HHsearch alignment for GI: 254781004 and conserved domain: COG2269

>COG2269 Truncated, possibly inactive, lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis].
Probab=97.69  E-value=0.00033  Score=48.83  Aligned_cols=133  Identities=20%  Similarity=0.262  Sum_probs=88.8

Q ss_pred             CCEEEEECCH----HHHHHHHHHHHHHHH-HCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCEEEEC
Q ss_conf             7435650107----899999999999887-68963855543244310001121001255542010014567778237743
Q gi|254781004|r  263 SGVIFWHRKG----WKIFQTLISYMRRKI-KDDYEEINTPQVLDQHLWQQSGHWDSYRANMFAVKCADDTIKDLRTFALK  337 (652)
Q Consensus       263 ~G~~~wlP~G----~~i~~~ie~~ir~~~-~~G~~eV~tP~l~~~~Lw~~SGh~~~y~~~mf~~~~~~~~~~~~~~~~Lk  337 (652)
T Consensus         2 ~~~~~W~p~~~~~~ll~Ra~i~~~iR~FF~erg~lEVeTp~Ls~a~vt--d~hL~~F~Te~~~-----~~~~~~~~l~L~   74 (322)
T COG2269           2 SETPWWQPSASIDNLLKRAAIIAAIRRFFAERGVLEVETPALSVAPVT--DIHLHPFETEFLG-----PGGAKGKPLWLH   74 (322)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEECCHHHHCCCCC--CCCEEEEEEEEEC-----CCCCCCCEEEEE
T ss_conf             988768888888999989999999999998769258533676507898--6423445667654-----676665303665


Q ss_pred             CCCHHHHHHHHHHCCCCHHHCCHHHHHHEEEECCCCCCCCEEEEECCCCCCCCCE-EECCHHHHHHHHHHHHHHHHH
Q ss_conf             4312577776520122223104320001000127876452000105635334421-010537678878999999887
Q gi|254781004|r  338 PMNCPGHVAVFNHGLKSYRELPVRLAEFGSVYRNEPSGSLHGLMRVRGFTQDDAH-VFCTKEQMFNECLKIHNLIIS  413 (652)
Q Consensus       338 Pmncp~h~~i~~~~~~SYrdLPlrl~e~~~~~R~E~sg~l~GL~R~ReF~~~Dah-~F~~~eq~~~e~~~~~~~~~~  413 (652)
T Consensus        75 TSPEy~mKrLLAag~~-------~ifql~kvfRN~E~G~~H----~PEFTMLEWYrv~~d~~~lm~e~~~Ll~~vl~  140 (322)
T COG2269          75 TSPEYHMKRLLAAGSG-------PIFQLGKVFRNEEMGRLH----NPEFTMLEWYRVGCDYYRLMNEVDDLLQLVLE  140 (322)
T ss_pred             CCCHHHHHHHHHCCCC-------CCHHHHHHHHCCCCCCCC----CCCEEEEEEECCCCCHHHHHHHHHHHHHHHHH
T ss_conf             6807778999975488-------601454777263325667----98436765100678599999999999999970