HHsearch alignment for GI: 254781004 and conserved domain: CHL00201
>CHL00201 syh histidine-tRNA synthetase; Provisional.
Probab=99.95 E-value=8.9e-25 Score=190.79 Aligned_cols=362 Identities=19% Similarity=0.239 Sum_probs=226.6
Q ss_pred CCCEEEEECCHHHHHHHHHHHHHHHH-HCCCEEEECCCCCCCCCCCCCCCC--CCCCCCCCEEECCCCCCCCCCEEEECC
Q ss_conf 87435650107899999999999887-689638555432443100011210--012555420100145677782377434
Q gi|254781004|r 262 GSGVIFWHRKGWKIFQTLISYMRRKI-KDDYEEINTPQVLDQHLWQQSGHW--DSYRANMFAVKCADDTIKDLRTFALKP 338 (652)
Q Consensus 262 ~~G~~~wlP~G~~i~~~ie~~ir~~~-~~G~~eV~tP~l~~~~Lw~~SGh~--~~y~~~mf~~~~~~~~~~~~~~~~LkP 338 (652)
T Consensus 7 ~kG~rD~lp~e~~~~~~i~~~i~~~f~~~Gf~~I~TP~lE~~e~~~~~~g~~~d~i~k~~y~f~-----D~~g~~l~LRp 81 (424)
T CHL00201 7 LRGTKDILPDEIEYWQFIHEKAATLLKLANYQEIRTPIFENTELFDRGIGEETDIVNKEMYRFF-----DRGNRSITLRP 81 (424)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHCCCCCCCCHHHHHHHEEEE-----CCCCCEEEECC
T ss_conf 9999878999999999999999999998599250475404198862357874205666532545-----59998888678
Q ss_pred CCHHHHHHHHHHCCCCHHHCCHHHHHHEEEECCCCCCCCEEEEECCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 31257777652012222310432000100012787645200010563533442101053767887899999988766552
Q gi|254781004|r 339 MNCPGHVAVFNHGLKSYRELPVRLAEFGSVYRNEPSGSLHGLMRVRGFTQDDAHVFCTKEQMFNECLKIHNLIISIYKDF 418 (652)
Q Consensus 339 mncp~h~~i~~~~~~SYrdLPlrl~e~~~~~R~E~sg~l~GL~R~ReF~~~Dah~F~~~eq~~~e~~~~~~~~~~v~~~~ 418 (652)
T Consensus 82 D~T~piaR~~~~~~~~~~~~P~r~~y~g~vfR~e~pq--~G--R~REF~Q~gvEiiG~~~~~--aDaEvi~l~~~~l~~l 155 (424)
T CHL00201 82 EGTASIVRAFIENRMAYHMRPQRLWYSGPMFRYERPQ--SG--RQRQFHQLGIEFIGSSDPR--ADMEVIHLAMTLFNEL 155 (424)
T ss_pred CCHHHHHHHHHHCCCCCCCCCEEEEEECCEEECCCCC--CC--CCCHHHHCCEEEECCCCHH--HHHHHHHHHHHHHHHC
T ss_conf 7709999999974765579987899875478058987--88--6421041462000689828--7899999999999865
Q ss_pred CCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHH----HHCCCCCCCCCCC----CC---CCCCCC--CCCCCCCCH-H
Q ss_conf 13321000146531125860357789999999998----5021212566752----05---555554--554321100-2
Q gi|254781004|r 419 GFEKIMVKLSTRPEKRVGSDALWDDAENIMKGVLD----TIKNSSQDRINTG----VL---LGEGAF--YGPKFEYIL-K 484 (652)
Q Consensus 419 g~~~~~~~ls~~~~~~~g~~~~~~~ae~~l~~~l~----~~~~~~~~~~~~~----~~---~g~~af--ygpkid~~~-~ 484 (652)
T Consensus 156 gl~~~~i~in~~g-----~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~l~~~~~~ 230 (424)
T CHL00201 156 PVHRLVLDINSIG-----KMEDRALYRDKLTEYLSQYNQDLDEDSQNRLSSNPLRILDSKNGATQEILDMAPLLSDFLSL 230 (424)
T ss_pred CCCCEEHHCCCCC-----CHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCHHHHHHHHCHHHHHHHCH
T ss_conf 9652010003325-----59988889999999999987543778775321148999873060479998644320102048
Q ss_pred HHC-------CCCCC-CCCCCHHHHCCCCC--------CC---------------EE---EEECCCEEEEEEEEECCCHH
Q ss_conf 110-------33100-12110111022346--------74---------------16---73179721379964034103
Q gi|254781004|r 485 DAI-------GRDWQ-CGTIQVDFNLPSRF--------NA---------------FY---VNSHSEKCHPVMIHRAVFGS 530 (652)
Q Consensus 485 d~~-------gr~~~-~~tiq~df~~p~~f--------~l---------------~y---~~~dg~~~~pvmihr~~~Gs 530 (652)
T Consensus 231 ~~~~~l~~l~~~l~~~~v~~~~D~slvRGLdYYTG~VFE~~~~~~~~~~si~gGGRYD~Lv~~fgg~~~Pav---GfaiG 307 (424)
T CHL00201 231 ESEEHFADVCEYLANLNIPYKINPKLVRGLDYYNDTAFEIKTLGSDAQDTVCGGGRYDSLVEQLGGPKTPAV---GWAIG 307 (424)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHCCCCCCCEE---EEEEC
T ss_conf 889999999999984387645287771576764573699996788862342378770778997299999857---78843
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHCCCCEEEEEC
Q ss_conf 78999999997387088733780899985796689999999999998798899975896636766655434898899987
Q gi|254781004|r 531 IERFIGIMIENFKGNLPLWLSPIQAIVTTITSSAVEYAQEIANLLKSHHLSIETDFRNETINYKIREHSIKKIPIIIICG 610 (652)
Q Consensus 531 ~eR~ia~liE~~~g~~P~wLAP~QV~Iipi~e~~~eya~~i~~~L~~~girV~~Ddr~~~~G~Kir~a~l~giP~~ivIG 610 (652)
T Consensus 308 ieRl~~~l-~~-~~~~~--~~~~~~~v~~~~~~~~~~~~~ia~~LR~~gi~~e~~~~~~~l~kql~~A~k~~~~~~iiiG 383 (424)
T CHL00201 308 IERLLLIA-KD-NILLP--KPSIDFYIATKGNVAIKIAFSIQRFLHNQGLKSELDLSSSNFSKQIKQAAKKRALACIILG 383 (424)
T ss_pred HHHHHHHH-HH-CCCCC--CCCCCEEEEECCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHCCCCEEEEEC
T ss_conf 99999999-73-37777--7788589997784999999999999998899399970899999999999987999999985
Q ss_pred HHHHHCCCEEEEECCCCCEE---EECHHHHHHHHHHHCC
Q ss_conf 42532581899988988663---3429999999987314
Q gi|254781004|r 611 DKEASERSIGIRRFGSTTTQ---KVSLLDAIPILTKESL 646 (652)
Q Consensus 611 ~ke~e~~~Vtir~R~~~~~~---~i~lee~i~~l~~e~~ 646 (652)
T Consensus 384 ~~E~~~~~v~lK~l~sg~Q~~~~~~~l~~~i~~lkk~~~ 422 (424)
T CHL00201 384 DNEIARGAITIKWLDSQIQENSQYLNFKDFISYLKKKIL 422 (424)
T ss_pred CHHHHCCEEEEEECCCCCCCCEECCCHHHHHHHHHHHHH
T ss_conf 158868968998689988752302479999999999872