HHsearch alignment for GI: 254781004 and conserved domain: PRK08661
>PRK08661 prolyl-tRNA synthetase; Provisional.
Probab=100.00 E-value=0 Score=547.08 Aligned_cols=337 Identities=22% Similarity=0.325 Sum_probs=290.9
Q ss_pred CCCEEEEECCHHHHHHHHHHHHHHHHHC-CCEEEECCCCCC-CCCCCCCCCCCCCCCCCCEEECCCCCCCCCCEEEECCC
Q ss_conf 8743565010789999999999988768-963855543244-31000112100125554201001456777823774343
Q gi|254781004|r 262 GSGVIFWHRKGWKIFQTLISYMRRKIKD-DYEEINTPQVLD-QHLWQQSGHWDSYRANMFAVKCADDTIKDLRTFALKPM 339 (652)
Q Consensus 262 ~~G~~~wlP~G~~i~~~ie~~ir~~~~~-G~~eV~tP~l~~-~~Lw~~SGh~~~y~~~mf~~~~~~~~~~~~~~~~LkPm 339 (652)
T Consensus 34 VkG~~v~~P~g~~iw~~i~~~~~~~~~~~g~~~~~fP~liP~~~l~kE~~hvegF~pE~~~VT~-~G~~~l~~~l~lrPT 112 (478)
T PRK08661 34 VKGCMVIRPYGYAIWENIQKILDEMFKETGHENVYFPLLIPESLLQKEAEHIEGFAPEVAWVTH-GGGEKLEEPLALRPT 112 (478)
T ss_pred CCEEEEECCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHCCCCCEEEEEEC-CCCCCCCCCCCCCCC
T ss_conf 8727997874899999999999999986398087302406689998666566156740489954-787555676310888
Q ss_pred CHHHHHHHHHHCCCCHHHCCHHHHHHEEEECCCCCCCCEEEEECCCCCCCCCEEECC-HHHHHHHHHHHHHHHHHHHH-H
Q ss_conf 125777765201222231043200010001278764520001056353344210105-37678878999999887665-5
Q gi|254781004|r 340 NCPGHVAVFNHGLKSYRELPVRLAEFGSVYRNEPSGSLHGLMRVRGFTQDDAHVFCT-KEQMFNECLKIHNLIISIYK-D 417 (652)
Q Consensus 340 ncp~h~~i~~~~~~SYrdLPlrl~e~~~~~R~E~sg~l~GL~R~ReF~~~Dah~F~~-~eq~~~e~~~~~~~~~~v~~-~ 417 (652)
T Consensus 113 sEt~i~~~~~~wI~SyrdLPl~l~Qw~~v~R~E~r~-r~-flR~rEFl~qe~ht~h~t~eea~~~~~~~~~~Y~~~~e~~ 190 (478)
T PRK08661 113 SETIIYPMFKKWIQSYRDLPLLYNQWVNVVRWEKKT-RP-FLRTREFLWQEGHTAHATEEEAEEETLEMLEIYKEFAEDY 190 (478)
T ss_pred CHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCC-CC-HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 799999999998523652690002004458657889-63-1434263542120113999999999999999999999983
Q ss_pred HCCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCC-
Q ss_conf 2133210001465311258603577899999999985021212566752055555545543211002110331001211-
Q gi|254781004|r 418 FGFEKIMVKLSTRPEKRVGSDALWDDAENIMKGVLDTIKNSSQDRINTGVLLGEGAFYGPKFEYILKDAIGRDWQCGTI- 496 (652)
Q Consensus 418 ~g~~~~~~~ls~~~~~~~g~~~~~~~ae~~l~~~l~~~~~~~~~~~~~~~~~g~~afygpkid~~~~d~~gr~~~~~ti- 496 (652)
T Consensus 191 LaiPvi~g-~k~~~ekFaGa~~------------------------------------T~~iea~m~d--GkaLQ~gtsH 231 (478)
T PRK08661 191 LAIPVIIG-KKTEWEKFAGADY------------------------------------TYTIEAMMPD--GKALQIGTSH 231 (478)
T ss_pred CCCCEECC-CCCCCCCCCCCCC------------------------------------CCEEEEECCC--CCEEECCCEE
T ss_conf 78755637-7783021789865------------------------------------4205887268--8631143142
Q ss_pred CHHHHCCCCCCCEEEEECCCEEEEEEEEECCCHHHHHHHHHHHHHHC----CCCCCCCCCEEEEEEECC-----HHHHHH
Q ss_conf 01110223467416731797213799640341037899999999738----708873378089998579-----668999
Q gi|254781004|r 497 QVDFNLPSRFNAFYVNSHSEKCHPVMIHRAVFGSIERFIGIMIENFK----GNLPLWLSPIQAIVTTIT-----SSAVEY 567 (652)
Q Consensus 497 q~df~~p~~f~l~y~~~dg~~~~pvmihr~~~Gs~eR~ia~liE~~~----g~~P~wLAP~QV~Iipi~-----e~~~ey 567 (652)
T Consensus 232 ~LGq~fskaf~i~f~d~~g~~~~~~~---ts~GistR~iga~Im~H~Dd~GlvlPp~iAP~qVvIvPi~~~~~~~~v~~~ 308 (478)
T PRK08661 232 YLGQNFAKAFDIKFQDKDGKLEYVHQ---TSWGVSTRLIGALIMVHGDDKGLVLPPKIAPIQVVIIPILKKKEEEEVLEY 308 (478)
T ss_pred CCCHHHHHHCCCEEECCCCCEEEEEE---ECCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCEEEEEECCCCCHHHHHHH
T ss_conf 16223567549699889998867887---534542789999999847998651784559830899984578878999999
Q ss_pred HHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHCCCCEEEEECHHHHHCCCEEEEECCCCCEEEECHHHHHHHHHH
Q ss_conf 9999999998798899975896636766655434898899987425325818999889886633429999999987
Q gi|254781004|r 568 AQEIANLLKSHHLSIETDFRNETINYKIREHSIKKIPIIIICGDKEASERSIGIRRFGSTTTQKVSLLDAIPILTK 643 (652)
Q Consensus 568 a~~i~~~L~~~girV~~Ddr~~~~G~Kir~a~l~giP~~ivIG~ke~e~~~Vtir~R~~~~~~~i~lee~i~~l~~ 643 (652)
T Consensus 309 ~~~i~~~L~~~girv~~Ddrd~~pG~Kf~~~elkGvPlRieiGprDle~~~v~v~RRDt~eK~~v~~~~l~~~v~~ 384 (478)
T PRK08661 309 AKELAEELKAAGIRVKLDDRDKTPGWKFYEWELKGVPLRIEIGPRDLENNTVVLVRRDTLEKETVSLDELVEEVPE 384 (478)
T ss_pred HHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCHHCCCEEEEEECCCCCCEEECHHHHHHHHHH
T ss_conf 9999999987790799817665665666661014785899977201028979999867986146659999999999