HHsearch alignment for GI: 254781004 and conserved domain: COG0441
>COG0441 ThrS Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis].
Probab=100.00 E-value=0 Score=1289.10 Aligned_cols=583 Identities=51% Similarity=0.935 Sum_probs=560.6
Q ss_pred CEEEEEECCEEEECCEEECCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCCCH
Q ss_conf 28999989889977453036707986289999999999989999999999977998899724358855788408888889
Q gi|254781004|r 37 KAVAVAINGKVCDLSDPVREGSIEIITPEDPRSLAVIRHSCAHIMAEAVQSIWPEVQVAIGPIIEDGFYYDFDKEQPFSS 116 (652)
Q Consensus 37 ~~vaa~vng~l~dL~~~l~d~~i~~i~~~~~eg~~i~~hS~ahlL~~Av~~l~p~~kl~igp~i~~GfYyD~~~~~~it~ 116 (652)
T Consensus 1 ~~~~~~~~~-~~~~~~-------~~~~~~~~~~~~~~rhs~ah~l~~av~~l~p~--~~~gp~ie~gfyyd~~~~~~~~~ 70 (589)
T COG0441 1 KALAIHVDG-ELDLKD-------EIITAEDEEGLEIIRHSCAHVLAQAVKRLYPD--VTIGPVIEEGFYYDFDVKEPITP 70 (589)
T ss_pred CEEEEECCC-CEECCC-------CCCCCCCCCCHHHEEHHHHHHHHHHHHHHCCC--CCCCCCCCCEEEEEECCCCCCCH
T ss_conf 905897266-142220-------42576674213430066889999999975888--65467613405884025888898
Q ss_pred HHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCCCHHHHHHHHHCCCCCCCEEECCCCCEEECCCCCCCHHHHHHH
Q ss_conf 89999999999999669980485327678544544167113556654203455421302575201000235521444222
Q gi|254781004|r 117 DELAQIEKKMQEIIARDSPFLKQYLSHEKARELFESKKEAYKVEILESIPAKENVTLYRQGEWFDLCRGPHVRSTGQVKK 196 (652)
Q Consensus 117 ~dl~~Ie~~M~~ii~~~~pi~r~~vs~~eA~~~F~~~~~~~K~~li~~~~~~~~v~~y~~g~~~Dlc~GphvpsTg~ik~ 196 (652)
T Consensus 71 ~dl~~ie~~m~~i~~~~~~~~~~~~~~e~a~~~f~----~yK~~~i~~~~--~~~s~y~~~~~~dlc~gph~~~t~~i-~ 143 (589)
T COG0441 71 EDLLKIEKEMKEIAKENLPIEREVVSREEARAPFG----PYKAELIDCKG--HPLSEYSQGEFVDLCRGPHVPSTGKI-A 143 (589)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHH----HHHHHHHHCCC--CCCCEEECCCCCCCCCCCCCCCCCEE-E
T ss_conf 89999999999999835772899804999987766----65799986279--87506735760003678888765337-8
Q ss_pred HHHHHHHHHHCCCCCCCCCEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECC-CCCCEEEEECCHHHH
Q ss_conf 3333332111015775642068999998379889999999999753200887541144044226-787435650107899
Q gi|254781004|r 197 FFKLMKVAGAYWRGDSNRPMLSRIYGTAWNTQQELTQYLYFLEESEKRDHRKLAREMDLFHIAE-DGSGVIFWHRKGWKI 275 (652)
Q Consensus 197 ~fkL~~~sgayw~gd~~~~~l~Riyg~af~~~~~l~~~~~~~eea~~rdHr~lg~~~~lf~~~~-~~~G~~~wlP~G~~i 275 (652)
T Consensus 144 -fkl~~~~~ayw~gd~~~~~l~riygta~~~~~~l~~~l~~~eea~krdHrklg~el~LF~~~~~~~~G~~~~~pkG~~i 222 (589)
T COG0441 144 -FKLLKLAGAYWRGDENNEMLQRIYGTAFADKKELEAYLKRLEEAKKRDHRKLGKELDLFSFSPEEGPGLPFWHPKGATI 222 (589)
T ss_pred -EEEEEECCHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCEEECCCCCCCCEEECCCCCCH
T ss_conf -8988812453336877721067733355788999999766665027864768776214341444588506987884669
Q ss_pred HHHHHHHHHHHH-HCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCEEEECCCCHHHHHHHHHHCCCC
Q ss_conf 999999999887-6896385554324431000112100125554201001456777823774343125777765201222
Q gi|254781004|r 276 FQTLISYMRRKI-KDDYEEINTPQVLDQHLWQQSGHWDSYRANMFAVKCADDTIKDLRTFALKPMNCPGHVAVFNHGLKS 354 (652)
Q Consensus 276 ~~~ie~~ir~~~-~~G~~eV~tP~l~~~~Lw~~SGh~~~y~~~mf~~~~~~~~~~~~~~~~LkPmncp~h~~i~~~~~~S 354 (652)
T Consensus 223 r~~le~y~~~~~~~~Gy~~V~TP~~~~~~l~~~SGH~~~y~e~mf~~~~~------~~~~~lKpmNCpgh~~ifk~~~~S 296 (589)
T COG0441 223 RNLLEDYVRTKLRSYGYQEVKTPVLADLELWELSGHWDNYKEDMFLTESD------DREYALKPMNCPGHILIFKSGLRS 296 (589)
T ss_pred HHHHHHHHHHHHHHCCCEEECCCEEEECCCCHHCCCHHHCCCCCEEECCC------CHHHEEEECCCHHHHHHHHCCCCC
T ss_conf 99999999989875585271287363000010112045513660662137------723306410787689998537861
Q ss_pred HHHCCHHHHHHEEEECCCCCCCCEEEEECCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCC
Q ss_conf 23104320001000127876452000105635334421010537678878999999887665521332100014653112
Q gi|254781004|r 355 YRELPVRLAEFGSVYRNEPSGSLHGLMRVRGFTQDDAHVFCTKEQMFNECLKIHNLIISIYKDFGFEKIMVKLSTRPEKR 434 (652)
Q Consensus 355 YrdLPlrl~e~~~~~R~E~sg~l~GL~R~ReF~~~Dah~F~~~eq~~~e~~~~~~~~~~v~~~~g~~~~~~~ls~~~~~~ 434 (652)
T Consensus 297 YR~LP~r~~E~g~v~R~E~SGal~GL~RvR~ftqdD~Hifc~~dQi~~E~~~~~~~i~~v~~~fg~~~y~~~ls~r~-k~ 375 (589)
T COG0441 297 YRELPLRLAEFGYVYRYEKSGALHGLMRVRGFTQDDAHIFCTPDQIKDEFKGILELILEVYKDFGFTDYEVKLSTRP-KF 375 (589)
T ss_pred EECCCHHHHHCCEEECCCCCCHHHCCCCCCCEEECCCCEECCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCC-CC
T ss_conf 10044043314422115676422224001132245620140467889999999999999998469753799996477-64
Q ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCHHHHCCCCCCCEEEEEC
Q ss_conf 58603577899999999985021212566752055555545543211002110331001211011102234674167317
Q gi|254781004|r 435 VGSDALWDDAENIMKGVLDTIKNSSQDRINTGVLLGEGAFYGPKFEYILKDAIGRDWQCGTIQVDFNLPSRFNAFYVNSH 514 (652)
Q Consensus 435 ~g~~~~~~~ae~~l~~~l~~~~~~~~~~~~~~~~~g~~afygpkid~~~~d~~gr~~~~~tiq~df~~p~~f~l~y~~~d 514 (652)
T Consensus 376 ig~d~~W~~a~~~l~~al~~~~------~~~~~~~G~gaFyGPKid~~v~Dalgr~~q~~TIQlDf~lpeRF~l~Yv~~d 449 (589)
T COG0441 376 IGSDEMWDKAEAALREALKEIG------VEYVEEPGEGAFYGPKIDFQVKDALGREWQLGTIQLDFNLPERFDLEYVDED 449 (589)
T ss_pred CCCHHHHHHHHHHHHHHHHHHC------CEEEECCCCEEEECCCCCEEEEECCCCCEECCEEEEECCCHHHCEEEEECCC
T ss_conf 6873556778899998887608------6036468735797766424887356861005617870377242147998577
Q ss_pred CCEEEEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHH
Q ss_conf 97213799640341037899999999738708873378089998579668999999999999879889997589663676
Q gi|254781004|r 515 SEKCHPVMIHRAVFGSIERFIGIMIENFKGNLPLWLSPIQAIVTTITSSAVEYAQEIANLLKSHHLSIETDFRNETINYK 594 (652)
Q Consensus 515 g~~~~pvmihr~~~Gs~eR~ia~liE~~~g~~P~wLAP~QV~Iipi~e~~~eya~~i~~~L~~~girV~~Ddr~~~~G~K 594 (652)
T Consensus 450 ~~~~~PvmiHrai~GSiERfi~iLiE~~~G~~P~WLaPvQv~VipV~~~~~~ya~~v~~~L~~~giRvdvD~~~e~l~kK 529 (589)
T COG0441 450 GEKKRPVIIHRAILGSIERFIGILLEHYAGALPTWLAPVQVRVIPVADEHLDYAKEVAEKLRKAGIRVDIDDRNEKLGKK 529 (589)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHH
T ss_conf 87538789992464148999999998646988765785179999937377789999999999729702412566606899
Q ss_pred HHHHHHCCCCEEEEECHHHHHCCCEEEEECCCCCEEEECHHHHHHHHHHHCCCHHH
Q ss_conf 66554348988999874253258189998898866334299999999873143562
Q gi|254781004|r 595 IREHSIKKIPIIIICGDKEASERSIGIRRFGSTTTQKVSLLDAIPILTKESLPPDC 650 (652)
Q Consensus 595 ir~a~l~giP~~ivIG~ke~e~~~Vtir~R~~~~~~~i~lee~i~~l~~e~~~~d~ 650 (652)
T Consensus 530 IR~a~~~kipyiiVvG~kE~e~~~v~vR~r~~~~~~~~~l~e~i~~ik~e~~~~~~ 585 (589)
T COG0441 530 IREAGTQKIPYVIVVGDKEVETGTVVVRRRGGKQQKSMTLEELVEELKKEIEGRPN 585 (589)
T ss_pred HHHHHHCCCCEEEEECHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 99877628787999731432038717997267755634699999999987644557