HHsearch alignment for GI: 254781004 and conserved domain: PRK09194
>PRK09194 prolyl-tRNA synthetase; Provisional.
Probab=100.00 E-value=0 Score=652.53 Aligned_cols=392 Identities=19% Similarity=0.279 Sum_probs=324.2
Q ss_pred HHHHHHHHHHHHHCCEEEECCCCCCEEEEECCHHHHHHHHHHHHHHHHHC-CCEEEECCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 75320088754114404422678743565010789999999999988768-96385554324431000112100125554
Q gi|254781004|r 240 ESEKRDHRKLAREMDLFHIAEDGSGVIFWHRKGWKIFQTLISYMRRKIKD-DYEEINTPQVLDQHLWQQSGHWDSYRANM 318 (652)
Q Consensus 240 ea~~rdHr~lg~~~~lf~~~~~~~G~~~wlP~G~~i~~~ie~~ir~~~~~-G~~eV~tP~l~~~~Lw~~SGh~~~y~~~m 318 (652)
T Consensus 17 dae~~Sh~Ll~r---aG~Ir~~~sGiy~~LPlg~rvl~Kie~IIr~em~~iGa~Ev~mp~l~p~elW~~sgR~~~~g~el 93 (570)
T PRK09194 17 DAEVISHQLMLR---AGYIRKLASGIYTYLPLGLRVLRKIENIVREEMNKIGAQEVLMPALQPAELWQESGRWEKYGPEL 93 (570)
T ss_pred CCCHHHHHHHHH---CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHCCCHHHCCHHH
T ss_conf 324566999987---06734143772554243699999999999999986498798535679778987618821236134
Q ss_pred CEEECCCCCCCCCCEEEECCCCHHHHHHHHHHCCCCHHHCCHHHHHHEEEECCCCCCCCEEEEECCCCCCCCCEEECC-H
Q ss_conf 201001456777823774343125777765201222231043200010001278764520001056353344210105-3
Q gi|254781004|r 319 FAVKCADDTIKDLRTFALKPMNCPGHVAVFNHGLKSYRELPVRLAEFGSVYRNEPSGSLHGLMRVRGFTQDDAHVFCT-K 397 (652)
Q Consensus 319 f~~~~~~~~~~~~~~~~LkPmncp~h~~i~~~~~~SYrdLPlrl~e~~~~~R~E~sg~l~GL~R~ReF~~~Dah~F~~-~ 397 (652)
T Consensus 94 ~r-----~kDR~~~~~~L~PThEE~it~lv~~~i~SYkqLP~~lYQIqtKfRDE~RP-R~GllR~REF~MKDaYSFd~~~ 167 (570)
T PRK09194 94 LR-----LKDRHGRDFVLGPTHEEVITDLVRNEIKSYKQLPLNLYQIQTKFRDEIRP-RFGLMRGREFIMKDAYSFHADE 167 (570)
T ss_pred EE-----EECCCCCEEEECCCCHHHHHHHHHHHHCCHHHCCHHEECCCCEECCCCCC-CCCCHHHHHHHHHCCCCCCCCH
T ss_conf 69-----85278985653787389999999985113764680200132333477887-6762345653451245666998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC-------------
Q ss_conf 7678878999999887665521332100014653112586035778999999999850212125667-------------
Q gi|254781004|r 398 EQMFNECLKIHNLIISIYKDFGFEKIMVKLSTRPEKRVGSDALWDDAENIMKGVLDTIKNSSQDRIN------------- 464 (652)
Q Consensus 398 eq~~~e~~~~~~~~~~v~~~~g~~~~~~~ls~~~~~~~g~~~~~~~ae~~l~~~l~~~~~~~~~~~~------------- 464 (652)
T Consensus 168 e~l~~tY~~~~~AY~~IF~rlgL~~~~v~ADsG~iGG~~ShEF~~~s~~GED~i~~C~~c~yaaN~E~A~~~~~~~~~~~ 247 (570)
T PRK09194 168 ESLDETYDAMYQAYSRIFTRLGLDFRAVEADSGAIGGSASHEFMVLAESGEDTIVYSDESDYAANIEKAEALPPPEPRAA 247 (570)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEEEEECCCCCCEEEEECCCCHHHHHHHHHCCCCCCCCCC
T ss_conf 99999999999999999998098629999146675886652378763789717999689760564877511477666754
Q ss_pred -----------------------------------C-------------------CCC----------------------
Q ss_conf -----------------------------------5-------------------205----------------------
Q gi|254781004|r 465 -----------------------------------T-------------------GVL---------------------- 468 (652)
Q Consensus 465 -----------------------------------~-------------------~~~---------------------- 468 (652)
T Consensus 248 ~~~~~e~v~TP~~~TIe~l~~~~~v~~~~~iKtl~~~~~~~~~~~~v~v~irGD~evNe~Kl~~~~~~~~l~~a~~eei~ 327 (570)
T PRK09194 248 PTEELEKVDTPNAKTIEELAEFLNVPAEKTVKTLLVKADEEGEGELVAVLVRGDHELNEVKLENLLGAAPLELATEEEIR 327 (570)
T ss_pred CCCCCEEECCCCCCHHHHHHHHHCCCHHHHEEEEEEEEECCCCCCEEEEEECCCCCCCHHHHHHCCCCCCCCCCCHHHHH
T ss_conf 30003042599962199999874999888135689984217887358998226520048988740375312248999999
Q ss_pred ---CCCCCCCCC------------------------CCCCCHHH--------------------------------HCCC
Q ss_conf ---555554554------------------------32110021--------------------------------1033
Q gi|254781004|r 469 ---LGEGAFYGP------------------------KFEYILKD--------------------------------AIGR 489 (652)
Q Consensus 469 ---~g~~afygp------------------------kid~~~~d--------------------------------~~gr 489 (652)
T Consensus 328 ~~~g~~~G~iGPv~~~v~ii~D~~v~~~~n~v~GAN~~d~H~~~vn~~RD~~~~~~~Di~~v~~GD~Cp~c~~~L~~~rg 407 (570)
T PRK09194 328 KLFGAPPGFLGPVNLPIPIIADRSVADMSNFVVGANEDDKHYVGVNWGRDFPVPEVADLRNVVEGDPSPDGGGTLKIARG 407 (570)
T ss_pred HHCCCCCCCCCCCCCCCEEEEEHHHHHHCCHHCCCCCCCCEEECCCCCCCCCCCCCCCHHHCCCCCCCCCCCCEEEEEEE
T ss_conf 75189877556667881499703452100010035887645406765656786431125552568889889971277403
Q ss_pred CCCCCCCCHHHHCCCCCCCEEEEECCCEEEEEEEEECCCHH-HHHHHHHHHHHH----CCCCCCCCCCEEEEEEECC---
Q ss_conf 10012110111022346741673179721379964034103-789999999973----8708873378089998579---
Q gi|254781004|r 490 DWQCGTIQVDFNLPSRFNAFYVNSHSEKCHPVMIHRAVFGS-IERFIGIMIENF----KGNLPLWLSPIQAIVTTIT--- 561 (652)
Q Consensus 490 ~~~~~tiq~df~~p~~f~l~y~~~dg~~~~pvmihr~~~Gs-~eR~ia~liE~~----~g~~P~wLAP~QV~Iipi~--- 561 (652)
T Consensus 408 IEVGHiF~LGtkYS~~m~a~~~d~~Gk~~p~~M---GCYGIGVsRllaAiiEq~~De~Gi~WP~~IAPf~V~Ii~~~~~~ 484 (570)
T PRK09194 408 IEVGHIFQLGTKYSEAMNATFLDENGKAQPLTM---GCYGIGVSRLVAAAIEQNHDERGIIWPKAIAPFDVHIVPVNMKD 484 (570)
T ss_pred EEEEEEECCCCCCCHHCCCEEECCCCCCCCCEE---EEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCC
T ss_conf 688876312330146209879998898976145---62002467899999998377775407888688499999679998
Q ss_pred HHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHCCCCEEEEECHHHHHCCCEEEEECCCCCEEEECHHHHHHHH
Q ss_conf 66899999999999987988999758966367666554348988999874253258189998898866334299999999
Q gi|254781004|r 562 SSAVEYAQEIANLLKSHHLSIETDFRNETINYKIREHSIKKIPIIIICGDKEASERSIGIRRFGSTTTQKVSLLDAIPIL 641 (652)
Q Consensus 562 e~~~eya~~i~~~L~~~girV~~Ddr~~~~G~Kir~a~l~giP~~ivIG~ke~e~~~Vtir~R~~~~~~~i~lee~i~~l 641 (652)
T Consensus 485 ~~~~~~ae~iy~~L~~~GidVllDDR~er~G~Kf~DaDLIGiP~~vvvGkk~l~~g~vEvk~R~~~~~~~v~~~el~~~v 564 (570)
T PRK09194 485 EEVRELAEKLYAELLAAGIDVLLDDRKERPGVKFADAELIGIPHRIVVGKRGLAEGIVEYKNRRTGEKEEVKLDELVEFL 564 (570)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCEEEEEEECCCCEEEECHHHHHHHH
T ss_conf 89999999999999978998999899988536667516418997999926740158599999068975886199999999
Q ss_pred HH
Q ss_conf 87
Q gi|254781004|r 642 TK 643 (652)
Q Consensus 642 ~~ 643 (652)
T Consensus 565 ~~ 566 (570)
T PRK09194 565 KE 566 (570)
T ss_pred HH
T ss_conf 99