HHsearch alignment for GI: 254781004 and conserved domain: COG0442
>COG0442 ProS Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis].
Probab=100.00 E-value=0 Score=519.92 Aligned_cols=376 Identities=18% Similarity=0.289 Sum_probs=299.5
Q ss_pred EECCCCCCEEEEECCHHHHHHHHHHHHHHHHHC-CCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCEEE
Q ss_conf 422678743565010789999999999988768-9638555432443100011210012555420100145677782377
Q gi|254781004|r 257 HIAEDGSGVIFWHRKGWKIFQTLISYMRRKIKD-DYEEINTPQVLDQHLWQQSGHWDSYRANMFAVKCADDTIKDLRTFA 335 (652)
Q Consensus 257 ~~~~~~~G~~~wlP~G~~i~~~ie~~ir~~~~~-G~~eV~tP~l~~~~Lw~~SGh~~~y~~~mf~~~~~~~~~~~~~~~~ 335 (652)
T Consensus 31 ~i~~~~~G~y~~lP~g~rv~~kI~~iir~em~~~G~~Evl~P~L~p~eLwkEs~r~~~f~~El~~v-----~drg~~~l~ 105 (500)
T COG0442 31 MIRKPVKGLYVWLPLGLRVLEKIENIIREEMDKIGAQEVLFPTLIPAELWKESGRWEGFGPELFRV-----KDRGDRPLA 105 (500)
T ss_pred CEEECCCCEEEECCCHHHHHHHHHHHHHHHHHHCCCEEEECHHCCHHHHHHHHCHHHCCCHHHEEE-----ECCCCCEEE
T ss_conf 602025716997765899999999999999986085088311058789998748563036444899-----716996343
Q ss_pred ECCCCHHHHHHHHHHCCCCHHHCCHHHHHHEEEECCCCCCCCEEEEECCCCCCCCCEEECC-HHHHHHHHHHHHHHHHHH
Q ss_conf 4343125777765201222231043200010001278764520001056353344210105-376788789999998876
Q gi|254781004|r 336 LKPMNCPGHVAVFNHGLKSYRELPVRLAEFGSVYRNEPSGSLHGLMRVRGFTQDDAHVFCT-KEQMFNECLKIHNLIISI 414 (652)
Q Consensus 336 LkPmncp~h~~i~~~~~~SYrdLPlrl~e~~~~~R~E~sg~l~GL~R~ReF~~~Dah~F~~-~eq~~~e~~~~~~~~~~v 414 (652)
T Consensus 106 L~PTsEe~it~~~~~~i~SYkdLPl~lYQi~~kfRdE~rp-r~gllR~REF~mkdaySfh~~~e~a~~~y~~~~~~Y~~i 184 (500)
T COG0442 106 LRPTSEEVITDMFRKWIRSYKDLPLKLYQIQSKFRDEKRP-RFGLLRGREFLMKDAYSFHADEEDAEETYEKMLDAYSRI 184 (500)
T ss_pred ECCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCC-CCCCCCHHEEEECCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 5788689999999998655651881210134588433468-877300020330111210289899999999999999999
Q ss_pred HHHHCCCCCEECCCCCCCCCCCCHHHHHHH-HH-------------HHHHHH-HHHCCCCC-CCCCCCC-----------
Q ss_conf 655213321000146531125860357789-99-------------999999-85021212-5667520-----------
Q gi|254781004|r 415 YKDFGFEKIMVKLSTRPEKRVGSDALWDDA-EN-------------IMKGVL-DTIKNSSQ-DRINTGV----------- 467 (652)
Q Consensus 415 ~~~~g~~~~~~~ls~~~~~~~g~~~~~~~a-e~-------------~l~~~l-~~~~~~~~-~~~~~~~----------- 467 (652)
T Consensus 185 f~~i~l~~~~~~ad~g~~Gg~~S~eF~~l~pd~ge~qi~ts~~y~aN~e~a~~~~~~~~~~~~~~~~v~t~s~~~s~r~~ 264 (500)
T COG0442 185 FLRLPLIFGPVPADEGFIGGSYSHEFEALMPDGGEDQIATSHHYGANFEKAFIDIKFEDEEEGELEYVHTTSYGISTRII 264 (500)
T ss_pred HHHCCCEEEEECCCCCCCCCCCCEEEEEECCCCCCCEEEEECCHHHHHHHHCCCCCCCCCCCCCCEEECCCCEEEEEEEE
T ss_conf 98589538862566778887653699998568985479980626666877446777556665541475146268874001
Q ss_pred -----CCCC-CCCCCCCC---------------------------CCC-----------HH----HHCCC-------CCC
Q ss_conf -----5555-55455432---------------------------110-----------02----11033-------100
Q gi|254781004|r 468 -----LLGE-GAFYGPKF---------------------------EYI-----------LK----DAIGR-------DWQ 492 (652)
Q Consensus 468 -----~~g~-~afygpki---------------------------d~~-----------~~----d~~gr-------~~~ 492 (652)
T Consensus 265 ~~~i~i~GDn~G~v~Pp~vA~~qV~~~~~~~~ga~~h~~~~~~~rd~~~~l~~~~~~~~~D~~~~~~~G~kl~~~e~ieV 344 (500)
T COG0442 265 GAAILIHGDNEGLVLPPIVADIQVVIVPIFIKGANEHYKVVNYGRDVAEPLEKLGIRVEGDDRSPDGPGFKLNIWEGIEV 344 (500)
T ss_pred EEEEEEECCCCCCCCCCHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCCCCEEEEEECCCC
T ss_conf 58999714887764875004534899751336741013343045444566543025884245689999721102102445
Q ss_pred CCCCCHHHHCCCCCCCEEEEECCCEEEEEEEEECCCHH-HHHHHHHHHHHH----CCCCCCCCCCEEEEEEECCH---HH
Q ss_conf 12110111022346741673179721379964034103-789999999973----87088733780899985796---68
Q gi|254781004|r 493 CGTIQVDFNLPSRFNAFYVNSHSEKCHPVMIHRAVFGS-IERFIGIMIENF----KGNLPLWLSPIQAIVTTITS---SA 564 (652)
Q Consensus 493 ~~tiq~df~~p~~f~l~y~~~dg~~~~pvmihr~~~Gs-~eR~ia~liE~~----~g~~P~wLAP~QV~Iipi~e---~~ 564 (652)
T Consensus 345 ghif~lG~kyse~~~a~v~~r~g~~~~~~m---g~ygigvsr~v~a~ieq~~d~~gi~w~~a~apf~~~iv~~n~~~~~~ 421 (500)
T COG0442 345 GHIFELGTKYSEAMNATVLDRDGKEQPKTM---GCYGIGVSRLVAALLEQIHDENGIIWPKAIAPFDVHIVPVNTKDFKQ 421 (500)
T ss_pred CEEEEECCHHHHHCEEEEEECCCCCCCEEE---ECHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCHHHHH
T ss_conf 779998741254180499924887144178---70000034599999997362226716001475000799748635999
Q ss_pred HHHHHHHHHHHHHCC-CEEEEECCCCCCCHHHHHHHHCCCCEEEEECHHHHHCCCEEEEECCCCCEEEECHHHHHHHHH
Q ss_conf 999999999999879-889997589663676665543489889998742532581899988988663342999999998
Q gi|254781004|r 565 VEYAQEIANLLKSHH-LSIETDFRNETINYKIREHSIKKIPIIIICGDKEASERSIGIRRFGSTTTQKVSLLDAIPILT 642 (652)
Q Consensus 565 ~eya~~i~~~L~~~g-irV~~Ddr~~~~G~Kir~a~l~giP~~ivIG~ke~e~~~Vtir~R~~~~~~~i~lee~i~~l~ 642 (652)
T Consensus 422 ~~~~~~~~~~l~~~G~~e~~~ddr~er~g~k~~~a~liGiP~~~~~g~~-~~~g~~e~k~r~~ge~~~~~~~~l~~~~~ 499 (500)
T COG0442 422 AEAAEKLYVELPWCGTVEVLLDDRDERPGVKFADADLIGIPLRIVVGKR-LAEGEVEVKCRKCGEKEAVTIEALFARLY 499 (500)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCEEECCCCEEEECCC-CCCCCEEEEECCCCCHHHCCHHHHHHHHH
T ss_conf 9875658998775786214454220146750148747104403310334-46882368864778610154998888860