HHsearch alignment for GI: 254781004 and conserved domain: COG0442
>COG0442 ProS Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis].
Probab=99.60 E-value=4.2e-15 Score=124.03 Aligned_cols=240 Identities=20% Similarity=0.205 Sum_probs=165.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCC----------------CCCHHHHHHHHHHHHHHHHHHCCC-CCC
Q ss_conf 678878999999887665521332100014653112----------------586035778999999999850212-125
Q gi|254781004|r 399 QMFNECLKIHNLIISIYKDFGFEKIMVKLSTRPEKR----------------VGSDALWDDAENIMKGVLDTIKNS-SQD 461 (652)
Q Consensus 399 q~~~e~~~~~~~~~~v~~~~g~~~~~~~ls~~~~~~----------------~g~~~~~~~ae~~l~~~l~~~~~~-~~~ 461 (652)
T Consensus 109 TsEe~it~~~~~~i~SYkdLPl~lYQi~~kfRdE~rpr~gllR~REF~mkdaySfh~~~e~a~~~y~~~~~~Y~~if~~i 188 (500)
T COG0442 109 TSEEVITDMFRKWIRSYKDLPLKLYQIQSKFRDEKRPRFGLLRGREFLMKDAYSFHADEEDAEETYEKMLDAYSRIFLRL 188 (500)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCCHHEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 86899999999986556518812101345884334688773000203301112102898999999999999999999858
Q ss_pred CCCCCCCCCCCCCCCCCC--CCCHHHHCCCCCCCCCCC-HHHHCCCCC-CCEEEEEC-CCEEEEEEEEECCCHHHHHHHH
Q ss_conf 667520555555455432--110021103310012110-111022346-74167317-9721379964034103789999
Q gi|254781004|r 462 RINTGVLLGEGAFYGPKF--EYILKDAIGRDWQCGTIQ-VDFNLPSRF-NAFYVNSH-SEKCHPVMIHRAVFGSIERFIG 536 (652)
Q Consensus 462 ~~~~~~~~g~~afygpki--d~~~~d~~gr~~~~~tiq-~df~~p~~f-~l~y~~~d-g~~~~pvmihr~~~Gs~eR~ia 536 (652)
T Consensus 189 ~l~~~~~~ad~g~~Gg~~S~eF~~l~pd~ge~qi~ts~~y~aN~e~a~~~~~~~~~~~~~~~---~v~t~s~~~s~r~~~ 265 (500)
T COG0442 189 PLIFGPVPADEGFIGGSYSHEFEALMPDGGEDQIATSHHYGANFEKAFIDIKFEDEEEGELE---YVHTTSYGISTRIIG 265 (500)
T ss_pred CCEEEEECCCCCCCCCCCCEEEEEECCCCCCCEEEEECCHHHHHHHHCCCCCCCCCCCCCCE---EECCCCEEEEEEEEE
T ss_conf 95388625667788876536999985689854799806266668774467775566655414---751462688740015
Q ss_pred HHHHHHC----CCCCCCCCCEEEEEEECC-------HHHHHHHHHHHHHHHHCCCEEEEECC-CCCCCHHHHHHHHCCCC
Q ss_conf 9999738----708873378089998579-------66899999999999987988999758-96636766655434898
Q gi|254781004|r 537 IMIENFK----GNLPLWLSPIQAIVTTIT-------SSAVEYAQEIANLLKSHHLSIETDFR-NETINYKIREHSIKKIP 604 (652)
Q Consensus 537 ~liE~~~----g~~P~wLAP~QV~Iipi~-------e~~~eya~~i~~~L~~~girV~~Ddr-~~~~G~Kir~a~l~giP 604 (652)
T Consensus 266 ~~i~i~GDn~G~v~Pp~vA~~qV~~~~~~~~ga~~h~~~~~~~rd~~~~l~~~~~~~~~D~~~~~~~G~kl~~~e~ieVg 345 (500)
T COG0442 266 AAILIHGDNEGLVLPPIVADIQVVIVPIFIKGANEHYKVVNYGRDVAEPLEKLGIRVEGDDRSPDGPGFKLNIWEGIEVG 345 (500)
T ss_pred EEEEEECCCCCCCCCCHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCCCCEEEEEECCCCC
T ss_conf 89997148877648750045348997513367410133430454445665430258842456899997211021024457
Q ss_pred EEEEECHHHHHCCCEEEEECCCCC--EEEECHHHHHHHH
Q ss_conf 899987425325818999889886--6334299999999
Q gi|254781004|r 605 IIIICGDKEASERSIGIRRFGSTT--TQKVSLLDAIPIL 641 (652)
Q Consensus 605 ~~ivIG~ke~e~~~Vtir~R~~~~--~~~i~lee~i~~l 641 (652)
T Consensus 346 hif~lG~kyse~~~a~v~~r~g~~~~~~mg~ygigvsr~ 384 (500)
T COG0442 346 HIFELGTKYSEAMNATVLDRDGKEQPKTMGCYGIGVSRL 384 (500)
T ss_pred EEEEECCHHHHHCEEEEEECCCCCCCEEEECHHHHHHHH
T ss_conf 799987412541804999248871441787000003459