HHsearch alignment for GI: 254781004 and conserved domain: COG0442

>COG0442 ProS Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis].
Probab=99.60  E-value=4.2e-15  Score=124.03  Aligned_cols=240  Identities=20%  Similarity=0.205  Sum_probs=165.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCC----------------CCCHHHHHHHHHHHHHHHHHHCCC-CCC
Q ss_conf             678878999999887665521332100014653112----------------586035778999999999850212-125
Q gi|254781004|r  399 QMFNECLKIHNLIISIYKDFGFEKIMVKLSTRPEKR----------------VGSDALWDDAENIMKGVLDTIKNS-SQD  461 (652)
Q Consensus       399 q~~~e~~~~~~~~~~v~~~~g~~~~~~~ls~~~~~~----------------~g~~~~~~~ae~~l~~~l~~~~~~-~~~  461 (652)
T Consensus       109 TsEe~it~~~~~~i~SYkdLPl~lYQi~~kfRdE~rpr~gllR~REF~mkdaySfh~~~e~a~~~y~~~~~~Y~~if~~i  188 (500)
T COG0442         109 TSEEVITDMFRKWIRSYKDLPLKLYQIQSKFRDEKRPRFGLLRGREFLMKDAYSFHADEEDAEETYEKMLDAYSRIFLRL  188 (500)
T ss_pred             CCHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCCHHEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             86899999999986556518812101345884334688773000203301112102898999999999999999999858


Q ss_pred             CCCCCCCCCCCCCCCCCC--CCCHHHHCCCCCCCCCCC-HHHHCCCCC-CCEEEEEC-CCEEEEEEEEECCCHHHHHHHH
Q ss_conf             667520555555455432--110021103310012110-111022346-74167317-9721379964034103789999
Q gi|254781004|r  462 RINTGVLLGEGAFYGPKF--EYILKDAIGRDWQCGTIQ-VDFNLPSRF-NAFYVNSH-SEKCHPVMIHRAVFGSIERFIG  536 (652)
Q Consensus       462 ~~~~~~~~g~~afygpki--d~~~~d~~gr~~~~~tiq-~df~~p~~f-~l~y~~~d-g~~~~pvmihr~~~Gs~eR~ia  536 (652)
T Consensus       189 ~l~~~~~~ad~g~~Gg~~S~eF~~l~pd~ge~qi~ts~~y~aN~e~a~~~~~~~~~~~~~~~---~v~t~s~~~s~r~~~  265 (500)
T COG0442         189 PLIFGPVPADEGFIGGSYSHEFEALMPDGGEDQIATSHHYGANFEKAFIDIKFEDEEEGELE---YVHTTSYGISTRIIG  265 (500)
T ss_pred             CCEEEEECCCCCCCCCCCCEEEEEECCCCCCCEEEEECCHHHHHHHHCCCCCCCCCCCCCCE---EECCCCEEEEEEEEE
T ss_conf             95388625667788876536999985689854799806266668774467775566655414---751462688740015


Q ss_pred             HHHHHHC----CCCCCCCCCEEEEEEECC-------HHHHHHHHHHHHHHHHCCCEEEEECC-CCCCCHHHHHHHHCCCC
Q ss_conf             9999738----708873378089998579-------66899999999999987988999758-96636766655434898
Q gi|254781004|r  537 IMIENFK----GNLPLWLSPIQAIVTTIT-------SSAVEYAQEIANLLKSHHLSIETDFR-NETINYKIREHSIKKIP  604 (652)
Q Consensus       537 ~liE~~~----g~~P~wLAP~QV~Iipi~-------e~~~eya~~i~~~L~~~girV~~Ddr-~~~~G~Kir~a~l~giP  604 (652)
T Consensus       266 ~~i~i~GDn~G~v~Pp~vA~~qV~~~~~~~~ga~~h~~~~~~~rd~~~~l~~~~~~~~~D~~~~~~~G~kl~~~e~ieVg  345 (500)
T COG0442         266 AAILIHGDNEGLVLPPIVADIQVVIVPIFIKGANEHYKVVNYGRDVAEPLEKLGIRVEGDDRSPDGPGFKLNIWEGIEVG  345 (500)
T ss_pred             EEEEEECCCCCCCCCCHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCCCCEEEEEECCCCC
T ss_conf             89997148877648750045348997513367410133430454445665430258842456899997211021024457


Q ss_pred             EEEEECHHHHHCCCEEEEECCCCC--EEEECHHHHHHHH
Q ss_conf             899987425325818999889886--6334299999999
Q gi|254781004|r  605 IIIICGDKEASERSIGIRRFGSTT--TQKVSLLDAIPIL  641 (652)
Q Consensus       605 ~~ivIG~ke~e~~~Vtir~R~~~~--~~~i~lee~i~~l  641 (652)
T Consensus       346 hif~lG~kyse~~~a~v~~r~g~~~~~~mg~ygigvsr~  384 (500)
T COG0442         346 HIFELGTKYSEAMNATVLDRDGKEQPKTMGCYGIGVSRL  384 (500)
T ss_pred             EEEEECCHHHHHCEEEEEECCCCCCCEEEECHHHHHHHH
T ss_conf             799987412541804999248871441787000003459