HHsearch alignment for GI: 254781004 and conserved domain: cd00774
>cd00774 GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-like class II core catalytic domain. GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes. It is responsible for the attachment of glycine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP binding and hydrolysis. This alignment contains only sequences from the GlyRS form which homodimerizes. The heterotetramer glyQ is in a different family of class II aaRS. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the N-terminus of the accessory subunit of mitochondrial polymerase gamma (Pol gamma b). Pol gamma b stimulates processive DNA synthesis and is functional as a homodimer, which can associate with the catalytic subunit Pol gamma alpha to form a heterotrimer. Despite significant both structural and sequence similarity with Gly
Probab=99.79 E-value=3.8e-19 Score=151.93 Aligned_cols=154 Identities=23% Similarity=0.300 Sum_probs=129.3
Q ss_pred CCCEEEEECCHHHHHHHHHHHHHHHH--HC-CCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCEEEECC
Q ss_conf 87435650107899999999999887--68-9638555432443100011210012555420100145677782377434
Q gi|254781004|r 262 GSGVIFWHRKGWKIFQTLISYMRRKI--KD-DYEEINTPQVLDQHLWQQSGHWDSYRANMFAVKCADDTIKDLRTFALKP 338 (652)
Q Consensus 262 ~~G~~~wlP~G~~i~~~ie~~ir~~~--~~-G~~eV~tP~l~~~~Lw~~SGh~~~y~~~mf~~~~~~~~~~~~~~~~LkP 338 (652)
T Consensus 21 ~ag~yDyGPlG~~LK~Ni~~~W~~~fv~~~~~~~~id~~ii~p~L--------------mF~T~i-G~~~~~~~~~yLRP 85 (254)
T cd00774 21 VAGFYDYGPLGVELKNNIKSAWRKSFVLEEEDMLEIDSPIITPEL--------------MFKTSI-GPVESGGNLGYLRP 85 (254)
T ss_pred HHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCC--------------CEECCC-CCCCCCCCCEEECH
T ss_conf 310615482379999999999999987437987995410036632--------------200121-56558986035363
Q ss_pred CCHHHHHHHHHHCCCCHH-HCCHHHHHHEEEECCCCCCCCEEEEECCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 312577776520122223-1043200010001278764520001056353344210105376788789999998876655
Q gi|254781004|r 339 MNCPGHVAVFNHGLKSYR-ELPVRLAEFGSVYRNEPSGSLHGLMRVRGFTQDDAHVFCTKEQMFNECLKIHNLIISIYKD 417 (652)
Q Consensus 339 mncp~h~~i~~~~~~SYr-dLPlrl~e~~~~~R~E~sg~l~GL~R~ReF~~~Dah~F~~~eq~~~e~~~~~~~~~~v~~~ 417 (652)
T Consensus 86 ETAQGifvnFk~~~~~~r~kLPFGiaQIGk~FRNEIsP-r~~l~R~REF~q~EiE~F~~P~~~~~~~~~w~~~~l~~~~~ 164 (254)
T cd00774 86 ETAQGIFVNFKNLLEFNRRKLPFGVAQIGKSFRNEISP-RNGLFRVREFTQAEIEFFVDPEKSHPWFDYWADQRLKWLPK 164 (254)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCC-CCCCCCHHCHHHHEEEEEECCCCCHHHHHHHHHHHHHHHHH
T ss_conf 45347798789999964888884456542022673477-76754000002125788857986425789999999866387
Q ss_pred HCCCCCEECCCCCC
Q ss_conf 21332100014653
Q gi|254781004|r 418 FGFEKIMVKLSTRP 431 (652)
Q Consensus 418 ~g~~~~~~~ls~~~ 431 (652)
T Consensus 165 ~~~~~~~~~~~~~~ 178 (254)
T cd00774 165 FAQSPENLRLTDHE 178 (254)
T ss_pred HCCCCCCEEEECCC
T ss_conf 38996653673046