HHsearch alignment for GI: 254781004 and conserved domain: PRK11092
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional.
Probab=98.13 E-value=6.2e-06 Score=60.80 Aligned_cols=119 Identities=11% Similarity=0.118 Sum_probs=48.7
Q ss_pred CCEEECCCCCCCHHHH-HHHHHHHHHHHH-HCC--------C-CCCCCCEEEEEEEEEECCHHHHHHHHHHHHHHHHHHH
Q ss_conf 5201000235521444-222333333211-101--------5-7756420689999983798899999999997532008
Q gi|254781004|r 178 EWFDLCRGPHVRSTGQ-VKKFFKLMKVAG-AYW--------R-GDSNRPMLSRIYGTAWNTQQELTQYLYFLEESEKRDH 246 (652)
Q Consensus 178 ~~~Dlc~GphvpsTg~-ik~~fkL~~~sg-ayw--------~-gd~~~~~l~Riyg~af~~~~~l~~~~~~~eea~~rdH 246 (652)
T Consensus 181 ELEDlsf~~l~P~~y~~i~~~l~~~~~~r~~~i~~~~~~l~~~L~~~~-i~~~v~gR---~K~~ySI~~Km~-----~k~ 251 (702)
T PRK11092 181 ELEELGFEALYPNRYRVIKEVVKAARGNRKEMIQKILSEIEGRLQEAG-IPCRVSGR---EKHLYSIYCKMV-----LKE 251 (702)
T ss_pred HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CEEEEEEC---CCCHHHHHHHHH-----HCC
T ss_conf 999999987498999999999998766789999999999999999779-91599812---574737889987-----338
Q ss_pred HHHHHHCCEEEECCC-CCCEEEEECCHH--HH----HHHHHHHHHHHHHCCCEEEECCCCCCCCCC
Q ss_conf 875411440442267-874356501078--99----999999999887689638555432443100
Q gi|254781004|r 247 RKLAREMDLFHIAED-GSGVIFWHRKGW--KI----FQTLISYMRRKIKDDYEEINTPQVLDQHLW 305 (652)
Q Consensus 247 r~lg~~~~lf~~~~~-~~G~~~wlP~G~--~i----~~~ie~~ir~~~~~G~~eV~tP~l~~~~Lw 305 (652)
T Consensus 252 ~~f~~i~Dl~a~RIiv~~~~~CY~~LG~iH~~~~pipgrfkDYIa~PK~NgYQSLHTtV~gp~g~~ 317 (702)
T PRK11092 252 QRFHSIMDIYAFRVIVDDSDTCYRVLGQMHSLYKPRPGRVKDYIAIPKANGYQSLHTSMIGPHGVP 317 (702)
T ss_pred CCCCCCCCHHHEEEEECCHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCEEEEEEECCCCCE
T ss_conf 882321240016999688999999999999736879422665412789887301367633599957