HHsearch alignment for GI: 254781004 and conserved domain: PRK00960
>PRK00960 seryl-tRNA synthetase; Provisional.
Probab=99.28 E-value=2.4e-11 Score=98.11 Aligned_cols=249 Identities=19% Similarity=0.236 Sum_probs=161.7
Q ss_pred CCCCEEEEECCHHHHHHHHHHHHHHH-HHC-CCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCC--------
Q ss_conf 78743565010789999999999988-768-96385554324431000112100125554201001456777--------
Q gi|254781004|r 261 DGSGVIFWHRKGWKIFQTLISYMRRK-IKD-DYEEINTPQVLDQHLWQQSGHWDSYRANMFAVKCADDTIKD-------- 330 (652)
Q Consensus 261 ~~~G~~~wlP~G~~i~~~ie~~ir~~-~~~-G~~eV~tP~l~~~~Lw~~SGh~~~y~~~mf~~~~~~~~~~~-------- 330 (652)
T Consensus 210 ~gRGQW~y~P~~t~LFRafE~ii~Ee~i~~lGf~e~lFPKLiplevm~kmryleGlp~gmYYVCpP--K-RDPe~feef~ 286 (516)
T PRK00960 210 PGRGQWFYTPPMAKLFRAFEEIILEECIEKLGFDECLFPKLIPLDVMYKMRYLEGLPEGMYYVCPP--K-RDPEMFEEFV 286 (516)
T ss_pred CCCCCEEECCHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCHHHHHHHHCCCCCCCCCCEEECCC--C-CCHHHHHHHH
T ss_conf 888742437758899999999999997432376100013455299997733012699872786699--8-9868999997
Q ss_pred -------------------CCEEEECCCCHHHHHHHHHHCCCCHHHCCHHHHH-HEEEECCCCCCCCEEEEECCCCCCCC
Q ss_conf -------------------8237743431257777652012222310432000-10001278764520001056353344
Q gi|254781004|r 331 -------------------LRTFALKPMNCPGHVAVFNHGLKSYRELPVRLAE-FGSVYRNEPSGSLHGLMRVRGFTQDD 390 (652)
Q Consensus 331 -------------------~~~~~LkPmncp~h~~i~~~~~~SYrdLPlrl~e-~~~~~R~E~sg~l~GL~R~ReF~~~D 390 (652)
T Consensus 287 ~e~~i~~EiPi~~lKe~l~~P~yvlapAQCePFy~fl~~e~v~~d~lPik~FDrSGwtyRwE~GG-~~GleRV~EF~RiE 365 (516)
T PRK00960 287 NEMMIKKEIPIDLLKEKLRDPGYVLAPAQCEPFYQFLDHELVDVDELPIKFFDKSGWTYRWEGGG-AKGLDRVNEFLRIE 365 (516)
T ss_pred HHHEEECCCCHHHHHHHHCCCCCEEEECCCCCHHHHHCCCCCCCCCCCEEEEECCCCEEEECCCC-CCCHHHHHHHHEEE
T ss_conf 77334053668999986128861351024993788736772565558657885588626404787-43235550101477
Q ss_pred CEEECCHHHHHHHHHHH-HHHHHHHHHHHCCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 21010537678878999-99988766552133210001465311258603577899999999985021212566752055
Q gi|254781004|r 391 AHVFCTKEQMFNECLKI-HNLIISIYKDFGFEKIMVKLSTRPEKRVGSDALWDDAENIMKGVLDTIKNSSQDRINTGVLL 469 (652)
Q Consensus 391 ah~F~~~eq~~~e~~~~-~~~~~~v~~~~g~~~~~~~ls~~~~~~~g~~~~~~~ae~~l~~~l~~~~~~~~~~~~~~~~~ 469 (652)
T Consensus 366 ~VW~gtpe-~ve~~r~~~~~y~~~~ae~LdLE-~w~ev~ddP---------fylegr~~e----~r------~iE~p--- 421 (516)
T PRK00960 366 CVWMGTPE-FVEEVRDDTLKYAHILAEKLDLE-YWTEVGDDP---------FYLEGRKLE----DR------GIEFP--- 421 (516)
T ss_pred EEEECCHH-HHHHHHHHHHHHHHHHHHHHCHH-HHEEECCCC---------HHHCCCCCC----CC------CCCCC---
T ss_conf 78846889-99999888999999988774324-422305675---------032256544----55------64368---
Q ss_pred CCCCCCCCCCCCCHHHHC---CCCCCCC--CCCHHHHCCCCCCCEEEEECCCEEEEEEEEECCCH-HHHHHHHHHHHHHC
Q ss_conf 555545543211002110---3310012--11011102234674167317972137996403410-37899999999738
Q gi|254781004|r 470 GEGAFYGPKFEYILKDAI---GRDWQCG--TIQVDFNLPSRFNAFYVNSHSEKCHPVMIHRAVFG-SIERFIGIMIENFK 543 (652)
Q Consensus 470 g~~afygpkid~~~~d~~---gr~~~~~--tiq~df~~p~~f~l~y~~~dg~~~~pvmihr~~~G-s~eR~ia~liE~~~ 543 (652)
T Consensus 422 -----~vp~ye~~~~LP~~~~e~k~v~v~s~nVhG~hf~eGF~VK~--~~g~~-----~WtGCtG~GL~RWv~gFLAQ~G 489 (516)
T PRK00960 422 -----DVPKYEMRLWLPHIKEERKGVAVTSANIHGTHFVEGFNVKD--YKGRK-----LWTGCTGVGLTRWVIGFLAQKG 489 (516)
T ss_pred -----CCCCEEEEEECCCCCCCCCEEEEEEEEECCCCCCCCCCCEE--CCCCE-----EECCCCCCCHHHHHHHHHHHCC
T ss_conf -----88854679965764776772688886314753567652200--35873-----1137764457899999998707
Q ss_pred C---CCCCC
Q ss_conf 7---08873
Q gi|254781004|r 544 G---NLPLW 549 (652)
Q Consensus 544 g---~~P~w 549 (652)
T Consensus 490 fd~~~WPe~ 498 (516)
T PRK00960 490 FDPDNWPEE 498 (516)
T ss_pred CCCCCCCHH
T ss_conf 981216499