 222 (264) T cd00772 178 LAAIDFIEGEADEGAKFAGASKSREF--------------------EALMEDGKA---------------KQAETGHIFG 222 (264) T ss_pred HCCCCCEEEECCCCCCCCCCEEEEEE--------------------EEECCCCCC---------------CEEEEEEECC T ss_conf 66985167644778856885016899--------------------998788871---------------3644688815 Q ss_pred HHHHCCCCCCCEEEEECCCEEEEEEEEECCCH-HHHHHHHHHHHH Q ss_conf 11102234674167317972137996403410-378999999997 Q gi|254781004|r 498 VDFNLPSRFNAFYVNSHSEKCHPVMIHRAVFG-SIERFIGIMIEN 541 (652) Q Consensus 498 ~df~~p~~f~l~y~~~dg~~~~pvmihr~~~G-s~eR~ia~liE~ 541 (652) T Consensus 223 ~g~~~s~~~~~~f~~~dg~~~~v~m---~syGIgitRligaiIeq 264 (264) T cd00772 223 EGFARAFDLKAKFLDKDGKEKFFEM---GCWGIGISRFIGAIIEQ 264 (264) T ss_pred CCCCEECCCCCEEECCCCCEEEEEE---CCCCCHHHHHHHEEECC T ss_conf 7850122566578889999822580---36778177444405529 |
ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. |
| >cd00770 SerRS_core Seryl-tRNA synthetase (SerRS) class II core catalytic domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=0 Score=348.57 Aligned_cols=269 Identities=19% Similarity=0.332 Sum_probs=223.3 Q ss_pred HHHHHHHHHHHHHCCEEEECC---C-CCCEEEEECCHHHHHHHHHHHHHHHH-HCCCEEEECCCCCCCCCCCCCCCCCCC Q ss_conf 753200887541144044226---7-87435650107899999999999887-689638555432443100011210012 Q gi|254781004|r 240 ESEKRDHRKLAREMDLFHIAE---D-GSGVIFWHRKGWKIFQTLISYMRRKI-KDDYEEINTPQVLDQHLWQQSGHWDSY 314 (652) Q Consensus 240 ea~~rdHr~lg~~~~lf~~~~---~-~~G~~~wlP~G~~i~~~ie~~ir~~~-~~G~~eV~tP~l~~~~Lw~~SGh~~~y 314 (652) T Consensus 15 ~f~~rdH~~Lg~~L~L~dfe~~akvsG~rf~~l~g~ga~Le~AL~~f~~d~~~~~Gy~eV~tP~iv~~~~~~~sG~~~~~ 94 (297) T cd00770 15 DFKPKDHVELGEKLDILDFERGAKVSGSRFYYLKGDGALLERALINFALDFLTKRGFTPVIPPFLVRKEVMEGTGQLPKF 94 (297) T ss_pred CCCCCCHHHHHHHCCCEECCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHCCCCCC T ss_conf 99988999999977881023224689877799888899999999999999999879989988530138998543578763 Q ss_pred CCCCCEEECCCCCCCCCCEEEECCCCHHHHHHHHHHCCCCHHHCCHHHHHHEEEECCCCCCC---CEEEEECCCCCCCCC Q ss_conf 55542010014567778237743431257777652012222310432000100012787645---200010563533442 Q gi|254781004|r 315 RANMFAVKCADDTIKDLRTFALKPMNCPGHVAVFNHGLKSYRELPVRLAEFGSVYRNEPSGS---LHGLMRVRGFTQDDA 391 (652) Q Consensus 315 ~~~mf~~~~~~~~~~~~~~~~LkPmncp~h~~i~~~~~~SYrdLPlrl~e~~~~~R~E~sg~---l~GL~R~ReF~~~Da 391 (652) T Consensus 95 ~e~~y~i~--------~~~~~Li~tae~~l~~~~~~~~~~~~dLPlr~~~~s~cfR~Eags~G~d~~GL~RvhqF~kvE~ 166 (297) T cd00770 95 DEQLYKVE--------GEDLYLIATAEVPLAALHRDEILEEEELPLKYAGYSPCFRKEAGSAGRDTRGLFRVHQFEKVEQ 166 (297) T ss_pred HHHHHCCC--------CHHHHHHHCCCCCEEEEEEEEECCHHHCCCCEEECCCHHHHCCCCCCCCCCCEEEEEECCEEEE T ss_conf 56521035--------5055554405666223442003177558865022463413203777755554578872110037 Q ss_pred EEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC Q ss_conf 10105376788789999998876655213321000146531125860357789999999998502121256675205555 Q gi|254781004|r 392 HVFCTKEQMFNECLKIHNLIISIYKDFGFEKIMVKLSTRPEKRVGSDALWDDAENIMKGVLDTIKNSSQDRINTGVLLGE 471 (652) Q Consensus 392 h~F~~~eq~~~e~~~~~~~~~~v~~~~g~~~~~~~ls~~~~~~~g~~~~~~~ae~~l~~~l~~~~~~~~~~~~~~~~~g~ 471 (652) T Consensus 167 ~~~c~pe~s~~~~e~~~~~~e~~l~~L~lpyrvv~~~tgdlg~~a~~---------------------~~DiE-~W~P~~ 224 (297) T cd00770 167 FVFTKPEESWEELEELISNAEEILQELGLPYRVVNICTGDLGFAAAK---------------------KYDIE-AWMPGQ 224 (297) T ss_pred EEECCHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCHHH---------------------EEEEE-EEEHHH T ss_conf 76168788999999999999999998155014501246555732222---------------------07656-310541 Q ss_pred CCCCCCCCCCCHHHHCCCCCCCCCCCHHHHCCCCCCCEEEEECCCEEEEEEEEECCCHHHHHHHHHHHHHHC-----CCC Q ss_conf 554554321100211033100121101110223467416731797213799640341037899999999738-----708 Q gi|254781004|r 472 GAFYGPKFEYILKDAIGRDWQCGTIQVDFNLPSRFNAFYVNSHSEKCHPVMIHRAVFGSIERFIGIMIENFK-----GNL 546 (652) Q Consensus 472 ~afygpkid~~~~d~~gr~~~~~tiq~df~~p~~f~l~y~~~dg~~~~pvmihr~~~Gs~eR~ia~liE~~~-----g~~ 546 (652) T Consensus 225 ~~y--------------~EvsS~Snc~DfQ-arRl~iry~~~~~~~~~~~htlngt~~A~~R~l~allEn~q~~dg~v~i 289 (297) T cd00770 225 GKY--------------REISSCSNCTDFQ-ARRLNIRYRDKKDGKKQYVHTLNGTALATPRTIVAILENYQTEDGSVVI 289 (297) T ss_pred CCE--------------EEEEECCCCHHHH-HHHCCCEEECCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCEEC T ss_conf 976--------------8861315400066-6523677734899952654881363208888999999727389987868 Q ss_pred CCCCCCE Q ss_conf 8733780 Q gi|254781004|r 547 PLWLSPI 553 (652) Q Consensus 547 P~wLAP~ 553 (652) T Consensus 290 P~~L~~y 296 (297) T cd00770 290 PEVLRPY 296 (297) T ss_pred CCCCCCC T ss_conf 8003131 |
SerRS is responsible for the attachment of serine to the 3' OH group of ribose of the appropriate tRNA. This domain It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. SerRS synthetase is a homodimer. |
| >PRK05431 seryl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.6e-22 Score=175.31 Aligned_cols=266 Identities=18% Similarity=0.321 Sum_probs=210.1 Q ss_pred HHHHHHHHHHHCCEEEECC----CCCCEEEEECCHHHHHHHHHHHHHH-HHHCCCEEEECCCCCCCCCCCCCCCCCCCCC Q ss_conf 3200887541144044226----7874356501078999999999998-8768963855543244310001121001255 Q gi|254781004|r 242 EKRDHRKLAREMDLFHIAE----DGSGVIFWHRKGWKIFQTLISYMRR-KIKDDYEEINTPQVLDQHLWQQSGHWDSYRA 316 (652) Q Consensus 242 ~~rdHr~lg~~~~lf~~~~----~~~G~~~wlP~G~~i~~~ie~~ir~-~~~~G~~eV~tP~l~~~~Lw~~SGh~~~y~~ 316 (652) T Consensus 135 ~~k~H~elge~l~liDfe~aaKiSGsRF~~Lkg~~A~LerALi~f~ld~~~~~Gy~~v~~P~lv~~~~~~gtGqlPkfe~ 214 (422) T PRK05431 135 EPKDHWELGEKLGILDFERAAKVSGSRFYVLKGDGARLERALIQFMLDLHTEEGYTEVIPPYLVNEESMYGTGQLPKFEE 214 (422) T ss_pred CCCCHHHHHHHCCCCCHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHCCCCCCHH T ss_conf 88778899876476104667755078704600489999999999999999987997996737636788744537974487 Q ss_pred CCCEEECCCCCCCCCCEEEECCCCHHHHHHHHHHCCCCHHHCCHHHHHHEEEECCCCCC---CCEEEEECCCCCCCCCEE Q ss_conf 54201001456777823774343125777765201222231043200010001278764---520001056353344210 Q gi|254781004|r 317 NMFAVKCADDTIKDLRTFALKPMNCPGHVAVFNHGLKSYRELPVRLAEFGSVYRNEPSG---SLHGLMRVRGFTQDDAHV 393 (652) Q Consensus 317 ~mf~~~~~~~~~~~~~~~~LkPmncp~h~~i~~~~~~SYrdLPlrl~e~~~~~R~E~sg---~l~GL~R~ReF~~~Dah~ 393 (652) T Consensus 215 ~~Y~i~--------~~dl~Li~TAEvpL~~~~~~eil~~~~LPik~~~~S~CFR~EAGs~GkdtrGl~RvHQF~KVE~f~ 286 (422) T PRK05431 215 DLFKIE--------DDDLYLIPTAEVPLTNLHRDEILDEEELPIKYTAYSPCFRSEAGSAGRDTRGLIRQHQFDKVELVK 286 (422) T ss_pred HHHHHC--------CCCEEEECCCCCCHHHHHHCCCCCHHHCCHHHEEECCHHHHCCCCCCCCCCCCEEEEEECEEEEEE T ss_conf 754105--------887176056532123344011336543984452788365303133675567612443000034335 Q ss_pred ECCHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC Q ss_conf 10537678878999999887665521332100014653112586035778999999999850212125667520555555 Q gi|254781004|r 394 FCTKEQMFNECLKIHNLIISIYKDFGFEKIMVKLSTRPEKRVGSDALWDDAENIMKGVLDTIKNSSQDRINTGVLLGEGA 473 (652) Q Consensus 394 F~~~eq~~~e~~~~~~~~~~v~~~~g~~~~~~~ls~~~~~~~g~~~~~~~ae~~l~~~l~~~~~~~~~~~~~~~~~g~~a 473 (652) T Consensus 287 ~~~pe~S~~~~e~~~~~~e~i~~~L~lpyrvv~~~sgdlg~~a~~~---------------------yDiE-~W~P~~~~ 344 (422) T PRK05431 287 FTKPEDSYAELEELTGNAEEILQKLELPYRVVLLCTGDMGFSAAKT---------------------YDLE-VWLPGQNT 344 (422) T ss_pred ECCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHH---------------------EEEE-EEECCCCC T ss_conf 3586779999999999999999875985023567876557665654---------------------5457-87156685 Q ss_pred CCCCCCCCCHHHHCCCCCCCCCCCHHHHCCCCCCCEEEEECCCEEEEEEEEECCCHHHHHHHHHHHHHH----C-CCCCC Q ss_conf 455432110021103310012110111022346741673179721379964034103789999999973----8-70887 Q gi|254781004|r 474 FYGPKFEYILKDAIGRDWQCGTIQVDFNLPSRFNAFYVNSHSEKCHPVMIHRAVFGSIERFIGIMIENF----K-GNLPL 548 (652) Q Consensus 474 fygpkid~~~~d~~gr~~~~~tiq~df~~p~~f~l~y~~~dg~~~~pvmihr~~~Gs~eR~ia~liE~~----~-g~~P~ 548 (652) T Consensus 345 y-------------~EvsS~Sn-c~d~Q-srRl~iry~~~~~~~~~~htlNgt~~-A~~R~l~ailEn~q~~dg~i~iP~ 408 (422) T PRK05431 345 Y-------------REISSCSN-CTDFQ-ARRANIRYRDEDGKPELVHTLNGSGL-AVGRTLVAILENYQQADGSVTIPE 408 (422) T ss_pred E-------------EEEEEECC-CCHHH-HHHCCCEEECCCCCEEEEEECCCCHH-HHHHHHHHHHHHCCCCCCCEECCH T ss_conf 4-------------52400015-01488-75302655179998664043115121-887899999884648998884781 Q ss_pred CCCCE Q ss_conf 33780 Q gi|254781004|r 549 WLSPI 553 (652) Q Consensus 549 wLAP~ 553 (652) T Consensus 409 ~L~~y 413 (422) T PRK05431 409 VLRPY 413 (422) T ss_pred HHHHH T ss_conf 31201 |
|
| >PRK00960 seryl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.4e-11 Score=98.11 Aligned_cols=249 Identities=19% Similarity=0.236 Sum_probs=161.7 Q ss_pred CCCCEEEEECCHHHHHHHHHHHHHHH-HHC-CCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCC-------- Q ss_conf 78743565010789999999999988-768-96385554324431000112100125554201001456777-------- Q gi|254781004|r 261 DGSGVIFWHRKGWKIFQTLISYMRRK-IKD-DYEEINTPQVLDQHLWQQSGHWDSYRANMFAVKCADDTIKD-------- 330 (652) Q Consensus 261 ~~~G~~~wlP~G~~i~~~ie~~ir~~-~~~-G~~eV~tP~l~~~~Lw~~SGh~~~y~~~mf~~~~~~~~~~~-------- 330 (652) T Consensus 210 ~gRGQW~y~P~~t~LFRafE~ii~Ee~i~~lGf~e~lFPKLiplevm~kmryleGlp~gmYYVCpP--K-RDPe~feef~ 286 (516) T PRK00960 210 PGRGQWFYTPPMAKLFRAFEEIILEECIEKLGFDECLFPKLIPLDVMYKMRYLEGLPEGMYYVCPP--K-RDPEMFEEFV 286 (516) T ss_pred CCCCCEEECCHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCHHHHHHHHCCCCCCCCCCEEECCC--C-CCHHHHHHHH T ss_conf 888742437758899999999999997432376100013455299997733012699872786699--8-9868999997 Q ss_pred -------------------CCEEEECCCCHHHHHHHHHHCCCCHHHCCHHHHH-HEEEECCCCCCCCEEEEECCCCCCCC Q ss_conf -------------------8237743431257777652012222310432000-10001278764520001056353344 Q gi|254781004|r 331 -------------------LRTFALKPMNCPGHVAVFNHGLKSYRELPVRLAE-FGSVYRNEPSGSLHGLMRVRGFTQDD 390 (652) Q Consensus 331 -------------------~~~~~LkPmncp~h~~i~~~~~~SYrdLPlrl~e-~~~~~R~E~sg~l~GL~R~ReF~~~D 390 (652) T Consensus 287 ~e~~i~~EiPi~~lKe~l~~P~yvlapAQCePFy~fl~~e~v~~d~lPik~FDrSGwtyRwE~GG-~~GleRV~EF~RiE 365 (516) T PRK00960 287 NEMMIKKEIPIDLLKEKLRDPGYVLAPAQCEPFYQFLDHELVDVDELPIKFFDKSGWTYRWEGGG-AKGLDRVNEFLRIE 365 (516) T ss_pred HHHEEECCCCHHHHHHHHCCCCCEEEECCCCCHHHHHCCCCCCCCCCCEEEEECCCCEEEECCCC-CCCHHHHHHHHEEE T ss_conf 77334053668999986128861351024993788736772565558657885588626404787-43235550101477 Q ss_pred CEEECCHHHHHHHHHHH-HHHHHHHHHHHCCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC Q ss_conf 21010537678878999-99988766552133210001465311258603577899999999985021212566752055 Q gi|254781004|r 391 AHVFCTKEQMFNECLKI-HNLIISIYKDFGFEKIMVKLSTRPEKRVGSDALWDDAENIMKGVLDTIKNSSQDRINTGVLL 469 (652) Q Consensus 391 ah~F~~~eq~~~e~~~~-~~~~~~v~~~~g~~~~~~~ls~~~~~~~g~~~~~~~ae~~l~~~l~~~~~~~~~~~~~~~~~ 469 (652) T Consensus 366 ~VW~gtpe-~ve~~r~~~~~y~~~~ae~LdLE-~w~ev~ddP---------fylegr~~e----~r------~iE~p--- 421 (516) T PRK00960 366 CVWMGTPE-FVEEVRDDTLKYAHILAEKLDLE-YWTEVGDDP---------FYLEGRKLE----DR------GIEFP--- 421 (516) T ss_pred EEEECCHH-HHHHHHHHHHHHHHHHHHHHCHH-HHEEECCCC---------HHHCCCCCC----CC------CCCCC--- T ss_conf 78846889-99999888999999988774324-422305675---------032256544----55------64368--- Q ss_pred CCCCCCCCCCCCCHHHHC---CCCCCCC--CCCHHHHCCCCCCCEEEEECCCEEEEEEEEECCCH-HHHHHHHHHHHHHC Q ss_conf 555545543211002110---3310012--11011102234674167317972137996403410-37899999999738 Q gi|254781004|r 470 GEGAFYGPKFEYILKDAI---GRDWQCG--TIQVDFNLPSRFNAFYVNSHSEKCHPVMIHRAVFG-SIERFIGIMIENFK 543 (652) Q Consensus 470 g~~afygpkid~~~~d~~---gr~~~~~--tiq~df~~p~~f~l~y~~~dg~~~~pvmihr~~~G-s~eR~ia~liE~~~ 543 (652) T Consensus 422 -----~vp~ye~~~~LP~~~~e~k~v~v~s~nVhG~hf~eGF~VK~--~~g~~-----~WtGCtG~GL~RWv~gFLAQ~G 489 (516) T PRK00960 422 -----DVPKYEMRLWLPHIKEERKGVAVTSANIHGTHFVEGFNVKD--YKGRK-----LWTGCTGVGLTRWVIGFLAQKG 489 (516) T ss_pred -----CCCCEEEEEECCCCCCCCCEEEEEEEEECCCCCCCCCCCEE--CCCCE-----EECCCCCCCHHHHHHHHHHHCC T ss_conf -----88854679965764776772688886314753567652200--35873-----1137764457899999998707 Q ss_pred C---CCCCC Q ss_conf 7---08873 Q gi|254781004|r 544 G---NLPLW 549 (652) Q Consensus 544 g---~~P~w 549 (652) T Consensus 490 fd~~~WPe~ 498 (516) T PRK00960 490 FDPDNWPEE 498 (516) T ss_pred CCCCCCCHH T ss_conf 981216499 |
|
| >TIGR00414 serS seryl-tRNA synthetase; InterPro: IPR002317 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.3e-10 Score=92.98 Aligned_cols=283 Identities=20% Similarity=0.356 Sum_probs=209.9 Q ss_pred CCHHHHHHHHH--HHHHHHHH--HHHHHHHHCCEEEECC----CCCCEEEEECCHHHHHHHHHHHHHH-HH-HCCCEEEE Q ss_conf 79889999999--99975320--0887541144044226----7874356501078999999999998-87-68963855 Q gi|254781004|r 226 NTQQELTQYLY--FLEESEKR--DHRKLAREMDLFHIAE----DGSGVIFWHRKGWKIFQTLISYMRR-KI-KDDYEEIN 295 (652) Q Consensus 226 ~~~~~l~~~~~--~~eea~~r--dHr~lg~~~~lf~~~~----~~~G~~~wlP~G~~i~~~ie~~ir~-~~-~~G~~eV~ 295 (652) T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~d~~~~~~~~g~~~~~~~~~~~~~~~al~~~~l~~~~~~~g~~~~~ 226 (460) T TIGR00414 147 YDEEVKKWGTPPLPSFDFKPKDLPHWELGEKLGLLDFERAVKLAGSRFYYLKGDGAKLERALINFMLDLLREKNGYSELY 226 (460) T ss_pred HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEC T ss_conf 01356664100122001331112156788770651013333441010121321367899999999998644322640101 Q ss_pred CCCCCCCCCCCCCC---CCCCCCCCCCEEECCCCCCCCCCEEEECCCCHHHHHHHHHHCCCCH--HHCCHHHHHHEEEEC Q ss_conf 54324431000112---1001255542010014567778237743431257777652012222--310432000100012 Q gi|254781004|r 296 TPQVLDQHLWQQSG---HWDSYRANMFAVKCADDTIKDLRTFALKPMNCPGHVAVFNHGLKSY--RELPVRLAEFGSVYR 370 (652) Q Consensus 296 tP~l~~~~Lw~~SG---h~~~y~~~mf~~~~~~~~~~~~~~~~LkPmncp~h~~i~~~~~~SY--rdLPlrl~e~~~~~R 370 (652) T Consensus 227 ~p~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-----~~~~~~~l~~t~e~~~~~~~~~~~~~~~~~~lp~~~~~~~~cfr 301 (460) T TIGR00414 227 PPYLVNEELLDGTGFNPQLPKFEEDLFKLED-----TDDEKLYLIPTAEVPLTNLHRDEILDLPSEELPIKYTGYSPCFR 301 (460) T ss_pred CCHHHHHHHHHHCCCCCCCCCHHHHHHHHCC-----CCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCEEHCCCCHHHH T ss_conf 4035423443102456556530234432126-----77750465201000122222000102652103400000220233 Q ss_pred CCCCC---CCEEEEECCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCC----HHHHHH Q ss_conf 78764---52000105635334421010537678878999999887665521332100014653112586----035778 Q gi|254781004|r 371 NEPSG---SLHGLMRVRGFTQDDAHVFCTKEQMFNECLKIHNLIISIYKDFGFEKIMVKLSTRPEKRVGS----DALWDD 443 (652) Q Consensus 371 ~E~sg---~l~GL~R~ReF~~~Dah~F~~~eq~~~e~~~~~~~~~~v~~~~g~~~~~~~ls~~~~~~~g~----~~~~~~ 443 (652) T Consensus 302 ~eag~~g~~~~g~~r~h~f~k~e~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~p~~~~~~~~gd~g~~~~~~yd~e~W~p 381 (460) T TIGR00414 302 SEAGSYGKDTKGLIRVHQFNKVELVKFCKPEESWEELEELLSDAEKILQELELPYRVLNLCTGDLGFGAAKKYDLEVWLP 381 (460) T ss_pred HHCCCCCCCCHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCHHHHEECCCCCCCCCCCCEEEEEEEE T ss_conf 32134554100012111003102456635401489999998789999997437511100012434642011010013410 Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCHHHHCCCCCCCEEEEECCCEEEEEEE Q ss_conf 99999999985021212566752055555545543211002110331001211011102234674167317972137996 Q gi|254781004|r 444 AENIMKGVLDTIKNSSQDRINTGVLLGEGAFYGPKFEYILKDAIGRDWQCGTIQVDFNLPSRFNAFYVNSHSEKCHPVMI 523 (652) Q Consensus 444 ae~~l~~~l~~~~~~~~~~~~~~~~~g~~afygpkid~~~~d~~gr~~~~~tiq~df~~p~~f~l~y~~~dg~~~~pvmi 523 (652) T Consensus 382 ~~~-----------------------g-g~y-------------~e~~~~~~-~~d~-~~~~~~~~~~~~~~~~~~~~~~ 422 (460) T TIGR00414 382 GQN-----------------------G-GTY-------------REISSCSN-CTDF-QARRLNIRYKDKGGGKRENEYV 422 (460) T ss_pred CCC-----------------------C-CCC-------------CEECCCCC-CHHH-HHHHHHHHHHHCCCCCCCCCEE T ss_conf 467-----------------------8-741-------------10001233-1145-6665443332203665321000 Q ss_pred EECCCH---HHHHHHHHHHHHHC---C--CCCCCCCCE Q ss_conf 403410---37899999999738---7--088733780 Q gi|254781004|r 524 HRAVFG---SIERFIGIMIENFK---G--NLPLWLSPI 553 (652) Q Consensus 524 hr~~~G---s~eR~ia~liE~~~---g--~~P~wLAP~ 553 (652) T Consensus 423 ~-~lng~~~~~~r~~~~~~en~~~~~g~~~~p~~l~~~ 459 (460) T TIGR00414 423 H-TLNGTALAVGRTLVAILENYQDEDGSVEVPEVLRKY 459 (460) T ss_pred E-ECCCCHHHHHHHHHHHHHHHCCCCCCEECHHHHHCC T ss_conf 1-003312345678887776410557745412554113 |
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases . Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa .; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm. |
| >PRK07080 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.00011 Score=52.26 Aligned_cols=246 Identities=15% Similarity=0.154 Sum_probs=147.0 Q ss_pred CCCCEEEEECCHHHHHHHHHHHHHHH-HHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEC-CCCC----------- Q ss_conf 78743565010789999999999988-7689638555432443100011210012555420100-1456----------- Q gi|254781004|r 261 DGSGVIFWHRKGWKIFQTLISYMRRK-IKDDYEEINTPQVLDQHLWQQSGHWDSYRANMFAVKC-ADDT----------- 327 (652) Q Consensus 261 ~~~G~~~wlP~G~~i~~~ie~~ir~~-~~~G~~eV~tP~l~~~~Lw~~SGh~~~y~~~mf~~~~-~~~~----------- 327 (652) T Consensus 36 gvdGlYgRs~~fE~vv~~l~a~i~~~g~~~~~evlrFPPvm~r~~fE~s~YlkSF-P~L~GtV~~f~G~e~~h~~ll~~~ 114 (318) T PRK07080 36 GVDGLYGRSGLFERVVDALDALITRLGADQGAEVLRFPPAMSRAEFERSGYLKSF-PQLAGTVHSFCGNEREHRRLLACL 114 (318) T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHCCHHHHC-CHHHCCEECCCCCCHHHHHHHHHH T ss_conf 8874303615499999999999987364458715766998865553330465525-002010010468968999999998 Q ss_pred --------CCCCCEEEECCCCHHHHHHHHHHCCCCHHHCC---HHHHHHEEEECCCCCCCCEEEEECCCCCCCCCEEECC Q ss_conf --------77782377434312577776520122223104---3200010001278764520001056353344210105 Q gi|254781004|r 328 --------IKDLRTFALKPMNCPGHVAVFNHGLKSYRELP---VRLAEFGSVYRNEPSGSLHGLMRVRGFTQDDAHVFCT 396 (652) Q Consensus 328 --------~~~~~~~~LkPmncp~h~~i~~~~~~SYrdLP---lrl~e~~~~~R~E~sg~l~GL~R~ReF~~~Dah~F~~ 396 (652) T Consensus 115 ~~g~dWt~~~~ptdvvLtPAACyPvYP~~a~rG----~LP~~G~~~dv~~yCFRhEPS~---dp~Rmq~FRMrEyV~iGt 187 (318) T PRK07080 115 DRGEDWTESQKPTDVVLTPAACYPVYPVVASRG----PLPAGGRIVDVFSYCFRHEPSL---DPARMQLFRMREYVRIGT 187 (318) T ss_pred HCCCCCCCCCCCCCEEECCCCCCCCCHHHCCCC----CCCCCCEEEEEEEEHHCCCCCC---CHHHHHHHHCEEEEEECC T ss_conf 718984223576645750401142537660278----8988874898764210178988---858888644044577179 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC Q ss_conf 37678878999999887665521332100014653112586035778999999999850212125667520555555455 Q gi|254781004|r 397 KEQMFNECLKIHNLIISIYKDFGFEKIMVKLSTRPEKRVGSDALWDDAENIMKGVLDTIKNSSQDRINTGVLLGEGAFYG 476 (652) Q Consensus 397 ~eq~~~e~~~~~~~~~~v~~~~g~~~~~~~ls~~~~~~~g~~~~~~~ae~~l~~~l~~~~~~~~~~~~~~~~~g~~afyg 476 (652) T Consensus 188 ~e~v~a~R~~W~~r~~~~~~~L~L~~-~vd~AnDPF--FGr~G-k~~a~~Qreq~L-----------KfElli------- 245 (318) T PRK07080 188 PEQILAFRQRWIERGTRMADALGLPV-EIDVANDPF--FGRGG-KIVADSQREQNL-----------KFELLI------- 245 (318) T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCC-CEECCCCCC--CCCHH-HHHHHHHHHHHC-----------CEEEEE------- T ss_conf 99999999999999999999759985-231157875--46307-777557776421-----------347999------- Q ss_pred CCCCCCHHHHCCCCCCCCC-CCHHHHCCCCCCCEEEEECCCEEEEEEEEECCCH-HHHHHHHHHHHHHCC---CCCCC Q ss_conf 4321100211033100121-1011102234674167317972137996403410-378999999997387---08873 Q gi|254781004|r 477 PKFEYILKDAIGRDWQCGT-IQVDFNLPSRFNAFYVNSHSEKCHPVMIHRAVFG-SIERFIGIMIENFKG---NLPLW 549 (652) Q Consensus 477 pkid~~~~d~~gr~~~~~t-iq~df~~p~~f~l~y~~~dg~~~~pvmihr~~~G-s~eR~ia~liE~~~g---~~P~w 549 (652) T Consensus 246 -----pi~~~-~~ptAc~S~NyH~dhFG~~~~i--~~adg~-----~AHT~CVgFGlERlalAL~~~HGlD~~~WP~~ 310 (318) T PRK07080 246 -----PIESD-ARPTACMSFNYHMDHFGLTWGI--RTADGA-----VAHTGCVGFGLERLALALFRHHGLDPAAWPAA 310 (318) T ss_pred -----ECCCC-CCCEEEEEECHHHHHCCCCCCC--CCCCCC-----EEEHHHHHCCHHHHHHHHHHHCCCCHHHCCHH T ss_conf -----73689-9971589621145550366674--047887-----10010211159999999998719981437788 |
|
| >PRK12325 prolyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=0 Score=753.43 Aligned_cols=366 Identities=20% Similarity=0.280 Sum_probs=315.1 Q ss_pred EEECCCCCCEEEEECCHHHHHHHHHHHHHHHHH-CCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCEE Q ss_conf 442267874356501078999999999998876-8963855543244310001121001255542010014567778237 Q gi|254781004|r 256 FHIAEDGSGVIFWHRKGWKIFQTLISYMRRKIK-DDYEEINTPQVLDQHLWQQSGHWDSYRANMFAVKCADDTIKDLRTF 334 (652) Q Consensus 256 f~~~~~~~G~~~wlP~G~~i~~~ie~~ir~~~~-~G~~eV~tP~l~~~~Lw~~SGh~~~y~~~mf~~~~~~~~~~~~~~~ 334 (652) T Consensus 30 g~i~~~~~Gl~~wlP~G~~i~~~le~~ir~e~~~~G~~eV~tP~l~~~~Lw~~SGh~~~y~~~mf~~-----~d~~~~~~ 104 (438) T PRK12325 30 GMIRQQAAGIYSWLPLGLKVLKKIENIVREEQNRAGAIEILMPTIQPADLWRESGRYDAYGKEMLRI-----KDRHDREM 104 (438) T ss_pred CCCCCCCCCCCEECCCHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHCCHHHHHHHHCEE-----ECCCCCEE T ss_conf 7756346873221605899999999999999997499799877658778998628764555742121-----34777743 Q ss_pred EECCCCHHHHHHHHHHCCCCHHHCCHHHHHHEEEECCCCCCCCEEEEECCCCCCCCCEEE-CCHHHHHHHHHHHHHHHHH Q ss_conf 743431257777652012222310432000100012787645200010563533442101-0537678878999999887 Q gi|254781004|r 335 ALKPMNCPGHVAVFNHGLKSYRELPVRLAEFGSVYRNEPSGSLHGLMRVRGFTQDDAHVF-CTKEQMFNECLKIHNLIIS 413 (652) Q Consensus 335 ~LkPmncp~h~~i~~~~~~SYrdLPlrl~e~~~~~R~E~sg~l~GL~R~ReF~~~Dah~F-~~~eq~~~e~~~~~~~~~~ 413 (652) T Consensus 105 ~l~Pmnc~~~~~i~~~~~~SYRdLPlrl~q~g~~~R~E~sp-~~GLlRvReF~m~Dah~F~~~~e~~~~~~~~v~~~y~~ 183 (438) T PRK12325 105 LYGPTNEEMITDIFRSYVKSYKDLPLNLYHIQWKFRDEIRP-RFGVMRGREFLMKDAYSFDLDEEGARKSYNRMFVAYLR 183 (438) T ss_pred CCCCCCCHHHHHHHHHCCCCHHHCCHHHHHHHHEECCCCCC-CCCCCEEEEEECCCHHHCCCCHHHHHHHHHHHHHHHHH T ss_conf 13899849999999740342654257887644401120267-64410122333041543246889999999999999999 Q ss_pred HHHHHCCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC------------ Q ss_conf 66552133210001465311258603577899999999985021212566752055555545543211------------ Q gi|254781004|r 414 IYKDFGFEKIMVKLSTRPEKRVGSDALWDDAENIMKGVLDTIKNSSQDRINTGVLLGEGAFYGPKFEY------------ 481 (652) Q Consensus 414 v~~~~g~~~~~~~ls~~~~~~~g~~~~~~~ae~~l~~~l~~~~~~~~~~~~~~~~~g~~afygpkid~------------ 481 (652) T Consensus 184 if~~lgl~~~~v~ad~g~igg~~s~Ef~~~~~~ged~i~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (438) T PRK12325 184 TFKRLGLKAIPMRADTGPIGGDLSHEFHILAETGESTVFYD------------KDFLDLPVPGEDIDYDADLQDIVDEWT 251 (438) T ss_pred HHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHCCCHHEEEC------------HHHHHCCCCCCCCCHHHHHHHHHHHHH T ss_conf 99980994489982367667751267476652265024661------------333422567655462356678998887 Q ss_pred ---CHHHHCCCCCCCC-----------------CCCHHHHCCCCCCCEEEEECCCEEEEEEEEECCCH-HHHHHHHHHHH Q ss_conf ---0021103310012-----------------11011102234674167317972137996403410-37899999999 Q gi|254781004|r 482 ---ILKDAIGRDWQCG-----------------TIQVDFNLPSRFNAFYVNSHSEKCHPVMIHRAVFG-SIERFIGIMIE 540 (652) Q Consensus 482 ---~~~d~~gr~~~~~-----------------tiq~df~~p~~f~l~y~~~dg~~~~pvmihr~~~G-s~eR~ia~liE 540 (652) T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iEvG~if~lg~~ys~~~~~~~~~~dg~~~~~---~m~~~GIgieR~ia~liE 328 (438) T PRK12325 252 SLYAATDEMHDEAKFAAVPEERRLSARGIEVGHIFYFGTKYSEPMNAKVQGPDGKEVPV---HMGSYGIGVSRLVAAIIE 328 (438) T ss_pred HHHHHHHHHCCHHHCCCCCHHHHEECCCEEEEEEEECCCCCCHHCCCCCCCCCCCCCCE---EEECCCCCHHHHHHHHHH T ss_conf 65034664346755376675663011330331243045301522067444877773222---554133428789999999 Q ss_pred HH----CCCCCCCCCCEEEEEEEC---CHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHCCCCEEEEECHHH Q ss_conf 73----870887337808999857---96689999999999998798899975896636766655434898899987425 Q gi|254781004|r 541 NF----KGNLPLWLSPIQAIVTTI---TSSAVEYAQEIANLLKSHHLSIETDFRNETINYKIREHSIKKIPIIIICGDKE 613 (652) Q Consensus 541 ~~----~g~~P~wLAP~QV~Iipi---~e~~~eya~~i~~~L~~~girV~~Ddr~~~~G~Kir~a~l~giP~~ivIG~ke 613 (652) T Consensus 329 ~~~d~~G~~wP~wlAP~QV~Iipi~~~~~~~~~~A~~l~~~L~~~girv~~Ddr~e~lG~Kir~a~l~giPy~ivVG~ke 408 (438) T PRK12325 329 ASHDDKGIIWPESVAPFKVGIINLKQGDAACDAACEKLYAALTAAGVDVLYDDTDERAGAKFATMDLIGLPWQIIVGPKG 408 (438) T ss_pred HHCCCCCCCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCH T ss_conf 83646885467674865799997069979999999999999997899899989999972999999866999899990780 Q ss_pred HHCCCEEEEECCCCCEEEECHHHHHHHHH Q ss_conf 32581899988988663342999999998 Q gi|254781004|r 614 ASERSIGIRRFGSTTTQKVSLLDAIPILT 642 (652) Q Consensus 614 ~e~~~Vtir~R~~~~~~~i~lee~i~~l~ 642 (652) T Consensus 409 ~e~g~V~vR~R~~~~~~~v~ide~i~~lk 437 (438) T PRK12325 409 LAEGKVELKDRKTGEREELSVEAAINRLK 437 (438) T ss_pred HHCCEEEEEECCCCCEEEEEHHHHHHHHC T ss_conf 54698999998899606764999999860 |
|
| >PRK09194 prolyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=0 Score=652.53 Aligned_cols=392 Identities=19% Similarity=0.279 Sum_probs=324.2 Q ss_pred HHHHHHHHHHHHHCCEEEECCCCCCEEEEECCHHHHHHHHHHHHHHHHHC-CCEEEECCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 75320088754114404422678743565010789999999999988768-96385554324431000112100125554 Q gi|254781004|r 240 ESEKRDHRKLAREMDLFHIAEDGSGVIFWHRKGWKIFQTLISYMRRKIKD-DYEEINTPQVLDQHLWQQSGHWDSYRANM 318 (652) Q Consensus 240 ea~~rdHr~lg~~~~lf~~~~~~~G~~~wlP~G~~i~~~ie~~ir~~~~~-G~~eV~tP~l~~~~Lw~~SGh~~~y~~~m 318 (652) T Consensus 17 dae~~Sh~Ll~r---aG~Ir~~~sGiy~~LPlg~rvl~Kie~IIr~em~~iGa~Ev~mp~l~p~elW~~sgR~~~~g~el 93 (570) T PRK09194 17 DAEVISHQLMLR---AGYIRKLASGIYTYLPLGLRVLRKIENIVREEMNKIGAQEVLMPALQPAELWQESGRWEKYGPEL 93 (570) T ss_pred CCCHHHHHHHHH---CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHCCCHHHCCHHH T ss_conf 324566999987---06734143772554243699999999999999986498798535679778987618821236134 Q ss_pred CEEECCCCCCCCCCEEEECCCCHHHHHHHHHHCCCCHHHCCHHHHHHEEEECCCCCCCCEEEEECCCCCCCCCEEECC-H Q ss_conf 201001456777823774343125777765201222231043200010001278764520001056353344210105-3 Q gi|254781004|r 319 FAVKCADDTIKDLRTFALKPMNCPGHVAVFNHGLKSYRELPVRLAEFGSVYRNEPSGSLHGLMRVRGFTQDDAHVFCT-K 397 (652) Q Consensus 319 f~~~~~~~~~~~~~~~~LkPmncp~h~~i~~~~~~SYrdLPlrl~e~~~~~R~E~sg~l~GL~R~ReF~~~Dah~F~~-~ 397 (652) T Consensus 94 ~r-----~kDR~~~~~~L~PThEE~it~lv~~~i~SYkqLP~~lYQIqtKfRDE~RP-R~GllR~REF~MKDaYSFd~~~ 167 (570) T PRK09194 94 LR-----LKDRHGRDFVLGPTHEEVITDLVRNEIKSYKQLPLNLYQIQTKFRDEIRP-RFGLMRGREFIMKDAYSFHADE 167 (570) T ss_pred EE-----EECCCCCEEEECCCCHHHHHHHHHHHHCCHHHCCHHEECCCCEECCCCCC-CCCCHHHHHHHHHCCCCCCCCH T ss_conf 69-----85278985653787389999999985113764680200132333477887-6762345653451245666998 Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC------------- Q ss_conf 7678878999999887665521332100014653112586035778999999999850212125667------------- Q gi|254781004|r 398 EQMFNECLKIHNLIISIYKDFGFEKIMVKLSTRPEKRVGSDALWDDAENIMKGVLDTIKNSSQDRIN------------- 464 (652) Q Consensus 398 eq~~~e~~~~~~~~~~v~~~~g~~~~~~~ls~~~~~~~g~~~~~~~ae~~l~~~l~~~~~~~~~~~~------------- 464 (652) T Consensus 168 e~l~~tY~~~~~AY~~IF~rlgL~~~~v~ADsG~iGG~~ShEF~~~s~~GED~i~~C~~c~yaaN~E~A~~~~~~~~~~~ 247 (570) T PRK09194 168 ESLDETYDAMYQAYSRIFTRLGLDFRAVEADSGAIGGSASHEFMVLAESGEDTIVYSDESDYAANIEKAEALPPPEPRAA 247 (570) T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEEEEECCCCCCEEEEECCCCHHHHHHHHHCCCCCCCCCC T ss_conf 99999999999999999998098629999146675886652378763789717999689760564877511477666754 Q ss_pred -----------------------------------C-------------------CCC---------------------- Q ss_conf -----------------------------------5-------------------205---------------------- Q gi|254781004|r 465 -----------------------------------T-------------------GVL---------------------- 468 (652) Q Consensus 465 -----------------------------------~-------------------~~~---------------------- 468 (652) T Consensus 248 ~~~~~e~v~TP~~~TIe~l~~~~~v~~~~~iKtl~~~~~~~~~~~~v~v~irGD~evNe~Kl~~~~~~~~l~~a~~eei~ 327 (570) T PRK09194 248 PTEELEKVDTPNAKTIEELAEFLNVPAEKTVKTLLVKADEEGEGELVAVLVRGDHELNEVKLENLLGAAPLELATEEEIR 327 (570) T ss_pred CCCCCEEECCCCCCHHHHHHHHHCCCHHHHEEEEEEEEECCCCCCEEEEEECCCCCCCHHHHHHCCCCCCCCCCCHHHHH T ss_conf 30003042599962199999874999888135689984217887358998226520048988740375312248999999 Q ss_pred ---CCCCCCCCC------------------------CCCCCHHH--------------------------------HCCC Q ss_conf ---555554554------------------------32110021--------------------------------1033 Q gi|254781004|r 469 ---LGEGAFYGP------------------------KFEYILKD--------------------------------AIGR 489 (652) Q Consensus 469 ---~g~~afygp------------------------kid~~~~d--------------------------------~~gr 489 (652) T Consensus 328 ~~~g~~~G~iGPv~~~v~ii~D~~v~~~~n~v~GAN~~d~H~~~vn~~RD~~~~~~~Di~~v~~GD~Cp~c~~~L~~~rg 407 (570) T PRK09194 328 KLFGAPPGFLGPVNLPIPIIADRSVADMSNFVVGANEDDKHYVGVNWGRDFPVPEVADLRNVVEGDPSPDGGGTLKIARG 407 (570) T ss_pred HHCCCCCCCCCCCCCCCEEEEEHHHHHHCCHHCCCCCCCCEEECCCCCCCCCCCCCCCHHHCCCCCCCCCCCCEEEEEEE T ss_conf 75189877556667881499703452100010035887645406765656786431125552568889889971277403 Q ss_pred CCCCCCCCHHHHCCCCCCCEEEEECCCEEEEEEEEECCCHH-HHHHHHHHHHHH----CCCCCCCCCCEEEEEEECC--- Q ss_conf 10012110111022346741673179721379964034103-789999999973----8708873378089998579--- Q gi|254781004|r 490 DWQCGTIQVDFNLPSRFNAFYVNSHSEKCHPVMIHRAVFGS-IERFIGIMIENF----KGNLPLWLSPIQAIVTTIT--- 561 (652) Q Consensus 490 ~~~~~tiq~df~~p~~f~l~y~~~dg~~~~pvmihr~~~Gs-~eR~ia~liE~~----~g~~P~wLAP~QV~Iipi~--- 561 (652) T Consensus 408 IEVGHiF~LGtkYS~~m~a~~~d~~Gk~~p~~M---GCYGIGVsRllaAiiEq~~De~Gi~WP~~IAPf~V~Ii~~~~~~ 484 (570) T PRK09194 408 IEVGHIFQLGTKYSEAMNATFLDENGKAQPLTM---GCYGIGVSRLVAAAIEQNHDERGIIWPKAIAPFDVHIVPVNMKD 484 (570) T ss_pred EEEEEEECCCCCCCHHCCCEEECCCCCCCCCEE---EEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCC T ss_conf 688876312330146209879998898976145---62002467899999998377775407888688499999679998 Q ss_pred HHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHCCCCEEEEECHHHHHCCCEEEEECCCCCEEEECHHHHHHHH Q ss_conf 66899999999999987988999758966367666554348988999874253258189998898866334299999999 Q gi|254781004|r 562 SSAVEYAQEIANLLKSHHLSIETDFRNETINYKIREHSIKKIPIIIICGDKEASERSIGIRRFGSTTTQKVSLLDAIPIL 641 (652) Q Consensus 562 e~~~eya~~i~~~L~~~girV~~Ddr~~~~G~Kir~a~l~giP~~ivIG~ke~e~~~Vtir~R~~~~~~~i~lee~i~~l 641 (652) T Consensus 485 ~~~~~~ae~iy~~L~~~GidVllDDR~er~G~Kf~DaDLIGiP~~vvvGkk~l~~g~vEvk~R~~~~~~~v~~~el~~~v 564 (570) T PRK09194 485 EEVRELAEKLYAELLAAGIDVLLDDRKERPGVKFADAELIGIPHRIVVGKRGLAEGIVEYKNRRTGEKEEVKLDELVEFL 564 (570) T ss_pred HHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCEEEEEEECCCCEEEECHHHHHHHH T ss_conf 89999999999999978998999899988536667516418997999926740158599999068975886199999999 Q ss_pred HH Q ss_conf 87 Q gi|254781004|r 642 TK 643 (652) Q Consensus 642 ~~ 643 (652) T Consensus 565 ~~ 566 (570) T PRK09194 565 KE 566 (570) T ss_pred HH T ss_conf 99 |
|
| >TIGR00409 proS_fam_II prolyl-tRNA synthetase; InterPro: IPR004500 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=100.00 E-value=0 Score=624.85 Aligned_cols=378 Identities=19% Similarity=0.318 Sum_probs=326.2
Q ss_pred EECCCCCCEEEEECCHHHHHHHHHHHHHHHHHC-C-CEEEECCCCCC-CCCCCCCCCCCCCCC---CCCEEECCCCCCCC
Q ss_conf 422678743565010789999999999988768-9-63855543244-310001121001255---54201001456777
Q gi|254781004|r 257 HIAEDGSGVIFWHRKGWKIFQTLISYMRRKIKD-D-YEEINTPQVLD-QHLWQQSGHWDSYRA---NMFAVKCADDTIKD 330 (652)
Q Consensus 257 ~~~~~~~G~~~wlP~G~~i~~~ie~~ir~~~~~-G-~~eV~tP~l~~-~~Lw~~SGh~~~y~~---~mf~~~~~~~~~~~ 330 (652)
T Consensus 32 fIR~~~SGlY~~LPL~~rVL~Kv~~ivreeM~~~GGA~E~~lp~~~~la~LW~~SGRW~~YG~seGELl~-----lkDR~ 106 (620)
T TIGR00409 32 FIRRLGSGLYNWLPLGLRVLKKVENIVREEMNKDGGAIEVLLPALQPLAELWQESGRWDTYGPSEGELLR-----LKDRK 106 (620)
T ss_pred EEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEE-----EEECC
T ss_conf 4772434144565789999998899999862267853346676677899987540753246865433667-----65268
Q ss_pred CCEEEECCCCHHHHHHHHHHCCCCHHHCCHHHHHHEEEECCCCCCCCEEEEECCCCCCCCCEEECC-HHHHHHHHHHHHH
Q ss_conf 823774343125777765201222231043200010001278764520001056353344210105-3767887899999
Q gi|254781004|r 331 LRTFALKPMNCPGHVAVFNHGLKSYRELPVRLAEFGSVYRNEPSGSLHGLMRVRGFTQDDAHVFCT-KEQMFNECLKIHN 409 (652)
Q Consensus 331 ~~~~~LkPmncp~h~~i~~~~~~SYrdLPlrl~e~~~~~R~E~sg~l~GL~R~ReF~~~Dah~F~~-~eq~~~e~~~~~~ 409 (652)
T Consensus 107 ~r~f~LgpT~EEvIT~l~~~~i~SYKqLP~~lYQI~tKFRDEiRP-RFGl~RgREFiMKDAYSFH~~~ESL~~ty~~m~~ 185 (620)
T TIGR00409 107 GREFVLGPTHEEVITDLVRNEIKSYKQLPLNLYQIQTKFRDEIRP-RFGLLRGREFIMKDAYSFHSDEESLDATYQKMDQ 185 (620)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCC-CCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 887356786655689999998754530683010045121442048-8760001232302425544787679999889999
Q ss_pred HHHHHHHHHCCCCCE-ECCCCC-CCCCCCCHHHHHHHHHHHHHHHHHH-CCCCCC-CCCCCCCCCC-----CC-------
Q ss_conf 988766552133210-001465-3112586035778999999999850-212125-6675205555-----55-------
Q gi|254781004|r 410 LIISIYKDFGFEKIM-VKLSTR-PEKRVGSDALWDDAENIMKGVLDTI-KNSSQD-RINTGVLLGE-----GA------- 473 (652)
Q Consensus 410 ~~~~v~~~~g~~~~~-~~ls~~-~~~~~g~~~~~~~ae~~l~~~l~~~-~~~~~~-~~~~~~~~g~-----~a------- 473 (652)
T Consensus 186 aY~~IF~rlGldFR~iV~ADSGdaIGG~~S~EF~vL~~~GEDti~~~~h~~dyaAlNiE~A~~~~~~~P~~~~~~~~~~~ 265 (620)
T TIGR00409 186 AYSNIFSRLGLDFRPIVQADSGDAIGGSASHEFMVLAESGEDTIVYSDHESDYAALNIELAEALKPGEPRNAPTAELKKV 265 (620)
T ss_pred HHHHHHHHCCCCCCEEEEECCCCCCCCCCCHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCCCHHHCCCCC
T ss_conf 99999986589821068715787578886256788664589617886257651232367776425788750113314454
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q gi|254781004|r 474 -------------------------------------------------------------------------------- 473 (652)
Q Consensus 474 -------------------------------------------------------------------------------- 473 (652)
T Consensus 266 ~tPN~~ti~~~~~~f~~~~~~~~K~ll~ka~~~~~K~~~v~l~vRGD~ielnevK~~n~l~klaPhy~~~~~le~~~~~~ 345 (620)
T TIGR00409 266 DTPNTKTIAELVEFFNLPAEKVVKTLLVKAVDKSGKEPLVALLVRGDDIELNEVKAKNLLNKLAPHYLVAQVLELATGEE 345 (620)
T ss_pred CCCCCHHHHHHHHHHCCCHHHHHCEEEEEEEECCCCEEEEEEEEECCCCCHHHHCCCCCCCHHCCCHHHCCEEECCCCHH
T ss_conf 77441118999998678876831031466651378606888897367013221113466202134101034011147147
Q ss_pred -------------------------------CCCC---C--CCC---CH-------------------------------
Q ss_conf -------------------------------4554---3--211---00-------------------------------
Q gi|254781004|r 474 -------------------------------FYGP---K--FEY---IL------------------------------- 483 (652)
Q Consensus 474 -------------------------------fygp---k--id~---~~------------------------------- 483 (652)
T Consensus 346 ~~~~~~~~~~~~~g~~~~~~sddyiatnkqv~~~~~~~~khvd~iif~~~~~~~f~~~A~~~~~h~~~vn~~~~~~~~~~ 425 (620)
T TIGR00409 346 EIEQKIASKPDLLGPVKINGSDDYIATNKQVFIDIPVLIKHVDQIIFTVALMSDFAAGANADDKHYKNVNWDRDVAIPEV 425 (620)
T ss_pred HHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCEEECCCCCCCCHHHH
T ss_conf 99998864067555656665310233101344203566644646621263526850103454565030263100211322
Q ss_pred --------------HHH------CCCCCCCCCCCHHHHCCCCCCCEEEEECCCEE-EEEEEEECCCHH-HHHHHHHHHHH
Q ss_conf --------------211------03310012110111022346741673179721-379964034103-78999999997
Q gi|254781004|r 484 --------------KDA------IGRDWQCGTIQVDFNLPSRFNAFYVNSHSEKC-HPVMIHRAVFGS-IERFIGIMIEN 541 (652)
Q Consensus 484 --------------~d~------~gr~~~~~tiq~df~~p~~f~l~y~~~dg~~~-~pvmihr~~~Gs-~eR~ia~liE~ 541 (652)
T Consensus 426 ~~D~r~~~eGDrP~Pdg~G~L~~~~gIEVGHIF~LG~kYS~al~A~f~de~Gk~~t~~~M---GCYGIGVSRl~~Ai~Eq 502 (620)
T TIGR00409 426 VADIRKVKEGDRPSPDGKGTLKIAKGIEVGHIFKLGTKYSKALKATFLDENGKEQTFLTM---GCYGIGVSRLVSAIAEQ 502 (620)
T ss_pred HHHHHHEEECCCCCCCCCCEEEECCCCEEEEEECCCHHHHHHHCCEEECCCCCCCCEEEC---CCCCCHHHHHHHHHHHH
T ss_conf 200100024777884387405640562341133022033333065564668850252560---55571389999999985
Q ss_pred H----CCCCCCCCCCEEEEEEECC----HHHHHHHHHHHHHHH-----HCCCEEEEECCCCCCCHHHHH--HHHCCCCEE
Q ss_conf 3----8708873378089998579----668999999999999-----879889997589663676665--543489889
Q gi|254781004|r 542 F----KGNLPLWLSPIQAIVTTIT----SSAVEYAQEIANLLK-----SHHLSIETDFRNETINYKIRE--HSIKKIPII 606 (652)
Q Consensus 542 ~----~g~~P~wLAP~QV~Iipi~----e~~~eya~~i~~~L~-----~~girV~~Ddr~~~~G~Kir~--a~l~giP~~ 606 (652)
T Consensus 503 ~~D~~G~~WP~~~APy~V~Iv~~N~~~se~~~~~A~~~Y~~L~ndPtm~~g~dvllDDR~ER~Gv~f~Dkl~eLIG~P~~ 582 (620)
T TIGR00409 503 HYDERGIIWPKAIAPYDVVIVVMNMKDSEEQKQLAEEVYSELLNDPTMAQGVDVLLDDRNERAGVKFRDKLSELIGIPLR 582 (620)
T ss_pred CCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCEE
T ss_conf 05878636764538814899617898427899999999998502711365335664101023555156677775598719
Q ss_pred EEECHHHHHCCCEEEEECCCCCEEEECHHHHHHHHHH
Q ss_conf 9987425325818999889886633429999999987
Q gi|254781004|r 607 IICGDKEASERSIGIRRFGSTTTQKVSLLDAIPILTK 643 (652)
Q Consensus 607 ivIG~ke~e~~~Vtir~R~~~~~~~i~lee~i~~l~~ 643 (652)
T Consensus 583 v~~G~~~l~~~~~Ev~~R~~gEk~~i~~~~~~~~~~~ 619 (620)
T TIGR00409 583 VVVGKKNLDNGEIEVKKRRNGEKQLIKKDELVEVLEE 619 (620)
T ss_pred EEECCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHC
T ss_conf 9975621677516898615510457778999998622
|
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases . Prolyl-tRNA synthetase (6.1.1.15 from EC) exists in two forms, which are loosely related. The first form, is present in the majority of eubacteria species. The second one, present in some eubacteria, is essentially present in archaea and eukaryota. Prolyl-tRNA synthetase belongs to class IIa. This family includes the enzyme from Escherichia coli that contains all three of the conserved consensus motifs characteristic of class II aminoacyl-tRNA synthetases and the enzyme from the spirochete Borrelia burgdorferi.; GO: 0000166 nucleotide binding, 0004827 proline-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006433 prolyl-tRNA aminoacylation, 0005737 cytoplasm. |
| >PRK08661 prolyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=0 Score=547.08 Aligned_cols=337 Identities=22% Similarity=0.325 Sum_probs=290.9 Q ss_pred CCCEEEEECCHHHHHHHHHHHHHHHHHC-CCEEEECCCCCC-CCCCCCCCCCCCCCCCCCEEECCCCCCCCCCEEEECCC Q ss_conf 8743565010789999999999988768-963855543244-31000112100125554201001456777823774343 Q gi|254781004|r 262 GSGVIFWHRKGWKIFQTLISYMRRKIKD-DYEEINTPQVLD-QHLWQQSGHWDSYRANMFAVKCADDTIKDLRTFALKPM 339 (652) Q Consensus 262 ~~G~~~wlP~G~~i~~~ie~~ir~~~~~-G~~eV~tP~l~~-~~Lw~~SGh~~~y~~~mf~~~~~~~~~~~~~~~~LkPm 339 (652) T Consensus 34 VkG~~v~~P~g~~iw~~i~~~~~~~~~~~g~~~~~fP~liP~~~l~kE~~hvegF~pE~~~VT~-~G~~~l~~~l~lrPT 112 (478) T PRK08661 34 VKGCMVIRPYGYAIWENIQKILDEMFKETGHENVYFPLLIPESLLQKEAEHIEGFAPEVAWVTH-GGGEKLEEPLALRPT 112 (478) T ss_pred CCEEEEECCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHCCCCCEEEEEEC-CCCCCCCCCCCCCCC T ss_conf 8727997874899999999999999986398087302406689998666566156740489954-787555676310888 Q ss_pred CHHHHHHHHHHCCCCHHHCCHHHHHHEEEECCCCCCCCEEEEECCCCCCCCCEEECC-HHHHHHHHHHHHHHHHHHHH-H Q ss_conf 125777765201222231043200010001278764520001056353344210105-37678878999999887665-5 Q gi|254781004|r 340 NCPGHVAVFNHGLKSYRELPVRLAEFGSVYRNEPSGSLHGLMRVRGFTQDDAHVFCT-KEQMFNECLKIHNLIISIYK-D 417 (652) Q Consensus 340 ncp~h~~i~~~~~~SYrdLPlrl~e~~~~~R~E~sg~l~GL~R~ReF~~~Dah~F~~-~eq~~~e~~~~~~~~~~v~~-~ 417 (652) T Consensus 113 sEt~i~~~~~~wI~SyrdLPl~l~Qw~~v~R~E~r~-r~-flR~rEFl~qe~ht~h~t~eea~~~~~~~~~~Y~~~~e~~ 190 (478) T PRK08661 113 SETIIYPMFKKWIQSYRDLPLLYNQWVNVVRWEKKT-RP-FLRTREFLWQEGHTAHATEEEAEEETLEMLEIYKEFAEDY 190 (478) T ss_pred CHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCC-CC-HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH T ss_conf 799999999998523652690002004458657889-63-1434263542120113999999999999999999999983 Q ss_pred HCCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCC- Q ss_conf 2133210001465311258603577899999999985021212566752055555545543211002110331001211- Q gi|254781004|r 418 FGFEKIMVKLSTRPEKRVGSDALWDDAENIMKGVLDTIKNSSQDRINTGVLLGEGAFYGPKFEYILKDAIGRDWQCGTI- 496 (652) Q Consensus 418 ~g~~~~~~~ls~~~~~~~g~~~~~~~ae~~l~~~l~~~~~~~~~~~~~~~~~g~~afygpkid~~~~d~~gr~~~~~ti- 496 (652) T Consensus 191 LaiPvi~g-~k~~~ekFaGa~~------------------------------------T~~iea~m~d--GkaLQ~gtsH 231 (478) T PRK08661 191 LAIPVIIG-KKTEWEKFAGADY------------------------------------TYTIEAMMPD--GKALQIGTSH 231 (478) T ss_pred CCCCEECC-CCCCCCCCCCCCC------------------------------------CCEEEEECCC--CCEEECCCEE T ss_conf 78755637-7783021789865------------------------------------4205887268--8631143142 Q ss_pred CHHHHCCCCCCCEEEEECCCEEEEEEEEECCCHHHHHHHHHHHHHHC----CCCCCCCCCEEEEEEECC-----HHHHHH Q ss_conf 01110223467416731797213799640341037899999999738----708873378089998579-----668999 Q gi|254781004|r 497 QVDFNLPSRFNAFYVNSHSEKCHPVMIHRAVFGSIERFIGIMIENFK----GNLPLWLSPIQAIVTTIT-----SSAVEY 567 (652) Q Consensus 497 q~df~~p~~f~l~y~~~dg~~~~pvmihr~~~Gs~eR~ia~liE~~~----g~~P~wLAP~QV~Iipi~-----e~~~ey 567 (652) T Consensus 232 ~LGq~fskaf~i~f~d~~g~~~~~~~---ts~GistR~iga~Im~H~Dd~GlvlPp~iAP~qVvIvPi~~~~~~~~v~~~ 308 (478) T PRK08661 232 YLGQNFAKAFDIKFQDKDGKLEYVHQ---TSWGVSTRLIGALIMVHGDDKGLVLPPKIAPIQVVIIPILKKKEEEEVLEY 308 (478) T ss_pred CCCHHHHHHCCCEEECCCCCEEEEEE---ECCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCEEEEEECCCCCHHHHHHH T ss_conf 16223567549699889998867887---534542789999999847998651784559830899984578878999999 Q ss_pred HHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHCCCCEEEEECHHHHHCCCEEEEECCCCCEEEECHHHHHHHHHH Q ss_conf 9999999998798899975896636766655434898899987425325818999889886633429999999987 Q gi|254781004|r 568 AQEIANLLKSHHLSIETDFRNETINYKIREHSIKKIPIIIICGDKEASERSIGIRRFGSTTTQKVSLLDAIPILTK 643 (652) Q Consensus 568 a~~i~~~L~~~girV~~Ddr~~~~G~Kir~a~l~giP~~ivIG~ke~e~~~Vtir~R~~~~~~~i~lee~i~~l~~ 643 (652) T Consensus 309 ~~~i~~~L~~~girv~~Ddrd~~pG~Kf~~~elkGvPlRieiGprDle~~~v~v~RRDt~eK~~v~~~~l~~~v~~ 384 (478) T PRK08661 309 AKELAEELKAAGIRVKLDDRDKTPGWKFYEWELKGVPLRIEIGPRDLENNTVVLVRRDTLEKETVSLDELVEEVPE 384 (478) T ss_pred HHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCHHCCCEEEEEECCCCCCEEECHHHHHHHHHH T ss_conf 9999999987790799817665665666661014785899977201028979999867986146659999999999 |
|
| >COG0442 ProS Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=0 Score=519.92 Aligned_cols=376 Identities=18% Similarity=0.289 Sum_probs=299.5 Q ss_pred EECCCCCCEEEEECCHHHHHHHHHHHHHHHHHC-CCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCEEE Q ss_conf 422678743565010789999999999988768-9638555432443100011210012555420100145677782377 Q gi|254781004|r 257 HIAEDGSGVIFWHRKGWKIFQTLISYMRRKIKD-DYEEINTPQVLDQHLWQQSGHWDSYRANMFAVKCADDTIKDLRTFA 335 (652) Q Consensus 257 ~~~~~~~G~~~wlP~G~~i~~~ie~~ir~~~~~-G~~eV~tP~l~~~~Lw~~SGh~~~y~~~mf~~~~~~~~~~~~~~~~ 335 (652) T Consensus 31 ~i~~~~~G~y~~lP~g~rv~~kI~~iir~em~~~G~~Evl~P~L~p~eLwkEs~r~~~f~~El~~v-----~drg~~~l~ 105 (500) T COG0442 31 MIRKPVKGLYVWLPLGLRVLEKIENIIREEMDKIGAQEVLFPTLIPAELWKESGRWEGFGPELFRV-----KDRGDRPLA 105 (500) T ss_pred CEEECCCCEEEECCCHHHHHHHHHHHHHHHHHHCCCEEEECHHCCHHHHHHHHCHHHCCCHHHEEE-----ECCCCCEEE T ss_conf 602025716997765899999999999999986085088311058789998748563036444899-----716996343 Q ss_pred ECCCCHHHHHHHHHHCCCCHHHCCHHHHHHEEEECCCCCCCCEEEEECCCCCCCCCEEECC-HHHHHHHHHHHHHHHHHH Q ss_conf 4343125777765201222231043200010001278764520001056353344210105-376788789999998876 Q gi|254781004|r 336 LKPMNCPGHVAVFNHGLKSYRELPVRLAEFGSVYRNEPSGSLHGLMRVRGFTQDDAHVFCT-KEQMFNECLKIHNLIISI 414 (652) Q Consensus 336 LkPmncp~h~~i~~~~~~SYrdLPlrl~e~~~~~R~E~sg~l~GL~R~ReF~~~Dah~F~~-~eq~~~e~~~~~~~~~~v 414 (652) T Consensus 106 L~PTsEe~it~~~~~~i~SYkdLPl~lYQi~~kfRdE~rp-r~gllR~REF~mkdaySfh~~~e~a~~~y~~~~~~Y~~i 184 (500) T COG0442 106 LRPTSEEVITDMFRKWIRSYKDLPLKLYQIQSKFRDEKRP-RFGLLRGREFLMKDAYSFHADEEDAEETYEKMLDAYSRI 184 (500) T ss_pred ECCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCC-CCCCCCHHEEEECCCCCCCCCHHHHHHHHHHHHHHHHHH T ss_conf 5788689999999998655651881210134588433468-877300020330111210289899999999999999999 Q ss_pred HHHHCCCCCEECCCCCCCCCCCCHHHHHHH-HH-------------HHHHHH-HHHCCCCC-CCCCCCC----------- Q ss_conf 655213321000146531125860357789-99-------------999999-85021212-5667520----------- Q gi|254781004|r 415 YKDFGFEKIMVKLSTRPEKRVGSDALWDDA-EN-------------IMKGVL-DTIKNSSQ-DRINTGV----------- 467 (652) Q Consensus 415 ~~~~g~~~~~~~ls~~~~~~~g~~~~~~~a-e~-------------~l~~~l-~~~~~~~~-~~~~~~~----------- 467 (652) T Consensus 185 f~~i~l~~~~~~ad~g~~Gg~~S~eF~~l~pd~ge~qi~ts~~y~aN~e~a~~~~~~~~~~~~~~~~v~t~s~~~s~r~~ 264 (500) T COG0442 185 FLRLPLIFGPVPADEGFIGGSYSHEFEALMPDGGEDQIATSHHYGANFEKAFIDIKFEDEEEGELEYVHTTSYGISTRII 264 (500) T ss_pred HHHCCCEEEEECCCCCCCCCCCCEEEEEECCCCCCCEEEEECCHHHHHHHHCCCCCCCCCCCCCCEEECCCCEEEEEEEE T ss_conf 98589538862566778887653699998568985479980626666877446777556665541475146268874001 Q ss_pred -----CCCC-CCCCCCCC---------------------------CCC-----------HH----HHCCC-------CCC Q ss_conf -----5555-55455432---------------------------110-----------02----11033-------100 Q gi|254781004|r 468 -----LLGE-GAFYGPKF---------------------------EYI-----------LK----DAIGR-------DWQ 492 (652) Q Consensus 468 -----~~g~-~afygpki---------------------------d~~-----------~~----d~~gr-------~~~ 492 (652) T Consensus 265 ~~~i~i~GDn~G~v~Pp~vA~~qV~~~~~~~~ga~~h~~~~~~~rd~~~~l~~~~~~~~~D~~~~~~~G~kl~~~e~ieV 344 (500) T COG0442 265 GAAILIHGDNEGLVLPPIVADIQVVIVPIFIKGANEHYKVVNYGRDVAEPLEKLGIRVEGDDRSPDGPGFKLNIWEGIEV 344 (500) T ss_pred EEEEEEECCCCCCCCCCHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCCCCEEEEEECCCC T ss_conf 58999714887764875004534899751336741013343045444566543025884245689999721102102445 Q ss_pred CCCCCHHHHCCCCCCCEEEEECCCEEEEEEEEECCCHH-HHHHHHHHHHHH----CCCCCCCCCCEEEEEEECCH---HH Q ss_conf 12110111022346741673179721379964034103-789999999973----87088733780899985796---68 Q gi|254781004|r 493 CGTIQVDFNLPSRFNAFYVNSHSEKCHPVMIHRAVFGS-IERFIGIMIENF----KGNLPLWLSPIQAIVTTITS---SA 564 (652) Q Consensus 493 ~~tiq~df~~p~~f~l~y~~~dg~~~~pvmihr~~~Gs-~eR~ia~liE~~----~g~~P~wLAP~QV~Iipi~e---~~ 564 (652) T Consensus 345 ghif~lG~kyse~~~a~v~~r~g~~~~~~m---g~ygigvsr~v~a~ieq~~d~~gi~w~~a~apf~~~iv~~n~~~~~~ 421 (500) T COG0442 345 GHIFELGTKYSEAMNATVLDRDGKEQPKTM---GCYGIGVSRLVAALLEQIHDENGIIWPKAIAPFDVHIVPVNTKDFKQ 421 (500) T ss_pred CEEEEECCHHHHHCEEEEEECCCCCCCEEE---ECHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCHHHHH T ss_conf 779998741254180499924887144178---70000034599999997362226716001475000799748635999 Q ss_pred HHHHHHHHHHHHHCC-CEEEEECCCCCCCHHHHHHHHCCCCEEEEECHHHHHCCCEEEEECCCCCEEEECHHHHHHHHH Q ss_conf 999999999999879-889997589663676665543489889998742532581899988988663342999999998 Q gi|254781004|r 565 VEYAQEIANLLKSHH-LSIETDFRNETINYKIREHSIKKIPIIIICGDKEASERSIGIRRFGSTTTQKVSLLDAIPILT 642 (652) Q Consensus 565 ~eya~~i~~~L~~~g-irV~~Ddr~~~~G~Kir~a~l~giP~~ivIG~ke~e~~~Vtir~R~~~~~~~i~lee~i~~l~ 642 (652) T Consensus 422 ~~~~~~~~~~l~~~G~~e~~~ddr~er~g~k~~~a~liGiP~~~~~g~~-~~~g~~e~k~r~~ge~~~~~~~~l~~~~~ 499 (500) T COG0442 422 AEAAEKLYVELPWCGTVEVLLDDRDERPGVKFADADLIGIPLRIVVGKR-LAEGEVEVKCRKCGEKEAVTIEALFARLY 499 (500) T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCEEECCCCEEEECCC-CCCCCEEEEECCCCCHHHCCHHHHHHHHH T ss_conf 9875658998775786214454220146750148747104403310334-46882368864778610154998888860 |
|
| >TIGR00408 proS_fam_I prolyl-tRNA synthetase; InterPro: IPR004499 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=100.00 E-value=0 Score=468.41 Aligned_cols=359 Identities=22% Similarity=0.358 Sum_probs=310.4 Q ss_pred HHHHHHHHHHHHHHHHHHHCCEEEECCCCCCEEEEECCHHHHHHHHHHHHHHHHHC--------------------CCEE Q ss_conf 99999975320088754114404422678743565010789999999999988768--------------------9638 Q gi|254781004|r 234 YLYFLEESEKRDHRKLAREMDLFHIAEDGSGVIFWHRKGWKIFQTLISYMRRKIKD--------------------DYEE 293 (652) Q Consensus 234 ~~~~~eea~~rdHr~lg~~~~lf~~~~~~~G~~~wlP~G~~i~~~ie~~ir~~~~~--------------------G~~e 293 (652) T Consensus 12 Y~~il~kAel~d~R------------ypVKG~~v~~P~g~~iw~~iq~~~~~~~~~~~~~~~~~L~~F~P~~~~~Y~h~~ 79 (533) T TIGR00408 12 YDQILQKAELIDYR------------YPVKGCYVFLPYGFKIWENIQKILRDKLDEIKLKDKVILKKFIPIESLPYGHEE 79 (533) T ss_pred HHHHHHCCEEEEEC------------CCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHH T ss_conf 89987305576641------------760103784598778999999999999987643546766405677777777001 Q ss_pred EECCCCCCCCCCCC-CCCCCCCCCCCCEEECCCCCCCCCCEEEECCCCHHHHHHHHHHCCCCHHHCCHHHHHHEEEECCC Q ss_conf 55543244310001-12100125554201001456777823774343125777765201222231043200010001278 Q gi|254781004|r 294 INTPQVLDQHLWQQ-SGHWDSYRANMFAVKCADDTIKDLRTFALKPMNCPGHVAVFNHGLKSYRELPVRLAEFGSVYRNE 372 (652) Q Consensus 294 V~tP~l~~~~Lw~~-SGh~~~y~~~mf~~~~~~~~~~~~~~~~LkPmncp~h~~i~~~~~~SYrdLPlrl~e~~~~~R~E 372 (652) T Consensus 80 v~fP~L~p~~~L~KEk~HikGF~pEv~wi~~-~G~~~L~~pLaLRPTSEt~~y~m~~kWv~sy~DLPlk~nQw~~vfR~E 158 (533) T TIGR00408 80 VYFPMLIPESELEKEKDHIKGFEPEVYWITH-GGLKKLDEPLALRPTSETAMYNMYKKWVKSYRDLPLKINQWVNVFRYE 158 (533) T ss_pred EECCCCCCHHHHHHHCCCCCCCCCHHHHEEC-CCCCCCCCCCEECCCCHHHHHHHHHHHHHHCCCCCEEEEEEEEEEECC T ss_conf 0056445255786321356885840021010-377724675012586178887657878512158876898435889802 Q ss_pred CCCCCEEEEECCCCC-CCCCEE-ECCHHHHHHHHHHHHHHHHHHHH-HHCCCCCEECCCCCCCCCCCCHHHHHHHHHHHH Q ss_conf 764520001056353-344210-10537678878999999887665-521332100014653112586035778999999 Q gi|254781004|r 373 PSGSLHGLMRVRGFT-QDDAHV-FCTKEQMFNECLKIHNLIISIYK-DFGFEKIMVKLSTRPEKRVGSDALWDDAENIMK 449 (652) Q Consensus 373 ~sg~l~GL~R~ReF~-~~Dah~-F~~~eq~~~e~~~~~~~~~~v~~-~~g~~~~~~~ls~~~~~~~g~~~~~~~ae~~l~ 449 (652) T Consensus 159 ~kHT-RPflR~rEf~twqE~HT~H~t~~eAee~v~~~~~~Yk~f~~~~LaIP~~~-g~k~E~eKFaGA~~T~-------- 228 (533) T TIGR00408 159 KKHT-RPFLRTREFLTWQEAHTAHATAEEAEEEVLKALDLYKEFIENLLAIPYFV-GRKSEKEKFAGAEYTW-------- 228 (533) T ss_pred CCCC-CCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEE-ECCCCCCCCCCCCCCE-------- T ss_conf 1787-86102333210100013143777889999999998899975028864687-1488755478876223-------- Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCC-HHHHCCCCCCCEEEEECCCEEEEEEEEECCC Q ss_conf 999850212125667520555555455432110021103310012110-1110223467416731797213799640341 Q gi|254781004|r 450 GVLDTIKNSSQDRINTGVLLGEGAFYGPKFEYILKDAIGRDWQCGTIQ-VDFNLPSRFNAFYVNSHSEKCHPVMIHRAVF 528 (652) Q Consensus 450 ~~l~~~~~~~~~~~~~~~~~g~~afygpkid~~~~d~~gr~~~~~tiq-~df~~p~~f~l~y~~~dg~~~~pvmihr~~~ 528 (652) T Consensus 229 ----------------------------~~e~imP-DgG~~LQ~ATsH~LGqnF~K~F~i~fe~p~Gs~~~~~~ayq~s~ 279 (533) T TIGR00408 229 ----------------------------TFETIMP-DGGRTLQIATSHDLGQNFAKTFDIKFENPTGSDMDKVYAYQTSY 279 (533) T ss_pred ----------------------------EEEEECC-CCCEEHHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCCCEECCC T ss_conf ----------------------------5675247-76500122121133035402036788778889764101001013 Q ss_pred HHHHHHHHHHHHHH----CCCCCCCCCCEEEEEEE-C----C-----HHHHHHHHHHHHHHHHCCCEEEEECCCC-CCCH Q ss_conf 03789999999973----87088733780899985-7----9-----6689999999999998798899975896-6367 Q gi|254781004|r 529 GSIERFIGIMIENF----KGNLPLWLSPIQAIVTT-I----T-----SSAVEYAQEIANLLKSHHLSIETDFRNE-TINY 593 (652) Q Consensus 529 Gs~eR~ia~liE~~----~g~~P~wLAP~QV~Iip-i----~-----e~~~eya~~i~~~L~~~girV~~Ddr~~-~~G~ 593 (652) T Consensus 280 G~StR~igali~~HsD~~GLVLPp~vAp~Qvv~~Pv~IFkK~s~E~~~~~~e~a~~v~~~Lk~~~iRv~~D~~~~~~pG~ 359 (533) T TIGR00408 280 GISTRVIGALILIHSDEKGLVLPPRVAPIQVVIIPVIIFKKKSDEENKKVMELARKVEDKLKKLGIRVHLDKRDNYRPGK 359 (533) T ss_pred CHHHHHHHHEEEEECCCCCCCCCCCCCCEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCC T ss_conf 35788754500012267775167012733589998677558752147789999999998773041007970355753231 Q ss_pred HHHHHHHCCCCEEEEECHHHHHCCCEEEEECCCCC--EEEECHHHHHHH-HHHH Q ss_conf 66655434898899987425325818999889886--633429999999-9873 Q gi|254781004|r 594 KIREHSIKKIPIIIICGDKEASERSIGIRRFGSTT--TQKVSLLDAIPI-LTKE 644 (652) Q Consensus 594 Kir~a~l~giP~~ivIG~ke~e~~~Vtir~R~~~~--~~~i~lee~i~~-l~~e 644 (652) T Consensus 360 kf~~~E~kGiPlR~evGP~D~~~n~~~~~rR~~~~kfK~~~~~~~L~~~k~~~~ 413 (533) T TIGR00408 360 KFSKWELKGIPLRLEVGPNDIEKNIVVVSRRDTKRKFKYQVSLDELEERKVVEL 413 (533) T ss_pred HHHCCCEEECCEEEEECCCCCCCCEEEEEEECCCCEEEEEEEHHHHHHHHHHHH T ss_conf 320453330426998777510437689999617713557720545446789999 |
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases . Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by IPR002314 from INTERPRO, which recognises tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent families. This family includes the archaeal enzyme, the Pro-specific domain of a human multifunctional tRNA ligase, and the enzyme from the spirochete Borrelia burgdorferi (Lyme desease spirochete). The other family, IPR004500 from INTERPRO, includes enzymes from Escherichia coli, Bacillus subtilis, Synechocystis sp. (strain PCC6803), and one of the two prolyl-tRNA synthetases of Saccharomyces cerevisiae (Baker's yeast).; GO: 0000166 nucleotide binding, 0004827 proline-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006433 prolyl-tRNA aminoacylation, 0005737 cytoplasm. |
| >KOG2324 consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=0 Score=466.60 Aligned_cols=379 Identities=18% Similarity=0.241 Sum_probs=312.2 Q ss_pred CEEEECCCCCCEEEEECCHHHHHHHHHHHHHHHHHC-CCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC Q ss_conf 404422678743565010789999999999988768-9638555432443100011210012555420100145677782 Q gi|254781004|r 254 DLFHIAEDGSGVIFWHRKGWKIFQTLISYMRRKIKD-DYEEINTPQVLDQHLWQQSGHWDSYRANMFAVKCADDTIKDLR 332 (652) Q Consensus 254 ~lf~~~~~~~G~~~wlP~G~~i~~~ie~~ir~~~~~-G~~eV~tP~l~~~~Lw~~SGh~~~y~~~mf~~~~~~~~~~~~~ 332 (652) T Consensus 33 e~GfI~ps~~G~yq~LPlg~R~~~K~~~~l~~~mqs~Ga~kIslp~ls~~~LWekTgRw~~~gsEl~r-----l~Dr~gk 107 (457) T KOG2324 33 EVGFIRPSSPGLYQLLPLGLRVLNKLCRLLDNEMQSGGAQKISLPILSSKELWEKTGRWDAMGSELFR-----LHDRKGK 107 (457) T ss_pred HHCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHCCCCCCCCHHHEE-----EECCCCC T ss_conf 70710148987012130037999999999999987236705740446868998761851124604537-----5104787 Q ss_pred EEEECCCCHHHHHHHHHHCCC-CHHHCCHHHHHHEEEECCCCCCCCEEEEECCCCCCCCCEEECC-HHHHHHHHHHHHHH Q ss_conf 377434312577776520122-2231043200010001278764520001056353344210105-37678878999999 Q gi|254781004|r 333 TFALKPMNCPGHVAVFNHGLK-SYRELPVRLAEFGSVYRNEPSGSLHGLMRVRGFTQDDAHVFCT-KEQMFNECLKIHNL 410 (652) Q Consensus 333 ~~~LkPmncp~h~~i~~~~~~-SYrdLPlrl~e~~~~~R~E~sg~l~GL~R~ReF~~~Dah~F~~-~eq~~~e~~~~~~~ 410 (652) T Consensus 108 q~cL~pThEE~iT~lmat~~~lsykqlPi~vYQigrKfRDElrp-RfGLlRgREFlMKDmYsFd~~~etA~qTy~~v~~a 186 (457) T KOG2324 108 QMCLTPTHEEDITALMATYIPLSYKQLPIRVYQIGRKFRDELRP-RFGLLRGREFLMKDMYSFDSDEETAQQTYQLVDQA 186 (457) T ss_pred EECCCCCHHHHHHHHHHHCCCCCCCCCCEEEEEECHHHHHCCCC-CCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH T ss_conf 73057754899999998627432202867766505454413475-42301247888765330258888999999999999 Q ss_pred HHHHHHHHCCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCC Q ss_conf 88766552133210001465311258603577899999999985021212566752055555545543211002110331 Q gi|254781004|r 411 IISIYKDFGFEKIMVKLSTRPEKRVGSDALWDDAENIMKGVLDTIKNSSQDRINTGVLLGEGAFYGPKFEYILKDAIGRD 490 (652) Q Consensus 411 ~~~v~~~~g~~~~~~~ls~~~~~~~g~~~~~~~ae~~l~~~l~~~~~~~~~~~~~~~~~g~~afygpkid~~~~d~~gr~ 490 (652) T Consensus 187 Y~~iFkqL~~pfVkv~AdsG~iGG~vShEfhl~~~vgED~l~~C~~C~~s~n~e~~~~sk~-~~-Cp~C~~~~L~~~~~I 264 (457) T KOG2324 187 YDRIFKQLGLPFVKVWADSGDIGGEVSHEFHLIHPVGEDTLMSCPSCGYSKNSEDLDLSKI-AS-CPKCNEGRLTKTKSI 264 (457) T ss_pred HHHHHHHCCCCEEEEEECCCCCCCEEEEEEECCCCCCCCCEEECCCCCCCCCHHHHCCCCC-CC-CCCCCCCCCCCCCCE T ss_conf 9999997399769986035664761012575257667500344676775576012137765-66-876567775112434 Q ss_pred CCCCCCCHHHHCCCCCCCEEEEECCCEEEEEEEEECCCHH-HHHHHHHHHHH----HCCCCCCCCCCEEEEEEEC-CHHH Q ss_conf 0012110111022346741673179721379964034103-78999999997----3870887337808999857-9668 Q gi|254781004|r 491 WQCGTIQVDFNLPSRFNAFYVNSHSEKCHPVMIHRAVFGS-IERFIGIMIEN----FKGNLPLWLSPIQAIVTTI-TSSA 564 (652) Q Consensus 491 ~~~~tiq~df~~p~~f~l~y~~~dg~~~~pvmihr~~~Gs-~eR~ia~liE~----~~g~~P~wLAP~QV~Iipi-~e~~ 564 (652) T Consensus 265 EVgHtF~LG~kYS~~lna~f~~~~gKpe~---l~MgCyGIGVtRllaAa~evls~~~~lrwP~~iAPy~vcli~pk~~~~ 341 (457) T KOG2324 265 EVGHTFLLGTKYSKPLNAKFVNVEGKPEF---LHMGCYGIGVTRLLAAAAEVLSDDKGLRWPSLIAPYKVCLIGPKKGSK 341 (457) T ss_pred EEEEEEEECCCCCCCCCCEEEEECCCCCE---EEECCEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCH T ss_conf 77778871430154347655440598406---874020004898999999981565543150002751347853688402 Q ss_pred HHHHHHHHHHHHHCC------CEEEEECCCC-CCCHHHHHHHHCCCCEEEEEC-HHHHHCCCEEEEECCCCCEEEECHHH Q ss_conf 999999999999879------8899975896-636766655434898899987-42532581899988988663342999 Q gi|254781004|r 565 VEYAQEIANLLKSHH------LSIETDFRNE-TINYKIREHSIKKIPIIIICG-DKEASERSIGIRRFGSTTTQKVSLLD 636 (652) Q Consensus 565 ~eya~~i~~~L~~~g------irV~~Ddr~~-~~G~Kir~a~l~giP~~ivIG-~ke~e~~~Vtir~R~~~~~~~i~lee 636 (652) T Consensus 342 ~q~~~ev~~el~~~~~~~~l~~~iLlddr~~ltiG~Ri~dA~~lG~PfviVvg~s~~~~~~~~EV~~~~~ge~~~l~~~~ 421 (457) T KOG2324 342 SQRAQEVISELLNDEAVGNLHGEILLDDREELTIGKRIKDANRLGIPFVIVVGNSASWDNPEIEVRTIRWGESAELDKDG 421 (457) T ss_pred HHHHHHHHHHHHCCHHHHHHCCCEECCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCEEEEEEEECCCEECCCHHH T ss_conf 31399999876043234443245001306663267766567754998799970334678965899982047320252566 Q ss_pred HHHHHHH Q ss_conf 9999987 Q gi|254781004|r 637 AIPILTK 643 (652) Q Consensus 637 ~i~~l~~ 643 (652) T Consensus 422 ~~~l~~~ 428 (457) T KOG2324 422 FMKLLSE 428 (457) T ss_pred HHHHHHH T ss_conf 8887432 |
|
| >PRK04173 glycyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=0 Score=368.59 Aligned_cols=346 Identities=19% Similarity=0.278 Sum_probs=272.1 Q ss_pred CCCEEEEECCHHHHHHHHHHHHHHHH--HC-CCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEECC-------------- Q ss_conf 87435650107899999999999887--68-96385554324431000112100125554201001-------------- Q gi|254781004|r 262 GSGVIFWHRKGWKIFQTLISYMRRKI--KD-DYEEINTPQVLDQHLWQQSGHWDSYRANMFAVKCA-------------- 324 (652) Q Consensus 262 ~~G~~~wlP~G~~i~~~ie~~ir~~~--~~-G~~eV~tP~l~~~~Lw~~SGh~~~y~~~mf~~~~~-------------- 324 (652) T Consensus 29 ~ag~~DyGPlG~~LK~Ni~~~W~~~fv~~~~~~~~id~~ii~~~~V~~ASGHv~~F~D~~v~c~~~~~r~RaD~Lie~~~ 108 (460) T PRK04173 29 LAGFWDYGPLGVELKNNIKKAWWKSFVQERPDVVGIDSPIIMPPEVWKASGHVDNFSDPLVECKKCKKRYRADHLIEEYL 108 (460) T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHCCCCCCCCCCCEEECCCCCCEECHHHHHHHHH T ss_conf 12361558535999999999999998652587788614444898785446774656762347576783630167766653 Q ss_pred ---------------------------------------------CCCCCCCCEEEECCCCHHHHHHHHHHCCCCHHH-C Q ss_conf ---------------------------------------------456777823774343125777765201222231-0 Q gi|254781004|r 325 ---------------------------------------------DDTIKDLRTFALKPMNCPGHVAVFNHGLKSYRE-L 358 (652) Q Consensus 325 ---------------------------------------------~~~~~~~~~~~LkPmncp~h~~i~~~~~~SYrd-L 358 (652) T Consensus 109 ~~~~~~~~~~~l~~~i~~~~i~cP~cg~~~lt~~~~FNLMF~T~iG~~~~~~~~~YLRPETAQGiFvnFk~v~~~~r~Kl 188 (460) T PRK04173 109 GIDAEGLSNEELEELIEENNIKCPECGGENWTEVRQFNLMFKTFIGPVEDSSSLGYLRPETAQGIFVNFKNVLRTARKKL 188 (460) T ss_pred HHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCEEECHHHHHHHHHHHHHHHHHCCCCC T ss_conf 20123358999999999708879999996775443120555751355667775023160441045661199999717788 Q ss_pred CHHHHHHEEEECCCCCCCCEEEEECCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCH Q ss_conf 43200010001278764520001056353344210105376788789999998876655213321000146531125860 Q gi|254781004|r 359 PVRLAEFGSVYRNEPSGSLHGLMRVRGFTQDDAHVFCTKEQMFNECLKIHNLIISIYKDFGFEKIMVKLSTRPEKRVGSD 438 (652) Q Consensus 359 Plrl~e~~~~~R~E~sg~l~GL~R~ReF~~~Dah~F~~~eq~~~e~~~~~~~~~~v~~~~g~~~~~~~ls~~~~~~~g~~ 438 (652) T Consensus 189 PFgiaQIGKaFRNEIsP-r~~lfR~REFeQmEiE~F~~P~~~~e~~~yw~~~~~~fl~~lGi~~~~lR~r~h~~~----- 262 (460) T PRK04173 189 PFGIAQIGKSFRNEITP-RNFIFRTREFEQMELEFFVKPGTDEEWFAYWIALRKNFLLDLGIDPENLRFREHLPE----- 262 (460) T ss_pred CEEEEECCCCCCCCCCC-CCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHEEEEECCCH----- T ss_conf 80431004001243065-545122345555243310586745899999999999999983998899478630613----- Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC----CCCCCHHHHCCCCCCCCCCCHHHHCCCCCCCEEEEE- Q ss_conf 357789999999998502121256675205555554554----321100211033100121101110223467416731- Q gi|254781004|r 439 ALWDDAENIMKGVLDTIKNSSQDRINTGVLLGEGAFYGP----KFEYILKDAIGRDWQCGTIQVDFNLPSRFNAFYVNS- 513 (652) Q Consensus 439 ~~~~~ae~~l~~~l~~~~~~~~~~~~~~~~~g~~afygp----kid~~~~d~~gr~~~~~tiq~df~~p~~f~l~y~~~- 513 (652) T Consensus 263 elAHYa~-------------~~~D~E~~~~~Gw~E~~Gia~RtdyDL~~H~~---------------~-Sg~~L~~~d~~ 313 (460) T PRK04173 263 ELAHYSK-------------ATWDIEYKFPFGWGELEGIANRTDYDLSRHSK---------------H-SGEDLSYFDQE 313 (460) T ss_pred HHCCCCH-------------HHEEEEEECCCCEEEEEEECCCCHHHHHHHHH---------------H-CCCCEEEEECC T ss_conf 4200022-------------00558994589828876640642102788987---------------4-48871798225 Q ss_pred CCCEEEEEEEEECCCHHHHHHHHHHHHH-H------C------CCCCCCCCCEEEEEEEC--CHHHHHHHHHHHHHHHHC Q ss_conf 7972137996403410378999999997-3------8------70887337808999857--966899999999999987 Q gi|254781004|r 514 HSEKCHPVMIHRAVFGSIERFIGIMIEN-F------K------GNLPLWLSPIQAIVTTI--TSSAVEYAQEIANLLKSH 578 (652) Q Consensus 514 dg~~~~pvmihr~~~Gs~eR~ia~liE~-~------~------g~~P~wLAP~QV~Iipi--~e~~~eya~~i~~~L~~~ 578 (652) T Consensus 314 ~~~k~iPhVIE-pS~G-vdR~~la~L~~ay~ee~~~~~e~R~vL~l~p~lAPikvaVlPL~kk~~l~~~a~~i~~~L~~~ 391 (460) T PRK04173 314 TGEKYIPYVIE-PSFG-LDRLFLAFLEDAYTEEELGDGDKRTVLRLPPALAPVKVAVLPLVKKDKLSEKAREIYAELRKD 391 (460) T ss_pred CCCEECCEEEE-ECCC-CCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHC T ss_conf 58561340564-0467-108999999876520004787505899626645771699996556612589999999999877 Q ss_pred CCEEEEECCCCCCCHHHHHHHHCCCCEEEEECHHHHHCCCEEEEECCCCCEEEECHHHHHHHHHHHC Q ss_conf 9889997589663676665543489889998742532581899988988663342999999998731 Q gi|254781004|r 579 HLSIETDFRNETINYKIREHSIKKIPIIIICGDKEASERSIGIRRFGSTTTQKVSLLDAIPILTKES 645 (652) Q Consensus 579 girV~~Ddr~~~~G~Kir~a~l~giP~~ivIG~ke~e~~~Vtir~R~~~~~~~i~lee~i~~l~~e~ 645 (652) T Consensus 392 ~~~~~~D~sg-sIGkRY~R~DeiGtPf~ITiD~~tled~tVTiR~RDt~~Q~Rv~i~~l~~~l~~~~ 457 (460) T PRK04173 392 GFNVDYDDSG-SIGKRYRRQDEIGTPFCVTVDFDTLEDNTVTIRDRDTMEQVRVKIDELEDYLAEKL 457 (460) T ss_pred CCEEEEECCC-CHHHHHHHCCCCCCCEEEEECCCCCCCCCEEEEECCCCCEEEEEHHHHHHHHHHHH T ss_conf 9759996899-85454453102689879997688676894897835875348989999999999986 |
|
| >PRK00037 hisS histidyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=0 Score=353.01 Aligned_cols=357 Identities=17% Similarity=0.253 Sum_probs=250.8 Q ss_pred CCCEEEEECCHHHHHHHHHHHHHHHHH-CCCEEEECCCCCCCCCCCCC--CCCCCCCCCCCEEECCCCCCCCCCEEEECC Q ss_conf 874356501078999999999998876-89638555432443100011--210012555420100145677782377434 Q gi|254781004|r 262 GSGVIFWHRKGWKIFQTLISYMRRKIK-DDYEEINTPQVLDQHLWQQS--GHWDSYRANMFAVKCADDTIKDLRTFALKP 338 (652) Q Consensus 262 ~~G~~~wlP~G~~i~~~ie~~ir~~~~-~G~~eV~tP~l~~~~Lw~~S--Gh~~~y~~~mf~~~~~~~~~~~~~~~~LkP 338 (652) T Consensus 7 p~G~rD~lP~~~~~~~~i~~~i~~~~~~~Gy~~I~tP~lE~~d~~~~~~g~~~d~~~k~~y~f~-----D~~g~~l~LRp 81 (417) T PRK00037 7 PRGTRDILPEESAKWQYVEDTIREVFERYGFSEIRTPIFEYTELFKRKIGESTDIVEKEMYTFQ-----DKGGRSLTLRP 81 (417) T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHCCCCCCCCCHHHHHEEEEE-----CCCCCEEEECC T ss_conf 9987767988999999999999999998599585775215098862457763220133205677-----59998898567 Q ss_pred CCHHHHHH-HHHHCCCCHHHCCHHHHHHEEEECCCCCCCCEEEEECCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHH Q ss_conf 31257777-65201222231043200010001278764520001056353344210105376788789999998876655 Q gi|254781004|r 339 MNCPGHVA-VFNHGLKSYRELPVRLAEFGSVYRNEPSGSLHGLMRVRGFTQDDAHVFCTKEQMFNECLKIHNLIISIYKD 417 (652) Q Consensus 339 mncp~h~~-i~~~~~~SYrdLPlrl~e~~~~~R~E~sg~l~GL~R~ReF~~~Dah~F~~~eq~~~e~~~~~~~~~~v~~~ 417 (652) T Consensus 82 D~T~~iaR~~~~~~~~~~~~~P~r~~y~g~vfR~e~p~--~G--R~REf~Q~g~eiiG~~~~~aD--aEvi~l~~~~l~~ 155 (417) T PRK00037 82 EGTAPVVRAVIENKLYNELPKPFKLYYIGPMFRYERPQ--KG--RYRQFHQFGVEVIGSDSPAAD--AEVIALAADLLKA 155 (417) T ss_pred CCCHHHHHHHHHHHHHCCCCCCEEEEEECCEEECCCCC--CC--CCCCEEECCHHHHCCCCHHHH--HHHHHHHHHHHHH T ss_conf 76729999999721010688765899872466047898--87--635245635277466417888--9999999999998 Q ss_pred HCCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC----CCC-------CCCCCCCCCC--CCCC-CCCH Q ss_conf 213321000146531125860357789999999998502121256----675-------2055555545--5432-1100 Q gi|254781004|r 418 FGFEKIMVKLSTRPEKRVGSDALWDDAENIMKGVLDTIKNSSQDR----INT-------GVLLGEGAFY--GPKF-EYIL 483 (652) Q Consensus 418 ~g~~~~~~~ls~~~~~~~g~~~~~~~ae~~l~~~l~~~~~~~~~~----~~~-------~~~~g~~afy--gpki-d~~~ 483 (652) T Consensus 156 lGl~~~~i~i~~-----~g~~~~~~~~r~~L~~~l~~~~~~l~~~~~~~~~~~~l~~ld~~~~~~~~~~~~a~~l~~~l~ 230 (417) T PRK00037 156 LGLKGLVLLLNS-----LGDFEIRANYRKALVGYLEKHLDELDEDSKRRLETNPLRILDKKDKEDQEILADAPKLLDYLD 230 (417) T ss_pred CCCCCCCCCCCC-----CCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHCHHHHHHHC T ss_conf 399652001056-----776888999999999999997643387887766542778764238879999973625453327 Q ss_pred HHHCCCCCCCCC--------CCHHHHCCCCCC----CE---EEEECC-------------------CEEEEEEEEECCCH Q ss_conf 211033100121--------101110223467----41---673179-------------------72137996403410 Q gi|254781004|r 484 KDAIGRDWQCGT--------IQVDFNLPSRFN----AF---YVNSHS-------------------EKCHPVMIHRAVFG 529 (652) Q Consensus 484 ~d~~gr~~~~~t--------iq~df~~p~~f~----l~---y~~~dg-------------------~~~~pvmihr~~~G 529 (652) T Consensus 231 ~~~~~~l~~l~~~l~~~~~~~~~Dl~lvRgldYYTG~vFe~~~~~~~~~~si~gGGRYD~L~~~fgg~~~PAvG-fa~-- 307 (417) T PRK00037 231 EESKAHFEELKELLDALGIPYVIDPRLVRGLDYYTGTVFEFVTDGLGAQGTVCGGGRYDGLVEQFGGPPTPAVG-FAI-- 307 (417) T ss_pred HHHHHHHHHHHHHHHHCCCCEEECHHHCCCCCCCCCEEEEEEECCCCCCCEEECCCCHHHHHHHHCCCCCCEEE-EEE-- T ss_conf 78899999999999975996998624505766534338999937876501042587315789984899787478-986-- Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHCCCCEEEEE Q ss_conf 37899999999738708873378089998579668999999999999879889997589663676665543489889998 Q gi|254781004|r 530 SIERFIGIMIENFKGNLPLWLSPIQAIVTTITSSAVEYAQEIANLLKSHHLSIETDFRNETINYKIREHSIKKIPIIIIC 609 (652) Q Consensus 530 s~eR~ia~liE~~~g~~P~wLAP~QV~Iipi~e~~~eya~~i~~~L~~~girV~~Ddr~~~~G~Kir~a~l~giP~~ivI 609 (652) T Consensus 308 gieRi~~~l~~~-------~~~~~~v~v~~~~~~~~~~a~~i~~~Lr~~gi~v~~~~~~~~l~k~~~~A~~~~~~~~viv 380 (417) T PRK00037 308 GIERLLLLLEEL-------GLESVDVYVVVLGEEAEAAALKLAEKLRAAGIRVELDLGGRKLKKQFKYADKSGARFALIL 380 (417) T ss_pred CHHHHHHHHHHC-------CCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEE T ss_conf 399999999964-------8787767999659899999999999999889969995899899999999998797999998 Q ss_pred CHHHHHCCCEEEEECCCCCEEEECHHHHHHHHHHH Q ss_conf 74253258189998898866334299999999873 Q gi|254781004|r 610 GDKEASERSIGIRRFGSTTTQKVSLLDAIPILTKE 644 (652) Q Consensus 610 G~ke~e~~~Vtir~R~~~~~~~i~lee~i~~l~~e 644 (652) T Consensus 381 G~~E~~~~~v~vk~l~~g~q~~v~~~~l~~~lk~~ 415 (417) T PRK00037 381 GEDELANGTVTLKDLRTGEQETVALDELVEFLKEL 415 (417) T ss_pred CCHHHHCCEEEEEECCCCCEEEEEHHHHHHHHHHH T ss_conf 74488679689998999971796599999999997 |
|
| >TIGR00389 glyS_dimeric glycyl-tRNA synthetase; InterPro: IPR002315 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=100.00 E-value=0 Score=359.76 Aligned_cols=379 Identities=22% Similarity=0.289 Sum_probs=279.5 Q ss_pred CCEEEEECCHHHHHHHHHHHHHHHH--HCC-CEEEECCCCCCCCCCCCCCCCCCCCCCCCEEECCCCC------------ Q ss_conf 7435650107899999999999887--689-6385554324431000112100125554201001456------------ Q gi|254781004|r 263 SGVIFWHRKGWKIFQTLISYMRRKI--KDD-YEEINTPQVLDQHLWQQSGHWDSYRANMFAVKCADDT------------ 327 (652) Q Consensus 263 ~G~~~wlP~G~~i~~~ie~~ir~~~--~~G-~~eV~tP~l~~~~Lw~~SGh~~~y~~~mf~~~~~~~~------------ 327 (652) T Consensus 27 aG~~DyGPLG~~Lk~~I~~~wr~~fi~~e~d~~~id~P~i~~~evlKASGHvd~F~D~~v~Ck~C~~~fRADHl~e~~~~ 106 (606) T TIGR00389 27 AGFWDYGPLGAVLKNNIKNAWRKFFIINERDVLEIDSPIITPEEVLKASGHVDNFTDPMVDCKKCKERFRADHLIEEKLG 106 (606) T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHCCCCCCCCCCEEECCCCCCEECHHHHHHHHHH T ss_conf 20010157247899999998887511103653464245337257997528645673122673788804010123256651 Q ss_pred --CCC----------------------------------------------------------------------CCEEE Q ss_conf --777----------------------------------------------------------------------82377 Q gi|254781004|r 328 --IKD----------------------------------------------------------------------LRTFA 335 (652) Q Consensus 328 --~~~----------------------------------------------------------------------~~~~~ 335 (652) T Consensus 107 ~~~~~dqqiK~V~~~D~K~~E~iL~~iDG~~~~eL~E~m~~~~i~CP~C~g~~nl~~v~~FNLMF~T~IG~~~~~~~~gY 186 (606) T TIGR00389 107 KDVEGDQQIKDVKLDDVKEYEKILAKIDGETGPELKEVMEKYDINCPNCGGENNLTEVRSFNLMFQTEIGVVGDSKRKGY 186 (606) T ss_pred HHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHCCCCCEEEECCCCCCCCEEE T ss_conf 00047610012685457779989755078711567877634278898223545613501204541102113347762241 Q ss_pred ECCCCHHHHHHHHHHCCCCHH-HCCHHHHHHEEEECCCCCCCCEEEEECCCCCCCCCEEECCH-HHHHHHHHHHHHHHHH Q ss_conf 434312577776520122223-10432000100012787645200010563533442101053-7678878999999887 Q gi|254781004|r 336 LKPMNCPGHVAVFNHGLKSYR-ELPVRLAEFGSVYRNEPSGSLHGLMRVRGFTQDDAHVFCTK-EQMFNECLKIHNLIIS 413 (652) Q Consensus 336 LkPmncp~h~~i~~~~~~SYr-dLPlrl~e~~~~~R~E~sg~l~GL~R~ReF~~~Dah~F~~~-eq~~~e~~~~~~~~~~ 413 (652) T Consensus 187 LRPETAQG~FinFk~LL~~~r~klPFgvAQiGKSfRNEIsP-r~gl~R~REF~QaE~E~FV~P~~k~h~~F~~~~~~~~~ 265 (606) T TIGR00389 187 LRPETAQGIFINFKRLLQFFRNKLPFGVAQIGKSFRNEISP-RQGLIRLREFEQAEIEFFVDPEDKSHPKFEEVKQEVVP 265 (606) T ss_pred CCCHHCCCCCHHHHHHHHHHCCCCCEEEEEECCEEECCCCC-CCCEEEECHHHHHHHHHCCCCCCCCCCCHHHHHHCCCC T ss_conf 47601047512168999974589964899744136040038-98757103154466874259600167200145405001 Q ss_pred HHHHH------C--CCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHC-CCCCCCCCCCCCCCCCCCCCCC-CCCCH Q ss_conf 66552------1--3321000146531125860357789999999998502-1212566752055555545543-21100 Q gi|254781004|r 414 IYKDF------G--FEKIMVKLSTRPEKRVGSDALWDDAENIMKGVLDTIK-NSSQDRINTGVLLGEGAFYGPK-FEYIL 483 (652) Q Consensus 414 v~~~~------g--~~~~~~~ls~~~~~~~g~~~~~~~ae~~l~~~l~~~~-~~~~~~~~~~~~~g~~afygpk-id~~~ 483 (652) T Consensus 266 Llp~~R~~~E~g~~~~~v~~t~gEAVe~G~i~ne~L~YFia~~~~FL~~igkI~~dklRFrqH~~~E~AHYA~dcwD~E~ 345 (606) T TIGR00389 266 LLPAERQMQESGESEKPVKMTIGEAVEKGIIENETLAYFIALVKRFLLEIGKINPDKLRFRQHLKNEMAHYAKDCWDAEI 345 (606) T ss_pred CCCCCCCCHHCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHEEEEE T ss_conf 36764540001576405444178886346521006899999999999865278878852331360045565553623556 Q ss_pred HHH-CCCCCCCC-------------------------------------------------------------------- Q ss_conf 211-03310012-------------------------------------------------------------------- Q gi|254781004|r 484 KDA-IGRDWQCG-------------------------------------------------------------------- 494 (652) Q Consensus 484 ~d~-~gr~~~~~-------------------------------------------------------------------- 494 (652) T Consensus 346 ~t~~yGwiE~~GiADR~~yDL~~Hsk~s~~~L~Vf~~~DeP~~~~~~~i~~~~k~~G~~FrkdAk~ies~L~~lse~dl~ 425 (606) T TIGR00389 346 LTSRYGWIEVVGIADRTDYDLTQHSKFSGKDLSVFQELDEPREVTKREIELNKKKLGPKFRKDAKKIESALENLSEDDLE 425 (606) T ss_pred ECCCCCCEEEEEEECCCCCCHHHHHHHHCCCCEEEECCCCCEEEEEEEEEEECCCCCCHHHCHHHHHHHHHHHCCHHHHH T ss_conf 65798738998740677221688999849896163057887257788987301346843201178999999732874789 Q ss_pred ------------CCCHHH---H-CCCCCCCE--EEEECCCEEEEEEEEECCCHHHHHHHHHHHHHH-------C-----C Q ss_conf ------------110111---0-22346741--673179721379964034103789999999973-------8-----7 Q gi|254781004|r 495 ------------TIQVDF---N-LPSRFNAF--YVNSHSEKCHPVMIHRAVFGSIERFIGIMIENF-------K-----G 544 (652) Q Consensus 495 ------------tiq~df---~-~p~~f~l~--y~~~dg~~~~pvmihr~~~Gs~eR~ia~liE~~-------~-----g 544 (652) T Consensus 426 ~~~~~l~~~G~f~~~~dG~~ve~~~~~v~i~~~~~v~~~ek~iP~VI-EPS~G-i~Ri~Y~~l~hsy~~~~~d~e~R~vL 503 (606) T TIGR00389 426 EVEKELDEEGKFIIEVDGKEVEILKDLVEIKEVEEVVTGEKYIPHVI-EPSFG-IDRIIYSLLEHSYQEEVLDGEEREVL 503 (606) T ss_pred HHHHHHHCCCEEEEEECCEEEEECHHHEEEEEEEEEEEEEEEECCEE-ECCCH-HHHHHHHHHHHHHCCCCCCCCCEEEE T ss_conf 99998634986999985818987121242666678885348806076-16750-37899999987432351027861374 Q ss_pred CCCCCCCCEEEEEEECC--HHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHCCCCEEEEECHHHHHCCCEEEE Q ss_conf 08873378089998579--6689999999999998798899975896636766655434898899987425325818999 Q gi|254781004|r 545 NLPLWLSPIQAIVTTIT--SSAVEYAQEIANLLKSHHLSIETDFRNETINYKIREHSIKKIPIIIICGDKEASERSIGIR 622 (652) Q Consensus 545 ~~P~wLAP~QV~Iipi~--e~~~eya~~i~~~L~~~girV~~Ddr~~~~G~Kir~a~l~giP~~ivIG~ke~e~~~Vtir 622 (652) T Consensus 504 ~Lp~~~aP~kv~VlPLvnk~~l~~~a~~i~~~Lr~~~i~~~~DdSG~SIGkRYrR~DEIGtPF~vT~DfetlED~tVT~R 583 (606) T TIGR00389 504 RLPPHVAPIKVAVLPLVNKEELKEIAKEIEQALRKSGIIIEYDDSGTSIGKRYRRADEIGTPFCVTVDFETLEDETVTIR 583 (606) T ss_pred ECCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHCCCCCCCCCEEEECCCCCCCCEEEEE T ss_conf 15866285679996311565407899999999862697699877898610031014436887158742531107646773 Q ss_pred ECCCCCEEEECHHHHHHHHHHH Q ss_conf 8898866334299999999873 Q gi|254781004|r 623 RFGSTTTQKVSLLDAIPILTKE 644 (652) Q Consensus 623 ~R~~~~~~~i~lee~i~~l~~e 644 (652) T Consensus 584 eRds~~QvRv~I~eL~~~~~~~ 605 (606) T TIGR00389 584 ERDSLKQVRVKIEELVSYLKKL 605 (606) T ss_pred ECCCCEEEEEEHHHHHHHHHHC T ss_conf 0788404536634389999860 |
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases . In eubacteria, glycyl-tRNA synthetase (6.1.1.14 from EC) is an alpha2/beta2 tetramer composed of 2 different subunits , , . In some eubacteria, in archaea and eukaryota, glycyl-tRNA synthetase is an alpha2 dimer, this family. It belongs to class IIc and is one of the most complex synthetases. What is most interesting is the lack of similarity between the two types: divergence at the sequence level is so great that it is impossible to infer descent from common genes. The alpha (see IPR002310 from INTERPRO) and beta subunits (see IPR002311 from INTERPRO) also lack significant sequence similarity. However, they are translated from a single mRNA , and a single chain glycyl-tRNA synthetase from Chlamydia trachomatis has been found to have significant similarity with both domains, suggesting divergence from a single polypeptide chain . The sequence and crystal structure of the homodimeric glycyl-tRNA synthetase from Thermus thermophilus, shows that each monomer consists of an active site strongly resembling that of the aspartyl and seryl enzymes, a C-terminal anticodon recognition domain of 100 residues and a third domain unusually inserted between motifs 1 and 2 almost certainly interacting with the acceptor arm of tRNA(Gly). The C-terminal domain has a novel five-stranded parallel-antiparallel beta-sheet structure with three surrounding helices. The active site residues most probably responsible for substrate recognition, in particular in the Gly binding pocket, can be identified by inference from aspartyl-tRNA synthetase due to the conserved nature of the class II active site , .; GO: 0000166 nucleotide binding, 0004820 glycine-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006426 glycyl-tRNA aminoacylation, 0005737 cytoplasm. |
| >COG0423 GRS1 Glycyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=0 Score=339.47 Aligned_cols=376 Identities=22% Similarity=0.285 Sum_probs=254.1 Q ss_pred CCCEEEEECCHHHHHHHHHHHHHHHH--H-CCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEECCCCC----------- Q ss_conf 87435650107899999999999887--6-896385554324431000112100125554201001456----------- Q gi|254781004|r 262 GSGVIFWHRKGWKIFQTLISYMRRKI--K-DDYEEINTPQVLDQHLWQQSGHWDSYRANMFAVKCADDT----------- 327 (652) Q Consensus 262 ~~G~~~wlP~G~~i~~~ie~~ir~~~--~-~G~~eV~tP~l~~~~Lw~~SGh~~~y~~~mf~~~~~~~~----------- 327 (652) T Consensus 29 ~~GfyDYGPlG~~LK~nI~~~Wrk~fV~~~e~~~eIdtpii~p~~V~kASGHvd~FsDplv~c~~c~~~yRADHLiEe~l 108 (558) T COG0423 29 LAGFYDYGPLGVELKNNIKEAWRKSFVTEREDVVEIDTPIILPEEVWKASGHVDKFSDPLVECKKCGERYRADHLIEEYL 108 (558) T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHEECCCCEEEECCCCCCCHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHHHHH T ss_conf 34653257751899999999999986624687678425544868886434761346562043462453453368889876 Q ss_pred ----------------------------------------------CCCCCEEEECCCCHHHHHHHHHHCCCCHH-HCCH Q ss_conf ----------------------------------------------77782377434312577776520122223-1043 Q gi|254781004|r 328 ----------------------------------------------IKDLRTFALKPMNCPGHVAVFNHGLKSYR-ELPV 360 (652) Q Consensus 328 ----------------------------------------------~~~~~~~~LkPmncp~h~~i~~~~~~SYr-dLPl 360 (652) T Consensus 109 ~~~~~~~~~~~e~~~ii~~~~ir~p~~g~~l~~v~~FNLMF~T~IGp~~~~~~YLRPETAQGiFvnFk~l~~~~r~klPF 188 (558) T COG0423 109 GKDGHGNMSPEELTEIIREYDIRCPECGGELNEVREFNLMFKTTIGPVEDSLGYLRPETAQGIFVNFKNLLEFARNKLPF 188 (558) T ss_pred HHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCEEECCCCCCHHHHHHHHHHHHHCCCCCE T ss_conf 41034557878888888861775887688668750344666731457788632456510021215369999975368984 Q ss_pred HHHHHEEEECCCCCCCCEEEEECCCCCCCCCEEECCHHH-------------------H--HH--------------HHH Q ss_conf 200010001278764520001056353344210105376-------------------7--88--------------789 Q gi|254781004|r 361 RLAEFGSVYRNEPSGSLHGLMRVRGFTQDDAHVFCTKEQ-------------------M--FN--------------ECL 405 (652) Q Consensus 361 rl~e~~~~~R~E~sg~l~GL~R~ReF~~~Dah~F~~~eq-------------------~--~~--------------e~~ 405 (652) T Consensus 189 giaQIGKsfRNEISP-r~gl~R~REF~QaEiE~Fv~P~~k~~p~f~~v~~~~l~l~~~~~q~~~~~~EAv~~g~~~n~~~ 267 (558) T COG0423 189 GIAQIGKSFRNEISP-RNGLFRTREFEQAEIEFFVDPEEKEHPKFNEVKDEKLPLLPREAQEEGTEEEAVEEGIVENETL 267 (558) T ss_pred EEEEECHHHCCCCCC-CCCEEEHHHHHHHEEEEEECCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHCCEECCHHH T ss_conf 888623101465276-6536651234312013588777556863333321002466477764100345544154504438 Q ss_pred -HHHHHHHHHHHHHCCCCCEECCCCCCCCC-----------------CCCHHHH---HHHHHHHHHHHHHHCCCCCCCCC Q ss_conf -99999887665521332100014653112-----------------5860357---78999999999850212125667 Q gi|254781004|r 406 -KIHNLIISIYKDFGFEKIMVKLSTRPEKR-----------------VGSDALW---DDAENIMKGVLDTIKNSSQDRIN 464 (652) Q Consensus 406 -~~~~~~~~v~~~~g~~~~~~~ls~~~~~~-----------------~g~~~~~---~~ae~~l~~~l~~~~~~~~~~~~ 464 (652) T Consensus 268 ~y~~~~~~~fl~~lGI~~e~lRfrqh~~~E~AHYa~~twD~E~~~~~~gWiE~~GiAdRtdYDL~~H~k~s~~~l~v~~~ 347 (558) T COG0423 268 AYFIARTKFFLEDLGIDPEKLRFRQHLPEELAHYSKDTWDAEYKFPFGGWIELVGIADRTDYDLSRHSKFSGEDLTVFRE 347 (558) T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHCCEEEEEECCCCCEEEEEEEECCCCCCHHHHHHHCCCCCEEEEC T ss_conf 99999999999980999898066523908776654402327996378866999986135544556565403666223321 Q ss_pred CC--------CCCCCCCCCCCCCCCCHHH---HCC------CCCCCCCCCHHHHCCCCCCCEEEEECCCEEEEEEEEECC Q ss_conf 52--------0555555455432110021---103------310012110111022346741673179721379964034 Q gi|254781004|r 465 TG--------VLLGEGAFYGPKFEYILKD---AIG------RDWQCGTIQVDFNLPSRFNAFYVNSHSEKCHPVMIHRAV 527 (652) Q Consensus 465 ~~--------~~~g~~afygpkid~~~~d---~~g------r~~~~~tiq~df~~p~~f~l~y~~~dg~~~~pvmihr~~ 527 (652) T Consensus 348 ~~ePk~v~~~~~~~~~~~~gp~~k~~a~~v~~~~se~~~~~~~~~~~~~~~~~~---~i~~~~-~~~~e~~iP~VIE-PS 422 (558) T COG0423 348 YDEPKEVERWHSKVDLKFLGPEFKKDAKKVAEALSELEELEKELNGYEVSKDLV---IIEEVE-KVTGEKYIPHVIE-PS 422 (558) T ss_pred CCCCCEEEEEECCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHH---HHEEEE-ECCCCEECCCEEC-CC T ss_conf 477622331001466210381445566777654456666653047621353100---100110-0247550671565-67 Q ss_pred CHHHHHHHHHHHHHH-----C------CCCCCCCCCEEEEEEECC--HHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHH Q ss_conf 103789999999973-----8------708873378089998579--668999999999999879889997589663676 Q gi|254781004|r 528 FGSIERFIGIMIENF-----K------GNLPLWLSPIQAIVTTIT--SSAVEYAQEIANLLKSHHLSIETDFRNETINYK 594 (652) Q Consensus 528 ~Gs~eR~ia~liE~~-----~------g~~P~wLAP~QV~Iipi~--e~~~eya~~i~~~L~~~girV~~Ddr~~~~G~K 594 (652) T Consensus 423 fG-idRi~y~~l~~ay~~ee~~e~R~vLrl~p~lAPikvaVlPL~~k~~l~~~a~~i~~~L~~~~~~v~yDdsG-sIGrR 500 (558) T COG0423 423 FG-IDRIFYALLEHAYTEEEVEEKRIVLRLPPDLAPIKVAVLPLVKKDELVEIAKEIFEKLRELGFNVDYDDSG-SIGRR 500 (558) T ss_pred CC-CHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHHCCCEEEECCCC-CHHHH T ss_conf 77-11899999987620113566505995586558527999960224214689999999998539669862888-37665 Q ss_pred HHHHHHCCCCEEEEECHHHHHCCCEEEEECCCCCEEEECHHHHHHHHHHHC Q ss_conf 665543489889998742532581899988988663342999999998731 Q gi|254781004|r 595 IREHSIKKIPIIIICGDKEASERSIGIRRFGSTTTQKVSLLDAIPILTKES 645 (652) Q Consensus 595 ir~a~l~giP~~ivIG~ke~e~~~Vtir~R~~~~~~~i~lee~i~~l~~e~ 645 (652) T Consensus 501 YrR~DEIGtPfcVTvD~eTleD~tVTiReRDs~~QvRv~i~el~~~l~~~~ 551 (558) T COG0423 501 YRRQDEIGTPFCVTVDFETLEDNTVTIRERDSMEQVRVKIEELADYLRELI 551 (558) T ss_pred HHHCCCCCCCEEEEECCCCCCCCCEEEEECCCHHEEEEEHHHHHHHHHHHH T ss_conf 553344589618995477566784798625761204545999999999984 |
|
| >KOG2298 consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-33 Score=246.12 Aligned_cols=382 Identities=19% Similarity=0.229 Sum_probs=235.7 Q ss_pred EEEECC----C--CCCEEEEECCHHHHHHHHHHHHHHHH--HCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEECCCC Q ss_conf 044226----7--87435650107899999999999887--689638555432443100011210012555420100145 Q gi|254781004|r 255 LFHIAE----D--GSGVIFWHRKGWKIFQTLISYMRRKI--KDDYEEINTPQVLDQHLWQQSGHWDSYRANMFAVKCADD 326 (652) Q Consensus 255 lf~~~~----~--~~G~~~wlP~G~~i~~~ie~~ir~~~--~~G~~eV~tP~l~~~~Lw~~SGh~~~y~~~mf~~~~~~~ 326 (652) T Consensus 22 rfFy~~sf~IYgGVsGLyD~GP~Gcalk~Nil~~WRkhFilEE~MlEvdct~ltP~~VlkaSGHVdkF~D~mvkD~ktGe 101 (599) T KOG2298 22 RFFYDPSFAIYGGVSGLYDFGPPGCALKSNILSLWRKHFILEEDMLEVDCTMLTPEPVLKASGHVDKFADWMVKDEKTGE 101 (599) T ss_pred CEEECCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCEEECCCCCCCHHHHHCCCCHHHHHHHHHCCCCCCC T ss_conf 22125404653473322125998605677699999998741302044016757808876346646666677740755652 Q ss_pred --------------------------------------------------------------------------CCCCCC Q ss_conf --------------------------------------------------------------------------677782 Q gi|254781004|r 327 --------------------------------------------------------------------------TIKDLR 332 (652) Q Consensus 327 --------------------------------------------------------------------------~~~~~~ 332 (652) T Consensus 102 cfRADHLvk~~~~rl~~~~~~~~~~e~e~iLa~~d~~s~~el~~~~~kyni~sP~tgn~Ls~p~~FNLMF~T~IGpsG~~ 181 (599) T KOG2298 102 CFRADHLVKDAEERLKKKASAEVKAEMEKILAKLDGYSGQELGELISKYNIKSPVTGNDLSEPRQFNLMFETQIGPSGGL 181 (599) T ss_pred EEHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCC T ss_conf 22056788999986201122677888999998750787588888998615789876887677711110011121677785 Q ss_pred EEEECCCCHHHHHHHHHHCCC-CHHHCCHHHHHHEEEECCCCCCCCEEEEECCCCCCCCCEEECCHHHH-HHHHHHHHHH Q ss_conf 377434312577776520122-22310432000100012787645200010563533442101053767-8878999999 Q gi|254781004|r 333 TFALKPMNCPGHVAVFNHGLK-SYRELPVRLAEFGSVYRNEPSGSLHGLMRVRGFTQDDAHVFCTKEQM-FNECLKIHNL 410 (652) Q Consensus 333 ~~~LkPmncp~h~~i~~~~~~-SYrdLPlrl~e~~~~~R~E~sg~l~GL~R~ReF~~~Dah~F~~~eq~-~~e~~~~~~~ 410 (652) T Consensus 182 kgyLRPETAQG~FlNFkrlle~N~~KlPFA~AqiG~~fRNEISp-RsGLlRvrEF~maEIEHFvdP~~K~h~kF~~V~~~ 260 (599) T KOG2298 182 KGYLRPETAQGQFLNFKRLLEFNQGKLPFASAQIGKSFRNEISP-RSGLLRVREFTMAEIEHFVDPLLKSHPKFSLVAAE 260 (599) T ss_pred CCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHCHHHHHCCCC-CCCCEEEEEEEHHHHHCCCCCCCCCCHHHHHHHHH T ss_conf 54327400123101489998752887763488746576513375-55743678754677653489777787366655431 Q ss_pred HHH-----------------------------------------HHHHHCCCCCEECCCCCCCCCCCCHHHHHHHHHHH- Q ss_conf 887-----------------------------------------66552133210001465311258603577899999- Q gi|254781004|r 411 IIS-----------------------------------------IYKDFGFEKIMVKLSTRPEKRVGSDALWDDAENIM- 448 (652) Q Consensus 411 ~~~-----------------------------------------v~~~~g~~~~~~~ls~~~~~~~g~~~~~~~ae~~l- 448 (652) T Consensus 261 ~l~l~~~~~q~~g~~a~~~~lgEaV~kg~V~netlGyfi~Ri~~fL~~lGid~~rlRFRqH~-----~nEMAHYA~DCWD 335 (599) T KOG2298 261 KLRLFPRDKQLSGQSAQKVALGEAVAKGTVNNETLGYFIGRIYLFLNKLGIDKERLRFRQHM-----ANEMAHYAFDCWD 335 (599) T ss_pred HHHHCCHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHCCHHHHH-----HHHHHHHHCCCCC T ss_conf 55423323443465056747989987604453036788999999999847655321067776-----5333333015322 Q ss_pred -----------------HHHHHHHCCCCCCC--------------CCCCCCCCCCCCCCCCCCCC---HHHHCCCCCCCC Q ss_conf -----------------99998502121256--------------67520555555455432110---021103310012 Q gi|254781004|r 449 -----------------KGVLDTIKNSSQDR--------------INTGVLLGEGAFYGPKFEYI---LKDAIGRDWQCG 494 (652) Q Consensus 449 -----------------~~~l~~~~~~~~~~--------------~~~~~~~g~~afygpkid~~---~~d~~gr~~~~~ 494 (652) T Consensus 336 aEi~tSYGWIEcVG~ADRs~yDL~~Hs~~t~~~Lv~~~kl~ePkeve~~~i~~~kk~~g~~fk~~ak~v~~~l~~~s~~e 415 (599) T KOG2298 336 AEIKTSYGWIECVGCADRAAYDLSTHSRASKVWLVAELRLREPKEVEFAVIPPNKKELGCAFKKDAKGVNETLIFPSGKE 415 (599) T ss_pred HHHHHCCCCEEEEECCCHHHEEEECCCCCCCCCEEEHHHCCCCCEEEEEEECCCHHHCCHHHHHCCCCHHHHHHCCCHHH T ss_conf 32421027578741043544233247655677655111048860688988644244306123413510357760587889 Q ss_pred CCCHHHHCC--CCCCCEEEEEC------CC-EEE-------EEEEEECCCHHHHHHHHHHHHHH---C-------CCCCC Q ss_conf 110111022--34674167317------97-213-------79964034103789999999973---8-------70887 Q gi|254781004|r 495 TIQVDFNLP--SRFNAFYVNSH------SE-KCH-------PVMIHRAVFGSIERFIGIMIENF---K-------GNLPL 548 (652) Q Consensus 495 tiq~df~~p--~~f~l~y~~~d------g~-~~~-------pvmihr~~~Gs~eR~ia~liE~~---~-------g~~P~ 548 (652) T Consensus 416 ~~~~~~~L~~~g~~~~~v~~l~k~~v~i~~~~k~~hV~e~~P~VI-EPSfG-iGRI~Y~l~EHsF~R~~de~R~~~sfpp 493 (599) T KOG2298 416 LIETLENLGDHGLLHMYVVNLSKLHVRIKRKTKVPHVREVNPDVI-EPSFG-IGRISYQLTEHSFTRKGDEQRKVLSFPP 493 (599) T ss_pred HHHHHHHHHCCCCEEEEEEECCCCEEEEEEEEEEEEEEEECCCCC-CCCCH-HHHHHHHHHHHHHCCCCCCCCCEECCCC T ss_conf 999999762177389998740321045520242245786168755-45400-4678899876551567654564331476 Q ss_pred CCCCEEEEEEECC--HHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHCCCCEEEEECHHHHHCCCEEEEECCC Q ss_conf 3378089998579--66899999999999987988999758966367666554348988999874253258189998898 Q gi|254781004|r 549 WLSPIQAIVTTIT--SSAVEYAQEIANLLKSHHLSIETDFRNETINYKIREHSIKKIPIIIICGDKEASERSIGIRRFGS 626 (652) Q Consensus 549 wLAP~QV~Iipi~--e~~~eya~~i~~~L~~~girV~~Ddr~~~~G~Kir~a~l~giP~~ivIG~ke~e~~~Vtir~R~~ 626 (652) T Consensus 494 ~vAPiK~~v~pls~n~ef~pv~~~ls~~L~~~gis~kvdds~~SIGrrYAr~DElgipFgiTvDfdtlk~~tVTlReRdS 573 (599) T KOG2298 494 LVAPIKVALDPLSPNLEFRPVCQGLSNELTENGISVKVDDSSSSIGRRYARTDELGIPFGVTVDFDTLKNGTVTLRERDS 573 (599) T ss_pred CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHCCCCCCCCEEEEECHHHHCCCEEEEEECCC T ss_conf 53634899972367325789999999999867876996577874765321355336743799744241376079861542 Q ss_pred CCEEEECHHHHHHHHHHH Q ss_conf 866334299999999873 Q gi|254781004|r 627 TTTQKVSLLDAIPILTKE 644 (652) Q Consensus 627 ~~~~~i~lee~i~~l~~e 644 (652) T Consensus 574 ~~QvR~~i~e~~s~v~~~ 591 (599) T KOG2298 574 TMQVRMHISKLKSFLIKY 591 (599) T ss_pred HHHHHHHHHHHHHHHHHH T ss_conf 887876399899999999 |
|
| >CHL00201 syh histidine-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.9e-25 Score=190.79 Aligned_cols=362 Identities=19% Similarity=0.239 Sum_probs=226.6 Q ss_pred CCCEEEEECCHHHHHHHHHHHHHHHH-HCCCEEEECCCCCCCCCCCCCCCC--CCCCCCCCEEECCCCCCCCCCEEEECC Q ss_conf 87435650107899999999999887-689638555432443100011210--012555420100145677782377434 Q gi|254781004|r 262 GSGVIFWHRKGWKIFQTLISYMRRKI-KDDYEEINTPQVLDQHLWQQSGHW--DSYRANMFAVKCADDTIKDLRTFALKP 338 (652) Q Consensus 262 ~~G~~~wlP~G~~i~~~ie~~ir~~~-~~G~~eV~tP~l~~~~Lw~~SGh~--~~y~~~mf~~~~~~~~~~~~~~~~LkP 338 (652) T Consensus 7 ~kG~rD~lp~e~~~~~~i~~~i~~~f~~~Gf~~I~TP~lE~~e~~~~~~g~~~d~i~k~~y~f~-----D~~g~~l~LRp 81 (424) T CHL00201 7 LRGTKDILPDEIEYWQFIHEKAATLLKLANYQEIRTPIFENTELFDRGIGEETDIVNKEMYRFF-----DRGNRSITLRP 81 (424) T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHCCCCCCCCHHHHHHHEEEE-----CCCCCEEEECC T ss_conf 9999878999999999999999999998599250475404198862357874205666532545-----59998888678 Q ss_pred CCHHHHHHHHHHCCCCHHHCCHHHHHHEEEECCCCCCCCEEEEECCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 31257777652012222310432000100012787645200010563533442101053767887899999988766552 Q gi|254781004|r 339 MNCPGHVAVFNHGLKSYRELPVRLAEFGSVYRNEPSGSLHGLMRVRGFTQDDAHVFCTKEQMFNECLKIHNLIISIYKDF 418 (652) Q Consensus 339 mncp~h~~i~~~~~~SYrdLPlrl~e~~~~~R~E~sg~l~GL~R~ReF~~~Dah~F~~~eq~~~e~~~~~~~~~~v~~~~ 418 (652) T Consensus 82 D~T~piaR~~~~~~~~~~~~P~r~~y~g~vfR~e~pq--~G--R~REF~Q~gvEiiG~~~~~--aDaEvi~l~~~~l~~l 155 (424) T CHL00201 82 EGTASIVRAFIENRMAYHMRPQRLWYSGPMFRYERPQ--SG--RQRQFHQLGIEFIGSSDPR--ADMEVIHLAMTLFNEL 155 (424) T ss_pred CCHHHHHHHHHHCCCCCCCCCEEEEEECCEEECCCCC--CC--CCCHHHHCCEEEECCCCHH--HHHHHHHHHHHHHHHC T ss_conf 7709999999974765579987899875478058987--88--6421041462000689828--7899999999999865 Q ss_pred CCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHH----HHCCCCCCCCCCC----CC---CCCCCC--CCCCCCCCH-H Q ss_conf 13321000146531125860357789999999998----5021212566752----05---555554--554321100-2 Q gi|254781004|r 419 GFEKIMVKLSTRPEKRVGSDALWDDAENIMKGVLD----TIKNSSQDRINTG----VL---LGEGAF--YGPKFEYIL-K 484 (652) Q Consensus 419 g~~~~~~~ls~~~~~~~g~~~~~~~ae~~l~~~l~----~~~~~~~~~~~~~----~~---~g~~af--ygpkid~~~-~ 484 (652) T Consensus 156 gl~~~~i~in~~g-----~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~l~~~~~~ 230 (424) T CHL00201 156 PVHRLVLDINSIG-----KMEDRALYRDKLTEYLSQYNQDLDEDSQNRLSSNPLRILDSKNGATQEILDMAPLLSDFLSL 230 (424) T ss_pred CCCCEEHHCCCCC-----CHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCHHHHHHHHCHHHHHHHCH T ss_conf 9652010003325-----59988889999999999987543778775321148999873060479998644320102048 Q ss_pred HHC-------CCCCC-CCCCCHHHHCCCCC--------CC---------------EE---EEECCCEEEEEEEEECCCHH Q ss_conf 110-------33100-12110111022346--------74---------------16---73179721379964034103 Q gi|254781004|r 485 DAI-------GRDWQ-CGTIQVDFNLPSRF--------NA---------------FY---VNSHSEKCHPVMIHRAVFGS 530 (652) Q Consensus 485 d~~-------gr~~~-~~tiq~df~~p~~f--------~l---------------~y---~~~dg~~~~pvmihr~~~Gs 530 (652) T Consensus 231 ~~~~~l~~l~~~l~~~~v~~~~D~slvRGLdYYTG~VFE~~~~~~~~~~si~gGGRYD~Lv~~fgg~~~Pav---GfaiG 307 (424) T CHL00201 231 ESEEHFADVCEYLANLNIPYKINPKLVRGLDYYNDTAFEIKTLGSDAQDTVCGGGRYDSLVEQLGGPKTPAV---GWAIG 307 (424) T ss_pred HHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHCCCCCCCEE---EEEEC T ss_conf 889999999999984387645287771576764573699996788862342378770778997299999857---78843 Q ss_pred HHHHHHHHHHHHCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHCCCCEEEEEC Q ss_conf 78999999997387088733780899985796689999999999998798899975896636766655434898899987 Q gi|254781004|r 531 IERFIGIMIENFKGNLPLWLSPIQAIVTTITSSAVEYAQEIANLLKSHHLSIETDFRNETINYKIREHSIKKIPIIIICG 610 (652) Q Consensus 531 ~eR~ia~liE~~~g~~P~wLAP~QV~Iipi~e~~~eya~~i~~~L~~~girV~~Ddr~~~~G~Kir~a~l~giP~~ivIG 610 (652) T Consensus 308 ieRl~~~l-~~-~~~~~--~~~~~~~v~~~~~~~~~~~~~ia~~LR~~gi~~e~~~~~~~l~kql~~A~k~~~~~~iiiG 383 (424) T CHL00201 308 IERLLLIA-KD-NILLP--KPSIDFYIATKGNVAIKIAFSIQRFLHNQGLKSELDLSSSNFSKQIKQAAKKRALACIILG 383 (424) T ss_pred HHHHHHHH-HH-CCCCC--CCCCCEEEEECCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHCCCCEEEEEC T ss_conf 99999999-73-37777--7788589997784999999999999998899399970899999999999987999999985 Q ss_pred HHHHHCCCEEEEECCCCCEE---EECHHHHHHHHHHHCC Q ss_conf 42532581899988988663---3429999999987314 Q gi|254781004|r 611 DKEASERSIGIRRFGSTTTQ---KVSLLDAIPILTKESL 646 (652) Q Consensus 611 ~ke~e~~~Vtir~R~~~~~~---~i~lee~i~~l~~e~~ 646 (652) T Consensus 384 ~~E~~~~~v~lK~l~sg~Q~~~~~~~l~~~i~~lkk~~~ 422 (424) T CHL00201 384 DNEIARGAITIKWLDSQIQENSQYLNFKDFISYLKKKIL 422 (424) T ss_pred CHHHHCCEEEEEECCCCCCCCEECCCHHHHHHHHHHHHH T ss_conf 158868968998689988752302479999999999872 |
|
| >COG0124 HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.94 E-value=5e-24 Score=185.61 Aligned_cols=365 Identities=19% Similarity=0.252 Sum_probs=233.7 Q ss_pred CCCEEEEECCHHHHHHHHHHHHHHHH-HCCCEEEECCCCCCCCCCCC-CCCCCC-CCCCCCEEECCCCCCCCCCEEEECC Q ss_conf 87435650107899999999999887-68963855543244310001-121001-2555420100145677782377434 Q gi|254781004|r 262 GSGVIFWHRKGWKIFQTLISYMRRKI-KDDYEEINTPQVLDQHLWQQ-SGHWDS-YRANMFAVKCADDTIKDLRTFALKP 338 (652) Q Consensus 262 ~~G~~~wlP~G~~i~~~ie~~ir~~~-~~G~~eV~tP~l~~~~Lw~~-SGh~~~-y~~~mf~~~~~~~~~~~~~~~~LkP 338 (652) T Consensus 7 prG~~D~lp~d~~~~~~i~~~~~~v~~~yGf~eI~TPifE~telf~r~~Ge~td~v~kemY~F~-----Dkggr~laLRp 81 (429) T COG0124 7 PRGTRDFLPEDMALREYIESTIRKVFESYGFSEIRTPIFEYTELFARKSGEETDVVEKEMYTFK-----DKGGRSLALRP 81 (429) T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCHHHHHHCCCCCCCCCCCCEEEEE-----ECCCCEEEECC T ss_conf 9986655867789999999999999998099765575511166762016974333321028999-----48998898446 Q ss_pred CCHHHHHHHHHHCCCCHHHCCHHHHHHEEEECCCCCCCCEEEEECCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 31257777652012222310432000100012787645200010563533442101053767887899999988766552 Q gi|254781004|r 339 MNCPGHVAVFNHGLKSYRELPVRLAEFGSVYRNEPSGSLHGLMRVRGFTQDDAHVFCTKEQMFNECLKIHNLIISIYKDF 418 (652) Q Consensus 339 mncp~h~~i~~~~~~SYrdLPlrl~e~~~~~R~E~sg~l~GL~R~ReF~~~Dah~F~~~eq~~~e~~~~~~~~~~v~~~~ 418 (652) T Consensus 82 e~Tapv~R~~~en~~~~~-~p~k~yy~g~vfRyErPQ----~GR~RqF~Q~g~E~iG~~~--~~~DAEvi~l~~~~l~~l 154 (429) T COG0124 82 ELTAPVARAVAENKLDLP-KPLKLYYFGPVFRYERPQ----KGRYRQFYQFGVEVIGSDS--PDADAEVIALAVEILEAL 154 (429) T ss_pred CCCHHHHHHHHHCCCCCC-CCEEEEEECCEECCCCCC----CCCCEEEEECCEEEECCCC--CCCCHHHHHHHHHHHHHC T ss_conf 674999999995622036-872599833562378888----8875036876767767998--653899999999999974 Q ss_pred CCCCCEECCCCCCCC-----CCCCH--HH----HHHHHHHHHHHHHHHCCCC--CCCCCCCCCCCC--CCCC--CCCC-C Q ss_conf 133210001465311-----25860--35----7789999999998502121--256675205555--5545--5432-1 Q gi|254781004|r 419 GFEKIMVKLSTRPEK-----RVGSD--AL----WDDAENIMKGVLDTIKNSS--QDRINTGVLLGE--GAFY--GPKF-E 480 (652) Q Consensus 419 g~~~~~~~ls~~~~~-----~~g~~--~~----~~~ae~~l~~~l~~~~~~~--~~~~~~~~~~g~--~afy--gpki-d 480 (652) T Consensus 155 Gi~~~~l~iN~~g~l~~~~~~~gi~~~~~l~~~ldk~~k~~~~~L~e~~~~r~~~n~lr~ld~k~~~~~~~~~~ap~i~~ 234 (429) T COG0124 155 GIGGFTLEINSRGILEGRLEYLGIDQREALLRYLDKLDKIGKLELDEDSKRRLKTNPLRVLDSKKDSDQELLKNAPELLD 234 (429) T ss_pred CCCCEEEEECCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCHHHHHHHCCHHHHH T ss_conf 99867999817644788877506116899999974654678987606655343114489998616328999852077640 Q ss_pred C-------------CHHHHCCCCCC--CC-CCCHHHHCCCCCCCEEEE------------------ECCCEEEEEEEEEC Q ss_conf 1-------------00211033100--12-110111022346741673------------------17972137996403 Q gi|254781004|r 481 Y-------------ILKDAIGRDWQ--CG-TIQVDFNLPSRFNAFYVN------------------SHSEKCHPVMIHRA 526 (652) Q Consensus 481 ~-------------~~~d~~gr~~~--~~-tiq~df~~p~~f~l~y~~------------------~dg~~~~pvmihr~ 526 (652) T Consensus 235 ~~~~e~~~~~~~v~~~L~~~g~~~~id~~lvRGLDYYtg~VFE~~~~~~~~~~sI~gGGRYD~Lv~~~gG~~~pavG-Fa 313 (429) T COG0124 235 YLDEESLEHLEELLALLDALGISYEIDPSLVRGLDYYTGTVFEAVTDGLGAQGSVCGGGRYDGLVEEFGGKPTPAVG-FA 313 (429) T ss_pred HCCHHHHHHHHHHHHHHHHCCCCEEECCCEECCHHHCCCEEEEEEECCCCCCCCEECCCCCHHHHHHHCCCCCCCEE-EE T ss_conf 11288999999999999983997798663003613206668999976886443155276615899984899887136-75 Q ss_pred CCHHHHHHHHHHHHHHCCCCCCC-CCCEEEEEEECCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHCCCCE Q ss_conf 41037899999999738708873-37808999857966899999999999987988999758966367666554348988 Q gi|254781004|r 527 VFGSIERFIGIMIENFKGNLPLW-LSPIQAIVTTITSSAVEYAQEIANLLKSHHLSIETDFRNETINYKIREHSIKKIPI 605 (652) Q Consensus 527 ~~Gs~eR~ia~liE~~~g~~P~w-LAP~QV~Iipi~e~~~eya~~i~~~L~~~girV~~Ddr~~~~G~Kir~a~l~giP~ 605 (652) T Consensus 314 i--GveRl~~~l~~~~~---~~~~~~~~~v~v~~~~~~~~~~a~~la~~LR~~g~~~~~~~~~r~~k~q~k~A~~~g~~~ 388 (429) T COG0124 314 I--GVERLILALEEEGK---EDPVETRVDVYVVPLGEDAEPEALKLAQKLRAAGISVEVDYSGRKLKKQFKYADKLGARF 388 (429) T ss_pred H--HHHHHHHHHHHCCC---CCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHCCCCE T ss_conf 1--79999999997188---777677788899984861599999999999975994899855656899999998779988 Q ss_pred EEEECHHHHHCCCEEEEECCCCCEEEECHHHHHHHHHHH Q ss_conf 999874253258189998898866334299999999873 Q gi|254781004|r 606 IIICGDKEASERSIGIRRFGSTTTQKVSLLDAIPILTKE 644 (652) Q Consensus 606 ~ivIG~ke~e~~~Vtir~R~~~~~~~i~lee~i~~l~~e 644 (652) T Consensus 389 ~viiGe~E~~~g~v~vKdl~t~eq~~v~~~~~~~~~~~~ 427 (429) T COG0124 389 AVILGEDELANGVVTVKDLATGEQEEVPLDELVEELKEL 427 (429) T ss_pred EEEECCHHHHCCCEEEEECCCCCCCEECHHHHHHHHHHH T ss_conf 999852588659789734777863334499999998742 |
|
| >PRK12420 histidyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.9e-22 Score=171.35 Aligned_cols=350 Identities=15% Similarity=0.204 Sum_probs=209.2 Q ss_pred CCCCEEEEECCHHHHHHHHHHHHHHHH-HCCCEEEECCCCCCCCCCCCC-CCCCCCCCCCCEEECCCCCCCCCCEEEECC Q ss_conf 787435650107899999999999887-689638555432443100011-210012555420100145677782377434 Q gi|254781004|r 261 DGSGVIFWHRKGWKIFQTLISYMRRKI-KDDYEEINTPQVLDQHLWQQS-GHWDSYRANMFAVKCADDTIKDLRTFALKP 338 (652) Q Consensus 261 ~~~G~~~wlP~G~~i~~~ie~~ir~~~-~~G~~eV~tP~l~~~~Lw~~S-Gh~~~y~~~mf~~~~~~~~~~~~~~~~LkP 338 (652) T Consensus 6 ~~rG~rD~lp~e~~~~~~i~~~~~~~~~~~Gy~~I~tP~~E~~elf~~~~g~~~~i~kemy~f~-----D~~gr~l~LRP 80 (421) T PRK12420 6 NVKGTKDYLPEEQVLRNKIKRACEDTFERYGCKPLETPTLNMYELMSYKYGGGDEILKEIYTLQ-----DQGKRDLALRY 80 (421) T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHCCCCCCCCHHHHHEEEEE-----CCCCCEEEECC T ss_conf 9998887899999999999999999999859947247650118764244788442241107888-----18998798567 Q ss_pred CCHHHHHHHHHHCCCCHHHCCHHHHHHEEEECCCCCCCCEEEEECCCCCCCCCEEECCHH-HHHHHHHHHHHHHHHHHHH Q ss_conf 312577776520122223104320001000127876452000105635334421010537-6788789999998876655 Q gi|254781004|r 339 MNCPGHVAVFNHGLKSYRELPVRLAEFGSVYRNEPSGSLHGLMRVRGFTQDDAHVFCTKE-QMFNECLKIHNLIISIYKD 417 (652) Q Consensus 339 mncp~h~~i~~~~~~SYrdLPlrl~e~~~~~R~E~sg~l~GL~R~ReF~~~Dah~F~~~e-q~~~e~~~~~~~~~~v~~~ 417 (652) T Consensus 81 e~Ta~iaR~~a~~-~~-~~~P~k~~y~g~vfR~er-pq-~G--R~ReF~Q~GvEiiG~~~~~aDa---EiI~la~~~l~~ 151 (421) T PRK12420 81 DLTIPFAKVVAMN-PN-IRLPFKRYEIGKVFRDGP-IK-QG--RFREFIQCDVDIVGVESVMAEA---ELMSMAFELFRT 151 (421) T ss_pred CCCHHHHHHHHHC-CC-CCCCEEEEEECCEEECCC-CC-CC--CCCEEEECCEEEECCCCHHHHH---HHHHHHHHHHHH T ss_conf 7658999999977-57-778745888767785389-87-88--5551343575420788778899---999999999996 Q ss_pred HCCCCCEECCCCCCC-----CCCCCHHHHH-HH-----------HHHHHHHHHHHC--------------CCCCCCCC-C Q ss_conf 213321000146531-----1258603577-89-----------999999998502--------------12125667-5 Q gi|254781004|r 418 FGFEKIMVKLSTRPE-----KRVGSDALWD-DA-----------ENIMKGVLDTIK--------------NSSQDRIN-T 465 (652) Q Consensus 418 ~g~~~~~~~ls~~~~-----~~~g~~~~~~-~a-----------e~~l~~~l~~~~--------------~~~~~~~~-~ 465 (652) T Consensus 152 lgl~-~~i~i~~~~l~~~ll~~~~~~~e~~~~~~~~ldk~~k~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (421) T PRK12420 152 LNLE-VTIQYNNRKLLNGILQAINIPTELTSDVILSLDKIEKIGIDGVRKDVLERGISEEMADTICNTVLSCLQLSIADF 230 (421) T ss_pred CCCC-EEEEECCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHH T ss_conf 5986-599955299999888870999999999999988765316788999988668888999879998735680138998 Q ss_pred CCCCCC-------C---------CCCCC--CCCCCHHHHCCCCCCCCCCCHHH------H----CCCCCCCEEEEECCCE Q ss_conf 205555-------5---------54554--32110021103310012110111------0----2234674167317972 Q gi|254781004|r 466 GVLLGE-------G---------AFYGP--KFEYILKDAIGRDWQCGTIQVDF------N----LPSRFNAFYVNSHSEK 517 (652) Q Consensus 466 ~~~~g~-------~---------afygp--kid~~~~d~~gr~~~~~tiq~df------~----~p~~f~l~y~~~dg~~ 517 (652) T Consensus 231 ~~~~~~~~~~e~~~~l~~l~~~L~~~gi~~~i~~D~~lVRGLdYYTg~VFE~~~~~~~~~~~i~gGGRYD~Li~~fgg~~ 310 (421) T PRK12420 231 KEAFNNPLVADGVNELQQLQQYLIALGINENTIFNPFLARGLTMYTGTVYEIFLKDGSITSSIGSGGRYDNIIGAFRGDN 310 (421) T ss_pred HHHHCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHHCCCCCEEEEEEEEEECCCCCCCCCCCCCCHHHHHHHHCCCC T ss_conf 63205855599999999999999976999518776767416664200589999558764434435665054898818998 Q ss_pred -EEEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHC-CCEEEEECCCCCCCHHH Q ss_conf -1379964034103789999999973870887337808999857966899999999999987-98899975896636766 Q gi|254781004|r 518 -CHPVMIHRAVFGSIERFIGIMIENFKGNLPLWLSPIQAIVTTITSSAVEYAQEIANLLKSH-HLSIETDFRNETINYKI 595 (652) Q Consensus 518 -~~pvmihr~~~Gs~eR~ia~liE~~~g~~P~wLAP~QV~Iipi~e~~~eya~~i~~~L~~~-girV~~Ddr~~~~G~Ki 595 (652) T Consensus 311 ~~~Pav---Gfa~Gierl~~~L~~~~~--~---~~~~~v~v~~~~~~~--~a~~ia~~LR~~~gi~~~~~~~~~~lkkql 380 (421) T PRK12420 311 MNYPTV---GISFGLDVIYTALSQKET--I---SSTADVFIIPLGTEL--QCLQIAQQLRSTTSLKVELELAGRKLKRAL 380 (421) T ss_pred CCCCEE---EEEEHHHHHHHHHHCCCC--C---CCCCCEEEEECCCHH--HHHHHHHHHHHCCCCEEEEECCCCCHHHHH T ss_conf 999747---998519999999855045--7---988988999787789--999999999845996699965999999999 Q ss_pred HHHHHCCCCEEEEECHHHHHCCCEEEEECCCCCEEEECHH Q ss_conf 6554348988999874253258189998898866334299 Q gi|254781004|r 596 REHSIKKIPIIIICGDKEASERSIGIRRFGSTTTQKVSLL 635 (652) Q Consensus 596 r~a~l~giP~~ivIG~ke~e~~~Vtir~R~~~~~~~i~le 635 (652) T Consensus 381 k~A~k~~~~~~iiiG~~E~~~~~v~lK~l~tg~q~~v~l~ 420 (421) T PRK12420 381 NYANKENIPYVLIIGEEELSTETVMLRNMKEGSEVKVPLS 420 (421) T ss_pred HHHHHCCCCEEEEECCHHHHCCEEEEEECCCCCEEEEECC T ss_conf 9998879999999876388789789998899973798288 |
|
| >TIGR00442 hisS histidyl-tRNA synthetase; InterPro: IPR015807 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=99.48 E-value=8.2e-12 Score=101.34 Aligned_cols=366 Identities=17% Similarity=0.177 Sum_probs=222.1 Q ss_pred CCCCEEEEECCHHHHHHHHHHHHHHHH-HCCCEEEECCCCCCCCCCCC-C-CCCCCCCCCCCEEECCCCCCCCCCEEEEC Q ss_conf 787435650107899999999999887-68963855543244310001-1-21001255542010014567778237743 Q gi|254781004|r 261 DGSGVIFWHRKGWKIFQTLISYMRRKI-KDDYEEINTPQVLDQHLWQQ-S-GHWDSYRANMFAVKCADDTIKDLRTFALK 337 (652) Q Consensus 261 ~~~G~~~wlP~G~~i~~~ie~~ir~~~-~~G~~eV~tP~l~~~~Lw~~-S-Gh~~~y~~~mf~~~~~~~~~~~~~~~~Lk 337 (652) T Consensus 6 ~~~G~~d~~p~~~~~~~~~~~~~~~~~~~~g~~~~~~P~~e~~~~~~~~~~~~~~~~~~~~y~-----f~d~~~~~~~lr 80 (446) T TIGR00442 6 KPRGTKDWLPGELVYRQWIEAKLRSVLESYGYSEIRTPIFEYTELFARGIGKSGDEVEKELYT-----FKDKGGRDLALR 80 (446) T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHEE-----EECCCCCEEEEC T ss_conf 345520025415789999999999999751772001211444566653025301334444301-----212788414422 Q ss_pred CCCHHHHHHHHHHCCCCH-HHCCHHHHHHEEEECCCCCCCCEEEEECCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHH Q ss_conf 431257777652012222-3104320001000127876452000105635334421010537678878999999887665 Q gi|254781004|r 338 PMNCPGHVAVFNHGLKSY-RELPVRLAEFGSVYRNEPSGSLHGLMRVRGFTQDDAHVFCTKEQMFNECLKIHNLIISIYK 416 (652) Q Consensus 338 Pmncp~h~~i~~~~~~SY-rdLPlrl~e~~~~~R~E~sg~l~GL~R~ReF~~~Dah~F~~~eq~~~e~~~~~~~~~~v~~ 416 (652) T Consensus 81 p~~t~~~~r~~~~~~~~~~~~~p~~~~~~g~~~r~e~p~--~-~gr~r~f~~~~~~~~G~~~--~~~~~~~~~~~~~~~~ 155 (446) T TIGR00442 81 PELTAPVVRLVAENKLLLPANKPLRLYYIGPVFRYERPQ--L-KGRYREFWQFGCEVIGSES--PLADAEVLSLAVEGLK 155 (446) T ss_pred CCHHHHHHHHHHHHHHHCCCCCCEEEEEEECHHHCCCHH--H-HCCHHHHHHCCEEEECCCC--CHHHHHHHHHHHHHHH T ss_conf 200368999998754310467642432320101022412--3-0101133211504643665--2036899999999898 Q ss_pred HHCCCC-CEECCCCCCCC-----CCC---------------CHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC Q ss_conf 521332-10001465311-----258---------------603577899999999985021212566752055555545 Q gi|254781004|r 417 DFGFEK-IMVKLSTRPEK-----RVG---------------SDALWDDAENIMKGVLDTIKNSSQDRINTGVLLGEGAFY 475 (652) Q Consensus 417 ~~g~~~-~~~~ls~~~~~-----~~g---------------~~~~~~~ae~~l~~~l~~~~~~~~~~~~~~~~~g~~afy 475 (652) T Consensus 156 ~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 234 (446) T TIGR00442 156 ALGLEGHFKLKLNHLGILEGILEYRGALEEDVYLTPIKDKLDKDDQERLEEELTNPLRILDEKVDELLELLKLKG-APEI 234 (446) T ss_pred HHCCCCEEEEEECCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CHHH T ss_conf 607663278874130014566665211023456656666623011567899876544321222456777763256-2257 Q ss_pred CCCCCCCHHHHCCCCCC----------CCCCC--------------HHHHCCCCCCC---------------EE---EEE Q ss_conf 54321100211033100----------12110--------------11102234674---------------16---731 Q gi|254781004|r 476 GPKFEYILKDAIGRDWQ----------CGTIQ--------------VDFNLPSRFNA---------------FY---VNS 513 (652) Q Consensus 476 gpkid~~~~d~~gr~~~----------~~tiq--------------~df~~p~~f~l---------------~y---~~~ 513 (652) T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~rGldyy~g~~~e~~~~~~~~~~~~~~GG~yd~l~~~ 314 (446) T TIGR00442 235 LDYLDELLDESEGHFEGLKDLEELFQLLEDLGIDDLYELNLGLARGLDYYTGTVFEIVTNALGAQGTVCGGGRYDNLVEE 314 (446) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHCCEEEEEECCCCCCCCCEECCCCHHHHHHH T ss_conf 88888874123578889989999999986505421022051133100111132344310112432100046510125665 Q ss_pred CCCEEEEEEEEECCCHHHHHHHHHHHHHHCC--CCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHC--CCEEEEECC-- Q ss_conf 7972137996403410378999999997387--0887337808999857966899999999999987--988999758-- Q gi|254781004|r 514 HSEKCHPVMIHRAVFGSIERFIGIMIENFKG--NLPLWLSPIQAIVTTITSSAVEYAQEIANLLKSH--HLSIETDFR-- 587 (652) Q Consensus 514 dg~~~~pvmihr~~~Gs~eR~ia~liE~~~g--~~P~wLAP~QV~Iipi~e~~~eya~~i~~~L~~~--girV~~Ddr-- 587 (652) T Consensus 315 ~~~~~~~~~---G~~~g~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 391 (446) T TIGR00442 315 FGGPPTPAV---GFAFGLERLINLLDAEKPSFPLAKVVDARVFVLVVGLGEEALPEALRLAEKLREALPGISAELYPKNN 391 (446) T ss_pred HCCCCCCCC---HHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHCCCCEEEEEECCC T ss_conf 067545410---02330899999875654310000111110257786064245789999999998733785168852211 Q ss_pred CCCCCHHHHHHHHCCCCEEEEECHHHHHCCCEEEEECCCC-CEEEECHHHHHHH Q ss_conf 9663676665543489889998742532581899988988-6633429999999 Q gi|254781004|r 588 NETINYKIREHSIKKIPIIIICGDKEASERSIGIRRFGST-TTQKVSLLDAIPI 640 (652) Q Consensus 588 ~~~~G~Kir~a~l~giP~~ivIG~ke~e~~~Vtir~R~~~-~~~~i~lee~i~~ 640 (652) T Consensus 392 ~~~~~~~~~~a~~~g~~~~~~~G~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~ 445 (446) T TIGR00442 392 GRKLKKQFSYADKLGARFAVVLGEEELKEGKVTVKDLETGFEQTTLALDELIDI 445 (446) T ss_pred CHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHC T ss_conf 001345554564348548998453100134122012231245677757877512 |
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases . Histidyl-tRNA synthetase (6.1.1.21 from EC) is an alpha2 dimer that belongs to class IIa. Every completed genome includes a histidyl-tRNA synthetase. Apparent second copies from Bacillus subtilis, Synechocystis sp., and Aquifex aeolicus are slightly shorter, more closely related to each other than to other hisS proteins, and not demonstrated to act as histidyl-tRNA synthetases (see IPR004517 from INTERPRO). The regulatory protein kinase GCN2 of Saccharomyces cerevisiae (YDR283c), and related proteins from other species designated eIF-2 alpha kinase, have a domain closely related to histidyl-tRNA synthetase that may serve to detect and respond to uncharged tRNA(his), an indicator of amino acid starvation, but these regulatory proteins are not orthologous.; GO: 0000166 nucleotide binding, 0004821 histidine-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006427 histidyl-tRNA aminoacylation, 0005737 cytoplasm. |
| >KOG4163 consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=0 Score=368.75 Aligned_cols=371 Identities=19% Similarity=0.304 Sum_probs=302.7 Q ss_pred EEEEEEEEECCHHHHHHHHHHH-HHHHHHHHHHHHHHCCEEEECCC-CCCEEEEECCHHHHHHHHHHHHHHHHHC-CCEE Q ss_conf 6899999837988999999999-97532008875411440442267-8743565010789999999999988768-9638 Q gi|254781004|r 217 LSRIYGTAWNTQQELTQYLYFL-EESEKRDHRKLAREMDLFHIAED-GSGVIFWHRKGWKIFQTLISYMRRKIKD-DYEE 293 (652) Q Consensus 217 l~Riyg~af~~~~~l~~~~~~~-eea~~rdHr~lg~~~~lf~~~~~-~~G~~~wlP~G~~i~~~ie~~ir~~~~~-G~~e 293 (652) T Consensus 54 ~~~~~gl~~~k~~df~~WY~qVitk~----------e----mieYydvsGcyilRP~s~aIWe~Iq~wfd~~ik~lGv~n 119 (551) T KOG4163 54 KATLLGLTAKKEEDFPEWYSQVITKG----------E----MIEYYDVSGCYILRPWSYAIWEAIQDWFDAEIKKLGVKN 119 (551) T ss_pred HHHHCCCCCCCCCCHHHHHHHHHHHH----------H----HHEEECCCCEEEECCHHHHHHHHHHHHHHHHHHHHCCCC T ss_conf 55421553341123178999985434----------1----100233541489553478999999999987888736434 Q ss_pred EECCCCCCCCCCCC-CCCCCCCCCCCCEEECCCCCCCCCCEEEECCCCHHHHHHHHHHCCCCHHHCCHHHHHHEEEECCC Q ss_conf 55543244310001-12100125554201001456777823774343125777765201222231043200010001278 Q gi|254781004|r 294 INTPQVLDQHLWQQ-SGHWDSYRANMFAVKCADDTIKDLRTFALKPMNCPGHVAVFNHGLKSYRELPVRLAEFGSVYRNE 372 (652) Q Consensus 294 V~tP~l~~~~Lw~~-SGh~~~y~~~mf~~~~~~~~~~~~~~~~LkPmncp~h~~i~~~~~~SYrdLPlrl~e~~~~~R~E 372 (652) T Consensus 120 cYFPmfVs~~~LEkEk~Hve~FaPEvAwVTr~-G~seLeepiaiRPTSETvmyp~yakWi~ShRDLPlkLNQW~nVvRWE 198 (551) T KOG4163 120 CYFPMFVSKSVLEKEKDHVEGFAPEVAWVTRA-GNSELEEPIAIRPTSETVMYPYYAKWIQSHRDLPLKLNQWCNVVRWE 198 (551) T ss_pred CEEEEECCHHHHHHHHHHHCCCCCCEEEEEEC-CCCCCCCCEEECCCCCCEECHHHHHHHHHHCCCCHHHHHHHHHEEEE T ss_conf 01033247888765565541578532799703-88411464223467521103888998876046754665432223530 Q ss_pred CCCCCEEEEECCCCCCCCCEE-ECCHHHHHHHHHHHHHHHHHHHHHHCCC-CCEECCCCCCCCCCCCHHHHHHHHHHHHH Q ss_conf 764520001056353344210-1053767887899999988766552133-21000146531125860357789999999 Q gi|254781004|r 373 PSGSLHGLMRVRGFTQDDAHV-FCTKEQMFNECLKIHNLIISIYKDFGFE-KIMVKLSTRPEKRVGSDALWDDAENIMKG 450 (652) Q Consensus 373 ~sg~l~GL~R~ReF~~~Dah~-F~~~eq~~~e~~~~~~~~~~v~~~~g~~-~~~~~ls~~~~~~~g~~~~~~~ae~~l~~ 450 (652) T Consensus 199 fk~p-~PFlRtrEFLWQEGHTAfat~~eA~eEvlqiLdlYa~vy~ellAiPVvkGrK-se~EkFaGgd~----------- 265 (551) T KOG4163 199 FKHP-QPFLRTREFLWQEGHTAFATPEEAEEEVLQILDLYARVYEELLAIPVVKGRK-SEKEKFAGGDY----------- 265 (551) T ss_pred CCCC-CCCHHHHHHHHHCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC-CHHHHCCCCCC----------- T ss_conf 2489-7512355777745730107976778999999999999987620343014763-45330257750----------- Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCC-CHHHHCCCCCCCEEEEE-CCCEEEEEEEEECCC Q ss_conf 9985021212566752055555545543211002110331001211-01110223467416731-797213799640341 Q gi|254781004|r 451 VLDTIKNSSQDRINTGVLLGEGAFYGPKFEYILKDAIGRDWQCGTI-QVDFNLPSRFNAFYVNS-HSEKCHPVMIHRAVF 528 (652) Q Consensus 451 ~l~~~~~~~~~~~~~~~~~g~~afygpkid~~~~d~~gr~~~~~ti-q~df~~p~~f~l~y~~~-dg~~~~pvmihr~~~ 528 (652) T Consensus 266 ---------TttvE-----------------a~i~~~GrgiQgaTSH~LGQNFSkmF~i~~ed~~~g~~~fv~---QnSW 316 (551) T KOG4163 266 ---------TTTVE-----------------AFIPCSGRGIQGATSHHLGQNFSKMFEIVFEDPGEGEKEFVW---QNSW 316 (551) T ss_pred ---------EEEEE-----------------EEECCCCCCCCCCCHHHHHHHHHHHHCEEECCCCCCCHHHEE---ECCC T ss_conf ---------47776-----------------652466655554320256677998623441588741122033---1255 Q ss_pred HHHHHHHHHHHHHHC----CCCCCCCCCEEEEEEECC----------HHHHHHHHHHHHHHHHCCCEEEEECCCC-CCCH Q ss_conf 037899999999738----708873378089998579----------6689999999999998798899975896-6367 Q gi|254781004|r 529 GSIERFIGIMIENFK----GNLPLWLSPIQAIVTTIT----------SSAVEYAQEIANLLKSHHLSIETDFRNE-TINY 593 (652) Q Consensus 529 Gs~eR~ia~liE~~~----g~~P~wLAP~QV~Iipi~----------e~~~eya~~i~~~L~~~girV~~Ddr~~-~~G~ 593 (652) T Consensus 317 g~sTRtiGvmiM~HgDdkGLvLPPrVA~vQvVvvP~git~~~s~~~~~~l~~a~~~v~~~L~~~giR~~~D~rDnytpGw 396 (551) T KOG4163 317 GLSTRTIGVMIMTHGDDKGLVLPPRVAPVQVVVVPVGITDATSEEDKQELLDACSAVESRLLGAGIRAEADLRDNYTPGW 396 (551) T ss_pred CCCCCEEEEEEEEECCCCCCCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCC T ss_conf 53421134799983178653048752413799995663566746778999999999999985168167503434678885 Q ss_pred HHHHHHHCCCCEEEEECHHHHHCCCEEEEECCCCCEEEECHHHHHHHHHHH Q ss_conf 666554348988999874253258189998898866334299999999873 Q gi|254781004|r 594 KIREHSIKKIPIIIICGDKEASERSIGIRRFGSTTTQKVSLLDAIPILTKE 644 (652) Q Consensus 594 Kir~a~l~giP~~ivIG~ke~e~~~Vtir~R~~~~~~~i~lee~i~~l~~e 644 (652) T Consensus 397 KfnhwElkGVPlRiEiGPrD~~~~qv~~VrRd~~~K~~v~~~~l~~~v~el 447 (551) T KOG4163 397 KFNHWELKGVPLRIEIGPRDLASNQVVAVRRDTGEKKDVSLGDLEKTVKEL 447 (551) T ss_pred CCCCEEECCCEEEEEECCCHHHHCEEEEEECCCCCCCCCCHHHHHHHHHHH T ss_conf 333004327416887563302008389998357753455778899999999 |
|
| >KOG1936 consensus | Back alignment and domain information |
|---|
Probab=99.60 E-value=7e-13 Score=108.73 Aligned_cols=390 Identities=15% Similarity=0.219 Sum_probs=228.4 Q ss_pred EECCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEE---ECCCCCCEEEEECCHHHHHHHHHHHHHHHHH-CCCEEEECCCC Q ss_conf 8379889999999999753200887541144044---2267874356501078999999999998876-89638555432 Q gi|254781004|r 224 AWNTQQELTQYLYFLEESEKRDHRKLAREMDLFH---IAEDGSGVIFWHRKGWKIFQTLISYMRRKIK-DDYEEINTPQV 299 (652) Q Consensus 224 af~~~~~l~~~~~~~eea~~rdHr~lg~~~~lf~---~~~~~~G~~~wlP~G~~i~~~ie~~ir~~~~-~G~~eV~tP~l 299 (652) T Consensus 26 ~~a~~~~~~~~va~~~~~~~~~----~~~~~~~~~k~~lKtPKGTrD~~p~qm~lRe~if~~i~~vFkrhGa~~iDTPVF 101 (518) T KOG1936 26 SCASPEQISEEVALILALKNGL----GRSGSIFKKKFSLKTPKGTRDFSPEQMALREKIFSTIKEVFKRHGAETIDTPVF 101 (518) T ss_pred CCCCHHHHHHHHHHHHHHHCCC----CCCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEECCCCCH T ss_conf 4588667528999999874136----777777676232069998776888888999999999999999719744466004 Q ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCEEEECC-CCHHHHHHHHHHCCCCHHHCCHHHHHHEEEECCCCCCCCE Q ss_conf 443100011210012555420100145677782377434-3125777765201222231043200010001278764520 Q gi|254781004|r 300 LDQHLWQQSGHWDSYRANMFAVKCADDTIKDLRTFALKP-MNCPGHVAVFNHGLKSYRELPVRLAEFGSVYRNEPSGSLH 378 (652) Q Consensus 300 ~~~~Lw~~SGh~~~y~~~mf~~~~~~~~~~~~~~~~LkP-mncp~h~~i~~~~~~SYrdLPlrl~e~~~~~R~E~sg~l~ 378 (652) T Consensus 102 ElkeiL~-----gKYGEds--kLiYdlkDQGGEl~SLRYDLTVPfARylAmNki~s-----ikRy~iAkVyRRd~-P~m- 167 (518) T KOG1936 102 ELKEILT-----GKYGEDS--KLIYDLKDQGGELCSLRYDLTVPFARYLAMNKITS-----IKRYHIAKVYRRDQ-PAM- 167 (518) T ss_pred HHHHHHH-----HHCCCCC--CEEEEHHHCCCCEEEEECCCCCHHHHHHHHCCCCC-----CEEEEEEEEEECCC-CHH- T ss_conf 5999986-----6405532--30675232488588741356647999998714552-----11046787875068-144- Q ss_pred EEEECCCCCCCCCEEECCHHHH--HHHHHHHHHHHHHHHHHHCCCCCEECCCCCCC------------CCCC-------- Q ss_conf 0010563533442101053767--88789999998876655213321000146531------------1258-------- Q gi|254781004|r 379 GLMRVRGFTQDDAHVFCTKEQM--FNECLKIHNLIISIYKDFGFEKIMVKLSTRPE------------KRVG-------- 436 (652) Q Consensus 379 GL~R~ReF~~~Dah~F~~~eq~--~~e~~~~~~~~~~v~~~~g~~~~~~~ls~~~~------------~~~g-------- 436 (652) T Consensus 168 trGR~REFYQcDFDIAG~~d~M~pdaE---~lkiv~e~L~~l~Igd~~iKvNhRkiLdgmf~v~GVp~~~frtICSsIDK 244 (518) T KOG1936 168 TRGRYREFYQCDFDIAGQFDPMIPDAE---CLKIVVEILSRLGIGDYGIKVNHRKILDGMFAVCGVPEDKFRTICSSIDK 244 (518) T ss_pred HCHHHHHHHCCCCCCCCCCCCCCCHHH---HHHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHCCCHHHHHHHHHHHHH T ss_conf 230245565067521266777786099---99999999865275515997147899998998809997896248776545 Q ss_pred -CHHHHHHHHH-----------H---H---------HHHHHHHCCCCCCCCCCCCCCCCCCC--------------CCCC Q ss_conf -6035778999-----------9---9---------99998502121256675205555554--------------5543 Q gi|254781004|r 437 -SDALWDDAEN-----------I---M---------KGVLDTIKNSSQDRINTGVLLGEGAF--------------YGPK 478 (652) Q Consensus 437 -~~~~~~~ae~-----------~---l---------~~~l~~~~~~~~~~~~~~~~~g~~af--------------ygpk 478 (652) T Consensus 245 LdK~pwedVkkEmv~eKGlsee~ad~igeyv~~~g~~eL~e~l~~d~~--l-~~n~~a~eal~dlk~Lf~y~~~fg~s~~ 321 (518) T KOG1936 245 LDKMPWEDVKKEMVFEKGLSEEAADRIGEYVSLKGLDELLEKLIADPK--L-SQNEAAKEALADLKQLFEYLEIFGISER 321 (518) T ss_pred HHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHCCCC--C-CCCHHHHHHHHHHHHHHHHHHHCCCCCE T ss_conf 503889999999877417899999999878621668889999854875--4-3338899989999999999997298633 Q ss_pred CCCCHHHHCCCCCCCCCCCHHHH---------------CC------------CCCCCEEE--EECCCEEEEEEEEECCCH Q ss_conf 21100211033100121101110---------------22------------34674167--317972137996403410 Q gi|254781004|r 479 FEYILKDAIGRDWQCGTIQVDFN---------------LP------------SRFNAFYV--NSHSEKCHPVMIHRAVFG 529 (652) Q Consensus 479 id~~~~d~~gr~~~~~tiq~df~---------------~p------------~~f~l~y~--~~dg~~~~pvmihr~~~G 529 (652) T Consensus 322 isfDlSLARGLDYYTGvIyEav~~~~~~~~~a~~~~~~~~~e~~~vGSvaaGGRYDnLv~mf~~k~~~-v------PcvG 394 (518) T KOG1936 322 ISFDLSLARGLDYYTGVIYEAVLRGLRLICPAGRYDQAGSTEPGGVGSVAAGGRYDNLVGMFDKKGDK-V------PCVG 394 (518) T ss_pred EEEEHHHHCCCHHHHCEEEEEEECCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCC-C------CCCC T ss_conf 78525875340133123445652254235761122203665677754512476323689875124574-8------7454 Q ss_pred ---HHHHHHHHHHHHHCC-CCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHCCCEEEEECC-CCCCCHHHHHHHHCCCC Q ss_conf ---378999999997387-0887337808999857966899999999999987988999758-96636766655434898 Q gi|254781004|r 530 ---SIERFIGIMIENFKG-NLPLWLSPIQAIVTTITSSAVEYAQEIANLLKSHHLSIETDFR-NETINYKIREHSIKKIP 604 (652) Q Consensus 530 ---s~eR~ia~liE~~~g-~~P~wLAP~QV~Iipi~e~~~eya~~i~~~L~~~girV~~Ddr-~~~~G~Kir~a~l~giP 604 (652) T Consensus 395 ~S~GVeRiFsile~r~~~~~~~iR~t~t~V~V~~~~k~~l~eR~k~v~~Lw~agI~aE~~yk~~~~~~~q~~~~e~~~ip 474 (518) T KOG1936 395 QSVGVERIFSILEQRAATVATKIRTTETQVYVAAAGKNLLFERLKVVNALWDAGIKAEYLYKANPKLLKQFQYAEEAGIP 474 (518) T ss_pred EEEHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHCCCCHHHHHHCCCCHHHHHHHHHHCCCC T ss_conf 04007689999999887654102567628999836774089999999999863755200010484377888788863997 Q ss_pred EEEEECHHHHHCCCEEEEECCCCCEEEECHHHHHHHHHHH Q ss_conf 8999874253258189998898866334299999999873 Q gi|254781004|r 605 IIIICGDKEASERSIGIRRFGSTTTQKVSLLDAIPILTKE 644 (652) Q Consensus 605 ~~ivIG~ke~e~~~Vtir~R~~~~~~~i~lee~i~~l~~e 644 (652) T Consensus 475 ~~vi~Ge~El~~G~V~vk~~~~re~~~v~~e~~v~~l~~~ 514 (518) T KOG1936 475 LAVILGEEELADGSVKVKNVGTREEVLVKREQFVSELKDL 514 (518) T ss_pred EEEEECHHHHCCCEEEEEECCCCCCEECCHHHHHHHHHHH T ss_conf 6999344565077079876145533103399999999877 |
|
| >cd00670 Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_tRNA synthetase class II core domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-40 Score=298.82 Aligned_cols=232 Identities=25% Similarity=0.347 Sum_probs=177.1 Q ss_pred HHHHHHHHHHHHHHHH-HCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCEEEECCCCHHHHHHHHHH Q ss_conf 7899999999999887-689638555432443100011210012555420100145677782377434312577776520 Q gi|254781004|r 272 GWKIFQTLISYMRRKI-KDDYEEINTPQVLDQHLWQQSGHWDSYRANMFAVKCADDTIKDLRTFALKPMNCPGHVAVFNH 350 (652) Q Consensus 272 G~~i~~~ie~~ir~~~-~~G~~eV~tP~l~~~~Lw~~SGh~~~y~~~mf~~~~~~~~~~~~~~~~LkPmncp~h~~i~~~ 350 (652) T Consensus 1 Ga~L~~aL~~~~~~~~~~~G~~~v~~P~l~~~~~~~~sg~~~~f~~~~y~v~~~-~~~~~~~~~~L~PTsE~~~~~~~~~ 79 (235) T cd00670 1 GTALWRALERFLDDRMAEYGYQEILFPFLAPTVLFFKGGHLDGYRKEMYTFEDK-GRELRDTDLVLRPAACEPIYQIFSG 79 (235) T ss_pred CHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHCCCCCCCCCCEEEEECC-CCCCCCCCEEEEECCCHHHHHHHHC T ss_conf 988999999999999998699899898557899992238675452052898237-7666787389930786999999948 Q ss_pred CCCCHHHCCHHHHHHEEEECCCCCCCCEEEEECCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCC Q ss_conf 12222310432000100012787645200010563533442101053767887899999988766552133210001465 Q gi|254781004|r 351 GLKSYRELPVRLAEFGSVYRNEPSGSLHGLMRVRGFTQDDAHVFCTKEQMFNECLKIHNLIISIYKDFGFEKIMVKLSTR 430 (652) Q Consensus 351 ~~~SYrdLPlrl~e~~~~~R~E~sg~l~GL~R~ReF~~~Dah~F~~~eq~~~e~~~~~~~~~~v~~~~g~~~~~~~ls~~ 430 (652) T Consensus 80 ~i~s~~dLPlr~~~~s~~fR~E~~~-~~Gl~Rv~eF~k~E~~~~~~~e~~~~~~~~~~~~~~~i~~~L~l~y~v~-~~~~ 157 (235) T cd00670 80 EILSYRALPLRLDQIGPCFRHEPSG-RRGLMRVREFRQVEYVVFGEPEEAEEERREWLELAEEIARELGLPVRVV-VADD 157 (235) T ss_pred CCCCHHHCCEEEEEECCEECCCCCC-CCCCEEEEEEEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHCCCCEEEE-ECCC T ss_conf 3287687995454456533367899-9998367899985079996889999999999999999999869977999-7586 Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHC-CCCCCCCCCC-HHHHCCCCCCC Q ss_conf 311258603577899999999985021212566752055555545543211002110-3310012110-11102234674 Q gi|254781004|r 431 PEKRVGSDALWDDAENIMKGVLDTIKNSSQDRINTGVLLGEGAFYGPKFEYILKDAI-GRDWQCGTIQ-VDFNLPSRFNA 508 (652) Q Consensus 431 ~~~~~g~~~~~~~ae~~l~~~l~~~~~~~~~~~~~~~~~g~~afygpkid~~~~d~~-gr~~~~~tiq-~df~~p~~f~l 508 (652) T Consensus 158 ~d~g~~~~~~--~--------------------------~~~a--~~~~d~E~~~p~~~~~~e~~s~S~~~~~q~r~~~~ 207 (235) T cd00670 158 PFFGRGGKRG--L--------------------------DAGR--ETVVEFELLLPLPGRAKETAVGSANVHLDHFGASF 207 (235) T ss_pred CCCCCCCCCC--C--------------------------CCCC--CCCEEEEEEECCCCCEEEEEEEEECCCHHHCCCCC T ss_conf 1337664100--0--------------------------2565--55646999977899467899930257844430253 Q ss_pred EEEEECCCEEEEEEEEECCCHHHHHHHHHHH Q ss_conf 1673179721379964034103789999999 Q gi|254781004|r 509 FYVNSHSEKCHPVMIHRAVFGSIERFIGIMI 539 (652) Q Consensus 509 ~y~~~dg~~~~pvmihr~~~Gs~eR~ia~li 539 (652) T Consensus 208 ~~~~~~~~~~ht~---~~s~~a~~R~l~All 235 (235) T cd00670 208 KIDEDGGGRAHTG---CGGAGGEERLVLALL 235 (235) T ss_pred EEECCCCCEEEEE---CCCCCHHHHHHHHHC T ss_conf 0146999689997---263288999999869 |
This domain is the core catalytic domain of tRNA synthetases of the subgroup containing glycyl, histidyl, prolyl, seryl and threonyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. These enzymes belong to class II aminoacyl-tRNA synthetases (aaRS) based upon their structure and the presence of three characteristic sequence motifs in the core domain. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ and the accessory subunit of mitochondrial polymerase gamma (Pol gamma b) . Most class II tRNA synthetases are dimers, with this subgroup consisting of mostly homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. |
| >cd00768 class_II_aaRS-like_core Class II tRNA amino-acyl synthetase-like catalytic core domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-38 Score=283.87 Aligned_cols=209 Identities=26% Similarity=0.367 Sum_probs=176.1 Q ss_pred HHHHHHHHHHHHHH-CCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCEEEECCCCHHHHHHHHHHCCC Q ss_conf 99999999998876-89638555432443100011210012555420100145677782377434312577776520122 Q gi|254781004|r 275 IFQTLISYMRRKIK-DDYEEINTPQVLDQHLWQQSGHWDSYRANMFAVKCADDTIKDLRTFALKPMNCPGHVAVFNHGLK 353 (652) Q Consensus 275 i~~~ie~~ir~~~~-~G~~eV~tP~l~~~~Lw~~SGh~~~y~~~mf~~~~~~~~~~~~~~~~LkPmncp~h~~i~~~~~~ 353 (652) T Consensus 1 ~r~~ie~~~r~~~~~~G~~ev~~P~l~~~~~~~~sg~~~~~~~~~--------~~~~~~~~~L~pt~e~~~~~~~~~~~- 71 (211) T cd00768 1 IRSKIEQKLRRFMAELGFQEVETPIVEREPLLEKAGHEPKDLLPV--------GAENEEDLYLRPTLEPGLVRLFVSHI- 71 (211) T ss_pred CHHHHHHHHHHHHHHCCCEEEECCEECCHHHHHHCCCCHHHHHHH--------CCCCCCEEEEECCCCHHHHHHHHHHH- T ss_conf 978999999999998699899998342799997506762223011--------04679769995168499999975247- Q ss_pred CHHHCCHHHHHHEEEECCCCCCCCEEEEECCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCC Q ss_conf 22310432000100012787645200010563533442101053767887899999988766552133210001465311 Q gi|254781004|r 354 SYRELPVRLAEFGSVYRNEPSGSLHGLMRVRGFTQDDAHVFCTKEQMFNECLKIHNLIISIYKDFGFEKIMVKLSTRPEK 433 (652) Q Consensus 354 SYrdLPlrl~e~~~~~R~E~sg~l~GL~R~ReF~~~Dah~F~~~eq~~~e~~~~~~~~~~v~~~~g~~~~~~~ls~~~~~ 433 (652) T Consensus 72 --~dLP~r~~~~~~~fR~E~~~--~Gl~RvreF~~~e~~~f~~~~~~~~~~~~~~~~~~~i~~~lgl~~~~~~~~~~~-- 145 (211) T cd00768 72 --RKLPLRLAEIGPAFRNEGGR--RGLRRVREFTQLEGEVFGEDGEEASEFEELIELTEELLRALGIKLDIVFVEKTP-- 145 (211) T ss_pred --HHCCHHHHEECCEECCCCCC--CCCCCCCCEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECC-- T ss_conf --65777864320056057888--884460468898479998848889999999999999999749988869999778-- Q ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCHHHH-CCCCCCCEEEE Q ss_conf 25860357789999999998502121256675205555554554321100211033100121101110-22346741673 Q gi|254781004|r 434 RVGSDALWDDAENIMKGVLDTIKNSSQDRINTGVLLGEGAFYGPKFEYILKDAIGRDWQCGTIQVDFN-LPSRFNAFYVN 512 (652) Q Consensus 434 ~~g~~~~~~~ae~~l~~~l~~~~~~~~~~~~~~~~~g~~afygpkid~~~~d~~gr~~~~~tiq~df~-~p~~f~l~y~~ 512 (652) T Consensus 146 ----------------------------------~~~~~~~a~~~~Die~~~p~~~~~Ev~s~~~~~d~qsr~~~i~y~~ 191 (211) T cd00768 146 ----------------------------------GEFSPGGAGPGFEIEVDHPEGRGLEIGSGGYRQDEQARAADLYFLD 191 (211) T ss_pred ----------------------------------CCCCCCCCEEEEEEEEECCCCCEEEEECEECCCCHHHHHCCCEEEC T ss_conf ----------------------------------6766645235455789837897999935461677878846989999 Q ss_pred ECCCEEEEEEEEECCCHHHHHH Q ss_conf 1797213799640341037899 Q gi|254781004|r 513 SHSEKCHPVMIHRAVFGSIERF 534 (652) Q Consensus 513 ~dg~~~~pvmihr~~~Gs~eR~ 534 (652) T Consensus 192 ~dg~~~~~~~~~~gl--~v~Rl 211 (211) T cd00768 192 EALEYRYPPTIGFGL--GLERL 211 (211) T ss_pred CCCCEEEEEEEECEE--CCCCC T ss_conf 999998755630324--13669 |
Class II amino acyl-tRNA synthetases (aaRS) share a common fold and generally attach an amino acid to the 3' OH of ribose of the appropriate tRNA. PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. These enzymes are usually homodimers. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. The substrate specificity of this reaction is further determined by additional domains. Intererestingly, this domain is also found is asparagine synthase A (AsnA), in the accessory subunit of mitochondrial polymerase gamma and in the bacterial ATP phosphoribosyltransferase regulatory subunit HisZ. |
| >pfam00587 tRNA-synt_2b tRNA synthetase class II core domain (G, H, P, S and T) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-34 Score=256.64 Aligned_cols=162 Identities=33% Similarity=0.574 Sum_probs=144.3 Q ss_pred HHHHHHHHHHHHH-HCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCEEEECCCCHHHHHHHHHHCCC Q ss_conf 9999999999887-689638555432443100011210012555420100145677782377434312577776520122 Q gi|254781004|r 275 IFQTLISYMRRKI-KDDYEEINTPQVLDQHLWQQSGHWDSYRANMFAVKCADDTIKDLRTFALKPMNCPGHVAVFNHGLK 353 (652) Q Consensus 275 i~~~ie~~ir~~~-~~G~~eV~tP~l~~~~Lw~~SGh~~~y~~~mf~~~~~~~~~~~~~~~~LkPmncp~h~~i~~~~~~ 353 (652) T Consensus 1 l~~~l~~~~~~~~~~~G~~~i~tP~l~~~~~~~~sg~~~~~~~~my~~~-----d~~~~~l~Lrp~~~~~~~~~~~~~~~ 75 (170) T pfam00587 1 LRNALENFIRDLFKRYGYQEVDTPILEPKELWEGSGHWDDYFDEMYRFK-----DRGGEELYLRPTAEVGITRLFKNEIL 75 (170) T ss_pred CHHHHHHHHHHHHHHCCCEEEECCEEEEHHHHHHCCCCCCCHHHEEEEE-----CCCCCEEEEECCCCHHHHHHHHHHCC T ss_conf 9799999999999985998999991756789834477655753125673-----58997688732574588899886200 Q ss_pred CHHHCCHHHHHHEEEECCCCCCCCEEEEECCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCC- Q ss_conf 2231043200010001278764520001056353344210105376788789999998876655213321000146531- Q gi|254781004|r 354 SYRELPVRLAEFGSVYRNEPSGSLHGLMRVRGFTQDDAHVFCTKEQMFNECLKIHNLIISIYKDFGFEKIMVKLSTRPE- 432 (652) Q Consensus 354 SYrdLPlrl~e~~~~~R~E~sg~l~GL~R~ReF~~~Dah~F~~~eq~~~e~~~~~~~~~~v~~~~g~~~~~~~ls~~~~- 432 (652) T Consensus 76 ~~~~lP~r~~~~~~~fR~E~~~-~~Gl~R~reF~q~d~~~~~~~e~s~~~~~e~~~~~~~~~~~lgl~-~~i~~~~~g~l 153 (170) T pfam00587 76 SYRDLPLKLYQIGPCFRYEARP-RRGLGRVREFTQVDAEIFGTPEQSEEEDEELLKLAEEILQDLGLP-YRVVLNTRGDL 153 (170) T ss_pred CCCCCCCEEECCCCCCCCCCCC-CCCCCEEEEEEEECEEEEECCCHHHHHHHHHHHHHHHHHHHCCCC-EEEEECCCCCC T ss_conf 3235860133065300677776-667743678898047999670042999999999999999987996-79997267778 Q ss_pred ----CCCCCHHHHHH Q ss_conf ----12586035778 Q gi|254781004|r 433 ----KRVGSDALWDD 443 (652) Q Consensus 433 ----~~~g~~~~~~~ 443 (652) T Consensus 154 ~~~~~~~~d~E~w~~ 168 (170) T pfam00587 154 GGYASKTGDLEAWLP 168 (170) T ss_pred CCHHHHCCCCCEECC T ss_conf 986786078520578 |
Other tRNA synthetase sub-families are too dissimilar to be included. This domain is the core catalytic domain of tRNA synthetases and includes glycyl, histidyl, prolyl, seryl and threonyl tRNA synthetases. |
| >cd00774 GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-like class II core catalytic domain | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.8e-19 Score=151.93 Aligned_cols=154 Identities=23% Similarity=0.300 Sum_probs=129.3 Q ss_pred CCCEEEEECCHHHHHHHHHHHHHHHH--HC-CCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCEEEECC Q ss_conf 87435650107899999999999887--68-9638555432443100011210012555420100145677782377434 Q gi|254781004|r 262 GSGVIFWHRKGWKIFQTLISYMRRKI--KD-DYEEINTPQVLDQHLWQQSGHWDSYRANMFAVKCADDTIKDLRTFALKP 338 (652) Q Consensus 262 ~~G~~~wlP~G~~i~~~ie~~ir~~~--~~-G~~eV~tP~l~~~~Lw~~SGh~~~y~~~mf~~~~~~~~~~~~~~~~LkP 338 (652) T Consensus 21 ~ag~yDyGPlG~~LK~Ni~~~W~~~fv~~~~~~~~id~~ii~p~L--------------mF~T~i-G~~~~~~~~~yLRP 85 (254) T cd00774 21 VAGFYDYGPLGVELKNNIKSAWRKSFVLEEEDMLEIDSPIITPEL--------------MFKTSI-GPVESGGNLGYLRP 85 (254) T ss_pred HHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCC--------------CEECCC-CCCCCCCCCEEECH T ss_conf 310615482379999999999999987437987995410036632--------------200121-56558986035363 Q ss_pred CCHHHHHHHHHHCCCCHH-HCCHHHHHHEEEECCCCCCCCEEEEECCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHH Q ss_conf 312577776520122223-1043200010001278764520001056353344210105376788789999998876655 Q gi|254781004|r 339 MNCPGHVAVFNHGLKSYR-ELPVRLAEFGSVYRNEPSGSLHGLMRVRGFTQDDAHVFCTKEQMFNECLKIHNLIISIYKD 417 (652) Q Consensus 339 mncp~h~~i~~~~~~SYr-dLPlrl~e~~~~~R~E~sg~l~GL~R~ReF~~~Dah~F~~~eq~~~e~~~~~~~~~~v~~~ 417 (652) T Consensus 86 ETAQGifvnFk~~~~~~r~kLPFGiaQIGk~FRNEIsP-r~~l~R~REF~q~EiE~F~~P~~~~~~~~~w~~~~l~~~~~ 164 (254) T cd00774 86 ETAQGIFVNFKNLLEFNRRKLPFGVAQIGKSFRNEISP-RNGLFRVREFTQAEIEFFVDPEKSHPWFDYWADQRLKWLPK 164 (254) T ss_pred HHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCC-CCCCCCHHCHHHHEEEEEECCCCCHHHHHHHHHHHHHHHHH T ss_conf 45347798789999964888884456542022673477-76754000002125788857986425789999999866387 Q ss_pred HCCCCCEECCCCCC Q ss_conf 21332100014653 Q gi|254781004|r 418 FGFEKIMVKLSTRP 431 (652) Q Consensus 418 ~g~~~~~~~ls~~~ 431 (652) T Consensus 165 ~~~~~~~~~~~~~~ 178 (254) T cd00774 165 FAQSPENLRLTDHE 178 (254) T ss_pred HCCCCCCEEEECCC T ss_conf 38996653673046 |
GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes. It is responsible for the attachment of glycine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP binding and hydrolysis. This alignment contains only sequences from the GlyRS form which homodimerizes. The heterotetramer glyQ is in a different family of class II aaRS. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the N-terminus of the accessory subunit of mitochondrial polymerase gamma (Pol gamma b). Pol gamma b stimulates processive DNA synthesis and is functional as a homodimer, which can associate with the catalytic subunit Pol gamma alpha to form a heterotrimer. Despite significant both structural and sequence similarity with Gly |
| >PRK12421 ATP phosphoribosyltransferase regulatory subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=8.2e-08 Score=73.75 Aligned_cols=152 Identities=18% Similarity=0.185 Sum_probs=114.0 Q ss_pred CCEEEEECCHHHHHHHHHHHHHHHH-HCCCEEEECCCCCCCCCCCC-CCCCCCCCCCCCEEECCCCCCC-CCCEEEECCC Q ss_conf 7435650107899999999999887-68963855543244310001-1210012555420100145677-7823774343 Q gi|254781004|r 263 SGVIFWHRKGWKIFQTLISYMRRKI-KDDYEEINTPQVLDQHLWQQ-SGHWDSYRANMFAVKCADDTIK-DLRTFALKPM 339 (652) Q Consensus 263 ~G~~~wlP~G~~i~~~ie~~ir~~~-~~G~~eV~tP~l~~~~Lw~~-SGh~~~y~~~mf~~~~~~~~~~-~~~~~~LkPm 339 (652) T Consensus 11 ~G~~D~lP~ea~~~~~l~~~l~~~f~~~Gy~~V~tP~lE~~e~l~~~~g~--~~~~~~f~~~-----D~~sGr~l~LRpD 83 (391) T PRK12421 11 DGVADLLPEEAQKIERLRRRLLDLFASRGYQLVMPPFIEYLESLLTGAGQ--DLDLQTFKLI-----DQLSGRLMGVRAD 83 (391) T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHCCCCCC--CCCEEEEEEE-----ECCCCCEEEECCC T ss_conf 99875899999999999999999999869976216760728785656687--3414799996-----1799978655653 Q ss_pred CHHHHHHHHHHCCCCHHHCCHHHHHHEEEECCCCCCCCEEEEECCCCCCCCCEEECCHH-HHHHHHHHHHHHHHHHHHHH Q ss_conf 12577776520122223104320001000127876452000105635334421010537-67887899999988766552 Q gi|254781004|r 340 NCPGHVAVFNHGLKSYRELPVRLAEFGSVYRNEPSGSLHGLMRVRGFTQDDAHVFCTKE-QMFNECLKIHNLIISIYKDF 418 (652) Q Consensus 340 ncp~h~~i~~~~~~SYrdLPlrl~e~~~~~R~E~sg~l~GL~R~ReF~~~Dah~F~~~e-q~~~e~~~~~~~~~~v~~~~ 418 (652) T Consensus 84 ~T~~vARi~a~~--~~~~~p~Rl~Y~G~V~R~~~~----~~gr~Ref~Q~G~EliG~~~~~aD---~EvI~l~~~~L~~l 154 (391) T PRK12421 84 ITPQVARIDAHL--LNREGVARYCYAGSVLHTLPQ----GLNASRAPLQLGAELYGHAGIEAD---IEIIDLMLGLLRNA 154 (391) T ss_pred CCHHHHHHHHHH--CCCCCCEEEEEECEEEECCCC----CCCCCCCCEECCEEEECCCCHHHH---HHHHHHHHHHHHHC T ss_conf 206889999874--046886579996517751688----888766521505898569987989---99999999999976 Q ss_pred CCCCCEECCCCC Q ss_conf 133210001465 Q gi|254781004|r 419 GFEKIMVKLSTR 430 (652) Q Consensus 419 g~~~~~~~ls~~ 430 (652) T Consensus 155 Gl~~~~l~lgh~ 166 (391) T PRK12421 155 GVEGLHLDLGHV 166 (391) T ss_pred CCCCEEEEECCH T ss_conf 998069996874 |
|
| >cd00773 HisRS-like_core Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain | Back alignment and domain information |
|---|
Probab=98.96 E-value=6.4e-09 Score=81.41 Aligned_cols=144 Identities=25% Similarity=0.348 Sum_probs=107.9 Q ss_pred HHHHHHHHHHHHHHH-HCCCEEEECCCCCCCCCCCC-CCCCCCCCCCCCEEECCCCCCCCCCEEEECCCCHHHHHHHHHH Q ss_conf 899999999999887-68963855543244310001-1210012555420100145677782377434312577776520 Q gi|254781004|r 273 WKIFQTLISYMRRKI-KDDYEEINTPQVLDQHLWQQ-SGHWDSYRANMFAVKCADDTIKDLRTFALKPMNCPGHVAVFNH 350 (652) Q Consensus 273 ~~i~~~ie~~ir~~~-~~G~~eV~tP~l~~~~Lw~~-SGh~~~y~~~mf~~~~~~~~~~~~~~~~LkPmncp~h~~i~~~ 350 (652) T Consensus 2 ~~~r~~i~~~l~~~f~~~Gy~~I~~P~lE~~d~~~~~~~--~~~~~~~~~f~-----D~~g~~l~LRpD~T~~iaR~~~~ 74 (261) T cd00773 2 AALRRYIEDTLREVFERYGYEEIDTPVFEYTELFLRKSG--DEVSKEMYRFK-----DKGGRDLALRPDLTAPVARAVAE 74 (261) T ss_pred HHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHCCCCC--CCCHHCEEEEE-----CCCCCEEEECCCCCHHHHHHHHH T ss_conf 689999999999999986997866776452767524465--31021169999-----79999897678662799999997 Q ss_pred CCCCHHHCCHHHHHHEEEECCCCCCCCEEEEECCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCC Q ss_conf 12222310432000100012787645200010563533442101053767887899999988766552133210001465 Q gi|254781004|r 351 GLKSYRELPVRLAEFGSVYRNEPSGSLHGLMRVRGFTQDDAHVFCTKEQMFNECLKIHNLIISIYKDFGFEKIMVKLSTR 430 (652) Q Consensus 351 ~~~SYrdLPlrl~e~~~~~R~E~sg~l~GL~R~ReF~~~Dah~F~~~eq~~~e~~~~~~~~~~v~~~~g~~~~~~~ls~~ 430 (652) T Consensus 75 ~~~~-~~~p~r~~Y~g~VfR~~~~~----~g~~rE~~Q~G~EiiG~~~~--~ad~Eii~l~~~~l~~lg~~~~~i~i~~~ 147 (261) T cd00773 75 NLLS-LPLPLKLYYIGPVFRYERPQ----KGRYREFYQVGVEIIGSDSP--LADAEVIALAVEILEALGLKDFQIKINHR 147 (261) T ss_pred HHCC-CCCCEEEEEECCEEEECCCC----CCCCCCCCCEEEEEECCCCH--HHHHHHHHHHHHHHHHCCCCCEEEEEECH T ss_conf 4153-78885899973189976899----99844322146999728975--88999999999999976998649998088 |
HisRS is a homodimer. It is responsible for the attachment of histidine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ. HisZ along with HisG catalyze the first reaction in histidine biosynthesis. HisZ is found only in a subset of bacteria and differs from HisRS in lacking a C-terminal anti-codon binding domain. |
| >PRK12293 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.1e-08 Score=79.72 Aligned_cols=139 Identities=15% Similarity=0.195 Sum_probs=107.1 Q ss_pred CCCCCCEEEEECCHHHHHHHHHHHHHHHH-HCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCEEEEC Q ss_conf 26787435650107899999999999887-68963855543244310001121001255542010014567778237743 Q gi|254781004|r 259 AEDGSGVIFWHRKGWKIFQTLISYMRRKI-KDDYEEINTPQVLDQHLWQQSGHWDSYRANMFAVKCADDTIKDLRTFALK 337 (652) Q Consensus 259 ~~~~~G~~~wlP~G~~i~~~ie~~ir~~~-~~G~~eV~tP~l~~~~Lw~~SGh~~~y~~~mf~~~~~~~~~~~~~~~~Lk 337 (652) T Consensus 5 ~~lP~GtrD~~p~~~~~~~~Ie~~~~~~f~~~Gy~eI~TP~~E~~e---~~~--~~~~kemy~f-----~D~~gr~l~LR 74 (281) T PRK12293 5 HEIPQGSRLYFGKSAKLKRDIENVASEILYKEGFEEIVTPSFSYHQ---HLS--VADEKELLRF-----SDEKNHEISLR 74 (281) T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEECCCEEEEE---CCC--CCCCCEEEEE-----ECCCCCEEEEC T ss_conf 7899978166819999999999999999998599485378568644---346--6563017999-----87999879977 Q ss_pred CCCHHHHHHHHHHCCCCHHHCCHHHHHHEEEECCCCCCCCEEEEECCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHH Q ss_conf 43125777765201222231043200010001278764520001056353344210105376788789999998876655 Q gi|254781004|r 338 PMNCPGHVAVFNHGLKSYRELPVRLAEFGSVYRNEPSGSLHGLMRVRGFTQDDAHVFCTKEQMFNECLKIHNLIISIYKD 417 (652) Q Consensus 338 Pmncp~h~~i~~~~~~SYrdLPlrl~e~~~~~R~E~sg~l~GL~R~ReF~~~Dah~F~~~eq~~~e~~~~~~~~~~v~~~ 417 (652) T Consensus 75 Pd~Ta~iaR~v~~~l~-~~~~p~rl~Y~g~vFRye~----------rEf~Q~GvEliG~~s~-----~Evi~la~~~l~~ 138 (281) T PRK12293 75 ADSTVDVVRIITKRLG-RSTEHKKWFYIQPVFRYPT----------TEIYQIGAEIIGESDL-----SKVLNIAAEIFNE 138 (281) T ss_pred CCCCHHHHHHHHHCCC-CCCCCEEEEEECCEEECCC----------CCCEEECEEEECCCCH-----HHHHHHHHHHHHH T ss_conf 8887899999996554-4689757998756353467----------7746847488779999-----9999999999997 Q ss_pred HCCCCC Q ss_conf 213321 Q gi|254781004|r 418 FGFEKI 423 (652) Q Consensus 418 ~g~~~~ 423 (652) T Consensus 139 lgl~~~ 144 (281) T PRK12293 139 LEIEPV 144 (281) T ss_pred CCCCCE T ss_conf 699624 |
|
| >PRK12295 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.3e-08 Score=79.25 Aligned_cols=135 Identities=16% Similarity=0.209 Sum_probs=96.6 Q ss_pred HHHHHHHHHHHH-HCCCEEEECCCCCCCCCCC-CCCCCCCCCCCCCEEECCCCCCCCCCEEEECCCCHHHHHHHHHHCCC Q ss_conf 999999999887-6896385554324431000-11210012555420100145677782377434312577776520122 Q gi|254781004|r 276 FQTLISYMRRKI-KDDYEEINTPQVLDQHLWQ-QSGHWDSYRANMFAVKCADDTIKDLRTFALKPMNCPGHVAVFNHGLK 353 (652) Q Consensus 276 ~~~ie~~ir~~~-~~G~~eV~tP~l~~~~Lw~-~SGh~~~y~~~mf~~~~~~~~~~~~~~~~LkPmncp~h~~i~~~~~~ 353 (652) T Consensus 7 ~~~~~~~i~~~f~~~Gy~~I~tP~lE~~d~~~~~~Ge--~~~~~~y~f~-----D~~g~~l~LRpDlT~piaR~~~~--- 76 (373) T PRK12295 7 SAALAEALLASFEAAGAVRVDPPILQPAEPFLDLSGE--DIRRRIFVTS-----DENGEELCLRPDFTIPVCRRHLA--- 76 (373) T ss_pred HHHHHHHHHHHHHHCCCEEECCCCCCCHHHHCCCCCC--HHHEEEEEEE-----CCCCCEEEEECCCCHHHHHHHHH--- T ss_conf 9999999999999869968568760417764143563--3110048899-----89989899817888999999998--- Q ss_pred CHHHCCHHHHHHEEEECCCCCCCCEEEEECCCCCCCCCEEECCHH--HHHHHHHHHHHHHHHHHHHHCCCCCEECCCCC Q ss_conf 223104320001000127876452000105635334421010537--67887899999988766552133210001465 Q gi|254781004|r 354 SYRELPVRLAEFGSVYRNEPSGSLHGLMRVRGFTQDDAHVFCTKE--QMFNECLKIHNLIISIYKDFGFEKIMVKLSTR 430 (652) Q Consensus 354 SYrdLPlrl~e~~~~~R~E~sg~l~GL~R~ReF~~~Dah~F~~~e--q~~~e~~~~~~~~~~v~~~~g~~~~~~~ls~~ 430 (652) T Consensus 77 ~~~~~p~R~~Y~G~VfR~q-~g------r~rEf~Q~GvEiiG~~~~~~aDa---Evi~la~~~l~~lgl~~~~i~ig~~ 145 (373) T PRK12295 77 SNAGEPARYSYLGEVFRQR-RD------RASEFLQAGIESFGRADPAAADA---EVLALALEALAALGPADLEIRLGDV 145 (373) T ss_pred HCCCCCEEEEEECCEEECC-CC------CCCCEEEEEEEEECCCCCCCCCH---HHHHHHHHHHHHCCCCCEEEEECCH T ss_conf 3899980078773322457-99------98851670157857898210649---9999999999975997639996678 |
|
| >TIGR00459 aspS_bact aspartyl-tRNA synthetase; InterPro: IPR004524 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=98.43 E-value=9.9e-07 Score=66.29 Aligned_cols=125 Identities=18% Similarity=0.255 Sum_probs=87.0 Q ss_pred HHHHHHHHHHHHHHHHH-CCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCEEEECCCCHHHHHHHHHH Q ss_conf 78999999999998876-89638555432443100011210012555420100145677782377434312577776520 Q gi|254781004|r 272 GWKIFQTLISYMRRKIK-DDYEEINTPQVLDQHLWQQSGHWDSYRANMFAVKCADDTIKDLRTFALKPMNCPGHVAVFNH 350 (652) Q Consensus 272 G~~i~~~ie~~ir~~~~-~G~~eV~tP~l~~~~Lw~~SGh~~~y~~~mf~~~~~~~~~~~~~~~~LkPmncp~h~~i~~~ 350 (652) T Consensus 150 ~L~lR~~v~~~~Rn~l~~~gFleiETP~LtKsT-------PEGARDyLVP-sRv~rsdG~g~FYALp------------Q 209 (653) T TIGR00459 150 RLKLRHKVTKAVRNFLDQQGFLEIETPILTKST-------PEGARDYLVP-SRVHRSDGKGEFYALP------------Q 209 (653) T ss_pred HHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCC-------CCCHHHCCCC-CCCCCCCCCCCEECCC------------C T ss_conf 986688989999866642787065067777888-------4311015775-5300368588451468------------9 Q ss_pred CCCCHHHCCH-----HHHHHEEEECCCCCCCCEEEEECCCCCCCCCE-EECCHHHHHHHHHHHHHHHH-HHHHHHCC Q ss_conf 1222231043-----20001000127876452000105635334421-01053767887899999988-76655213 Q gi|254781004|r 351 GLKSYRELPV-----RLAEFGSVYRNEPSGSLHGLMRVRGFTQDDAH-VFCTKEQMFNECLKIHNLII-SIYKDFGF 420 (652) Q Consensus 351 ~~~SYrdLPl-----rl~e~~~~~R~E~sg~l~GL~R~ReF~~~Dah-~F~~~eq~~~e~~~~~~~~~-~v~~~~g~ 420 (652) T Consensus 210 SPQlfKQLLMvsG~drYyQIArCFRDEDLRA----DRQPEFTQiD~E~SF~~~~~vm~l~E~l~~~vf~~v~~krGl 282 (653) T TIGR00459 210 SPQLFKQLLMVSGVDRYYQIARCFRDEDLRA----DRQPEFTQIDMEMSFMTQEDVMDLIEKLVSGVFKEVKGKRGL 282 (653) T ss_pred CHHHHHHHHHHCCCCCCEEEEEEECCCCCCC----CCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCE T ss_conf 7568999875125553135788976625666----577873244263112893568999999999999997078513 |
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases . Aspartyl tRNA synthetase 6.1.1.12 from EC is an alpha2 dimer that belongs to class IIb. Structural analysis combined with mutagenesis and enzymology data on the yeast enzyme point to a tRNA binding process that starts by a recognition event between the tRNA anticodon loop and the synthetase anticodon binding module . This family represents aspartyl-tRNA synthetases from the bacteria and from mitochondria. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn). ; GO: 0000166 nucleotide binding, 0004815 aspartate-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006422 aspartyl-tRNA aminoacylation, 0005737 cytoplasm. |
| >COG0173 AspS Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.41 E-value=7.9e-07 Score=66.97 Aligned_cols=116 Identities=20% Similarity=0.330 Sum_probs=78.0 Q ss_pred HHHHHHHHHHHHHHHHH-CCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCEEEECCCCHHHHHHHHHH Q ss_conf 78999999999998876-89638555432443100011210012555420100145677782377434312577776520 Q gi|254781004|r 272 GWKIFQTLISYMRRKIK-DDYEEINTPQVLDQHLWQQSGHWDSYRANMFAVKCADDTIKDLRTFALKPMNCPGHVAVFNH 350 (652) Q Consensus 272 G~~i~~~ie~~ir~~~~-~G~~eV~tP~l~~~~Lw~~SGh~~~y~~~mf~~~~~~~~~~~~~~~~LkPmncp~h~~i~~~ 350 (652) T Consensus 140 ~l~lR~kv~~~iR~~ld~~gF~EiETPiLtkSTP-------E-----------------GARDfLVPSRv~~G~FYALPQ 195 (585) T COG0173 140 NLKLRSKVTKAIRNFLDDQGFLEIETPILTKSTP-------E-----------------GARDFLVPSRVHPGKFYALPQ 195 (585) T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCC-------C-----------------CCCCCCCCCCCCCCCEEECCC T ss_conf 9999999999999977654985734674146798-------6-----------------554430134558996530688 Q ss_pred CCCCHHHCCH-----HHHHHEEEECCCCCCCCEEEEECCCCCCCCCE-EECCHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 1222231043-----20001000127876452000105635334421-01053767887899999988766552 Q gi|254781004|r 351 GLKSYRELPV-----RLAEFGSVYRNEPSGSLHGLMRVRGFTQDDAH-VFCTKEQMFNECLKIHNLIISIYKDF 418 (652) Q Consensus 351 ~~~SYrdLPl-----rl~e~~~~~R~E~sg~l~GL~R~ReF~~~Dah-~F~~~eq~~~e~~~~~~~~~~v~~~~ 418 (652) T Consensus 196 SPQlfKQLLMvsGfdRYyQIarCFRDEDlRa----DRQPEFTQiD~EmSF~~~edv~~~~E~l~---~~vf~~~ 262 (585) T COG0173 196 SPQLFKQLLMVAGFDRYYQIARCFRDEDLRA----DRQPEFTQIDLEMSFVDEEDVMELIEKLL---RYVFKEV 262 (585) T ss_pred CHHHHHHHHHHHCCCCEEEEEEEECCCCCCC----CCCCCCEEEEEEEECCCHHHHHHHHHHHH---HHHHHHH T ss_conf 8799999998805330023565404664444----46875336767764388999999999999---9999985 |
|
| >TIGR00415 serS_MJ seryl-tRNA synthetase; InterPro: IPR004503 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=98.30 E-value=4.9e-06 Score=61.50 Aligned_cols=164 Identities=16% Similarity=0.226 Sum_probs=135.1 Q ss_pred EECCC-CCCEEEEECCHHHHHHHHHHHHHHH-HHC-CCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCC----- Q ss_conf 42267-8743565010789999999999988-768-963855543244310001121001255542010014567----- Q gi|254781004|r 257 HIAED-GSGVIFWHRKGWKIFQTLISYMRRK-IKD-DYEEINTPQVLDQHLWQQSGHWDSYRANMFAVKCADDTI----- 328 (652) Q Consensus 257 ~~~~~-~~G~~~wlP~G~~i~~~ie~~ir~~-~~~-G~~eV~tP~l~~~~Lw~~SGh~~~y~~~mf~~~~~~~~~----- 328 (652) T Consensus 206 w~~~~pg~g~w~~~p~~~~~~~~~~~~~~~~~~~~~g~~~c~~p~~~p~~~~~~~~~~~g~p~g~~~~~~p~~~p~~~~~ 285 (520) T TIGR00415 206 WVKKFPGRGQWFYGPPITALFRALEELFVEEVVKPLGFVECLFPKLIPLDILYKLRYLEGLPEGLYYCCPPKRDPELFEE 285 (520) T ss_pred CHHCCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHH T ss_conf 01126887620016506788888998889887654011345310010267777767641365452552277556357898 Q ss_pred -------------------CCCCEEEECCCCHHHHHHHHHHCCCCHHHCCHHHHH-HEEEECCCCCCCCEEEEECCCCCC Q ss_conf -------------------778237743431257777652012222310432000-100012787645200010563533 Q gi|254781004|r 329 -------------------KDLRTFALKPMNCPGHVAVFNHGLKSYRELPVRLAE-FGSVYRNEPSGSLHGLMRVRGFTQ 388 (652) Q Consensus 329 -------------------~~~~~~~LkPmncp~h~~i~~~~~~SYrdLPlrl~e-~~~~~R~E~sg~l~GL~R~ReF~~ 388 (652) T Consensus 286 ~~~~~~~~~~~p~~~~~~~~~dpg~~~~p~~c~p~~~~~~~~~~~~~d~p~~~~d~~gw~~~w~~gg-~~g~d~~~~~~~ 364 (520) T TIGR00415 286 FKNELLINKEVPLDLLKNGLKDPGYVLAPAQCEPFYQFLEGEVVDAEDLPVKFFDRSGWTYRWEGGG-AKGLDRVNEFLR 364 (520) T ss_pred HHHHHHHHCCCCHHHHHHHHCCCCCEECCCCCCHHHHHHCCCCCCCCCCCEEEECCCCCEEEECCCC-CCCHHHHHHHHH T ss_conf 7665542003557898753048770430311003567541211000014311220577424423766-321245545331 Q ss_pred CCCEEECCHHHHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 442101053767887899999988766552133 Q gi|254781004|r 389 DDAHVFCTKEQMFNECLKIHNLIISIYKDFGFE 421 (652) Q Consensus 389 ~Dah~F~~~eq~~~e~~~~~~~~~~v~~~~g~~ 421 (652) T Consensus 365 ~~~~w~~~p~~~~~~~d~~~~~~~~~~~~~~~~ 397 (520) T TIGR00415 365 VELVWLGEPGFTEETRDKTLELAEDLADELDLE 397 (520) T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 113551475201233344566555555541001 |
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases . Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa . The seryl-tRNA synthetases from a few of the archaea that belong to this group are different from the set of mutually more closely related seryl-tRNA synthetases from eubacteria, eukaryotes, and other archaea (IPR002317 from INTERPRO).; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm. |
| >COG3705 HisZ ATP phosphoribosyltransferase involved in histidine biosynthesis [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.89 E-value=4.7e-05 Score=54.71 Aligned_cols=152 Identities=18% Similarity=0.238 Sum_probs=105.9 Q ss_pred CCCCCEEEEECCHHHHHHHHHHHHHHHHH-CCCEEEECCCCCCCCCCCCC-CCCCCCCCCCCEEECCCCCCCCCCEEEEC Q ss_conf 67874356501078999999999998876-89638555432443100011-21001255542010014567778237743 Q gi|254781004|r 260 EDGSGVIFWHRKGWKIFQTLISYMRRKIK-DDYEEINTPQVLDQHLWQQS-GHWDSYRANMFAVKCADDTIKDLRTFALK 337 (652) Q Consensus 260 ~~~~G~~~wlP~G~~i~~~ie~~ir~~~~-~G~~eV~tP~l~~~~Lw~~S-Gh~~~y~~~mf~~~~~~~~~~~~~~~~Lk 337 (652) T Consensus 4 ~lp~g~rd~Lp~e~~~~~~i~~~l~~~f~~~Gy~~v~tP~lE~~d~~l~~~g~~--l~~~~f~l~d-----~~g~~l~LR 76 (390) T COG3705 4 QLPEGIRDVLPLEARRKEEIRDQLLALFRAWGYERVETPTLEPADPLLDGAGED--LRRRLFKLED-----ETGGRLGLR 76 (390) T ss_pred CCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCHH--HHHHHEEEEC-----CCCCEEEEC T ss_conf 688752010636776479999999999998087404663134026654022255--5522068765-----789768835 Q ss_pred CCCHHHHHHHHHHCCCCHHHCCHHHHHHEEEECCCCCCCCEEEEECCCCCCCCCEEECC-HHHHHHHHHHHHHHHHHHHH Q ss_conf 43125777765201222231043200010001278764520001056353344210105-37678878999999887665 Q gi|254781004|r 338 PMNCPGHVAVFNHGLKSYRELPVRLAEFGSVYRNEPSGSLHGLMRVRGFTQDDAHVFCT-KEQMFNECLKIHNLIISIYK 416 (652) Q Consensus 338 Pmncp~h~~i~~~~~~SYrdLPlrl~e~~~~~R~E~sg~l~GL~R~ReF~~~Dah~F~~-~eq~~~e~~~~~~~~~~v~~ 416 (652) T Consensus 77 pD~T~pVaR~~~~~~~~---~P~Rl~Y~G~Vfr~~-~~-~~g--~~~Ef~QaGiEllG~~~~~ADaE---vi~la~~~L~ 146 (390) T COG3705 77 PDFTIPVARIHATLLAG---TPLRLSYAGKVFRAR-EG-RHG--RRAEFLQAGIELLGDDSAAADAE---VIALALAALK 146 (390) T ss_pred CCCCHHHHHHHHHHCCC---CCCEEEECCHHHHCC-HH-CCC--CCCCHHHHHHHHHCCCCCHHHHH---HHHHHHHHHH T ss_conf 43308999999982378---871466401454020-10-267--64204553367737872000289---9999999999 Q ss_pred HHCCCCCEECCC Q ss_conf 521332100014 Q gi|254781004|r 417 DFGFEKIMVKLS 428 (652) Q Consensus 417 ~~g~~~~~~~ls 428 (652) T Consensus 147 ~~gl~~~~l~LG 158 (390) T COG3705 147 ALGLADLKLELG 158 (390) T ss_pred HCCCCCEEEEEC T ss_conf 748867489945 |
|
| >PRK04172 pheS phenylalanyl-tRNA synthetase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.0075 Score=39.53 Aligned_cols=142 Identities=18% Similarity=0.263 Sum_probs=80.7 Q ss_pred HHHHHHHHHHHHHHHHH-CCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCEEEECCC----------- Q ss_conf 78999999999998876-896385554324431000112100125554201001456777823774343----------- Q gi|254781004|r 272 GWKIFQTLISYMRRKIK-DDYEEINTPQVLDQHLWQQSGHWDSYRANMFAVKCADDTIKDLRTFALKPM----------- 339 (652) Q Consensus 272 G~~i~~~ie~~ir~~~~-~G~~eV~tP~l~~~~Lw~~SGh~~~y~~~mf~~~~~~~~~~~~~~~~LkPm----------- 339 (652) T Consensus 243 ~~Hp~~~~~~~~r~i~~~mGF~e~~g~~v-e~~fwN--------fdaLf~Pq~HPARd~~Dtf~l~~~~~~~lp~~~~~~ 313 (501) T PRK04172 243 KKHPYREFIEEVRDILVEMGFEEVKGPIV-ETEFWN--------FDALFQPQDHPAREMQDTFYLKYPSKGELPEELVER 313 (501) T ss_pred CCCHHHHHHHHHHHHHHHCCCEEEECCCE-ECCCCC--------HHHHCCCCCCCCCCCCCEEEECCCCCCCCCHHHHHH T ss_conf 74889999999999999789768536610-100003--------343058989985554453786576545573788988 Q ss_pred ----CHH------------------------HHHHHHHH-CCCCHHHCCHHHHHHEEEECCCCCCCCEEEEECCCCCCCC Q ss_conf ----125------------------------77776520-1222231043200010001278764520001056353344 Q gi|254781004|r 340 ----NCP------------------------GHVAVFNH-GLKSYRELPVRLAEFGSVYRNEPSGSLHGLMRVRGFTQDD 390 (652) Q Consensus 340 ----ncp------------------------~h~~i~~~-~~~SYrdLPlrl~e~~~~~R~E~sg~l~GL~R~ReF~~~D 390 (652) T Consensus 314 Vk~~HE~Gg~~gS~Gw~y~w~~~~~~~~~lRthtt~~~~r~l~~~~~~p~~~f~~~rvfR~e~~d~----tH~~~F~Q~e 389 (501) T PRK04172 314 VKEVHEHGGDTGSRGWGYKWDEDIAKRLVLRTHTTALSARYLAERPEPPGKYFSIGRVFRPETIDA----THLPEFYQLE 389 (501) T ss_pred HHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHCCCCCEEEECCCCEEECCCCCC----CCCCEEEEEE T ss_conf 999874277678877677778556643010436746679999746899835735650542688886----5441332224 Q ss_pred CEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCC Q ss_conf 2101053767887899999988766552133210001465 Q gi|254781004|r 391 AHVFCTKEQMFNECLKIHNLIISIYKDFGFEKIMVKLSTR 430 (652) Q Consensus 391 ah~F~~~eq~~~e~~~~~~~~~~v~~~~g~~~~~~~ls~~ 430 (652) T Consensus 390 g~v~~~----~~~~~~L~g~l~~f~~~~g~~~~rfrp~yf 425 (501) T PRK04172 390 GIVMGE----DVSFRHLLGILKEFYKRLGFEEVKFRPAYF 425 (501) T ss_pred EEEECC----CCCHHHHHHHHHHHHHHHCCCCEEECCCCC T ss_conf 899848----887999999999999985886078679989 |
|
| >PTZ00326 phenylalanyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.02 Score=36.56 Aligned_cols=141 Identities=15% Similarity=0.187 Sum_probs=81.5 Q ss_pred HHHHHHHHHHHHHHH-HCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCEEEECCCC----------- Q ss_conf 899999999999887-68963855543244310001121001255542010014567778237743431----------- Q gi|254781004|r 273 WKIFQTLISYMRRKI-KDDYEEINTPQVLDQHLWQQSGHWDSYRANMFAVKCADDTIKDLRTFALKPMN----------- 340 (652) Q Consensus 273 ~~i~~~ie~~ir~~~-~~G~~eV~tP~l~~~~Lw~~SGh~~~y~~~mf~~~~~~~~~~~~~~~~LkPmn----------- 340 (652) T Consensus 241 ~hp~~~~~~~~r~if~~mGF~E~~~~~~ves~fwNf--------DaLf~Pq~HPARd~~DTF~l~~p~~~~~~~~~~~~~ 312 (505) T PTZ00326 241 LHPLLKVRQEFREIFMEMGFEEMPTNRWVESSFWNF--------DALFIPQQHPARDLQDTFFLSKPETSKFLDAEYVER 312 (505) T ss_pred CCHHHHHHHHHHHHHHHCCCEECCCCCEEEECCCCC--------HHHCCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHH T ss_conf 688999999999999977976766897133132131--------110489899866523347744754245687899998 Q ss_pred ---------------------------------HHHHH-HHHH---HCCCCHHHCCHHHHHHEEEECCCCCCCCEEEEEC Q ss_conf ---------------------------------25777-7652---0122223104320001000127876452000105 Q gi|254781004|r 341 ---------------------------------CPGHV-AVFN---HGLKSYRELPVRLAEFGSVYRNEPSGSLHGLMRV 383 (652) Q Consensus 341 ---------------------------------cp~h~-~i~~---~~~~SYrdLPlrl~e~~~~~R~E~sg~l~GL~R~ 383 (652) T Consensus 313 Vk~vHe~G~~gs~Gw~y~W~~~~a~~~~LRthTt~vs~r~l~~~~~~~~~~~~~~P~k~fsi~rv~R~e~~d~----th~ 388 (505) T PTZ00326 313 VKAVHSGGGYGSIGWQYNWKLEEARKNVLRTHTTAVSARMLYKLAQQYQKGKGFKPKKYFSIDRVFRNETLDA----THL 388 (505) T ss_pred HHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCEEEECCCEEECCCCCC----CCC T ss_conf 8888506887888767787977875206365775376999998754046556889814752372641577776----534 Q ss_pred CCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCC Q ss_conf 6353344210105376788789999998876655213321000146 Q gi|254781004|r 384 RGFTQDDAHVFCTKEQMFNECLKIHNLIISIYKDFGFEKIMVKLST 429 (652) Q Consensus 384 ReF~~~Dah~F~~~eq~~~e~~~~~~~~~~v~~~~g~~~~~~~ls~ 429 (652) T Consensus 389 ~~f~Q~eg~~~~~----~~~~~~l~~~l~~f~~~~g~~~~rfrp~y 430 (505) T PTZ00326 389 AEFHQVEGVVIDR----NLSLGDLMGTLREFFRRIGISKLRFKPAF 430 (505) T ss_pred CEEEEEEEEEECC----CCCHHHHHHHHHHHHHHHCCCCEEECCCC T ss_conf 0455435789648----88899999999999998498757868888 |
|
| >cd00496 PheRS_alpha_core Phenylalanyl-tRNA synthetase (PheRS) alpha chain catalytic core domain | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.14 Score=30.75 Aligned_cols=121 Identities=13% Similarity=0.189 Sum_probs=67.6 Q ss_pred HHHHHHHHHHHH-CCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCC-------CCEEEECCCCHHHHHHHH Q ss_conf 999999998876-896385554324431000112100125554201001456777-------823774343125777765 Q gi|254781004|r 277 QTLISYMRRKIK-DDYEEINTPQVLDQHLWQQSGHWDSYRANMFAVKCADDTIKD-------LRTFALKPMNCPGHVAVF 348 (652) Q Consensus 277 ~~ie~~ir~~~~-~G~~eV~tP~l~~~~Lw~~SGh~~~y~~~mf~~~~~~~~~~~-------~~~~~LkPmncp~h~~i~ 348 (652) T Consensus 4 ~~~~~~i~~~f~~~GF~~~~gp~ie~~--------~~NF-D~Ln~P~dHPaR~~~DTfy~~~~~~~lLRtHTS~~q~r~l 74 (218) T cd00496 4 NKVIEEIEDIFVSMGFTEVEGPEVETD--------FYNF-DALNIPQDHPARDMQDTFYINDPARLLLRTHTSAVQARAL 74 (218) T ss_pred HHHHHHHHHHHHHCCCEEECCCCCCCC--------HHHH-HHHCCCCCCCCCCCCCEEEECCCCCCEECCCCCHHHHHHH T ss_conf 899999999998779868228951231--------0304-5338598875537243278637766021578756679999 Q ss_pred HHCCCCHHHCCHHHHHHEEEECCCCCCCCEEEEECCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 20122223104320001000127876452000105635334421010537678878999999887665521 Q gi|254781004|r 349 NHGLKSYRELPVRLAEFGSVYRNEPSGSLHGLMRVRGFTQDDAHVFCTKEQMFNECLKIHNLIISIYKDFG 419 (652) Q Consensus 349 ~~~~~SYrdLPlrl~e~~~~~R~E~sg~l~GL~R~ReF~~~Dah~F~~~eq~~~e~~~~~~~~~~v~~~~g 419 (652) T Consensus 75 ~~~-----~~p~~~~~~G~VyR~D~iDa----tH~~~FhQ~Eg~~v~~~----~~~~~Lk~~l~~~~~~lf 132 (218) T cd00496 75 AKL-----KPPIRIFSIGRVYRNDEIDA----THLPEFHQIEGLVVDKG----LTFADLKGTLEEFAKELF 132 (218) T ss_pred HHC-----CCCCEEEECCCEEECCCCCC----CCCCEEEEEEEEEEECC----CCHHHHHHHHHHHHHHHC T ss_conf 745-----89817994250465388984----31531257637999565----119999999999999973 |
PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer. |
| >cd00858 GlyRS_anticodon GlyRS Glycyl-anticodon binding domain | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.7e-27 Score=207.22 Aligned_cols=99 Identities=21% Similarity=0.270 Sum_probs=95.7 Q ss_pred CCCCCCCCEEEEEEECC--HHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHCCCCEEEEECHHHHHCCCEEEE Q ss_conf 08873378089998579--6689999999999998798899975896636766655434898899987425325818999 Q gi|254781004|r 545 NLPLWLSPIQAIVTTIT--SSAVEYAQEIANLLKSHHLSIETDFRNETINYKIREHSIKKIPIIIICGDKEASERSIGIR 622 (652) Q Consensus 545 ~~P~wLAP~QV~Iipi~--e~~~eya~~i~~~L~~~girV~~Ddr~~~~G~Kir~a~l~giP~~ivIG~ke~e~~~Vtir 622 (652) T Consensus 19 ~lP~~lAP~qv~IiPi~~~d~~~~~a~~i~~~L~~~gi~v~~Dd~~-s~G~K~~~~d~~giP~~ivIg~~~le~~~VtiR 97 (121) T cd00858 19 RLPPALAPIKVAVLPLVKRDELVEIAKEISEELRELGFSVKYDDSG-SIGRRYARQDEIGTPFCVTVDFDTLEDGTVTIR 97 (121) T ss_pred ECCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEECCC-CHHHHHHHHHHHCCCEEEEEECCEECCCEEEEE T ss_conf 8788638837999974160777999999999998779779970388-831444678874898399992761037879999 Q ss_pred ECCCCCEEEECHHHHHHHHHHH Q ss_conf 8898866334299999999873 Q gi|254781004|r 623 RFGSTTTQKVSLLDAIPILTKE 644 (652) Q Consensus 623 ~R~~~~~~~i~lee~i~~l~~e 644 (652) T Consensus 98 ~Rdt~~q~~v~i~el~~~i~~l 119 (121) T cd00858 98 ERDSMRQVRVKIEELPSYLREL 119 (121) T ss_pred ECCCCCEEEEEHHHHHHHHHHH T ss_conf 9899957899999999999998 |
GlyRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only. |
| >cd00862 ProRS_anticodon_zinc ProRS Prolyl-anticodon binding domain, long version found predominantly in eukaryotes and archaea | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.6e-23 Score=179.69 Aligned_cols=101 Identities=24% Similarity=0.393 Sum_probs=94.8 Q ss_pred CCCCCCCCCCEEEEEEECC------HHHHHHHHHHHHHHHHCCCEEEEECCCC-CCCHHHHHHHHCCCCEEEEECHHHHH Q ss_conf 8708873378089998579------6689999999999998798899975896-63676665543489889998742532 Q gi|254781004|r 543 KGNLPLWLSPIQAIVTTIT------SSAVEYAQEIANLLKSHHLSIETDFRNE-TINYKIREHSIKKIPIIIICGDKEAS 615 (652) Q Consensus 543 ~g~~P~wLAP~QV~Iipi~------e~~~eya~~i~~~L~~~girV~~Ddr~~-~~G~Kir~a~l~giP~~ivIG~ke~e 615 (652) T Consensus 1 GLvlPP~iAP~QVVIiPi~~k~~~~~~v~~~~~~i~~~L~~~~iRv~iD~rd~~~pG~K~~~wE~kGVPiRIEIGprDle 80 (202) T cd00862 1 GLVLPPRVAPIQVVIVPIGIKDEKREEVLEAADELAERLKAAGIRVHVDDRDNYTPGWKFNDWELKGVPLRIEIGPRDLE 80 (202) T ss_pred CCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHCCCEEEEECHHHHH T ss_conf 97368420585499997348723289999999999999986798899977878688888899998089779998715863 Q ss_pred CCCEEEEECCCCCEEEECHHHHHHHHHH Q ss_conf 5818999889886633429999999987 Q gi|254781004|r 616 ERSIGIRRFGSTTTQKVSLLDAIPILTK 643 (652) Q Consensus 616 ~~~Vtir~R~~~~~~~i~lee~i~~l~~ 643 (652) T Consensus 81 ~~~v~v~rRD~~~K~~v~~~el~~~i~~ 108 (202) T cd00862 81 KNTVVIVRRDTGEKKTVPLAELVEKVPE 108 (202) T ss_pred CCCEEEEEECCCCEEEEEHHHHHHHHHH T ss_conf 7918999917995789788999999999 |
ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only, and an additional C-terminal zinc-binding domain specific to this subfamily of aaRSs. |
| >cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.3e-23 Score=179.20 Aligned_cols=91 Identities=21% Similarity=0.335 Sum_probs=88.4 Q ss_pred CEEEEEEEC---CHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHCCCCEEEEECHHHHHCCCEEEEECCCCC Q ss_conf 808999857---96689999999999998798899975896636766655434898899987425325818999889886 Q gi|254781004|r 552 PIQAIVTTI---TSSAVEYAQEIANLLKSHHLSIETDFRNETINYKIREHSIKKIPIIIICGDKEASERSIGIRRFGSTT 628 (652) Q Consensus 552 P~QV~Iipi---~e~~~eya~~i~~~L~~~girV~~Ddr~~~~G~Kir~a~l~giP~~ivIG~ke~e~~~Vtir~R~~~~ 628 (652) T Consensus 1 P~qv~Iipi~~~~~~~~~~a~~l~~~L~~~gi~v~~Ddr~~~~G~K~~~ael~GiP~~iiiG~k~~~~~~v~vr~R~~~~ 80 (94) T cd00861 1 PFDVVIIPMNMKDEVQQELAEKLYAELQAAGVDVLLDDRNERPGVKFADADLIGIPYRIVVGKKSAAEGIVEIKVRKTGE 80 (94) T ss_pred CEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEECCCCHHCCEEEEEECCCCC T ss_conf 94999997489988999999999999988798999987997277999999974998799990662117999999978995 Q ss_pred EEEECHHHHHHHHH Q ss_conf 63342999999998 Q gi|254781004|r 629 TQKVSLLDAIPILT 642 (652) Q Consensus 629 ~~~i~lee~i~~l~ 642 (652) T Consensus 81 ~~~v~~~~~i~~ik 94 (94) T cd00861 81 KEEISIDELLEFLQ 94 (94) T ss_pred EEEECHHHHHHHHC T ss_conf 68971999999759 |
ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only. |
| >cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.5e-23 Score=177.50 Aligned_cols=91 Identities=34% Similarity=0.577 Sum_probs=89.5 Q ss_pred CEEEEEEECCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHCCCCEEEEECHHHHHCCCEEEEECCCCCEEE Q ss_conf 80899985796689999999999998798899975896636766655434898899987425325818999889886633 Q gi|254781004|r 552 PIQAIVTTITSSAVEYAQEIANLLKSHHLSIETDFRNETINYKIREHSIKKIPIIIICGDKEASERSIGIRRFGSTTTQK 631 (652) Q Consensus 552 P~QV~Iipi~e~~~eya~~i~~~L~~~girV~~Ddr~~~~G~Kir~a~l~giP~~ivIG~ke~e~~~Vtir~R~~~~~~~ 631 (652) T Consensus 1 P~QV~Iipi~~~~~~ya~~i~~~Lr~~girv~~D~~~~~lg~ki~~a~~~~ip~~iiiG~~E~~~~~v~vr~r~~~~q~~ 80 (91) T cd00860 1 PVQVVVIPVTDEHLDYAKEVAKKLSDAGIRVEVDLRNEKLGKKIREAQLQKIPYILVVGDKEVETGTVSVRTRDGGDLGS 80 (91) T ss_pred CEEEEEEEECHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHCCCEEEEECHHHHHCCEEEEEECCCCCEEE T ss_conf 92899998888799999999999998899899965889875999999981999899996046538979999989993678 Q ss_pred ECHHHHHHHHH Q ss_conf 42999999998 Q gi|254781004|r 632 VSLLDAIPILT 642 (652) Q Consensus 632 i~lee~i~~l~ 642 (652) T Consensus 81 v~~~~~i~~lk 91 (91) T cd00860 81 MSLDEFIEKLK 91 (91) T ss_pred EEHHHHHHHHC T ss_conf 77999999749 |
ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only. |
| >cd00738 HGTP_anticodon HGTP anticodon binding domain, as found at the C-terminus of histidyl, glycyl, threonyl and prolyl tRNA synthetases, which are classified as a group of class II aminoacyl-tRNA synthetases (aaRS) | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.8e-22 Score=174.97 Aligned_cols=90 Identities=22% Similarity=0.419 Sum_probs=87.3 Q ss_pred CEEEEEEECCH---HHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHCCCCEEEEECHHHHHCCCEEEEECCCCC Q ss_conf 80899985796---689999999999998798899975896636766655434898899987425325818999889886 Q gi|254781004|r 552 PIQAIVTTITS---SAVEYAQEIANLLKSHHLSIETDFRNETINYKIREHSIKKIPIIIICGDKEASERSIGIRRFGSTT 628 (652) Q Consensus 552 P~QV~Iipi~e---~~~eya~~i~~~L~~~girV~~Ddr~~~~G~Kir~a~l~giP~~ivIG~ke~e~~~Vtir~R~~~~ 628 (652) T Consensus 1 P~qv~Iipi~~~~~e~~~~a~~l~~~L~~~gi~v~~Ddr~~~~g~k~~~a~~~giP~~iiiG~~e~e~~~v~vr~r~~~e 80 (94) T cd00738 1 PIDVAIVPLTDPRVEAREYAQKLLNALLANGIRVLYDDRERKIGKKFREADLRGVPFAVVVGEDELENGKVTVKSRDTGE 80 (94) T ss_pred CEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECCHHHHCCEEEEEECCCCC T ss_conf 91999998438977899999999999998899899987999975999999974998999988003437989999989997 Q ss_pred EEEECHHHHHHHH Q ss_conf 6334299999999 Q gi|254781004|r 629 TQKVSLLDAIPIL 641 (652) Q Consensus 629 ~~~i~lee~i~~l 641 (652) T Consensus 81 q~~v~~~e~~~~l 93 (94) T cd00738 81 SETLHVDELPEFL 93 (94) T ss_pred EEEEEHHHHHHHH T ss_conf 7898999988865 |
In aaRSs, the anticodon binding domain is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only. This domain is also found in the accessory subunit of mitochondrial polymerase gamma (Pol gamma b). |
| >cd02426 Pol_gamma_b_Cterm C-terminal domain of mitochondrial DNA polymerase gamma B subunit, which is required for processivity | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.6e-19 Score=150.30 Aligned_cols=100 Identities=12% Similarity=0.161 Sum_probs=91.4 Q ss_pred CCCCCCCCEEEEEEECC---HHHHHHHHHHHHHHHHCCCEE----EEECCCCCCCHHHHHHHHCCCCEEEEECHHHHHCC Q ss_conf 08873378089998579---668999999999999879889----99758966367666554348988999874253258 Q gi|254781004|r 545 NLPLWLSPIQAIVTTIT---SSAVEYAQEIANLLKSHHLSI----ETDFRNETINYKIREHSIKKIPIIIICGDKEASER 617 (652) Q Consensus 545 ~~P~wLAP~QV~Iipi~---e~~~eya~~i~~~L~~~girV----~~Ddr~~~~G~Kir~a~l~giP~~ivIG~ke~e~~ 617 (652) T Consensus 20 ~Lhp~LAP~Kvai~~~~~~~~eL~~~a~~l~~~L~~~gi~v~~~~~~d~-~~sIGkrY~r~DeiGtP~citvD~~TLedg 98 (128) T cd02426 20 KLHPCLAPYKVAIDCGKGDTAELRDLCQGLKNELREAGLSVWPGYLETQ-HSSLEQLLDKYDEMGVLFTLLISEQTLENG 98 (128) T ss_pred ECCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC-CCCHHHHHHHHHHCCCCEEEEECCCCCCCC T ss_conf 4488747717999703688188899999999999873994354635454-347889887766428847999778743479 Q ss_pred CEEEEECCCCCEEEECHHHHHHHHHHHC Q ss_conf 1899988988663342999999998731 Q gi|254781004|r 618 SIGIRRFGSTTTQKVSLLDAIPILTKES 645 (652) Q Consensus 618 ~Vtir~R~~~~~~~i~lee~i~~l~~e~ 645 (652) T Consensus 99 tVtlR~RDT~~QerI~I~dl~~yl~~~i 126 (128) T cd02426 99 LLQLRSRDTTLKETIHISDLPDYLLRYI 126 (128) T ss_pred CEEEEECCCCHHEEEEHHHHHHHHHHHH T ss_conf 5898854760213576999899999986 |
Polymerase gamma replicates and repairs mitochondrial DNA. The c-terminal domain of its B subunit is strikingly similar to the anticodon-binding domain of glycyl tRNA synthetase. |
| >pfam03129 HGTP_anticodon Anticodon binding domain | Back alignment and domain information |
|---|
Probab=99.80 E-value=9.4e-19 Score=149.24 Aligned_cols=90 Identities=27% Similarity=0.451 Sum_probs=87.0 Q ss_pred EEEEEECCHH--HHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHCCCCEEEEECHHHHHCCCEEEEECCCCCEEE Q ss_conf 8999857966--89999999999998798899975896636766655434898899987425325818999889886633 Q gi|254781004|r 554 QAIVTTITSS--AVEYAQEIANLLKSHHLSIETDFRNETINYKIREHSIKKIPIIIICGDKEASERSIGIRRFGSTTTQK 631 (652) Q Consensus 554 QV~Iipi~e~--~~eya~~i~~~L~~~girV~~Ddr~~~~G~Kir~a~l~giP~~ivIG~ke~e~~~Vtir~R~~~~~~~ 631 (652) T Consensus 1 qV~Vipi~~~~~~~~~a~~i~~~Lr~~gi~v~~d~~~~~~~~k~~~a~~~g~p~~iiiG~~E~~~~~v~ik~r~~~~~~~ 80 (93) T pfam03129 1 QVVVIPLGEKDELEDYAQKLAEELREAGIRVELDDRNESLGKKFRDADLIGIPFRLVVGEKELENGTVTVRDRDTGEKET 80 (93) T ss_pred CEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHCCCEEEEECHHHHHCCEEEEEECCCCCEEE T ss_conf 99999822867689999999999987899799988999978999989870999078897788858989999999997889 Q ss_pred ECHHHHHHHHHH Q ss_conf 429999999987 Q gi|254781004|r 632 VSLLDAIPILTK 643 (652) Q Consensus 632 i~lee~i~~l~~ 643 (652) T Consensus 81 v~~~~~~~~i~~ 92 (93) T pfam03129 81 VSLEELVEKLKE 92 (93) T ss_pred EEHHHHHHHHHH T ss_conf 879999999974 |
This domain is found in histidyl, glycyl, threonyl and prolyl tRNA synthetases it is probably the anticodon binding domain. |
| >cd00859 HisRS_anticodon HisRS Histidyl-anticodon binding domain | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.4e-15 Score=127.43 Aligned_cols=90 Identities=16% Similarity=0.283 Sum_probs=87.6 Q ss_pred EEEEEEECCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHCCCCEEEEECHHHHHCCCEEEEECCCCCEEEE Q ss_conf 08999857966899999999999987988999758966367666554348988999874253258189998898866334 Q gi|254781004|r 553 IQAIVTTITSSAVEYAQEIANLLKSHHLSIETDFRNETINYKIREHSIKKIPIIIICGDKEASERSIGIRRFGSTTTQKV 632 (652) Q Consensus 553 ~QV~Iipi~e~~~eya~~i~~~L~~~girV~~Ddr~~~~G~Kir~a~l~giP~~ivIG~ke~e~~~Vtir~R~~~~~~~i 632 (652) T Consensus 2 vdv~ii~~~~~~~~~a~~i~~~LR~~gi~v~~~~~~~~l~kqlk~A~k~~~~~~iiiG~~E~~~~~v~iK~~~t~~q~~i 81 (91) T cd00859 2 VDVYVVPLGEGALSEALELAEQLRDAGIKAEIDYGGRKLKKQFKYADRSGARFAVILGEDELAAGVVTVKDLETGEQETV 81 (91) T ss_pred CEEEEEEECHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCEEEEECCHHHHCCEEEEEECCCCCEEEE T ss_conf 48999981869999999999999988993999736887889999999709988999865142169799999999958998 Q ss_pred CHHHHHHHHH Q ss_conf 2999999998 Q gi|254781004|r 633 SLLDAIPILT 642 (652) Q Consensus 633 ~lee~i~~l~ 642 (652) T Consensus 82 ~~~eli~~lK 91 (91) T cd00859 82 ALDELVEELK 91 (91) T ss_pred EHHHHHHHHC T ss_conf 8999999759 |
HisRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only. |
| >COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.2e-20 Score=160.48 Aligned_cols=284 Identities=20% Similarity=0.351 Sum_probs=212.4 Q ss_pred CCCCCEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECC----CCCCEEEEECCHHHHHHHHHHHHHH- Q ss_conf 75642068999998379889999999999753200887541144044226----7874356501078999999999998- Q gi|254781004|r 211 DSNRPMLSRIYGTAWNTQQELTQYLYFLEESEKRDHRKLAREMDLFHIAE----DGSGVIFWHRKGWKIFQTLISYMRR- 285 (652) Q Consensus 211 d~~~~~l~Riyg~af~~~~~l~~~~~~~eea~~rdHr~lg~~~~lf~~~~----~~~G~~~wlP~G~~i~~~ie~~ir~- 285 (652) T Consensus 118 de~~n~~vr~~g~~~~~----------~~~f~pk~H~~lge~l~~~Df~~aaKvsGsrf~~~~~~~a~L~rAL~~f~ld~ 187 (429) T COG0172 118 DEDDNVEVRRWGEPPVF----------VFDFEPKDHVELGEKLGLLDFERAAKVSGSRFYFYKGKGARLERALIQFMLDL 187 (429) T ss_pred CCCCCEEEEEEECCCCC----------CCCCCCCHHHHHHHHCCCCHHHHHCCCCCCCEEEECCHHHHHHHHHHHHHHHH T ss_conf 86565488997337654----------44678530998765427624566502078743898077899999999999999 Q ss_pred HHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCEEEECCCCHHHHHHHHHHCCCCHHHCCHHHHHH Q ss_conf 87689638555432443100011210012555420100145677782377434312577776520122223104320001 Q gi|254781004|r 286 KIKDDYEEINTPQVLDQHLWQQSGHWDSYRANMFAVKCADDTIKDLRTFALKPMNCPGHVAVFNHGLKSYRELPVRLAEF 365 (652) Q Consensus 286 ~~~~G~~eV~tP~l~~~~Lw~~SGh~~~y~~~mf~~~~~~~~~~~~~~~~LkPmncp~h~~i~~~~~~SYrdLPlrl~e~ 365 (652) T Consensus 188 ~~~~Gf~e~~~P~lv~~e~m~gtgqlpkf~e~~y~v~~--------~~~~LipTaEvpl~~l~~~Eil~~~~LP~k~~~~ 259 (429) T COG0172 188 HTKHGFTEVLPPYLVNLESMFGTGQLPKFEEDLYKVED--------PDLYLIPTAEVPLTNLHRDEILDEEDLPIKYTAY 259 (429) T ss_pred HHHCCCEEEECCEEECHHHHHCCCCCCCCCCCCEEECC--------CCEEEEECCHHHHHHHHCCCCCCCCCCCEEEEEE T ss_conf 98769658657606059886223789888012158458--------9879970202156786516201521278026787 Q ss_pred EEEECCCCCC---CCEEEEECCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCHHHHH Q ss_conf 0001278764---5200010563533442101053767887899999988766552133210001465311258603577 Q gi|254781004|r 366 GSVYRNEPSG---SLHGLMRVRGFTQDDAHVFCTKEQMFNECLKIHNLIISIYKDFGFEKIMVKLSTRPEKRVGSDALWD 442 (652) Q Consensus 366 ~~~~R~E~sg---~l~GL~R~ReF~~~Dah~F~~~eq~~~e~~~~~~~~~~v~~~~g~~~~~~~ls~~~~~~~g~~~~~~ 442 (652) T Consensus 260 S~cFR~EAGs~GrdtrGliRvHQF~KVE~v~~~~Pe~S~~~~E~m~~~ae~il~~LeLPyRvv~lctGDlgf~a~kk--- 336 (429) T COG0172 260 SPCFRSEAGSAGKDTRGLIRVHQFDKVELVVITKPEESEEELEEMLGNAEEVLQELELPYRVVNLCTGDLGFSAAKK--- 336 (429) T ss_pred CHHHHCCCCCCCCCCCCEEEEEEEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCC--- T ss_conf 72542145656643553014664355899997070116999999999999999970898368432567768864673--- Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCHHHHCCCCCCCEEEE-ECCCEEEEE Q ss_conf 8999999999850212125667520555555455432110021103310012110111022346741673-179721379 Q gi|254781004|r 443 DAENIMKGVLDTIKNSSQDRINTGVLLGEGAFYGPKFEYILKDAIGRDWQCGTIQVDFNLPSRFNAFYVN-SHSEKCHPV 521 (652) Q Consensus 443 ~ae~~l~~~l~~~~~~~~~~~~~~~~~g~~afygpkid~~~~d~~gr~~~~~tiq~df~~p~~f~l~y~~-~dg~~~~pv 521 (652) T Consensus 337 ------------------YDlE-vWlP~q~~y-------------rEisScSn-c~DfQ-aRR~~~Ryr~~~~~k~~~v- 381 (429) T COG0172 337 ------------------YDLE-VWLPGQNKY-------------REISSCSN-CTDFQ-ARRLNIRYRDKEEGKREFV- 381 (429) T ss_pred ------------------EEEE-EEECCCCCC-------------EEEEEEEC-CCCHH-HHHHHCCCCCCCCCCCEEE- T ss_conf ------------------2379-985377874-------------02124434-54288-8987540563657996699- Q ss_pred EEEECCCHH---HHHHHHHHHHHHC---C--CCCCCCCCE Q ss_conf 964034103---7899999999738---7--088733780 Q gi|254781004|r 522 MIHRAVFGS---IERFIGIMIENFK---G--NLPLWLSPI 553 (652) Q Consensus 522 mihr~~~Gs---~eR~ia~liE~~~---g--~~P~wLAP~ 553 (652) T Consensus 382 --h-TLNGsglA~~R~l~AilENyq~~dG~v~IPevL~~y 418 (429) T COG0172 382 --H-TLNGSGLAVGRTLVAILENYQQEDGSVKIPEVLRPY 418 (429) T ss_pred --E-ECCCHHHHHHHHHHHHHHCCCCCCCCEECCHHHHHH T ss_conf --9-546427799999999997153789986344788732 |
|
| >KOG2509 consensus | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.8e-14 Score=118.35 Aligned_cols=294 Identities=18% Similarity=0.256 Sum_probs=208.7 Q ss_pred CCCCCCEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECC---C-CCCEEEEECCHHHHHHHHHHHHHH Q ss_conf 775642068999998379889999999999753200887541144044226---7-874356501078999999999998 Q gi|254781004|r 210 GDSNRPMLSRIYGTAWNTQQELTQYLYFLEESEKRDHRKLAREMDLFHIAE---D-GSGVIFWHRKGWKIFQTLISYMRR 285 (652) Q Consensus 210 gd~~~~~l~Riyg~af~~~~~l~~~~~~~eea~~rdHr~lg~~~~lf~~~~---~-~~G~~~wlP~G~~i~~~ie~~ir~ 285 (652) T Consensus 131 ~ee~~~~v~~~~~~~~~~~-------------~~~~~~~l~~~~~~~~~~~~a~vsG~r~Yyl~g~~a~LeqALi~yal~ 197 (455) T KOG2509 131 NEEQANVVQRVGGPLEFEF-------------KLSHHDELVRALGFIDLERGAKVSGHRGYYLKGAGAFLEQALINYALD 197 (455) T ss_pred CHHHHHHHHHHCCCCCCCC-------------CCCCHHHHHHHCCCCCCCCHHHCCCCCCEEECCHHHHHHHHHHHHHHH T ss_conf 3235268888638753024-------------665388999860663400010014665158757799999999999999 Q ss_pred -HHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCEEEECCCCHHHHHHHHHHCCCCHHHCCHHHHH Q ss_conf -8768963855543244310001121001255542010014567778237743431257777652012222310432000 Q gi|254781004|r 286 -KIKDDYEEINTPQVLDQHLWQQSGHWDSYRANMFAVKCADDTIKDLRTFALKPMNCPGHVAVFNHGLKSYRELPVRLAE 364 (652) Q Consensus 286 -~~~~G~~eV~tP~l~~~~Lw~~SGh~~~y~~~mf~~~~~~~~~~~~~~~~LkPmncp~h~~i~~~~~~SYrdLPlrl~e 364 (652) T Consensus 198 ~l~~kGy~pl~~P~i~rkeVm~~cg~~~~~d~~~~y~ld-----~~-~~~~LiaTaE~plAa~~~~e~~~~~~lPiK~vg 271 (455) T KOG2509 198 FLNAKGYTPLTTPDILRKEVMQKCGQLPRFDEEQYYVLD-----GG-DEKYLIATAEQPLAAYHRDEWLEEDQLPIKYVG 271 (455) T ss_pred HHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEC-----CC-CCCEEEEECCCHHHHHHCCCCCCCCCCCEEEEE T ss_conf 999769824668145369999985657678832178606-----88-642267621110666503640361127601343 Q ss_pred HEEEECCCC-CC--CCEEEEECCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCHHHH Q ss_conf 100012787-64--520001056353344210105376788789999998876655213321000146531125860357 Q gi|254781004|r 365 FGSVYRNEP-SG--SLHGLMRVRGFTQDDAHVFCTKEQMFNECLKIHNLIISIYKDFGFEKIMVKLSTRPEKRVGSDALW 441 (652) Q Consensus 365 ~~~~~R~E~-sg--~l~GL~R~ReF~~~Dah~F~~~eq~~~e~~~~~~~~~~v~~~~g~~~~~~~ls~~~~~~~g~~~~~ 441 (652) T Consensus 272 ~S~CfR~EaGs~G~d~~GlyRVHqF~KVE~Fvit~Pe~S~~~~eEmi~~~eef~qsLgip~rvl~m~S~e---Lg~aAa- 347 (455) T KOG2509 272 VSRCFRAEAGSHGKDTKGLYRVHQFEKVEQFVITGPEDSWEMLEEMINNQEEFYQSLGLPYRVLNMPSGE---LGAAAA- 347 (455) T ss_pred HHHHHHHHHHHCCCCCCCCEEEEEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCHH---HCCHHH- T ss_conf 0378887760046545551466520025788865853569999999999999999809960673477423---376777- Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCHHHHCCCCCCCEEE---EECCCEE Q ss_conf 7899999999985021212566752055555545543211002110331001211011102234674167---3179721 Q gi|254781004|r 442 DDAENIMKGVLDTIKNSSQDRINTGVLLGEGAFYGPKFEYILKDAIGRDWQCGTIQVDFNLPSRFNAFYV---NSHSEKC 518 (652) Q Consensus 442 ~~ae~~l~~~l~~~~~~~~~~~~~~~~~g~~afygpkid~~~~d~~gr~~~~~tiq~df~~p~~f~l~y~---~~dg~~~ 518 (652) T Consensus 348 -------------k----KyDiE-AWmPgrg~yg--------------El~ScSNCTDyQ-SRRL~IRy~~~k~~~~~~~ 394 (455) T KOG2509 348 -------------K----KYDIE-AWMPGRGAYG--------------ELVSCSNCTDYQ-SRRLGIRYGQKKTNDGEKK 394 (455) T ss_pred -------------H----HCCHH-HHCCCCCCCC--------------CCCCCCCCHHHH-HHHHHHHCCCCCCCCCCCC T ss_conf -------------5----12666-5267655323--------------301014652577-7654202052324677541 Q ss_pred EEEEEEECCCHHHHHHHHHHHHHH----CCCCCCCCCCEEEE--EEEC Q ss_conf 379964034103789999999973----87088733780899--9857 Q gi|254781004|r 519 HPVMIHRAVFGSIERFIGIMIENF----KGNLPLWLSPIQAI--VTTI 560 (652) Q Consensus 519 ~pvmihr~~~Gs~eR~ia~liE~~----~g~~P~wLAP~QV~--Iipi 560 (652) T Consensus 395 yvHtLN~Ta-cA~~R~l~aiLEnyQ~edGi~VPe~Lr~ym~~~~~ip~ 441 (455) T KOG2509 395 YVHTLNGTA-CATPRALCAILENYQTEDGIEVPEVLRPYMGGQEFIPF 441 (455) T ss_pred EEEECCHHH-HHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCCCCC T ss_conf 554304066-76467887767534677881677767740688640212 |
|
| >PRK12292 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.2e-13 Score=111.10 Aligned_cols=320 Identities=16% Similarity=0.171 Sum_probs=179.7 Q ss_pred CCCCEEEEECCHHHHHHHHHHHHHHHH-HCCCEEEECCCCCCCCCCCC-CCCCCCCCCCCCEEECCCCCCCCCCEEEECC Q ss_conf 787435650107899999999999887-68963855543244310001-1210012555420100145677782377434 Q gi|254781004|r 261 DGSGVIFWHRKGWKIFQTLISYMRRKI-KDDYEEINTPQVLDQHLWQQ-SGHWDSYRANMFAVKCADDTIKDLRTFALKP 338 (652) Q Consensus 261 ~~~G~~~wlP~G~~i~~~ie~~ir~~~-~~G~~eV~tP~l~~~~Lw~~-SGh~~~y~~~mf~~~~~~~~~~~~~~~~LkP 338 (652) T Consensus 5 ~P~G~~D~lp~e~~~~~~i~~~~~~~f~~~Gy~~I~tP~lE~~e~f~~~~g~--~~~~~~~~f~D----~~~Gr~l~LRp 78 (388) T PRK12292 5 LPEGIRDLLPEEARKIEEIRRRLLDVFRLWGYEEVITPTLEYLDTLLTGGGA--DLDLRTFKLVD----QLSGRTLGLRP 78 (388) T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHCCCCCC--CCCHHEEEEEE----CCCCCEEEECC T ss_conf 9999866799999999999999999999879967357660629885445775--02110489982----69997898568 Q ss_pred CCHHHHHHHHHHCCCCHHHCCHHHHHHEEEECCCCCCCCEEEEECCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 31257777652012222310432000100012787645200010563533442101053767887899999988766552 Q gi|254781004|r 339 MNCPGHVAVFNHGLKSYRELPVRLAEFGSVYRNEPSGSLHGLMRVRGFTQDDAHVFCTKEQMFNECLKIHNLIISIYKDF 418 (652) Q Consensus 339 mncp~h~~i~~~~~~SYrdLPlrl~e~~~~~R~E~sg~l~GL~R~ReF~~~Dah~F~~~eq~~~e~~~~~~~~~~v~~~~ 418 (652) T Consensus 79 D~T~~iaR~~~~~~~~-~~~p~r~~Y~g~vfR~e~pq--~--Gr~REf~Q~G~EiiG~~~-~~-aDaEvI~l~~~~l~~l 151 (388) T PRK12292 79 DMTPQIARIAATRLAN-RPGPLRLCYAGNVFRAQPRG--L--GRSREFLQSGVELIGDAG-IE-ADAEVLSLLLDALKAL 151 (388) T ss_pred CCCHHHHHHHHHHHHC-CCCCEEEEEEEEEEEECCCC--C--CCCCEEEECCEEEECCCC-HH-HHHHHHHHHHHHHHHC T ss_conf 7719999999973104-67876899852268705898--9--961023425755317888-89-9999999999999976 Q ss_pred CCCCCEECCCCCCCC-----CCC-CHHHHHHHHHHHHHHHHHHCCCCCCCC--C-----------------CCCCCCCCC Q ss_conf 133210001465311-----258-603577899999999985021212566--7-----------------520555555 Q gi|254781004|r 419 GFEKIMVKLSTRPEK-----RVG-SDALWDDAENIMKGVLDTIKNSSQDRI--N-----------------TGVLLGEGA 473 (652) Q Consensus 419 g~~~~~~~ls~~~~~-----~~g-~~~~~~~ae~~l~~~l~~~~~~~~~~~--~-----------------~~~~~g~~a 473 (652) T Consensus 152 gl~~~~i~i~~~~i~~~ll~~~~~~~~~~----~~l~~~l~~kd~~~l~~l~~~~~~~~~l~~l~~l~g~~~~~~~~~~~ 227 (388) T PRK12292 152 GLPNFTLDLGHVGLFRALLAALGLPEELE----EALRTALANKDYVALEELDLPEELRARLLALPRLRGGPEVLLEARKL 227 (388) T ss_pred CCCCEEEEECCHHHHHHHHHHCCCCHHHH----HHHHHHHHHHCHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH T ss_conf 99864999778889999999839999999----99999998748666876399999999999887745999999999976 Q ss_pred CCCCCC----C-C-CHHHHCCCCCCCCCCCHHHHCC--------CCCCCEEEEEC-----------------CCEEEEEE Q ss_conf 455432----1-1-0021103310012110111022--------34674167317-----------------97213799 Q gi|254781004|r 474 FYGPKF----E-Y-ILKDAIGRDWQCGTIQVDFNLP--------SRFNAFYVNSH-----------------SEKCHPVM 522 (652) Q Consensus 474 fygpki----d-~-~~~d~~gr~~~~~tiq~df~~p--------~~f~l~y~~~d-----------------g~~~~pvm 522 (652) T Consensus 228 ~~~~~~~~~l~~l~~l~~~l~~~~~~~~i~iD~~lvRGldYYTG~vFE~-~~~~~~~~i~gGGRYD~L~~~fG~~-~PAv 305 (388) T PRK12292 228 LPGSPAKRALDELKALAEALEKAGYGIYLQLDLGLLRHYDYYTGIVFQG-YVDGVGNPIARGGRYDDLGGRFGRA-RPAT 305 (388) T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHCCCCCCCCCEEEEE-EECCCCCEECCCCCHHHHHHHHCCC-CCEE T ss_conf 6795568999999999999984499964720400035766656439999-9189888250575664799983899-9715 Q ss_pred EEECCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHH-HC Q ss_conf 64034103789999999973870887337808999857966899999999999987988999758966367666554-34 Q gi|254781004|r 523 IHRAVFGSIERFIGIMIENFKGNLPLWLSPIQAIVTTITSSAVEYAQEIANLLKSHHLSIETDFRNETINYKIREHS-IK 601 (652) Q Consensus 523 ihr~~~Gs~eR~ia~liE~~~g~~P~wLAP~QV~Iipi~e~~~eya~~i~~~L~~~girV~~Ddr~~~~G~Kir~a~-l~ 601 (652) T Consensus 306 ---Gfa~g~eRl~~~l~~~~-------~~~~~~~~v~~~~~~~~~a~~~a~~LR~~G~~v~~~l~~~~~~~~~~~~~~~~ 375 (388) T PRK12292 306 ---GFSLDLDRLRELLPEEE-------ERKQKDLLILAPWERLEAALAAAQALRKKGEIVVLALPGHDDAEAEAADRQLV 375 (388) T ss_pred ---EEEECHHHHHHHHHHCC-------CCCCCEEEEECCHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHH T ss_conf ---89963999999864205-------67886799985867699999999999977988999899998688988779986 Q ss_pred CCCEEEEE Q ss_conf 89889998 Q gi|254781004|r 602 KIPIIIIC 609 (652) Q Consensus 602 giP~~ivI 609 (652) T Consensus 376 ~~~~~w~~ 383 (388) T PRK12292 376 CREGVWVV 383 (388) T ss_pred HCCCCEEE T ss_conf 15881899 |
|
| >COG0442 ProS Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.2e-15 Score=124.03 Aligned_cols=240 Identities=20% Similarity=0.205 Sum_probs=165.9 Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCC----------------CCCHHHHHHHHHHHHHHHHHHCCC-CCC Q ss_conf 678878999999887665521332100014653112----------------586035778999999999850212-125 Q gi|254781004|r 399 QMFNECLKIHNLIISIYKDFGFEKIMVKLSTRPEKR----------------VGSDALWDDAENIMKGVLDTIKNS-SQD 461 (652) Q Consensus 399 q~~~e~~~~~~~~~~v~~~~g~~~~~~~ls~~~~~~----------------~g~~~~~~~ae~~l~~~l~~~~~~-~~~ 461 (652) T Consensus 109 TsEe~it~~~~~~i~SYkdLPl~lYQi~~kfRdE~rpr~gllR~REF~mkdaySfh~~~e~a~~~y~~~~~~Y~~if~~i 188 (500) T COG0442 109 TSEEVITDMFRKWIRSYKDLPLKLYQIQSKFRDEKRPRFGLLRGREFLMKDAYSFHADEEDAEETYEKMLDAYSRIFLRL 188 (500) T ss_pred CCHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCCHHEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHC T ss_conf 86899999999986556518812101345884334688773000203301112102898999999999999999999858 Q ss_pred CCCCCCCCCCCCCCCCCC--CCCHHHHCCCCCCCCCCC-HHHHCCCCC-CCEEEEEC-CCEEEEEEEEECCCHHHHHHHH Q ss_conf 667520555555455432--110021103310012110-111022346-74167317-9721379964034103789999 Q gi|254781004|r 462 RINTGVLLGEGAFYGPKF--EYILKDAIGRDWQCGTIQ-VDFNLPSRF-NAFYVNSH-SEKCHPVMIHRAVFGSIERFIG 536 (652) Q Consensus 462 ~~~~~~~~g~~afygpki--d~~~~d~~gr~~~~~tiq-~df~~p~~f-~l~y~~~d-g~~~~pvmihr~~~Gs~eR~ia 536 (652) T Consensus 189 ~l~~~~~~ad~g~~Gg~~S~eF~~l~pd~ge~qi~ts~~y~aN~e~a~~~~~~~~~~~~~~~---~v~t~s~~~s~r~~~ 265 (500) T COG0442 189 PLIFGPVPADEGFIGGSYSHEFEALMPDGGEDQIATSHHYGANFEKAFIDIKFEDEEEGELE---YVHTTSYGISTRIIG 265 (500) T ss_pred CCEEEEECCCCCCCCCCCCEEEEEECCCCCCCEEEEECCHHHHHHHHCCCCCCCCCCCCCCE---EECCCCEEEEEEEEE T ss_conf 95388625667788876536999985689854799806266668774467775566655414---751462688740015 Q ss_pred HHHHHHC----CCCCCCCCCEEEEEEECC-------HHHHHHHHHHHHHHHHCCCEEEEECC-CCCCCHHHHHHHHCCCC Q ss_conf 9999738----708873378089998579-------66899999999999987988999758-96636766655434898 Q gi|254781004|r 537 IMIENFK----GNLPLWLSPIQAIVTTIT-------SSAVEYAQEIANLLKSHHLSIETDFR-NETINYKIREHSIKKIP 604 (652) Q Consensus 537 ~liE~~~----g~~P~wLAP~QV~Iipi~-------e~~~eya~~i~~~L~~~girV~~Ddr-~~~~G~Kir~a~l~giP 604 (652) T Consensus 266 ~~i~i~GDn~G~v~Pp~vA~~qV~~~~~~~~ga~~h~~~~~~~rd~~~~l~~~~~~~~~D~~~~~~~G~kl~~~e~ieVg 345 (500) T COG0442 266 AAILIHGDNEGLVLPPIVADIQVVIVPIFIKGANEHYKVVNYGRDVAEPLEKLGIRVEGDDRSPDGPGFKLNIWEGIEVG 345 (500) T ss_pred EEEEEECCCCCCCCCCHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCCCCEEEEEECCCCC T ss_conf 89997148877648750045348997513367410133430454445665430258842456899997211021024457 Q ss_pred EEEEECHHHHHCCCEEEEECCCCC--EEEECHHHHHHHH Q ss_conf 899987425325818999889886--6334299999999 Q gi|254781004|r 605 IIIICGDKEASERSIGIRRFGSTT--TQKVSLLDAIPIL 641 (652) Q Consensus 605 ~~ivIG~ke~e~~~Vtir~R~~~~--~~~i~lee~i~~l 641 (652) T Consensus 346 hif~lG~kyse~~~a~v~~r~g~~~~~~mg~ygigvsr~ 384 (500) T COG0442 346 HIFELGTKYSEAMNATVLDRDGKEQPKTMGCYGIGVSRL 384 (500) T ss_pred EEEEECCHHHHHCEEEEEECCCCCCCEEEECHHHHHHHH T ss_conf 799987412541804999248871441787000003459 |
|
| >PRK00252 alaS alanyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=99.59 E-value=4.9e-14 Score=116.68 Aligned_cols=135 Identities=26% Similarity=0.483 Sum_probs=106.0 Q ss_pred HHHHHHHHHHHHHHHHHCCCCEE-EEECCC-CCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHH Q ss_conf 99998999999999997799889-972435-8855788408888889899999999999996699804853276785445 Q gi|254781004|r 72 VIRHSCAHIMAEAVQSIWPEVQV-AIGPII-EDGFYYDFDKEQPFSSDELAQIEKKMQEIIARDSPFLKQYLSHEKAREL 149 (652) Q Consensus 72 i~~hS~ahlL~~Av~~l~p~~kl-~igp~i-~~GfYyD~~~~~~it~~dl~~Ie~~M~~ii~~~~pi~r~~vs~~eA~~~ 149 (652) T Consensus 550 ~~nHTatHlL~~alr~vlG~-hv~Q~GS~v~~~~lrfDfsh~~~lt~eel~~iE~~vN~~I~~n~~V~~~~~~~~eA~~~ 628 (864) T PRK00252 550 ARNHSATHLLHAALRQVLGE-HVTQKGSLVAPDRLRFDFSHFEALTPEELRQVEDLVNEQIRENLPVETEEMDIEEAKKM 628 (864) T ss_pred HHHCHHHHHHHHHHHHHHCC-CEEECCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHH T ss_conf 86357999999999998487-70866633577607997316888999999999999999999679658985698999752 Q ss_pred H--HHCCCHHHHHHHHHCCCCCCCEEECCCCC-EEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEE Q ss_conf 4--41671135566542034554213025752-0100023552144422233333321110157756420689999983 Q gi|254781004|r 150 F--ESKKEAYKVEILESIPAKENVTLYRQGEW-FDLCRGPHVRSTGQVKKFFKLMKVAGAYWRGDSNRPMLSRIYGTAW 225 (652) Q Consensus 150 F--~~~~~~~K~~li~~~~~~~~v~~y~~g~~-~Dlc~GphvpsTg~ik~~fkL~~~sgayw~gd~~~~~l~Riyg~af 225 (652) T Consensus 629 ga~alfgekY----------~d~VRVV~ig~~s~ElCGGTHv~~TgeIg~-~kI~~e~~i-------~~GvrRIeavtG 689 (864) T PRK00252 629 GAMALFGEKY----------GDEVRVVSMGDFSIELCGGTHVSNTGDIGL-FKIVSESGV-------AAGVRRIEAVTG 689 (864) T ss_pred CHHHHCCCCC----------CCEEEEEEECCEEEECCCCCCCCCCCEEEE-EEEEEECCC-------CCCCEEEEEEEC T ss_conf 3121014214----------880699998992685678988997052354-999984563-------588179999715 |
|
| >PRK13902 alaS lanyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=9.2e-14 Score=114.80 Aligned_cols=148 Identities=19% Similarity=0.397 Sum_probs=110.4 Q ss_pred HHHHHHHHHHHHHHHHCCCCEE-EEECCC-CCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHH Q ss_conf 9998999999999997799889-972435-88557884088888898999999999999966998048532767854454 Q gi|254781004|r 73 IRHSCAHIMAEAVQSIWPEVQV-AIGPII-EDGFYYDFDKEQPFSSDELAQIEKKMQEIIARDSPFLKQYLSHEKARELF 150 (652) Q Consensus 73 ~~hS~ahlL~~Av~~l~p~~kl-~igp~i-~~GfYyD~~~~~~it~~dl~~Ie~~M~~ii~~~~pi~r~~vs~~eA~~~F 150 (652) T Consensus 591 ~nHTaTHlL~~alr~vLG~-hv~Q~Gs~v~~~~lRfDfsh~~~lt~eel~~IE~~vN~~I~~n~~V~~~~~~~~eA~~~~ 669 (898) T PRK13902 591 RHHTATHILLAAARKVLGD-HVWQAGAQKDTDKARLDITHYKRITREEVKEIERLANRIVMENRPVKVEWMDRNEAEQKY 669 (898) T ss_pred HHHHHHHHHHHHHHHHHCC-CEEECCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHC T ss_conf 6003888877999987277-568403233798089962488878989999999999999984896279994789997615 Q ss_pred HHCCCHHHHHHHH-HCCCCCCCEEECCCCC-EEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEECCH Q ss_conf 4167113556654-2034554213025752-0100023552144422233333321110157756420689999983798 Q gi|254781004|r 151 ESKKEAYKVEILE-SIPAKENVTLYRQGEW-FDLCRGPHVRSTGQVKKFFKLMKVAGAYWRGDSNRPMLSRIYGTAWNTQ 228 (652) Q Consensus 151 ~~~~~~~K~~li~-~~~~~~~v~~y~~g~~-~Dlc~GphvpsTg~ik~~fkL~~~sgayw~gd~~~~~l~Riyg~af~~~ 228 (652) T Consensus 670 a~-------alf~gG~kygd~VRVV~ig~~s~ElCGGTHV~nTgeIG~-fkIise~si-------~~GVRRIEavtG~-- 732 (898) T PRK13902 670 GF-------RLYQGGVVPGKEIRVVEIEGWDVEACGGTHVKNTGEIGP-IKILKTERI-------QDGVERLEFAAGD-- 732 (898) T ss_pred CH-------HHHCCCCCCCCCEEEEEECCCEEECCCCCCCCCCCCEEE-EEEEEECCE-------ECCCEEEEEEECH-- T ss_conf 40-------332278788873589865780365237987787031343-899985526-------3781699998078-- Q ss_pred HHHHHHHHHHH Q ss_conf 89999999999 Q gi|254781004|r 229 QELTQYLYFLE 239 (652) Q Consensus 229 ~~l~~~~~~~e 239 (652) T Consensus 733 -~A~~~~~~~~ 742 (898) T PRK13902 733 -AAVEYIQELE 742 (898) T ss_pred -HHHHHHHHHH T ss_conf -9999999999 |
|
| >PRK01584 alanyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=6.4e-14 Score=115.88 Aligned_cols=132 Identities=26% Similarity=0.443 Sum_probs=105.4 Q ss_pred HHHHHHHHHHHHHHCCCCEEEEECCC-CCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH-- Q ss_conf 98999999999997799889972435-885578840888888989999999999999669980485327678544544-- Q gi|254781004|r 75 HSCAHIMAEAVQSIWPEVQVAIGPII-EDGFYYDFDKEQPFSSDELAQIEKKMQEIIARDSPFLKQYLSHEKARELFE-- 151 (652) Q Consensus 75 hS~ahlL~~Av~~l~p~~kl~igp~i-~~GfYyD~~~~~~it~~dl~~Ie~~M~~ii~~~~pi~r~~vs~~eA~~~F~-- 151 (652) T Consensus 456 HTATHLLh~ALR~VLG~hV~Q~GS~v~~~~lRfDfth~~~lt~eei~~IE~~vN~~I~~~~~V~~~~~~~~eA~~~ga~a 535 (593) T PRK01584 456 HTATHLLHKALQLVLGDHVRQKGSNITAERLRFDFSHPRKMTDDEIKKVEDIVNLQIKNDLSVKKEVMSLEEAKEKGAMA 535 (593) T ss_pred CHHHHHHHHHHHHHCCCCEEECCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHCCCEE T ss_conf 54899999999986287559878545798179996279999999999999999999983896259982499999749926 Q ss_pred HCCCHHHHHHHHHCCCCCCCEEECCCCC-EEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEE Q ss_conf 1671135566542034554213025752-010002355214442223333332111015775642068999998 Q gi|254781004|r 152 SKKEAYKVEILESIPAKENVTLYRQGEW-FDLCRGPHVRSTGQVKKFFKLMKVAGAYWRGDSNRPMLSRIYGTA 224 (652) Q Consensus 152 ~~~~~~K~~li~~~~~~~~v~~y~~g~~-~Dlc~GphvpsTg~ik~~fkL~~~sgayw~gd~~~~~l~Riyg~a 224 (652) T Consensus 536 lfgekY----------~d~VRVv~i~~~S~ElCGGTHv~~TgeIg~-fkI~~e~si-----~--~GvrRIeAvt 591 (593) T PRK01584 536 LFGEKY----------EDVVSVYEIDGFSIEVCGGPHVENTSELGT-FKIQKEQSS-----S--SGVRRIKAIL 591 (593) T ss_pred ECCCCC----------CCEEEEEEECCEEEECCCCCCCCCHHHCCC-EEEEEECCC-----C--CCCEEEEEEE T ss_conf 228999----------986689988996786578613387733446-799976766-----0--7847899981 |
|
| >COG2872 Predicted metal-dependent hydrolases related to alanyl-tRNA synthetase HxxxH domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.7e-09 Score=85.34 Aligned_cols=138 Identities=24% Similarity=0.389 Sum_probs=104.0 Q ss_pred HHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHH Q ss_conf 99999899999999999779988997243588557884088888898999999999999966998048532767854454 Q gi|254781004|r 71 AVIRHSCAHIMAEAVQSIWPEVQVAIGPIIEDGFYYDFDKEQPFSSDELAQIEKKMQEIIARDSPFLKQYLSHEKARELF 150 (652) Q Consensus 71 ~i~~hS~ahlL~~Av~~l~p~~kl~igp~i~~GfYyD~~~~~~it~~dl~~Ie~~M~~ii~~~~pi~r~~vs~~eA~~~F 150 (652) T Consensus 95 ~mr~HTa~Hlls~~~~~~~~-~~~~g~~i~~d~~~iD~~~e~--~~~~~~~v~~~~ne~v~~~~~v~~~~i~~EE~~~~p 171 (241) T COG2872 95 HMRMHTALHLLSAVLYKVYG-ALTTGFEIGEDYARIDFDGED--TEDEIEEVEALANELVKENLPVIIYFIPREEAEKLP 171 (241) T ss_pred HHHHHHHHHHHHHHHHCCCC-CEEECCEECCCCCCCCCCCCC--CHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHCC T ss_conf 87560799999987501246-313112003663020246663--055699999999899875973024552789986484 Q ss_pred HHCCCHHHHHHHHHCCCCC-CCEEECCCCC-EEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEE Q ss_conf 4167113556654203455-4213025752-010002355214442223333332111015775642068999998 Q gi|254781004|r 151 ESKKEAYKVEILESIPAKE-NVTLYRQGEW-FDLCRGPHVRSTGQVKKFFKLMKVAGAYWRGDSNRPMLSRIYGTA 224 (652) Q Consensus 151 ~~~~~~~K~~li~~~~~~~-~v~~y~~g~~-~Dlc~GphvpsTg~ik~~fkL~~~sgayw~gd~~~~~l~Riyg~a 224 (652) T Consensus 172 ~~~~--~~~---~~~~~~~g~iRiV~I~did~qpCgGtHVk~T~EIG~-Iki~k~e-------~k~k~~~Rv~f~~ 234 (241) T COG2872 172 GLVK--LKN---KVPPDVEGKIRIVEIGDIDVQPCGGTHVKNTGEIGE-IKILKTE-------KKGKGNRRVYFTL 234 (241) T ss_pred CHHH--HCC---CCCCCCCCEEEEEEECCEECCCCCCCCCCCCCEEEE-EEEEEEE-------EECCCEEEEEEEE T ss_conf 7102--324---588655651899998990316788852288620677-9999999-------8057248999993 |
|
| >TIGR00344 alaS alanyl-tRNA synthetase; InterPro: IPR002318 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=97.94 E-value=3.3e-05 Score=55.77 Aligned_cols=141 Identities=21% Similarity=0.399 Sum_probs=107.3 Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCC-CCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCE Q ss_conf 0798628999999999998999999999997799889972435-885578840888888989999999999999669980 Q gi|254781004|r 58 SIEIITPEDPRSLAVIRHSCAHIMAEAVQSIWPEVQVAIGPII-EDGFYYDFDKEQPFSSDELAQIEKKMQEIIARDSPF 136 (652) Q Consensus 58 ~i~~i~~~~~eg~~i~~hS~ahlL~~Av~~l~p~~kl~igp~i-~~GfYyD~~~~~~it~~dl~~Ie~~M~~ii~~~~pi 136 (652) T Consensus 583 ~~~~~~~~~~~~~~~~~h~~~h~~~~~~~~~~g~~~~~~g~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 662 (914) T TIGR00344 583 KVTAVVDEKRRLRLKRNHTATHLLHAALKKVLGPHVWQAGSLVSAKKLRFDFSHPRALTKEELEEVEDLVNEQILANLPV 662 (914) T ss_pred EEEEEECHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC T ss_conf 14553104566655520037899999999864112221012000013210010000267778999999999998752250 Q ss_pred EEEECCHHHHHHHHHHCCCHHHHHHHHHCCCCCCCEEECCCC------CEEECCCCCCCHHHHHHHHHHHHHHHH Q ss_conf 485327678544544167113556654203455421302575------201000235521444222333333211 Q gi|254781004|r 137 LKQYLSHEKARELFESKKEAYKVEILESIPAKENVTLYRQGE------WFDLCRGPHVRSTGQVKKFFKLMKVAG 205 (652) Q Consensus 137 ~r~~vs~~eA~~~F~~~~~~~K~~li~~~~~~~~v~~y~~g~------~~Dlc~GphvpsTg~ik~~fkL~~~sg 205 (652) T Consensus 663 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~cgg~h~~~~g~~g-~~~~~~~~~ 730 (914) T TIGR00344 663 KVEFLDLDEAKAKGALALFGE------GYGPGEKVRVVSVGDPNGELYSVELCGGTHVENTGDIG-LFKILKESG 730 (914) T ss_pred HHHHHCHHHHHHHHHHHHCCC------CCCCCCEEEEEECCCCCCCEEEEEECCCCCCCCCCCCC-EEEEEEHHH T ss_conf 121201344554300110024------45776405788507754210121001563112322200-023321000 |
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases . Alanyl-tRNA synthetase (6.1.1.7 from EC) is an alpha4 tetramer that belongs to class IIc. ; GO: 0004813 alanine-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006419 alanyl-tRNA aminoacylation, 0005737 cytoplasm. |
| >KOG2105 consensus | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.018 Score=36.92 Aligned_cols=145 Identities=14% Similarity=0.262 Sum_probs=93.5 Q ss_pred CCEEECCCEEEEECCCCHHHH-HHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECC-CCCCHHHHHHHHHHHH Q ss_conf 745303670798628999999-99999899999999999779988997243588557884088-8888989999999999 Q gi|254781004|r 50 LSDPVREGSIEIITPEDPRSL-AVIRHSCAHIMAEAVQSIWPEVQVAIGPIIEDGFYYDFDKE-QPFSSDELAQIEKKMQ 127 (652) Q Consensus 50 L~~~l~d~~i~~i~~~~~eg~-~i~~hS~ahlL~~Av~~l~p~~kl~igp~i~~GfYyD~~~~-~~it~~dl~~Ie~~M~ 127 (652) T Consensus 86 ~~~~iePGt~V~V~VD~qkR~D~MQQHsGQHLitAvad~~fK-lkTt-S-WelG~~~sa~e~~~~~mTaeqvaaieqsvN 162 (415) T KOG2105 86 VNDYIEPGTTVEVAVDEQKRMDYMQQHSGQHLITAVADHLFK-LKTT-S-WELGRFRSAIELDTPSMTAEQVAAIEQSVN 162 (415) T ss_pred CCCCCCCCCEEEEEECHHHHHHHHHHHCCHHHHHHHHHHHHC-CCEE-E-EECCCEEECCCCCCCCCCHHHHHHHHHHHH T ss_conf 378779997699985578774898871322699999976403-2200-3-541451440236888746999987899988 Q ss_pred HHHHCCCCEEEEECCHHH-HHHHHHHCCCHHHHHHHHHCCCCCCCEEECCCC-CEEECCCCCCCHHHHHHHHHHHHHHHH Q ss_conf 999669980485327678-544544167113556654203455421302575-201000235521444222333333211 Q gi|254781004|r 128 EIIARDSPFLKQYLSHEK-ARELFESKKEAYKVEILESIPAKENVTLYRQGE-WFDLCRGPHVRSTGQVKKFFKLMKVAG 205 (652) Q Consensus 128 ~ii~~~~pi~r~~vs~~e-A~~~F~~~~~~~K~~li~~~~~~~~v~~y~~g~-~~Dlc~GphvpsTg~ik~~fkL~~~sg 205 (652) T Consensus 163 e~I~d~~~~~v~E~sl~d~eVeqVS~~~~~D~--------haG~iRvvnI~~vDSN~CCGTHvs~~Sdl~v-I~ILgtek 233 (415) T KOG2105 163 EKIRDRLPVNVRELSLDDPEVEQVSGRGLPDD--------HAGPIRVVNIEGVDSNMCCGTHVSNLSDLQV-IKILGTEK 233 (415) T ss_pred HHHHHCCCHHEEECCCCCCCHHHCCCCCCCCC--------CCCCEEEEEECCCCCCCCCCCCCCCHHHCCE-EEEEECCC T ss_conf 99873243020101159842200268998544--------6686489853575577640012443311535-89840431 Q ss_pred H Q ss_conf 1 Q gi|254781004|r 206 A 206 (652) Q Consensus 206 a 206 (652) T Consensus 234 g 234 (415) T KOG2105 234 G 234 (415) T ss_pred C T ss_conf 3 |
|
| >COG0013 AlaS Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.56 E-value=2e-13 Score=112.52 Aligned_cols=162 Identities=22% Similarity=0.450 Sum_probs=117.0 Q ss_pred HHHH-HHHHHHHHHHHHHHHHCCCCEEEEECCC-CCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCHHHH Q ss_conf 9999-9998999999999997799889972435-8855788408888889899999999999996699804853276785 Q gi|254781004|r 69 SLAV-IRHSCAHIMAEAVQSIWPEVQVAIGPII-EDGFYYDFDKEQPFSSDELAQIEKKMQEIIARDSPFLKQYLSHEKA 146 (652) Q Consensus 69 g~~i-~~hS~ahlL~~Av~~l~p~~kl~igp~i-~~GfYyD~~~~~~it~~dl~~Ie~~M~~ii~~~~pi~r~~vs~~eA 146 (652) T Consensus 560 R~~~~~nHTATHLLh~ALr~VLG~hV~QaGSlv~~~~lRfDfsH~~~it~Eel~~IE~~vNe~I~~n~~V~~~~m~~~eA 639 (879) T COG0013 560 RRRLMRNHTATHLLHAALRKVLGDHVWQAGSLVDPEKLRFDFSHYKALTAEELKEIERLVNEIIRENLPVKTEEMDLDEA 639 (879) T ss_pred HHHHHHHCHHHHHHHHHHHHHHCCCCEECCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCHHHH T ss_conf 99998627699999999999737321206764677706885317888999999999999999998289414897369999 Q ss_pred HHH--HHHCCCHHHHHHHHHCCCCCCCEEECCCCC-EEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEE Q ss_conf 445--441671135566542034554213025752-01000235521444222333333211101577564206899999 Q gi|254781004|r 147 REL--FESKKEAYKVEILESIPAKENVTLYRQGEW-FDLCRGPHVRSTGQVKKFFKLMKVAGAYWRGDSNRPMLSRIYGT 223 (652) Q Consensus 147 ~~~--F~~~~~~~K~~li~~~~~~~~v~~y~~g~~-~Dlc~GphvpsTg~ik~~fkL~~~sgayw~gd~~~~~l~Riyg~ 223 (652) T Consensus 640 k~~Ga~alfGekY---------~-~~VRVV~ig~~SvElCGGTHv~~Tg~IG~-fkI~~e~~i-----~a--GVrRIeav 701 (879) T COG0013 640 KAKGAMALFGEKY---------G-DEVRVVEIGDFSVELCGGTHVSNTGDIGL-FKIISEEGI-----AA--GVRRIEAV 701 (879) T ss_pred HHHCHHHHCCCCC---------C-CEEEEEEECCCEEECCCCCCCCCCCCEEE-EEEEEECCC-----CC--CEEEEEEE T ss_conf 9719296528867---------9-86899998991566137745677565011-799876413-----06--75899998 Q ss_pred EECCHHHHHHHHHHHHHHHHHHHHHHHHHCCE Q ss_conf 83798899999999997532008875411440 Q gi|254781004|r 224 AWNTQQELTQYLYFLEESEKRDHRKLAREMDL 255 (652) Q Consensus 224 af~~~~~l~~~~~~~eea~~rdHr~lg~~~~l 255 (652) T Consensus 702 t--G~~a~-~~~~~~~~----~l~~~a~~lk~ 726 (879) T COG0013 702 T--GEAAL-EYLQEQED----LLKEIASLLKV 726 (879) T ss_pred C--CHHHH-HHHHHHHH----HHHHHHHHHCC T ss_conf 2--78999-99999999----99999998689 |
|
| >KOG0188 consensus | Back alignment and domain information |
|---|
Probab=99.00 E-value=7.6e-09 Score=80.89 Aligned_cols=184 Identities=17% Similarity=0.370 Sum_probs=125.2 Q ss_pred HHH-HHHHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHH Q ss_conf 999-9989999999999977998899724358855788408888889899999999999996699804853276785445 Q gi|254781004|r 71 AVI-RHSCAHIMAEAVQSIWPEVQVAIGPIIEDGFYYDFDKEQPFSSDELAQIEKKMQEIIARDSPFLKQYLSHEKAREL 149 (652) Q Consensus 71 ~i~-~hS~ahlL~~Av~~l~p~~kl~igp~i~~GfYyD~~~~~~it~~dl~~Ie~~M~~ii~~~~pi~r~~vs~~eA~~~ 149 (652) T Consensus 566 ~im~nHTaTHlLN~aLr~~l~~t~QkGSlV~pdklRfDf~~k~~lt~eql~~vE~~~ne~I~~~~~V~~~e~~l~~ak~i 645 (895) T KOG0188 566 LIMRNHTATHLLNFALRQVLKGTDQKGSLVAPDKLRFDFSTKGALTKEQLKKVEDKINEFIQKNAPVYAKELPLAEAKKI 645 (895) T ss_pred HHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHCC T ss_conf 77631409999999999862652456664575670564236777899999999999999986388569886578887327 Q ss_pred HHHCCCHHHHHHHHHCCCCCCCEEECCCC----CEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEE Q ss_conf 44167113556654203455421302575----20100023552144422233333321110157756420689999983 Q gi|254781004|r 150 FESKKEAYKVEILESIPAKENVTLYRQGE----WFDLCRGPHVRSTGQVKKFFKLMKVAGAYWRGDSNRPMLSRIYGTAW 225 (652) Q Consensus 150 F~~~~~~~K~~li~~~~~~~~v~~y~~g~----~~Dlc~GphvpsTg~ik~~fkL~~~sgayw~gd~~~~~l~Riyg~af 225 (652) T Consensus 646 ~glr~v~-----~E~YP--dpVRVVsvg~~~~~svE~CgGTH~~~t~~i~~-fvI~se~~-------iakgirRivavTG 710 (895) T KOG0188 646 PGLRAVF-----DEVYP--DPVRVVSVGAGQLTSVEFCGGTHLTNTSHIGD-FVIVSEEG-------IAKGIRRIVAVTG 710 (895) T ss_pred CCCCCCC-----CCCCC--CCEEEEEECCCCCCCEEECCCCCCCCCCCCCE-EEEECHHH-------HHHCEEEEEEECC T ss_conf 7710025-----77458--86489983366543101027744466555442-89963044-------4105067878336 Q ss_pred CCHHHHHHHHHHHHH-------HHHHHHHHHHHHCCEEEECCCCCCEEEEECCHHHHH Q ss_conf 798899999999997-------532008875411440442267874356501078999 Q gi|254781004|r 226 NTQQELTQYLYFLEE-------SEKRDHRKLAREMDLFHIAEDGSGVIFWHRKGWKIF 276 (652) Q Consensus 226 ~~~~~l~~~~~~~ee-------a~~rdHr~lg~~~~lf~~~~~~~G~~~wlP~G~~i~ 276 (652) T Consensus 711 ~eA~~a~~~a~~~~~~~~~~~~~~~kei~~l~~~~~-------~a~iP~~~k~~~~~~ 761 (895) T KOG0188 711 KEAQEALRLAEDLDKDLRKTDKALEKEIQELGENLD-------HAVIPYWQKDEIREL 761 (895) T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHC-------CCCCHHHHHHHHHHH T ss_conf 889999998887876540265256899999998631-------453507759999999 |
|
| >cd01667 TGS_ThrRS_N TGS _ThrRS_N: ThrRS (threonyl-tRNA Synthetase) is a class II tRNA synthetase that couples threonine to its cognate tRNA | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.3e-14 Score=118.97 Aligned_cols=60 Identities=55% Similarity=0.803 Sum_probs=58.1 Q ss_pred EEEECCCCCEEECCCCCCHHHHHHHHCCCCCCCEEEEEECCEEEECCEEEC-CCEEEEECC Q ss_conf 089928998874189888999998636110112899998988997745303-670798628 Q gi|254781004|r 5 IKLTFPDGSIKNFPVHATGSDVAESISRSLAKKAVAVAINGKVCDLSDPVR-EGSIEIITP 64 (652) Q Consensus 5 i~I~lpDG~~~~~~~g~t~~dia~~i~~~~~~~~vaa~vng~l~dL~~~l~-d~~i~~i~~ 64 (652) T Consensus 1 i~ItlpDgs~~~~~~~~T~~eiA~~i~~~l~k~~vaa~vng~l~DL~~~i~~d~~v~~iT~ 61 (61) T cd01667 1 IKITLPDGSVKEFPKGTTPLDIAKSISPGLAKKAVAAKVNGELVDLSRPLEEDCELEIITF 61 (61) T ss_pred CEEECCCCCEEECCCCCCHHHHHHHHCHHHHCCEEEEEECCEEECCCCCCCCCCEEEEEEC T ss_conf 9898899996887899899999998596634137999999999835741269999999849 |
In addition to its catalytic and anticodon-binding domains, ThrRS has an N-terminal TGS domain, named after the ThrRS, GTPase, and SpoT proteins where it occurs. The TGS domain is thought to interact with the tRNA acceptor arm along with an adjacent N-terminal domain. The specific function of TGS is not well understood. |
| >pfam02824 TGS TGS domain | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.9e-09 Score=85.07 Aligned_cols=59 Identities=31% Similarity=0.528 Sum_probs=55.9 Q ss_pred EEEECCCCCEEECCCCCCHHHHHHHHCCCCCCCEEEEEECCEEEECCEEECC-CEEEEEC Q ss_conf 0899289988741898889999986361101128999989889977453036-7079862 Q gi|254781004|r 5 IKLTFPDGSIKNFPVHATGSDVAESISRSLAKKAVAVAINGKVCDLSDPVRE-GSIEIIT 63 (652) Q Consensus 5 i~I~lpDG~~~~~~~g~t~~dia~~i~~~~~~~~vaa~vng~l~dL~~~l~d-~~i~~i~ 63 (652) T Consensus 1 i~V~tP~G~~~~lp~GaT~~D~A~~Ih~~lg~~~~~A~VnG~~v~l~~~L~~gd~V~IiT 60 (60) T pfam02824 1 IRVYTPDGKVPELPRGSTPEDFAYAIHTDLGKKFIGAKVNGQRVGLDHVLEDGDVVEIVT 60 (60) T ss_pred CEEECCCCCEEECCCCCCHHHHHHHHCHHHHHEEEEEEECCEECCCCCCCCCCCEEEEEC T ss_conf 999899998687899896999998869786411767899988876211248999999879 |
The TGS domain is named after ThrRS, GTPase, and SpoT. Interestingly, TGS domain was detected also at the amino terminus of the uridine kinase from the spirochaete Treponema pallidum (but not any other organism, including the related spirochaete Borrelia burgdorferi). TGS is a small domain that consists of ~50 amino acid residues and is predicted to possess a predominantly beta-sheet structure. There is no direct information on the functions of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role. |
| >cd01616 TGS The TGS domain, named after the ThrRS, GTPase, and SpoT/RelA proteins where it occurs, is structurally similar to ubiquitin | Back alignment and domain information |
|---|
Probab=98.87 E-value=6.5e-09 Score=81.34 Aligned_cols=59 Identities=32% Similarity=0.508 Sum_probs=55.3 Q ss_pred EEEECCCCCEEECCCCCCHHHHHHHHCCCCCCCEEEEEECCEEEECCEEECC-CEEEEEC Q ss_conf 0899289988741898889999986361101128999989889977453036-7079862 Q gi|254781004|r 5 IKLTFPDGSIKNFPVHATGSDVAESISRSLAKKAVAVAINGKVCDLSDPVRE-GSIEIIT 63 (652) Q Consensus 5 i~I~lpDG~~~~~~~g~t~~dia~~i~~~~~~~~vaa~vng~l~dL~~~l~d-~~i~~i~ 63 (652) T Consensus 1 i~vftP~G~~~~lP~GaT~~D~A~~Iht~lg~~~~~a~Vng~~~~l~~~L~~gd~V~IiT 60 (60) T cd01616 1 MIIFTPDGSAVELPKGATAMDFALKIHTDLGKGFIGALVNGQLVDLSYTLQDGDTVSIVT 60 (60) T ss_pred CEEECCCCCEEECCCCCCHHHHHHHHCCCHHHEEEEEEECCEECCCCCCCCCCCEEEEEC T ss_conf 999899998798899898999999876361545999999999965166999999999979 |
TGS is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role. |
| >cd01668 TGS_RelA_SpoT TGS_RelA_SpoT: The RelA (SpoT) protein, also referred to as ppGpp hydrolase/synthetase, is a ribosome-associated protein that is activated during amino acid starvation and thought to mediate the stringent response | Back alignment and domain information |
|---|
Probab=98.22 E-value=2.6e-06 Score=63.44 Aligned_cols=58 Identities=34% Similarity=0.532 Sum_probs=53.2 Q ss_pred EEECCCCCEEECCCCCCHHHHHHHHCCCCCCCEEEEEECCEEEECCEEECCC-EEEEEC Q ss_conf 8992899887418988899999863611011289999898899774530367-079862 Q gi|254781004|r 6 KLTFPDGSIKNFPVHATGSDVAESISRSLAKKAVAVAINGKVCDLSDPVREG-SIEIIT 63 (652) Q Consensus 6 ~I~lpDG~~~~~~~g~t~~dia~~i~~~~~~~~vaa~vng~l~dL~~~l~d~-~i~~i~ 63 (652) T Consensus 2 ~vftP~G~~~~LP~GaT~lDfAy~iht~lG~~~~~a~vNg~~~~l~~~L~~GD~VeIiT 60 (60) T cd01668 2 YVFTPKGEIIELPAGATVLDFAYAIHTEIGNRCVGAKVNGKLVPLSTVLKDGDIVEIIT 60 (60) T ss_pred EEECCCCCEEECCCCCCHHHEHHHHCCCHHHEEEEEEECCEECCCCCCCCCCCEEEEEC T ss_conf 99899997787899981410433554101422689999999989876828999999879 |
RelA contains a TGS domain, named after the Threonyl-tRNA Synthetase, GTPase, and SpoT proteins where it occurs. The function of the TGS domain is unknown. |
| >TIGR00691 spoT_relA RelA/SpoT family protein; InterPro: IPR004811 The functions of Escherichia coli RelA and SpoT differ somewhat | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00019 Score=50.53 Aligned_cols=72 Identities=25% Similarity=0.430 Sum_probs=61.6 Q ss_pred CCEEEECCCCCEEECCCCCCHHHHHHHHCCCCCCCEEEEEECCEEEE-CCEEECCC-EEEEECCCCHH-HHHHHH Q ss_conf 87089928998874189888999998636110112899998988997-74530367-07986289999-999999 Q gi|254781004|r 3 SDIKLTFPDGSIKNFPVHATGSDVAESISRSLAKKAVAVAINGKVCD-LSDPVREG-SIEIITPEDPR-SLAVIR 74 (652) Q Consensus 3 ~~i~I~lpDG~~~~~~~g~t~~dia~~i~~~~~~~~vaa~vng~l~d-L~~~l~d~-~i~~i~~~~~e-g~~i~~ 74 (652) T Consensus 380 ~~i~VFtP~G~~~~Lp~Gs~~vDfAY~vHtd~G~~~~ga~~ng~~~~Sl~~~L~nG~vVEi~t~k~~~aGP~~~W 454 (741) T TIGR00691 380 EEIYVFTPKGDVVELPSGSTPVDFAYAVHTDVGHKCTGAKVNGKIVPSLDKELENGDVVEIITGKNSNAGPSVDW 454 (741) T ss_pred CCCEEECCCEEEEEECCCCCHHHHHHHHCHHHCCEEEEEEECCEEECCCCEEECCCCEEEEEECCCCCCCCCHHH T ss_conf 542463683008874689956677876330243436746897888034450103786899985788776788798 |
RelA (2.7.6.5 from EC) produces pppGpp (or ppGpp) from ATP and GTP (or GDP). SpoT (3.1.7.2 from EC) degrades ppGpp, but may also act as a secondary ppGpp synthetase. The two proteins are strongly similar. In many species, a single homolog to SpoT and RelA appears responsible for both ppGpp synthesis and ppGpp degradation. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species. ; GO: 0015969 guanosine tetraphosphate metabolic process. |
| >PRK07440 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0018 Score=43.76 Aligned_cols=61 Identities=25% Similarity=0.388 Sum_probs=51.0 Q ss_pred CCCCEEEECCCCCEEECCCCCCHHHHHHHHCCCCCCCEEEEEECCEEEECC----EEECC-CEEEEECC Q ss_conf 988708992899887418988899999863611011289999898899774----53036-70798628 Q gi|254781004|r 1 MPSDIKLTFPDGSIKNFPVHATGSDVAESISRSLAKKAVAVAINGKVCDLS----DPVRE-GSIEIITP 64 (652) Q Consensus 1 M~~~i~I~lpDG~~~~~~~g~t~~dia~~i~~~~~~~~vaa~vng~l~dL~----~~l~d-~~i~~i~~ 64 (652) T Consensus 1 m~~~i~I~v-NGe~~~~~~~~ti~~LL~~l--~~~~~~vaVE~N~~Iv~r~~~~~~~l~~gD~iEIv~~ 66 (70) T PRK07440 1 MSNPITLQV-NGETRTCSPGTTLPDLLQQL--GFNPRLVAVEYNGEILHRQFWEQTQVQPGDRLEIVTI 66 (70) T ss_pred CCCCCEEEE-CCEEEECCCCCCHHHHHHHC--CCCCCEEEEEECCEEECHHHCCCEECCCCCEEEEEEE T ss_conf 998419999-99887859999899999876--9998769999688670867707106799999999999 |
|
| >COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.036 Score=34.80 Aligned_cols=58 Identities=22% Similarity=0.402 Sum_probs=48.2 Q ss_pred CEEEECCCCCEEECCCCCCHHHHHHHHCCCCCCCEEEEEECCEEEE----CCEEECC-CEEEEECC Q ss_conf 7089928998874189888999998636110112899998988997----7453036-70798628 Q gi|254781004|r 4 DIKLTFPDGSIKNFPVHATGSDVAESISRSLAKKAVAVAINGKVCD----LSDPVRE-GSIEIITP 64 (652) Q Consensus 4 ~i~I~lpDG~~~~~~~g~t~~dia~~i~~~~~~~~vaa~vng~l~d----L~~~l~d-~~i~~i~~ 64 (652) T Consensus 2 ~m~i~~-ng~~~e~~~~~tv~dLL~~l~--~~~~~vav~vNg~iVpr~~~~~~~l~~gD~ievv~~ 64 (68) T COG2104 2 PMTIQL-NGKEVEIAEGTTVADLLAQLG--LNPEGVAVAVNGEIVPRSQWADTILKEGDRIEVVRV 64 (68) T ss_pred CEEEEE-CCEEEECCCCCCHHHHHHHHC--CCCCEEEEEECCEECCCHHHHHCCCCCCCEEEEEEE T ss_conf 589998-998988378873999999729--998559999889982504632013158998999986 |
|
| >PRK05659 sulfur carrier protein ThiS; Validated | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.062 Score=33.18 Aligned_cols=57 Identities=25% Similarity=0.454 Sum_probs=45.4 Q ss_pred EEEECCCCCEEECCCCCCHHHHHHHHCCCCCCCEEEEEECCEEEECC----EEECC-CEEEEECC Q ss_conf 08992899887418988899999863611011289999898899774----53036-70798628 Q gi|254781004|r 5 IKLTFPDGSIKNFPVHATGSDVAESISRSLAKKAVAVAINGKVCDLS----DPVRE-GSIEIITP 64 (652) Q Consensus 5 i~I~lpDG~~~~~~~g~t~~dia~~i~~~~~~~~vaa~vng~l~dL~----~~l~d-~~i~~i~~ 64 (652) T Consensus 1 M~I~v-NGe~~~~~~~~tl~~Ll~~l~--~~~~~vAVevN~~ivpr~~~~~~~L~egD~iEIv~~ 62 (66) T PRK05659 1 MNIQL-NGEPRELPDGESVAALLAREG--LAGRRVAVEVNGEIVPRSQHASTALREGDVVEIVHA 62 (66) T ss_pred CEEEE-CCEEEECCCCCCHHHHHHHCC--CCCCCEEEEECCEECCHHHHCCCCCCCCCEEEEEEE T ss_conf 99999-996878699996999998769--999809999899881778957265899999999998 |
|
| >cd01669 TGS_Ygr210_C TGS_Ygr210_C: The C-terminal TGS domain of Ygr210 GTP-binding protein which is a member of Obg-like family of GTPases, and present in archaea | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.017 Score=37.00 Aligned_cols=53 Identities=19% Similarity=0.302 Sum_probs=43.6 Q ss_pred CCCCCEEECCCCCCHHHHHHHHCCCCCCCEEEEE--ECCEEEECCEEECCCE-EEEEC Q ss_conf 2899887418988899999863611011289999--8988997745303670-79862 Q gi|254781004|r 9 FPDGSIKNFPVHATGSDVAESISRSLAKKAVAVA--INGKVCDLSDPVREGS-IEIIT 63 (652) Q Consensus 9 lpDG~~~~~~~g~t~~dia~~i~~~~~~~~vaa~--vng~l~dL~~~l~d~~-i~~i~ 63 (652) T Consensus 21 LPD--~~llp~GsT~~DfAy~IHTdiG~~f~~Aida~~~r~v~~d~~L~~gDvi~Ivt 76 (76) T cd01669 21 LPD--AFLLPKGSTARDLAYAIHTDIGDGFLHAIDARTGRRVGEDYELKHRDVIKIVS 76 (76) T ss_pred CCC--EEEECCCCCHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCEEEEEC T ss_conf 876--68807999489999999999875140113000587858872847999999809 |
Several Obg-like family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. TGS is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role. |
| >PRK07696 sulfur carrier protein ThiS; Provisional | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.08 Score=32.41 Aligned_cols=57 Identities=23% Similarity=0.346 Sum_probs=45.3 Q ss_pred EEEECCCCCEEECCCCC-CHHHHHHHHCCCCCCCEEEEEECCEEEECC----EEECC-CEEEEECC Q ss_conf 08992899887418988-899999863611011289999898899774----53036-70798628 Q gi|254781004|r 5 IKLTFPDGSIKNFPVHA-TGSDVAESISRSLAKKAVAVAINGKVCDLS----DPVRE-GSIEIITP 64 (652) Q Consensus 5 i~I~lpDG~~~~~~~g~-t~~dia~~i~~~~~~~~vaa~vng~l~dL~----~~l~d-~~i~~i~~ 64 (652) T Consensus 1 M~I~v-NGe~~~~~~~~~tv~~Ll~~l~--l~~~~vaVE~N~eIvpr~~~~~~~L~~GD~iEIV~f 63 (67) T PRK07696 1 MNLKI-NGNQIEVPESVKTVAELLTHLE--LDNRIVVVERNKDILQKDDHTDTSVFDGDQIEIVTF 63 (67) T ss_pred CEEEE-CCEEEECCCCCCCHHHHHHHCC--CCCCEEEEEECCEECCHHHHCCEECCCCCEEEEEEE T ss_conf 98999-9988885886545999998669--998669999798575768809447799999999999 |
|
| >PRK06083 sulfur carrier protein ThiS; Provisional | Back alignment and domain information |
|---|
Probab=94.94 E-value=0.11 Score=31.54 Aligned_cols=60 Identities=22% Similarity=0.350 Sum_probs=47.4 Q ss_pred CCCCEEEECCCCCEEECCCCCCHHHHHHHHCCCCCCCEEEEEECCEEEECC----EEECC-CEEEEECC Q ss_conf 988708992899887418988899999863611011289999898899774----53036-70798628 Q gi|254781004|r 1 MPSDIKLTFPDGSIKNFPVHATGSDVAESISRSLAKKAVAVAINGKVCDLS----DPVRE-GSIEIITP 64 (652) Q Consensus 1 M~~~i~I~lpDG~~~~~~~g~t~~dia~~i~~~~~~~~vaa~vng~l~dL~----~~l~d-~~i~~i~~ 64 (652) T Consensus 1 m~-~m~I~v-Nge~~~v~~~~tl~~Ll~~l~--l~~~giAvaiN~~iVPRs~W~~~~l~~gD~Iei~~A 65 (69) T PRK06083 1 MN-TITISI-NDQSYQVPTSSSLAQIIEQLS--LPELGCVFAINNQVVPRSEWQSTVLSEGDAISLFQA 65 (69) T ss_pred CC-EEEEEE-CCEEEECCCCCCHHHHHHHHC--CCCCCEEEEECCEEECHHHCCCCCCCCCCEEEEEEE T ss_conf 97-789999-998877389983999999738--998868999778384356716045899999999988 |
|
| >PRK07569 bidirectional hydrogenase complex protein HoxU; Validated | Back alignment and domain information |
|---|
Probab=94.68 E-value=0.28 Score=28.64 Aligned_cols=79 Identities=23% Similarity=0.276 Sum_probs=50.9 Q ss_pred CCCCEEEECCCCCEEECCCCCCHHHHHHHHCCCCCC-------------CEEEEEECC--EEEEC-CEEECCCEEEEECC Q ss_conf 988708992899887418988899999863611011-------------289999898--89977-45303670798628 Q gi|254781004|r 1 MPSDIKLTFPDGSIKNFPVHATGSDVAESISRSLAK-------------KAVAVAING--KVCDL-SDPVREGSIEIITP 64 (652) Q Consensus 1 M~~~i~I~lpDG~~~~~~~g~t~~dia~~i~~~~~~-------------~~vaa~vng--~l~dL-~~~l~d~~i~~i~~ 64 (652) T Consensus 1 M~-mvtltI-dG~~v~v~~G~tILeaa~~~Gi~IP~LCy~~~l~~~G~CR~C~VEveG~~~lv~sC~t~v~eGM~--V~T 76 (236) T PRK07569 1 MS-VKTLTI-DDQLVSAREGETILQAAREAGIPIPTLCHLEGVSDVGACRLCLVEVEGSNKLLPACVTPVAEGMV--VQT 76 (236) T ss_pred CC-EEEEEE-CCEEEEECCCCHHHHHHHHCCCCCCEECCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCE--EEE T ss_conf 97-389999-99999968989599999985998472546899398886673279989985315663758899848--992 Q ss_pred CCHHHHHHHHHHHHHHHHH Q ss_conf 9999999999989999999 Q gi|254781004|r 65 EDPRSLAVIRHSCAHIMAE 83 (652) Q Consensus 65 ~~~eg~~i~~hS~ahlL~~ 83 (652) T Consensus 77 ~s~~v~~~Rk~~lellL~~ 95 (236) T PRK07569 77 NTPRLQEYRRMIVELLFAE 95 (236) T ss_pred CCHHHHHHHHHHHHHHHHC T ss_conf 9989999999999999972 |
|
| >PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional | Back alignment and domain information |
|---|
Probab=94.29 E-value=0.13 Score=30.89 Aligned_cols=58 Identities=22% Similarity=0.306 Sum_probs=45.9 Q ss_pred EEEECCCCCEEECCCCCCHHHHHHHHCCCCCCCEEEEEECCEEEECC----EEECC-CEEEEECCC Q ss_conf 08992899887418988899999863611011289999898899774----53036-707986289 Q gi|254781004|r 5 IKLTFPDGSIKNFPVHATGSDVAESISRSLAKKAVAVAINGKVCDLS----DPVRE-GSIEIITPE 65 (652) Q Consensus 5 i~I~lpDG~~~~~~~g~t~~dia~~i~~~~~~~~vaa~vng~l~dL~----~~l~d-~~i~~i~~~ 65 (652) T Consensus 1 M~Itv-NGE~r~~~~~~Tv~~Ll~~L--~l~p~~VAVe~N~eIvPR~~w~~t~L~eGD~lEIV~fV 63 (327) T PRK11840 1 MRIRL-NGEPREVPAGLTIEALLAEL--GLDPKKVAVERNLEIVPRSEYGSVALSEGDQLEIVHFV 63 (327) T ss_pred CEEEE-CCEEEECCCCCCHHHHHHHC--CCCCCCEEEEECCEECCHHHCCCCCCCCCCEEEEEEEE T ss_conf 97999-99864358878699999974--89976156720470611444265216899889999997 |
|
| >PRK05863 sulfur carrier protein ThiS; Provisional | Back alignment and domain information |
|---|
Probab=94.19 E-value=0.15 Score=30.46 Aligned_cols=57 Identities=19% Similarity=0.321 Sum_probs=44.6 Q ss_pred EEEECCCCCEEECCCCCCHHHHHHHHCCCCCCCEEEEEECCEEEECC---EEECC-CEEEEECC Q ss_conf 08992899887418988899999863611011289999898899774---53036-70798628 Q gi|254781004|r 5 IKLTFPDGSIKNFPVHATGSDVAESISRSLAKKAVAVAINGKVCDLS---DPVRE-GSIEIITP 64 (652) Q Consensus 5 i~I~lpDG~~~~~~~g~t~~dia~~i~~~~~~~~vaa~vng~l~dL~---~~l~d-~~i~~i~~ 64 (652) T Consensus 1 M~I~v-Nge~~e~~~~~Tva~Ll~~l~--~~~~giAVavN~~iVPRs~w~t~L~eGd~veiv~a 61 (65) T PRK05863 1 MIVVV-NEEQVEVDEQTTVAALLDSLG--FPEKGIAVAVDWSVLPRSEWATKLRDGARLEVVTA 61 (65) T ss_pred CEEEE-CCEEEECCCCCCHHHHHHHCC--CCCCCEEEEECCEEECCHHHCCCCCCCCEEEEEEE T ss_conf 98999-993578699870999998729--99885899978958450684062789999999987 |
|
| >PRK06944 sulfur carrier protein ThiS; Provisional | Back alignment and domain information |
|---|
Probab=94.02 E-value=0.19 Score=29.78 Aligned_cols=56 Identities=18% Similarity=0.357 Sum_probs=44.1 Q ss_pred EEEECCCCCEEECCCCCCHHHHHHHHCCCCCCCEEEEEECCEEEECC----EEECC-CEEEEECC Q ss_conf 08992899887418988899999863611011289999898899774----53036-70798628 Q gi|254781004|r 5 IKLTFPDGSIKNFPVHATGSDVAESISRSLAKKAVAVAINGKVCDLS----DPVRE-GSIEIITP 64 (652) Q Consensus 5 i~I~lpDG~~~~~~~g~t~~dia~~i~~~~~~~~vaa~vng~l~dL~----~~l~d-~~i~~i~~ 64 (652) T Consensus 1 M~I~v-Nge~~~lp~g~tvadll~~l~~--~-~~~AVavN~~~VPRs~~~~~~L~~GD~ieiv~~ 61 (65) T PRK06944 1 MDIQL-NQQTLSLPDGATVADALAAYGA--R-PPFAVAVNGNFVARTQHAARALAAGDRLDLVHP 61 (65) T ss_pred CEEEE-CCEEEECCCCCCHHHHHHHCCC--C-CCEEEEECCEEECHHHHHHCCCCCCCEEEEEEE T ss_conf 98999-9946427999979999986286--8-977999847980314533312789999999974 |
|
| >PRK08053 sulfur carrier protein ThiS; Provisional | Back alignment and domain information |
|---|
Probab=93.09 E-value=0.42 Score=27.45 Aligned_cols=57 Identities=16% Similarity=0.250 Sum_probs=44.7 Q ss_pred EEEECCCCCEEECCCCCCHHHHHHHHCCCCCCCEEEEEECCEEEECC----EEECC-CEEEEECC Q ss_conf 08992899887418988899999863611011289999898899774----53036-70798628 Q gi|254781004|r 5 IKLTFPDGSIKNFPVHATGSDVAESISRSLAKKAVAVAINGKVCDLS----DPVRE-GSIEIITP 64 (652) Q Consensus 5 i~I~lpDG~~~~~~~g~t~~dia~~i~~~~~~~~vaa~vng~l~dL~----~~l~d-~~i~~i~~ 64 (652) T Consensus 1 M~I~i-N~e~~e~~~~~tl~~Ll~~l~--~~~~giAvAiN~~vVPRs~W~~~~L~egD~I~i~~A 62 (66) T PRK08053 1 MQILF-NDQPMQCAAGQTVHELLEQLN--QLQPGAALAINQQIVPREQWAQHIVQDGDQILLFQV 62 (66) T ss_pred CEEEE-CCEEEECCCCCCHHHHHHHHC--CCCCCEEEEECCEEECHHHCCCCCCCCCCEEEEEEE T ss_conf 99999-998878689985999998727--888858999889785578866531689999999984 |
|
| >pfam02597 ThiS ThiS family | Back alignment and domain information |
|---|
Probab=93.01 E-value=0.33 Score=28.18 Aligned_cols=53 Identities=28% Similarity=0.499 Sum_probs=42.3 Q ss_pred CCCEEECCCCCCHHHHHHHHCCCCCCCEEEEEECCEEEEC---CEEECC-CEEEEECCC Q ss_conf 9988741898889999986361101128999989889977---453036-707986289 Q gi|254781004|r 11 DGSIKNFPVHATGSDVAESISRSLAKKAVAVAINGKVCDL---SDPVRE-GSIEIITPE 65 (652) Q Consensus 11 DG~~~~~~~g~t~~dia~~i~~~~~~~~vaa~vng~l~dL---~~~l~d-~~i~~i~~~ 65 (652) T Consensus 11 ~G~~~~~~~~~tv~~ll~~l~~--~~~~v~v~vN~~~v~~~~~~~~L~~gD~v~ivppV 67 (70) T pfam02597 11 AGKELELPEGATVAELLEALGL--NPERVAVAVNGEIVPRSQADTPLKDGDEVAIIPPV 67 (70) T ss_pred CCCEEECCCCCCHHHHHHHHCC--CCCCEEEEECCEECCCCCCCCCCCCCCEEEEECCC T ss_conf 5997635999969999998388--88888999999986785677677999999997886 |
ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in the thiCEFSGH operon in E. coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS. MoaD, a protein involved sulphur transfer in molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end. |
| >cd00565 ThiS ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria | Back alignment and domain information |
|---|
Probab=92.87 E-value=0.29 Score=28.61 Aligned_cols=55 Identities=27% Similarity=0.432 Sum_probs=43.1 Q ss_pred EECCCCCEEECCCCCCHHHHHHHHCCCCCCCEEEEEECCEEEECC----EEECC-CEEEEECC Q ss_conf 992899887418988899999863611011289999898899774----53036-70798628 Q gi|254781004|r 7 LTFPDGSIKNFPVHATGSDVAESISRSLAKKAVAVAINGKVCDLS----DPVRE-GSIEIITP 64 (652) Q Consensus 7 I~lpDG~~~~~~~g~t~~dia~~i~~~~~~~~vaa~vng~l~dL~----~~l~d-~~i~~i~~ 64 (652) T Consensus 2 I~i-NG~~~~~~~~~tl~~ll~~~~~--~~~~vaV~~N~~ivpk~~~~~~~l~~gD~iEii~~ 61 (65) T cd00565 2 ITV-NGEPREVEEGTTLAELLEELGL--PPEGVAVEVNGEIVPRSEWADTELQEGDRIEIVTA 61 (65) T ss_pred EEE-CCEEEECCCCCCHHHHHHHCCC--CCCCEEEEECCEECCHHHCCCCCCCCCCEEEEEEE T ss_conf 899-9998886999979999987699--98859999999980878928100899899999987 |
The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity. |
| >PRK06488 sulfur carrier protein ThiS; Validated | Back alignment and domain information |
|---|
Probab=92.82 E-value=0.32 Score=28.27 Aligned_cols=56 Identities=23% Similarity=0.303 Sum_probs=43.2 Q ss_pred EEEECCCCCEEECCCCCCHHHHHHHHCCCCCCCEEEEEECCEEEECC----EEECC-CEEEEECC Q ss_conf 08992899887418988899999863611011289999898899774----53036-70798628 Q gi|254781004|r 5 IKLTFPDGSIKNFPVHATGSDVAESISRSLAKKAVAVAINGKVCDLS----DPVRE-GSIEIITP 64 (652) Q Consensus 5 i~I~lpDG~~~~~~~g~t~~dia~~i~~~~~~~~vaa~vng~l~dL~----~~l~d-~~i~~i~~ 64 (652) T Consensus 1 MkI~v-NGe~~e~~-a~tl~~Ll~elg--~~~~~vAvAvN~~~Vpr~~~~~~~L~eGDriEIv~p 61 (65) T PRK06488 1 MKLFV-NGEEIETA-ATTLALLLAELG--YEGNWLATAVNGELVHSEARAQFVLHEGDRIEILSP 61 (65) T ss_pred CEEEE-CCEEEEEC-HHHHHHHHHHCC--CCCCCEEEEECCEEECHHHHCCCCCCCCCEEEEECC T ss_conf 98999-99777700-868999999729--888808999899987424505451799999999646 |
|
| >TIGR01683 thiS thiamine biosynthesis protein ThiS; InterPro: IPR010035 This entry identifies the ThiS family, which are thiamine-biosynthesis proteins related to MoaD (IPR010034 from INTERPRO) | Back alignment and domain information |
|---|
Probab=91.64 E-value=0.53 Score=26.77 Aligned_cols=52 Identities=31% Similarity=0.388 Sum_probs=42.6 Q ss_pred CCCEEECCCCCCHHHHHHHHCCCCCC-CEEEEEECCEEEECC----EEECC-CEEEEECC Q ss_conf 99887418988899999863611011-289999898899774----53036-70798628 Q gi|254781004|r 11 DGSIKNFPVHATGSDVAESISRSLAK-KAVAVAINGKVCDLS----DPVRE-GSIEIITP 64 (652) Q Consensus 11 DG~~~~~~~g~t~~dia~~i~~~~~~-~~vaa~vng~l~dL~----~~l~d-~~i~~i~~ 64 (652) T Consensus 4 NG~~~~~~~~~t~~~LL~~~--~~~~~~~vave~N~~ivp~~~w~~~~l~~gD~iEiv~~ 61 (65) T TIGR01683 4 NGEPVEVEDGTTLAALLESL--GLDPKRRVAVEVNGEIVPRSEWEDTILKEGDRIEIVTF 61 (65) T ss_pred CCCCEEECCCCCHHHHHHHH--CCCCCCEEEEEECCEEECCCCCCCEEECCCCEEEEEEE T ss_conf 99124625888878988860--75358748998698340834567510158985889976 |
MoaD is a molybdenum cofactor biosynthesis protein. Both ThiS and MoaD proteins are involved in sulphur transfer.. |
| >smart00863 tRNA_SAD Threonyl and Alanyl tRNA synthetase second additional domain | Back alignment and domain information |
|---|
Probab=98.49 E-value=2.1e-08 Score=77.80 Aligned_cols=43 Identities=47% Similarity=1.019 Sum_probs=39.5 Q ss_pred CEEECCCCC-EEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEE Q ss_conf 213025752-010002355214442223333332111015775642068999 Q gi|254781004|r 171 VTLYRQGEW-FDLCRGPHVRSTGQVKKFFKLMKVAGAYWRGDSNRPMLSRIY 221 (652) Q Consensus 171 v~~y~~g~~-~Dlc~GphvpsTg~ik~~fkL~~~sgayw~gd~~~~~l~Riy 221 (652) T Consensus 1 vrvv~i~~~~~~~C~GtHv~~T~~ig~-~ki~~~~~~~~~-------~~RI~ 44 (44) T smart00863 1 VRVVSIGDFDVELCGGTHVPNTGEIGA-FKILSVSGAYWG-------LQRIY 44 (44) T ss_pred CEEEEECCEEEECCCCCCCCCCCEEEE-EEEEEECHHCCC-------CEECC T ss_conf 979999997987878966367062436-999995621328-------59249 |
The catalytically active form of threonyl/alanyl tRNA synthetase is a dimer. Within the tRNA synthetase class II dimer, the bound tRNA interacts with both monomers making specific interactions with the catalytic domain, the C-terminal domain, and this SAD domain (the second additional domain). The second additional domain is comprised of a pair of perpendicularly orientated antiparallel beta sheets, of four and three strands, respectively, that surround a central alpha helix that forms the core of the domain. |
| >pfam07973 tRNA_SAD Threonyl and Alanyl tRNA synthetase second additional domain | Back alignment and domain information |
|---|
Probab=98.46 E-value=3.7e-08 Score=76.13 Aligned_cols=43 Identities=47% Similarity=0.839 Sum_probs=39.5 Q ss_pred CEEECCCC-CEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEE Q ss_conf 21302575-2010002355214442223333332111015775642068999 Q gi|254781004|r 171 VTLYRQGE-WFDLCRGPHVRSTGQVKKFFKLMKVAGAYWRGDSNRPMLSRIY 221 (652) Q Consensus 171 v~~y~~g~-~~Dlc~GphvpsTg~ik~~fkL~~~sgayw~gd~~~~~l~Riy 221 (652) T Consensus 1 vrvv~ig~~~~~~C~GtHV~nT~~I~~-fki~-------k~~~~~~g~~RI~ 44 (44) T pfam07973 1 VRVVRIGDFDVDLCGGTHVPNTGEIGA-FKIL-------KGDSKNKGLQRIY 44 (44) T ss_pred CEEEEECCEEEECCCCCCCCCCCCCCE-EEEE-------ECCCCCCCCEECC T ss_conf 979998991987877958788252012-9999-------7144828759629 |
The catalytically active from of threonyl/alanyl tRNA synthetase is a dimer. Within the tRNA synthetase class II dimer, the bound tRNA interacts with both monomers making specific interactions with the catalytic domain, the C-terminal domain, and this domain (the second additional domain). The second additional domain is comprised of a pair of perpendicularly orientated antiparallel beta sheets, of four and three strands, respectively, that surround a central alpha helix that forms the core of the domain. |
| >PRK12820 bifunctional aspartyl-tRNA synthetase/aspartyl/glutamyl-tRNA amidotransferase subunit C; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=4.6e-07 Score=68.59 Aligned_cols=116 Identities=19% Similarity=0.237 Sum_probs=74.8 Q ss_pred HHHHHHHHHHHHHHHH-HCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCEEEECCCCHHHHHHHHHH Q ss_conf 7899999999999887-689638555432443100011210012555420100145677782377434312577776520 Q gi|254781004|r 272 GWKIFQTLISYMRRKI-KDDYEEINTPQVLDQHLWQQSGHWDSYRANMFAVKCADDTIKDLRTFALKPMNCPGHVAVFNH 350 (652) Q Consensus 272 G~~i~~~ie~~ir~~~-~~G~~eV~tP~l~~~~Lw~~SGh~~~y~~~mf~~~~~~~~~~~~~~~~LkPmncp~h~~i~~~ 350 (652) T Consensus 155 ~~~~Rskv~~~iR~~l~~~gF~EVETP~L~~st-pE--G-----ArdflvPsr~~----~~~fyaLp-----QSPQlyKQ 217 (706) T PRK12820 155 HLAKRHRIIKCARDFLDSRGFLEIETPILTKST-PE--G-----ARDYLVPSRIH----PKEFYALP-----QSPQLFKQ 217 (706) T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCEECCCC-CC--C-----CCCCCCCEECC----CCCEECCC-----CCHHHHHH T ss_conf 999999999999999987798896687044567-53--2-----45750024458----87650056-----68299999 Q ss_pred CCC-CHHHCCHHHHHHEEEECCCCCCCCEEEEECCCCCCCCCE-EECCHHHHHHHHHHHHHHH Q ss_conf 122-223104320001000127876452000105635334421-0105376788789999998 Q gi|254781004|r 351 GLK-SYRELPVRLAEFGSVYRNEPSGSLHGLMRVRGFTQDDAH-VFCTKEQMFNECLKIHNLI 411 (652) Q Consensus 351 ~~~-SYrdLPlrl~e~~~~~R~E~sg~l~GL~R~ReF~~~Dah-~F~~~eq~~~e~~~~~~~~ 411 (652) T Consensus 218 lLMvg--G~-dRyFqIarcFRdEd~r~----dRqPEFTqlDiEmSF~d~edvm~l~E~li~~~ 273 (706) T PRK12820 218 LLMIA--GF-ERYFQLARCFRDEDLRP----NRQPEFTQLDIEASFIDEEFIFELIEELTARM 273 (706) T ss_pred HHHHC--CC-CEEEEEEEEECCCCCCC----CCCCCEEEEEEEHHCCCHHHHHHHHHHHHHHH T ss_conf 99862--86-61799600112899998----87983406874213489999999999999999 |
|
| >PRK09537 pylS pyrolysyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=98.41 E-value=2.8e-07 Score=70.04 Aligned_cols=102 Identities=20% Similarity=0.390 Sum_probs=72.3 Q ss_pred HHHHHHHHHHH-HHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCEEEECCCCHHHHHHHHHHCCCC Q ss_conf 99999999988-76896385554324431000112100125554201001456777823774343125777765201222 Q gi|254781004|r 276 FQTLISYMRRK-IKDDYEEINTPQVLDQHLWQQSGHWDSYRANMFAVKCADDTIKDLRTFALKPMNCPGHVAVFNHGLKS 354 (652) Q Consensus 276 ~~~ie~~ir~~-~~~G~~eV~tP~l~~~~Lw~~SGh~~~y~~~mf~~~~~~~~~~~~~~~~LkPmncp~h~~i~~~~~~S 354 (652) T Consensus 209 lgkler~it~ffvdrgfleikspilip~eyiermgi-d~d--~els----kQiFrvd~n~CLRPMLAPnLYnylrkL~R~ 281 (420) T PRK09537 209 LGKLERDITKFFVDRGFLEIKSPILIPAEYIERMGI-DND--TELS----KQIFRVDKNFCLRPMLAPNLYNYLRKLDRA 281 (420) T ss_pred HHHHHHHHHHHHHCCCCEEECCCEECCHHHHHHHCC-CCH--HHHH----HHHEEECCCCCCCCCCCHHHHHHHHHHHHH T ss_conf 767788889985414513514850421999998578-860--5655----451674345332410142699999999861 Q ss_pred HHHCCHHHHHHEEEECCCCCCCCEEEEECCCCCCC Q ss_conf 23104320001000127876452000105635334 Q gi|254781004|r 355 YRELPVRLAEFGSVYRNEPSGSLHGLMRVRGFTQD 389 (652) Q Consensus 355 YrdLPlrl~e~~~~~R~E~sg~l~GL~R~ReF~~~ 389 (652) T Consensus 282 lpd-PIrIFEIGpCyRKESdG~----~HLeEFTMl 311 (420) T PRK09537 282 LPD-PIKIFEIGPCYRKESDGK----EHLEEFTMV 311 (420) T ss_pred CCC-CEEEEEECCCCCCCCCCH----HHHHHHHHH T ss_conf 688-715886204303444106----788777777 |
|
| >PRK00484 lysS lysyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.5e-06 Score=65.07 Aligned_cols=116 Identities=17% Similarity=0.204 Sum_probs=73.2 Q ss_pred HHHHHHHHHHHHHHH-HCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCEEEECCCCHHHHHHHHHHC Q ss_conf 899999999999887-6896385554324431000112100125554201001456777823774343125777765201 Q gi|254781004|r 273 WKIFQTLISYMRRKI-KDDYEEINTPQVLDQHLWQQSGHWDSYRANMFAVKCADDTIKDLRTFALKPMNCPGHVAVFNHG 351 (652) Q Consensus 273 ~~i~~~ie~~ir~~~-~~G~~eV~tP~l~~~~Lw~~SGh~~~y~~~mf~~~~~~~~~~~~~~~~LkPmncp~h~~i~~~~ 351 (652) T Consensus 171 f~~Rs~ii~~iR~~l~~~gF~EVeTPiL~~~~----gG------A~ArpF~t~~n--~l~~~~yL~~-----SPqLylk~ 233 (491) T PRK00484 171 FRKRSKIISAIRRFLDNRGFLEVETPMLQPIP----GG------AAARPFITHHN--ALDIDLYLRI-----APELYLKR 233 (491) T ss_pred HHHHHHHHHHHHHHHHHCCEEEEECCCCCCCC----CC------CCCCCCCCCCC--CCCCCEEECC-----CHHHHHHH T ss_conf 99999999999999986768998678776668----87------56676556445--6685544206-----87898777 Q ss_pred CCCHHHCCHHHHHHEEEECCCCCCCCEEEEECCCCCCCCCE-EECCHHHHHHHHHHHHHHH Q ss_conf 22223104320001000127876452000105635334421-0105376788789999998 Q gi|254781004|r 352 LKSYRELPVRLAEFGSVYRNEPSGSLHGLMRVRGFTQDDAH-VFCTKEQMFNECLKIHNLI 411 (652) Q Consensus 352 ~~SYrdLPlrl~e~~~~~R~E~sg~l~GL~R~ReF~~~Dah-~F~~~eq~~~e~~~~~~~~ 411 (652) T Consensus 234 l~v-gG~-ervfeI~r~FR~E~~~~----rH~pEFT~lE~e~af~d~~dvm~l~E~li~~v 288 (491) T PRK00484 234 LIV-GGF-ERVFEIGRNFRNEGIDT----RHNPEFTMIEFYQAYADYNDMMDLTEELIRHL 288 (491) T ss_pred HHH-CCC-HHHEEHHHHHHCCCCCC----CCCCCEEEEEEEEECCCHHHHHHHHHHHHHHH T ss_conf 876-272-02222487662575543----41840102136772479999999999999999 |
|
| >PRK09350 lysyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.6e-06 Score=64.89 Aligned_cols=126 Identities=15% Similarity=0.155 Sum_probs=77.4 Q ss_pred EEECCH----HHHHHHHHHHHHHHH-HCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCEEEECCCCH Q ss_conf 650107----899999999999887-689638555432443100011210012555420100145677782377434312 Q gi|254781004|r 267 FWHRKG----WKIFQTLISYMRRKI-KDDYEEINTPQVLDQHLWQQSGHWDSYRANMFAVKCADDTIKDLRTFALKPMNC 341 (652) Q Consensus 267 ~wlP~G----~~i~~~ie~~ir~~~-~~G~~eV~tP~l~~~~Lw~~SGh~~~y~~~mf~~~~~~~~~~~~~~~~LkPmnc 341 (652) T Consensus 6 ~w~~~as~~~l~~Rs~i~~~iR~ff~~~gFlEVeTP~L~~~t~--~~~~~~~f~~~~~~~~-----~~~~~~~yL~~SP- 77 (325) T PRK09350 6 SWQPSASIKNLLKRAAIIAEIRRFFADRGVLEVETPAMSQATV--TDIHLVPFETRFVGPG-----HSQGKTLWLMTSP- 77 (325) T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCC--CCCCCCCEEEECCCCC-----CCCCCCEEEECCH- T ss_conf 7777147999999999999999999988968977984257788--7646762221025655-----4567664550791- Q ss_pred HHHHHHHHHCC-CCHHHCCHHHHHHEEEECCCCCCCCEEEEECCCCCCCCCE-EECCHHHHHHHHHHHHHHH Q ss_conf 57777652012-2223104320001000127876452000105635334421-0105376788789999998 Q gi|254781004|r 342 PGHVAVFNHGL-KSYRELPVRLAEFGSVYRNEPSGSLHGLMRVRGFTQDDAH-VFCTKEQMFNECLKIHNLI 411 (652) Q Consensus 342 p~h~~i~~~~~-~SYrdLPlrl~e~~~~~R~E~sg~l~GL~R~ReF~~~Dah-~F~~~eq~~~e~~~~~~~~ 411 (652) T Consensus 78 ----ql~~k~l~~~G--~-~rvfqI~~~FR~E~~~~----~H~pEFtmlE~~~~~~d~~d~m~~~e~ll~~~ 138 (325) T PRK09350 78 ----EYHMKRLLAAG--S-GPIFQLCRSFRNEEAGR----YHNPEFTMLEWYRPHYDMYRLMNEVDDLLQQV 138 (325) T ss_pred ----HHHHHHHHHCC--C-CCEEEEEHHHCCCCCCC----CCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHH T ss_conf ----99999998667--8-85589611322899987----65737788899981548999999999999999 |
|
| >PRK05159 aspC aspartyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=1.3e-05 Score=58.51 Aligned_cols=114 Identities=18% Similarity=0.312 Sum_probs=72.9 Q ss_pred HHHHHHHHHHHHHHHH-HCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCEEEECCCCHHHHHHHHHH Q ss_conf 7899999999999887-689638555432443100011210012555420100145677782377434312577776520 Q gi|254781004|r 272 GWKIFQTLISYMRRKI-KDDYEEINTPQVLDQHLWQQSGHWDSYRANMFAVKCADDTIKDLRTFALKPMNCPGHVAVFNH 350 (652) Q Consensus 272 G~~i~~~ie~~ir~~~-~~G~~eV~tP~l~~~~Lw~~SGh~~~y~~~mf~~~~~~~~~~~~~~~~LkPmncp~h~~i~~~ 350 (652) T Consensus 136 ~~r~Rs~i~~~iR~fl~~~gF~EVeTP~l~~~~~e---G-----ga~~f~~~~~------~~~~yL~~S-----pqly~q 196 (434) T PRK05159 136 IFKIRSEVLRAFREFLYEEGFTEIFTPKIVATGTE---G-----GTELFPVKYF------EKEAFLAQS-----PQLYKQ 196 (434) T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCC---C-----CCCCCCEEEC------CCEEEECCC-----CHHHHH T ss_conf 99999999999999998779199978743256788---7-----5565861312------753341468-----379999 Q ss_pred CC-CCHHHCCHHHHHHEEEECCCCCCC-CEEEEECCCCCCCCCE-EECCHHHHHHHHHHHHHHH Q ss_conf 12-222310432000100012787645-2000105635334421-0105376788789999998 Q gi|254781004|r 351 GL-KSYRELPVRLAEFGSVYRNEPSGS-LHGLMRVRGFTQDDAH-VFCTKEQMFNECLKIHNLI 411 (652) Q Consensus 351 ~~-~SYrdLPlrl~e~~~~~R~E~sg~-l~GL~R~ReF~~~Dah-~F~~~eq~~~e~~~~~~~~ 411 (652) T Consensus 197 ~li~~--G~~-rvfeI~~~FR~E~~~t~RH----~pEFT~lE~e~af~d~~d~m~~~E~li~~i 253 (434) T PRK05159 197 MMMAA--GFE-RVFEIGPAFRAEEHNTTRH----LNEAISIDVEMGFIDEEDVMDLLENLLKYV 253 (434) T ss_pred HHHHC--CCC-CEEEECCCEECCCCCCCCC----HHHHHHHHHHHCCCCHHHHHHHHHHHHHHH T ss_conf 98763--568-5599660102365875445----356765666631068999999999999999 |
|
| >cd00775 LysRS_core Lys_tRNA synthetase (LysRS) class II core domain | Back alignment and domain information |
|---|
Probab=98.16 E-value=6.2e-06 Score=60.80 Aligned_cols=115 Identities=18% Similarity=0.237 Sum_probs=71.8 Q ss_pred HHHHHHHHHHHHHHH-HCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCEEEECCCCHHHHHHHHHHC Q ss_conf 899999999999887-6896385554324431000112100125554201001456777823774343125777765201 Q gi|254781004|r 273 WKIFQTLISYMRRKI-KDDYEEINTPQVLDQHLWQQSGHWDSYRANMFAVKCADDTIKDLRTFALKPMNCPGHVAVFNHG 351 (652) Q Consensus 273 ~~i~~~ie~~ir~~~-~~G~~eV~tP~l~~~~Lw~~SGh~~~y~~~mf~~~~~~~~~~~~~~~~LkPmncp~h~~i~~~~ 351 (652) T Consensus 8 ~~~Rs~i~~~iR~ff~~~gF~Ev~TPiL~~~~----~g~~----~~~f~~~~----~~~~~~~yL~qS-----pQl~~q~ 70 (329) T cd00775 8 FIVRSKIISYIRKFLDDRGFLEVETPMLQPIA----GGAA----ARPFITHH----NALDMDLYLRIA-----PELYLKR 70 (329) T ss_pred HHHHHHHHHHHHHHHHHCCCEEEECCCCCCCC----CCCC----CCCEEECC----CCCCCCCCCCCC-----HHHHHHH T ss_conf 99999999999999998898899798655668----8756----75313224----467867230689-----8999999 Q ss_pred CC-CHHHCCHHHHHHEEEECCCCCCCCEEEEECCCCCCCCCE-EECCHHHHHHHHHHHHHHH Q ss_conf 22-223104320001000127876452000105635334421-0105376788789999998 Q gi|254781004|r 352 LK-SYRELPVRLAEFGSVYRNEPSGSLHGLMRVRGFTQDDAH-VFCTKEQMFNECLKIHNLI 411 (652) Q Consensus 352 ~~-SYrdLPlrl~e~~~~~R~E~sg~l~GL~R~ReF~~~Dah-~F~~~eq~~~e~~~~~~~~ 411 (652) T Consensus 71 l~~~--g~~-rvfqI~p~FR~E~~~~----rHl~EFtmle~E~~f~d~~dvm~~~E~li~~i 125 (329) T cd00775 71 LIVG--GFE-RVYEIGRNFRNEGIDL----THNPEFTMIEFYEAYADYNDMMDLTEDLFSGL 125 (329) T ss_pred HHHC--CCC-CEEEEEECCCCCCCCC----CCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHH T ss_conf 9856--777-6799810224799997----74734563457774479999999999999999 |
Class II LysRS is a dimer which attaches a lysine to the 3' OH group of ribose of the appropriate tRNA. Its assignment to class II aaRS is based upon its structure and the presence of three characteristic sequence motifs in the core domain. It is found in eukaryotes as well as some prokaryotes and archaea. However, LysRS belongs to class I aaRS's in some prokaryotes and archaea. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. |
| >PRK03932 asnC asparaginyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
Probab=98.16 E-value=8.1e-06 Score=59.99 Aligned_cols=125 Identities=14% Similarity=0.207 Sum_probs=70.5 Q ss_pred HHHHHHHHHHHHHHH-HCCCEEEECCCCCCC------CCCCCC-CCCCCCCCCCCEEECCCCCCCCCCEEEECCCCHHHH Q ss_conf 899999999999887-689638555432443------100011-210012555420100145677782377434312577 Q gi|254781004|r 273 WKIFQTLISYMRRKI-KDDYEEINTPQVLDQ------HLWQQS-GHWDSYRANMFAVKCADDTIKDLRTFALKPMNCPGH 344 (652) Q Consensus 273 ~~i~~~ie~~ir~~~-~~G~~eV~tP~l~~~------~Lw~~S-Gh~~~y~~~mf~~~~~~~~~~~~~~~~LkPmncp~h 344 (652) T Consensus 135 fr~RS~i~~~iR~~l~~~~F~EVeTP~L~~~~~eGaa~~F~v~~~~~~~~~~~-------~~~~~~~~~yf~~~~yL~~S 207 (462) T PRK03932 135 MRVRNTLAQAIHEFFQENGFVWVHTPIITASDCEGAGELFRVTTLDLENLPRT-------DGKVDFSKDFFGKEAFLTVS 207 (462) T ss_pred HHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEECCCCCCCCCCC-------CCCCCCHHHHCCCCCCCCCC T ss_conf 99999999999999976796799788653568764557404214543445433-------44433114542776202657 Q ss_pred HHHHHHCCCCHHHCCHHHHHHEEEECCCCCCCCEEEEECCCCCCCCCE-EECCHHHHHHHHHHHHHH Q ss_conf 776520122223104320001000127876452000105635334421-010537678878999999 Q gi|254781004|r 345 VAVFNHGLKSYRELPVRLAEFGSVYRNEPSGSLHGLMRVRGFTQDDAH-VFCTKEQMFNECLKIHNL 410 (652) Q Consensus 345 ~~i~~~~~~SYrdLPlrl~e~~~~~R~E~sg~l~GL~R~ReF~~~Dah-~F~~~eq~~~e~~~~~~~ 410 (652) T Consensus 208 pqLylq~li~--G~e-rVfeIg~~FRnE~~~t~---RH~pEFT~lE~e~a~~d~~d~m~l~E~li~~ 268 (462) T PRK03932 208 GQLYAEAYAM--ALS-KVYTFGPTFRAENSNTR---RHLAEFWMIEPEMAFADLEDNMDLAEDMLKY 268 (462) T ss_pred HHHHHHHHHH--HCC-CEEEEEHHHHHCCCCCC---CCCCCCEEEEEEEECCCHHHHHHHHHHHHHH T ss_conf 6899999875--206-48997332320567754---4543002555311006899999999999999 |
|
| >KOG2411 consensus | Back alignment and domain information |
|---|
Probab=98.12 E-value=5.3e-06 Score=61.28 Aligned_cols=110 Identities=20% Similarity=0.435 Sum_probs=76.1 Q ss_pred CCHHHHHHHHHHHHHHHH-HC-CCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCEEEECCCCHH-HHHH Q ss_conf 107899999999999887-68-96385554324431000112100125554201001456777823774343125-7777 Q gi|254781004|r 270 RKGWKIFQTLISYMRRKI-KD-DYEEINTPQVLDQHLWQQSGHWDSYRANMFAVKCADDTIKDLRTFALKPMNCP-GHVA 346 (652) Q Consensus 270 P~G~~i~~~ie~~ir~~~-~~-G~~eV~tP~l~~~~Lw~~SGh~~~y~~~mf~~~~~~~~~~~~~~~~LkPmncp-~h~~ 346 (652) T Consensus 175 q~nLrlRS~~v~~iR~yl~n~~GFvevETPtLFkrT----Pg--------------------GA~EFvV-Ptr~~~g~FY 229 (628) T KOG2411 175 QNNLRLRSNVVKKIRRYLNNRHGFVEVETPTLFKRT----PG--------------------GAREFVV-PTRTPRGKFY 229 (628) T ss_pred HHHHHHHHHHHHHHHHHHHHHCCEEECCCCCHHCCC----CC--------------------CCCEEEC-CCCCCCCCEE T ss_conf 878999999999999998610473551572020148----88--------------------6412322-3678988555 Q ss_pred HHHHCCCCHHHCCH-----HHHHHEEEECCCCCCCCEEEEECCCCCCCCCE-EECCHHHHHHHHHHHH Q ss_conf 65201222231043-----20001000127876452000105635334421-0105376788789999 Q gi|254781004|r 347 VFNHGLKSYRELPV-----RLAEFGSVYRNEPSGSLHGLMRVRGFTQDDAH-VFCTKEQMFNECLKIH 408 (652) Q Consensus 347 i~~~~~~SYrdLPl-----rl~e~~~~~R~E~sg~l~GL~R~ReF~~~Dah-~F~~~eq~~~e~~~~~ 408 (652) T Consensus 230 aLpQSPQQfKQlLMvsGidrYyQiARCfRDEdlR~----DRQPEFTQvD~EMsF~~~~dim~liEdll 293 (628) T KOG2411 230 ALPQSPQQFKQLLMVSGIDRYYQIARCFRDEDLRA----DRQPEFTQVDMEMSFTDQEDIMKLIEDLL 293 (628) T ss_pred ECCCCHHHHHHHHHHHCHHHHHHHHHHHCCCCCCC----CCCCCCEEEEEEEECCCHHHHHHHHHHHH T ss_conf 36889899999998723036776776641345676----56876435444785367787899999999 |
|
| >pfam00152 tRNA-synt_2 tRNA synthetases class II (D, K and N) | Back alignment and domain information |
|---|
Probab=98.12 E-value=1.8e-05 Score=57.64 Aligned_cols=118 Identities=16% Similarity=0.178 Sum_probs=73.6 Q ss_pred HHHHHHHHHHHHHHHH-HCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCEEEECCCCHHHHHHHHHH Q ss_conf 7899999999999887-689638555432443100011210012555420100145677782377434312577776520 Q gi|254781004|r 272 GWKIFQTLISYMRRKI-KDDYEEINTPQVLDQHLWQQSGHWDSYRANMFAVKCADDTIKDLRTFALKPMNCPGHVAVFNH 350 (652) Q Consensus 272 G~~i~~~ie~~ir~~~-~~G~~eV~tP~l~~~~Lw~~SGh~~~y~~~mf~~~~~~~~~~~~~~~~LkPmncp~h~~i~~~ 350 (652) T Consensus 21 ~l~~Rs~i~~~iR~ff~~~~f~EV~TP~L~~~~---~e~~a-----~~F~~~~~-----~~~~~yL~~Spel~~k~ll~- 86 (341) T pfam00152 21 NLKLRSKIIRAIREFLDERGFLEVETPILTKST---PEGGA-----RDFLVPKF-----YAKEAYLPQSPQLYKQLLMV- 86 (341) T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCC---CCCCC-----CEEEECCC-----CCCCEEECCCHHHHHHHHHH- T ss_conf 999999999999999998898998798200558---98777-----66450267-----89823405488999999986- Q ss_pred CCCCHHHCCHHHHHHEEEECCCCC-CCCEEEEECCCCCCCCCE-EECCHHHHHHHHHHHHHHHHH Q ss_conf 122223104320001000127876-452000105635334421-010537678878999999887 Q gi|254781004|r 351 GLKSYRELPVRLAEFGSVYRNEPS-GSLHGLMRVRGFTQDDAH-VFCTKEQMFNECLKIHNLIIS 413 (652) Q Consensus 351 ~~~SYrdLPlrl~e~~~~~R~E~s-g~l~GL~R~ReF~~~Dah-~F~~~eq~~~e~~~~~~~~~~ 413 (652) T Consensus 87 ---~--g~-~rVfei~~~FR~E~~~t~r----H~~EFtmlE~y~a~~d~~d~m~~~E~li~~i~~ 141 (341) T pfam00152 87 ---A--GF-DRVFQIAPCFRDEDLRTDR----HPPEFTQLDLEMSFVDYEDVMDLTEDLIKYVFK 141 (341) T ss_pred ---C--CC-CCCEEEECHHCCCCCCCCC----CCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH T ss_conf ---5--88-7637972320279898865----507788776755359999999999999999999 |
|
| >PRK02983 lysS lysyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=98.08 E-value=2e-05 Score=57.26 Aligned_cols=115 Identities=17% Similarity=0.159 Sum_probs=68.2 Q ss_pred HHHHHHHHHHHHHHH-HCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCEEEECCCCHHHHHHHHHHC Q ss_conf 899999999999887-6896385554324431000112100125554201001456777823774343125777765201 Q gi|254781004|r 273 WKIFQTLISYMRRKI-KDDYEEINTPQVLDQHLWQQSGHWDSYRANMFAVKCADDTIKDLRTFALKPMNCPGHVAVFNHG 351 (652) Q Consensus 273 ~~i~~~ie~~ir~~~-~~G~~eV~tP~l~~~~Lw~~SGh~~~y~~~mf~~~~~~~~~~~~~~~~LkPmncp~h~~i~~~~ 351 (652) T Consensus 776 ~~~RS~Vi~aiR~~L~~~GFlEVETPiLq~~-----~GG-----A~ARPFlThsn--a~d~~~YLriA-----PELflKR 838 (1099) T PRK02983 776 IRARSAVLRAVRETLVAKGFLEVETPILQQI-----HGG-----ANARPFLTHIN--AYDLDLYLRIA-----PELYLKR 838 (1099) T ss_pred HHHHHHHHHHHHHHHHHCCCEEEECCCCCCC-----CCC-----CCCCCCCCCCC--CCCCCCEEECC-----HHHHHHH T ss_conf 9999999999999998789889557546778-----887-----56785301033--67866145148-----0899999 Q ss_pred CCCHHHCCHHHHHHEEEECCCCCCCCEEEEECCCCCCCCCE-EECCHHHHHHHHHHHHHH Q ss_conf 22223104320001000127876452000105635334421-010537678878999999 Q gi|254781004|r 352 LKSYRELPVRLAEFGSVYRNEPSGSLHGLMRVRGFTQDDAH-VFCTKEQMFNECLKIHNL 410 (652) Q Consensus 352 ~~SYrdLPlrl~e~~~~~R~E~sg~l~GL~R~ReF~~~Dah-~F~~~eq~~~e~~~~~~~ 410 (652) T Consensus 839 LmVG-Gf-eRVFEI~RcFRNEglra----dHnPEFTmLE~Y~Ay~Dyedmm~ltEeLi~~ 892 (1099) T PRK02983 839 LCVG-GV-ERVFELGRAFRNEGVDF----SHNPEFTLLEAYQAHADYLVMRDLCRELIQN 892 (1099) T ss_pred HHHC-CC-CCCEEECCCCCCCCCCC----CCCCCHHHHHHHHHHCCHHHHHHHHHHHHHH T ss_conf 9864-86-31134325446799998----7494079999999847899999999999999 |
|
| >PRK00476 aspS aspartyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
Probab=98.05 E-value=7.3e-06 Score=60.31 Aligned_cols=115 Identities=22% Similarity=0.300 Sum_probs=71.3 Q ss_pred HHHHHHHHHHHHHHHH-CCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCEEEECCCCHHHHHHHHHHC Q ss_conf 8999999999998876-896385554324431000112100125554201001456777823774343125777765201 Q gi|254781004|r 273 WKIFQTLISYMRRKIK-DDYEEINTPQVLDQHLWQQSGHWDSYRANMFAVKCADDTIKDLRTFALKPMNCPGHVAVFNHG 351 (652) Q Consensus 273 ~~i~~~ie~~ir~~~~-~G~~eV~tP~l~~~~Lw~~SGh~~~y~~~mf~~~~~~~~~~~~~~~~LkPmncp~h~~i~~~~ 351 (652) T Consensus 142 fr~Rs~i~~~iR~fl~~~gFiEVeTPiL~~s~~---eG-A---~~--F~vps-r--~~~~~fyaL~-----qSPQLykq~ 204 (587) T PRK00476 142 LKLRSKVTSAIRNFLDDNGFLEIETPILTKSTP---EG-A---RD--YLVPS-R--VHPGKFYALP-----QSPQLFKQL 204 (587) T ss_pred HHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCC---CC-C---CC--CCCCC-C--CCCCCEECCC-----CCHHHHHHH T ss_conf 999999999999999975974004754325686---66-6---44--30131-0--5788551356-----797999999 Q ss_pred C-CCHHHCCHHHHHHEEEECCCCCCCCEEEEECCCCCCCCCE-EECCHHHHHHHHHHHHHHH Q ss_conf 2-2223104320001000127876452000105635334421-0105376788789999998 Q gi|254781004|r 352 L-KSYRELPVRLAEFGSVYRNEPSGSLHGLMRVRGFTQDDAH-VFCTKEQMFNECLKIHNLI 411 (652) Q Consensus 352 ~-~SYrdLPlrl~e~~~~~R~E~sg~l~GL~R~ReF~~~Dah-~F~~~eq~~~e~~~~~~~~ 411 (652) T Consensus 205 L~vg--G~-erVyeig~~FRnE~~~t~----r~pEFt~lE~E~af~d~~dvm~~~E~li~~v 259 (587) T PRK00476 205 LMVA--GF-DRYYQIARCFRDEDLRAD----RQPEFTQIDIEMSFVTQEDVMDLMEGLIRHV 259 (587) T ss_pred HHHC--CC-CEEEEECCCCCCCCCCCC----CCCHHHEEEHHHHCCCHHHHHHHHHHHHHHH T ss_conf 8851--75-527996431238888766----6823423111111168999999999999999 |
|
| >PRK12445 lysyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=98.03 E-value=1e-05 Score=59.25 Aligned_cols=116 Identities=14% Similarity=0.177 Sum_probs=72.0 Q ss_pred HHHHHHHHHHHHHHHH-HCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCEEEECCCCHHHHHHHHHH Q ss_conf 7899999999999887-689638555432443100011210012555420100145677782377434312577776520 Q gi|254781004|r 272 GWKIFQTLISYMRRKI-KDDYEEINTPQVLDQHLWQQSGHWDSYRANMFAVKCADDTIKDLRTFALKPMNCPGHVAVFNH 350 (652) Q Consensus 272 G~~i~~~ie~~ir~~~-~~G~~eV~tP~l~~~~Lw~~SGh~~~y~~~mf~~~~~~~~~~~~~~~~LkPmncp~h~~i~~~ 350 (652) T Consensus 183 ~~~~Rs~ii~~iR~~l~~~gF~EVeTPil~~~----~gGa-~---Arpf~t~~----~~~~~~~yL~qS-----PQLykk 245 (505) T PRK12445 183 TFVVRSKILAAIRQFMVARGFMEVETPMMQVI----PGGA-S---ARPFITHH----NALDLDMYLRIA-----PELYLK 245 (505) T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCCCCCC----CCCC-C---CCEEEECC----CCCCCCEEECCC-----CHHHHH T ss_conf 99999999999999999779389978875554----5876-6---61033046----678867434169-----399999 Q ss_pred CC-CCHHHCCHHHHHHEEEECCCCCCCCEEEEECCCCCCCCCE-EECCHHHHHHHHHHHHHHH Q ss_conf 12-2223104320001000127876452000105635334421-0105376788789999998 Q gi|254781004|r 351 GL-KSYRELPVRLAEFGSVYRNEPSGSLHGLMRVRGFTQDDAH-VFCTKEQMFNECLKIHNLI 411 (652) Q Consensus 351 ~~-~SYrdLPlrl~e~~~~~R~E~sg~l~GL~R~ReF~~~Dah-~F~~~eq~~~e~~~~~~~~ 411 (652) T Consensus 246 ~Lmvg--Gf-dRvfeI~r~FRnE~~~~----~H~PEFT~lE~e~af~d~~dvm~l~E~li~~i 301 (505) T PRK12445 246 RLVVG--GF-ERVFEINRNFRNEGISV----RHNPEFTMMELYMAYADYHDLIELTESLFRTL 301 (505) T ss_pred HHHHC--CC-CCEEEHHHHHHCCCCCC----CCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHH T ss_conf 99857--97-44576278760788886----65444543568763278989999999999999 |
|
| >cd00776 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class II core domain | Back alignment and domain information |
|---|
Probab=97.93 E-value=4.4e-05 Score=54.89 Aligned_cols=114 Identities=18% Similarity=0.306 Sum_probs=69.0 Q ss_pred HHHHHHHHHHHHHHHH-HCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCEEEECCCCHHHHHHHHHH Q ss_conf 7899999999999887-689638555432443100011210012555420100145677782377434312577776520 Q gi|254781004|r 272 GWKIFQTLISYMRRKI-KDDYEEINTPQVLDQHLWQQSGHWDSYRANMFAVKCADDTIKDLRTFALKPMNCPGHVAVFNH 350 (652) Q Consensus 272 G~~i~~~ie~~ir~~~-~~G~~eV~tP~l~~~~Lw~~SGh~~~y~~~mf~~~~~~~~~~~~~~~~LkPmncp~h~~i~~~ 350 (652) T Consensus 23 ~l~~Rs~i~~~iR~fl~~~gF~EVeTP~L~~~~~---eg~a~-----~f~~~~------~~~~~yL~~Sp-----el~Kq 83 (322) T cd00776 23 IFRIRSEVLRAFREFLRENGFTEVHTPKITSTDT---EGGAE-----LFKVSY------FGKPAYLAQSP-----QLYKE 83 (322) T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCC---CCCCC-----CCCCCC------CCCCEEECCCH-----HHHHH T ss_conf 9999999999999999988999997984007889---86546-----676210------58760015485-----88999 Q ss_pred CCCCHHHCCHHHHHHEEEECCCCCCCCEEEEECCCCCCCCCE-EEC-CHHHHHHHHHHHHHH Q ss_conf 122223104320001000127876452000105635334421-010-537678878999999 Q gi|254781004|r 351 GLKSYRELPVRLAEFGSVYRNEPSGSLHGLMRVRGFTQDDAH-VFC-TKEQMFNECLKIHNL 410 (652) Q Consensus 351 ~~~SYrdLPlrl~e~~~~~R~E~sg~l~GL~R~ReF~~~Dah-~F~-~~eq~~~e~~~~~~~ 410 (652) T Consensus 84 lli~--G~~-rVfei~~~FR~E~~~t~---rH~pEFTmlE~e~af~~d~~d~m~~~E~li~~ 139 (322) T cd00776 84 MLIA--ALE-RVYEIGPVFRAEKSNTR---RHLSEFWMLEAEMAFIEDYNEVMDLIEELIKY 139 (322) T ss_pred HHHC--CCC-CEEEECCEEECCCCCCC---CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH T ss_conf 9753--424-43887261407999875---34788876525552332899999999999999 |
Assignment to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs in the core domain. This family includes AsnRS as well as a subgroup of AspRS. AsnRS and AspRS are homodimers, which attach either asparagine or aspartate to the 3'OH group of ribose of the appropriate tRNA. While archaea lack asnRS, they possess a non-discriminating aspRS, which can mischarge Asp-tRNA with Asn. Subsequently, a tRNA-dependent aspartate amidotransferase converts the bound aspartate to asparagine. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. |
| >cd00669 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase class II core domain | Back alignment and domain information |
|---|
Probab=97.91 E-value=6.1e-05 Score=53.94 Aligned_cols=115 Identities=19% Similarity=0.201 Sum_probs=72.9 Q ss_pred HHHHHHHHHHHHHHH-HCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCEEEECCCCHHHHHH-HHHH Q ss_conf 899999999999887-68963855543244310001121001255542010014567778237743431257777-6520 Q gi|254781004|r 273 WKIFQTLISYMRRKI-KDDYEEINTPQVLDQHLWQQSGHWDSYRANMFAVKCADDTIKDLRTFALKPMNCPGHVA-VFNH 350 (652) Q Consensus 273 ~~i~~~ie~~ir~~~-~~G~~eV~tP~l~~~~Lw~~SGh~~~y~~~mf~~~~~~~~~~~~~~~~LkPmncp~h~~-i~~~ 350 (652) T Consensus 1 lr~Rs~i~~~iR~ff~~~~f~EV~TP~l~~~~---~~~~-----~~~f~~~~~----~~~~~~~L~~S-pel~~k~ll~~ 67 (269) T cd00669 1 FKVRSKIIKAIRDFMDDRGFLEVETPMLQKIT---GGAG-----ARPFLVKYN----ALGLDYYLRIS-PQLFKKRLMVG 67 (269) T ss_pred CCHHHHHHHHHHHHHHHCCCEEEECCEEECCC---CCCC-----CCEEEEECC----CCCCEEEECCC-HHHHHHHHHHC T ss_conf 91699999999999998898998798530578---9876-----742573137----89940773438-89999999865 Q ss_pred CCCCHHHCCHHHHHHEEEECCCCCCCCEEEEECCCCCCCCCE-EECCHHHHHHHHHHHHHHH Q ss_conf 122223104320001000127876452000105635334421-0105376788789999998 Q gi|254781004|r 351 GLKSYRELPVRLAEFGSVYRNEPSGSLHGLMRVRGFTQDDAH-VFCTKEQMFNECLKIHNLI 411 (652) Q Consensus 351 ~~~SYrdLPlrl~e~~~~~R~E~sg~l~GL~R~ReF~~~Dah-~F~~~eq~~~e~~~~~~~~ 411 (652) T Consensus 68 ------g~-~~if~i~~~FR~e~~~~r----H~~EFtmlE~y~~~~d~~~~m~~~e~li~~~ 118 (269) T cd00669 68 ------GL-DRVFEINRNFRNEDLRAR----HQPEFTMMDLEMAFADYEDVIELTERLVRHL 118 (269) T ss_pred ------CC-CCEEEEECCCCCCCCCCC----CCHHHHHHHHHCCCCCHHHHHHHHHHHHHHH T ss_conf ------88-867998462107898655----4348775787514899999999999999999 |
This domain is the core catalytic domain of class II aminoacyl-tRNA synthetases of the subgroup containing aspartyl, lysyl, and asparaginyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. Nearly all class II tRNA synthetases are dimers and enzymes in this subgroup are homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. |
| >cd00777 AspRS_core Asp tRNA synthetase (aspRS) class II core domain | Back alignment and domain information |
|---|
Probab=97.88 E-value=4.2e-05 Score=55.05 Aligned_cols=117 Identities=19% Similarity=0.265 Sum_probs=70.5 Q ss_pred HHHHHHHHHHHHHHH-HCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCEEEECCCCHHHHHHHHHHC Q ss_conf 899999999999887-6896385554324431000112100125554201001456777823774343125777765201 Q gi|254781004|r 273 WKIFQTLISYMRRKI-KDDYEEINTPQVLDQHLWQQSGHWDSYRANMFAVKCADDTIKDLRTFALKPMNCPGHVAVFNHG 351 (652) Q Consensus 273 ~~i~~~ie~~ir~~~-~~G~~eV~tP~l~~~~Lw~~SGh~~~y~~~mf~~~~~~~~~~~~~~~~LkPmncp~h~~i~~~~ 351 (652) T Consensus 1 lr~Rs~i~~~iR~ff~~~gflEV~TPiL~~~~----~ega-----~~f~~~~---~~~~~~~~~L~~Sp-e----l~~k~ 63 (280) T cd00777 1 LRLRSRVIKAIRNFLDEQGFVEIETPILTKST----PEGA-----RDFLVPS---RLHPGKFYALPQSP-Q----LFKQL 63 (280) T ss_pred CCHHHHHHHHHHHHHHHCCCEEEECCCCCCCC----CCCC-----CCCEECC---CCCCCCCCCCCCCH-H----HHHHH T ss_conf 96699999999999998898998798106878----7767-----6644244---16887603688798-9----99999 Q ss_pred CCCHHHCCHHHHHHEEEECCCCCCCCEEEEECCCCCCCCCE-EECCHHHHHHHHHHHHHHHH Q ss_conf 22223104320001000127876452000105635334421-01053767887899999988 Q gi|254781004|r 352 LKSYRELPVRLAEFGSVYRNEPSGSLHGLMRVRGFTQDDAH-VFCTKEQMFNECLKIHNLII 412 (652) Q Consensus 352 ~~SYrdLPlrl~e~~~~~R~E~sg~l~GL~R~ReF~~~Dah-~F~~~eq~~~e~~~~~~~~~ 412 (652) T Consensus 64 l~~-~g~-~rvf~i~~~FR~E~~~~~----h~~EFtmLE~e~~~~~~~d~m~~~E~li~~i~ 119 (280) T cd00777 64 LMV-SGF-DRYFQIARCFRDEDLRAD----RQPEFTQIDIEMSFVDQEDIMSLIEGLLKYVF 119 (280) T ss_pred HHH-CCC-CCCEEEECEECCCCCCCC----CCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH T ss_conf 985-687-775798451747888876----63477623442268889999999999999999 |
Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. AspRS is a homodimer, which attaches a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. AspRS in this family differ from those found in the AsxRS family by a GAD insert in the core domain. |
| >COG2269 Truncated, possibly inactive, lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00033 Score=48.83 Aligned_cols=133 Identities=20% Similarity=0.262 Sum_probs=88.8 Q ss_pred CCEEEEECCH----HHHHHHHHHHHHHHH-HCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCEEEEC Q ss_conf 7435650107----899999999999887-68963855543244310001121001255542010014567778237743 Q gi|254781004|r 263 SGVIFWHRKG----WKIFQTLISYMRRKI-KDDYEEINTPQVLDQHLWQQSGHWDSYRANMFAVKCADDTIKDLRTFALK 337 (652) Q Consensus 263 ~G~~~wlP~G----~~i~~~ie~~ir~~~-~~G~~eV~tP~l~~~~Lw~~SGh~~~y~~~mf~~~~~~~~~~~~~~~~Lk 337 (652) T Consensus 2 ~~~~~W~p~~~~~~ll~Ra~i~~~iR~FF~erg~lEVeTp~Ls~a~vt--d~hL~~F~Te~~~-----~~~~~~~~l~L~ 74 (322) T COG2269 2 SETPWWQPSASIDNLLKRAAIIAAIRRFFAERGVLEVETPALSVAPVT--DIHLHPFETEFLG-----PGGAKGKPLWLH 74 (322) T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEECCHHHHCCCCC--CCCEEEEEEEEEC-----CCCCCCCEEEEE T ss_conf 988768888888999989999999999998769258533676507898--6423445667654-----676665303665 Q ss_pred CCCHHHHHHHHHHCCCCHHHCCHHHHHHEEEECCCCCCCCEEEEECCCCCCCCCE-EECCHHHHHHHHHHHHHHHHH Q ss_conf 4312577776520122223104320001000127876452000105635334421-010537678878999999887 Q gi|254781004|r 338 PMNCPGHVAVFNHGLKSYRELPVRLAEFGSVYRNEPSGSLHGLMRVRGFTQDDAH-VFCTKEQMFNECLKIHNLIIS 413 (652) Q Consensus 338 Pmncp~h~~i~~~~~~SYrdLPlrl~e~~~~~R~E~sg~l~GL~R~ReF~~~Dah-~F~~~eq~~~e~~~~~~~~~~ 413 (652) T Consensus 75 TSPEy~mKrLLAag~~-------~ifql~kvfRN~E~G~~H----~PEFTMLEWYrv~~d~~~lm~e~~~Ll~~vl~ 140 (322) T COG2269 75 TSPEYHMKRLLAAGSG-------PIFQLGKVFRNEEMGRLH----NPEFTMLEWYRVGCDYYRLMNEVDDLLQLVLE 140 (322) T ss_pred CCCHHHHHHHHHCCCC-------CCHHHHHHHHCCCCCCCC----CCCEEEEEEECCCCCHHHHHHHHHHHHHHHHH T ss_conf 6807778999975488-------601454777263325667----98436765100678599999999999999970 |
|
| >TIGR02367 PylS pyrrolysyl-tRNA synthetase; InterPro: IPR012739 PylS is the archaeal enzyme responsible for charging the pyrrolysine tRNA, PylT, by ligating a free molecule of pyrrolysine | Back alignment and domain information |
|---|
Probab=97.58 E-value=3.1e-05 Score=55.93 Aligned_cols=124 Identities=18% Similarity=0.297 Sum_probs=83.1 Q ss_pred HHHHHHHHHHHH-HHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCEEEECCCCHHHHHHHHHHCC Q ss_conf 999999999998-8768963855543244310001121001255542010014567778237743431257777652012 Q gi|254781004|r 274 KIFQTLISYMRR-KIKDDYEEINTPQVLDQHLWQQSGHWDSYRANMFAVKCADDTIKDLRTFALKPMNCPGHVAVFNHGL 352 (652) Q Consensus 274 ~i~~~ie~~ir~-~~~~G~~eV~tP~l~~~~Lw~~SGh~~~y~~~mf~~~~~~~~~~~~~~~~LkPmncp~h~~i~~~~~ 352 (652) T Consensus 240 ~ylGkler~it~ffvdrGfleiksPiliP~ey~ermGi-~ndte------lskqifrvdkn~ClrPmlaP~lynylrkld 312 (453) T TIGR02367 240 DYLGKLEREITKFFVDRGFLEIKSPILIPLEYVERMGI-DNDTE------LSKQIFRVDKNLCLRPMLAPTLYNYLRKLD 312 (453) T ss_pred HHHHHHHHHHHHHHHHCCEEEECCCCCCCHHHHHHCCC-CCCHH------HHHHHHHHHHHHHCCCCHHHHHHHHHHHHH T ss_conf 67546766676665312402323631010568865077-64025------666666441001012100056899999987 Q ss_pred CCHHHCCHHHHHHEEEECCCCCCCCEEEEECCCCCCCC---CEEECCHHHHHHHHHHHHH Q ss_conf 22231043200010001278764520001056353344---2101053767887899999 Q gi|254781004|r 353 KSYRELPVRLAEFGSVYRNEPSGSLHGLMRVRGFTQDD---AHVFCTKEQMFNECLKIHN 409 (652) Q Consensus 353 ~SYrdLPlrl~e~~~~~R~E~sg~l~GL~R~ReF~~~D---ah~F~~~eq~~~e~~~~~~ 409 (652) T Consensus 313 r~lP~-Pik~fe~GPCyrkesdG----kehleeftm~nfCqmGsGCtrenle~~i~~fl~ 367 (453) T TIGR02367 313 RILPD-PIKVFEVGPCYRKESDG----KEHLEEFTMLNFCQMGSGCTRENLEALIKEFLD 367 (453) T ss_pred HHCCC-CEEEEEECCCCCCCCCC----HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH T ss_conf 53789-64798606752435653----356666665554314787326779999999887 |
Pyrrolysine is encoded at an in-frame UAG (amber) at least in several corrinoid-dependent methyltransferases of the archaeal genera Methanosarcina and Methanococcoides, e.g. trimethylamine methyltransferase. . |
| >COG1190 LysU Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0085 Score=39.15 Aligned_cols=131 Identities=19% Similarity=0.232 Sum_probs=75.1 Q ss_pred HHHCCEEEECCCCCCEEEEECCHHHHHHHHHHHHHHHHH-CCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCC Q ss_conf 411440442267874356501078999999999998876-8963855543244310001121001255542010014567 Q gi|254781004|r 250 AREMDLFHIAEDGSGVIFWHRKGWKIFQTLISYMRRKIK-DDYEEINTPQVLDQHLWQQSGHWDSYRANMFAVKCADDTI 328 (652) Q Consensus 250 g~~~~lf~~~~~~~G~~~wlP~G~~i~~~ie~~ir~~~~-~G~~eV~tP~l~~~~Lw~~SGh~~~y~~~mf~~~~~~~~~ 328 (652) T Consensus 165 ~RylDLi~N~e~--------r~~f~~Rs~ii~~iR~fl~~~gFlEVETP~lq~i~-----GGA~A-rP--F~T--hhN-- 224 (502) T COG1190 165 QRYLDLIVNPES--------RQTFIKRSKIIRAIREFLDDRGFLEVETPMLQPIP-----GGAAA-RP--FIT--HHN-- 224 (502) T ss_pred HHHHHHHCCHHH--------HHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCC-----CCCCC-CC--CEE--EEC-- T ss_conf 888898659999--------99999999999999999987797584160003557-----87322-65--012--202-- Q ss_pred CCCCEEEECCCCHHHHHHHHHHCCCCHHHCCHHHHHHEEEECCCCCCCCEEEEECCCCCCCCCEEECCHHHHHHHHHHHH Q ss_conf 77823774343125777765201222231043200010001278764520001056353344210105376788789999 Q gi|254781004|r 329 KDLRTFALKPMNCPGHVAVFNHGLKSYRELPVRLAEFGSVYRNEPSGSLHGLMRVRGFTQDDAHVFCTKEQMFNECLKIH 408 (652) Q Consensus 329 ~~~~~~~LkPmncp~h~~i~~~~~~SYrdLPlrl~e~~~~~R~E~sg~l~GL~R~ReF~~~Dah~F~~~eq~~~e~~~~~ 408 (652) T Consensus 225 ald~dlyLRIApE----LyLKRliVG--G~-erVfEIgr~FRNEGid~t----HNPEFTmlE~Y------~AYaDy~D~m 287 (502) T COG1190 225 ALDMDLYLRIAPE----LYLKRLIVG--GF-ERVFEIGRNFRNEGIDTT----HNPEFTMLEFY------QAYADYEDLM 287 (502) T ss_pred CCCCCEEEEECCH----HHHHHHHHC--CC-HHHEEECCCCCCCCCCCC----CCCCHHHHHHH------HHHHHHHHHH T ss_conf 3677568762418----999988753--72-142230552003787666----48423568999------9985799999 Q ss_pred HHHHHHHHH Q ss_conf 998876655 Q gi|254781004|r 409 NLIISIYKD 417 (652) Q Consensus 409 ~~~~~v~~~ 417 (652) T Consensus 288 ~ltE~Li~~ 296 (502) T COG1190 288 DLTEELIKE 296 (502) T ss_pred HHHHHHHHH T ss_conf 999999999 |
|
| >COG0017 AsnS Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.015 Score=37.43 Aligned_cols=112 Identities=17% Similarity=0.286 Sum_probs=71.9 Q ss_pred HHHHHHHHHHHHHHH-HCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCEEEECCCCHHHHHHHHHHC Q ss_conf 899999999999887-6896385554324431000112100125554201001456777823774343125777765201 Q gi|254781004|r 273 WKIFQTLISYMRRKI-KDDYEEINTPQVLDQHLWQQSGHWDSYRANMFAVKCADDTIKDLRTFALKPMNCPGHVAVFNHG 351 (652) Q Consensus 273 ~~i~~~ie~~ir~~~-~~G~~eV~tP~l~~~~Lw~~SGh~~~y~~~mf~~~~~~~~~~~~~~~~LkPmncp~h~~i~~~~ 351 (652) T Consensus 134 ~kirs~i~~a~~eff~~~gF~eV~tP~i~~~~~E--------Gg~elF~v~yf------~~~a~Lt-----qS~QLyke~ 194 (435) T COG0017 134 FKIRSSILRAIREFFYENGFTEVHTPIITASATE--------GGGELFKVDYF------DKEAYLT-----QSPQLYKEA 194 (435) T ss_pred HHHHHHHHHHHHHHHHHCCCEEECCCEEECCCCC--------CCCEEEEEEEC------CCCEEEE-----CCHHHHHHH T ss_conf 9499999999999997589589659468534789--------98505777506------8566771-----478899999 Q ss_pred CCCHHHCCHHHHHHEEEECCCCCCCCEEEEECCCCCCCCCE-EECCHHHHHHHHHHHHH Q ss_conf 22223104320001000127876452000105635334421-01053767887899999 Q gi|254781004|r 352 LKSYRELPVRLAEFGSVYRNEPSGSLHGLMRVRGFTQDDAH-VFCTKEQMFNECLKIHN 409 (652) Q Consensus 352 ~~SYrdLPlrl~e~~~~~R~E~sg~l~GL~R~ReF~~~Dah-~F~~~eq~~~e~~~~~~ 409 (652) T Consensus 195 ~~~a--l-~rVf~igP~FRAE~s~T~R---HL~EF~~ld~Emaf~~~~d~m~l~E~~i~ 247 (435) T COG0017 195 LAAA--L-ERVFTIGPTFRAEKSNTRR---HLSEFWMLDPEMAFADLNDVMDLAEELIK 247 (435) T ss_pred HHHH--H-CCEEEECCCEECCCCCCCC---HHHHHHEECCEECCCCHHHHHHHHHHHHH T ss_conf 9998--5-7648956725547789700---36667330211136768889999999999 |
|
| >KOG1885 consensus | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.025 Score=35.91 Aligned_cols=97 Identities=23% Similarity=0.262 Sum_probs=57.2 Q ss_pred HHHHHHHHHHHHHHH-HCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCEEEECCCCHHHHHHHHHHC Q ss_conf 899999999999887-6896385554324431000112100125554201001456777823774343125777765201 Q gi|254781004|r 273 WKIFQTLISYMRRKI-KDDYEEINTPQVLDQHLWQQSGHWDSYRANMFAVKCADDTIKDLRTFALKPMNCPGHVAVFNHG 351 (652) Q Consensus 273 ~~i~~~ie~~ir~~~-~~G~~eV~tP~l~~~~Lw~~SGh~~~y~~~mf~~~~~~~~~~~~~~~~LkPmncp~h~~i~~~~ 351 (652) T Consensus 225 f~~RakII~~iRkfld~rgFlEVETPmmn~i-----aGGA~A-k--PFIT--~hn--dldm~LylRiAPEL~lK~LvVGG 292 (560) T KOG1885 225 FRIRAKIISYIRKFLDSRGFLEVETPMMNMI-----AGGATA-K--PFIT--HHN--DLDMDLYLRIAPELYLKMLVVGG 292 (560) T ss_pred HHHHHHHHHHHHHHHHHCCCEEECCHHHCCC-----CCCCCC-C--CEEE--CCC--CCCCCEEEEECHHHHHHHHHHCC T ss_conf 9999999999999865449568444655254-----686325-7--6043--145--56755145636599999898601 Q ss_pred CCCHHHCCHHHHHHEEEECCCCCCCCEEEEECCCCCCCCCE Q ss_conf 22223104320001000127876452000105635334421 Q gi|254781004|r 352 LKSYRELPVRLAEFGSVYRNEPSGSLHGLMRVRGFTQDDAH 392 (652) Q Consensus 352 ~~SYrdLPlrl~e~~~~~R~E~sg~l~GL~R~ReF~~~Dah 392 (652) T Consensus 293 l-------drVYEIGr~FRNEGI----DlTHNPEFTTcEfY 322 (560) T KOG1885 293 L-------DRVYEIGRQFRNEGI----DLTHNPEFTTCEFY 322 (560) T ss_pred H-------HHHHHHHHHHHHCCC----CCCCCCCCCHHHHH T ss_conf 7-------899998787630576----65458774218999 |
|
| >TIGR00462 genX lysyl-tRNA synthetase homolog GenX; InterPro: IPR004525 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.16 Score=30.37 Aligned_cols=119 Identities=17% Similarity=0.188 Sum_probs=63.5 Q ss_pred HHHHHHHHHHHHH-HCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCEEEECCCCHHHHHHHHHHCCC Q ss_conf 9999999999887-689638555432443100011210012555420100145677782377434312577776520122 Q gi|254781004|r 275 IFQTLISYMRRKI-KDDYEEINTPQVLDQHLWQQSGHWDSYRANMFAVKCADDTIKDLRTFALKPMNCPGHVAVFNHGLK 353 (652) Q Consensus 275 i~~~ie~~ir~~~-~~G~~eV~tP~l~~~~Lw~~SGh~~~y~~~mf~~~~~~~~~~~~~~~~LkPmncp~h~~i~~~~~~ 353 (652) T Consensus 23 kRa~~i~~iR~FF~e~G~~EV~TP~l~~~~~~D--~~l~p~~~~~-----l~~g~~~~~~~WL~-TSPEY~M---K~LL~ 91 (330) T TIGR00462 23 KRAKIIAEIRKFFKERGLLEVETPLLSDFPVTD--LHLEPFKTEF-----LEPGGEQNKVLWLS-TSPEYHM---KRLLS 91 (330) T ss_pred HHHHHHHHHHHHHHHCCCEEECCCCHHCCCCCC--EEEEEEEEEE-----ECCCCCCCCEECCC-CCCCHHH---HHHHH T ss_conf 899999999998861784253263010156443--0221368888-----42665333312114-5872789---99986 Q ss_pred CHHHCCHHHHHHEEEECCCCCCCCEEEEECCCCCCCCCEEE-CCHHHHHHHHHHHHHHH Q ss_conf 22310432000100012787645200010563533442101-05376788789999998 Q gi|254781004|r 354 SYRELPVRLAEFGSVYRNEPSGSLHGLMRVRGFTQDDAHVF-CTKEQMFNECLKIHNLI 411 (652) Q Consensus 354 SYrdLPlrl~e~~~~~R~E~sg~l~GL~R~ReF~~~Dah~F-~~~eq~~~e~~~~~~~~ 411 (652) T Consensus 92 ~~~---~~iFQi~k~FRN~E~G~~----H~~EF~MLEWY~~~~d~~~Li~E~~~LL~~~ 143 (330) T TIGR00462 92 AGK---GPIFQITKVFRNEEAGRL----HNPEFTMLEWYRPHYDMLRLINEVDDLLQQL 143 (330) T ss_pred HCC---CCEEEEEEHHHHCCCCCC----CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 217---862310000100024675----7753100111211023899999999999997 |
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases . This entry represents lysyl-tRNA synthetases from bacteria, as well as other related proteins. Escherichia coli, Haemophilus influenzae, and Aquifex aeolicus each have a protein closely homologous to the C-terminal region of lysyl-tRNA synthetase (LysS). Multiple sequence alignment of these proteins with the homologous regions of collected LysS proteins shows that these proteins form a distinct set rather than just similar truncations of LysS, so they appear to be orthologous. The protein is termed PoxA or GenX after its designation in E. coli. Its function is unknown.; GO: 0000166 nucleotide binding, 0004824 lysine-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006430 lysyl-tRNA aminoacylation, 0005737 cytoplasm. |
| >TIGR00471 pheT_arch phenylalanyl-tRNA synthetase, beta subunit; InterPro: IPR004531 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=93.84 E-value=0.068 Score=32.90 Aligned_cols=115 Identities=15% Similarity=0.150 Sum_probs=73.0 Q ss_pred ECCCCCCEEEEECCHHHH---HHHHHHHHHHHHH-CCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCE Q ss_conf 226787435650107899---9999999998876-896385554324431000112100125554201001456777823 Q gi|254781004|r 258 IAEDGSGVIFWHRKGWKI---FQTLISYMRRKIK-DDYEEINTPQVLDQHLWQQSGHWDSYRANMFAVKCADDTIKDLRT 333 (652) Q Consensus 258 ~~~~~~G~~~wlP~G~~i---~~~ie~~ir~~~~-~G~~eV~tP~l~~~~Lw~~SGh~~~y~~~mf~~~~~~~~~~~~~~ 333 (652) T Consensus 373 ~~~~~pE~P~~~t~g~~~Plp~~~~~~~~R~~mvG~GF~EVi~l~L~s~~-------------~~~~~mR~~d~~~k~~v 439 (605) T TIGR00471 373 YNNIEPELPKILTIGRLKPLPLEKVSDIIREIMVGLGFQEVISLTLTSEE-------------VLFKRMRIEDNNFKLAV 439 (605) T ss_pred HHCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHCCCCCHH-------------HHHHHHCCCCCCCHHHH T ss_conf 21068777712222104888777887576542204704342410047806-------------99998075788720033 Q ss_pred EEECCCCHHHHHH--------HHHHCCCCHHHCCHHHHHHEEE-ECCCCCCCCEEEEECCCCC Q ss_conf 7743431257777--------6520122223104320001000-1278764520001056353 Q gi|254781004|r 334 FALKPMNCPGHVA--------VFNHGLKSYRELPVRLAEFGSV-YRNEPSGSLHGLMRVRGFT 387 (652) Q Consensus 334 ~~LkPmncp~h~~--------i~~~~~~SYrdLPlrl~e~~~~-~R~E~sg~l~GL~R~ReF~ 387 (652) T Consensus 440 ~V~~P~t~e~~~~R~SlLP~LLe~~~~Nk~~~lP~KiFE~GDVV~~d~~~er--k~~~~r~~~ 500 (605) T TIGR00471 440 KVANPLTLEYTIVRTSLLPGLLETLSENKHHELPQKIFEIGDVVVKDDDSER--KETRSRVVT 500 (605) T ss_pred HHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEECCCHHH--HHHCCEEEE T ss_conf 3117876233377656223678888651489988207887438882872012--230562555 |
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases . Phenylalanyl-tRNA synthetase (6.1.1.20 from EC) is an alpha2/beta2 tetramer composed of 2 subunits that belongs to class IIc. In eubacteria, a small subunit (pheS gene) can be designated as beta (E. coli) or alpha subunit (see IPR002319 from INTERPRO). Reciprocally the large subunit (pheT gene) can be designated as alpha (E. coli) or beta. In all other kingdoms the two subunits have equivalent length in eukaryota, and can be identified by specific signatures. The enzyme from Thermus thermophilus has an alpha 2 beta 2 type quaternary structure and is one of the most complicated members of the synthetase family. Identification of phenylalanyl-tRNA synthetase as a member of class II aaRSs was based only on sequence alignment of the small alpha-subunit with other synthetases . This family describes the beta subunit. The beta subunits break into two subfamilies that are considerably different in sequence, length, and pattern of gaps (see also IPR004532 from INTERPRO). This family represents the subfamily that includes the beta subunit from eukaryotic cytosol, the archaea, and spirochetes.; GO: 0000166 nucleotide binding, 0004826 phenylalanine-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006432 phenylalanyl-tRNA aminoacylation, 0005737 cytoplasm. |
| >pfam01409 tRNA-synt_2d tRNA synthetases class II core domain (F) | Back alignment and domain information |
|---|
Probab=91.07 E-value=1.3 Score=24.07 Aligned_cols=111 Identities=18% Similarity=0.289 Sum_probs=62.4 Q ss_pred HHHHHHHHHHHHHHHHH-CCCEEEECCCCCCC-----CCCCCCCCCCCCCCCCCEEECCCCCCCCCCEEEECCCCHHHHH Q ss_conf 78999999999998876-89638555432443-----1000112100125554201001456777823774343125777 Q gi|254781004|r 272 GWKIFQTLISYMRRKIK-DDYEEINTPQVLDQ-----HLWQQSGHWDSYRANMFAVKCADDTIKDLRTFALKPMNCPGHV 345 (652) Q Consensus 272 G~~i~~~ie~~ir~~~~-~G~~eV~tP~l~~~-----~Lw~~SGh~~~y~~~mf~~~~~~~~~~~~~~~~LkPmncp~h~ 345 (652) T Consensus 15 ~~HPi~~~~~~i~~~f~~~GF~~~~g~eves~~~NFDaLn~P~dHPaR~~~DTfy~~~----~~~~~~~vLRtHTS~~q~ 90 (243) T pfam01409 15 GLHPLTRVLEEIRDIFLSMGFEEVEGPEVESDFYNFDALNIPQDHPARDMQDTFYLKK----PLKARRLLLRTHTTPVQA 90 (243) T ss_pred CCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCEEEECC----CCCCCCEEECCCCCHHHH T ss_conf 8585999999999999877986876983564277777557898898767676034336----666768657687988999 Q ss_pred HHHHHCCCCHHHCCHHHHHHEEEECCCCCCCCEEEEECCCCCCCCCEEE Q ss_conf 7652012222310432000100012787645200010563533442101 Q gi|254781004|r 346 AVFNHGLKSYRELPVRLAEFGSVYRNEPSGSLHGLMRVRGFTQDDAHVF 394 (652) Q Consensus 346 ~i~~~~~~SYrdLPlrl~e~~~~~R~E~sg~l~GL~R~ReF~~~Dah~F 394 (652) T Consensus 91 r~l~----~~~~~p~r~~~~grvyR~d~~Da----tH~~~FhQ~Eg~vv 131 (243) T pfam01409 91 RTLA----EKNKPPIKIFSIGRVFRRDQVDA----THLPEFHQVEGLVV 131 (243) T ss_pred HHHH----HCCCCCEEEECCCEEEECCCCCC----CCCCEEEEEEEEEE T ss_conf 9997----42799848981431332588984----31531057557896 |
Other tRNA synthetase sub-families are too dissimilar to be included. This family includes only phenylalanyl-tRNA synthetases. This is the core catalytic domain. |
| >PRK10872 relA GDP/GTP pyrophosphokinase; Provisional | Back alignment and domain information |
|---|
Probab=98.18 E-value=4e-06 Score=62.08 Aligned_cols=25 Identities=28% Similarity=0.329 Sum_probs=16.1 Q ss_pred CCCEEE-----CCC------CCEEECCCCCCCHHHH Q ss_conf 542130-----257------5201000235521444 Q gi|254781004|r 169 ENVTLY-----RQG------EWFDLCRGPHVRSTGQ 193 (652) Q Consensus 169 ~~v~~y-----~~g------~~~Dlc~GphvpsTg~ 193 (652) T Consensus 177 ETl~IYAPLA~RLGi~~iK~ELEDLsF~~l~P~~y~ 212 (743) T PRK10872 177 ECTNIYAPLANRLGIGQLKWELEDYCFRYLHPTEYK 212 (743) T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCHHHHH T ss_conf 999999998774173999999999998622999999 |
|
| >PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=98.13 E-value=6.2e-06 Score=60.80 Aligned_cols=119 Identities=11% Similarity=0.118 Sum_probs=48.7 Q ss_pred CCEEECCCCCCCHHHH-HHHHHHHHHHHH-HCC--------C-CCCCCCEEEEEEEEEECCHHHHHHHHHHHHHHHHHHH Q ss_conf 5201000235521444-222333333211-101--------5-7756420689999983798899999999997532008 Q gi|254781004|r 178 EWFDLCRGPHVRSTGQ-VKKFFKLMKVAG-AYW--------R-GDSNRPMLSRIYGTAWNTQQELTQYLYFLEESEKRDH 246 (652) Q Consensus 178 ~~~Dlc~GphvpsTg~-ik~~fkL~~~sg-ayw--------~-gd~~~~~l~Riyg~af~~~~~l~~~~~~~eea~~rdH 246 (652) T Consensus 181 ELEDlsf~~l~P~~y~~i~~~l~~~~~~r~~~i~~~~~~l~~~L~~~~-i~~~v~gR---~K~~ySI~~Km~-----~k~ 251 (702) T PRK11092 181 ELEELGFEALYPNRYRVIKEVVKAARGNRKEMIQKILSEIEGRLQEAG-IPCRVSGR---EKHLYSIYCKMV-----LKE 251 (702) T ss_pred HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CEEEEEEC---CCCHHHHHHHHH-----HCC T ss_conf 999999987498999999999998766789999999999999999779-91599812---574737889987-----338 Q ss_pred HHHHHHCCEEEECCC-CCCEEEEECCHH--HH----HHHHHHHHHHHHHCCCEEEECCCCCCCCCC Q ss_conf 875411440442267-874356501078--99----999999999887689638555432443100 Q gi|254781004|r 247 RKLAREMDLFHIAED-GSGVIFWHRKGW--KI----FQTLISYMRRKIKDDYEEINTPQVLDQHLW 305 (652) Q Consensus 247 r~lg~~~~lf~~~~~-~~G~~~wlP~G~--~i----~~~ie~~ir~~~~~G~~eV~tP~l~~~~Lw 305 (652) T Consensus 252 ~~f~~i~Dl~a~RIiv~~~~~CY~~LG~iH~~~~pipgrfkDYIa~PK~NgYQSLHTtV~gp~g~~ 317 (702) T PRK11092 252 QRFHSIMDIYAFRVIVDDSDTCYRVLGQMHSLYKPRPGRVKDYIAIPKANGYQSLHTSMIGPHGVP 317 (702) T ss_pred CCCCCCCCHHHEEEEECCHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCEEEEEEECCCCCE T ss_conf 882321240016999688999999999999736879422665412789887301367633599957 |
|
| >COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription] | Back alignment and domain information |
|---|
Probab=98.04 E-value=2.1e-05 Score=57.14 Aligned_cols=12 Identities=8% Similarity=0.534 Sum_probs=4.5 Q ss_pred HHHHHHHHHCCC Q ss_conf 999999998798 Q gi|254781004|r 569 QEIANLLKSHHL 580 (652) Q Consensus 569 ~~i~~~L~~~gi 580 (652) T Consensus 642 ~~i~~~i~~~~~ 653 (701) T COG0317 642 RDVSQVLANEKI 653 (701) T ss_pred HHHHHHHHHCCC T ss_conf 999999985788 |
|
| >PRK06462 asparagine synthetase A; Reviewed | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00014 Score=51.53 Aligned_cols=146 Identities=15% Similarity=0.105 Sum_probs=83.6 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCEEEEECCHHHHHHHHHHHHHHHH-HCCCEEEECCCCCCCCCCCCC Q ss_conf 9999999999753200887541144044226787435650107899999999999887-689638555432443100011 Q gi|254781004|r 230 ELTQYLYFLEESEKRDHRKLAREMDLFHIAEDGSGVIFWHRKGWKIFQTLISYMRRKI-KDDYEEINTPQVLDQHLWQQS 308 (652) Q Consensus 230 ~l~~~~~~~eea~~rdHr~lg~~~~lf~~~~~~~G~~~wlP~G~~i~~~ie~~ir~~~-~~G~~eV~tP~l~~~~Lw~~S 308 (652) T Consensus 1 ~~~~~~~~~~~--~~~~r~~~------ir~~~-------~~~ifriRs~i~~~iR~f~~~~gF~EV~TPiL~~~~----~ 61 (332) T PRK06462 1 DLERYLKMIEE--WVRYSWKI------ISSEK-------YSLVLKIQSSILRYTREFLDGRGFVEVLPPIISPST----D 61 (332) T ss_pred CHHHHHHHHHH--HHHHHHHC------CCCHH-------HHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCC----C T ss_conf 94888878999--87302440------25878-------999999999999999999988899998797236778----8 Q ss_pred CCCCCCCCCCCEEECCCCCCCCCCEEEECCCCHHHHHHHHHHC-CCCHHHCCHHHHHHEEEECCCCCCCCEEEEECCCCC Q ss_conf 2100125554201001456777823774343125777765201-222231043200010001278764520001056353 Q gi|254781004|r 309 GHWDSYRANMFAVKCADDTIKDLRTFALKPMNCPGHVAVFNHG-LKSYRELPVRLAEFGSVYRNEPSGSLHGLMRVRGFT 387 (652) Q Consensus 309 Gh~~~y~~~mf~~~~~~~~~~~~~~~~LkPmncp~h~~i~~~~-~~SYrdLPlrl~e~~~~~R~E~sg~l~GL~R~ReF~ 387 (652) T Consensus 62 ~~~~----~~~~~~~----~~~~~~~~L~~Sp-----ql~lk~li~~--g~~-rVfeIg~~FR~E~~d~-~t~rHlpEFt 124 (332) T PRK06462 62 PLMG----DAKPASI----DFYGVEYYLADSM-----IFHKQLMLRL--LKG-KVFYLSPNFRLEPVDK-DTGRHLYEFT 124 (332) T ss_pred CCCC----CCCCCEE----ECCCCCEEECCCH-----HHHHHHHHHC--CCC-CEEEECCHHHCCCCCC-CCCCCCHHHH T ss_conf 7667----7601058----4489863314586-----9999999863--899-7799745231687776-7776545777 Q ss_pred CCCCEE-ECCHHHHHHHHHHHHHHH Q ss_conf 344210-105376788789999998 Q gi|254781004|r 388 QDDAHV-FCTKEQMFNECLKIHNLI 411 (652) Q Consensus 388 ~~Dah~-F~~~eq~~~e~~~~~~~~ 411 (652) T Consensus 125 ~lE~y~a~~d~~d~m~~~E~li~~i 149 (332) T PRK06462 125 QLDIEIEGADLEEVMSLAEDLIKYL 149 (332) T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHH T ss_conf 6558787389999999999999999 |
|
| >COG0016 PheS Phenylalanyl-tRNA synthetase alpha subunit [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.15 Score=30.45 Aligned_cols=158 Identities=13% Similarity=0.130 Sum_probs=91.2 Q ss_pred HHHHHHHHH--HHCCEEEECCCCCCEEEEECCHHHHHHHHHHHHHHHH-HCCCEEEECCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 320088754--1144044226787435650107899999999999887-6896385554324431000112100125554 Q gi|254781004|r 242 EKRDHRKLA--REMDLFHIAEDGSGVIFWHRKGWKIFQTLISYMRRKI-KDDYEEINTPQVLDQHLWQQSGHWDSYRANM 318 (652) Q Consensus 242 ~~rdHr~lg--~~~~lf~~~~~~~G~~~wlP~G~~i~~~ie~~ir~~~-~~G~~eV~tP~l~~~~Lw~~SGh~~~y~~~m 318 (652) T Consensus 78 ~~~~l~~~~~~~~l~~e~~dv~lp~~-~~~~G~~Hpl~~~~e~i~~iF~~mGF~~~~gp~-IE~d~~N--------FDaL 147 (335) T COG0016 78 LTPELEAAGLWERLAFEKIDVTLPGR-RIYPGSLHPLTQTIEEIEDIFLGMGFTEVEGPE-IETDFYN--------FDAL 147 (335) T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCC-CCCCCCCCHHHHHHHHHHHHHHHCCCEECCCCC-CCCCCCC--------HHHH T ss_conf 88999987898862215777578886-677898670899999999999974966645882-1320225--------2432 Q ss_pred CEEECCCCCCCCCC--------EEEECCCCHHHHHHHHHHCCCCHHHCCHHHHHHEEEECCCCCCCCEEEEECCCCCCCC Q ss_conf 20100145677782--------3774343125777765201222231043200010001278764520001056353344 Q gi|254781004|r 319 FAVKCADDTIKDLR--------TFALKPMNCPGHVAVFNHGLKSYRELPVRLAEFGSVYRNEPSGSLHGLMRVRGFTQDD 390 (652) Q Consensus 319 f~~~~~~~~~~~~~--------~~~LkPmncp~h~~i~~~~~~SYrdLPlrl~e~~~~~R~E~sg~l~GL~R~ReF~~~D 390 (652) T Consensus 148 n~P~dHPARdmqDTFy~~~~~~~~lLRTHTs~vq~R~l~~~~~~----P~k~~~~grvyR~D~~Da----THs~~FhQiE 219 (335) T COG0016 148 NIPQDHPARDMQDTFYLKDDREKLLLRTHTSPVQARTLAENAKI----PIKIFSPGRVYRNDTVDA----THSPEFHQIE 219 (335) T ss_pred CCCCCCCCCCCCCEEEECCCCCCEEECCCCCHHHHHHHHHCCCC----CCEEECCCCEECCCCCCC----CCCHHEEEEE T ss_conf 49999984124443787688773002366827659999847999----915845663411788776----4261013367 Q ss_pred CEEECCHHHHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 2101053767887899999988766552133 Q gi|254781004|r 391 AHVFCTKEQMFNECLKIHNLIISIYKDFGFE 421 (652) Q Consensus 391 ah~F~~~eq~~~e~~~~~~~~~~v~~~~g~~ 421 (652) T Consensus 220 Glvvd~----~~s~~~Lkg~L~~f~~~~fg~ 246 (335) T COG0016 220 GLVVDK----NISFADLKGTLEEFAKKFFGE 246 (335) T ss_pred EEEEEC----CCCHHHHHHHHHHHHHHHCCC T ss_conf 899958----956999999999999996377 |
|
| >PRK06253 O-phosphoseryl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.029 Score=35.46 Aligned_cols=69 Identities=14% Similarity=0.273 Sum_probs=47.8 Q ss_pred HHHCCHHHHHHEEEECCCCCCCCEEEEECCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCC Q ss_conf 2310432000100012787645200010563533442101053767887899999988766552133210001465 Q gi|254781004|r 355 YRELPVRLAEFGSVYRNEPSGSLHGLMRVRGFTQDDAHVFCTKEQMFNECLKIHNLIISIYKDFGFEKIMVKLSTR 430 (652) Q Consensus 355 YrdLPlrl~e~~~~~R~E~sg~l~GL~R~ReF~~~Dah~F~~~eq~~~e~~~~~~~~~~v~~~~g~~~~~~~ls~~ 430 (652) T Consensus 202 k~~~P~klFSIDRcFRrEq~---eD~~hL~~yhsascvv~~-ed---Vn~d~gkav~~~lL~~fGF~~frFrPdek 270 (527) T PRK06253 202 RKPLPFKLFSIDRCFRREQK---EDASRLMTYHSASCVVAG-ED---VTVDDGKAVAEGLLSQFGFTNFRFRPDEK 270 (527) T ss_pred CCCCCEEEEEEEHEEECHHH---CCHHHHHHHHEEEEEEEC-CC---CCHHHHHHHHHHHHHHHCCCEEEECCCCC T ss_conf 67998368741010220000---245563454432269975-98---66777799999999970975378434423 |
|
| >TIGR00457 asnS asparaginyl-tRNA synthetase; InterPro: IPR004522 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.098 Score=31.80 Aligned_cols=255 Identities=15% Similarity=0.189 Sum_probs=129.9 Q ss_pred HHHHHHHHHHHHHHH-HCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEECCCCC-----C---CCCCEEEECC----C Q ss_conf 899999999999887-6896385554324431000112100125554201001456-----7---7782377434----3 Q gi|254781004|r 273 WKIFQTLISYMRRKI-KDDYEEINTPQVLDQHLWQQSGHWDSYRANMFAVKCADDT-----I---KDLRTFALKP----M 339 (652) Q Consensus 273 ~~i~~~ie~~ir~~~-~~G~~eV~tP~l~~~~Lw~~SGh~~~y~~~mf~~~~~~~~-----~---~~~~~~~LkP----m 339 (652) T Consensus 146 mrvR~~l~~ai~~yF~~~gF~~V~~PilT~~d~-------EG-AGElF~v~TLdl~~lp~~~g~~df~~~fFgk~ayLTV 217 (495) T TIGR00457 146 MRVRNALSQAIHEYFQKNGFVKVSPPILTSNDC-------EG-AGELFKVSTLDLEKLPRNDGKIDFSKDFFGKEAYLTV 217 (495) T ss_pred HHHHHHHHHHHHHHHHCCCCEEECCCEEECCCC-------CC-CCCCCEEEEHHHHCCCCCCCCCCCCCCCCCCEEEEEE T ss_conf 999999999999876047867868863113688-------88-7543322003242153326888763024886012330 Q ss_pred CHHHHHHHHHHCCCCHHHCCHHHHHHEEEECCCCCCCCEEEEECCCCCCCCCE-EECCHHHHHHHHHHHHHHHH-HHHHH Q ss_conf 12577776520122223104320001000127876452000105635334421-01053767887899999988-76655 Q gi|254781004|r 340 NCPGHVAVFNHGLKSYRELPVRLAEFGSVYRNEPSGSLHGLMRVRGFTQDDAH-VFCTKEQMFNECLKIHNLII-SIYKD 417 (652) Q Consensus 340 ncp~h~~i~~~~~~SYrdLPlrl~e~~~~~R~E~sg~l~GL~R~ReF~~~Dah-~F~~~eq~~~e~~~~~~~~~-~v~~~ 417 (652) T Consensus 218 SGQL~~E~~A~AL~-------kvyTfGPTFRAEkS~T~---RHLsEFWMiEPE~AF~~l~d~~~~~E~~~k~~~k~VL~~ 287 (495) T TIGR00457 218 SGQLYAEAYALALS-------KVYTFGPTFRAEKSNTS---RHLSEFWMIEPEMAFANLNDLLQLIETLIKYIIKAVLEN 287 (495) T ss_pred CCHHHHHHHHHHHC-------CCEECCCCEECCCCCCC---CCHHHHHHHHHHEEECCHHHHHHHHHHHHHHHHHHHHCC T ss_conf 22789999999747-------81445874004286487---011122101120000013333899999999999998305 Q ss_pred --------HCCCCC---EECCCCC--------CCCCCCCHHHH---HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC Q ss_conf --------213321---0001465--------31125860357---7899999999985021212566752055555545 Q gi|254781004|r 418 --------FGFEKI---MVKLSTR--------PEKRVGSDALW---DDAENIMKGVLDTIKNSSQDRINTGVLLGEGAFY 475 (652) Q Consensus 418 --------~g~~~~---~~~ls~~--------~~~~~g~~~~~---~~ae~~l~~~l~~~~~~~~~~~~~~~~~g~~afy 475 (652) T Consensus 288 ~qellPkqfi~~~enn~~~~L~~~~~~~~~~~l~~~i~~~F~~i~Y~~Ai~iL~~~~~~~------~~~Fe~~d~---~w 358 (495) T TIGR00457 288 QQELLPKQFICSQENNLLKFLEKNFDKDLIKKLENIINNKFARITYTDAIEILKESDNKE------KKNFEYEDF---EW 358 (495) T ss_pred HHHHCCHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHCCCCEECHHHHHHHHHHHHHCC------CCCCCCCCC---CC T ss_conf 245042010377713799986641275677522566622676004789999987421114------643588861---34 Q ss_pred CCCCC----CCHHHHCCCCCCCCCCCHHHHCCCCCCCEEEEECCCEEEEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCC Q ss_conf 54321----10021103310012110111022346741673179721379964034103789999999973870887337 Q gi|254781004|r 476 GPKFE----YILKDAIGRDWQCGTIQVDFNLPSRFNAFYVNSHSEKCHPVMIHRAVFGSIERFIGIMIENFKGNLPLWLS 551 (652) Q Consensus 476 gpkid----~~~~d~~gr~~~~~tiq~df~~p~~f~l~y~~~dg~~~~pvmihr~~~Gs~eR~ia~liE~~~g~~P~wLA 551 (652) T Consensus 359 G~DL~~eHER~LaE~~Fk~q--Pvf--V~~YPk~~KaFYMk~NS~D~~tV~----a~-------------------DlL~ 411 (495) T TIGR00457 359 GIDLQTEHERFLAEEYFKPQ--PVF--VTDYPKDIKAFYMKLNSDDGKTVA----AV-------------------DLLA 411 (495) T ss_pred CCCCCHHHHHHHHHCCCCCC--CEE--EECCCCCCCCHHCCCCCCCCCEEE----EE-------------------EEEC T ss_conf 88863368998763158988--889--973885558010536678887478----99-------------------9837 Q ss_pred CEEE-EEEECCHHHHHHHHHHHHHHHHCCCEE Q ss_conf 8089-998579668999999999999879889 Q gi|254781004|r 552 PIQA-IVTTITSSAVEYAQEIANLLKSHHLSI 582 (652) Q Consensus 552 P~QV-~Iipi~e~~~eya~~i~~~L~~~girV 582 (652) T Consensus 412 P~GiGEIiGGS~Re~d-ld~L~~r~k~~g~d~ 442 (495) T TIGR00457 412 PKGIGEIIGGSEREDD-LDKLEERMKEMGLDT 442 (495) T ss_pred CCCEEEEECCCCCHHH-HHHHHHHHHHCCCCC T ss_conf 8962665167543226-899999999648688 |
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases . AsparaginyltRNA synthetase (6.1.1.22 from EC) is an alpha2 dimer that belongs to class IIb. There is a striking similarity between asparaginyl-tRNA synthetases and archaeal/eukaryotic type aspartyl-tRNA synthetases (IPR004523 from INTERPRO) and a striking divergence of bacterial type aspartyl-tRNA synthetases (IPR004524 from INTERPRO). This family, AsnS, represents asparaginyl-tRNA synthetases from the three domains of life. Some species lack this enzyme and charge tRNA(asn) by misacylation with Asp, followed by transamidation of Asp to Asn.; GO: 0000166 nucleotide binding, 0004816 asparagine-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006421 asparaginyl-tRNA aminoacylation, 0005737 cytoplasm. |
| >cd00769 PheRS_beta_core Phenylalanyl-tRNA synthetase (PheRS) beta chain core domain | Back alignment and domain information |
|---|
Probab=92.29 E-value=0.088 Score=32.14 Aligned_cols=91 Identities=18% Similarity=0.203 Sum_probs=59.6 Q ss_pred HHHHHHHHHHHHH-CCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCEEEECCCCHHHHHHHHHHCCCC Q ss_conf 9999999998876-896385554324431000112100125554201001456777823774343125777765201222 Q gi|254781004|r 276 FQTLISYMRRKIK-DDYEEINTPQVLDQHLWQQSGHWDSYRANMFAVKCADDTIKDLRTFALKPMNCPGHVAVFNHGLKS 354 (652) Q Consensus 276 ~~~ie~~ir~~~~-~G~~eV~tP~l~~~~Lw~~SGh~~~y~~~mf~~~~~~~~~~~~~~~~LkPmncp~h~~i~~~~~~S 354 (652) T Consensus 2 ~~~l~~~ir~~L~~~Gf~Ev~t~s~~~~~~~~~~~~~---~~~~i~l~N----Pls~e~~~lR~sLlp~LL~~~~~N~~- 73 (198) T cd00769 2 LQKLERKLRRLLAGLGFQEVITYSLTSPEEAELFDGG---LDEAVELSN----PLSEEYSVLRTSLLPGLLDALARNLN- 73 (198) T ss_pred HHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHCCC---CCCEEEEEC----CCCHHHHHHHHHHHHHHHHHHHHHCC- T ss_conf 6799999999999789714130676898999872488---787389708----86566889888779999999986505- Q ss_pred HHHCCHHHHHHEEEECCCCC Q ss_conf 23104320001000127876 Q gi|254781004|r 355 YRELPVRLAEFGSVYRNEPS 374 (652) Q Consensus 355 YrdLPlrl~e~~~~~R~E~s 374 (652) T Consensus 74 r~~~~~~lFEiG~vy~~~~~ 93 (198) T cd00769 74 RKNKPLRLFEIGRVFLKDED 93 (198) T ss_pred CCCCCCEEEEEEEEEECCCC T ss_conf 67777328997638966888 |
PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer. While the alpha chain contains a catalytic core domain, the beta chain has a non-catalytic core domain. |
| >PRK09616 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed | Back alignment and domain information |
|---|
Probab=91.45 E-value=0.52 Score=26.81 Aligned_cols=92 Identities=13% Similarity=0.138 Sum_probs=57.6 Q ss_pred HHHHHHHHHHHHHHHH-CCCEEEECCCCCCCCCC-CCCCCCCCCCCCCCEEECCCCCCCCCCEEEECCCCHHHHHHHHHH Q ss_conf 8999999999998876-89638555432443100-011210012555420100145677782377434312577776520 Q gi|254781004|r 273 WKIFQTLISYMRRKIK-DDYEEINTPQVLDQHLW-QQSGHWDSYRANMFAVKCADDTIKDLRTFALKPMNCPGHVAVFNH 350 (652) Q Consensus 273 ~~i~~~ie~~ir~~~~-~G~~eV~tP~l~~~~Lw-~~SGh~~~y~~~mf~~~~~~~~~~~~~~~~LkPmncp~h~~i~~~ 350 (652) T Consensus 355 ~~~~~~~~~~ir~~L~~~G~~Evitysf~s~~~~~~~~~~~~---~~~v~l~N----Pis~e~s~mRtsLlp~LL~~~~~ 427 (546) T PRK09616 355 LHPIEELSRAIRDLMVGLGFQEVMNFTLTSEEVLFEKMNLEE---DDPVEVLN----PISEDYTVLRTSLLPSLLEFLSI 427 (546) T ss_pred CCHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHCCCC---CCEEEECC----CCCHHHHHHHHHHHHHHHHHHHH T ss_conf 998999999999999968961276225689899987616886---87489648----87456777775538999999998 Q ss_pred CCCCHHHCCHHHHHHEEEECCCC Q ss_conf 12222310432000100012787 Q gi|254781004|r 351 GLKSYRELPVRLAEFGSVYRNEP 373 (652) Q Consensus 351 ~~~SYrdLPlrl~e~~~~~R~E~ 373 (652) T Consensus 428 N~~--r~~~~~lFEiG~Vf~~~~ 448 (546) T PRK09616 428 NKH--REYPQKIFEIGDVVLIDE 448 (546) T ss_pred HHC--CCCCEEEEEEECEEECCC T ss_conf 466--899845997405580488 |
|
Homologous Structures in PDB Database
Detected by PSI-BLAST, RPS-BLAST and HHsearch
Homologous Structures Detected by PSI-BLAST against Nonredundant Database
| Identity | Alignment graph | Length | Definition | E-value |
| Target | 652 | threonyl-tRNA synthetase [Candidatus Liberibacter asiat | ||
| 1qf6_A | 642 | Structure Of E. Coli Threonyl-Trna Synthetase Compl | 0.0 | |
| 1nyq_A | 645 | Structure Of Staphylococcus Aureus Threonyl-Trna Sy | 1e-174 | |
| 1evk_A | 401 | Crystal Structure Of A Truncated Form Of Threonyl-T | 1e-105 | |
| 1nj1_A | 501 | Crystal Structure Of Prolyl-Trna Synthetase From Me | 1e-48 | |
| 2i4l_A | 458 | Rhodopseudomonas Palustris Prolyl-Trna Synthetase L | 3e-48 | |
| 1nj8_A | 459 | Crystal Structure Of Prolyl-Trna Synthetase From Me | 3e-46 | |
| 3a32_A | 471 | Crystal Structure Of Putative Threonyl-Trna Synthet | 9e-45 | |