HHsearch alignment for GI: 254781004 and conserved domain: CHL00201

>CHL00201 syh histidine-tRNA synthetase; Provisional.
Probab=99.95  E-value=8.9e-25  Score=190.79  Aligned_cols=362  Identities=19%  Similarity=0.239  Sum_probs=226.6

Q ss_pred             CCCEEEEECCHHHHHHHHHHHHHHHH-HCCCEEEECCCCCCCCCCCCCCCC--CCCCCCCCEEECCCCCCCCCCEEEECC
Q ss_conf             87435650107899999999999887-689638555432443100011210--012555420100145677782377434
Q gi|254781004|r  262 GSGVIFWHRKGWKIFQTLISYMRRKI-KDDYEEINTPQVLDQHLWQQSGHW--DSYRANMFAVKCADDTIKDLRTFALKP  338 (652)
Q Consensus       262 ~~G~~~wlP~G~~i~~~ie~~ir~~~-~~G~~eV~tP~l~~~~Lw~~SGh~--~~y~~~mf~~~~~~~~~~~~~~~~LkP  338 (652)
T Consensus         7 ~kG~rD~lp~e~~~~~~i~~~i~~~f~~~Gf~~I~TP~lE~~e~~~~~~g~~~d~i~k~~y~f~-----D~~g~~l~LRp   81 (424)
T CHL00201          7 LRGTKDILPDEIEYWQFIHEKAATLLKLANYQEIRTPIFENTELFDRGIGEETDIVNKEMYRFF-----DRGNRSITLRP   81 (424)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHCCCCCCCCHHHHHHHEEEE-----CCCCCEEEECC
T ss_conf             9999878999999999999999999998599250475404198862357874205666532545-----59998888678


Q ss_pred             CCHHHHHHHHHHCCCCHHHCCHHHHHHEEEECCCCCCCCEEEEECCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             31257777652012222310432000100012787645200010563533442101053767887899999988766552
Q gi|254781004|r  339 MNCPGHVAVFNHGLKSYRELPVRLAEFGSVYRNEPSGSLHGLMRVRGFTQDDAHVFCTKEQMFNECLKIHNLIISIYKDF  418 (652)
Q Consensus       339 mncp~h~~i~~~~~~SYrdLPlrl~e~~~~~R~E~sg~l~GL~R~ReF~~~Dah~F~~~eq~~~e~~~~~~~~~~v~~~~  418 (652)
T Consensus        82 D~T~piaR~~~~~~~~~~~~P~r~~y~g~vfR~e~pq--~G--R~REF~Q~gvEiiG~~~~~--aDaEvi~l~~~~l~~l  155 (424)
T CHL00201         82 EGTASIVRAFIENRMAYHMRPQRLWYSGPMFRYERPQ--SG--RQRQFHQLGIEFIGSSDPR--ADMEVIHLAMTLFNEL  155 (424)
T ss_pred             CCHHHHHHHHHHCCCCCCCCCEEEEEECCEEECCCCC--CC--CCCHHHHCCEEEECCCCHH--HHHHHHHHHHHHHHHC
T ss_conf             7709999999974765579987899875478058987--88--6421041462000689828--7899999999999865


Q ss_pred             CCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHH----HHCCCCCCCCCCC----CC---CCCCCC--CCCCCCCCH-H
Q ss_conf             13321000146531125860357789999999998----5021212566752----05---555554--554321100-2
Q gi|254781004|r  419 GFEKIMVKLSTRPEKRVGSDALWDDAENIMKGVLD----TIKNSSQDRINTG----VL---LGEGAF--YGPKFEYIL-K  484 (652)
Q Consensus       419 g~~~~~~~ls~~~~~~~g~~~~~~~ae~~l~~~l~----~~~~~~~~~~~~~----~~---~g~~af--ygpkid~~~-~  484 (652)
T Consensus       156 gl~~~~i~in~~g-----~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~l~~~~~~  230 (424)
T CHL00201        156 PVHRLVLDINSIG-----KMEDRALYRDKLTEYLSQYNQDLDEDSQNRLSSNPLRILDSKNGATQEILDMAPLLSDFLSL  230 (424)
T ss_pred             CCCCEEHHCCCCC-----CHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCHHHHHHHHCHHHHHHHCH
T ss_conf             9652010003325-----59988889999999999987543778775321148999873060479998644320102048


Q ss_pred             HHC-------CCCCC-CCCCCHHHHCCCCC--------CC---------------EE---EEECCCEEEEEEEEECCCHH
Q ss_conf             110-------33100-12110111022346--------74---------------16---73179721379964034103
Q gi|254781004|r  485 DAI-------GRDWQ-CGTIQVDFNLPSRF--------NA---------------FY---VNSHSEKCHPVMIHRAVFGS  530 (652)
Q Consensus       485 d~~-------gr~~~-~~tiq~df~~p~~f--------~l---------------~y---~~~dg~~~~pvmihr~~~Gs  530 (652)
T Consensus       231 ~~~~~l~~l~~~l~~~~v~~~~D~slvRGLdYYTG~VFE~~~~~~~~~~si~gGGRYD~Lv~~fgg~~~Pav---GfaiG  307 (424)
T CHL00201        231 ESEEHFADVCEYLANLNIPYKINPKLVRGLDYYNDTAFEIKTLGSDAQDTVCGGGRYDSLVEQLGGPKTPAV---GWAIG  307 (424)
T ss_pred             HHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHCCCCCCCEE---EEEEC
T ss_conf             889999999999984387645287771576764573699996788862342378770778997299999857---78843


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHCCCCEEEEEC
Q ss_conf             78999999997387088733780899985796689999999999998798899975896636766655434898899987
Q gi|254781004|r  531 IERFIGIMIENFKGNLPLWLSPIQAIVTTITSSAVEYAQEIANLLKSHHLSIETDFRNETINYKIREHSIKKIPIIIICG  610 (652)
Q Consensus       531 ~eR~ia~liE~~~g~~P~wLAP~QV~Iipi~e~~~eya~~i~~~L~~~girV~~Ddr~~~~G~Kir~a~l~giP~~ivIG  610 (652)
T Consensus       308 ieRl~~~l-~~-~~~~~--~~~~~~~v~~~~~~~~~~~~~ia~~LR~~gi~~e~~~~~~~l~kql~~A~k~~~~~~iiiG  383 (424)
T CHL00201        308 IERLLLIA-KD-NILLP--KPSIDFYIATKGNVAIKIAFSIQRFLHNQGLKSELDLSSSNFSKQIKQAAKKRALACIILG  383 (424)
T ss_pred             HHHHHHHH-HH-CCCCC--CCCCCEEEEECCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHCCCCEEEEEC
T ss_conf             99999999-73-37777--7788589997784999999999999998899399970899999999999987999999985


Q ss_pred             HHHHHCCCEEEEECCCCCEE---EECHHHHHHHHHHHCC
Q ss_conf             42532581899988988663---3429999999987314
Q gi|254781004|r  611 DKEASERSIGIRRFGSTTTQ---KVSLLDAIPILTKESL  646 (652)
Q Consensus       611 ~ke~e~~~Vtir~R~~~~~~---~i~lee~i~~l~~e~~  646 (652)
T Consensus       384 ~~E~~~~~v~lK~l~sg~Q~~~~~~~l~~~i~~lkk~~~  422 (424)
T CHL00201        384 DNEIARGAITIKWLDSQIQENSQYLNFKDFISYLKKKIL  422 (424)
T ss_pred             CHHHHCCEEEEEECCCCCCCCEECCCHHHHHHHHHHHHH
T ss_conf             158868968998689988752302479999999999872