HHsearch alignment for GI: 254781004 and conserved domain: COG0172
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis].
Probab=99.85 E-value=2.2e-20 Score=160.48 Aligned_cols=284 Identities=20% Similarity=0.351 Sum_probs=212.4
Q ss_pred CCCCCEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECC----CCCCEEEEECCHHHHHHHHHHHHHH-
Q ss_conf 75642068999998379889999999999753200887541144044226----7874356501078999999999998-
Q gi|254781004|r 211 DSNRPMLSRIYGTAWNTQQELTQYLYFLEESEKRDHRKLAREMDLFHIAE----DGSGVIFWHRKGWKIFQTLISYMRR- 285 (652)
Q Consensus 211 d~~~~~l~Riyg~af~~~~~l~~~~~~~eea~~rdHr~lg~~~~lf~~~~----~~~G~~~wlP~G~~i~~~ie~~ir~- 285 (652)
T Consensus 118 de~~n~~vr~~g~~~~~----------~~~f~pk~H~~lge~l~~~Df~~aaKvsGsrf~~~~~~~a~L~rAL~~f~ld~ 187 (429)
T COG0172 118 DEDDNVEVRRWGEPPVF----------VFDFEPKDHVELGEKLGLLDFERAAKVSGSRFYFYKGKGARLERALIQFMLDL 187 (429)
T ss_pred CCCCCEEEEEEECCCCC----------CCCCCCCHHHHHHHHCCCCHHHHHCCCCCCCEEEECCHHHHHHHHHHHHHHHH
T ss_conf 86565488997337654----------44678530998765427624566502078743898077899999999999999
Q ss_pred HHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCEEEECCCCHHHHHHHHHHCCCCHHHCCHHHHHH
Q ss_conf 87689638555432443100011210012555420100145677782377434312577776520122223104320001
Q gi|254781004|r 286 KIKDDYEEINTPQVLDQHLWQQSGHWDSYRANMFAVKCADDTIKDLRTFALKPMNCPGHVAVFNHGLKSYRELPVRLAEF 365 (652)
Q Consensus 286 ~~~~G~~eV~tP~l~~~~Lw~~SGh~~~y~~~mf~~~~~~~~~~~~~~~~LkPmncp~h~~i~~~~~~SYrdLPlrl~e~ 365 (652)
T Consensus 188 ~~~~Gf~e~~~P~lv~~e~m~gtgqlpkf~e~~y~v~~--------~~~~LipTaEvpl~~l~~~Eil~~~~LP~k~~~~ 259 (429)
T COG0172 188 HTKHGFTEVLPPYLVNLESMFGTGQLPKFEEDLYKVED--------PDLYLIPTAEVPLTNLHRDEILDEEDLPIKYTAY 259 (429)
T ss_pred HHHCCCEEEECCEEECHHHHHCCCCCCCCCCCCEEECC--------CCEEEEECCHHHHHHHHCCCCCCCCCCCEEEEEE
T ss_conf 98769658657606059886223789888012158458--------9879970202156786516201521278026787
Q ss_pred EEEECCCCCC---CCEEEEECCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCHHHHH
Q ss_conf 0001278764---5200010563533442101053767887899999988766552133210001465311258603577
Q gi|254781004|r 366 GSVYRNEPSG---SLHGLMRVRGFTQDDAHVFCTKEQMFNECLKIHNLIISIYKDFGFEKIMVKLSTRPEKRVGSDALWD 442 (652)
Q Consensus 366 ~~~~R~E~sg---~l~GL~R~ReF~~~Dah~F~~~eq~~~e~~~~~~~~~~v~~~~g~~~~~~~ls~~~~~~~g~~~~~~ 442 (652)
T Consensus 260 S~cFR~EAGs~GrdtrGliRvHQF~KVE~v~~~~Pe~S~~~~E~m~~~ae~il~~LeLPyRvv~lctGDlgf~a~kk--- 336 (429)
T COG0172 260 SPCFRSEAGSAGKDTRGLIRVHQFDKVELVVITKPEESEEELEEMLGNAEEVLQELELPYRVVNLCTGDLGFSAAKK--- 336 (429)
T ss_pred CHHHHCCCCCCCCCCCCEEEEEEEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCC---
T ss_conf 72542145656643553014664355899997070116999999999999999970898368432567768864673---
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCHHHHCCCCCCCEEEE-ECCCEEEEE
Q ss_conf 8999999999850212125667520555555455432110021103310012110111022346741673-179721379
Q gi|254781004|r 443 DAENIMKGVLDTIKNSSQDRINTGVLLGEGAFYGPKFEYILKDAIGRDWQCGTIQVDFNLPSRFNAFYVN-SHSEKCHPV 521 (652)
Q Consensus 443 ~ae~~l~~~l~~~~~~~~~~~~~~~~~g~~afygpkid~~~~d~~gr~~~~~tiq~df~~p~~f~l~y~~-~dg~~~~pv 521 (652)
T Consensus 337 ------------------YDlE-vWlP~q~~y-------------rEisScSn-c~DfQ-aRR~~~Ryr~~~~~k~~~v- 381 (429)
T COG0172 337 ------------------YDLE-VWLPGQNKY-------------REISSCSN-CTDFQ-ARRLNIRYRDKEEGKREFV- 381 (429)
T ss_pred ------------------EEEE-EEECCCCCC-------------EEEEEEEC-CCCHH-HHHHHCCCCCCCCCCCEEE-
T ss_conf ------------------2379-985377874-------------02124434-54288-8987540563657996699-
Q ss_pred EEEECCCHH---HHHHHHHHHHHHC---C--CCCCCCCCE
Q ss_conf 964034103---7899999999738---7--088733780
Q gi|254781004|r 522 MIHRAVFGS---IERFIGIMIENFK---G--NLPLWLSPI 553 (652)
Q Consensus 522 mihr~~~Gs---~eR~ia~liE~~~---g--~~P~wLAP~ 553 (652)
T Consensus 382 --h-TLNGsglA~~R~l~AilENyq~~dG~v~IPevL~~y 418 (429)
T COG0172 382 --H-TLNGSGLAVGRTLVAILENYQQEDGSVKIPEVLRPY 418 (429)
T ss_pred --E-ECCCHHHHHHHHHHHHHHCCCCCCCCEECCHHHHHH
T ss_conf --9-546427799999999997153789986344788732