HHsearch alignment for GI: 254781004 and conserved domain: COG1190
>COG1190 LysU Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis].
Probab=96.84 E-value=0.0085 Score=39.15 Aligned_cols=131 Identities=19% Similarity=0.232 Sum_probs=75.1
Q ss_pred HHHCCEEEECCCCCCEEEEECCHHHHHHHHHHHHHHHHH-CCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCC
Q ss_conf 411440442267874356501078999999999998876-8963855543244310001121001255542010014567
Q gi|254781004|r 250 AREMDLFHIAEDGSGVIFWHRKGWKIFQTLISYMRRKIK-DDYEEINTPQVLDQHLWQQSGHWDSYRANMFAVKCADDTI 328 (652)
Q Consensus 250 g~~~~lf~~~~~~~G~~~wlP~G~~i~~~ie~~ir~~~~-~G~~eV~tP~l~~~~Lw~~SGh~~~y~~~mf~~~~~~~~~ 328 (652)
T Consensus 165 ~RylDLi~N~e~--------r~~f~~Rs~ii~~iR~fl~~~gFlEVETP~lq~i~-----GGA~A-rP--F~T--hhN-- 224 (502)
T COG1190 165 QRYLDLIVNPES--------RQTFIKRSKIIRAIREFLDDRGFLEVETPMLQPIP-----GGAAA-RP--FIT--HHN-- 224 (502)
T ss_pred HHHHHHHCCHHH--------HHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCC-----CCCCC-CC--CEE--EEC--
T ss_conf 888898659999--------99999999999999999987797584160003557-----87322-65--012--202--
Q ss_pred CCCCEEEECCCCHHHHHHHHHHCCCCHHHCCHHHHHHEEEECCCCCCCCEEEEECCCCCCCCCEEECCHHHHHHHHHHHH
Q ss_conf 77823774343125777765201222231043200010001278764520001056353344210105376788789999
Q gi|254781004|r 329 KDLRTFALKPMNCPGHVAVFNHGLKSYRELPVRLAEFGSVYRNEPSGSLHGLMRVRGFTQDDAHVFCTKEQMFNECLKIH 408 (652)
Q Consensus 329 ~~~~~~~LkPmncp~h~~i~~~~~~SYrdLPlrl~e~~~~~R~E~sg~l~GL~R~ReF~~~Dah~F~~~eq~~~e~~~~~ 408 (652)
T Consensus 225 ald~dlyLRIApE----LyLKRliVG--G~-erVfEIgr~FRNEGid~t----HNPEFTmlE~Y------~AYaDy~D~m 287 (502)
T COG1190 225 ALDMDLYLRIAPE----LYLKRLIVG--GF-ERVFEIGRNFRNEGIDTT----HNPEFTMLEFY------QAYADYEDLM 287 (502)
T ss_pred CCCCCEEEEECCH----HHHHHHHHC--CC-HHHEEECCCCCCCCCCCC----CCCCHHHHHHH------HHHHHHHHHH
T ss_conf 3677568762418----999988753--72-142230552003787666----48423568999------9985799999
Q ss_pred HHHHHHHHH
Q ss_conf 998876655
Q gi|254781004|r 409 NLIISIYKD 417 (652)
Q Consensus 409 ~~~~~v~~~ 417 (652)
T Consensus 288 ~ltE~Li~~ 296 (502)
T COG1190 288 DLTEELIKE 296 (502)
T ss_pred HHHHHHHHH
T ss_conf 999999999