HHsearch alignment for GI: 254781004 and conserved domain: cd00770
>cd00770 SerRS_core Seryl-tRNA synthetase (SerRS) class II core catalytic domain. SerRS is responsible for the attachment of serine to the 3' OH group of ribose of the appropriate tRNA. This domain It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. SerRS synthetase is a homodimer.
Probab=100.00 E-value=0 Score=348.57 Aligned_cols=269 Identities=19% Similarity=0.332 Sum_probs=223.3
Q ss_pred HHHHHHHHHHHHHCCEEEECC---C-CCCEEEEECCHHHHHHHHHHHHHHHH-HCCCEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 753200887541144044226---7-87435650107899999999999887-689638555432443100011210012
Q gi|254781004|r 240 ESEKRDHRKLAREMDLFHIAE---D-GSGVIFWHRKGWKIFQTLISYMRRKI-KDDYEEINTPQVLDQHLWQQSGHWDSY 314 (652)
Q Consensus 240 ea~~rdHr~lg~~~~lf~~~~---~-~~G~~~wlP~G~~i~~~ie~~ir~~~-~~G~~eV~tP~l~~~~Lw~~SGh~~~y 314 (652)
T Consensus 15 ~f~~rdH~~Lg~~L~L~dfe~~akvsG~rf~~l~g~ga~Le~AL~~f~~d~~~~~Gy~eV~tP~iv~~~~~~~sG~~~~~ 94 (297)
T cd00770 15 DFKPKDHVELGEKLDILDFERGAKVSGSRFYYLKGDGALLERALINFALDFLTKRGFTPVIPPFLVRKEVMEGTGQLPKF 94 (297)
T ss_pred CCCCCCHHHHHHHCCCEECCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHCCCCCC
T ss_conf 99988999999977881023224689877799888899999999999999999879989988530138998543578763
Q ss_pred CCCCCEEECCCCCCCCCCEEEECCCCHHHHHHHHHHCCCCHHHCCHHHHHHEEEECCCCCCC---CEEEEECCCCCCCCC
Q ss_conf 55542010014567778237743431257777652012222310432000100012787645---200010563533442
Q gi|254781004|r 315 RANMFAVKCADDTIKDLRTFALKPMNCPGHVAVFNHGLKSYRELPVRLAEFGSVYRNEPSGS---LHGLMRVRGFTQDDA 391 (652)
Q Consensus 315 ~~~mf~~~~~~~~~~~~~~~~LkPmncp~h~~i~~~~~~SYrdLPlrl~e~~~~~R~E~sg~---l~GL~R~ReF~~~Da 391 (652)
T Consensus 95 ~e~~y~i~--------~~~~~Li~tae~~l~~~~~~~~~~~~dLPlr~~~~s~cfR~Eags~G~d~~GL~RvhqF~kvE~ 166 (297)
T cd00770 95 DEQLYKVE--------GEDLYLIATAEVPLAALHRDEILEEEELPLKYAGYSPCFRKEAGSAGRDTRGLFRVHQFEKVEQ 166 (297)
T ss_pred HHHHHCCC--------CHHHHHHHCCCCCEEEEEEEEECCHHHCCCCEEECCCHHHHCCCCCCCCCCCEEEEEECCEEEE
T ss_conf 56521035--------5055554405666223442003177558865022463413203777755554578872110037
Q ss_pred EEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 10105376788789999998876655213321000146531125860357789999999998502121256675205555
Q gi|254781004|r 392 HVFCTKEQMFNECLKIHNLIISIYKDFGFEKIMVKLSTRPEKRVGSDALWDDAENIMKGVLDTIKNSSQDRINTGVLLGE 471 (652)
Q Consensus 392 h~F~~~eq~~~e~~~~~~~~~~v~~~~g~~~~~~~ls~~~~~~~g~~~~~~~ae~~l~~~l~~~~~~~~~~~~~~~~~g~ 471 (652)
T Consensus 167 ~~~c~pe~s~~~~e~~~~~~e~~l~~L~lpyrvv~~~tgdlg~~a~~---------------------~~DiE-~W~P~~ 224 (297)
T cd00770 167 FVFTKPEESWEELEELISNAEEILQELGLPYRVVNICTGDLGFAAAK---------------------KYDIE-AWMPGQ 224 (297)
T ss_pred EEECCHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCHHH---------------------EEEEE-EEEHHH
T ss_conf 76168788999999999999999998155014501246555732222---------------------07656-310541
Q ss_pred CCCCCCCCCCCHHHHCCCCCCCCCCCHHHHCCCCCCCEEEEECCCEEEEEEEEECCCHHHHHHHHHHHHHHC-----CCC
Q ss_conf 554554321100211033100121101110223467416731797213799640341037899999999738-----708
Q gi|254781004|r 472 GAFYGPKFEYILKDAIGRDWQCGTIQVDFNLPSRFNAFYVNSHSEKCHPVMIHRAVFGSIERFIGIMIENFK-----GNL 546 (652)
Q Consensus 472 ~afygpkid~~~~d~~gr~~~~~tiq~df~~p~~f~l~y~~~dg~~~~pvmihr~~~Gs~eR~ia~liE~~~-----g~~ 546 (652)
T Consensus 225 ~~y--------------~EvsS~Snc~DfQ-arRl~iry~~~~~~~~~~~htlngt~~A~~R~l~allEn~q~~dg~v~i 289 (297)
T cd00770 225 GKY--------------REISSCSNCTDFQ-ARRLNIRYRDKKDGKKQYVHTLNGTALATPRTIVAILENYQTEDGSVVI 289 (297)
T ss_pred CCE--------------EEEEECCCCHHHH-HHHCCCEEECCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCEEC
T ss_conf 976--------------8861315400066-6523677734899952654881363208888999999727389987868
Q ss_pred CCCCCCE
Q ss_conf 8733780
Q gi|254781004|r 547 PLWLSPI 553 (652)
Q Consensus 547 P~wLAP~ 553 (652)
T Consensus 290 P~~L~~y 296 (297)
T cd00770 290 PEVLRPY 296 (297)
T ss_pred CCCCCCC
T ss_conf 8003131