HHsearch alignment for GI: 254781004 and conserved domain: cd00769
>cd00769 PheRS_beta_core Phenylalanyl-tRNA synthetase (PheRS) beta chain core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer. While the alpha chain contains a catalytic core domain, the beta chain has a non-catalytic core domain.
Probab=92.29 E-value=0.088 Score=32.14 Aligned_cols=91 Identities=18% Similarity=0.203 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHH-CCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCEEEECCCCHHHHHHHHHHCCCC
Q ss_conf 9999999998876-896385554324431000112100125554201001456777823774343125777765201222
Q gi|254781004|r 276 FQTLISYMRRKIK-DDYEEINTPQVLDQHLWQQSGHWDSYRANMFAVKCADDTIKDLRTFALKPMNCPGHVAVFNHGLKS 354 (652)
Q Consensus 276 ~~~ie~~ir~~~~-~G~~eV~tP~l~~~~Lw~~SGh~~~y~~~mf~~~~~~~~~~~~~~~~LkPmncp~h~~i~~~~~~S 354 (652)
T Consensus 2 ~~~l~~~ir~~L~~~Gf~Ev~t~s~~~~~~~~~~~~~---~~~~i~l~N----Pls~e~~~lR~sLlp~LL~~~~~N~~- 73 (198)
T cd00769 2 LQKLERKLRRLLAGLGFQEVITYSLTSPEEAELFDGG---LDEAVELSN----PLSEEYSVLRTSLLPGLLDALARNLN- 73 (198)
T ss_pred HHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHCCC---CCCEEEEEC----CCCHHHHHHHHHHHHHHHHHHHHHCC-
T ss_conf 6799999999999789714130676898999872488---787389708----86566889888779999999986505-
Q ss_pred HHHCCHHHHHHEEEECCCCC
Q ss_conf 23104320001000127876
Q gi|254781004|r 355 YRELPVRLAEFGSVYRNEPS 374 (652)
Q Consensus 355 YrdLPlrl~e~~~~~R~E~s 374 (652)
T Consensus 74 r~~~~~~lFEiG~vy~~~~~ 93 (198)
T cd00769 74 RKNKPLRLFEIGRVFLKDED 93 (198)
T ss_pred CCCCCCEEEEEEEEEECCCC
T ss_conf 67777328997638966888