HHsearch alignment for GI: 254781004 and conserved domain: TIGR00691
>TIGR00691 spoT_relA RelA/SpoT family protein; InterPro: IPR004811 The functions of Escherichia coli RelA and SpoT differ somewhat. RelA (2.7.6.5 from EC) produces pppGpp (or ppGpp) from ATP and GTP (or GDP). SpoT (3.1.7.2 from EC) degrades ppGpp, but may also act as a secondary ppGpp synthetase. The two proteins are strongly similar. In many species, a single homolog to SpoT and RelA appears responsible for both ppGpp synthesis and ppGpp degradation. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species. ; GO: 0015969 guanosine tetraphosphate metabolic process.
Probab=97.57 E-value=0.00019 Score=50.53 Aligned_cols=72 Identities=25% Similarity=0.430 Sum_probs=61.6
Q ss_pred CCEEEECCCCCEEECCCCCCHHHHHHHHCCCCCCCEEEEEECCEEEE-CCEEECCC-EEEEECCCCHH-HHHHHH
Q ss_conf 87089928998874189888999998636110112899998988997-74530367-07986289999-999999
Q gi|254781004|r 3 SDIKLTFPDGSIKNFPVHATGSDVAESISRSLAKKAVAVAINGKVCD-LSDPVREG-SIEIITPEDPR-SLAVIR 74 (652)
Q Consensus 3 ~~i~I~lpDG~~~~~~~g~t~~dia~~i~~~~~~~~vaa~vng~l~d-L~~~l~d~-~i~~i~~~~~e-g~~i~~ 74 (652)
T Consensus 380 ~~i~VFtP~G~~~~Lp~Gs~~vDfAY~vHtd~G~~~~ga~~ng~~~~Sl~~~L~nG~vVEi~t~k~~~aGP~~~W 454 (741)
T TIGR00691 380 EEIYVFTPKGDVVELPSGSTPVDFAYAVHTDVGHKCTGAKVNGKIVPSLDKELENGDVVEIITGKNSNAGPSVDW 454 (741)
T ss_pred CCCEEECCCEEEEEECCCCCHHHHHHHHCHHHCCEEEEEEECCEEECCCCEEECCCCEEEEEECCCCCCCCCHHH
T ss_conf 542463683008874689956677876330243436746897888034450103786899985788776788798