HHsearch alignment for GI: 254781004 and conserved domain: cd00772
>cd00772 ProRS_core Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain.
Probab=100.00 E-value=0 Score=424.30 Aligned_cols=241 Identities=19% Similarity=0.250 Sum_probs=202.1
Q ss_pred CCCCEEEEECCHHHHHHHHHHHHHHHHHC-CCEEEECCCCCCCCCCCCCCCCCCCCC-CCCEEECCCCCCCCCCEEEECC
Q ss_conf 78743565010789999999999988768-963855543244310001121001255-5420100145677782377434
Q gi|254781004|r 261 DGSGVIFWHRKGWKIFQTLISYMRRKIKD-DYEEINTPQVLDQHLWQQSGHWDSYRA-NMFAVKCADDTIKDLRTFALKP 338 (652)
Q Consensus 261 ~~~G~~~wlP~G~~i~~~ie~~ir~~~~~-G~~eV~tP~l~~~~Lw~~SGh~~~y~~-~mf~~~~~~~~~~~~~~~~LkP 338 (652)
T Consensus 20 ~~~G~~~~lP~G~~i~~ki~~~i~~e~~~~G~qev~~P~l~p~~lw~ksgr~~~~~~~e~~~~~~-~~~~~~e~~~~L~P 98 (264)
T cd00772 20 PGRGIINFLPLAKAILDKIENVLDKMFKEHGAQNALFPFFILASFLEKEAEHDEGFSKELAVFKD-AGDEELEEDFALRP 98 (264)
T ss_pred CCCCEEEECHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHCCCHHHCCCCCEEEEEE-CCCCCCCCCCCCCC
T ss_conf 98875888905999999999999999998299498125679989999769844437852379973-48742123520167
Q ss_pred CCHHHHHHHHHHCCCCHHHCCHHHHHHEEEECCCCCCCCEEEEECCCCCCCCCEEE-CCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 31257777652012222310432000100012787645200010563533442101-05376788789999998876655
Q gi|254781004|r 339 MNCPGHVAVFNHGLKSYRELPVRLAEFGSVYRNEPSGSLHGLMRVRGFTQDDAHVF-CTKEQMFNECLKIHNLIISIYKD 417 (652)
Q Consensus 339 mncp~h~~i~~~~~~SYrdLPlrl~e~~~~~R~E~sg~l~GL~R~ReF~~~Dah~F-~~~eq~~~e~~~~~~~~~~v~~~ 417 (652)
T Consensus 99 T~Ee~~~~~~~~~i~SyrdLPl~lyQ~~~~fR~E~r~-r~GllR~REFlmkDahsf~~t~e~a~~~y~~~~~~Y~~if~~ 177 (264)
T cd00772 99 TLEENIGEIAAKFIKSWKDLPQHLNQIGNKFRDEIRP-RFGFLRAREFIMKDGHSAHADAEEADEEFLNMLSAYAEIARD 177 (264)
T ss_pred CCCHHHHHHHHHHCCCHHHCCHHHHHHHHHHHCCCCC-CCCCHHHEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 7868999999864076655797787655786057885-543323204341103532599999999999999999999999
Q ss_pred HCCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCC
Q ss_conf 21332100014653112586035778999999999850212125667520555555455432110021103310012110
Q gi|254781004|r 418 FGFEKIMVKLSTRPEKRVGSDALWDDAENIMKGVLDTIKNSSQDRINTGVLLGEGAFYGPKFEYILKDAIGRDWQCGTIQ 497 (652)
Q Consensus 418 ~g~~~~~~~ls~~~~~~~g~~~~~~~ae~~l~~~l~~~~~~~~~~~~~~~~~g~~afygpkid~~~~d~~gr~~~~~tiq 497 (652)
T Consensus 178 lg~lp~~~~~~~~g~kf~Ga~~s~ef--------------------~~~~~~G~~---------------~~~ev~H~f~ 222 (264)
T cd00772 178 LAAIDFIEGEADEGAKFAGASKSREF--------------------EALMEDGKA---------------KQAETGHIFG 222 (264)
T ss_pred HCCCCCEEEECCCCCCCCCCEEEEEE--------------------EEECCCCCC---------------CEEEEEEECC
T ss_conf 66985167644778856885016899--------------------998788871---------------3644688815
Q ss_pred HHHHCCCCCCCEEEEECCCEEEEEEEEECCCH-HHHHHHHHHHHH
Q ss_conf 11102234674167317972137996403410-378999999997
Q gi|254781004|r 498 VDFNLPSRFNAFYVNSHSEKCHPVMIHRAVFG-SIERFIGIMIEN 541 (652)
Q Consensus 498 ~df~~p~~f~l~y~~~dg~~~~pvmihr~~~G-s~eR~ia~liE~ 541 (652)
T Consensus 223 ~g~~~s~~~~~~f~~~dg~~~~v~m---~syGIgitRligaiIeq 264 (264)
T cd00772 223 EGFARAFDLKAKFLDKDGKEKFFEM---GCWGIGISRFIGAIIEQ 264 (264)
T ss_pred CCCCEECCCCCEEECCCCCEEEEEE---CCCCCHHHHHHHEEECC
T ss_conf 7850122566578889999822580---36778177444405529