HHsearch alignment for GI: 254781004 and conserved domain: PRK02983

>PRK02983 lysS lysyl-tRNA synthetase; Provisional.
Probab=98.08  E-value=2e-05  Score=57.26  Aligned_cols=115  Identities=17%  Similarity=0.159  Sum_probs=68.2

Q ss_pred             HHHHHHHHHHHHHHH-HCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCEEEECCCCHHHHHHHHHHC
Q ss_conf             899999999999887-6896385554324431000112100125554201001456777823774343125777765201
Q gi|254781004|r  273 WKIFQTLISYMRRKI-KDDYEEINTPQVLDQHLWQQSGHWDSYRANMFAVKCADDTIKDLRTFALKPMNCPGHVAVFNHG  351 (652)
Q Consensus       273 ~~i~~~ie~~ir~~~-~~G~~eV~tP~l~~~~Lw~~SGh~~~y~~~mf~~~~~~~~~~~~~~~~LkPmncp~h~~i~~~~  351 (652)
T Consensus       776 ~~~RS~Vi~aiR~~L~~~GFlEVETPiLq~~-----~GG-----A~ARPFlThsn--a~d~~~YLriA-----PELflKR  838 (1099)
T PRK02983        776 IRARSAVLRAVRETLVAKGFLEVETPILQQI-----HGG-----ANARPFLTHIN--AYDLDLYLRIA-----PELYLKR  838 (1099)
T ss_pred             HHHHHHHHHHHHHHHHHCCCEEEECCCCCCC-----CCC-----CCCCCCCCCCC--CCCCCCEEECC-----HHHHHHH
T ss_conf             9999999999999998789889557546778-----887-----56785301033--67866145148-----0899999


Q ss_pred             CCCHHHCCHHHHHHEEEECCCCCCCCEEEEECCCCCCCCCE-EECCHHHHHHHHHHHHHH
Q ss_conf             22223104320001000127876452000105635334421-010537678878999999
Q gi|254781004|r  352 LKSYRELPVRLAEFGSVYRNEPSGSLHGLMRVRGFTQDDAH-VFCTKEQMFNECLKIHNL  410 (652)
Q Consensus       352 ~~SYrdLPlrl~e~~~~~R~E~sg~l~GL~R~ReF~~~Dah-~F~~~eq~~~e~~~~~~~  410 (652)
T Consensus       839 LmVG-Gf-eRVFEI~RcFRNEglra----dHnPEFTmLE~Y~Ay~Dyedmm~ltEeLi~~  892 (1099)
T PRK02983        839 LCVG-GV-ERVFELGRAFRNEGVDF----SHNPEFTLLEAYQAHADYLVMRDLCRELIQN  892 (1099)
T ss_pred             HHHC-CC-CCCEEECCCCCCCCCCC----CCCCCHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf             9864-86-31134325446799998----7494079999999847899999999999999